BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 010342
         (512 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|297742922|emb|CBI35789.3| unnamed protein product [Vitis vinifera]
          Length = 912

 Score =  771 bits (1990), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/505 (71%), Positives = 431/505 (85%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           + QLC  S+  EAH LFFDM+SRGH PN VSYTTLI GYC+ GE   A+K+FDEM   GV
Sbjct: 407 IHQLCSFSQPNEAHGLFFDMRSRGHCPNAVSYTTLIDGYCKIGEETSAWKLFDEMLESGV 466

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +PNSLTYSVL++GVL  RDVER   LM KLW++M +E D SVNNAAFANL+DSLC+EG+ 
Sbjct: 467 VPNSLTYSVLLKGVLCKRDVERGRELMCKLWQKMMDENDPSVNNAAFANLIDSLCKEGFF 526

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            EVFRIAEDMPQGKSV+EEF  G MIDSLCR GRNHGASR+VY+MRKRG  PSLVSYN I
Sbjct: 527 LEVFRIAEDMPQGKSVSEEFVYGQMIDSLCRCGRNHGASRIVYIMRKRGFFPSLVSYNYI 586

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           VHGL K GGCMRAYQLL+EG++FGY+ SEHTYKVL+E LC ++DL KAR+V+Q ML+K+ 
Sbjct: 587 VHGLSKEGGCMRAYQLLKEGVEFGYMMSEHTYKVLLEALCRDADLCKAREVMQLMLNKEG 646

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           VD+TRI NIYLRALCL+ NPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGR+EEALK
Sbjct: 647 VDQTRIYNIYLRALCLMNNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRVEEALK 706

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           VL+DMV GKFCAPD+VT+TTII GLLN+GR +EAL++L +VMP++G+ PG+VT+NAVL G
Sbjct: 707 VLDDMVMGKFCAPDSVTYTTIICGLLNLGRTEEALDVLRRVMPEKGFKPGVVTFNAVLHG 766

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           LF+L++   A EVFN M+  GV A++ TY I+IDGL ES+Q+DEAKRFWDD++WPS +HD
Sbjct: 767 LFKLQQANVATEVFNSMVSDGVAANTITYTIIIDGLFESDQIDEAKRFWDDVIWPSKVHD 826

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
           N+VYAA++KGLCRSGK++EA  FLYELVD GVT N+V YN++ID ACKL  KREAY I++
Sbjct: 827 NFVYAAILKGLCRSGKLNEACDFLYELVDCGVTLNVVNYNILIDHACKLGSKREAYTIVQ 886

Query: 481 EMRKNGLNPDAVTWRILDKLHGNRG 505
           EM+KNGL PDAVTWRIL KLHGN G
Sbjct: 887 EMKKNGLTPDAVTWRILHKLHGNVG 911



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 121/481 (25%), Positives = 212/481 (44%), Gaps = 55/481 (11%)

Query: 28  NVVSYTTLIHGYC-RTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVL 86
           N   ++  IH  C R   +D A ++ D +R  G  P+SL  S ++  +    D  R +  
Sbjct: 291 NKAFWSRKIHNLCTRDRNVDEALRLLDLLRLRGYRPDSLNLSSIIHALC---DANRFSEA 347

Query: 87  MFKLWERMKEE--EDLSVNNAAFANLVDSLCREGYVNEVFR--IA---EDMPQGKSVNEE 139
             +L          D    N   A L+DS      ++ VFR  IA   E +P   + N  
Sbjct: 348 HHRLLLSFASHCVPDQRTCNVLIARLLDSRTPHATLH-VFRGLIAARPEFVPSLINYNR- 405

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
                +I  LC   + + A  + + MR RG  P+ VSY +++ G CK G    A++L +E
Sbjct: 406 -----LIHQLCSFSQPNEAHGLFFDMRSRGHCPNAVSYTTLIDGYCKIGEETSAWKLFDE 460

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
            ++ G +P+  TY VL++G+                L K+DV+R R              
Sbjct: 461 MLESGVVPNSLTYSVLLKGV----------------LCKRDVERGR-------------- 490

Query: 260 PTELLNVLVFMLQTQCQPDV--ITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVT 317
             EL+  L   +  +  P V       +I+  CK G   E  ++  DM  GK  + + V 
Sbjct: 491 --ELMCKLWQKMMDENDPSVNNAAFANLIDSLCKEGFFLEVFRIAEDMPQGKSVSEEFV- 547

Query: 318 FTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCM 377
           +  +I  L   GR   A  ++Y +M +RG+ P +V+YN ++ GL +      A ++    
Sbjct: 548 YGQMIDSLCRCGRNHGASRIVY-IMRKRGFFPSLVSYNYIVHGLSKEGGCMRAYQLLKEG 606

Query: 378 LGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKI 437
           +  G +    TY ++++ LC    L +A+     ++    +    +Y   ++ LC     
Sbjct: 607 VEFGYMMSEHTYKVLLEALCRDADLCKAREVMQLMLNKEGVDQTRIYNIYLRALCLMNNP 666

Query: 438 HEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL-NPDAVTWRI 496
            E ++ L  ++ +   P+++  N VI+G CK+    EA ++L +M       PD+VT+  
Sbjct: 667 TELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRVEEALKVLDDMVMGKFCAPDSVTYTT 726

Query: 497 L 497
           +
Sbjct: 727 I 727


>gi|225441965|ref|XP_002271048.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g18020-like [Vitis vinifera]
          Length = 680

 Score =  770 bits (1989), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/505 (71%), Positives = 431/505 (85%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           + QLC  S+  EAH LFFDM+SRGH PN VSYTTLI GYC+ GE   A+K+FDEM   GV
Sbjct: 175 IHQLCSFSQPNEAHGLFFDMRSRGHCPNAVSYTTLIDGYCKIGEETSAWKLFDEMLESGV 234

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +PNSLTYSVL++GVL  RDVER   LM KLW++M +E D SVNNAAFANL+DSLC+EG+ 
Sbjct: 235 VPNSLTYSVLLKGVLCKRDVERGRELMCKLWQKMMDENDPSVNNAAFANLIDSLCKEGFF 294

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            EVFRIAEDMPQGKSV+EEF  G MIDSLCR GRNHGASR+VY+MRKRG  PSLVSYN I
Sbjct: 295 LEVFRIAEDMPQGKSVSEEFVYGQMIDSLCRCGRNHGASRIVYIMRKRGFFPSLVSYNYI 354

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           VHGL K GGCMRAYQLL+EG++FGY+ SEHTYKVL+E LC ++DL KAR+V+Q ML+K+ 
Sbjct: 355 VHGLSKEGGCMRAYQLLKEGVEFGYMMSEHTYKVLLEALCRDADLCKAREVMQLMLNKEG 414

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           VD+TRI NIYLRALCL+ NPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGR+EEALK
Sbjct: 415 VDQTRIYNIYLRALCLMNNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRVEEALK 474

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           VL+DMV GKFCAPD+VT+TTII GLLN+GR +EAL++L +VMP++G+ PG+VT+NAVL G
Sbjct: 475 VLDDMVMGKFCAPDSVTYTTIICGLLNLGRTEEALDVLRRVMPEKGFKPGVVTFNAVLHG 534

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           LF+L++   A EVFN M+  GV A++ TY I+IDGL ES+Q+DEAKRFWDD++WPS +HD
Sbjct: 535 LFKLQQANVATEVFNSMVSDGVAANTITYTIIIDGLFESDQIDEAKRFWDDVIWPSKVHD 594

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
           N+VYAA++KGLCRSGK++EA  FLYELVD GVT N+V YN++ID ACKL  KREAY I++
Sbjct: 595 NFVYAAILKGLCRSGKLNEACDFLYELVDCGVTLNVVNYNILIDHACKLGSKREAYTIVQ 654

Query: 481 EMRKNGLNPDAVTWRILDKLHGNRG 505
           EM+KNGL PDAVTWRIL KLHGN G
Sbjct: 655 EMKKNGLTPDAVTWRILHKLHGNVG 679



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 121/481 (25%), Positives = 212/481 (44%), Gaps = 55/481 (11%)

Query: 28  NVVSYTTLIHGYC-RTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVL 86
           N   ++  IH  C R   +D A ++ D +R  G  P+SL  S ++  +    D  R +  
Sbjct: 59  NKAFWSRKIHNLCTRDRNVDEALRLLDLLRLRGYRPDSLNLSSIIHALC---DANRFSEA 115

Query: 87  MFKLWERMKEE--EDLSVNNAAFANLVDSLCREGYVNEVFR--IA---EDMPQGKSVNEE 139
             +L          D    N   A L+DS      ++ VFR  IA   E +P   + N  
Sbjct: 116 HHRLLLSFASHCVPDQRTCNVLIARLLDSRTPHATLH-VFRGLIAARPEFVPSLINYNR- 173

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
                +I  LC   + + A  + + MR RG  P+ VSY +++ G CK G    A++L +E
Sbjct: 174 -----LIHQLCSFSQPNEAHGLFFDMRSRGHCPNAVSYTTLIDGYCKIGEETSAWKLFDE 228

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
            ++ G +P+  TY VL++G+                L K+DV+R R              
Sbjct: 229 MLESGVVPNSLTYSVLLKGV----------------LCKRDVERGR-------------- 258

Query: 260 PTELLNVLVFMLQTQCQPDV--ITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVT 317
             EL+  L   +  +  P V       +I+  CK G   E  ++  DM  GK  + + V 
Sbjct: 259 --ELMCKLWQKMMDENDPSVNNAAFANLIDSLCKEGFFLEVFRIAEDMPQGKSVSEEFV- 315

Query: 318 FTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCM 377
           +  +I  L   GR   A  ++Y +M +RG+ P +V+YN ++ GL +      A ++    
Sbjct: 316 YGQMIDSLCRCGRNHGASRIVY-IMRKRGFFPSLVSYNYIVHGLSKEGGCMRAYQLLKEG 374

Query: 378 LGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKI 437
           +  G +    TY ++++ LC    L +A+     ++    +    +Y   ++ LC     
Sbjct: 375 VEFGYMMSEHTYKVLLEALCRDADLCKAREVMQLMLNKEGVDQTRIYNIYLRALCLMNNP 434

Query: 438 HEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL-NPDAVTWRI 496
            E ++ L  ++ +   P+++  N VI+G CK+    EA ++L +M       PD+VT+  
Sbjct: 435 TELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRVEEALKVLDDMVMGKFCAPDSVTYTT 494

Query: 497 L 497
           +
Sbjct: 495 I 495


>gi|255577348|ref|XP_002529554.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223530966|gb|EEF32823.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 678

 Score =  761 bits (1965), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/502 (70%), Positives = 420/502 (83%), Gaps = 1/502 (0%)

Query: 3   QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           Q C  S+   AH+L FDM SRGH PNVV++T+L+ GYCR GE+  AYK+FDEMR C V+P
Sbjct: 174 QCCEFSQPDVAHRLLFDMISRGHCPNVVTFTSLLTGYCRVGEVGNAYKLFDEMRECSVVP 233

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEE-DLSVNNAAFANLVDSLCREGYVN 121
           NSLTYSVL+RG+LR  D E    LM  LWE MK+EE + SVN AAF N++DSLCREG++N
Sbjct: 234 NSLTYSVLIRGLLRQGDFEHGRELMCNLWETMKDEEKNQSVNAAAFVNVIDSLCREGFLN 293

Query: 122 EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
           +VF+IAEDMPQGKSVN+EFA  HMIDSLCR+G+NHGASR+VY+M+K+GLTPSLVSYNSI+
Sbjct: 294 DVFKIAEDMPQGKSVNQEFAYAHMIDSLCRAGKNHGASRIVYMMKKKGLTPSLVSYNSII 353

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
           HGLCK  GCMRAYQL EEGI+FGYLPSE+TYKVLVE LC E DL+KAR++++ ML+K  V
Sbjct: 354 HGLCKERGCMRAYQLFEEGIEFGYLPSEYTYKVLVEALCQEMDLDKARRIVEAMLNKDGV 413

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
           DRTRI NIYLRALCL  + TELLNVLV MLQT+CQPDVITLNTV+NGFCKM RIEEAL +
Sbjct: 414 DRTRIYNIYLRALCLTNSATELLNVLVSMLQTECQPDVITLNTVVNGFCKMHRIEEALTI 473

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
           L DM  GKFCAPDAVTFTTII GLLN GR QEALNLLY+VM ++G SPG+ TYNAV+ GL
Sbjct: 474 LTDMTMGKFCAPDAVTFTTIIAGLLNAGRSQEALNLLYKVMHEKGISPGVETYNAVIHGL 533

Query: 362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
           F+L+  EEA   F  ML  GV ADS TY ++IDGLCES  +D+AK+ WDD++WPS IHD+
Sbjct: 534 FKLQLAEEAMRAFKRMLAAGVAADSKTYTLIIDGLCESGLIDKAKKLWDDVIWPSRIHDD 593

Query: 422 YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
           +VYA+++KGLCR+GK+ EA HFLYELVDSGV+PNI+ YN+VID ACKL MKREAYQ++ E
Sbjct: 594 FVYASILKGLCRAGKLDEACHFLYELVDSGVSPNIISYNIVIDSACKLGMKREAYQVVTE 653

Query: 482 MRKNGLNPDAVTWRILDKLHGN 503
           MRKNGL PDAVTWRILDKLH  
Sbjct: 654 MRKNGLTPDAVTWRILDKLHAT 675



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 155/327 (47%), Gaps = 13/327 (3%)

Query: 181 VHGLC-KHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           +H LC +      A  LL+     GY P    +  ++  LC     ++A       ++  
Sbjct: 64  IHLLCTQQRKVDEALTLLDHLRLSGYRPDSLNFSSIIHALCDAKRFKEAHHRFLLCIASD 123

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVL--VFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
            V   R CN+ +  L   + P   L+VL  +F ++ Q  P +I  N  I   C+  + + 
Sbjct: 124 CVPDERTCNVLIARLLDSQYPHATLHVLYRLFHVKPQFVPSLINYNRFIYQCCEFSQPDV 183

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           A ++L DM++   C P+ VTFT+++ G   VG +  A   L+  M +    P  +TY+ +
Sbjct: 184 AHRLLFDMISRGHC-PNVVTFTSLLTGYCRVGEVGNAYK-LFDEMRECSVVPNSLTYSVL 241

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGV-------VADSTTYAIVIDGLCESNQLDEAKRFWD 410
           +RGL R    E  +E+  C L   +         ++  +  VID LC    L++  +  +
Sbjct: 242 IRGLLRQGDFEHGRELM-CNLWETMKDEEKNQSVNAAAFVNVIDSLCREGFLNDVFKIAE 300

Query: 411 DIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLS 470
           D+    +++  + YA MI  LCR+GK H A   +Y +   G+TP++V YN +I G CK  
Sbjct: 301 DMPQGKSVNQEFAYAHMIDSLCRAGKNHGASRIVYMMKKKGLTPSLVSYNSIIHGLCKER 360

Query: 471 MKREAYQILREMRKNGLNPDAVTWRIL 497
               AYQ+  E  + G  P   T+++L
Sbjct: 361 GCMRAYQLFEEGIEFGYLPSEYTYKVL 387



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 112/479 (23%), Positives = 209/479 (43%), Gaps = 52/479 (10%)

Query: 26  VPNVVSYTTLIHGYC-RTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERAN 84
           + N   +T  IH  C +  ++D A  + D +R  G  P+SL +S ++  +   +      
Sbjct: 54  ITNSSYWTKKIHLLCTQQRKVDEALTLLDHLRLSGYRPDSLNFSSIIHALCDAK------ 107

Query: 85  VLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGH 144
                   R KE     +           LC          IA D      V +E  C  
Sbjct: 108 --------RFKEAHHRFL-----------LC----------IASD-----CVPDERTCNV 133

Query: 145 MIDSLCRSGRNHGASRVVYVMR--KRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQ 202
           +I  L  S   H    V+Y +   K    PSL++YN  ++  C+      A++LL + I 
Sbjct: 134 LIARLLDSQYPHATLHVLYRLFHVKPQFVPSLINYNRFIYQCCEFSQPDVAHRLLFDMIS 193

Query: 203 FGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCL---IKN 259
            G+ P+  T+  L+ G C   ++  A K+   M     V  +   ++ +R L      ++
Sbjct: 194 RGHCPNVVTFTSLLTGYCRVGEVGNAYKLFDEMRECSVVPNSLTYSVLIRGLLRQGDFEH 253

Query: 260 PTELLNVLVFMLQTQCQPDVI---TLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAV 316
             EL+  L   ++ + +   +       VI+  C+ G + +  K+  DM  GK       
Sbjct: 254 GRELMCNLWETMKDEEKNQSVNAAAFVNVIDSLCREGFLNDVFKIAEDMPQGK-SVNQEF 312

Query: 317 TFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNC 376
            +  +I  L   G+   A  ++Y +M ++G +P +V+YN+++ GL + R    A ++F  
Sbjct: 313 AYAHMIDSLCRAGKNHGASRIVY-MMKKKGLTPSLVSYNSIIHGLCKERGCMRAYQLFEE 371

Query: 377 MLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGK 436
            +  G +    TY ++++ LC+   LD+A+R  + ++    +    +Y   ++ LC +  
Sbjct: 372 GIEFGYLPSEYTYKVLVEALCQEMDLDKARRIVEAMLNKDGVDRTRIYNIYLRALCLTNS 431

Query: 437 IHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL-NPDAVTW 494
             E ++ L  ++ +   P+++  N V++G CK+    EA  IL +M       PDAVT+
Sbjct: 432 ATELLNVLVSMLQTECQPDVITLNTVVNGFCKMHRIEEALTILTDMTMGKFCAPDAVTF 490



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 95/394 (24%), Positives = 181/394 (45%), Gaps = 9/394 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    + +  K+  DM     V    +Y  +I   CR G+   A ++   M+  G+
Sbjct: 283 IDSLCREGFLNDVFKIAEDMPQGKSVNQEFAYAHMIDSLCRAGKNHGASRIVYMMKKKGL 342

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ ++Y+ ++ G+ + R   RA    ++L+E   E   L  +   +  LV++LC+E  +
Sbjct: 343 TPSLVSYNSIIHGLCKERGCMRA----YQLFEEGIEFGYLP-SEYTYKVLVEALCQEMDL 397

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           ++  RI E M     V+        + +LC +        V+  M +    P +++ N++
Sbjct: 398 DKARRIVEAMLNKDGVDRTRIYNIYLRALCLTNSATELLNVLVSMLQTECQPDVITLNTV 457

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGY-LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           V+G CK      A  +L +     +  P   T+  ++ GL      ++A  +L  ++ +K
Sbjct: 458 VNGFCKMHRIEEALTILTDMTMGKFCAPDAVTFTTIIAGLLNAGRSQEALNLLYKVMHEK 517

Query: 240 DVDR-TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
            +       N  +  L  ++   E +     ML      D  T   +I+G C+ G I++A
Sbjct: 518 GISPGVETYNAVIHGLFKLQLAEEAMRAFKRMLAAGVAADSKTYTLIIDGLCESGLIDKA 577

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
            K+ +D++       D V + +I+ GL   G++ EA + LY+++   G SP I++YN V+
Sbjct: 578 KKLWDDVIWPSRIHDDFV-YASILKGLCRAGKLDEACHFLYELV-DSGVSPNIISYNIVI 635

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIV 392
               +L    EA +V   M   G+  D+ T+ I+
Sbjct: 636 DSACKLGMKREAYQVVTEMRKNGLTPDAVTWRIL 669


>gi|224135537|ref|XP_002322098.1| predicted protein [Populus trichocarpa]
 gi|222869094|gb|EEF06225.1| predicted protein [Populus trichocarpa]
          Length = 668

 Score =  746 bits (1925), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/506 (69%), Positives = 425/506 (83%), Gaps = 1/506 (0%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +DQ C +S    AH++ +DM +RGH P++VSYTTL++GY + GE+  AYK+FDEM   GV
Sbjct: 164 IDQFCSVSLPNVAHRMLYDMINRGHCPSIVSYTTLVNGYSKIGEISDAYKLFDEMPEWGV 223

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +PNSL+YS+L+RGVLR RD+ER   LM  L++RM+ EED SVN+AAF NLVD LCREG  
Sbjct: 224 VPNSLSYSLLIRGVLRKRDIERGRELMHVLFQRMRHEEDQSVNSAAFDNLVDCLCREGLF 283

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           NEVF IAE+MPQG  VNE+FA GH+IDSLC+ GR+HGASRVVY+MRK+G TPS+VSYNSI
Sbjct: 284 NEVFMIAEEMPQGNRVNEDFAYGHLIDSLCKVGRSHGASRVVYIMRKKGFTPSVVSYNSI 343

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +HGLCK GGCMRAYQLLEEG+ FGYL SE+TYKVLVE LC   DL+KAR+VL+ ML+K  
Sbjct: 344 IHGLCKEGGCMRAYQLLEEGVGFGYLLSEYTYKVLVEALCQAMDLDKAREVLKVMLNKGG 403

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           +DRTRI NIYLRALCL+ NPTELLNVLV MLQT CQPDVITLNTVINGFCKMGR+EEALK
Sbjct: 404 MDRTRIYNIYLRALCLMNNPTELLNVLVSMLQTNCQPDVITLNTVINGFCKMGRVEEALK 463

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           VLNDM+ GKF APDAVTFT+II GLLNVGR QEA NLL Q++ ++G +PG+VTYNA+LRG
Sbjct: 464 VLNDMMTGKFSAPDAVTFTSIISGLLNVGRSQEARNLLLQML-EKGITPGVVTYNAILRG 522

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           LF+L+  +EA  VF+ M+  GV A+S TY+I+++GLCES Q+D AK+FWD+++WPS IHD
Sbjct: 523 LFKLQLTKEAMAVFDEMITDGVAANSQTYSIIVEGLCESGQIDGAKKFWDEVIWPSKIHD 582

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
           ++VYAA++KGLCRSG ++EA+HFLYELVDSGV PNIV YN+VID AC L MKREAYQI  
Sbjct: 583 DFVYAAILKGLCRSGHLNEAIHFLYELVDSGVNPNIVSYNIVIDRACSLGMKREAYQIAG 642

Query: 481 EMRKNGLNPDAVTWRILDKLHGNRGN 506
           EM+KNGL PDAVTWR LDKLHG   N
Sbjct: 643 EMQKNGLTPDAVTWRTLDKLHGQVKN 668



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 125/536 (23%), Positives = 235/536 (43%), Gaps = 82/536 (15%)

Query: 4   LCGLSR-VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           LC   R V EA +L   ++ RG++P+ ++ +++IHG C     + A++          +P
Sbjct: 59  LCTKHRNVDEALRLLDHLRLRGYLPDSLNLSSIIHGLCDANRFNEAHQRLIIFLTSLCVP 118

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           +  T +VLV  +L ++D  R                                     +N 
Sbjct: 119 DERTCNVLVARLLHSKDPFRT------------------------------------LNV 142

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
           + R+ E  P+   V        +ID  C     + A R++Y M  RG  PS+VSY ++V+
Sbjct: 143 IHRLIEFKPE--FVPSLINYNRLIDQFCSVSLPNVAHRMLYDMINRGHCPSIVSYTTLVN 200

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQ--------- 233
           G  K G    AY+L +E  ++G +P+  +Y +L+ G+  + D+E+ R+++          
Sbjct: 201 GYSKIGEISDAYKLFDEMPEWGVVPNSLSYSLLIRGVLRKRDIERGRELMHVLFQRMRHE 260

Query: 234 --------------------------FMLSKKDVDRTRICNIY-----LRALCLIKNPTE 262
                                     FM++++     R+   +     + +LC +     
Sbjct: 261 EDQSVNSAAFDNLVDCLCREGLFNEVFMIAEEMPQGNRVNEDFAYGHLIDSLCKVGRSHG 320

Query: 263 LLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTII 322
              V+  M +    P V++ N++I+G CK G    A ++L + V   +   +  T+  ++
Sbjct: 321 ASRVVYIMRKKGFTPSVVSYNSIIHGLCKEGGCMRAYQLLEEGVGFGYLLSE-YTYKVLV 379

Query: 323 FGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGV 382
             L     + +A  +L +VM  +G       YN  LR L  +    E   V   ML    
Sbjct: 380 EALCQAMDLDKAREVL-KVMLNKGGMDRTRIYNIYLRALCLMNNPTELLNVLVSMLQTNC 438

Query: 383 VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS-NIHDNYVYAAMIKGLCRSGKIHEAV 441
             D  T   VI+G C+  +++EA +  +D++    +  D   + ++I GL   G+  EA 
Sbjct: 439 QPDVITLNTVINGFCKMGRVEEALKVLNDMMTGKFSAPDAVTFTSIISGLLNVGRSQEAR 498

Query: 442 HFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           + L ++++ G+TP +V YN ++ G  KL + +EA  +  EM  +G+  ++ T+ I+
Sbjct: 499 NLLLQMLEKGITPGVVTYNAILRGLFKLQLTKEAMAVFDEMITDGVAANSQTYSII 554



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 97/369 (26%), Positives = 173/369 (46%), Gaps = 30/369 (8%)

Query: 137 NEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLC-KHGGCMRAYQ 195
           N+E A  H   S+C + R++   +                    +H LC KH     A +
Sbjct: 32  NQEQALNHQQQSICITNRSYWTQK--------------------IHDLCTKHRNVDEALR 71

Query: 196 LLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALC 255
           LL+     GYLP       ++ GLC  +   +A + L   L+   V   R CN+ +  L 
Sbjct: 72  LLDHLRLRGYLPDSLNLSSIIHGLCDANRFNEAHQRLIIFLTSLCVPDERTCNVLVARLL 131

Query: 256 LIKNPTELLNVLVFMLQTQCQ--PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAP 313
             K+P   LNV+  +++ + +  P +I  N +I+ FC +     A ++L DM+    C P
Sbjct: 132 HSKDPFRTLNVIHRLIEFKPEFVPSLINYNRLIDQFCSVSLPNVAHRMLYDMINRGHC-P 190

Query: 314 DAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEV 373
             V++TT++ G   +G I +A   L+  MP+ G  P  ++Y+ ++RG+ R R +E  +E+
Sbjct: 191 SIVSYTTLVNGYSKIGEISDAYK-LFDEMPEWGVVPNSLSYSLLIRGVLRKRDIERGREL 249

Query: 374 FNCMLG-----IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI 428
            + +            +S  +  ++D LC     +E     +++   + +++++ Y  +I
Sbjct: 250 MHVLFQRMRHEEDQSVNSAAFDNLVDCLCREGLFNEVFMIAEEMPQGNRVNEDFAYGHLI 309

Query: 429 KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLN 488
             LC+ G+ H A   +Y +   G TP++V YN +I G CK      AYQ+L E    G  
Sbjct: 310 DSLCKVGRSHGASRVVYIMRKKGFTPSVVSYNSIIHGLCKEGGCMRAYQLLEEGVGFGYL 369

Query: 489 PDAVTWRIL 497
               T+++L
Sbjct: 370 LSEYTYKVL 378


>gi|147855454|emb|CAN79606.1| hypothetical protein VITISV_027500 [Vitis vinifera]
          Length = 959

 Score =  746 bits (1925), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/503 (70%), Positives = 420/503 (83%), Gaps = 11/503 (2%)

Query: 3   QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           QLC  S+  EAH LFFDM+SRGH PN VSYTTLI GYC+ GE   A+K+FDEM   GV+P
Sbjct: 467 QLCSFSQPNEAHGLFFDMRSRGHCPNAVSYTTLIDGYCKIGEETSAWKLFDEMLESGVVP 526

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           NSLTYSVL++GVL  RDVER   LM KLW++M +E D SVNNAAFANL+DSLC+EG+  E
Sbjct: 527 NSLTYSVLLKGVLCKRDVERGRELMCKLWQKMMDENDPSVNNAAFANLIDSLCKEGFFLE 586

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
           VFRIAEDMPQGKSV+EEFA G MIDSLCR GRNHGASR+VY+MRKRG  PSLVSYN IVH
Sbjct: 587 VFRIAEDMPQGKSVSEEFAYGQMIDSLCRCGRNHGASRIVYIMRKRGFFPSLVSYNYIVH 646

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           GL K GGCMRAYQLL+EG++FGY+ SEHTYKVL+E LC ++DL KAR+V+Q ML+K+ VD
Sbjct: 647 GLSKEGGCMRAYQLLKEGVEFGYMMSEHTYKVLLEALCRDADLCKAREVMQLMLNKEGVD 706

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
           +TRI NIYLRALCL+ NPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGR+EEALKVL
Sbjct: 707 QTRIYNIYLRALCLMNNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRVEEALKVL 766

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
           +DMV GKFCAPD+VT+TTII GLLN+GR  EAL++L +VMP++           VL GLF
Sbjct: 767 DDMVMGKFCAPDSVTYTTIICGLLNLGRTAEALDVLRRVMPEK-----------VLHGLF 815

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
           +L++   A EVFN M+  GV A++ TY I+IDGL ES+Q+DEAKRFWDD++WPS +HDN+
Sbjct: 816 KLQQANVATEVFNSMVSDGVAANTITYTIIIDGLFESDQIDEAKRFWDDVIWPSKVHDNF 875

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
           VYAA++KGLCRSGK++EA  FLYELVD GVT N+V YN++ID ACKL  KREAY I++EM
Sbjct: 876 VYAAILKGLCRSGKLNEACDFLYELVDCGVTLNVVNYNILIDHACKLGSKREAYTIVQEM 935

Query: 483 RKNGLNPDAVTWRILDKLHGNRG 505
           +KNGL PDAVTWRIL KLHGN G
Sbjct: 936 KKNGLTPDAVTWRILHKLHGNVG 958



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 116/493 (23%), Positives = 212/493 (43%), Gaps = 79/493 (16%)

Query: 10  VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYK--VFDEMRHCGVLPNSLTY 67
           V EA +L   ++ RG+ P+ ++ +++IH  C       A+   +     HC  +P+  T 
Sbjct: 367 VDEALRLLDLLRLRGYRPDSLNLSSIIHALCDANRFSEAHHRLLLSFASHC--VPDQRTC 424

Query: 68  SVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIA 127
           +VL+  +L +R    A + +F+     + E   S+ N  +  L+  LC     NE     
Sbjct: 425 NVLIARLLDSR-TPHATLHVFRGLIAARPEFVPSLIN--YNRLIHQLCSFSQPNEA---- 477

Query: 128 EDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKH 187
                                       HG   + + MR RG  P+ VSY +++ G CK 
Sbjct: 478 ----------------------------HG---LFFDMRSRGHCPNAVSYTTLIDGYCKI 506

Query: 188 GGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC 247
           G    A++L +E ++ G +P+  TY VL++G+                L K+DV+R R  
Sbjct: 507 GEETSAWKLFDEMLESGVVPNSLTYSVLLKGV----------------LCKRDVERGR-- 548

Query: 248 NIYLRALCLIKNPTELLNVLVFMLQTQCQPDV--ITLNTVINGFCKMGRIEEALKVLNDM 305
                         EL+  L   +  +  P V       +I+  CK G   E  ++  DM
Sbjct: 549 --------------ELMCKLWQKMMDENDPSVNNAAFANLIDSLCKEGFFLEVFRIAEDM 594

Query: 306 VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLR 365
             GK  + +   +  +I  L   GR   A  ++Y +M +RG+ P +V+YN ++ GL +  
Sbjct: 595 PQGKSVS-EEFAYGQMIDSLCRCGRNHGASRIVY-IMRKRGFFPSLVSYNYIVHGLSKEG 652

Query: 366 RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYA 425
               A ++    +  G +    TY ++++ LC    L +A+     ++    +    +Y 
Sbjct: 653 GCMRAYQLLKEGVEFGYMMSEHTYKVLLEALCRDADLCKAREVMQLMLNKEGVDQTRIYN 712

Query: 426 AMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN 485
             ++ LC      E ++ L  ++ +   P+++  N VI+G CK+    EA ++L +M   
Sbjct: 713 IYLRALCLMNNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRVEEALKVLDDMVMG 772

Query: 486 GL-NPDAVTWRIL 497
               PD+VT+  +
Sbjct: 773 KFCAPDSVTYTTI 785



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 85/395 (21%), Positives = 171/395 (43%), Gaps = 22/395 (5%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC      E  ++  DM     V    +Y  +I   CR G    A ++   MR  G 
Sbjct: 575 IDSLCKEGFFLEVFRIAEDMPQGKSVSEEFAYGQMIDSLCRCGRNHGASRIVYIMRKRGF 634

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKE--EEDLSVNNAAFANLVDSLCREG 118
            P+ ++Y+ +V G+ +     RA       ++ +KE  E    ++   +  L+++LCR+ 
Sbjct: 635 FPSLVSYNYIVHGLSKEGGCMRA-------YQLLKEGVEFGYMMSEHTYKVLLEALCRDA 687

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
            + +   + + M   + V++       + +LC          V+  M +    P +++ N
Sbjct: 688 DLCKAREVMQLMLNKEGVDQTRIYNIYLRALCLMNNPTELLNVLVFMLQTQCQPDVITLN 747

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGY-LPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
           ++++G CK G    A ++L++ +   +  P   TY  ++ GL       +A  VL+ ++ 
Sbjct: 748 TVINGFCKMGRVEEALKVLDDMVMGKFCAPDSVTYTTIICGLLNLGRTAEALDVLRRVMP 807

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
           +K           L  L  ++       V   M+      + IT   +I+G  +  +I+E
Sbjct: 808 EK----------VLHGLFKLQQANVATEVFNSMVSDGVAANTITYTIIIDGLFESDQIDE 857

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           A +  +D++       D   +  I+ GL   G++ EA + LY+++   G +  +V YN +
Sbjct: 858 AKRFWDDVIWPSKVH-DNFVYAAILKGLCRSGKLNEACDFLYELV-DCGVTLNVVNYNIL 915

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIV 392
           +    +L    EA  +   M   G+  D+ T+ I+
Sbjct: 916 IDHACKLGSKREAYTIVQEMKKNGLTPDAVTWRIL 950



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 70/156 (44%), Gaps = 2/156 (1%)

Query: 346 GYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA 405
           GY P  +  ++++  L    R  EA            V D  T  ++I  L +S      
Sbjct: 381 GYRPDSLNLSSIIHALCDANRFSEAHHRLLLSFASHCVPDQRTCNVLIARLLDSRTPHAT 440

Query: 406 KRFWDDIVW--PSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463
              +  ++   P  +     Y  +I  LC   + +EA    +++   G  PN V Y  +I
Sbjct: 441 LHVFRGLIAARPEFVPSLINYNRLIHQLCSFSQPNEAHGLFFDMRSRGHCPNAVSYTTLI 500

Query: 464 DGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
           DG CK+  +  A+++  EM ++G+ P+++T+ +L K
Sbjct: 501 DGYCKIGEETSAWKLFDEMLESGVVPNSLTYSVLLK 536


>gi|449497581|ref|XP_004160441.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g18020-like [Cucumis sativus]
          Length = 681

 Score =  719 bits (1855), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/506 (67%), Positives = 405/506 (80%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +DQ C  S    AH++ FDMKSRGH PNVVSYT LI GYCR   +  A K+FDEM    V
Sbjct: 168 IDQFCSFSLPNVAHRVLFDMKSRGHCPNVVSYTALIDGYCRVCNVSAAEKLFDEMPGNYV 227

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PNSLTYSVL+ G L  RD E    L+  LWERMK E D SVNNAAFA+LVDSLC  G  
Sbjct: 228 EPNSLTYSVLINGFLYKRDFETGKALICNLWERMKGELDSSVNNAAFAHLVDSLCLVGSF 287

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +EVF IAEDMPQG+SV EEFA G MIDSLC++ R HGASR+VY+MRK+GL P L+SYNSI
Sbjct: 288 HEVFTIAEDMPQGQSVPEEFAYGQMIDSLCKAKRYHGASRIVYIMRKKGLNPGLLSYNSI 347

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +HGL K GGCMRAYQLL EG++FGY PSEHTYKVL+EGLC E D +KA++VLQ M+ K+ 
Sbjct: 348 IHGLSKEGGCMRAYQLLVEGVEFGYSPSEHTYKVLLEGLCKELDTQKAKEVLQIMIHKQG 407

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           VDRTRI NIYLRA+CL  N TELLN LV MLQT CQPDVITLNTVI GFCK+G IEEALK
Sbjct: 408 VDRTRIYNIYLRAVCLTNNSTELLNTLVEMLQTNCQPDVITLNTVIKGFCKVGSIEEALK 467

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           VLNDM+ GKFC PD VTFTTIIFGLLNVGRI+E+L++LY+VMP++G  PG++TYNA +RG
Sbjct: 468 VLNDMIGGKFCTPDHVTFTTIIFGLLNVGRIRESLDILYKVMPEKGIVPGVITYNATIRG 527

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           LF+L++  +A   F+ M+  G+ ADSTTYA+VIDGLC+ NQ++E KRFW DIVWPS IHD
Sbjct: 528 LFKLQQANQAMNTFDRMVRNGIQADSTTYAVVIDGLCDCNQIEEVKRFWKDIVWPSKIHD 587

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
           ++VY+A++KGLC S K +EA HFLYEL DSGV+P I CYN+VI+ ACKL +K EAY++++
Sbjct: 588 SFVYSAILKGLCHSSKFNEACHFLYELSDSGVSPTIFCYNIVINTACKLGLKGEAYRLVK 647

Query: 481 EMRKNGLNPDAVTWRILDKLHGNRGN 506
           EMRKNGL PDAVTWRIL KLH N  +
Sbjct: 648 EMRKNGLAPDAVTWRILHKLHQNETD 673



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 125/537 (23%), Positives = 214/537 (39%), Gaps = 83/537 (15%)

Query: 4   LCGLSR-VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           LC   R V EA +L   ++  G+  + ++  ++IHG C       A+  F        +P
Sbjct: 63  LCTKDRNVDEALQLLDALRLHGYQFHPLNLASVIHGLCDAHRFHEAHCRFMLSIASRCVP 122

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           +  T +VL+  +L  R       L+  L++   E     VN   +  L+D  C     N 
Sbjct: 123 DERTCNVLIARLLDYRSPYCTLRLLVCLFDAKPEFVPSIVN---YNRLIDQFCSFSLPNV 179

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
             R                                   V++ M+ RG  P++VSY +++ 
Sbjct: 180 AHR-----------------------------------VLFDMKSRGHCPNVVSYTALID 204

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVL----QFMLSK 238
           G C+      A +L +E       P+  TY VL+ G   + D E  + ++    + M  +
Sbjct: 205 GYCRVCNVSAAEKLFDEMPGNYVEPNSLTYSVLINGFLYKRDFETGKALICNLWERMKGE 264

Query: 239 KDVDRTRICNIYL-RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
            D         +L  +LCL+ +  E+  +   M Q Q  P+      +I+  CK  R   
Sbjct: 265 LDSSVNNAAFAHLVDSLCLVGSFHEVFTIAEDMPQGQSVPEEFAYGQMIDSLCKAKRYHG 324

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           A +++  M   K   P  +++ +II GL   G    A  LL + + + GYSP   TY  +
Sbjct: 325 ASRIVYIM-RKKGLNPGLLSYNSIIHGLSKEGGCMRAYQLLVEGV-EFGYSPSEHTYKVL 382

Query: 358 LRGLFRLRRVEEAKEVFNC-----------------------------------MLGIGV 382
           L GL +    ++AKEV                                      ML    
Sbjct: 383 LEGLCKELDTQKAKEVLQIMIHKQGVDRTRIYNIYLRAVCLTNNSTELLNTLVEMLQTNC 442

Query: 383 VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN-IHDNYVYAAMIKGLCRSGKIHEAV 441
             D  T   VI G C+   ++EA +  +D++       D+  +  +I GL   G+I E++
Sbjct: 443 QPDVITLNTVIKGFCKVGSIEEALKVLNDMIGGKFCTPDHVTFTTIIFGLLNVGRIRESL 502

Query: 442 HFLYELV-DSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
             LY+++ + G+ P ++ YN  I G  KL    +A      M +NG+  D+ T+ ++
Sbjct: 503 DILYKVMPEKGIVPGVITYNATIRGLFKLQQANQAMNTFDRMVRNGIQADSTTYAVV 559



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 84/325 (25%), Positives = 145/325 (44%), Gaps = 10/325 (3%)

Query: 181 VHGLC-KHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           +HGLC K      A QLL+     GY         ++ GLC      +A       ++ +
Sbjct: 60  IHGLCTKDRNVDEALQLLDALRLHGYQFHPLNLASVIHGLCDAHRFHEAHCRFMLSIASR 119

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQ--PDVITLNTVINGFCKMGRIEE 297
            V   R CN+ +  L   ++P   L +LV +   + +  P ++  N +I+ FC       
Sbjct: 120 CVPDERTCNVLIARLLDYRSPYCTLRLLVCLFDAKPEFVPSIVNYNRLIDQFCSFSLPNV 179

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           A +VL DM +   C P+ V++T +I G   V  +  A   L+  MP     P  +TY+ +
Sbjct: 180 AHRVLFDMKSRGHC-PNVVSYTALIDGYCRVCNVSAA-EKLFDEMPGNYVEPNSLTYSVL 237

Query: 358 LRGLFRLRRVEEAK----EVFNCMLG-IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI 412
           + G    R  E  K     ++  M G +    ++  +A ++D LC      E     +D+
Sbjct: 238 INGFLYKRDFETGKALICNLWERMKGELDSSVNNAAFAHLVDSLCLVGSFHEVFTIAEDM 297

Query: 413 VWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMK 472
               ++ + + Y  MI  LC++ + H A   +Y +   G+ P ++ YN +I G  K    
Sbjct: 298 PQGQSVPEEFAYGQMIDSLCKAKRYHGASRIVYIMRKKGLNPGLLSYNSIIHGLSKEGGC 357

Query: 473 REAYQILREMRKNGLNPDAVTWRIL 497
             AYQ+L E  + G +P   T+++L
Sbjct: 358 MRAYQLLVEGVEFGYSPSEHTYKVL 382



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 77/196 (39%), Gaps = 22/196 (11%)

Query: 314 DAVTFTTIIFGLLNVGR-IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKE 372
           D   +T  I GL    R + EAL LL   +   GY    +   +V+ GL    R  EA  
Sbjct: 52  DVSYWTKKIHGLCTKDRNVDEALQLL-DALRLHGYQFHPLNLASVIHGLCDAHRFHEAHC 110

Query: 373 VFNCMLGIGVVADSTTYAIVIDGLCESNQ-----------LDEAKRFWDDIVWPSNIHDN 421
            F   +    V D  T  ++I  L +               D    F   IV        
Sbjct: 111 RFMLSIASRCVPDERTCNVLIARLLDYRSPYCTLRLLVCLFDAKPEFVPSIV-------- 162

Query: 422 YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
             Y  +I   C     + A   L+++   G  PN+V Y  +IDG C++     A ++  E
Sbjct: 163 -NYNRLIDQFCSFSLPNVAHRVLFDMKSRGHCPNVVSYTALIDGYCRVCNVSAAEKLFDE 221

Query: 482 MRKNGLNPDAVTWRIL 497
           M  N + P+++T+ +L
Sbjct: 222 MPGNYVEPNSLTYSVL 237


>gi|449439559|ref|XP_004137553.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g18020-like [Cucumis sativus]
          Length = 646

 Score =  718 bits (1853), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/512 (66%), Positives = 408/512 (79%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +DQ C  S    AH++ FDMKSRGH PNVVSYT LI GYCR   +  A K+FDEM    V
Sbjct: 135 IDQFCSFSLPNVAHRVLFDMKSRGHCPNVVSYTALIDGYCRVCNVSAAEKLFDEMPGNYV 194

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PNSLTYSVL+ G L  RD E    L+  LWERMK E D SVNNAAFA+LVDSLC  G  
Sbjct: 195 EPNSLTYSVLINGFLYKRDFETGKALICNLWERMKGELDSSVNNAAFAHLVDSLCLVGSF 254

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +EVF IAEDMPQG+SV EEFA G MIDSLC++ R HGASR+VY+MRK+GL P L+SYNSI
Sbjct: 255 HEVFTIAEDMPQGQSVPEEFAYGQMIDSLCKAKRYHGASRIVYIMRKKGLNPGLLSYNSI 314

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +HGL K GGCMRAYQLL EG++FGY PSEHTYKVL+EGLC E D +KA++VLQ M+ K+ 
Sbjct: 315 IHGLSKEGGCMRAYQLLVEGVEFGYSPSEHTYKVLLEGLCKELDTQKAKEVLQIMIHKQG 374

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           VDRTRI NIYLRA+CL  N TELLN LV MLQT CQPDVITLNTVI GFCK+G IEEALK
Sbjct: 375 VDRTRIYNIYLRAVCLTNNSTELLNTLVEMLQTNCQPDVITLNTVIKGFCKVGSIEEALK 434

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           VLNDM+ GKFC PD VTFTTIIFGLLNVGRI+E+L++LY+VMP++G  PG++TYNA +RG
Sbjct: 435 VLNDMIGGKFCTPDHVTFTTIIFGLLNVGRIRESLDILYKVMPEKGIVPGVITYNATIRG 494

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           LF+L++  +A   F+ M+  G+ ADSTTYA+VIDGLC+ NQ++E KRFW DIVWPS IHD
Sbjct: 495 LFKLQQANQAMNTFDRMVRNGIQADSTTYAVVIDGLCDCNQIEEVKRFWKDIVWPSKIHD 554

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
           ++VY+A++KGLC S K +EA HFLYEL DSGV+P I CYN+VI+ ACKL +K EAY++++
Sbjct: 555 SFVYSAILKGLCHSSKFNEACHFLYELSDSGVSPTIFCYNIVINTACKLGLKGEAYRLVK 614

Query: 481 EMRKNGLNPDAVTWRILDKLHGNRGNDFGLRI 512
           EMRKNGL PDAVTWRIL KLH N  ++   RI
Sbjct: 615 EMRKNGLAPDAVTWRILHKLHQNETDNPLPRI 646



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 125/537 (23%), Positives = 214/537 (39%), Gaps = 83/537 (15%)

Query: 4   LCGLSR-VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           LC   R V EA +L   ++  G+  + ++  ++IHG C       A+  F        +P
Sbjct: 30  LCTKDRNVDEALQLLDALRLHGYQFHPLNLASVIHGLCDAHRFHEAHCRFMLSIASRCVP 89

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           +  T +VL+  +L  R       L+  L++   E     VN   +  L+D  C     N 
Sbjct: 90  DERTCNVLIARLLDYRSPYCTLRLLVCLFDAKPEFVPSIVN---YNRLIDQFCSFSLPNV 146

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
             R                                   V++ M+ RG  P++VSY +++ 
Sbjct: 147 AHR-----------------------------------VLFDMKSRGHCPNVVSYTALID 171

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVL----QFMLSK 238
           G C+      A +L +E       P+  TY VL+ G   + D E  + ++    + M  +
Sbjct: 172 GYCRVCNVSAAEKLFDEMPGNYVEPNSLTYSVLINGFLYKRDFETGKALICNLWERMKGE 231

Query: 239 KDVDRTRICNIYL-RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
            D         +L  +LCL+ +  E+  +   M Q Q  P+      +I+  CK  R   
Sbjct: 232 LDSSVNNAAFAHLVDSLCLVGSFHEVFTIAEDMPQGQSVPEEFAYGQMIDSLCKAKRYHG 291

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           A +++  M   K   P  +++ +II GL   G    A  LL + + + GYSP   TY  +
Sbjct: 292 ASRIVYIM-RKKGLNPGLLSYNSIIHGLSKEGGCMRAYQLLVEGV-EFGYSPSEHTYKVL 349

Query: 358 LRGLFRLRRVEEAKEVFNC-----------------------------------MLGIGV 382
           L GL +    ++AKEV                                      ML    
Sbjct: 350 LEGLCKELDTQKAKEVLQIMIHKQGVDRTRIYNIYLRAVCLTNNSTELLNTLVEMLQTNC 409

Query: 383 VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN-IHDNYVYAAMIKGLCRSGKIHEAV 441
             D  T   VI G C+   ++EA +  +D++       D+  +  +I GL   G+I E++
Sbjct: 410 QPDVITLNTVIKGFCKVGSIEEALKVLNDMIGGKFCTPDHVTFTTIIFGLLNVGRIRESL 469

Query: 442 HFLYELV-DSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
             LY+++ + G+ P ++ YN  I G  KL    +A      M +NG+  D+ T+ ++
Sbjct: 470 DILYKVMPEKGIVPGVITYNATIRGLFKLQQANQAMNTFDRMVRNGIQADSTTYAVV 526



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 89/341 (26%), Positives = 153/341 (44%), Gaps = 11/341 (3%)

Query: 166 RKRGLTPSLVSY-NSIVHGLC-KHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGES 223
           R+R  + + VSY    +HGLC K      A QLL+     GY         ++ GLC   
Sbjct: 11  RERPESVADVSYWTKKIHGLCTKDRNVDEALQLLDALRLHGYQFHPLNLASVIHGLCDAH 70

Query: 224 DLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQ--PDVIT 281
              +A       ++ + V   R CN+ +  L   ++P   L +LV +   + +  P ++ 
Sbjct: 71  RFHEAHCRFMLSIASRCVPDERTCNVLIARLLDYRSPYCTLRLLVCLFDAKPEFVPSIVN 130

Query: 282 LNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQV 341
            N +I+ FC       A +VL DM +   C P+ V++T +I G   V  +  A   L+  
Sbjct: 131 YNRLIDQFCSFSLPNVAHRVLFDMKSRGHC-PNVVSYTALIDGYCRVCNVSAA-EKLFDE 188

Query: 342 MPQRGYSPGIVTYNAVLRGLFRLRRVEEAK----EVFNCMLG-IGVVADSTTYAIVIDGL 396
           MP     P  +TY+ ++ G    R  E  K     ++  M G +    ++  +A ++D L
Sbjct: 189 MPGNYVEPNSLTYSVLINGFLYKRDFETGKALICNLWERMKGELDSSVNNAAFAHLVDSL 248

Query: 397 CESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNI 456
           C      E     +D+    ++ + + Y  MI  LC++ + H A   +Y +   G+ P +
Sbjct: 249 CLVGSFHEVFTIAEDMPQGQSVPEEFAYGQMIDSLCKAKRYHGASRIVYIMRKKGLNPGL 308

Query: 457 VCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           + YN +I G  K      AYQ+L E  + G +P   T+++L
Sbjct: 309 LSYNSIIHGLSKEGGCMRAYQLLVEGVEFGYSPSEHTYKVL 349


>gi|356566730|ref|XP_003551582.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g18020-like [Glycine max]
          Length = 650

 Score =  704 bits (1817), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/507 (64%), Positives = 408/507 (80%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           MDQ CG     +AH+LFFDM++RGH PNVVS+TTLI+GYC    M  A KVFDEM   GV
Sbjct: 126 MDQFCGAHLPRDAHRLFFDMRNRGHCPNVVSFTTLINGYCSVRAMRDARKVFDEMLESGV 185

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PNS+TYSVL+ GVLR RD+E    LM +LWERM  E + SV  AAFANLVDSLCREG+ 
Sbjct: 186 EPNSVTYSVLIGGVLRERDLEGGRELMCRLWERMSVEVEDSVKTAAFANLVDSLCREGFF 245

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            EVFRIAE++P G   +EE + G M+DSLCR GR +GA+R+VY++RKRG  PS VSYN +
Sbjct: 246 GEVFRIAEELPFGSCFSEEVSYGQMVDSLCRVGRYNGAARIVYLVRKRGFVPSDVSYNHV 305

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +HGL + G CMRAYQLLEEG +FG++ SEHTYKVLVE LC   D++KAR+VL+ ML K+ 
Sbjct: 306 IHGLSRDGDCMRAYQLLEEGAEFGFMLSEHTYKVLVEALCHVMDVDKAREVLKLMLRKEG 365

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           VD+TRI NIYLRALC + NPTELLNVLVFML++QCQ DVITLNTVINGFCKMGR++EA K
Sbjct: 366 VDKTRIYNIYLRALCFVNNPTELLNVLVFMLESQCQADVITLNTVINGFCKMGRVDEASK 425

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           VL+DM+AGKF APD VTFTT+I G+L+  R+ EAL+L ++VMP+ G  P +VTYNA+LRG
Sbjct: 426 VLHDMLAGKFAAPDVVTFTTVISGMLDAARVDEALDLFHKVMPENGLRPSVVTYNALLRG 485

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           LF+L+RV +A   FN M+  G+ ADSTTY +V++GLCES+Q++EAK FW +++WPS +HD
Sbjct: 486 LFKLKRVSDALMAFNNMVSEGITADSTTYTVVVEGLCESDQVEEAKSFWHNVIWPSGVHD 545

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
           N+VYAA++KGLC SGK++EA HFLYELVDSG++PNI  YN++I+ AC L +K EAYQI+R
Sbjct: 546 NFVYAAILKGLCHSGKLNEACHFLYELVDSGISPNIFSYNILINCACNLGLKIEAYQIVR 605

Query: 481 EMRKNGLNPDAVTWRILDKLHGNRGND 507
           EM+KNGL PD+VTWRILDKLHG    D
Sbjct: 606 EMKKNGLTPDSVTWRILDKLHGKVRKD 632



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 102/463 (22%), Positives = 195/463 (42%), Gaps = 71/463 (15%)

Query: 33  TTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWE 92
            T+IH  C +     A+  F        LP+  T +VL+  +L +R   RA       W 
Sbjct: 51  ATIIHSLCNSHRFSEAHHRFSLSLASASLPDERTCNVLLARLLASR-TPRAT------WR 103

Query: 93  RMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRS 152
            ++             +L+ S  + G+V          P   + N       ++D  C +
Sbjct: 104 LLR-------------SLIAS--KPGFV----------PSLVNYNR------LMDQFCGA 132

Query: 153 GRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTY 212
                A R+ + MR RG  P++VS+ ++++G C       A ++ +E ++ G  P+  TY
Sbjct: 133 HLPRDAHRLFFDMRNRGHCPNVVSFTTLINGYCSVRAMRDARKVFDEMLESGVEPNSVTY 192

Query: 213 KVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQ 272
            VL+ G+  E DLE  R+++              C ++ R    +++  +          
Sbjct: 193 SVLIGGVLRERDLEGGRELM--------------CRLWERMSVEVEDSVK---------- 228

Query: 273 TQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQ 332
                       +++  C+ G   E  ++  ++  G  C  + V++  ++  L  VGR  
Sbjct: 229 ------TAAFANLVDSLCREGFFGEVFRIAEELPFGS-CFSEEVSYGQMVDSLCRVGRYN 281

Query: 333 EALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIV 392
            A  ++Y V  +RG+ P  V+YN V+ GL R      A ++       G +    TY ++
Sbjct: 282 GAARIVYLVR-KRGFVPSDVSYNHVIHGLSRDGDCMRAYQLLEEGAEFGFMLSEHTYKVL 340

Query: 393 IDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGV 452
           ++ LC    +D+A+     ++    +    +Y   ++ LC      E ++ L  +++S  
Sbjct: 341 VEALCHVMDVDKAREVLKLMLRKEGVDKTRIYNIYLRALCFVNNPTELLNVLVFMLESQC 400

Query: 453 TPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL-NPDAVTW 494
             +++  N VI+G CK+    EA ++L +M       PD VT+
Sbjct: 401 QADVITLNTVINGFCKMGRVDEASKVLHDMLAGKFAAPDVVTF 443



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 134/297 (45%), Gaps = 11/297 (3%)

Query: 209 EHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLV 268
            H    ++  LC      +A       L+   +   R CN+ L  L   + P     +L 
Sbjct: 47  HHNIATIIHSLCNSHRFSEAHHRFSLSLASASLPDERTCNVLLARLLASRTPRATWRLLR 106

Query: 269 FMLQTQCQ--PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
            ++ ++    P ++  N +++ FC      +A ++  DM     C P+ V+FTT+I G  
Sbjct: 107 SLIASKPGFVPSLVNYNRLMDQFCGAHLPRDAHRLFFDMRNRGHC-PNVVSFTTLINGYC 165

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGV---V 383
           +V  +++A   ++  M + G  P  VTY+ ++ G+ R R +E  +E+  C L   +   V
Sbjct: 166 SVRAMRDARK-VFDEMLESGVEPNSVTYSVLIGGVLRERDLEGGRELM-CRLWERMSVEV 223

Query: 384 ADS---TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEA 440
            DS     +A ++D LC      E  R  +++ + S   +   Y  M+  LCR G+ + A
Sbjct: 224 EDSVKTAAFANLVDSLCREGFFGEVFRIAEELPFGSCFSEEVSYGQMVDSLCRVGRYNGA 283

Query: 441 VHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
              +Y +   G  P+ V YN VI G  +      AYQ+L E  + G      T+++L
Sbjct: 284 ARIVYLVRKRGFVPSDVSYNHVIHGLSRDGDCMRAYQLLEEGAEFGFMLSEHTYKVL 340


>gi|297830438|ref|XP_002883101.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328941|gb|EFH59360.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 689

 Score =  695 bits (1794), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/501 (64%), Positives = 401/501 (80%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++QLC + RV +AHKL FDM++RGH+PNVV++TTLI GYC   E++VA+KVFDEMR CG+
Sbjct: 169 INQLCLIYRVIDAHKLVFDMRNRGHLPNVVTFTTLIGGYCEIRELEVAHKVFDEMRGCGI 228

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PNSLT SVL+ G  + RDVE    LM +LWE MK+E D S+  AAFANLVDS+CREGY 
Sbjct: 229 RPNSLTMSVLIGGFFKMRDVETGRKLMKELWEYMKDEADTSMKTAAFANLVDSMCREGYF 288

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           N++F IAE+MPQ +SVN EF+ GHMIDSLCR  RNHGA+R+VY+M+ +GL P   SYN+I
Sbjct: 289 NDIFEIAENMPQCESVNVEFSYGHMIDSLCRYRRNHGAARIVYIMKSKGLKPRRTSYNAI 348

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +HGLCK GGCMRAYQLLEEG +FG+ PSE+TYK+LVE LC E D  K R VL+ ML K+ 
Sbjct: 349 IHGLCKDGGCMRAYQLLEEGSEFGFFPSEYTYKLLVESLCRELDTGKTRNVLELMLRKEG 408

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
            DRTRI NIYLRALC++ NPTE+LNVLV MLQ  C PD  TLNTV+NGFCKMGR+++A+K
Sbjct: 409 TDRTRIYNIYLRALCVMDNPTEILNVLVSMLQGDCSPDEYTLNTVVNGFCKMGRVDDAMK 468

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           VL DM+ GKFCAPDAVT TT++ GLL+ GR +EAL++L +VMP++   PG+VTYNAV+RG
Sbjct: 469 VLGDMMTGKFCAPDAVTLTTVMCGLLSQGRAEEALDVLNRVMPEKKIKPGVVTYNAVIRG 528

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           LF+L + +EA  VF+ +    V ADSTTYAI+IDGLC ++Q+D AK+FWDD++WPS  HD
Sbjct: 529 LFKLNKGDEAMCVFDQLEKASVTADSTTYAIIIDGLCVTSQVDMAKKFWDDVIWPSGRHD 588

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
            +VYAA +KGLCRSG + +A HFLY+L DSG  PN+VCYN VID   +  +KREAYQIL 
Sbjct: 589 VFVYAAFLKGLCRSGYLSDACHFLYDLADSGAIPNVVCYNTVIDECSRSGLKREAYQILE 648

Query: 481 EMRKNGLNPDAVTWRILDKLH 501
           EMRKNG  PDAVTWRILDKLH
Sbjct: 649 EMRKNGQAPDAVTWRILDKLH 669



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 112/509 (22%), Positives = 217/509 (42%), Gaps = 25/509 (4%)

Query: 3   QLCGLSR-VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVL 61
            +C + R   EA ++   +  RG+ P+ ++ +++IH  C  G  D A++ F      G +
Sbjct: 63  SICAVRRNPDEALRVLDGLCLRGYRPDSLNLSSVIHSLCDAGRFDEAHRRFLLFVASGFI 122

Query: 62  PNSLTYSVLVRGVLRTRDVERANVLMFKLWERM---KEEEDLSVNNAAFANLVDSLCREG 118
           P+  T +V++  +L      R+ V  F + +R+   K+E   S+ N  +  L++ LC   
Sbjct: 123 PDERTCNVIIARLLDL----RSPVSTFGVIQRLIGFKKEFVPSLTN--YNRLINQLCLIY 176

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
            V +  ++  DM     +        +I   C       A +V   MR  G+ P+ ++ +
Sbjct: 177 RVIDAHKLVFDMRNRGHLPNVVTFTTLIGGYCEIRELEVAHKVFDEMRGCGIRPNSLTMS 236

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKV-----LVEGLCGESDLEKARKVLQ 233
            ++ G  K        +L++E  ++    ++ + K      LV+ +C E       ++ +
Sbjct: 237 VLIGGFFKMRDVETGRKLMKELWEYMKDEADTSMKTAAFANLVDSMCREGYFNDIFEIAE 296

Query: 234 FMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMG 293
            M   + V+        + +LC  +       ++  M     +P   + N +I+G CK G
Sbjct: 297 NMPQCESVNVEFSYGHMIDSLCRYRRNHGAARIVYIMKSKGLKPRRTSYNAIIHGLCKDG 356

Query: 294 RIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL---LNVGRIQEALNLLYQVMPQRGYSPG 350
               A ++L +     F  P   T+  ++  L   L+ G+ +  L L    M ++  +  
Sbjct: 357 GCMRAYQLLEEGSEFGF-FPSEYTYKLLVESLCRELDTGKTRNVLEL----MLRKEGTDR 411

Query: 351 IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD 410
              YN  LR L  +    E   V   ML      D  T   V++G C+  ++D+A +   
Sbjct: 412 TRIYNIYLRALCVMDNPTEILNVLVSMLQGDCSPDEYTLNTVVNGFCKMGRVDDAMKVLG 471

Query: 411 DIVWPSN-IHDNYVYAAMIKGLCRSGKIHEAVHFLYELV-DSGVTPNIVCYNVVIDGACK 468
           D++       D      ++ GL   G+  EA+  L  ++ +  + P +V YN VI G  K
Sbjct: 472 DMMTGKFCAPDAVTLTTVMCGLLSQGRAEEALDVLNRVMPEKKIKPGVVTYNAVIRGLFK 531

Query: 469 LSMKREAYQILREMRKNGLNPDAVTWRIL 497
           L+   EA  +  ++ K  +  D+ T+ I+
Sbjct: 532 LNKGDEAMCVFDQLEKASVTADSTTYAII 560


>gi|357506233|ref|XP_003623405.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498420|gb|AES79623.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 737

 Score =  686 bits (1771), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/502 (64%), Positives = 394/502 (78%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           MD  C + R  +AH+LFFDMK+RGH PNVVSYTTLI+GYC  G +  A KVFDEM   G+
Sbjct: 117 MDHFCFIHRPFDAHRLFFDMKNRGHCPNVVSYTTLINGYCSVGGIRDAMKVFDEMLESGL 176

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PNS+TYSVL+RG LR RD E    LM KLWERMK E++LSVN AAFANL+DSLC+EG+ 
Sbjct: 177 EPNSMTYSVLIRGFLRGRDFESGRELMCKLWERMKMEDELSVNVAAFANLIDSLCKEGFF 236

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           NEVF IAE MP G S+ E+   G MIDS C+ GR HGA+R+VY+MRKR   PS VSYN I
Sbjct: 237 NEVFEIAELMPCGSSLPEQVVYGQMIDSFCKVGRYHGAARIVYLMRKRRFVPSDVSYNHI 296

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +HGL K G CMR YQLLEEG +FG+   EHTYKVLVE LC   D++KAR+VL+ ML K+ 
Sbjct: 297 IHGLSKDGDCMRGYQLLEEGAEFGFSLCEHTYKVLVEALCRVLDVDKAREVLKLMLYKEG 356

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           VD+TRI NIYLRALC + NPTELLNVLVFML++ CQ DVITLNTVINGFCKMGR +EALK
Sbjct: 357 VDKTRIYNIYLRALCHVNNPTELLNVLVFMLESHCQTDVITLNTVINGFCKMGRFDEALK 416

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           VLNDM+ GKFCAPD VTFTT+I GLL+  ++ EAL+L  +VMP+ G  PG+VTYN ++R 
Sbjct: 417 VLNDMLLGKFCAPDVVTFTTLISGLLDAEKVDEALDLFNRVMPENGLKPGVVTYNVLIRC 476

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L++L+R  +A EVFN M G G+  DSTTY ++++GLCE +Q++EAK FW  ++WPS IHD
Sbjct: 477 LYKLKRPNDAFEVFNNMAGDGITPDSTTYTVIVEGLCECDQIEEAKSFWQSVIWPSGIHD 536

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
           N+VYAA++KGLC SGK +EA HFLYELVDSG++PNI  YN++I+ AC L +KRE YQI+R
Sbjct: 537 NFVYAAILKGLCSSGKFNEACHFLYELVDSGISPNIYSYNILINCACNLGLKREVYQIVR 596

Query: 481 EMRKNGLNPDAVTWRILDKLHG 502
           EM KNG+ PD VTWRIL KL  
Sbjct: 597 EMNKNGVAPDCVTWRILHKLQS 618



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 119/515 (23%), Positives = 222/515 (43%), Gaps = 86/515 (16%)

Query: 27  PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVL 86
           P+  + +T++H  C +   + A++ F      G +P+  T ++L+  +LR++        
Sbjct: 36  PSQHTISTILHTLCNSNRFEEAHQRFSLFLSSGSIPDHRTCNLLLAKLLRSKTP------ 89

Query: 87  MFKLWERMKEEEDLSVNNAAFANLVDSLC--REGYVNEVFRIAEDMPQGKSVNEEFACGH 144
            F+ W                 +LV SL   + G+V          P   + N       
Sbjct: 90  -FQTW-----------------SLVKSLIQIKAGFV----------PSLVNYNR------ 115

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
           ++D  C   R   A R+ + M+ RG  P++VSY ++++G C  GG   A ++ +E ++ G
Sbjct: 116 LMDHFCFIHRPFDAHRLFFDMKNRGHCPNVVSYTTLINGYCSVGGIRDAMKVFDEMLESG 175

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNI-----YLRALCLIKN 259
             P+  TY VL+ G     D E  R+++  +  +  ++     N+      + +LC    
Sbjct: 176 LEPNSMTYSVLIRGFLRGRDFESGRELMCKLWERMKMEDELSVNVAAFANLIDSLCKEGF 235

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
             E+  +   M      P+ +    +I+ FCK+GR   A +++  M   +F  P  V++ 
Sbjct: 236 FNEVFEIAELMPCGSSLPEQVVYGQMIDSFCKVGRYHGAARIVYLMRKRRF-VPSDVSYN 294

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCML- 378
            II GL   G       LL +   + G+S    TY  ++  L R+  V++A+EV   ML 
Sbjct: 295 HIIHGLSKDGDCMRGYQLLEE-GAEFGFSLCEHTYKVLVEALCRVLDVDKAREVLKLMLY 353

Query: 379 --GIGVV--------------------------------ADSTTYAIVIDGLCESNQLDE 404
             G+                                    D  T   VI+G C+  + DE
Sbjct: 354 KEGVDKTRIYNIYLRALCHVNNPTELLNVLVFMLESHCQTDVITLNTVINGFCKMGRFDE 413

Query: 405 AKRFWDDIVWPSNIHDNYV-YAAMIKGLCRSGKIHEAVHFLYELV-DSGVTPNIVCYNVV 462
           A +  +D++       + V +  +I GL  + K+ EA+     ++ ++G+ P +V YNV+
Sbjct: 414 ALKVLNDMLLGKFCAPDVVTFTTLISGLLDAEKVDEALDLFNRVMPENGLKPGVVTYNVL 473

Query: 463 IDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           I    KL    +A+++   M  +G+ PD+ T+ ++
Sbjct: 474 IRCLYKLKRPNDAFEVFNNMAGDGITPDSTTYTVI 508



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 84/311 (27%), Positives = 149/311 (47%), Gaps = 20/311 (6%)

Query: 201 IQFGYL---PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLI 257
           +QF  L   PS+HT   ++  LC  +  E+A +     LS   +   R CN+ L  L   
Sbjct: 27  LQFSSLSFQPSQHTISTILHTLCNSNRFEEAHQRFSLFLSSGSIPDHRTCNLLLAKLLRS 86

Query: 258 KNPTELLNVLVFMLQTQCQ--PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA 315
           K P +  +++  ++Q +    P ++  N +++ FC + R  +A ++  DM     C P+ 
Sbjct: 87  KTPFQTWSLVKSLIQIKAGFVPSLVNYNRLMDHFCFIHRPFDAHRLFFDMKNRGHC-PNV 145

Query: 316 VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN 375
           V++TT+I G  +VG I++A+  ++  M + G  P  +TY+ ++RG  R R  E  +E+  
Sbjct: 146 VSYTTLINGYCSVGGIRDAMK-VFDEMLESGLEPNSMTYSVLIRGFLRGRDFESGRELMC 204

Query: 376 CM---------LGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAA 426
            +         L + V A    +A +ID LC+    +E     + +   S++ +  VY  
Sbjct: 205 KLWERMKMEDELSVNVAA----FANLIDSLCKEGFFNEVFEIAELMPCGSSLPEQVVYGQ 260

Query: 427 MIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG 486
           MI   C+ G+ H A   +Y +      P+ V YN +I G  K       YQ+L E  + G
Sbjct: 261 MIDSFCKVGRYHGAARIVYLMRKRRFVPSDVSYNHIIHGLSKDGDCMRGYQLLEEGAEFG 320

Query: 487 LNPDAVTWRIL 497
            +    T+++L
Sbjct: 321 FSLCEHTYKVL 331



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 68/304 (22%), Positives = 125/304 (41%), Gaps = 50/304 (16%)

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA---- 298
           +T  C  + ++L  +  P +    ++       QP   T++T+++  C   R EEA    
Sbjct: 2   QTSFCCQWKKSLTFLILPHKPRPFILQFSSLSFQPSQHTISTILHTLCNSNRFEEAHQRF 61

Query: 299 ----------------------------------LKVLNDMVAGKFCAPDAVTFTTIIFG 324
                                             +K L  + AG    P  V +  ++  
Sbjct: 62  SLFLSSGSIPDHRTCNLLLAKLLRSKTPFQTWSLVKSLIQIKAG--FVPSLVNYNRLMDH 119

Query: 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 384
              + R  +A  L +  M  RG+ P +V+Y  ++ G   +  + +A +VF+ ML  G+  
Sbjct: 120 FCFIHRPFDAHRLFFD-MKNRGHCPNVVSYTTLINGYCSVGGIRDAMKVFDEMLESGLEP 178

Query: 385 DSTTYAIVIDGLCESNQLDEAK----RFWDDIVWPSNIHDNY-VYAAMIKGLCRSGKIHE 439
           +S TY+++I G       +  +    + W+ +     +  N   +A +I  LC+ G  +E
Sbjct: 179 NSMTYSVLIRGFLRGRDFESGRELMCKLWERMKMEDELSVNVAAFANLIDSLCKEGFFNE 238

Query: 440 AVHFLYELVDSGVT-PNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILD 498
            V  + EL+  G + P  V Y  +ID  CK+     A +I+  MRK    P  V++  + 
Sbjct: 239 -VFEIAELMPCGSSLPEQVVYGQMIDSFCKVGRYHGAARIVYLMRKRRFVPSDVSYNHI- 296

Query: 499 KLHG 502
            +HG
Sbjct: 297 -IHG 299



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 78/169 (46%), Gaps = 11/169 (6%)

Query: 346 GYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA 405
            + P   T + +L  L    R EEA + F+  L  G + D  T  +++  L  S    + 
Sbjct: 33  SFQPSQHTISTILHTLCNSNRFEEAHQRFSLFLSSGSIPDHRTCNLLLAKLLRSKTPFQT 92

Query: 406 KRFWDDIVWPSNIHDNYV-----YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYN 460
              W  +     I   +V     Y  ++   C   +  +A    +++ + G  PN+V Y 
Sbjct: 93  ---WSLVKSLIQIKAGFVPSLVNYNRLMDHFCFIHRPFDAHRLFFDMKNRGHCPNVVSYT 149

Query: 461 VVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGN-RGNDF 508
            +I+G C +   R+A ++  EM ++GL P+++T+ +L  + G  RG DF
Sbjct: 150 TLINGYCSVGGIRDAMKVFDEMLESGLEPNSMTYSVL--IRGFLRGRDF 196


>gi|15229568|ref|NP_188429.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274006|sp|Q9LSK8.1|PP240_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g18020
 gi|11994208|dbj|BAB01330.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642514|gb|AEE76035.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 688

 Score =  678 bits (1749), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/501 (63%), Positives = 393/501 (78%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M+QLC + RV +AHKL FDM++RGH+P+VV++TTLI GYC   E++VA+KVFDEMR CG+
Sbjct: 169 MNQLCTIYRVIDAHKLVFDMRNRGHLPDVVTFTTLIGGYCEIRELEVAHKVFDEMRVCGI 228

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PNSLT SVL+ G L+ RDVE    LM +LWE MK E D S+  AAFANLVDS+CREGY 
Sbjct: 229 RPNSLTLSVLIGGFLKMRDVETGRKLMKELWEYMKNETDTSMKAAAFANLVDSMCREGYF 288

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           N++F IAE+M   +SVN EFA GHMIDSLCR  RNHGA+R+VY+M+ +GL P   SYN+I
Sbjct: 289 NDIFEIAENMSLCESVNVEFAYGHMIDSLCRYRRNHGAARIVYIMKSKGLKPRRTSYNAI 348

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +HGLCK GGCMRAYQLLEEG +F + PSE+TYK+L+E LC E D  KAR VL+ ML K+ 
Sbjct: 349 IHGLCKDGGCMRAYQLLEEGSEFEFFPSEYTYKLLMESLCKELDTGKARNVLELMLRKEG 408

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
            DRTRI NIYLR LC++ NPTE+LNVLV MLQ  C+PD  TLNTVING CKMGR+++A+K
Sbjct: 409 ADRTRIYNIYLRGLCVMDNPTEILNVLVSMLQGDCRPDEYTLNTVINGLCKMGRVDDAMK 468

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           VL+DM+ GKFCAPDAVT  T++ GLL  GR +EAL++L +VMP+    PG+V YNAV+RG
Sbjct: 469 VLDDMMTGKFCAPDAVTLNTVMCGLLAQGRAEEALDVLNRVMPENKIKPGVVAYNAVIRG 528

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           LF+L + +EA  VF  +    V ADSTTYAI+IDGLC +N++D AK+FWDD++WPS  HD
Sbjct: 529 LFKLHKGDEAMSVFGQLEKASVTADSTTYAIIIDGLCVTNKVDMAKKFWDDVIWPSGRHD 588

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
            +VYAA +KGLC+SG + +A HFLY+L DSG  PN+VCYN VI    +  +KREAYQIL 
Sbjct: 589 AFVYAAFLKGLCQSGYLSDACHFLYDLADSGAIPNVVCYNTVIAECSRSGLKREAYQILE 648

Query: 481 EMRKNGLNPDAVTWRILDKLH 501
           EMRKNG  PDAVTWRILDKLH
Sbjct: 649 EMRKNGQAPDAVTWRILDKLH 669



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 115/507 (22%), Positives = 220/507 (43%), Gaps = 21/507 (4%)

Query: 3   QLCGLSR-VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVL 61
            +C + R   EA ++   +  RG+ P+ ++ +++IH  C  G  D A++ F      G +
Sbjct: 63  SICAVRRNPDEALRILDGLCLRGYRPDSLNLSSVIHSLCDAGRFDEAHRRFLLFLASGFI 122

Query: 62  PNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVN 121
           P+  T +V++  +L +R       ++ +L    K+E   S+ N  +  L++ LC    V 
Sbjct: 123 PDERTCNVIIARLLYSRSPVSTLGVIHRLIG-FKKEFVPSLTN--YNRLMNQLCTIYRVI 179

Query: 122 EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
           +  ++  DM     + +      +I   C       A +V   MR  G+ P+ ++ + ++
Sbjct: 180 DAHKLVFDMRNRGHLPDVVTFTTLIGGYCEIRELEVAHKVFDEMRVCGIRPNSLTLSVLI 239

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKV-----LVEGLCGESDLEKARKVLQFML 236
            G  K        +L++E  ++    ++ + K      LV+ +C E       ++ + M 
Sbjct: 240 GGFLKMRDVETGRKLMKELWEYMKNETDTSMKAAAFANLVDSMCREGYFNDIFEIAENMS 299

Query: 237 SKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIE 296
             + V+        + +LC  +       ++  M     +P   + N +I+G CK G   
Sbjct: 300 LCESVNVEFAYGHMIDSLCRYRRNHGAARIVYIMKSKGLKPRRTSYNAIIHGLCKDGGCM 359

Query: 297 EALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
            A ++L +    +F  P   T+  ++  L       +A N+L  ++ + G     + YN 
Sbjct: 360 RAYQLLEEGSEFEF-FPSEYTYKLLMESLCKELDTGKARNVLELMLRKEGADRTRI-YNI 417

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVW-- 414
            LRGL  +    E   V   ML      D  T   VI+GLC+  ++D+A +  DD++   
Sbjct: 418 YLRGLCVMDNPTEILNVLVSMLQGDCRPDEYTLNTVINGLCKMGRVDDAMKVLDDMMTGK 477

Query: 415 ---PSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELV-DSGVTPNIVCYNVVIDGACKLS 470
              P  +  N V      GL   G+  EA+  L  ++ ++ + P +V YN VI G  KL 
Sbjct: 478 FCAPDAVTLNTVMC----GLLAQGRAEEALDVLNRVMPENKIKPGVVAYNAVIRGLFKLH 533

Query: 471 MKREAYQILREMRKNGLNPDAVTWRIL 497
              EA  +  ++ K  +  D+ T+ I+
Sbjct: 534 KGDEAMSVFGQLEKASVTADSTTYAII 560


>gi|326521552|dbj|BAK00352.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 729

 Score =  544 bits (1402), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 270/489 (55%), Positives = 363/489 (74%), Gaps = 14/489 (2%)

Query: 27  PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERA-NV 85
           P+VVSY TL+ GY    +   A K+ DEM   G+ P+SL  + LV+  LR+RDV  A ++
Sbjct: 113 PSVVSYATLLDGYAGAADPRAAQKLLDEMPRWGLAPSSLARTFLVKAFLRSRDVGAAMDL 172

Query: 86  LMFKLWERMK--EEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKS-VNEEFAC 142
           +  +LW  M+   +ED  + NAAFANLV  LC EG+ + VFR+AE+MPQ +  V +EFA 
Sbjct: 173 VDSQLWTSMERCHDEDQGLKNAAFANLVQCLCGEGFFHIVFRVAEEMPQRRCLVPDEFAY 232

Query: 143 GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLC---KHGGCMRAYQLLEE 199
             MIDSLCR+G++HGASR+VYVM KRGL PS +SYN IVHGLC   K GG +RAYQL+ E
Sbjct: 233 AQMIDSLCRAGQHHGASRIVYVMGKRGLRPSTLSYNCIVHGLCTSQKPGGRLRAYQLVME 292

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS------KKDVD-RTRICNIYLR 252
           G++ GY P E TYKVLVE LC E +L KA+ +L+ ML       K D++ RTR+ N++L 
Sbjct: 293 GVRSGYRPREVTYKVLVEELCREKELAKAKDILELMLQPQCGHDKADMETRTRLYNMFLG 352

Query: 253 ALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCA 312
           AL  + NP+E L+VLV MLQ  C+PDVIT+NTV++GFCK+GR +EA K+L+DM+ GKFCA
Sbjct: 353 ALRAVDNPSEQLSVLVSMLQGDCKPDVITMNTVVHGFCKVGRTQEARKILDDMINGKFCA 412

Query: 313 PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKE 372
           PD VTFTT+I G L+VG   EAL++L+ +MP+R  +P +VTYN+VL+GLF L  V+ A +
Sbjct: 413 PDVVTFTTLISGYLDVGEHAEALHVLHTLMPRRRCAPNVVTYNSVLKGLFCLGLVDRAMQ 472

Query: 373 VFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLC 432
           V + M    + ADS ++ +VI GLC++ QL+EAK FWD++VWPS IHD YVY+A+++GLC
Sbjct: 473 VLDEMKLSSITADSVSHTVVIKGLCDAGQLEEAKAFWDNVVWPSGIHDGYVYSAILRGLC 532

Query: 433 RSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAV 492
           + GK+ +A  FLYEL DSGV P++VCYN++ID ACK   K+ AYQ+++EMR+NGL+PDAV
Sbjct: 533 KLGKLEQACDFLYELADSGVCPSVVCYNILIDTACKQGSKKLAYQLVKEMRRNGLSPDAV 592

Query: 493 TWRILDKLH 501
           TWRIL+KLH
Sbjct: 593 TWRILEKLH 601



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 86/360 (23%), Positives = 152/360 (42%), Gaps = 43/360 (11%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYC---RTGEMDVAYKVFDEMRH 57
           +D LC   +   A ++ + M  RG  P+ +SY  ++HG C   + G    AY++  E   
Sbjct: 236 IDSLCRAGQHHGASRIVYVMGKRGLRPSTLSYNCIVHGLCTSQKPGGRLRAYQLVMEGVR 295

Query: 58  CGVLPNSLTYSVLVRGVLRTRDVERA--------------------------NVLMFKLW 91
            G  P  +TY VLV  + R +++ +A                          N+ +  L 
Sbjct: 296 SGYRPREVTYKVLVEELCREKELAKAKDILELMLQPQCGHDKADMETRTRLYNMFLGALR 355

Query: 92  ERMKEEEDLSV-----------NNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEF 140
                 E LSV           +      +V   C+ G   E  +I +DM  GK    + 
Sbjct: 356 AVDNPSEQLSVLVSMLQGDCKPDVITMNTVVHGFCKVGRTQEARKILDDMINGKFCAPDV 415

Query: 141 AC-GHMIDSLCRSGRNHGASRVVY-VMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLE 198
                +I      G +  A  V++ +M +R   P++V+YNS++ GL   G   RA Q+L+
Sbjct: 416 VTFTTLISGYLDVGEHAEALHVLHTLMPRRRCAPNVVTYNSVLKGLFCLGLVDRAMQVLD 475

Query: 199 EGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIK 258
           E           ++ V+++GLC    LE+A+     ++    +    + +  LR LC + 
Sbjct: 476 EMKLSSITADSVSHTVVIKGLCDAGQLEEAKAFWDNVVWPSGIHDGYVYSAILRGLCKLG 535

Query: 259 NPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTF 318
              +  + L  +  +   P V+  N +I+  CK G  + A +++ +M      +PDAVT+
Sbjct: 536 KLEQACDFLYELADSGVCPSVVCYNILIDTACKQGSKKLAYQLVKEMRRNGL-SPDAVTW 594



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 39/67 (58%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC L ++ +A    +++   G  P+VV Y  LI   C+ G   +AY++  EMR  G+ P+
Sbjct: 531 LCKLGKLEQACDFLYELADSGVCPSVVCYNILIDTACKQGSKKLAYQLVKEMRRNGLSPD 590

Query: 64  SLTYSVL 70
           ++T+ +L
Sbjct: 591 AVTWRIL 597


>gi|357121501|ref|XP_003562458.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g18020-like [Brachypodium distachyon]
          Length = 737

 Score =  531 bits (1368), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 265/491 (53%), Positives = 352/491 (71%), Gaps = 16/491 (3%)

Query: 27  PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERA-NV 85
           P+  SY  L+ GY    +    + + DEM    + P+SL  S L++  LR RDV  A ++
Sbjct: 116 PDAASYGALLGGYASLADARAVHNLLDEMPRRDLAPSSLARSFLIKAFLRGRDVAGAMDL 175

Query: 86  LMFKLW---ERMK-EEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGK-SVNEEF 140
               LW   ER + +EED    NAAFA+L+ SLC EG+ + VF +A++MPQ +  V +EF
Sbjct: 176 AETHLWPATERTRGDEEDQGTKNAAFAHLLQSLCAEGFFHVVFHVADEMPQRRCRVPDEF 235

Query: 141 ACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLC---KHGGCMRAYQLL 197
               M+DSLCR+G++HGASR+VYVM KRG+ PS VSYN IVHGLC   K GG +RAYQL+
Sbjct: 236 VYAQMVDSLCRAGQHHGASRIVYVMGKRGVCPSTVSYNCIVHGLCTSQKPGGRLRAYQLV 295

Query: 198 EEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK-------KDVDRTRICNIY 250
            EG+ FGY P E TYKVLVE LC E ++ KA+ VL+ ML          D  RTR+ N++
Sbjct: 296 MEGVHFGYRPREVTYKVLVEELCREKEVAKAKDVLELMLQPHCAYDKPDDETRTRLYNMF 355

Query: 251 LRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKF 310
           L AL  ++NP+E L VL+ MLQ +C PDVIT+NTV++GFCK+GR +EA ++L+DM+ GKF
Sbjct: 356 LGALHAVENPSEQLGVLMSMLQEECAPDVITMNTVVHGFCKVGRAQEARRILDDMINGKF 415

Query: 311 CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEA 370
           C PD VTFTT+I G L+VG   EALN+L+ +MP+R  SP IVTYN+VL+GLF L  V+ A
Sbjct: 416 CPPDVVTFTTLISGYLDVGEHAEALNVLHTLMPRRRCSPNIVTYNSVLKGLFCLGLVDSA 475

Query: 371 KEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKG 430
            +V + M    VVADS T+ +VI GLC++ QL++AK FWD++VWPS IHD YVY+A+ +G
Sbjct: 476 MQVIDEMKLNNVVADSVTHTVVIKGLCDAGQLEKAKGFWDNVVWPSGIHDGYVYSAIFRG 535

Query: 431 LCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD 490
           LC+ GK+ +A  FLYELVDSGV P +VCYN+++D ACK  MK+ AYQ+++EMR+NGL+PD
Sbjct: 536 LCKLGKLEQACDFLYELVDSGVFPGVVCYNILVDTACKQGMKKLAYQLVKEMRRNGLSPD 595

Query: 491 AVTWRILDKLH 501
           AVTWRILDKLH
Sbjct: 596 AVTWRILDKLH 606



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 87/360 (24%), Positives = 158/360 (43%), Gaps = 43/360 (11%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYC---RTGEMDVAYKVFDEMRH 57
           +D LC   +   A ++ + M  RG  P+ VSY  ++HG C   + G    AY++  E  H
Sbjct: 241 VDSLCRAGQHHGASRIVYVMGKRGVCPSTVSYNCIVHGLCTSQKPGGRLRAYQLVMEGVH 300

Query: 58  CGVLPNSLTYSVLVRGVLRTRDVERA-NVLMFKL-----WERMKEE-------------- 97
            G  P  +TY VLV  + R ++V +A +VL   L     +++  +E              
Sbjct: 301 FGYRPREVTYKVLVEELCREKEVAKAKDVLELMLQPHCAYDKPDDETRTRLYNMFLGALH 360

Query: 98  -----------------EDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEF 140
                            E+ + +      +V   C+ G   E  RI +DM  GK    + 
Sbjct: 361 AVENPSEQLGVLMSMLQEECAPDVITMNTVVHGFCKVGRAQEARRILDDMINGKFCPPDV 420

Query: 141 AC-GHMIDSLCRSGRNHGASRVVY-VMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLE 198
                +I      G +  A  V++ +M +R  +P++V+YNS++ GL   G    A Q+++
Sbjct: 421 VTFTTLISGYLDVGEHAEALNVLHTLMPRRRCSPNIVTYNSVLKGLFCLGLVDSAMQVID 480

Query: 199 EGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIK 258
           E      +    T+ V+++GLC    LEKA+     ++    +    + +   R LC + 
Sbjct: 481 EMKLNNVVADSVTHTVVIKGLCDAGQLEKAKGFWDNVVWPSGIHDGYVYSAIFRGLCKLG 540

Query: 259 NPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTF 318
              +  + L  ++ +   P V+  N +++  CK G  + A +++ +M      +PDAVT+
Sbjct: 541 KLEQACDFLYELVDSGVFPGVVCYNILVDTACKQGMKKLAYQLVKEMRRNGL-SPDAVTW 599



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 38/67 (56%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC L ++ +A    +++   G  P VV Y  L+   C+ G   +AY++  EMR  G+ P+
Sbjct: 536 LCKLGKLEQACDFLYELVDSGVFPGVVCYNILVDTACKQGMKKLAYQLVKEMRRNGLSPD 595

Query: 64  SLTYSVL 70
           ++T+ +L
Sbjct: 596 AVTWRIL 602


>gi|242051268|ref|XP_002463378.1| hypothetical protein SORBIDRAFT_02g042720 [Sorghum bicolor]
 gi|241926755|gb|EER99899.1| hypothetical protein SORBIDRAFT_02g042720 [Sorghum bicolor]
          Length = 782

 Score =  530 bits (1366), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 273/542 (50%), Positives = 357/542 (65%), Gaps = 46/542 (8%)

Query: 3   QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
            LC    V  AH+L   M   G  P+ VSY  L+ GY R  +   A ++ DEM   GV+P
Sbjct: 98  HLCRAGHVLLAHRLLLRM---GAAPDAVSYAALLDGYARVPDPRAARRLLDEMPARGVVP 154

Query: 63  NSLTYSVLVRGVLRTRDVERANVLM-FKLWE----------RMKEEEDLSVNNAAFANLV 111
            SL  S L + +LR RDV+ A  L+   LW               EED  V NAAFANLV
Sbjct: 155 TSLARSFLAKALLRARDVDAAMRLVDTALWPPNGVAGGDRLGGGGEEDQEVTNAAFANLV 214

Query: 112 DSLCREGYVNEVFRIAEDMPQGK-SVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGL 170
             LC EG+ + VFR+AE+MPQ +  V ++FA   MIDSLCR+G++HGASR+VY+MRKRG+
Sbjct: 215 QCLCAEGFFHVVFRVAEEMPQRRCGVGDDFAYSQMIDSLCRAGQHHGASRIVYIMRKRGM 274

Query: 171 TPSLVSYNSIVHGLC---KHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEK 227
            PS VSYN IVHGLC   K G C+RA+QL+ EG  FGY   E TYKVLV+ LC E++L K
Sbjct: 275 RPSDVSYNCIVHGLCTSPKPGACLRAHQLVMEGTSFGYRLREVTYKVLVDELCRENELAK 334

Query: 228 ARKVLQFMLSKK----------------------------DVDRTRICNIYLRALCLIKN 259
           A+ VL+ ML                               +  RTRI N++L AL ++ N
Sbjct: 335 AKDVLELMLQPTVQCGQDSSGDAGEETRTRLYNVFLGALGEETRTRIYNVFLGALRVVDN 394

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
           P+E L VLV MLQ  C+PDVIT+NTVI+GFCK GR +EA ++++DM++GKFCAPD VTFT
Sbjct: 395 PSEQLGVLVSMLQAGCKPDVITMNTVIHGFCKSGRTQEARRIMDDMLSGKFCAPDVVTFT 454

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
           T+I G L  G   EAL++L+ +MP+R  SP +VTYN VL+GLF + +V+ A +V   M  
Sbjct: 455 TLISGYLGAGDHAEALDVLHNLMPRRRCSPTVVTYNCVLKGLFGIGQVDTAMQVLEEMSA 514

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
             +VADS TY +VI GLC++  L++AK FWD++VWPS IHD+YVY+A+ KGLC+  K+ +
Sbjct: 515 NKIVADSVTYTVVIKGLCDAGLLEKAKEFWDNVVWPSGIHDDYVYSAIFKGLCKQKKLEQ 574

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
           A  FLYELVD GV P++VCYN++ID ACK    + AYQ+++EM++NGL PDAVTWRIL K
Sbjct: 575 ACDFLYELVDCGVAPSVVCYNILIDAACKQGSNKLAYQLVKEMKRNGLAPDAVTWRILSK 634

Query: 500 LH 501
           LH
Sbjct: 635 LH 636



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 98/409 (23%), Positives = 181/409 (44%), Gaps = 56/409 (13%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYC---RTGEMDVAYKVFDEMRH 57
           +D LC   +   A ++ + M+ RG  P+ VSY  ++HG C   + G    A+++  E   
Sbjct: 250 IDSLCRAGQHHGASRIVYIMRKRGMRPSDVSYNCIVHGLCTSPKPGACLRAHQLVMEGTS 309

Query: 58  CGVLPNSLTYSVLVRGVLRTRDVERA-NVLMFKLWERMKEEEDLSVNNAAFANLVDSLCR 116
            G     +TY VLV  + R  ++ +A +VL   L   ++  +D S +            R
Sbjct: 310 FGYRLREVTYKVLVDELCRENELAKAKDVLELMLQPTVQCGQDSSGDAGEET-------R 362

Query: 117 EGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVS 176
               N       +  + +  N       ++D+        G   V+  M + G  P +++
Sbjct: 363 TRLYNVFLGALGEETRTRIYNVFLGALRVVDN---PSEQLG---VLVSMLQAGCKPDVIT 416

Query: 177 YNSIVHGLCKHGGCMRAYQLLEEGIQFGY-LPSEHTYKVLVEGLCGESDLEKARKVLQFM 235
            N+++HG CK G    A +++++ +   +  P   T+  L+ G  G  D  +A  VL  +
Sbjct: 417 MNTVIHGFCKSGRTQEARRIMDDMLSGKFCAPDVVTFTTLISGYLGAGDHAEALDVLHNL 476

Query: 236 LSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 295
           + ++                                  +C P V+T N V+ G   +G++
Sbjct: 477 MPRR----------------------------------RCSPTVVTYNCVLKGLFGIGQV 502

Query: 296 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN 355
           + A++VL +M A K  A D+VT+T +I GL + G +++A      V+   G     V Y+
Sbjct: 503 DTAMQVLEEMSANKIVA-DSVTYTVVIKGLCDAGLLEKAKEFWDNVVWPSGIHDDYV-YS 560

Query: 356 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE--SNQL 402
           A+ +GL + +++E+A +    ++  GV      Y I+ID  C+  SN+L
Sbjct: 561 AIFKGLCKQKKLEQACDFLYELVDCGVAPSVVCYNILIDAACKQGSNKL 609



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 90/438 (20%), Positives = 167/438 (38%), Gaps = 57/438 (13%)

Query: 110 LVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRS--GRNHGASRVVYVMRK 167
           LVD+LC  G   E  R A  +    +   +    H  D++ R     +     +  +   
Sbjct: 26  LVDALCASGRSAEAHRRASLLLLSPACRLD---AHAADAILRRLLRADTPLLTLRLLQLL 82

Query: 168 RGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEK 227
               PSL + N ++  LC+ G  + A++LL   ++ G  P   +Y  L++G     D   
Sbjct: 83  PTTAPSLPNRNRLLAHLCRAGHVLLAHRLL---LRMGAAPDAVSYAALLDGYARVPDPRA 139

Query: 228 ARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFML------------QTQC 275
           AR++L  M ++  V  +   +   +AL   ++    + ++   L                
Sbjct: 140 ARRLLDEMPARGVVPTSLARSFLAKALLRARDVDAAMRLVDTALWPPNGVAGGDRLGGGG 199

Query: 276 QPDVITLNT----VINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRI 331
           + D    N     ++   C  G      +V  +M   +    D   ++ +I  L   G+ 
Sbjct: 200 EEDQEVTNAAFANLVQCLCAEGFFHVVFRVAEEMPQRRCGVGDDFAYSQMIDSLCRAGQH 259

Query: 332 QEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCML---GIGVVADSTT 388
             A  ++Y +M +RG  P  V+YN ++ GL    +          ++     G      T
Sbjct: 260 HGASRIVY-IMRKRGMRPSDVSYNCIVHGLCTSPKPGACLRAHQLVMEGTSFGYRLREVT 318

Query: 389 YAIVIDGLCESNQLDEAKRFWDDIVWPS--------------------NIH--------D 420
           Y +++D LC  N+L +AK   + ++ P+                    N+          
Sbjct: 319 YKVLVDELCRENELAKAKDVLELMLQPTVQCGQDSSGDAGEETRTRLYNVFLGALGEETR 378

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
             +Y   +  L       E +  L  ++ +G  P+++  N VI G CK    +EA +I+ 
Sbjct: 379 TRIYNVFLGALRVVDNPSEQLGVLVSMLQAGCKPDVITMNTVIHGFCKSGRTQEARRIMD 438

Query: 481 EMRKNGL-NPDAVTWRIL 497
           +M       PD VT+  L
Sbjct: 439 DMLSGKFCAPDVVTFTTL 456


>gi|414591178|tpg|DAA41749.1| TPA: hypothetical protein ZEAMMB73_033874 [Zea mays]
          Length = 760

 Score =  520 bits (1340), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 260/522 (49%), Positives = 356/522 (68%), Gaps = 28/522 (5%)

Query: 3   QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
            LC    V  AH+    M   G  P+ +SY  L+ GY R  +     ++ DEM   GV P
Sbjct: 98  HLCRAGHVLLAHRFLLRM---GAAPDALSYAALLDGYARAPDARAVQRLLDEMPARGVPP 154

Query: 63  NSLTYSVLVRGVLRTRDVERA-NVLMFKLW------ERMKEEEDLSVNNAAFANLVDSLC 115
            SL  + L + +LR RDV  A +V+   LW      +R++E+++  V +AAFANLV  LC
Sbjct: 155 TSLARTFLAKALLRARDVGAAMDVVDTALWPSAAGGDRLREDQE--VTSAAFANLVQCLC 212

Query: 116 REGYVNEVFRIAEDMPQGK-SVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSL 174
            EG+ + +FR+AE+MPQ +  V ++FA   MIDSLC++G++HGASR+VY+MRKRG+ PS 
Sbjct: 213 AEGFFHVLFRVAEEMPQRRCGVGDDFAYAQMIDSLCQAGQHHGASRIVYIMRKRGICPSA 272

Query: 175 VSYNSIVHGLC---KHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKV 231
           VSYN IVHGLC   K G C+RA+QL+ EG  FGY P E TYKVLV+ LC E++L KA+ V
Sbjct: 273 VSYNCIVHGLCTMPKPGACLRAHQLVMEGTSFGYRPREVTYKVLVDELCRENELAKAKDV 332

Query: 232 LQFMLSKK------------DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDV 279
           L+ ML               +  RTRI N++L AL ++ NP+E L VLV MLQ  C+PDV
Sbjct: 333 LELMLQPTVQCGQDSGGDAGEETRTRIYNVFLGALRVVDNPSEQLGVLVSMLQAGCKPDV 392

Query: 280 ITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLY 339
           IT+NTVI+GFCK  R +EA ++++DM++GKFCAPD VTFTT+I G L  G   +AL++L 
Sbjct: 393 ITMNTVIHGFCKSRRTQEARRIMDDMLSGKFCAPDVVTFTTLISGYLGAGDHAQALDVLR 452

Query: 340 QVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCES 399
            +MP+R  SP +VTYN VL+GLF + +V+ A +V   M    V AD  T+ +VI GLC++
Sbjct: 453 SLMPRRRCSPTVVTYNCVLKGLFGVGQVDTAMQVLEEMSANKVAADPVTHTVVIKGLCDA 512

Query: 400 NQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCY 459
             L++AK FWD++VWPS IHD+YVY+A+ +GLC+  K+ +A  FLYELVD GV P++VCY
Sbjct: 513 GLLEKAKEFWDNVVWPSGIHDDYVYSAVFRGLCKQMKLEQACDFLYELVDCGVAPSVVCY 572

Query: 460 NVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLH 501
           N++ID ACK    + AYQ+++EM++NGL PDA+TWRIL KLH
Sbjct: 573 NILIDAACKQGSNKLAYQLVKEMKRNGLAPDAITWRILSKLH 614



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 94/413 (22%), Positives = 180/413 (43%), Gaps = 41/413 (9%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYC---RTGEMDVAYKVFDEMRH 57
           +D LC   +   A ++ + M+ RG  P+ VSY  ++HG C   + G    A+++  E   
Sbjct: 244 IDSLCQAGQHHGASRIVYIMRKRGICPSAVSYNCIVHGLCTMPKPGACLRAHQLVMEGTS 303

Query: 58  CGVLPNSLTYSVLVRGVLRTRDVERA-NVLMFKLWERMKEEEDLSVNNAAFANLVDSLCR 116
            G  P  +TY VLV  + R  ++ +A +VL   L   ++  +D                 
Sbjct: 304 FGYRPREVTYKVLVDELCRENELAKAKDVLELMLQPTVQCGQDSG--------------- 348

Query: 117 EGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVS 176
            G   E  R        +  N       ++D+        G   V+  M + G  P +++
Sbjct: 349 -GDAGEETRT-------RIYNVFLGALRVVDN---PSEQLG---VLVSMLQAGCKPDVIT 394

Query: 177 YNSIVHGLCKHGGCMRAYQLLEEGIQFGY-LPSEHTYKVLVEGLCGESDLEKARKVLQFM 235
            N+++HG CK      A +++++ +   +  P   T+  L+ G  G  D  +A  VL+ +
Sbjct: 395 MNTVIHGFCKSRRTQEARRIMDDMLSGKFCAPDVVTFTTLISGYLGAGDHAQALDVLRSL 454

Query: 236 LSKKDVDRTRIC-NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGR 294
           + ++    T +  N  L+ L  +      + VL  M   +   D +T   VI G C  G 
Sbjct: 455 MPRRRCSPTVVTYNCVLKGLFGVGQVDTAMQVLEEMSANKVAADPVTHTVVIKGLCDAGL 514

Query: 295 IEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTY 354
           +E+A +  +++V       D V ++ +  GL    ++++A + LY+++   G +P +V Y
Sbjct: 515 LEKAKEFWDNVVWPSGIHDDYV-YSAVFRGLCKQMKLEQACDFLYELV-DCGVAPSVVCY 572

Query: 355 NAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKR 407
           N ++    +    + A ++   M   G+  D+ T+ I    L + +  DE +R
Sbjct: 573 NILIDAACKQGSNKLAYQLVKEMKRNGLAPDAITWRI----LSKLHHYDEEER 621



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 72/347 (20%), Positives = 139/347 (40%), Gaps = 32/347 (9%)

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
           N ++  LC+ G  + A++ L   ++ G  P   +Y  L++G     D    +++L  M +
Sbjct: 93  NRLLAHLCRAGHVLLAHRFL---LRMGAAPDALSYAALLDGYARAPDARAVQRLLDEMPA 149

Query: 238 KKDVDRTRICNIYL-RALCLIKNPTELLNVLVFMLQTQC----------QPDVITLNTVI 286
           +  V  T +   +L +AL   ++    ++V+   L              +        ++
Sbjct: 150 RG-VPPTSLARTFLAKALLRARDVGAAMDVVDTALWPSAAGGDRLREDQEVTSAAFANLV 208

Query: 287 NGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
              C  G      +V  +M   +    D   +  +I  L   G+   A  ++Y +M +RG
Sbjct: 209 QCLCAEGFFHVLFRVAEEMPQRRCGVGDDFAYAQMIDSLCQAGQHHGASRIVY-IMRKRG 267

Query: 347 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCML---GIGVVADSTTYAIVIDGLCESNQLD 403
             P  V+YN ++ GL  + +          ++     G      TY +++D LC  N+L 
Sbjct: 268 ICPSAVSYNCIVHGLCTMPKPGACLRAHQLVMEGTSFGYRPREVTYKVLVDELCRENELA 327

Query: 404 EAKRFWDDIVWPS------------NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 451
           +AK   + ++ P+                  +Y   +  L       E +  L  ++ +G
Sbjct: 328 KAKDVLELMLQPTVQCGQDSGGDAGEETRTRIYNVFLGALRVVDNPSEQLGVLVSMLQAG 387

Query: 452 VTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL-NPDAVTWRIL 497
             P+++  N VI G CK    +EA +I+ +M       PD VT+  L
Sbjct: 388 CKPDVITMNTVIHGFCKSRRTQEARRIMDDMLSGKFCAPDVVTFTTL 434


>gi|125559578|gb|EAZ05114.1| hypothetical protein OsI_27306 [Oryza sativa Indica Group]
          Length = 737

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 252/476 (52%), Positives = 345/476 (72%), Gaps = 9/476 (1%)

Query: 35  LIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFK-LWER 93
           L+ GY R  +     K+ DEM   GV P+SL  + LV+ +LR+RDV+ A  L+   LW  
Sbjct: 129 LLDGYARIPDPRAVRKLLDEMPRRGVAPSSLARTYLVKALLRSRDVDGAMALVDNHLWSS 188

Query: 94  MKEE--EDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGK-SVNEEFACGHMIDSLC 150
           M+    ED  + NAAFANLV  LC EG+ + VFRIAE+MPQ +  V + FA   MIDSLC
Sbjct: 189 MERSNGEDQELKNAAFANLVQCLCIEGFFHIVFRIAEEMPQQRCGVADVFAYSQMIDSLC 248

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLC---KHGGCMRAYQLLEEGIQFGYLP 207
           RSG++HGASR+VY+M KRG+ PS VSYN IVHGLC   K GG +RAYQL+ EG++F Y P
Sbjct: 249 RSGQHHGASRIVYIMGKRGMYPSTVSYNCIVHGLCTSQKPGGRLRAYQLVMEGVRFRYHP 308

Query: 208 SEHTYKVLVEGLCGESDLEKARKVLQFML--SKKDVDRTRICNIYLRALCLIKNPTELLN 265
            E TYKVLV+ LC E++L KA+ V++ ML  +  D  RTRI N++L AL ++ NP+E L+
Sbjct: 309 REVTYKVLVDELCRENELAKAKDVMELMLKVTPDDDTRTRIYNMFLAALRVVDNPSEQLD 368

Query: 266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 325
           VLV MLQ  C+PDVIT+NTVI+GFCK+GR +EA ++++DM+ GKFCAPD VTFTT+I G 
Sbjct: 369 VLVSMLQEGCKPDVITMNTVIHGFCKVGRAQEARRIVDDMLNGKFCAPDVVTFTTLISGY 428

Query: 326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 385
           L VG   EAL++L  +MP+    P +VTYN VL+GL  L  ++ A E    M    V+ D
Sbjct: 429 LGVGEFAEALHVLSTLMPKHQCLPNVVTYNCVLKGLLSLGLLDRAMEALEEMKSSNVIPD 488

Query: 386 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY 445
           S T+ ++I G C++ +L++AK FWD+++WPS +HD+YVY+A+ +GLC+ GK+ +A  FLY
Sbjct: 489 SVTHTVMIKGFCDAGELEKAKSFWDNVIWPSGMHDDYVYSAIFRGLCKLGKLEQACDFLY 548

Query: 446 ELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLH 501
           ELVDSGV P ++CYN+++D ACK  +K+  YQ+++EMR+NG++PDAVTWRI+D+LH
Sbjct: 549 ELVDSGVAPGVLCYNILVDAACKQGLKKLVYQLVKEMRRNGISPDAVTWRIIDRLH 604



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 88/397 (22%), Positives = 169/397 (42%), Gaps = 45/397 (11%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYC---RTGEMDVAYKVFDEMRH 57
           +D LC   +   A ++ + M  RG  P+ VSY  ++HG C   + G    AY++  E   
Sbjct: 244 IDSLCRSGQHHGASRIVYIMGKRGMYPSTVSYNCIVHGLCTSQKPGGRLRAYQLVMEGVR 303

Query: 58  CGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCRE 117
               P  +TY VLV  + R  ++ +A  +M +L  ++  ++D                  
Sbjct: 304 FRYHPREVTYKVLVDELCRENELAKAKDVM-ELMLKVTPDDDT----------------- 345

Query: 118 GYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
                         + +  N   A   ++D+            V+  M + G  P +++ 
Sbjct: 346 --------------RTRIYNMFLAALRVVDNPSEQ------LDVLVSMLQEGCKPDVITM 385

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGY-LPSEHTYKVLVEGLCGESDLEKARKVLQFML 236
           N+++HG CK G    A +++++ +   +  P   T+  L+ G  G  +  +A  VL  ++
Sbjct: 386 NTVIHGFCKVGRAQEARRIVDDMLNGKFCAPDVVTFTTLISGYLGVGEFAEALHVLSTLM 445

Query: 237 SKKD-VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 295
            K   +      N  L+ L  +      +  L  M  +   PD +T   +I GFC  G +
Sbjct: 446 PKHQCLPNVVTYNCVLKGLLSLGLLDRAMEALEEMKSSNVIPDSVTHTVMIKGFCDAGEL 505

Query: 296 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN 355
           E+A K   D V       D   ++ I  GL  +G++++A + LY+++   G +PG++ YN
Sbjct: 506 EKA-KSFWDNVIWPSGMHDDYVYSAIFRGLCKLGKLEQACDFLYELV-DSGVAPGVLCYN 563

Query: 356 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIV 392
            ++    +    +   ++   M   G+  D+ T+ I+
Sbjct: 564 ILVDAACKQGLKKLVYQLVKEMRRNGISPDAVTWRII 600



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 88/429 (20%), Positives = 157/429 (36%), Gaps = 66/429 (15%)

Query: 130 MPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG- 188
           M    +  E    G ++D LC +GR   A   V ++     + ++ S +  + G    G 
Sbjct: 1   MAAAAAQGERPDLGSLVDELCATGRAAEAHHRVSLLFLSSSSAAVPSRH--LDGRAADGL 58

Query: 189 --------GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGES----------------- 223
                     +   +LL+       +PS   Y  L+  LCG S                 
Sbjct: 59  LRRLLRARKPLLTLRLLQAAPPAALVPSLPNYNRLLALLCGSSAPLLLVLLAHRLLLRMR 118

Query: 224 -------------------DLEKARKVLQFM----LSKKDVDRTRICNIYLR------AL 254
                              D    RK+L  M    ++   + RT +    LR      A+
Sbjct: 119 AAPDAATYAALLDGYARIPDPRAVRKLLDEMPRRGVAPSSLARTYLVKALLRSRDVDGAM 178

Query: 255 CLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPD 314
            L+ N   L + +        +        ++   C  G      ++  +M   +    D
Sbjct: 179 ALVDN--HLWSSMERSNGEDQELKNAAFANLVQCLCIEGFFHIVFRIAEEMPQQRCGVAD 236

Query: 315 AVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVF 374
              ++ +I  L   G+   A  ++Y +M +RG  P  V+YN ++ GL   ++       +
Sbjct: 237 VFAYSQMIDSLCRSGQHHGASRIVY-IMGKRGMYPSTVSYNCIVHGLCTSQKPGGRLRAY 295

Query: 375 N-CMLGIGVV--ADSTTYAIVIDGLCESNQLDEAKRFWDDI--VWPSNIHDNYVYAAMIK 429
              M G+         TY +++D LC  N+L +AK   + +  V P +     +Y   + 
Sbjct: 296 QLVMEGVRFRYHPREVTYKVLVDELCRENELAKAKDVMELMLKVTPDDDTRTRIYNMFLA 355

Query: 430 GLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL-N 488
            L       E +  L  ++  G  P+++  N VI G CK+   +EA +I+ +M       
Sbjct: 356 ALRVVDNPSEQLDVLVSMLQEGCKPDVITMNTVIHGFCKVGRAQEARRIVDDMLNGKFCA 415

Query: 489 PDAVTWRIL 497
           PD VT+  L
Sbjct: 416 PDVVTFTTL 424


>gi|115474031|ref|NP_001060614.1| Os07g0674300 [Oryza sativa Japonica Group]
 gi|34393854|dbj|BAC83534.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|34395085|dbj|BAC84771.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113612150|dbj|BAF22528.1| Os07g0674300 [Oryza sativa Japonica Group]
 gi|125601488|gb|EAZ41064.1| hypothetical protein OsJ_25552 [Oryza sativa Japonica Group]
          Length = 737

 Score =  507 bits (1305), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 253/476 (53%), Positives = 345/476 (72%), Gaps = 9/476 (1%)

Query: 35  LIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFK-LWER 93
           L+ GY R  +     K+ DEM   GV P+SL  S LV+ +LR+RDV+ A  L+   LW  
Sbjct: 129 LLDGYARIPDPRAVRKLLDEMPRRGVAPSSLARSYLVKALLRSRDVDGAMALVDNHLWSS 188

Query: 94  MKEE--EDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGK-SVNEEFACGHMIDSLC 150
           M+    ED  + NAAFANLV  LC EG+ + VFRIAE+MPQ +  V + FA   MIDSLC
Sbjct: 189 MERSNGEDQELKNAAFANLVQCLCIEGFFHIVFRIAEEMPQQRCGVADVFAYSQMIDSLC 248

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLC---KHGGCMRAYQLLEEGIQFGYLP 207
           RSG++HGASR+VY+M KRG+ PS VSYN IVHGLC   K GG +RAYQL+ EG++F Y P
Sbjct: 249 RSGQHHGASRIVYIMGKRGMYPSTVSYNCIVHGLCTSQKPGGRLRAYQLVMEGVRFRYHP 308

Query: 208 SEHTYKVLVEGLCGESDLEKARKVLQFML--SKKDVDRTRICNIYLRALCLIKNPTELLN 265
            E TYKVLV+ LC E++L KA+ V++ ML  +  D  RTRI N++L AL ++ NP+E L+
Sbjct: 309 REVTYKVLVDELCLENELAKAKDVMELMLKVTPDDDTRTRIYNMFLAALRVVDNPSEQLD 368

Query: 266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 325
           VLV MLQ  C+PDVIT+NTVI+GFCK+GR +EA ++++DM+ GKFCAPD VTFTT+I G 
Sbjct: 369 VLVSMLQEGCKPDVITMNTVIHGFCKVGRAQEARRIVDDMLNGKFCAPDVVTFTTLISGY 428

Query: 326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 385
           L VG   EAL++L  +MP+    P +VTYN VL+GL  L  ++ A E    M    V+ D
Sbjct: 429 LGVGEFAEALHVLSTLMPKHQCLPNVVTYNCVLKGLLSLGLLDRAMEALEEMKSSNVIPD 488

Query: 386 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY 445
           S T+ ++I G C++ +L++AK FWD+++WPS +HD+YVY+A+ +GLC+ GK+ +A  FLY
Sbjct: 489 SVTHTVMIKGFCDAGELEKAKSFWDNVIWPSGMHDDYVYSAIFRGLCKLGKLEQACDFLY 548

Query: 446 ELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLH 501
           ELVDSGV P ++CYN+++D ACK  +K+  YQ+++EMR+NG++PDAVTWRI+D+LH
Sbjct: 549 ELVDSGVAPGVLCYNILVDAACKQGLKKLVYQLVKEMRRNGISPDAVTWRIIDRLH 604



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 87/397 (21%), Positives = 168/397 (42%), Gaps = 45/397 (11%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYC---RTGEMDVAYKVFDEMRH 57
           +D LC   +   A ++ + M  RG  P+ VSY  ++HG C   + G    AY++  E   
Sbjct: 244 IDSLCRSGQHHGASRIVYIMGKRGMYPSTVSYNCIVHGLCTSQKPGGRLRAYQLVMEGVR 303

Query: 58  CGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCRE 117
               P  +TY VLV  +    ++ +A  +M +L  ++  ++D                  
Sbjct: 304 FRYHPREVTYKVLVDELCLENELAKAKDVM-ELMLKVTPDDDT----------------- 345

Query: 118 GYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
                         + +  N   A   ++D+            V+  M + G  P +++ 
Sbjct: 346 --------------RTRIYNMFLAALRVVDNPSEQ------LDVLVSMLQEGCKPDVITM 385

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGY-LPSEHTYKVLVEGLCGESDLEKARKVLQFML 236
           N+++HG CK G    A +++++ +   +  P   T+  L+ G  G  +  +A  VL  ++
Sbjct: 386 NTVIHGFCKVGRAQEARRIVDDMLNGKFCAPDVVTFTTLISGYLGVGEFAEALHVLSTLM 445

Query: 237 SKKD-VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 295
            K   +      N  L+ L  +      +  L  M  +   PD +T   +I GFC  G +
Sbjct: 446 PKHQCLPNVVTYNCVLKGLLSLGLLDRAMEALEEMKSSNVIPDSVTHTVMIKGFCDAGEL 505

Query: 296 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN 355
           E+A K   D V       D   ++ I  GL  +G++++A + LY+++   G +PG++ YN
Sbjct: 506 EKA-KSFWDNVIWPSGMHDDYVYSAIFRGLCKLGKLEQACDFLYELV-DSGVAPGVLCYN 563

Query: 356 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIV 392
            ++    +    +   ++   M   G+  D+ T+ I+
Sbjct: 564 ILVDAACKQGLKKLVYQLVKEMRRNGISPDAVTWRII 600



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 87/429 (20%), Positives = 157/429 (36%), Gaps = 66/429 (15%)

Query: 130 MPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG- 188
           M    +  E    G ++D LC +GR   A   V ++     + ++ S +  + G    G 
Sbjct: 1   MAAAAAQGERPDLGSLVDELCATGRAAEAHHRVSLLFLSSSSAAVPSRH--LDGRAADGL 58

Query: 189 --------GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGES----------------- 223
                     +   +LL+       +PS   Y  L+  LCG S                 
Sbjct: 59  LRRLLRARKPLLTLRLLQAAPPAALVPSLPNYNRLLALLCGSSAPLLLVLLAHRLLLRMR 118

Query: 224 -------------------DLEKARKVLQFM----LSKKDVDRTRICNIYLR------AL 254
                              D    RK+L  M    ++   + R+ +    LR      A+
Sbjct: 119 AAPDAATYAALLDGYARIPDPRAVRKLLDEMPRRGVAPSSLARSYLVKALLRSRDVDGAM 178

Query: 255 CLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPD 314
            L+ N   L + +        +        ++   C  G      ++  +M   +    D
Sbjct: 179 ALVDN--HLWSSMERSNGEDQELKNAAFANLVQCLCIEGFFHIVFRIAEEMPQQRCGVAD 236

Query: 315 AVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVF 374
              ++ +I  L   G+   A  ++Y +M +RG  P  V+YN ++ GL   ++       +
Sbjct: 237 VFAYSQMIDSLCRSGQHHGASRIVY-IMGKRGMYPSTVSYNCIVHGLCTSQKPGGRLRAY 295

Query: 375 N-CMLGIGVV--ADSTTYAIVIDGLCESNQLDEAKRFWDDI--VWPSNIHDNYVYAAMIK 429
              M G+         TY +++D LC  N+L +AK   + +  V P +     +Y   + 
Sbjct: 296 QLVMEGVRFRYHPREVTYKVLVDELCLENELAKAKDVMELMLKVTPDDDTRTRIYNMFLA 355

Query: 430 GLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL-N 488
            L       E +  L  ++  G  P+++  N VI G CK+   +EA +I+ +M       
Sbjct: 356 ALRVVDNPSEQLDVLVSMLQEGCKPDVITMNTVIHGFCKVGRAQEARRIVDDMLNGKFCA 415

Query: 489 PDAVTWRIL 497
           PD VT+  L
Sbjct: 416 PDVVTFTTL 424


>gi|302806733|ref|XP_002985098.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
 gi|300147308|gb|EFJ13973.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
          Length = 659

 Score =  276 bits (707), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 152/503 (30%), Positives = 270/503 (53%), Gaps = 13/503 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC + ++  A  +   M  R  VP+V++YT+LI G C+T  +D A K+ ++M+  G+ P+
Sbjct: 137 LCKMGKIDAARNVLKMMLERSCVPDVITYTSLIVGCCQTNALDEARKLMEKMKESGLTPD 196

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           ++ Y+ L+ G+ +   +E  + L+ ++ E  +E +  S N      +V  LC  G   E 
Sbjct: 197 TVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNT-----VVACLCESGKYEEA 251

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            +I E M + K   +      ++D  C+  +   A R++  M  R   P++++Y +++ G
Sbjct: 252 GKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVITYTTLIGG 311

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
             +      AY+++E+  + G  P   TY  L++GLC    LE+A ++L+ M+ K     
Sbjct: 312 FSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPD 371

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               +I +  LC +    +   +L  ML+  CQP+++T NT+I+GFCK G+++E  KVL 
Sbjct: 372 VVTYSILVNGLCKLGKVDDARLLLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVL- 430

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           +++    C PD VT++T+I G     R+Q+A  +L       G SP   +Y+++L GL  
Sbjct: 431 ELMKEVSCTPDVVTYSTLIDGYCKANRMQDAFAIL-------GISPDKASYSSMLEGLCS 483

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
             +VEEA+EV + M   G    S+ YA++I GLC+  + DEA +    +       + Y 
Sbjct: 484 TGKVEEAQEVMDLMTKQGCPPTSSHYALIIGGLCDVERGDEALKMLQVMSERGCEPNLYT 543

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y+ +I GLC++ ++ +A++ L  +++ G  P++  Y  +IDG CK++    AYQ  + MR
Sbjct: 544 YSILINGLCKTKRVEDAINVLDVMLEKGCVPDVATYTSLIDGFCKINKMDAAYQCFKTMR 603

Query: 484 KNGLNPDAVTWRILDKLHGNRGN 506
            +G  PD + + IL       GN
Sbjct: 604 DSGCEPDKLAYNILISGFCQSGN 626



 Score =  235 bits (599), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 141/493 (28%), Positives = 257/493 (52%), Gaps = 55/493 (11%)

Query: 6   GLSRVGEAH---KLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           G SR G +    ++  +M +R   P+V+++ T++  YC+ G++D A   F     C   P
Sbjct: 33  GFSRAGNSKMVLEIANEMLARRFSPDVITHNTILKAYCQIGDLDRALSHFRGKMWCS--P 90

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
            + TY +L+ G+ + + ++ A  L+ ++ ++     D   + A +  L+  LC+ G ++ 
Sbjct: 91  TAFTYCILIHGLCQCQRIDEAYQLLDEMIQK-----DCHPDAAVYNCLIAGLCKMGKIDA 145

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
              + + M +   V +      +I   C++     A +++  M++ GLTP  V+YN++++
Sbjct: 146 ARNVLKMMLERSCVPDVITYTSLIVGCCQTNALDEARKLMEKMKESGLTPDTVAYNALLN 205

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           GLCK        +LLEE ++ G  P   +Y  +V  LC     E+A K+L+ M+ KK   
Sbjct: 206 GLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVACLCESGKYEEAGKILEKMIEKK--- 262

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
                                           C PDV+T N++++GFCK+ +++EA ++L
Sbjct: 263 --------------------------------CGPDVVTYNSLMDGFCKVSKMDEAERLL 290

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
            DMV G+ CAP  +T+TT+I G     R+ +A  ++ + M + G SP +VTYN +L GL 
Sbjct: 291 EDMV-GRRCAPTVITYTTLIGGFSRADRLADAYRVM-EDMFKAGISPDLVTYNCLLDGLC 348

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
           +  ++EEA E+   M+      D  TY+I+++GLC+  ++D+A R   +++       N 
Sbjct: 349 KAGKLEEAHELLEVMVEKDCAPDVVTYSILVNGLCKLGKVDDA-RLLLEMMLERGCQPNL 407

Query: 423 V-YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
           V +  MI G C++GK+ E    L  + +   TP++V Y+ +IDG CK +  ++A+ IL  
Sbjct: 408 VTFNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDVVTYSTLIDGYCKANRMQDAFAIL-- 465

Query: 482 MRKNGLNPDAVTW 494
               G++PD  ++
Sbjct: 466 ----GISPDKASY 474



 Score =  215 bits (548), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 135/496 (27%), Positives = 241/496 (48%), Gaps = 52/496 (10%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEM--RHC 58
           ++ LC  +++ E  KL  +M   G  P+  SY T++   C +G+ + A K+ ++M  + C
Sbjct: 204 LNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVACLCESGKYEEAGKILEKMIEKKC 263

Query: 59  GVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREG 118
           G  P+ +TY+ L+                                        D  C+  
Sbjct: 264 G--PDVVTYNSLM----------------------------------------DGFCKVS 281

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
            ++E  R+ EDM   +          +I    R+ R   A RV+  M K G++P LV+YN
Sbjct: 282 KMDEAERLLEDMVGRRCAPTVITYTTLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYN 341

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
            ++ GLCK G    A++LLE  ++    P   TY +LV GLC    ++ AR +L+ ML +
Sbjct: 342 CLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVNGLCKLGKVDDARLLLEMMLER 401

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
                    N  +   C      E   VL  M +  C PDV+T +T+I+G+CK  R+++A
Sbjct: 402 GCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDVVTYSTLIDGYCKANRMQDA 461

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
             +L         +PD  ++++++ GL + G+++EA  ++  +M ++G  P    Y  ++
Sbjct: 462 FAILG-------ISPDKASYSSMLEGLCSTGKVEEAQEVM-DLMTKQGCPPTSSHYALII 513

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
            GL  + R +EA ++   M   G   +  TY+I+I+GLC++ ++++A    D ++    +
Sbjct: 514 GGLCDVERGDEALKMLQVMSERGCEPNLYTYSILINGLCKTKRVEDAINVLDVMLEKGCV 573

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI 478
            D   Y ++I G C+  K+  A      + DSG  P+ + YN++I G C+     +A ++
Sbjct: 574 PDVATYTSLIDGFCKINKMDAAYQCFKTMRDSGCEPDKLAYNILISGFCQSGNVEKAIEV 633

Query: 479 LREMRKNGLNPDAVTW 494
           ++ M + G NPDA T+
Sbjct: 634 MQLMLEKGCNPDAATY 649



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 110/396 (27%), Positives = 199/396 (50%), Gaps = 48/396 (12%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           MD  C +S++ EA +L  DM  R   P V++YTTLI G+ R   +  AY+V ++M   G+
Sbjct: 274 MDGFCKVSKMDEAERLLEDMVGRRCAPTVITYTTLIGGFSRADRLADAYRVMEDMFKAGI 333

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TY+ L+ G+ +   +E A+ L+  + E+     D + +   ++ LV+ LC+ G V
Sbjct: 334 SPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEK-----DCAPDVVTYSILVNGLCKLGKV 388

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           ++   + E M +            MID  C++G+     +V+ +M++   TP +V+Y+++
Sbjct: 389 DDARLLLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDVVTYSTL 448

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK- 239
           + G CK      A+ +L      G  P + +Y  ++EGLC    +E+A++V+  M  +  
Sbjct: 449 IDGYCKANRMQDAFAIL------GISPDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQGC 502

Query: 240 ---------------DVDR------------TRIC-------NIYLRALCLIKNPTELLN 265
                          DV+R             R C       +I +  LC  K   + +N
Sbjct: 503 PPTSSHYALIIGGLCDVERGDEALKMLQVMSERGCEPNLYTYSILINGLCKTKRVEDAIN 562

Query: 266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 325
           VL  ML+  C PDV T  ++I+GFCK+ +++ A +    M     C PD + +  +I G 
Sbjct: 563 VLDVMLEKGCVPDVATYTSLIDGFCKINKMDAAYQCFKTM-RDSGCEPDKLAYNILISGF 621

Query: 326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
              G +++A+ ++ Q+M ++G +P   TY +++R L
Sbjct: 622 CQSGNVEKAIEVM-QLMLEKGCNPDAATYFSLMRSL 656



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 88/307 (28%), Positives = 157/307 (51%), Gaps = 4/307 (1%)

Query: 191 MRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIY 250
           +  Y    E       PS  TY  L+ G     + +   ++   ML+++        N  
Sbjct: 6   LEGYSFFRERFSDPSKPSNSTYGALITGFSRAGNSKMVLEIANEMLARRFSPDVITHNTI 65

Query: 251 LRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKF 310
           L+A C I +    L+   F  +  C P   T   +I+G C+  RI+EA ++L++M+  K 
Sbjct: 66  LKAYCQIGDLDRALS--HFRGKMWCSPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQ-KD 122

Query: 311 CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEA 370
           C PDA  +  +I GL  +G+I  A N+L ++M +R   P ++TY +++ G  +   ++EA
Sbjct: 123 CHPDAAVYNCLIAGLCKMGKIDAARNVL-KMMLERSCVPDVITYTSLIVGCCQTNALDEA 181

Query: 371 KEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKG 430
           +++   M   G+  D+  Y  +++GLC+ NQL+E  +  +++V      D + Y  ++  
Sbjct: 182 RKLMEKMKESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVAC 241

Query: 431 LCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD 490
           LC SGK  EA   L ++++    P++V YN ++DG CK+S   EA ++L +M      P 
Sbjct: 242 LCESGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPT 301

Query: 491 AVTWRIL 497
            +T+  L
Sbjct: 302 VITYTTL 308



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 106/253 (41%), Gaps = 38/253 (15%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C   +V E HK+   MK     P+VV+Y+TLI GYC+   M  A+ +       G+
Sbjct: 414 IDGFCKAGKVDEGHKVLELMKEVSCTPDVVTYSTLIDGYCKANRMQDAFAIL------GI 467

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLM-------------------------------FK 89
            P+  +YS ++ G+  T  VE A  +M                                K
Sbjct: 468 SPDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQGCPPTSSHYALIIGGLCDVERGDEALK 527

Query: 90  LWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSL 149
           + + M E      N   ++ L++ LC+   V +   + + M +   V +      +ID  
Sbjct: 528 MLQVMSER-GCEPNLYTYSILINGLCKTKRVEDAINVLDVMLEKGCVPDVATYTSLIDGF 586

Query: 150 CRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSE 209
           C+  +   A +    MR  G  P  ++YN ++ G C+ G   +A ++++  ++ G  P  
Sbjct: 587 CKINKMDAAYQCFKTMRDSGCEPDKLAYNILISGFCQSGNVEKAIEVMQLMLEKGCNPDA 646

Query: 210 HTYKVLVEGLCGE 222
            TY  L+  L  E
Sbjct: 647 ATYFSLMRSLTTE 659


>gi|302791141|ref|XP_002977337.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
 gi|300154707|gb|EFJ21341.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
          Length = 636

 Score =  270 bits (691), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 150/497 (30%), Positives = 268/497 (53%), Gaps = 7/497 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC  +R+ EA   F  MK +G VPN  +Y  LI+G+C+  ++  AY +  EM+  G+
Sbjct: 14  IDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGL 73

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +TYS ++ G  R   V+ A    +KL+ +M E   +  N   +  L+  LCR G +
Sbjct: 74  APNVVTYSTVIHGFCRQTKVDTA----YKLFRQMVENGCMP-NLVTYNTLLSGLCRNGLM 128

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E + + ++M +     ++F+   ++  LC++G+   A +V          P +V+Y+++
Sbjct: 129 DEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTL 188

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GLCK G    A +L E+  +    P   T+  L++GLC    L++A++VL+ M  +  
Sbjct: 189 IAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNC 248

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                  +  +  LC      +   V   M+    +P+V+T N++I+GFC    ++ AL 
Sbjct: 249 TPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALL 308

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           ++ +M A   C PD +T+ T+I GL   GR  EA N L+  M  +  +P ++TY+ ++ G
Sbjct: 309 LMEEMTATG-CLPDIITYNTLIDGLCKTGRAPEA-NRLFGDMKAKFCNPDVITYSCLIGG 366

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
             +L R++ A+ +F+ ML   V+ D  T++ +++G C +  +D+A+R  +++V      D
Sbjct: 367 FCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPD 426

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
            Y Y +++ G C+ G++ EA   L  +   G  PN+V Y  +ID  C+      AY++L 
Sbjct: 427 VYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYKLLE 486

Query: 481 EMRKNGLNPDAVTWRIL 497
           EM  NG+ P+ +T+R L
Sbjct: 487 EMVGNGVQPNVITYRSL 503



 Score =  257 bits (656), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 152/500 (30%), Positives = 254/500 (50%), Gaps = 12/500 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C + +V  A+ L  +MK  G  PNVV+Y+T+IHG+CR  ++D AYK+F +M   G 
Sbjct: 49  INGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGC 108

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKE--EEDLSVNNAAFANLVDSLCREG 118
           +PN +TY+ L+ G+ R       N LM + +E + E  E  L  +  ++  L+  LC+ G
Sbjct: 109 MPNLVTYNTLLSGLCR-------NGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTG 161

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
            ++   ++ ED   G    +  A   +I  LC++GR   A ++   MR+    P +V++ 
Sbjct: 162 KIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFT 221

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
           +++ GLCK      A Q+LE        P+  TY  L++GLC    +  A++V + M+ +
Sbjct: 222 ALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVR 281

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
                    N  +   C+       L ++  M  T C PD+IT NT+I+G CK GR  EA
Sbjct: 282 GIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEA 341

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
            ++  DM A KFC PD +T++ +I G   + RI  A   L+  M ++   P +VT++ ++
Sbjct: 342 NRLFGDMKA-KFCNPDVITYSCLIGGFCKLERIDMA-RTLFDDMLKQAVLPDVVTFSTLV 399

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
            G      V++A+ +   M+      D  TY  ++DG C+  ++ EA+R    +      
Sbjct: 400 EGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQ 459

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI 478
            +   Y A+I   CR+GK   A   L E+V +GV PN++ Y  +I G C      EA ++
Sbjct: 460 PNVVTYTALIDAFCRAGKPTVAYKLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKM 519

Query: 479 LREM-RKNGLNPDAVTWRIL 497
           L  + R      D   +R++
Sbjct: 520 LERLERDENCKADMFAYRVM 539



 Score =  249 bits (636), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 158/523 (30%), Positives = 259/523 (49%), Gaps = 38/523 (7%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C  ++V  A+KLF  M   G +PN+V+Y TL+ G CR G MD AY++ DEMR  G+ P+
Sbjct: 87  FCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPD 146

Query: 64  SLTYSVLVRGVLRTRDVERA--------------NVLMF-----------------KLWE 92
             +Y  L+ G+ +T  ++ A              +V+ +                 KL+E
Sbjct: 147 KFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKTGRLDEACKLFE 206

Query: 93  RMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRS 152
           +M+E      +   F  L+D LC+   + E  ++ E M              +ID LC++
Sbjct: 207 KMRENS-CEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKT 265

Query: 153 GRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTY 212
           G+   A  V   M  RG+ P++V+YNS++HG C   G   A  L+EE    G LP   TY
Sbjct: 266 GQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITY 325

Query: 213 KVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQ 272
             L++GLC      +A ++   M +K         +  +   C ++       +   ML+
Sbjct: 326 NTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLK 385

Query: 273 TQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQ 332
               PDV+T +T++ G+C  G +++A ++L +MVA   C+PD  T+T+++ G   VGR+ 
Sbjct: 386 QAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASD-CSPDVYTYTSLVDGFCKVGRMV 444

Query: 333 EALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIV 392
           EA  +L + M +RG  P +VTY A++    R  +   A ++   M+G GV  +  TY  +
Sbjct: 445 EARRVLKR-MAKRGCQPNVVTYTALIDAFCRAGKPTVAYKLLEEMVGNGVQPNVITYRSL 503

Query: 393 IDGLCESNQLDEAKRFWDDIVWPSNIH-DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 451
           I G C +  L+EA++  + +    N   D + Y  M+ GLCR+G++  A+  L  +  SG
Sbjct: 504 IGGFCGTGDLEEARKMLERLERDENCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSG 563

Query: 452 VTPNIVCYNVVIDGACKLSMKREAYQILREM---RKNGLNPDA 491
             P    Y  +I G C+     +A ++L EM   RK+  N +A
Sbjct: 564 TPPRHDIYVALIRGLCQGKELGKAMEVLEEMTLSRKSRPNAEA 606



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 115/396 (29%), Positives = 202/396 (51%), Gaps = 2/396 (0%)

Query: 110 LVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRG 169
           ++D LC+   + E       M +  +V  E+    +I+  C+  + H A  ++  M++ G
Sbjct: 13  MIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESG 72

Query: 170 LTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKAR 229
           L P++V+Y++++HG C+      AY+L  + ++ G +P+  TY  L+ GLC    +++A 
Sbjct: 73  LAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAY 132

Query: 230 KVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGF 289
           ++L  M  +         +  +  LC        L V        C PDV+  +T+I G 
Sbjct: 133 ELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGL 192

Query: 290 CKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSP 349
           CK GR++EA K+   M     C PD VTFT ++ GL    R+QEA  +L + M  R  +P
Sbjct: 193 CKTGRLDEACKLFEKMRENS-CEPDVVTFTALMDGLCKGDRLQEAQQVL-ETMEDRNCTP 250

Query: 350 GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFW 409
            ++TY++++ GL +  +V +A+EVF  M+  G+  +  TY  +I G C +N +D A    
Sbjct: 251 NVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLM 310

Query: 410 DDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKL 469
           +++     + D   Y  +I GLC++G+  EA     ++      P+++ Y+ +I G CKL
Sbjct: 311 EEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKL 370

Query: 470 SMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
                A  +  +M K  + PD VT+  L + + N G
Sbjct: 371 ERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAG 406



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 130/417 (31%), Positives = 206/417 (49%), Gaps = 13/417 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           MD LC   R+ EA ++   M+ R   PNV++Y++LI G C+TG++  A +VF  M   G+
Sbjct: 224 MDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGI 283

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +TY+ L+ G   T  V+ A +LM    E M     L  +   +  L+D LC+ G  
Sbjct: 284 EPNVVTYNSLIHGFCMTNGVDSALLLM----EEMTATGCLP-DIITYNTLIDGLCKTGRA 338

Query: 121 NEVFRIAEDMPQGKSVNEE---FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
            E  R+  DM + K  N +   ++C  +I   C+  R   A  +   M K+ + P +V++
Sbjct: 339 PEANRLFGDM-KAKFCNPDVITYSC--LIGGFCKLERIDMARTLFDDMLKQAVLPDVVTF 395

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
           +++V G C  G    A +LLEE +     P  +TY  LV+G C    + +AR+VL+ M  
Sbjct: 396 STLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAK 455

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
           +            + A C    PT    +L  M+    QP+VIT  ++I GFC  G +EE
Sbjct: 456 RGCQPNVVTYTALIDAFCRAGKPTVAYKLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEE 515

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           A K+L  +   + C  D   +  ++ GL   GR+  AL LL + + Q G  P    Y A+
Sbjct: 516 ARKMLERLERDENCKADMFAYRVMMDGLCRTGRMSAALELL-EAIKQSGTPPRHDIYVAL 574

Query: 358 LRGLFRLRRVEEAKEVFNCM-LGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413
           +RGL + + + +A EV   M L      ++  Y  VI  L    + +EA    D+++
Sbjct: 575 IRGLCQGKELGKAMEVLEEMTLSRKSRPNAEAYEAVIQELAREGRHEEANALADELL 631



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 113/409 (27%), Positives = 186/409 (45%), Gaps = 65/409 (15%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   +V +A ++F  M  RG  PNVV+Y +LIHG+C T  +D A  + +EM   G 
Sbjct: 259 IDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGC 318

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLM---------------------FKLWERMKEEED 99
           LP+ +TY+ L+ G+ +T     AN L                      F   ER+     
Sbjct: 319 LPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMART 378

Query: 100 LS---------VNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC 150
           L           +   F+ LV+  C  G V++  R+ E+M       + +    ++D  C
Sbjct: 379 LFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFC 438

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
           + GR   A RV+  M KRG  P++V+Y +++   C+ G    AY+LLEE +  G  P+  
Sbjct: 439 KVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYKLLEEMVGNGVQPNVI 498

Query: 211 TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM 270
           TY+ L+ G CG  DLE+ARK+L+ +   ++                              
Sbjct: 499 TYRSLIGGFCGTGDLEEARKMLERLERDEN------------------------------ 528

Query: 271 LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR 330
               C+ D+     +++G C+ GR+  AL++L + +      P    +  +I GL     
Sbjct: 529 ----CKADMFAYRVMMDGLCRTGRMSAALELL-EAIKQSGTPPRHDIYVALIRGLCQGKE 583

Query: 331 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
           + +A+ +L ++   R   P    Y AV++ L R  R EEA  + + +LG
Sbjct: 584 LGKAMEVLEEMTLSRKSRPNAEAYEAVIQELAREGRHEEANALADELLG 632



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 87/292 (29%), Positives = 153/292 (52%), Gaps = 4/292 (1%)

Query: 211 TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM 270
           T+ ++++GLC  + L +A      M  K  V      N+ +   C +        +L  M
Sbjct: 9   TWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEM 68

Query: 271 LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR 330
            ++   P+V+T +TVI+GFC+  +++ A K+   MV    C P+ VT+ T++ GL   G 
Sbjct: 69  KESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENG-CMPNLVTYNTLLSGLCRNGL 127

Query: 331 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYA 390
           + EA  LL + M +RG  P   +Y+ ++ GL +  +++ A +VF          D   Y+
Sbjct: 128 MDEAYELLDE-MRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYS 186

Query: 391 IVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 450
            +I GLC++ +LDEA + ++ +   S   D   + A++ GLC+  ++ EA   L  + D 
Sbjct: 187 TLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDR 246

Query: 451 GVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
             TPN++ Y+ +IDG CK    R+A ++ + M   G+ P+ VT+  L  +HG
Sbjct: 247 NCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSL--IHG 296



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 117/224 (52%), Gaps = 2/224 (0%)

Query: 274 QCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQE 333
           +C+ +VIT   +I+G CK  R+ EA      M   K   P+  T+  +I G   V ++  
Sbjct: 2   ECEKNVITWTIMIDGLCKANRLPEATTYFAKM-KKKGTVPNEWTYNVLINGFCKVHKVHR 60

Query: 334 ALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVI 393
           A  LL + M + G +P +VTY+ V+ G  R  +V+ A ++F  M+  G + +  TY  ++
Sbjct: 61  AY-LLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLL 119

Query: 394 DGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVT 453
            GLC +  +DEA    D++       D + Y  ++ GLC++GKI  A+    +  +    
Sbjct: 120 SGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCP 179

Query: 454 PNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           P++V Y+ +I G CK     EA ++  +MR+N   PD VT+  L
Sbjct: 180 PDVVAYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTAL 223


>gi|302780401|ref|XP_002971975.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
 gi|300160274|gb|EFJ26892.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
          Length = 755

 Score =  270 bits (689), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 150/497 (30%), Positives = 268/497 (53%), Gaps = 7/497 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC  +R+ EA   F  MK +G VPN  +Y  LI+G+C+  ++  AY +  EM+  G+
Sbjct: 133 IDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGL 192

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +TYS ++ G  R   V+ A    +KL+ +M E   +  N   +  L+  LCR G +
Sbjct: 193 APNVVTYSTVIHGFCRQTKVDTA----YKLFRQMVENGCMP-NLVTYNTLLSGLCRNGLM 247

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E + + ++M +     ++F+   ++  LC++G+   A +V          P +V+Y+++
Sbjct: 248 DEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTL 307

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GLCK G    A +L E+  +    P   T+  L++GLC    L++A++VL+ M  +  
Sbjct: 308 IAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNC 367

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                  +  +  LC      +   V   M+    +P+V+T N++I+GFC    ++ AL 
Sbjct: 368 TPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALL 427

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           ++ +M A   C PD +T+ T+I GL   GR  EA N L+  M  +  +P ++TY+ ++ G
Sbjct: 428 LMEEMTATG-CLPDIITYNTLIDGLCKTGRAPEA-NRLFGDMKAKFCNPDVITYSCLIGG 485

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
             +L R++ A+ +F+ ML   V+ D  T++ +++G C +  +D+A+R  +++V      D
Sbjct: 486 FCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPD 545

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
            Y Y +++ G C+ G++ EA   L  +   G  PN+V Y  +ID  C+      AY++L 
Sbjct: 546 VYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYRLLE 605

Query: 481 EMRKNGLNPDAVTWRIL 497
           EM  NG+ P+ +T+R L
Sbjct: 606 EMVGNGVQPNVITYRSL 622



 Score =  258 bits (658), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 153/500 (30%), Positives = 254/500 (50%), Gaps = 12/500 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C + +V  A+ L  +MK  G  PNVV+Y+T+IHG+CR  ++D AYK+F +M   G 
Sbjct: 168 INGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGC 227

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKE--EEDLSVNNAAFANLVDSLCREG 118
           +PN +TY+ L+ G+ R       N LM + +E + E  E  L  +  ++  L+  LC+ G
Sbjct: 228 MPNLVTYNTLLSGLCR-------NGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTG 280

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
            ++   ++ ED   G    +  A   +I  LC++GR   A ++   MR+    P +V++ 
Sbjct: 281 KIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFT 340

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
           +++ GLCK      A Q+LE        P+  TY  L++GLC    +  A++V + M+ +
Sbjct: 341 ALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVR 400

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
                    N  +   C+       L ++  M  T C PD+IT NT+I+G CK GR  EA
Sbjct: 401 GIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEA 460

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
            ++  DM A KFC PD +T++ +I G   + RI  A   L+  M ++   P +VT++ ++
Sbjct: 461 NRLFGDMKA-KFCNPDVITYSCLIGGFCKLERIDMA-RTLFDDMLKQAVLPDVVTFSTLV 518

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
            G      V++A+ +   M+      D  TY  ++DG C+  ++ EA+R    +      
Sbjct: 519 EGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQ 578

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI 478
            +   Y A+I   CR+GK   A   L E+V +GV PN++ Y  +I G C      EA +I
Sbjct: 579 PNVVTYTALIDAFCRAGKPTVAYRLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKI 638

Query: 479 LREM-RKNGLNPDAVTWRIL 497
           L  + R      D   +R++
Sbjct: 639 LERLERDENCKADMFAYRVM 658



 Score =  248 bits (633), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 158/523 (30%), Positives = 258/523 (49%), Gaps = 38/523 (7%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C  ++V  A+KLF  M   G +PN+V+Y TL+ G CR G MD AY++ DEMR  G+ P+
Sbjct: 206 FCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPD 265

Query: 64  SLTYSVLVRGVLRTRDVERA--------------NVLMF-----------------KLWE 92
             +Y  L+ G+ +T  ++ A              +V+ +                 KL+E
Sbjct: 266 KFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFE 325

Query: 93  RMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRS 152
           +M+E      +   F  L+D LC+   + E  ++ E M              +ID LC++
Sbjct: 326 KMRENS-CEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKT 384

Query: 153 GRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTY 212
           G+   A  V   M  RG+ P++V+YNS++HG C   G   A  L+EE    G LP   TY
Sbjct: 385 GQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITY 444

Query: 213 KVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQ 272
             L++GLC      +A ++   M +K         +  +   C ++       +   ML+
Sbjct: 445 NTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLK 504

Query: 273 TQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQ 332
               PDV+T +T++ G+C  G +++A ++L +MVA   C+PD  T+T+++ G   VGR+ 
Sbjct: 505 QAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASD-CSPDVYTYTSLVDGFCKVGRMV 563

Query: 333 EALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIV 392
           EA  +L + M +RG  P +VTY A++    R  +   A  +   M+G GV  +  TY  +
Sbjct: 564 EARRVLKR-MAKRGCQPNVVTYTALIDAFCRAGKPTVAYRLLEEMVGNGVQPNVITYRSL 622

Query: 393 IDGLCESNQLDEAKRFWDDIVWPSNIH-DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 451
           I G C +  L+EA++  + +    N   D + Y  M+ GLCR+G++  A+  L  +  SG
Sbjct: 623 IGGFCGTGDLEEARKILERLERDENCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSG 682

Query: 452 VTPNIVCYNVVIDGACKLSMKREAYQILREM---RKNGLNPDA 491
             P    Y  +I G C+     +A ++L EM   RK+  N +A
Sbjct: 683 TPPRHDIYVALIRGLCQGKELGKAMEVLEEMTLSRKSRPNAEA 725



 Score =  239 bits (610), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 139/497 (27%), Positives = 252/497 (50%), Gaps = 10/497 (2%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           R+ E   +  +    G  PNV +Y  +I G C++G++D A ++ +EMR  G +P++  Y+
Sbjct: 39  RIDETCHILKNGWPPGITPNVFTYAVVIQGLCKSGDLDKACELLEEMRESGPVPDAAIYN 98

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
            ++  + + R+  +A       +  M+ E+    N   +  ++D LC+   + E      
Sbjct: 99  FVIHALCKARNTAKA----LDYFRSMECEK----NVITWTIMIDGLCKANRLPEATTYFA 150

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
            M +  +V  E+    +I+  C+  + H A  ++  M++ GL P++V+Y++++HG C+  
Sbjct: 151 KMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQT 210

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
               AY+L  + ++ G +P+  TY  L+ GLC    +++A ++L  M  +         +
Sbjct: 211 KVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYD 270

Query: 249 IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 308
             +  LC        L V        C PDV+  +T+I G CK GR++EA K+   M   
Sbjct: 271 TLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMREN 330

Query: 309 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE 368
             C PD VTFT ++ GL    R+QEA  +L + M  R  +P ++TY++++ GL +  +V 
Sbjct: 331 S-CEPDVVTFTALMDGLCKGDRLQEAQQVL-ETMEDRNCTPNVITYSSLIDGLCKTGQVR 388

Query: 369 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI 428
           +A+EVF  M+  G+  +  TY  +I G C +N +D A    +++     + D   Y  +I
Sbjct: 389 DAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLI 448

Query: 429 KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLN 488
            GLC++G+  EA     ++      P+++ Y+ +I G CKL     A  +  +M K  + 
Sbjct: 449 DGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVL 508

Query: 489 PDAVTWRILDKLHGNRG 505
           PD VT+  L + + N G
Sbjct: 509 PDVVTFSTLVEGYCNAG 525



 Score =  227 bits (578), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 145/479 (30%), Positives = 242/479 (50%), Gaps = 14/479 (2%)

Query: 21  KSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDV 80
           K +G   NV +Y  L     R   +D    +       G+ PN  TY+V+++G+ ++ D+
Sbjct: 16  KQQGFDHNVYTYNRLFEALLRARRIDETCHILKNGWPPGITPNVFTYAVVIQGLCKSGDL 75

Query: 81  ERANVLMFKLWERMKEEEDLSVNNAAFANLV-DSLCREGYVNEVFRIAEDMPQGKSVNEE 139
           ++A     +L E M+E     V +AA  N V  +LC+     +       M   K+V   
Sbjct: 76  DKA----CELLEEMRESG--PVPDAAIYNFVIHALCKARNTAKALDYFRSMECEKNV--- 126

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
                MID LC++ R   A+     M+K+G  P+  +YN +++G CK     RAY LL+E
Sbjct: 127 ITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKE 186

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
             + G  P+  TY  ++ G C ++ ++ A K+ + M+    +      N  L  LC    
Sbjct: 187 MKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGL 246

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
             E   +L  M +   QPD  + +T++ G CK G+I+ ALKV  D   G  C PD V ++
Sbjct: 247 MDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGD-CPPDVVAYS 305

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
           T+I GL   GR+ EA   L++ M +    P +VT+ A++ GL +  R++EA++V   M  
Sbjct: 306 TLIAGLCKAGRLDEACK-LFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMED 364

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV-YAAMIKGLCRSGKIH 438
                +  TY+ +IDGLC++ Q+ +A+  +  ++    I  N V Y ++I G C +  + 
Sbjct: 365 RNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIV-RGIEPNVVTYNSLIHGFCMTNGVD 423

Query: 439 EAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            A+  + E+  +G  P+I+ YN +IDG CK     EA ++  +M+    NPD +T+  L
Sbjct: 424 SALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCL 482



 Score =  181 bits (459), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 130/417 (31%), Positives = 206/417 (49%), Gaps = 13/417 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           MD LC   R+ EA ++   M+ R   PNV++Y++LI G C+TG++  A +VF  M   G+
Sbjct: 343 MDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGI 402

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +TY+ L+ G   T  V+ A +LM    E M     L  +   +  L+D LC+ G  
Sbjct: 403 EPNVVTYNSLIHGFCMTNGVDSALLLM----EEMTATGCLP-DIITYNTLIDGLCKTGRA 457

Query: 121 NEVFRIAEDMPQGKSVNEE---FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
            E  R+  DM + K  N +   ++C  +I   C+  R   A  +   M K+ + P +V++
Sbjct: 458 PEANRLFGDM-KAKFCNPDVITYSC--LIGGFCKLERIDMARTLFDDMLKQAVLPDVVTF 514

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
           +++V G C  G    A +LLEE +     P  +TY  LV+G C    + +AR+VL+ M  
Sbjct: 515 STLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAK 574

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
           +            + A C    PT    +L  M+    QP+VIT  ++I GFC  G +EE
Sbjct: 575 RGCQPNVVTYTALIDAFCRAGKPTVAYRLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEE 634

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           A K+L  +   + C  D   +  ++ GL   GR+  AL LL + + Q G  P    Y A+
Sbjct: 635 ARKILERLERDENCKADMFAYRVMMDGLCRTGRMSAALELL-EAIKQSGTPPRHDIYVAL 693

Query: 358 LRGLFRLRRVEEAKEVFNCM-LGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413
           +RGL + + + +A EV   M L      ++  Y  VI  L    + +EA    D+++
Sbjct: 694 IRGLCQGKELGKAMEVLEEMTLSRKSRPNAEAYEAVIQELAREGRHEEANALADELL 750



 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 99/335 (29%), Positives = 169/335 (50%), Gaps = 5/335 (1%)

Query: 163 YVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGE 222
           +  +++G   ++ +YN +   L +         +L+ G   G  P+  TY V+++GLC  
Sbjct: 13  WASKQQGFDHNVYTYNRLFEALLRARRIDETCHILKNGWPPGITPNVFTYAVVIQGLCKS 72

Query: 223 SDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITL 282
            DL+KA ++L+ M     V    I N  + ALC  +N  + L+    M   +C+ +VIT 
Sbjct: 73  GDLDKACELLEEMRESGPVPDAAIYNFVIHALCKARNTAKALDYFRSM---ECEKNVITW 129

Query: 283 NTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVM 342
             +I+G CK  R+ EA      M   K   P+  T+  +I G   V ++  A  LL + M
Sbjct: 130 TIMIDGLCKANRLPEATTYFAKM-KKKGTVPNEWTYNVLINGFCKVHKVHRAY-LLLKEM 187

Query: 343 PQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQL 402
            + G +P +VTY+ V+ G  R  +V+ A ++F  M+  G + +  TY  ++ GLC +  +
Sbjct: 188 KESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLM 247

Query: 403 DEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVV 462
           DEA    D++       D + Y  ++ GLC++GKI  A+    +  +    P++V Y+ +
Sbjct: 248 DEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTL 307

Query: 463 IDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           I G CK     EA ++  +MR+N   PD VT+  L
Sbjct: 308 IAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTAL 342



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 113/409 (27%), Positives = 186/409 (45%), Gaps = 65/409 (15%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   +V +A ++F  M  RG  PNVV+Y +LIHG+C T  +D A  + +EM   G 
Sbjct: 378 IDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGC 437

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLM---------------------FKLWERMKEEED 99
           LP+ +TY+ L+ G+ +T     AN L                      F   ER+     
Sbjct: 438 LPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMART 497

Query: 100 LS---------VNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC 150
           L           +   F+ LV+  C  G V++  R+ E+M       + +    ++D  C
Sbjct: 498 LFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFC 557

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
           + GR   A RV+  M KRG  P++V+Y +++   C+ G    AY+LLEE +  G  P+  
Sbjct: 558 KVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYRLLEEMVGNGVQPNVI 617

Query: 211 TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM 270
           TY+ L+ G CG  DLE+ARK+L+ +   ++                              
Sbjct: 618 TYRSLIGGFCGTGDLEEARKILERLERDEN------------------------------ 647

Query: 271 LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR 330
               C+ D+     +++G C+ GR+  AL++L + +      P    +  +I GL     
Sbjct: 648 ----CKADMFAYRVMMDGLCRTGRMSAALELL-EAIKQSGTPPRHDIYVALIRGLCQGKE 702

Query: 331 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
           + +A+ +L ++   R   P    Y AV++ L R  R EEA  + + +LG
Sbjct: 703 LGKAMEVLEEMTLSRKSRPNAEAYEAVIQELAREGRHEEANALADELLG 751



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 93/201 (46%), Gaps = 34/201 (16%)

Query: 334 ALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVI 393
           AL   +    Q+G+   + TYN +   L R RR++E   +       G+  +  TYA+VI
Sbjct: 7   ALRFFHWASKQQGFDHNVYTYNRLFEALLRARRIDETCHILKNGWPPGITPNVFTYAVVI 66

Query: 394 DGLCESNQLDEAKRFWDDIVWPSNIHDNYVY----------------------------- 424
            GLC+S  LD+A    +++     + D  +Y                             
Sbjct: 67  QGLCKSGDLDKACELLEEMRESGPVPDAAIYNFVIHALCKARNTAKALDYFRSMECEKNV 126

Query: 425 ---AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
                MI GLC++ ++ EA  +  ++   G  PN   YNV+I+G CK+     AY +L+E
Sbjct: 127 ITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKE 186

Query: 482 MRKNGLNPDAVTWRILDKLHG 502
           M+++GL P+ VT+  +  +HG
Sbjct: 187 MKESGLAPNVVTYSTV--IHG 205


>gi|302809105|ref|XP_002986246.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
 gi|300146105|gb|EFJ12777.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
          Length = 725

 Score =  266 bits (681), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 159/534 (29%), Positives = 275/534 (51%), Gaps = 40/534 (7%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC L +V EA ++   M  RG  PNV++Y TL+ G+CR G++D A ++  +M   G 
Sbjct: 121 INGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGY 180

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN++TY+ ++ G+   R ++ A     +L++ M+E      +   ++ +VDSL + G V
Sbjct: 181 RPNAITYNNIMHGLCSGRKLDSA----LQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKV 236

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           ++  R+ E M              ++  LC++G+   A+ ++  M + G +P++V+YN+I
Sbjct: 237 DDACRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTI 296

Query: 181 VHGLCKHGGCMRAYQLLEE-----------------------------------GIQFGY 205
           + G CK G    AY LLEE                                    ++ GY
Sbjct: 297 IDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGY 356

Query: 206 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 265
           +P+  TY  L++  C + ++E+A ++L  M+ K  V      N  +  LC      E + 
Sbjct: 357 VPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVL 416

Query: 266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 325
           +L  ML   C PD++T NT+I+  CK  R++ A ++ N ++    C P+ VT+ +++ GL
Sbjct: 417 LLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFN-LIQESGCTPNLVTYNSLVHGL 475

Query: 326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 385
               R  +A  LL ++  ++G SP I+TYN V+ GL + +RV+ A ++F  ML  G+  D
Sbjct: 476 CKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPD 535

Query: 386 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY 445
             TY+IVI  LC+   +DEA    + ++          Y  +I G C++G + +A+  L 
Sbjct: 536 DVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQ 595

Query: 446 ELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
            L+  G  P++V +++ ID   K    R+A ++L  M + GL PD VT+  L K
Sbjct: 596 LLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLK 649



 Score =  244 bits (622), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 149/500 (29%), Positives = 265/500 (53%), Gaps = 11/500 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   +  +A   F +M S+   P+ V+Y T+I+G  ++  +D A ++ +EM   G  PN
Sbjct: 20  LCDAGQCSDAVLHFREM-SKTCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPN 78

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             +Y+ ++ G  +   VE A  L+ ++  R    + +S     +  +++ LC+   V+E 
Sbjct: 79  VFSYNTVLHGFCKANRVENALWLLEQMVMRGCPPDVVS-----YTTVINGLCKLDQVDEA 133

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            R+ + M Q          G ++D  CR G   GA  +V  M +RG  P+ ++YN+I+HG
Sbjct: 134 CRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHG 193

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSE-HTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           LC       A QL +E  + G  P +  TY  +V+ L     ++ A ++++ M+SK    
Sbjct: 194 LCSGRKLDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEAMVSKGCSP 253

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
                +  L  LC      E   +L  M ++ C P+++T NT+I+G CK+GRI+EA  +L
Sbjct: 254 NVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLL 313

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
            +MV G  C P+ VT+T ++      G+ ++A+ L+ +VM ++GY P + TYN++L    
Sbjct: 314 EEMVDGG-CQPNVVTYTVLLDAFCKCGKAEDAIGLV-EVMVEKGYVPNLFTYNSLLDMFC 371

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
           +   VE A ++ + M+  G V +  +Y  VI GLC++ ++ E     + ++  + + D  
Sbjct: 372 KKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIV 431

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
            +  +I  +C++ ++  A      + +SG TPN+V YN ++ G CK     +A  +LREM
Sbjct: 432 TFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREM 491

Query: 483 -RKNGLNPDAVTWR-ILDKL 500
            RK G +PD +T+  ++D L
Sbjct: 492 TRKQGCSPDIITYNTVIDGL 511



 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 110/334 (32%), Positives = 177/334 (52%), Gaps = 4/334 (1%)

Query: 165 MRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESD 224
           M ++GL      + SI+ GLC  G C  A     E +     P   TY  ++ GL     
Sbjct: 1   MNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHFRE-MSKTCPPDSVTYNTMINGLSKSDR 59

Query: 225 LEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNT 284
           L+ A ++L+ M+           N  L   C        L +L  M+   C PDV++  T
Sbjct: 60  LDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVMRGCPPDVVSYTT 119

Query: 285 VINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ 344
           VING CK+ +++EA +V++ M+  + C P+ +T+ T++ G   VG +  A+ L+ + M +
Sbjct: 120 VINGLCKLDQVDEACRVMDKMIQ-RGCQPNVITYGTLVDGFCRVGDLDGAVELVRK-MTE 177

Query: 345 RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV-ADSTTYAIVIDGLCESNQLD 403
           RGY P  +TYN ++ GL   R+++ A ++F  M   G    D  TY+ ++D L +S ++D
Sbjct: 178 RGYRPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVD 237

Query: 404 EAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463
           +A R  + +V      +   Y++++ GLC++GK+ EA   L  +  SG +PNIV YN +I
Sbjct: 238 DACRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTII 297

Query: 464 DGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           DG CKL    EAY +L EM   G  P+ VT+ +L
Sbjct: 298 DGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVL 331



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 93/348 (26%), Positives = 171/348 (49%), Gaps = 7/348 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C    V  A +L   M  +G VPNVVSY T+I G C+  ++     + ++M     
Sbjct: 367 LDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNC 426

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P+ +T++ ++  + +T  V+ A    ++L+  + +E   + N   + +LV  LC+    
Sbjct: 427 VPDIVTFNTIIDAMCKTYRVDIA----YELF-NLIQESGCTPNLVTYNSLVHGLCKSRRF 481

Query: 121 NEVFRIAEDMPQGKSVNEEFAC-GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           ++   +  +M + +  + +      +ID LC+S R   A ++   M   GL P  V+Y+ 
Sbjct: 482 DQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSI 541

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++  LCK      A  +LE  ++ G+ P   TY  L++G C   +L+KA ++LQ +LSK 
Sbjct: 542 VISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKG 601

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                   +I++  L       +   +L  ML+    PD +T NT++ GFC   R E+A+
Sbjct: 602 SYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASRTEDAV 661

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGY 347
            +   M     C PD  T+TT++  L++    ++ L  + + M   G+
Sbjct: 662 DLFEVMRQCG-CEPDNATYTTLVGHLVDKKSYKDLLAEVSKSMVDTGF 708



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 104/194 (53%), Gaps = 3/194 (1%)

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
           +I+ GL + G+  +A+ L ++ M  +   P  VTYN ++ GL +  R+++A  +   M+ 
Sbjct: 15  SILRGLCDAGQCSDAV-LHFREM-SKTCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVD 72

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
            G   +  +Y  V+ G C++N+++ A    + +V      D   Y  +I GLC+  ++ E
Sbjct: 73  NGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVMRGCPPDVVSYTTVINGLCKLDQVDE 132

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW-RILD 498
           A   + +++  G  PN++ Y  ++DG C++     A +++R+M + G  P+A+T+  I+ 
Sbjct: 133 ACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMH 192

Query: 499 KLHGNRGNDFGLRI 512
            L   R  D  L++
Sbjct: 193 GLCSGRKLDSALQL 206


>gi|302780485|ref|XP_002972017.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
 gi|300160316|gb|EFJ26934.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
          Length = 1116

 Score =  265 bits (677), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 173/567 (30%), Positives = 278/567 (49%), Gaps = 72/567 (12%)

Query: 1    MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEM--RHC 58
            +D  C  SRV EA +L   M SRG  PNVV++ ++I G C++     A+++FD+M  +H 
Sbjct: 437  VDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQMFDDMALKH- 495

Query: 59   GVLPNSLTYSVLVRGVLRTRDVERANVLM---------------------------FKLW 91
            G++P+ +TY  L+ G+ RT    +A  L+                            +++
Sbjct: 496  GLVPDKITYCTLIDGLFRTGRAGQAEALLDAMPDPDTYAFNCCINGLSKLGDVSRALQVY 555

Query: 92   ERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCR 151
             RM E E L  +   F  L+   C+ G   +   + E+M       +    G +ID LC+
Sbjct: 556  NRMLELE-LVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCK 614

Query: 152  SGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHT 211
            +G+   A  ++ +M   G+ P++V+YN++VHGLCK G    A Q LEE +  G +P   T
Sbjct: 615  AGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSIT 674

Query: 212  YKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFML 271
            Y  LV  LC  S  + A +++  + S      T   NI +  L       + + VL  M+
Sbjct: 675  YGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGQTEQAITVLEEMV 734

Query: 272  QTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA--GKFCAPDAVTFTTIIFGLLNVG 329
                 PDV+T NT+I+  CK G +EEA ++  DM +   + C P+ VT++ +I GL  VG
Sbjct: 735  GKGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRVSRCCVPNVVTYSVLINGLCKVG 794

Query: 330  RIQEALNLLYQVMPQR-GYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCML--GIGVVADS 386
            RI EA  L+ ++M +     P I+TYN+ L GL +   + EA E+   +    + V  D+
Sbjct: 795  RIDEARELIQEMMRKSCDVLPNIITYNSFLDGLCKQSMMAEACELMRSLRDGSLRVSPDT 854

Query: 387  TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGK---------- 436
             T++ +IDGLC+  Q DEA   +DD++    + +   Y  ++ GLC++ K          
Sbjct: 855  VTFSTLIDGLCKCGQTDEACNVFDDMIAGGYVPNVVTYNVLMNGLCKTDKMERAHAMIES 914

Query: 437  -------------------------IHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSM 471
                                     + EA+  L+ +   G TPN+V +N +IDG CK   
Sbjct: 915  MVDKGVTPDVITYSVLVDAFCKASHVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDQ 974

Query: 472  KREAYQILREMR-KNGLNPDAVTWRIL 497
              EA+Q+  +M  K+GL PD +T+  L
Sbjct: 975  SGEAFQMFDDMTLKHGLAPDKITYCTL 1001



 Score =  248 bits (633), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 147/496 (29%), Positives = 249/496 (50%), Gaps = 45/496 (9%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC  + +G   +LF ++  RGH P+VV+Y TLI   C+ G+++ A ++  +M     
Sbjct: 223 INGLCKSNELGAGMELFEELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRSC 282

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +PN +TYSVL+ G+ +   ++ A  L   + E  ++  D+  N   + + +D LC++   
Sbjct: 283 VPNVVTYSVLINGLCKVGRIDEAREL---IQEMTRKSCDVLPNIITYNSFLDGLCKQSMT 339

Query: 121 NEVFRIAEDMPQG--KSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
            E   +   +  G  +   +      +ID LC+ G+   A  V   M   G  P++++YN
Sbjct: 340 AEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYN 399

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
           ++V+GLCK     RA+ ++E  +  G  P   TY VLV+  C  S +++A ++L  M S+
Sbjct: 400 ALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASR 459

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
                                               C P+V+T N++I+G CK  R  EA
Sbjct: 460 G-----------------------------------CTPNVVTFNSIIDGLCKSDRSGEA 484

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
            ++ +DM       PD +T+ T+I GL   GR  +A  LL   MP     P    +N  +
Sbjct: 485 FQMFDDMALKHGLVPDKITYCTLIDGLFRTGRAGQAEALL-DAMPD----PDTYAFNCCI 539

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
            GL +L  V  A +V+N ML + +V D  T+ I+I G C++   ++A   ++++V  +  
Sbjct: 540 NGLSKLGDVSRALQVYNRMLELELVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQ 599

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI 478
            D   + A+I GLC++G++  A   L  + + GV PN+V YN ++ G CK     EA Q 
Sbjct: 600 PDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQF 659

Query: 479 LREMRKNGLNPDAVTW 494
           L EM  +G  PD++T+
Sbjct: 660 LEEMVSSGCVPDSITY 675



 Score =  246 bits (629), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 147/501 (29%), Positives = 254/501 (50%), Gaps = 14/501 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEM--RHC 58
           +D LC    + EA +L  DM SR  VPNVV+Y+ LI+G C+ G +D A ++  EM  + C
Sbjct: 258 IDSLCKAGDLEEARRLHGDMSSRSCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSC 317

Query: 59  GVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREG 118
            VLPN +TY+  + G+ +      A  LM  L +       +S +   F+ L+D LC+ G
Sbjct: 318 DVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLR---VSPDTVTFSTLIDGLCKCG 374

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
            ++E   + +DM  G  V        +++ LC++ +   A  ++  M  +G+TP +++Y+
Sbjct: 375 QIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYS 434

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
            +V   CK      A +LL      G  P+  T+  +++GLC      +A ++   M  K
Sbjct: 435 VLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQMFDDMALK 494

Query: 239 KDV--DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIE 296
             +  D+   C +           T        +L     PD    N  ING  K+G + 
Sbjct: 495 HGLVPDKITYCTLIDGLF-----RTGRAGQAEALLDAMPDPDTYAFNCCINGLSKLGDVS 549

Query: 297 EALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
            AL+V N M+  +   PD VTF  +I G    G  ++A + L++ M  +   P ++T+ A
Sbjct: 550 RALQVYNRMLELEL-VPDKVTFNILIAGACKAGNFEQA-SALFEEMVAKNLQPDVMTFGA 607

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416
           ++ GL +  +VE A+++ + M  +GV  +  TY  ++ GLC+S +++EA +F +++V   
Sbjct: 608 LIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSG 667

Query: 417 NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAY 476
            + D+  Y +++  LCR+ +  +A+  + EL   G  P+ V YN+++DG  K     +A 
Sbjct: 668 CVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGQTEQAI 727

Query: 477 QILREMRKNGLNPDAVTWRIL 497
            +L EM   G +PD VT+  L
Sbjct: 728 TVLEEMVGKGHHPDVVTYNTL 748



 Score =  222 bits (566), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 159/570 (27%), Positives = 263/570 (46%), Gaps = 89/570 (15%)

Query: 6    GLSRVGE---AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
            GLS++G+   A +++  M     VP+ V++  LI G C+ G  + A  +F+EM    + P
Sbjct: 541  GLSKLGDVSRALQVYNRMLELELVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQP 600

Query: 63   NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
            + +T+  L+ G+ +   VE A  ++  L   +    ++   NA    LV  LC+ G + E
Sbjct: 601  DVMTFGALIDGLCKAGQVEAARDIL-DLMGNLGVPPNVVTYNA----LVHGLCKSGRIEE 655

Query: 123  VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
              +  E+M     V +    G ++ +LCR+ R   A ++V  ++  G  P  V+YN +V 
Sbjct: 656  ACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVD 715

Query: 183  GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
            GL K G   +A  +LEE +  G+ P   TY  L++ LC   DLE+AR++   M S+  V 
Sbjct: 716  GLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSR--VS 773

Query: 243  RTRICNI-----YLRALCLIKNPTELLNVLVFMLQTQCQ--PDVITLNTVINGFCKMGRI 295
            R  + N+      +  LC +    E   ++  M++  C   P++IT N+ ++G CK   +
Sbjct: 774  RCCVPNVVTYSVLINGLCKVGRIDEARELIQEMMRKSCDVLPNIITYNSFLDGLCKQSMM 833

Query: 296  EEALKVLNDMVAGKF-CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTY 354
             EA +++  +  G    +PD VTF+T+I GL   G+  EA N+ +  M   GY P +VTY
Sbjct: 834  AEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACNV-FDDMIAGGYVPNVVTY 892

Query: 355  NAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAI----------------------- 391
            N ++ GL +  ++E A  +   M+  GV  D  TY++                       
Sbjct: 893  NVLMNGLCKTDKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASHVDEALELLHGMAS 952

Query: 392  ------------VIDGLCESNQLDEAKRFWDDIV-----------------------WPS 416
                        +IDGLC+S+Q  EA + +DD+                        W  
Sbjct: 953  RGCTPNVVTFNSIIDGLCKSDQSGEAFQMFDDMTLKHGLAPDKITYCTLIDGLFRTGWAG 1012

Query: 417  NIH---------DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGAC 467
                        D Y +   I GL + G +  A+H + EL    + P+ V +N++I GAC
Sbjct: 1013 QAEVLLDAMPDPDTYAFNCCINGLSKLGDVSRALHRMLEL---ELVPDKVTFNILIAGAC 1069

Query: 468  KLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            K     +A  +  EM    L PD +T+  L
Sbjct: 1070 KAGNFEQASALFEEMVAKNLQPDVMTFGAL 1099



 Score =  197 bits (502), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 137/510 (26%), Positives = 235/510 (46%), Gaps = 80/510 (15%)

Query: 1    MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
            +D LC   +V  A  +   M + G  PNVV+Y  L+HG C++G ++ A +  +EM   G 
Sbjct: 609  IDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGC 668

Query: 61   LPNSLTYSVLVRGVLRTRDVERA-------------------NVLMFKLWERMKEEEDLS 101
            +P+S+TY  LV  + R    + A                   N+L+  LW+  + E+ ++
Sbjct: 669  VPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGQTEQAIT 728

Query: 102  V-----------NNAAFANLVDSLCREGYVNEVFRIAEDMPQGKS---VNEEFACGHMID 147
            V           +   +  L+DSLC+ G + E  R+  DM    S   V        +I+
Sbjct: 729  VLEEMVGKGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRVSRCCVPNVVTYSVLIN 788

Query: 148  SLCRSGRNHGASRVVYVMRKRG--LTPSLVSYNSIVHGLCKHG--------------GCM 191
             LC+ GR   A  ++  M ++   + P++++YNS + GLCK                G +
Sbjct: 789  GLCKVGRIDEARELIQEMMRKSCDVLPNIITYNSFLDGLCKQSMMAEACELMRSLRDGSL 848

Query: 192  R-----------------------AYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKA 228
            R                       A  + ++ I  GY+P+  TY VL+ GLC    +E+A
Sbjct: 849  RVSPDTVTFSTLIDGLCKCGQTDEACNVFDDMIAGGYVPNVVTYNVLMNGLCKTDKMERA 908

Query: 229  RKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVING 288
              +++ M+ K         ++ + A C   +  E L +L  M    C P+V+T N++I+G
Sbjct: 909  HAMIESMVDKGVTPDVITYSVLVDAFCKASHVDEALELLHGMASRGCTPNVVTFNSIIDG 968

Query: 289  FCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYS 348
             CK  +  EA ++ +DM      APD +T+ T+I GL   G   +A  +L   MP     
Sbjct: 969  LCKSDQSGEAFQMFDDMTLKHGLAPDKITYCTLIDGLFRTGWAGQA-EVLLDAMPD---- 1023

Query: 349  PGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRF 408
            P    +N  + GL +L  V  A    + ML + +V D  T+ I+I G C++   ++A   
Sbjct: 1024 PDTYAFNCCINGLSKLGDVSRA---LHRMLELELVPDKVTFNILIAGACKAGNFEQASAL 1080

Query: 409  WDDIVWPSNIHDNYVYAAMIKGLCRSGKIH 438
            ++++V  +   D   + A+I GLC++G++ 
Sbjct: 1081 FEEMVAKNLQPDVMTFGALIDGLCKAGQVE 1110



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 117/393 (29%), Positives = 192/393 (48%), Gaps = 45/393 (11%)

Query: 145 MIDSLCRSGRNHGASRVVY-VMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQF 203
           ++ SLCR+G    A  +    M + G+ P++V+YN+I++GLCK        +L EE ++ 
Sbjct: 186 VLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEELVER 245

Query: 204 GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTEL 263
           G+ P   TY  L++ LC   DLE+AR++   M S+  V      ++ +  LC +    E 
Sbjct: 246 GHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRSCVPNVVTYSVLINGLCKVGRIDEA 305

Query: 264 LNVLVFMLQTQCQ--PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKF-CAPDAVTFTT 320
             ++  M +  C   P++IT N+ ++G CK     EA +++  +  G    +PD VTF+T
Sbjct: 306 RELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFST 365

Query: 321 IIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI 380
           +I GL   G+I EA + ++  M   GY P ++TYNA++ GL +  ++E A  +   M+  
Sbjct: 366 LIDGLCKCGQIDEACS-VFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDK 424

Query: 381 GVVADSTTYAI-----------------------------------VIDGLCESNQLDEA 405
           GV  D  TY++                                   +IDGLC+S++  EA
Sbjct: 425 GVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEA 484

Query: 406 KRFWDDIVWPSN-IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
            + +DD+      + D   Y  +I GL R+G+  +A   L  + D    P+   +N  I+
Sbjct: 485 FQMFDDMALKHGLVPDKITYCTLIDGLFRTGRAGQAEALLDAMPD----PDTYAFNCCIN 540

Query: 465 GACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           G  KL     A Q+   M +  L PD VT+ IL
Sbjct: 541 GLSKLGDVSRALQVYNRMLELELVPDKVTFNIL 573



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 102/333 (30%), Positives = 170/333 (51%), Gaps = 43/333 (12%)

Query: 174 LVSYNSIVHGLCKHGGCMRAYQLLE-EGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVL 232
           +  YN ++  LC+ G   RA ++   E  + G  P+  TY  ++ GLC  ++L    ++ 
Sbjct: 180 VADYNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELF 239

Query: 233 QFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKM 292
           + ++ +                                      PDV+T NT+I+  CK 
Sbjct: 240 EELVERGH-----------------------------------HPDVVTYNTLIDSLCKA 264

Query: 293 GRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYS--PG 350
           G +EEA ++  DM + + C P+ VT++ +I GL  VGRI EA  L+ Q M ++     P 
Sbjct: 265 GDLEEARRLHGDM-SSRSCVPNVVTYSVLINGLCKVGRIDEARELI-QEMTRKSCDVLPN 322

Query: 351 IVTYNAVLRGLFRLRRVEEAKEVFNCML--GIGVVADSTTYAIVIDGLCESNQLDEAKRF 408
           I+TYN+ L GL +     EA E+   +    + V  D+ T++ +IDGLC+  Q+DEA   
Sbjct: 323 IITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSV 382

Query: 409 WDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACK 468
           +DD++    + +   Y A++ GLC++ K+  A   +  +VD GVTP+++ Y+V++D  CK
Sbjct: 383 FDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCK 442

Query: 469 LSMKREAYQILREMRKNGLNPDAVTW-RILDKL 500
            S   EA ++L  M   G  P+ VT+  I+D L
Sbjct: 443 ASRVDEALELLHGMASRGCTPNVVTFNSIIDGL 475



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 77/255 (30%), Positives = 126/255 (49%), Gaps = 8/255 (3%)

Query: 248 NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMG-RIEEALKVLNDMV 306
           N YL  L    +P + +++    L  +C+P+  T +T++    K G  +E  L     + 
Sbjct: 115 NKYLNLLVKSGSPAKAIDLFRSRLPPRCRPNHFTYSTLLRATYKAGGDVERTLGFFRRIR 174

Query: 307 AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 366
           +      D   +  ++  L   G    AL +    M + G +P IVTYN ++ GL +   
Sbjct: 175 SSSRSVAD---YNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNE 231

Query: 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAA 426
           +    E+F  ++  G   D  TY  +ID LC++  L+EA+R   D+   S + +   Y+ 
Sbjct: 232 LGAGMELFEELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRSCVPNVVTYSV 291

Query: 427 MIKGLCRSGKIHEAVHFLYELV--DSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484
           +I GLC+ G+I EA   + E+      V PNI+ YN  +DG CK SM  EA +++R +R 
Sbjct: 292 LINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRD 351

Query: 485 NGL--NPDAVTWRIL 497
             L  +PD VT+  L
Sbjct: 352 GSLRVSPDTVTFSTL 366


>gi|302762673|ref|XP_002964758.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
 gi|300166991|gb|EFJ33596.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
          Length = 552

 Score =  264 bits (675), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 163/515 (31%), Positives = 272/515 (52%), Gaps = 17/515 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMR-HCG 59
           +D L    RV EA+ LF + +++G  P VV+Y T+I G C+ G ++ A  ++D+M  H G
Sbjct: 37  IDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMIDGLCKCGRIENALTLYDDMAIHFG 96

Query: 60  VLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGY 119
             P  +TYS L+ G+ R  +V++   L+ ++  R       + N   +  LV++L  +G 
Sbjct: 97  FRPTVVTYSTLIDGLCRDHEVDKGCKLLEEMAGR-----GCAPNAVTYNTLVNALLGQGR 151

Query: 120 VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVV--YVMRKRGLTPSLVSY 177
             E F + E M       E    G +I  LC+ G    A RVV    M + GL+P ++++
Sbjct: 152 SKEAFSLLEQMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMFMIESGLSPDVITF 211

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
           NS++ GLCK    + A+ + +  ++ G  P+  TY  L++GL   + +++A ++L  M+ 
Sbjct: 212 NSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVE 271

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
                 T   +  +  L  +    + + VL  M    C PD +T NT+I+GF K  R+ E
Sbjct: 272 LGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLRE 331

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           A+ +L +M+   F  P  VT+TT+  GL   GR  EA+ +L   M  RG +P  +TY+++
Sbjct: 332 AVGLLREMLEAGF-HPSVVTYTTLCHGLCRSGRFDEAVEIL-DYMAARGCAPNAITYSSI 389

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADST-TYAIVIDGLCESNQLDEAKRFWDDIVWPS 416
           + GL +  RV EA   F  M    VVA     Y+ +IDGLC++ ++DEA  F + ++   
Sbjct: 390 VDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGKIDEAYEFLERMIRAG 449

Query: 417 NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAY 476
            I D   ++ +I GLC +G+I   +     + + G  P++V Y  ++D  C+ S   EA+
Sbjct: 450 RIPDVVTFSILINGLCDAGRIDTGLELFRGMAERGCVPDMVTYATLVDRLCRASRVDEAF 509

Query: 477 QILREMRKNGLNPDAVTWRILDKLHG----NRGND 507
            + ++MR +GL+PD  T R +  +HG    NR  D
Sbjct: 510 DLFQQMRSDGLSPDRSTRRTM--IHGLLEVNRDED 542



 Score =  247 bits (631), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 152/505 (30%), Positives = 264/505 (52%), Gaps = 19/505 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   +V +A  LF  M  +   P+VV+Y  LI G  +   +  AY +F+E R  G 
Sbjct: 2   IDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGC 61

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P  +TY+ ++ G+ +   +E A      L++ M            ++ L+D LCR+  V
Sbjct: 62  HPTVVTYNTMIDGLCKCGRIENA----LTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEV 117

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           ++  ++ E+M              ++++L   GR+  A  ++  M   G  P L+++  I
Sbjct: 118 DKGCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPELITFGLI 177

Query: 181 VHGLCKHGGCMRAYQLLEE--GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
           + GLCK G    A+++++E   I+ G  P   T+  +++GLC E  +  A  V +  L +
Sbjct: 178 IKGLCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALER 237

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
                    +  +  L  +    E L +L  M++  C+ + +T +TV++G  K+GR+E+A
Sbjct: 238 GCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDA 297

Query: 299 LKVLNDMV-AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           + VL  M  AG  C PDAVT+ T+I G     R++EA+ LL + M + G+ P +VTY  +
Sbjct: 298 VVVLRQMRDAG--CLPDAVTYNTLIDGFFKRQRLREAVGLLRE-MLEAGFHPSVVTYTTL 354

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFW-----DDI 412
             GL R  R +EA E+ + M   G   ++ TY+ ++DGLC++ ++ EA  ++     D++
Sbjct: 355 CHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEV 414

Query: 413 VWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMK 472
           V P  I     Y+A+I GLC++GKI EA  FL  ++ +G  P++V ++++I+G C     
Sbjct: 415 VAPHVI----AYSALIDGLCKAGKIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRI 470

Query: 473 REAYQILREMRKNGLNPDAVTWRIL 497
               ++ R M + G  PD VT+  L
Sbjct: 471 DTGLELFRGMAERGCVPDMVTYATL 495



 Score =  230 bits (586), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 142/467 (30%), Positives = 242/467 (51%), Gaps = 11/467 (2%)

Query: 35  LIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERM 94
           +I G C++ ++D A  +F +M    + P+ +TY  L+ G+ + R V+ A    + L+E  
Sbjct: 1   MIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEA----YDLFEEA 56

Query: 95  KEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFAC-GHMIDSLCRSG 153
           +  +        +  ++D LC+ G +     + +DM               +ID LCR  
Sbjct: 57  R-AKGCHPTVVTYNTMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDH 115

Query: 154 RNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYK 213
                 +++  M  RG  P+ V+YN++V+ L   G    A+ LLE+    G  P   T+ 
Sbjct: 116 EVDKGCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPELITFG 175

Query: 214 VLVEGLCGESDLEKARKVLQ--FMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFML 271
           ++++GLC E ++E A +V+   FM+           N  L  LC  +   +  NV    L
Sbjct: 176 LIIKGLCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRAL 235

Query: 272 QTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRI 331
           +  C+P+V+T +T+I+G  KM +++EAL++L  MV    C  + VT++T++ GLL VGR+
Sbjct: 236 ERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVE-LGCRANTVTYSTVVDGLLKVGRM 294

Query: 332 QEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAI 391
           ++A+ +L Q M   G  P  VTYN ++ G F+ +R+ EA  +   ML  G      TY  
Sbjct: 295 EDAVVVLRQ-MRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTT 353

Query: 392 VIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELV-DS 450
           +  GLC S + DEA    D +       +   Y++++ GLC++G++ EA+ +  ++  D 
Sbjct: 354 LCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDE 413

Query: 451 GVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            V P+++ Y+ +IDG CK     EAY+ L  M + G  PD VT+ IL
Sbjct: 414 VVAPHVIAYSALIDGLCKAGKIDEAYEFLERMIRAGRIPDVVTFSIL 460



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 95/180 (52%), Gaps = 2/180 (1%)

Query: 321 IIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI 380
           +I GL    ++ +A+ L  Q++ +  Y P +VTY A++ GL + RRV+EA ++F      
Sbjct: 1   MIDGLCKSRKVDKAITLFKQMVDKAIY-PDVVTYGALIDGLGKQRRVKEAYDLFEEARAK 59

Query: 381 GVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV-YAAMIKGLCRSGKIHE 439
           G      TY  +IDGLC+  +++ A   +DD+          V Y+ +I GLCR  ++ +
Sbjct: 60  GCHPTVVTYNTMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDK 119

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
               L E+   G  PN V YN +++        +EA+ +L +M  NG  P+ +T+ ++ K
Sbjct: 120 GCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPELITFGLIIK 179


>gi|302806665|ref|XP_002985064.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
 gi|300147274|gb|EFJ13939.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
          Length = 1636

 Score =  256 bits (654), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 151/508 (29%), Positives = 261/508 (51%), Gaps = 40/508 (7%)

Query: 27   PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVL 86
            PN+ ++T LIHG CR G++  AY++  EM   GV  N + ++V+++G+   R ++ A   
Sbjct: 875  PNMFTFTILIHGLCRAGDIGTAYELLKEMPRHGVPQNVILHNVVIKGLCSARKLDSA--- 931

Query: 87   MFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMI 146
              +L++ M+E      +   ++ +VDSL + G V++  R+ EDM              ++
Sbjct: 932  -LELFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEDMVSKGCSPNVVTYSSLL 990

Query: 147  DSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE------- 199
              LC++G+   A+ ++  M + G +P++V+YN+I+ G CK G    AY LLEE       
Sbjct: 991  HGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQ 1050

Query: 200  ----------------------------GIQFGYLPSEHTYKVLVEGLCGESDLEKARKV 231
                                         ++ GY+P+  TY  L++  C + ++E+A ++
Sbjct: 1051 PNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQL 1110

Query: 232  LQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK 291
            L  M+ K  V      N  +  LC      E + +L  ML   C PD++T NT+I+  CK
Sbjct: 1111 LSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCK 1170

Query: 292  MGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGI 351
              R++ A ++ N ++    C P+ VT+ +++ GL    R  +A  LL ++  ++G SP I
Sbjct: 1171 TYRVDIAYELFN-LIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDI 1229

Query: 352  VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDD 411
            +TYN V+ GL + +RV+ A ++F  ML  G+  D  TY+IVI  LC+   +DEA    + 
Sbjct: 1230 ITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLEL 1289

Query: 412  IVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSM 471
            ++          Y  +I G C++G + +A+  L  L+  G  P++V +++ ID   K   
Sbjct: 1290 MLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGR 1349

Query: 472  KREAYQILREMRKNGLNPDAVTWRILDK 499
             R+A ++L  M + GL PD VT+  L K
Sbjct: 1350 LRQAGELLETMLRAGLVPDTVTYNTLLK 1377



 Score =  248 bits (634), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 149/494 (30%), Positives = 248/494 (50%), Gaps = 43/494 (8%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   +  +A   F +M S+   P+ V+Y T+I+G  ++  +D A ++ +EM   G  PN
Sbjct: 206 LCDAGQCSDAVLHFREM-SKTCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPN 264

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             +Y+ ++ G  +   VE A  L+ ++  R    + +S     +  +++ LC+   V+E 
Sbjct: 265 VFSYNTVLHGFCKANRVENALWLLEQMVTRGCPPDVVS-----YTTVINGLCKLDQVDEA 319

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            R+ + M Q          G ++D  CR G   GA  +V  M +RG  P+ ++YN+I+H 
Sbjct: 320 CRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHV 379

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            C+     RA+Q+L+  IQ G  P    Y  ++ G C    L +A  +L+ M+ +     
Sbjct: 380 FCRRNDMERAHQVLQMMIQTGCPPDAINYSTIISGFCKAGKLREAHDLLEQMIRRG---- 435

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                                          C+PDV  L+T+I+  CK   I+ A ++L 
Sbjct: 436 -------------------------------CRPDVACLSTLIDALCKAAAIDSAQELLR 464

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            M  G  CAPD V ++ +I  L    R+ EA + L  ++  R Y P +VTYN+V+ GL +
Sbjct: 465 -MSIGMDCAPDVVAYSILIHALCKAKRLPEAESWLDVMVKNRCY-PDVVTYNSVVDGLCK 522

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
            RR+ +A  +F+ M   GV+ D  TY+IVI   C+ N LD A +  + +     + D   
Sbjct: 523 SRRINDAFLLFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVT 582

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y+A+I GLC++G + +A     E++  G  PN+V YN +IDG CK++   +A ++L  MR
Sbjct: 583 YSALINGLCKAGTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAAEMLEIMR 642

Query: 484 KNGLNPDAVTWRIL 497
           K    PD++T+  L
Sbjct: 643 KQSCTPDSITYTCL 656



 Score =  244 bits (623), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 140/495 (28%), Positives = 254/495 (51%), Gaps = 7/495 (1%)

Query: 4    LCGLSRVGEAHKLFFDMKSRGHVP-NVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
            LC   ++  A +LF +M+  G  P +V +Y+T++    ++G++D A ++ ++M   G  P
Sbjct: 922  LCSARKLDSALELFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEDMVSKGCSP 981

Query: 63   NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
            N +TYS L+ G+ +   ++ A  L+    +RM      S N   +  ++D  C+ G ++E
Sbjct: 982  NVVTYSSLLHGLCKAGKLDEATALL----QRMTRS-GCSPNIVTYNTIIDGHCKLGRIDE 1036

Query: 123  VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
             + + E+M  G           ++D+ C+ G+   A  +V VM ++G  P+L +YNS++ 
Sbjct: 1037 AYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLD 1096

Query: 183  GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
              CK     RA QLL   IQ G +P+  +Y  ++ GLC  + + +   +L+ MLS   V 
Sbjct: 1097 MFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVP 1156

Query: 243  RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
                 N  + A+C          +   + ++ C P+++T N++++G CK  R ++A  +L
Sbjct: 1157 DIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLL 1216

Query: 303  NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
             +M   + C+PD +T+ T+I GL    R+  A  L  Q++   G +P  VTY+ V+  L 
Sbjct: 1217 REMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSD-GLAPDDVTYSIVISSLC 1275

Query: 363  RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
            + R ++EA  V   ML  G    + TY  +IDG C++  LD+A      ++   +  D  
Sbjct: 1276 KWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVV 1335

Query: 423  VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
             ++  I  L + G++ +A   L  ++ +G+ P+ V YN ++ G C  S+  +A  +   M
Sbjct: 1336 TFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASLTEDAVDLFEVM 1395

Query: 483  RKNGLNPDAVTWRIL 497
            R+ G  PD  T+  L
Sbjct: 1396 RQCGCEPDNATYTTL 1410



 Score =  224 bits (570), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 136/480 (28%), Positives = 242/480 (50%), Gaps = 10/480 (2%)

Query: 6   GLS---RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           GLS   R+ +A +L  +M   G  PNV SY T++HG+C+   ++ A  + ++M   G  P
Sbjct: 239 GLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVTRGCPP 298

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           + ++Y+ ++ G+ +   V+ A  +M K+ +R  +      N   +  LVD  CR G ++ 
Sbjct: 299 DVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQP-----NVITYGTLVDGFCRVGDLDG 353

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
              +   M +           +++   CR      A +V+ +M + G  P  ++Y++I+ 
Sbjct: 354 AVELVRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYSTIIS 413

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           G CK G    A+ LLE+ I+ G  P       L++ LC  + ++ A+++L+  +      
Sbjct: 414 GFCKAGKLREAHDLLEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQELLRMSIGMDCAP 473

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
                +I + ALC  K   E  + L  M++ +C PDV+T N+V++G CK  RI +A  + 
Sbjct: 474 DVVAYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRINDAFLLF 533

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
           + M A     PD VT++ +I        +  A  +L + M +    P +VTY+A++ GL 
Sbjct: 534 DRMRAAGV-MPDVVTYSIVIHSFCKDNNLDSAFKML-ERMKEAKCVPDVVTYSALINGLC 591

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
           +   V++A +VF  MLG G   +  TY  +IDGLC+ N++++A    + +   S   D+ 
Sbjct: 592 KAGTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAAEMLEIMRKQSCTPDSI 651

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
            Y  +I GLC + ++ EA   L E+ D G  P+ + Y  ++    K +      Q+L+EM
Sbjct: 652 TYTCLINGLCNASRLEEAWRVLREMKDKGCLPDRMTYGTLLRALQKTNNLELVEQLLKEM 711



 Score =  188 bits (477), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 149/583 (25%), Positives = 257/583 (44%), Gaps = 97/583 (16%)

Query: 4    LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            LC   R+ EA      M      P+VV+Y +++ G C++  ++ A+ +FD MR  GV+P+
Sbjct: 485  LCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRINDAFLLFDRMRAAGVMPD 544

Query: 64   SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             +TYS+++    +  +++ A    FK+ ERMKE + +  +   ++ L++ LC+ G V++ 
Sbjct: 545  VVTYSIVIHSFCKDNNLDSA----FKMLERMKEAKCVP-DVVTYSALINGLCKAGTVDKA 599

Query: 124  FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            F + ++M              +ID LC+  +   A+ ++ +MRK+  TP  ++Y  +++G
Sbjct: 600  FDVFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAAEMLEIMRKQSCTPDSITYTCLING 659

Query: 184  LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD--- 240
            LC       A+++L E    G LP   TY  L+  L   ++LE   ++L+ M + ++   
Sbjct: 660  LCNASRLEEAWRVLREMKDKGCLPDRMTYGTLLRALQKTNNLELVEQLLKEMEATEEGQW 719

Query: 241  -VDRTRICNIYLRALCL----------IKNPTELLNVLVFMLQTQCQPDVITLNTVINGF 289
              +  R+    +R   L          + + T +L+      Q   +P    +  V    
Sbjct: 720  NANGARLHRFVIRGDVLMMAMAVPMAALTSQTRVLDSKDQQGQFSPRPHQYRVTAVAT-- 777

Query: 290  CKMGRIEEALKVLNDMVAGKFCAPDAVTFT----TIIFG--LLNVGRIQEALNLLYQVMP 343
             + G   + +++LN   A ++       FT    T + G  L  V     AL        
Sbjct: 778  -QGGFHHKIVRILNSRFAWEYAETALERFTGKLTTTVVGKVLQGVRNGDAALGFFDWATS 836

Query: 344  QRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN-------------------CMLGI---- 380
            Q GY+    T N +L+ L RL+R ++A +V+                    C  G     
Sbjct: 837  QEGYNHDTYTCNCLLQALLRLKRPKDALQVYRNKLCCSPNMFTFTILIHGLCRAGDIGTA 896

Query: 381  ----------GVVADSTTYAIVIDGLCESNQLDEAKRFWD----------DIVWPSNIHD 420
                      GV  +   + +VI GLC + +LD A   +           D+   S I D
Sbjct: 897  YELLKEMPRHGVPQNVILHNVVIKGLCSARKLDSALELFKEMEESGSCPPDVFTYSTIVD 956

Query: 421  NYV--------------------------YAAMIKGLCRSGKIHEAVHFLYELVDSGVTP 454
            + V                          Y++++ GLC++GK+ EA   L  +  SG +P
Sbjct: 957  SLVKSGKVDDACRLVEDMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSP 1016

Query: 455  NIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            NIV YN +IDG CKL    EAY +L EM   G  P+ VT+ +L
Sbjct: 1017 NIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVL 1059



 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 108/395 (27%), Positives = 196/395 (49%), Gaps = 41/395 (10%)

Query: 137  NEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQL 196
            ++ + C  ++ +L R  R   A +V     K   +P++ ++  ++HGLC+ G    AY+L
Sbjct: 842  HDTYTCNCLLQALLRLKRPKDALQVY--RNKLCCSPNMFTFTILIHGLCRAGDIGTAYEL 899

Query: 197  LEEGIQFGY------------------------------------LPSEHTYKVLVEGLC 220
            L+E  + G                                      P   TY  +V+ L 
Sbjct: 900  LKEMPRHGVPQNVILHNVVIKGLCSARKLDSALELFKEMEESGSCPPDVFTYSTIVDSLV 959

Query: 221  GESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVI 280
                ++ A ++++ M+SK         +  L  LC      E   +L  M ++ C P+++
Sbjct: 960  KSGKVDDACRLVEDMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIV 1019

Query: 281  TLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQ 340
            T NT+I+G CK+GRI+EA  +L +MV G  C P+ VT+T ++      G+ ++A+ L+ +
Sbjct: 1020 TYNTIIDGHCKLGRIDEAYHLLEEMVDGG-CQPNVVTYTVLLDAFCKCGKAEDAIGLV-E 1077

Query: 341  VMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN 400
            VM ++GY P + TYN++L    +   VE A ++ + M+  G V +  +Y  VI GLC++ 
Sbjct: 1078 VMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKAT 1137

Query: 401  QLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYN 460
            ++ E     + ++  + + D   +  +I  +C++ ++  A      + +SG TPN+V YN
Sbjct: 1138 KVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYN 1197

Query: 461  VVIDGACKLSMKREAYQILREM-RKNGLNPDAVTW 494
             ++ G CK     +A  +LREM RK G +PD +T+
Sbjct: 1198 SLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITY 1232



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 122/522 (23%), Positives = 231/522 (44%), Gaps = 45/522 (8%)

Query: 4    LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            LC  ++V E   L   M S   VP++V++ T+I   C+T  +D+AY++F+ ++  G  PN
Sbjct: 1133 LCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPN 1192

Query: 64   SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             +TY+ LV G+ ++R  ++A  L+      M  ++  S +   +  ++D LC+   V+  
Sbjct: 1193 LVTYNSLVHGLCKSRRFDQAEYLL----REMTRKQGCSPDIITYNTVIDGLCKSKRVDRA 1248

Query: 124  FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            +++   M       ++     +I SLC+      A+ V+ +M K G  P  ++Y +++ G
Sbjct: 1249 YKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDG 1308

Query: 184  LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
             CK G   +A ++L+  +  G  P   T+ + ++ L     L +A ++L+ ML    V  
Sbjct: 1309 FCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPD 1368

Query: 244  TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK--- 300
            T   N  L+  C      + +++   M Q  C+PD  T  T++         ++ L    
Sbjct: 1369 TVTYNTLLKGFCDASLTEDAVDLFEVMRQCGCEPDNATYTTLVGHLVDKKSYKDLLAEVS 1428

Query: 301  --------VLNDMVAGKFCA-----PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGY 347
                     LN  ++ K  A      D      I+      G  Q+A   +++ M QR  
Sbjct: 1429 KSMVDTGFKLNHELSSKLEASIEVEADVRLGCAIVDMFGKCGSPQDARK-VFEGMDQR-- 1485

Query: 348  SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI-GVVADSTTYAIVIDGLCESNQLDEAK 406
               +V ++A+L G++   + EE       ++G+ GV  D+ T+  ++   C +  LD A 
Sbjct: 1486 --NVVLWSAML-GVYVFHKQEEQAFGLWRVMGLEGVEPDAVTFLSLLTMCCHAGLLDAAV 1542

Query: 407  RFWDDI-----VWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNV 461
              +  I     + P   H    ++ +I  L R G ++EA   +  +      P+   +N 
Sbjct: 1543 DEFVSISRDYGLEPGVDH----FSCVIDLLGRLGLVNEAEDLMLGM---PCKPSAATWN- 1594

Query: 462  VIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGN 503
                 C LS  +      R +R   LNP   ++ +L  ++  
Sbjct: 1595 -----CLLSAYKICGDFERALRVAELNPTQASYLLLSNMYAQ 1631



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 134/284 (47%), Gaps = 34/284 (11%)

Query: 247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM- 305
           CN  L  L      ++  ++    ++ Q   D +T +T+I+GF + G+I  A ++ ++M 
Sbjct: 129 CNCLLNVLVKAHQYSQAHDLFRSRIEGQWGGDTVTYSTLISGFIRAGKILPAYELFDEMN 188

Query: 306 --------------------------------VAGKFCAPDAVTFTTIIFGLLNVGRIQE 333
                                              K C PD+VT+ T+I GL    R+ +
Sbjct: 189 RKGLKAHAGVHKSILRGLCDAGQCSDAVLHFREMSKTCPPDSVTYNTMINGLSKSDRLDD 248

Query: 334 ALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVI 393
           A+ LL + M   G++P + +YN VL G  +  RVE A  +   M+  G   D  +Y  VI
Sbjct: 249 AIRLLEE-MVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVTRGCPPDVVSYTTVI 307

Query: 394 DGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVT 453
           +GLC+ +Q+DEA R  D ++      +   Y  ++ G CR G +  AV  + ++ + G  
Sbjct: 308 NGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYR 367

Query: 454 PNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           PN + YN ++   C+ +    A+Q+L+ M + G  PDA+ +  +
Sbjct: 368 PNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYSTI 411



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 81/338 (23%), Positives = 152/338 (44%), Gaps = 41/338 (12%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C   ++ EAH L   M  RG  P+V   +TLI   C+   +D A ++          P+
Sbjct: 415 FCKAGKLREAHDLLEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQELLRMSIGMDCAPD 474

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            + YS+L+  + + + +  A     + W  +  +     +   + ++VD LC+   +N+ 
Sbjct: 475 VVAYSILIHALCKAKRLPEA-----ESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRINDA 529

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           F + + M     + +      +I S C+      A +++  M++    P +V+Y+++++G
Sbjct: 530 FLLFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALING 589

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LCK G   +A+ + +E +  G  P+  TY  L++GLC  + +E+A ++L+ M  +     
Sbjct: 590 LCKAGTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAAEMLEIMRKQ----- 644

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                                          C PD IT   +ING C   R+EEA +VL 
Sbjct: 645 ------------------------------SCTPDSITYTCLINGLCNASRLEEAWRVLR 674

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQV 341
           +M   K C PD +T+ T++  L     ++    LL ++
Sbjct: 675 EM-KDKGCLPDRMTYGTLLRALQKTNNLELVEQLLKEM 711


>gi|302769784|ref|XP_002968311.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
 gi|300163955|gb|EFJ30565.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
          Length = 600

 Score =  256 bits (653), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 155/495 (31%), Positives = 264/495 (53%), Gaps = 14/495 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +  LC   R+ +A  L+  M   G+ P+VV+Y TL+HG+C+ G++D A K+FD     G 
Sbjct: 92  LSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGKLDEALKIFDGAVKRGF 151

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P+ +TY+ L+ G  +   ++ A     ++ +RM  E  L  +   + +LV+ LC+ G V
Sbjct: 152 VPDVVTYNALINGFCKADKLDEAQ----RILQRMVSES-LVPDVVTYNSLVNGLCKNGRV 206

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRN-HGASRVVYVMRKRGLTPSLVSYNS 179
           +E   +  D  +G S N       +I  LCR  R    A +++  M   G  P +VSYN+
Sbjct: 207 DEARMLIVD--KGFSPNV-ITYSTLISGLCRELRRLESARQLLEKMVLNGCKPDIVSYNA 263

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++HGL +  G   A +L    ++ GY P   TY +L++GL  E  + +A ++   ++   
Sbjct: 264 LIHGLAREQGVSEALKLFGSVLRQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHG 323

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                    +++  LC      + L +L  M +  C PDV++ N VING CK  R++EA 
Sbjct: 324 LEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAE 383

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
            +L+ M A K C+P+A++F T+I G    G+ ++A+   ++ M +RG  P +VTYN ++ 
Sbjct: 384 VLLSGMEA-KGCSPNAISFNTLICGQCRAGKWKKAMTT-FKEMLKRGVKPTVVTYNILVD 441

Query: 360 GLFRLR---RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416
           GL + R   R++EA  +F+ M+  G V D  TY+ +IDGL ++ +LD+A+R    +    
Sbjct: 442 GLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKG 501

Query: 417 NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAY 476
            I + Y Y ++I GLC   K+ EA+     +V+ G  P+ + Y  +I   CK  M  +A 
Sbjct: 502 CIPNVYTYNSLISGLCGLDKVDEALELFVAMVEKGCVPDTITYGTIISALCKQEMVDKAL 561

Query: 477 QILREMRKNGLNPDA 491
            +     + G+ P +
Sbjct: 562 ALFDGSLEAGVVPTS 576



 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 131/437 (29%), Positives = 229/437 (52%), Gaps = 12/437 (2%)

Query: 62  PNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVN 121
           P++ T  +L+R +L++  +E+A+  + +L   +K   D+S     F   +  LCR   + 
Sbjct: 14  PDAYTVGILLRSLLKSGKIEKAHRFVEQLL--VKGLCDIST----FNIYISGLCRASRIG 67

Query: 122 EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
           +   + + M +            ++  LC  GR   A  +   M K G +P +V+YN+++
Sbjct: 68  DAQTVFDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLL 127

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
           HG CK G    A ++ +  ++ G++P   TY  L+ G C    L++A+++LQ M+S+  V
Sbjct: 128 HGFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSESLV 187

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK-MGRIEEALK 300
                 N  +  LC  KN   +    + ++     P+VIT +T+I+G C+ + R+E A +
Sbjct: 188 PDVVTYNSLVNGLC--KN-GRVDEARMLIVDKGFSPNVITYSTLISGLCRELRRLESARQ 244

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +L  MV    C PD V++  +I GL     + EAL L   V+ Q GY P + TYN ++ G
Sbjct: 245 LLEKMVLNG-CKPDIVSYNALIHGLAREQGVSEALKLFGSVLRQ-GYEPEVPTYNILIDG 302

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L +  RV EA E+F+ ++  G+  D+ TY + IDGLC++ ++++A     D+     + D
Sbjct: 303 LLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPD 362

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              + A+I GLC+  ++ EA   L  +   G +PN + +N +I G C+    ++A    +
Sbjct: 363 VVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFK 422

Query: 481 EMRKNGLNPDAVTWRIL 497
           EM K G+ P  VT+ IL
Sbjct: 423 EMLKRGVKPTVVTYNIL 439



 Score =  206 bits (523), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 137/493 (27%), Positives = 251/493 (50%), Gaps = 15/493 (3%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           ++ +AH+    +  +G + ++ ++   I G CR   +  A  VFD MR  G  PN +TY+
Sbjct: 31  KIEKAHRFVEQLLVKG-LCDISTFNIYISGLCRASRIGDAQTVFDGMRKHGFWPNRITYN 89

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
            L+ G+     +  A  L    +ERM +    S +   +  L+   C+ G ++E  +I +
Sbjct: 90  ALLSGLCNGGRMSDAQAL----YERMIKA-GYSPDVVTYNTLLHGFCKVGKLDEALKIFD 144

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
              +   V +      +I+  C++ +   A R++  M    L P +V+YNS+V+GLCK+G
Sbjct: 145 GAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSESLVPDVVTYNSLVNGLCKNG 204

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGE-SDLEKARKVLQFMLSKKDVDRTRIC 247
               A  L+   +  G+ P+  TY  L+ GLC E   LE AR++L+ M+           
Sbjct: 205 RVDEARMLI---VDKGFSPNVITYSTLISGLCRELRRLESARQLLEKMVLNGCKPDIVSY 261

Query: 248 NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA 307
           N  +  L   +  +E L +   +L+   +P+V T N +I+G  K  R+ EA ++ + +V 
Sbjct: 262 NALIHGLAREQGVSEALKLFGSVLRQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVK 321

Query: 308 GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRV 367
                PDA+T+T  I GL   GR+++AL L+ + M ++G  P +V++NAV+ GL + +RV
Sbjct: 322 HGL-EPDAITYTVFIDGLCKAGRVEDAL-LMLKDMDEKGCVPDVVSHNAVINGLCKEKRV 379

Query: 368 EEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAM 427
           +EA+ + + M   G   ++ ++  +I G C + +  +A   + +++          Y  +
Sbjct: 380 DEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNIL 439

Query: 428 IKGLCRS---GKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484
           + GLC++   G+I EA+     +++ G  P++V Y+ +IDG  K     +A ++L  M  
Sbjct: 440 VDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEA 499

Query: 485 NGLNPDAVTWRIL 497
            G  P+  T+  L
Sbjct: 500 KGCIPNVYTYNSL 512



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 87/294 (29%), Positives = 155/294 (52%), Gaps = 7/294 (2%)

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL 264
           Y P  +T  +L+  L     +EKA + ++ +L K   D +   NIY+  LC      +  
Sbjct: 12  YSPDAYTVGILLRSLLKSGKIEKAHRFVEQLLVKGLCDISTF-NIYISGLCRASRIGDAQ 70

Query: 265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 324
            V   M +    P+ IT N +++G C  GR+ +A  +   M+   + +PD VT+ T++ G
Sbjct: 71  TVFDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGY-SPDVVTYNTLLHG 129

Query: 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 384
              VG++ EAL  ++    +RG+ P +VTYNA++ G  +  +++EA+ +   M+   +V 
Sbjct: 130 FCKVGKLDEALK-IFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSESLVP 188

Query: 385 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRS-GKIHEAVHF 443
           D  TY  +++GLC++ ++DEA+    D  +  N+     Y+ +I GLCR   ++  A   
Sbjct: 189 DVVTYNSLVNGLCKNGRVDEARMLIVDKGFSPNV---ITYSTLISGLCRELRRLESARQL 245

Query: 444 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           L ++V +G  P+IV YN +I G  +     EA ++   + + G  P+  T+ IL
Sbjct: 246 LEKMVLNGCKPDIVSYNALIHGLAREQGVSEALKLFGSVLRQGYEPEVPTYNIL 299



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 97/342 (28%), Positives = 160/342 (46%), Gaps = 46/342 (13%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D L    RV EA +LF  +   G  P+ ++YT  I G C+ G ++ A  +  +M   G 
Sbjct: 300 IDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGC 359

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P+ ++++ ++ G+ + + V+ A VL+  +     E +  S N  +F  L+         
Sbjct: 360 VPDVVSHNAVINGLCKEKRVDEAEVLLSGM-----EAKGCSPNAISFNTLI--------- 405

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                                CG      CR+G+   A      M KRG+ P++V+YN +
Sbjct: 406 ---------------------CGQ-----CRAGKWKKAMTTFKEMLKRGVKPTVVTYNIL 439

Query: 181 VHGLCK---HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
           V GLCK    G    A  L +  I+ G +P   TY  L++GL     L+ AR++L  M +
Sbjct: 440 VDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEA 499

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
           K  +      N  +  LC +    E L + V M++  C PD IT  T+I+  CK   +++
Sbjct: 500 KGCIPNVYTYNSLISGLCGLDKVDEALELFVAMVEKGCVPDTITYGTIISALCKQEMVDK 559

Query: 298 ALKVLN-DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLL 338
           AL + +  + AG    P +  + ++I GL  V R+ EAL LL
Sbjct: 560 ALALFDGSLEAG--VVPTSGMYFSLIDGLCAVARVDEALKLL 599


>gi|224134148|ref|XP_002321748.1| predicted protein [Populus trichocarpa]
 gi|222868744|gb|EEF05875.1| predicted protein [Populus trichocarpa]
          Length = 1041

 Score =  254 bits (648), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 163/558 (29%), Positives = 270/558 (48%), Gaps = 76/558 (13%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           R  EA  +  +M S+G  P  V+YT LI G+ R G+   A++V +EM   GV  N  TY+
Sbjct: 321 RCTEAKLMLEEMFSKGLKPGHVAYTALIDGFMRQGDSGEAFRVKEEMLARGVKLNLFTYN 380

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
            LV+GV +  D+E+A+ L+ ++         +  +   + N+++   +E   + V  +  
Sbjct: 381 ALVKGVCKFGDMEKADALLNEMIMV-----GIKPDTQTYNNMIEGYLKEQNTSRVKDLLS 435

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRV--------------------------- 161
           +M +   V   + CG +I+ LCR G    ASRV                           
Sbjct: 436 EMKKSNLVPTAYTCGMIINGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGHVQEG 495

Query: 162 --------VYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYK 213
                   + VM K+G+ P ++ YNS++ GLCK      A   L E I+ G  P+ +TY 
Sbjct: 496 RFQEAVRILKVMDKKGVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYTYG 555

Query: 214 VLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQT 273
            L+ G C   +++ A +  + ML         +C   +   C   + TE  ++   ML  
Sbjct: 556 ALIHGYCKSGEMQVADRYFKEMLGCGIAPNDVVCTALIDGYCKEGSTTEATSIFRCMLGR 615

Query: 274 QCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQE 333
              PDV T + +I+G  + G+++ A+++L++ +  K   PD  T+ +II G    G I +
Sbjct: 616 SVHPDVRTYSALIHGLLRNGKLQGAMELLSEFLE-KGLVPDVFTYNSIISGFCKQGGIGK 674

Query: 334 ALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVI 393
           A  L ++ M Q+G SP I+TYNA++ GL +   +E A+E+F+ + G G+  ++ TYA +I
Sbjct: 675 AFQL-HEYMCQKGISPNIITYNALINGLCKAGEIERARELFDGIPGKGLAHNAVTYATII 733

Query: 394 DGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI------------------------- 428
           DG C+S  L +A R +D++       D++VY+A+I                         
Sbjct: 734 DGYCKSGNLSKAFRLFDEMTLKGVPPDSFVYSALIDGCRKEGNTEKALSLFLESVQKGFA 793

Query: 429 ---------KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
                     G C+SGK+ EA   L ++VD  V P+ V Y ++ID  CK    +EA Q  
Sbjct: 794 STSSLNALMDGFCKSGKVIEANQLLEDMVDKHVKPDHVTYTILIDYHCKTGFLKEAEQFF 853

Query: 480 REMRKNGLNPDAVTWRIL 497
            +M+K  L P+A+T+  L
Sbjct: 854 VDMQKRNLMPNALTYTAL 871



 Score =  215 bits (547), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 136/496 (27%), Positives = 241/496 (48%), Gaps = 9/496 (1%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           E  +L F+M+ +G  P++V+Y  +I G CR GE+D A+++   M   G++ +  TYS+L+
Sbjct: 254 EGKRLLFEMEEKGCSPSLVTYNVVIGGLCRAGEVDEAFELKKLMDKKGLVADVFTYSILI 313

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDM- 130
            G  + +    A +++ +++ +      L   + A+  L+D   R+G   E FR+ E+M 
Sbjct: 314 DGFGKQKRCTEAKLMLEEMFSK-----GLKPGHVAYTALIDGFMRQGDSGEAFRVKEEML 368

Query: 131 PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGC 190
            +G  +N  F    ++  +C+ G    A  ++  M   G+ P   +YN+++ G  K    
Sbjct: 369 ARGVKLNL-FTYNALVKGVCKFGDMEKADALLNEMIMVGIKPDTQTYNNMIEGYLKEQNT 427

Query: 191 MRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIY 250
            R   LL E  +   +P+ +T  +++ GLC    +E A +V + M+S        I    
Sbjct: 428 SRVKDLLSEMKKSNLVPTAYTCGMIINGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTL 487

Query: 251 LRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKF 310
           ++         E + +L  M +   QPDV+  N+VI G CK  ++EEA   L +M+  + 
Sbjct: 488 IKGHVQEGRFQEAVRILKVMDKKGVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIE-RG 546

Query: 311 CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEA 370
             P+  T+  +I G    G +Q A +  ++ M   G +P  V   A++ G  +     EA
Sbjct: 547 LKPNVYTYGALIHGYCKSGEMQVA-DRYFKEMLGCGIAPNDVVCTALIDGYCKEGSTTEA 605

Query: 371 KEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKG 430
             +F CMLG  V  D  TY+ +I GL  + +L  A     + +    + D + Y ++I G
Sbjct: 606 TSIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGAMELLSEFLEKGLVPDVFTYNSIISG 665

Query: 431 LCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD 490
            C+ G I +A      +   G++PNI+ YN +I+G CK      A ++   +   GL  +
Sbjct: 666 FCKQGGIGKAFQLHEYMCQKGISPNIITYNALINGLCKAGEIERARELFDGIPGKGLAHN 725

Query: 491 AVTWRILDKLHGNRGN 506
           AVT+  +   +   GN
Sbjct: 726 AVTYATIIDGYCKSGN 741



 Score =  212 bits (540), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 140/521 (26%), Positives = 256/521 (49%), Gaps = 42/521 (8%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           EA   F   K  G V  ++    L+    +  ++++ ++ ++ M    VL +  TY+ L+
Sbjct: 184 EAVSFFLGAKRNGFVVGLLCCNGLLSDLLKANKLELFWRFYNGMLEANVLHDVYTYTHLI 243

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP 131
               R  + +    L+F++     EE+  S +   +  ++  LCR G V+E F + + M 
Sbjct: 244 NAHFRAGNAKEGKRLLFEM-----EEKGCSPSLVTYNVVIGGLCRAGEVDEAFELKKLMD 298

Query: 132 QGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCM 191
           +   V + F    +ID   +  R   A  ++  M  +GL P  V+Y +++ G  + G   
Sbjct: 299 KKGLVADVFTYSILIDGFGKQKRCTEAKLMLEEMFSKGLKPGHVAYTALIDGFMRQGDSG 358

Query: 192 RAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYL 251
            A+++ EE +  G   +  TY  LV+G+C   D+EKA  +L  M+       T+  N  +
Sbjct: 359 EAFRVKEEMLARGVKLNLFTYNALVKGVCKFGDMEKADALLNEMIMVGIKPDTQTYNNMI 418

Query: 252 RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC 311
                 +N + + ++L  M ++   P   T   +ING C+ G IE+A +V   MV+    
Sbjct: 419 EGYLKEQNTSRVKDLLSEMKKSNLVPTAYTCGMIINGLCRHGSIEDASRVFEIMVSLG-V 477

Query: 312 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK 371
            P+AV +TT+I G +  GR QEA+ +L +VM ++G  P ++ YN+V+ GL + R++EEAK
Sbjct: 478 KPNAVIYTTLIKGHVQEGRFQEAVRIL-KVMDKKGVQPDVLCYNSVIIGLCKSRKMEEAK 536

Query: 372 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI----VWPSNI--------- 418
           +    M+  G+  +  TY  +I G C+S ++  A R++ ++    + P+++         
Sbjct: 537 DYLVEMIERGLKPNVYTYGALIHGYCKSGEMQVADRYFKEMLGCGIAPNDVVCTALIDGY 596

Query: 419 ----------------------HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNI 456
                                  D   Y+A+I GL R+GK+  A+  L E ++ G+ P++
Sbjct: 597 CKEGSTTEATSIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGAMELLSEFLEKGLVPDV 656

Query: 457 VCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
             YN +I G CK     +A+Q+   M + G++P+ +T+  L
Sbjct: 657 FTYNSIISGFCKQGGIGKAFQLHEYMCQKGISPNIITYNAL 697



 Score =  207 bits (527), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 137/506 (27%), Positives = 234/506 (46%), Gaps = 43/506 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC    + +A ++F  M S G  PN V YTTLI G+ + G    A ++   M   GV
Sbjct: 453 INGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKKGV 512

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ L Y+ ++ G+ ++R +E A   + ++ ER      L  N   +  L+   C+ G +
Sbjct: 513 QPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIER-----GLKPNVYTYGALIHGYCKSGEM 567

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
               R  ++M        +  C  +ID  C+ G    A+ +   M  R + P + +Y+++
Sbjct: 568 QVADRYFKEMLGCGIAPNDVVCTALIDGYCKEGSTTEATSIFRCMLGRSVHPDVRTYSAL 627

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +HGL ++G    A +LL E ++ G +P   TY  ++ G C +  + KA     F L +  
Sbjct: 628 IHGLLRNGKLQGAMELLSEFLEKGLVPDVFTYNSIISGFCKQGGIGKA-----FQLHE-- 680

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                       +M Q    P++IT N +ING CK G IE A +
Sbjct: 681 ----------------------------YMCQKGISPNIITYNALINGLCKAGEIERA-R 711

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
            L D + GK  A +AVT+ TII G    G + +A   L+  M  +G  P    Y+A++ G
Sbjct: 712 ELFDGIPGKGLAHNAVTYATIIDGYCKSGNLSKAFR-LFDEMTLKGVPPDSFVYSALIDG 770

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
             +    E+A  +F   +  G  + S+  A+ +DG C+S ++ EA +  +D+V      D
Sbjct: 771 CRKEGNTEKALSLFLESVQKGFASTSSLNAL-MDGFCKSGKVIEANQLLEDMVDKHVKPD 829

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
           +  Y  +I   C++G + EA  F  ++    + PN + Y  ++ G      + E + +  
Sbjct: 830 HVTYTILIDYHCKTGFLKEAEQFFVDMQKRNLMPNALTYTALLSGYNMAGRRSEMFALFD 889

Query: 481 EMRKNGLNPDAVTWRILDKLHGNRGN 506
           EM    + PD VTW ++   H   G+
Sbjct: 890 EMIAKDIEPDGVTWSVMIDAHLKEGD 915



 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 131/486 (26%), Positives = 223/486 (45%), Gaps = 80/486 (16%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   ++ EA     +M  RG  PNV +Y  LIHGYC++GEM VA + F EM  CG+ PN
Sbjct: 526 LCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQVADRYFKEMLGCGIAPN 585

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +  +                                         L+D  C+EG   E 
Sbjct: 586 DVVCTA----------------------------------------LIDGYCKEGSTTEA 605

Query: 124 FRIAEDMPQGKSVNEEFAC-GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
             I   M  G+SV+ +      +I  L R+G+  GA  ++    ++GL P + +YNSI+ 
Sbjct: 606 TSIFRCM-LGRSVHPDVRTYSALIHGLLRNGKLQGAMELLSEFLEKGLVPDVFTYNSIIS 664

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           G CK GG  +A+QL E   Q G  P+  TY  L+ GLC   ++E+AR++   +  K    
Sbjct: 665 GFCKQGGIGKAFQLHEYMCQKGISPNIITYNALINGLCKAGEIERARELFDGIPGK---- 720

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
                                              + +T  T+I+G+CK G + +A ++ 
Sbjct: 721 -------------------------------GLAHNAVTYATIIDGYCKSGNLSKAFRLF 749

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
           ++M   K   PD+  ++ +I G    G  ++AL+L  + + Q+G++    + NA++ G  
Sbjct: 750 DEMTL-KGVPPDSFVYSALIDGCRKEGNTEKALSLFLESV-QKGFAS-TSSLNALMDGFC 806

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
           +  +V EA ++   M+   V  D  TY I+ID  C++  L EA++F+ D+   + + +  
Sbjct: 807 KSGKVIEANQLLEDMVDKHVKPDHVTYTILIDYHCKTGFLKEAEQFFVDMQKRNLMPNAL 866

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
            Y A++ G   +G+  E      E++   + P+ V ++V+ID   K     +  +++ +M
Sbjct: 867 TYTALLSGYNMAGRRSEMFALFDEMIAKDIEPDGVTWSVMIDAHLKEGDHVKTLKLVDDM 926

Query: 483 RKNGLN 488
            K G N
Sbjct: 927 LKKGGN 932



 Score =  161 bits (407), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 113/431 (26%), Positives = 202/431 (46%), Gaps = 45/431 (10%)

Query: 110 LVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRG 169
           L+  L +   +   +R    M +   +++ +   H+I++  R+G      R+++ M ++G
Sbjct: 207 LLSDLLKANKLELFWRFYNGMLEANVLHDVYTYTHLINAHFRAGNAKEGKRLLFEMEEKG 266

Query: 170 LTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKAR 229
            +PSLV+YN ++ GLC+ G    A++L +   + G +    TY +L++G   +    +A+
Sbjct: 267 CSPSLVTYNVVIGGLCRAGEVDEAFELKKLMDKKGLVADVFTYSILIDGFGKQKRCTEAK 326

Query: 230 KVLQFMLSK----KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTV 285
            +L+ M SK      V  T + + ++R      +  E   V   ML    + ++ T N +
Sbjct: 327 LMLEEMFSKGLKPGHVAYTALIDGFMRQ----GDSGEAFRVKEEMLARGVKLNLFTYNAL 382

Query: 286 INGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL---NVGRIQEALNLL---- 338
           + G CK G +E+A  +LN+M+      PD  T+  +I G L   N  R+++ L+ +    
Sbjct: 383 VKGVCKFGDMEKADALLNEMIMVGI-KPDTQTYNNMIEGYLKEQNTSRVKDLLSEMKKSN 441

Query: 339 ---------------------------YQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK 371
                                      +++M   G  P  V Y  +++G  +  R +EA 
Sbjct: 442 LVPTAYTCGMIINGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQEAV 501

Query: 372 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 431
            +   M   GV  D   Y  VI GLC+S +++EAK +  +++      + Y Y A+I G 
Sbjct: 502 RILKVMDKKGVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHGY 561

Query: 432 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 491
           C+SG++  A  +  E++  G+ PN V    +IDG CK     EA  I R M    ++PD 
Sbjct: 562 CKSGEMQVADRYFKEMLGCGIAPNDVVCTALIDGYCKEGSTTEATSIFRCMLGRSVHPDV 621

Query: 492 VTWRILDKLHG 502
            T+  L  +HG
Sbjct: 622 RTYSAL--IHG 630



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 87/322 (27%), Positives = 157/322 (48%), Gaps = 7/322 (2%)

Query: 1    MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
            ++ LC    +  A +LF  +  +G   N V+Y T+I GYC++G +  A+++FDEM   GV
Sbjct: 698  INGLCKAGEIERARELFDGIPGKGLAHNAVTYATIIDGYCKSGNLSKAFRLFDEMTLKGV 757

Query: 61   LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             P+S  YS L+ G  +  + E+A  L  +  ++         + ++   L+D  C+ G V
Sbjct: 758  PPDSFVYSALIDGCRKEGNTEKALSLFLESVQKG------FASTSSLNALMDGFCKSGKV 811

Query: 121  NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
             E  ++ EDM       +      +ID  C++G    A +    M+KR L P+ ++Y ++
Sbjct: 812  IEANQLLEDMVDKHVKPDHVTYTILIDYHCKTGFLKEAEQFFVDMQKRNLMPNALTYTAL 871

Query: 181  VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
            + G    G     + L +E I     P   T+ V+++    E D  K  K++  ML K  
Sbjct: 872  LSGYNMAGRRSEMFALFDEMIAKDIEPDGVTWSVMIDAHLKEGDHVKTLKLVDDMLKKGG 931

Query: 241  VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                 +C++ +  LC  ++ +E+L VL  + +      + T +T++  F K G+++ A +
Sbjct: 932  NVSKNVCHVLIDPLCRKEHVSEVLKVLEKIEEQGLNLSLATCSTLVRCFHKAGKMDGAAR 991

Query: 301  VLNDMVAGKFCAPDAVTFTTII 322
            VL  MV  K+  PD+     +I
Sbjct: 992  VLKSMVRFKW-VPDSTELNDLI 1012



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 100/396 (25%), Positives = 181/396 (45%), Gaps = 4/396 (1%)

Query: 107 FANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMR 166
           F  L+D   ++G  +E         +   V     C  ++  L ++ +     R    M 
Sbjct: 169 FELLIDGYKKKGLFDEAVSFFLGAKRNGFVVGLLCCNGLLSDLLKANKLELFWRFYNGML 228

Query: 167 KRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLE 226
           +  +   + +Y  +++   + G      +LL E  + G  PS  TY V++ GLC   +++
Sbjct: 229 EANVLHDVYTYTHLINAHFRAGNAKEGKRLLFEMEEKGCSPSLVTYNVVIGGLCRAGEVD 288

Query: 227 KARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVI 286
           +A ++ + M  K  V      +I +      K  TE   +L  M     +P  +    +I
Sbjct: 289 EAFELKKLMDKKGLVADVFTYSILIDGFGKQKRCTEAKLMLEEMFSKGLKPGHVAYTALI 348

Query: 287 NGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
           +GF + G   EA +V  +M+A +    +  T+  ++ G+   G +++A  LL + M   G
Sbjct: 349 DGFMRQGDSGEAFRVKEEMLA-RGVKLNLFTYNALVKGVCKFGDMEKADALLNE-MIMVG 406

Query: 347 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
             P   TYN ++ G  + +     K++ + M    +V  + T  ++I+GLC    +++A 
Sbjct: 407 IKPDTQTYNNMIEGYLKEQNTSRVKDLLSEMKKSNLVPTAYTCGMIINGLCRHGSIEDAS 466

Query: 407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466
           R ++ +V      +  +Y  +IKG  + G+  EAV  L  +   GV P+++CYN VI G 
Sbjct: 467 RVFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKKGVQPDVLCYNSVIIGL 526

Query: 467 CKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
           CK     EA   L EM + GL P+  T+  L  +HG
Sbjct: 527 CKSRKMEEAKDYLVEMIERGLKPNVYTYGAL--IHG 560



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 102/449 (22%), Positives = 188/449 (41%), Gaps = 43/449 (9%)

Query: 1    MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
            +D  C      EA  +F  M  R   P+V +Y+ LIHG  R G++  A ++  E    G+
Sbjct: 593  IDGYCKEGSTTEATSIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGAMELLSEFLEKGL 652

Query: 61   LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            +P+  TY+ ++ G  +   + +A    F+L E M  ++ +S N   +  L++ LC+ G +
Sbjct: 653  VPDVFTYNSIISGFCKQGGIGKA----FQLHEYMC-QKGISPNIITYNALINGLCKAGEI 707

Query: 121  NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                 + + +P     +       +ID  C+SG    A R+   M  +G+ P    Y+++
Sbjct: 708  ERARELFDGIPGKGLAHNAVTYATIIDGYCKSGNLSKAFRLFDEMTLKGVPPDSFVYSAL 767

Query: 181  VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
            + G  K G   +A  L  E +Q G+  S  +   L++G C    + +A ++L+ M+ K  
Sbjct: 768  IDGCRKEGNTEKALSLFLESVQKGF-ASTSSLNALMDGFCKSGKVIEANQLLEDMVDKHV 826

Query: 241  VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                    I +   C      E     V M +    P+ +T   +++G+   GR  E   
Sbjct: 827  KPDHVTYTILIDYHCKTGFLKEAEQFFVDMQKRNLMPNALTYTALLSGYNMAGRRSEMFA 886

Query: 301  VLNDMVAGKFCAPDAVTFTTIIFGLLNVG------------------------------- 329
            + ++M+A K   PD VT++ +I   L  G                               
Sbjct: 887  LFDEMIA-KDIEPDGVTWSVMIDAHLKEGDHVKTLKLVDDMLKKGGNVSKNVCHVLIDPL 945

Query: 330  ----RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 385
                 + E L +L ++  Q G +  + T + ++R   +  +++ A  V   M+    V D
Sbjct: 946  CRKEHVSEVLKVLEKIEEQ-GLNLSLATCSTLVRCFHKAGKMDGAARVLKSMVRFKWVPD 1004

Query: 386  STTYAIVIDGLCESNQLDEAKRFWDDIVW 414
            ST    +I+   +S   + A  F   + W
Sbjct: 1005 STELNDLINVEQDSTDSENAGDFLKQMAW 1033


>gi|302818914|ref|XP_002991129.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
 gi|300141060|gb|EFJ07775.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
          Length = 614

 Score =  253 bits (647), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 153/496 (30%), Positives = 255/496 (51%), Gaps = 9/496 (1%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           R+ +A  +  +M+  G  PNVV+Y +LI G C+  E D A ++F+ M+     P+ +TY+
Sbjct: 94  RLDQALAILHEMRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYN 153

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEED--LSVNNAAFANLVDSLCREGYVNEVFRI 126
            L+ G+ RT  +ERA  L  ++ +R   + D   S N   ++ L+D LC+   V++   +
Sbjct: 154 TLLDGLFRTGKLERAMALFQEMLDRRSHDMDDRCSPNVITYSVLIDGLCKANRVSQAVEL 213

Query: 127 AEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK 186
            E M       +      ++D LC+  +   A  V+  M   G  P+LV+YNS++HGLC+
Sbjct: 214 LESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCR 273

Query: 187 HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRI 246
                 A  L+ +    G  P+  TY  L++GLC    ++ A  +L  M+ K       I
Sbjct: 274 ARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMI 333

Query: 247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV 306
            N+ +  LC      E + +L   +    +PDV+T ++VI G C+  R++EA ++L   V
Sbjct: 334 YNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLL-YV 392

Query: 307 AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 366
             + C PD + ++T+I GL   G++ EA + LY+VM   G    +VTY+ ++ GL +  R
Sbjct: 393 KSRGCPPDVILYSTLIDGLCKAGKVDEAFD-LYEVMAGDGCDADVVTYSTLIDGLCKAGR 451

Query: 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAA 426
           V+EA  +   M+ +G    + TY  +I GLC+ N LDEA    +++   +       Y  
Sbjct: 452 VDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNI 511

Query: 427 MIKGLCRSGKIHEAVHFLYE-----LVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
           +I G+CR  ++  AV  L +     +   G   + + Y+ +IDG CK     EA    +E
Sbjct: 512 LIHGMCRMERVDSAVVLLEQAKARCVAAGGTALDTIAYSSLIDGLCKAGRVAEALDYFQE 571

Query: 482 MRKNGLNPDAVTWRIL 497
           M  NG+ PD +T+ IL
Sbjct: 572 MIDNGVIPDHITYSIL 587



 Score =  237 bits (605), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 155/502 (30%), Positives = 256/502 (50%), Gaps = 37/502 (7%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   R  +A + F  M+  G V + V YT L+ G  +   +D A  +  EMR  G 
Sbjct: 51  IDGLCKAKRSIDALRCFRAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGC 110

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +TY+ L+ G+ +  + +RA     +L+E MK  E  S +   +  L+D L R G +
Sbjct: 111 EPNVVTYNSLIDGLCKNNEPDRAQ----ELFEHMKSVE-CSPSMVTYNTLLDGLFRTGKL 165

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                + ++M   +S        H +D  C                    +P++++Y+ +
Sbjct: 166 ERAMALFQEMLDRRS--------HDMDDRC--------------------SPNVITYSVL 197

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GLCK     +A +LLE     G  P   TY +LV+GLC ES +  A +VL+ ML    
Sbjct: 198 IDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGC 257

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           V      N  L  LC  +  ++ L ++  M    C P+V+T  T+I+G CK+GR+++A  
Sbjct: 258 VPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACA 317

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +L DM+  K   PD + +  +I GL    ++ E++ LL + +   G  P +VTY++V+ G
Sbjct: 318 MLADMI-DKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSG-GIKPDVVTYSSVIYG 375

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L R  R++EA  +   +   G   D   Y+ +IDGLC++ ++DEA   ++ +       D
Sbjct: 376 LCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDAD 435

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              Y+ +I GLC++G++ EA   L  +V  G  P+ + YN +I G C L+   EA +++ 
Sbjct: 436 VVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVE 495

Query: 481 EMRKNGLNPDAVTWRILDKLHG 502
           EM ++   P AVT+ IL  +HG
Sbjct: 496 EMERSNCAPSAVTYNIL--IHG 515



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 129/451 (28%), Positives = 224/451 (49%), Gaps = 47/451 (10%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC  +RV +A +L   MK+RG  P+V++YT L+ G C+  ++  A++V  EM   G 
Sbjct: 198 IDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGC 257

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +PN +TY+ L+ G+ R R V  A  LM  +  R       + N   +  L+D LC+ G V
Sbjct: 258 VPNLVTYNSLLHGLCRARRVSDALALMRDMTCR-----GCTPNVVTYGTLIDGLCKVGRV 312

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +                  AC  + D                 M  +G TP L+ YN +
Sbjct: 313 KD------------------ACAMLAD-----------------MIDKGGTPDLMIYNML 337

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++GLCK      +  LL   +  G  P   TY  ++ GLC  + L++A ++L ++ S+  
Sbjct: 338 INGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGC 397

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                + +  +  LC      E  ++   M    C  DV+T +T+I+G CK GR++EA  
Sbjct: 398 PPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDADVVTYSTLIDGLCKAGRVDEAHL 457

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +L  MV      P  +T+ ++I GL ++  + EA+ L+ + M +   +P  VTYN ++ G
Sbjct: 458 LLARMVRMGT-PPSTMTYNSLIKGLCDLNHLDEAIELVEE-MERSNCAPSAVTYNILIHG 515

Query: 361 LFRLRRVEEAKEVFN-----CMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP 415
           + R+ RV+ A  +       C+   G   D+  Y+ +IDGLC++ ++ EA  ++ +++  
Sbjct: 516 MCRMERVDSAVVLLEQAKARCVAAGGTALDTIAYSSLIDGLCKAGRVAEALDYFQEMIDN 575

Query: 416 SNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE 446
             I D+  Y+ +++GL +S  +HE  H + +
Sbjct: 576 GVIPDHITYSILLEGLKKSKDLHELRHLVLD 606



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 108/394 (27%), Positives = 194/394 (49%), Gaps = 42/394 (10%)

Query: 107 FANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMR 166
           +A L+   CR G +++  R  ++M     V   F C  +ID LC++ R+  A R    M+
Sbjct: 12  YAALLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSIDALRCFRAMQ 71

Query: 167 KRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLE 226
             G+    V Y +++ GL K     +A  +L E    G  P+  TY  L++GLC  ++ +
Sbjct: 72  GSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGLCKNNEPD 131

Query: 227 KARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVI 286
           +A+++ + M S                                    +C P ++T NT++
Sbjct: 132 RAQELFEHMKS-----------------------------------VECSPSMVTYNTLL 156

Query: 287 NGFCKMGRIEEALKVLNDMVAGKF------CAPDAVTFTTIIFGLLNVGRIQEALNLLYQ 340
           +G  + G++E A+ +  +M+  +       C+P+ +T++ +I GL    R+ +A+ LL +
Sbjct: 157 DGLFRTGKLERAMALFQEMLDRRSHDMDDRCSPNVITYSVLIDGLCKANRVSQAVELL-E 215

Query: 341 VMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN 400
            M  RG SP ++TY  ++ GL +  +V  A EV   ML  G V +  TY  ++ GLC + 
Sbjct: 216 SMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRAR 275

Query: 401 QLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYN 460
           ++ +A     D+       +   Y  +I GLC+ G++ +A   L +++D G TP+++ YN
Sbjct: 276 RVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYN 335

Query: 461 VVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
           ++I+G CK     E+  +LR     G+ PD VT+
Sbjct: 336 MLINGLCKADQVDESIALLRRAVSGGIKPDVVTY 369



 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 123/230 (53%), Gaps = 9/230 (3%)

Query: 275 CQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEA 334
           CQPDV T   ++ GFC+ G I++A +  ++M + K   P+    + +I GL    R  +A
Sbjct: 5   CQPDVYTYAALLRGFCRGGEIDQAQRCFDEMRS-KNLVPNVFLCSILIDGLCKAKRSIDA 63

Query: 335 LNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVID 394
           L   ++ M   G     V Y A+L GL++ +R+++A  + + M   G   +  TY  +ID
Sbjct: 64  LR-CFRAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLID 122

Query: 395 GLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELV------ 448
           GLC++N+ D A+  ++ +           Y  ++ GL R+GK+  A+    E++      
Sbjct: 123 GLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHD 182

Query: 449 -DSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            D   +PN++ Y+V+IDG CK +   +A ++L  M+  G +PD +T+ IL
Sbjct: 183 MDDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTIL 232


>gi|302774715|ref|XP_002970774.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
 gi|300161485|gb|EFJ28100.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
          Length = 497

 Score =  252 bits (643), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 150/482 (31%), Positives = 250/482 (51%), Gaps = 16/482 (3%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M+  G  PNVV+Y +LI G C+  E D A ++F+ M+     P+ +TY+ L+ G+ RT  
Sbjct: 1   MRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGK 60

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVN---EVFRIAEDMPQGKSV 136
           +ERA  L  ++ +R       S +  +F  LV  LCR G +    E FR  +D      +
Sbjct: 61  LERAMALFQEMLDRR------SHDVISFNILVTGLCRAGKIETALEFFRKMDDRCSPNVI 114

Query: 137 NEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQL 196
                   +ID LC++ R   A  ++  M+ RG +P +++Y  +V GLCK      A+++
Sbjct: 115 TYSV----LIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEV 170

Query: 197 LEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCL 256
           L E +  G +P+  TY  L+ GLC    +  A  +++ M  +            +  LC 
Sbjct: 171 LREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCK 230

Query: 257 IKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAV 316
           +    +   +L  M+     PD++  N +ING CK  +++E++ +L   V+G    PD V
Sbjct: 231 VGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGI-KPDVV 289

Query: 317 TFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNC 376
           T++++I+GL    R+ EA  LL  V   RG  P ++ Y+ ++ GL +  +V+EA +++  
Sbjct: 290 TYSSVIYGLCRSNRLDEACRLLLYV-KSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEV 348

Query: 377 MLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGK 436
           M G G  AD  TY+ +IDGLC++ ++DEA      +V          Y ++IKGLC    
Sbjct: 349 MTGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNH 408

Query: 437 IHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLS-MKREAYQILREMRKNGLNPDAVTWR 495
           + EA+  + E+  S   P+ V YN++I G C++  +   A    +EM  NG+ PD +T+ 
Sbjct: 409 LDEAIELVEEMERSNCAPSAVTYNILIHGMCRMERVDSAALDYFQEMIDNGVIPDHITYS 468

Query: 496 IL 497
           IL
Sbjct: 469 IL 470



 Score =  222 bits (566), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 142/448 (31%), Positives = 240/448 (53%), Gaps = 11/448 (2%)

Query: 55  MRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSL 114
           MR  G  PN +TY+ L+ G+ +  + +RA     +L+E MK  E  S +   +  L+D L
Sbjct: 1   MRDHGCEPNVVTYNSLIDGLCKNNEPDRAQ----ELFEHMKSVE-CSPSMVTYNTLLDGL 55

Query: 115 CREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSL 174
            R G +     + ++M   +S ++  +   ++  LCR+G+   A      M  R  +P++
Sbjct: 56  FRTGKLERAMALFQEMLDRRS-HDVISFNILVTGLCRAGKIETALEFFRKMDDR-CSPNV 113

Query: 175 VSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQF 234
           ++Y+ ++ GLCK     +A +LLE     G  P   TY +LV+GLC ES +  A +VL+ 
Sbjct: 114 ITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLRE 173

Query: 235 MLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGR 294
           ML    V      N  L  LC  +  ++ L ++  M    C P+V+T  T+I+G CK+GR
Sbjct: 174 MLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGR 233

Query: 295 IEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTY 354
           +++A  +L DM+  K   PD + +  +I GL    ++ E++ LL + +   G  P +VTY
Sbjct: 234 VKDACAMLADMI-DKGGTPDLMIYNMLINGLCKADQVDESIALLRRAV-SGGIKPDVVTY 291

Query: 355 NAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVW 414
           ++V+ GL R  R++EA  +   +   G   D   Y+ +IDGLC++ ++DEA   ++ +  
Sbjct: 292 SSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMTG 351

Query: 415 PSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKRE 474
                D   Y+ +I GLC++G++ EA   L  +V  G  P+ + YN +I G C L+   E
Sbjct: 352 DGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDE 411

Query: 475 AYQILREMRKNGLNPDAVTWRILDKLHG 502
           A +++ EM ++   P AVT+ IL  +HG
Sbjct: 412 AIELVEEMERSNCAPSAVTYNIL--IHG 437



 Score =  221 bits (562), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 140/470 (29%), Positives = 243/470 (51%), Gaps = 18/470 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEM----R 56
           +D LC  +    A +LF  MKS    P++V+Y TL+ G  RTG+++ A  +F EM     
Sbjct: 17  IDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRS 76

Query: 57  HCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCR 116
           H     + +++++LV G+ R   +E A     K+ +R       S N   ++ L+D LC+
Sbjct: 77  H-----DVISFNILVTGLCRAGKIETALEFFRKMDDR------CSPNVITYSVLIDGLCK 125

Query: 117 EGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVS 176
              V++   + E M       +      ++D LC+  +   A  V+  M   G  P+LV+
Sbjct: 126 ANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVT 185

Query: 177 YNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFML 236
           YNS++HGLC+      A  L+ +    G  P+  TY  L++GLC    ++ A  +L  M+
Sbjct: 186 YNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMI 245

Query: 237 SKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIE 296
            K       I N+ +  LC      E + +L   +    +PDV+T ++VI G C+  R++
Sbjct: 246 DKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLD 305

Query: 297 EALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
           EA ++L   V  + C PD + ++T+I GL   G++ EA + LY+VM   G    +VTY+ 
Sbjct: 306 EACRLLL-YVKSRGCPPDVILYSTLIDGLCKAGKVDEAFD-LYEVMTGDGCDADVVTYST 363

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416
           ++ GL +  RV+EA  +   M+ +G    + TY  +I GLC+ N LDEA    +++   +
Sbjct: 364 LIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSN 423

Query: 417 NIHDNYVYAAMIKGLCRSGKIHE-AVHFLYELVDSGVTPNIVCYNVVIDG 465
                  Y  +I G+CR  ++   A+ +  E++D+GV P+ + Y+++++G
Sbjct: 424 CAPSAVTYNILIHGMCRMERVDSAALDYFQEMIDNGVIPDHITYSILLEG 473



 Score =  201 bits (512), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 143/450 (31%), Positives = 234/450 (52%), Gaps = 23/450 (5%)

Query: 6   GLSRVGE---AHKLFFDM-KSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMR-HCGV 60
           GL R G+   A  LF +M   R H  +V+S+  L+ G CR G+++ A + F +M   C  
Sbjct: 54  GLFRTGKLERAMALFQEMLDRRSH--DVISFNILVTGLCRAGKIETALEFFRKMDDRCS- 110

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +TYSVL+ G+ +   V +A     +L E MK     S +   +  LVD LC+E  V
Sbjct: 111 -PNVITYSVLIDGLCKANRVSQA----VELLESMKAR-GCSPDVITYTILVDGLCKESKV 164

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
              + +  +M     V        ++  LCR+ R   A  ++  M  RG TP++V+Y ++
Sbjct: 165 AAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTL 224

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS--- 237
           + GLCK G    A  +L + I  G  P    Y +L+ GLC    ++++  +L+  +S   
Sbjct: 225 IDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGI 284

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
           K DV  T    IY   LC      E   +L+++    C PDVI  +T+I+G CK G+++E
Sbjct: 285 KPDV-VTYSSVIY--GLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDE 341

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           A   L +++ G  C  D VT++T+I GL   GR+ EA +LL   M + G  P  +TYN++
Sbjct: 342 AFD-LYEVMTGDGCDADVVTYSTLIDGLCKAGRVDEA-HLLLARMVRMGTPPSTMTYNSL 399

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK-RFWDDIVWPS 416
           ++GL  L  ++EA E+   M        + TY I+I G+C   ++D A   ++ +++   
Sbjct: 400 IKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRMERVDSAALDYFQEMIDNG 459

Query: 417 NIHDNYVYAAMIKGLCRSGKIHEAVHFLYE 446
            I D+  Y+ +++GL +S  +HE  H + +
Sbjct: 460 VIPDHITYSILLEGLKKSKDLHELRHLVLD 489



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 122/411 (29%), Positives = 207/411 (50%), Gaps = 13/411 (3%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   ++  A + F  M  R   PNV++Y+ LI G C+   +  A ++ + M+  G  P+
Sbjct: 89  LCRAGKIETALEFFRKMDDRCS-PNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPD 147

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSV--NNAAFANLVDSLCREGYVN 121
            +TY++LV G+ +   V  A       WE ++E  D     N   + +L+  LCR   V+
Sbjct: 148 VITYTILVDGLCKESKVAAA-------WEVLREMLDAGCVPNLVTYNSLLHGLCRARRVS 200

Query: 122 EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
           +   +  DM            G +ID LC+ GR   A  ++  M  +G TP L+ YN ++
Sbjct: 201 DALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLI 260

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
           +GLCK      +  LL   +  G  P   TY  ++ GLC  + L++A ++L ++ S+   
Sbjct: 261 NGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCP 320

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
               + +  +  LC      E  ++   M    C  DV+T +T+I+G CK GR++EA  +
Sbjct: 321 PDVILYSTLIDGLCKAGKVDEAFDLYEVMTGDGCDADVVTYSTLIDGLCKAGRVDEAHLL 380

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
           L  MV      P  +T+ ++I GL ++  + EA+ L+ + M +   +P  VTYN ++ G+
Sbjct: 381 LARMVRMGT-PPSTMTYNSLIKGLCDLNHLDEAIELVEE-MERSNCAPSAVTYNILIHGM 438

Query: 362 FRLRRVEEAK-EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDD 411
            R+ RV+ A  + F  M+  GV+ D  TY+I+++GL +S  L E +    D
Sbjct: 439 CRMERVDSAALDYFQEMIDNGVIPDHITYSILLEGLKKSKDLHELRHLVLD 489



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 108/383 (28%), Positives = 180/383 (46%), Gaps = 42/383 (10%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC  +RV +A +L   MK+RG  P+V++YT L+ G C+  ++  A++V  EM   G 
Sbjct: 120 IDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGC 179

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +PN +TY+ L+ G+ R R V  A  LM  +  R       + N   +  L+D LC+ G V
Sbjct: 180 VPNLVTYNSLLHGLCRARRVSDALALMRDMTCR-----GCTPNVVTYGTLIDGLCKVGRV 234

Query: 121 NEVFRIAEDM------P-------------QGKSVNEEFAC----------------GHM 145
            +   +  DM      P             +   V+E  A                   +
Sbjct: 235 KDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSV 294

Query: 146 IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY 205
           I  LCRS R   A R++  ++ RG  P ++ Y++++ GLCK G    A+ L E     G 
Sbjct: 295 IYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMTGDGC 354

Query: 206 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 265
                TY  L++GLC    +++A  +L  M+       T   N  ++ LC + +  E + 
Sbjct: 355 DADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIE 414

Query: 266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA-LKVLNDMVAGKFCAPDAVTFTTIIFG 324
           ++  M ++ C P  +T N +I+G C+M R++ A L    +M+      PD +T++ ++ G
Sbjct: 415 LVEEMERSNCAPSAVTYNILIHGMCRMERVDSAALDYFQEMIDNGV-IPDHITYSILLEG 473

Query: 325 LLNVGRIQEALNLLYQVMPQRGY 347
           L     + E  +L+   M Q GY
Sbjct: 474 LKKSKDLHELRHLVLDQMVQLGY 496


>gi|302758218|ref|XP_002962532.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
 gi|300169393|gb|EFJ35995.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
          Length = 1031

 Score =  249 bits (637), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 151/514 (29%), Positives = 260/514 (50%), Gaps = 43/514 (8%)

Query: 16  LFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVL 75
           +F  M   G+ P+  +Y  +I   C+  ++D A+ + D+ +  G  P    Y++L R   
Sbjct: 147 MFERMLDAGYAPDSYTYHLVIKSLCQMNQIDKAFTMLDKAKVRGFKPEVSVYTILTRAFC 206

Query: 76  RTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKS 135
           +T  ++ A     +++  +      S +  A+  ++   CR+   +      ++M + K 
Sbjct: 207 KTGRLKDA----LEIFRNIP-----SPDAIAYNAIIHGHCRKNDCDGALEFLKEMNERKV 257

Query: 136 VNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQ 195
             + F    +ID LC++ +   AS +++ M  RG+TP  V++NSI+ GLCK G   RA+ 
Sbjct: 258 APDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHS 317

Query: 196 LLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALC 255
           LL    +    PS  TY  L+ GLC + ++++A+ ++   +S   V      +I    LC
Sbjct: 318 LLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSILADGLC 377

Query: 256 LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA 315
                 E   ++  M    C P+++T NT+I+G CK  + E+A ++L  +V+  F  PD 
Sbjct: 378 KRGRIDEAFELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGF-VPDV 436

Query: 316 VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN 375
           VT+T I+ GL   GR+ +AL ++ + M +RG +P ++TY A++ GL R  RV+EA  +F 
Sbjct: 437 VTYTIIVDGLCKEGRLDKALKMV-EGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFK 495

Query: 376 CMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH------DNY------- 422
            M+     AD+  Y  +++G C+S++  EA++  D I     I       D Y       
Sbjct: 496 EMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRGTPYIDVYNALMDGYCKEGRLD 555

Query: 423 -------------------VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463
                               Y  ++ GLC+ GK+ EA  FL  +  +G  P++V YN++I
Sbjct: 556 EIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIII 615

Query: 464 DGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           DG  K S  +EA Q+L +M + G+ PDAVT+  L
Sbjct: 616 DGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTL 649



 Score =  235 bits (600), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 144/490 (29%), Positives = 249/490 (50%), Gaps = 12/490 (2%)

Query: 13  AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVR 72
           A +   +M  R   P+V +Y  LI G C+  + D A ++  EM   GV P+++T++ ++ 
Sbjct: 245 ALEFLKEMNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMD 304

Query: 73  GVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQ 132
           G+ +    ERA+ L+  + ER     +   +   +  L+  LC++  V+    + ++   
Sbjct: 305 GLCKAGKFERAHSLLAVMAER-----NCRPSCCTYNTLISGLCKQQNVDRAKDLVDEFVS 359

Query: 133 GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMR 192
              V +      + D LC+ GR   A  +V  M  +G TP+LV+YN+++ GLCK     +
Sbjct: 360 SGFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEK 419

Query: 193 AYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLR 252
           AY+LLE  +  G++P   TY ++V+GLC E  L+KA K+++ ML +            + 
Sbjct: 420 AYELLESLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALME 479

Query: 253 ALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCA 312
            LC      E  ++   M+   C  D +   +++NG+CK  R +EA KV+ D + G    
Sbjct: 480 GLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVV-DGIRG---T 535

Query: 313 PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKE 372
           P    +  ++ G    GR+ E  N+ ++ M  RG  P I TYN V+ GL +  +V+EA  
Sbjct: 536 PYIDVYNALMDGYCKEGRLDEIPNV-FEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFP 594

Query: 373 VFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLC 432
               M   G V D  +Y I+IDGL ++++  EA++  D ++      D   Y  ++   C
Sbjct: 595 FLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFC 654

Query: 433 RSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAV 492
           +  +  +AV  L  ++ +GV P+ V YN +I G  + +   +AY+++ EM +NG    A 
Sbjct: 655 KEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSAC 714

Query: 493 TW--RILDKL 500
           T    I+D+L
Sbjct: 715 TTYNTIIDRL 724



 Score =  225 bits (573), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 135/503 (26%), Positives = 255/503 (50%), Gaps = 14/503 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC  S+  +A ++  +M  RG  P+ V++ +++ G C+ G+ + A+ +   M     
Sbjct: 268 IDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNC 327

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+  TY+ L+ G+ + ++V+RA  L+ +             +   ++ L D LC+ G +
Sbjct: 328 RPSCCTYNTLISGLCKQQNVDRAKDLVDEFV-----SSGFVPDVVTYSILADGLCKRGRI 382

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E F + ++M              +ID LC++ +   A  ++  +   G  P +V+Y  I
Sbjct: 383 DEAFELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPDVVTYTII 442

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           V GLCK G   +A +++E  ++ G  PS  TY  L+EGLC    +++A  + + M+S KD
Sbjct: 443 VDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVS-KD 501

Query: 241 VDRTRICNIYL-RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                +  + L    C      E   V+  +  T   P +   N +++G+CK GR++E  
Sbjct: 502 CTADALAYVSLVNGYCKSSRTKEAQKVVDGIRGT---PYIDVYNALMDGYCKEGRLDEIP 558

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
            V  DM A + C P+  T+  ++ GL   G++ EA   L + M   G  P +V+YN ++ 
Sbjct: 559 NVFEDM-ACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFL-ESMHSAGCVPDVVSYNIIID 616

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
           GLF+  + +EA++V + M+  G+  D+ TY  ++   C+  + D+A     +++      
Sbjct: 617 GLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDP 676

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG-VTPNIVCYNVVIDGACKLSMKREAYQI 478
           DN  Y  +I GL ++ ++ +A   ++E++ +G V      YN +ID  CK    ++A  +
Sbjct: 677 DNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLL 736

Query: 479 LREMRKNGLNPDAVTWRI-LDKL 500
           +  M  +G+  + VT+ I +D+L
Sbjct: 737 MDHMTGHGVEANTVTYNIFIDRL 759



 Score =  222 bits (565), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 146/532 (27%), Positives = 259/532 (48%), Gaps = 48/532 (9%)

Query: 2   DQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVL 61
           D LC   R+ EA +L  +M  +G  PN+V+Y TLI G C+  + + AY++ + +   G +
Sbjct: 374 DGLCKRGRIDEAFELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFV 433

Query: 62  PNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVN 121
           P+ +TY+++V G+ +   +++A     K+ E M  +   + +   +  L++ LCR G V+
Sbjct: 434 PDVVTYTIIVDGLCKEGRLDKA----LKMVEGML-KRGCTPSVITYTALMEGLCRTGRVD 488

Query: 122 EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
           E   I ++M       +  A   +++  C+S R   A +VV  +R    TP +  YN+++
Sbjct: 489 EAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRG---TPYIDVYNALM 545

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
            G CK G       + E+    G +P+  TY ++++GLC    +++A   L+ M S   V
Sbjct: 546 DGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCV 605

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
                 NI +  L     P E   VL  M+Q    PD +T NT++  FCK  R ++A+ +
Sbjct: 606 PDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGI 665

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
           L +M+      PD VT+ T+I GL    R+ +A  L+++++          TYN ++  L
Sbjct: 666 LKNMIKAGV-DPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRL 724

Query: 362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
            +   +++A  + + M G GV A++ TY I ID LC+  +LDEA     ++     + D 
Sbjct: 725 CKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEM---DTLRDE 781

Query: 422 YVYAAMIKGLC------------------------------------RSGKIHEAVHFLY 445
             Y  +I GLC                                    ++ ++ EA+  L 
Sbjct: 782 VSYTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLG 841

Query: 446 ELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            +V  G +P+++ YN+VI   CKL    +A+++  EM   G+   +V++ +L
Sbjct: 842 LMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVL 893



 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 99/330 (30%), Positives = 160/330 (48%), Gaps = 6/330 (1%)

Query: 168 RGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEK 227
           RG   S  + N  +  L ++G   R   + E  +  GY P  +TY ++++ LC  + ++K
Sbjct: 119 RGFKHSTFTRNCFLQTLLENGSSDRIPAMFERMLDAGYAPDSYTYHLVIKSLCQMNQIDK 178

Query: 228 ARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVIN 287
           A  +L     +       +  I  RA C      + L +     +    PD I  N +I+
Sbjct: 179 AFTMLDKAKVRGFKPEVSVYTILTRAFCKTGRLKDALEIF----RNIPSPDAIAYNAIIH 234

Query: 288 GFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGY 347
           G C+    + AL+ L +M   K  APD  T+  +I GL    +  +A  +L++ M  RG 
Sbjct: 235 GHCRKNDCDGALEFLKEMNERKV-APDVFTYNILIDGLCKASKTDKASEMLHE-MVDRGV 292

Query: 348 SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKR 407
           +P  VT+N+++ GL +  + E A  +   M          TY  +I GLC+   +D AK 
Sbjct: 293 TPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKD 352

Query: 408 FWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGAC 467
             D+ V    + D   Y+ +  GLC+ G+I EA   + E+   G TPN+V YN +IDG C
Sbjct: 353 LVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGKGCTPNLVTYNTLIDGLC 412

Query: 468 KLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           K S   +AY++L  +  +G  PD VT+ I+
Sbjct: 413 KASKTEKAYELLESLVSSGFVPDVVTYTII 442


>gi|152717466|dbj|BAF73724.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score =  248 bits (634), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 149/503 (29%), Positives = 258/503 (51%), Gaps = 17/503 (3%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   RV EA  LF  M      PNVV++TTL++G CR G +  A  + D M   G+ P 
Sbjct: 159 LCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPT 218

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY  +V G+ +  D   A      L  +M+E   +  N   ++ ++DSLC++G  ++ 
Sbjct: 219 QITYGTIVDGMCKKGDTVSA----LNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDA 274

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             +  +M +     + F    MI   C SGR   A +++  M +R ++P +V+YN++++ 
Sbjct: 275 QNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINA 334

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
             K G    A +L +E +  G +P+  TY  +++G C ++ L+ A  +   M +K     
Sbjct: 335 FVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPN 394

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               N  +   C  K   + + +L  M +T    D  T NT+I+GF  +G +  AL +L 
Sbjct: 395 LITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQ 454

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVM-----------PQRGYSPGIV 352
           +M++   C PD VT  T++ GL + G++++AL + ++VM           P  G  P + 
Sbjct: 455 EMISSGLC-PDIVTCDTLLDGLCDNGKLKDALEM-FKVMQKSKKDLDASHPFNGVEPDVQ 512

Query: 353 TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI 412
           TYN ++ GL    +  EA+E++  M   G+V D+ TY+ +IDGLC+ ++LDEA + +D +
Sbjct: 513 TYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSM 572

Query: 413 VWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMK 472
              S   +   +  +I G C++G++ + +    E+   G+  N + Y  +I G  K+   
Sbjct: 573 GSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNI 632

Query: 473 REAYQILREMRKNGLNPDAVTWR 495
             A  I +EM  +G+ PD +T R
Sbjct: 633 NGALDIFQEMISSGVYPDTITIR 655



 Score =  198 bits (503), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 134/506 (26%), Positives = 227/506 (44%), Gaps = 54/506 (10%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C  S++  A   F  +   G  P+VV++ TL+HG C    +  A  +F +M      PN
Sbjct: 124 FCSCSKLPFALSTFGKLTKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPN 183

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +T++ L+ G+ R   +  A  L+    +RM E+  L      +  +VD +C++G     
Sbjct: 184 VVTFTTLMNGLCREGRIVEAVALL----DRMMED-GLQPTQITYGTIVDGMCKKGDTVSA 238

Query: 124 FRIAEDMPQGKSVNEEFAC-GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
             +   M +   +         +IDSLC+ GR+  A  +   M+++G+ P L +YNS++ 
Sbjct: 239 LNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIV 298

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           G C  G    A QLL+E ++    P   TY  L+     E    +A ++   ML +  + 
Sbjct: 299 GFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGII- 357

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
                                             P+ IT +++I+GFCK  R++ A  + 
Sbjct: 358 ----------------------------------PNTITYSSMIDGFCKQNRLDAAEHMF 383

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
             ++A K C+P+ +TF T+I G     RI + + LL++ M + G      TYN ++ G +
Sbjct: 384 Y-LMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHE-MTETGLVADTTTYNTLIHGFY 441

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD---------DIV 413
            +  +  A ++   M+  G+  D  T   ++DGLC++ +L +A   +          D  
Sbjct: 442 LVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDAS 501

Query: 414 WPSN--IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSM 471
            P N    D   Y  +I GL   GK  EA     E+   G+ P+ + Y+ +IDG CK S 
Sbjct: 502 HPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSR 561

Query: 472 KREAYQILREMRKNGLNPDAVTWRIL 497
             EA Q+   M     +P+ VT+  L
Sbjct: 562 LDEATQMFDSMGSKSFSPNVVTFTTL 587



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 116/475 (24%), Positives = 230/475 (48%), Gaps = 19/475 (4%)

Query: 35  LIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERM 94
           L  G+     ++ A  +F +M     LP+ + +  L+  V+R   +ER + L+  L+++M
Sbjct: 50  LQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVR---MERPD-LVISLYQKM 105

Query: 95  KEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGR 154
            E + +  +  +F  L+   C    +         + +     +      ++  LC   R
Sbjct: 106 -ERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFNTLLHGLCVEDR 164

Query: 155 NHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKV 214
              A  + + M +    P++V++ ++++GLC+ G  + A  LL+  ++ G  P++ TY  
Sbjct: 165 VSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGT 224

Query: 215 LVEGLCGESDLEKARKVLQFMLSKKD-VDRTRICNIYLRALCLIKNPTELLNVLVFMLQT 273
           +V+G+C + D   A  +L+ M      +    I +  + +LC     ++  N+   M + 
Sbjct: 225 IVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEK 284

Query: 274 QCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQE 333
              PD+ T N++I GFC  GR  +A ++L +M+  K  +PD VT+  +I   +  G+  E
Sbjct: 285 GIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKI-SPDVVTYNALINAFVKEGKFFE 343

Query: 334 ALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVI 393
           A  L  +++P RG  P  +TY++++ G  +  R++ A+ +F  M   G   +  T+  +I
Sbjct: 344 AEELYDEMLP-RGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLI 402

Query: 394 DGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVT 453
           DG C + ++D+      ++     + D   Y  +I G    G ++ A+  L E++ SG+ 
Sbjct: 403 DGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLC 462

Query: 454 PNIVCYNVVIDGACKLSMKREAYQILREMRK-----------NGLNPDAVTWRIL 497
           P+IV  + ++DG C     ++A ++ + M+K           NG+ PD  T+ IL
Sbjct: 463 PDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNIL 517



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 87/338 (25%), Positives = 153/338 (45%), Gaps = 3/338 (0%)

Query: 165 MRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESD 224
           M ++ +   + S+  ++   C       A     +  + G  P   T+  L+ GLC E  
Sbjct: 105 MERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFNTLLHGLCVEDR 164

Query: 225 LEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNT 284
           + +A  +   M               +  LC      E + +L  M++   QP  IT  T
Sbjct: 165 VSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGT 224

Query: 285 VINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ 344
           +++G CK G    AL +L  M       P+ V ++ II  L   GR  +A NL  + M +
Sbjct: 225 IVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTE-MQE 283

Query: 345 RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 404
           +G  P + TYN+++ G     R  +A+++   ML   +  D  TY  +I+   +  +  E
Sbjct: 284 KGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFE 343

Query: 405 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
           A+  +D+++    I +   Y++MI G C+  ++  A H  Y +   G +PN++ +N +ID
Sbjct: 344 AEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLID 403

Query: 465 GACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
           G C      +  ++L EM + GL  D  T+  L  +HG
Sbjct: 404 GYCGAKRIDDGMELLHEMTETGLVADTTTYNTL--IHG 439



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 86/304 (28%), Positives = 147/304 (48%), Gaps = 2/304 (0%)

Query: 210 HTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVF 269
           +++ +L++  C  S L  A      +            N  L  LC+    +E LN+   
Sbjct: 115 YSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQ 174

Query: 270 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG 329
           M +T C+P+V+T  T++NG C+ GRI EA+ +L+ M+      P  +T+ TI+ G+   G
Sbjct: 175 MFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGL-QPTQITYGTIVDGMCKKG 233

Query: 330 RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTY 389
               ALNLL ++       P +V Y+A++  L +  R  +A+ +F  M   G+  D  TY
Sbjct: 234 DTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTY 293

Query: 390 AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449
             +I G C S +  +A++   +++      D   Y A+I    + GK  EA     E++ 
Sbjct: 294 NSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLP 353

Query: 450 SGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL-DKLHGNRGNDF 508
            G+ PN + Y+ +IDG CK +    A  +   M   G +P+ +T+  L D   G +  D 
Sbjct: 354 RGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDD 413

Query: 509 GLRI 512
           G+ +
Sbjct: 414 GMEL 417



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/275 (23%), Positives = 117/275 (42%), Gaps = 43/275 (15%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  CG  R+ +  +L  +M   G V +  +Y TLIHG+   G+++ A  +  EM   G+
Sbjct: 402 IDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGL 461

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLS-------VNNAAFANLVDS 113
            P+ +T   L+ G+     ++ A + MFK+ ++ K++ D S        +   +  L+  
Sbjct: 462 CPDIVTCDTLLDGLCDNGKLKDA-LEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISG 520

Query: 114 LCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC----------------------- 150
           L  EG   E   + E+MP    V +      MID LC                       
Sbjct: 521 LINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPN 580

Query: 151 ------------RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLE 198
                       ++GR      +   M +RG+  + ++Y +++ G  K G    A  + +
Sbjct: 581 VVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQ 640

Query: 199 EGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQ 233
           E I  G  P   T + ++ GL  + +L++A  +L+
Sbjct: 641 EMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLE 675


>gi|30840327|emb|CAD61286.1| fertility restorer homologue [Raphanus sativus]
 gi|134302843|gb|ABO70665.1| restorer-of-fertility [Raphanus sativus]
 gi|157931526|gb|ABW04887.1| PPR [Raphanus sativus]
 gi|194295008|gb|ABO70666.2| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score =  248 bits (634), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 149/503 (29%), Positives = 258/503 (51%), Gaps = 17/503 (3%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   RV EA  LF  M      PNVV++TTL++G CR G +  A  + D M   G+ P 
Sbjct: 159 LCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPT 218

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY  +V G+ +  D   A      L  +M+E   +  N   ++ ++DSLC++G  ++ 
Sbjct: 219 QITYGTIVDGMCKKGDTVSA----LNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDA 274

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             +  +M +     + F    MI   C SGR   A +++  M +R ++P +V+YN++++ 
Sbjct: 275 QNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINA 334

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
             K G    A +L +E +  G +P+  TY  +++G C ++ L+ A  +   M +K     
Sbjct: 335 FVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPN 394

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               N  +   C  K   + + +L  M +T    D  T NT+I+GF  +G +  AL +L 
Sbjct: 395 LITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQ 454

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVM-----------PQRGYSPGIV 352
           +M++   C PD VT  T++ GL + G++++AL + ++VM           P  G  P + 
Sbjct: 455 EMISSGLC-PDIVTCDTLLDGLCDNGKLKDALEM-FKVMQKSKKDLDASHPFNGVEPDVQ 512

Query: 353 TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI 412
           TYN ++ GL    +  EA+E++  M   G+V D+ TY+ +IDGLC+ ++LDEA + +D +
Sbjct: 513 TYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSM 572

Query: 413 VWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMK 472
              S   +   +  +I G C++G++ + +    E+   G+  N + Y  +I G  K+   
Sbjct: 573 GSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNI 632

Query: 473 REAYQILREMRKNGLNPDAVTWR 495
             A  I +EM  +G+ PD +T R
Sbjct: 633 NGALDIFQEMISSGVYPDTITIR 655



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 134/506 (26%), Positives = 227/506 (44%), Gaps = 54/506 (10%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C  S++  A   F  +   G  P+VV++ TL+HG C    +  A  +F +M      PN
Sbjct: 124 FCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPN 183

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +T++ L+ G+ R   +  A  L+    +RM E+  L      +  +VD +C++G     
Sbjct: 184 VVTFTTLMNGLCREGRIVEAVALL----DRMMED-GLQPTQITYGTIVDGMCKKGDTVSA 238

Query: 124 FRIAEDMPQGKSVNEEFAC-GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
             +   M +   +         +IDSLC+ GR+  A  +   M+++G+ P L +YNS++ 
Sbjct: 239 LNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIV 298

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           G C  G    A QLL+E ++    P   TY  L+     E    +A ++   ML +  + 
Sbjct: 299 GFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGII- 357

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
                                             P+ IT +++I+GFCK  R++ A  + 
Sbjct: 358 ----------------------------------PNTITYSSMIDGFCKQNRLDAAEHMF 383

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
             ++A K C+P+ +TF T+I G     RI + + LL++ M + G      TYN ++ G +
Sbjct: 384 Y-LMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHE-MTETGLVADTTTYNTLIHGFY 441

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD---------DIV 413
            +  +  A ++   M+  G+  D  T   ++DGLC++ +L +A   +          D  
Sbjct: 442 LVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDAS 501

Query: 414 WPSN--IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSM 471
            P N    D   Y  +I GL   GK  EA     E+   G+ P+ + Y+ +IDG CK S 
Sbjct: 502 HPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSR 561

Query: 472 KREAYQILREMRKNGLNPDAVTWRIL 497
             EA Q+   M     +P+ VT+  L
Sbjct: 562 LDEATQMFDSMGSKSFSPNVVTFTTL 587



 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 116/475 (24%), Positives = 230/475 (48%), Gaps = 19/475 (4%)

Query: 35  LIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERM 94
           L  G+     ++ A  +F +M     LP+ + +  L+  V+R   +ER + L+  L+++M
Sbjct: 50  LQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVR---MERPD-LVISLYQKM 105

Query: 95  KEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGR 154
            E + +  +  +F  L+   C    +         + +     +      ++  LC   R
Sbjct: 106 -ERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDR 164

Query: 155 NHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKV 214
              A  + + M +    P++V++ ++++GLC+ G  + A  LL+  ++ G  P++ TY  
Sbjct: 165 VSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGT 224

Query: 215 LVEGLCGESDLEKARKVLQFMLSKKD-VDRTRICNIYLRALCLIKNPTELLNVLVFMLQT 273
           +V+G+C + D   A  +L+ M      +    I +  + +LC     ++  N+   M + 
Sbjct: 225 IVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEK 284

Query: 274 QCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQE 333
              PD+ T N++I GFC  GR  +A ++L +M+  K  +PD VT+  +I   +  G+  E
Sbjct: 285 GIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKI-SPDVVTYNALINAFVKEGKFFE 343

Query: 334 ALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVI 393
           A  L  +++P RG  P  +TY++++ G  +  R++ A+ +F  M   G   +  T+  +I
Sbjct: 344 AEELYDEMLP-RGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLI 402

Query: 394 DGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVT 453
           DG C + ++D+      ++     + D   Y  +I G    G ++ A+  L E++ SG+ 
Sbjct: 403 DGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLC 462

Query: 454 PNIVCYNVVIDGACKLSMKREAYQILREMRK-----------NGLNPDAVTWRIL 497
           P+IV  + ++DG C     ++A ++ + M+K           NG+ PD  T+ IL
Sbjct: 463 PDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNIL 517



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 87/338 (25%), Positives = 153/338 (45%), Gaps = 3/338 (0%)

Query: 165 MRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESD 224
           M ++ +   + S+  ++   C       A     +  + G  P   T+  L+ GLC E  
Sbjct: 105 MERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDR 164

Query: 225 LEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNT 284
           + +A  +   M               +  LC      E + +L  M++   QP  IT  T
Sbjct: 165 VSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGT 224

Query: 285 VINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ 344
           +++G CK G    AL +L  M       P+ V ++ II  L   GR  +A NL  + M +
Sbjct: 225 IVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTE-MQE 283

Query: 345 RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 404
           +G  P + TYN+++ G     R  +A+++   ML   +  D  TY  +I+   +  +  E
Sbjct: 284 KGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFE 343

Query: 405 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
           A+  +D+++    I +   Y++MI G C+  ++  A H  Y +   G +PN++ +N +ID
Sbjct: 344 AEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLID 403

Query: 465 GACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
           G C      +  ++L EM + GL  D  T+  L  +HG
Sbjct: 404 GYCGAKRIDDGMELLHEMTETGLVADTTTYNTL--IHG 439



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 81/266 (30%), Positives = 135/266 (50%), Gaps = 2/266 (0%)

Query: 248 NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA 307
           N  L  LC+    +E LN+   M +T C+P+V+T  T++NG C+ GRI EA+ +L+ M+ 
Sbjct: 153 NTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMME 212

Query: 308 GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRV 367
                P  +T+ TI+ G+   G    ALNLL ++       P +V Y+A++  L +  R 
Sbjct: 213 DGL-QPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRH 271

Query: 368 EEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAM 427
            +A+ +F  M   G+  D  TY  +I G C S +  +A++   +++      D   Y A+
Sbjct: 272 SDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNAL 331

Query: 428 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
           I    + GK  EA     E++  G+ PN + Y+ +IDG CK +    A  +   M   G 
Sbjct: 332 INAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGC 391

Query: 488 NPDAVTWRIL-DKLHGNRGNDFGLRI 512
           +P+ +T+  L D   G +  D G+ +
Sbjct: 392 SPNLITFNTLIDGYCGAKRIDDGMEL 417



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/275 (23%), Positives = 117/275 (42%), Gaps = 43/275 (15%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  CG  R+ +  +L  +M   G V +  +Y TLIHG+   G+++ A  +  EM   G+
Sbjct: 402 IDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGL 461

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLS-------VNNAAFANLVDS 113
            P+ +T   L+ G+     ++ A + MFK+ ++ K++ D S        +   +  L+  
Sbjct: 462 CPDIVTCDTLLDGLCDNGKLKDA-LEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISG 520

Query: 114 LCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC----------------------- 150
           L  EG   E   + E+MP    V +      MID LC                       
Sbjct: 521 LINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPN 580

Query: 151 ------------RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLE 198
                       ++GR      +   M +RG+  + ++Y +++ G  K G    A  + +
Sbjct: 581 VVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQ 640

Query: 199 EGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQ 233
           E I  G  P   T + ++ GL  + +L++A  +L+
Sbjct: 641 EMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLE 675


>gi|134302847|gb|ABO70667.1| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score =  248 bits (634), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 149/503 (29%), Positives = 258/503 (51%), Gaps = 17/503 (3%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   RV EA  LF  M      PNVV++TTL++G CR G +  A  + D M   G+ P 
Sbjct: 159 LCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPT 218

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY  +V G+ +  D   A      L  +M+E   +  N   ++ ++DSLC++G  ++ 
Sbjct: 219 QITYGTIVDGMCKKGDTVSA----LNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDA 274

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             +  +M +     + F    MI   C SGR   A +++  M +R ++P +V+YN++++ 
Sbjct: 275 QNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINA 334

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
             K G    A +L +E +  G +P+  TY  +++G C ++ L+ A  +   M +K     
Sbjct: 335 FVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPN 394

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               N  +   C  K   + + +L  M +T    D  T NT+I+GF  +G +  AL +L 
Sbjct: 395 LITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQ 454

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVM-----------PQRGYSPGIV 352
           +M++   C PD VT  T++ GL + G++++AL + ++VM           P  G  P + 
Sbjct: 455 EMISSGLC-PDIVTCDTLLDGLCDNGKLKDALEM-FKVMQKSKKDLDASHPFNGVEPDVQ 512

Query: 353 TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI 412
           TYN ++ GL    +  EA+E++  M   G+V D+ TY+ +IDGLC+ ++LDEA + +D +
Sbjct: 513 TYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSM 572

Query: 413 VWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMK 472
              S   +   +  +I G C++G++ + +    E+   G+  N + Y  +I G  K+   
Sbjct: 573 GSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNI 632

Query: 473 REAYQILREMRKNGLNPDAVTWR 495
             A  I +EM  +G+ PD +T R
Sbjct: 633 NGALDIFQEMISSGVYPDTITIR 655



 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 135/506 (26%), Positives = 228/506 (45%), Gaps = 54/506 (10%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C  S++  A   F  +   G  P+VV++TTL+HG C    +  A  +F +M      PN
Sbjct: 124 FCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALNLFHQMFETTCRPN 183

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +T++ L+ G+ R   +  A  L+    +RM E+  L      +  +VD +C++G     
Sbjct: 184 VVTFTTLMNGLCREGRIVEAVALL----DRMMED-GLQPTQITYGTIVDGMCKKGDTVSA 238

Query: 124 FRIAEDMPQGKSVNEEFAC-GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
             +   M +   +         +IDSLC+ GR+  A  +   M+++G+ P L +YNS++ 
Sbjct: 239 LNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIV 298

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           G C  G    A QLL+E ++    P   TY  L+     E    +A ++   ML +  + 
Sbjct: 299 GFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGII- 357

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
                                             P+ IT +++I+GFCK  R++ A  + 
Sbjct: 358 ----------------------------------PNTITYSSMIDGFCKQNRLDAAEHMF 383

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
             ++A K C+P+ +TF T+I G     RI + + LL++ M + G      TYN ++ G +
Sbjct: 384 Y-LMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHE-MTETGLVADTTTYNTLIHGFY 441

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD---------DIV 413
            +  +  A ++   M+  G+  D  T   ++DGLC++ +L +A   +          D  
Sbjct: 442 LVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDAS 501

Query: 414 WPSN--IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSM 471
            P N    D   Y  +I GL   GK  EA     E+   G+ P+ + Y+ +IDG CK S 
Sbjct: 502 HPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSR 561

Query: 472 KREAYQILREMRKNGLNPDAVTWRIL 497
             EA Q+   M     +P+ VT+  L
Sbjct: 562 LDEATQMFDSMGSKSFSPNVVTFTTL 587



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 116/475 (24%), Positives = 230/475 (48%), Gaps = 19/475 (4%)

Query: 35  LIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERM 94
           L  G+     ++ A  +F +M     LP+ + +  L+  V+R   +ER + L+  L+++M
Sbjct: 50  LQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVR---MERPD-LVISLYQKM 105

Query: 95  KEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGR 154
            E + +  +  +F  L+   C    +         + +     +      ++  LC   R
Sbjct: 106 -ERKQIRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDR 164

Query: 155 NHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKV 214
              A  + + M +    P++V++ ++++GLC+ G  + A  LL+  ++ G  P++ TY  
Sbjct: 165 VSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGT 224

Query: 215 LVEGLCGESDLEKARKVLQFMLSKKD-VDRTRICNIYLRALCLIKNPTELLNVLVFMLQT 273
           +V+G+C + D   A  +L+ M      +    I +  + +LC     ++  N+   M + 
Sbjct: 225 IVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEK 284

Query: 274 QCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQE 333
              PD+ T N++I GFC  GR  +A ++L +M+  K  +PD VT+  +I   +  G+  E
Sbjct: 285 GIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKI-SPDVVTYNALINAFVKEGKFFE 343

Query: 334 ALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVI 393
           A  L  +++P RG  P  +TY++++ G  +  R++ A+ +F  M   G   +  T+  +I
Sbjct: 344 AEELYDEMLP-RGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLI 402

Query: 394 DGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVT 453
           DG C + ++D+      ++     + D   Y  +I G    G ++ A+  L E++ SG+ 
Sbjct: 403 DGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLC 462

Query: 454 PNIVCYNVVIDGACKLSMKREAYQILREMRK-----------NGLNPDAVTWRIL 497
           P+IV  + ++DG C     ++A ++ + M+K           NG+ PD  T+ IL
Sbjct: 463 PDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNIL 517



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 88/338 (26%), Positives = 154/338 (45%), Gaps = 3/338 (0%)

Query: 165 MRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESD 224
           M ++ +   + S+N ++   C       A     +  + G  P   T+  L+ GLC E  
Sbjct: 105 MERKQIRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDR 164

Query: 225 LEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNT 284
           + +A  +   M               +  LC      E + +L  M++   QP  IT  T
Sbjct: 165 VSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGT 224

Query: 285 VINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ 344
           +++G CK G    AL +L  M       P+ V ++ II  L   GR  +A NL  + M +
Sbjct: 225 IVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTE-MQE 283

Query: 345 RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 404
           +G  P + TYN+++ G     R  +A+++   ML   +  D  TY  +I+   +  +  E
Sbjct: 284 KGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFE 343

Query: 405 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
           A+  +D+++    I +   Y++MI G C+  ++  A H  Y +   G +PN++ +N +ID
Sbjct: 344 AEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLID 403

Query: 465 GACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
           G C      +  ++L EM + GL  D  T+  L  +HG
Sbjct: 404 GYCGAKRIDDGMELLHEMTETGLVADTTTYNTL--IHG 439



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 89/308 (28%), Positives = 152/308 (49%), Gaps = 10/308 (3%)

Query: 210 HTYKVLVEGLCGESDLEKAR----KVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 265
           +++ +L++  C  S L  A     K+ +  L    V  T +    L  LC+    +E LN
Sbjct: 115 YSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTL----LHGLCVEDRVSEALN 170

Query: 266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 325
           +   M +T C+P+V+T  T++NG C+ GRI EA+ +L+ M+      P  +T+ TI+ G+
Sbjct: 171 LFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGL-QPTQITYGTIVDGM 229

Query: 326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 385
              G    ALNLL ++       P +V Y+A++  L +  R  +A+ +F  M   G+  D
Sbjct: 230 CKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPD 289

Query: 386 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY 445
             TY  +I G C S +  +A++   +++      D   Y A+I    + GK  EA     
Sbjct: 290 LFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYD 349

Query: 446 ELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL-DKLHGNR 504
           E++  G+ PN + Y+ +IDG CK +    A  +   M   G +P+ +T+  L D   G +
Sbjct: 350 EMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAK 409

Query: 505 GNDFGLRI 512
             D G+ +
Sbjct: 410 RIDDGMEL 417



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/275 (23%), Positives = 117/275 (42%), Gaps = 43/275 (15%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  CG  R+ +  +L  +M   G V +  +Y TLIHG+   G+++ A  +  EM   G+
Sbjct: 402 IDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGL 461

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLS-------VNNAAFANLVDS 113
            P+ +T   L+ G+     ++ A + MFK+ ++ K++ D S        +   +  L+  
Sbjct: 462 CPDIVTCDTLLDGLCDNGKLKDA-LEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISG 520

Query: 114 LCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC----------------------- 150
           L  EG   E   + E+MP    V +      MID LC                       
Sbjct: 521 LINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPN 580

Query: 151 ------------RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLE 198
                       ++GR      +   M +RG+  + ++Y +++ G  K G    A  + +
Sbjct: 581 VVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQ 640

Query: 199 EGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQ 233
           E I  G  P   T + ++ GL  + +L++A  +L+
Sbjct: 641 EMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLE 675


>gi|152717462|dbj|BAF73723.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score =  248 bits (633), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 149/503 (29%), Positives = 258/503 (51%), Gaps = 17/503 (3%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   RV EA  LF  M      PNVV++TTL++G CR G +  A  + D M   G+ P 
Sbjct: 159 LCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPT 218

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY  +V G+ +  D   A      L  +M+E   +  N   ++ ++DSLC++G  ++ 
Sbjct: 219 QITYGTIVDGMCKIGDTVSA----LDLLRKMEEISHIIPNVVIYSAIIDSLCKDGRHSDA 274

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             +  +M +     + F    MI   C SGR   A +++  M +R ++P +V+YN++++ 
Sbjct: 275 QNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINA 334

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
             K G    A +L +E +  G +P+  TY  +++G C ++ L+ A  +   M +K     
Sbjct: 335 FVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPN 394

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               N  +   C  K   + + +L  M +T    D  T NT+I+GF  +G +  AL +L 
Sbjct: 395 LITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQ 454

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVM-----------PQRGYSPGIV 352
           +M++   C PD VT  T++ GL + G++++AL + ++VM           P  G  P + 
Sbjct: 455 EMISSGLC-PDIVTCDTLLDGLCDNGKLKDALEM-FKVMQKSKKDLDASHPFNGVEPDVQ 512

Query: 353 TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI 412
           TYN ++ GL    +  EA+E++  M   G+V D+ TY+ +IDGLC+ ++LDEA + +D +
Sbjct: 513 TYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSM 572

Query: 413 VWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMK 472
              S   +   +  +I G C++G++ + +    E+   G+  N + Y  +I G  K+   
Sbjct: 573 GSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNI 632

Query: 473 REAYQILREMRKNGLNPDAVTWR 495
             A  I +EM  +G+ PD +T R
Sbjct: 633 NGALDIFQEMISSGVYPDTITIR 655



 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 134/506 (26%), Positives = 226/506 (44%), Gaps = 54/506 (10%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C  S++  A   F  +   G  P+VV++ TL+HG C    +  A  +F +M      PN
Sbjct: 124 FCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPN 183

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +T++ L+ G+ R   +  A  L+    +RM E+  L      +  +VD +C+ G     
Sbjct: 184 VVTFTTLMNGLCREGRIVEAVALL----DRMMED-GLQPTQITYGTIVDGMCKIGDTVSA 238

Query: 124 FRIAEDMPQGKSVNEEFAC-GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
             +   M +   +         +IDSLC+ GR+  A  +   M+++G+ P L +YNS++ 
Sbjct: 239 LDLLRKMEEISHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIV 298

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           G C  G    A QLL+E ++    P   TY  L+     E    +A ++   ML +  + 
Sbjct: 299 GFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGII- 357

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
                                             P+ IT +++I+GFCK  R++ A  + 
Sbjct: 358 ----------------------------------PNTITYSSMIDGFCKQNRLDAAEHMF 383

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
             ++A K C+P+ +TF T+I G     RI + + LL++ M + G      TYN ++ G +
Sbjct: 384 Y-LMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHE-MTETGLVADTTTYNTLIHGFY 441

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD---------DIV 413
            +  +  A ++   M+  G+  D  T   ++DGLC++ +L +A   +          D  
Sbjct: 442 LVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDAS 501

Query: 414 WPSN--IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSM 471
            P N    D   Y  +I GL   GK  EA     E+   G+ P+ + Y+ +IDG CK S 
Sbjct: 502 HPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSR 561

Query: 472 KREAYQILREMRKNGLNPDAVTWRIL 497
             EA Q+   M     +P+ VT+  L
Sbjct: 562 LDEATQMFDSMGSKSFSPNVVTFTTL 587



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 87/338 (25%), Positives = 154/338 (45%), Gaps = 3/338 (0%)

Query: 165 MRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESD 224
           M ++ +   + S+  ++   C       A     +  + G  P   T+  L+ GLC E  
Sbjct: 105 MERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDR 164

Query: 225 LEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNT 284
           + +A  +   M               +  LC      E + +L  M++   QP  IT  T
Sbjct: 165 VSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGT 224

Query: 285 VINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ 344
           +++G CK+G    AL +L  M       P+ V ++ II  L   GR  +A NL  + M +
Sbjct: 225 IVDGMCKIGDTVSALDLLRKMEEISHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTE-MQE 283

Query: 345 RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 404
           +G  P + TYN+++ G     R  +A+++   ML   +  D  TY  +I+   +  +  E
Sbjct: 284 KGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFE 343

Query: 405 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
           A+  +D+++    I +   Y++MI G C+  ++  A H  Y +   G +PN++ +N +ID
Sbjct: 344 AEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLID 403

Query: 465 GACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
           G C      +  ++L EM + GL  D  T+  L  +HG
Sbjct: 404 GYCGAKRIDDGMELLHEMTETGLVADTTTYNTL--IHG 439



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 80/266 (30%), Positives = 136/266 (51%), Gaps = 2/266 (0%)

Query: 248 NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA 307
           N  L  LC+    +E LN+   M +T C+P+V+T  T++NG C+ GRI EA+ +L+ M+ 
Sbjct: 153 NTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMME 212

Query: 308 GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRV 367
                P  +T+ TI+ G+  +G    AL+LL ++       P +V Y+A++  L +  R 
Sbjct: 213 DGL-QPTQITYGTIVDGMCKIGDTVSALDLLRKMEEISHIIPNVVIYSAIIDSLCKDGRH 271

Query: 368 EEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAM 427
            +A+ +F  M   G+  D  TY  +I G C S +  +A++   +++      D   Y A+
Sbjct: 272 SDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNAL 331

Query: 428 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
           I    + GK  EA     E++  G+ PN + Y+ +IDG CK +    A  +   M   G 
Sbjct: 332 INAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGC 391

Query: 488 NPDAVTWRIL-DKLHGNRGNDFGLRI 512
           +P+ +T+  L D   G +  D G+ +
Sbjct: 392 SPNLITFNTLIDGYCGAKRIDDGMEL 417



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/275 (23%), Positives = 117/275 (42%), Gaps = 43/275 (15%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  CG  R+ +  +L  +M   G V +  +Y TLIHG+   G+++ A  +  EM   G+
Sbjct: 402 IDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGL 461

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLS-------VNNAAFANLVDS 113
            P+ +T   L+ G+     ++ A + MFK+ ++ K++ D S        +   +  L+  
Sbjct: 462 CPDIVTCDTLLDGLCDNGKLKDA-LEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISG 520

Query: 114 LCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC----------------------- 150
           L  EG   E   + E+MP    V +      MID LC                       
Sbjct: 521 LINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPN 580

Query: 151 ------------RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLE 198
                       ++GR      +   M +RG+  + ++Y +++ G  K G    A  + +
Sbjct: 581 VVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQ 640

Query: 199 EGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQ 233
           E I  G  P   T + ++ GL  + +L++A  +L+
Sbjct: 641 EMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLE 675


>gi|30840221|emb|CAD61285.1| fertility restorer [Raphanus sativus]
 gi|32452380|emb|CAD80165.1| restorer of fertility pentatricopeptide repeat [Raphanus sativus]
 gi|32527602|gb|AAP86198.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
 gi|90903522|gb|ABE02309.1| Rf [Raphanus sativus]
 gi|90903524|gb|ABE02310.1| Rf [Raphanus sativus]
 gi|157931524|gb|ABW04886.1| PPR [Raphanus sativus]
          Length = 687

 Score =  247 bits (630), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 148/503 (29%), Positives = 257/503 (51%), Gaps = 17/503 (3%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   RV EA   F  M      PNVV++TTL++G CR G +  A  + D M   G+ P 
Sbjct: 159 LCVEDRVSEALDFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPT 218

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY  +V G+ +  D   A      L  +M+E   +  N   ++ ++DSLC++G  ++ 
Sbjct: 219 QITYGTIVDGMCKKGDTVSA----LNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDA 274

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             +  +M +     + F    MI   C SGR   A +++  M +R ++P +V+YN++++ 
Sbjct: 275 QNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINA 334

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
             K G    A +L +E +  G +P+  TY  +++G C ++ L+ A  +   M +K     
Sbjct: 335 FVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPN 394

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               N  +   C  K   + + +L  M +T    D  T NT+I+GF  +G +  AL +L 
Sbjct: 395 LITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQ 454

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVM-----------PQRGYSPGIV 352
           +M++   C PD VT  T++ GL + G++++AL + ++VM           P  G  P + 
Sbjct: 455 EMISSGLC-PDIVTCDTLLDGLCDNGKLKDALEM-FKVMQKSKKDLDASHPFNGVEPDVQ 512

Query: 353 TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI 412
           TYN ++ GL    +  EA+E++  M   G+V D+ TY+ +IDGLC+ ++LDEA + +D +
Sbjct: 513 TYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSM 572

Query: 413 VWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMK 472
              S   +   +  +I G C++G++ + +    E+   G+  N + Y  +I G  K+   
Sbjct: 573 GSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNI 632

Query: 473 REAYQILREMRKNGLNPDAVTWR 495
             A  I +EM  +G+ PD +T R
Sbjct: 633 NGALDIFQEMISSGVYPDTITIR 655



 Score =  199 bits (505), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 135/506 (26%), Positives = 227/506 (44%), Gaps = 54/506 (10%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C  S++  A   F  +   G  P+VV++TTL+HG C    +  A   F +M      PN
Sbjct: 124 FCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFETTCRPN 183

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +T++ L+ G+ R   +  A  L+    +RM E+  L      +  +VD +C++G     
Sbjct: 184 VVTFTTLMNGLCREGRIVEAVALL----DRMMED-GLQPTQITYGTIVDGMCKKGDTVSA 238

Query: 124 FRIAEDMPQGKSVNEEFAC-GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
             +   M +   +         +IDSLC+ GR+  A  +   M+++G+ P L +YNS++ 
Sbjct: 239 LNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIV 298

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           G C  G    A QLL+E ++    P   TY  L+     E    +A ++   ML +  + 
Sbjct: 299 GFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGII- 357

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
                                             P+ IT +++I+GFCK  R++ A  + 
Sbjct: 358 ----------------------------------PNTITYSSMIDGFCKQNRLDAAEHMF 383

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
             ++A K C+P+ +TF T+I G     RI + + LL++ M + G      TYN ++ G +
Sbjct: 384 Y-LMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHE-MTETGLVADTTTYNTLIHGFY 441

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD---------DIV 413
            +  +  A ++   M+  G+  D  T   ++DGLC++ +L +A   +          D  
Sbjct: 442 LVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDAS 501

Query: 414 WPSN--IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSM 471
            P N    D   Y  +I GL   GK  EA     E+   G+ P+ + Y+ +IDG CK S 
Sbjct: 502 HPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSR 561

Query: 472 KREAYQILREMRKNGLNPDAVTWRIL 497
             EA Q+   M     +P+ VT+  L
Sbjct: 562 LDEATQMFDSMGSKSFSPNVVTFTTL 587



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 120/472 (25%), Positives = 223/472 (47%), Gaps = 46/472 (9%)

Query: 35  LIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERM 94
           L  G+     ++ A  +F +M     LP+ + +  L+  V+R   +ER + L+  L+++M
Sbjct: 50  LQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVR---MERPD-LVISLYQKM 105

Query: 95  KEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGR 154
            E + +  +  +F  L+   C                         +C  +  +L   G+
Sbjct: 106 -ERKQIRCDIYSFNILIKCFC-------------------------SCSKLPFALSTFGK 139

Query: 155 NHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKV 214
                     + K GL P +V++ +++HGLC       A     +  +    P+  T+  
Sbjct: 140 ----------ITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFETTCRPNVVTFTT 189

Query: 215 LVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC-NIYLRALCLIKNPTELLNVLVFMLQ- 272
           L+ GLC E  + +A  +L  M+ +  +  T+I     +  +C   +    LN+L  M + 
Sbjct: 190 LMNGLCREGRIVEAVALLDRMM-EDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEV 248

Query: 273 TQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQ 332
           +   P+V+  + +I+  CK GR  +A  +  +M   K   PD  T+ ++I G  + GR  
Sbjct: 249 SHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEM-QEKGIFPDLFTYNSMIVGFCSSGRWS 307

Query: 333 EALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIV 392
           +A  LL Q M +R  SP +VTYNA++    +  +  EA+E+++ ML  G++ ++ TY+ +
Sbjct: 308 DAEQLL-QEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSM 366

Query: 393 IDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGV 452
           IDG C+ N+LD A+  +  +       +   +  +I G C + +I + +  L+E+ ++G+
Sbjct: 367 IDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGL 426

Query: 453 TPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW-RILDKLHGN 503
             +   YN +I G   +     A  +L+EM  +GL PD VT   +LD L  N
Sbjct: 427 VADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDN 478



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 88/308 (28%), Positives = 151/308 (49%), Gaps = 10/308 (3%)

Query: 210 HTYKVLVEGLCGESDLEKAR----KVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 265
           +++ +L++  C  S L  A     K+ +  L    V  T +    L  LC+    +E L+
Sbjct: 115 YSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTL----LHGLCVEDRVSEALD 170

Query: 266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 325
               M +T C+P+V+T  T++NG C+ GRI EA+ +L+ M+      P  +T+ TI+ G+
Sbjct: 171 FFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGL-QPTQITYGTIVDGM 229

Query: 326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 385
              G    ALNLL ++       P +V Y+A++  L +  R  +A+ +F  M   G+  D
Sbjct: 230 CKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPD 289

Query: 386 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY 445
             TY  +I G C S +  +A++   +++      D   Y A+I    + GK  EA     
Sbjct: 290 LFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYD 349

Query: 446 ELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL-DKLHGNR 504
           E++  G+ PN + Y+ +IDG CK +    A  +   M   G +P+ +T+  L D   G +
Sbjct: 350 EMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAK 409

Query: 505 GNDFGLRI 512
             D G+ +
Sbjct: 410 RIDDGMEL 417



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/275 (23%), Positives = 117/275 (42%), Gaps = 43/275 (15%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  CG  R+ +  +L  +M   G V +  +Y TLIHG+   G+++ A  +  EM   G+
Sbjct: 402 IDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGL 461

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLS-------VNNAAFANLVDS 113
            P+ +T   L+ G+     ++ A + MFK+ ++ K++ D S        +   +  L+  
Sbjct: 462 CPDIVTCDTLLDGLCDNGKLKDA-LEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISG 520

Query: 114 LCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC----------------------- 150
           L  EG   E   + E+MP    V +      MID LC                       
Sbjct: 521 LINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPN 580

Query: 151 ------------RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLE 198
                       ++GR      +   M +RG+  + ++Y +++ G  K G    A  + +
Sbjct: 581 VVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQ 640

Query: 199 EGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQ 233
           E I  G  P   T + ++ GL  + +L++A  +L+
Sbjct: 641 EMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLE 675


>gi|302799689|ref|XP_002981603.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
 gi|300150769|gb|EFJ17418.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
          Length = 609

 Score =  245 bits (626), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 149/501 (29%), Positives = 253/501 (50%), Gaps = 49/501 (9%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSR-GHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCG 59
           ++  C    +  A ++  +M +R G  P+VV+YT+++ G CR G+MD A ++  EM+  G
Sbjct: 52  INGFCKQGEMDRACEILREMVTRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKG 111

Query: 60  VLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGY 119
           V P+  T+S L+ G    R V+ A     KL++ +       ++  + + L+  LCRE  
Sbjct: 112 VEPDKFTFSALITGWCNARKVDEA----LKLYKEILTS-SCRLDAVSSSALITGLCRERR 166

Query: 120 VNEVFRIAEDMP---QGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVS 176
           + E + + ++M     G    +      +ID  C+SG    A +++ VM  R   P++V+
Sbjct: 167 IGEAYELFQEMEMREDGAWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVT 226

Query: 177 YNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFML 236
           Y+S++HGLCK G   +A  L       G +P+  TY  L+ GLC    ++ AR ++  M 
Sbjct: 227 YSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMT 286

Query: 237 SKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIE 296
           +                                   T C  D ++ N +++G+C++GRIE
Sbjct: 287 A-----------------------------------TCCPADTVSYNALLDGYCRLGRIE 311

Query: 297 EALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
           EA ++  +M A K C PD +T+T ++ G  N  R++EA  LL  +    G  P +VTY+ 
Sbjct: 312 EAKQLFKEM-AAKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSI 370

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416
           V+ G  R +R  EA E    M+   V  ++ TY+ +IDGLC++ +++ A     ++  P 
Sbjct: 371 VVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVNHAMEVLKNVDKP- 429

Query: 417 NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAY 476
              D   Y  +I+GLC + +  EA+  L E+V+  V P++  +N VI   C+L    EA+
Sbjct: 430 ---DVVTYTIVIEGLCGTDRTEEALTLLEEMVNKRVEPSVGTFNSVIGALCRLGDMDEAW 486

Query: 477 QILREMRKNGLNPDAVTWRIL 497
           ++L  M  +GL P  VT+  L
Sbjct: 487 KLLVAMAAHGLEPGMVTYTTL 507



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 112/406 (27%), Positives = 213/406 (52%), Gaps = 8/406 (1%)

Query: 98  EDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFAC-GHMIDSLCRSGRNH 156
           E ++ N   +  +V+ LC+    ++ + + ++M  GKSV  +      +I+  C+ G   
Sbjct: 3   EFVAPNERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMD 62

Query: 157 GASRVVYVMRKR-GLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVL 215
            A  ++  M  R G+ P +V+Y S+V GLC+ G   RA +++ E    G  P + T+  L
Sbjct: 63  RACEILREMVTRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSAL 122

Query: 216 VEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALC---LIKNPTELLNVLVFMLQ 272
           + G C    +++A K+ + +L+          +  +  LC    I    EL   +     
Sbjct: 123 ITGWCNARKVDEALKLYKEILTSSCRLDAVSSSALITGLCRERRIGEAYELFQEMEMRED 182

Query: 273 TQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQ 332
              +PDV+T   +I+GFCK G +E+A+K+L  M  G+ C P+ VT+++++ GL   G + 
Sbjct: 183 GAWKPDVVTYTALIDGFCKSGNLEKAMKMLGVM-EGRKCVPNVVTYSSLLHGLCKAGDLD 241

Query: 333 EALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIV 392
           +AL+ L++ M  +G  P +VTY  ++ GL    +V+ A+ + + M      AD+ +Y  +
Sbjct: 242 QALD-LFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPADTVSYNAL 300

Query: 393 IDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYEL-VDSG 451
           +DG C   +++EAK+ + ++   S + D   Y  +++G C + ++ EA   L  +   +G
Sbjct: 301 LDGYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAG 360

Query: 452 VTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           + P++V Y++V+ G  +     EA + ++EM    + P+AVT+  L
Sbjct: 361 IDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSL 406



 Score =  185 bits (469), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 130/488 (26%), Positives = 222/488 (45%), Gaps = 46/488 (9%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   ++  A ++  +MK +G  P+  +++ LI G+C   ++D A K++ E+     
Sbjct: 88  VDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSC 147

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEED--LSVNNAAFANLVDSLCREG 118
             ++++ S L+ G+ R R +  A    ++L++ M+  ED     +   +  L+D  C   
Sbjct: 148 RLDAVSSSALITGLCRERRIGEA----YELFQEMEMREDGAWKPDVVTYTALIDGFC--- 200

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
                                           +SG    A +++ VM  R   P++V+Y+
Sbjct: 201 --------------------------------KSGNLEKAMKMLGVMEGRKCVPNVVTYS 228

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
           S++HGLCK G   +A  L       G +P+  TY  L+ GLC    ++ AR ++  M + 
Sbjct: 229 SLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTAT 288

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
                T   N  L   C +    E   +   M    C PD IT   ++ GFC   R+EEA
Sbjct: 289 CCPADTVSYNALLDGYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNASRLEEA 348

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
             +L +M       PD VT++ ++ G     R  EA   + Q M  R  +P  VTY++++
Sbjct: 349 RFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFI-QEMIARNVAPNAVTYSSLI 407

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
            GL +  RV  A EV   +    VV    TY IVI+GLC +++ +EA    +++V     
Sbjct: 408 DGLCKAGRVNHAMEVLKNVDKPDVV----TYTIVIEGLCGTDRTEEALTLLEEMVNKRVE 463

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI 478
                + ++I  LCR G + EA   L  +   G+ P +V Y  +++G  +      AY++
Sbjct: 464 PSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYEL 523

Query: 479 LREMRKNG 486
              MR+  
Sbjct: 524 FEVMRRKA 531



 Score =  171 bits (434), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 126/460 (27%), Positives = 210/460 (45%), Gaps = 54/460 (11%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C    + +A K+   M+ R  VPNVV+Y++L+HG C+ G++D A  +F  M   G 
Sbjct: 196 IDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGC 255

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +PN +TY+ L+ G+     V+ A +LM ++       + +S N      L+D  CR G +
Sbjct: 256 VPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPADTVSYN-----ALLDGYCRLGRI 310

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMR-KRGLTPSLVSYNS 179
            E  ++ ++M     + +      ++   C + R   A  ++  M+   G+ P +V+Y+ 
Sbjct: 311 EEAKQLFKEMAAKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSI 370

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           +V G  +    + A + ++E I     P+  TY  L++GLC      KA +V   M   K
Sbjct: 371 VVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLC------KAGRVNHAMEVLK 424

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
           +VD+                                 PDV+T   VI G C   R EEAL
Sbjct: 425 NVDK---------------------------------PDVVTYTIVIEGLCGTDRTEEAL 451

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
            +L +MV  K   P   TF ++I  L  +G + EA  LL   M   G  PG+VTY  +L 
Sbjct: 452 TLLEEMV-NKRVEPSVGTFNSVIGALCRLGDMDEAWKLLV-AMAAHGLEPGMVTYTTLLE 509

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADST-------TYAIVIDGLCESNQLDEAKRFWDDI 412
           G  R  R+E A E+F  M      + S         ++ +I GLC++ ++D+A    +++
Sbjct: 510 GFSRTGRMEIAYELFEVMRRKAKKSSSAANLVPEQAFSALIRGLCKAREIDKAMAVVEEL 569

Query: 413 VWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGV 452
                        A++ GL R+G+  EA   +  +   G+
Sbjct: 570 RSRECEPAEEDCLAIVDGLLRAGRTEEAGKLINSISKVGL 609



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 79/229 (34%), Positives = 123/229 (53%), Gaps = 5/229 (2%)

Query: 277 PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALN 336
           P+  T N V+NG CK     +A +VL +M  GK  APD VT++T+I G    G +  A  
Sbjct: 7   PNERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACE 66

Query: 337 LLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 396
           +L +++ + G +P +VTY +V+ GL R  +++ A E+   M   GV  D  T++ +I G 
Sbjct: 67  ILREMVTRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGW 126

Query: 397 CESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYEL---VDSGVT 453
           C + ++DEA + + +I+  S   D    +A+I GLCR  +I EA     E+    D    
Sbjct: 127 CNARKVDEALKLYKEILTSSCRLDAVSSSALITGLCRERRIGEAYELFQEMEMREDGAWK 186

Query: 454 PNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
           P++V Y  +IDG CK     +A ++L  M      P+ VT+  L  LHG
Sbjct: 187 PDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSL--LHG 233


>gi|449531171|ref|XP_004172561.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
          Length = 761

 Score =  244 bits (622), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 146/544 (26%), Positives = 274/544 (50%), Gaps = 48/544 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   R  EA +LF +MK++G +P+V+SYT+LIHG+CR+G+ + A  +F+EM   G+
Sbjct: 128 IDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKAKCLFNEMLDVGI 187

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLM---------------------FKLWERMKEEED 99
             +  T S+L+  + +   V  AN L+                       +  R+ E   
Sbjct: 188 RSDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMKHRISEATR 247

Query: 100 LSV---------NNAAFANLVDSLCREGYVNEVFRIAEDMPQG------KSVNEEFACGH 144
           L +         +  A+  L+  LC+ G +N   ++ ++M         K      +   
Sbjct: 248 LFMSMQKLGCRPDAIAYGTLMKGLCQTGNINTALQLHQEMLNDTGRYGIKCKPTLISYSI 307

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
           +ID LC+  R   A  +   M+ +G+ P ++SY +++HG C  G   +A  L  E +  G
Sbjct: 308 IIDGLCKDRREDEARELFKEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVG 367

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL 264
             P   T  VL++ LC +  + +A K+L+ ++ +  +     C   ++ LC+    ++  
Sbjct: 368 IQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCIPDVVTCTTLVKGLCMKHRISKAT 427

Query: 265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA-----GKFCAPDAVTFT 319
            + + M +  C P+V+T  T++ G C+ G I+ AL++  +M++     G  C P+A++++
Sbjct: 428 QLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAISYS 487

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
            II GL   GR  EA   L++ M   G  P +++Y +++ G  R  + ++AK +FN M+ 
Sbjct: 488 IIIDGLCKCGREDEARE-LFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVD 546

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
           IGV  D TT++++ID LC+  ++ EA    + ++    I +   Y  ++KGLC + +I E
Sbjct: 547 IGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISE 606

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN------GLNPDAVT 493
           A     ++   G  P++V Y  ++ G C+    + A ++ ++M  +         PD ++
Sbjct: 607 ATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNFKPDVIS 666

Query: 494 WRIL 497
           + I+
Sbjct: 667 YSII 670



 Score =  227 bits (578), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 157/549 (28%), Positives = 273/549 (49%), Gaps = 60/549 (10%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAY-------------- 49
           LC   R+ EA +LF  MK  G  P+ ++Y TL+ G C+TG++++A               
Sbjct: 55  LCMKHRISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYG 114

Query: 50  ---------------------------KVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVER 82
                                      ++F EM+  G++P+ ++Y+ L+ G  R+   E+
Sbjct: 115 IKCKPTLVSYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEK 174

Query: 83  ANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFAC 142
           A  L  ++ + +    D++ ++     L+D LC+EG V E   + E M Q   + +    
Sbjct: 175 AKCLFNEMLD-VGIRSDVTTSSM----LIDILCKEGKVIEANELLEVMIQRGCILDIVTY 229

Query: 143 GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGI- 201
             +I  LC   R   A+R+   M+K G  P  ++Y +++ GLC+ G    A QL +E + 
Sbjct: 230 STLIKGLCMKHRISEATRLFMSMQKLGCRPDAIAYGTLMKGLCQTGNINTALQLHQEMLN 289

Query: 202 ---QFGYL--PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCL 256
              ++G    P+  +Y ++++GLC +   ++AR++ + M ++  +         +   CL
Sbjct: 290 DTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFKEMKAQGIMPDVISYTTLIHGFCL 349

Query: 257 IKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAV 316
                +   +   ML    QPDV T + +I+  CK G++ EA K+L ++V  + C PD V
Sbjct: 350 SGKWEKAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLL-EVVIQRGCIPDVV 408

Query: 317 TFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNC 376
           T TT++ GL    RI +A  L  + M + G  P +VT   +++GL +   ++ A E+   
Sbjct: 409 TCTTLVKGLCMKHRISKATQLFLK-MQKLGCMPNVVTCATLMKGLCQSGNIKIALELHKN 467

Query: 377 ML------GIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKG 430
           ML      GI    ++ +Y+I+IDGLC+  + DEA+  + ++     I D   Y ++I G
Sbjct: 468 MLSDTSPYGINCKPNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHG 527

Query: 431 LCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD 490
            CRSGK  +A +   E+VD GV P++  ++V+ID  CK     EA ++L  M + G  P+
Sbjct: 528 FCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPN 587

Query: 491 AVTWRILDK 499
            VT+  L K
Sbjct: 588 TVTYTTLVK 596



 Score =  211 bits (538), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 132/446 (29%), Positives = 226/446 (50%), Gaps = 42/446 (9%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   R  EA +LF +MK++G +P+V+SYTTLIHG+C +G+ + A  +F+EM   G+
Sbjct: 309 IDGLCKDRREDEARELFKEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGI 368

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWER-----------------MKEEEDLSV- 102
            P+  T SVL+  + +   V  AN L+  + +R                 MK     +  
Sbjct: 369 QPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCIPDVVTCTTLVKGLCMKHRISKATQ 428

Query: 103 ------------NNAAFANLVDSLCREGYVNEVFRIAEDM-----PQGKSVN-EEFACGH 144
                       N    A L+  LC+ G +     + ++M     P G +      +   
Sbjct: 429 LFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAISYSI 488

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
           +ID LC+ GR   A  +   M+  G+ P ++SY S++HG C+ G    A  L  E +  G
Sbjct: 489 IIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIG 548

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL 264
             P   T+ VL++ LC E  + +A ++L+ M+ +  +  T      ++ LC+    +E  
Sbjct: 549 VQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEAT 608

Query: 265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA-----GKFCAPDAVTFT 319
            + + M +  C PDV+T  T++ G C+ G I+ AL++   M++     G    PD ++++
Sbjct: 609 QLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNFKPDVISYS 668

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
            II GL   GR  EA   L++ M   G  P +++Y +++ G  R  ++E+AK +FN M+ 
Sbjct: 669 IIIDGLCKHGREDEARE-LFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAKHLFNEMVD 727

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEA 405
            GV  ++ TY+++I G C+  Q+D+A
Sbjct: 728 QGVQLNAVTYSVMIHGFCKEGQIDKA 753



 Score =  209 bits (531), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 142/518 (27%), Positives = 253/518 (48%), Gaps = 60/518 (11%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEM------------------ 45
           LC   R+ EA +LF  M+  G  P+ ++Y TL+ G C+TG +                  
Sbjct: 236 LCMKHRISEATRLFMSMQKLGCRPDAIAYGTLMKGLCQTGNINTALQLHQEMLNDTGRYG 295

Query: 46  -----------------------DVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVER 82
                                  D A ++F EM+  G++P+ ++Y+ L+ G   +   E+
Sbjct: 296 IKCKPTLISYSIIIDGLCKDRREDEARELFKEMKAQGIMPDVISYTTLIHGFCLSGKWEK 355

Query: 83  ANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFAC 142
           A  L  ++ + +  + D++ ++     L+D LC++G V E  ++ E + Q   + +   C
Sbjct: 356 AKCLFNEMLD-VGIQPDVTTSSV----LIDMLCKKGKVIEANKLLEVVIQRGCIPDVVTC 410

Query: 143 GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQL----LE 198
             ++  LC   R   A+++   M+K G  P++V+  +++ GLC+ G    A +L    L 
Sbjct: 411 TTLVKGLCMKHRISKATQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLS 470

Query: 199 EGIQFGY--LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCL 256
           +   +G    P+  +Y ++++GLC     ++AR++ + M +   +         +   C 
Sbjct: 471 DTSPYGINCKPNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCR 530

Query: 257 IKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAV 316
                +   +   M+    QPDV T + +I+  CK G++ EA ++L  M+  + C P+ V
Sbjct: 531 SGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQ-RGCIPNTV 589

Query: 317 TFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNC 376
           T+TT++ GL    RI EA  L  + M + G  P +VTY  +++GL +   ++ A E+   
Sbjct: 590 TYTTLVKGLCMNDRISEATQLFMK-MQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKK 648

Query: 377 ML------GIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKG 430
           ML      G     D  +Y+I+IDGLC+  + DEA+  + ++     I +   Y ++I G
Sbjct: 649 MLSDTGQYGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHG 708

Query: 431 LCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACK 468
            CRSGK+ +A H   E+VD GV  N V Y+V+I G CK
Sbjct: 709 FCRSGKLEDAKHLFNEMVDQGVQLNAVTYSVMIHGFCK 746



 Score =  202 bits (514), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 134/548 (24%), Positives = 251/548 (45%), Gaps = 83/548 (15%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C   +V EA++L   M  RG + ++V+Y+TLI G C    +  A ++F  M+  G 
Sbjct: 17  IDMFCKEGKVIEANELLEVMVQRGCILDIVTYSTLIKGLCMKHRISEATQLFMSMKKLGC 76

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+++ Y  L++G+ +T  +   N+ +    E + +     +            C+   V
Sbjct: 77  RPDAIAYGTLMKGLCQTGKI---NIALHLHQEMLNDTSQYGIK-----------CKPTLV 122

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +                       +ID LC+  R   A  +   M+ +G+ P ++SY S+
Sbjct: 123 SYSI--------------------IIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSL 162

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +HG C+ G   +A  L  E +  G      T  +L++ LC E  + +A ++L+ M+ +  
Sbjct: 163 IHGFCRSGKWEKAKCLFNEMLDVGIRSDVTTSSMLIDILCKEGKVIEANELLEVMIQRGC 222

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           +      +  ++ LC+    +E   + + M +  C+PD I   T++ G C+ G I  AL+
Sbjct: 223 ILDIVTYSTLIKGLCMKHRISEATRLFMSMQKLGCRPDAIAYGTLMKGLCQTGNINTALQ 282

Query: 301 VLNDMV--AGKF---CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN 355
           +  +M+   G++   C P  ++++ II GL    R  EA   L++ M  +G  P +++Y 
Sbjct: 283 LHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARE-LFKEMKAQGIMPDVISYT 341

Query: 356 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP 415
            ++ G     + E+AK +FN ML +G+  D TT +++ID LC+  ++ EA +  + ++  
Sbjct: 342 TLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQR 401

Query: 416 SNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVC----------------- 458
             I D      ++KGLC   +I +A     ++   G  PN+V                  
Sbjct: 402 GCIPDVVTCTTLVKGLCMKHRISKATQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIA 461

Query: 459 ------------------------YNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
                                   Y+++IDG CK   + EA ++ +EM+  G+ PD +++
Sbjct: 462 LELHKNMLSDTSPYGINCKPNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISY 521

Query: 495 RILDKLHG 502
             L  +HG
Sbjct: 522 TSL--IHG 527



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 119/443 (26%), Positives = 194/443 (43%), Gaps = 47/443 (10%)

Query: 110 LVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRG 169
           L+D  C+EG V E   + E M Q   + +      +I  LC   R   A+++   M+K G
Sbjct: 16  LIDMFCKEGKVIEANELLEVMVQRGCILDIVTYSTLIKGLCMKHRISEATQLFMSMKKLG 75

Query: 170 -----------------------------------------LTPSLVSYNSIVHGLCKHG 188
                                                      P+LVSY+ I+ GLCK  
Sbjct: 76  CRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCKPTLVSYSIIIDGLCKDR 135

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
               A +L +E    G +P   +Y  L+ G C     EKA+ +   ML           +
Sbjct: 136 REDEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKAKCLFNEMLDVGIRSDVTTSS 195

Query: 249 IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 308
           + +  LC      E   +L  M+Q  C  D++T +T+I G C   RI EA ++   M   
Sbjct: 196 MLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMKHRISEATRLFMSM-QK 254

Query: 309 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGY-----SPGIVTYNAVLRGLFR 363
             C PDA+ + T++ GL   G I  AL L  +++   G       P +++Y+ ++ GL +
Sbjct: 255 LGCRPDAIAYGTLMKGLCQTGNINTALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCK 314

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
            RR +EA+E+F  M   G++ D  +Y  +I G C S + ++AK  +++++      D   
Sbjct: 315 DRREDEARELFKEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTT 374

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
            + +I  LC+ GK+ EA   L  ++  G  P++V    ++ G C      +A Q+  +M+
Sbjct: 375 SSVLIDMLCKKGKVIEANKLLEVVIQRGCIPDVVTCTTLVKGLCMKHRISKATQLFLKMQ 434

Query: 484 KNGLNPDAVTWRILDKLHGNRGN 506
           K G  P+ VT   L K     GN
Sbjct: 435 KLGCMPNVVTCATLMKGLCQSGN 457



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 99/366 (27%), Positives = 179/366 (48%), Gaps = 39/366 (10%)

Query: 143 GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQ 202
           G +ID  C+ G+   A+ ++ VM +RG    +V+Y++++ GLC       A QL     +
Sbjct: 14  GVLIDMFCKEGKVIEANELLEVMVQRGCILDIVTYSTLIKGLCMKHRISEATQLFMSMKK 73

Query: 203 FGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTE 262
            G  P    Y  L++GLC    +  A  + Q ML                      N T 
Sbjct: 74  LGCRPDAIAYGTLMKGLCQTGKINIALHLHQEML----------------------NDTS 111

Query: 263 LLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTII 322
              +       +C+P +++ + +I+G CK  R +EA ++  +M A     PD +++T++I
Sbjct: 112 QYGI-------KCKPTLVSYSIIIDGLCKDRREDEARELFKEMKAQGM-MPDVISYTSLI 163

Query: 323 FGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGV 382
            G    G+ ++A   L+  M   G    + T + ++  L +  +V EA E+   M+  G 
Sbjct: 164 HGFCRSGKWEKA-KCLFNEMLDVGIRSDVTTSSMLIDILCKEGKVIEANELLEVMIQRGC 222

Query: 383 VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVH 442
           + D  TY+ +I GLC  +++ EA R +  +       D   Y  ++KGLC++G I+ A+ 
Sbjct: 223 ILDIVTYSTLIKGLCMKHRISEATRLFMSMQKLGCRPDAIAYGTLMKGLCQTGNINTALQ 282

Query: 443 FLYELV-DSG-----VTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRI 496
              E++ D+G       P ++ Y+++IDG CK   + EA ++ +EM+  G+ PD +++  
Sbjct: 283 LHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFKEMKAQGIMPDVISYTT 342

Query: 497 LDKLHG 502
           L  +HG
Sbjct: 343 L--IHG 346



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/236 (33%), Positives = 123/236 (52%), Gaps = 8/236 (3%)

Query: 270 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG 329
           ML    QPDV T   +I+ FCK G++ EA ++L  MV  + C  D VT++T+I GL    
Sbjct: 1   MLHVGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVQ-RGCILDIVTYSTLIKGLCMKH 59

Query: 330 RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCML------GIGVV 383
           RI EA   L+  M + G  P  + Y  +++GL +  ++  A  +   ML      GI   
Sbjct: 60  RISEATQ-LFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCK 118

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
               +Y+I+IDGLC+  + DEA+  + ++     + D   Y ++I G CRSGK  +A   
Sbjct: 119 PTLVSYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKAKCL 178

Query: 444 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
             E++D G+  ++   +++ID  CK     EA ++L  M + G   D VT+  L K
Sbjct: 179 FNEMLDVGIRSDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIK 234


>gi|302806475|ref|XP_002984987.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
 gi|300147197|gb|EFJ13862.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
          Length = 471

 Score =  239 bits (609), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 143/495 (28%), Positives = 244/495 (49%), Gaps = 46/495 (9%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C    +  A +L  +MKS G  P+  ++T +I      G++D A    D +R  G  PN 
Sbjct: 1   CNAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGA---MDHLRSMGCDPNV 57

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           +TY+ L+    R + +E A     KL E M+E      N   +  LVD+LC+   V    
Sbjct: 58  VTYTALIAAFARAKKLEEA----MKLLEEMRER-GCPPNLVTYNVLVDALCKLSMVGAAQ 112

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
            + + M +G           ++D  C+ G    A +++ +M  +G+ P++V+Y++++ GL
Sbjct: 113 DVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGL 172

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
           CK    + A ++LEE    G  P   TY  L+ GLC    +E+A ++L+ M         
Sbjct: 173 CKSQKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAG------- 225

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
                                       + C PDV+  +++I+ FCK G++ EA K L +
Sbjct: 226 ----------------------------SGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQE 257

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
           M   +  +PD VT+ T+I GL  +G+I EA  +L Q+       P +VTY+ V+ GL + 
Sbjct: 258 MRKQRK-SPDVVTYNTVIDGLCKLGKIAEAQVILDQMQESGDVLPDVVTYSTVINGLCKS 316

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY 424
             + EA+++ + M   G   D  TY  +IDGLC+  +L+EA+     +       +   Y
Sbjct: 317 DMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTY 376

Query: 425 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR- 483
             +I GLC++ K+ EA   + E+ ++G  PN+V YN +++G C     +EA Q+++ M+ 
Sbjct: 377 TTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKD 436

Query: 484 -KNGLNPDAVTWRIL 497
            +   +PDA T+R +
Sbjct: 437 GRAECSPDAATYRTI 451



 Score =  219 bits (559), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 139/481 (28%), Positives = 236/481 (49%), Gaps = 43/481 (8%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           +  ++  G+       ++S G  PNVV+YT LI  + R  +++ A K+ +EMR  G  PN
Sbjct: 32  ITAMANAGDLDGAMDHLRSMGCDPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPN 91

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY+VLV  + +   V  A  ++ K+ E        + N   F +LVD  C+ G V++ 
Sbjct: 92  LVTYNVLVDALCKLSMVGAAQDVVKKMIEG-----GFAPNVMTFNSLVDGFCKRGNVDD- 145

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
                                             A +++ +M  +G+ P++V+Y++++ G
Sbjct: 146 ----------------------------------ARKLLGIMVAKGMRPNVVTYSALIDG 171

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LCK    + A ++LEE    G  P   TY  L+ GLC    +E+A ++L+ M        
Sbjct: 172 LCKSQKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPD 231

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
             + +  + A C      E    L  M + +  PDV+T NTVI+G CK+G+I EA  +L+
Sbjct: 232 VVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILD 291

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            M       PD VT++T+I GL     + EA  LL + M + G +P +VTY  ++ GL +
Sbjct: 292 QMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDR-MCKAGCNPDVVTYTTIIDGLCK 350

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
             R+EEA+ +   M   G   +  TY  +I GLC++ ++DEA+R  +++       +   
Sbjct: 351 CGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVT 410

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVD--SGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
           Y  M+ GLC SG+I EA   +  + D  +  +P+   Y  +++      + +EA Q+L +
Sbjct: 411 YNTMVNGLCVSGRIKEAQQLVQRMKDGRAECSPDAATYRTIVNALMSSDLVQEAEQLLEQ 470

Query: 482 M 482
           M
Sbjct: 471 M 471



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 123/416 (29%), Positives = 208/416 (50%), Gaps = 47/416 (11%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC LS VG A  +   M   G  PNV+++ +L+ G+C+ G +D A K+   M   G+
Sbjct: 99  VDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGM 158

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +TYS L+ G+ +++    A     ++ E MK    ++ +   ++ L+  LC+   +
Sbjct: 159 RPNVVTYSALIDGLCKSQKFLEAK----EVLEEMK-ASGVTPDAFTYSALIHGLCKADKI 213

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E  ++   M       +      +I + C+SG+   A + +  MRK+  +P +V+YN++
Sbjct: 214 EEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTV 273

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFG-YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           + GLCK G    A  +L++  + G  LP   TY  ++ GLC    L +A+K+L       
Sbjct: 274 IDGLCKLGKIAEAQVILDQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLL------- 326

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
             DR                          M +  C PDV+T  T+I+G CK GR+EEA 
Sbjct: 327 --DR--------------------------MCKAGCNPDVVTYTTIIDGLCKCGRLEEAE 358

Query: 300 KVLNDMV-AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
            +L  M  AG  CAP+ VT+TT+I GL    ++ EA  ++ + M   G  P +VTYN ++
Sbjct: 359 YLLQGMKRAG--CAPNVVTYTTLISGLCKARKVDEAERVMEE-MRNAGCPPNLVTYNTMV 415

Query: 359 RGLFRLRRVEEAKEVFNCMLG--IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI 412
            GL    R++EA+++   M         D+ TY  +++ L  S+ + EA++  + +
Sbjct: 416 NGLCVSGRIKEAQQLVQRMKDGRAECSPDAATYRTIVNALMSSDLVQEAEQLLEQM 471



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 88/317 (27%), Positives = 157/317 (49%), Gaps = 41/317 (12%)

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
           C  G    A +LLEE    G+ P   T+  ++  +    DL+ A   L+ M         
Sbjct: 1   CNAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSM--------- 51

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
                                         C P+V+T   +I  F +  ++EEA+K+L +
Sbjct: 52  -----------------------------GCDPNVVTYTALIAAFARAKKLEEAMKLLEE 82

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
           M   + C P+ VT+  ++  L  +  +  A +++ + M + G++P ++T+N+++ G  + 
Sbjct: 83  MRE-RGCPPNLVTYNVLVDALCKLSMVGAAQDVVKK-MIEGGFAPNVMTFNSLVDGFCKR 140

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY 424
             V++A+++   M+  G+  +  TY+ +IDGLC+S +  EAK   +++       D + Y
Sbjct: 141 GNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKASGVTPDAFTY 200

Query: 425 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484
           +A+I GLC++ KI EA   L  +  SG TP++V Y+ +I   CK     EA + L+EMRK
Sbjct: 201 SALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRK 260

Query: 485 NGLNPDAVTWR-ILDKL 500
              +PD VT+  ++D L
Sbjct: 261 QRKSPDVVTYNTVIDGL 277



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 67/137 (48%), Gaps = 3/137 (2%)

Query: 370 AKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIK 429
           A E+   M   G   D+ T+  +I  +  +  LD A      +    N+     Y A+I 
Sbjct: 9   ALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSMGCDPNV---VTYTALIA 65

Query: 430 GLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNP 489
              R+ K+ EA+  L E+ + G  PN+V YNV++D  CKLSM   A  ++++M + G  P
Sbjct: 66  AFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAP 125

Query: 490 DAVTWRILDKLHGNRGN 506
           + +T+  L      RGN
Sbjct: 126 NVMTFNSLVDGFCKRGN 142


>gi|302757525|ref|XP_002962186.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
 gi|300170845|gb|EFJ37446.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
          Length = 855

 Score =  239 bits (609), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 147/534 (27%), Positives = 263/534 (49%), Gaps = 37/534 (6%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   ++ +A +LF +M S G  P +VSY T+I G     +MD AYK F+ M   G 
Sbjct: 27  LNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNTVISGLASIDKMDEAYKFFNSMIDNGC 86

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ + ++ L+ G  +    +  ++L+ +  +R + +  L      + +++   C+ G +
Sbjct: 87  EPDVIAFTTLIHGFCKAGQPQVGHMLLNQALKRFRPDVFL------YTSVIHGYCKAGDL 140

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +  F+I E+M     + +  A   +ID LC+ GR   A  +   MRK G     V++ ++
Sbjct: 141 DTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEAYELFERMRKSGCLGDYVTFMTL 200

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +  L  HG    A +L  E I+ GY P       L+  LC    +++A ++ Q +++KK 
Sbjct: 201 IEALSNHGKLDEACELYREMIERGYEPYLEVQDSLIFALCKAGKVDEANEIYQTVVAKK- 259

Query: 241 VDRTRIC-NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
           V  +R+  N  +   C +    + L +L+ M++    PD+ T N ++ GF +  R+++AL
Sbjct: 260 VATSRVAYNSLMDGYCKLGRVDDGLKLLLQMVECDNFPDIQTYNILVAGFSRANRLDDAL 319

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNL---------------------- 337
           ++   +++   C P+A T+TTII GL +  R++EA                         
Sbjct: 320 ELFK-LLSSYGCKPNAATYTTIIQGLYDAQRMEEAKAFFDEALDVISYTTVIKGLADSKR 378

Query: 338 ------LYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAI 391
                 L++ +   G SP +V Y AV+ GL +  R+E+  + F  M G   V   TTY +
Sbjct: 379 IDEACELFEKLKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEDMSGSSCVPTRTTYTV 438

Query: 392 VIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 451
           VIDGLC++  L +A + ++ +V    + D   Y  +I G  ++ K+ EA   L  ++  G
Sbjct: 439 VIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKG 498

Query: 452 VTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
             P  V Y  ++ G CKL M  EA +++ +MR+ G  P    +  L   + ++G
Sbjct: 499 PEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKG 552



 Score =  205 bits (522), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 142/558 (25%), Positives = 251/558 (44%), Gaps = 64/558 (11%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           MD  C L RV +  KL   M    + P++ +Y  L+ G+ R   +D A ++F  +   G 
Sbjct: 271 MDGYCKLGRVDDGLKLLLQMVECDNFPDIQTYNILVAGFSRANRLDDALELFKLLSSYGC 330

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLM-------------------------FKLWERMK 95
            PN+ TY+ +++G+   + +E A                              +L+E++K
Sbjct: 331 KPNAATYTTIIQGLYDAQRMEEAKAFFDEALDVISYTTVIKGLADSKRIDEACELFEKLK 390

Query: 96  EEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRN 155
                S N  A+  ++D L + G + +  +  EDM     V        +ID LC++   
Sbjct: 391 TA-GCSPNVVAYTAVIDGLLKAGRIEDGLKNFEDMSGSSCVPTRTTYTVVIDGLCKAQML 449

Query: 156 HGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVL 215
             A +V   M ++G  P  ++Y +++ G  K      A +LL+  +  G  P+  TY  +
Sbjct: 450 PDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSI 509

Query: 216 VEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQC 275
           V G C    + +A++V+  M  +       I    L          E   VL  M    C
Sbjct: 510 VHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGC 569

Query: 276 QPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEAL 335
            PDVI   ++I+     GR+ EA  V + M+  K CAPDA+T+ TII     +G ++ A 
Sbjct: 570 APDVILYTSLIDLLFSTGRVPEARHVFDSMIE-KGCAPDALTYGTIIQNFSKIGNVEAAG 628

Query: 336 NLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTT------- 388
            +L ++M + G  P    YN+++ G  +L RV++A  V++ M+  G+  ++ T       
Sbjct: 629 EIL-ELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHG 687

Query: 389 -----------------------------YAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
                                        Y I+IDGL ++ ++ EA   + +++    I 
Sbjct: 688 LFKDGKTDRAFSLFKEMLEKDEVPPTLVSYTILIDGLGKAGRVSEAFSQFQEMIDRGIIP 747

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           + + Y ++I  L ++G+I EA   + ++V  GV P++  Y+ +I G    SM   A+ + 
Sbjct: 748 ECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVF 807

Query: 480 REMRKNGLNPDAVTWRIL 497
           +EM K G  P+ VT+++L
Sbjct: 808 QEMMKRGCAPNEVTYKVL 825



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 134/503 (26%), Positives = 230/503 (45%), Gaps = 58/503 (11%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   +V EA++++  + ++    + V+Y +L+ GYC+ G +D   K+  +M  C   P+
Sbjct: 239 LCKAGKVDEANEIYQTVVAKKVATSRVAYNSLMDGYCKLGRVDDGLKLLLQMVECDNFPD 298

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             TY++LV G  R   ++ A + +FKL            N A +  ++  L         
Sbjct: 299 IQTYNILVAGFSRANRLDDA-LELFKLLSSYG----CKPNAATYTTIIQGLYD------- 346

Query: 124 FRIAEDMPQGKSVNEE----FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
              A+ M + K+  +E     +   +I  L  S R   A  +   ++  G +P++V+Y +
Sbjct: 347 ---AQRMEEAKAFFDEALDVISYTTVIKGLADSKRIDEACELFEKLKTAGCSPNVVAYTA 403

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++ GL K G      +  E+      +P+  TY V+++GLC    L  A KV + M+   
Sbjct: 404 VIDGLLKAGRIEDGLKNFEDMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMV--- 460

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                                           Q  C PD IT  T+I+GF K  +++EA 
Sbjct: 461 --------------------------------QKGCVPDTITYTTLIDGFSKASKMDEAR 488

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           K+L+ M+  K   P AVT+ +I+ G   +  I EA  ++ Q M +RG  PG+  + ++L 
Sbjct: 489 KLLDVMLT-KGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQ-MRERGCEPGLFIFTSLLS 546

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
                 R EEA +V   M   G   D   Y  +ID L  + ++ EA+  +D ++      
Sbjct: 547 YYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAP 606

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           D   Y  +I+   + G +  A   L  +  SGV P+   YN ++DG  KL    +A+ + 
Sbjct: 607 DALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVY 666

Query: 480 REMRKNGLNPDAVTWRILDKLHG 502
             M  +G+ P+AVT+ +L  +HG
Sbjct: 667 DRMVASGIKPNAVTFNVL--MHG 687



 Score =  184 bits (467), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 121/457 (26%), Positives = 217/457 (47%), Gaps = 6/457 (1%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           R+ EA +LF  +K+ G  PNVV+YT +I G  + G ++   K F++M     +P   TY+
Sbjct: 378 RIDEACELFEKLKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEDMSGSSCVPTRTTYT 437

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
           V++ G+ + + +  A     K++E+M ++  +  +   +  L+D   +   ++E  ++ +
Sbjct: 438 VVIDGLCKAQMLPDAC----KVFEQMVQKGCVP-DTITYTTLIDGFSKASKMDEARKLLD 492

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
            M            G ++   C+    + A  V+  MR+RG  P L  + S++      G
Sbjct: 493 VMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKG 552

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
               AYQ+L E    G  P    Y  L++ L     + +AR V   M+ K          
Sbjct: 553 RAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYG 612

Query: 249 IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 308
             ++    I N      +L  M ++   PD    N++++G+ K+ R+++A  V + MVA 
Sbjct: 613 TIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVAS 672

Query: 309 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE 368
               P+AVTF  ++ GL   G+   A +L  +++ +    P +V+Y  ++ GL +  RV 
Sbjct: 673 GI-KPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDEVPPTLVSYTILIDGLGKAGRVS 731

Query: 369 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI 428
           EA   F  M+  G++ +  TY  +I  L ++ ++ EAK+  +D+V      D   Y+A+I
Sbjct: 732 EAFSQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALI 791

Query: 429 KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDG 465
            GL  S  +  A     E++  G  PN V Y V+  G
Sbjct: 792 TGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVLRRG 828



 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 103/436 (23%), Positives = 198/436 (45%), Gaps = 6/436 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D L    R+ +  K F DM     VP   +YT +I G C+   +  A KVF++M   G 
Sbjct: 405 IDGLLKAGRIEDGLKNFEDMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGC 464

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P+++TY+ L+ G  +   ++ A  L+  +  +  E   ++     + ++V   C+   +
Sbjct: 465 VPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVT-----YGSIVHGFCKLDMI 519

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           NE   +   M +       F    ++      GR   A +V+  M  RG  P ++ Y S+
Sbjct: 520 NEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSL 579

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +  L   G    A  + +  I+ G  P   TY  +++      ++E A ++L+ M     
Sbjct: 580 IDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGV 639

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                  N  +     ++   +   V   M+ +  +P+ +T N +++G  K G+ + A  
Sbjct: 640 GPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFS 699

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +  +M+      P  V++T +I GL   GR+ EA +  +Q M  RG  P   TY +++  
Sbjct: 700 LFKEMLEKDEVPPTLVSYTILIDGLGKAGRVSEAFSQ-FQEMIDRGIIPECHTYTSLIYS 758

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L +  R+ EAK++   M+ +GV  D   Y+ +I GL +S+ +D A   + +++      +
Sbjct: 759 LAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPN 818

Query: 421 NYVYAAMIKGLCRSGK 436
              Y  + +G   +G+
Sbjct: 819 EVTYKVLRRGFRAAGR 834



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 86/340 (25%), Positives = 149/340 (43%), Gaps = 3/340 (0%)

Query: 142 CGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGI 201
           C  +++ LC++ +   A  +   M   G  P++VSYN+++ GL        AY+     I
Sbjct: 23  CNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNTVISGLASIDKMDEAYKFFNSMI 82

Query: 202 QFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPT 261
             G  P    +  L+ G C     +    +L   L +   D     ++ +   C   +  
Sbjct: 83  DNGCEPDVIAFTTLIHGFCKAGQPQVGHMLLNQALKRFRPDVFLYTSV-IHGYCKAGDLD 141

Query: 262 ELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTI 321
               +L  ML   C PD      +I+  CK+GR++EA ++   M     C  D VTF T+
Sbjct: 142 TGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEAYELFERMRKSG-CLGDYVTFMTL 200

Query: 322 IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG 381
           I  L N G++ EA   LY+ M +RGY P +   ++++  L +  +V+EA E++  ++   
Sbjct: 201 IEALSNHGKLDEACE-LYREMIERGYEPYLEVQDSLIFALCKAGKVDEANEIYQTVVAKK 259

Query: 382 VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAV 441
           V      Y  ++DG C+  ++D+  +    +V   N  D   Y  ++ G  R+ ++ +A+
Sbjct: 260 VATSRVAYNSLMDGYCKLGRVDDGLKLLLQMVECDNFPDIQTYNILVAGFSRANRLDDAL 319

Query: 442 HFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
                L   G  PN   Y  +I G        EA     E
Sbjct: 320 ELFKLLSSYGCKPNAATYTTIIQGLYDAQRMEEAKAFFDE 359



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 129/286 (45%), Gaps = 38/286 (13%)

Query: 247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV 306
           CNI L  LC  +   + + + + M    C+P +++ NTVI+G   + +++EA K  N M+
Sbjct: 23  CNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNTVISGLASIDKMDEAYKFFNSMI 82

Query: 307 AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 366
               C PD + FTT+I G    G+ Q    LL Q +  + + P +  Y +V+ G  +   
Sbjct: 83  DNG-CEPDVIAFTTLIHGFCKAGQPQVGHMLLNQAL--KRFRPDVFLYTSVIHGYCKAGD 139

Query: 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAA 426
           ++   ++   ML  G + D+  Y ++ID LC+  ++DEA   ++ +     + D   +  
Sbjct: 140 LDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEAYELFERMRKSGCLGDYVTFMT 199

Query: 427 MIKGLCRSGKIHEAVHFLYELVDSGVTPNI------------------------------ 456
           +I+ L   GK+ EA     E+++ G  P +                              
Sbjct: 200 LIEALSNHGKLDEACELYREMIERGYEPYLEVQDSLIFALCKAGKVDEANEIYQTVVAKK 259

Query: 457 -----VCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
                V YN ++DG CKL    +  ++L +M +    PD  T+ IL
Sbjct: 260 VATSRVAYNSLMDGYCKLGRVDDGLKLLLQMVECDNFPDIQTYNIL 305



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 71/220 (32%), Positives = 111/220 (50%), Gaps = 19/220 (8%)

Query: 295 IEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTY 354
           +EEAL  L +M       PD V    ++ GL    +I +A+ L  + MP  G  P IV+Y
Sbjct: 1   MEEALDCLKEMHTTGL-MPDVVNCNIVLNGLCKARKIDKAIELFLE-MPSMGCEPTIVSY 58

Query: 355 NAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ-------LDEA-K 406
           N V+ GL  + +++EA + FN M+  G   D   +  +I G C++ Q       L++A K
Sbjct: 59  NTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHMLLNQALK 118

Query: 407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466
           RF  D+         ++Y ++I G C++G +      L E++ +G  P+   Y V+ID  
Sbjct: 119 RFRPDV---------FLYTSVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPL 169

Query: 467 CKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           CKL    EAY++   MRK+G   D VT+  L +   N G 
Sbjct: 170 CKLGRVDEAYELFERMRKSGCLGDYVTFMTLIEALSNHGK 209


>gi|302803484|ref|XP_002983495.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
 gi|300148738|gb|EFJ15396.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
          Length = 561

 Score =  237 bits (605), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 152/493 (30%), Positives = 253/493 (51%), Gaps = 16/493 (3%)

Query: 11  GEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVL 70
           G+A +LF + +    VPN  +Y +LIHG C+ G++D AY++ DEMR  G+ P    ++ +
Sbjct: 15  GQAVQLFREERC---VPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGV 71

Query: 71  VRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDM 130
           +RG+ +      A +  FK     K   D+      F  LVD+L + G V E F+I E M
Sbjct: 72  IRGLCKAGRFGDA-LGYFKTVAGTKCTPDI----ITFNILVDALVKSGRVEEAFQIFESM 126

Query: 131 -PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG 189
               + +        +I+ LC+ G+   A  ++ +M + G  P++++Y+ +V GLCK G 
Sbjct: 127 HTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGR 186

Query: 190 CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNI 249
             + + LL+E  + G+ P    Y  L+ GLC    L++A +++Q M+           N 
Sbjct: 187 TDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNS 246

Query: 250 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK 309
            +   C  K       ++  M +  C PDVI  NTVI G C+  R+++A  +L  MVA +
Sbjct: 247 LMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAAR 306

Query: 310 FCAPDAVTFTTIIFGLLNVGRIQ-----EALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
            C PD +T++TII GL    R+      EA   + ++M Q G  P   TY  V+ GL R 
Sbjct: 307 -CVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRA 365

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY 424
           R+ ++A  +   M+   VV D +++++VI  LC+S+ LD A + +  +       +   Y
Sbjct: 366 RKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAY 425

Query: 425 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484
           AA+I GL + G++ +AV  ++EL+     P +  YN V+DG C +    EA +++  M  
Sbjct: 426 AALIDGLSKGGEVDKAVR-VFELMVESFRPGVATYNSVLDGLCGVGRIEEAVRMVEGMIH 484

Query: 485 NGLNPDAVTWRIL 497
               PD  ++  L
Sbjct: 485 KECFPDGASYGAL 497



 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 122/458 (26%), Positives = 232/458 (50%), Gaps = 15/458 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGH-VPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCG 59
           +D L    RV EA ++F  M +    +PNVV+YTT+I+G C+ G++D A ++ D M   G
Sbjct: 107 VDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETG 166

Query: 60  VLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGY 119
             PN +TYSVLV G+ +    ++   L+ ++  R  + + +  N      L++ LC+   
Sbjct: 167 CCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYN-----TLLNGLCKSRR 221

Query: 120 VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           ++E   + + M +            +++  CRS +   A R++ VM +RG  P +++YN+
Sbjct: 222 LDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNT 281

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLC------GESDLEKARKVLQ 233
           ++ GLC+      A  LL++ +    +P   TY  +++GLC       +  LE A ++L+
Sbjct: 282 VIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILE 341

Query: 234 FMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMG 293
            M             + +  LC  +   + L +L  M+ ++  PD+ + + VI   CK  
Sbjct: 342 MMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSH 401

Query: 294 RIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVT 353
            ++ A K+   M++ + C P+ V +  +I GL   G + +A+  ++++M +  + PG+ T
Sbjct: 402 DLDAAYKIFG-MMSERECKPNPVAYAALIDGLSKGGEVDKAVR-VFELMVE-SFRPGVAT 458

Query: 354 YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413
           YN+VL GL  + R+EEA  +   M+      D  +Y  +I GLC  + ++EA   +  + 
Sbjct: 459 YNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVE 518

Query: 414 WPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 451
                 +  VY  ++  LC+  ++ +A     +L+++G
Sbjct: 519 AKGFAMEVGVYNVLVNELCKKKRLSDAHGVANKLIEAG 556



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 98/205 (47%), Gaps = 6/205 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   +  +A  L   M     VP++ S++ +I   C++ ++D AYK+F  M     
Sbjct: 359 IEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSEREC 418

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN + Y+ L+ G+ +  +V++A     +++E M E     V  A + +++D LC  G +
Sbjct: 419 KPNPVAYAALIDGLSKGGEVDKA----VRVFELMVESFRPGV--ATYNSVLDGLCGVGRI 472

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E  R+ E M   +   +  + G +I  LCR      A  +   +  +G    +  YN +
Sbjct: 473 EEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVGVYNVL 532

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGY 205
           V+ LCK      A+ +  + I+ GY
Sbjct: 533 VNELCKKKRLSDAHGVANKLIEAGY 557


>gi|147787958|emb|CAN73849.1| hypothetical protein VITISV_021776 [Vitis vinifera]
          Length = 671

 Score =  236 bits (603), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 152/530 (28%), Positives = 263/530 (49%), Gaps = 26/530 (4%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C L+RVG A  +   +   GH P+  ++TTLI G C  G++  A  +FD+M   G 
Sbjct: 103 INSFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGICVEGKIGEALHLFDKMIGEGF 162

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TY  L+ G+ +  +   A  L+  + ++     +   N  A+  ++DSLC++  V
Sbjct: 163 RPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQK-----NCQPNVFAYNTIIDSLCKDRQV 217

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E F +  +M       + F    +I +LC        + ++  M    + P +VS+N++
Sbjct: 218 TEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTV 277

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK-- 238
           V  LCK G    A+ ++++ IQ G  P+  TY  L++G C  S++++A KV   M+ K  
Sbjct: 278 VDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGC 337

Query: 239 -----------------KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVIT 281
                            + +D+       +   C   N  E + V   M+   C P+VI+
Sbjct: 338 MPNVISYNTLINGYCKIQRIDKAIHYTXLMDXXCCYLNMDEAVKVFDTMVCKGCMPNVIS 397

Query: 282 LNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQV 341
            NT+ING+CK+ RI++A+ +  +M   +   PD VT++T+I GL +V R+Q+A+ L ++ 
Sbjct: 398 YNTLINGYCKIQRIDKAMYLFGEMCRQEL-IPDTVTYSTLIHGLCHVERLQDAIALFHE- 455

Query: 342 MPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ 401
           M      P +VTY  +L  L + R + EA  +   + G  +  D     I IDG+C + +
Sbjct: 456 MVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGE 515

Query: 402 LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNV 461
           L+ A+  + ++       D + Y+ MI GLCR G + EA     E+ ++G T N   YN 
Sbjct: 516 LEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNT 575

Query: 462 VIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGNDFGLR 511
           +  G  + +    A Q+L+EM   G + DA T  +  K+  + G D  L+
Sbjct: 576 ITRGFLRNNETSRAIQLLQEMVARGFSADASTMTLFVKMLSDDGLDQSLK 625



 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 121/489 (24%), Positives = 227/489 (46%), Gaps = 24/489 (4%)

Query: 27  PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVL 86
           P+ V +  L+    +         +  +M   G+ PN  T  +L+        V  A  +
Sbjct: 59  PSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHILINSFCHLNRVGFAFSV 118

Query: 87  MFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMI 146
           + K+  ++  + D     A F  L+  +C EG + E   + + M       +    G +I
Sbjct: 119 LAKIL-KLGHQPD----TATFTTLIRGICVEGKIGEALHLFDKMIGEGFRPDVVTYGTLI 173

Query: 147 DSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL 206
           + LC+ G    A R++  M ++   P++ +YN+I+  LCK      A+ L  E +  G  
Sbjct: 174 NGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGIS 233

Query: 207 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 266
           P   TY  L+  LC   + +    +L  M+  K +      N  + ALC     TE  +V
Sbjct: 234 PDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDV 293

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
           +  M+Q   +P+V+T   +++G C +  ++EA+KV + MV  K C P+ +++ T+I G  
Sbjct: 294 VDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVC-KGCMPNVISYNTLINGYC 352

Query: 327 NVGRIQEALNL------------------LYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE 368
            + RI +A++                   ++  M  +G  P +++YN ++ G  +++R++
Sbjct: 353 KIQRIDKAIHYTXLMDXXCCYLNMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRID 412

Query: 369 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI 428
           +A  +F  M    ++ D+ TY+ +I GLC   +L +A   + ++V  S I +   Y  ++
Sbjct: 413 KAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILL 472

Query: 429 KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLN 488
             LC++  + EA+  L  +  S + P+I   N+ IDG C+      A  +   +   GL 
Sbjct: 473 DYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQ 532

Query: 489 PDAVTWRIL 497
           PD  T+ I+
Sbjct: 533 PDVWTYSIM 541



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 113/229 (49%), Gaps = 5/229 (2%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C + R+ +A  LF +M  +  +P+ V+Y+TLIHG C    +  A  +F EM  C  +PN 
Sbjct: 406 CKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNL 465

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           +TY +L+  + + R +  A  L+ K  E    + D+ VNN A    +D +CR G +    
Sbjct: 466 VTYRILLDYLCKNRYLAEAMALL-KAIEGSNLDPDIQVNNIA----IDGMCRAGELEAAR 520

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
            +  ++       + +    MI+ LCR G    AS++   M + G T +   YN+I  G 
Sbjct: 521 DLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTITRGF 580

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQ 233
            ++    RA QLL+E +  G+     T  + V+ L  +   +  +++L+
Sbjct: 581 LRNNETSRAIQLLQEMVARGFSADASTMTLFVKMLSDDGLDQSLKQILR 629


>gi|302784458|ref|XP_002974001.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
 gi|300158333|gb|EFJ24956.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
          Length = 561

 Score =  236 bits (602), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 151/493 (30%), Positives = 253/493 (51%), Gaps = 16/493 (3%)

Query: 11  GEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVL 70
           G+A +LF + +    VPN  +Y +LIHG C+ G++D AY++ DEMR  G+ P    ++ +
Sbjct: 15  GQAVQLFREERC---VPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGV 71

Query: 71  VRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDM 130
           ++G+ +      A +  FK     K   D+      F  LVD+L + G V E F+I E M
Sbjct: 72  IKGLCKAGRFGDA-LGYFKTVAGTKCTPDI----ITFNILVDALVKSGRVEEAFQIFESM 126

Query: 131 -PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG 189
               + +        +I+ LC+ G+   A  ++ +M + G  P++++Y+ +V GLCK G 
Sbjct: 127 HTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGR 186

Query: 190 CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNI 249
             + + LL+E  + G+ P    Y  L+ GLC    L++A +++Q M+           N 
Sbjct: 187 TDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNS 246

Query: 250 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK 309
            +   C  K       ++  M +  C PDVI  NTVI G C+  R+++A  +L  MVA +
Sbjct: 247 LMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAAR 306

Query: 310 FCAPDAVTFTTIIFGLLNVGRIQ-----EALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
            C PD +T++TII GL    R+      EA   + ++M Q G  P   TY  V+ GL R 
Sbjct: 307 -CVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRA 365

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY 424
           R+ ++A  +   M+   VV D +++++VI  LC+S+ LD A + +  +       +   Y
Sbjct: 366 RKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAY 425

Query: 425 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484
           AA+I GL + G++ +AV  ++EL+     P +  YN V+DG C +    EA +++  M  
Sbjct: 426 AALIDGLSKGGEVDKAVR-VFELMVESFRPGVATYNSVLDGLCGVGRIEEAVRMVEGMIH 484

Query: 485 NGLNPDAVTWRIL 497
               PD  ++  L
Sbjct: 485 KECFPDGASYGAL 497



 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 122/458 (26%), Positives = 232/458 (50%), Gaps = 15/458 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGH-VPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCG 59
           +D L    RV EA ++F  M +    +PNVV+YTT+I+G C+ G++D A ++ D M   G
Sbjct: 107 VDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETG 166

Query: 60  VLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGY 119
             PN +TYSVLV G+ +    ++   L+ ++  R  + + +  N      L++ LC+   
Sbjct: 167 CCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYN-----TLLNGLCKSRR 221

Query: 120 VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           ++E   + + M +            +++  CRS +   A R++ VM +RG  P +++YN+
Sbjct: 222 LDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNT 281

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLC------GESDLEKARKVLQ 233
           ++ GLC+      A  LL++ +    +P   TY  +++GLC       +  LE A ++L+
Sbjct: 282 VIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILE 341

Query: 234 FMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMG 293
            M             + +  LC  +   + L +L  M+ ++  PD+ + + VI   CK  
Sbjct: 342 MMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSH 401

Query: 294 RIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVT 353
            ++ A K+   M++ + C P+ V +  +I GL   G + +A+  ++++M +  + PG+ T
Sbjct: 402 DLDAAYKIFG-MMSERECKPNPVAYAALIDGLSKGGEVDKAVR-VFELMVE-SFRPGVAT 458

Query: 354 YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413
           YN+VL GL  + R+EEA  +   M+      D  +Y  +I GLC  + ++EA   +  + 
Sbjct: 459 YNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVE 518

Query: 414 WPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 451
                 +  VY  ++  LC+  ++ +A     +L+++G
Sbjct: 519 AKGFAMEVGVYNVLVNELCKKKRLSDAHGVANKLIEAG 556



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 98/205 (47%), Gaps = 6/205 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   +  +A  L   M     VP++ S++ +I   C++ ++D AYK+F  M     
Sbjct: 359 IEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSEREC 418

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN + Y+ L+ G+ +  +V++A     +++E M E     V  A + +++D LC  G +
Sbjct: 419 KPNPVAYAALIDGLSKGGEVDKA----VRVFELMVESFRPGV--ATYNSVLDGLCGVGRI 472

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E  R+ E M   +   +  + G +I  LCR      A  +   +  +G    +  YN +
Sbjct: 473 EEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVGVYNVL 532

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGY 205
           V+ LCK      A+ +  + I+ GY
Sbjct: 533 VNELCKKKRLSDAHGVANKLIEAGY 557


>gi|302808965|ref|XP_002986176.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
 gi|300146035|gb|EFJ12707.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
          Length = 609

 Score =  236 bits (602), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 144/487 (29%), Positives = 242/487 (49%), Gaps = 14/487 (2%)

Query: 4   LCGLSRVGEAH---KLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           + G    G+ H   +L  +MKS G  P+  ++T +I      G++D A    D +R  G 
Sbjct: 119 ISGFCNAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGA---MDHLRSMGC 175

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +TY+ L+    R + +E A     KL E M+E      N   +  LVD+LC+   V
Sbjct: 176 DPNVVTYTALIAAFARAKKLEEA----MKLLEEMRER-GCPPNLVTYNVLVDALCKLSMV 230

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                + + M +G           ++D  C+ G    A +++ +M  +G+ P++V+Y+++
Sbjct: 231 GAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSAL 290

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GLCK    + A ++LEE    G  P   TY  L+ GLC    +E+A ++L+ M     
Sbjct: 291 IDGLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGC 350

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                + +  + A C      E    L  M + +  PDV+T NTVI+G CK+G+I EA  
Sbjct: 351 TPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQV 410

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +L  M       PD VT++T+I GL     + EA  LL + M + G +P +VTY  ++ G
Sbjct: 411 ILEQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDR-MCKAGCNPDVVTYTTIIDG 469

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L +  R+EEA+ +   M   G   +  TY  +I GLC++ ++DEA+R  +++       +
Sbjct: 470 LCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPN 529

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVD--SGVTPNIVCYNVVIDGACKLSMKREAYQI 478
              Y  M+ GLC SG+I EA   +  + D  +  +P+   Y  +++      + +EA Q+
Sbjct: 530 LVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECSPDAATYRTIVNALMSSDLVQEAEQL 589

Query: 479 LREMRKN 485
           L +M+  
Sbjct: 590 LEQMKST 596



 Score =  224 bits (571), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 142/487 (29%), Positives = 234/487 (48%), Gaps = 46/487 (9%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           EA  LF         P+V SY  +I G+C  G++  A ++ +EM+  G  P++ T++ ++
Sbjct: 95  EAGDLFRSELLASCEPDVCSYNIVISGFCNAGDLHAALELLEEMKSAGFAPDAFTHTPII 154

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP 131
             +    D++ A   +  +            N   +  L+ +  R   + E  ++ E+M 
Sbjct: 155 TAMANAGDLDGAMDHLRSMG--------CDPNVVTYTALIAAFARAKKLEEAMKLLEEM- 205

Query: 132 QGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCM 191
                                             R+RG  P+LV+YN +V  LCK     
Sbjct: 206 ----------------------------------RERGCPPNLVTYNVLVDALCKLSMVG 231

Query: 192 RAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYL 251
            A  ++++ I+ G+ P+  T+  LV+G C   +++ ARK+L  M++K         +  +
Sbjct: 232 AAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALI 291

Query: 252 RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC 311
             LC  +   E   VL  M      PD  T + +I+G CK  +IEEA ++L  M AG  C
Sbjct: 292 DGLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRM-AGSGC 350

Query: 312 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK 371
            PD V +++II      G++ EA   L ++  QR  SP +VTYN V+ GL +L ++ EA+
Sbjct: 351 TPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQR-KSPDVVTYNTVIDGLCKLGKIAEAQ 409

Query: 372 EVFNCMLGIG-VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKG 430
            +   M   G V+ D  TY+ VI+GLC+S+ L EA++  D +       D   Y  +I G
Sbjct: 410 VILEQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDG 469

Query: 431 LCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD 490
           LC+ G++ EA + L  +  +G  PN+V Y  +I G CK     EA +++ EMR  G  P+
Sbjct: 470 LCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPN 529

Query: 491 AVTWRIL 497
            VT+  +
Sbjct: 530 LVTYNTM 536



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 124/416 (29%), Positives = 208/416 (50%), Gaps = 47/416 (11%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC LS VG A  +   M   G  PNV+++ +L+ G+C+ G +D A K+   M   G+
Sbjct: 221 VDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGM 280

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +TYS L+ G+ +++    A     ++ E MK    ++ +   ++ L+  LC+   +
Sbjct: 281 RPNVVTYSALIDGLCKSQKFLEAK----EVLEEMK-TRGVTPDAFTYSALIHGLCKADKI 335

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E  ++   M       +      +I + C+SG+   A + +  MRK+  +P +V+YN++
Sbjct: 336 EEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTV 395

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFG-YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           + GLCK G    A  +LE+  + G  LP   TY  ++ GLC    L +A+K+L       
Sbjct: 396 IDGLCKLGKIAEAQVILEQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLL------- 448

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
             DR                          M +  C PDV+T  T+I+G CK GR+EEA 
Sbjct: 449 --DR--------------------------MCKAGCNPDVVTYTTIIDGLCKCGRLEEAE 480

Query: 300 KVLNDMV-AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
            +L  M  AG  CAP+ VT+TT+I GL    ++ EA  ++ + M   G  P +VTYN ++
Sbjct: 481 YLLQGMKRAG--CAPNVVTYTTLISGLCKARKVDEAERVMEE-MRNAGCPPNLVTYNTMV 537

Query: 359 RGLFRLRRVEEAKEVFNCMLG--IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI 412
            GL    R++EA+++   M         D+ TY  +++ L  S+ + EA++  + +
Sbjct: 538 NGLCVSGRIKEAQQLVQRMKDGRAECSPDAATYRTIVNALMSSDLVQEAEQLLEQM 593



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 124/406 (30%), Positives = 204/406 (50%), Gaps = 15/406 (3%)

Query: 97  EEDLSVNNAA------FANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC 150
           E DLS  + A         +V+SL         FR A     G S +  F+   ++  L 
Sbjct: 30  EPDLSPFSGASTTPRIVGRVVNSLKDAKLALAFFRWAPASIPGFS-HTAFSWNSLLQVLV 88

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
           R  ++  A  +          P + SYN ++ G C  G    A +LLEE    G+ P   
Sbjct: 89  RCKKHREAGDLFRSELLASCEPDVCSYNIVISGFCNAGDLHAALELLEEMKSAGFAPDAF 148

Query: 211 TYKVLVEGLCGESDLEKARKVLQFMLSKKDV-DRTRICNIYLRALCLIKNPTELLNVLVF 269
           T+  ++  +    DL+ A   L+ M    +V   T +   + RA    K   E + +L  
Sbjct: 149 THTPIITAMANAGDLDGAMDHLRSMGCDPNVVTYTALIAAFARA----KKLEEAMKLLEE 204

Query: 270 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG 329
           M +  C P+++T N +++  CK+  +  A  V+  M+ G F AP+ +TF +++ G    G
Sbjct: 205 MRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGF-APNVMTFNSLVDGFCKRG 263

Query: 330 RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTY 389
            + +A  LL  +M  +G  P +VTY+A++ GL + ++  EAKEV   M   GV  D+ TY
Sbjct: 264 NVDDARKLL-GIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAFTY 322

Query: 390 AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449
           + +I GLC++++++EA++    +       D  VY+++I   C+SGK+ EA   L E+  
Sbjct: 323 SALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRK 382

Query: 450 SGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG-LNPDAVTW 494
              +P++V YN VIDG CKL    EA  IL +M+++G + PD VT+
Sbjct: 383 QRKSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQESGDVLPDVVTY 428



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/140 (35%), Positives = 77/140 (55%), Gaps = 5/140 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   R+ EA  L   MK  G  PNVV+YTTLI G C+  ++D A +V +EMR+ G 
Sbjct: 467 IDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGC 526

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKE-EEDLSVNNAAFANLVDSLCREGY 119
            PN +TY+ +V G+  +  ++ A     +L +RMK+   + S + A +  +V++L     
Sbjct: 527 PPNLVTYNTMVNGLCVSGRIKEAQ----QLVQRMKDGRAECSPDAATYRTIVNALMSSDL 582

Query: 120 VNEVFRIAEDMPQGKSVNEE 139
           V E  ++ E M    S  +E
Sbjct: 583 VQEAEQLLEQMKSTTSSQQE 602



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 76/158 (48%), Gaps = 3/158 (1%)

Query: 349 PGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRF 408
           P + +YN V+ G      +  A E+   M   G   D+ T+  +I  +  +  LD A   
Sbjct: 110 PDVCSYNIVISGFCNAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDH 169

Query: 409 WDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACK 468
              +    N+     Y A+I    R+ K+ EA+  L E+ + G  PN+V YNV++D  CK
Sbjct: 170 LRSMGCDPNV---VTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCK 226

Query: 469 LSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           LSM   A  ++++M + G  P+ +T+  L      RGN
Sbjct: 227 LSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGN 264



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 42/98 (42%)

Query: 409 WDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACK 468
           W     P   H  + + ++++ L R  K  EA       + +   P++  YN+VI G C 
Sbjct: 65  WAPASIPGFSHTAFSWNSLLQVLVRCKKHREAGDLFRSELLASCEPDVCSYNIVISGFCN 124

Query: 469 LSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
                 A ++L EM+  G  PDA T   +     N G+
Sbjct: 125 AGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGD 162


>gi|255557743|ref|XP_002519901.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540947|gb|EEF42505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 777

 Score =  236 bits (601), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 145/506 (28%), Positives = 250/506 (49%), Gaps = 7/506 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C   RV +A +LF  M+  G  PNVV+Y  +IHG C+ G +D A++  ++M    V
Sbjct: 204 VNAFCTGGRVDDAIELFRKMEKVGVAPNVVTYNNIIHGLCKNGRLDEAFQFKEKMEKERV 263

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TY VL+ G+++    + AN ++ ++ +R       + NN  +  L+D  CR G +
Sbjct: 264 KPSLVTYGVLINGLVKLERFDEANCILKEMSDR-----GYAPNNVVYNTLIDGYCRIGNI 318

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +   +I +DM           C  +I   C+S +   A  ++  M   G   +  ++ S+
Sbjct: 319 STALQIRDDMISNGISPNSVTCNSLIQGYCKSNQMEHAEHLLEEMLTGGGVINQGTFTSV 378

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +H LC       A   + E +   + P++    +LV GLC      +A ++   +L K  
Sbjct: 379 IHRLCLKCRFDSALLFIMEMLLRNFKPNDGLLTLLVSGLCQNGKQSEAIELWYRLLEKGF 438

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
              T   N  +  LC   +  E   +L  ML+     D I+ NT+I   CK G++EE  K
Sbjct: 439 AANTVTSNALIHGLCEAGSKEEAAKLLKEMLERGLVLDSISYNTLILACCKEGKVEEGFK 498

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +  +MV  +   PD  T+  ++ GL N+G+I+EA  L ++   + G  P   TY  ++ G
Sbjct: 499 LKEEMVR-RGIQPDMYTYNMLLHGLCNMGKIEEAGGLWHEC-KKNGNFPDAYTYGIMIDG 556

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
             +  RVEE +++F  M+ + +  ++  Y  +I   CE+  + EA R  DD+        
Sbjct: 557 YCKANRVEEGEKLFQEMVTMKIEQNAVVYGTLIRAYCENGNMREAFRLRDDMRSRGIPQT 616

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
           +  Y+++I GL   G +  A   L E+   G++PN+VCY  +I G CKL    +   IL+
Sbjct: 617 SATYSSLIHGLSNIGLVDSANQLLDEMRKEGLSPNVVCYTALIGGYCKLGQMHKVDSILQ 676

Query: 481 EMRKNGLNPDAVTWRILDKLHGNRGN 506
           EM  N ++P+ +T+ I+   H   GN
Sbjct: 677 EMSINNVHPNKITYTIMINGHCKLGN 702



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 136/502 (27%), Positives = 240/502 (47%), Gaps = 17/502 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ L  L R  EA+ +  +M  RG+ PN V Y TLI GYCR G +  A ++ D+M   G+
Sbjct: 274 INGLVKLERFDEANCILKEMSDRGYAPNNVVYNTLIDGYCRIGNISTALQIRDDMISNGI 333

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLS----VNNAAFANLVDSLCR 116
            PNS+T + L++G  ++  +E A  L+         EE L+    +N   F +++  LC 
Sbjct: 334 SPNSVTCNSLIQGYCKSNQMEHAEHLL---------EEMLTGGGVINQGTFTSVIHRLCL 384

Query: 117 EGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVS 176
           +   +       +M        +     ++  LC++G+   A  + Y + ++G   + V+
Sbjct: 385 KCRFDSALLFIMEMLLRNFKPNDGLLTLLVSGLCQNGKQSEAIELWYRLLEKGFAANTVT 444

Query: 177 YNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFML 236
            N+++HGLC+ G    A +LL+E ++ G +    +Y  L+   C E  +E+  K+ + M+
Sbjct: 445 SNALIHGLCEAGSKEEAAKLLKEMLERGLVLDSISYNTLILACCKEGKVEEGFKLKEEMV 504

Query: 237 SKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIE 296
            +         N+ L  LC +    E   +     +    PD  T   +I+G+CK  R+E
Sbjct: 505 RRGIQPDMYTYNMLLHGLCNMGKIEEAGGLWHECKKNGNFPDAYTYGIMIDGYCKANRVE 564

Query: 297 EALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
           E  K+  +MV  K    +AV + T+I      G ++EA  L    M  RG      TY++
Sbjct: 565 EGEKLFQEMVTMKI-EQNAVVYGTLIRAYCENGNMREAFRL-RDDMRSRGIPQTSATYSS 622

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416
           ++ GL  +  V+ A ++ + M   G+  +   Y  +I G C+  Q+ +      ++   +
Sbjct: 623 LIHGLSNIGLVDSANQLLDEMRKEGLSPNVVCYTALIGGYCKLGQMHKVDSILQEMSI-N 681

Query: 417 NIHDNYV-YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREA 475
           N+H N + Y  MI G C+ G +  A   L E+   G+ P+ V YN + +G CK     EA
Sbjct: 682 NVHPNKITYTIMINGHCKLGNMKAAAKLLNEMAQKGIVPDAVTYNALTNGFCKEGKMEEA 741

Query: 476 YQILREMRKNGLNPDAVTWRIL 497
            ++   M   G++ D +T+  L
Sbjct: 742 LKVCDLMSTGGISLDDITYTTL 763



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 115/431 (26%), Positives = 202/431 (46%), Gaps = 35/431 (8%)

Query: 110 LVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRG 169
           L+ SL +   V   +++ + M       + +    M+++ C  GR   A  +   M K G
Sbjct: 168 LLSSLVKANEVKMSYQVFDIMCHCGVTPDVYLFSTMVNAFCTGGRVDDAIELFRKMEKVG 227

Query: 170 LTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKAR 229
           + P++V+YN+I+HGLCK+G    A+Q  E+  +    PS  TY VL+ GL      ++A 
Sbjct: 228 VAPNVVTYNNIIHGLCKNGRLDEAFQFKEKMEKERVKPSLVTYGVLINGLVKLERFDEAN 287

Query: 230 KVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGF 289
            +L+ M  +       + N  +   C I N +  L +   M+     P+ +T N++I G+
Sbjct: 288 CILKEMSDRGYAPNNVVYNTLIDGYCRIGNISTALQIRDDMISNGISPNSVTCNSLIQGY 347

Query: 290 CKMGRIEEALKVLNDMVAG--------------KFC--------------------APDA 315
           CK  ++E A  +L +M+ G              + C                     P+ 
Sbjct: 348 CKSNQMEHAEHLLEEMLTGGGVINQGTFTSVIHRLCLKCRFDSALLFIMEMLLRNFKPND 407

Query: 316 VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN 375
              T ++ GL   G+  EA+ L Y+++ ++G++   VT NA++ GL      EEA ++  
Sbjct: 408 GLLTLLVSGLCQNGKQSEAIELWYRLL-EKGFAANTVTSNALIHGLCEAGSKEEAAKLLK 466

Query: 376 CMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG 435
            ML  G+V DS +Y  +I   C+  +++E  +  +++V      D Y Y  ++ GLC  G
Sbjct: 467 EMLERGLVLDSISYNTLILACCKEGKVEEGFKLKEEMVRRGIQPDMYTYNMLLHGLCNMG 526

Query: 436 KIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWR 495
           KI EA    +E   +G  P+   Y ++IDG CK +   E  ++ +EM    +  +AV + 
Sbjct: 527 KIEEAGGLWHECKKNGNFPDAYTYGIMIDGYCKANRVEEGEKLFQEMVTMKIEQNAVVYG 586

Query: 496 ILDKLHGNRGN 506
            L + +   GN
Sbjct: 587 TLIRAYCENGN 597



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 91/320 (28%), Positives = 149/320 (46%), Gaps = 41/320 (12%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C   +V E  KL  +M  RG  P++ +Y  L+HG C  G+++ A  ++ E +  G  P++
Sbjct: 488 CKEGKVEEGFKLKEEMVRRGIQPDMYTYNMLLHGLCNMGKIEEAGGLWHECKKNGNFPDA 547

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
            TY +++ G  +   VE    L F+    MK E+    N   +  L+ + C  G + E F
Sbjct: 548 YTYGIMIDGYCKANRVEEGEKL-FQEMVTMKIEQ----NAVVYGTLIRAYCENGNMREAF 602

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
           R+ +DM              +I  L   G    A++++  MRK GL+P++V Y +++ G 
Sbjct: 603 RLRDDMRSRGIPQTSATYSSLIHGLSNIGLVDSANQLLDEMRKEGLSPNVVCYTALIGGY 662

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
           CK G   +   +L+E       P++ TY +++ G C   +++ A K+L  M  K  V   
Sbjct: 663 CKLGQMHKVDSILQEMSINNVHPNKITYTIMINGHCKLGNMKAAAKLLNEMAQKGIV--- 719

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
                                           PD +T N + NGFCK G++EEALKV + 
Sbjct: 720 --------------------------------PDAVTYNALTNGFCKEGKMEEALKVCDL 747

Query: 305 MVAGKFCAPDAVTFTTIIFG 324
           M  G   + D +T+TT+I G
Sbjct: 748 MSTGGI-SLDDITYTTLIDG 766


>gi|218191892|gb|EEC74319.1| hypothetical protein OsI_09597 [Oryza sativa Indica Group]
          Length = 1167

 Score =  235 bits (599), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 146/497 (29%), Positives = 242/497 (48%), Gaps = 7/497 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C +     A K+  +M+ RG   N V+Y  LI G CR+G ++ A+    +M   G+
Sbjct: 124 IEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGL 183

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P+  TY  L+ G+ ++R    A  L+    + M   E L  N   +ANL+D   REG  
Sbjct: 184 VPDGFTYGALINGLCKSRRSNEAKALL----DEMSCAE-LKPNVVVYANLIDGFMREGNA 238

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E F++ ++M        +    +++  LC+ G+   AS ++  M +    P  ++YN I
Sbjct: 239 DEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLI 298

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G  +H     A++LL E    G  P+ +TY +++ GLC   + EKA  +L+ M +K  
Sbjct: 299 IEGHFRHHNKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGL 358

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                +    +   C   N +    +   M +    PD+   N++I G  K+GR+EE+ K
Sbjct: 359 KPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTK 418

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
               M   +   P+  T++ +I G L  G ++ A  L+ Q M   G  P  V Y  +L  
Sbjct: 419 YFAQM-QERGLLPNEFTYSGLIHGYLKNGDLESAEQLV-QRMLDTGLKPNDVIYIDLLES 476

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
            F+   +E+    F  ML  GV+ D+  Y I+I  L  S  ++ A R   +I    ++ D
Sbjct: 477 YFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEIEKNGSVPD 536

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
            +VY+++I GLC++    +A   L E+   GV PNIVCYN +IDG CK      A  +  
Sbjct: 537 VHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFN 596

Query: 481 EMRKNGLNPDAVTWRIL 497
            +   GL P+ VT+  L
Sbjct: 597 SILAKGLVPNCVTYTSL 613



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 142/528 (26%), Positives = 239/528 (45%), Gaps = 43/528 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   R  EA  L  +M      PNVV Y  LI G+ R G  D A+K+  EM   GV
Sbjct: 194 INGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGV 253

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLM-------------------------------FK 89
            PN +TY  LVRG+ +   ++RA++L+                               F+
Sbjct: 254 QPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHNKKDAFR 313

Query: 90  LWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSL 149
           L   M E   +S N   ++ ++  LC+ G   +   + E+M         F    +I   
Sbjct: 314 LLSEM-ENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGY 372

Query: 150 CRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSE 209
           CR G    A  +   M K  + P L  YNS++ GL K G    + +   +  + G LP+E
Sbjct: 373 CREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNE 432

Query: 210 HTYKVLVEGLCGESDLEKARKVLQFML----SKKDVDRTRICNIYLRALCLIKNPTELLN 265
            TY  L+ G     DLE A +++Q ML       DV    +   Y ++     +  ++ +
Sbjct: 433 FTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKS----DDIEKVSS 488

Query: 266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 325
               ML      D      +I+     G +E A +VL++ +      PD   ++++I GL
Sbjct: 489 TFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSE-IEKNGSVPDVHVYSSLISGL 547

Query: 326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 385
                 ++A  +L + M ++G  P IV YNA++ GL +   +  A+ VFN +L  G+V +
Sbjct: 548 CKTADREKAFGILDE-MSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPN 606

Query: 386 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY 445
             TY  +IDG C+   +  A   +++++      D +VY+ +  G   +G + +A+  + 
Sbjct: 607 CVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIE 666

Query: 446 ELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVT 493
           E+   G   +I  +N ++DG CK    +E  ++L  +   GL P+A+T
Sbjct: 667 EMFLRG-HASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALT 713



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 120/481 (24%), Positives = 234/481 (48%), Gaps = 8/481 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC + ++  A  L   M    H P+ ++Y  +I G+ R      A+++  EM + G+ PN
Sbjct: 267 LCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHNKKDAFRLLSEMENAGISPN 326

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             TYS+++ G+ ++ + E+A+ L+ ++  +      L  N   +A L+   CREG V+  
Sbjct: 327 VYTYSIMIHGLCQSGEPEKASDLLEEMTTK-----GLKPNAFVYAPLISGYCREGNVSLA 381

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             I + M +   + + +    +I  L + GR   +++    M++RGL P+  +Y+ ++HG
Sbjct: 382 CEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHG 441

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
             K+G    A QL++  +  G  P++  Y  L+E      D+EK     + ML +  +  
Sbjct: 442 YLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLD 501

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
            RI  I +  L    N      VL  + +    PDV   +++I+G CK    E+A  +L+
Sbjct: 502 NRIYGILIHNLSSSGNMEAAFRVLSEIEKNGSVPDVHVYSSLISGLCKTADREKAFGILD 561

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           +M + K   P+ V +  +I GL   G I  A N+   ++  +G  P  VTY +++ G  +
Sbjct: 562 EM-SKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSIL-AKGLVPNCVTYTSLIDGSCK 619

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
           +  +  A  ++N ML  G+  D+  Y+++  G   +  L++A    +++    +   +  
Sbjct: 620 VGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHASISS- 678

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           +  ++ G C+ GK+ E +  L+ ++  G+ PN +    +I G  +     E + I  E++
Sbjct: 679 FNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQ 738

Query: 484 K 484
           +
Sbjct: 739 Q 739



 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 122/498 (24%), Positives = 230/498 (46%), Gaps = 42/498 (8%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           RV +A ++   M+ RG  P++     L+    R   M + +KV + M   G+ P+  TYS
Sbjct: 62  RVQDAAEVVLMMRDRGLAPSIRCCNALLKDLLRADAMALLWKVREFMVGAGISPDVYTYS 121

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
            L+    + R+ + A  ++ ++ ER        +N   +  L+  LCR G V E F   +
Sbjct: 122 TLIEAYCKVREFDTAKKVLVEMRER-----GCGLNTVTYNVLIAGLCRSGAVEEAFGFKK 176

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
           DM     V + F  G +I+ LC+S R++ A  ++  M    L P++V Y +++ G  + G
Sbjct: 177 DMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREG 236

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
               A+++++E +  G  P++ TY  LV GLC    +++A  +L+ M+  +D  R     
Sbjct: 237 NADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMV--RDSHR----- 289

Query: 249 IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 308
                                       PD IT N +I G  +    ++A ++L++M   
Sbjct: 290 ----------------------------PDTITYNLIIEGHFRHHNKKDAFRLLSEMENA 321

Query: 309 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE 368
              +P+  T++ +I GL   G  ++A +LL + M  +G  P    Y  ++ G  R   V 
Sbjct: 322 GI-SPNVYTYSIMIHGLCQSGEPEKASDLLEE-MTTKGLKPNAFVYAPLISGYCREGNVS 379

Query: 369 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI 428
            A E+F+ M  + V+ D   Y  +I GL +  +++E+ +++  +     + + + Y+ +I
Sbjct: 380 LACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLI 439

Query: 429 KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLN 488
            G  ++G +  A   +  ++D+G+ PN V Y  +++   K     +     + M   G+ 
Sbjct: 440 HGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVM 499

Query: 489 PDAVTWRILDKLHGNRGN 506
            D   + IL     + GN
Sbjct: 500 LDNRIYGILIHNLSSSGN 517



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 134/516 (25%), Positives = 236/516 (45%), Gaps = 42/516 (8%)

Query: 6   GLSRVGEAHK---LFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           GL + GE  K   L  +M ++G  PN   Y  LI GYCR G + +A ++FD+M    VLP
Sbjct: 336 GLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLP 395

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           +   Y+ L+ G+ +   VE +     ++ ER      L  N   ++ L+    + G +  
Sbjct: 396 DLYCYNSLIFGLSKVGRVEESTKYFAQMQER-----GLLPNEFTYSGLIHGYLKNGDLES 450

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
             ++ + M        +     +++S  +S      S     M  +G+      Y  ++H
Sbjct: 451 AEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIH 510

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
            L   G    A+++L E  + G +P  H Y  L+ GLC  +D EKA  +L  M SKK VD
Sbjct: 511 NLSSSGNMEAAFRVLSEIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEM-SKKGVD 569

Query: 243 RTRIC-NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
              +C N  +  LC   + +   NV   +L     P+ +T  ++I+G CK+G I  A  +
Sbjct: 570 PNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYL 629

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
            N+M+A     PDA  ++ +  G  + G +++A+  L + M  RG++  I ++N ++ G 
Sbjct: 630 YNEMLATGI-TPDAFVYSVLTTGCSSAGDLEQAM-FLIEEMFLRGHA-SISSFNNLVDGF 686

Query: 362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE---------------AK 406
            +  +++E  ++ + ++G G+V ++ T   +I GL E+ +L E               A 
Sbjct: 687 CKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAA 746

Query: 407 RFWDDIVW--------PSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVC 458
           R +  +          P ++ D+     MI+  C+ G + +A+     +V          
Sbjct: 747 RHFSSLFMDMINQGKIPLDVVDD-----MIRDHCKEGNLDKALMLRDVIVAKSAPMGCSS 801

Query: 459 YNVVIDGACKLSMKREAYQILREMRKNG-LNPDAVT 493
           Y  ++D  C+     EA  +L+EM K G L P  V 
Sbjct: 802 YLAIVDNLCRKGKLSEALNLLKEMDKRGNLQPTLVA 837



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 85/295 (28%), Positives = 143/295 (48%), Gaps = 4/295 (1%)

Query: 208 SEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVL 267
           S     VLV+       ++ A +V+  M  +      R CN  L+ L        L  V 
Sbjct: 46  SPAVLDVLVDTYKKSGRVQDAAEVVLMMRDRGLAPSIRCCNALLKDLLRADAMALLWKVR 105

Query: 268 VFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLN 327
            FM+     PDV T +T+I  +CK+   + A KVL +M   + C  + VT+  +I GL  
Sbjct: 106 EFMVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRE-RGCGLNTVTYNVLIAGLCR 164

Query: 328 VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADST 387
            G ++EA     + M   G  P   TY A++ GL + RR  EAK + + M    +  +  
Sbjct: 165 SGAVEEAFG-FKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVV 223

Query: 388 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYEL 447
            YA +IDG       DEA +   ++V      +   Y  +++GLC+ G++  A   L ++
Sbjct: 224 VYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQM 283

Query: 448 VDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
           V     P+ + YN++I+G  +   K++A+++L EM   G++P+  T+ I+  +HG
Sbjct: 284 VRDSHRPDTITYNLIIEGHFRHHNKKDAFRLLSEMENAGISPNVYTYSIM--IHG 336



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 83/366 (22%), Positives = 150/366 (40%), Gaps = 98/366 (26%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    +  A  +F  + ++G VPN V+YT+LI G C+ G++  A+ +++EM   G+
Sbjct: 579 IDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGI 638

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P++  YSVL  G     D+E+A  L+ +++ R         + ++F NLVD  C+ G +
Sbjct: 639 TPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGH------ASISSFNNLVDGFCKRGKM 692

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E  ++                                   ++V+  RGL P+ ++  +I
Sbjct: 693 QETLKL-----------------------------------LHVIMGRGLVPNALTIENI 717

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GL                 + G L   HT  V ++    ES       +   M+++  
Sbjct: 718 ISGLS----------------EAGKLSEVHTIFVELQQKTSESAARHFSSLFMDMINQGK 761

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           +                      L+V+  M++  C               K G +++AL 
Sbjct: 762 IP---------------------LDVVDDMIRDHC---------------KEGNLDKAL- 784

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +L D++  K       ++  I+  L   G++ EALNLL ++  +    P +V     L G
Sbjct: 785 MLRDVIVAKSAPMGCSSYLAIVDNLCRKGKLSEALNLLKEMDKRGNLQPTLVA----LLG 840

Query: 361 LFRLRR 366
           +F  RR
Sbjct: 841 IFWFRR 846


>gi|302783901|ref|XP_002973723.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
 gi|300158761|gb|EFJ25383.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
          Length = 581

 Score =  234 bits (598), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 144/499 (28%), Positives = 260/499 (52%), Gaps = 13/499 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   +V EA ++  +M  +G  P+V +YT ++   CR G++D A ++F +M   G   N
Sbjct: 20  LCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGKVDEADELFHKMIERGCSAN 79

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           ++ Y+ L+ G+ +  ++ERA    +KL E M  +     +N  +  ++  LCR G V+E 
Sbjct: 80  TVAYNALINGLCKDENIERA----YKLLEEMASK-GYEPDNITYNTILSGLCRMGKVSEA 134

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVM--RKRGLTPSLVSYNSIV 181
            +  + MP      +  A   ++D+L + G+   A  +   M    R + P L++YN+++
Sbjct: 135 KQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRKVAPDLITYNTLI 194

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
            G C+      A +L ++ I  GY+P   TY  ++ GL  +S++++A ++ + M+     
Sbjct: 195 DGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVDSGCA 254

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
                 +I L   C + N    L +   M + +  PDV+  N VI+  CK  ++++A KV
Sbjct: 255 PNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAKKVDDAHKV 314

Query: 302 LNDMVAGKFCA-PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           L +M   K  A PD VT+  ++ GL     + +A + L+  M   G +P IV+Y+ VL G
Sbjct: 315 LEEM--SKIGAVPDVVTYNILLDGLCKTNLVDKA-HELFSTMVDNGCAPDIVSYSVVLNG 371

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L +  +V +A+ +F+ M+   +V D  T+ I++DGLC++ +LDEAK   D +   + + D
Sbjct: 372 LCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDVMSEHNVLPD 431

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
                 ++ GLCR  +  EAV     +V+ G   +++ +N+V+ G C+     +A    +
Sbjct: 432 GVTCTTLMHGLCRDKRTDEAVRLFQYMVEKGTVADVLPHNIVLAGLCREGKLAQALLFFK 491

Query: 481 EMRKNG--LNPDAVTWRIL 497
            M K+    +PD VT+  L
Sbjct: 492 SMVKSDGEFSPDVVTYTTL 510



 Score =  231 bits (590), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 139/501 (27%), Positives = 254/501 (50%), Gaps = 11/501 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D+LC   +V EA +LF  M  RG   N V+Y  LI+G C+   ++ AYK+ +EM   G 
Sbjct: 52  VDRLCRAGKVDEADELFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGY 111

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+++TY+ ++ G+ R   V  A      +  R       S +  A+  L+D+L +EG V
Sbjct: 112 EPDNITYNTILSGLCRMGKVSEAKQFFDSMPSR-----GYSPDVVAYNGLLDALYKEGKV 166

Query: 121 NEVFRIAE--DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
            E + + +  DM   K   +      +ID  CR  +   A ++   +  +G  P  V+YN
Sbjct: 167 AEAWGLFKTMDMADRKVAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYN 226

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
           SI+ GL +      A ++ ++ +  G  P+  TY +++ G C   ++ +  ++ + M  K
Sbjct: 227 SILLGLARKSNMDEAEEMFKKMVDSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEK 286

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
           +      +CN  +  LC  K   +   VL  M +    PDV+T N +++G CK   +++A
Sbjct: 287 RFSPDVLLCNAVIDMLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKA 346

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
            ++ + MV    CAPD V+++ ++ GL    ++ +A  +L+  M +R   P +VT+N ++
Sbjct: 347 HELFSTMVDNG-CAPDIVSYSVVLNGLCKTNKVHDA-RVLFDRMIERKLVPDVVTFNILM 404

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
            GL +  +++EAK++ + M    V+ D  T   ++ GLC   + DEA R +  +V    +
Sbjct: 405 DGLCKAGKLDEAKDLLDVMSEHNVLPDGVTCTTLMHGLCRDKRTDEAVRLFQYMVEKGTV 464

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELV--DSGVTPNIVCYNVVIDGACKLSMKREAY 476
            D   +  ++ GLCR GK+ +A+ F   +V  D   +P++V Y  +++   +     +A 
Sbjct: 465 ADVLPHNIVLAGLCREGKLAQALLFFKSMVKSDGEFSPDVVTYTTLVNALIEAGRVDQAV 524

Query: 477 QILREMRKNGLNPDAVTWRIL 497
              ++M  +G  PD V +  L
Sbjct: 525 DYFQQMTGSGCAPDYVAYNTL 545



 Score =  215 bits (547), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 131/443 (29%), Positives = 226/443 (51%), Gaps = 41/443 (9%)

Query: 97  EEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMI-DSLCRSGRN 155
           E+    +   ++ ++  LC+ G V E   + E+M + K VN + A   +I D LCR+G+ 
Sbjct: 3   EKGFEPDVVTYSTIISGLCKTGKVTEALEMVEEMTE-KGVNPDVATYTIIVDRLCRAGKV 61

Query: 156 HGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVL 215
             A  + + M +RG + + V+YN++++GLCK     RAY+LLEE    GY P   TY  +
Sbjct: 62  DEADELFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNTI 121

Query: 216 VEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVL--VFMLQT 273
           + GLC    + +A++    M S+         N  L AL       E   +   + M   
Sbjct: 122 LSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADR 181

Query: 274 QCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQE 333
           +  PD+IT NT+I+GFC++ + +EA+K+  D++A  +  PD VT+ +I+ GL     + E
Sbjct: 182 KVAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGY-MPDTVTYNSILLGLARKSNMDE 240

Query: 334 ALNL----------------------------------LYQVMPQRGYSPGIVTYNAVLR 359
           A  +                                  LY+ M ++ +SP ++  NAV+ 
Sbjct: 241 AEEMFKKMVDSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVID 300

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
            L + ++V++A +V   M  IG V D  TY I++DGLC++N +D+A   +  +V      
Sbjct: 301 MLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAP 360

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           D   Y+ ++ GLC++ K+H+A      +++  + P++V +N+++DG CK     EA  +L
Sbjct: 361 DIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLL 420

Query: 480 REMRKNGLNPDAVTWRILDKLHG 502
             M ++ + PD VT   L  +HG
Sbjct: 421 DVMSEHNVLPDGVTCTTL--MHG 441



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 114/411 (27%), Positives = 206/411 (50%), Gaps = 9/411 (2%)

Query: 1   MDQLCGLSRVGEAHKLF--FDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHC 58
           +D L    +V EA  LF   DM  R   P++++Y TLI G+CR  + D A K+F ++   
Sbjct: 157 LDALYKEGKVAEAWGLFKTMDMADRKVAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAK 216

Query: 59  GVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREG 118
           G +P+++TY+ ++ G+ R  +++ A  +  K+ +        + N A ++ ++   CR G
Sbjct: 217 GYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVD-----SGCAPNGATYSIVLSGHCRVG 271

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
            +     + E+M + +   +   C  +ID LC++ +   A +V+  M K G  P +V+YN
Sbjct: 272 NMARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAKKVDDAHKVLEEMSKIGAVPDVVTYN 331

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
            ++ GLCK     +A++L    +  G  P   +Y V++ GLC  + +  AR +   M+ +
Sbjct: 332 ILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIER 391

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
           K V      NI +  LC      E  ++L  M +    PD +T  T+++G C+  R +EA
Sbjct: 392 KLVPDVVTFNILMDGLCKAGKLDEAKDLLDVMSEHNVLPDGVTCTTLMHGLCRDKRTDEA 451

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG-YSPGIVTYNAV 357
           +++   MV  K    D +    ++ GL   G++ +AL     ++   G +SP +VTY  +
Sbjct: 452 VRLFQYMVE-KGTVADVLPHNIVLAGLCREGKLAQALLFFKSMVKSDGEFSPDVVTYTTL 510

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRF 408
           +  L    RV++A + F  M G G   D   Y  +++GL +  +  +A R 
Sbjct: 511 VNALIEAGRVDQAVDYFQQMTGSGCAPDYVAYNTLMNGLRKQGRHIQADRL 561



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/274 (28%), Positives = 131/274 (47%), Gaps = 39/274 (14%)

Query: 270 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG 329
           M +   +PDV+T +T+I+G CK G++ EAL+++ +M   K   PD  T+T I+  L   G
Sbjct: 1   MAEKGFEPDVVTYSTIISGLCKTGKVTEALEMVEEMTE-KGVNPDVATYTIIVDRLCRAG 59

Query: 330 RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTY 389
           ++ EA  L ++ M +RG S   V YNA++ GL +   +E A ++   M   G   D+ TY
Sbjct: 60  KVDEADELFHK-MIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITY 118

Query: 390 AIVIDGLCESNQLDEAKRFWD---------DIVWPSNIHDNY------------------ 422
             ++ GLC   ++ EAK+F+D         D+V  + + D                    
Sbjct: 119 NTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDM 178

Query: 423 ----------VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMK 472
                      Y  +I G CR  K  EA+    +++  G  P+ V YN ++ G  + S  
Sbjct: 179 ADRKVAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNM 238

Query: 473 REAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
            EA ++ ++M  +G  P+  T+ I+   H   GN
Sbjct: 239 DEAEEMFKKMVDSGCAPNGATYSIVLSGHCRVGN 272


>gi|262316879|emb|CAZ44328.1| restoring pentatricopeptide repeat protein homologue [Raphanus
           sativus]
          Length = 681

 Score =  234 bits (597), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 143/502 (28%), Positives = 252/502 (50%), Gaps = 19/502 (3%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   RV EA  LF  M      PNVV++TTL++G CR G +  A  + D M   G+ PN
Sbjct: 157 LCVEDRVSEALDLFHQMCR----PNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPN 212

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY  +V G+ +  D   A      L  +M+E   +  N   ++ ++D L ++G  ++ 
Sbjct: 213 QITYGTIVDGMCKIGDTVSA----LNLLRKMEEMSHIKPNVVIYSAIIDGLWKDGRHSDA 268

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             +  +M +     + F    MID  C SGR   A R++  M +R + P++V+Y+++++ 
Sbjct: 269 HNLYTEMQEKGIFPDLFTYNCMIDGFCSSGRWSEAQRLLQEMLERKINPNVVTYSALINA 328

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
             K      A +L +E +  G +P+  TY  +++G C ++ L+ A  +   M +K     
Sbjct: 329 YVKERKFFEAEELYDEMLPRGIIPNTITYNSMIDGFCKQNRLDAAEHMFYVMATKGCSPD 388

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               N  +   C  K   +   +L  M +T    D  T NT+I+GFC +G +  AL +  
Sbjct: 389 VFTFNTLIDGYCGAKRIDDGTELLHEMTETGLVADTTTYNTLIHGFCLVGDLNAALDLSQ 448

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVM----------PQRGYSPGIVT 353
            M++   C PD VT  T++ GL + G++++AL +   +           P  G  P + T
Sbjct: 449 QMISSGVC-PDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASRPFNGVEPDVQT 507

Query: 354 YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413
           YN ++ GL    +  EA+E++  M   G+V ++ TY+ +I+GLC+ ++LDEA + +D + 
Sbjct: 508 YNILISGLINEGKFLEAEELYKEMPHRGIVPNTITYSSMINGLCKQSRLDEATQMFDSMG 567

Query: 414 WPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKR 473
             S   D   +  ++ G C++G++ + +    E+   G+  + + Y  +I G  K+    
Sbjct: 568 SKSFSPDVVTFNTLVSGYCKAGRVDDGLELFCEMGRRGIVADAITYITLIHGFRKVGNIN 627

Query: 474 EAYQILREMRKNGLNPDAVTWR 495
            A  I +EM  +G+ PD +T R
Sbjct: 628 GALDIFQEMISSGVYPDTITIR 649



 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 141/492 (28%), Positives = 228/492 (46%), Gaps = 32/492 (6%)

Query: 23  RGHVP-NVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVE 81
           R  +P +V S+  LI  +C   ++  A   F ++   G  P+ +T+S L+ G+     V 
Sbjct: 105 RKQIPCDVYSFNILIKCFCSCSKLPFALSTFGKITKLGFQPDVVTFSTLLHGLCVEDRVS 164

Query: 82  RANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFA 141
            A      L+ +M        N   F  L++ LCREG V E   + + M +      +  
Sbjct: 165 EA----LDLFHQMCRP-----NVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQIT 215

Query: 142 CGHMIDSLCRSGRNHGASRVVYVMRKRG-LTPSLVSYNSIVHGLCKHGGCMRAYQLLEEG 200
            G ++D +C+ G    A  ++  M +   + P++V Y++I+ GL K G    A+ L  E 
Sbjct: 216 YGTIVDGMCKIGDTVSALNLLRKMEEMSHIKPNVVIYSAIIDGLWKDGRHSDAHNLYTEM 275

Query: 201 IQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD----VDRTRICNIYLRALCL 256
            + G  P   TY  +++G C      +A+++LQ ML +K     V  + + N Y++    
Sbjct: 276 QEKGIFPDLFTYNCMIDGFCSSGRWSEAQRLLQEMLERKINPNVVTYSALINAYVKERKF 335

Query: 257 IKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAV 316
            +   EL +    ML     P+ IT N++I+GFCK  R++ A  +   M A K C+PD  
Sbjct: 336 FE-AEELYDE---MLPRGIIPNTITYNSMIDGFCKQNRLDAAEHMFYVM-ATKGCSPDVF 390

Query: 317 TFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNC 376
           TF T+I G     RI +   LL++ M + G      TYN ++ G   +  +  A ++   
Sbjct: 391 TFNTLIDGYCGAKRIDDGTELLHE-MTETGLVADTTTYNTLIHGFCLVGDLNAALDLSQQ 449

Query: 377 MLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD---------DIVWPSN--IHDNYVYA 425
           M+  GV  D  T   ++DGLC++ +L +A   +          D   P N    D   Y 
Sbjct: 450 MISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASRPFNGVEPDVQTYN 509

Query: 426 AMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN 485
            +I GL   GK  EA     E+   G+ PN + Y+ +I+G CK S   EA Q+   M   
Sbjct: 510 ILISGLINEGKFLEAEELYKEMPHRGIVPNTITYSSMINGLCKQSRLDEATQMFDSMGSK 569

Query: 486 GLNPDAVTWRIL 497
             +PD VT+  L
Sbjct: 570 SFSPDVVTFNTL 581



 Score =  191 bits (486), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 124/473 (26%), Positives = 224/473 (47%), Gaps = 27/473 (5%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVF---DEMRH 57
           M+ LC   RV EA  L   M   G  PN ++Y T++ G C+ G+   A  +    +EM H
Sbjct: 185 MNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKIGDTVSALNLLRKMEEMSH 244

Query: 58  CGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEE---EDLSVNNAAFANLVDSL 114
             + PN + YS ++ G+ +      A+     L+  M+E+    DL   N     ++D  
Sbjct: 245 --IKPNVVIYSAIIDGLWKDGRHSDAH----NLYTEMQEKGIFPDLFTYNC----MIDGF 294

Query: 115 CREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSL 174
           C  G  +E  R+ ++M + K          +I++  +  +   A  +   M  RG+ P+ 
Sbjct: 295 CSSGRWSEAQRLLQEMLERKINPNVVTYSALINAYVKERKFFEAEELYDEMLPRGIIPNT 354

Query: 175 VSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQF 234
           ++YNS++ G CK      A  +       G  P   T+  L++G CG   ++   ++L  
Sbjct: 355 ITYNSMIDGFCKQNRLDAAEHMFYVMATKGCSPDVFTFNTLIDGYCGAKRIDDGTELLHE 414

Query: 235 MLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGR 294
           M     V  T   N  +   CL+ +    L++   M+ +   PD++T NT+++G C  G+
Sbjct: 415 MTETGLVADTTTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGK 474

Query: 295 IEEALKVLNDMVAGKF----------CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ 344
           +++AL++   M   K             PD  T+  +I GL+N G+  EA   LY+ MP 
Sbjct: 475 LKDALEMFKAMQKSKMDLDASRPFNGVEPDVQTYNILISGLINEGKFLEA-EELYKEMPH 533

Query: 345 RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 404
           RG  P  +TY++++ GL +  R++EA ++F+ M       D  T+  ++ G C++ ++D+
Sbjct: 534 RGIVPNTITYSSMINGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLVSGYCKAGRVDD 593

Query: 405 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIV 457
               + ++     + D   Y  +I G  + G I+ A+    E++ SGV P+ +
Sbjct: 594 GLELFCEMGRRGIVADAITYITLIHGFRKVGNINGALDIFQEMISSGVYPDTI 646



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 124/498 (24%), Positives = 229/498 (45%), Gaps = 58/498 (11%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           +A  LF DM     +P+V+ +  L+    R    D+   ++ +M    +  +  ++++L+
Sbjct: 60  DAIDLFSDMVRSRPLPSVIDFNKLMGVVVRMERPDLVISLYQKMERKQIPCDVYSFNILI 119

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP 131
           +       +  A +  F    ++  + D+      F+ L+  LC E  V+E   +   M 
Sbjct: 120 KCFCSCSKLPFA-LSTFGKITKLGFQPDV----VTFSTLLHGLCVEDRVSEALDLFHQMC 174

Query: 132 QGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCM 191
           +   V        +++ LCR GR   A  ++  M + GL P+ ++Y +IV G+CK G  +
Sbjct: 175 RPNVV----TFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKIGDTV 230

Query: 192 RAYQLLEEGIQFGYL-PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIY 250
            A  LL +  +  ++ P+   Y  +++GL                   KD   +   N+Y
Sbjct: 231 SALNLLRKMEEMSHIKPNVVIYSAIIDGLW------------------KDGRHSDAHNLY 272

Query: 251 LRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKF 310
                     TE+    +F       PD+ T N +I+GFC  GR  EA ++L +M+  K 
Sbjct: 273 ----------TEMQEKGIF-------PDLFTYNCMIDGFCSSGRWSEAQRLLQEMLERKI 315

Query: 311 CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEA 370
             P+ VT++ +I   +   +  EA  L  +++P RG  P  +TYN+++ G  +  R++ A
Sbjct: 316 -NPNVVTYSALINAYVKERKFFEAEELYDEMLP-RGIIPNTITYNSMIDGFCKQNRLDAA 373

Query: 371 KEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKG 430
           + +F  M   G   D  T+  +IDG C + ++D+      ++     + D   Y  +I G
Sbjct: 374 EHMFYVMATKGCSPDVFTFNTLIDGYCGAKRIDDGTELLHEMTETGLVADTTTYNTLIHG 433

Query: 431 LCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK------ 484
            C  G ++ A+    +++ SGV P+IV  N ++DG C     ++A ++ + M+K      
Sbjct: 434 FCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLD 493

Query: 485 -----NGLNPDAVTWRIL 497
                NG+ PD  T+ IL
Sbjct: 494 ASRPFNGVEPDVQTYNIL 511



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 109/423 (25%), Positives = 196/423 (46%), Gaps = 18/423 (4%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D L    R  +AH L+ +M+ +G  P++ +Y  +I G+C +G    A ++  EM    +
Sbjct: 256 IDGLWKDGRHSDAHNLYTEMQEKGIFPDLFTYNCMIDGFCSSGRWSEAQRLLQEMLERKI 315

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +TYS L+   ++ R    A  L  ++  R      +  N   + +++D  C++  +
Sbjct: 316 NPNVVTYSALINAYVKERKFFEAEELYDEMLPR-----GIIPNTITYNSMIDGFCKQNRL 370

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +    +   M       + F    +ID  C + R    + +++ M + GL     +YN++
Sbjct: 371 DAAEHMFYVMATKGCSPDVFTFNTLIDGYCGAKRIDDGTELLHEMTETGLVADTTTYNTL 430

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFML-SKK 239
           +HG C  G    A  L ++ I  G  P   T   L++GLC    L+ A ++ + M  SK 
Sbjct: 431 IHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKM 490

Query: 240 DVDRTR----------ICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGF 289
           D+D +R            NI +  L       E   +   M      P+ IT +++ING 
Sbjct: 491 DLDASRPFNGVEPDVQTYNILISGLINEGKFLEAEELYKEMPHRGIVPNTITYSSMINGL 550

Query: 290 CKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSP 349
           CK  R++EA ++ + M +  F +PD VTF T++ G    GR+ + L L  + M +RG   
Sbjct: 551 CKQSRLDEATQMFDSMGSKSF-SPDVVTFNTLVSGYCKAGRVDDGLELFCE-MGRRGIVA 608

Query: 350 GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFW 409
             +TY  ++ G  ++  +  A ++F  M+  GV  D+ T   ++  L    +L  A    
Sbjct: 609 DAITYITLIHGFRKVGNINGALDIFQEMISSGVYPDTITIRSMLTVLWSKEELKRAVAML 668

Query: 410 DDI 412
           +D+
Sbjct: 669 EDL 671



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 113/216 (52%), Gaps = 8/216 (3%)

Query: 287 NGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
           +GF ++  +E+A+ + +DMV  +   P  + F  ++  ++ + R    ++ LYQ M ++ 
Sbjct: 50  SGFHEIKGLEDAIDLFSDMVRSR-PLPSVIDFNKLMGVVVRMERPDLVIS-LYQKMERKQ 107

Query: 347 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
               + ++N +++      ++  A   F  +  +G   D  T++ ++ GLC  +++ EA 
Sbjct: 108 IPCDVYSFNILIKCFCSCSKLPFALSTFGKITKLGFQPDVVTFSTLLHGLCVEDRVSEAL 167

Query: 407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466
             +  +  P+ +     +  ++ GLCR G++ EAV  L  +V+ G+ PN + Y  ++DG 
Sbjct: 168 DLFHQMCRPNVV----TFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGM 223

Query: 467 CKLSMKREAYQILREMRK-NGLNPDAVTWR-ILDKL 500
           CK+     A  +LR+M + + + P+ V +  I+D L
Sbjct: 224 CKIGDTVSALNLLRKMEEMSHIKPNVVIYSAIIDGL 259



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 50/90 (55%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C   RV +  +LF +M  RG V + ++Y TLIHG+ + G ++ A  +F EM   GV P++
Sbjct: 586 CKAGRVDDGLELFCEMGRRGIVADAITYITLIHGFRKVGNINGALDIFQEMISSGVYPDT 645

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERM 94
           +T   ++  +    +++RA  ++  L   M
Sbjct: 646 ITIRSMLTVLWSKEELKRAVAMLEDLQMSM 675


>gi|221554580|gb|ACM24117.1| PPR protein [Raphanus sativus]
          Length = 688

 Score =  234 bits (597), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 141/502 (28%), Positives = 251/502 (50%), Gaps = 15/502 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   RV EA   F  M      PNVV++TTL++G CR G +  A  + D M   G+ P 
Sbjct: 159 LCVEDRVSEALDFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPT 218

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY  +V G+ +  D   A      L  +M+E   +  N   ++ ++DSLC++G  ++ 
Sbjct: 219 QITYGTIVDGMCKKGDTVSA----LNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDA 274

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             +  +M +     + F    MI   C SGR   A +++  M +R ++P +V+YN++++ 
Sbjct: 275 QNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINA 334

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
             K G    A +L +E +  G +P+  TY  +++G C +  L+ A  +   M +K     
Sbjct: 335 FVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPD 394

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                  +   C  K   + + +L  M +     + +T NT+I+GFC +G +  AL +  
Sbjct: 395 VFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQ 454

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVM----------PQRGYSPGIVT 353
            M++   C PD VT  T++ GL + G++++AL +   +           P  G  P ++T
Sbjct: 455 QMISSGVC-PDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLT 513

Query: 354 YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413
           YN ++ GL    +  EA+E++  M   G+V D+ TY+ +IDGLC+ ++LDEA + +  + 
Sbjct: 514 YNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMG 573

Query: 414 WPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKR 473
             S   +   +  +I G C++G++ + +    E+   G+  + + Y  +I G  K+    
Sbjct: 574 SKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNIN 633

Query: 474 EAYQILREMRKNGLNPDAVTWR 495
            A  I +EM  +G+ PD +T R
Sbjct: 634 GALDIFQEMISSGVYPDTITIR 655



 Score =  207 bits (526), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 142/506 (28%), Positives = 229/506 (45%), Gaps = 54/506 (10%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C  S++  A   F  +   G  P+VV++TTL+HG C    +  A   F +M      PN
Sbjct: 124 FCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFETTCRPN 183

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +T++ L+ G+ R   +  A  L+    +RM E+  L      +  +VD +C++G     
Sbjct: 184 VVTFTTLMNGLCREGRIVEAVALL----DRMMED-GLQPTQITYGTIVDGMCKKGDTVSA 238

Query: 124 FRIAEDMPQGKSVNEEFAC-GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
             +   M +   +         +IDSLC+ GR+  A  +   M+++G+ P L +YNS++ 
Sbjct: 239 LNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIV 298

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           G C  G    A QLL+E ++    P   TY  L+     E    +A ++   ML +  + 
Sbjct: 299 GFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAAELYDEMLPRGII- 357

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
                                             P+ IT N++I+GFCK  R++ A  + 
Sbjct: 358 ----------------------------------PNTITYNSMIDGFCKQDRLDAAEDMF 383

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
             ++A K C+PD  TFTT+I G     RI + + LL++ MP+RG     VTYN ++ G  
Sbjct: 384 Y-LMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHE-MPRRGLVANTVTYNTLIHGFC 441

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD---------DIV 413
            +  +  A ++   M+  GV  D  T   ++DGLC++ +L +A   +          D  
Sbjct: 442 LVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDAS 501

Query: 414 WPSN--IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSM 471
            P N    D   Y  +I GL   GK  EA     E+   G+ P+ + Y+ +IDG CK S 
Sbjct: 502 HPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSR 561

Query: 472 KREAYQILREMRKNGLNPDAVTWRIL 497
             EA Q+   M     +P+ VT+  L
Sbjct: 562 LDEATQMFVSMGSKSFSPNVVTFNTL 587



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 118/475 (24%), Positives = 231/475 (48%), Gaps = 19/475 (4%)

Query: 35  LIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERM 94
           L  G+     ++ A  +F +M     LP+ + +  L+  V+R   +ER + L+  L+++M
Sbjct: 50  LQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVR---MERPD-LVISLYQKM 105

Query: 95  KEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGR 154
            E + +  +  +F  L+   C    +         + +     +      ++  LC   R
Sbjct: 106 -ERKQIRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDR 164

Query: 155 NHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKV 214
              A    + M +    P++V++ ++++GLC+ G  + A  LL+  ++ G  P++ TY  
Sbjct: 165 VSEALDFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGT 224

Query: 215 LVEGLCGESDLEKARKVLQFMLSKKDV-DRTRICNIYLRALCLIKNPTELLNVLVFMLQT 273
           +V+G+C + D   A  +L+ M     +     I +  + +LC     ++  N+   M + 
Sbjct: 225 IVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEK 284

Query: 274 QCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQE 333
              PD+ T N++I GFC  GR  +A ++L +M+  K  +PD VT+  +I   +  G+  E
Sbjct: 285 GIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKI-SPDVVTYNALINAFVKEGKFFE 343

Query: 334 ALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVI 393
           A  L  +++P RG  P  +TYN+++ G  +  R++ A+++F  M   G   D  T+  +I
Sbjct: 344 AAELYDEMLP-RGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLI 402

Query: 394 DGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVT 453
           DG C + ++D+      ++     + +   Y  +I G C  G ++ A+    +++ SGV 
Sbjct: 403 DGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVC 462

Query: 454 PNIVCYNVVIDGACKLSMKREAYQILREMRK-----------NGLNPDAVTWRIL 497
           P+IV  N ++DG C     ++A ++ + M+K           NG+ PD +T+ IL
Sbjct: 463 PDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNIL 517



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/308 (29%), Positives = 149/308 (48%), Gaps = 10/308 (3%)

Query: 210 HTYKVLVEGLCGESDLEKAR----KVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 265
           +++ +L++  C  S L  A     K+ +  L    V  T +    L  LC+    +E L+
Sbjct: 115 YSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTL----LHGLCVEDRVSEALD 170

Query: 266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 325
               M +T C+P+V+T  T++NG C+ GRI EA+ +L+ M+      P  +T+ TI+ G+
Sbjct: 171 FFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGL-QPTQITYGTIVDGM 229

Query: 326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 385
              G    ALNLL ++       P +V Y+A++  L +  R  +A+ +F  M   G+  D
Sbjct: 230 CKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPD 289

Query: 386 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY 445
             TY  +I G C S +  +A++   +++      D   Y A+I    + GK  EA     
Sbjct: 290 LFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAAELYD 349

Query: 446 ELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL-DKLHGNR 504
           E++  G+ PN + YN +IDG CK      A  +   M   G +PD  T+  L D   G +
Sbjct: 350 EMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAK 409

Query: 505 GNDFGLRI 512
             D G+ +
Sbjct: 410 RIDDGMEL 417



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 86/347 (24%), Positives = 157/347 (45%), Gaps = 17/347 (4%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           EA +L+ +M  RG +PN ++Y ++I G+C+   +D A  +F  M   G  P+  T++ L+
Sbjct: 343 EAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLI 402

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP 131
            G    + ++    L+ ++  R      L  N   +  L+   C  G +N    +++ M 
Sbjct: 403 DGYCGAKRIDDGMELLHEMPRR-----GLVANTVTYNTLIHGFCLVGDLNAALDLSQQMI 457

Query: 132 QGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKR-----------GLTPSLVSYNSI 180
                 +   C  ++D LC +G+   A  +   M+K            G+ P +++YN +
Sbjct: 458 SSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNIL 517

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GL   G  + A +L EE    G +P   TY  +++GLC +S L++A ++   M SK  
Sbjct: 518 ICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSF 577

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                  N  +   C      + L +   M +     D I   T+I GF K+G I  AL 
Sbjct: 578 SPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALD 637

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGY 347
           +  +M++     PD +T   ++ G  +   ++ A+ +L  +    GY
Sbjct: 638 IFQEMISSGV-YPDTITIRNMLTGFWSKEELERAVAMLEDLQMSVGY 683


>gi|115471647|ref|NP_001059422.1| Os07g0300200 [Oryza sativa Japonica Group]
 gi|34394343|dbj|BAC84898.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50509027|dbj|BAD31989.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113610958|dbj|BAF21336.1| Os07g0300200 [Oryza sativa Japonica Group]
          Length = 1013

 Score =  234 bits (596), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 146/497 (29%), Positives = 241/497 (48%), Gaps = 7/497 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C +     A K+  +M+ RG   N V+Y  LI G CR+G ++ A+    +M   G+
Sbjct: 251 IEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGL 310

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P+  TY  L+ G+ ++R    A  L+    + M   E L  N   +ANL+D   REG  
Sbjct: 311 VPDGFTYGALINGLCKSRRSNEAKALL----DEMSCAE-LKPNVVVYANLIDGFMREGNA 365

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E F++ ++M        +    +++  LC+ G+   AS ++  M +    P  ++YN I
Sbjct: 366 DEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLI 425

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G  +H     A++LL E    G  P+ +TY +++ GLC   + EKA  +L+ M +K  
Sbjct: 426 IEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGL 485

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                +    +   C   N +    +   M +    PD+   N++I G  K+GR+EE+ K
Sbjct: 486 KPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTK 545

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
               M   +   P+  T++ +I G L  G ++ A  L+ Q M   G  P  V Y  +L  
Sbjct: 546 YFAQMQE-RGLLPNEFTYSGLIHGYLKNGDLESAEQLV-QRMLDTGLKPNDVIYIDLLES 603

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
            F+   +E+    F  ML  GV+ D+  Y I+I  L  S  ++ A R    I    ++ D
Sbjct: 604 YFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPD 663

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
            +VY+++I GLC++    +A   L E+   GV PNIVCYN +IDG CK      A  +  
Sbjct: 664 VHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFN 723

Query: 481 EMRKNGLNPDAVTWRIL 497
            +   GL P+ VT+  L
Sbjct: 724 SILAKGLVPNCVTYTSL 740



 Score =  195 bits (496), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 142/528 (26%), Positives = 238/528 (45%), Gaps = 43/528 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   R  EA  L  +M      PNVV Y  LI G+ R G  D A+K+  EM   GV
Sbjct: 321 INGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGV 380

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLM-------------------------------FK 89
            PN +TY  LVRG+ +   ++RA++L+                               F+
Sbjct: 381 QPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFR 440

Query: 90  LWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSL 149
           L   M E   +S N   ++ ++  LC+ G   +   + E+M         F    +I   
Sbjct: 441 LLSEM-ENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGY 499

Query: 150 CRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSE 209
           CR G    A  +   M K  + P L  YNS++ GL K G    + +   +  + G LP+E
Sbjct: 500 CREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNE 559

Query: 210 HTYKVLVEGLCGESDLEKARKVLQFMLS----KKDVDRTRICNIYLRALCLIKNPTELLN 265
            TY  L+ G     DLE A +++Q ML       DV    +   Y ++     +  ++ +
Sbjct: 560 FTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKS----DDIEKVSS 615

Query: 266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 325
               ML      D      +I+     G +E A +VL+  +      PD   ++++I GL
Sbjct: 616 TFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSG-IEKNGSVPDVHVYSSLISGL 674

Query: 326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 385
                 ++A  +L + M ++G  P IV YNA++ GL +   +  A+ VFN +L  G+V +
Sbjct: 675 CKTADREKAFGILDE-MSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPN 733

Query: 386 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY 445
             TY  +IDG C+   +  A   +++++      D +VY+ +  G   +G + +A+  + 
Sbjct: 734 CVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIE 793

Query: 446 ELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVT 493
           E+   G   +I  +N ++DG CK    +E  ++L  +   GL P+A+T
Sbjct: 794 EMFLRG-HASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALT 840



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 120/481 (24%), Positives = 234/481 (48%), Gaps = 8/481 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC + ++  A  L   M    H P+ ++Y  +I G+ R      A+++  EM + G+ PN
Sbjct: 394 LCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPN 453

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             TYS+++ G+ ++ + E+A+ L+ ++  +      L  N   +A L+   CREG V+  
Sbjct: 454 VYTYSIMIHGLCQSGEPEKASDLLEEMTTK-----GLKPNAFVYAPLISGYCREGNVSLA 508

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             I + M +   + + +    +I  L + GR   +++    M++RGL P+  +Y+ ++HG
Sbjct: 509 CEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHG 568

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
             K+G    A QL++  +  G  P++  Y  L+E      D+EK     + ML +  +  
Sbjct: 569 YLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLD 628

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
            RI  I +  L    N      VL  + +    PDV   +++I+G CK    E+A  +L+
Sbjct: 629 NRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILD 688

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           +M + K   P+ V +  +I GL   G I  A N+   ++  +G  P  VTY +++ G  +
Sbjct: 689 EM-SKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSIL-AKGLVPNCVTYTSLIDGSCK 746

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
           +  +  A  ++N ML  G+  D+  Y+++  G   +  L++A    +++    +   +  
Sbjct: 747 VGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHASISS- 805

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           +  ++ G C+ GK+ E +  L+ ++  G+ PN +    +I G  +     E + I  E++
Sbjct: 806 FNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQ 865

Query: 484 K 484
           +
Sbjct: 866 Q 866



 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 122/498 (24%), Positives = 230/498 (46%), Gaps = 42/498 (8%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           RV +A ++   M+ RG  P++     L+    R   M + +KV + M   G+ P+  TYS
Sbjct: 189 RVQDAAEVVLMMRDRGMAPSIRCCNALLKDLLRADAMALLWKVREFMVGAGISPDVYTYS 248

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
            L+    + R+ + A  ++ ++ ER        +N   +  L+  LCR G V E F   +
Sbjct: 249 TLIEAYCKVREFDTAKKVLVEMRER-----GCGLNTVTYNVLIAGLCRSGAVEEAFGFKK 303

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
           DM     V + F  G +I+ LC+S R++ A  ++  M    L P++V Y +++ G  + G
Sbjct: 304 DMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREG 363

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
               A+++++E +  G  P++ TY  LV GLC    +++A  +L+ M+  +D  R     
Sbjct: 364 NADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMV--RDSHR----- 416

Query: 249 IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 308
                                       PD IT N +I G  +    ++A ++L++M   
Sbjct: 417 ----------------------------PDTITYNLIIEGHFRHHSKKDAFRLLSEMENA 448

Query: 309 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE 368
              +P+  T++ +I GL   G  ++A +LL + M  +G  P    Y  ++ G  R   V 
Sbjct: 449 GI-SPNVYTYSIMIHGLCQSGEPEKASDLLEE-MTTKGLKPNAFVYAPLISGYCREGNVS 506

Query: 369 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI 428
            A E+F+ M  + V+ D   Y  +I GL +  +++E+ +++  +     + + + Y+ +I
Sbjct: 507 LACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLI 566

Query: 429 KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLN 488
            G  ++G +  A   +  ++D+G+ PN V Y  +++   K     +     + M   G+ 
Sbjct: 567 HGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVM 626

Query: 489 PDAVTWRILDKLHGNRGN 506
            D   + IL     + GN
Sbjct: 627 LDNRIYGILIHNLSSSGN 644



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 115/453 (25%), Positives = 218/453 (48%), Gaps = 28/453 (6%)

Query: 6   GLSRVG---EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           GLS+VG   E+ K F  M+ RG +PN  +Y+ LIHGY + G+++ A ++   M   G+ P
Sbjct: 533 GLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKP 592

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           N + Y  L+    ++ D+E+ +     + +     + + ++N  +  L+ +L   G +  
Sbjct: 593 NDVIYIDLLESYFKSDDIEKVSSTFKSMLD-----QGVMLDNRIYGILIHNLSSSGNMEA 647

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
            FR+   + +  SV +      +I  LC++     A  ++  M K+G+ P++V YN+++ 
Sbjct: 648 AFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALID 707

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           GLCK G    A  +    +  G +P+  TY  L++G C   D+  A  +   ML+     
Sbjct: 708 GLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITP 767

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
              + ++ L   C      E    L+  +  +    + + N +++GFCK G+++E LK+L
Sbjct: 768 DAFVYSV-LTTGCSSAGDLEQAMFLIEEMFLRGHASISSFNNLVDGFCKRGKMQETLKLL 826

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
           + ++ G+   P+A+T   II GL   G++ E ++ ++  + Q+        ++++   + 
Sbjct: 827 H-VIMGRGLVPNALTIENIISGLSEAGKLSE-VHTIFVELQQKTSESAARHFSSLFMDMI 884

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
              ++            + VV D      +I   C+   LD+A    D IV  S      
Sbjct: 885 NQGKIP-----------LDVVDD------MIRDHCKEGNLDKALMLRDVIVAKSAPMGCS 927

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN 455
            Y A++  LCR GK+ EA++ L E+   G+ P+
Sbjct: 928 SYLAIVDNLCRKGKLSEALNLLKEMDKRGICPS 960



 Score =  168 bits (426), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 131/511 (25%), Positives = 234/511 (45%), Gaps = 41/511 (8%)

Query: 6   GLSRVGEAHK---LFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           GL + GE  K   L  +M ++G  PN   Y  LI GYCR G + +A ++FD+M    VLP
Sbjct: 463 GLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLP 522

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           +   Y+ L+ G+ +   VE +     ++ ER      L  N   ++ L+    + G +  
Sbjct: 523 DLYCYNSLIFGLSKVGRVEESTKYFAQMQER-----GLLPNEFTYSGLIHGYLKNGDLES 577

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
             ++ + M        +     +++S  +S      S     M  +G+      Y  ++H
Sbjct: 578 AEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIH 637

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
            L   G    A+++L    + G +P  H Y  L+ GLC  +D EKA  +L  M SKK VD
Sbjct: 638 NLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEM-SKKGVD 696

Query: 243 RTRIC-NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
              +C N  +  LC   + +   NV   +L     P+ +T  ++I+G CK+G I  A  +
Sbjct: 697 PNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYL 756

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
            N+M+A     PDA  ++ +  G  + G +++A+  L + M  RG++  I ++N ++ G 
Sbjct: 757 YNEMLATGI-TPDAFVYSVLTTGCSSAGDLEQAM-FLIEEMFLRGHA-SISSFNNLVDGF 813

Query: 362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE---------------AK 406
            +  +++E  ++ + ++G G+V ++ T   +I GL E+ +L E               A 
Sbjct: 814 CKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAA 873

Query: 407 RFWDDIVW--------PSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVC 458
           R +  +          P ++ D+     MI+  C+ G + +A+     +V          
Sbjct: 874 RHFSSLFMDMINQGKIPLDVVDD-----MIRDHCKEGNLDKALMLRDVIVAKSAPMGCSS 928

Query: 459 YNVVIDGACKLSMKREAYQILREMRKNGLNP 489
           Y  ++D  C+     EA  +L+EM K G+ P
Sbjct: 929 YLAIVDNLCRKGKLSEALNLLKEMDKRGICP 959



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 85/295 (28%), Positives = 143/295 (48%), Gaps = 4/295 (1%)

Query: 208 SEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVL 267
           S     VLV+       ++ A +V+  M  +      R CN  L+ L        L  V 
Sbjct: 173 SPAVLDVLVDTYKKSGRVQDAAEVVLMMRDRGMAPSIRCCNALLKDLLRADAMALLWKVR 232

Query: 268 VFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLN 327
            FM+     PDV T +T+I  +CK+   + A KVL +M   + C  + VT+  +I GL  
Sbjct: 233 EFMVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRE-RGCGLNTVTYNVLIAGLCR 291

Query: 328 VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADST 387
            G ++EA     + M   G  P   TY A++ GL + RR  EAK + + M    +  +  
Sbjct: 292 SGAVEEAFG-FKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVV 350

Query: 388 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYEL 447
            YA +IDG       DEA +   ++V      +   Y  +++GLC+ G++  A   L ++
Sbjct: 351 VYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQM 410

Query: 448 VDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
           V     P+ + YN++I+G  +   K++A+++L EM   G++P+  T+ I+  +HG
Sbjct: 411 VRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIM--IHG 463



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 128/299 (42%), Gaps = 54/299 (18%)

Query: 1    MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
            +D LC    +  A  +F  + ++G VPN V+YT+LI G C+ G++  A+ +++EM   G+
Sbjct: 706  IDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGI 765

Query: 61   LPNSLTYSVLVRGVLRTRDVERANVLMFKLW------------------ERMKEEEDLSV 102
             P++  YSVL  G     D+E+A  L+ +++                  +R K +E L +
Sbjct: 766  TPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHASISSFNNLVDGFCKRGKMQETLKL 825

Query: 103  -----------NNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGH------- 144
                       N     N++  L   G ++EV  I  ++ Q  S   E A  H       
Sbjct: 826  LHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTS---ESAARHFSSLFMD 882

Query: 145  --------------MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGC 190
                          MI   C+ G    A  +  V+  +       SY +IV  LC+ G  
Sbjct: 883  MINQGKIPLDVVDDMIRDHCKEGNLDKALMLRDVIVAKSAPMGCSSYLAIVDNLCRKGKL 942

Query: 191  MRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR-TRICN 248
              A  LL+E  + G  PSE+   +L+  L     +++   VL  ML  K + + ++ CN
Sbjct: 943  SEALNLLKEMDKRGICPSENQCLILLTNLHTSGYIQEHNTVLDNMLCHKWLQKDSKFCN 1001


>gi|222623994|gb|EEE58126.1| hypothetical protein OsJ_09025 [Oryza sativa Japonica Group]
          Length = 1269

 Score =  234 bits (596), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 146/497 (29%), Positives = 241/497 (48%), Gaps = 7/497 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C +     A K+  +M+ RG   N V+Y  LI G CR+G ++ A+    +M   G+
Sbjct: 229 LEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGL 288

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P+  TY  L+ G+ ++R    A  L+    + M   E L  N   +ANL+D   REG  
Sbjct: 289 VPDGFTYGALINGLCKSRRSNEAKALL----DEMSCAE-LKPNVVVYANLIDGFMREGNA 343

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E F++ ++M        +    +++  LC+ G+   AS ++  M +    P  ++YN I
Sbjct: 344 DEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLI 403

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G  +H     A++LL E    G  P+ +TY +++ GLC   + EKA  +L+ M +K  
Sbjct: 404 IEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGL 463

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                +    +   C   N +    +   M +    PD+   N++I G  K+GR+EE+ K
Sbjct: 464 KPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTK 523

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
               M   +   P+  T++ +I G L  G ++ A  L+ Q M   G  P  V Y  +L  
Sbjct: 524 YFAQMQE-RGLLPNEFTYSGLIHGYLKNGDLESAEQLV-QRMLDTGLKPNDVIYIDLLES 581

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
            F+   +E+    F  ML  GV+ D+  Y I+I  L  S  ++ A R    I    ++ D
Sbjct: 582 YFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPD 641

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
            +VY+++I GLC++    +A   L E+   GV PNIVCYN +IDG CK      A  +  
Sbjct: 642 VHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFN 701

Query: 481 EMRKNGLNPDAVTWRIL 497
            +   GL P+ VT+  L
Sbjct: 702 SILAKGLVPNCVTYTSL 718



 Score =  194 bits (494), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 142/528 (26%), Positives = 238/528 (45%), Gaps = 43/528 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   R  EA  L  +M      PNVV Y  LI G+ R G  D A+K+  EM   GV
Sbjct: 299 INGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGV 358

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLM-------------------------------FK 89
            PN +TY  LVRG+ +   ++RA++L+                               F+
Sbjct: 359 QPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFR 418

Query: 90  LWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSL 149
           L   M E   +S N   ++ ++  LC+ G   +   + E+M         F    +I   
Sbjct: 419 LLSEM-ENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGY 477

Query: 150 CRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSE 209
           CR G    A  +   M K  + P L  YNS++ GL K G    + +   +  + G LP+E
Sbjct: 478 CREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNE 537

Query: 210 HTYKVLVEGLCGESDLEKARKVLQFML----SKKDVDRTRICNIYLRALCLIKNPTELLN 265
            TY  L+ G     DLE A +++Q ML       DV    +   Y ++     +  ++ +
Sbjct: 538 FTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKS----DDIEKVSS 593

Query: 266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 325
               ML      D      +I+     G +E A +VL+  +      PD   ++++I GL
Sbjct: 594 TFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSG-IEKNGSVPDVHVYSSLISGL 652

Query: 326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 385
                 ++A  +L + M ++G  P IV YNA++ GL +   +  A+ VFN +L  G+V +
Sbjct: 653 CKTADREKAFGILDE-MSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPN 711

Query: 386 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY 445
             TY  +IDG C+   +  A   +++++      D +VY+ +  G   +G + +A+  + 
Sbjct: 712 CVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIE 771

Query: 446 ELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVT 493
           E+   G   +I  +N ++DG CK    +E  ++L  +   GL P+A+T
Sbjct: 772 EMFLRG-HASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALT 818



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 120/481 (24%), Positives = 234/481 (48%), Gaps = 8/481 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC + ++  A  L   M    H P+ ++Y  +I G+ R      A+++  EM + G+ PN
Sbjct: 372 LCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPN 431

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             TYS+++ G+ ++ + E+A+ L+ ++  +      L  N   +A L+   CREG V+  
Sbjct: 432 VYTYSIMIHGLCQSGEPEKASDLLEEMTTK-----GLKPNAFVYAPLISGYCREGNVSLA 486

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             I + M +   + + +    +I  L + GR   +++    M++RGL P+  +Y+ ++HG
Sbjct: 487 CEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHG 546

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
             K+G    A QL++  +  G  P++  Y  L+E      D+EK     + ML +  +  
Sbjct: 547 YLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLD 606

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
            RI  I +  L    N      VL  + +    PDV   +++I+G CK    E+A  +L+
Sbjct: 607 NRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILD 666

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           +M + K   P+ V +  +I GL   G I  A N+   ++  +G  P  VTY +++ G  +
Sbjct: 667 EM-SKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSIL-AKGLVPNCVTYTSLIDGSCK 724

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
           +  +  A  ++N ML  G+  D+  Y+++  G   +  L++A    +++    +   +  
Sbjct: 725 VGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHASISS- 783

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           +  ++ G C+ GK+ E +  L+ ++  G+ PN +    +I G  +     E + I  E++
Sbjct: 784 FNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQ 843

Query: 484 K 484
           +
Sbjct: 844 Q 844



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 133/516 (25%), Positives = 235/516 (45%), Gaps = 42/516 (8%)

Query: 6   GLSRVGEAHK---LFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           GL + GE  K   L  +M ++G  PN   Y  LI GYCR G + +A ++FD+M    VLP
Sbjct: 441 GLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLP 500

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           +   Y+ L+ G+ +   VE +     ++ ER      L  N   ++ L+    + G +  
Sbjct: 501 DLYCYNSLIFGLSKVGRVEESTKYFAQMQER-----GLLPNEFTYSGLIHGYLKNGDLES 555

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
             ++ + M        +     +++S  +S      S     M  +G+      Y  ++H
Sbjct: 556 AEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIH 615

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
            L   G    A+++L    + G +P  H Y  L+ GLC  +D EKA  +L  M SKK VD
Sbjct: 616 NLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEM-SKKGVD 674

Query: 243 RTRIC-NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
              +C N  +  LC   + +   NV   +L     P+ +T  ++I+G CK+G I  A  +
Sbjct: 675 PNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYL 734

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
            N+M+A     PDA  ++ +  G  + G +++A+  L + M  RG++  I ++N ++ G 
Sbjct: 735 YNEMLATGI-TPDAFVYSVLTTGCSSAGDLEQAM-FLIEEMFLRGHA-SISSFNNLVDGF 791

Query: 362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE---------------AK 406
            +  +++E  ++ + ++G G+V ++ T   +I GL E+ +L E               A 
Sbjct: 792 CKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAA 851

Query: 407 RFWDDIVW--------PSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVC 458
           R +  +          P ++ D+     MI+  C+ G + +A+     +V          
Sbjct: 852 RHFSSLFMDMINQGKIPLDVVDD-----MIRDHCKEGNLDKALMLRDVIVAKSAPMGCSS 906

Query: 459 YNVVIDGACKLSMKREAYQILREMRKNG-LNPDAVT 493
           Y  ++D  C+     EA  +L+EM K G L P  V 
Sbjct: 907 YLAIVDNLCRKGKLSEALNLLKEMDKRGNLQPTLVA 942



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 94/360 (26%), Positives = 174/360 (48%), Gaps = 39/360 (10%)

Query: 143 GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQ 202
           G  +++ C+      A +V+  MR+RG   + V+YN ++ GLC+ G    A+   ++   
Sbjct: 226 GSALEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMED 285

Query: 203 FGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTE 262
           +G +P   TY  L+ GLC      +A+ +L  M           C               
Sbjct: 286 YGLVPDGFTYGALINGLCKSRRSNEAKALLDEM----------SC--------------- 320

Query: 263 LLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTII 322
                      + +P+V+    +I+GF + G  +EA K++ +MVA     P+ +T+  ++
Sbjct: 321 ----------AELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAG-VQPNKITYDNLV 369

Query: 323 FGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGV 382
            GL  +G++  A +LL + M +  + P  +TYN ++ G FR    ++A  + + M   G+
Sbjct: 370 RGLCKMGQMDRA-SLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGI 428

Query: 383 VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVH 442
             +  TY+I+I GLC+S + ++A    +++       + +VYA +I G CR G +  A  
Sbjct: 429 SPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACE 488

Query: 443 FLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
              ++    V P++ CYN +I G  K+    E+ +   +M++ GL P+  T+  L  +HG
Sbjct: 489 IFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGL--IHG 546



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 114/475 (24%), Positives = 207/475 (43%), Gaps = 77/475 (16%)

Query: 32  YTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLW 91
           + + +  YC+  E D A KV  EMR  G   N++TY+VL+ G                  
Sbjct: 225 HGSALEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAG------------------ 266

Query: 92  ERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCR 151
                                 LCR G V E F   +DM     V + F  G +I+ LC+
Sbjct: 267 ----------------------LCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCK 304

Query: 152 SGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHT 211
           S R++ A  ++  M    L P++V Y +++ G  + G    A+++++E +  G  P++ T
Sbjct: 305 SRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKIT 364

Query: 212 YKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFML 271
           Y  LV GLC    +++A  +L+ M+  +D  R                            
Sbjct: 365 YDNLVRGLCKMGQMDRASLLLKQMV--RDSHR---------------------------- 394

Query: 272 QTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRI 331
                PD IT N +I G  +    ++A ++L++M      +P+  T++ +I GL   G  
Sbjct: 395 -----PDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGI-SPNVYTYSIMIHGLCQSGEP 448

Query: 332 QEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAI 391
           ++A +LL + M  +G  P    Y  ++ G  R   V  A E+F+ M  + V+ D   Y  
Sbjct: 449 EKASDLLEE-MTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNS 507

Query: 392 VIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 451
           +I GL +  +++E+ +++  +     + + + Y+ +I G  ++G +  A   +  ++D+G
Sbjct: 508 LIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTG 567

Query: 452 VTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           + PN V Y  +++   K     +     + M   G+  D   + IL     + GN
Sbjct: 568 LKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGN 622



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 96/428 (22%), Positives = 170/428 (39%), Gaps = 118/428 (27%)

Query: 1    MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
            +D LC    +  A  +F  + ++G VPN V+YT+LI G C+ G++  A+ +++EM   G+
Sbjct: 684  IDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGI 743

Query: 61   LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             P++  YSVL  G     D+E+A  L+ +++ R         + ++F NLVD  C+ G +
Sbjct: 744  TPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGH------ASISSFNNLVDGFCKRGKM 797

Query: 121  NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
             E  ++                                   ++V+  RGL P+ ++  +I
Sbjct: 798  QETLKL-----------------------------------LHVIMGRGLVPNALTIENI 822

Query: 181  VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
            + GL                 + G L   HT  V ++    ES       +   M+++  
Sbjct: 823  ISGLS----------------EAGKLSEVHTIFVELQQKTSESAARHFSSLFMDMINQGK 866

Query: 241  VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
            +                      L+V+  M++  C               K G +++AL 
Sbjct: 867  IP---------------------LDVVDDMIRDHC---------------KEGNLDKAL- 889

Query: 301  VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
            +L D++  K       ++  I+  L   G++ EALNLL ++  +    P +V     L G
Sbjct: 890  MLRDVIVAKSAPMGCSSYLAIVDNLCRKGKLSEALNLLKEMDKRGNLQPTLVA----LLG 945

Query: 361  LFRLRRVEE-----AKEVFNCMLGIGVVADSTTYAI---------------VIDGLCESN 400
            +F  RR           VF   L    +A + T++                 I GL +SN
Sbjct: 946  IFWFRRHHHILNKVVFTVFAPSLMFASLAKTVTFSDSLMKKKRGQMYHQPNSIQGLDDSN 1005

Query: 401  QLDEAKRF 408
            +   AK+F
Sbjct: 1006 EEHHAKKF 1013


>gi|302758676|ref|XP_002962761.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
 gi|300169622|gb|EFJ36224.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
          Length = 707

 Score =  234 bits (596), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 143/483 (29%), Positives = 245/483 (50%), Gaps = 12/483 (2%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M  R   P+V +Y  LI G C+  + D A ++  EM   GV P+++T++ ++ G+ +   
Sbjct: 1   MNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGK 60

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
            ERA+ L+  + ER     +   +   +  L+  LC++  V+    + ++      V + 
Sbjct: 61  FERAHSLLAVMAER-----NCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDV 115

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
                + D LC+ GR   A  +V  M   G TP+LV+YN+++ GLCK     +AY+LLE 
Sbjct: 116 VTYSILADGLCKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLET 175

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
            +  G++P   TY ++V+GLC E  L+KA K+++ ML +            +  LC    
Sbjct: 176 LVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGR 235

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
             E  ++   M+   C  D +   +++NG+CK  R +EA KV+ D + G    P    + 
Sbjct: 236 VDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVV-DGIRG---TPYIDVYN 291

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
            ++ G    GR+ E  N+ ++ M  RG  P I TYN V+ GL +  +V+EA      M  
Sbjct: 292 ALMDGYCKEGRLDEIPNV-FEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHS 350

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
            G V D  +Y I+IDGL ++++  EA++  D ++      D   Y  ++   C+  +  +
Sbjct: 351 AGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDD 410

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW--RIL 497
           AV  L  ++ +GV P+ V YN +I G  + +   +AY+++ EM +NG    A T    I+
Sbjct: 411 AVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTII 470

Query: 498 DKL 500
           D+L
Sbjct: 471 DRL 473



 Score =  227 bits (579), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 135/503 (26%), Positives = 255/503 (50%), Gaps = 14/503 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC  S+  +A ++  +M  RG  P+ V++ +++ G C+ G+ + A+ +   M     
Sbjct: 17  IDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNC 76

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+  TY+ L+ G+ + ++V+RA  L+ +             +   ++ L D LC+ G +
Sbjct: 77  RPSCCTYNTLISGLCKQQNVDRAKTLVDEFV-----SSGFVPDVVTYSILADGLCKRGRI 131

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E F + ++M              +ID LC++ +   A  ++  +   G  P +V+Y  I
Sbjct: 132 DEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSGFVPDVVTYTII 191

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           V GLCK G   +A +++E  ++ G  PS  TY  L+EGLC    +++A  + + M+S KD
Sbjct: 192 VDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVS-KD 250

Query: 241 VDRTRICNIYL-RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                +  + L    C      E   V+  +  T   P +   N +++G+CK GR++E  
Sbjct: 251 CTADALAYVSLVNGYCKSSRTKEAQKVVDGIRGT---PYIDVYNALMDGYCKEGRLDEIP 307

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
            V  DM A + C P+  T+  ++ GL   G++ EA   L + M   G  P +V+YN ++ 
Sbjct: 308 NVFEDM-ACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFL-ESMHSAGCVPDVVSYNIIID 365

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
           GLF+  + +EA++V + M+  G+  D+ TY  ++   C+  + D+A     +++      
Sbjct: 366 GLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDP 425

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG-VTPNIVCYNVVIDGACKLSMKREAYQI 478
           DN  Y  +I GL ++ ++ +A   ++E++ +G V      YN +ID  CK    ++A  +
Sbjct: 426 DNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLL 485

Query: 479 LREMRKNGLNPDAVTWRI-LDKL 500
           +  M  +G+  + VT+ I +D+L
Sbjct: 486 MDHMTGHGVEANTVTYNIFIDRL 508



 Score =  221 bits (564), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 146/532 (27%), Positives = 258/532 (48%), Gaps = 48/532 (9%)

Query: 2   DQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVL 61
           D LC   R+ EA +L  +M   G  PN+V+Y TLI G C+  + + AY++ + +   G +
Sbjct: 123 DGLCKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSGFV 182

Query: 62  PNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVN 121
           P+ +TY+++V G+ +   +++A     K+ E M  +   + +   +  L++ LCR G V+
Sbjct: 183 PDVVTYTIIVDGLCKEGRLDKA----LKMVEGML-KRGCTPSVITYTALMEGLCRTGRVD 237

Query: 122 EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
           E   I ++M       +  A   +++  C+S R   A +VV  +R    TP +  YN+++
Sbjct: 238 EAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRG---TPYIDVYNALM 294

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
            G CK G       + E+    G +P+  TY ++++GLC    +++A   L+ M S   V
Sbjct: 295 DGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCV 354

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
                 NI +  L     P E   VL  M+Q    PD +T NT++  FCK  R ++A+ +
Sbjct: 355 PDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGI 414

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
           L +M+      PD VT+ T+I GL    R+ +A  L+++++          TYN ++  L
Sbjct: 415 LKNMIKAGV-DPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRL 473

Query: 362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
            +   +++A  + + M G GV A++ TY I ID LC+  +LDEA     ++     + D 
Sbjct: 474 CKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEM---DTLRDE 530

Query: 422 YVYAAMIKGLC------------------------------------RSGKIHEAVHFLY 445
             Y  +I GLC                                    ++ ++ EA+  L 
Sbjct: 531 VSYTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLE 590

Query: 446 ELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            +V  G +P+++ YN+VI   CKL    +A+++  EM   G+   +V++ +L
Sbjct: 591 LMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVL 642



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 80/339 (23%), Positives = 145/339 (42%), Gaps = 35/339 (10%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D L   S+  EA ++   M   G  P+ V+Y TL+  +C+    D A  +   M   GV
Sbjct: 364 IDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGV 423

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLW----------------ERMKEE------- 97
            P+++TY+ L+ G+ +T  +  A  LM ++                 +R+ +E       
Sbjct: 424 DPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQAL 483

Query: 98  --------EDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSL 149
                     +  N   +   +D LC+EG ++E   +  +M    ++ +E +   +I  L
Sbjct: 484 LLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEM---DTLRDEVSYTTVIIGL 540

Query: 150 CRSGRNHGASRVVYVMRK-RGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPS 208
           C++ +   AS++   M   +GL  +  ++N ++    K      A  LLE  +Q G  PS
Sbjct: 541 CKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLELMVQRGCSPS 600

Query: 209 EHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLV 268
             TY +++  LC    ++KA ++   M  +  V  +    + +  LC      E L VL 
Sbjct: 601 VITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQGRGKEALQVLE 660

Query: 269 FMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA 307
            M  + C+ D +    +       GR EEA ++L  M  
Sbjct: 661 EMASSDCEIDDLKCRKLYLALRGQGRGEEAAELLRRMTT 699


>gi|224130790|ref|XP_002328377.1| predicted protein [Populus trichocarpa]
 gi|222838092|gb|EEE76457.1| predicted protein [Populus trichocarpa]
          Length = 688

 Score =  233 bits (595), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 137/494 (27%), Positives = 257/494 (52%), Gaps = 7/494 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC L+ V  A  ++  M   G  P+V+++TTLI+G C  G++ VA ++++EM   G  P+
Sbjct: 138 LCRLNHVDFAVSVWGKMFKLGIQPDVITFTTLINGVCNEGKIKVAVELYNEMVRSGHEPD 197

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            ++Y+ L+ G+  + +   A      ++++M E+     N   +  ++DSLC++  VN+ 
Sbjct: 198 VISYNTLINGLCNSGNTNMA----VHVFKKM-EQNGCKPNVVTYNTIIDSLCKDRLVNDA 252

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
                +M       +      ++  LC  G+ + A+R+   M + G  P +V+YN I+  
Sbjct: 253 MDFLSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDS 312

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           L K      A   L E +  G  P   TY  ++ GLC    L +A ++ + M  K     
Sbjct: 313 LYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPD 372

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               N  + +LC  +   + +  L  M+     P+ +T +T+++GFC +G+++EA ++  
Sbjct: 373 VVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQLFK 432

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           +MV G+   P+ +TF+ ++ GL   G + EA   +++ M ++G  P I TYNA++ G   
Sbjct: 433 EMV-GRNVMPNTLTFSILVDGLCQEGMVSEA-RWVFETMTEKGVEPNIYTYNALMNGYCL 490

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
             ++ EA++VF  M+G G   D  +Y I+I+G C S ++D+AK     +       +   
Sbjct: 491 RCKMNEARKVFEIMVGKGCAPDLHSYNILINGYCNSRRMDKAKALLTQMSVKKLTPNTVT 550

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y  ++KGLC  G++ +A     ++  SG+ P ++ Y+++++G CK     EA ++ + M+
Sbjct: 551 YNTIMKGLCYVGRLLDAQELFKKMCSSGMLPTLMTYSILLNGLCKHGHLDEALKLFKSMK 610

Query: 484 KNGLNPDAVTWRIL 497
           +  L PD + + IL
Sbjct: 611 EKKLEPDIILYTIL 624



 Score =  221 bits (564), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 137/483 (28%), Positives = 239/483 (49%), Gaps = 42/483 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    V +A     +M  RG  P+ ++Y +++HG C  G+++ A ++F  M   G 
Sbjct: 240 IDSLCKDRLVNDAMDFLSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGC 299

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TY++++  + + R V  A   + ++ +     + +  +   +  ++  LC  G +
Sbjct: 300 KPDVVTYNIIIDSLYKDRLVNDAADFLSEMVD-----QGIPPDVVTYTTILHGLCYLGQL 354

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           NE  R+ + M Q     +  A   +IDSLC+    + A   +  M  RG+ P+ V+Y++I
Sbjct: 355 NEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTI 414

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +HG C  G    A QL +E +    +P+  T+ +LV+GLC E  + +AR V + M  K  
Sbjct: 415 LHGFCNLGQLDEATQLFKEMVGRNVMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKG- 473

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                              +P++ T N ++NG+C   ++ EA K
Sbjct: 474 ----------------------------------VEPNIYTYNALMNGYCLRCKMNEARK 499

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           V   MV GK CAPD  ++  +I G  N  R+ +A  LL Q M  +  +P  VTYN +++G
Sbjct: 500 VFEIMV-GKGCAPDLHSYNILINGYCNSRRMDKAKALLTQ-MSVKKLTPNTVTYNTIMKG 557

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L  + R+ +A+E+F  M   G++    TY+I+++GLC+   LDEA + +  +       D
Sbjct: 558 LCYVGRLLDAQELFKKMCSSGMLPTLMTYSILLNGLCKHGHLDEALKLFKSMKEKKLEPD 617

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
             +Y  +I+G+   GK+  A     +L   G+ P    YNV+I G  K  +  EAY++ R
Sbjct: 618 IILYTILIEGMFIGGKLEVAKGLFSKLSADGIQPPGRTYNVMIKGLLKEGLSDEAYELFR 677

Query: 481 EMR 483
           + +
Sbjct: 678 KWK 680



 Score =  207 bits (527), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 135/474 (28%), Positives = 235/474 (49%), Gaps = 7/474 (1%)

Query: 24  GHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERA 83
           G    V S   LI+  CR   +D A  V+ +M   G+ P+ +T++ L+ GV     ++ A
Sbjct: 123 GVTHTVYSLNILINCLCRLNHVDFAVSVWGKMFKLGIQPDVITFTTLINGVCNEGKIKVA 182

Query: 84  NVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACG 143
            V ++    R   E D+     ++  L++ LC  G  N    + + M Q           
Sbjct: 183 -VELYNEMVRSGHEPDV----ISYNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYN 237

Query: 144 HMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQF 203
            +IDSLC+    + A   +  M  RG+ P  ++YNSIVHGLC  G    A +L +   Q 
Sbjct: 238 TIIDSLCKDRLVNDAMDFLSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQN 297

Query: 204 GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTEL 263
           G  P   TY ++++ L  +  +  A   L  M+ +            L  LC +    E 
Sbjct: 298 GCKPDVVTYNIIIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEA 357

Query: 264 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF 323
           + +   M Q  C+PDV+  NT+I+  CK   + +A++ L++MV  +   P+AVT++TI+ 
Sbjct: 358 IRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMV-DRGIPPNAVTYSTILH 416

Query: 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 383
           G  N+G++ EA  L ++ M  R   P  +T++ ++ GL +   V EA+ VF  M   GV 
Sbjct: 417 GFCNLGQLDEATQL-FKEMVGRNVMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVE 475

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
            +  TY  +++G C   +++EA++ ++ +V      D + Y  +I G C S ++ +A   
Sbjct: 476 PNIYTYNALMNGYCLRCKMNEARKVFEIMVGKGCAPDLHSYNILINGYCNSRRMDKAKAL 535

Query: 444 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           L ++    +TPN V YN ++ G C +    +A ++ ++M  +G+ P  +T+ IL
Sbjct: 536 LTQMSVKKLTPNTVTYNTIMKGLCYVGRLLDAQELFKKMCSSGMLPTLMTYSIL 589



 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 111/391 (28%), Positives = 190/391 (48%), Gaps = 37/391 (9%)

Query: 107 FANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMR 166
           F   + S+ +    + V  +   M      +  ++   +I+ LCR      A  V   M 
Sbjct: 96  FGKFLGSIAKMKQYSTVVYLCNQMDLFGVTHTVYSLNILINCLCRLNHVDFAVSVWGKMF 155

Query: 167 KRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLE 226
           K G+ P ++++ ++++G+C  G    A +L  E ++ G+ P   +Y  L+ GLC   +  
Sbjct: 156 KLGIQPDVITFTTLINGVCNEGKIKVAVELYNEMVRSGHEPDVISYNTLINGLCNSGNTN 215

Query: 227 KARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVI 286
            A  V      KK                              M Q  C+P+V+T NT+I
Sbjct: 216 MAVHVF-----KK------------------------------MEQNGCKPNVVTYNTII 240

Query: 287 NGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
           +  CK   + +A+  L++MV G+   PDA+T+ +I+ GL  +G++ EA  L ++ M Q G
Sbjct: 241 DSLCKDRLVNDAMDFLSEMV-GRGIPPDAITYNSIVHGLCCLGQLNEATRL-FKRMEQNG 298

Query: 347 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
             P +VTYN ++  L++ R V +A +  + M+  G+  D  TY  ++ GLC   QL+EA 
Sbjct: 299 CKPDVVTYNIIIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAI 358

Query: 407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466
           R +  +       D   Y  +I  LC+   +++A+ FL E+VD G+ PN V Y+ ++ G 
Sbjct: 359 RLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGF 418

Query: 467 CKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           C L    EA Q+ +EM    + P+ +T+ IL
Sbjct: 419 CNLGQLDEATQLFKEMVGRNVMPNTLTFSIL 449



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 67/159 (42%), Gaps = 13/159 (8%)

Query: 348 SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKR 407
           S   ++ +  L   +R+ R+     +      +G +A    Y+ V+  LC  NQ+D    
Sbjct: 68  SSNTISVDDALASFYRMARMNPRPSIVEFGKFLGSIAKMKQYSTVV-YLC--NQMD---- 120

Query: 408 FWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGAC 467
                      H  Y    +I  LCR   +  AV    ++   G+ P+++ +  +I+G C
Sbjct: 121 ------LFGVTHTVYSLNILINCLCRLNHVDFAVSVWGKMFKLGIQPDVITFTTLINGVC 174

Query: 468 KLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
                + A ++  EM ++G  PD +++  L     N GN
Sbjct: 175 NEGKIKVAVELYNEMVRSGHEPDVISYNTLINGLCNSGN 213


>gi|215794293|gb|ACJ70132.1| restorer-of-fertility [Brassica napus]
          Length = 667

 Score =  233 bits (594), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 143/503 (28%), Positives = 253/503 (50%), Gaps = 21/503 (4%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   RV EA   F  +      PNV+++TTL++G CR G +  A  + D M   G+ PN
Sbjct: 156 LCVEDRVSEALHFFHQICK----PNVIAFTTLMNGLCREGRVVEAVALLDRMVEDGLQPN 211

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY  +V G+ +  D   A      L  +M+E   +  N   ++ ++D L ++G   + 
Sbjct: 212 QITYGTIVDGMCKMGDTVSA----LNLLRKMEEVSRIKPNVVIYSAIIDGLWKDGRQTDA 267

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             +  +M +       F    MI+  C SGR   A R++  M +R ++P +V+++ +++ 
Sbjct: 268 QNLFSEMQEKGISPNLFTYNCMINGFCSSGRWSEAQRLLREMFERKMSPDVVTFSVLINA 327

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           L K G    A +L  E +  G +P+  TY  +++G   ++ L+ A ++   M +K     
Sbjct: 328 LVKEGKFFEAEELYNEMLPRGIIPNTITYNSMIDGFSKQNRLDAAERMFYLMATKGCSPD 387

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               +I +   C  K   + + +L  M +     + IT  T+I+GFC++G +  AL +L 
Sbjct: 388 VITFSILIDGYCGAKRVDDGMKLLHEMSRRGLVANTITYTTLIHGFCQLGNLNAALDLLQ 447

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVM-----------PQRGYSPGIV 352
           +M++   C P+ VT  T++ GL N G++++AL + ++VM           P     P + 
Sbjct: 448 EMISSGVC-PNVVTCNTLLDGLCNNGKLKDALEM-FKVMQKSKMDLDASHPFNDVEPDVQ 505

Query: 353 TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI 412
           TYN ++ GL    +  EA+E++  M   G+V D+ TY  VIDGLC+ ++LDEA + +D +
Sbjct: 506 TYNILICGLINEGKFSEAEELYEEMPHRGLVPDTITYNSVIDGLCKQSRLDEATQMFDSM 565

Query: 413 VWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMK 472
                  D   +  +I G C+ G++ + +    E+   G+  N + Y  +I G C++   
Sbjct: 566 GSKGFSPDVVTFTTLINGYCKVGRVGDGLEVFCEMGRRGIVANAITYRTLIHGFCQVGNI 625

Query: 473 REAYQILREMRKNGLNPDAVTWR 495
             A  I +EM  +G+ PD +T R
Sbjct: 626 NGALDIFQEMISSGVYPDTITIR 648



 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 130/491 (26%), Positives = 235/491 (47%), Gaps = 19/491 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCG- 59
           M+ LC   RV EA  L   M   G  PN ++Y T++ G C+ G+   A  +  +M     
Sbjct: 184 MNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSR 243

Query: 60  VLPNSLTYSVLVRGVLRT-RDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREG 118
           + PN + YS ++ G+ +  R  +  N     L+  M +E+ +S N   +  +++  C  G
Sbjct: 244 IKPNVVIYSAIIDGLWKDGRQTDAQN-----LFSEM-QEKGISPNLFTYNCMINGFCSSG 297

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
             +E  R+  +M + K   +      +I++L + G+   A  +   M  RG+ P+ ++YN
Sbjct: 298 RWSEAQRLLREMFERKMSPDVVTFSVLINALVKEGKFFEAEELYNEMLPRGIIPNTITYN 357

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
           S++ G  K      A ++       G  P   T+ +L++G CG   ++   K+L  M  +
Sbjct: 358 SMIDGFSKQNRLDAAERMFYLMATKGCSPDVITFSILIDGYCGAKRVDDGMKLLHEMSRR 417

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
             V  T      +   C + N    L++L  M+ +   P+V+T NT+++G C  G++++A
Sbjct: 418 GLVANTITYTTLIHGFCQLGNLNAALDLLQEMISSGVCPNVVTCNTLLDGLCNNGKLKDA 477

Query: 299 LKVLNDMVAGKF----------CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYS 348
           L++   M   K             PD  T+  +I GL+N G+  EA   LY+ MP RG  
Sbjct: 478 LEMFKVMQKSKMDLDASHPFNDVEPDVQTYNILICGLINEGKFSEA-EELYEEMPHRGLV 536

Query: 349 PGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRF 408
           P  +TYN+V+ GL +  R++EA ++F+ M   G   D  T+  +I+G C+  ++ +    
Sbjct: 537 PDTITYNSVIDGLCKQSRLDEATQMFDSMGSKGFSPDVVTFTTLINGYCKVGRVGDGLEV 596

Query: 409 WDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACK 468
           + ++     + +   Y  +I G C+ G I+ A+    E++ SGV P+ +    ++ G   
Sbjct: 597 FCEMGRRGIVANAITYRTLIHGFCQVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWS 656

Query: 469 LSMKREAYQIL 479
               + A Q L
Sbjct: 657 KEELKRAVQCL 667



 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 125/478 (26%), Positives = 228/478 (47%), Gaps = 29/478 (6%)

Query: 35  LIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERM 94
           L  G+     +D A  +F  M     LP  + +  L+  V+R   +ER +V++     R 
Sbjct: 47  LQSGFHEIKGLDDAIDLFGYMVRSRPLPCVIDFCKLLGVVVR---MERPDVVIS--LHRK 101

Query: 95  KEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGR 154
            E   +  N  +F  L+   C    +         + +            ++  LC   R
Sbjct: 102 MEMRRIPCNIYSFTILIKCFCSCSKLPFALSTFGKITKLGFHPSLVTFSTLLHGLCVEDR 161

Query: 155 NHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKV 214
              A    + + K    P+++++ ++++GLC+ G  + A  LL+  ++ G  P++ TY  
Sbjct: 162 VSEALHFFHQICK----PNVIAFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGT 217

Query: 215 LVEGLCGESDLEKARKVLQFMLSKKDVDRTR----ICNIYLRALCLIKNPTELLNVLVFM 270
           +V+G+C   D   A  +L+ M   ++V R +    I +  +  L      T+  N+   M
Sbjct: 218 IVDGMCKMGDTVSALNLLRKM---EEVSRIKPNVVIYSAIIDGLWKDGRQTDAQNLFSEM 274

Query: 271 LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR 330
            +    P++ T N +INGFC  GR  EA ++L +M   K  +PD VTF+ +I  L+  G+
Sbjct: 275 QEKGISPNLFTYNCMINGFCSSGRWSEAQRLLREMFERKM-SPDVVTFSVLINALVKEGK 333

Query: 331 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYA 390
             EA  L  +++P RG  P  +TYN+++ G  +  R++ A+ +F  M   G   D  T++
Sbjct: 334 FFEAEELYNEMLP-RGIIPNTITYNSMIDGFSKQNRLDAAERMFYLMATKGCSPDVITFS 392

Query: 391 IVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 450
           I+IDG C + ++D+  +   ++     + +   Y  +I G C+ G ++ A+  L E++ S
Sbjct: 393 ILIDGYCGAKRVDDGMKLLHEMSRRGLVANTITYTTLIHGFCQLGNLNAALDLLQEMISS 452

Query: 451 GVTPNIVCYNVVIDGACKLSMKREAYQILREMRK-----------NGLNPDAVTWRIL 497
           GV PN+V  N ++DG C     ++A ++ + M+K           N + PD  T+ IL
Sbjct: 453 GVCPNVVTCNTLLDGLCNNGKLKDALEMFKVMQKSKMDLDASHPFNDVEPDVQTYNIL 510



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/349 (26%), Positives = 160/349 (45%), Gaps = 41/349 (11%)

Query: 165 MRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESD 224
           M  R +  ++ S+  ++   C       A     +  + G+ PS  T+  L+ GLC E  
Sbjct: 102 MEMRRIPCNIYSFTILIKCFCSCSKLPFALSTFGKITKLGFHPSLVTFSTLLHGLCVEDR 161

Query: 225 LEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNT 284
           + +A                                      L F  Q  C+P+VI   T
Sbjct: 162 VSEA--------------------------------------LHFFHQI-CKPNVIAFTT 182

Query: 285 VINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ 344
           ++NG C+ GR+ EA+ +L+ MV      P+ +T+ TI+ G+  +G    ALNLL ++   
Sbjct: 183 LMNGLCREGRVVEAVALLDRMVEDGL-QPNQITYGTIVDGMCKMGDTVSALNLLRKMEEV 241

Query: 345 RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 404
               P +V Y+A++ GL++  R  +A+ +F+ M   G+  +  TY  +I+G C S +  E
Sbjct: 242 SRIKPNVVIYSAIIDGLWKDGRQTDAQNLFSEMQEKGISPNLFTYNCMINGFCSSGRWSE 301

Query: 405 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
           A+R   ++       D   ++ +I  L + GK  EA     E++  G+ PN + YN +ID
Sbjct: 302 AQRLLREMFERKMSPDVVTFSVLINALVKEGKFFEAEELYNEMLPRGIIPNTITYNSMID 361

Query: 465 GACKLSMKREAYQILREMRKNGLNPDAVTWRIL-DKLHGNRGNDFGLRI 512
           G  K +    A ++   M   G +PD +T+ IL D   G +  D G+++
Sbjct: 362 GFSKQNRLDAAERMFYLMATKGCSPDVITFSILIDGYCGAKRVDDGMKL 410


>gi|296085490|emb|CBI29222.3| unnamed protein product [Vitis vinifera]
          Length = 826

 Score =  233 bits (593), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 141/506 (27%), Positives = 247/506 (48%), Gaps = 7/506 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C   +V +A +LFFDM+  G  PNVV+Y  LIHG C+ G +D A++  ++M   GV
Sbjct: 253 INAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGV 312

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
               +TYSVL+ G+++      AN ++ +  E+       + N   +  L+D  C+ G +
Sbjct: 313 NATLITYSVLINGLMKLEKFNEANSVLKETLEK-----GFTPNEVVYNTLIDGYCKMGNL 367

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +  RI  DM              +I   C+ G+   A  ++  M  RG + +  ++ +I
Sbjct: 368 GDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTI 427

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +H LC +     A + L E +     P++     LV GLC E     A ++   +L K  
Sbjct: 428 IHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGF 487

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                  N  +  LC   N  E + +L  ML+     D IT NT+I+G CK G++EE  K
Sbjct: 488 GANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFK 547

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +  +MV  +   PD  T+  +I G+  +G++ EA+N L+     R   P + TY  ++ G
Sbjct: 548 LRGEMVK-QGIEPDTFTYNLLIHGMCRIGKLDEAVN-LWNECKSRDLVPNVYTYGVMIDG 605

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
             +  ++EE +++F  +L   +  +S  Y  +I   C +    EA +  DD+        
Sbjct: 606 YCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPT 665

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              Y+++I G+C  G++ +A   + E+   G+ PN+VCY  +I G CKL    +   +L+
Sbjct: 666 TATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQ 725

Query: 481 EMRKNGLNPDAVTWRILDKLHGNRGN 506
           EM    ++P+ +T+ ++   +   G+
Sbjct: 726 EMSSYDIHPNKITYTVMIDGYSKSGD 751



 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 136/503 (27%), Positives = 250/503 (49%), Gaps = 11/503 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ L  L +  EA+ +  +   +G  PN V Y TLI GYC+ G +  A ++  +M   G+
Sbjct: 323 INGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGI 382

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PNS+T + +++G  +   +E+A  ++ ++  R       S+N  AF  ++  LC     
Sbjct: 383 NPNSVTLNSIIQGFCKIGQMEQAECILEEMLSR-----GFSINPGAFTTIIHWLCMNSRF 437

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
               R   +M        +     ++  LC+ G++  A  + + + ++G   +LV+ N++
Sbjct: 438 ESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNAL 497

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +HGLCK G    A +LL++ ++ G++  + TY  L+ G C E  +E+  K+   M+ +  
Sbjct: 498 IHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGI 557

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
              T   N+ +  +C I    E +N+          P+V T   +I+G+CK  +IEE  K
Sbjct: 558 EPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEK 617

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +  +++       ++V + T+I      G   EA  L +  M  +G  P   TY++++ G
Sbjct: 618 LFTELLTQNL-ELNSVVYNTLIRAYCRNGNTVEAFKL-HDDMRSKGIPPTTATYSSLIHG 675

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           +  + R+E+AK + + M   G++ +   Y  +I G C+  Q+D+      ++    +IH 
Sbjct: 676 MCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMS-SYDIHP 734

Query: 421 NYV-YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           N + Y  MI G  +SG +  A   L+E+V  G+ P+ V YNV+ +G CK     E ++I 
Sbjct: 735 NKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIEEGFKIC 794

Query: 480 REMRKNGLNPDAVTWRILDKLHG 502
             M + GL  D +T+  L  +HG
Sbjct: 795 DYMSQEGLPLDEITYTTL--VHG 815



 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 136/487 (27%), Positives = 239/487 (49%), Gaps = 10/487 (2%)

Query: 16  LFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVL 75
           +F  + ++G  P V + T L+    +  E++ +Y VF+ MR  GV P+   +S  +    
Sbjct: 199 VFRFLANKGVFPTVKTCTFLLSSLVKANELEKSYWVFETMRQ-GVSPDVYLFSTAINAFC 257

Query: 76  RTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKS 135
           +   VE A  L F +     E+  +S N   + NL+  LC+ G ++E FR  E M +   
Sbjct: 258 KGGKVEDAIQLFFDM-----EKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGV 312

Query: 136 VNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQ 195
                    +I+ L +  + + A+ V+    ++G TP+ V YN+++ G CK G    A +
Sbjct: 313 NATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALR 372

Query: 196 LLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALC 255
           +  + +  G  P+  T   +++G C    +E+A  +L+ MLS+            +  LC
Sbjct: 373 IRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLC 432

Query: 256 LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA 315
           +       L  L  ML    +P+   L T++ G CK G+  +A+++   ++   F A + 
Sbjct: 433 MNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGA-NL 491

Query: 316 VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN 375
           VT   +I GL   G +QEA+ LL +++ +RG+    +TYN ++ G  +  +VEE  ++  
Sbjct: 492 VTTNALIHGLCKTGNMQEAVRLLKKML-ERGFVLDKITYNTLISGCCKEGKVEEGFKLRG 550

Query: 376 CMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG 435
            M+  G+  D+ TY ++I G+C   +LDEA   W++      + + Y Y  MI G C++ 
Sbjct: 551 EMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKAD 610

Query: 436 KIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWR 495
           KI E      EL+   +  N V YN +I   C+     EA+++  +MR  G+ P   T+ 
Sbjct: 611 KIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYS 670

Query: 496 ILDKLHG 502
            L  +HG
Sbjct: 671 SL--IHG 675



 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 119/431 (27%), Positives = 212/431 (49%), Gaps = 36/431 (8%)

Query: 110 LVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRG 169
           L+ SL +   + + + + E M QG S  + +     I++ C+ G+   A ++ + M K G
Sbjct: 218 LLSSLVKANELEKSYWVFETMRQGVS-PDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLG 276

Query: 170 LTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKAR 229
           ++P++V+YN+++HGLCKHG    A++  E+ ++ G   +  TY VL+ GL       +A 
Sbjct: 277 VSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEAN 336

Query: 230 KVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGF 289
            VL+  L K       + N  +   C + N  + L +   M+     P+ +TLN++I GF
Sbjct: 337 SVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGF 396

Query: 290 CKMGRIEEALKVLNDMVAGKFCA-PDAVT------------------------------- 317
           CK+G++E+A  +L +M++  F   P A T                               
Sbjct: 397 CKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPND 456

Query: 318 --FTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN 375
              TT++ GL   G+  +A+ L ++++ ++G+   +VT NA++ GL +   ++EA  +  
Sbjct: 457 GLLTTLVGGLCKEGKHSDAVELWFRLL-EKGFGANLVTTNALIHGLCKTGNMQEAVRLLK 515

Query: 376 CMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG 435
            ML  G V D  TY  +I G C+  +++E  +   ++V      D + Y  +I G+CR G
Sbjct: 516 KMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIG 575

Query: 436 KIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWR 495
           K+ EAV+   E     + PN+  Y V+IDG CK     E  ++  E+    L  ++V + 
Sbjct: 576 KLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYN 635

Query: 496 ILDKLHGNRGN 506
            L + +   GN
Sbjct: 636 TLIRAYCRNGN 646


>gi|302781560|ref|XP_002972554.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
 gi|300160021|gb|EFJ26640.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
          Length = 581

 Score =  233 bits (593), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 141/494 (28%), Positives = 253/494 (51%), Gaps = 40/494 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC  + +G   +LF ++  RGH P+VV+Y TLI   C+ G+++ A ++   M   G 
Sbjct: 88  INGLCKSNELGAGMELFEELVKRGHHPDVVTYNTLIDSLCKAGDLEEARRLHGGMSSRGC 147

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +PN +TYSVL+ G+ +   ++ A  L   + E  ++  D+  N   + + +D LC++   
Sbjct: 148 VPNVVTYSVLINGLCKVGRIDEAREL---IQEMTRKSCDVLPNIITYNSFLDGLCKQSMT 204

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E                  AC      L RS R+ G+ RV         +P  V+++++
Sbjct: 205 AE------------------AC-----ELMRSLRD-GSLRV---------SPDTVTFSTL 231

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GLCK G    A    ++ I  GY+P+  TY  LV GLC    +E+A  +++ M+ K  
Sbjct: 232 IDGLCKCGQTDEACN--DDMIAGGYVPNVVTYNALVNGLCKADKMERAHAMIESMVDKGV 289

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                  ++ + A C      E L +L  M    C P+V+T N++I+G CK  R  EA +
Sbjct: 290 TPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQ 349

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +    V  +   PD VTF  +I G    G  ++A + L++ M  +   P ++T+ A++ G
Sbjct: 350 IALQ-VYNRMLVPDKVTFNILIAGACKAGNFEQA-SALFEEMVAKNMQPDVMTFGALIDG 407

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L +  +VE A+++ + M  +GV  +  TY +++ GLC+S +++E   F +++V    + +
Sbjct: 408 LCKAGQVEAARDILDLMGNLGVPPNVVTYNVLVHGLCKSGRIEEPCEFLEEMVSSGCVPE 467

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
           +  Y +++  LCR+ +  +A+  + +L   G  P+ V YN+++DG  K     +A  +L 
Sbjct: 468 SMTYGSLVYALCRASRTDDALQLVSKLKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLE 527

Query: 481 EMRKNGLNPDAVTW 494
           EM   G  PD+ T+
Sbjct: 528 EMVGKGHQPDSFTF 541



 Score =  217 bits (553), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 142/506 (28%), Positives = 247/506 (48%), Gaps = 57/506 (11%)

Query: 1   MDQLCGLSRVGEAHKLF-FDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCG 59
           +  LC       A ++F  +M   G  P +V+Y T+I+G C++ E+    ++F+E+   G
Sbjct: 52  LQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEELVKRG 111

Query: 60  VLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGY 119
             P+ +TY+ L+  + +  D+E A  L   +  R         N   ++ L++ LC+ G 
Sbjct: 112 HHPDVVTYNTLIDSLCKAGDLEEARRLHGGMSSR-----GCVPNVVTYSVLINGLCKVGR 166

Query: 120 VNEVFRIAEDMPQGKSVN---EEFACGHMIDSLCRSGRNHGASRVVYVMRKRGL--TPSL 174
           ++E   + ++M + KS +           +D LC+      A  ++  +R   L  +P  
Sbjct: 167 IDEARELIQEMTR-KSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDT 225

Query: 175 VSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQF 234
           V++++++ GLCK G    A    ++ I  GY+P+  TY  LV GLC    +E+A  +++ 
Sbjct: 226 VTFSTLIDGLCKCGQTDEACN--DDMIAGGYVPNVVTYNALVNGLCKADKMERAHAMIES 283

Query: 235 MLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGR 294
           M+ K                                      PDVIT + +++ FCK  R
Sbjct: 284 MVDKG-----------------------------------VTPDVITYSVLVDAFCKASR 308

Query: 295 IEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTY 354
           ++EAL++L+ M A + C P+ VTF +II GL    R  EA  +  QV   R   P  VT+
Sbjct: 309 VDEALELLHGM-ASRGCTPNVVTFNSIIDGLCKSDRSGEAFQIALQVY-NRMLVPDKVTF 366

Query: 355 NAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD---D 411
           N ++ G  +    E+A  +F  M+   +  D  T+  +IDGLC++ Q++ A+   D   +
Sbjct: 367 NILIAGACKAGNFEQASALFEEMVAKNMQPDVMTFGALIDGLCKAGQVEAARDILDLMGN 426

Query: 412 IVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSM 471
           +  P N+     Y  ++ GLC+SG+I E   FL E+V SG  P  + Y  ++   C+ S 
Sbjct: 427 LGVPPNV---VTYNVLVHGLCKSGRIEEPCEFLEEMVSSGCVPESMTYGSLVYALCRASR 483

Query: 472 KREAYQILREMRKNGLNPDAVTWRIL 497
             +A Q++ +++  G +PD VT+ IL
Sbjct: 484 TDDALQLVSKLKSFGWDPDTVTYNIL 509



 Score =  209 bits (533), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 132/466 (28%), Positives = 234/466 (50%), Gaps = 9/466 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEM--RHC 58
           +D LC    + EA +L   M SRG VPNVV+Y+ LI+G C+ G +D A ++  EM  + C
Sbjct: 123 IDSLCKAGDLEEARRLHGGMSSRGCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSC 182

Query: 59  GVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREG 118
            VLPN +TY+  + G+ +      A  LM  L +       +S +   F+ L+D LC+ G
Sbjct: 183 DVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLR---VSPDTVTFSTLIDGLCKCG 239

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
             +E     +DM  G  V        +++ LC++ +   A  ++  M  +G+TP +++Y+
Sbjct: 240 QTDEACN--DDMIAGGYVPNVVTYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYS 297

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
            +V   CK      A +LL      G  P+  T+  +++GLC      +A ++   + ++
Sbjct: 298 VLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQIALQVYNR 357

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
             V      NI +   C   N  +   +   M+    QPDV+T   +I+G CK G++E A
Sbjct: 358 MLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNMQPDVMTFGALIDGLCKAGQVEAA 417

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
             +L D++      P+ VT+  ++ GL   GRI+E    L + M   G  P  +TY +++
Sbjct: 418 RDIL-DLMGNLGVPPNVVTYNVLVHGLCKSGRIEEPCEFLEE-MVSSGCVPESMTYGSLV 475

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
             L R  R ++A ++ + +   G   D+ TY I++DGL +S + ++A    +++V   + 
Sbjct: 476 YALCRASRTDDALQLVSKLKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQ 535

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
            D++ +AA   GL RSG +   +  L  ++  G+ P+    + ++D
Sbjct: 536 PDSFTFAACFGGLHRSGNLAGTMELLRVVLAKGMLPDATTCSSILD 581



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 93/334 (27%), Positives = 171/334 (51%), Gaps = 7/334 (2%)

Query: 168 RGLTPSLVSYNSIVHGLCKHGGCMRAYQLLE-EGIQFGYLPSEHTYKVLVEGLCGESDLE 226
           R  + S+  YN ++  LC+ G   RA ++   E  + G  P+  TY  ++ GLC  ++L 
Sbjct: 39  RSSSRSVADYNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELG 98

Query: 227 KARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVI 286
              ++ + ++ +         N  + +LC   +  E   +   M    C P+V+T + +I
Sbjct: 99  AGMELFEELVKRGHHPDVVTYNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNVVTYSVLI 158

Query: 287 NGFCKMGRIEEALKVLNDMVAGKFC--APDAVTFTTIIFGLLNVGRIQEALNLLYQVMP- 343
           NG CK+GRI+EA +++ +M   K C   P+ +T+ + + GL       EA  L+  +   
Sbjct: 159 NGLCKVGRIDEARELIQEMTR-KSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDG 217

Query: 344 QRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLD 403
               SP  VT++ ++ GL +  + +EA    + M+  G V +  TY  +++GLC++++++
Sbjct: 218 SLRVSPDTVTFSTLIDGLCKCGQTDEACN--DDMIAGGYVPNVVTYNALVNGLCKADKME 275

Query: 404 EAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463
            A    + +V      D   Y+ ++   C++ ++ EA+  L+ +   G TPN+V +N +I
Sbjct: 276 RAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSII 335

Query: 464 DGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           DG CK     EA+QI  ++    L PD VT+ IL
Sbjct: 336 DGLCKSDRSGEAFQIALQVYNRMLVPDKVTFNIL 369



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 122/270 (45%), Gaps = 42/270 (15%)

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
           L F         V   N V+   C+ G    AL++    +A    AP  VT+ TII GL 
Sbjct: 33  LKFFFVRSSSRSVADYNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLC 92

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
               +   +  L++ + +RG+ P +VTYN ++  L +   +EEA+ +   M   G V + 
Sbjct: 93  KSNELGAGME-LFEELVKRGHHPDVVTYNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNV 151

Query: 387 TTYAIVIDGLCESNQLDEAKRFWDDI------VWPSNIH--------------------- 419
            TY+++I+GLC+  ++DEA+    ++      V P+ I                      
Sbjct: 152 VTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELM 211

Query: 420 ------------DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGAC 467
                       D   ++ +I GLC+ G+  EA +   +++  G  PN+V YN +++G C
Sbjct: 212 RSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACN--DDMIAGGYVPNVVTYNALVNGLC 269

Query: 468 KLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           K      A+ ++  M   G+ PD +T+ +L
Sbjct: 270 KADKMERAHAMIESMVDKGVTPDVITYSVL 299


>gi|359474768|ref|XP_002270963.2| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic [Vitis vinifera]
          Length = 1022

 Score =  233 bits (593), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 141/506 (27%), Positives = 247/506 (48%), Gaps = 7/506 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C   +V +A +LFFDM+  G  PNVV+Y  LIHG C+ G +D A++  ++M   GV
Sbjct: 320 INAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGV 379

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
               +TYSVL+ G+++      AN ++     +   E+  + N   +  L+D  C+ G +
Sbjct: 380 NATLITYSVLINGLMKLEKFNEANSVL-----KETLEKGFTPNEVVYNTLIDGYCKMGNL 434

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +  RI  DM              +I   C+ G+   A  ++  M  RG + +  ++ +I
Sbjct: 435 GDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTI 494

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +H LC +     A + L E +     P++     LV GLC E     A ++   +L K  
Sbjct: 495 IHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGF 554

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                  N  +  LC   N  E + +L  ML+     D IT NT+I+G CK G++EE  K
Sbjct: 555 GANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFK 614

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +  +MV  +   PD  T+  +I G+  +G++ EA+N L+     R   P + TY  ++ G
Sbjct: 615 LRGEMVK-QGIEPDTFTYNLLIHGMCRIGKLDEAVN-LWNECKSRDLVPNVYTYGVMIDG 672

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
             +  ++EE +++F  +L   +  +S  Y  +I   C +    EA +  DD+        
Sbjct: 673 YCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPT 732

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              Y+++I G+C  G++ +A   + E+   G+ PN+VCY  +I G CKL    +   +L+
Sbjct: 733 TATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQ 792

Query: 481 EMRKNGLNPDAVTWRILDKLHGNRGN 506
           EM    ++P+ +T+ ++   +   G+
Sbjct: 793 EMSSYDIHPNKITYTVMIDGYSKSGD 818



 Score =  207 bits (528), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 126/469 (26%), Positives = 234/469 (49%), Gaps = 9/469 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ L  L +  EA+ +  +   +G  PN V Y TLI GYC+ G +  A ++  +M   G+
Sbjct: 390 INGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGI 449

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PNS+T + +++G  +   +E+A  ++ ++  R       S+N  AF  ++  LC     
Sbjct: 450 NPNSVTLNSIIQGFCKIGQMEQAECILEEMLSR-----GFSINPGAFTTIIHWLCMNSRF 504

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
               R   +M        +     ++  LC+ G++  A  + + + ++G   +LV+ N++
Sbjct: 505 ESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNAL 564

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +HGLCK G    A +LL++ ++ G++  + TY  L+ G C E  +E+  K+   M+ +  
Sbjct: 565 IHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGI 624

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
              T   N+ +  +C I    E +N+          P+V T   +I+G+CK  +IEE  K
Sbjct: 625 EPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEK 684

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +  +++       ++V + T+I      G   EA  L +  M  +G  P   TY++++ G
Sbjct: 685 LFTELLTQNL-ELNSVVYNTLIRAYCRNGNTVEAFKL-HDDMRSKGIPPTTATYSSLIHG 742

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           +  + R+E+AK + + M   G++ +   Y  +I G C+  Q+D+      ++    +IH 
Sbjct: 743 MCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMS-SYDIHP 801

Query: 421 NYV-YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACK 468
           N + Y  MI G  +SG +  A   L+E+V  G+ P+ V YNV+ +G CK
Sbjct: 802 NKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCK 850



 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 136/487 (27%), Positives = 239/487 (49%), Gaps = 10/487 (2%)

Query: 16  LFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVL 75
           +F  + ++G  P V + T L+    +  E++ +Y VF+ MR  GV P+   +S  +    
Sbjct: 266 VFRFLANKGVFPTVKTCTFLLSSLVKANELEKSYWVFETMRQ-GVSPDVYLFSTAINAFC 324

Query: 76  RTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKS 135
           +   VE A  L F +     E+  +S N   + NL+  LC+ G ++E FR  E M +   
Sbjct: 325 KGGKVEDAIQLFFDM-----EKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGV 379

Query: 136 VNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQ 195
                    +I+ L +  + + A+ V+    ++G TP+ V YN+++ G CK G    A +
Sbjct: 380 NATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALR 439

Query: 196 LLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALC 255
           +  + +  G  P+  T   +++G C    +E+A  +L+ MLS+            +  LC
Sbjct: 440 IRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLC 499

Query: 256 LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA 315
           +       L  L  ML    +P+   L T++ G CK G+  +A+++   ++   F A + 
Sbjct: 500 MNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGA-NL 558

Query: 316 VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN 375
           VT   +I GL   G +QEA+ LL +++ +RG+    +TYN ++ G  +  +VEE  ++  
Sbjct: 559 VTTNALIHGLCKTGNMQEAVRLLKKML-ERGFVLDKITYNTLISGCCKEGKVEEGFKLRG 617

Query: 376 CMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG 435
            M+  G+  D+ TY ++I G+C   +LDEA   W++      + + Y Y  MI G C++ 
Sbjct: 618 EMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKAD 677

Query: 436 KIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWR 495
           KI E      EL+   +  N V YN +I   C+     EA+++  +MR  G+ P   T+ 
Sbjct: 678 KIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYS 737

Query: 496 ILDKLHG 502
            L  +HG
Sbjct: 738 SL--IHG 742



 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 119/431 (27%), Positives = 212/431 (49%), Gaps = 36/431 (8%)

Query: 110 LVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRG 169
           L+ SL +   + + + + E M QG S  + +     I++ C+ G+   A ++ + M K G
Sbjct: 285 LLSSLVKANELEKSYWVFETMRQGVS-PDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLG 343

Query: 170 LTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKAR 229
           ++P++V+YN+++HGLCKHG    A++  E+ ++ G   +  TY VL+ GL       +A 
Sbjct: 344 VSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEAN 403

Query: 230 KVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGF 289
            VL+  L K       + N  +   C + N  + L +   M+     P+ +TLN++I GF
Sbjct: 404 SVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGF 463

Query: 290 CKMGRIEEALKVLNDMVAGKFCA-PDAVT------------------------------- 317
           CK+G++E+A  +L +M++  F   P A T                               
Sbjct: 464 CKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPND 523

Query: 318 --FTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN 375
              TT++ GL   G+  +A+ L ++++ ++G+   +VT NA++ GL +   ++EA  +  
Sbjct: 524 GLLTTLVGGLCKEGKHSDAVELWFRLL-EKGFGANLVTTNALIHGLCKTGNMQEAVRLLK 582

Query: 376 CMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG 435
            ML  G V D  TY  +I G C+  +++E  +   ++V      D + Y  +I G+CR G
Sbjct: 583 KMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIG 642

Query: 436 KIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWR 495
           K+ EAV+   E     + PN+  Y V+IDG CK     E  ++  E+    L  ++V + 
Sbjct: 643 KLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYN 702

Query: 496 ILDKLHGNRGN 506
            L + +   GN
Sbjct: 703 TLIRAYCRNGN 713



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 106/410 (25%), Positives = 197/410 (48%), Gaps = 7/410 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C + ++ +A  +  +M SRG   N  ++TT+IH  C     + A +   EM    + PN
Sbjct: 463 FCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPN 522

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
               + LV G+ +      A  L F+L E+         N      L+  LC+ G + E 
Sbjct: 523 DGLLTTLVGGLCKEGKHSDAVELWFRLLEK-----GFGANLVTTNALIHGLCKTGNMQEA 577

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            R+ + M +   V ++     +I   C+ G+     ++   M K+G+ P   +YN ++HG
Sbjct: 578 VRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHG 637

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           +C+ G    A  L  E      +P+ +TY V+++G C    +E+  K+   +L++     
Sbjct: 638 MCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELN 697

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
           + + N  +RA C   N  E   +   M      P   T +++I+G C +GR+E+A K L 
Sbjct: 698 SVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDA-KCLI 756

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           D +  +   P+ V +T +I G   +G++ + +N+L Q M      P  +TY  ++ G  +
Sbjct: 757 DEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVL-QEMSSYDIHPNKITYTVMIDGYSK 815

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413
              ++ A ++ + M+G G+V D+ TY ++ +G C+  +++E K   +D V
Sbjct: 816 SGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIEEGKLLAEDGV 865



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 91/320 (28%), Positives = 148/320 (46%), Gaps = 52/320 (16%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C   +V E  KL  +M  +G  P+  +Y  LIHG CR G++D A  +++E +   ++PN 
Sbjct: 604 CKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNV 663

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
            TY V++ G  +   +E    L  +L       ++L +N+  +  L+ + CR G   E F
Sbjct: 664 YTYGVMIDGYCKADKIEEGEKLFTELLT-----QNLELNSVVYNTLIRAYCRNGNTVEAF 718

Query: 125 RIAEDMPQGKSVNEEFAC-GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           ++ +DM + K +    A    +I  +C  GR   A  ++  MRK GL P++V Y +++ G
Sbjct: 719 KLHDDM-RSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGG 777

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK G   +   +L+E   +   P++ TY V+++G     D++ A K+L  M+ K  V  
Sbjct: 778 YCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIV-- 835

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                                            PD +T N + NGFCK G+IEE      
Sbjct: 836 ---------------------------------PDTVTYNVLTNGFCKEGKIEE------ 856

Query: 304 DMVAGKFCAPDAVTFTTIIF 323
               GK  A D V F + +F
Sbjct: 857 ----GKLLAEDGVGFNSPLF 872



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 101/203 (49%), Gaps = 5/203 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C   ++ E  KLF ++ ++    N V Y TLI  YCR G    A+K+ D+MR  G+
Sbjct: 670 IDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGI 729

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P + TYS L+ G+     +E A  L+ ++      +E L  N   +  L+   C+ G +
Sbjct: 730 PPTTATYSSLIHGMCNIGRMEDAKCLIDEM-----RKEGLLPNVVCYTALIGGYCKLGQM 784

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           ++V  + ++M        +     MID   +SG    A+++++ M  +G+ P  V+YN +
Sbjct: 785 DKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVL 844

Query: 181 VHGLCKHGGCMRAYQLLEEGIQF 203
            +G CK G       L E+G+ F
Sbjct: 845 TNGFCKEGKIEEGKLLAEDGVGF 867


>gi|302769173|ref|XP_002968006.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
 gi|300164744|gb|EFJ31353.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
          Length = 737

 Score =  232 bits (592), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 138/481 (28%), Positives = 249/481 (51%), Gaps = 12/481 (2%)

Query: 17  FFD--MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVL-PNSLTYSVLVRG 73
           FFD      G+  +  +   L+  + R  +   AY +F   R CG+  P+S+TYS L+ G
Sbjct: 118 FFDWCTGQPGYKHSKFTCNCLLSAFVRKKKAQEAYDLFKNHR-CGLCSPDSITYSTLING 176

Query: 74  VLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQG 133
             + RD ++A    ++L + M E+  +  +NA +  ++  LC  G V+       DM Q 
Sbjct: 177 FCKARDFQQA----YRLLDEM-EKRGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDM-QR 230

Query: 134 KSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRA 193
                      ++D+LC+S R   AS ++  M + G  P++V+YN++++G CK G    A
Sbjct: 231 NCAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEA 290

Query: 194 YQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRA 253
             L  + ++    P   TY +L++G C +   +   K+LQ M+           N  + +
Sbjct: 291 VVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDS 350

Query: 254 LCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAP 313
           L       +  N+   ML+  C+P   T N +I+ FCK+G+++ A ++   ++  + C P
Sbjct: 351 LVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQ-LMTDRGCLP 409

Query: 314 DAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEV 373
           D  T+  +I G     RI +A  LL + M + G  P +VTYN+++ GL +  +V+EA EV
Sbjct: 410 DIYTYNIMISGACRANRIDDARQLL-ERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEV 468

Query: 374 FNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR 433
           +  +   G   D  T + +IDGLC+S +LD+A++   ++    +  D   Y  +I G C+
Sbjct: 469 YEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCK 528

Query: 434 SGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVT 493
           + ++ +++ F  E++D G  P ++ Y++VID  CK +  R+   +L+ M + G+ PDA+ 
Sbjct: 529 ADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERGVTPDAIV 588

Query: 494 W 494
           +
Sbjct: 589 Y 589



 Score =  231 bits (590), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 134/493 (27%), Positives = 253/493 (51%), Gaps = 9/493 (1%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           +  EA+ LF + +     P+ ++Y+TLI+G+C+  +   AY++ DEM   G++P++  Y+
Sbjct: 147 KAQEAYDLFKNHRCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYN 206

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
            +++G+     V+ A ++ ++  +R     + + +   +  LVD+LC+   +++   I E
Sbjct: 207 TIIKGLCDNGRVDSA-LVHYRDMQR-----NCAPSVITYTILVDALCKSARISDASLILE 260

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
           DM +            +I+  C+ G    A  +   M +   +P + +YN ++ G CK  
Sbjct: 261 DMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQE 320

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
                 +LL+E +++G  P+  TY  L++ L        A  + Q ML +         N
Sbjct: 321 RPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFN 380

Query: 249 IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 308
           + +   C +        +   M    C PD+ T N +I+G C+  RI++A ++L  M   
Sbjct: 381 LMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEA 440

Query: 309 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE 368
             C PD VT+ +I+ GL    ++ EA   +Y+V+   GY   +VT + ++ GL + RR++
Sbjct: 441 G-CPPDVVTYNSIVSGLCKASQVDEAYE-VYEVLRNGGYFLDVVTCSTLIDGLCKSRRLD 498

Query: 369 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI 428
           +A+++   M   G   D   Y I+I G C+++QLD++  F+ +++    +     Y+ +I
Sbjct: 499 DAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVI 558

Query: 429 KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLN 488
             LC+S ++ +    L  +++ GVTP+ + Y  VIDG CK     EAY++ + M++ G  
Sbjct: 559 DKLCKSARVRDGCMLLKTMLERGVTPDAIVYTSVIDGLCKSDSYDEAYELYKLMKQTGCA 618

Query: 489 PDAVTWRIL-DKL 500
           P  VT+ +L DKL
Sbjct: 619 PTVVTYNVLVDKL 631



 Score =  218 bits (555), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 139/497 (27%), Positives = 237/497 (47%), Gaps = 42/497 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC  +R+ +A  +  DM   G  PNVV+Y TLI+G+C+ G MD A  +F++M     
Sbjct: 243 VDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSC 302

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+  TY++L+ G  +    +    L+ ++ +   E   ++ N      L+DSL + G  
Sbjct: 303 SPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYN-----TLMDSLVKSGKY 357

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            + F +A+ M +       F    MID  C+ G+   A  +  +M  RG  P + +YN +
Sbjct: 358 IDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIM 417

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G C+      A QLLE   + G  P   TY  +V GLC  S +++A +V +       
Sbjct: 418 ISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYE------- 470

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                          +++N    L             DV+T +T+I+G CK  R+++A K
Sbjct: 471 ---------------VLRNGGYFL-------------DVVTCSTLIDGLCKSRRLDDAEK 502

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +L +M      APD V +T +I G     ++ ++L    +++  +G  P ++TY+ V+  
Sbjct: 503 LLREMERNG-SAPDVVAYTILIHGFCKADQLDKSLAFFSEML-DKGCVPTVITYSIVIDK 560

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L +  RV +   +   ML  GV  D+  Y  VIDGLC+S+  DEA   +  +        
Sbjct: 561 LCKSARVRDGCMLLKTMLERGVTPDAIVYTSVIDGLCKSDSYDEAYELYKLMKQTGCAPT 620

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              Y  ++  LC+  ++ EA+H L  +   G  P+ V YN V DG  K +   +A+++ +
Sbjct: 621 VVTYNVLVDKLCKVSRLDEAIHLLEVMESDGCLPDTVTYNSVFDGFWKSAEHDKAFRLFQ 680

Query: 481 EMRKNGLNPDAVTWRIL 497
            M+  G +P    + +L
Sbjct: 681 AMKSRGCSPTPFMYSLL 697



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 102/385 (26%), Positives = 186/385 (48%), Gaps = 7/385 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           MD L    +  +A  L   M  R   P+  ++  +I  +C+ G++D+AY++F  M   G 
Sbjct: 348 MDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGC 407

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           LP+  TY++++ G  R   ++ A     +L ERM E      +   + ++V  LC+   V
Sbjct: 408 LPDIYTYNIMISGACRANRIDDAR----QLLERMTEA-GCPPDVVTYNSIVSGLCKASQV 462

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E + + E +  G    +   C  +ID LC+S R   A +++  M + G  P +V+Y  +
Sbjct: 463 DEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTIL 522

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +HG CK     ++     E +  G +P+  TY ++++ LC  + +     +L+ ML +  
Sbjct: 523 IHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERGV 582

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                +    +  LC   +  E   +   M QT C P V+T N +++  CK+ R++EA+ 
Sbjct: 583 TPDAIVYTSVIDGLCKSDSYDEAYELYKLMKQTGCAPTVVTYNVLVDKLCKVSRLDEAIH 642

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +L +++    C PD VT+ ++  G        +A   L+Q M  RG SP    Y+ +L  
Sbjct: 643 LL-EVMESDGCLPDTVTYNSVFDGFWKSAEHDKAFR-LFQAMKSRGCSPTPFMYSLLLTK 700

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVAD 385
           L    ++++A E++   L  G   D
Sbjct: 701 LVAEEKMDQAMEIWEEALEAGADVD 725



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 99/212 (46%), Gaps = 43/212 (20%)

Query: 328 VGRIQEALNLLYQVMP-------QRGYSPGIVTYNAVLRGLFRLRRVEEAKEVF-NCMLG 379
           VGR+ + L+ L + +        Q GY     T N +L    R ++ +EA ++F N   G
Sbjct: 102 VGRVLQQLDDLDKAVKFFDWCTGQPGYKHSKFTCNCLLSAFVRKKKAQEAYDLFKNHRCG 161

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
           +    DS TY+ +I+G C++    +A R  D++     +  N VY  +IKGLC +G++  
Sbjct: 162 L-CSPDSITYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDS 220

Query: 440 A-VHF---------------------------------LYELVDSGVTPNIVCYNVVIDG 465
           A VH+                                 L +++++G  PN+V YN +I+G
Sbjct: 221 ALVHYRDMQRNCAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLING 280

Query: 466 ACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            CKL    EA  +  +M +N  +PD  T+ IL
Sbjct: 281 FCKLGNMDEAVVLFNQMLENSCSPDVFTYNIL 312


>gi|302784788|ref|XP_002974166.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
 gi|300158498|gb|EFJ25121.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
          Length = 647

 Score =  232 bits (591), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 147/503 (29%), Positives = 248/503 (49%), Gaps = 14/503 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           L GL + G+  +    +      P++V++T +I+G CR   +D A+ V +     G  P+
Sbjct: 16  LNGLCKTGQLDRAMLLLDEMPCSPDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPD 75

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY+V + G+ +   V+ A    F+L ++M E++ L      +  LVD L + G ++E 
Sbjct: 76  YVTYNVFIDGLCKAERVDDA----FQLLKKMDEKKCLP-TTVTYTALVDGLLKAGRLDEA 130

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             I E M +  +         +ID L ++GR   A R+   M   G  P    Y +++ G
Sbjct: 131 MAILEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGCRPDAFVYTALISG 190

Query: 184 LCKHGGCMRAY----QLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           L K G    A     Q++E G   G  P    + +++  LC   +LE A      +    
Sbjct: 191 LAKIGKLDEALVYLNQMVENGCARGVEPDVVIHNLVIRQLCASGNLEDALAYFDELDDSL 250

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
           D+      N  + ALC  +   E +  +  M + +C P + T  ++++GF K+GR++EAL
Sbjct: 251 DLTHFTF-NPLVAALCKAERTEEAIAFVKKMSERRCFPTLFTYTSLVDGFLKLGRLDEAL 309

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
             L + V   F  PDAVT+T+II GL  +GR++E     ++ M  RGY P  VTY A++ 
Sbjct: 310 LQLKEAVERGF-IPDAVTYTSIIDGLCKLGRVEEGCERFHE-MRNRGYEPDAVTYAALID 367

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
           G  + + + +A  V+  ML  G V  + TY I++DGLC++ ++ EA   +  +     + 
Sbjct: 368 GFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCVA 427

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
               Y+A++ G C  G +  AV     ++D G  PN+V YN++I G C+     +AY   
Sbjct: 428 TVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYF 487

Query: 480 REMRKNGLNPDAVTWRILDKLHG 502
            ++ +  L PD  T+     LHG
Sbjct: 488 EKLLQRRLCPDVYTFNSF--LHG 508



 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 133/477 (27%), Positives = 236/477 (49%), Gaps = 31/477 (6%)

Query: 33  TTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWE 92
           T L++G C+TG++D A  + DEM  C   P+ + ++V++ G+ R + ++ A    F + E
Sbjct: 13  TALLNGLCKTGQLDRAMLLLDEM-PCS--PDMVAFTVVINGLCREKRLDEA----FSVLE 65

Query: 93  RMKE---EEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSL 149
           R      E D    N      +D LC+   V++ F++ + M + K +        ++D L
Sbjct: 66  RAVRAGCEPDYVTYNV----FIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYTALVDGL 121

Query: 150 CRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSE 209
            ++GR   A  ++  M ++G +P+L +Y  ++ GL K G    A ++  + +  G  P  
Sbjct: 122 LKAGRLDEAMAILEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGCRPDA 181

Query: 210 HTYKVLVEGLCGESDLEKARKVLQFMLS-------KKDVDRTRICNIYLRALCLIKNPTE 262
             Y  L+ GL     L++A   L  M+        + DV    I N+ +R LC   N   
Sbjct: 182 FVYTALISGLAKIGKLDEALVYLNQMVENGCARGVEPDV---VIHNLVIRQLCASGN--- 235

Query: 263 LLNVLVFMLQTQCQPDV--ITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTT 320
           L + L +  +     D+   T N ++   CK  R EEA+  +  M + + C P   T+T+
Sbjct: 236 LEDALAYFDELDDSLDLTHFTFNPLVAALCKAERTEEAIAFVKKM-SERRCFPTLFTYTS 294

Query: 321 IIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI 380
           ++ G L +GR+ EAL  L + + +RG+ P  VTY +++ GL +L RVEE  E F+ M   
Sbjct: 295 LVDGFLKLGRLDEALLQLKEAV-ERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNR 353

Query: 381 GVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEA 440
           G   D+ TYA +IDG  ++  + +A R +  ++    +     Y  ++ GLC++G++ EA
Sbjct: 354 GYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEA 413

Query: 441 VHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
                 + + G    +V Y+ ++DG C       A ++ R M   G  P+ V++ I+
Sbjct: 414 YATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNII 470



 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 127/509 (24%), Positives = 246/509 (48%), Gaps = 21/509 (4%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D L    R+ EA  +   M  +G+ P + +YT +I G  + G ++ A ++F +M   G 
Sbjct: 118 VDGLLKAGRLDEAMAILEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGC 177

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWER---MKEEEDLSVNNAAFANLVDSLCRE 117
            P++  Y+ L+ G+ +   ++ A V + ++ E       E D+ ++N     ++  LC  
Sbjct: 178 RPDAFVYTALISGLAKIGKLDEALVYLNQMVENGCARGVEPDVVIHNL----VIRQLCAS 233

Query: 118 GYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
           G + +     +++     +   F    ++ +LC++ R   A   V  M +R   P+L +Y
Sbjct: 234 GNLEDALAYFDELDDSLDLTH-FTFNPLVAALCKAERTEEAIAFVKKMSERRCFPTLFTY 292

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
            S+V G  K G    A   L+E ++ G++P   TY  +++GLC    +E+  +    M +
Sbjct: 293 TSLVDGFLKLGRLDEALLQLKEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRN 352

Query: 238 K----KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMG 293
           +      V    + + +++A  + K       V   MLQ+      +T N +++G CK G
Sbjct: 353 RGYEPDAVTYAALIDGFMKAKMIPKAH----RVYRQMLQSGTVVSTVTYNIILDGLCKAG 408

Query: 294 RIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVT 353
           R+ EA      M   + C    VT++ ++ G  + G +  A+ L ++ M  RG  P +V+
Sbjct: 409 RVAEAYATFLAM-EERGCVATVVTYSALMDGFCSEGNVSAAVEL-FRRMLDRGCEPNLVS 466

Query: 354 YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCES-NQLDEAKRFWDDI 412
           YN ++RGL R  ++ +A   F  +L   +  D  T+   + GLC+  + + +    ++ +
Sbjct: 467 YNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNSFLHGLCQRLDTVGDGVELFESM 526

Query: 413 VWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMK 472
           V      + + Y+ ++ G+CR+G +   +   +E+V  GV P++V +N +I   C     
Sbjct: 527 VSQGTSPNLHSYSILMDGICRAGGLEVTLEIFHEMVSRGVAPDVVVFNTLIRWLCIAGRV 586

Query: 473 REAYQILREMRKNGLNPDAVT-WRILDKL 500
            EA ++ RE+ +    PDA + W +LD L
Sbjct: 587 DEALEVFRELERRS-APDAWSYWSLLDAL 614



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 118/448 (26%), Positives = 213/448 (47%), Gaps = 25/448 (5%)

Query: 68  SVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIA 127
           + L+ G+ +T  ++RA +L+        +E   S +  AF  +++ LCRE  ++E F + 
Sbjct: 13  TALLNGLCKTGQLDRAMLLL--------DEMPCSPDMVAFTVVINGLCREKRLDEAFSVL 64

Query: 128 EDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKH 187
           E   +     +       ID LC++ R   A +++  M ++   P+ V+Y ++V GL K 
Sbjct: 65  ERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYTALVDGLLKA 124

Query: 188 GGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC 247
           G    A  +LE+ ++ G  P+  TY V+++GL     +E+AR++   ML         + 
Sbjct: 125 GRLDEAMAILEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGCRPDAFVY 184

Query: 248 NIYLRALCLIKNPTELLNVLVFMLQTQC----QPDVITLNTVINGFCKMGRIEEALKVLN 303
              +  L  I    E L  L  M++  C    +PDV+  N VI   C  G +E+AL   +
Sbjct: 185 TALISGLAKIGKLDEALVYLNQMVENGCARGVEPDVVIHNLVIRQLCASGNLEDALAYFD 244

Query: 304 DMVAGKFCAPDAV-----TFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
           ++        D++     TF  ++  L    R +EA+  + ++  +R + P + TY +++
Sbjct: 245 EL-------DDSLDLTHFTFNPLVAALCKAERTEEAIAFVKKMSERRCF-PTLFTYTSLV 296

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
            G  +L R++EA       +  G + D+ TY  +IDGLC+  +++E    + ++      
Sbjct: 297 DGFLKLGRLDEALLQLKEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYE 356

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI 478
            D   YAA+I G  ++  I +A     +++ SG   + V YN+++DG CK     EAY  
Sbjct: 357 PDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYAT 416

Query: 479 LREMRKNGLNPDAVTWRILDKLHGNRGN 506
              M + G     VT+  L     + GN
Sbjct: 417 FLAMEERGCVATVVTYSALMDGFCSEGN 444



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 128/529 (24%), Positives = 228/529 (43%), Gaps = 84/529 (15%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRH--C 58
           +D L    RV EA ++F DM   G  P+   YT LI G  + G++D A    ++M    C
Sbjct: 153 IDGLSKAGRVEEARRIFVDMLGNGCRPDAFVYTALISGLAKIGKLDEALVYLNQMVENGC 212

Query: 59  --GVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCR 116
             GV P+ + +++++R +  + ++E A     +L      ++ L + +  F  LV +LC+
Sbjct: 213 ARGVEPDVVIHNLVIRQLCASGNLEDALAYFDEL------DDSLDLTHFTFNPLVAALCK 266

Query: 117 EGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVS 176
                E     + M + +     F    ++D   + GR   A   +    +RG  P  V+
Sbjct: 267 AERTEEAIAFVKKMSERRCFPTLFTYTSLVDGFLKLGRLDEALLQLKEAVERGFIPDAVT 326

Query: 177 YNSIVHGLCKHG----GCMRAYQLLEEG-------------------------------I 201
           Y SI+ GLCK G    GC R +++   G                               +
Sbjct: 327 YTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQML 386

Query: 202 QFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPT 261
           Q G + S  TY ++++GLC      KA +V                              
Sbjct: 387 QSGTVVSTVTYNIILDGLC------KAGRV-----------------------------A 411

Query: 262 ELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTI 321
           E     + M +  C   V+T + +++GFC  G +  A+++   M+  + C P+ V++  I
Sbjct: 412 EAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRML-DRGCEPNLVSYNII 470

Query: 322 IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF-RLRRVEEAKEVFNCMLGI 380
           I GL   G++ +A    ++ + QR   P + T+N+ L GL  RL  V +  E+F  M+  
Sbjct: 471 IRGLCRAGKLAKAY-FYFEKLLQRRLCPDVYTFNSFLHGLCQRLDTVGDGVELFESMVSQ 529

Query: 381 GVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEA 440
           G   +  +Y+I++DG+C +  L+     + ++V      D  V+  +I+ LC +G++ EA
Sbjct: 530 GTSPNLHSYSILMDGICRAGGLEVTLEIFHEMVSRGVAPDVVVFNTLIRWLCIAGRVDEA 589

Query: 441 VHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNP 489
           +    EL +    P+   Y  ++D   +     EA  +   M+  G  P
Sbjct: 590 LEVFREL-ERRSAPDAWSYWSLLDALSRCERMEEARLLSFHMKLQGCAP 637



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 119/233 (51%), Gaps = 9/233 (3%)

Query: 278 DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNL 337
           D      ++NG CK G+++ A+ +L++M     C+PD V FT +I GL    R+ EA ++
Sbjct: 8   DTRVCTALLNGLCKTGQLDRAMLLLDEMP----CSPDMVAFTVVINGLCREKRLDEAFSV 63

Query: 338 LYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLC 397
           L + + + G  P  VTYN  + GL +  RV++A ++   M     +  + TY  ++DGL 
Sbjct: 64  LERAV-RAGCEPDYVTYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYTALVDGLL 122

Query: 398 ESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIV 457
           ++ +LDEA    + +V   N      Y  +I GL ++G++ EA     +++ +G  P+  
Sbjct: 123 KAGRLDEAMAILEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGCRPDAF 182

Query: 458 CYNVVIDGACKLSMKREAYQILREMRKN----GLNPDAVTWRILDKLHGNRGN 506
            Y  +I G  K+    EA   L +M +N    G+ PD V   ++ +     GN
Sbjct: 183 VYTALISGLAKIGKLDEALVYLNQMVENGCARGVEPDVVIHNLVIRQLCASGN 235



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 62/115 (53%), Gaps = 3/115 (2%)

Query: 383 VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVH 442
           + D+     +++GLC++ QLD A    D++  P +  D   +  +I GLCR  ++ EA  
Sbjct: 6   LVDTRVCTALLNGLCKTGQLDRAMLLLDEM--PCS-PDMVAFTVVINGLCREKRLDEAFS 62

Query: 443 FLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            L   V +G  P+ V YNV IDG CK     +A+Q+L++M +    P  VT+  L
Sbjct: 63  VLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYTAL 117


>gi|449508067|ref|XP_004163208.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score =  232 bits (591), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 141/499 (28%), Positives = 256/499 (51%), Gaps = 9/499 (1%)

Query: 3   QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           QL     V  A  ++  M + G  P+++++ T+I+  C+ G +  A  +   +      P
Sbjct: 176 QLGKFDMVDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYP 235

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           N+ TY+ L+ G  R  +++    L F +++RM ++     N+  ++ L++ LC EG + E
Sbjct: 236 NAFTYTSLILGHCRNHNLD----LAFAMFDRMVKD-GCDPNSVTYSTLINGLCSEGRLEE 290

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
              + E+M Q       +     + SLC +G +  A  ++  M+KRG  P++ ++ +++ 
Sbjct: 291 AMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALIS 350

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           GL + G    A  L  + +  G +P+  TY  L+  LC E   E A  + ++MLS   + 
Sbjct: 351 GLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLP 410

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
            T+  N  ++  CL+ +  + + +   ML+    P+VIT NT+I G+CK G +  A+++L
Sbjct: 411 STQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLL 470

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
            +++ G    PDA T+T +I G    G+++ A +L Y +M + G SP  VTY A++ G F
Sbjct: 471 -EIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMM-EHGISPNHVTYTAIIDGYF 528

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
            L +V++A  +F  M+  G +  S TY ++I G  ++N + EA+ F   +V    + +  
Sbjct: 529 NLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVI 588

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREA--YQILR 480
            Y + I GLCR+G+   A    +E+      PN+  Y+ +I G C+     +A  Y +L 
Sbjct: 589 TYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLA 648

Query: 481 EMRKNGLNPDAVTWRILDK 499
            +   G  P+  T+  L K
Sbjct: 649 RLTHYGCEPNVDTYTTLVK 667



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 134/504 (26%), Positives = 223/504 (44%), Gaps = 19/504 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   R+ EA  +  +M  +G  P V +YT  +   C  G    A ++  +M+  G 
Sbjct: 279 INGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGC 338

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +PN  T++ L+ G+ R    E A  L  K+       + L      +  L++ LC EG  
Sbjct: 339 VPNIQTFTALISGLSRDGKFEIAIGLYHKMLA-----DGLVPTTVTYNALINQLCVEGRF 393

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
              F I + M    S+        +I   C  G    A  +   M K G +P++++YN++
Sbjct: 394 ETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTL 453

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFML---- 236
           ++G CK G    A +LLE     G  P   TY  L+ G      LE A  +   M+    
Sbjct: 454 IYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGI 513

Query: 237 SKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIE 296
           S   V  T I + Y      +    + L +   M+++   P   T N +I+GF K   I 
Sbjct: 514 SPNHVTYTAIIDGYFN----LAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSIS 569

Query: 297 EALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
           EA      MV      P+ +T+T+ I GL   GR   A  + ++ M +R Y P + TY++
Sbjct: 570 EAENFCGKMVKQGL-LPNVITYTSFIDGLCRNGRTGLAFKIFHE-MEKRNYFPNLYTYSS 627

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGI---GVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413
           ++ GL +  R E+A E++N +  +   G   +  TY  ++ GLC   +  EA +    + 
Sbjct: 628 LIYGLCQEGRAEDA-EMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQ 686

Query: 414 WPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKR 473
                    +Y A++ G C++ K+  A++  Y +   G   ++  Y  +I   CK +   
Sbjct: 687 KKGLQPSEEIYRALLIGECKNLKVESALNIFYSMDTLGFQLHLSDYKALICALCKENFIE 746

Query: 474 EAYQILREMRKNGLNPDAVTWRIL 497
           EA  I + M +   N D V W +L
Sbjct: 747 EAQCIFQTMLEKHWNSDEVAWTVL 770



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 113/471 (23%), Positives = 219/471 (46%), Gaps = 15/471 (3%)

Query: 3   QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
            LC      EA +L   MK RG VPN+ ++T LI G  R G+ ++A  ++ +M   G++P
Sbjct: 316 SLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVP 375

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
            ++TY+ L+  +      E A    F +++ M     L  +   +  ++   C  G + +
Sbjct: 376 TTVTYNALINQLCVEGRFETA----FTIFKWMLSHGSLP-STQTYNEIIKCFCLMGDIQK 430

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
              I + M +  S         +I   C+ G  + A R++ +M+  GL P   +Y  ++ 
Sbjct: 431 AMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELIS 490

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           G  + G    A  L    ++ G  P+  TY  +++G    + ++ A  +   M+   ++ 
Sbjct: 491 GFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLP 550

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
            ++  N+ +       + +E  N    M++    P+VIT  + I+G C+ GR   A K+ 
Sbjct: 551 SSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIF 610

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEA--LNLLYQVMPQRGYSPGIVTYNAVLRG 360
           ++M    +  P+  T++++I+GL   GR ++A   NLL + +   G  P + TY  +++G
Sbjct: 611 HEMEKRNY-FPNLYTYSSLIYGLCQEGRAEDAEMYNLLAR-LTHYGCEPNVDTYTTLVKG 668

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFW---DDIVWPSN 417
           L    R  EA ++   M   G+      Y  ++ G C++ +++ A   +   D + +  +
Sbjct: 669 LCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIGECKNLKVESALNIFYSMDTLGFQLH 728

Query: 418 IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACK 468
           + D   Y A+I  LC+   I EA      +++     + V + V++DG  K
Sbjct: 729 LSD---YKALICALCKENFIEEAQCIFQTMLEKHWNSDEVAWTVLLDGLLK 776



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 118/462 (25%), Positives = 212/462 (45%), Gaps = 14/462 (3%)

Query: 4   LCGLSRVGE---AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           + GLSR G+   A  L+  M + G VP  V+Y  LI+  C  G  + A+ +F  M   G 
Sbjct: 349 ISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGS 408

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           LP++ TY+ +++      D+++A V+  K+ +        S N   +  L+   C++G +
Sbjct: 409 LPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGS-----SPNVITYNTLIYGYCKQGNL 463

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           N   R+ E M       + +    +I    R G+   A+ + Y M + G++P+ V+Y +I
Sbjct: 464 NNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAI 523

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G         A  L  + ++ G LPS  TY V++ G    + + +A      M+ +  
Sbjct: 524 IDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGL 583

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVF--MLQTQCQPDVITLNTVINGFCKMGRIEEA 298
           +        ++  LC  +N    L   +F  M +    P++ T +++I G C+ GR E+A
Sbjct: 584 LPNVITYTSFIDGLC--RNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDA 641

Query: 299 -LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
            +  L   +    C P+  T+TT++ GL   GR  EA  L+   M ++G  P    Y A+
Sbjct: 642 EMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVS-MQKKGLQPSEEIYRAL 700

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 417
           L G  +  +VE A  +F  M  +G     + Y  +I  LC+ N ++EA+  +  ++    
Sbjct: 701 LIGECKNLKVESALNIFYSMDTLGFQLHLSDYKALICALCKENFIEEAQCIFQTMLEKHW 760

Query: 418 IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCY 459
             D   +  ++ GL + G+    +  L+ +     T N   Y
Sbjct: 761 NSDEVAWTVLLDGLLKEGETDLCLKLLHVMESRNCTLNFQTY 802



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 89/361 (24%), Positives = 165/361 (45%), Gaps = 73/361 (20%)

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL 264
           + P++H   ++++    E ++++  + L  + SK D   T +C+     + L K     L
Sbjct: 127 FAPADHVRILMIKSCRNEGEVKRVTQFLSEINSKYDFGYT-LCSFTTLLIQLGKFDMVDL 185

Query: 265 --NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN------------------- 303
             ++ + ML +  +P ++T NT+IN  CK GR++EA  +++                   
Sbjct: 186 ARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLIL 245

Query: 304 --------DMVAGKF-------CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYS 348
                   D+    F       C P++VT++T+I GL + GR++EA+++L + M Q+G  
Sbjct: 246 GHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEE-MVQKGIE 304

Query: 349 PGIVTY-----------------------------------NAVLRGLFRLRRVEEAKEV 373
           P + TY                                    A++ GL R  + E A  +
Sbjct: 305 PTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGL 364

Query: 374 FNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR 433
           ++ ML  G+V  + TY  +I+ LC   + + A   +  ++   ++     Y  +IK  C 
Sbjct: 365 YHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCL 424

Query: 434 SGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVT 493
            G I +A+    +++ +G +PN++ YN +I G CK      A ++L  M+ NGL PDA T
Sbjct: 425 MGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWT 484

Query: 494 W 494
           +
Sbjct: 485 Y 485



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 90/198 (45%)

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
           + +LN +V  +  AP       +I    N G ++     L ++  +  +   + ++  +L
Sbjct: 115 VSMLNRLVRDRLFAPADHVRILMIKSCRNEGEVKRVTQFLSEINSKYDFGYTLCSFTTLL 174

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
             L +   V+ A++++  ML  G+     T+  +I+ LC+  ++ EAK     I      
Sbjct: 175 IQLGKFDMVDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAY 234

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI 478
            + + Y ++I G CR+  +  A      +V  G  PN V Y+ +I+G C      EA  +
Sbjct: 235 PNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDM 294

Query: 479 LREMRKNGLNPDAVTWRI 496
           L EM + G+ P   T+ I
Sbjct: 295 LEEMVQKGIEPTVYTYTI 312


>gi|449463386|ref|XP_004149415.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score =  232 bits (591), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 141/499 (28%), Positives = 256/499 (51%), Gaps = 9/499 (1%)

Query: 3   QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           QL     V  A  ++  M + G  P+++++ T+I+  C+ G +  A  +   +      P
Sbjct: 176 QLGKFDMVDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYP 235

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           N+ TY+ L+ G  R  +++    L F +++RM ++     N+  ++ L++ LC EG + E
Sbjct: 236 NAFTYTSLILGHCRNHNLD----LAFAMFDRMVKD-GCDPNSVTYSTLINGLCSEGRLEE 290

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
              + E+M Q       +     + SLC +G +  A  ++  M+KRG  P++ ++ +++ 
Sbjct: 291 AMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALIS 350

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           GL + G    A  L  + +  G +P+  TY  L+  LC E   E A  + ++MLS   + 
Sbjct: 351 GLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLP 410

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
            T+  N  ++  CL+ +  + + +   ML+    P+VIT NT+I G+CK G +  A+++L
Sbjct: 411 STQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLL 470

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
            +++ G    PDA T+T +I G    G+++ A +L Y +M + G SP  VTY A++ G F
Sbjct: 471 -EIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMM-EHGISPNHVTYTAIIDGYF 528

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
            L +V++A  +F  M+  G +  S TY ++I G  ++N + EA+ F   +V    + +  
Sbjct: 529 NLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVI 588

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREA--YQILR 480
            Y + I GLCR+G+   A    +E+      PN+  Y+ +I G C+     +A  Y +L 
Sbjct: 589 TYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLA 648

Query: 481 EMRKNGLNPDAVTWRILDK 499
            +   G  P+  T+  L K
Sbjct: 649 RLTHYGCEPNVDTYTTLVK 667



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 134/504 (26%), Positives = 223/504 (44%), Gaps = 19/504 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   R+ EA  +  +M  +G  P V +YT  +   C  G    A ++  +M+  G 
Sbjct: 279 INGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGC 338

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +PN  T++ L+ G+ R    E A  L  K+       + L      +  L++ LC EG  
Sbjct: 339 VPNIQTFTALISGLSRDGKFEIAIGLYHKMLA-----DGLVPTTVTYNALINQLCVEGRF 393

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
              F I + M    S+        +I   C  G    A  +   M K G +P++++YN++
Sbjct: 394 ETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTL 453

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFML---- 236
           ++G CK G    A +LLE     G  P   TY  L+ G      LE A  +   M+    
Sbjct: 454 IYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGI 513

Query: 237 SKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIE 296
           S   V  T I + Y      +    + L +   M+++   P   T N +I+GF K   I 
Sbjct: 514 SPNHVTYTAIIDGYFN----LAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSIS 569

Query: 297 EALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
           EA      MV      P+ +T+T+ I GL   GR   A  + ++ M +R Y P + TY++
Sbjct: 570 EAENFCGKMVKQGL-LPNVITYTSFIDGLCRNGRTGLAFKIFHE-MEKRNYFPNLYTYSS 627

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGI---GVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413
           ++ GL +  R E+A E++N +  +   G   +  TY  ++ GLC   +  EA +    + 
Sbjct: 628 LIYGLCQEGRAEDA-EMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQ 686

Query: 414 WPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKR 473
                    +Y A++ G C++ K+  A++  Y +   G   ++  Y  +I   CK +   
Sbjct: 687 KKGLQPSEEIYRALLIGECKNLKVESALNIFYSMDTLGFQLHLSDYKALICALCKENFIE 746

Query: 474 EAYQILREMRKNGLNPDAVTWRIL 497
           EA  I + M +   N D V W +L
Sbjct: 747 EAQCIFQTMLEKHWNSDEVVWTVL 770



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 119/462 (25%), Positives = 213/462 (46%), Gaps = 14/462 (3%)

Query: 4   LCGLSRVGE---AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           + GLSR G+   A  L+  M + G VP  V+Y  LI+  C  G  + A+ +F  M   G 
Sbjct: 349 ISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGS 408

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           LP++ TY+ +++      D+++A V+  K+ +        S N   +  L+   C++G +
Sbjct: 409 LPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGS-----SPNVITYNTLIYGYCKQGNL 463

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           N   R+ E M       + +    +I    R G+   A+ + Y M + G++P+ V+Y +I
Sbjct: 464 NNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAI 523

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G         A  L  + ++ G LPS  TY V++ G    + + +A      M+ +  
Sbjct: 524 IDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGL 583

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVF--MLQTQCQPDVITLNTVINGFCKMGRIEEA 298
           +        ++  LC  +N    L   +F  M +    P++ T +++I G C+ GR E+A
Sbjct: 584 LPNVITYTSFIDGLC--RNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDA 641

Query: 299 -LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
            +  L   +    C P+  T+TT++ GL   GR  EA  L+   M ++G  P    Y A+
Sbjct: 642 EMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVS-MQKKGLQPSEEIYRAL 700

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 417
           L G  +  +VE A  +F  M  +G     + Y  +I  LC+ N ++EA+  +  ++    
Sbjct: 701 LIGECKNLKVESALNIFYSMDTLGFQLHLSDYKALICALCKENFIEEAQCIFQTMLEKHW 760

Query: 418 IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCY 459
             D  V+  ++ GL + G+    +  L+ +     T N   Y
Sbjct: 761 NSDEVVWTVLLDGLLKEGETDLCLKLLHVMESRNCTLNFQTY 802



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 113/471 (23%), Positives = 219/471 (46%), Gaps = 15/471 (3%)

Query: 3   QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
            LC      EA +L   MK RG VPN+ ++T LI G  R G+ ++A  ++ +M   G++P
Sbjct: 316 SLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVP 375

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
            ++TY+ L+  +      E A    F +++ M     L  +   +  ++   C  G + +
Sbjct: 376 TTVTYNALINQLCVEGRFETA----FTIFKWMLSHGSLP-STQTYNEIIKCFCLMGDIQK 430

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
              I + M +  S         +I   C+ G  + A R++ +M+  GL P   +Y  ++ 
Sbjct: 431 AMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELIS 490

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           G  + G    A  L    ++ G  P+  TY  +++G    + ++ A  +   M+   ++ 
Sbjct: 491 GFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLP 550

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
            ++  N+ +       + +E  N    M++    P+VIT  + I+G C+ GR   A K+ 
Sbjct: 551 SSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIF 610

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEA--LNLLYQVMPQRGYSPGIVTYNAVLRG 360
           ++M    +  P+  T++++I+GL   GR ++A   NLL + +   G  P + TY  +++G
Sbjct: 611 HEMEKRNY-FPNLYTYSSLIYGLCQEGRAEDAEMYNLLAR-LTHYGCEPNVDTYTTLVKG 668

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFW---DDIVWPSN 417
           L    R  EA ++   M   G+      Y  ++ G C++ +++ A   +   D + +  +
Sbjct: 669 LCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIGECKNLKVESALNIFYSMDTLGFQLH 728

Query: 418 IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACK 468
           + D   Y A+I  LC+   I EA      +++     + V + V++DG  K
Sbjct: 729 LSD---YKALICALCKENFIEEAQCIFQTMLEKHWNSDEVVWTVLLDGLLK 776



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 89/361 (24%), Positives = 165/361 (45%), Gaps = 73/361 (20%)

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL 264
           + P++H   ++++    E ++++  + L  + SK D   T +C+     + L K     L
Sbjct: 127 FAPADHVRILMIKSCRNEGEVKRVTQFLSEINSKYDFGYT-LCSFTTLLIQLGKFDMVDL 185

Query: 265 --NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN------------------- 303
             ++ + ML +  +P ++T NT+IN  CK GR++EA  +++                   
Sbjct: 186 ARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLIL 245

Query: 304 --------DMVAGKF-------CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYS 348
                   D+    F       C P++VT++T+I GL + GR++EA+++L + M Q+G  
Sbjct: 246 GHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEE-MVQKGIE 304

Query: 349 PGIVTY-----------------------------------NAVLRGLFRLRRVEEAKEV 373
           P + TY                                    A++ GL R  + E A  +
Sbjct: 305 PTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGL 364

Query: 374 FNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR 433
           ++ ML  G+V  + TY  +I+ LC   + + A   +  ++   ++     Y  +IK  C 
Sbjct: 365 YHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCL 424

Query: 434 SGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVT 493
            G I +A+    +++ +G +PN++ YN +I G CK      A ++L  M+ NGL PDA T
Sbjct: 425 MGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWT 484

Query: 494 W 494
           +
Sbjct: 485 Y 485



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 90/198 (45%)

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
           + +LN +V  +  AP       +I    N G ++     L ++  +  +   + ++  +L
Sbjct: 115 VSMLNRLVRDRLFAPADHVRILMIKSCRNEGEVKRVTQFLSEINSKYDFGYTLCSFTTLL 174

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
             L +   V+ A++++  ML  G+     T+  +I+ LC+  ++ EAK     I      
Sbjct: 175 IQLGKFDMVDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAY 234

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI 478
            + + Y ++I G CR+  +  A      +V  G  PN V Y+ +I+G C      EA  +
Sbjct: 235 PNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDM 294

Query: 479 LREMRKNGLNPDAVTWRI 496
           L EM + G+ P   T+ I
Sbjct: 295 LEEMVQKGIEPTVYTYTI 312


>gi|334183602|ref|NP_176522.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806282|sp|Q9C8T7.2|PP101_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63330
 gi|332195966|gb|AEE34087.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 559

 Score =  231 bits (588), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 141/503 (28%), Positives = 250/503 (49%), Gaps = 42/503 (8%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C  S++  A  L   M   G+ P++V+ ++L++GYC    +  A  + D+M   G  P+
Sbjct: 55  FCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPD 114

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           ++T++ L+ G+        A  L+ ++ +R  +      N   +  +V+ LC+ G ++  
Sbjct: 115 TITFTTLIHGLFLHNKASEAVALVDRMVQRGCQP-----NLVTYGVVVNGLCKRGDIDLA 169

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           F +   M   K   +      +IDSLC+      A  +   M  +G+ P++V+Y+S++  
Sbjct: 170 FNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISC 229

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LC +G    A QLL + I+    P+  T+  L++    E    +A K+   M+ K+ +D 
Sbjct: 230 LCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMI-KRSID- 287

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                                            PD+ T N++INGFC   R+++A ++  
Sbjct: 288 ---------------------------------PDIFTYNSLINGFCMHDRLDKAKQMFE 314

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            MV+ K C PD  T+ T+I G     R+++   L ++ M  RG     VTY  +++GLF 
Sbjct: 315 FMVS-KDCFPDLDTYNTLIKGFCKSKRVEDGTEL-FREMSHRGLVGDTVTYTTLIQGLFH 372

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
               + A++VF  M+  GV  D  TY+I++DGLC + +L++A   +D +       D Y+
Sbjct: 373 DGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYI 432

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y  MI+G+C++GK+ +       L   GV PN+V YN +I G C   + +EAY +L++M+
Sbjct: 433 YTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMK 492

Query: 484 KNGLNPDAVTWRILDKLHGNRGN 506
           ++G  PD+ T+  L + H   G+
Sbjct: 493 EDGPLPDSGTYNTLIRAHLRDGD 515



 Score =  201 bits (512), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 145/504 (28%), Positives = 242/504 (48%), Gaps = 49/504 (9%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C   R+ +A  L   M   G+ P+ +++TTLIHG     +   A  + D M   G  PN 
Sbjct: 91  CHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNL 150

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           +TY V+V G+ +  D++ A  L+ K+ E  K E D+ +    F  ++DSLC+  +V++  
Sbjct: 151 VTYGVVVNGLCKRGDIDLAFNLLNKM-EAAKIEADVVI----FNTIIDSLCKYRHVDDAL 205

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
            + ++M              +I  LC  GR   AS+++  M ++ + P+LV++N+++   
Sbjct: 206 NLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAF 265

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
            K G  + A +L ++ I+    P   TY  L+ G C    L+KA+++ +FM+SK      
Sbjct: 266 VKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSK------ 319

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
                                         C PD+ T NT+I GFCK  R+E+  ++  +
Sbjct: 320 -----------------------------DCFPDLDTYNTLIKGFCKSKRVEDGTELFRE 350

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
           M + +    D VT+TT+I GL + G    A  +  Q M   G  P I+TY+ +L GL   
Sbjct: 351 M-SHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQ-MVSDGVPPDIMTYSILLDGLCNN 408

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS--NIHDNY 422
            ++E+A EVF+ M    +  D   Y  +I+G+C++ ++D+    WD     S   +  N 
Sbjct: 409 GKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDG---WDLFCSLSLKGVKPNV 465

Query: 423 V-YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
           V Y  MI GLC    + EA   L ++ + G  P+   YN +I    +   K  + +++RE
Sbjct: 466 VTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIRE 525

Query: 482 MRKNGLNPDAVTWRIL-DKLHGNR 504
           MR      DA T  ++ + LH  R
Sbjct: 526 MRSCRFVGDASTIGLVANMLHDGR 549



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 108/407 (26%), Positives = 185/407 (45%), Gaps = 10/407 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC    +  A  L   M++     +VV + T+I   C+   +D A  +F EM   G+ PN
Sbjct: 160 LCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPN 219

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TYS L+  +        A+ L+  + E+      ++ N   F  L+D+  +EG   E 
Sbjct: 220 VVTYSSLISCLCSYGRWSDASQLLSDMIEK-----KINPNLVTFNALIDAFVKEGKFVEA 274

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            ++ +DM +     + F    +I+  C   R   A ++   M  +   P L +YN+++ G
Sbjct: 275 EKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKG 334

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK        +L  E    G +    TY  L++GL  + D + A+KV + M+S      
Sbjct: 335 FCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPD 394

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               +I L  LC      + L V  +M +++ + D+    T+I G CK G++++   +  
Sbjct: 395 IMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFC 454

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            + + K   P+ VT+ T+I GL +   +QEA  LL + M + G  P   TYN ++R   R
Sbjct: 455 SL-SLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKK-MKEDGPLPDSGTYNTLIRAHLR 512

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD 410
                 + E+   M     V D++T  +V + L    +LD  K F D
Sbjct: 513 DGDKAASAELIREMRSCRFVGDASTIGLVANML-HDGRLD--KSFLD 556



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 44/79 (55%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ +C   +V +   LF  +  +G  PNVV+Y T+I G C    +  AY +  +M+  G 
Sbjct: 437 IEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGP 496

Query: 61  LPNSLTYSVLVRGVLRTRD 79
           LP+S TY+ L+R  LR  D
Sbjct: 497 LPDSGTYNTLIRAHLRDGD 515



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 65/118 (55%), Gaps = 5/118 (4%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   ++ +A ++F  M+      ++  YTT+I G C+ G++D  + +F  +   GV
Sbjct: 402 LDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGV 461

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREG 118
            PN +TY+ ++ G+   R ++ A    + L ++MKE+  L  ++  +  L+ +  R+G
Sbjct: 462 KPNVVTYNTMISGLCSKRLLQEA----YALLKKMKEDGPLP-DSGTYNTLIRAHLRDG 514


>gi|302788594|ref|XP_002976066.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
 gi|300156342|gb|EFJ22971.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
          Length = 440

 Score =  231 bits (588), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 147/467 (31%), Positives = 243/467 (52%), Gaps = 49/467 (10%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +  LC   R+ +A  L+  M   G+ P+VV+Y TL+HG+C+ GE+D A K+FD     G 
Sbjct: 17  LSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGELDEALKIFDGAVKRGF 76

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P+ +TY+ L+ G  +   ++ A     ++ +RM  E +L  +   + +LV+ LC+ G V
Sbjct: 77  VPDVVTYNALINGFCKADKLDEAQ----RILQRMVSE-NLVPDVVTYNSLVNGLCKNGRV 131

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRN-HGASRVVYVMRKRGLTPSLVSYNS 179
           +E   +  D  +G S N       +I  LCR  R    A ++   + K+G  P + +YN 
Sbjct: 132 DEARMLIVD--KGFSPNV-ITYSTLISGLCRELRGVSEALKLFGSVLKQGYEPEVPTYNI 188

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++ GL K      A++L    ++ G  P   TY V ++GLC      KA +V   +L  K
Sbjct: 189 LIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLC------KAGRVEDALLMLK 242

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
           D+D                             +  C PDV++ N VING CK  R++EA 
Sbjct: 243 DMD-----------------------------EKGCVPDVVSHNAVINGLCKEKRVDEAE 273

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
            +L+ M A K C+P+A++F T+I G    G+ ++A+   ++ M +RG  P +VTYN ++ 
Sbjct: 274 VLLSGMEA-KGCSPNAISFNTLICGQCRAGKWKKAMTT-FKEMLKRGVKPTVVTYNILVD 331

Query: 360 GLFRLR---RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416
           GL + R   R++EA  +F+ M+  G V D  TY+ +IDGL ++ +LD+A+R    +    
Sbjct: 332 GLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKG 391

Query: 417 NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463
            I + Y Y ++I GLC   K+ EA+     +V+ G  P+ + Y  +I
Sbjct: 392 CIPNVYTYNSLISGLCGLEKVDEALELFVAMVEKGCVPDTITYGTII 438



 Score =  206 bits (524), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 136/479 (28%), Positives = 222/479 (46%), Gaps = 49/479 (10%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M+  G  PN ++Y  L+ G C  G M  A  +++ M   G  P+ +TY+ L+ G      
Sbjct: 1   MRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHG------ 54

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
                                              C+ G ++E  +I +   +   V + 
Sbjct: 55  ----------------------------------FCKVGELDEALKIFDGAVKRGFVPDV 80

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
                +I+  C++ +   A R++  M    L P +V+YNS+V+GLCK+G    A  L+  
Sbjct: 81  VTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYNSLVNGLCKNGRVDEARMLI-- 138

Query: 200 GIQFGYLPSEHTYKVLVEGLCGE-SDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIK 258
            +  G+ P+  TY  L+ GLC E   + +A K+   +L +         NI +  L    
Sbjct: 139 -VDKGFSPNVITYSTLISGLCRELRGVSEALKLFGSVLKQGYEPEVPTYNILIDGLLKED 197

Query: 259 NPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTF 318
              E   +   +++   +PD IT    I+G CK GR+E+AL +L DM   K C PD V+ 
Sbjct: 198 RVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDE-KGCVPDVVSH 256

Query: 319 TTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCML 378
             +I GL    R+ EA  +L   M  +G SP  +++N ++ G  R  + ++A   F  ML
Sbjct: 257 NAVINGLCKEKRVDEA-EVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEML 315

Query: 379 GIGVVADSTTYAIVIDGLCESNQ---LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG 435
             GV     TY I++DGLC++ Q   + EA   +D ++    + D   Y+A+I GL ++G
Sbjct: 316 KRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAG 375

Query: 436 KIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
           K+ +A   L  +   G  PN+  YN +I G C L    EA ++   M + G  PD +T+
Sbjct: 376 KLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLEKVDEALELFVAMVEKGCVPDTITY 434



 Score =  194 bits (494), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 111/334 (33%), Positives = 179/334 (53%), Gaps = 6/334 (1%)

Query: 165 MRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESD 224
           MRK G  P+ ++YN+++ GLC  G    A  L E  I+ GY P   TY  L+ G C   +
Sbjct: 1   MRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGE 60

Query: 225 LEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNT 284
           L++A K+    + +  V      N  +   C      E   +L  M+     PDV+T N+
Sbjct: 61  LDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYNS 120

Query: 285 VINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR-IQEALNLLYQVMP 343
           ++NG CK GR++EA  ++ D    K  +P+ +T++T+I GL    R + EAL L   V+ 
Sbjct: 121 LVNGLCKNGRVDEARMLIVD----KGFSPNVITYSTLISGLCRELRGVSEALKLFGSVLK 176

Query: 344 QRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLD 403
           Q GY P + TYN ++ GL +  RV EA E+F+ ++  G+  D+ TY + IDGLC++ +++
Sbjct: 177 Q-GYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVE 235

Query: 404 EAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463
           +A     D+     + D   + A+I GLC+  ++ EA   L  +   G +PN + +N +I
Sbjct: 236 DALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLI 295

Query: 464 DGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            G C+    ++A    +EM K G+ P  VT+ IL
Sbjct: 296 CGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNIL 329



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 118/446 (26%), Positives = 216/446 (48%), Gaps = 47/446 (10%)

Query: 55  MRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSL 114
           MR  G  PN +TY+ L+ G+     +  A  L    +ERM +    S +   +  L+   
Sbjct: 1   MRKHGFWPNRITYNALLSGLCNGGRMSDAQAL----YERMIKA-GYSPDVVTYNTLLHGF 55

Query: 115 CREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSL 174
           C+ G ++E  +I +   +   V +      +I+  C++ +   A R++  M    L P +
Sbjct: 56  CKVGELDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDV 115

Query: 175 VSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQF 234
           V+YNS+V+GLCK+G    A  L+   +  G+ P+  TY  L+ GLC E            
Sbjct: 116 VTYNSLVNGLCKNGRVDEARMLI---VDKGFSPNVITYSTLISGLCRE------------ 160

Query: 235 MLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGR 294
                                 ++  +E L +   +L+   +P+V T N +I+G  K  R
Sbjct: 161 ----------------------LRGVSEALKLFGSVLKQGYEPEVPTYNILIDGLLKEDR 198

Query: 295 IEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTY 354
           + EA ++ + +V      PDA+T+T  I GL   GR+++AL L+ + M ++G  P +V++
Sbjct: 199 VNEAFELFSGLVKHGL-EPDAITYTVFIDGLCKAGRVEDAL-LMLKDMDEKGCVPDVVSH 256

Query: 355 NAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVW 414
           NAV+ GL + +RV+EA+ + + M   G   ++ ++  +I G C + +  +A   + +++ 
Sbjct: 257 NAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLK 316

Query: 415 PSNIHDNYVYAAMIKGLCRS---GKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSM 471
                    Y  ++ GLC++   G+I EA+     +++ G  P++V Y+ +IDG  K   
Sbjct: 317 RGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGK 376

Query: 472 KREAYQILREMRKNGLNPDAVTWRIL 497
             +A ++L  M   G  P+  T+  L
Sbjct: 377 LDDARRLLGAMEAKGCIPNVYTYNSL 402



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 86/284 (30%), Positives = 142/284 (50%), Gaps = 8/284 (2%)

Query: 7   LSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLT 66
           L  V EA KLF  +  +G+ P V +Y  LI G  +   ++ A+++F  +   G+ P+++T
Sbjct: 161 LRGVSEALKLFGSVLKQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAIT 220

Query: 67  YSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRI 126
           Y+V + G+ +   VE A +LM K  +      D+  +NA    +++ LC+E  V+E   +
Sbjct: 221 YTVFIDGLCKAGRVEDA-LLMLKDMDEKGCVPDVVSHNA----VINGLCKEKRVDEAEVL 275

Query: 127 AEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK 186
              M          +   +I   CR+G+   A      M KRG+ P++V+YN +V GLCK
Sbjct: 276 LSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCK 335

Query: 187 ---HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
               G    A  L +  I+ G +P   TY  L++GL     L+ AR++L  M +K  +  
Sbjct: 336 ARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPN 395

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVIN 287
               N  +  LC ++   E L + V M++  C PD IT  T+I+
Sbjct: 396 VYTYNSLISGLCGLEKVDEALELFVAMVEKGCVPDTITYGTIIS 439


>gi|255539805|ref|XP_002510967.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550082|gb|EEF51569.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 774

 Score =  230 bits (587), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 155/498 (31%), Positives = 252/498 (50%), Gaps = 12/498 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M  LC ++ V  A  L  DM   G VPN V Y TLIH   +   ++ A K+ +EM   G 
Sbjct: 215 MKALCMVNEVDNACSLLRDMTKHGCVPNSVVYQTLIHALSKRDRVNEALKLLEEMFLMGC 274

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           LP+  T++ ++ G+ R   +     L+ ++  R       + N+  +  L++ LCR G V
Sbjct: 275 LPDVDTFNDVIYGLCRLNRIHEGAKLVDRMLFR-----GFTPNDITYGVLMNGLCRVGKV 329

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVY-VMRKRGLTPSLVSYNS 179
           +E   +   +P    V+       +I+   +SGR   A+  +Y  M K G  P + ++N+
Sbjct: 330 DEAQVLLNKVPTPNDVHFTI----LINGYVKSGRLDEANAFLYDKMIKNGCRPDVFTFNT 385

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++HGLCK G    A  ++ +    G  P+  TY  L++G C ++ LE+A  VL  M +K 
Sbjct: 386 LIHGLCKKGLMGSAVDMVNDMSANGCTPNLITYTTLLDGFCKKNQLEEAGYVLNEMSAKG 445

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                   N+ LRALC      + L++L  M    C+PD+ T NT+I G CK+ R E+AL
Sbjct: 446 FELNIMGYNVLLRALCKNGKVPKALDMLGEMSDKGCKPDIFTFNTLIFGLCKVDRKEDAL 505

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
            +  DM+     A + VT+ T+I   L  G IQEAL L+  ++  RG     +TYN +++
Sbjct: 506 ALYRDMLLDGVIA-NTVTYNTLIHAFLRGGAIQEALKLVNDML-FRGCPLDEITYNGLIK 563

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
              +L   E+A  +F+ M+   +V  + +  ++I+GLC   ++  A     D++      
Sbjct: 564 AFCKLGATEKALGLFDEMVRKDLVPSNISCNLLINGLCRVGKVCNALELLRDMIHRGLAP 623

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           D   Y ++I GLC+ G I EA +   +L   G+ P+ + YN +I   C+  M  +AY +L
Sbjct: 624 DVVTYNSLINGLCKMGNIREAFNLFNKLQAEGIQPDAITYNTLICWHCRAGMFDDAYLLL 683

Query: 480 REMRKNGLNPDAVTWRIL 497
               +N   P+ VTW IL
Sbjct: 684 LRGVENAFIPNDVTWYIL 701



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 149/534 (27%), Positives = 246/534 (46%), Gaps = 52/534 (9%)

Query: 11  GEAHKLFFDMKSRGHV-PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSV 69
           G+A ++  DMK      P   SY  ++          VA  VF EM   GV+P   T+ V
Sbjct: 154 GQATRMLLDMKGVYCCEPTFKSYNVVLDILVSANCPSVAANVFYEMLSKGVIPTVYTFGV 213

Query: 70  LVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAED 129
           +++ +    +V+ A  L+     R   +     N+  +  L+ +L +   VNE  ++ E+
Sbjct: 214 VMKALCMVNEVDNACSLL-----RDMTKHGCVPNSVVYQTLIHALSKRDRVNEALKLLEE 268

Query: 130 MPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG 189
           M     + +      +I  LCR  R H  +++V  M  RG TP+ ++Y  +++GLC+ G 
Sbjct: 269 MFLMGCLPDVDTFNDVIYGLCRLNRIHEGAKLVDRMLFRGFTPNDITYGVLMNGLCRVGK 328

Query: 190 CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC-N 248
              A  LL +       P++  + +L+ G      L++A   L   + K          N
Sbjct: 329 VDEAQVLLNKVPT----PNDVHFTILINGYVKSGRLDEANAFLYDKMIKNGCRPDVFTFN 384

Query: 249 IYLRALC---LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM 305
             +  LC   L+ +  +++N    M    C P++IT  T+++GFCK  ++EEA  VLN+M
Sbjct: 385 TLIHGLCKKGLMGSAVDMVND---MSANGCTPNLITYTTLLDGFCKKNQLEEAGYVLNEM 441

Query: 306 VAGKF----------------------------------CAPDAVTFTTIIFGLLNVGRI 331
            A  F                                  C PD  TF T+IFGL  V R 
Sbjct: 442 SAKGFELNIMGYNVLLRALCKNGKVPKALDMLGEMSDKGCKPDIFTFNTLIFGLCKVDRK 501

Query: 332 QEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAI 391
           ++AL  LY+ M   G     VTYN ++    R   ++EA ++ N ML  G   D  TY  
Sbjct: 502 EDALA-LYRDMLLDGVIANTVTYNTLIHAFLRGGAIQEALKLVNDMLFRGCPLDEITYNG 560

Query: 392 VIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 451
           +I   C+    ++A   +D++V    +  N     +I GLCR GK+  A+  L +++  G
Sbjct: 561 LIKAFCKLGATEKALGLFDEMVRKDLVPSNISCNLLINGLCRVGKVCNALELLRDMIHRG 620

Query: 452 VTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
           + P++V YN +I+G CK+   REA+ +  +++  G+ PDA+T+  L   H   G
Sbjct: 621 LAPDVVTYNSLINGLCKMGNIREAFNLFNKLQAEGIQPDAITYNTLICWHCRAG 674



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/319 (25%), Positives = 148/319 (46%), Gaps = 6/319 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC    +G A  +  DM + G  PN+++YTTL+ G+C+  +++ A  V +EM   G   N
Sbjct: 390 LCKKGLMGSAVDMVNDMSANGCTPNLITYTTLLDGFCKKNQLEEAGYVLNEMSAKGFELN 449

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            + Y+VL+R + +   V +A  ++ ++ ++  + +  + N   F      LC+     + 
Sbjct: 450 IMGYNVLLRALCKNGKVPKALDMLGEMSDKGCKPDIFTFNTLIFG-----LCKVDRKEDA 504

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             +  DM     +        +I +  R G    A ++V  M  RG     ++YN ++  
Sbjct: 505 LALYRDMLLDGVIANTVTYNTLIHAFLRGGAIQEALKLVNDMLFRGCPLDEITYNGLIKA 564

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK G   +A  L +E ++   +PS  +  +L+ GLC    +  A ++L+ M+ +     
Sbjct: 565 FCKLGATEKALGLFDEMVRKDLVPSNISCNLLINGLCRVGKVCNALELLRDMIHRGLAPD 624

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               N  +  LC + N  E  N+   +     QPD IT NT+I   C+ G  ++A  +L 
Sbjct: 625 VVTYNSLINGLCKMGNIREAFNLFNKLQAEGIQPDAITYNTLICWHCRAGMFDDAYLLLL 684

Query: 304 DMVAGKFCAPDAVTFTTII 322
             V   F  P+ VT+  ++
Sbjct: 685 RGVENAF-IPNDVTWYILV 702



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 107/219 (48%), Gaps = 5/219 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC + R  +A  L+ DM   G + N V+Y TLIH + R G +  A K+ ++M   G   +
Sbjct: 495 LCKVDRKEDALALYRDMLLDGVIANTVTYNTLIHAFLRGGAIQEALKLVNDMLFRGCPLD 554

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY+ L++   +    E+A      L++ M  + DL  +N +   L++ LCR G V   
Sbjct: 555 EITYNGLIKAFCKLGATEKA----LGLFDEMVRK-DLVPSNISCNLLINGLCRVGKVCNA 609

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             +  DM       +      +I+ LC+ G    A  +   ++  G+ P  ++YN+++  
Sbjct: 610 LELLRDMIHRGLAPDVVTYNSLINGLCKMGNIREAFNLFNKLQAEGIQPDAITYNTLICW 669

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGE 222
            C+ G    AY LL  G++  ++P++ T+ +LV     E
Sbjct: 670 HCRAGMFDDAYLLLLRGVENAFIPNDVTWYILVSNFIKE 708


>gi|297805766|ref|XP_002870767.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
 gi|297316603|gb|EFH47026.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
          Length = 747

 Score =  230 bits (587), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 146/496 (29%), Positives = 249/496 (50%), Gaps = 22/496 (4%)

Query: 13  AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVR 72
           A  +F +M      PNV +Y  LI G+C  G +DVA + FD M   G LPN +TY+ L+ 
Sbjct: 189 AENVFKEMLQSQVSPNVFTYNILIRGFCLAGNLDVALRFFDRMEKKGCLPNVVTYNTLID 248

Query: 73  GVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQ 132
           G  + R ++      F+L   M   + L  N  ++  +++ LCREG + E+  +  +M +
Sbjct: 249 GYCKLRKIDDG----FELLRSMA-LKGLEPNLISYNVVINGLCREGRMKEISFVLTEMNK 303

Query: 133 GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMR 192
                +E     +I   C+ G  H A  +   M + GL+PS+++Y S++H +CK G   R
Sbjct: 304 RGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLSPSVITYTSLIHSMCKAGNMNR 363

Query: 193 AYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLR 252
           A + L++    G  P+E TY  LV+G   +  + +A +VL+ M+           N  + 
Sbjct: 364 ATEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLKEMIDNGFSPSVVTYNALIN 423

Query: 253 ALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCA 312
             C+     + + VL  M +    PDV++ +TV++GFC+   ++EAL+V   MVA K   
Sbjct: 424 GHCIAGKMVDAIAVLEDMKEKGLTPDVVSYSTVLSGFCRSYDVDEALRVKRKMVA-KGIK 482

Query: 313 PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKE 372
           PD +T++++I G     R +EA + L+  M + G  P   TY A++        +++A +
Sbjct: 483 PDTITYSSLIQGFCEQRRTKEACD-LFDEMLRVGLPPDEFTYTALINAYCMEGDLQKAIQ 541

Query: 373 VFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY-------- 424
           + N M+  GV+ D  TY+++I+GL +  +  EAKR    + +  ++  +  Y        
Sbjct: 542 LHNEMVEKGVLPDVVTYSVLINGLNKQARTREAKRLLLKLFYEESVPSDVTYHTLIENCS 601

Query: 425 -------AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQ 477
                   ++IKG C  G + EA      +++    P+   YNV+I G C+    R+AY 
Sbjct: 602 NIEFKSVVSLIKGFCMKGMMTEADQVFESMLEKNHKPDGTAYNVMIHGHCRGGDIRKAYS 661

Query: 478 ILREMRKNGLNPDAVT 493
           + +EM K+G     VT
Sbjct: 662 LYKEMVKSGFLLHTVT 677



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 135/478 (28%), Positives = 236/478 (49%), Gaps = 43/478 (8%)

Query: 21  KSRGHVPNVVSYTTLIHGYCRTGE-MDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           ++ G +P V+SY  ++    R+   +  A  VF EM    V PN  TY++L+RG     +
Sbjct: 161 QAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLQSQVSPNVFTYNILIRGFCLAGN 220

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
           ++ A     + ++RM+++  L  N   +  L+D  C+   +++ F +   M         
Sbjct: 221 LDVA----LRFFDRMEKKGCLP-NVVTYNTLIDGYCKLRKIDDGFELLRSMALKGLEPNL 275

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
            +   +I+ LCR GR    S V+  M KRG +   V+YN+++ G CK G   +A  +  E
Sbjct: 276 ISYNVVINGLCREGRMKEISFVLTEMNKRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAE 335

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
            ++ G  PS  TY  L+  +C   ++ +A + L         D+ R+     R LC    
Sbjct: 336 MLRHGLSPSVITYTSLIHSMCKAGNMNRATEFL---------DQMRV-----RGLC---- 377

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
                            P+  T  T+++GF + G + EA +VL +M+   F +P  VT+ 
Sbjct: 378 -----------------PNERTYTTLVDGFSQKGYMNEAYRVLKEMIDNGF-SPSVVTYN 419

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
            +I G    G++ +A+ +L + M ++G +P +V+Y+ VL G  R   V+EA  V   M+ 
Sbjct: 420 ALINGHCIAGKMVDAIAVL-EDMKEKGLTPDVVSYSTVLSGFCRSYDVDEALRVKRKMVA 478

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
            G+  D+ TY+ +I G CE  +  EA   +D+++      D + Y A+I   C  G + +
Sbjct: 479 KGIKPDTITYSSLIQGFCEQRRTKEACDLFDEMLRVGLPPDEFTYTALINAYCMEGDLQK 538

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           A+    E+V+ GV P++V Y+V+I+G  K +  REA ++L ++      P  VT+  L
Sbjct: 539 AIQLHNEMVEKGVLPDVVTYSVLINGLNKQARTREAKRLLLKLFYEESVPSDVTYHTL 596



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 125/506 (24%), Positives = 233/506 (46%), Gaps = 22/506 (4%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C L ++ +  +L   M  +G  PN++SY  +I+G CR G M     V  EM   G 
Sbjct: 247 IDGYCKLRKIDDGFELLRSMALKGLEPNLISYNVVINGLCREGRMKEISFVLTEMNKRGY 306

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             + +TY+ L++G  +  +  +A V+  ++         LS +   + +L+ S+C+ G +
Sbjct: 307 SLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRH-----GLSPSVITYTSLIHSMCKAGNM 361

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           N      + M        E     ++D   + G  + A RV+  M   G +PS+V+YN++
Sbjct: 362 NRATEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLKEMIDNGFSPSVVTYNAL 421

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++G C  G  + A  +LE+  + G  P   +Y  ++ G C   D+++A +V + M++K  
Sbjct: 422 INGHCIAGKMVDAIAVLEDMKEKGLTPDVVSYSTVLSGFCRSYDVDEALRVKRKMVAKGI 481

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
              T   +  ++  C  +   E  ++   ML+    PD  T   +IN +C  G +++A++
Sbjct: 482 KPDTITYSSLIQGFCEQRRTKEACDLFDEMLRVGLPPDEFTYTALINAYCMEGDLQKAIQ 541

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN----- 355
           + N+MV  K   PD VT++ +I GL    R +EA  LL ++  +    P  VTY+     
Sbjct: 542 LHNEMVE-KGVLPDVVTYSVLINGLNKQARTREAKRLLLKLFYEESV-PSDVTYHTLIEN 599

Query: 356 ----------AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA 405
                     ++++G      + EA +VF  ML      D T Y ++I G C    + +A
Sbjct: 600 CSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLEKNHKPDGTAYNVMIHGHCRGGDIRKA 659

Query: 406 KRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDG 465
              + ++V    +       A++K L + GK++E    +  ++ S          V+++ 
Sbjct: 660 YSLYKEMVKSGFLLHTVTVIALVKTLHKEGKVNELNSVIANVLRSCELSEAEQAKVLVEI 719

Query: 466 ACKLSMKREAYQILREMRKNGLNPDA 491
             +         +L EM K+G  P+ 
Sbjct: 720 NHREGNMDVVLDVLAEMAKDGFLPNG 745



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/198 (31%), Positives = 101/198 (51%), Gaps = 2/198 (1%)

Query: 310 FCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR-VE 368
            C   +  F  ++     +  I +AL++++ +    G+ PG+++YNAVL    R +R + 
Sbjct: 129 LCNSTSSVFDLVVKSYSRLCLIDKALSIVH-LSQAHGFMPGVLSYNAVLDATIRSKRNIS 187

Query: 369 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI 428
            A+ VF  ML   V  +  TY I+I G C +  LD A RF+D +     + +   Y  +I
Sbjct: 188 FAENVFKEMLQSQVSPNVFTYNILIRGFCLAGNLDVALRFFDRMEKKGCLPNVVTYNTLI 247

Query: 429 KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLN 488
            G C+  KI +    L  +   G+ PN++ YNVVI+G C+    +E   +L EM K G +
Sbjct: 248 DGYCKLRKIDDGFELLRSMALKGLEPNLISYNVVINGLCREGRMKEISFVLTEMNKRGYS 307

Query: 489 PDAVTWRILDKLHGNRGN 506
            D VT+  L K +   GN
Sbjct: 308 LDEVTYNTLIKGYCKEGN 325


>gi|449508997|ref|XP_004163464.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Cucumis sativus]
          Length = 732

 Score =  230 bits (586), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 153/498 (30%), Positives = 248/498 (49%), Gaps = 12/498 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M  LC  + V  A  L  DM   G VPN + Y TLIH   +  ++  A K+ +EM   G 
Sbjct: 225 MKALCMFNEVDSACSLLRDMTKHGCVPNSIVYQTLIHALSQKNQVSEALKLLEEMFVMGC 284

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P+  T++ ++ G+ +   +  A  L+ ++  R         +N  +  L+  LCR G +
Sbjct: 285 MPDVQTFNDVIHGLCKVNKIHDATKLVDRMLLR-----GFYPDNMTYGFLLHGLCRIGKL 339

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGR-NHGASRVVYVMRKRGLTPSLVSYNS 179
           NE  +I   +P   +         +I+    SG+     S +   M   G  P + +YN 
Sbjct: 340 NEARKILIKIPCPNNA----ILNTLINGYVMSGQLKEAQSFLNETMINFGFQPDIFTYNI 395

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++HGLCK G    A  L+ E  + G  P+  TY +LV GLC    LE+A  VL  M ++ 
Sbjct: 396 LMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARG 455

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
               + I N  + ALC  +     LN+L  M    C+PD+ T N++I G CK+ RI+EA 
Sbjct: 456 LTINSVIYNCLICALCRKEKVHVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAF 515

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           ++ ++M+     A + VT+ T+I  LL  G  Q+AL L+   M  RG +   +TYN +++
Sbjct: 516 RLFHNMLLDGAVA-NNVTYNTLIHALLRRGAFQKALTLVND-MLFRGCTLDKITYNGLIK 573

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
              ++  +E+  E++  M+  G+ AD+ +  I+I+GLC+  ++D A  F  D +    + 
Sbjct: 574 AFCKVGNIEKGLELYEQMIMDGLGADTISCNIMINGLCKVGKVDNAFEFLRDAINRGFVP 633

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           D   Y +++ GLC+ G+I EA++    L   GV P+   YN  I   CK  M  +A    
Sbjct: 634 DIVTYNSVLNGLCKVGRIKEALNLFDRLQVEGVRPDAFTYNTFISWQCKEGMVNDACSFF 693

Query: 480 REMRKNGLNPDAVTWRIL 497
               +NG  P  +TW +L
Sbjct: 694 YRGIENGFVPSNLTWNVL 711



 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 106/413 (25%), Positives = 200/413 (48%), Gaps = 7/413 (1%)

Query: 86  LMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHM 145
           L+ KL  +MKEE  +    + F  ++    + G   +  R+  DM         F    +
Sbjct: 130 LIDKLLMQMKEE-GIVFRESIFMIIMKHYGKAGQPGQAIRLLLDMRAVYLCEPTFKSYDL 188

Query: 146 IDSLCRSGR-NHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
           +  +  +G     A+ V Y M  +G++P++ ++  ++  LC       A  LL +  + G
Sbjct: 189 VLEILVTGNCPQVATNVFYDMLSKGVSPTVFTFGIVMKALCMFNEVDSACSLLRDMTKHG 248

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL 264
            +P+   Y+ L+  L  ++ + +A K+L+ M     +   +  N  +  LC +    +  
Sbjct: 249 CVPNSIVYQTLIHALSQKNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGLCKVNKIHDAT 308

Query: 265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 324
            ++  ML     PD +T   +++G C++G++ EA K+L      K   P+     T+I G
Sbjct: 309 KLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEARKILI-----KIPCPNNAILNTLING 363

Query: 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 384
            +  G+++EA + L + M   G+ P I TYN ++ GL +   +  A+++ N M   G   
Sbjct: 364 YVMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEP 423

Query: 385 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFL 444
           +  TYAI+++GLC++  L+EA     ++       ++ +Y  +I  LCR  K+H A++ L
Sbjct: 424 NVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVALNLL 483

Query: 445 YELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            E+   G  P++  YN +I G CK+    EA+++   M  +G   + VT+  L
Sbjct: 484 SEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTL 536



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 114/485 (23%), Positives = 207/485 (42%), Gaps = 9/485 (1%)

Query: 22  SRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVE 81
            +G+      Y   I+     G+  +  K+  +M+  G++     + ++++   +     
Sbjct: 105 QKGYCHTFDVYYVFINKLGAIGKFKLIDKLLMQMKEEGIVFRESIFMIIMKHYGKAGQPG 164

Query: 82  RANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFA 141
           +A  L+  +      E      +     LV   C +   N  +    DM         F 
Sbjct: 165 QAIRLLLDMRAVYLCEPTFKSYDLVLEILVTGNCPQVATNVFY----DMLSKGVSPTVFT 220

Query: 142 CGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGI 201
            G ++ +LC       A  ++  M K G  P+ + Y +++H L +      A +LLEE  
Sbjct: 221 FGIVMKALCMFNEVDSACSLLRDMTKHGCVPNSIVYQTLIHALSQKNQVSEALKLLEEMF 280

Query: 202 QFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPT 261
             G +P   T+  ++ GLC  + +  A K++  ML +            L  LC I    
Sbjct: 281 VMGCMPDVQTFNDVIHGLCKVNKIHDATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLN 340

Query: 262 ELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTI 321
           E   +L+   +  C P+   LNT+ING+   G+++EA   LN+ +      PD  T+  +
Sbjct: 341 EARKILI---KIPC-PNNAILNTLINGYVMSGQLKEAQSFLNETMINFGFQPDIFTYNIL 396

Query: 322 IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG 381
           + GL   G +  A +L+ + M +RG  P ++TY  ++ GL +   +EEA  V + M   G
Sbjct: 397 MHGLCKEGSLSFARDLVNE-MSRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARG 455

Query: 382 VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAV 441
           +  +S  Y  +I  LC   ++  A     ++       D + Y ++I GLC+  +I EA 
Sbjct: 456 LTINSVIYNCLICALCRKEKVHVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAF 515

Query: 442 HFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLH 501
              + ++  G   N V YN +I    +    ++A  ++ +M   G   D +T+  L K  
Sbjct: 516 RLFHNMLLDGAVANNVTYNTLIHALLRRGAFQKALTLVNDMLFRGCTLDKITYNGLIKAF 575

Query: 502 GNRGN 506
              GN
Sbjct: 576 CKVGN 580



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 49/91 (53%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC + R+ EA  LF  ++  G  P+  +Y T I   C+ G ++ A   F      G 
Sbjct: 642 LNGLCKVGRIKEALNLFDRLQVEGVRPDAFTYNTFISWQCKEGMVNDACSFFYRGIENGF 701

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLW 91
           +P++LT++VLV  +L+  + E    ++ +LW
Sbjct: 702 VPSNLTWNVLVYTLLKQSNQENNFFVLDELW 732


>gi|449443698|ref|XP_004139614.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Cucumis sativus]
          Length = 732

 Score =  229 bits (585), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 153/498 (30%), Positives = 248/498 (49%), Gaps = 12/498 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M  LC  + V  A  L  DM   G VPN + Y TLIH   +  ++  A K+ +EM   G 
Sbjct: 225 MKALCMFNEVDSACSLLRDMTKHGCVPNSIVYQTLIHALSQKNQVSEALKLLEEMFVMGC 284

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P+  T++ ++ G+ +   +  A  L+ ++  R         +N  +  L+  LCR G +
Sbjct: 285 MPDVQTFNDVIHGLCKVNKIHDATKLVDRMLLR-----GFYPDNMTYGFLLHGLCRIGKL 339

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGR-NHGASRVVYVMRKRGLTPSLVSYNS 179
           NE  +I   +P   +         +I+    SG+     S +   M   G  P + +YN 
Sbjct: 340 NEARKILIKIPCPNNA----ILNTLINGYVMSGQLKEAQSFLNETMINFGFQPDIFTYNI 395

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++HGLCK G    A  L+ E  + G  P+  TY +LV GLC    LE+A  VL  M ++ 
Sbjct: 396 LMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARG 455

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
               + I N  + ALC  +     LN+L  M    C+PD+ T N++I G CK+ RI+EA 
Sbjct: 456 LTINSVIYNCLICALCRKEKVHVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAF 515

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           ++ ++M+     A + VT+ T+I  LL  G  Q+AL L+   M  RG +   +TYN +++
Sbjct: 516 RLFHNMLLDGAVA-NNVTYNTLIHALLRRGAFQKALTLVND-MLFRGCTLDKITYNGLIK 573

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
              ++  +E+  E++  M+  G+ AD+ +  I+I+GLC+  ++D A  F  D +    + 
Sbjct: 574 AFCKVGNIEKGLELYEQMIMDGLGADTISCNIMINGLCKVGKVDNAFEFLRDAINRGFVP 633

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           D   Y +++ GLC+ G+I EA++    L   GV P+   YN  I   CK  M  +A    
Sbjct: 634 DIVTYNSVLNGLCKVGRIKEALNLFDRLQVEGVRPDAFTYNTFISWQCKEGMVNDACLFF 693

Query: 480 REMRKNGLNPDAVTWRIL 497
               +NG  P  +TW +L
Sbjct: 694 YRGIENGFVPSNLTWNVL 711



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 106/413 (25%), Positives = 200/413 (48%), Gaps = 7/413 (1%)

Query: 86  LMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHM 145
           L+ KL  +MKEE  +    + F  ++    + G   +  R+  DM         F    +
Sbjct: 130 LIDKLLMQMKEE-GIVFRESIFMIIMKHYGKAGQPGQAIRLLLDMRAVYLCEPTFKSYDL 188

Query: 146 IDSLCRSGR-NHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
           +  +  +G     A+ V Y M  +G++P++ ++  ++  LC       A  LL +  + G
Sbjct: 189 VLEILVTGNCPQVATNVFYDMLSKGVSPTVFTFGIVMKALCMFNEVDSACSLLRDMTKHG 248

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL 264
            +P+   Y+ L+  L  ++ + +A K+L+ M     +   +  N  +  LC +    +  
Sbjct: 249 CVPNSIVYQTLIHALSQKNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGLCKVNKIHDAT 308

Query: 265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 324
            ++  ML     PD +T   +++G C++G++ EA K+L      K   P+     T+I G
Sbjct: 309 KLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEARKILI-----KIPCPNNAILNTLING 363

Query: 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 384
            +  G+++EA + L + M   G+ P I TYN ++ GL +   +  A+++ N M   G   
Sbjct: 364 YVMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEP 423

Query: 385 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFL 444
           +  TYAI+++GLC++  L+EA     ++       ++ +Y  +I  LCR  K+H A++ L
Sbjct: 424 NVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVALNLL 483

Query: 445 YELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            E+   G  P++  YN +I G CK+    EA+++   M  +G   + VT+  L
Sbjct: 484 SEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTL 536



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 114/485 (23%), Positives = 207/485 (42%), Gaps = 9/485 (1%)

Query: 22  SRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVE 81
            +G+      Y   I+     G+  +  K+  +M+  G++     + ++++   +     
Sbjct: 105 QKGYCHTFDVYYVFINKLGAIGKFKLIDKLLMQMKEEGIVFRESIFMIIMKHYGKAGQPG 164

Query: 82  RANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFA 141
           +A  L+  +      E      +     LV   C +   N  +    DM         F 
Sbjct: 165 QAIRLLLDMRAVYLCEPTFKSYDLVLEILVTGNCPQVATNVFY----DMLSKGVSPTVFT 220

Query: 142 CGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGI 201
            G ++ +LC       A  ++  M K G  P+ + Y +++H L +      A +LLEE  
Sbjct: 221 FGIVMKALCMFNEVDSACSLLRDMTKHGCVPNSIVYQTLIHALSQKNQVSEALKLLEEMF 280

Query: 202 QFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPT 261
             G +P   T+  ++ GLC  + +  A K++  ML +            L  LC I    
Sbjct: 281 VMGCMPDVQTFNDVIHGLCKVNKIHDATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLN 340

Query: 262 ELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTI 321
           E   +L+   +  C P+   LNT+ING+   G+++EA   LN+ +      PD  T+  +
Sbjct: 341 EARKILI---KIPC-PNNAILNTLINGYVMSGQLKEAQSFLNETMINFGFQPDIFTYNIL 396

Query: 322 IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG 381
           + GL   G +  A +L+ + M +RG  P ++TY  ++ GL +   +EEA  V + M   G
Sbjct: 397 MHGLCKEGSLSFARDLVNE-MSRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARG 455

Query: 382 VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAV 441
           +  +S  Y  +I  LC   ++  A     ++       D + Y ++I GLC+  +I EA 
Sbjct: 456 LTINSVIYNCLICALCRKEKVHVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAF 515

Query: 442 HFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLH 501
              + ++  G   N V YN +I    +    ++A  ++ +M   G   D +T+  L K  
Sbjct: 516 RLFHNMLLDGAVANNVTYNTLIHALLRRGAFQKALTLVNDMLFRGCTLDKITYNGLIKAF 575

Query: 502 GNRGN 506
              GN
Sbjct: 576 CKVGN 580



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 49/91 (53%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC + R+ EA  LF  ++  G  P+  +Y T I   C+ G ++ A   F      G 
Sbjct: 642 LNGLCKVGRIKEALNLFDRLQVEGVRPDAFTYNTFISWQCKEGMVNDACLFFYRGIENGF 701

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLW 91
           +P++LT++VLV  +L+  + E    ++ +LW
Sbjct: 702 VPSNLTWNVLVYTLLKQSNQENNFFVLDELW 732


>gi|302756537|ref|XP_002961692.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
 gi|300170351|gb|EFJ36952.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
          Length = 1056

 Score =  229 bits (583), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 161/561 (28%), Positives = 272/561 (48%), Gaps = 72/561 (12%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R+ EA +L   +K+   VPNVV + +L++G C+   +D A+++FD M+  G   +
Sbjct: 288 LCQAHRLEEAIQL---LKAMPCVPNVVCFNSLMNGLCQARRVDEAFELFDVMKESGCSAD 344

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY++L++G+ + R +  A    ++  E M+  E  S N   F+ L+  LC  G VN+ 
Sbjct: 345 VITYNILLKGLCKLRRIPEA----YRHVELMRRTEGCSPNVVTFSTLIQGLCNAGRVNQA 400

Query: 124 FRIAEDMP--QGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLT---------- 171
           + + E M   +G S N  F    +++ LC++G +    +    M +R             
Sbjct: 401 WEVYERMVAVEGISPNR-FTYAFLLEGLCKAGDSRRLEQCFEQMLEREWRSSSSWPIHSP 459

Query: 172 -----------PSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLC 220
                      P+LV+YN++V GL K G    A  LLE  I+ G  P   T+  +++GLC
Sbjct: 460 EVDFLMVQVCRPTLVTYNTLVTGLSKSGMVRDALGLLEFMIESGLSPDVITFNSVLDGLC 519

Query: 221 GESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVI 280
            E  +  A  V +  L +         +  +  L  +    E L +L  M++  C+ + +
Sbjct: 520 KEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTV 579

Query: 281 TLNTVINGFCKMGRIEEALKVLNDMV-AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLY 339
           T +TV++G  K+GR+E+A+ VL  M  AG  C PDAVT+ T+I G     R++EA+ LL 
Sbjct: 580 TYSTVVDGLLKVGRMEDAVVVLRQMRDAG--CLPDAVTYNTLIDGFFKRQRLREAVGLLR 637

Query: 340 QVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIV------- 392
           +++ + G+ P +VTY  +  GL R  R +EA E+ + M   G   ++ TY+ +       
Sbjct: 638 EML-EAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKA 696

Query: 393 -----------------------------IDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
                                        IDGLC++ ++DEA  F + ++    I D   
Sbjct: 697 GRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGRIDEAYEFLERMIRAGRIPDVVT 756

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           ++ +I GLC +G+I   +     + + G   +I  YN +I+  C       AY +L EM+
Sbjct: 757 FSILINGLCDAGRIDTGLELFCGMAERGCKADIYAYNAMINAYCLKGEFSAAYALLEEMK 816

Query: 484 KNGLNPDAVTWRILDK-LHGN 503
            +G+  + VT  I+ K L GN
Sbjct: 817 THGIAKNTVTHGIVIKALCGN 837



 Score =  207 bits (527), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 151/556 (27%), Positives = 260/556 (46%), Gaps = 73/556 (13%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   RV +A   F      G  P VV+Y+T+I G CR  E+D   K+ +EM   G 
Sbjct: 8   INGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLEEMAGRGC 67

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN++TY+ LV  +L     + A    F L ERM            F  ++  LC+EG +
Sbjct: 68  APNAVTYNTLVNALLGQGRAKEA----FSLLERMA-ANGCPPELITFGLIIKGLCKEGEI 122

Query: 121 NEVFRIAEDM------PQGK-------------SVNEEF----------------ACGHM 145
              FR+ ++M      P  +              V+E +                    M
Sbjct: 123 EAAFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPDAVTYNTM 182

Query: 146 IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY 205
           +D L ++GR   A  V+ ++ +   +P++ ++   V GL K G    AY+  +   Q G 
Sbjct: 183 VDGLYKAGRLEAAGMVLQLLAESFSSPTVFTFTIAVDGLSKAGNLTGAYEFFDSMPQTGV 242

Query: 206 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 265
            P+  TY  L++GLC    L+ A   L  +  K         +  L  LC      E + 
Sbjct: 243 SPNTVTYDALIDGLCKAGKLDIA---LGLLRDKNSQAGMFAFSSLLHGLCQAHRLEEAIQ 299

Query: 266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 325
           +L  M    C P+V+  N+++NG C+  R++EA ++  D++    C+ D +T+  ++ GL
Sbjct: 300 LLKAM---PCVPNVVCFNSLMNGLCQARRVDEAFELF-DVMKESGCSADVITYNILLKGL 355

Query: 326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI-GVVA 384
             + RI EA   +  +    G SP +VT++ +++GL    RV +A EV+  M+ + G+  
Sbjct: 356 CKLRRIPEAYRHVELMRRTEGCSPNVVTFSTLIQGLCNAGRVNQAWEVYERMVAVEGISP 415

Query: 385 DSTTYAIVIDGLC---ESNQLDEA-----KRFW-DDIVWPSNIHDNYV------------ 423
           +  TYA +++GLC   +S +L++      +R W     WP  IH   V            
Sbjct: 416 NRFTYAFLLEGLCKAGDSRRLEQCFEQMLEREWRSSSSWP--IHSPEVDFLMVQVCRPTL 473

Query: 424 --YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
             Y  ++ GL +SG + +A+  L  +++SG++P+++ +N V+DG CK     +A+ + + 
Sbjct: 474 VTYNTLVTGLSKSGMVRDALGLLEFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKR 533

Query: 482 MRKNGLNPDAVTWRIL 497
             + G  P+ VT+  L
Sbjct: 534 ALERGCRPNVVTYSTL 549



 Score =  202 bits (514), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 135/458 (29%), Positives = 223/458 (48%), Gaps = 19/458 (4%)

Query: 29  VVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMF 88
           +V+Y  LI+G C+ G +  A+  F +    G  P  +TYS ++ G+ R  +V++   L+ 
Sbjct: 1   MVTYNVLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLE 60

Query: 89  KLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDS 148
           ++  R       + N   +  LV++L  +G   E F + E M       E    G +I  
Sbjct: 61  EMAGR-----GCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKG 115

Query: 149 LCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPS 208
           LC+ G    A RVV  M  RG  P +  +  ++H LC+ G    A+   ++ +  G+ P 
Sbjct: 116 LCKEGEIEAAFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPD 175

Query: 209 EHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLV 268
             TY  +V+GL     LE A  VLQ +             I +  L    N T       
Sbjct: 176 AVTYNTMVDGLYKAGRLEAAGMVLQLLAESFSSPTVFTFTIAVDGLSKAGNLTGAYEFFD 235

Query: 269 FMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND--MVAGKFCAPDAVTFTTIIFGLL 326
            M QT   P+ +T + +I+G CK G+++ AL +L D    AG F       F++++ GL 
Sbjct: 236 SMPQTGVSPNTVTYDALIDGLCKAGKLDIALGLLRDKNSQAGMF------AFSSLLHGLC 289

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
              R++EA+ LL + MP     P +V +N+++ GL + RRV+EA E+F+ M   G  AD 
Sbjct: 290 QAHRLEEAIQLL-KAMP---CVPNVVCFNSLMNGLCQARRVDEAFELFDVMKESGCSADV 345

Query: 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV-YAAMIKGLCRSGKIHEAVHFLY 445
            TY I++ GLC+  ++ EA R  + +        N V ++ +I+GLC +G++++A     
Sbjct: 346 ITYNILLKGLCKLRRIPEAYRHVELMRRTEGCSPNVVTFSTLIQGLCNAGRVNQAWEVYE 405

Query: 446 ELVD-SGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
            +V   G++PN   Y  +++G CK    R   Q   +M
Sbjct: 406 RMVAVEGISPNRFTYAFLLEGLCKAGDSRRLEQCFEQM 443



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 137/514 (26%), Positives = 239/514 (46%), Gaps = 14/514 (2%)

Query: 1    MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
            +D LC   R+ +AH +F     RG  PNVV+Y+TLI G  +  +MD A ++  +M   G 
Sbjct: 515  LDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGC 574

Query: 61   LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
              N++TYS +V G+L+   +E A V++     R   +     +   +  L+D   +   +
Sbjct: 575  RANTVTYSTVVDGLLKVGRMEDAVVVL-----RQMRDAGCLPDAVTYNTLIDGFFKRQRL 629

Query: 121  NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
             E   +  +M +            +   LCRSGR   A  ++  M  RG  P+ ++Y+SI
Sbjct: 630  REAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSI 689

Query: 181  VHGLCKHGGCMRAYQLLEEGIQFGYL-PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
            V GLCK G    A    E+  +   + P    Y  L++GLC    +++A + L+ M+   
Sbjct: 690  VDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGRIDEAYEFLERMIRAG 749

Query: 240  DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
             +      +I +  LC        L +   M +  C+ D+   N +IN +C  G    A 
Sbjct: 750  RIPDVVTFSILINGLCDAGRIDTGLELFCGMAERGCKADIYAYNAMINAYCLKGEFSAAY 809

Query: 300  KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
             +L +M      A + VT   +I  L    RI EA++  + + P+       ++YN ++ 
Sbjct: 810  ALLEEMKTHGI-AKNTVTHGIVIKALCGNDRIDEAVSYFHSI-PEDCRDE--ISYNTLIT 865

Query: 360  GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
             L   RR E+A E+   M+  G   D+  Y  V+DGL ++   + A +   ++    +  
Sbjct: 866  SLVASRRSEQALELLRAMVADGGSPDACNYMTVMDGLFKAGSPEVAAKLLQEMRSRGHSP 925

Query: 420  DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
            D   Y  MI GL ++ ++  A  +  E++   + P+ + Y+ +ID  CK     +A+++L
Sbjct: 926  DLRTYTIMISGLSKAKQLPLACDYFEEMLRKNLKPDAIVYSSLIDAFCKADKVDDAWKLL 985

Query: 480  REMRKNGLNPDAVTWR-ILDKLHGNRGNDFGLRI 512
               R +G+ P    +  ++D L  NRG D  L +
Sbjct: 986  ---RSSGIEPTITMYSTMVDSLCKNRGTDKALEV 1016



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 135/497 (27%), Positives = 223/497 (44%), Gaps = 81/497 (16%)

Query: 9    RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
            R+ EA  L  +M   G  P+VV+YTTL HG CR+G  D A ++ D M   G  PN++TYS
Sbjct: 628  RLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYS 687

Query: 69   VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
             +V G+ +   V  A       +E+M  +E ++ +  A++ L+D LC+ G ++E +   E
Sbjct: 688  SIVDGLCKAGRVTEA----LGYFEKMARDEVVAPHVIAYSALIDGLCKAGRIDEAYEFLE 743

Query: 129  DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
             M +   + +      +I+ LC +GR      +   M +RG    + +YN++++  C  G
Sbjct: 744  RMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFCGMAERGCKADIYAYNAMINAYCLKG 803

Query: 189  GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
                AY LLEE    G   +  T+ ++++ LCG   +++A  V  F    +D        
Sbjct: 804  EFSAAYALLEEMKTHGIAKNTVTHGIVIKALCGNDRIDEA--VSYFHSIPED-------- 853

Query: 249  IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 308
                                      C+ D I+ NT+I       R E+AL++L  MVA 
Sbjct: 854  --------------------------CR-DEISYNTLITSLVASRRSEQALELLRAMVAD 886

Query: 309  KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE 368
               +PDA  + T++ GL   G  + A  LL Q M  RG+SP + TY  ++ GL + +++ 
Sbjct: 887  GG-SPDACNYMTVMDGLFKAGSPEVAAKLL-QEMRSRGHSPDLRTYTIMISGLSKAKQLP 944

Query: 369  EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI 428
             A + F  ML   +  D+  Y+ +ID  C+++++D+A   W                   
Sbjct: 945  LACDYFEEMLRKNLKPDAIVYSSLIDAFCKADKVDDA---WK------------------ 983

Query: 429  KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLN 488
              L RS  I                P I  Y+ ++D  CK     +A +++REM+     
Sbjct: 984  --LLRSSGIE---------------PTITMYSTMVDSLCKNRGTDKALEVIREMKSKNCE 1026

Query: 489  PDAVTWRILDKLHGNRG 505
            P    W  L   +   G
Sbjct: 1027 PGIHIWTSLATAYVAEG 1043



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 74/250 (29%), Positives = 132/250 (52%), Gaps = 2/250 (0%)

Query: 248 NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA 307
           N+ +  LC      +        +Q   +P V+T +TVI+G C+   +++  K+L +M A
Sbjct: 5   NVLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLEEM-A 63

Query: 308 GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRV 367
           G+ CAP+AVT+ T++  LL  GR +EA +LL + M   G  P ++T+  +++GL +   +
Sbjct: 64  GRGCAPNAVTYNTLVNALLGQGRAKEAFSLL-ERMAANGCPPELITFGLIIKGLCKEGEI 122

Query: 368 EEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAM 427
           E A  V + M+  G V D   + +++  LCE  ++DEA  F+  ++      D   Y  M
Sbjct: 123 EAAFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPDAVTYNTM 182

Query: 428 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
           + GL ++G++  A   L  L +S  +P +  + + +DG  K      AY+    M + G+
Sbjct: 183 VDGLYKAGRLEAAGMVLQLLAESFSSPTVFTFTIAVDGLSKAGNLTGAYEFFDSMPQTGV 242

Query: 488 NPDAVTWRIL 497
           +P+ VT+  L
Sbjct: 243 SPNTVTYDAL 252



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 111/218 (50%), Gaps = 2/218 (0%)

Query: 279 VITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLL 338
           ++T N +ING CK GR+ +A       +   F  P  VT++T+I GL     + +   LL
Sbjct: 1   MVTYNVLINGLCKAGRVCDAFTAFRKAIQFGF-RPTVVTYSTVIDGLCRDNEVDKGCKLL 59

Query: 339 YQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE 398
            + M  RG +P  VTYN ++  L    R +EA  +   M   G   +  T+ ++I GLC+
Sbjct: 60  EE-MAGRGCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGLCK 118

Query: 399 SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVC 458
             +++ A R  D++V    + D  ++  ++  LC  G++ EA  F  +++  G TP+ V 
Sbjct: 119 EGEIEAAFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPDAVT 178

Query: 459 YNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRI 496
           YN ++DG  K      A  +L+ + ++  +P   T+ I
Sbjct: 179 YNTMVDGLYKAGRLEAAGMVLQLLAESFSSPTVFTFTI 216


>gi|22531122|gb|AAM97065.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
 gi|62320656|dbj|BAD95323.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
          Length = 596

 Score =  228 bits (582), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 139/503 (27%), Positives = 249/503 (49%), Gaps = 42/503 (8%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C  S++  A  L   M   G+ P++V+ ++L++GYC    +  A  + D+M   G  P+
Sbjct: 92  FCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPD 151

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           ++T++ L+ G+        A  L+ ++ +R  +      N   +  +V+ LC+ G  +  
Sbjct: 152 TITFTTLIHGLFLHNKASEAVALVDRMVQRGCQP-----NLVTYGVVVNGLCKRGDTDLA 206

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             +   M   K   +      +IDSLC+      A  +   M  +G+ P++V+Y+S++  
Sbjct: 207 LNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISC 266

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LC +G    A QLL + I+    P+  T+  L++    E    +A K+   M+ K+ +D 
Sbjct: 267 LCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMI-KRSID- 324

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                                            PD+ T N+++NGFC   R+++A ++  
Sbjct: 325 ---------------------------------PDIFTYNSLVNGFCMHDRLDKAKQMFE 351

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            MV+ K C PD VT+ T+I G     R+++   L ++ M  RG     VTY  +++GLF 
Sbjct: 352 FMVS-KDCFPDVVTYNTLIKGFCKSKRVEDGTEL-FREMSHRGLVGDTVTYTTLIQGLFH 409

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
               + A++VF  M+  GV  D  TY+I++DGLC + +L++A   +D +       D Y+
Sbjct: 410 DGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYI 469

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y  MI+G+C++GK+ +       L   GV PN+V YN +I G C   + +EAY +L++M+
Sbjct: 470 YTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMK 529

Query: 484 KNGLNPDAVTWRILDKLHGNRGN 506
           ++G  P++ T+  L + H   G+
Sbjct: 530 EDGPLPNSGTYNTLIRAHLRDGD 552



 Score =  206 bits (524), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 148/504 (29%), Positives = 242/504 (48%), Gaps = 49/504 (9%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C   R+ +A  L   M   G+ P+ +++TTLIHG     +   A  + D M   G  PN 
Sbjct: 128 CHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNL 187

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           +TY V+V G+ +  D + A  L+ K+ E  K E D+ +    F  ++DSLC+  +V++  
Sbjct: 188 VTYGVVVNGLCKRGDTDLALNLLNKM-EAAKIEADVVI----FNTIIDSLCKYRHVDDAL 242

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
            + ++M              +I  LC  GR   AS+++  M ++ + P+LV++N+++   
Sbjct: 243 NLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAF 302

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
            K G  + A +L ++ I+    P   TY  LV G C    L+KA+++ +FM+SK      
Sbjct: 303 VKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSK------ 356

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
                                         C PDV+T NT+I GFCK  R+E+  ++  +
Sbjct: 357 -----------------------------DCFPDVVTYNTLIKGFCKSKRVEDGTELFRE 387

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
           M + +    D VT+TT+I GL + G    A  +  Q M   G  P I+TY+ +L GL   
Sbjct: 388 M-SHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQ-MVSDGVPPDIMTYSILLDGLCNN 445

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS--NIHDNY 422
            ++E+A EVF+ M    +  D   Y  +I+G+C++ ++D+    WD     S   +  N 
Sbjct: 446 GKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDG---WDLFCSLSLKGVKPNV 502

Query: 423 V-YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
           V Y  MI GLC    + EA   L ++ + G  PN   YN +I    +   K  + +++RE
Sbjct: 503 VTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIRE 562

Query: 482 MRKNGLNPDAVTWRIL-DKLHGNR 504
           MR      DA T  ++ + LH  R
Sbjct: 563 MRSCRFVGDASTIGLVANMLHDGR 586



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 107/407 (26%), Positives = 185/407 (45%), Gaps = 10/407 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC       A  L   M++     +VV + T+I   C+   +D A  +F EM   G+ PN
Sbjct: 197 LCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPN 256

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TYS L+  +        A+ L+  + E+      ++ N   F  L+D+  +EG   E 
Sbjct: 257 VVTYSSLISCLCSYGRWSDASQLLSDMIEK-----KINPNLVTFNALIDAFVKEGKFVEA 311

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            ++ +DM +     + F    +++  C   R   A ++   M  +   P +V+YN+++ G
Sbjct: 312 EKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKG 371

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK        +L  E    G +    TY  L++GL  + D + A+KV + M+S      
Sbjct: 372 FCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPD 431

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               +I L  LC      + L V  +M +++ + D+    T+I G CK G++++   +  
Sbjct: 432 IMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFC 491

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            + + K   P+ VT+ T+I GL +   +QEA  LL + M + G  P   TYN ++R   R
Sbjct: 492 SL-SLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKK-MKEDGPLPNSGTYNTLIRAHLR 549

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD 410
                 + E+   M     V D++T  +V + L    +LD  K F D
Sbjct: 550 DGDKAASAELIREMRSCRFVGDASTIGLVANML-HDGRLD--KSFLD 593



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 44/79 (55%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ +C   +V +   LF  +  +G  PNVV+Y T+I G C    +  AY +  +M+  G 
Sbjct: 474 IEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGP 533

Query: 61  LPNSLTYSVLVRGVLRTRD 79
           LPNS TY+ L+R  LR  D
Sbjct: 534 LPNSGTYNTLIRAHLRDGD 552



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 78/154 (50%), Gaps = 6/154 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   ++ +A ++F  M+      ++  YTT+I G C+ G++D  + +F  +   GV
Sbjct: 439 LDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGV 498

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +TY+ ++ G+   R ++ A    + L ++MKE+  L  N+  +  L+ +  R+G  
Sbjct: 499 KPNVVTYNTMISGLCSKRLLQEA----YALLKKMKEDGPLP-NSGTYNTLIRAHLRDGDK 553

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGR 154
                +  +M   + V +    G ++ ++   GR
Sbjct: 554 AASAELIREMRSCRFVGDASTIG-LVANMLHDGR 586


>gi|15221515|ref|NP_176447.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213223|sp|Q9SXD8.1|PPR90_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62590
 gi|5454201|gb|AAD43616.1|AC005698_15 T3P18.15 [Arabidopsis thaliana]
 gi|332195860|gb|AEE33981.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 634

 Score =  228 bits (581), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 139/503 (27%), Positives = 249/503 (49%), Gaps = 42/503 (8%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C  S++  A  L   M   G+ P++V+ ++L++GYC    +  A  + D+M   G  P+
Sbjct: 130 FCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPD 189

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           ++T++ L+ G+        A  L+ ++ +R  +      N   +  +V+ LC+ G  +  
Sbjct: 190 TITFTTLIHGLFLHNKASEAVALVDRMVQRGCQP-----NLVTYGVVVNGLCKRGDTDLA 244

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             +   M   K   +      +IDSLC+      A  +   M  +G+ P++V+Y+S++  
Sbjct: 245 LNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISC 304

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LC +G    A QLL + I+    P+  T+  L++    E    +A K+   M+ K+ +D 
Sbjct: 305 LCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMI-KRSID- 362

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                                            PD+ T N+++NGFC   R+++A ++  
Sbjct: 363 ---------------------------------PDIFTYNSLVNGFCMHDRLDKAKQMFE 389

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            MV+ K C PD VT+ T+I G     R+++   L ++ M  RG     VTY  +++GLF 
Sbjct: 390 FMVS-KDCFPDVVTYNTLIKGFCKSKRVEDGTEL-FREMSHRGLVGDTVTYTTLIQGLFH 447

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
               + A++VF  M+  GV  D  TY+I++DGLC + +L++A   +D +       D Y+
Sbjct: 448 DGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYI 507

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y  MI+G+C++GK+ +       L   GV PN+V YN +I G C   + +EAY +L++M+
Sbjct: 508 YTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMK 567

Query: 484 KNGLNPDAVTWRILDKLHGNRGN 506
           ++G  P++ T+  L + H   G+
Sbjct: 568 EDGPLPNSGTYNTLIRAHLRDGD 590



 Score =  206 bits (524), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 148/504 (29%), Positives = 242/504 (48%), Gaps = 49/504 (9%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C   R+ +A  L   M   G+ P+ +++TTLIHG     +   A  + D M   G  PN 
Sbjct: 166 CHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNL 225

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           +TY V+V G+ +  D + A  L+ K+ E  K E D+ +    F  ++DSLC+  +V++  
Sbjct: 226 VTYGVVVNGLCKRGDTDLALNLLNKM-EAAKIEADVVI----FNTIIDSLCKYRHVDDAL 280

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
            + ++M              +I  LC  GR   AS+++  M ++ + P+LV++N+++   
Sbjct: 281 NLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAF 340

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
            K G  + A +L ++ I+    P   TY  LV G C    L+KA+++ +FM+SK      
Sbjct: 341 VKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSK------ 394

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
                                         C PDV+T NT+I GFCK  R+E+  ++  +
Sbjct: 395 -----------------------------DCFPDVVTYNTLIKGFCKSKRVEDGTELFRE 425

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
           M + +    D VT+TT+I GL + G    A  +  Q M   G  P I+TY+ +L GL   
Sbjct: 426 M-SHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQ-MVSDGVPPDIMTYSILLDGLCNN 483

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS--NIHDNY 422
            ++E+A EVF+ M    +  D   Y  +I+G+C++ ++D+    WD     S   +  N 
Sbjct: 484 GKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDG---WDLFCSLSLKGVKPNV 540

Query: 423 V-YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
           V Y  MI GLC    + EA   L ++ + G  PN   YN +I    +   K  + +++RE
Sbjct: 541 VTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIRE 600

Query: 482 MRKNGLNPDAVTWRIL-DKLHGNR 504
           MR      DA T  ++ + LH  R
Sbjct: 601 MRSCRFVGDASTIGLVANMLHDGR 624



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 107/407 (26%), Positives = 185/407 (45%), Gaps = 10/407 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC       A  L   M++     +VV + T+I   C+   +D A  +F EM   G+ PN
Sbjct: 235 LCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPN 294

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TYS L+  +        A+ L+  + E+      ++ N   F  L+D+  +EG   E 
Sbjct: 295 VVTYSSLISCLCSYGRWSDASQLLSDMIEK-----KINPNLVTFNALIDAFVKEGKFVEA 349

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            ++ +DM +     + F    +++  C   R   A ++   M  +   P +V+YN+++ G
Sbjct: 350 EKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKG 409

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK        +L  E    G +    TY  L++GL  + D + A+KV + M+S      
Sbjct: 410 FCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPD 469

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               +I L  LC      + L V  +M +++ + D+    T+I G CK G++++   +  
Sbjct: 470 IMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFC 529

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            + + K   P+ VT+ T+I GL +   +QEA  LL + M + G  P   TYN ++R   R
Sbjct: 530 SL-SLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKK-MKEDGPLPNSGTYNTLIRAHLR 587

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD 410
                 + E+   M     V D++T  +V + L    +LD  K F D
Sbjct: 588 DGDKAASAELIREMRSCRFVGDASTIGLVANML-HDGRLD--KSFLD 631



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 44/79 (55%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ +C   +V +   LF  +  +G  PNVV+Y T+I G C    +  AY +  +M+  G 
Sbjct: 512 IEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGP 571

Query: 61  LPNSLTYSVLVRGVLRTRD 79
           LPNS TY+ L+R  LR  D
Sbjct: 572 LPNSGTYNTLIRAHLRDGD 590



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 78/154 (50%), Gaps = 6/154 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   ++ +A ++F  M+      ++  YTT+I G C+ G++D  + +F  +   GV
Sbjct: 477 LDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGV 536

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +TY+ ++ G+   R ++ A    + L ++MKE+  L  N+  +  L+ +  R+G  
Sbjct: 537 KPNVVTYNTMISGLCSKRLLQEA----YALLKKMKEDGPLP-NSGTYNTLIRAHLRDGDK 591

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGR 154
                +  +M   + V +    G ++ ++   GR
Sbjct: 592 AASAELIREMRSCRFVGDASTIG-LVANMLHDGR 624


>gi|302762244|ref|XP_002964544.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
 gi|300168273|gb|EFJ34877.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
          Length = 528

 Score =  228 bits (581), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 142/492 (28%), Positives = 247/492 (50%), Gaps = 21/492 (4%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R+  A  ++  M    H P+ ++YT L+HG  +   +  A +V  EM     +P+
Sbjct: 15  LCRAGRLRHALGVYRQMND-AHPPDFLTYTKLVHGLSKARRLRDAVQVLQEMVSARHVPD 73

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           + T +V+V+ +     V+ A  L+ ++  R      ++ N   ++ LVD LC+   ++E 
Sbjct: 74  NTTLTVVVQSLCLGDRVDDARELVEEMLHR-----GMAANAITYSALVDGLCKCERLDEA 128

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             + E M +            +I   CR+ R   A   +  M   G  P +++Y +++ G
Sbjct: 129 VALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDIITYTALIGG 188

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK     R  +LL E  + G+ P   TY  +++GLC    L  A  + + M        
Sbjct: 189 FCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMSCAP---- 244

Query: 244 TRIC-NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
           T I  N  +   C   +  E + +L  M+  +C PDV+T  T+++ FCKMGR+++A ++ 
Sbjct: 245 TAITYNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRLDDAYELF 304

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
             MVA K  +PD VTFT+++ GL   GR+++AL LL ++  +RG  P I TYN V+ G  
Sbjct: 305 QQMVANKL-SPDVVTFTSLVDGLCGEGRMEDALELLEEIT-RRGCPPTIYTYNCVVDGYC 362

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI-----VWPSN 417
           +  +V +A+E+       G V ++ TY I++ G C + + D+A ++ D +       P++
Sbjct: 363 KANQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTS 422

Query: 418 IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQ 477
           +    +YA ++  LCR G+  +AV F  E++  G  P    +  V+   CK    ++A++
Sbjct: 423 VA---MYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHE 479

Query: 478 ILREMRKNGLNP 489
           +L EM K G  P
Sbjct: 480 LLEEMIKYGHTP 491



 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 117/451 (25%), Positives = 209/451 (46%), Gaps = 51/451 (11%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   R+ EA  L   M  RG  P VV+Y ++I G+CR   +D A+   ++M   G 
Sbjct: 116 VDGLCKCERLDEAVALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGC 175

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TY+ L+ G  ++RDV R   L+ ++  R       + +   ++ ++D LC+ G +
Sbjct: 176 HPDIITYTALIGGFCKSRDVGRGLELLGEVTRR-----GFTPDIVTYSTVIDGLCKAGRL 230

Query: 121 NEVFRIAEDM---PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
            +   I E+M   P   + N       +I   CR+G    A R++  M      P +V+Y
Sbjct: 231 RDAVDIFEEMSCAPTAITYNS------LIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTY 284

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
            +++   CK G    AY+L ++ +     P   T+  LV+GLCGE  +E A ++L+ +  
Sbjct: 285 TTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITR 344

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
           +                                    C P + T N V++G+CK  ++ +
Sbjct: 345 RG-----------------------------------CPPTIYTYNCVVDGYCKANQVRK 369

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSP-GIVTYNA 356
           A +++ D  +  F  P+ VT+  ++ G    GR  +AL  L Q+  + G  P  +  Y  
Sbjct: 370 AEELVADFRSRGF-VPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAI 428

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416
           +L  L R  R ++A + +  M+  G V  + T+A V+  LC+++Q  +A    ++++   
Sbjct: 429 ILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHELLEEMIKYG 488

Query: 417 NIHDNYVYAAMIKGLCRSGKIHEAVHFLYEL 447
           +        A++   CR+G I +A     EL
Sbjct: 489 HTPGPGTCDAVVSAYCRAGMIQKADELASEL 519



 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 111/385 (28%), Positives = 189/385 (49%), Gaps = 35/385 (9%)

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
           +I  LCR+GR   A  V Y        P  ++Y  +VHGL K      A Q+L+E +   
Sbjct: 11  VIGGLCRAGRLRHALGV-YRQMNDAHPPDFLTYTKLVHGLSKARRLRDAVQVLQEMVSAR 69

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL 264
           ++P   T  V+V+ LC    ++ AR++++ ML +         +  +  LC  +   E +
Sbjct: 70  HVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAV 129

Query: 265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 324
            ++  M +  C P V+T N++I GFC+  R++EA   +  MVA + C PD +T+T +I G
Sbjct: 130 ALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVA-EGCHPDIITYTALIGG 188

Query: 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVF---------- 374
                 +   L LL +V  +RG++P IVTY+ V+ GL +  R+ +A ++F          
Sbjct: 189 FCKSRDVGRGLELLGEVT-RRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMSCAPTAI 247

Query: 375 --NCMLG--------------IGVVADS------TTYAIVIDGLCESNQLDEAKRFWDDI 412
             N ++G              +G + D        TY  ++   C+  +LD+A   +  +
Sbjct: 248 TYNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRLDDAYELFQQM 307

Query: 413 VWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMK 472
           V      D   + +++ GLC  G++ +A+  L E+   G  P I  YN V+DG CK +  
Sbjct: 308 VANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKANQV 367

Query: 473 REAYQILREMRKNGLNPDAVTWRIL 497
           R+A +++ + R  G  P+ VT+ IL
Sbjct: 368 RKAEELVADFRSRGFVPNTVTYNIL 392



 Score =  174 bits (442), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 116/483 (24%), Positives = 223/483 (46%), Gaps = 47/483 (9%)

Query: 3   QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
            LC   RV +A +L  +M  RG   N ++Y+ L+ G C+   +D A  + + M   G  P
Sbjct: 83  SLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAVALVETMAERGCAP 142

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
             +TY+ ++ G  R R V+ A+  M ++       E    +   +  L+   C+      
Sbjct: 143 TVVTYNSIITGFCRARRVDEAHGFMEQMV-----AEGCHPDIITYTALIGGFCK------ 191

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
               + D+ +G  +  E                        V R+ G TP +V+Y++++ 
Sbjct: 192 ----SRDVGRGLELLGE------------------------VTRR-GFTPDIVTYSTVID 222

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           GLCK G    A  + EE       P+  TY  L+ G C   D+++A ++L  M+  K   
Sbjct: 223 GLCKAGRLRDAVDIFEE---MSCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDKCAP 279

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
                   + A C +    +   +   M+  +  PDV+T  ++++G C  GR+E+AL++L
Sbjct: 280 DVVTYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELL 339

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
            + +  + C P   T+  ++ G     ++++A  L+      RG+ P  VTYN ++ G  
Sbjct: 340 EE-ITRRGCPPTIYTYNCVVDGYCKANQVRKAEELVADFR-SRGFVPNTVTYNILVAGCC 397

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTT--YAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           R  R ++A +  + +   G    ++   YAI++D LC   + D+A +F+++++    +  
Sbjct: 398 RAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPA 457

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              +A ++  LC++ +  +A   L E++  G TP     + V+   C+  M ++A ++  
Sbjct: 458 AATFATVVFALCKAHQPQQAHELLEEMIKYGHTPGPGTCDAVVSAYCRAGMIQKADELAS 517

Query: 481 EMR 483
           E+R
Sbjct: 518 ELR 520



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 120/225 (53%), Gaps = 4/225 (1%)

Query: 277 PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALN 336
           P  +  N VI G C+ GR+  AL V   M       PD +T+T ++ GL    R+++A+ 
Sbjct: 3   PGTLLHNVVIGGLCRAGRLRHALGVYRQMNDAH--PPDFLTYTKLVHGLSKARRLRDAVQ 60

Query: 337 LLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 396
           +L +++  R + P   T   V++ L    RV++A+E+   ML  G+ A++ TY+ ++DGL
Sbjct: 61  VLQEMVSAR-HVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGL 119

Query: 397 CESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNI 456
           C+  +LDEA    + +           Y ++I G CR+ ++ EA  F+ ++V  G  P+I
Sbjct: 120 CKCERLDEAVALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDI 179

Query: 457 VCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWR-ILDKL 500
           + Y  +I G CK        ++L E+ + G  PD VT+  ++D L
Sbjct: 180 ITYTALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGL 224


>gi|242055005|ref|XP_002456648.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
 gi|241928623|gb|EES01768.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
          Length = 702

 Score =  228 bits (581), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 146/493 (29%), Positives = 242/493 (49%), Gaps = 8/493 (1%)

Query: 3   QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
            LC    V  A  LF  ++ RG  P+ V+Y+TL+ G  +  ++D A  + DEM + GV  
Sbjct: 167 SLCARGDVDRAVSLFSSLRRRGVAPDRVTYSTLMSGLAKHDQLDNALDLLDEMPNYGVQA 226

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           +++ Y+ L+ G  RT   E+A     K+WE++  +   S N A +  ++D LC+ G   E
Sbjct: 227 DAVCYNALLSGCFRTGMFEKA----MKVWEQLVRDPGASPNLATYKVMLDGLCKLGRFKE 282

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
              +   M       +    G +I  LCRSG    A+RV   M K GL   +  YNS++ 
Sbjct: 283 AGEVWSRMMANNHQADTVTYGILIHGLCRSGDVDSAARVYSDMVKAGLVLDVSVYNSLIK 342

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           G C+ G    A++  +    F  +    TY ++ +GL     + +A ++L+ + +     
Sbjct: 343 GFCEVGRTGEAWKFWDS-TGFSGIRQITTYNIMTKGLLDSGMVSEATELLKQLENDASCS 401

Query: 243 RTRIC-NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
             ++     +  LC          +L     +  + DV + +++IN FCK GR  +A +V
Sbjct: 402 PDKVTFGTLIHGLCENGYANRAFEILEDARNSGEELDVFSYSSMINRFCKDGRTHDANEV 461

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
             +MV    C P++  +  +I G   V +I +A+ + Y  M   G  P I+TYN ++ GL
Sbjct: 462 YKNMVKDG-CKPNSHVYNALINGFCRVSKINDAIKI-YIEMTSNGCCPTIITYNTLIDGL 519

Query: 362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
            +  + +EA  +   ML  G   D  TYA +I GLC   ++D A R WD+I+      D 
Sbjct: 520 CKAEKYQEASSLTKEMLERGFKPDIRTYASLIRGLCRDKKVDVALRIWDEILDAGLQVDV 579

Query: 422 YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
            V+  +I GLC +GK+ EA     E+ +   +PN+V YN ++DG  ++    +A  +   
Sbjct: 580 MVHNILIHGLCSAGKVDEAFCIYLEMKEKNCSPNLVTYNTLMDGFYEIGSIDKAASLWTA 639

Query: 482 MRKNGLNPDAVTW 494
           +  NGL PD VT+
Sbjct: 640 ILDNGLKPDIVTY 652



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 119/423 (28%), Positives = 201/423 (47%), Gaps = 32/423 (7%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC L R  EA +++  M +  H  + V+Y  LIHG CR+G++D A +V+ +M   G+
Sbjct: 271 LDGLCKLGRFKEAGEVWSRMMANNHQADTVTYGILIHGLCRSGDVDSAARVYSDMVKAGL 330

Query: 61  LPNSLTYSVLVRG---VLRT---------------RDVERANVLM------------FKL 90
           + +   Y+ L++G   V RT               R +   N++              +L
Sbjct: 331 VLDVSVYNSLIKGFCEVGRTGEAWKFWDSTGFSGIRQITTYNIMTKGLLDSGMVSEATEL 390

Query: 91  WERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC 150
            ++++ +   S +   F  L+  LC  GY N  F I ED        + F+   MI+  C
Sbjct: 391 LKQLENDASCSPDKVTFGTLIHGLCENGYANRAFEILEDARNSGEELDVFSYSSMINRFC 450

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
           + GR H A+ V   M K G  P+   YN++++G C+      A ++  E    G  P+  
Sbjct: 451 KDGRTHDANEVYKNMVKDGCKPNSHVYNALINGFCRVSKINDAIKIYIEMTSNGCCPTII 510

Query: 211 TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM 270
           TY  L++GLC     ++A  + + ML +      R     +R LC  K     L +   +
Sbjct: 511 TYNTLIDGLCKAEKYQEASSLTKEMLERGFKPDIRTYASLIRGLCRDKKVDVALRIWDEI 570

Query: 271 LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR 330
           L    Q DV+  N +I+G C  G+++EA  +  +M   K C+P+ VT+ T++ G   +G 
Sbjct: 571 LDAGLQVDVMVHNILIHGLCSAGKVDEAFCIYLEM-KEKNCSPNLVTYNTLMDGFYEIGS 629

Query: 331 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYA 390
           I +A +L   ++   G  P IVTYN  ++GL    R  E   + N +L  G++    T++
Sbjct: 630 IDKAASLWTAIL-DNGLKPDIVTYNTRIKGLCSCNRTPEGVLLLNEVLATGIMPTVITWS 688

Query: 391 IVI 393
           I++
Sbjct: 689 ILV 691



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 133/504 (26%), Positives = 222/504 (44%), Gaps = 51/504 (10%)

Query: 17  FFDMKSR-GHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCG----VLPNSLTYSVLV 71
           F D+ S  G  P V S+ TL+  + R      A   F  + H      + PN  TY++++
Sbjct: 106 FRDLPSLLGCNPGVRSHNTLLDAFVRARRYSDADAFFASLSHGAFGRRIAPNLQTYNIIL 165

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP 131
           R +    DV+RA  L   L  R      ++ +   ++ L+  L +   ++    + ++MP
Sbjct: 166 RSLCARGDVDRAVSLFSSLRRR-----GVAPDRVTYSTLMSGLAKHDQLDNALDLLDEMP 220

Query: 132 QGKSVNEEFACGHMIDSLC-RSGRNHGASRVV-YVMRKRGLTPSLVSYNSIVHGLCKHGG 189
               V  +  C + + S C R+G    A +V   ++R  G +P+L +Y  ++ GLCK G 
Sbjct: 221 N-YGVQADAVCYNALLSGCFRTGMFEKAMKVWEQLVRDPGASPNLATYKVMLDGLCKLGR 279

Query: 190 CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNI 249
              A ++    +   +     TY +L+ GLC   D++ A +V   M+             
Sbjct: 280 FKEAGEVWSRMMANNHQADTVTYGILIHGLCRSGDVDSAARVYSDMVKAG---------- 329

Query: 250 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK 309
                            LV         DV   N++I GFC++GR  EA K  +    G 
Sbjct: 330 -----------------LVL--------DVSVYNSLIKGFCEVGRTGEAWKFWDS--TGF 362

Query: 310 FCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEE 369
                  T+  +  GLL+ G + EA  LL Q+      SP  VT+  ++ GL        
Sbjct: 363 SGIRQITTYNIMTKGLLDSGMVSEATELLKQLENDASCSPDKVTFGTLIHGLCENGYANR 422

Query: 370 AKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIK 429
           A E+       G   D  +Y+ +I+  C+  +  +A   + ++V      +++VY A+I 
Sbjct: 423 AFEILEDARNSGEELDVFSYSSMINRFCKDGRTHDANEVYKNMVKDGCKPNSHVYNALIN 482

Query: 430 GLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNP 489
           G CR  KI++A+    E+  +G  P I+ YN +IDG CK    +EA  + +EM + G  P
Sbjct: 483 GFCRVSKINDAIKIYIEMTSNGCCPTIITYNTLIDGLCKAEKYQEASSLTKEMLERGFKP 542

Query: 490 DAVTWRILDK-LHGNRGNDFGLRI 512
           D  T+  L + L  ++  D  LRI
Sbjct: 543 DIRTYASLIRGLCRDKKVDVALRI 566



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 132/296 (44%), Gaps = 40/296 (13%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +++ C   R  +A++++ +M   G  PN   Y  LI+G+CR  +++ A K++ EM   G 
Sbjct: 446 INRFCKDGRTHDANEVYKNMVKDGCKPNSHVYNALINGFCRVSKINDAIKIYIEMTSNGC 505

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P  +TY+ L+ G+ +    + A+ L  ++ ER         +   +A+L+  LCR+  V
Sbjct: 506 CPTIITYNTLIDGLCKAEKYQEASSLTKEMLER-----GFKPDIRTYASLIRGLCRDKKV 560

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +   RI +++       +      +I  LC +G+   A  +   M+++  +P+LV+YN++
Sbjct: 561 DVALRIWDEILDAGLQVDVMVHNILIHGLCSAGKVDEAFCIYLEMKEKNCSPNLVTYNTL 620

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G  + G   +A  L    +  G  P   TY   ++GLC                    
Sbjct: 621 MDGFYEIGSIDKAASLWTAILDNGLKPDIVTYNTRIKGLCS------------------- 661

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIE 296
                 CN         + P  +L +L  +L T   P VIT + ++    K G I+
Sbjct: 662 ------CN---------RTPEGVL-LLNEVLATGIMPTVITWSILVRAVIKYGPIQ 701


>gi|302781562|ref|XP_002972555.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
 gi|300160022|gb|EFJ26641.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
          Length = 564

 Score =  228 bits (581), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 151/501 (30%), Positives = 249/501 (49%), Gaps = 38/501 (7%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC  + +G   +LF ++  RGH P+VV+Y TLI   C+ G+++ A ++  +M   G 
Sbjct: 44  INGLCKSNDLGAGMELFEELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGC 103

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +PN +TYSVL+ G+ +   ++ A  L   + E  ++  D+  N   + + +D LC++   
Sbjct: 104 VPNVVTYSVLINGLCKVGRIDEAREL---IQEMTRKSCDVLPNIITYNSFLDGLCKQSMT 160

Query: 121 NEVFRIAEDMPQG--KSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
            E   +   +  G  +   +      +ID LC+ G+   A  V   M   G  P++++YN
Sbjct: 161 AEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYN 220

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
           ++V+GLCK     RA+ ++E  +  G  P   TY VLV+  C  S +++A ++L  M S 
Sbjct: 221 ALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMAS- 279

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
                 R C                 NVLV        PD +T N +I G CK G  E+A
Sbjct: 280 ------RGCTP---------------NVLV--------PDKVTFNILIAGACKAGNFEQA 310

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
             +  +MVA K   PD +TF  +I GL   G+++ A ++L  +M   G  P +VTYNA++
Sbjct: 311 SALFEEMVA-KNLQPDVMTFGALIDGLCKAGQVEAARDIL-DLMGNLGVPPNVVTYNALV 368

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
            GL +  R+EEA +    M+  G V DS TY  ++  LC +++ D+A +   ++      
Sbjct: 369 HGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWD 428

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI 478
            D   Y  ++ GL +SGK  +A+  L E+V  G  P+   +     G  +        ++
Sbjct: 429 PDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAACFSGLHRSGNLAGTMEL 488

Query: 479 LREMRKNGLNPDAVTW-RILD 498
           LR +   G+ PDA T   ILD
Sbjct: 489 LRVVLAKGMLPDATTCSSILD 509



 Score =  225 bits (574), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 137/477 (28%), Positives = 245/477 (51%), Gaps = 19/477 (3%)

Query: 29  VVSYTTLIHGYCRTGEMDVAYKVF-DEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLM 87
           V  Y  ++   CR G+   A ++F  EM   GV P  +TY+ ++ G+ ++ D+     L 
Sbjct: 1   VADYNIVLQSLCRAGDTARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELF 60

Query: 88  FKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMID 147
            +L ER    + ++ N      L+DSLC+ G + E  R+  DM     V        +I+
Sbjct: 61  EELVERGHHPDVVTYNT-----LIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLIN 115

Query: 148 SLCRSGRNHGASRVVYVMRKRG--LTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY 205
            LC+ GR   A  ++  M ++   + P++++YNS + GLCK      A +L+   ++ G 
Sbjct: 116 GLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRS-LRDGS 174

Query: 206 L---PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTE 262
           L   P   T+  L++GLC    +++A  V   M++   V      N  +  LC       
Sbjct: 175 LRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMER 234

Query: 263 LLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAP-----DAVT 317
              ++  M+     PDVIT + +++ FCK  R++EAL++L+ M A + C P     D VT
Sbjct: 235 AHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGM-ASRGCTPNVLVPDKVT 293

Query: 318 FTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCM 377
           F  +I G    G  ++A + L++ M  +   P ++T+ A++ GL +  +VE A+++ + M
Sbjct: 294 FNILIAGACKAGNFEQA-SALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLM 352

Query: 378 LGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKI 437
             +GV  +  TY  ++ GLC+S +++EA +F +++V    + D+  Y +++  LCR+ + 
Sbjct: 353 GNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRT 412

Query: 438 HEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
            +A+  + EL   G  P+ V YN+++DG  K     +A  +L EM   G  PD+ T+
Sbjct: 413 DDALQLVSELKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTF 469



 Score =  220 bits (561), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 132/454 (29%), Positives = 227/454 (50%), Gaps = 12/454 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEM--RHC 58
           +D LC    + EA +L  DM SRG VPNVV+Y+ LI+G C+ G +D A ++  EM  + C
Sbjct: 79  IDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSC 138

Query: 59  GVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREG 118
            VLPN +TY+  + G+ +      A  LM  L +       +S +   F+ L+D LC+ G
Sbjct: 139 DVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLR---VSPDTVTFSTLIDGLCKCG 195

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
            ++E   + +DM  G  V        +++ LC++ +   A  ++  M  +G+TP +++Y+
Sbjct: 196 QIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYS 255

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFG-----YLPSEHTYKVLVEGLCGESDLEKARKVLQ 233
            +V   CK      A +LL      G      +P + T+ +L+ G C   + E+A  + +
Sbjct: 256 VLVDAFCKASRVDEALELLHGMASRGCTPNVLVPDKVTFNILIAGACKAGNFEQASALFE 315

Query: 234 FMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMG 293
            M++K            +  LC         ++L  M      P+V+T N +++G CK G
Sbjct: 316 EMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSG 375

Query: 294 RIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVT 353
           RIEEA + L +MV+   C PD++T+ ++++ L    R  +AL L+ + +   G+ P  VT
Sbjct: 376 RIEEACQFLEEMVSSG-CVPDSITYGSLVYALCRASRTDDALQLVSE-LKSFGWDPDTVT 433

Query: 354 YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413
           YN ++ GL++  + E+A  V   M+G G   DS T+A    GL  S  L         ++
Sbjct: 434 YNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAACFSGLHRSGNLAGTMELLRVVL 493

Query: 414 WPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYEL 447
               + D    ++++  +CRSGK+ +    + E 
Sbjct: 494 AKGMLPDATTCSSILDWVCRSGKLDDVKAMIKEF 527


>gi|302775073|ref|XP_002970953.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
 gi|300161664|gb|EFJ28279.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
          Length = 577

 Score =  227 bits (579), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 149/515 (28%), Positives = 249/515 (48%), Gaps = 24/515 (4%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC + R+ EA  L   +   G  P+VV+YT+LI G  +      AYK+F EM   G+
Sbjct: 28  LNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGL 87

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             +++ Y+ L+R +L+T  + +A+     +++ M     +  +    + ++D L + G +
Sbjct: 88  ALDTVCYTALIRELLQTGKIPQAS----SVYKTMTSHGCVP-DVVTLSTMIDGLSKAGRI 142

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
               RI + M        E     +I  LC++ +   A  ++  M+K   TP  ++YN +
Sbjct: 143 GAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNVL 202

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GLCK G    A    +E ++ G  P  +TY +L+ G C   + + A   L        
Sbjct: 203 IDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAASHSL-------- 254

Query: 241 VDRTRI--CNIYLRALCLI-------KNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK 291
              T I  C I +     I       K   E + ++  +    C P + T N ++NG CK
Sbjct: 255 AQETTINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANGCTPTIATYNALLNGLCK 314

Query: 292 MGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGI 351
           MGR+EEA+ +L  +V    C PD VT+T++I GL    R  EA  L ++ M  RG +   
Sbjct: 315 MGRLEEAIDLLRKIVDNG-CTPDVVTYTSLIDGLGKEKRSFEAYKL-FKEMALRGLALDT 372

Query: 352 VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDD 411
           V Y A++R L +  ++ +A  V+  M   G V D  T + +IDGL ++ ++  A R +  
Sbjct: 373 VCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKS 432

Query: 412 IVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSM 471
           +       +  VY+A+I GLC++ K+  A+  L ++  +  TP+ + YN++IDG CK   
Sbjct: 433 MEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGD 492

Query: 472 KREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
              A     EM + G  PD  T+ IL       GN
Sbjct: 493 VEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGN 527



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 109/341 (31%), Positives = 171/341 (50%), Gaps = 3/341 (0%)

Query: 169 GLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKA 228
           G TP++ +YN++++GLCK G    A  LL + +  G  P   TY  L++GL  E    +A
Sbjct: 16  GCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEA 75

Query: 229 RKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVING 288
            K+ + M  +     T      +R L       +  +V   M    C PDV+TL+T+I+G
Sbjct: 76  YKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDG 135

Query: 289 FCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYS 348
             K GRI  A+++   M A +  AP+ V ++ +I GL    ++  AL +L Q M +   +
Sbjct: 136 LSKAGRIGAAVRIFKSMEA-RGLAPNEVVYSALIHGLCKARKMDCALEMLAQ-MKKAFCT 193

Query: 349 PGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKR- 407
           P  +TYN ++ GL +   VE A+  F+ ML  G   D  TY I+I G C++   D A   
Sbjct: 194 PDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAASHS 253

Query: 408 FWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGAC 467
              +        D + Y A++  L ++ KI EAV  + ++  +G TP I  YN +++G C
Sbjct: 254 LAQETTINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANGCTPTIATYNALLNGLC 313

Query: 468 KLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGNDF 508
           K+    EA  +LR++  NG  PD VT+  L    G     F
Sbjct: 314 KMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSF 354



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 125/530 (23%), Positives = 214/530 (40%), Gaps = 115/530 (21%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           ++ EA  L   + + G  P + +Y  L++G C+ G ++ A  +  ++   G  P+ +T  
Sbjct: 1   KIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVT-- 58

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
                                                 + +L+D L +E    E +++ +
Sbjct: 59  --------------------------------------YTSLIDGLGKEKRSFEAYKLFK 80

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
           +M       +      +I  L ++G+   AS V   M   G  P +V+ ++++ GL K G
Sbjct: 81  EMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAG 140

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
               A ++ +     G  P+E  Y  L+ GLC      KARK+                 
Sbjct: 141 RIGAAVRIFKSMEARGLAPNEVVYSALIHGLC------KARKM----------------- 177

Query: 249 IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 308
                          L +L  M +  C PD IT N +I+G CK G +E A    ++M+  
Sbjct: 178 ------------DCALEMLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEA 225

Query: 309 KFCAPDAVTFTTIIFGLLNVG------------------------------------RIQ 332
             C PD  T+  +I G    G                                    +I+
Sbjct: 226 G-CKPDVYTYNILISGFCKAGNTDAASHSLAQETTINGCTIDIHTYTAIVDWLAKNKKIE 284

Query: 333 EALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIV 392
           EA+ L+ ++    G +P I TYNA+L GL ++ R+EEA ++   ++  G   D  TY  +
Sbjct: 285 EAVALMEKITAN-GCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSL 343

Query: 393 IDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGV 452
           IDGL +  +  EA + + ++       D   Y A+I+ L ++GKI +A      +   G 
Sbjct: 344 IDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGC 403

Query: 453 TPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
            P++V  + +IDG  K      A +I + M   GL P+ V +  L  +HG
Sbjct: 404 VPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSAL--IHG 451



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 47/93 (50%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    V  A   F +M   G  P+V +Y  LI G+C+ G  D A  VFD+M     
Sbjct: 484 IDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRC 543

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWER 93
             N +TY  L+ G+ + R + +A++    + ER
Sbjct: 544 SANVVTYGALISGLCKRRQLTKASLYFQHMKER 576


>gi|12324362|gb|AAG52154.1|AC022355_15 unknown protein; 19199-17308 [Arabidopsis thaliana]
          Length = 558

 Score =  227 bits (578), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 141/505 (27%), Positives = 252/505 (49%), Gaps = 49/505 (9%)

Query: 2   DQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVL 61
           D +  L+ +G+  KL       G+ P++V+ ++L++GYC    +  A  + D+M   G  
Sbjct: 59  DLVISLALLGKMMKL-------GYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYR 111

Query: 62  PNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVN 121
           P+++T++ L+ G+        A  L+ ++ +R  +      N   +  +V+ LC+ G ++
Sbjct: 112 PDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQP-----NLVTYGVVVNGLCKRGDID 166

Query: 122 EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
             F +   M   K   +      +IDSLC+      A  +   M  +G+ P++V+Y+S++
Sbjct: 167 LAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLI 226

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
             LC +G    A QLL + I+    P+  T+  L++    E    +A K+   M+ K+ +
Sbjct: 227 SCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMI-KRSI 285

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
           D                                  PD+ T N++INGFC   R+++A ++
Sbjct: 286 D----------------------------------PDIFTYNSLINGFCMHDRLDKAKQM 311

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
              MV+ K C PD  T+ T+I G     R+++   L ++ M  RG     VTY  +++GL
Sbjct: 312 FEFMVS-KDCFPDLDTYNTLIKGFCKSKRVEDGTEL-FREMSHRGLVGDTVTYTTLIQGL 369

Query: 362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
           F     + A++VF  M+  GV  D  TY+I++DGLC + +L++A   +D +       D 
Sbjct: 370 FHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDI 429

Query: 422 YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
           Y+Y  MI+G+C++GK+ +       L   GV PN+V YN +I G C   + +EAY +L++
Sbjct: 430 YIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKK 489

Query: 482 MRKNGLNPDAVTWRILDKLHGNRGN 506
           M+++G  PD+ T+  L + H   G+
Sbjct: 490 MKEDGPLPDSGTYNTLIRAHLRDGD 514



 Score =  201 bits (511), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 145/504 (28%), Positives = 242/504 (48%), Gaps = 49/504 (9%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C   R+ +A  L   M   G+ P+ +++TTLIHG     +   A  + D M   G  PN 
Sbjct: 90  CHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNL 149

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           +TY V+V G+ +  D++ A  L+ K+ E  K E D+ +    F  ++DSLC+  +V++  
Sbjct: 150 VTYGVVVNGLCKRGDIDLAFNLLNKM-EAAKIEADVVI----FNTIIDSLCKYRHVDDAL 204

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
            + ++M              +I  LC  GR   AS+++  M ++ + P+LV++N+++   
Sbjct: 205 NLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAF 264

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
            K G  + A +L ++ I+    P   TY  L+ G C    L+KA+++ +FM+SK      
Sbjct: 265 VKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSK------ 318

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
                                         C PD+ T NT+I GFCK  R+E+  ++  +
Sbjct: 319 -----------------------------DCFPDLDTYNTLIKGFCKSKRVEDGTELFRE 349

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
           M + +    D VT+TT+I GL + G    A  +  Q M   G  P I+TY+ +L GL   
Sbjct: 350 M-SHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQ-MVSDGVPPDIMTYSILLDGLCNN 407

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS--NIHDNY 422
            ++E+A EVF+ M    +  D   Y  +I+G+C++ ++D+    WD     S   +  N 
Sbjct: 408 GKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDG---WDLFCSLSLKGVKPNV 464

Query: 423 V-YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
           V Y  MI GLC    + EA   L ++ + G  P+   YN +I    +   K  + +++RE
Sbjct: 465 VTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIRE 524

Query: 482 MRKNGLNPDAVTWRIL-DKLHGNR 504
           MR      DA T  ++ + LH  R
Sbjct: 525 MRSCRFVGDASTIGLVANMLHDGR 548



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 108/407 (26%), Positives = 185/407 (45%), Gaps = 10/407 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC    +  A  L   M++     +VV + T+I   C+   +D A  +F EM   G+ PN
Sbjct: 159 LCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPN 218

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TYS L+  +        A+ L+  + E+      ++ N   F  L+D+  +EG   E 
Sbjct: 219 VVTYSSLISCLCSYGRWSDASQLLSDMIEK-----KINPNLVTFNALIDAFVKEGKFVEA 273

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            ++ +DM +     + F    +I+  C   R   A ++   M  +   P L +YN+++ G
Sbjct: 274 EKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKG 333

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK        +L  E    G +    TY  L++GL  + D + A+KV + M+S      
Sbjct: 334 FCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPD 393

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               +I L  LC      + L V  +M +++ + D+    T+I G CK G++++   +  
Sbjct: 394 IMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFC 453

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            + + K   P+ VT+ T+I GL +   +QEA  LL + M + G  P   TYN ++R   R
Sbjct: 454 SL-SLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKK-MKEDGPLPDSGTYNTLIRAHLR 511

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD 410
                 + E+   M     V D++T  +V + L    +LD  K F D
Sbjct: 512 DGDKAASAELIREMRSCRFVGDASTIGLVANML-HDGRLD--KSFLD 555



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 44/79 (55%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ +C   +V +   LF  +  +G  PNVV+Y T+I G C    +  AY +  +M+  G 
Sbjct: 436 IEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGP 495

Query: 61  LPNSLTYSVLVRGVLRTRD 79
           LP+S TY+ L+R  LR  D
Sbjct: 496 LPDSGTYNTLIRAHLRDGD 514



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 65/118 (55%), Gaps = 5/118 (4%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   ++ +A ++F  M+      ++  YTT+I G C+ G++D  + +F  +   GV
Sbjct: 401 LDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGV 460

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREG 118
            PN +TY+ ++ G+   R ++ A    + L ++MKE+  L  ++  +  L+ +  R+G
Sbjct: 461 KPNVVTYNTMISGLCSKRLLQEA----YALLKKMKEDGPLP-DSGTYNTLIRAHLRDG 513


>gi|15218325|ref|NP_172461.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122215618|sp|Q3EDF8.1|PPR28_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09900
 gi|332190391|gb|AEE28512.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 598

 Score =  227 bits (578), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 137/499 (27%), Positives = 258/499 (51%), Gaps = 12/499 (2%)

Query: 3   QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           Q+     + E  K   +M   G+VP+++  TTLI G+CR G+   A K+ + +   G +P
Sbjct: 111 QMVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVP 170

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           + +TY+V++ G  +  ++  A      + +RM    D+      +  ++ SLC  G + +
Sbjct: 171 DVITYNVMISGYCKAGEINNA----LSVLDRMSVSPDV----VTYNTILRSLCDSGKLKQ 222

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCR-SGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
              + + M Q     +      +I++ CR SG  H A +++  MR RG TP +V+YN +V
Sbjct: 223 AMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGH-AMKLLDEMRDRGCTPDVVTYNVLV 281

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
           +G+CK G    A + L +    G  P+  T+ +++  +C       A K+L  ML K   
Sbjct: 282 NGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFS 341

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
                 NI +  LC        +++L  M Q  CQP+ ++ N +++GFCK  +++ A++ 
Sbjct: 342 PSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEY 401

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
           L  MV+ + C PD VT+ T++  L   G++++A+ +L Q +  +G SP ++TYN V+ GL
Sbjct: 402 LERMVS-RGCYPDIVTYNTMLTALCKDGKVEDAVEILNQ-LSSKGCSPVLITYNTVIDGL 459

Query: 362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
            +  +  +A ++ + M    +  D+ TY+ ++ GL    ++DEA +F+ +        + 
Sbjct: 460 AKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNA 519

Query: 422 YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
             + +++ GLC+S +   A+ FL  +++ G  PN   Y ++I+G     M +EA ++L E
Sbjct: 520 VTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALELLNE 579

Query: 482 MRKNGLNPDAVTWRILDKL 500
           +   GL   +   ++  K+
Sbjct: 580 LCNKGLMKKSSAEQVAGKM 598



 Score =  204 bits (519), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 119/401 (29%), Positives = 201/401 (50%), Gaps = 12/401 (2%)

Query: 104 NAAFA-------NLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNH 156
           N++FA       N +  + R G + E F+  E+M    +V +   C  +I   CR G+  
Sbjct: 95  NSSFALEDVESNNHLRQMVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTR 154

Query: 157 GASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLV 216
            A++++ ++   G  P +++YN ++ G CK G    A  +L+   +    P   TY  ++
Sbjct: 155 KAAKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSVLD---RMSVSPDVVTYNTIL 211

Query: 217 EGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQ 276
             LC    L++A +VL  ML +          I + A C        + +L  M    C 
Sbjct: 212 RSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCT 271

Query: 277 PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALN 336
           PDV+T N ++NG CK GR++EA+K LNDM +   C P+ +T   I+  + + GR  +A  
Sbjct: 272 PDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSG-CQPNVITHNIILRSMCSTGRWMDAEK 330

Query: 337 LLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 396
           LL  ++ ++G+SP +VT+N ++  L R   +  A ++   M   G   +S +Y  ++ G 
Sbjct: 331 LLADML-RKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGF 389

Query: 397 CESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNI 456
           C+  ++D A  + + +V      D   Y  M+  LC+ GK+ +AV  L +L   G +P +
Sbjct: 390 CKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVL 449

Query: 457 VCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           + YN VIDG  K     +A ++L EMR   L PD +T+  L
Sbjct: 450 ITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSL 490



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 102/392 (26%), Positives = 174/392 (44%), Gaps = 42/392 (10%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C  S VG A KL  +M+ RG  P+VV+Y  L++G C+ G +D A K  ++M   G 
Sbjct: 246 IEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGC 305

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +T+++++R +  T     A  L+  +  +       S +   F  L++ LCR+G +
Sbjct: 306 QPNVITHNIILRSMCSTGRWMDAEKLLADMLRK-----GFSPSVVTFNILINFLCRKGLL 360

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                I E MPQ                                    G  P+ +SYN +
Sbjct: 361 GRAIDILEKMPQ-----------------------------------HGCQPNSLSYNPL 385

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +HG CK     RA + LE  +  G  P   TY  ++  LC +  +E A ++L  + SK  
Sbjct: 386 LHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGC 445

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                  N  +  L       + + +L  M     +PD IT ++++ G  + G+++EA+K
Sbjct: 446 SPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIK 505

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
             ++        P+AVTF +I+ GL    +   A++ L   M  RG  P   +Y  ++ G
Sbjct: 506 FFHEFERMGI-RPNAVTFNSIMLGLCKSRQTDRAIDFLV-FMINRGCKPNETSYTILIEG 563

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIV 392
           L      +EA E+ N +   G++  S+   + 
Sbjct: 564 LAYEGMAKEALELLNELCNKGLMKKSSAEQVA 595


>gi|224071479|ref|XP_002303480.1| predicted protein [Populus trichocarpa]
 gi|222840912|gb|EEE78459.1| predicted protein [Populus trichocarpa]
          Length = 836

 Score =  226 bits (577), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 146/500 (29%), Positives = 249/500 (49%), Gaps = 13/500 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C   R  +A  LF  M+  G  PNVV+Y  +IHG C++G +D AY+  ++M    V
Sbjct: 263 INAFCKGHREDDAIGLFSKMEKLGVAPNVVTYNNIIHGLCKSGRLDEAYRFKEKMVKEKV 322

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSV--NNAAFANLVDSLCREG 118
            P+ +TYSV + G+++   ++ AN ++       KE  +L    N   +  L+D  C+ G
Sbjct: 323 SPSLITYSVFINGLIKLEKIDEANCVL-------KEMSELGFVPNEVVYNTLIDGYCKMG 375

Query: 119 YVNEVFRIAEDM-PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
            ++E  +I +DM  +G S N       +I   C+S +   A  V+  M  RGL  +  S+
Sbjct: 376 NISEALKIRDDMLSKGISPNS-VTLNSLIQGFCKSDQIGQAENVLEEMIGRGLPINQGSF 434

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
           + +++ LC     + A   + E +     P++     LV GLC      +A ++   +L 
Sbjct: 435 SMVINWLCLKFRFVTALHFIREMLLRNLRPNDGLLTTLVSGLCKAGKQGEAVELWCRLLG 494

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
           K  V      N  +  LC   N  E L +L  ML+     D IT NT+I+G CK G+++E
Sbjct: 495 KGFVPNIVTSNALIHGLCKAGNMQETLKLLRDMLERGLVFDRITYNTLISGCCKEGKVKE 554

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
             ++  +MV  K   PD  TF  ++ GL N  +I EA  L ++   + GY P + TY  +
Sbjct: 555 GFELKEEMVK-KGIQPDIYTFNLLLHGLCNADKIDEASRLWHEC-KKNGYVPNVYTYGVM 612

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 417
           + G  +  +VEE + + N ++   +  +S  Y  +I   C +  ++ A R  DD+     
Sbjct: 613 IDGYCKANKVEEGENLLNELVSKKLELNSVVYNSLIRAYCINGNMNAAFRLRDDMKSRGV 672

Query: 418 IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQ 477
           +     Y++++ GLC  G + +A H L E+   G+ PN+VCY  +I G  KL    +   
Sbjct: 673 LLSCATYSSLMHGLCNIGLVDDAKHLLDEMRKEGLLPNVVCYTTIIGGYSKLGQMNKVNI 732

Query: 478 ILREMRKNGLNPDAVTWRIL 497
           +L+EM  + ++P+  T+ I+
Sbjct: 733 VLQEMSSHNIHPNKFTYTIM 752



 Score =  188 bits (478), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 128/492 (26%), Positives = 241/492 (48%), Gaps = 9/492 (1%)

Query: 11  GEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVL 70
           G A  +F  +  +G  P++ + T L+    +  E+  +Y+V+D +   G++P+   +S +
Sbjct: 203 GFAADVFSLLAKKGLFPSLKTCTFLLSSLVKANELKKSYEVYDFICLGGIIPDVHLFSTM 262

Query: 71  VRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDM 130
           +    +    + A      L+ +M E+  ++ N   + N++  LC+ G ++E +R  E M
Sbjct: 263 INAFCKGHREDDA----IGLFSKM-EKLGVAPNVVTYNNIIHGLCKSGRLDEAYRFKEKM 317

Query: 131 PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGC 190
            + K           I+ L +  +   A+ V+  M + G  P+ V YN+++ G CK G  
Sbjct: 318 VKEKVSPSLITYSVFINGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGYCKMGNI 377

Query: 191 MRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIY 250
             A ++ ++ +  G  P+  T   L++G C    + +A  VL+ M+ +         ++ 
Sbjct: 378 SEALKIRDDMLSKGISPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGRGLPINQGSFSMV 437

Query: 251 LRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKF 310
           +  LCL       L+ +  ML    +P+   L T+++G CK G+  EA+++   ++ GK 
Sbjct: 438 INWLCLKFRFVTALHFIREMLLRNLRPNDGLLTTLVSGLCKAGKQGEAVELWCRLL-GKG 496

Query: 311 CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEA 370
             P+ VT   +I GL   G +QE L LL  ++ +RG     +TYN ++ G  +  +V+E 
Sbjct: 497 FVPNIVTSNALIHGLCKAGNMQETLKLLRDML-ERGLVFDRITYNTLISGCCKEGKVKEG 555

Query: 371 KEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKG 430
            E+   M+  G+  D  T+ +++ GLC ++++DEA R W +      + + Y Y  MI G
Sbjct: 556 FELKEEMVKKGIQPDIYTFNLLLHGLCNADKIDEASRLWHECKKNGYVPNVYTYGVMIDG 615

Query: 431 LCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD 490
            C++ K+ E  + L ELV   +  N V YN +I   C       A+++  +M+  G+   
Sbjct: 616 YCKANKVEEGENLLNELVSKKLELNSVVYNSLIRAYCINGNMNAAFRLRDDMKSRGVLLS 675

Query: 491 AVTWRILDKLHG 502
             T+  L  +HG
Sbjct: 676 CATYSSL--MHG 685



 Score =  188 bits (477), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 126/500 (25%), Positives = 237/500 (47%), Gaps = 42/500 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ L  L ++ EA+ +  +M   G VPN V Y TLI GYC+ G +  A K+ D+M   G+
Sbjct: 333 INGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGYCKMGNISEALKIRDDMLSKGI 392

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLC-REGY 119
            PNS+T + L++G  ++  + +A  ++ ++  R      L +N  +F+ +++ LC +  +
Sbjct: 393 SPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGR-----GLPINQGSFSMVINWLCLKFRF 447

Query: 120 VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           V  +  I E + +    N+      ++  LC++G+   A  +   +  +G  P++V+ N+
Sbjct: 448 VTALHFIREMLLRNLRPNDGLLTT-LVSGLCKAGKQGEAVELWCRLLGKGFVPNIVTSNA 506

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++HGLCK G      +LL + ++ G +    TY  L+ G C E  +++  ++ + M+ K 
Sbjct: 507 LIHGLCKAGNMQETLKLLRDMLERGLVFDRITYNTLISGCCKEGKVKEGFELKEEMVKKG 566

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                   N+ L  LC      E   +     +    P+V T   +I+G+CK  ++EE  
Sbjct: 567 IQPDIYTFNLLLHGLCNADKIDEASRLWHECKKNGYVPNVYTYGVMIDGYCKANKVEEGE 626

Query: 300 KVLNDMVAGK--------------FCAP--------------------DAVTFTTIIFGL 325
            +LN++V+ K              +C                         T+++++ GL
Sbjct: 627 NLLNELVSKKLELNSVVYNSLIRAYCINGNMNAAFRLRDDMKSRGVLLSCATYSSLMHGL 686

Query: 326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 385
            N+G + +A +LL + M + G  P +V Y  ++ G  +L ++ +   V   M    +  +
Sbjct: 687 CNIGLVDDAKHLLDE-MRKEGLLPNVVCYTTIIGGYSKLGQMNKVNIVLQEMSSHNIHPN 745

Query: 386 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY 445
             TY I+IDG C+  +  EA +  +++     + D   Y A   GLC+ GK+ EA     
Sbjct: 746 KFTYTIMIDGFCKLGKTKEAAKLLNEMTEKGILPDAVTYNAFTNGLCKEGKVEEAFKVCD 805

Query: 446 ELVDSGVTPNIVCYNVVIDG 465
           E+    V  + + Y  +IDG
Sbjct: 806 EMSSGAVCLDEITYTTLIDG 825



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 123/439 (28%), Positives = 207/439 (47%), Gaps = 38/439 (8%)

Query: 110 LVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRG 169
           L+ SL +   + + + + + +  G  + +      MI++ C+  R   A  +   M K G
Sbjct: 227 LLSSLVKANELKKSYEVYDFICLGGIIPDVHLFSTMINAFCKGHREDDAIGLFSKMEKLG 286

Query: 170 LTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKAR 229
           + P++V+YN+I+HGLCK G    AY+  E+ ++    PS  TY V + GL     +++A 
Sbjct: 287 VAPNVVTYNNIIHGLCKSGRLDEAYRFKEKMVKEKVSPSLITYSVFINGLIKLEKIDEAN 346

Query: 230 KVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGF 289
            VL+ M     V    + N  +   C + N +E L +   ML     P+ +TLN++I GF
Sbjct: 347 CVLKEMSELGFVPNEVVYNTLIDGYCKMGNISEALKIRDDMLSKGISPNSVTLNSLIQGF 406

Query: 290 CKMGRIEEALKVLNDMVA-------GKFCA---------------------------PDA 315
           CK  +I +A  VL +M+        G F                             P+ 
Sbjct: 407 CKSDQIGQAENVLEEMIGRGLPINQGSFSMVINWLCLKFRFVTALHFIREMLLRNLRPND 466

Query: 316 VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN 375
              TT++ GL   G+  EA+ L  +++  +G+ P IVT NA++ GL +   ++E  ++  
Sbjct: 467 GLLTTLVSGLCKAGKQGEAVELWCRLL-GKGFVPNIVTSNALIHGLCKAGNMQETLKLLR 525

Query: 376 CMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG 435
            ML  G+V D  TY  +I G C+  ++ E     +++V      D Y +  ++ GLC + 
Sbjct: 526 DMLERGLVFDRITYNTLISGCCKEGKVKEGFELKEEMVKKGIQPDIYTFNLLLHGLCNAD 585

Query: 436 KIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWR 495
           KI EA    +E   +G  PN+  Y V+IDG CK +   E   +L E+    L  ++V + 
Sbjct: 586 KIDEASRLWHECKKNGYVPNVYTYGVMIDGYCKANKVEEGENLLNELVSKKLELNSVVYN 645

Query: 496 ILDK---LHGNRGNDFGLR 511
            L +   ++GN    F LR
Sbjct: 646 SLIRAYCINGNMNAAFRLR 664


>gi|302775582|ref|XP_002971208.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
 gi|300161190|gb|EFJ27806.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
          Length = 599

 Score =  226 bits (575), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 134/478 (28%), Positives = 232/478 (48%), Gaps = 7/478 (1%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M  R   P+  SY  LI G  + G+++ A  +F ++ H GV P+++ Y+ L+ G+     
Sbjct: 1   MNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANS 60

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
            + A  L   +  R      ++ N      ++D+ C+ G + E   + + M +   V + 
Sbjct: 61  FDDARELFADMNRRGCPPSPVTYNV-----MIDASCKRGMLEEACDLIKKMIEDGHVPDV 115

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
                ++D LC+S R   A  +   M + G TP+  S+N+I+ GLC+     +A Q+  E
Sbjct: 116 VTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHE 175

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
                  P   +Y +L++GL     L +A K+ Q ML           N+ +  +CL   
Sbjct: 176 MEAKDIPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYT 235

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
             E L +   M    C+P   T N +I+  CK G+++EA ++L  M       PD VT++
Sbjct: 236 LDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGH-VPDVVTYS 294

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
           T+I GL ++ R+ +A +LL + M +R   P +VT N ++ GL +  R++EA+EV + M+ 
Sbjct: 295 TLISGLCSIARVDDARHLL-EDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVS 353

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
            G   D  TY  ++ G C + Q + A+    D+V      +   Y A++ GLC++ ++ E
Sbjct: 354 SGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPE 413

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           A     ++  SG  PN+  Y  +I G C         ++  EM   G++PD V +  L
Sbjct: 414 ACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTL 471



 Score =  224 bits (572), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 142/488 (29%), Positives = 249/488 (51%), Gaps = 9/488 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC  +   +A +LF DM  RG  P+ V+Y  +I   C+ G ++ A  +  +M   G +P+
Sbjct: 55  LCMANSFDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPD 114

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY+ ++ G+ ++  VE A +L+F   ER+      + N  +   ++  LC++  +++ 
Sbjct: 115 VVTYNTVMDGLCKSSRVEEA-LLLFNEMERL----GCTPNRRSHNTIILGLCQQSKIDQA 169

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            ++  +M       + ++ G +ID L ++G+ + A ++   M   G+TPS V+YN ++HG
Sbjct: 170 CQVFHEMEAKDIPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHG 229

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           +C       A +L +     G  PS  T+ +L++  C    L++A ++L+ M     V  
Sbjct: 230 MCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPD 289

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               +  +  LC I    +  ++L  M++ QC+P V+T NT+I+G CK GRI+EA +VL+
Sbjct: 290 VVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLD 349

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            MV+    +PD VT+ T++ G    G+ + A  LL   M  RG +P +VTY A++ GL +
Sbjct: 350 AMVSSGQ-SPDVVTYNTLVHGHCRAGQTERARELLSD-MVARGLAPNVVTYTALVSGLCK 407

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
             R+ EA  VF  M   G   +  TY  +I G C + Q+D   + + ++V      D+ V
Sbjct: 408 ANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVV 467

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDS--GVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
           Y  +   LC+SG+   A+  L E  +S          Y   +DG  +      A   +R+
Sbjct: 468 YGTLAAELCKSGRSARALEILREGRESLRSEAWGDEVYRFAVDGLLEAGKMEMALGFVRD 527

Query: 482 MRKNGLNP 489
           M + G  P
Sbjct: 528 MVRGGQLP 535



 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 114/366 (31%), Positives = 189/366 (51%), Gaps = 4/366 (1%)

Query: 138 EEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLL 197
           + ++ G +ID L ++G+ + A  +   +   G+TPS V+Y S++HGLC       A +L 
Sbjct: 9   DSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELF 68

Query: 198 EEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLI 257
            +  + G  PS  TY V+++  C    LE+A  +++ M+    V      N  +  LC  
Sbjct: 69  ADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKS 128

Query: 258 KNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVT 317
               E L +   M +  C P+  + NT+I G C+  +I++A +V ++M A K   PD+ +
Sbjct: 129 SRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEA-KDIPPDSWS 187

Query: 318 FTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCM 377
           +  +I GL   G++ EA  L +Q M   G +P  VTYN V+ G+     ++EA E+F  M
Sbjct: 188 YGILIDGLAKAGKLNEAYKL-FQRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSM 246

Query: 378 LGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKI 437
              G      T+ I+ID  C+  +LDEA R    +    ++ D   Y+ +I GLC   ++
Sbjct: 247 RSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARV 306

Query: 438 HEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            +A H L ++V     P +V  N +I G CK    +EA ++L  M  +G +PD VT+  L
Sbjct: 307 DDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTL 366

Query: 498 DKLHGN 503
             +HG+
Sbjct: 367 --VHGH 370



 Score =  178 bits (451), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 127/452 (28%), Positives = 214/452 (47%), Gaps = 11/452 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           MD LC  SRV EA  LF +M+  G  PN  S+ T+I G C+  ++D A +VF EM    +
Sbjct: 122 MDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKDI 181

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+S +Y +L+ G+ +   +  A    +KL++RM  +  ++ +   +  ++  +C    +
Sbjct: 182 PPDSWSYGILIDGLAKAGKLNEA----YKLFQRML-DSGITPSAVTYNVVIHGMCLAYTL 236

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E   + + M         F    +ID+ C+ G+   A R++  M   G  P +V+Y+++
Sbjct: 237 DEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTL 296

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GLC       A  LLE+ ++    P+  T   L+ GLC    +++AR+VL  M+S   
Sbjct: 297 ISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQ 356

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                  N  +   C          +L  M+     P+V+T   +++G CK  R+ EA  
Sbjct: 357 SPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACG 416

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           V   M +   CAP+  T+T +I G  + G++   L L  + M   G SP  V Y  +   
Sbjct: 417 VFAQMKSSG-CAPNLFTYTALILGFCSAGQVDGGLKLFGE-MVCAGISPDHVVYGTLAAE 474

Query: 361 LFRLRRVEEAKEVF---NCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 417
           L +  R   A E+       L      D   Y   +DGL E+ +++ A  F  D+V    
Sbjct: 475 LCKSGRSARALEILREGRESLRSEAWGDE-VYRFAVDGLLEAGKMEMALGFVRDMVRGGQ 533

Query: 418 IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449
           +      A+++ GLC+SG+  EA   L E++D
Sbjct: 534 LPAPERCASLVAGLCKSGQGGEARAVLEEIMD 565



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 77/242 (31%), Positives = 131/242 (54%), Gaps = 2/242 (0%)

Query: 265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 324
           N+   +L +   P  +   ++I+G C     ++A ++  DM   + C P  VT+  +I  
Sbjct: 31  NLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMNR-RGCPPSPVTYNVMIDA 89

Query: 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 384
               G ++EA +L+ + M + G+ P +VTYN V+ GL +  RVEEA  +FN M  +G   
Sbjct: 90  SCKRGMLEEACDLIKK-MIEDGHVPDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTP 148

Query: 385 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFL 444
           +  ++  +I GLC+ +++D+A + + ++       D++ Y  +I GL ++GK++EA    
Sbjct: 149 NRRSHNTIILGLCQQSKIDQACQVFHEMEAKDIPPDSWSYGILIDGLAKAGKLNEAYKLF 208

Query: 445 YELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNR 504
             ++DSG+TP+ V YNVVI G C      EA ++ + MR  G  P   T+ IL   H  R
Sbjct: 209 QRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKR 268

Query: 505 GN 506
           G 
Sbjct: 269 GK 270



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/207 (29%), Positives = 93/207 (44%), Gaps = 15/207 (7%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C   +   A +L  DM +RG  PNVV+YT L+ G C+   +  A  VF +M+  G  PN 
Sbjct: 371 CRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNL 430

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVN--- 121
            TY+ L+ G      V+       KL+  M     +S ++  +  L   LC+ G      
Sbjct: 431 FTYTALILGFCSAGQVDGG----LKLFGEMVCA-GISPDHVVYGTLAAELCKSGRSARAL 485

Query: 122 EVFRIAEDMPQGKSVNEE---FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
           E+ R   +  + ++  +E   FA    +D L  +G+   A   V  M + G  P+     
Sbjct: 486 EILREGRESLRSEAWGDEVYRFA----VDGLLEAGKMEMALGFVRDMVRGGQLPAPERCA 541

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGY 205
           S+V GLCK G    A  +LEE +   Y
Sbjct: 542 SLVAGLCKSGQGGEARAVLEEIMDLAY 568



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 49/86 (56%)

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           D++ Y  +I GL ++GK+++A +   +L+ SGVTP+ V Y  +I G C  +   +A ++ 
Sbjct: 9   DSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELF 68

Query: 480 REMRKNGLNPDAVTWRILDKLHGNRG 505
            +M + G  P  VT+ ++      RG
Sbjct: 69  ADMNRRGCPPSPVTYNVMIDASCKRG 94


>gi|302756343|ref|XP_002961595.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
 gi|300170254|gb|EFJ36855.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
          Length = 603

 Score =  226 bits (575), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 134/478 (28%), Positives = 233/478 (48%), Gaps = 7/478 (1%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M  R   P+  SY  LI G  + G+++ A  +F ++ H GV P+++ Y+ L+ G+     
Sbjct: 1   MNERNVSPDSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANS 60

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
            + A  L   +  R      ++ N      ++D+ C+ G + E   + + M +   V + 
Sbjct: 61  FDDARELFADMNRRGCPPSPVTYNV-----IIDASCKRGMLEEACDLIKKMIEDGHVPDV 115

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
                ++D LC+SGR   A  +   M + G TP+  S+N+I+ GLC+     +A Q+  E
Sbjct: 116 VTYNTVMDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHE 175

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
                  P   +Y +L++GL     L +A K+ + ML           N+ +  +CL   
Sbjct: 176 MEARDIPPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYT 235

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
             E L +   M    C+P   T N +I+  CK G+++EA ++L  M       PD VT++
Sbjct: 236 LDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGH-VPDVVTYS 294

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
           T+I GL ++ R+ +A +LL + M +R   P +VT N ++ GL +  R++EA+EV + M+ 
Sbjct: 295 TLISGLCSIARVDDARHLL-EDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVS 353

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
            G   D  TY  ++ G C + Q + A+    D+V      +   Y A++ GLC++ ++ E
Sbjct: 354 SGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPE 413

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           A     ++  SG  PN+  Y  +I G C         ++  EM   G++PD V +  L
Sbjct: 414 ACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTL 471



 Score =  222 bits (565), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 141/488 (28%), Positives = 248/488 (50%), Gaps = 9/488 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC  +   +A +LF DM  RG  P+ V+Y  +I   C+ G ++ A  +  +M   G +P+
Sbjct: 55  LCMANSFDDARELFADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPD 114

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY+ ++ G+ ++  VE A +L+F   ER+      + N  +   ++  LC++  +++ 
Sbjct: 115 VVTYNTVMDGLCKSGRVEEA-LLLFNEMERL----GCTPNRRSHNTIILGLCQQSKIDQA 169

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            ++  +M       + ++ G +ID L ++G+ + A ++   M   G+TPS V+YN ++HG
Sbjct: 170 CQVFHEMEARDIPPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHG 229

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           +C       A +L +     G  PS  T+ +L++  C    +++A ++L+ M     V  
Sbjct: 230 MCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPD 289

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               +  +  LC I    +  ++L  M++ QC+P V+T NT+I+G CK GRI+EA +VL+
Sbjct: 290 VVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLD 349

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            MV+    +PD VT+ T++ G    G+ + A  LL   M  RG +P +VTY A++ GL +
Sbjct: 350 AMVSSGQ-SPDVVTYNTLVHGHCRAGQTERARELLSD-MVARGLAPNVVTYTALVSGLCK 407

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
             R+ EA  VF  M   G   +  TY  +I G C + Q+D   + + ++V      D+ V
Sbjct: 408 ANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVV 467

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDS--GVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
           Y  +   LC+SG+   A+  L E  +S          Y   +DG         A   +R+
Sbjct: 468 YGTLAAELCKSGRSARALEILREGRESLRSEAWGDEVYRFAVDGLLDAGKMEMALGFVRD 527

Query: 482 MRKNGLNP 489
           M + G  P
Sbjct: 528 MVRGGQLP 535



 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 111/366 (30%), Positives = 189/366 (51%), Gaps = 4/366 (1%)

Query: 138 EEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLL 197
           + ++ G +ID L ++G+ + A  +   +   G+TPS V+Y S++HGLC       A +L 
Sbjct: 9   DSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELF 68

Query: 198 EEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLI 257
            +  + G  PS  TY V+++  C    LE+A  +++ M+    V      N  +  LC  
Sbjct: 69  ADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKS 128

Query: 258 KNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVT 317
               E L +   M +  C P+  + NT+I G C+  +I++A +V ++M A +   PD+ +
Sbjct: 129 GRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEA-RDIPPDSWS 187

Query: 318 FTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCM 377
           +  +I GL   G++ EA  L ++ M   G +P  VTYN V+ G+     ++EA E+F  M
Sbjct: 188 YGILIDGLAKAGKLNEAYKL-FRRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSM 246

Query: 378 LGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKI 437
              G      T+ I+ID  C+  ++DEA R    +    ++ D   Y+ +I GLC   ++
Sbjct: 247 RSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARV 306

Query: 438 HEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            +A H L ++V     P +V  N +I G CK    +EA ++L  M  +G +PD VT+  L
Sbjct: 307 DDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTL 366

Query: 498 DKLHGN 503
             +HG+
Sbjct: 367 --VHGH 370



 Score =  174 bits (442), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 125/452 (27%), Positives = 212/452 (46%), Gaps = 11/452 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           MD LC   RV EA  LF +M+  G  PN  S+ T+I G C+  ++D A +VF EM    +
Sbjct: 122 MDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARDI 181

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+S +Y +L+ G+ +   +  A    +KL+ RM  +  ++ +   +  ++  +C    +
Sbjct: 182 PPDSWSYGILIDGLAKAGKLNEA----YKLFRRML-DSGITPSAVTYNVVIHGMCLAYTL 236

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E   + + M         F    +ID+ C+ G+   A R++  M   G  P +V+Y+++
Sbjct: 237 DEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTL 296

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GLC       A  LLE+ ++    P+  T   L+ GLC    +++AR+VL  M+S   
Sbjct: 297 ISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQ 356

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                  N  +   C          +L  M+     P+V+T   +++G CK  R+ EA  
Sbjct: 357 SPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACG 416

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           V   M +   CAP+  T+T +I G  + G++   L L  + M   G SP  V Y  +   
Sbjct: 417 VFAQMKSSG-CAPNLFTYTALILGFCSAGQVDGGLKLFGE-MVCAGISPDHVVYGTLAAE 474

Query: 361 LFRLRRVEEAKEVF---NCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 417
           L +  R   A E+       L      D   Y   +DGL ++ +++ A  F  D+V    
Sbjct: 475 LCKSGRSARALEILREGRESLRSEAWGDE-VYRFAVDGLLDAGKMEMALGFVRDMVRGGQ 533

Query: 418 IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449
           +      A+++ GLC+SG+  EA   L E++D
Sbjct: 534 LPAPERCASLVAGLCKSGQGGEARAVLEEIMD 565



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 86/300 (28%), Positives = 143/300 (47%), Gaps = 37/300 (12%)

Query: 207 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 266
           P   +Y +L++GL     L  AR + Q +L                              
Sbjct: 8   PDSWSYGILIDGLAKAGKLNDARDLFQKLL------------------------------ 37

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
                 +   P  +   ++I+G C     ++A ++  DM   + C P  VT+  II    
Sbjct: 38  -----HSGVTPSTVAYTSLIHGLCMANSFDDARELFADMNR-RGCPPSPVTYNVIIDASC 91

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
             G ++EA +L+ + M + G+ P +VTYN V+ GL +  RVEEA  +FN M  +G   + 
Sbjct: 92  KRGMLEEACDLIKK-MIEDGHVPDVVTYNTVMDGLCKSGRVEEALLLFNEMERLGCTPNR 150

Query: 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE 446
            ++  +I GLC+ +++D+A + + ++       D++ Y  +I GL ++GK++EA      
Sbjct: 151 RSHNTIILGLCQQSKIDQACQVFHEMEARDIPPDSWSYGILIDGLAKAGKLNEAYKLFRR 210

Query: 447 LVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           ++DSG+TP+ V YNVVI G C      EA ++ + MR  G  P   T+ IL   H  RG 
Sbjct: 211 MLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGK 270



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 61/207 (29%), Positives = 93/207 (44%), Gaps = 15/207 (7%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C   +   A +L  DM +RG  PNVV+YT L+ G C+   +  A  VF +M+  G  PN 
Sbjct: 371 CRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNL 430

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVN--- 121
            TY+ L+ G      V+       KL+  M     +S ++  +  L   LC+ G      
Sbjct: 431 FTYTALILGFCSAGQVDGG----LKLFGEMVCA-GISPDHVVYGTLAAELCKSGRSARAL 485

Query: 122 EVFRIAEDMPQGKSVNEE---FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
           E+ R   +  + ++  +E   FA    +D L  +G+   A   V  M + G  P+     
Sbjct: 486 EILREGRESLRSEAWGDEVYRFA----VDGLLDAGKMEMALGFVRDMVRGGQLPAPERCA 541

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGY 205
           S+V GLCK G    A  +LEE +   Y
Sbjct: 542 SLVAGLCKSGQGGEARAVLEEIMDLAY 568


>gi|302759535|ref|XP_002963190.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
 gi|300168458|gb|EFJ35061.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
          Length = 573

 Score =  224 bits (572), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 130/474 (27%), Positives = 248/474 (52%), Gaps = 10/474 (2%)

Query: 27  PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVL 86
           P VV++T +I G+C+  ++  A   F++MR   V PN  TY+V+V G+ + R   +A   
Sbjct: 5   PTVVTWTIIIDGFCKANQLKQALACFEKMRE-FVAPNERTYNVVVNGLCKARLTSKA--- 60

Query: 87  MFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFAC-GHM 145
            +++ + M++ + ++ +   ++ +++  C++G ++    I  +M     +  +      +
Sbjct: 61  -YEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTSV 119

Query: 146 IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGI-QFG 204
           +D LCR G+   A  +V  M+ +G+ P   ++++++ G C       A +L +E +    
Sbjct: 120 VDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSS 179

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL 264
           + P   TY  L++G C   +LEKA K+L  M  +K V      +  L  LC   +  + L
Sbjct: 180 WKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQAL 239

Query: 265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 324
           ++   M    C P+V+T  T+I+G C   +++ A  ++++M A   C PD V++  ++ G
Sbjct: 240 DLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTA-TCCPPDTVSYNALLDG 298

Query: 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVF-NCMLGIGVV 383
              +GRI+EA   L++ M  +   P  +TY  ++RG     R+EEA+ +  N     G+ 
Sbjct: 299 YCRLGRIEEA-KQLFKEMATKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGID 357

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
            D  TY+IV+ G   + +  EA  F  +++  +   +   Y+++I GLC++G++  A+  
Sbjct: 358 PDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVDHAMEV 417

Query: 444 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           L  +V+  V P++  +N VI   C+L    EA+++L  M  +GL P  VT+  L
Sbjct: 418 LKNMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTL 471



 Score =  224 bits (571), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 136/483 (28%), Positives = 242/483 (50%), Gaps = 44/483 (9%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHV-PNVVSYTTLIHGYCRTGEMDVAYKVFDEM-RHCGVL 61
           LC      +A+++  +M+    V P++V+Y+T+I+G+C+ GEMD A ++  EM    G+ 
Sbjct: 51  LCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGIA 110

Query: 62  PNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVN 121
           P+ +TY+ +V G+ R   ++RA  ++ ++  +  E +  +     F+ L+   C    V+
Sbjct: 111 PDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFT-----FSALITGWCNARKVD 165

Query: 122 EVFRIAEDMPQGKSVNEEFAC-GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           E  ++ +++    S   +      +ID  C+SG    A +++ VM  R   P++V+Y+S+
Sbjct: 166 EALKLYKEILTSSSWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSL 225

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +HGLCK G   +A  L       G +P+  TY  L+ GLC    ++ AR ++  M +   
Sbjct: 226 LHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTA--- 282

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                           T C PD ++ N +++G+C++GRIEEA +
Sbjct: 283 --------------------------------TCCPPDTVSYNALLDGYCRLGRIEEAKQ 310

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +  +M A K C PD +T+T ++ G  N  R++EA  LL  +    G  P +VTY+ V+ G
Sbjct: 311 LFKEM-ATKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAG 369

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
             R +R  EA E    M+   V  ++ TY+ +IDGLC++ ++D A     ++V       
Sbjct: 370 YSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVDHAMEVLKNMVNKRVEPS 429

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              + ++I  LCR G + EA   L  +   G+ P +V Y  +++G  +      AY++  
Sbjct: 430 VGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYELFE 489

Query: 481 EMR 483
            MR
Sbjct: 490 VMR 492



 Score =  171 bits (433), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 122/461 (26%), Positives = 218/461 (47%), Gaps = 16/461 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDE-MRHCG 59
           +D LC   ++  A ++  +MK +G  P+  +++ LI G+C   ++D A K++ E +    
Sbjct: 120 VDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSS 179

Query: 60  VLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGY 119
             P+ +TY+ L+ G  ++ ++E+A  ++  +     E      N   +++L+  LC+ G 
Sbjct: 180 WKPDVVTYTALIDGFCKSGNLEKAMKMLGVM-----EGRKCVPNVVTYSSLLHGLCKAGD 234

Query: 120 VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           +++   +   M     V        +I  LC + +   A  ++  M      P  VSYN+
Sbjct: 235 LDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPPDTVSYNA 294

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++ G C+ G    A QL +E      LP   TY  LV G C  S LE+AR +L+ M +  
Sbjct: 295 LLDGYCRLGRIEEAKQLFKEMATKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAA 354

Query: 240 DVDRTRIC-NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
            +D   +  +I +      K   E    +  M+     P+ +T +++I+G CK GR++ A
Sbjct: 355 GIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVDHA 414

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
           ++VL +MV  K   P   TF ++I  L  +G + EA  LL   M   G  PG+VTY  +L
Sbjct: 415 MEVLKNMV-NKRVEPSVGTFNSVIGALCRLGDMDEAWKLLV-AMAAHGLEPGMVTYTTLL 472

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGV-------VADSTTYAIVIDGLCESNQLDEAKRFWDD 411
            G  R  R+E A E+F  M            +     ++ +I GLC++ ++D+A    ++
Sbjct: 473 EGFSRTGRMEIAYELFEVMRKKAKKSSSAANLVPEQAFSALIRGLCKAREIDKAMAVVEE 532

Query: 412 IVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGV 452
           +             A++ GL R+G+  EA   +  +   G+
Sbjct: 533 LRSRECEPAEEDCLAIVDGLLRAGRTEEAGKLINSISKVGL 573



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 76/227 (33%), Positives = 125/227 (55%), Gaps = 3/227 (1%)

Query: 277 PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALN 336
           P+  T N V+NG CK     +A +VL +M  GK  APD VT++T+I G    G +  A  
Sbjct: 39  PNERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACE 98

Query: 337 LLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 396
           +L +++ + G +P +VTY +V+ GL R  +++ A E+   M   GV  D  T++ +I G 
Sbjct: 99  ILREMVTRDGIAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGW 158

Query: 397 CESNQLDEAKRFWDDIVWPSNIHDNYV-YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN 455
           C + ++DEA + + +I+  S+   + V Y A+I G C+SG + +A+  L  +      PN
Sbjct: 159 CNARKVDEALKLYKEILTSSSWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPN 218

Query: 456 IVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
           +V Y+ ++ G CK     +A  + R M   G  P+ VT+  L  +HG
Sbjct: 219 VVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTL--IHG 263


>gi|449529622|ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 618

 Score =  224 bits (571), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 138/495 (27%), Positives = 250/495 (50%), Gaps = 38/495 (7%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC ++RV EA      +  RG++PNVV+YTTLI G C    +  A ++F  M+  G  PN
Sbjct: 136 LCNVNRVSEALAAMAGILRRGYIPNVVTYTTLIKGLCMEHRISEATRLFLRMQKLGCTPN 195

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           ++TY  L++G+ +T +V   N+ +    E + +     VN           C+ G +   
Sbjct: 196 AVTYGTLIKGLCQTGNV---NIALKLHKEMLNDASQYGVN-----------CKPGVI--T 239

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           + I                  +ID LC+ GR   A  +   M+ +G+ P ++SY++++HG
Sbjct: 240 YSI------------------IIDGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLIHG 281

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            C  G   ++  L +E +  G  P   T+ VL++ LC E  + +A+K+L+ M+ +  V  
Sbjct: 282 FCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPN 341

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               N  +   C++ +      + + M     +PD I+  T+ING+CK  +++EA+ + N
Sbjct: 342 LITYNSLIDGFCMVGDLNSARELFLSMPSKGLEPDEISYTTLINGYCKTWKVKEAMNLYN 401

Query: 304 DMV-AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
           +M+  GK  +P+  T+ T++ GL   G++ +A   L+ VM   G S     Y   L GL 
Sbjct: 402 EMLQVGK--SPNVTTYGTLLKGLFQKGKVGDA-KKLFGVMKTYGVSANSQIYGIFLDGLC 458

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
           +   + EA E+FN +       +   Y+ +IDGLC++ +L+ A   ++ +       D  
Sbjct: 459 KNDCLFEAMELFNELKSYNFKLNIENYSCLIDGLCKAGKLETAWELFEKLSQEGLQPDVV 518

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
            Y  MI G C+ G++  A     ++ ++G TP+I+ YN ++ G C+ +   E  ++L +M
Sbjct: 519 TYNIMIHGFCKVGQVDNANILFEKMEENGCTPDIIAYNTLLCGFCEGNKLEEVIKLLHKM 578

Query: 483 RKNGLNPDAVTWRIL 497
            +  ++P+A +  I+
Sbjct: 579 VQKDVSPNAASCTIV 593



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 117/410 (28%), Positives = 202/410 (49%), Gaps = 45/410 (10%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC + R  EA +LF +MK++G +P+V+SY+TLIHG+C  G+ D +  +FDEM   GV
Sbjct: 244 IDGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGV 303

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +T+SVL                                        +D+LC+EG V
Sbjct: 304 QPDMVTFSVL----------------------------------------IDTLCKEGKV 323

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E  ++ E M Q   V        +ID  C  G  + A  +   M  +GL P  +SY ++
Sbjct: 324 TEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLNSARELFLSMPSKGLEPDEISYTTL 383

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++G CK      A  L  E +Q G  P+  TY  L++GL  +  +  A+K+   M +   
Sbjct: 384 INGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYGTLLKGLFQKGKVGDAKKLFGVMKTYGV 443

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
              ++I  I+L  LC      E + +   +     + ++   + +I+G CK G++E A +
Sbjct: 444 SANSQIYGIFLDGLCKNDCLFEAMELFNELKSYNFKLNIENYSCLIDGLCKAGKLETAWE 503

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +  + ++ +   PD VT+  +I G   VG++  A N+L++ M + G +P I+ YN +L G
Sbjct: 504 LF-EKLSQEGLQPDVVTYNIMIHGFCKVGQVDNA-NILFEKMEENGCTPDIIAYNTLLCG 561

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD 410
                ++EE  ++ + M+   V  ++ +  IV+D LC+    ++ K+F D
Sbjct: 562 FCEGNKLEEVIKLLHKMVQKDVSPNAASCTIVVDMLCKD---EKYKKFVD 608



 Score =  157 bits (398), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 113/441 (25%), Positives = 207/441 (46%), Gaps = 49/441 (11%)

Query: 105 AAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYV 164
           ++F  L+  L +  + +++F +  +M       + F    + + LC   R   A   +  
Sbjct: 92  SSFNRLLGGLAKINHYSQLFSLYNEMRLAGLSPDLFTLSILANCLCNVNRVSEALAAMAG 151

Query: 165 MRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESD 224
           + +RG  P++V+Y +++ GLC       A +L     + G  P+  TY  L++GLC   +
Sbjct: 152 ILRRGYIPNVVTYTTLIKGLCMEHRISEATRLFLRMQKLGCTPNAVTYGTLIKGLCQTGN 211

Query: 225 LEKARKVLQFMLSKKDVDRTRI-C-------NIYLRALCLIKNPTELLNVLVFMLQTQCQ 276
           +  A K+ + ML+  D  +  + C       +I +  LC +    E   +   M      
Sbjct: 212 VNIALKLHKEMLN--DASQYGVNCKPGVITYSIIIDGLCKVGREDEAKELFEEMKAQGMI 269

Query: 277 PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALN 336
           PDVI+ +T+I+GFC  G+ +++  + ++MV  +   PD VTF+ +I  L   G++ EA  
Sbjct: 270 PDVISYSTLIHGFCCAGKWDQSKHLFDEMV-DQGVQPDMVTFSVLIDTLCKEGKVTEAKK 328

Query: 337 LLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 396
           LL +VM QRG  P ++TYN+++ G   +  +  A+E+F  M   G+  D  +Y  +I+G 
Sbjct: 329 LL-EVMIQRGIVPNLITYNSLIDGFCMVGDLNSARELFLSMPSKGLEPDEISYTTLINGY 387

Query: 397 CESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKI------------------- 437
           C++ ++ EA   +++++      +   Y  ++KGL + GK+                   
Sbjct: 388 CKTWKVKEAMNLYNEMLQVGKSPNVTTYGTLLKGLFQKGKVGDAKKLFGVMKTYGVSANS 447

Query: 438 ----------------HEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
                            EA+    EL       NI  Y+ +IDG CK      A+++  +
Sbjct: 448 QIYGIFLDGLCKNDCLFEAMELFNELKSYNFKLNIENYSCLIDGLCKAGKLETAWELFEK 507

Query: 482 MRKNGLNPDAVTWRILDKLHG 502
           + + GL PD VT+ I+  +HG
Sbjct: 508 LSQEGLQPDVVTYNIM--IHG 526



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 88/341 (25%), Positives = 167/341 (48%), Gaps = 6/341 (1%)

Query: 164 VMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGES 223
           +M +    P + S+N ++ GL K     + + L  E    G  P   T  +L   LC  +
Sbjct: 81  LMMRSHPIPPISSFNRLLGGLAKINHYSQLFSLYNEMRLAGLSPDLFTLSILANCLCNVN 140

Query: 224 DLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLN 283
            + +A   +  +L +  +         ++ LC+    +E   + + M +  C P+ +T  
Sbjct: 141 RVSEALAAMAGILRRGYIPNVVTYTTLIKGLCMEHRISEATRLFLRMQKLGCTPNAVTYG 200

Query: 284 TVINGFCKMGRIEEALKVLNDMVA-----GKFCAPDAVTFTTIIFGLLNVGRIQEALNLL 338
           T+I G C+ G +  ALK+  +M+      G  C P  +T++ II GL  VGR  EA  L 
Sbjct: 201 TLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVITYSIIIDGLCKVGREDEAKEL- 259

Query: 339 YQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE 398
           ++ M  +G  P +++Y+ ++ G     + +++K +F+ M+  GV  D  T++++ID LC+
Sbjct: 260 FEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVLIDTLCK 319

Query: 399 SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVC 458
             ++ EAK+  + ++    + +   Y ++I G C  G ++ A      +   G+ P+ + 
Sbjct: 320 EGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLNSARELFLSMPSKGLEPDEIS 379

Query: 459 YNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
           Y  +I+G CK    +EA  +  EM + G +P+  T+  L K
Sbjct: 380 YTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYGTLLK 420



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 83/307 (27%), Positives = 141/307 (45%), Gaps = 50/307 (16%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C +  +  A +LF  M S+G  P+ +SYTTLI+GYC+T ++  A  +++EM   G 
Sbjct: 349 IDGFCMVGDLNSARELFLSMPSKGLEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGK 408

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN  TY  L++G+ +   V  A     KL+  MK    +S N+  +   +D LC+   +
Sbjct: 409 SPNVTTYGTLLKGLFQKGKVGDAK----KLFGVMKTY-GVSANSQIYGIFLDGLCKNDCL 463

Query: 121 NEVFRIAEDMPQGKSVN-----EEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLV 175
            E   +  ++   KS N     E ++C  +ID LC++G+   A  +   + + GL P +V
Sbjct: 464 FEAMELFNEL---KSYNFKLNIENYSC--LIDGLCKAGKLETAWELFEKLSQEGLQPDVV 518

Query: 176 SYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM 235
           +YN ++HG CK G    A  L E+  + G  P    Y  L+ G C  + LE         
Sbjct: 519 TYNIMIHGFCKVGQVDNANILFEKMEENGCTPDIIAYNTLLCGFCEGNKLE--------- 569

Query: 236 LSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 295
                                     E++ +L  M+Q    P+  +   V++  CK  + 
Sbjct: 570 --------------------------EVIKLLHKMVQKDVSPNAASCTIVVDMLCKDEKY 603

Query: 296 EEALKVL 302
           ++ + +L
Sbjct: 604 KKFVDLL 610



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/138 (23%), Positives = 63/138 (45%)

Query: 369 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI 428
           +A   F+ M+    +   +++  ++ GL + N   +    ++++       D +  + + 
Sbjct: 74  QAFHFFDLMMRSHPIPPISSFNRLLGGLAKINHYSQLFSLYNEMRLAGLSPDLFTLSILA 133

Query: 429 KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLN 488
             LC   ++ EA+  +  ++  G  PN+V Y  +I G C      EA ++   M+K G  
Sbjct: 134 NCLCNVNRVSEALAAMAGILRRGYIPNVVTYTTLIKGLCMEHRISEATRLFLRMQKLGCT 193

Query: 489 PDAVTWRILDKLHGNRGN 506
           P+AVT+  L K     GN
Sbjct: 194 PNAVTYGTLIKGLCQTGN 211


>gi|262316881|emb|CAZ44330.1| homologue to restoring pentatricopeptide repeat protein [Raphanus
           sativus]
          Length = 686

 Score =  224 bits (571), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 138/502 (27%), Positives = 250/502 (49%), Gaps = 19/502 (3%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R+ EA  LF  M      PNVV++TTL++G CR G +  A  + D M   G+ PN
Sbjct: 161 LCVEDRISEALDLFHQMCK----PNVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPN 216

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY  +V G+ +  D   A      L  +M+E   +  N   +  ++D L ++G  ++ 
Sbjct: 217 QITYGTIVDGMCKMGDTVSA----LNLLRKMEEVSHIIPNVVIYNTIIDGLWKDGRHSDA 272

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             +  +M + +   +      MI+  C SGR   A +++  M +R + P +V+++++++ 
Sbjct: 273 HNLFIEMQEKEIFPDIVTYNCMINGFCISGRWSDAEQLLQEMLERKINPDVVTFSALINA 332

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
             K G    A +L +E +    +PS  TY  +++G C ++ L+ A  +     +K     
Sbjct: 333 FVKEGKFFEAEELYDEMLPRSIIPSTVTYSSMIDGFCKQNRLDAAEHMFYLTPTKGCSPD 392

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               N  +   C  K   + + +L  M +     + IT  T+I+GFC++G +  A  +L 
Sbjct: 393 IITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQ 452

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVM----------PQRGYSPGIVT 353
           +M++   C P+ VT  T++ GL + G++++AL +   +           P  G  P + T
Sbjct: 453 EMISSGVC-PNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASRPFNGVEPDVQT 511

Query: 354 YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413
           YN ++ GL    +  EA+E++  M   G+V D+ TY+ +IDGLC+ ++LDEA + +D + 
Sbjct: 512 YNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMG 571

Query: 414 WPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKR 473
             S   D   +  +I G C++G + + +    E+   G+  + + Y  +I G  K+    
Sbjct: 572 SKSFSPDVVTFNTLITGYCKAGMVDDGLELFCEMGQRGIVADAITYITLIYGFRKVDNID 631

Query: 474 EAYQILREMRKNGLNPDAVTWR 495
            A  I +EM  +G+ PD +T R
Sbjct: 632 GALDIFQEMISSGVYPDTITIR 653



 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 142/520 (27%), Positives = 251/520 (48%), Gaps = 27/520 (5%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M   C  S++  A   F  +   G  P VV++ TL+HG C    +  A  +F +M     
Sbjct: 123 MKCFCSCSKLPFALSTFGKITKLGFHPTVVTFNTLLHGLCVEDRISEALDLFHQM----C 178

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +T++ L+ G+ R   V  A  L+ ++      E+ L  N   +  +VD +C+ G  
Sbjct: 179 KPNVVTFTTLMNGLCREGRVVEAVALLDRML-----EDGLQPNQITYGTIVDGMCKMGDT 233

Query: 121 NEVFRIAEDMPQGKSVNEEFAC-GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
                +   M +   +         +ID L + GR+  A  +   M+++ + P +V+YN 
Sbjct: 234 VSALNLLRKMEEVSHIIPNVVIYNTIIDGLWKDGRHSDAHNLFIEMQEKEIFPDIVTYNC 293

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           +++G C  G    A QLL+E ++    P   T+  L+     E    +A ++   ML + 
Sbjct: 294 MINGFCISGRWSDAEQLLQEMLERKINPDVVTFSALINAFVKEGKFFEAEELYDEMLPRS 353

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQ-CQPDVITLNTVINGFCKMGRIEEA 298
            +  T   +  +   C  +N  +    + ++  T+ C PD+IT NT+I G+C+  R+++ 
Sbjct: 354 IIPSTVTYSSMIDGFCK-QNRLDAAEHMFYLTPTKGCSPDIITFNTLIAGYCRAKRVDDG 412

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
           +K+L++M      A + +T+TT+I G   VG +  A +LL Q M   G  P +VT N +L
Sbjct: 413 IKLLHEMTEAGLVA-NTITYTTLIHGFCQVGDLNAAQDLL-QEMISSGVCPNVVTCNTLL 470

Query: 359 RGLFRLRRVEEAKEVFNCM----LGI-------GVVADSTTYAIVIDGLCESNQLDEAKR 407
            GL    ++++A E+F  M    + I       GV  D  TY I+I GL    +  EA+ 
Sbjct: 471 DGLCDNGKLKDALEMFKAMQKSKMDIDASRPFNGVEPDVQTYNILICGLINEGKFLEAEE 530

Query: 408 FWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGAC 467
            ++++     + D   Y++MI GLC+  ++ EA      +     +P++V +N +I G C
Sbjct: 531 LYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLITGYC 590

Query: 468 KLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGND 507
           K  M  +  ++  EM + G+  DA+T+  L  ++G R  D
Sbjct: 591 KAGMVDDGLELFCEMGQRGIVADAITYITL--IYGFRKVD 628



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 121/524 (23%), Positives = 229/524 (43%), Gaps = 77/524 (14%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCG- 59
           M+ LC   RV EA  L   M   G  PN ++Y T++ G C+ G+   A  +  +M     
Sbjct: 189 MNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSH 248

Query: 60  VLPNSLTYSVLVRGVLRTRDVERANVLMFKLWER-------------------------- 93
           ++PN + Y+ ++ G+ +      A+ L  ++ E+                          
Sbjct: 249 IIPNVVIYNTIIDGLWKDGRHSDAHNLFIEMQEKEIFPDIVTYNCMINGFCISGRWSDAE 308

Query: 94  --MKE--EEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSL 149
             ++E  E  ++ +   F+ L+++  +EG   E   + ++M     +        MID  
Sbjct: 309 QLLQEMLERKINPDVVTFSALINAFVKEGKFFEAEELYDEMLPRSIIPSTVTYSSMIDGF 368

Query: 150 CRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSE 209
           C+  R   A  + Y+   +G +P ++++N+++ G C+        +LL E  + G + + 
Sbjct: 369 CKQNRLDAAEHMFYLTPTKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANT 428

Query: 210 HTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVF 269
            TY  L+ G C   DL  A+ +LQ M+S      + +C                      
Sbjct: 429 ITYTTLIHGFCQVGDLNAAQDLLQEMIS------SGVC---------------------- 460

Query: 270 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKF----------CAPDAVTFT 319
                  P+V+T NT+++G C  G++++AL++   M   K             PD  T+ 
Sbjct: 461 -------PNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASRPFNGVEPDVQTYN 513

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
            +I GL+N G+  EA   LY+ MP RG  P  +TY++++ GL +  R++EA ++F+ M  
Sbjct: 514 ILICGLINEGKFLEA-EELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGS 572

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
                D  T+  +I G C++  +D+    + ++     + D   Y  +I G  +   I  
Sbjct: 573 KSFSPDVVTFNTLITGYCKAGMVDDGLELFCEMGQRGIVADAITYITLIYGFRKVDNIDG 632

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           A+    E++ SGV P+ +    ++ G         A  +L +++
Sbjct: 633 ALDIFQEMISSGVYPDTITIRNMLTGLWSKEELERAVAMLEDLQ 676



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 90/347 (25%), Positives = 158/347 (45%), Gaps = 17/347 (4%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           EA +L+ +M  R  +P+ V+Y+++I G+C+   +D A  +F      G  P+ +T++ L+
Sbjct: 341 EAEELYDEMLPRSIIPSTVTYSSMIDGFCKQNRLDAAEHMFYLTPTKGCSPDIITFNTLI 400

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP 131
            G  R + V+       KL   M E   L  N   +  L+   C+ G +N    + ++M 
Sbjct: 401 AGYCRAKRVDDG----IKLLHEMTEA-GLVANTITYTTLIHGFCQVGDLNAAQDLLQEMI 455

Query: 132 QGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKR-----------GLTPSLVSYNSI 180
                     C  ++D LC +G+   A  +   M+K            G+ P + +YN +
Sbjct: 456 SSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASRPFNGVEPDVQTYNIL 515

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GL   G  + A +L EE    G +P   TY  +++GLC +S L++A ++   M SK  
Sbjct: 516 ICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSF 575

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                  N  +   C      + L +   M Q     D IT  T+I GF K+  I+ AL 
Sbjct: 576 SPDVVTFNTLITGYCKAGMVDDGLELFCEMGQRGIVADAITYITLIYGFRKVDNIDGALD 635

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGY 347
           +  +M++     PD +T   ++ GL +   ++ A+ +L  +    GY
Sbjct: 636 IFQEMISSGV-YPDTITIRNMLTGLWSKEELERAVAMLEDLQMSVGY 681



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 88/337 (26%), Positives = 165/337 (48%), Gaps = 10/337 (2%)

Query: 163 YVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLP-SEHTYKVLVEGLCG 221
           Y++R R L PS++ +  ++ G+    G       L + ++   +P + +++ +L++  C 
Sbjct: 71  YMVRSRPL-PSVIDFCKLM-GVVVRMGRPDVVISLHKKMEMLRMPCNAYSFTILMKCFCS 128

Query: 222 ESDLEKARKVLQFMLSKKDVDRTRIC-NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVI 280
            S L  A       ++K     T +  N  L  LC+    +E L+    +    C+P+V+
Sbjct: 129 CSKLPFALSTFG-KITKLGFHPTVVTFNTLLHGLCVEDRISEALD----LFHQMCKPNVV 183

Query: 281 TLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQ 340
           T  T++NG C+ GR+ EA+ +L+ M+      P+ +T+ TI+ G+  +G    ALNLL +
Sbjct: 184 TFTTLMNGLCREGRVVEAVALLDRMLEDGL-QPNQITYGTIVDGMCKMGDTVSALNLLRK 242

Query: 341 VMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN 400
           +       P +V YN ++ GL++  R  +A  +F  M    +  D  TY  +I+G C S 
Sbjct: 243 MEEVSHIIPNVVIYNTIIDGLWKDGRHSDAHNLFIEMQEKEIFPDIVTYNCMINGFCISG 302

Query: 401 QLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYN 460
           +  +A++   +++      D   ++A+I    + GK  EA     E++   + P+ V Y+
Sbjct: 303 RWSDAEQLLQEMLERKINPDVVTFSALINAFVKEGKFFEAEELYDEMLPRSIIPSTVTYS 362

Query: 461 VVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            +IDG CK +    A  +       G +PD +T+  L
Sbjct: 363 SMIDGFCKQNRLDAAEHMFYLTPTKGCSPDIITFNTL 399


>gi|356524104|ref|XP_003530672.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Glycine max]
          Length = 742

 Score =  224 bits (571), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 142/505 (28%), Positives = 250/505 (49%), Gaps = 46/505 (9%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC L +V EAH L   M+ RG+VP+VVSY+ ++ GYC+  ++    K+ +E++  G+ PN
Sbjct: 262 LCQLGKVKEAHSLLIQMEFRGNVPDVVSYSVIVDGYCQVEQLGKVLKLMEELQRKGLKPN 321

Query: 64  SLTYSVLVRGVLRT-RDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
             TY+ ++  + +T R VE   VL      R+ + + +  +N  +  L+    + G V+ 
Sbjct: 322 QYTYNSIISFLCKTGRVVEAEQVL------RVMKNQRIFPDNVVYTTLISGFGKSGNVSV 375

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
            +++ ++M + K V +      MI  LC++G+   A ++   M  +GL P  V+Y +++ 
Sbjct: 376 EYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEVTYTALID 435

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           G CK G    A+ L  + ++ G  P+  TY  LV+GLC   +++ A ++L  M  K    
Sbjct: 436 GYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEMSEKG--- 492

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
                                            QP+V T N +ING CK+G IE+A+K++
Sbjct: 493 --------------------------------LQPNVCTYNALINGLCKVGNIEQAVKLM 520

Query: 303 NDM-VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
            +M +AG F  PD +T+TTI+     +G + +A  LL ++M  +G  P IVT+N ++ G 
Sbjct: 521 EEMDLAGFF--PDTITYTTIMDAYCKMGEMAKAHELL-RIMLDKGLQPTIVTFNVLMNGF 577

Query: 362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
                +E+ + +   ML  G++ ++TT+  ++   C  N +      +  +     + D 
Sbjct: 578 CMSGMLEDGERLIKWMLDKGIMPNATTFNSLMKQYCIRNNMRATIEIYKGMHAQGVVPDT 637

Query: 422 YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
             Y  +IKG C++  + EA     E+V+ G +     YN +I G  K     EA ++  E
Sbjct: 638 NTYNILIKGHCKARNMKEAWFLHKEMVEKGFSLTAASYNSLIKGFYKRKKFEEARKLFEE 697

Query: 482 MRKNGLNPDAVTWRILDKLHGNRGN 506
           MR +G   +   + I   ++   GN
Sbjct: 698 MRTHGFIAEKEIYDIFVDVNYEEGN 722



 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 122/493 (24%), Positives = 223/493 (45%), Gaps = 16/493 (3%)

Query: 13  AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVR 72
             +L +  K  G  P V  +          G +  A K+FD++ + GVL +  + ++ + 
Sbjct: 167 TERLIYTYKDWGAHPLV--FDVFFQVLVEAGLLLEAGKLFDKLLNYGVLVSVDSCNLFLA 224

Query: 73  GVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQ 132
            +  + D  R    +F    R   E  +  N  ++  ++  LC+ G V E   +   M  
Sbjct: 225 RLSNSFDGIRTAFRVF----REYSEVGVCWNTVSYNIILHLLCQLGKVKEAHSLLIQMEF 280

Query: 133 GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMR 192
             +V +  +   ++D  C+  +     +++  ++++GL P+  +YNSI+  LCK G  + 
Sbjct: 281 RGNVPDVVSYSVIVDGYCQVEQLGKVLKLMEELQRKGLKPNQYTYNSIISFLCKTGRVVE 340

Query: 193 AYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLR 252
           A Q+L         P    Y  L+ G     ++    K+   M  KK V         + 
Sbjct: 341 AEQVLRVMKNQRIFPDNVVYTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIH 400

Query: 253 ALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCA 312
            LC      E   +   ML    +PD +T   +I+G+CK G ++EA  + N MV  K   
Sbjct: 401 GLCQAGKVVEARKLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVE-KGLT 459

Query: 313 PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKE 372
           P+ VT+T ++ GL   G +  A  LL++ M ++G  P + TYNA++ GL ++  +E+A +
Sbjct: 460 PNVVTYTALVDGLCKCGEVDIANELLHE-MSEKGLQPNVCTYNALINGLCKVGNIEQAVK 518

Query: 373 VFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRF----WDDIVWPSNIHDNYVYAAMI 428
           +   M   G   D+ TY  ++D  C+  ++ +A        D  + P+ +     +  ++
Sbjct: 519 LMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIV----TFNVLM 574

Query: 429 KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLN 488
            G C SG + +    +  ++D G+ PN   +N ++   C  +  R   +I + M   G+ 
Sbjct: 575 NGFCMSGMLEDGERLIKWMLDKGIMPNATTFNSLMKQYCIRNNMRATIEIYKGMHAQGVV 634

Query: 489 PDAVTWRILDKLH 501
           PD  T+ IL K H
Sbjct: 635 PDTNTYNILIKGH 647



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 144/316 (45%), Gaps = 40/316 (12%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C    + EA  L   M  +G  PNVV+YT L+ G C+ GE+D+A ++  EM   G+
Sbjct: 434 IDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEMSEKGL 493

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN  TY+ L+ G+ +  ++E+A  LM        EE DL+                G+ 
Sbjct: 494 QPNVCTYNALINGLCKVGNIEQAVKLM--------EEMDLA----------------GFF 529

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +                      ++D+ C+ G    A  ++ +M  +GL P++V++N +
Sbjct: 530 PDTITYTT----------------IMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVL 573

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++G C  G      +L++  +  G +P+  T+  L++  C  +++    ++ + M ++  
Sbjct: 574 MNGFCMSGMLEDGERLIKWMLDKGIMPNATTFNSLMKQYCIRNNMRATIEIYKGMHAQGV 633

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           V  T   NI ++  C  +N  E   +   M++        + N++I GF K  + EEA K
Sbjct: 634 VPDTNTYNILIKGHCKARNMKEAWFLHKEMVEKGFSLTAASYNSLIKGFYKRKKFEEARK 693

Query: 301 VLNDMVAGKFCAPDAV 316
           +  +M    F A   +
Sbjct: 694 LFEEMRTHGFIAEKEI 709



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 99/217 (45%), Gaps = 5/217 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC +  + +A KL  +M   G  P+ ++YTT++  YC+ GEM  A+++   M   G+
Sbjct: 504 INGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGL 563

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P  +T++VL+ G   +  +E    L+     +   ++ +  N   F +L+   C    +
Sbjct: 564 QPTIVTFNVLMNGFCMSGMLEDGERLI-----KWMLDKGIMPNATTFNSLMKQYCIRNNM 618

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                I + M     V +      +I   C++     A  +   M ++G + +  SYNS+
Sbjct: 619 RATIEIYKGMHAQGVVPDTNTYNILIKGHCKARNMKEAWFLHKEMVEKGFSLTAASYNSL 678

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVE 217
           + G  K      A +L EE    G++  +  Y + V+
Sbjct: 679 IKGFYKRKKFEEARKLFEEMRTHGFIAEKEIYDIFVD 715



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 67/140 (47%)

Query: 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAA 426
           +  A  VF     +GV  ++ +Y I++  LC+  ++ EA      + +  N+ D   Y+ 
Sbjct: 233 IRTAFRVFREYSEVGVCWNTVSYNIILHLLCQLGKVKEAHSLLIQMEFRGNVPDVVSYSV 292

Query: 427 MIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG 486
           ++ G C+  ++ + +  + EL   G+ PN   YN +I   CK     EA Q+LR M+   
Sbjct: 293 IVDGYCQVEQLGKVLKLMEELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQR 352

Query: 487 LNPDAVTWRILDKLHGNRGN 506
           + PD V +  L    G  GN
Sbjct: 353 IFPDNVVYTTLISGFGKSGN 372


>gi|326505926|dbj|BAJ91202.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 669

 Score =  224 bits (570), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 139/491 (28%), Positives = 245/491 (49%), Gaps = 13/491 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R  +A ++    ++ G   +V +Y TL+ GYCR G +D A ++   M    V P+
Sbjct: 84  LCRRGRTSDAARVLRTAEASGAPVDVFAYNTLVAGYCRYGRLDAARRLIASM---PVPPD 140

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           + TY+ ++RG+     V  A  L+  + +R  +   ++     +  L++++C+     E 
Sbjct: 141 AYTYTPIIRGLCDRGRVGDALALLDDMLQRGCQPSVVT-----YTVLLEAVCKSSGFGEA 195

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             + ++M              +I+ +CR GR   A  ++  +   G  P +VSY +++ G
Sbjct: 196 MNVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAKEILNRLSSYGFQPDIVSYTTVLKG 255

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LC          L  E +    +P+E T+ +LV   C    +E+A +VLQ M        
Sbjct: 256 LCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPN 315

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
           T +CNI + A+C      +  + L  M    C PD I+  TV+ G C+ GR E A ++L 
Sbjct: 316 TTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKELLP 375

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           +MV  K C P+ VTF T I  L   G I++A+ L+ ++MP+ G S GIVTYNA++ G   
Sbjct: 376 EMVR-KNCPPNEVTFNTFICILCQKGLIEQAIKLI-ELMPEYGCSVGIVTYNALVHGFCV 433

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
             RV+ A E+FN    +    ++ TY  ++ GLC + +LD A      ++      +   
Sbjct: 434 QGRVDSALELFN---NLPCEPNTITYTTLLTGLCHAERLDAAAELLAGMIQKDCPLNAVT 490

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           +  ++   C+ G + EA+  + ++++ G TPN++ +N ++DG  K     EA ++L  + 
Sbjct: 491 FNVLVSFFCQKGFVEEAMELVNQMMEHGCTPNLITFNTLLDGITKDCNSEEALELLHGLV 550

Query: 484 KNGLNPDAVTW 494
             G++ D +T+
Sbjct: 551 SKGVSLDTITY 561



 Score =  207 bits (527), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 137/494 (27%), Positives = 235/494 (47%), Gaps = 10/494 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   RVG+A  L  DM  RG  P+VV+YT L+   C++     A  V DEMR  G  PN
Sbjct: 151 LCDRGRVGDALALLDDMLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPN 210

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY+V++ G+ R   V+ A  ++ +L     + + +S     +  ++  LC     ++V
Sbjct: 211 IVTYNVIINGMCREGRVDDAKEILNRLSSYGFQPDIVS-----YTTVLKGLCAARRWDDV 265

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             +  +M   K V  E     ++   CR G    A +V+  M + G TP+    N +++ 
Sbjct: 266 KVLFAEMVDKKCVPNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINA 325

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           +CK G    AY  L     +G  P   +Y  ++ GLC     E A+++L  M+ K     
Sbjct: 326 ICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPN 385

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               N ++  LC      + + ++  M +  C   ++T N +++GFC  GR++ AL++ N
Sbjct: 386 EVTFNTFICILCQKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELFN 445

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           ++     C P+ +T+TT++ GL +  R+  A  LL   M Q+      VT+N ++    +
Sbjct: 446 NLP----CEPNTITYTTLLTGLCHAERLDAAAELLAG-MIQKDCPLNAVTFNVLVSFFCQ 500

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
              VEEA E+ N M+  G   +  T+  ++DG+ +    +EA      +V      D   
Sbjct: 501 KGFVEEAMELVNQMMEHGCTPNLITFNTLLDGITKDCNSEEALELLHGLVSKGVSLDTIT 560

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y++++  L R  +  EA+  L+ + D G+ P +  YN ++   CK     +A      M 
Sbjct: 561 YSSVVDVLSREDRTEEAIQMLHAVQDMGMRPKVGMYNKILFALCKRCETDQAIDFFAYMV 620

Query: 484 KNGLNPDAVTWRIL 497
            NG  P+  T+ IL
Sbjct: 621 SNGCMPNESTYIIL 634



 Score =  203 bits (517), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 129/490 (26%), Positives = 243/490 (49%), Gaps = 16/490 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ +C  S  GEA  +  +M+++G  PN+V+Y  +I+G CR G +D A ++ + +   G 
Sbjct: 183 LEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAKEILNRLSSYGF 242

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ ++Y+ +++G+   R  +   VL  ++ ++         N   F  LV   CR G V
Sbjct: 243 QPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDK-----KCVPNEVTFDMLVRFFCRGGMV 297

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
               ++ + M Q         C  +I+++C+ GR   A   +  M   G  P  +SY ++
Sbjct: 298 ERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTV 357

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GLC+ G    A +LL E ++    P+E T+   +  LC +  +E+A K+++ M     
Sbjct: 358 LRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIELMPEYGC 417

Query: 241 VDRTRICNIYLRALCL---IKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
                  N  +   C+   + +  EL N L       C+P+ IT  T++ G C   R++ 
Sbjct: 418 SVGIVTYNALVHGFCVQGRVDSALELFNNL------PCEPNTITYTTLLTGLCHAERLDA 471

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           A ++L  M+  K C  +AVTF  ++      G ++EA+ L+ Q+M + G +P ++T+N +
Sbjct: 472 AAELLAGMIQ-KDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMM-EHGCTPNLITFNTL 529

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 417
           L G+ +    EEA E+ + ++  GV  D+ TY+ V+D L   ++ +EA +    +     
Sbjct: 530 LDGITKDCNSEEALELLHGLVSKGVSLDTITYSSVVDVLSREDRTEEAIQMLHAVQDMGM 589

Query: 418 IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQ 477
                +Y  ++  LC+  +  +A+ F   +V +G  PN   Y ++I+G     + +EA  
Sbjct: 590 RPKVGMYNKILFALCKRCETDQAIDFFAYMVSNGCMPNESTYIILIEGLAHEGLLKEARY 649

Query: 478 ILREMRKNGL 487
           +L E+   G+
Sbjct: 650 VLSELYAKGV 659



 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 124/496 (25%), Positives = 209/496 (42%), Gaps = 48/496 (9%)

Query: 10  VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSV 69
           + EA +L     SRG  P+V   T LI   CR G    A +V                  
Sbjct: 55  LAEAARLVETSSSRGEAPDVYLCTKLIRNLCRRGRTSDAARV------------------ 96

Query: 70  LVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAED 129
                LRT +   A V +F                 A+  LV   CR G ++   R+   
Sbjct: 97  -----LRTAEASGAPVDVF-----------------AYNTLVAGYCRYGRLDAARRLIAS 134

Query: 130 MPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG 189
           MP      + +    +I  LC  GR   A  ++  M +RG  PS+V+Y  ++  +CK  G
Sbjct: 135 MPVPP---DAYTYTPIIRGLCDRGRVGDALALLDDMLQRGCQPSVVTYTVLLEAVCKSSG 191

Query: 190 CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNI 249
              A  +L+E    G  P+  TY V++ G+C E  ++ A+++L  + S            
Sbjct: 192 FGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAKEILNRLSSYGFQPDIVSYTT 251

Query: 250 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK 309
            L+ LC  +   ++  +   M+  +C P+ +T + ++  FC+ G +E A++VL  M +  
Sbjct: 252 VLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRFFCRGGMVERAIQVLQQM-SQH 310

Query: 310 FCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEE 369
            C P+      +I  +   GR+ +A + L   M   G +P  ++Y  VLRGL R  R E 
Sbjct: 311 GCTPNTTLCNIVINAICKQGRVDDAYDFLNN-MGMYGCNPDTISYTTVLRGLCRAGRWEH 369

Query: 370 AKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIK 429
           AKE+   M+      +  T+   I  LC+   +++A +  + +           Y A++ 
Sbjct: 370 AKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIELMPEYGCSVGIVTYNALVH 429

Query: 430 GLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNP 489
           G C  G++  A+     L      PN + Y  ++ G C       A ++L  M +     
Sbjct: 430 GFCVQGRVDSALELFNNL---PCEPNTITYTTLLTGLCHAERLDAAAELLAGMIQKDCPL 486

Query: 490 DAVTWRILDKLHGNRG 505
           +AVT+ +L      +G
Sbjct: 487 NAVTFNVLVSFFCQKG 502



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 86/310 (27%), Positives = 144/310 (46%), Gaps = 38/310 (12%)

Query: 219 LCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPD 278
           L    DL +A ++++   S+ +     +C   +R LC     ++   VL     +    D
Sbjct: 49  LIARDDLAEAARLVETSSSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRTAEASGAPVD 108

Query: 279 VITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLL 338
           V   NT++ G+C+ GR++ A +++  M       PDA T+T II GL + GR+ +AL LL
Sbjct: 109 VFAYNTLVAGYCRYGRLDAARRLIASMPV----PPDAYTYTPIIRGLCDRGRVGDALALL 164

Query: 339 --------------YQV--------------------MPQRGYSPGIVTYNAVLRGLFRL 364
                         Y V                    M  +G +P IVTYN ++ G+ R 
Sbjct: 165 DDMLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCRE 224

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY 424
            RV++AKE+ N +   G   D  +Y  V+ GLC + + D+ K  + ++V    + +   +
Sbjct: 225 GRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTF 284

Query: 425 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484
             +++  CR G +  A+  L ++   G TPN    N+VI+  CK     +AY  L  M  
Sbjct: 285 DMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGM 344

Query: 485 NGLNPDAVTW 494
            G NPD +++
Sbjct: 345 YGCNPDTISY 354



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 108/453 (23%), Positives = 201/453 (44%), Gaps = 74/453 (16%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ +C   RV +A ++   + S G  P++VSYTT++ G C     D    +F EM     
Sbjct: 218 INGMCREGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKC 277

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLV-DSLCREGY 119
           +PN +T+ +LVR   R   VERA     ++ ++M +       N    N+V +++C++G 
Sbjct: 278 VPNEVTFDMLVRFFCRGGMVERA----IQVLQQMSQHG--CTPNTTLCNIVINAICKQGR 331

Query: 120 VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           V++ +    +M       +  +   ++  LCR+GR   A  ++  M ++   P+ V++N+
Sbjct: 332 VDDAYDFLNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNT 391

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFG-----------------------------YLPSEH 210
            +  LC+ G   +A +L+E   ++G                              LP E 
Sbjct: 392 FICILCQKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELFNNLPCEP 451

Query: 211 ---TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVL 267
              TY  L+ GLC    L+ A ++L  M+ K         N+ +   C      E + ++
Sbjct: 452 NTITYTTLLTGLCHAERLDAAAELLAGMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELV 511

Query: 268 VFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLN 327
             M++  C P++IT NT+++G  K    EEAL++L+ +V+ K  + D +T+++++  L  
Sbjct: 512 NQMMEHGCTPNLITFNTLLDGITKDCNSEEALELLHGLVS-KGVSLDTITYSSVVDVLSR 570

Query: 328 VGRIQEALNLLYQV----------------------------------MPQRGYSPGIVT 353
             R +EA+ +L+ V                                  M   G  P   T
Sbjct: 571 EDRTEEAIQMLHAVQDMGMRPKVGMYNKILFALCKRCETDQAIDFFAYMVSNGCMPNEST 630

Query: 354 YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
           Y  ++ GL     ++EA+ V + +   GV++ S
Sbjct: 631 YIILIEGLAHEGLLKEARYVLSELYAKGVLSKS 663


>gi|356529513|ref|XP_003533335.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 794

 Score =  224 bits (570), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 138/497 (27%), Positives = 253/497 (50%), Gaps = 8/497 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   +V EA  +   M       NV++Y+TL+ GY    E+  A  VF+ M   GV
Sbjct: 210 VDALCKEGKVKEAKSVLAVMLKACVKSNVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGV 269

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+  +Y++++ G  + + V++A      L++ M       +    F  ++DS  +  + 
Sbjct: 270 TPDVHSYNIMINGFCKIKRVDKA----LNLFKEMILSRFPPI--IQFNKILDSFAKMKHY 323

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +    ++  +       + F    +I+  C  G+      V+  + KRG  PS V+ N++
Sbjct: 324 STAVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFGFSVLAKILKRGYPPSTVTLNTL 383

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GLC  G   +A    ++ +  G+  ++ +Y  L+ G+C   D   A K+L+ +  +  
Sbjct: 384 IKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRLT 443

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                + +  + ALC  +  +E   +   M       DV+T +T+I GFC +G+++EA+ 
Sbjct: 444 KPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIVGKLKEAIG 503

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +LN+MV  K   PD  T+T ++  L   G+++EA ++L  VM +    P + TYN ++ G
Sbjct: 504 LLNEMVL-KTINPDVRTYTILVDALGKEGKVKEAKSVL-AVMLKACVKPDVFTYNTLMNG 561

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
              +  V++A+ VFN M  +GV  D  TY I+I+G C+S  +DEA   + ++   + + D
Sbjct: 562 YLLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKSKMVDEALNLFKEMHQKNMVPD 621

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              Y++++ GLC+SG+I      + E+ D G   +++ YN +IDG CK     +A  +  
Sbjct: 622 TVTYSSLVDGLCKSGRISYVWDLIDEMRDRGQPADVITYNSLIDGLCKNGHLDKAIALFN 681

Query: 481 EMRKNGLNPDAVTWRIL 497
           +M+  G+ P+  T+ IL
Sbjct: 682 KMKDQGIRPNTFTFTIL 698



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 132/491 (26%), Positives = 247/491 (50%), Gaps = 15/491 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D    +     A  L   ++ +G  P++ +   LI+ +C  G++   + V  ++   G 
Sbjct: 314 LDSFAKMKHYSTAVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFGFSVLAKILKRGY 373

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+++T + L++G+     V++A     KL       +   +N  ++A L++ +C+ G  
Sbjct: 374 PPSTVTLNTLIKGLCLKGQVKKALHFHDKLLA-----QGFQLNQVSYATLINGVCKIGDT 428

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
               ++   +    +         +ID+LC+      A  +   M  +G++  +V+Y+++
Sbjct: 429 RGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTL 488

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS--- 237
           ++G C  G    A  LL E +     P   TY +LV+ L  E  +++A+ VL  ML    
Sbjct: 489 IYGFCIVGKLKEAIGLLNEMVLKTINPDVRTYTILVDALGKEGKVKEAKSVLAVMLKACV 548

Query: 238 KKDV-DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIE 296
           K DV     + N YL  +  +K    + N +  M  T   PDV T   +INGFCK   ++
Sbjct: 549 KPDVFTYNTLMNGYL-LVYEVKKAQHVFNAMSLMGVT---PDVHTYTILINGFCKSKMVD 604

Query: 297 EALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
           EAL +  +M   K   PD VT+++++ GL   GRI    +L+ + M  RG    ++TYN+
Sbjct: 605 EALNLFKEM-HQKNMVPDTVTYSSLVDGLCKSGRISYVWDLIDE-MRDRGQPADVITYNS 662

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416
           ++ GL +   +++A  +FN M   G+  ++ T+ I++DGLC+  +L +A+  + D++   
Sbjct: 663 LIDGLCKNGHLDKAIALFNKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKG 722

Query: 417 NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAY 476
              D Y+Y  MI G C+ G + EA+  L ++ ++G  PN V ++++I+   K     +A 
Sbjct: 723 YHLDVYIYNVMIYGHCKQGLLEEALTMLSKMEENGCIPNAVTFDIIINALFKKDENDKAE 782

Query: 477 QILREMRKNGL 487
           ++LR+M   GL
Sbjct: 783 KLLRQMIARGL 793



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 143/533 (26%), Positives = 249/533 (46%), Gaps = 45/533 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEM----- 55
           MD    +  V +A  +F  M   G  P+V SY  +I+G+C+   +D A  +F EM     
Sbjct: 245 MDGYFLVYEVKKAQHVFNAMSLMGVTPDVHSYNIMINGFCKIKRVDKALNLFKEMILSRF 304

Query: 56  ----------------RHC-------------GVLPNSLTYSVLVRGVLRTRDVERANVL 86
                           +H              G+ P+  T ++L+        +     +
Sbjct: 305 PPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFGFSV 364

Query: 87  MFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDM-PQGKSVNEEFACGHM 145
           + K+ +R      +++N      L+  LC +G V +     + +  QG  +N+  +   +
Sbjct: 365 LAKILKRGYPPSTVTLNT-----LIKGLCLKGQVKKALHFHDKLLAQGFQLNQ-VSYATL 418

Query: 146 IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY 205
           I+ +C+ G   GA +++  +  R   P++  Y++I+  LCK+     AY L  E    G 
Sbjct: 419 INGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGI 478

Query: 206 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 265
                TY  L+ G C    L++A  +L  M+ K      R   I + AL       E  +
Sbjct: 479 SADVVTYSTLIYGFCIVGKLKEAIGLLNEMVLKTINPDVRTYTILVDALGKEGKVKEAKS 538

Query: 266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM-VAGKFCAPDAVTFTTIIFG 324
           VL  ML+   +PDV T NT++NG+  +  +++A  V N M + G    PD  T+T +I G
Sbjct: 539 VLAVMLKACVKPDVFTYNTLMNGYLLVYEVKKAQHVFNAMSLMG--VTPDVHTYTILING 596

Query: 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 384
                 + EALNL ++ M Q+   P  VTY++++ GL +  R+    ++ + M   G  A
Sbjct: 597 FCKSKMVDEALNL-FKEMHQKNMVPDTVTYSSLVDGLCKSGRISYVWDLIDEMRDRGQPA 655

Query: 385 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFL 444
           D  TY  +IDGLC++  LD+A   ++ +       + + +  ++ GLC+ G++ +A    
Sbjct: 656 DVITYNSLIDGLCKNGHLDKAIALFNKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVF 715

Query: 445 YELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            +L+  G   ++  YNV+I G CK  +  EA  +L +M +NG  P+AVT+ I+
Sbjct: 716 QDLLTKGYHLDVYIYNVMIYGHCKQGLLEEALTMLSKMEENGCIPNAVTFDII 768



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 127/484 (26%), Positives = 228/484 (47%), Gaps = 10/484 (2%)

Query: 23  RGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVER 82
           RG+ P+ V+  TLI G C  G++  A    D++   G   N ++Y+ L+ GV R  D   
Sbjct: 57  RGYPPDTVTLNTLIKGLCLKGQVKEALHFHDKLLAQGFQLNQVSYATLINGVCRIGDTRA 116

Query: 83  ANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP-QGKSVNEEFA 141
           A   + K+  R+ +      N   +  ++D+LC+   V+E + +  +M  +G S N    
Sbjct: 117 AIKFLRKIDGRLAKP-----NVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGISAN-VVT 170

Query: 142 CGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGI 201
              +I   C  G+   A  ++ VM  + + P++ +YN +V  LCK G    A  +L   +
Sbjct: 171 YSTLIYGFCIVGKLKEALGLLNVMVLKTINPNVCTYNILVDALCKEGKVKEAKSVLAVML 230

Query: 202 QFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPT 261
           +     +  TY  L++G     +++KA+ V   M            NI +   C IK   
Sbjct: 231 KACVKSNVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHSYNIMINGFCKIKRVD 290

Query: 262 ELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTI 321
           + LN+   M+ ++  P +I  N +++ F KM     A+  L+  +  K   PD  T   +
Sbjct: 291 KALNLFKEMILSRFPP-IIQFNKILDSFAKMKHYSTAVS-LSHRLELKGIQPDLFTLNIL 348

Query: 322 IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG 381
           I    ++G+I    ++L +++ +RGY P  VT N +++GL    +V++A    + +L  G
Sbjct: 349 INCFCHMGQITFGFSVLAKIL-KRGYPPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQG 407

Query: 382 VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAV 441
              +  +YA +I+G+C+      A +    I       +  +Y+ +I  LC+   + EA 
Sbjct: 408 FQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAY 467

Query: 442 HFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLH 501
               E+   G++ ++V Y+ +I G C +   +EA  +L EM    +NPD  T+ IL    
Sbjct: 468 GLFSEMTVKGISADVVTYSTLIYGFCIVGKLKEAIGLLNEMVLKTINPDVRTYTILVDAL 527

Query: 502 GNRG 505
           G  G
Sbjct: 528 GKEG 531



 Score =  164 bits (416), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 124/496 (25%), Positives = 234/496 (47%), Gaps = 12/496 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   +V EA      + ++G   N VSY TLI+G CR G+   A K   ++      PN
Sbjct: 73  LCLKGQVKEALHFHDKLLAQGFQLNQVSYATLINGVCRIGDTRAAIKFLRKIDGRLAKPN 132

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
              Y+ ++  + + + V  A    + L+  M   + +S N   ++ L+   C  G + E 
Sbjct: 133 VEMYNTIIDALCKYQLVSEA----YGLFSEM-TVKGISANVVTYSTLIYGFCIVGKLKEA 187

Query: 124 FRIAEDMPQGKSVNEEFACGH--MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
             +   M   K++N    C +  ++D+LC+ G+   A  V+ VM K  +  ++++Y++++
Sbjct: 188 LGLLNVMVL-KTINPN-VCTYNILVDALCKEGKVKEAKSVLAVMLKACVKSNVITYSTLM 245

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
            G        +A  +       G  P  H+Y +++ G C    ++KA  + + M+  +  
Sbjct: 246 DGYFLVYEVKKAQHVFNAMSLMGVTPDVHSYNIMINGFCKIKRVDKALNLFKEMILSRFP 305

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
              +  N  L +   +K+ +  +++   +     QPD+ TLN +IN FC MG+I     V
Sbjct: 306 PIIQF-NKILDSFAKMKHYSTAVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFGFSV 364

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
           L  ++   +  P  VT  T+I GL   G++++AL+   +++ Q G+    V+Y  ++ G+
Sbjct: 365 LAKILKRGY-PPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQ-GFQLNQVSYATLINGV 422

Query: 362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
            ++     A ++   + G     +   Y+ +ID LC+   + EA   + ++       D 
Sbjct: 423 CKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADV 482

Query: 422 YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
             Y+ +I G C  GK+ EA+  L E+V   + P++  Y +++D   K    +EA  +L  
Sbjct: 483 VTYSTLIYGFCIVGKLKEAIGLLNEMVLKTINPDVRTYTILVDALGKEGKVKEAKSVLAV 542

Query: 482 MRKNGLNPDAVTWRIL 497
           M K  + PD  T+  L
Sbjct: 543 MLKACVKPDVFTYNTL 558



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/336 (26%), Positives = 167/336 (49%), Gaps = 9/336 (2%)

Query: 167 KRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLE 226
           KRG  P  V+ N+++ GLC  G    A    ++ +  G+  ++ +Y  L+ G+C   D  
Sbjct: 56  KRGYPPDTVTLNTLIKGLCLKGQVKEALHFHDKLLAQGFQLNQVSYATLINGVCRIGDTR 115

Query: 227 KARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVI 286
            A K L+ +  +       + N  + ALC  +  +E   +   M       +V+T +T+I
Sbjct: 116 AAIKFLRKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGISANVVTYSTLI 175

Query: 287 NGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
            GFC +G+++EAL +LN MV  K   P+  T+  ++  L   G+++EA ++L  VM +  
Sbjct: 176 YGFCIVGKLKEALGLLNVMVL-KTINPNVCTYNILVDALCKEGKVKEAKSVL-AVMLKAC 233

Query: 347 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
               ++TY+ ++ G F +  V++A+ VFN M  +GV  D  +Y I+I+G C+  ++D+A 
Sbjct: 234 VKSNVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHSYNIMINGFCKIKRVDKAL 293

Query: 407 RFWDDIV---WPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463
             + +++   +P  I  N +    +    +      AV   + L   G+ P++   N++I
Sbjct: 294 NLFKEMILSRFPPIIQFNKI----LDSFAKMKHYSTAVSLSHRLELKGIQPDLFTLNILI 349

Query: 464 DGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
           +  C +      + +L ++ K G  P  VT   L K
Sbjct: 350 NCFCHMGQITFGFSVLAKILKRGYPPSTVTLNTLIK 385



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 93/383 (24%), Positives = 174/383 (45%), Gaps = 42/383 (10%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    V EA+ LF +M  +G   +VV+Y+TLI+G+C  G++  A  + +EM    +
Sbjct: 454 IDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIVGKLKEAIGLLNEMVLKTI 513

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+  TY++LV  + +   V+ A  ++  + +   + +  + N      L+    ++   
Sbjct: 514 NPDVRTYTILVDALGKEGKVKEAKSVLAVMLKACVKPDVFTYNTLMNGYLLVYEVKKA-- 571

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
             VF     M     V+       +I+  C+S     A  +   M ++ + P  V+Y+S+
Sbjct: 572 QHVFNAMSLMGVTPDVHTYTI---LINGFCKSKMVDEALNLFKEMHQKNMVPDTVTYSSL 628

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           V GLCK G     + L++E    G      TY  L++GLC    L+KA  +   M   KD
Sbjct: 629 VDGLCKSGRISYVWDLIDEMRDRGQPADVITYNSLIDGLCKNGHLDKAIALFNKM---KD 685

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                              +P+  T   +++G CK GR+++A +
Sbjct: 686 --------------------------------QGIRPNTFTFTILLDGLCKGGRLKDAQE 713

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           V  D++   +   D   +  +I+G    G ++EAL +L + M + G  P  VT++ ++  
Sbjct: 714 VFQDLLTKGYHL-DVYIYNVMIYGHCKQGLLEEALTMLSK-MEENGCIPNAVTFDIIINA 771

Query: 361 LFRLRRVEEAKEVFNCMLGIGVV 383
           LF+    ++A+++   M+  G++
Sbjct: 772 LFKKDENDKAEKLLRQMIARGLL 794



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/309 (26%), Positives = 152/309 (49%), Gaps = 11/309 (3%)

Query: 193 AYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKA----RKVLQFMLSKKDVDRTRICN 248
           +  +L + ++ GY P   T   L++GLC +  +++A     K+L        V    + N
Sbjct: 47  SLSVLTKILKRGYPPDTVTLNTLIKGLCLKGQVKEALHFHDKLLAQGFQLNQVSYATLIN 106

Query: 249 IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 308
                +C I +    +  L  +     +P+V   NT+I+  CK   + EA  + ++M   
Sbjct: 107 ----GVCRIGDTRAAIKFLRKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTV- 161

Query: 309 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE 368
           K  + + VT++T+I+G   VG+++EAL LL  VM  +  +P + TYN ++  L +  +V+
Sbjct: 162 KGISANVVTYSTLIYGFCIVGKLKEALGLL-NVMVLKTINPNVCTYNILVDALCKEGKVK 220

Query: 369 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI 428
           EAK V   ML   V ++  TY+ ++DG     ++ +A+  ++ +       D + Y  MI
Sbjct: 221 EAKSVLAVMLKACVKSNVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHSYNIMI 280

Query: 429 KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLN 488
            G C+  ++ +A++   E++ S   P I+ +N ++D   K+     A  +   +   G+ 
Sbjct: 281 NGFCKIKRVDKALNLFKEMILSRFPP-IIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQ 339

Query: 489 PDAVTWRIL 497
           PD  T  IL
Sbjct: 340 PDLFTLNIL 348



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/269 (26%), Positives = 132/269 (49%), Gaps = 4/269 (1%)

Query: 231 VLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFC 290
           VL  +L +     T   N  ++ LCL     E L+    +L    Q + ++  T+ING C
Sbjct: 50  VLTKILKRGYPPDTVTLNTLIKGLCLKGQVKEALHFHDKLLAQGFQLNQVSYATLINGVC 109

Query: 291 KMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG 350
           ++G    A+K L   + G+   P+   + TII  L     + EA  L  + M  +G S  
Sbjct: 110 RIGDTRAAIKFLRK-IDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSE-MTVKGISAN 167

Query: 351 IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD 410
           +VTY+ ++ G   + +++EA  + N M+   +  +  TY I++D LC+  ++ EAK    
Sbjct: 168 VVTYSTLIYGFCIVGKLKEALGLLNVMVLKTINPNVCTYNILVDALCKEGKVKEAKSVL- 226

Query: 411 DIVWPSNIHDNYV-YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKL 469
            ++  + +  N + Y+ ++ G     ++ +A H    +   GVTP++  YN++I+G CK+
Sbjct: 227 AVMLKACVKSNVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHSYNIMINGFCKI 286

Query: 470 SMKREAYQILREMRKNGLNPDAVTWRILD 498
               +A  + +EM  +   P     +ILD
Sbjct: 287 KRVDKALNLFKEMILSRFPPIIQFNKILD 315


>gi|334183590|ref|NP_176479.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75179661|sp|Q9LQ16.1|PPR94_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62910
 gi|8493578|gb|AAF75801.1|AC011000_4 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
           repeats [Arabidopsis thaliana]
 gi|332195899|gb|AEE34020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 632

 Score =  224 bits (570), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 134/494 (27%), Positives = 250/494 (50%), Gaps = 42/494 (8%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C  S++  A  +   M   G+ P++V+ ++L++GYC +  +  A  + D+M   G  P+
Sbjct: 128 FCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPD 187

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           + T++ L+ G+        A  L+ ++ +R   + DL      +  +V+ LC+ G ++  
Sbjct: 188 TFTFTTLIHGLFLHNKASEAVALVDQMVQR-GCQPDL----VTYGTVVNGLCKRGDIDLA 242

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             + + M +GK   +      +ID LC+      A  +   M  +G+ P + +Y+S++  
Sbjct: 243 LSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISC 302

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LC +G    A +LL + I+    P+  T+  L++    E  L +A K+   M+ K+ +D 
Sbjct: 303 LCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMI-KRSID- 360

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                                            PD+ T +++INGFC   R++EA K + 
Sbjct: 361 ---------------------------------PDIFTYSSLINGFCMHDRLDEA-KHMF 386

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           +++  K C P+ VT++T+I G     R++E + L ++ M QRG     VTY  ++ G F+
Sbjct: 387 ELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMEL-FREMSQRGLVGNTVTYTTLIHGFFQ 445

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
            R  + A+ VF  M+ +GV  +  TY I++DGLC++ +L +A   ++ +   +   D Y 
Sbjct: 446 ARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYT 505

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y  MI+G+C++GK+ +       L   GV+PN++ YN +I G C+   K EA  +L++M+
Sbjct: 506 YNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMK 565

Query: 484 KNGLNPDAVTWRIL 497
           ++G  P++ T+  L
Sbjct: 566 EDGPLPNSGTYNTL 579



 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 132/501 (26%), Positives = 240/501 (47%), Gaps = 43/501 (8%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C   R+ +A  L   M   G+ P+  ++TTLIHG     +   A  + D+M   G  P+ 
Sbjct: 164 CHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDL 223

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           +TY  +V G+ +  D++ A  L+ K+ E+ K E D+ + N     ++D LC+  ++++  
Sbjct: 224 VTYGTVVNGLCKRGDIDLALSLLKKM-EKGKIEADVVIYNT----IIDGLCKYKHMDDAL 278

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
            +  +M       + F    +I  LC  GR   ASR++  M +R + P++V++++++   
Sbjct: 279 NLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAF 338

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
            K G  + A +L +E I+    P   TY  L+ G C    L++A+ + + M+SK      
Sbjct: 339 VKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISK------ 392

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
                                         C P+V+T +T+I GFCK  R+EE +++  +
Sbjct: 393 -----------------------------DCFPNVVTYSTLIKGFCKAKRVEEGMELFRE 423

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
           M + +    + VT+TT+I G         A  ++++ M   G  P I+TYN +L GL + 
Sbjct: 424 M-SQRGLVGNTVTYTTLIHGFFQARDCDNA-QMVFKQMVSVGVHPNILTYNILLDGLCKN 481

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY 424
            ++ +A  VF  +    +  D  TY I+I+G+C++ ++++    + ++       +   Y
Sbjct: 482 GKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAY 541

Query: 425 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484
             MI G CR G   EA   L ++ + G  PN   YN +I    +   +  + ++++EMR 
Sbjct: 542 NTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREASAELIKEMRS 601

Query: 485 NGLNPDAVTWRIL-DKLHGNR 504
            G   DA T  ++ + LH  R
Sbjct: 602 CGFAGDASTIGLVTNMLHDGR 622



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 121/496 (24%), Positives = 229/496 (46%), Gaps = 42/496 (8%)

Query: 2   DQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVL 61
           ++L  + +V +A  LF DM      P++V +  L+    +  + ++   + ++M+  G+ 
Sbjct: 56  NRLSDIIKVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGIS 115

Query: 62  PNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVN 121
            +  TYS+ +    R                       LS+  A  A ++    + GY  
Sbjct: 116 HDLYTYSIFINCFCR--------------------RSQLSLALAVLAKMM----KLGYEP 151

Query: 122 EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
           ++  ++                 +++  C S R   A  +V  M + G  P   ++ +++
Sbjct: 152 DIVTLSS----------------LLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLI 195

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
           HGL  H     A  L+++ +Q G  P   TY  +V GLC   D++ A  +L+ M   K  
Sbjct: 196 HGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIE 255

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
               I N  +  LC  K+  + LN+   M     +PDV T +++I+  C  GR  +A ++
Sbjct: 256 ADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRL 315

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
           L+DM+  K   P+ VTF+ +I   +  G++ EA   LY  M +R   P I TY++++ G 
Sbjct: 316 LSDMIERKI-NPNVVTFSALIDAFVKEGKLVEA-EKLYDEMIKRSIDPDIFTYSSLINGF 373

Query: 362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
               R++EAK +F  M+      +  TY+ +I G C++ +++E    + ++     + + 
Sbjct: 374 CMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNT 433

Query: 422 YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
             Y  +I G  ++     A     ++V  GV PNI+ YN+++DG CK     +A  +   
Sbjct: 434 VTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEY 493

Query: 482 MRKNGLNPDAVTWRIL 497
           ++++ + PD  T+ I+
Sbjct: 494 LQRSTMEPDIYTYNIM 509



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 108/407 (26%), Positives = 190/407 (46%), Gaps = 10/407 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC    +  A  L   M+      +VV Y T+I G C+   MD A  +F EM + G+ P+
Sbjct: 233 LCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPD 292

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             TYS L+  +        A+ L+  + ER      ++ N   F+ L+D+  +EG + E 
Sbjct: 293 VFTYSSLISCLCNYGRWSDASRLLSDMIER-----KINPNVVTFSALIDAFVKEGKLVEA 347

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            ++ ++M +     + F    +I+  C   R   A  +  +M  +   P++V+Y++++ G
Sbjct: 348 EKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKG 407

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK        +L  E  Q G + +  TY  L+ G     D + A+ V + M+S      
Sbjct: 408 FCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPN 467

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               NI L  LC      + + V  ++ ++  +PD+ T N +I G CK G++E+  ++  
Sbjct: 468 ILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFC 527

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           ++ + K  +P+ + + T+I G    G  +EA +LL + M + G  P   TYN ++R   R
Sbjct: 528 NL-SLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKK-MKEDGPLPNSGTYNTLIRARLR 585

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD 410
               E + E+   M   G   D++T  +V + L    +LD  K F D
Sbjct: 586 DGDREASAELIKEMRSCGFAGDASTIGLVTNML-HDGRLD--KSFLD 629



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 67/125 (53%), Gaps = 8/125 (6%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ +C   +V +  +LF ++  +G  PNV++Y T+I G+CR G  + A  +  +M+  G 
Sbjct: 510 IEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGP 569

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLS-VNNAAFANLVDSLCREGY 119
           LPNS TY+ L+R  LR  D E +        E +KE        +A+   LV ++  +G 
Sbjct: 570 LPNSGTYNTLIRARLRDGDREASA-------ELIKEMRSCGFAGDASTIGLVTNMLHDGR 622

Query: 120 VNEVF 124
           +++ F
Sbjct: 623 LDKSF 627



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 63/118 (53%), Gaps = 5/118 (4%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   ++ +A  +F  ++     P++ +Y  +I G C+ G+++  +++F  +   GV
Sbjct: 475 LDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGV 534

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREG 118
            PN + Y+ ++ G  R    E A+ L+    ++MKE+  L  N+  +  L+ +  R+G
Sbjct: 535 SPNVIAYNTMISGFCRKGSKEEADSLL----KKMKEDGPLP-NSGTYNTLIRARLRDG 587


>gi|297741319|emb|CBI32450.3| unnamed protein product [Vitis vinifera]
          Length = 851

 Score =  224 bits (570), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 135/482 (28%), Positives = 240/482 (49%), Gaps = 22/482 (4%)

Query: 27  PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVL 86
           PNV +Y  LI G+C  GE+      F EM   G LPN +TY+ L+    +   ++ A   
Sbjct: 8   PNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEA--- 64

Query: 87  MFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMI 146
            F L + M   + +  N  ++  +++ LCREG + E + I E+M       +E     ++
Sbjct: 65  -FGLLKSMS-SKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLL 122

Query: 147 DSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL 206
           +  C+ G  H A  +   M + G++PS+V+Y ++++ +CK     RA +  ++    G  
Sbjct: 123 NGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLR 182

Query: 207 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 266
           P+E TY  L++G   +  L +A ++L  M            N ++   C+++   E L V
Sbjct: 183 PNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGV 242

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
           +  M++    PDV++ +T+I+GFC+ G ++ A ++  +MV  K  +PDAVT++++I GL 
Sbjct: 243 VQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVE-KGVSPDAVTYSSLIQGLC 301

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
            + R+ EA + L Q M   G  P   TY  ++        + +A  + + M+  G + D+
Sbjct: 302 EMRRLTEACD-LSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDA 360

Query: 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY---------------AAMIKGL 431
            TY+++I+GL +  +  EAKR    +++  ++  +  Y                A+IKG 
Sbjct: 361 VTYSVLINGLNKQARTREAKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGF 420

Query: 432 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 491
           C  G +HEA      +V+    P    YNV+I G C+     +A+ + +EM  +G  P  
Sbjct: 421 CMKGLMHEADRVFESMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHT 480

Query: 492 VT 493
           VT
Sbjct: 481 VT 482



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 132/507 (26%), Positives = 246/507 (48%), Gaps = 29/507 (5%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C + R+ EA  L   M S+G  PN++SY  +I+G CR G M  A+++ +EM + G 
Sbjct: 52  IDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGF 111

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TY+ L+ G  +  +  +A V+  ++         +S +   +  L++S+C+   +
Sbjct: 112 TPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRN-----GVSPSVVTYTALINSMCKARNL 166

Query: 121 NEVFRIAEDMP-QGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           N      + M  +G   NE      +ID   R G  + A R++  M + G +PS+V+YN+
Sbjct: 167 NRAMEFFDQMRIRGLRPNERTYT-TLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNA 225

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
            +HG C       A  +++E ++ G  P   +Y  ++ G C + +L++A ++ Q M+ K 
Sbjct: 226 FIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKG 285

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                   +  ++ LC ++  TE  ++   ML     PD  T  T+IN +C  G + +AL
Sbjct: 286 VSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKAL 345

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
            + ++M+   F  PDAVT++ +I GL    R +EA  LL++++ +    P  VTY+ ++ 
Sbjct: 346 HLHDEMIHKGFL-PDAVTYSVLINGLNKQARTREAKRLLFKLIYEESV-PSDVTYDTLIE 403

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
                          NC        +  +   +I G C    + EA R ++ +V  ++  
Sbjct: 404 ---------------NCS-----NIEFKSVVALIKGFCMKGLMHEADRVFESMVERNHKP 443

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
              VY  +I G CR G + +A +   E++ SG  P+ V    +I    K  M  E  +++
Sbjct: 444 GEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLIKALFKEGMNEEMSEVI 503

Query: 480 REMRKNGLNPDAVTWRILDKLHGNRGN 506
            +  ++    +A   ++L +++   GN
Sbjct: 504 GDTLRSCRLNEAELAKVLVEINHKEGN 530



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 105/353 (29%), Positives = 170/353 (48%), Gaps = 37/353 (10%)

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
           +ID+ C+ GR   A  ++  M  +G+ P+L+SYN I++GLC+ G    A+++LEE    G
Sbjct: 51  LIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKG 110

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL 264
           + P E TY  L+ G C E +  +A                                   L
Sbjct: 111 FTPDEVTYNTLLNGYCKEGNFHQA-----------------------------------L 135

Query: 265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 324
            +   M++    P V+T   +IN  CK   +  A++  + M   +   P+  T+TT+I G
Sbjct: 136 VIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRI-RGLRPNERTYTTLIDG 194

Query: 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 384
               G + EA  +L + M + G+SP +VTYNA + G   L R+EEA  V   M+  G+  
Sbjct: 195 FSRQGLLNEAYRILNE-MTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAP 253

Query: 385 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFL 444
           D  +Y+ +I G C   +LD A +   ++V      D   Y+++I+GLC   ++ EA    
Sbjct: 254 DVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLS 313

Query: 445 YELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            E++D G+ P+   Y  +I+  C      +A  +  EM   G  PDAVT+ +L
Sbjct: 314 QEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVL 366



 Score = 39.3 bits (90), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 29/51 (56%)

Query: 447 LVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           ++ S V+PN+  YN++I G C +   ++      EM +NG  P+ VT+  L
Sbjct: 1   MIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTL 51


>gi|359475386|ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Vitis vinifera]
          Length = 762

 Score =  223 bits (569), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 139/502 (27%), Positives = 248/502 (49%), Gaps = 22/502 (4%)

Query: 13  AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVR 72
           A +++ +M      PNV +Y  LI G+C  GE+      F EM   G LPN +TY+ L+ 
Sbjct: 198 AEEVYREMIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLID 257

Query: 73  GVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQ 132
              +   ++ A    F L + M   + +  N  ++  +++ LCREG + E + I E+M  
Sbjct: 258 AYCKMGRIDEA----FGLLKSMS-SKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGY 312

Query: 133 GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMR 192
                +E     +++  C+ G  H A  +   M + G++PS+V+Y ++++ +CK     R
Sbjct: 313 KGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNR 372

Query: 193 AYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLR 252
           A +  ++    G  P+E TY  L++G   +  L +A ++L  M            N ++ 
Sbjct: 373 AMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIH 432

Query: 253 ALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCA 312
             C+++   E L V+  M++    PDV++ +T+I+GFC+ G ++ A ++  +MV  K  +
Sbjct: 433 GHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVE-KGVS 491

Query: 313 PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKE 372
           PDAVT++++I GL  + R+ EA + L Q M   G  P   TY  ++        + +A  
Sbjct: 492 PDAVTYSSLIQGLCEMRRLTEACD-LSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALH 550

Query: 373 VFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY-------- 424
           + + M+  G + D+ TY+++I+GL +  +  EAKR    +++  ++  +  Y        
Sbjct: 551 LHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKLIYEESVPSDVTYDTLIENCS 610

Query: 425 -------AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQ 477
                   A+IKG C  G +HEA      +V+    P    YNV+I G C+     +A+ 
Sbjct: 611 NIEFKSVVALIKGFCMKGLMHEADRVFESMVERNHKPGEAVYNVIIHGHCRGGNLPKAFN 670

Query: 478 ILREMRKNGLNPDAVTWRILDK 499
           + +EM  +G  P  VT   L K
Sbjct: 671 LYKEMIHSGFVPHTVTVITLIK 692



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 133/507 (26%), Positives = 246/507 (48%), Gaps = 29/507 (5%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C + R+ EA  L   M S+G  PN++SY  +I+G CR G M  A+++ +EM + G 
Sbjct: 256 IDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGF 315

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TY+ L+ G  +  +  +A V+  ++         +S +   +  L++S+C+   +
Sbjct: 316 TPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRN-----GVSPSVVTYTALINSMCKARNL 370

Query: 121 NEVFRIAEDMP-QGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           N      + M  +G   NE      +ID   R G  + A R++  M + G +PS+V+YN+
Sbjct: 371 NRAMEFFDQMRIRGLRPNER-TYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNA 429

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
            +HG C       A  +++E ++ G  P   +Y  ++ G C + +L++A ++ Q M+ K 
Sbjct: 430 FIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKG 489

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                   +  ++ LC ++  TE  ++   ML     PD  T  T+IN +C  G + +AL
Sbjct: 490 VSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKAL 549

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
            + ++M+   F  PDAVT++ +I GL    R +EA  LL++++ +    P  VTY+ ++ 
Sbjct: 550 HLHDEMIHKGFL-PDAVTYSVLINGLNKQARTREAKRLLFKLIYEESV-PSDVTYDTLIE 607

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
               +    E K V                  +I G C    + EA R ++ +V  ++  
Sbjct: 608 NCSNI----EFKSV----------------VALIKGFCMKGLMHEADRVFESMVERNHKP 647

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
              VY  +I G CR G + +A +   E++ SG  P+ V    +I    K  M  E  +++
Sbjct: 648 GEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLIKALFKEGMNEEMSEVI 707

Query: 480 REMRKNGLNPDAVTWRILDKLHGNRGN 506
            +  ++    +A   ++L +++   GN
Sbjct: 708 GDTLRSCRLNEAELAKVLVEINHKEGN 734



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 128/485 (26%), Positives = 238/485 (49%), Gaps = 9/485 (1%)

Query: 16  LFFDMKSRGHVPNVVS--YTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRG 73
           +F  +K   HV N  S  +  ++  Y     +D A    +  +  G +P  L+Y+ ++  
Sbjct: 127 IFQCLKDSYHVYNSSSAVFDLMVKSYSHLNMIDQAVNTINLAKSSGFMPGVLSYNSVLDA 186

Query: 74  VLRTR-DVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQ 132
           ++R+R  V+ +   +++   R +    +S N   +  L+   C  G + +      +M +
Sbjct: 187 IVRSRGSVKLSAEEVYREMIRSR----VSPNVYTYNILIRGFCSVGELQKGLGCFGEMER 242

Query: 133 GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMR 192
              +        +ID+ C+ GR   A  ++  M  +G+ P+L+SYN I++GLC+ G    
Sbjct: 243 NGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKE 302

Query: 193 AYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLR 252
           A+++LEE    G+ P E TY  L+ G C E +  +A  +   M+              + 
Sbjct: 303 AWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALIN 362

Query: 253 ALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCA 312
           ++C  +N    +     M     +P+  T  T+I+GF + G + EA ++LN+M    F +
Sbjct: 363 SMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGF-S 421

Query: 313 PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKE 372
           P  VT+   I G   + R++EAL ++ Q M ++G +P +V+Y+ ++ G  R   ++ A +
Sbjct: 422 PSVVTYNAFIHGHCVLERMEEALGVV-QEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQ 480

Query: 373 VFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLC 432
           +   M+  GV  D+ TY+ +I GLCE  +L EA     +++      D + Y  +I   C
Sbjct: 481 MKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYC 540

Query: 433 RSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAV 492
             G +++A+H   E++  G  P+ V Y+V+I+G  K +  REA ++L ++      P  V
Sbjct: 541 VEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKLIYEESVPSDV 600

Query: 493 TWRIL 497
           T+  L
Sbjct: 601 TYDTL 605



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 78/276 (28%), Positives = 125/276 (45%), Gaps = 27/276 (9%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC + R+ EA  L  +M   G  P+  +YTTLI+ YC  G+++ A  + DEM H G LP+
Sbjct: 504 LCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPD 563

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           ++TYSVL+ G+ +      A  L+FKL       E+   ++  +  L+++          
Sbjct: 564 AVTYSVLINGLNKQARTREAKRLLFKLI-----YEESVPSDVTYDTLIENCS-------- 610

Query: 124 FRIAEDMPQGKSVNEEF-ACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
                        N EF +   +I   C  G  H A RV   M +R   P    YN I+H
Sbjct: 611 -------------NIEFKSVVALIKGFCMKGLMHEADRVFESMVERNHKPGEAVYNVIIH 657

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           G C+ G   +A+ L +E I  G++P   T   L++ L  E   E+  +V+   L    ++
Sbjct: 658 GHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLIKALFKEGMNEEMSEVIGDTLRSCRLN 717

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPD 278
              +  + +       N   +LNVL  M +    P+
Sbjct: 718 EAELAKVLVEINHKEGNMEAVLNVLTDMAKDGLLPN 753


>gi|147771991|emb|CAN69054.1| hypothetical protein VITISV_022964 [Vitis vinifera]
          Length = 586

 Score =  223 bits (569), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 141/508 (27%), Positives = 250/508 (49%), Gaps = 44/508 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C L R+G A  +   +   GH PN+ ++ TLI G C  G++     +FD+M   G 
Sbjct: 110 INSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEGF 169

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +TY  L+ G+ +      A  L+     R  E+ +   +   + +++DSLC++  V
Sbjct: 170 QPNVVTYGTLINGLCKVGSTSAAIRLL-----RSMEQGNCQPDVVVYTSIIDSLCKDRQV 224

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            + F +  +M         F    +I +LC        + ++  M    + P++V ++++
Sbjct: 225 TQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTV 284

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           V  LCK G  M A+ +++  I+ G  P+  TY  L++G C  S++++A KV   M+ K  
Sbjct: 285 VDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKG- 343

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                               PDV++ +T+ING+CK+ RIE+A+ 
Sbjct: 344 ----------------------------------FAPDVVSYSTLINGYCKIQRIEKAMY 369

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +  +M   +   P+ VT++T++ GL +VGR+Q+A+ L ++ M  RG  P  V+Y  +L  
Sbjct: 370 LFEEMCRKEL-IPNTVTYSTLMHGLCHVGRLQDAIALFHE-MVTRGQIPDFVSYCILLDY 427

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L + RR++EA  +   + G  +  D   Y IVIDG+C + +L+ A+  + ++     +H 
Sbjct: 428 LCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAARDLFSNL-SSKGLHP 486

Query: 421 N-YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           N + Y  MI GLC+ G + EA     E+   G +PN   YN++  G  + +      Q+L
Sbjct: 487 NVWTYTIMINGLCQQGLLAEASKLFGEMKRKGYSPNGCTYNLITRGFLRNNETLRGIQLL 546

Query: 480 REMRKNGLNPDAVTWRILDKLHGNRGND 507
           +EM   G + D  T  +L ++  + G D
Sbjct: 547 QEMLARGFSADVSTSTVLVEMLSDDGLD 574



 Score =  217 bits (552), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 130/473 (27%), Positives = 238/473 (50%), Gaps = 7/473 (1%)

Query: 27  PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVL 86
           P++  +T L+    +         +  +M   G+ PN  T ++L+      + +  A  +
Sbjct: 66  PSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTLNILINSFCHLQRLGFAFSV 125

Query: 87  MFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMI 146
           + K+ +   +      N A F  L+  LC EG + EV  + + M            G +I
Sbjct: 126 LAKILKLGHQP-----NIATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLI 180

Query: 147 DSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL 206
           + LC+ G    A R++  M +    P +V Y SI+  LCK     +A+ L  E I  G  
Sbjct: 181 NGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGIS 240

Query: 207 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 266
           PS  TY  L+  LC   + +    +L  M++ K +    I +  + ALC      E  +V
Sbjct: 241 PSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDV 300

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
           +  M++   +P+V+T N +++G C    ++EA+KV + MV   F APD V+++T+I G  
Sbjct: 301 VDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGF-APDVVSYSTLINGYC 359

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
            + RI++A+  L++ M ++   P  VTY+ ++ GL  + R+++A  +F+ M+  G + D 
Sbjct: 360 KIQRIEKAM-YLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQIPDF 418

Query: 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE 446
            +Y I++D LC++ +LDEA      I   +   D  +Y  +I G+CR+G++  A      
Sbjct: 419 VSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAARDLFSN 478

Query: 447 LVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
           L   G+ PN+  Y ++I+G C+  +  EA ++  EM++ G +P+  T+ ++ +
Sbjct: 479 LSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKGYSPNGCTYNLITR 531



 Score =  154 bits (389), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 117/435 (26%), Positives = 200/435 (45%), Gaps = 35/435 (8%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   ++GE   LF  M   G  PNVV+Y TLI+G C+ G    A ++   M      P+
Sbjct: 148 LCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPD 207

Query: 64  SLTYSVLVRGVLRTRDVERA-------------------NVLMFKL-----WERMKEEED 99
            + Y+ ++  + + R V +A                   N L+  L     W+ +    +
Sbjct: 208 VVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLN 267

Query: 100 LSVNN------AAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSG 153
             VN+        F+ +VD+LC+EG V E   + + M +            ++D  C   
Sbjct: 268 EMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRS 327

Query: 154 RNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYK 213
               A +V   M  +G  P +VSY+++++G CK     +A  L EE  +   +P+  TY 
Sbjct: 328 EMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYS 387

Query: 214 VLVEGLCGESDLEKARKVLQFMLSKKDV-DRTRICNIYLRALCLIKNPTELLNVLVFMLQ 272
            L+ GLC    L+ A  +   M+++  + D    C I L  LC  +   E + +L  +  
Sbjct: 388 TLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYC-ILLDYLCKNRRLDEAIALLKAIEG 446

Query: 273 TQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQ 332
           +   PD+     VI+G C+ G +E A  + +++ + K   P+  T+T +I GL   G + 
Sbjct: 447 SNMDPDIQIYTIVIDGMCRAGELEAARDLFSNL-SSKGLHPNVWTYTIMINGLCQQGLLA 505

Query: 333 EALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIV 392
           EA + L+  M ++GYSP   TYN + RG  R        ++   ML  G  AD +T  ++
Sbjct: 506 EA-SKLFGEMKRKGYSPNGCTYNLITRGFLRNNETLRGIQLLQEMLARGFSADVSTSTVL 564

Query: 393 IDGLCESNQLDEAKR 407
           ++ L + + LD++ +
Sbjct: 565 VEMLSD-DGLDQSVK 578



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 93/331 (28%), Positives = 160/331 (48%), Gaps = 4/331 (1%)

Query: 172 PSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKV 231
           PS+  +  ++  + K         L  +   FG  P+ +T  +L+   C    L  A  V
Sbjct: 66  PSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTLNILINSFCHLQRLGFAFSV 125

Query: 232 LQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK 291
           L  +L           N  +R LC+     E+L++   M+    QP+V+T  T+ING CK
Sbjct: 126 LAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCK 185

Query: 292 MGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGI 351
           +G    A+++L  M  G  C PD V +T+II  L    ++ +A NL  +++ Q G SP I
Sbjct: 186 VGSTSAAIRLLRSMEQGN-CQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQ-GISPSI 243

Query: 352 VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDD 411
            TYN+++  L  L   +    + N M+   ++ +   ++ V+D LC+  ++ EA    D 
Sbjct: 244 FTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDM 303

Query: 412 IVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSM 471
           ++      +   Y A++ G C   ++ EAV     +V  G  P++V Y+ +I+G CK+  
Sbjct: 304 MIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQR 363

Query: 472 KREAYQILREMRKNGLNPDAVTWRILDKLHG 502
             +A  +  EM +  L P+ VT+  L  +HG
Sbjct: 364 IEKAMYLFEEMCRKELIPNTVTYSTL--MHG 392



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/342 (25%), Positives = 147/342 (42%), Gaps = 41/342 (11%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   +V EAH +   M  RG  PNVV+Y  L+ G+C   EMD A KVFD M   G 
Sbjct: 285 VDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGF 344

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ ++YS L+ G  + + +E+A      L+E M  +E L  N   ++ L+  LC  G +
Sbjct: 345 APDVVSYSTLINGYCKIQRIEKA----MYLFEEMCRKE-LIPNTVTYSTLMHGLCHVGRL 399

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +   +  +M     + +  +   ++D LC++ R   A  ++  +    + P +  Y  +
Sbjct: 400 QDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIV 459

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G+C+ G    A  L       G  P+  TY +++ GLC +  L +A K+   M  K  
Sbjct: 460 IDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKG- 518

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                               P+  T N +  GF +       ++
Sbjct: 519 ----------------------------------YSPNGCTYNLITRGFLRNNETLRGIQ 544

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVM 342
           +L +M+A  F A D  T T ++  L + G  Q    +L + +
Sbjct: 545 LLQEMLARGFSA-DVSTSTVLVEMLSDDGLDQSVKQILSEFL 585


>gi|356499327|ref|XP_003518493.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Glycine max]
          Length = 725

 Score =  223 bits (568), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 149/498 (29%), Positives = 244/498 (48%), Gaps = 12/498 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M  LC +S V  A  L  DM   G VPN V Y TLIH  C    +  A ++ ++M     
Sbjct: 212 MKALCMVSEVDSACSLLRDMAKHGCVPNSVIYQTLIHALCENNRVSEALQLLEDMFLMCC 271

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+  T++ ++ G+ R   +  A  L+ ++  R       S +   +  L+  LCR G V
Sbjct: 272 EPDVQTFNDVIHGLCRAGRIHEAAKLLDRMLLR-----GFSTDALTYGYLMHGLCRMGQV 326

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYV-MRKRGLTPSLVSYNS 179
           +E   +   +P   +V        +I     SGR   A  ++Y  M   G  P   ++N 
Sbjct: 327 DEARALLNKIPNPNTV----LYNTLISGYVASGRFEEAKDLLYNNMVIAGYEPDAYTFNI 382

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++ GL K G  + A +LL E +   + P+  TY +L+ G C +  LE+A +++  M +K 
Sbjct: 383 MIDGLVKKGYLVSALELLNEMVAKRFEPNVITYTILINGFCKQGRLEEAAEIVNSMSAKG 442

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
               T   N  + ALC   N  E L +   M    C+PD+ T N++ING CK  ++EEAL
Sbjct: 443 LSLNTVGYNCLICALCKDGNIEEALQLFGEMSGKGCKPDIYTFNSLINGLCKNHKMEEAL 502

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
            + +DM      A + VT+ T++   L    IQ+A  L+ +++  RG     +TYN +++
Sbjct: 503 SLYHDMFLEGVIA-NTVTYNTLVHAFLMRDSIQQAFKLVDEML-FRGCPLDNITYNGLIK 560

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
            L +   VE+   +F  MLG G+     +  I+I GLC + ++++A +F  D++      
Sbjct: 561 ALCKTGAVEKGLGLFEEMLGKGIFPTIISCNILISGLCRTGKVNDALKFLQDMIHRGLTP 620

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           D   Y ++I GLC+ G + EA +   +L   G+ P+ + YN +I   C   M  +A  +L
Sbjct: 621 DIVTYNSLINGLCKMGHVQEASNLFNKLQSEGIRPDAITYNTLISRHCHEGMFNDACLLL 680

Query: 480 REMRKNGLNPDAVTWRIL 497
            +   +G  P+ VTW IL
Sbjct: 681 YKGVDSGFIPNEVTWSIL 698



 Score =  210 bits (535), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 146/538 (27%), Positives = 253/538 (47%), Gaps = 100/538 (18%)

Query: 13  AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVR 72
           A  +F+DM SRG  P V ++  ++   C   E+D A  +  +M   G +PNS+ Y  L+ 
Sbjct: 189 APNVFYDMLSRGVSPTVYTFGVVMKALCMVSEVDSACSLLRDMAKHGCVPNSVIYQTLIH 248

Query: 73  GVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDM-- 130
                                                   +LC    V+E  ++ EDM  
Sbjct: 249 ----------------------------------------ALCENNRVSEALQLLEDMFL 268

Query: 131 ----PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK 186
               P  ++ N+      +I  LCR+GR H A++++  M  RG +   ++Y  ++HGLC+
Sbjct: 269 MCCEPDVQTFND------VIHGLCRAGRIHEAAKLLDRMLLRGFSTDALTYGYLMHGLCR 322

Query: 187 HGGCMRAYQLLEEGIQFGYLPSEHT--YKVLVEGLCGESDLEKARKVL--QFMLSKKDVD 242
            G    A  LL +      +P+ +T  Y  L+ G       E+A+ +L    +++  + D
Sbjct: 323 MGQVDEARALLNK------IPNPNTVLYNTLISGYVASGRFEEAKDLLYNNMVIAGYEPD 376

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
                NI +  L         L +L  M+  + +P+VIT   +INGFCK GR+EEA +++
Sbjct: 377 AYTF-NIMIDGLVKKGYLVSALELLNEMVAKRFEPNVITYTILINGFCKQGRLEEAAEIV 435

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
           N M A K  + + V +  +I  L   G I+EAL L  + M  +G  P I T+N+++ GL 
Sbjct: 436 NSMSA-KGLSLNTVGYNCLICALCKDGNIEEALQLFGE-MSGKGCKPDIYTFNSLINGLC 493

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
           +  ++EEA  +++ M   GV+A++ TY  ++      + + +A +  D++++     DN 
Sbjct: 494 KNHKMEEALSLYHDMFLEGVIANTVTYNTLVHAFLMRDSIQQAFKLVDEMLFRGCPLDNI 553

Query: 423 VYAAMIK-----------------------------------GLCRSGKIHEAVHFLYEL 447
            Y  +IK                                   GLCR+GK+++A+ FL ++
Sbjct: 554 TYNGLIKALCKTGAVEKGLGLFEEMLGKGIFPTIISCNILISGLCRTGKVNDALKFLQDM 613

Query: 448 VDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
           +  G+TP+IV YN +I+G CK+   +EA  +  +++  G+ PDA+T+  L   H + G
Sbjct: 614 IHRGLTPDIVTYNSLINGLCKMGHVQEASNLFNKLQSEGIRPDAITYNTLISRHCHEG 671



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 122/469 (26%), Positives = 215/469 (45%), Gaps = 17/469 (3%)

Query: 35  LIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERM 94
           LI      G+  V  K+  +M+  G+L     + ++++   +     +A  L+  +W   
Sbjct: 105 LIDKLGAVGDFKVIEKLLKQMKDEGLLFKESLFILIMKHYGKAGLPGQATRLLLDMWGVY 164

Query: 95  KEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGR 154
             +      N     LVD  C     N  +    DM         +  G ++ +LC    
Sbjct: 165 SCDPTFKSYNVVLDILVDGDCPRVAPNVFY----DMLSRGVSPTVYTFGVVMKALCMVSE 220

Query: 155 NHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKV 214
              A  ++  M K G  P+ V Y +++H LC++     A QLLE+       P   T+  
Sbjct: 221 VDSACSLLRDMAKHGCVPNSVIYQTLIHALCENNRVSEALQLLEDMFLMCCEPDVQTFND 280

Query: 215 LVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTE---LLNVLVFML 271
           ++ GLC    + +A K+L  ML +            +  LC +    E   LLN +    
Sbjct: 281 VIHGLCRAGRIHEAAKLLDRMLLRGFSTDALTYGYLMHGLCRMGQVDEARALLNKIP--- 337

Query: 272 QTQCQPDVITLNTVINGFCKMGRIEEALKVL-NDMVAGKFCAPDAVTFTTIIFGLLNVGR 330
                P+ +  NT+I+G+   GR EEA  +L N+MV   +  PDA TF  +I GL+  G 
Sbjct: 338 ----NPNTVLYNTLISGYVASGRFEEAKDLLYNNMVIAGY-EPDAYTFNIMIDGLVKKGY 392

Query: 331 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYA 390
           +  AL LL +++ +R + P ++TY  ++ G  +  R+EEA E+ N M   G+  ++  Y 
Sbjct: 393 LVSALELLNEMVAKR-FEPNVITYTILINGFCKQGRLEEAAEIVNSMSAKGLSLNTVGYN 451

Query: 391 IVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 450
            +I  LC+   ++EA + + ++       D Y + ++I GLC++ K+ EA+   +++   
Sbjct: 452 CLICALCKDGNIEEALQLFGEMSGKGCKPDIYTFNSLINGLCKNHKMEEALSLYHDMFLE 511

Query: 451 GVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
           GV  N V YN ++         ++A++++ EM   G   D +T+  L K
Sbjct: 512 GVIANTVTYNTLVHAFLMRDSIQQAFKLVDEMLFRGCPLDNITYNGLIK 560



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 92/351 (26%), Positives = 173/351 (49%), Gaps = 8/351 (2%)

Query: 9   RVGEAHKLFFD-MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTY 67
           R  EA  L ++ M   G+ P+  ++  +I G  + G +  A ++ +EM      PN +TY
Sbjct: 356 RFEEAKDLLYNNMVIAGYEPDAYTFNIMIDGLVKKGYLVSALELLNEMVAKRFEPNVITY 415

Query: 68  SVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIA 127
           ++L+ G  +   +E A  ++  +       + LS+N   +  L+ +LC++G + E  ++ 
Sbjct: 416 TILINGFCKQGRLEEAAEIVNSM-----SAKGLSLNTVGYNCLICALCKDGNIEEALQLF 470

Query: 128 EDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKH 187
            +M       + +    +I+ LC++ +   A  + + M   G+  + V+YN++VH     
Sbjct: 471 GEMSGKGCKPDIYTFNSLINGLCKNHKMEEALSLYHDMFLEGVIANTVTYNTLVHAFLMR 530

Query: 188 GGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC 247
               +A++L++E +  G      TY  L++ LC    +EK   + + ML K        C
Sbjct: 531 DSIQQAFKLVDEMLFRGCPLDNITYNGLIKALCKTGAVEKGLGLFEEMLGKGIFPTIISC 590

Query: 248 NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA 307
           NI +  LC      + L  L  M+     PD++T N++ING CKMG ++EA  + N + +
Sbjct: 591 NILISGLCRTGKVNDALKFLQDMIHRGLTPDIVTYNSLINGLCKMGHVQEASNLFNKLQS 650

Query: 308 GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
                PDA+T+ T+I    + G   +A  LLY+ +   G+ P  VT++ ++
Sbjct: 651 EGI-RPDAITYNTLISRHCHEGMFNDACLLLYKGV-DSGFIPNEVTWSILI 699



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 43/76 (56%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC +  V EA  LF  ++S G  P+ ++Y TLI  +C  G  + A  +  +    G 
Sbjct: 629 INGLCKMGHVQEASNLFNKLQSEGIRPDAITYNTLISRHCHEGMFNDACLLLYKGVDSGF 688

Query: 61  LPNSLTYSVLVRGVLR 76
           +PN +T+S+L+  +++
Sbjct: 689 IPNEVTWSILINYIVK 704


>gi|354726093|emb|CCD31439.1| RNA processing factor 3 [Arabidopsis thaliana]
          Length = 629

 Score =  223 bits (568), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 136/494 (27%), Positives = 248/494 (50%), Gaps = 42/494 (8%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C  S++  A  +   M   G+ P++V+ ++L++GYC +  +  A  + D+M   G  P+
Sbjct: 125 FCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPD 184

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           ++T++ L+ G+        A  L+ ++ +R   + DL      +  +V+ LC+ G ++  
Sbjct: 185 TVTFNTLIHGLFLHNKASEAVALVDQMVQR-GCQPDL----VTYGAVVNGLCKRGDIDLA 239

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             + + M +GK   +      +ID LC+      A  +   M  +G+ P + +YNS++  
Sbjct: 240 LSLLKKMEKGKIEADVVIYNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISC 299

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LC +G    A +LL   I+    P+  T+  L++    E  L +A K+   M+ K+ +D 
Sbjct: 300 LCNYGRWSDASRLLSNMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMI-KRSID- 357

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                                            PD+ T +++INGFC   R++EA K + 
Sbjct: 358 ---------------------------------PDIFTYSSLINGFCMHDRLDEA-KHMF 383

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           +++  K C P+ VT+ T+I G     R++E + L ++ M QRG     VTYN +++GLF+
Sbjct: 384 ELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMEL-FREMSQRGLVGNTVTYNTLIQGLFQ 442

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
               + A+++F  M+  GV  D  TY+I++DGLC+  +L++A   ++ +       D Y 
Sbjct: 443 AGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYT 502

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y  MI+G+C++GK+ +       L   GV PN++ Y  +I G C+  +K EA  + REM+
Sbjct: 503 YNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMK 562

Query: 484 KNGLNPDAVTWRIL 497
           ++G  PD+  +  L
Sbjct: 563 EDGTLPDSGCYNTL 576



 Score =  205 bits (522), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 134/501 (26%), Positives = 239/501 (47%), Gaps = 43/501 (8%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C   R+ +A  L   M   G+ P+ V++ TLIHG     +   A  + D+M   G  P+ 
Sbjct: 161 CHSKRISDAVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALVDQMVQRGCQPDL 220

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           +TY  +V G+ +  D++ A  L+ K+ E+ K E D+ + N     ++D LC+  ++++ F
Sbjct: 221 VTYGAVVNGLCKRGDIDLALSLLKKM-EKGKIEADVVIYN----TIIDGLCKYKHIDDAF 275

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
            +   M       + F    +I  LC  GR   ASR++  M +R + P++V++++++   
Sbjct: 276 ALFNKMETKGIRPDVFTYNSLISCLCNYGRWSDASRLLSNMIERKINPNVVTFSALIDAF 335

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
            K G  + A +L +E I+    P   TY  L+ G C    L++A+ + +           
Sbjct: 336 VKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFEL---------- 385

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
                                    M+   C P+V+T NT+I GFCK  R+EE +++  +
Sbjct: 386 -------------------------MISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFRE 420

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
           M + +    + VT+ T+I GL   G    A  + ++ M   G  P I+TY+ +L GL + 
Sbjct: 421 M-SQRGLVGNTVTYNTLIQGLFQAGDCDMAQKI-FKKMVSDGVPPDIITYSILLDGLCKY 478

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY 424
            ++E+A  VF  +    +  D  TY I+I+G+C++ ++++    +  +       +  +Y
Sbjct: 479 GKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIY 538

Query: 425 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484
             MI G CR G   EA     E+ + G  P+  CYN +I    +   K  + ++++EMR 
Sbjct: 539 TTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARLRDGDKAASAELIKEMRS 598

Query: 485 NGLNPDAVTWR-ILDKLHGNR 504
            G   DA T   +++ LH  R
Sbjct: 599 CGFVGDASTISMVINMLHDGR 619



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 118/454 (25%), Positives = 222/454 (48%), Gaps = 7/454 (1%)

Query: 44  EMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVN 103
           ++D A  +F EM     LP+ + ++ L+  + + +  +    L+  L ERM+    +S +
Sbjct: 60  KLDDAIGLFGEMVQSRPLPSIVEFNKLLSAIAKMKKFD----LVISLGERMQNLR-ISYD 114

Query: 104 NAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVY 163
             ++  L++  CR   +     +   M +     +      +++  C S R   A  +V 
Sbjct: 115 LYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVD 174

Query: 164 VMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGES 223
            M + G  P  V++N+++HGL  H     A  L+++ +Q G  P   TY  +V GLC   
Sbjct: 175 QMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRG 234

Query: 224 DLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLN 283
           D++ A  +L+ M   K      I N  +  LC  K+  +   +   M     +PDV T N
Sbjct: 235 DIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYN 294

Query: 284 TVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMP 343
           ++I+  C  GR  +A ++L++M+  K   P+ VTF+ +I   +  G++ EA   LY  M 
Sbjct: 295 SLISCLCNYGRWSDASRLLSNMIERKI-NPNVVTFSALIDAFVKEGKLVEA-EKLYDEMI 352

Query: 344 QRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLD 403
           +R   P I TY++++ G     R++EAK +F  M+      +  TY  +I G C++ +++
Sbjct: 353 KRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVE 412

Query: 404 EAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463
           E    + ++     + +   Y  +I+GL ++G    A     ++V  GV P+I+ Y++++
Sbjct: 413 EGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILL 472

Query: 464 DGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           DG CK     +A  +   ++K+ + PD  T+ I+
Sbjct: 473 DGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIM 506



 Score =  177 bits (450), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 115/490 (23%), Positives = 245/490 (50%), Gaps = 9/490 (1%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           ++ +A  LF +M     +P++V +  L+    +  + D+   + + M++  +  +  +Y+
Sbjct: 60  KLDDAIGLFGEMVQSRPLPSIVEFNKLLSAIAKMKKFDLVISLGERMQNLRISYDLYSYN 119

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
           +L+    R   +  A  ++ K+  ++  E D+       ++L++  C    +++   + +
Sbjct: 120 ILINCFCRRSQLPLALAVLGKMM-KLGYEPDI----VTLSSLLNGYCHSKRISDAVALVD 174

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
            M +     +      +I  L    +   A  +V  M +RG  P LV+Y ++V+GLCK G
Sbjct: 175 QMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRG 234

Query: 189 GCMRAYQLLEEGIQFGYLPSEHT-YKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC 247
               A  LL++ ++ G + ++   Y  +++GLC    ++ A  +   M +K         
Sbjct: 235 DIDLALSLLKK-MEKGKIEADVVIYNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTY 293

Query: 248 NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA 307
           N  +  LC     ++   +L  M++ +  P+V+T + +I+ F K G++ EA K+ ++M+ 
Sbjct: 294 NSLISCLCNYGRWSDASRLLSNMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIK 353

Query: 308 GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRV 367
            +   PD  T++++I G     R+ EA ++ +++M  +   P +VTYN +++G  + +RV
Sbjct: 354 -RSIDPDIFTYSSLINGFCMHDRLDEAKHM-FELMISKDCFPNVVTYNTLIKGFCKAKRV 411

Query: 368 EEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAM 427
           EE  E+F  M   G+V ++ TY  +I GL ++   D A++ +  +V      D   Y+ +
Sbjct: 412 EEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSIL 471

Query: 428 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
           + GLC+ GK+ +A+     L  S + P+I  YN++I+G CK     + + +   +   G+
Sbjct: 472 LDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGV 531

Query: 488 NPDAVTWRIL 497
            P+ + +  +
Sbjct: 532 KPNVIIYTTM 541



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 105/404 (25%), Positives = 192/404 (47%), Gaps = 11/404 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC    +  A  L   M+      +VV Y T+I G C+   +D A+ +F++M   G+ P+
Sbjct: 230 LCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHIDDAFALFNKMETKGIRPD 289

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             TY+ L+  +        A+ L+  + ER      ++ N   F+ L+D+  +EG + E 
Sbjct: 290 VFTYNSLISCLCNYGRWSDASRLLSNMIER-----KINPNVVTFSALIDAFVKEGKLVEA 344

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            ++ ++M +     + F    +I+  C   R   A  +  +M  +   P++V+YN+++ G
Sbjct: 345 EKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKG 404

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK        +L  E  Q G + +  TY  L++GL    D + A+K+ + M+S      
Sbjct: 405 FCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPD 464

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               +I L  LC      + L V  ++ +++ +PD+ T N +I G CK G++E+   +  
Sbjct: 465 IITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFC 524

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            + + K   P+ + +TT+I G    G  +EA + L++ M + G  P    YN ++R   R
Sbjct: 525 SL-SLKGVKPNVIIYTTMISGFCRKGLKEEA-DALFREMKEDGTLPDSGCYNTLIRARLR 582

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVI----DGLCESNQLD 403
                 + E+   M   G V D++T ++VI    DG  E + L+
Sbjct: 583 DGDKAASAELIKEMRSCGFVGDASTISMVINMLHDGRLEKSYLE 626



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 46/79 (58%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ +C   +V +   LF  +  +G  PNV+ YTT+I G+CR G  + A  +F EM+  G 
Sbjct: 507 IEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGT 566

Query: 61  LPNSLTYSVLVRGVLRTRD 79
           LP+S  Y+ L+R  LR  D
Sbjct: 567 LPDSGCYNTLIRARLRDGD 585



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 66/148 (44%), Gaps = 14/148 (9%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   ++ +A  +F  ++     P++ +Y  +I G C+ G+++  + +F  +   GV
Sbjct: 472 LDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGV 531

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN + Y+ ++ G  R    E A+     L+  MKE+            L DS C    +
Sbjct: 532 KPNVIIYTTMISGFCRKGLKEEADA----LFREMKED----------GTLPDSGCYNTLI 577

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDS 148
               R  +     + + E  +CG + D+
Sbjct: 578 RARLRDGDKAASAELIKEMRSCGFVGDA 605


>gi|359488009|ref|XP_003633686.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 579

 Score =  223 bits (568), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 145/511 (28%), Positives = 250/511 (48%), Gaps = 42/511 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C L+RVG A  +   +   GH P+  ++TTLI G    G++  A  +FD+M   G 
Sbjct: 103 INSFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGIYVEGKIGEALHLFDKMIGEGF 162

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TY  L+ G+ +  +   A  L+  + ++     +   N  A+  ++DSLC++  V
Sbjct: 163 RPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQK-----NCQPNVFAYNTIIDSLCKDRQV 217

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E F +  +M       + F    +I +LC        + ++  M    + P +VS+N++
Sbjct: 218 TEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTV 277

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           V  LCK G    A+ ++++ IQ G  P+  TY  L++G C  S++++A KV   M+ K  
Sbjct: 278 VDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKG- 336

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                             C P+VI+ NT+ING+CK+ RI++A+ 
Sbjct: 337 ----------------------------------CMPNVISYNTLINGYCKIQRIDKAMY 362

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +  +M   +   PD VT++T+I GL +V R+Q+A+ L ++ M      P +VTY  +L  
Sbjct: 363 LFGEMCRQEL-IPDTVTYSTLIHGLCHVERLQDAIALFHE-MVACSQIPNLVTYRILLDY 420

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L + R + EA  +   + G  +  D     I IDG+C + +L+ A+  + ++       D
Sbjct: 421 LCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQPD 480

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
            + Y+ MI GLCR G + EA     E+ ++G T N   YN +  G  + +    A Q+L+
Sbjct: 481 VWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTITRGFLRNNETSRAIQLLQ 540

Query: 481 EMRKNGLNPDAVTWRILDKLHGNRGNDFGLR 511
           EM   G + DA T  +  K+  + G D  L+
Sbjct: 541 EMVARGFSADASTMTLFVKMLSDDGLDQSLK 571



 Score =  174 bits (442), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 118/483 (24%), Positives = 214/483 (44%), Gaps = 77/483 (15%)

Query: 15  KLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGV 74
            L   M S G  PN+ +   LI+ +C    +  A+ V  ++   G  P++ T++ L+RG+
Sbjct: 82  SLSHQMDSFGIPPNIYTLHILINSFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGI 141

Query: 75  LRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGK 134
                +  A                         +L D +  EG+  +V           
Sbjct: 142 YVEGKIGEA------------------------LHLFDKMIGEGFRPDVVTY-------- 169

Query: 135 SVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAY 194
                   G +I+ LC+ G    A R++  M ++   P++ +YN+I+  LCK      A+
Sbjct: 170 --------GTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAF 221

Query: 195 QLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRAL 254
            L  E +  G  P   TY  L+  LC                                 L
Sbjct: 222 NLFSEMVTKGISPDIFTYNSLIHALCN--------------------------------L 249

Query: 255 CLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPD 314
           C  K+   LLN    M+ ++  PDV++ NTV++  CK G++ EA  V++ M+  +   P+
Sbjct: 250 CEWKHVATLLNE---MVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQ-RGVEPN 305

Query: 315 AVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVF 374
            VT+T ++ G   +  + EA+ + +  M  +G  P +++YN ++ G  +++R+++A  +F
Sbjct: 306 VVTYTALMDGHCLLSEMDEAVKV-FDTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLF 364

Query: 375 NCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRS 434
             M    ++ D+ TY+ +I GLC   +L +A   + ++V  S I +   Y  ++  LC++
Sbjct: 365 GEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILLDYLCKN 424

Query: 435 GKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
             + EA+  L  +  S + P+I   N+ IDG C+      A  +   +   GL PD  T+
Sbjct: 425 RYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVWTY 484

Query: 495 RIL 497
            I+
Sbjct: 485 SIM 487



 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 103/384 (26%), Positives = 189/384 (49%), Gaps = 2/384 (0%)

Query: 107 FANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMR 166
           F  L+ S+ +  + + +  ++  M         +    +I+S C   R   A  V+  + 
Sbjct: 64  FNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHILINSFCHLNRVGFAFSVLAKIL 123

Query: 167 KRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLE 226
           K G  P   ++ +++ G+   G    A  L ++ I  G+ P   TY  L+ GLC   +  
Sbjct: 124 KLGHQPDTATFTTLIRGIYVEGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTS 183

Query: 227 KARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVI 286
            A ++L  M+ K         N  + +LC  +  TE  N+   M+     PD+ T N++I
Sbjct: 184 AAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLI 243

Query: 287 NGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
           +  C +   +    +LN+MV  K   PD V+F T++  L   G++ EA +++ + M QRG
Sbjct: 244 HALCNLCEWKHVATLLNEMVDSKI-MPDVVSFNTVVDALCKEGKVTEAHDVVDK-MIQRG 301

Query: 347 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
             P +VTY A++ G   L  ++EA +VF+ M+  G + +  +Y  +I+G C+  ++D+A 
Sbjct: 302 VEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAM 361

Query: 407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466
             + ++     I D   Y+ +I GLC   ++ +A+   +E+V     PN+V Y +++D  
Sbjct: 362 YLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILLDYL 421

Query: 467 CKLSMKREAYQILREMRKNGLNPD 490
           CK     EA  +L+ +  + L+PD
Sbjct: 422 CKNRYLAEAMALLKAIEGSNLDPD 445



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/263 (29%), Positives = 132/263 (50%), Gaps = 2/263 (0%)

Query: 235 MLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGR 294
           ML  +    T   N  L ++  +K+ + LL++   M      P++ TL+ +IN FC + R
Sbjct: 52  MLRMQPPPSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHILINSFCHLNR 111

Query: 295 IEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTY 354
           +  A  VL  ++      PD  TFTT+I G+   G+I EAL+L +  M   G+ P +VTY
Sbjct: 112 VGFAFSVLAKILKLGH-QPDTATFTTLIRGIYVEGKIGEALHL-FDKMIGEGFRPDVVTY 169

Query: 355 NAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVW 414
             ++ GL ++     A  +   M+      +   Y  +ID LC+  Q+ EA   + ++V 
Sbjct: 170 GTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVT 229

Query: 415 PSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKRE 474
                D + Y ++I  LC   +       L E+VDS + P++V +N V+D  CK     E
Sbjct: 230 KGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTE 289

Query: 475 AYQILREMRKNGLNPDAVTWRIL 497
           A+ ++ +M + G+ P+ VT+  L
Sbjct: 290 AHDVVDKMIQRGVEPNVVTYTAL 312



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 86/340 (25%), Positives = 146/340 (42%), Gaps = 41/340 (12%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   +V EAH +   M  RG  PNVV+YT L+ G+C   EMD A KVFD M   G 
Sbjct: 278 VDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGC 337

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +PN ++Y+ L+ G  + + +++A   M+   E  ++E  L  +   ++ L+  LC    +
Sbjct: 338 MPNVISYNTLINGYCKIQRIDKA---MYLFGEMCRQE--LIPDTVTYSTLIHGLCHVERL 392

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +   +  +M     +        ++D LC++     A  ++  +    L P +   N  
Sbjct: 393 QDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIA 452

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G+C+ G    A  L       G  P   TY +++ GLC    L++A K+       ++
Sbjct: 453 IDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLF------RE 506

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           +D                             +  C  +    NT+  GF +      A++
Sbjct: 507 MD-----------------------------ENGCTLNGCIYNTITRGFLRNNETSRAIQ 537

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQ 340
           +L +MVA  F A DA T T  +  L + G  Q    +L +
Sbjct: 538 LLQEMVARGFSA-DASTMTLFVKMLSDDGLDQSLKQILRE 576


>gi|359474464|ref|XP_003631475.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Vitis vinifera]
 gi|297742067|emb|CBI33854.3| unnamed protein product [Vitis vinifera]
          Length = 767

 Score =  223 bits (568), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 144/501 (28%), Positives = 245/501 (48%), Gaps = 21/501 (4%)

Query: 16  LFFDMKSRGHVPNVVSYTTLIHGYCRT--GEMDV----AYKVFDEMRHCGVLPNSLTYSV 69
           LF +MKS G  PNV +YT +++ YC+   GE D+    A ++ +EM   G  P  +TYS 
Sbjct: 236 LFEEMKSTGPPPNVFTYTIMMNFYCKGNFGEADIDTRQATEILEEMERNGESPTVVTYST 295

Query: 70  LVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAED 129
            + G+ R   VE A   +  L        +  VN   +  ++  LC++G ++E  ++ E+
Sbjct: 296 YIYGLCRVGYVESALDFVRSLIS-----ANGLVNVYCYNAIIHGLCKKGELDEALKVLEE 350

Query: 130 MPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG 189
           M       + +    +I   C+ G       ++  M+   + PSLVSY+S+ HGLCK   
Sbjct: 351 MKSCGISPDVYTYSILIHGFCKQGDVEKGLYLIEEMKYSNMEPSLVSYSSLFHGLCKKRL 410

Query: 190 CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNI 249
              +  +  +    GY   +  Y +L++G C + DL+ A K+++ M+             
Sbjct: 411 SDISLDIFRDLGAAGYKYDQTAYSILIKGFCMQGDLDSAHKLMEEMVRNNLAPDPSNFES 470

Query: 250 YLRALC---LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM- 305
            +   C   L  N  E  N+   ML+    P + T N +I+  C+ GR+EEAL ++N+M 
Sbjct: 471 LVHGFCKMGLWVNALEFFNM---MLEGGILPSIATCNVIIDAHCREGRVEEALNLMNEMQ 527

Query: 306 VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLR 365
             G F  P+  T+  +I  L    + + AL L + +M +R   P +V Y+ ++ G  +  
Sbjct: 528 TQGIF--PNLFTYNAVINRLCKERKSERALEL-FPLMLKRNVLPSVVVYSTLIDGFAKQS 584

Query: 366 RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYA 425
             ++A  ++  ML IGV  D   Y I+I+ LC  +++ EA   +  +       D   Y 
Sbjct: 585 NSQKALMLYARMLKIGVTPDMVAYTILINILCHRSRMCEAYNLFKKMTENGMTPDKISYT 644

Query: 426 AMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN 485
           ++I G CR G + +A     E++  G  P +V Y  ++DG CK++    A  ++ EM++ 
Sbjct: 645 SVIAGFCRIGDMRKAWALFNEMLQRGHLPTVVTYTSLVDGYCKMNRIDIADMLIDEMKRK 704

Query: 486 GLNPDAVTWRILDKLHGNRGN 506
           G+ PD VT+ +L   H  RGN
Sbjct: 705 GITPDVVTYNVLIAAHRRRGN 725



 Score =  194 bits (494), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 128/456 (28%), Positives = 221/456 (48%), Gaps = 7/456 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC +  V  A      + S   + NV  Y  +IHG C+ GE+D A KV +EM+ CG+ P+
Sbjct: 300 LCRVGYVESALDFVRSLISANGLVNVYCYNAIIHGLCKKGELDEALKVLEEMKSCGISPD 359

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             TYS+L+ G  +  DVE+       L E MK   ++  +  ++++L   LC++   +  
Sbjct: 360 VYTYSILIHGFCKQGDVEKG----LYLIEEMK-YSNMEPSLVSYSSLFHGLCKKRLSDIS 414

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             I  D+       ++ A   +I   C  G    A +++  M +  L P   ++ S+VHG
Sbjct: 415 LDIFRDLGAAGYKYDQTAYSILIKGFCMQGDLDSAHKLMEEMVRNNLAPDPSNFESLVHG 474

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK G  + A +     ++ G LPS  T  V+++  C E  +E+A  ++  M ++     
Sbjct: 475 FCKMGLWVNALEFFNMMLEGGILPSIATCNVIIDAHCREGRVEEALNLMNEMQTQGIFPN 534

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               N  +  LC  +     L +   ML+    P V+  +T+I+GF K    ++AL +  
Sbjct: 535 LFTYNAVINRLCKERKSERALELFPLMLKRNVLPSVVVYSTLIDGFAKQSNSQKALMLYA 594

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            M+      PD V +T +I  L +  R+ EA N L++ M + G +P  ++Y +V+ G  R
Sbjct: 595 RMLKIG-VTPDMVAYTILINILCHRSRMCEAYN-LFKKMTENGMTPDKISYTSVIAGFCR 652

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
           +  + +A  +FN ML  G +    TY  ++DG C+ N++D A    D++       D   
Sbjct: 653 IGDMRKAWALFNEMLQRGHLPTVVTYTSLVDGYCKMNRIDIADMLIDEMKRKGITPDVVT 712

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCY 459
           Y  +I    R G + +A+  L E+ ++GV P+ + Y
Sbjct: 713 YNVLIAAHRRRGNLDKALEMLNEMKENGVLPDHMTY 748



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 101/449 (22%), Positives = 185/449 (41%), Gaps = 105/449 (23%)

Query: 164 VMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGI---------QFGYLP------- 207
            M+K G + S+ ++ ++V+ L   G  M  Y LL + +          F   P       
Sbjct: 114 TMKKYGFSRSIDAFRTVVNVLALAGMHMEVYALLRDIVCYYNKVNLDAFELFPILLESPK 173

Query: 208 ----SEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD--VDRTRICNIYLRALCLIK-NP 260
               S   + +L++     S LE A  V  F+ +KK      TR CN  L+  CL + N 
Sbjct: 174 DAARSVIVFDLLIKVFAANSMLENAVDV--FLQAKKTGLELSTRSCNFLLK--CLAEANR 229

Query: 261 TELL--------------NVLVF--MLQTQCQ--------------------------PD 278
            E L              NV  +  M+   C+                          P 
Sbjct: 230 REFLRSLFEEMKSTGPPPNVFTYTIMMNFYCKGNFGEADIDTRQATEILEEMERNGESPT 289

Query: 279 VITLNTVINGFCKMGRIEEALKVLNDMVAGK-----FC---------------------- 311
           V+T +T I G C++G +E AL  +  +++       +C                      
Sbjct: 290 VVTYSTYIYGLCRVGYVESALDFVRSLISANGLVNVYCYNAIIHGLCKKGELDEALKVLE 349

Query: 312 -------APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
                  +PD  T++ +I G    G +++ L L+ + M      P +V+Y+++  GL + 
Sbjct: 350 EMKSCGISPDVYTYSILIHGFCKQGDVEKGLYLIEE-MKYSNMEPSLVSYSSLFHGLCKK 408

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY 424
           R  + + ++F  +   G   D T Y+I+I G C    LD A +  +++V  +   D   +
Sbjct: 409 RLSDISLDIFRDLGAAGYKYDQTAYSILIKGFCMQGDLDSAHKLMEEMVRNNLAPDPSNF 468

Query: 425 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484
            +++ G C+ G    A+ F   +++ G+ P+I   NV+ID  C+     EA  ++ EM+ 
Sbjct: 469 ESLVHGFCKMGLWVNALEFFNMMLEGGILPSIATCNVIIDAHCREGRVEEALNLMNEMQT 528

Query: 485 NGLNPDAVTWR-ILDKLHGNRGNDFGLRI 512
            G+ P+  T+  ++++L   R ++  L +
Sbjct: 529 QGIFPNLFTYNAVINRLCKERKSERALEL 557



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 116/235 (49%), Gaps = 5/235 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C   RV EA  L  +M+++G  PN+ +Y  +I+  C+  + + A ++F  M    V
Sbjct: 507 IDAHCREGRVEEALNLMNEMQTQGIFPNLFTYNAVINRLCKERKSERALELFPLMLKRNV 566

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           LP+ + YS L+ G  +  + ++A      L+ RM  +  ++ +  A+  L++ LC    +
Sbjct: 567 LPSVVVYSTLIDGFAKQSNSQKA----LMLYARML-KIGVTPDMVAYTILINILCHRSRM 621

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E + + + M +     ++ +   +I   CR G    A  +   M +RG  P++V+Y S+
Sbjct: 622 CEAYNLFKKMTENGMTPDKISYTSVIAGFCRIGDMRKAWALFNEMLQRGHLPTVVTYTSL 681

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM 235
           V G CK      A  L++E  + G  P   TY VL+       +L+KA ++L  M
Sbjct: 682 VDGYCKMNRIDIADMLIDEMKRKGITPDVVTYNVLIAAHRRRGNLDKALEMLNEM 736



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 44/70 (62%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C ++R+  A  L  +MK +G  P+VV+Y  LI  + R G +D A ++ +EM+  GV
Sbjct: 682 VDGYCKMNRIDIADMLIDEMKRKGITPDVVTYNVLIAAHRRRGNLDKALEMLNEMKENGV 741

Query: 61  LPNSLTYSVL 70
           LP+ +TY +L
Sbjct: 742 LPDHMTYMML 751


>gi|225451352|ref|XP_002274891.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 577

 Score =  223 bits (568), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 142/494 (28%), Positives = 245/494 (49%), Gaps = 9/494 (1%)

Query: 15  KLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGV 74
            L   M S G  PN+ +   LI+ +C    +  A+ V  ++   G  PN  T++ L+RG+
Sbjct: 80  SLSHQMDSFGIPPNIYTLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGL 139

Query: 75  LRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGK 134
                VE     +  L+++M  E     N   +  L++ LC+ G  +   R+   M QG 
Sbjct: 140 C----VEGKIGEVLHLFDKMIGE-GFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGN 194

Query: 135 SVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAY 194
              +      +IDSLC+  +   A  +   M  +G++PS+ +YNS++H LC         
Sbjct: 195 CQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVT 254

Query: 195 QLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRAL 254
            LL E +    +P+   +  +V+ LC E  + +A  V+  M+ +         N  +   
Sbjct: 255 ALLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGH 314

Query: 255 CLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPD 314
           CL     E + V   M+     PDV++ +T+ING+CK+ RIE+A+ +  +M   +   P+
Sbjct: 315 CLRSEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKEL-IPN 373

Query: 315 AVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVF 374
            VT++T++ GL +VGR+Q+A+ L ++ M  RG  P  V+Y  +L  L + RR++EA  + 
Sbjct: 374 TVTYSTLMHGLCHVGRLQDAIALFHE-MVTRGQIPDFVSYCILLDYLCKNRRLDEAIALL 432

Query: 375 NCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN-YVYAAMIKGLCR 433
             + G  +  D   Y IVIDG+C + +L+ A+  + ++     +H N + Y  MI GLC+
Sbjct: 433 KAIEGSNMDPDIQIYTIVIDGMCRAGELEAARDLFSNL-SSKGLHPNVWTYTIMINGLCQ 491

Query: 434 SGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVT 493
            G + EA     E+   G +PN   YN++  G  + +      Q+L+EM   G + D  T
Sbjct: 492 QGLLAEASKLFGEMKRKGYSPNGCTYNLITRGFLRNNETLRGIQLLQEMLARGFSADVST 551

Query: 494 WRILDKLHGNRGND 507
             +L ++  + G D
Sbjct: 552 STVLVEMLSDDGLD 565



 Score =  217 bits (552), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 130/473 (27%), Positives = 238/473 (50%), Gaps = 7/473 (1%)

Query: 27  PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVL 86
           P++  +T L+    +         +  +M   G+ PN  T ++L+      + +  A  +
Sbjct: 57  PSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTLNILINSFCHLQRLGFAFSV 116

Query: 87  MFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMI 146
           + K+ +   +      N A F  L+  LC EG + EV  + + M            G +I
Sbjct: 117 LAKILKLGHQP-----NIATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLI 171

Query: 147 DSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL 206
           + LC+ G    A R++  M +    P +V Y SI+  LCK     +A+ L  E I  G  
Sbjct: 172 NGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGIS 231

Query: 207 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 266
           PS  TY  L+  LC   + +    +L  M++ K +    I +  + ALC      E  +V
Sbjct: 232 PSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDV 291

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
           +  M++   +P+V+T N +++G C    ++EA+KV + MV   F APD V+++T+I G  
Sbjct: 292 VDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGF-APDVVSYSTLINGYC 350

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
            + RI++A+  L++ M ++   P  VTY+ ++ GL  + R+++A  +F+ M+  G + D 
Sbjct: 351 KIQRIEKAM-YLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQIPDF 409

Query: 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE 446
            +Y I++D LC++ +LDEA      I   +   D  +Y  +I G+CR+G++  A      
Sbjct: 410 VSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAARDLFSN 469

Query: 447 LVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
           L   G+ PN+  Y ++I+G C+  +  EA ++  EM++ G +P+  T+ ++ +
Sbjct: 470 LSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKGYSPNGCTYNLITR 522



 Score =  154 bits (389), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 117/435 (26%), Positives = 200/435 (45%), Gaps = 35/435 (8%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   ++GE   LF  M   G  PNVV+Y TLI+G C+ G    A ++   M      P+
Sbjct: 139 LCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPD 198

Query: 64  SLTYSVLVRGVLRTRDVERA-------------------NVLMFKL-----WERMKEEED 99
            + Y+ ++  + + R V +A                   N L+  L     W+ +    +
Sbjct: 199 VVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLN 258

Query: 100 LSVNN------AAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSG 153
             VN+        F+ +VD+LC+EG V E   + + M +            ++D  C   
Sbjct: 259 EMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRS 318

Query: 154 RNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYK 213
               A +V   M  +G  P +VSY+++++G CK     +A  L EE  +   +P+  TY 
Sbjct: 319 EMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYS 378

Query: 214 VLVEGLCGESDLEKARKVLQFMLSKKDV-DRTRICNIYLRALCLIKNPTELLNVLVFMLQ 272
            L+ GLC    L+ A  +   M+++  + D    C I L  LC  +   E + +L  +  
Sbjct: 379 TLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYC-ILLDYLCKNRRLDEAIALLKAIEG 437

Query: 273 TQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQ 332
           +   PD+     VI+G C+ G +E A  + +++ + K   P+  T+T +I GL   G + 
Sbjct: 438 SNMDPDIQIYTIVIDGMCRAGELEAARDLFSNL-SSKGLHPNVWTYTIMINGLCQQGLLA 496

Query: 333 EALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIV 392
           EA + L+  M ++GYSP   TYN + RG  R        ++   ML  G  AD +T  ++
Sbjct: 497 EA-SKLFGEMKRKGYSPNGCTYNLITRGFLRNNETLRGIQLLQEMLARGFSADVSTSTVL 555

Query: 393 IDGLCESNQLDEAKR 407
           ++ L + + LD++ +
Sbjct: 556 VEMLSD-DGLDQSVK 569



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 93/331 (28%), Positives = 160/331 (48%), Gaps = 4/331 (1%)

Query: 172 PSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKV 231
           PS+  +  ++  + K         L  +   FG  P+ +T  +L+   C    L  A  V
Sbjct: 57  PSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTLNILINSFCHLQRLGFAFSV 116

Query: 232 LQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK 291
           L  +L           N  +R LC+     E+L++   M+    QP+V+T  T+ING CK
Sbjct: 117 LAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCK 176

Query: 292 MGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGI 351
           +G    A+++L  M  G  C PD V +T+II  L    ++ +A NL  +++ Q G SP I
Sbjct: 177 VGSTSAAIRLLRSMEQGN-CQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQ-GISPSI 234

Query: 352 VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDD 411
            TYN+++  L  L   +    + N M+   ++ +   ++ V+D LC+  ++ EA    D 
Sbjct: 235 FTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDM 294

Query: 412 IVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSM 471
           ++      +   Y A++ G C   ++ EAV     +V  G  P++V Y+ +I+G CK+  
Sbjct: 295 MIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQR 354

Query: 472 KREAYQILREMRKNGLNPDAVTWRILDKLHG 502
             +A  +  EM +  L P+ VT+  L  +HG
Sbjct: 355 IEKAMYLFEEMCRKELIPNTVTYSTL--MHG 383



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/342 (25%), Positives = 147/342 (42%), Gaps = 41/342 (11%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   +V EAH +   M  RG  PNVV+Y  L+ G+C   EMD A KVFD M   G 
Sbjct: 276 VDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGF 335

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ ++YS L+ G  + + +E+A      L+E M  +E L  N   ++ L+  LC  G +
Sbjct: 336 APDVVSYSTLINGYCKIQRIEKA----MYLFEEMCRKE-LIPNTVTYSTLMHGLCHVGRL 390

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +   +  +M     + +  +   ++D LC++ R   A  ++  +    + P +  Y  +
Sbjct: 391 QDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIV 450

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G+C+ G    A  L       G  P+  TY +++ GLC +  L +A K+   M  K  
Sbjct: 451 IDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKG- 509

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                               P+  T N +  GF +       ++
Sbjct: 510 ----------------------------------YSPNGCTYNLITRGFLRNNETLRGIQ 535

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVM 342
           +L +M+A  F A D  T T ++  L + G  Q    +L + +
Sbjct: 536 LLQEMLARGFSA-DVSTSTVLVEMLSDDGLDQSVKQILSEFL 576


>gi|79369396|ref|NP_176481.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806495|sp|Q9LQ14.2|PPR96_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62930, chloroplastic; Flags: Precursor
 gi|332195902|gb|AEE34023.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score =  223 bits (568), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 135/494 (27%), Positives = 250/494 (50%), Gaps = 42/494 (8%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C  S++  A  +   M   G+ P++V+ ++L++GYC    +  A  + D+M      PN
Sbjct: 125 FCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPN 184

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           ++T++ L+ G+        A  L+ ++  R  + +  +     +  +V+ LC+ G ++  
Sbjct: 185 TVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFT-----YGTVVNGLCKRGDIDLA 239

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             + + M +GK   +      +ID+LC     + A  +   M  +G+ P++V+YNS++  
Sbjct: 240 LSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRC 299

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LC +G    A +LL + I+    P+  T+  L++    E  L +A K+   M+ K+ +D 
Sbjct: 300 LCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMI-KRSID- 357

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                                            PD+ T +++INGFC   R++EA K + 
Sbjct: 358 ---------------------------------PDIFTYSSLINGFCMHDRLDEA-KHMF 383

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           +++  K C P+ VT+ T+I G     R++E + L ++ M QRG     VTYN +++GLF+
Sbjct: 384 ELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMEL-FREMSQRGLVGNTVTYNTLIQGLFQ 442

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
               + A+++F  M+  GV  D  TY+I++DGLC+  +L++A   ++ +       D Y 
Sbjct: 443 AGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYT 502

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y  MI+G+C++GK+ +       L   GV PN++ Y  +I G C+  +K EA  + REM+
Sbjct: 503 YNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMK 562

Query: 484 KNGLNPDAVTWRIL 497
           ++G  P++ T+  L
Sbjct: 563 EDGTLPNSGTYNTL 576



 Score =  199 bits (505), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 136/501 (27%), Positives = 234/501 (46%), Gaps = 43/501 (8%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C   R+ EA  L   M    + PN V++ TLIHG     +   A  + D M   G  P+ 
Sbjct: 161 CHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDL 220

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
            TY  +V G+ +  D++ A  L+ K+ E+ K E D+ +    +  ++D+LC    VN+  
Sbjct: 221 FTYGTVVNGLCKRGDIDLALSLLKKM-EKGKIEADVVI----YTTIIDALCNYKNVNDAL 275

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
            +  +M              +I  LC  GR   ASR++  M +R + P++V++++++   
Sbjct: 276 NLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAF 335

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
            K G  + A +L +E I+    P   TY  L+ G C    L++A+ + + M+SK      
Sbjct: 336 VKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISK------ 389

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
                                         C P+V+T NT+I GFCK  R+EE +++  +
Sbjct: 390 -----------------------------DCFPNVVTYNTLIKGFCKAKRVEEGMELFRE 420

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
           M + +    + VT+ T+I GL   G    A   +++ M   G  P I+TY+ +L GL + 
Sbjct: 421 M-SQRGLVGNTVTYNTLIQGLFQAGDCDMAQK-IFKKMVSDGVPPDIITYSILLDGLCKY 478

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY 424
            ++E+A  VF  +    +  D  TY I+I+G+C++ ++++    +  +       +  +Y
Sbjct: 479 GKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIY 538

Query: 425 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484
             MI G CR G   EA     E+ + G  PN   YN +I    +   K  + ++++EMR 
Sbjct: 539 TTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRS 598

Query: 485 NGLNPDAVTWR-ILDKLHGNR 504
            G   DA T   +++ LH  R
Sbjct: 599 CGFVGDASTISMVINMLHDGR 619



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 118/454 (25%), Positives = 219/454 (48%), Gaps = 7/454 (1%)

Query: 44  EMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVN 103
           ++D A  +F EM     LP+ + ++ L+  + +    +    L+  L ERM+    +S +
Sbjct: 60  KLDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFD----LVISLGERMQNLR-ISYD 114

Query: 104 NAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVY 163
             ++  L++  CR   +     +   M +     +      +++  C   R   A  +V 
Sbjct: 115 LYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVD 174

Query: 164 VMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGES 223
            M      P+ V++N+++HGL  H     A  L++  +  G  P   TY  +V GLC   
Sbjct: 175 QMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRG 234

Query: 224 DLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLN 283
           D++ A  +L+ M   K      I    + ALC  KN  + LN+   M     +P+V+T N
Sbjct: 235 DIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYN 294

Query: 284 TVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMP 343
           ++I   C  GR  +A ++L+DM+  K   P+ VTF+ +I   +  G++ EA   LY  M 
Sbjct: 295 SLIRCLCNYGRWSDASRLLSDMIERKI-NPNVVTFSALIDAFVKEGKLVEA-EKLYDEMI 352

Query: 344 QRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLD 403
           +R   P I TY++++ G     R++EAK +F  M+      +  TY  +I G C++ +++
Sbjct: 353 KRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVE 412

Query: 404 EAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463
           E    + ++     + +   Y  +I+GL ++G    A     ++V  GV P+I+ Y++++
Sbjct: 413 EGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILL 472

Query: 464 DGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           DG CK     +A  +   ++K+ + PD  T+ I+
Sbjct: 473 DGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIM 506



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 108/404 (26%), Positives = 193/404 (47%), Gaps = 11/404 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC    +  A  L   M+      +VV YTT+I   C    ++ A  +F EM + G+ PN
Sbjct: 230 LCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPN 289

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY+ L+R +        A+ L+  + ER      ++ N   F+ L+D+  +EG + E 
Sbjct: 290 VVTYNSLIRCLCNYGRWSDASRLLSDMIER-----KINPNVVTFSALIDAFVKEGKLVEA 344

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            ++ ++M +     + F    +I+  C   R   A  +  +M  +   P++V+YN+++ G
Sbjct: 345 EKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKG 404

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK        +L  E  Q G + +  TY  L++GL    D + A+K+ + M+S      
Sbjct: 405 FCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPD 464

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               +I L  LC      + L V  ++ +++ +PD+ T N +I G CK G++E+   +  
Sbjct: 465 IITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFC 524

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            + + K   P+ + +TT+I G    G  +EA + L++ M + G  P   TYN ++R   R
Sbjct: 525 SL-SLKGVKPNVIIYTTMISGFCRKGLKEEA-DALFREMKEDGTLPNSGTYNTLIRARLR 582

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVI----DGLCESNQLD 403
                 + E+   M   G V D++T ++VI    DG  E + L+
Sbjct: 583 DGDKAASAELIKEMRSCGFVGDASTISMVINMLHDGRLEKSYLE 626



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 112/236 (47%), Gaps = 2/236 (0%)

Query: 270 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG 329
           M+Q++  P ++  N +++   KM + +  +  L + +     + D  ++  +I       
Sbjct: 71  MVQSRPLPSIVEFNKLLSAIAKMNKFDLVIS-LGERMQNLRISYDLYSYNILINCFCRRS 129

Query: 330 RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTY 389
           ++  AL +L ++M + GY P IVT +++L G    +R+ EA  + + M  +    ++ T+
Sbjct: 130 QLPLALAVLGKMM-KLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTF 188

Query: 390 AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449
             +I GL   N+  EA    D +V      D + Y  ++ GLC+ G I  A+  L ++  
Sbjct: 189 NTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEK 248

Query: 450 SGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
             +  ++V Y  +ID  C      +A  +  EM   G+ P+ VT+  L +   N G
Sbjct: 249 GKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYG 304



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 47/79 (59%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ +C   +V +   LF  +  +G  PNV+ YTT+I G+CR G  + A  +F EM+  G 
Sbjct: 507 IEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGT 566

Query: 61  LPNSLTYSVLVRGVLRTRD 79
           LPNS TY+ L+R  LR  D
Sbjct: 567 LPNSGTYNTLIRARLRDGD 585


>gi|125528410|gb|EAY76524.1| hypothetical protein OsI_04465 [Oryza sativa Indica Group]
          Length = 703

 Score =  223 bits (568), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 145/532 (27%), Positives = 255/532 (47%), Gaps = 44/532 (8%)

Query: 3   QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
            LC    +  A  LF  ++ R   P+ ++Y+TL+ G  +   +D A  + DEM   GV P
Sbjct: 167 SLCARGDLDRAVTLFDSLRRRQVAPDCITYSTLMCGLAKQDRLDHALDLLDEMPRSGVQP 226

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           + + Y+ L+ G  +  + E+    + ++W+++ ++     N A +  ++D LC+ G   E
Sbjct: 227 DVVCYNALLGGCFKAGEFEK----VMRVWDKLVKDPGARPNLATYNVMLDGLCKFGRFKE 282

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
           V  + E M       +    G +I  LCRSG   GA+RV   + K GL      YNS+V 
Sbjct: 283 VGEVWERMVANNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVIDAAMYNSLVK 342

Query: 183 GLCKHGGCMRAYQ---------------------------LLEEGIQFGYL--------P 207
           G C+ G    A++                           +++E I+   L        P
Sbjct: 343 GFCQAGRVQEAWKFWDSAGFAGLRNLRTYNIMIKGLFDSGMVDEAIELWDLLEKDVACIP 402

Query: 208 SEHTYKVLVEGLCGESDLEKARKVLQ-FMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 266
              T+  L+ GLC      KA  + +   +S K +D     ++ +  LC +    + + V
Sbjct: 403 DTVTFGTLIHGLCQNGFANKAFTIFEEARVSGKQLDVFSYSSM-INGLCNVGRLVDAVKV 461

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
              M +  C+P+    N +I+GFC++ R  +A+++ + M A   C+P  +T+ T+I GL 
Sbjct: 462 YEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSKM-ADNGCSPTVITYNTLIDGLC 520

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
              + QEA ++  + M + G++P I TY +++RGLF  +++++A  ++  +L  G+  D 
Sbjct: 521 KAEKYQEASSVARE-MVENGFTPDITTYGSLIRGLFSDKKIDDALSIWKQILYKGLKVDV 579

Query: 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV-YAAMIKGLCRSGKIHEAVHFLY 445
             + I+I GLC + ++DEA   + D+    N   N V Y  ++ GL  +G I +A     
Sbjct: 580 MMHNILIHGLCSAGKVDEALHVFSDMKEKKNCPPNLVTYNTLMDGLYETGYIDKAATLWT 639

Query: 446 ELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            + + G+ P+I+ YN  I G C      E  Q+L E+   G+ P  +TW IL
Sbjct: 640 SITEDGLEPDIISYNTRIKGLCSCDRIHEGIQLLDEVLSRGIIPTVITWNIL 691



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 132/505 (26%), Positives = 232/505 (45%), Gaps = 47/505 (9%)

Query: 4   LCGLS---RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEM-RHCG 59
           +CGL+   R+  A  L  +M   G  P+VV Y  L+ G  + GE +   +V+D++ +  G
Sbjct: 200 MCGLAKQDRLDHALDLLDEMPRSGVQPDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDPG 259

Query: 60  VLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGY 119
             PN  TY+V++ G+ +    +       ++WERM    +L  +   +  L+  LCR G 
Sbjct: 260 ARPNLATYNVMLDGLCKFGRFKEVG----EVWERMVAN-NLQPDVITYGILIHGLCRSGD 314

Query: 120 VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRV-------------VYVMR 166
           V+   R+  ++ +   V +      ++   C++GR   A +               Y + 
Sbjct: 315 VDGAARVYSEIIKTGLVIDAAMYNSLVKGFCQAGRVQEAWKFWDSAGFAGLRNLRTYNIM 374

Query: 167 KRGL----------------------TPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
            +GL                       P  V++ +++HGLC++G   +A+ + EE    G
Sbjct: 375 IKGLFDSGMVDEAIELWDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTIFEEARVSG 434

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL 264
                 +Y  ++ GLC    L  A KV + M        + I N  +   C +   ++ +
Sbjct: 435 KQLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYRTSDAV 494

Query: 265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 324
            +   M    C P VIT NT+I+G CK  + +EA  V  +MV   F  PD  T+ ++I G
Sbjct: 495 RIYSKMADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMVENGF-TPDITTYGSLIRG 553

Query: 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCML-GIGVV 383
           L +  +I +AL++  Q++  +G    ++ +N ++ GL    +V+EA  VF+ M       
Sbjct: 554 LFSDKKIDDALSIWKQIL-YKGLKVDVMMHNILIHGLCSAGKVDEALHVFSDMKEKKNCP 612

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
            +  TY  ++DGL E+  +D+A   W  I       D   Y   IKGLC   +IHE +  
Sbjct: 613 PNLVTYNTLMDGLYETGYIDKAATLWTSITEDGLEPDIISYNTRIKGLCSCDRIHEGIQL 672

Query: 444 LYELVDSGVTPNIVCYNVVIDGACK 468
           L E++  G+ P ++ +N+++    K
Sbjct: 673 LDEVLSRGIIPTVITWNILVRAVIK 697



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/263 (29%), Positives = 134/263 (50%), Gaps = 5/263 (1%)

Query: 248 NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA 307
           NI LR+LC   +    + +   + + Q  PD IT +T++ G  K  R++ AL +L++M  
Sbjct: 162 NIVLRSLCARGDLDRAVTLFDSLRRRQVAPDCITYSTLMCGLAKQDRLDHALDLLDEMPR 221

Query: 308 GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRV 367
                PD V +  ++ G    G  ++ + +  +++   G  P + TYN +L GL +  R 
Sbjct: 222 SGV-QPDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDGLCKFGRF 280

Query: 368 EEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAM 427
           +E  EV+  M+   +  D  TY I+I GLC S  +D A R + +I+    + D  +Y ++
Sbjct: 281 KEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVIDAAMYNSL 340

Query: 428 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN-G 486
           +KG C++G++ EA  F      +G+  N+  YN++I G     M  EA ++   + K+  
Sbjct: 341 VKGFCQAGRVQEAWKFWDSAGFAGLR-NLRTYNIMIKGLFDSGMVDEAIELWDLLEKDVA 399

Query: 487 LNPDAVTWRILDKLHGNRGNDFG 509
             PD VT+  L  +HG   N F 
Sbjct: 400 CIPDTVTFGTL--IHGLCQNGFA 420



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 87/432 (20%), Positives = 156/432 (36%), Gaps = 136/432 (31%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   R  E  +++  M +    P+V++Y  LIHG CR+G++D A +V+ E+   G+
Sbjct: 271 LDGLCKFGRFKEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGL 330

Query: 61  LPNSLTYSVLVRGVLRTRDVERA------------------NVLM------------FKL 90
           + ++  Y+ LV+G  +   V+ A                  N+++             +L
Sbjct: 331 VIDAAMYNSLVKGFCQAGRVQEAWKFWDSAGFAGLRNLRTYNIMIKGLFDSGMVDEAIEL 390

Query: 91  WERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC 150
           W+ ++++     +   F  L+  LC+ G+ N+ F I E+        + F+   MI+ LC
Sbjct: 391 WDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTIFEEARVSGKQLDVFSYSSMINGLC 450

Query: 151 RSGR-----------------------------------NHGASRVVYVMRKRGLTPSLV 175
             GR                                      A R+   M   G +P+++
Sbjct: 451 NVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSKMADNGCSPTVI 510

Query: 176 SYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTY----------------------- 212
           +YN+++ GLCK      A  +  E ++ G+ P   TY                       
Sbjct: 511 TYNTLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGSLIRGLFSDKKIDDALSIWKQI 570

Query: 213 ------------KVLVEGLCGESDLEKARKVLQFMLSKKD-------------------- 240
                        +L+ GLC    +++A  V   M  KK+                    
Sbjct: 571 LYKGLKVDVMMHNILIHGLCSAGKVDEALHVFSDMKEKKNCPPNLVTYNTLMDGLYETGY 630

Query: 241 VDRTRIC----------------NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNT 284
           +D+                    N  ++ LC      E + +L  +L     P VIT N 
Sbjct: 631 IDKAATLWTSITEDGLEPDIISYNTRIKGLCSCDRIHEGIQLLDEVLSRGIIPTVITWNI 690

Query: 285 VINGFCKMGRIE 296
           ++    K G I+
Sbjct: 691 LVRAVIKYGPIQ 702



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 87/205 (42%), Gaps = 43/205 (20%)

Query: 339 YQVMPQ-RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCM----LGIGVVADSTTYAIVI 393
           ++ +P   G +PGI ++NA+L    R RR  +A   F  +     G  +  +  TY IV+
Sbjct: 106 FRALPSILGCNPGIRSHNALLDAFVRARRFSDADAFFASLSHGAFGRRIAPNLQTYNIVL 165

Query: 394 DGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVT 453
             LC    LD A   +D +       D   Y+ ++ GL +  ++  A+  L E+  SGV 
Sbjct: 166 RSLCARGDLDRAVTLFDSLRRRQVAPDCITYSTLMCGLAKQDRLDHALDLLDEMPRSGVQ 225

Query: 454 PNIVC------------------------------------YNVVIDGACKLSMKREAYQ 477
           P++VC                                    YNV++DG CK    +E  +
Sbjct: 226 PDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDGLCKFGRFKEVGE 285

Query: 478 ILREMRKNGLNPDAVTWRILDKLHG 502
           +   M  N L PD +T+ IL  +HG
Sbjct: 286 VWERMVANNLQPDVITYGIL--IHG 308


>gi|115474441|ref|NP_001060817.1| Os08g0110200 [Oryza sativa Japonica Group]
 gi|42408384|dbj|BAD09535.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113622786|dbj|BAF22731.1| Os08g0110200 [Oryza sativa Japonica Group]
 gi|125601950|gb|EAZ41275.1| hypothetical protein OsJ_25782 [Oryza sativa Japonica Group]
          Length = 798

 Score =  223 bits (568), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 156/533 (29%), Positives = 258/533 (48%), Gaps = 39/533 (7%)

Query: 4   LCGLSRVGEA----HKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCG 59
           LC  +R  +A    H +  D    G  P+VVSYTT+I+G  R G++D AY +FDEM   G
Sbjct: 177 LCDENRSQQALHLLHTMMADDTRGGCPPDVVSYTTVINGLLREGQLDKAYCLFDEMLDQG 236

Query: 60  VLPNSLTYSVLVRGVLRT-------------------RDVERANVLMFKLWERMKEEEDL 100
           + PN +TY+ L+ G   +                    DV   N LM  L +  +  E  
Sbjct: 237 MSPNCITYNCLLHGYCSSGKPKEAIGIFRKMCRDGVEPDVVTYNTLMVYLCKNGRSMEAR 296

Query: 101 SV-----------NNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSL 149
            V           +++ +  L+     EGY+ ++ ++ + M +  +  + +    +I + 
Sbjct: 297 KVFDSMVKKGHKPDSSIYGTLLHGYATEGYLVQMHQLLDVMVRNGTQPDHYIFNILIGAY 356

Query: 150 CRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSE 209
            + G    A      MR++GL P++V+Y +++  LC+ G    A    +  I  G  P+ 
Sbjct: 357 AKHGMVDEAMLAFSKMRQQGLHPNIVTYGTVMDALCRVGKVDDAMSQFDRLISEGLTPNG 416

Query: 210 HTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVF 269
             ++ L+ GLC     +KA ++   M+ +     T   N  L  LC     T   N+   
Sbjct: 417 VVFRTLIHGLCACDKWDKAEELAVEMIGRGICPNTIFFNTLLNHLCKEGMVTRAKNIFDL 476

Query: 270 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG 329
           M++   Q DVIT  T+I+G+C  G+++EA K+L  MV      P+ VT+ TII G    G
Sbjct: 477 MVRVDVQCDVITYTTLIDGYCLDGKVDEATKLLEGMVLDGV-KPNEVTYNTIINGYCKNG 535

Query: 330 RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTY 389
           RI++A +L  Q M  +G +PGIV Y+ +L GLF+ RR+  AKE++  M+  G+     TY
Sbjct: 536 RIEDACSLFRQ-MASKGVNPGIVIYSTILHGLFQTRRIAAAKELYLWMIKCGIKLPIGTY 594

Query: 390 AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449
            I++ GLC++N  D+A R + ++        N  +  MI  L + G+  EA      L+ 
Sbjct: 595 NIILQGLCQNNCTDDALRMFHNLCLIDFHLQNRTFNIMIDALLKGGRHDEAKDLFASLLA 654

Query: 450 SGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
            G+ PN+V Y +++    +  +  E   +   + KNG   D+   R+L+ L G
Sbjct: 655 RGLVPNVVTYWLMMKSLIEQGLLEELDDLFLSLEKNGCTADS---RMLNALVG 704



 Score =  167 bits (424), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 126/539 (23%), Positives = 244/539 (45%), Gaps = 42/539 (7%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           E+  +   + +R    ++ +Y+ +I    R G +D+A+     +   G    ++T+S L+
Sbjct: 79  ESPAVALSLFNRMPRADLCTYSIVIGCCSRAGHLDLAFAALGRVIRTGWTAQAITFSPLL 138

Query: 72  RGVLRTRDVERA--------------------NVLMFKLWERMKEEEDLSV--------- 102
           +G+   +    A                    N+L+  L +  + ++ L +         
Sbjct: 139 KGLCHDKRTSDAMDIALRRMPALGCTPNAFSYNILLKGLCDENRSQQALHLLHTMMADDT 198

Query: 103 ------NNAAFANLVDSLCREGYVNEVFRIAEDM-PQGKSVN-EEFACGHMIDSLCRSGR 154
                 +  ++  +++ L REG +++ + + ++M  QG S N   + C  ++   C SG+
Sbjct: 199 RGGCPPDVVSYTTVINGLLREGQLDKAYCLFDEMLDQGMSPNCITYNC--LLHGYCSSGK 256

Query: 155 NHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKV 214
              A  +   M + G+ P +V+YN+++  LCK+G  M A ++ +  ++ G+ P    Y  
Sbjct: 257 PKEAIGIFRKMCRDGVEPDVVTYNTLMVYLCKNGRSMEARKVFDSMVKKGHKPDSSIYGT 316

Query: 215 LVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQ 274
           L+ G   E  L +  ++L  M+         I NI + A        E +     M Q  
Sbjct: 317 LLHGYATEGYLVQMHQLLDVMVRNGTQPDHYIFNILIGAYAKHGMVDEAMLAFSKMRQQG 376

Query: 275 CQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEA 334
             P+++T  TV++  C++G++++A+   + +++     P+ V F T+I GL    +  +A
Sbjct: 377 LHPNIVTYGTVMDALCRVGKVDDAMSQFDRLISEGL-TPNGVVFRTLIHGLCACDKWDKA 435

Query: 335 LNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVID 394
             L  + M  RG  P  + +N +L  L +   V  AK +F+ M+ + V  D  TY  +ID
Sbjct: 436 EELAVE-MIGRGICPNTIFFNTLLNHLCKEGMVTRAKNIFDLMVRVDVQCDVITYTTLID 494

Query: 395 GLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTP 454
           G C   ++DEA +  + +V      +   Y  +I G C++G+I +A     ++   GV P
Sbjct: 495 GYCLDGKVDEATKLLEGMVLDGVKPNEVTYNTIINGYCKNGRIEDACSLFRQMASKGVNP 554

Query: 455 NIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWR-ILDKLHGNRGNDFGLRI 512
            IV Y+ ++ G  +      A ++   M K G+     T+  IL  L  N   D  LR+
Sbjct: 555 GIVIYSTILHGLFQTRRIAAAKELYLWMIKCGIKLPIGTYNIILQGLCQNNCTDDALRM 613



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 133/498 (26%), Positives = 220/498 (44%), Gaps = 44/498 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M  LC   R  EA K+F  M  +GH P+   Y TL+HGY   G +   +++ D M   G 
Sbjct: 283 MVYLCKNGRSMEARKVFDSMVKKGHKPDSSIYGTLLHGYATEGYLVQMHQLLDVMVRNGT 342

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+   +++L+    +   V+ A +   K+      ++ L  N   +  ++D+LCR G V
Sbjct: 343 QPDHYIFNILIGAYAKHGMVDEAMLAFSKM-----RQQGLHPNIVTYGTVMDALCRVGKV 397

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           ++       M Q   +  E                             GLTP+ V + ++
Sbjct: 398 DDA------MSQFDRLISE-----------------------------GLTPNGVVFRTL 422

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +HGLC      +A +L  E I  G  P+   +  L+  LC E  + +A+ +   M+ + D
Sbjct: 423 IHGLCACDKWDKAEELAVEMIGRGICPNTIFFNTLLNHLCKEGMVTRAKNIFDLMV-RVD 481

Query: 241 VDRTRIC-NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
           V    I     +   CL     E   +L  M+    +P+ +T NT+ING+CK GRIE+A 
Sbjct: 482 VQCDVITYTTLIDGYCLDGKVDEATKLLEGMVLDGVKPNEVTYNTIINGYCKNGRIEDAC 541

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
            +   M A K   P  V ++TI+ GL    RI  A   LY  M + G    I TYN +L+
Sbjct: 542 SLFRQM-ASKGVNPGIVIYSTILHGLFQTRRIAAAKE-LYLWMIKCGIKLPIGTYNIILQ 599

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
           GL +    ++A  +F+ +  I     + T+ I+ID L +  + DEAK  +  ++    + 
Sbjct: 600 GLCQNNCTDDALRMFHNLCLIDFHLQNRTFNIMIDALLKGGRHDEAKDLFASLLARGLVP 659

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           +   Y  M+K L   G + E       L  +G T +    N ++    +    R+A   L
Sbjct: 660 NVVTYWLMMKSLIEQGLLEELDDLFLSLEKNGCTADSRMLNALVGKLPQKGEVRKAGVYL 719

Query: 480 REMRKNGLNPDAVTWRIL 497
            ++ +N  + +A T   L
Sbjct: 720 SKIDENNFSLEASTAESL 737



 Score = 38.1 bits (87), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 60/136 (44%), Gaps = 6/136 (4%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D L    R  EA  LF  + +RG VPNVV+Y  ++      G ++    +F  +   G 
Sbjct: 633 IDALLKGGRHDEAKDLFASLLARGLVPNVVTYWLMMKSLIEQGLLEELDDLFLSLEKNGC 692

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             +S   + LV  + +  +V +A V + K+     +E + S+  +   +LV  +    Y 
Sbjct: 693 TADSRMLNALVGKLPQKGEVRKAGVYLSKI-----DENNFSLEASTAESLVFLVSSGKYD 747

Query: 121 NEVFRIAEDM-PQGKS 135
             +  I E   P  KS
Sbjct: 748 QHINSIPEKYRPTAKS 763


>gi|8493580|gb|AAF75803.1|AC011000_6 Contains weak similarity to leaf protein from Ipomea nil gb|D85101
           and contains a RepB PF|01051 protein and multiple PPR
           PF|01535 repeats [Arabidopsis thaliana]
          Length = 613

 Score =  223 bits (567), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 135/494 (27%), Positives = 250/494 (50%), Gaps = 42/494 (8%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C  S++  A  +   M   G+ P++V+ ++L++GYC    +  A  + D+M      PN
Sbjct: 109 FCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPN 168

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           ++T++ L+ G+        A  L+ ++  R  + +  +     +  +V+ LC+ G ++  
Sbjct: 169 TVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFT-----YGTVVNGLCKRGDIDLA 223

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             + + M +GK   +      +ID+LC     + A  +   M  +G+ P++V+YNS++  
Sbjct: 224 LSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRC 283

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LC +G    A +LL + I+    P+  T+  L++    E  L +A K+   M+ K+ +D 
Sbjct: 284 LCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMI-KRSID- 341

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                                            PD+ T +++INGFC   R++EA K + 
Sbjct: 342 ---------------------------------PDIFTYSSLINGFCMHDRLDEA-KHMF 367

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           +++  K C P+ VT+ T+I G     R++E + L ++ M QRG     VTYN +++GLF+
Sbjct: 368 ELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMEL-FREMSQRGLVGNTVTYNTLIQGLFQ 426

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
               + A+++F  M+  GV  D  TY+I++DGLC+  +L++A   ++ +       D Y 
Sbjct: 427 AGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYT 486

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y  MI+G+C++GK+ +       L   GV PN++ Y  +I G C+  +K EA  + REM+
Sbjct: 487 YNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMK 546

Query: 484 KNGLNPDAVTWRIL 497
           ++G  P++ T+  L
Sbjct: 547 EDGTLPNSGTYNTL 560



 Score =  199 bits (505), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 136/501 (27%), Positives = 234/501 (46%), Gaps = 43/501 (8%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C   R+ EA  L   M    + PN V++ TLIHG     +   A  + D M   G  P+ 
Sbjct: 145 CHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDL 204

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
            TY  +V G+ +  D++ A  L+ K+ E+ K E D+ +    +  ++D+LC    VN+  
Sbjct: 205 FTYGTVVNGLCKRGDIDLALSLLKKM-EKGKIEADVVI----YTTIIDALCNYKNVNDAL 259

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
            +  +M              +I  LC  GR   ASR++  M +R + P++V++++++   
Sbjct: 260 NLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAF 319

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
            K G  + A +L +E I+    P   TY  L+ G C    L++A+ + + M+SK      
Sbjct: 320 VKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISK------ 373

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
                                         C P+V+T NT+I GFCK  R+EE +++  +
Sbjct: 374 -----------------------------DCFPNVVTYNTLIKGFCKAKRVEEGMELFRE 404

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
           M + +    + VT+ T+I GL   G    A   +++ M   G  P I+TY+ +L GL + 
Sbjct: 405 M-SQRGLVGNTVTYNTLIQGLFQAGDCDMAQK-IFKKMVSDGVPPDIITYSILLDGLCKY 462

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY 424
            ++E+A  VF  +    +  D  TY I+I+G+C++ ++++    +  +       +  +Y
Sbjct: 463 GKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIY 522

Query: 425 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484
             MI G CR G   EA     E+ + G  PN   YN +I    +   K  + ++++EMR 
Sbjct: 523 TTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRS 582

Query: 485 NGLNPDAVTWR-ILDKLHGNR 504
            G   DA T   +++ LH  R
Sbjct: 583 CGFVGDASTISMVINMLHDGR 603



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 118/454 (25%), Positives = 219/454 (48%), Gaps = 7/454 (1%)

Query: 44  EMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVN 103
           ++D A  +F EM     LP+ + ++ L+  + +    +    L+  L ERM+    +S +
Sbjct: 44  KLDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFD----LVISLGERMQNLR-ISYD 98

Query: 104 NAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVY 163
             ++  L++  CR   +     +   M +     +      +++  C   R   A  +V 
Sbjct: 99  LYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVD 158

Query: 164 VMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGES 223
            M      P+ V++N+++HGL  H     A  L++  +  G  P   TY  +V GLC   
Sbjct: 159 QMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRG 218

Query: 224 DLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLN 283
           D++ A  +L+ M   K      I    + ALC  KN  + LN+   M     +P+V+T N
Sbjct: 219 DIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYN 278

Query: 284 TVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMP 343
           ++I   C  GR  +A ++L+DM+  K   P+ VTF+ +I   +  G++ EA   LY  M 
Sbjct: 279 SLIRCLCNYGRWSDASRLLSDMIERKI-NPNVVTFSALIDAFVKEGKLVEA-EKLYDEMI 336

Query: 344 QRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLD 403
           +R   P I TY++++ G     R++EAK +F  M+      +  TY  +I G C++ +++
Sbjct: 337 KRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVE 396

Query: 404 EAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463
           E    + ++     + +   Y  +I+GL ++G    A     ++V  GV P+I+ Y++++
Sbjct: 397 EGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILL 456

Query: 464 DGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           DG CK     +A  +   ++K+ + PD  T+ I+
Sbjct: 457 DGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIM 490



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 108/404 (26%), Positives = 193/404 (47%), Gaps = 11/404 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC    +  A  L   M+      +VV YTT+I   C    ++ A  +F EM + G+ PN
Sbjct: 214 LCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPN 273

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY+ L+R +        A+ L+  + ER      ++ N   F+ L+D+  +EG + E 
Sbjct: 274 VVTYNSLIRCLCNYGRWSDASRLLSDMIER-----KINPNVVTFSALIDAFVKEGKLVEA 328

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            ++ ++M +     + F    +I+  C   R   A  +  +M  +   P++V+YN+++ G
Sbjct: 329 EKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKG 388

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK        +L  E  Q G + +  TY  L++GL    D + A+K+ + M+S      
Sbjct: 389 FCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPD 448

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               +I L  LC      + L V  ++ +++ +PD+ T N +I G CK G++E+   +  
Sbjct: 449 IITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFC 508

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            + + K   P+ + +TT+I G    G  +EA + L++ M + G  P   TYN ++R   R
Sbjct: 509 SL-SLKGVKPNVIIYTTMISGFCRKGLKEEA-DALFREMKEDGTLPNSGTYNTLIRARLR 566

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVI----DGLCESNQLD 403
                 + E+   M   G V D++T ++VI    DG  E + L+
Sbjct: 567 DGDKAASAELIKEMRSCGFVGDASTISMVINMLHDGRLEKSYLE 610



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 112/236 (47%), Gaps = 2/236 (0%)

Query: 270 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG 329
           M+Q++  P ++  N +++   KM + +  +  L + +     + D  ++  +I       
Sbjct: 55  MVQSRPLPSIVEFNKLLSAIAKMNKFDLVIS-LGERMQNLRISYDLYSYNILINCFCRRS 113

Query: 330 RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTY 389
           ++  AL +L ++M + GY P IVT +++L G    +R+ EA  + + M  +    ++ T+
Sbjct: 114 QLPLALAVLGKMM-KLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTF 172

Query: 390 AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449
             +I GL   N+  EA    D +V      D + Y  ++ GLC+ G I  A+  L ++  
Sbjct: 173 NTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEK 232

Query: 450 SGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
             +  ++V Y  +ID  C      +A  +  EM   G+ P+ VT+  L +   N G
Sbjct: 233 GKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYG 288



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 47/79 (59%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ +C   +V +   LF  +  +G  PNV+ YTT+I G+CR G  + A  +F EM+  G 
Sbjct: 491 IEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGT 550

Query: 61  LPNSLTYSVLVRGVLRTRD 79
           LPNS TY+ L+R  LR  D
Sbjct: 551 LPNSGTYNTLIRARLRDGD 569


>gi|224086515|ref|XP_002307901.1| predicted protein [Populus trichocarpa]
 gi|222853877|gb|EEE91424.1| predicted protein [Populus trichocarpa]
          Length = 724

 Score =  223 bits (567), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 157/514 (30%), Positives = 259/514 (50%), Gaps = 14/514 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M  LC ++ V  A  L  DM   G VPN + Y TLI    +   +D A K+ +EM   G 
Sbjct: 217 MKALCMVNEVDNACLLLRDMTKHGCVPNSMIYQTLIDALSKRDRVDEALKLLEEMFLMGC 276

Query: 61  LPNSLTYSVLVRGVLR-TRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGY 119
            P+  T++ ++ G  R  R +E A     KL +RM  +   + N+  +  L+  LC+   
Sbjct: 277 PPDVNTFNTVIYGFCRLNRVLEGA-----KLVDRMILK-GFTPNDMTYGYLMHGLCKTCR 330

Query: 120 VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVY-VMRKRGLTPSLVSYN 178
           ++E   +   +P    V+       +++   R+GR + A+  VY  M   G  P + +++
Sbjct: 331 IDEAQALLSKVPGPNVVH----FNTLVNGFVRNGRLNEATAFVYDKMINNGYVPDVFTFS 386

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
           ++V+GLCK G    A +L+ +    G  P+ +TY +L++G C +  LE+A  +L+ ML+K
Sbjct: 387 TLVNGLCKKGLFGSALELVNDMDAKGCKPNLNTYTILIDGFCKKGQLEEAGLILREMLTK 446

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
                T   N  + ALC      E L++   M    C+PD+ T N++I G C++  +E+A
Sbjct: 447 GFSLNTVGYNALISALCKHGKIHEALDMFGEMSSKGCKPDIFTFNSLIFGLCRVDEMEDA 506

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
           L +  DMV     A ++VTF T+I   L  G IQEAL L+  ++  RG     +TYN ++
Sbjct: 507 LALYRDMVLEGVIA-NSVTFNTLIHAFLRRGEIQEALKLVNDML-FRGCPLDEITYNGLI 564

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
           + L +   VE+   +F  M+  G+     T  I+I+G C + ++  A  F  D++     
Sbjct: 565 KALCKTGAVEKGLGLFEEMIRKGLTPSIITCNILINGFCTAGKVHNALEFMRDMIHRGFS 624

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI 478
            D   Y ++I GLC+ G+I EA++   +L   G+ P+ + YN +I   C+     +A  +
Sbjct: 625 PDIVTYNSLINGLCKRGRIQEALNLFEKLQAEGIQPDSITYNTLICWLCREGAFDDACFL 684

Query: 479 LREMRKNGLNPDAVTWRILDKLHGNRGNDFGLRI 512
           L    +NG  P+ VTW IL    G + N  G  I
Sbjct: 685 LYRGVENGFVPNDVTWNILVYNFGKQSNSEGQTI 718



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 124/486 (25%), Positives = 237/486 (48%), Gaps = 47/486 (9%)

Query: 13  AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVR 72
           A  +F+DM S+G  PN  ++  ++   C   E+D A  +  +M   G +PNS+ Y  L+ 
Sbjct: 194 ASNVFYDMLSKGVSPNDYTFGLVMKALCMVNEVDNACLLLRDMTKHGCVPNSMIYQTLID 253

Query: 73  GVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQ 132
            + +   V+ A  L+ +++  M    D++     F  ++   CR   V E  ++ + M  
Sbjct: 254 ALSKRDRVDEALKLLEEMF-LMGCPPDVN----TFNTVIYGFCRLNRVLEGAKLVDRMIL 308

Query: 133 GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMR 192
                 +   G+++  LC++ R   A  ++     +   P++V +N++V+G  ++G    
Sbjct: 309 KGFTPNDMTYGYLMHGLCKTCRIDEAQALL----SKVPGPNVVHFNTLVNGFVRNGRLNE 364

Query: 193 AYQLL-EEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYL 251
           A   + ++ I  GY+P   T+  LV GLC +     A +++  M +K             
Sbjct: 365 ATAFVYDKMINNGYVPDVFTFSTLVNGLCKKGLFGSALELVNDMDAKG------------ 412

Query: 252 RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC 311
                                  C+P++ T   +I+GFCK G++EEA  +L +M+   F 
Sbjct: 413 -----------------------CKPNLNTYTILIDGFCKKGQLEEAGLILREMLTKGF- 448

Query: 312 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK 371
           + + V +  +I  L   G+I EAL++  + M  +G  P I T+N+++ GL R+  +E+A 
Sbjct: 449 SLNTVGYNALISALCKHGKIHEALDMFGE-MSSKGCKPDIFTFNSLIFGLCRVDEMEDAL 507

Query: 372 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 431
            ++  M+  GV+A+S T+  +I       ++ EA +  +D+++     D   Y  +IK L
Sbjct: 508 ALYRDMVLEGVIANSVTFNTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEITYNGLIKAL 567

Query: 432 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 491
           C++G + + +    E++  G+TP+I+  N++I+G C       A + +R+M   G +PD 
Sbjct: 568 CKTGAVEKGLGLFEEMIRKGLTPSIITCNILINGFCTAGKVHNALEFMRDMIHRGFSPDI 627

Query: 492 VTWRIL 497
           VT+  L
Sbjct: 628 VTYNSL 633


>gi|302818229|ref|XP_002990788.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
 gi|300141349|gb|EFJ08061.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
          Length = 624

 Score =  223 bits (567), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 136/444 (30%), Positives = 244/444 (54%), Gaps = 18/444 (4%)

Query: 62  PNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVN 121
           P++ T+++L+RG+ R+  +E+A     +L  RMKE   +  ++A +  L+    +     
Sbjct: 8   PDAFTFAILLRGLCRSNQLEKAR----QLLGRMKEMGCVP-DDAIYNALISGYSKAKDFG 62

Query: 122 EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
           + F+   +M +   +       +++D LC++GR   A +++  MR +G +P++ +YN IV
Sbjct: 63  QAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNVIV 122

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD- 240
            GLC+      A ++LEE    GY P   TY   ++GLC    +++ARK L  M    D 
Sbjct: 123 EGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMPVTPDV 182

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           V  T + N     LC   +      +L  M    C PDV+T +++I+GFCK G +E A+ 
Sbjct: 183 VSYTTVIN----GLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERAMG 238

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +L+ M+    C P+ V + +++  L  +G I +A ++L + M +RG++P +V+YNA + G
Sbjct: 239 LLDSMLKLG-CRPNMVAYNSLLGALHRLGHIGKAEDMLVE-MERRGFTPDVVSYNACIDG 296

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L +  RV++AK VF+ M+  G   ++++Y+++++ LC+  +LD+A    +       I D
Sbjct: 297 LCKAERVKKAKAVFDRMVERGCTPNASSYSMLVEELCKKKELDDAITLVEQAREKYQIVD 356

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGV-TPNIVCYNVVIDGACKLSMKREAYQIL 479
             +Y  ++ GLC+ G+  EA     +++D  +  P++  YNV++D  CK     +A QI 
Sbjct: 357 ILLYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIH 416

Query: 480 REM-RKNGLNPDAVTWRILDKLHG 502
           ++M  +N  N   VTW IL  +HG
Sbjct: 417 KQMLERNCCN--VVTWNIL--VHG 436



 Score =  191 bits (485), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 133/503 (26%), Positives = 237/503 (47%), Gaps = 18/503 (3%)

Query: 11  GEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVL 70
           G+A K   +M     +P VV+YT ++ G C+ G    A K+ DEMR  G  PN  TY+V+
Sbjct: 62  GQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNVI 121

Query: 71  VRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDM 130
           V G+   R ++ A  ++ ++  R    + ++ N     + +  LC+   V+E  +    M
Sbjct: 122 VEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYN-----SFIKGLCKCDRVDEARKFLARM 176

Query: 131 PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGC 190
           P    V    +   +I+ LC+SG    ASR++  M  RG TP +V+Y+S++ G CK G  
Sbjct: 177 PVTPDV---VSYTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEV 233

Query: 191 MRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIY 250
            RA  LL+  ++ G  P+   Y  L+  L     + KA  +L  M  +         N  
Sbjct: 234 ERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNAC 293

Query: 251 LRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKF 310
           +  LC  +   +   V   M++  C P+  + + ++   CK   +++A+  L +    K+
Sbjct: 294 IDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLVEELCKKKELDDAI-TLVEQAREKY 352

Query: 311 CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEA 370
              D + +T ++ GL   GR  EA  L  +V+ ++   P +  YN +L    + R++++A
Sbjct: 353 QIVDILLYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKA 412

Query: 371 KEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKG 430
            ++   ML      +  T+ I++ GLC  ++L +A+     +V    I D   Y  ++  
Sbjct: 413 LQIHKQMLERN-CCNVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDA 471

Query: 431 LCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD 490
           +C+ GK   A+    E V  G  P++V Y+ +I G    +M  EAY +  ++       D
Sbjct: 472 MCKCGKSAAALELFEEAVKGGCVPDVVTYSALITGLVHENMAEEAYLLFTKL-------D 524

Query: 491 AVTWRILDKLHGNRGN-DFGLRI 512
              W  +   +   G+ D GL++
Sbjct: 525 VALWNAMILGYAENGSGDLGLKL 547



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 137/498 (27%), Positives = 240/498 (48%), Gaps = 18/498 (3%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC  +++ +A +L   MK  G VP+   Y  LI GY +  +   A+K   EM     LP 
Sbjct: 20  LCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPT 79

Query: 64  SLTYSVLVRGVL---RTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            +TY+ +V G+    RT+D         KL + M+ ++  S N   +  +V+ LC E  +
Sbjct: 80  VVTYTNIVDGLCKAGRTKDA-------VKLLDEMR-DKGCSPNIYTYNVIVEGLCEERKL 131

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E  ++ E+M       +       I  LC+  R   A + +  M    +TP +VSY ++
Sbjct: 132 DEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMP---VTPDVVSYTTV 188

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++GLCK G    A ++L++    G  P   TY  L++G C   ++E+A  +L  ML    
Sbjct: 189 INGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGC 248

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                  N  L AL  + +  +  ++LV M +    PDV++ N  I+G CK  R+++A  
Sbjct: 249 RPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKA 308

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           V + MV  + C P+A +++ ++  L     + +A+ L+ Q   ++     I+ Y  +L G
Sbjct: 309 VFDRMVE-RGCTPNASSYSMLVEELCKKKELDDAITLVEQAR-EKYQIVDILLYTVLLDG 366

Query: 361 LFRLRRVEEAKEVFNCMLGIGVV-ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
           L +  R +EA  +F+ +L   +   D   Y +++D  C+  Q+D+A +    ++   N  
Sbjct: 367 LCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQML-ERNCC 425

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           +   +  ++ GLC   ++ +A   L  +VD G  P+ V Y  ++D  CK      A ++ 
Sbjct: 426 NVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELF 485

Query: 480 REMRKNGLNPDAVTWRIL 497
            E  K G  PD VT+  L
Sbjct: 486 EEAVKGGCVPDVVTYSAL 503



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 126/489 (25%), Positives = 230/489 (47%), Gaps = 20/489 (4%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   ++ EA K+  +M  RG+ P+VV+Y + I G C+   +D A K    M    V P+
Sbjct: 125 LCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMP---VTPD 181

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            ++Y+ ++ G+ ++ D++ A+ ++ ++  R       + +   +++L+D  C+ G V   
Sbjct: 182 VVSYTTVINGLCKSGDLDSASRMLDQMTNR-----GCTPDVVTYSSLIDGFCKGGEVERA 236

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             + + M +        A   ++ +L R G    A  ++  M +RG TP +VSYN+ + G
Sbjct: 237 MGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDG 296

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LCK     +A  + +  ++ G  P+  +Y +LVE LC + +L+ A  +++    K  +  
Sbjct: 297 LCKAERVKKAKAVFDRMVERGCTPNASSYSMLVEELCKKKELDDAITLVEQAREKYQIVD 356

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQ-CQPDVITLNTVINGFCKMGRIEEALKVL 302
             +  + L  LC      E   +   +L  + C+PDV   N +++  CK  +I++AL++ 
Sbjct: 357 ILLYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIH 416

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
             M+    C  + VT+  ++ GL    R+ +A  +L   M   G+ P  VTY  ++  + 
Sbjct: 417 KQMLERNCC--NVVTWNILVHGLCVDDRLSDAETMLL-TMVDEGFIPDFVTYGTLVDAMC 473

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
           +  +   A E+F   +  G V D  TY+ +I GL   N  +EA   +  +       D  
Sbjct: 474 KCGKSAAALELFEEAVKGGCVPDVVTYSALITGLVHENMAEEAYLLFTKL-------DVA 526

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA-CKLSMKREAYQILRE 481
           ++ AMI G   +G     +    EL++S V PN   +   I G   K     +A  +   
Sbjct: 527 LWNAMILGYAENGSGDLGLKLFVELIESDVEPNARTFGKEISGKLVKAESLGKARGLFDR 586

Query: 482 MRKNGLNPD 490
             K G  PD
Sbjct: 587 AVKGGFFPD 595



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 95/330 (28%), Positives = 157/330 (47%), Gaps = 40/330 (12%)

Query: 165 MRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESD 224
           M  +   P   ++  ++ GLC+     +A QLL    + G +P +  Y  L+ G     D
Sbjct: 1   MIDKSCQPDAFTFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKD 60

Query: 225 LEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNT 284
             +A K                                    L  M++  C P V+T   
Sbjct: 61  FGQAFK-----------------------------------FLAEMVKNHCLPTVVTYTN 85

Query: 285 VINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ 344
           +++G CK GR ++A+K+L++M   K C+P+  T+  I+ GL    ++ EA  +L + M  
Sbjct: 86  IVDGLCKAGRTKDAVKLLDEM-RDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEE-MAV 143

Query: 345 RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 404
           RGY P +VTYN+ ++GL +  RV+EA++    M    V  D  +Y  VI+GLC+S  LD 
Sbjct: 144 RGYFPDVVTYNSFIKGLCKCDRVDEARKFLARM---PVTPDVVSYTTVINGLCKSGDLDS 200

Query: 405 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
           A R  D +       D   Y+++I G C+ G++  A+  L  ++  G  PN+V YN ++ 
Sbjct: 201 ASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLG 260

Query: 465 GACKLSMKREAYQILREMRKNGLNPDAVTW 494
              +L    +A  +L EM + G  PD V++
Sbjct: 261 ALHRLGHIGKAEDMLVEMERRGFTPDVVSY 290



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/233 (21%), Positives = 91/233 (39%), Gaps = 48/233 (20%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R+ +A  +   M   G +P+ V+Y TL+   C+ G+   A ++F+E    G +P+
Sbjct: 437 LCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVKGGCVPD 496

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TYS L+ G++     E A +L  KL        D+++ NA                  
Sbjct: 497 VVTYSALITGLVHENMAEEAYLLFTKL--------DVALWNA------------------ 530

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
                                MI     +G      ++   + +  + P+  ++   + G
Sbjct: 531 ---------------------MILGYAENGSGDLGLKLFVELIESDVEPNARTFGKEISG 569

Query: 184 -LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM 235
            L K     +A  L +  ++ G+ P       L++      DLE+AR++   M
Sbjct: 570 KLVKAESLGKARGLFDRAVKGGFFPDLFVANTLIDVFAKCGDLEEARRIFYSM 622


>gi|15221691|ref|NP_176501.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169915|sp|Q9CAN0.1|PPR99_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63130, mitochondrial; Flags: Precursor
 gi|12323261|gb|AAG51613.1|AC010795_17 unknown protein; 64081-65973 [Arabidopsis thaliana]
 gi|22136016|gb|AAM91590.1| unknown protein [Arabidopsis thaliana]
 gi|23197834|gb|AAN15444.1| unknown protein [Arabidopsis thaliana]
 gi|332195938|gb|AEE34059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  223 bits (567), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 139/503 (27%), Positives = 247/503 (49%), Gaps = 42/503 (8%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C  S++  A  +   M   G+ P++V+  +L++G+C    +  A  +  +M   G  P+
Sbjct: 126 FCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPD 185

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           S T++ L+ G+ R      A  L+ ++  +   + DL      +  +V+ LC+ G ++  
Sbjct: 186 SFTFNTLIHGLFRHNRASEAVALVDRMVVK-GCQPDL----VTYGIVVNGLCKRGDIDLA 240

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             + + M QGK          +ID+LC     + A  +   M  +G+ P++V+YNS++  
Sbjct: 241 LSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRC 300

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LC +G    A +LL + I+    P+  T+  L++    E  L +A K+   M+ K+ +D 
Sbjct: 301 LCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMI-KRSID- 358

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                                            PD+ T +++INGFC   R++EA K + 
Sbjct: 359 ---------------------------------PDIFTYSSLINGFCMHDRLDEA-KHMF 384

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           +++  K C P+ VT+ T+I G     R+ E + L ++ M QRG     VTY  ++ G F+
Sbjct: 385 ELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMEL-FREMSQRGLVGNTVTYTTLIHGFFQ 443

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
            R  + A+ VF  M+  GV+ D  TY+I++DGLC + +++ A   ++ +       D Y 
Sbjct: 444 ARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYT 503

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y  MI+G+C++GK+ +       L   GV PN+V Y  ++ G C+  +K EA  + REM+
Sbjct: 504 YNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMK 563

Query: 484 KNGLNPDAVTWRILDKLHGNRGN 506
           + G  PD+ T+  L + H   G+
Sbjct: 564 EEGPLPDSGTYNTLIRAHLRDGD 586



 Score =  198 bits (504), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 123/489 (25%), Positives = 243/489 (49%), Gaps = 7/489 (1%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           ++ +A  LF DM      P++V ++ L+    +  + D+   + ++M++ G+  N  TYS
Sbjct: 61  KLDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYS 120

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
           +L+    R   +  A  ++ K+ +   E + +++N+     L++  C    +++   +  
Sbjct: 121 ILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNS-----LLNGFCHGNRISDAVSLVG 175

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
            M +     + F    +I  L R  R   A  +V  M  +G  P LV+Y  +V+GLCK G
Sbjct: 176 QMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRG 235

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
               A  LL++  Q    P    Y  +++ LC   ++  A  +   M +K         N
Sbjct: 236 DIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYN 295

Query: 249 IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 308
             +R LC     ++   +L  M++ +  P+V+T + +I+ F K G++ EA K+ ++M+  
Sbjct: 296 SLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIK- 354

Query: 309 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE 368
           +   PD  T++++I G     R+ EA ++ +++M  +   P +VTYN +++G  + +RV+
Sbjct: 355 RSIDPDIFTYSSLINGFCMHDRLDEAKHM-FELMISKDCFPNVVTYNTLIKGFCKAKRVD 413

Query: 369 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI 428
           E  E+F  M   G+V ++ TY  +I G  ++ + D A+  +  +V    + D   Y+ ++
Sbjct: 414 EGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILL 473

Query: 429 KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLN 488
            GLC +GK+  A+     L  S + P+I  YN++I+G CK     + + +   +   G+ 
Sbjct: 474 DGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVK 533

Query: 489 PDAVTWRIL 497
           P+ VT+  +
Sbjct: 534 PNVVTYTTM 542



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 137/508 (26%), Positives = 237/508 (46%), Gaps = 49/508 (9%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C  +R+ +A  L   M   G+ P+  ++ TLIHG  R      A  + D M   G 
Sbjct: 158 LNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGC 217

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TY ++V G+ +  D++ A  L+ K+ E+ K E  + + N     ++D+LC    V
Sbjct: 218 QPDLVTYGIVVNGLCKRGDIDLALSLLKKM-EQGKIEPGVVIYNT----IIDALCNYKNV 272

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           N+   +  +M              +I  LC  GR   ASR++  M +R + P++V+++++
Sbjct: 273 NDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSAL 332

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +    K G  + A +L +E I+    P   TY  L+ G C    L++A+ + + M+SK  
Sbjct: 333 IDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISK-- 390

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                             C P+V+T NT+I GFCK  R++E ++
Sbjct: 391 ---------------------------------DCFPNVVTYNTLIKGFCKAKRVDEGME 417

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +  +M + +    + VT+TT+I G         A  ++++ M   G  P I+TY+ +L G
Sbjct: 418 LFREM-SQRGLVGNTVTYTTLIHGFFQARECDNA-QIVFKQMVSDGVLPDIMTYSILLDG 475

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS--NI 418
           L    +VE A  VF  +    +  D  TY I+I+G+C++ ++++    WD     S   +
Sbjct: 476 LCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDG---WDLFCSLSLKGV 532

Query: 419 HDNYV-YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQ 477
             N V Y  M+ G CR G   EA     E+ + G  P+   YN +I    +   K  + +
Sbjct: 533 KPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASAE 592

Query: 478 ILREMRKNGLNPDAVTWRIL-DKLHGNR 504
           ++REMR      DA T  ++ + LH  R
Sbjct: 593 LIREMRSCRFVGDASTIGLVTNMLHDGR 620



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 110/396 (27%), Positives = 185/396 (46%), Gaps = 39/396 (9%)

Query: 107 FANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMR 166
           F+ L+ ++ +    + V  + E M      +  +    +I+  CR  +   A  V+  M 
Sbjct: 84  FSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFCRRSQLSLALAVLAKMM 143

Query: 167 KRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLE 226
           K G  P +V+ NS+++G C       A  L+ + ++ GY P   T+  L+ GL   +   
Sbjct: 144 KLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRAS 203

Query: 227 KARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVI 286
           +A  +         VDR                          M+   CQPD++T   V+
Sbjct: 204 EAVAL---------VDR--------------------------MVVKGCQPDLVTYGIVV 228

Query: 287 NGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
           NG CK G I+ AL +L  M  GK   P  V + TII  L N   + +ALNL  + M  +G
Sbjct: 229 NGLCKRGDIDLALSLLKKMEQGKI-EPGVVIYNTIIDALCNYKNVNDALNLFTE-MDNKG 286

Query: 347 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
             P +VTYN+++R L    R  +A  + + M+   +  +  T++ +ID   +  +L EA+
Sbjct: 287 IRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAE 346

Query: 407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466
           + +D+++  S   D + Y+++I G C   ++ EA H    ++     PN+V YN +I G 
Sbjct: 347 KLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGF 406

Query: 467 CKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
           CK     E  ++ REM + GL  + VT+  L  +HG
Sbjct: 407 CKAKRVDEGMELFREMSQRGLVGNTVTYTTL--IHG 440



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 117/244 (47%), Gaps = 2/244 (0%)

Query: 262 ELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTI 321
           + +N+   M++++  P ++  + +++   KM + +  +  L + +     + +  T++ +
Sbjct: 64  DAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVIS-LGEQMQNLGISHNLYTYSIL 122

Query: 322 IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG 381
           I       ++  AL +L ++M + GY P IVT N++L G     R+ +A  +   M+ +G
Sbjct: 123 INCFCRRSQLSLALAVLAKMM-KLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMG 181

Query: 382 VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAV 441
              DS T+  +I GL   N+  EA    D +V      D   Y  ++ GLC+ G I  A+
Sbjct: 182 YQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLAL 241

Query: 442 HFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLH 501
             L ++    + P +V YN +ID  C      +A  +  EM   G+ P+ VT+  L +  
Sbjct: 242 SLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCL 301

Query: 502 GNRG 505
            N G
Sbjct: 302 CNYG 305


>gi|297843788|ref|XP_002889775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335617|gb|EFH66034.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score =  223 bits (567), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 132/498 (26%), Positives = 254/498 (51%), Gaps = 10/498 (2%)

Query: 3   QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           QL     + E  K   +M   G+VP+++  TTLI G+CR G+   A K+ + +   G +P
Sbjct: 111 QLVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRMGKTRKAAKILEVLEGSGAVP 170

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           + +TY+V++ G  +  ++  A      + +RM    D+      +  ++ SLC  G + +
Sbjct: 171 DVITYNVMISGYCKAGEINNA----LSVLDRMSVSPDV----VTYNTILRSLCDSGKLKQ 222

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
              + + M Q     +      +I++ CR      A +++  MR RG TP +V+YN +V+
Sbjct: 223 AMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVN 282

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           G+CK G    A + L +    G  P+  T+ +++  +C       A K+L  ML K    
Sbjct: 283 GICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSP 342

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
                NI +  LC        +++L  M +  CQP+ ++ N +++GFCK  +++ A++ L
Sbjct: 343 SVVTFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYL 402

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
             MV+ + C PD VT+ T++  L   G++++A+ +L Q +  +G SP ++TYN V+ GL 
Sbjct: 403 ERMVS-RGCYPDIVTYNTMLTALCKDGKVEDAVEILNQ-LSSKGCSPVLITYNTVIDGLA 460

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
           +  +  +A ++ + M    +  D+ TY+ ++ GL    ++DEA +F+ +        +  
Sbjct: 461 KAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGVRPNAV 520

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
            + +++ GLC++ +   A+ FL  +++ G  P    Y ++I+G     M +EA ++L E+
Sbjct: 521 TFNSIMLGLCKTRQTDRAIDFLVYMINRGCKPTETSYTILIEGLAYEGMAKEALELLNEL 580

Query: 483 RKNGLNPDAVTWRILDKL 500
              GL   +   ++  K+
Sbjct: 581 CNKGLMKRSSAEQVAGKM 598



 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 121/400 (30%), Positives = 201/400 (50%), Gaps = 10/400 (2%)

Query: 98  EDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHG 157
           ED+  NN      +  L R G + E F+  E+M    +V +   C  +I   CR G+   
Sbjct: 101 EDVESNNH-----LRQLVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRMGKTRK 155

Query: 158 ASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVE 217
           A++++ V+   G  P +++YN ++ G CK G    A  +L+   +    P   TY  ++ 
Sbjct: 156 AAKILEVLEGSGAVPDVITYNVMISGYCKAGEINNALSVLD---RMSVSPDVVTYNTILR 212

Query: 218 GLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQP 277
            LC    L++A +VL  ML +          I + A C      + + +L  M    C P
Sbjct: 213 SLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTP 272

Query: 278 DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNL 337
           DV+T N ++NG CK GR++EA+K LNDM +   C P+ +T   I+  + + GR  +A  L
Sbjct: 273 DVVTYNVLVNGICKEGRLDEAIKFLNDMPSSG-CQPNVITHNIILRSMCSTGRWMDAEKL 331

Query: 338 LYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLC 397
           L  ++ ++G+SP +VT+N ++  L R   +  A ++   M   G   +S +Y  ++ G C
Sbjct: 332 LADML-RKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFC 390

Query: 398 ESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIV 457
           +  ++D A  + + +V      D   Y  M+  LC+ GK+ +AV  L +L   G +P ++
Sbjct: 391 KEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLI 450

Query: 458 CYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            YN VIDG  K     +A ++L EMR   L PD +T+  L
Sbjct: 451 TYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSL 490



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 102/392 (26%), Positives = 175/392 (44%), Gaps = 42/392 (10%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C  S VG+A KL  +M+ RG  P+VV+Y  L++G C+ G +D A K  ++M   G 
Sbjct: 246 IEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGC 305

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +T+++++R +  T     A  L+  +  +       S +   F  L++ LCR+G +
Sbjct: 306 QPNVITHNIILRSMCSTGRWMDAEKLLADMLRK-----GFSPSVVTFNILINFLCRKGLL 360

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                I E MP                                   K G  P+ +SYN +
Sbjct: 361 GRAIDILEKMP-----------------------------------KHGCQPNSLSYNPL 385

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +HG CK     RA + LE  +  G  P   TY  ++  LC +  +E A ++L  + SK  
Sbjct: 386 LHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGC 445

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                  N  +  L       + + +L  M     +PD IT ++++ G  + G+++EA+K
Sbjct: 446 SPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIK 505

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
             ++        P+AVTF +I+ GL    +   A++ L   M  RG  P   +Y  ++ G
Sbjct: 506 FFHEF-ERMGVRPNAVTFNSIMLGLCKTRQTDRAIDFLV-YMINRGCKPTETSYTILIEG 563

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIV 392
           L      +EA E+ N +   G++  S+   + 
Sbjct: 564 LAYEGMAKEALELLNELCNKGLMKRSSAEQVA 595


>gi|297849642|ref|XP_002892702.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338544|gb|EFH68961.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 667

 Score =  223 bits (567), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 138/487 (28%), Positives = 246/487 (50%), Gaps = 42/487 (8%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M+  G   N+ +   +I+ +CR  +   AY V  ++   G  P++ T++ L+ G+     
Sbjct: 91  MELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLESK 150

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
           V  A VL+ ++ E   +      N   + ++V+ +C+ G  +    +   M +     + 
Sbjct: 151 VSEAVVLVARMVENGCQP-----NVVTYNSIVNGICKSGDTSLALDLLRKMDERNVKADV 205

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
           F    +IDSLCR G    A  +   M  +G+  SLV+YNS+V GLCK G      QLL++
Sbjct: 206 FTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKD 265

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
                 +P+  T+ VL++    E  L++A ++ + M++K                     
Sbjct: 266 MTSRKIIPNVITFNVLIDVFVKEGKLQEANELYKEMITK--------------------- 304

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
                            P+ IT N++++G+C   R+ EA  +L+ MV    C+PD VTFT
Sbjct: 305 --------------GISPNTITYNSLMDGYCMQNRLSEANNMLDLMVRNN-CSPDIVTFT 349

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
           ++I G   V R+ E + L ++ + +RG     VTY+ +++G  +  ++E A+E+F  M+ 
Sbjct: 350 SLIKGYCKVKRVDEGMKL-FRKISKRGLVANTVTYSILVQGFCQSGKLEIAEELFQEMVS 408

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
           +GV+ D  TY I++DGLC++ +L++A   ++D+       D  +Y  +I+G+C+ GK+ +
Sbjct: 409 LGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMNLDIVMYTIIIEGMCKGGKVED 468

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
           A +    L   GV PN++ Y V+I G CK     EA  +LR+M ++G  P+  T+  L +
Sbjct: 469 AWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNEPNDCTYNTLIR 528

Query: 500 LHGNRGN 506
            H   G+
Sbjct: 529 AHLRDGD 535



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 106/464 (22%), Positives = 207/464 (44%), Gaps = 42/464 (9%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC  S+V EA  L   M   G  PNVV+Y ++++G C++G+  +A  +  +M    V
Sbjct: 142 INGLCLESKVSEAVVLVARMVENGCQPNVVTYNSIVNGICKSGDTSLALDLLRKMDERNV 201

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             +  TYS ++  + R   ++ A      L++ M E + +  +   + +LV  LC+ G  
Sbjct: 202 KADVFTYSTIIDSLCRDGCIDAA----ISLFKEM-ETKGIKSSLVTYNSLVGGLCKAGKW 256

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           N+  ++ +DM   K +        +ID   + G+   A+ +   M  +G++P+ ++YNS+
Sbjct: 257 NDGVQLLKDMTSRKIIPNVITFNVLIDVFVKEGKLQEANELYKEMITKGISPNTITYNSL 316

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G C       A  +L+  ++    P   T+  L++G C    +++  K+ + +  +  
Sbjct: 317 MDGYCMQNRLSEANNMLDLMVRNNCSPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGL 376

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           V  T   +I ++  C          +   M+     PDV+T   +++G C  G++E+AL+
Sbjct: 377 VANTVTYSILVQGFCQSGKLEIAEELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALE 436

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +  D+   K    D V +T II G+   G++++A N L+  +P +G  P ++TY      
Sbjct: 437 IFEDLQKSKM-NLDIVMYTIIIEGMCKGGKVEDAWN-LFCSLPCKGVKPNVMTY------ 488

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
                                         ++I GLC+   L EA      +    N  +
Sbjct: 489 -----------------------------TVMISGLCKKGSLSEANILLRKMEEDGNEPN 519

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
           +  Y  +I+   R G +  +   + E+   G + +     +VID
Sbjct: 520 DCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVID 563



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 97/396 (24%), Positives = 189/396 (47%), Gaps = 42/396 (10%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    +  A  LF +M+++G   ++V+Y +L+ G C+ G+ +   ++  +M    +
Sbjct: 212 IDSLCRDGCIDAAISLFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKI 271

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +PN +T++VL+   ++   ++ AN    +L++ M  +  +S N   + +L+D  C +  +
Sbjct: 272 IPNVITFNVLIDVFVKEGKLQEAN----ELYKEMITK-GISPNTITYNSLMDGYCMQNRL 326

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E   + + M +     +      +I   C+  R     ++   + KRGL  + V+Y+ +
Sbjct: 327 SEANNMLDLMVRNNCSPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSIL 386

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           V G C+ G    A +L +E +  G LP   TY +L++GLC    LEKA ++ +      D
Sbjct: 387 VQGFCQSGKLEIAEELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFE------D 440

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           + ++++                               D++    +I G CK G++E+A  
Sbjct: 441 LQKSKM-----------------------------NLDIVMYTIIIEGMCKGGKVEDAWN 471

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +   +   K   P+ +T+T +I GL   G + EA N+L + M + G  P   TYN ++R 
Sbjct: 472 LFCSLPC-KGVKPNVMTYTVMISGLCKKGSLSEA-NILLRKMEEDGNEPNDCTYNTLIRA 529

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 396
             R   +  + ++   M   G  AD+++  +VID L
Sbjct: 530 HLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDML 565



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 91/185 (49%), Gaps = 6/185 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   ++ +A ++F D++      ++V YT +I G C+ G+++ A+ +F  +   GV
Sbjct: 422 LDGLCDNGKLEKALEIFEDLQKSKMNLDIVMYTIIIEGMCKGGKVEDAWNLFCSLPCKGV 481

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +TY+V++ G+ +   +  AN+L+ K+ E   E  D + N    A+L     R+G +
Sbjct: 482 KPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNEPNDCTYNTLIRAHL-----RDGDL 536

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRS-GRNHGASRVVYVMRKRGLTPSLVSYNS 179
               ++ E+M       +  +   +ID L  +        R   V R RG    L+ +N+
Sbjct: 537 TASAKLIEEMKSCGFSADASSIKMVIDMLSSAVWWFKEPRRSPGVKRFRGTQAYLMPFNT 596

Query: 180 IVHGL 184
           I   L
Sbjct: 597 ITASL 601



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 63/149 (42%)

Query: 346 GYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA 405
           G S G V Y   LR      + ++A ++F  M+    +     ++    G+  + Q +  
Sbjct: 25  GISDGRVCYGERLRSGIVDIKEDDAIDLFQEMIRSRPLPSLVDFSRFFSGVASTKQFNLV 84

Query: 406 KRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDG 465
             F   +      H+ Y    MI   CR  K   A   L +++  G  P+   +N +I+G
Sbjct: 85  LDFCKKMELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLING 144

Query: 466 ACKLSMKREAYQILREMRKNGLNPDAVTW 494
            C  S   EA  ++  M +NG  P+ VT+
Sbjct: 145 LCLESKVSEAVVLVARMVENGCQPNVVTY 173


>gi|255540069|ref|XP_002511099.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550214|gb|EEF51701.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1151

 Score =  221 bits (564), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 148/568 (26%), Positives = 262/568 (46%), Gaps = 76/568 (13%)

Query: 8   SRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTY 67
           S +G A ++  +M +R    N  +Y  LIHG C+ G+++ A  +F EM   G+ P+  TY
Sbjct: 351 SDIGGAFQVKEEMFARKIKLNTFTYYALIHGLCKIGDLEKAEDLFSEMTMMGIKPDIQTY 410

Query: 68  SVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIA 127
           + L+ G  + +++E+A  L+ ++     ++E+L+ N      +V+ LC  G +     + 
Sbjct: 411 NCLIEGYYKVQNMEKAYELLIEI-----KKENLTANAYMCGAIVNGLCHCGDLTRANELF 465

Query: 128 EDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKH 187
           ++M              ++  L + GR   A +++ VM+ +GL+P +  YN+++ G CK 
Sbjct: 466 QEMISWGLKPNIVIYTTIVKGLVKEGRFEEAIKILGVMKDQGLSPDVFCYNTVIIGFCKA 525

Query: 188 GGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC 247
           G        L E I  G  P+ +TY   + G C   +++ A +    ML         IC
Sbjct: 526 GKMEEGKSYLVEMIAKGLKPNVYTYGAFIHGYCRAGEMQAAERSFIEMLDSGIAPNDVIC 585

Query: 248 NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA 307
              +   C   N T+       ML     PDV T + +I+G  K G+++EA+ V ++++ 
Sbjct: 586 TDLIDGYCKDGNTTKAFAKFRCMLDQGVLPDVQTHSVLIHGLSKNGKLQEAMGVFSELL- 644

Query: 308 GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRV 367
            K   PD  T+T++I  L   G ++ A  L +  M ++G +P IVTYNA++ GL +L  +
Sbjct: 645 DKGLVPDVFTYTSLISNLCKEGDLKAAFEL-HDDMCKKGINPNIVTYNALINGLCKLGEI 703

Query: 368 EEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAM 427
            +A+E+F+ +   G+  +S TY+ +I G C+S  L EA + +  +       D++VY A+
Sbjct: 704 AKARELFDGIPEKGLARNSVTYSTIIAGYCKSANLTEAFQLFHGMKLVGVPPDSFVYCAL 763

Query: 428 IKGLCRSG----------------------------------KIHEAVHFLYELVDSGVT 453
           I G C++G                                  K+ EA   + ++VD+ +T
Sbjct: 764 IDGCCKAGNTEKALSLFLGMVEEGIASTPAFNALIDGFFKLGKLIEAYQLVEDMVDNHIT 823

Query: 454 PNIVCYNVVIDGACKLSMKREAYQILREMRKN---------------------------- 485
           PN V Y ++I+  C +   +EA Q+  EM+K                             
Sbjct: 824 PNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNVMPNVLTYTSLLHGYNRIGRRSEMFSL 883

Query: 486 -------GLNPDAVTWRILDKLHGNRGN 506
                  G+ PD + W ++   H   GN
Sbjct: 884 FDEMVARGIKPDDLAWSVMVDAHLKEGN 911



 Score =  221 bits (562), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 153/575 (26%), Positives = 263/575 (45%), Gaps = 82/575 (14%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC    V EA +L   M ++G +P+   Y TLI G+CR         + DEM   G+ P+
Sbjct: 277 LCRAGDVDEALELKRSMANKGLLPDNYIYATLIDGFCRQKRSTEGKSMLDEMYTMGLKPD 336

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCR------- 116
            + Y+ L+ G ++  D+  A    F++ E M   + + +N   +  L+  LC+       
Sbjct: 337 HVAYTALINGFVKQSDIGGA----FQVKEEMFARK-IKLNTFTYYALIHGLCKIGDLEKA 391

Query: 117 -----------------------EGY-----VNEVFRIAEDMPQGKSVNEEFACGHMIDS 148
                                  EGY     + + + +  ++ +       + CG +++ 
Sbjct: 392 EDLFSEMTMMGIKPDIQTYNCLIEGYYKVQNMEKAYELLIEIKKENLTANAYMCGAIVNG 451

Query: 149 LC-----------------------------------RSGRNHGASRVVYVMRKRGLTPS 173
           LC                                   + GR   A +++ VM+ +GL+P 
Sbjct: 452 LCHCGDLTRANELFQEMISWGLKPNIVIYTTIVKGLVKEGRFEEAIKILGVMKDQGLSPD 511

Query: 174 LVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQ 233
           +  YN+++ G CK G        L E I  G  P+ +TY   + G C   +++ A +   
Sbjct: 512 VFCYNTVIIGFCKAGKMEEGKSYLVEMIAKGLKPNVYTYGAFIHGYCRAGEMQAAERSFI 571

Query: 234 FMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMG 293
            ML         IC   +   C   N T+       ML     PDV T + +I+G  K G
Sbjct: 572 EMLDSGIAPNDVICTDLIDGYCKDGNTTKAFAKFRCMLDQGVLPDVQTHSVLIHGLSKNG 631

Query: 294 RIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVT 353
           +++EA+ V ++++  K   PD  T+T++I  L   G ++ A   L+  M ++G +P IVT
Sbjct: 632 KLQEAMGVFSELL-DKGLVPDVFTYTSLISNLCKEGDLKAAFE-LHDDMCKKGINPNIVT 689

Query: 354 YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413
           YNA++ GL +L  + +A+E+F+ +   G+  +S TY+ +I G C+S  L EA + +  + 
Sbjct: 690 YNALINGLCKLGEIAKARELFDGIPEKGLARNSVTYSTIIAGYCKSANLTEAFQLFHGMK 749

Query: 414 WPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGV--TPNIVCYNVVIDGACKLSM 471
                 D++VY A+I G C++G   +A+     +V+ G+  TP    +N +IDG  KL  
Sbjct: 750 LVGVPPDSFVYCALIDGCCKAGNTEKALSLFLGMVEEGIASTP---AFNALIDGFFKLGK 806

Query: 472 KREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
             EAYQ++ +M  N + P+ VT+ IL + H   GN
Sbjct: 807 LIEAYQLVEDMVDNHITPNHVTYTILIEYHCTVGN 841



 Score =  215 bits (548), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 135/497 (27%), Positives = 241/497 (48%), Gaps = 7/497 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C + +V E   + FDM+ +G +PN+V+Y+ +I G CR G++D A ++   M + G+
Sbjct: 239 INAYCRVGKVEEGKHVLFDMEEKGCIPNLVTYSVVIAGLCRAGDVDEALELKRSMANKGL 298

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           LP++  Y+ L+ G  R +       ++ +++        L  ++ A+  L++   ++  +
Sbjct: 299 LPDNYIYATLIDGFCRQKRSTEGKSMLDEMYTM-----GLKPDHVAYTALINGFVKQSDI 353

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
              F++ E+M   K     F    +I  LC+ G    A  +   M   G+ P + +YN +
Sbjct: 354 GGAFQVKEEMFARKIKLNTFTYYALIHGLCKIGDLEKAEDLFSEMTMMGIKPDIQTYNCL 413

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G  K     +AY+LL E  +     + +    +V GLC   DL +A ++ Q M+S   
Sbjct: 414 IEGYYKVQNMEKAYELLIEIKKENLTANAYMCGAIVNGLCHCGDLTRANELFQEMISWGL 473

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                I    ++ L       E + +L  M      PDV   NTVI GFCK G++EE   
Sbjct: 474 KPNIVIYTTIVKGLVKEGRFEEAIKILGVMKDQGLSPDVFCYNTVIIGFCKAGKMEEGKS 533

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
            L +M+A K   P+  T+   I G    G +Q A     + M   G +P  V    ++ G
Sbjct: 534 YLVEMIA-KGLKPNVYTYGAFIHGYCRAGEMQAAERSFIE-MLDSGIAPNDVICTDLIDG 591

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
             +     +A   F CML  GV+ D  T++++I GL ++ +L EA   + +++    + D
Sbjct: 592 YCKDGNTTKAFAKFRCMLDQGVLPDVQTHSVLIHGLSKNGKLQEAMGVFSELLDKGLVPD 651

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
            + Y ++I  LC+ G +  A     ++   G+ PNIV YN +I+G CKL    +A ++  
Sbjct: 652 VFTYTSLISNLCKEGDLKAAFELHDDMCKKGINPNIVTYNALINGLCKLGEIAKARELFD 711

Query: 481 EMRKNGLNPDAVTWRIL 497
            + + GL  ++VT+  +
Sbjct: 712 GIPEKGLARNSVTYSTI 728



 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 127/507 (25%), Positives = 220/507 (43%), Gaps = 77/507 (15%)

Query: 26  VPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANV 85
           VP+V +YT LI+ YCR G+++    V  +M   G +PN +TYSV++ G            
Sbjct: 229 VPDVYTYTNLINAYCRVGKVEEGKHVLFDMEEKGCIPNLVTYSVVIAG------------ 276

Query: 86  LMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHM 145
                                       LCR G V+E   +   M     + + +    +
Sbjct: 277 ----------------------------LCRAGDVDEALELKRSMANKGLLPDNYIYATL 308

Query: 146 IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY 205
           ID  CR  R+     ++  M   GL P  V+Y ++++G  K      A+Q+ EE      
Sbjct: 309 IDGFCRQKRSTEGKSMLDEMYTMGLKPDHVAYTALINGFVKQSDIGGAFQVKEEMFARKI 368

Query: 206 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 265
             +  TY  L+ GLC   DLEKA  +   M         +  N  +     ++N  +   
Sbjct: 369 KLNTFTYYALIHGLCKIGDLEKAEDLFSEMTMMGIKPDIQTYNCLIEGYYKVQNMEKAYE 428

Query: 266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 325
           +L+ + +     +      ++NG C  G +  A ++  +M++     P+ V +TTI+ GL
Sbjct: 429 LLIEIKKENLTANAYMCGAIVNGLCHCGDLTRANELFQEMISWGL-KPNIVIYTTIVKGL 487

Query: 326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 385
           +  GR +EA+ +L  VM  +G SP +  YN V+ G  +  ++EE K     M+  G+  +
Sbjct: 488 VKEGRFEEAIKIL-GVMKDQGLSPDVFCYNTVIIGFCKAGKMEEGKSYLVEMIAKGLKPN 546

Query: 386 STTYAIVIDGLCESNQLDEAKRFW----DDIVWPSNI----------------------- 418
             TY   I G C + ++  A+R +    D  + P+++                       
Sbjct: 547 VYTYGAFIHGYCRAGEMQAAERSFIEMLDSGIAPNDVICTDLIDGYCKDGNTTKAFAKFR 606

Query: 419 --------HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLS 470
                    D   ++ +I GL ++GK+ EA+    EL+D G+ P++  Y  +I   CK  
Sbjct: 607 CMLDQGVLPDVQTHSVLIHGLSKNGKLQEAMGVFSELLDKGLVPDVFTYTSLISNLCKEG 666

Query: 471 MKREAYQILREMRKNGLNPDAVTWRIL 497
             + A+++  +M K G+NP+ VT+  L
Sbjct: 667 DLKAAFELHDDMCKKGINPNIVTYNAL 693



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 128/493 (25%), Positives = 218/493 (44%), Gaps = 45/493 (9%)

Query: 10  VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSV 69
           + EA  +F   K+   +  +    +L     +   +++ +KV+  M    ++P+  TY+ 
Sbjct: 179 LNEAVSVFLGAKTNEFIVGLACCNSLSKDLLKGNRVELFWKVYKGMLG-AIVPDVYTYTN 237

Query: 70  LVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAED 129
           L+    R   VE    ++F +     EE+    N   ++ ++  LCR G V+E   +   
Sbjct: 238 LINAYCRVGKVEEGKHVLFDM-----EEKGCIPNLVTYSVVIAGLCRAGDVDEALELKRS 292

Query: 130 MPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG 189
           M     + + +    +ID  CR  R+     ++  M   GL P  V+Y ++++G  K   
Sbjct: 293 MANKGLLPDNYIYATLIDGFCRQKRSTEGKSMLDEMYTMGLKPDHVAYTALINGFVKQSD 352

Query: 190 CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNI 249
              A+Q+ EE        +  TY  L+ GLC   DLEKA                     
Sbjct: 353 IGGAFQVKEEMFARKIKLNTFTYYALIHGLCKIGDLEKAE-------------------- 392

Query: 250 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK 309
                          ++   M     +PD+ T N +I G+ K+  +E+A ++L ++    
Sbjct: 393 ---------------DLFSEMTMMGIKPDIQTYNCLIEGYYKVQNMEKAYELLIEIKKEN 437

Query: 310 FCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEE 369
             A +A     I+ GL + G +  A N L+Q M   G  P IV Y  +++GL +  R EE
Sbjct: 438 LTA-NAYMCGAIVNGLCHCGDLTRA-NELFQEMISWGLKPNIVIYTTIVKGLVKEGRFEE 495

Query: 370 AKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIK 429
           A ++   M   G+  D   Y  VI G C++ +++E K +  +++      + Y Y A I 
Sbjct: 496 AIKILGVMKDQGLSPDVFCYNTVIIGFCKAGKMEEGKSYLVEMIAKGLKPNVYTYGAFIH 555

Query: 430 GLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNP 489
           G CR+G++  A     E++DSG+ PN V    +IDG CK     +A+   R M   G+ P
Sbjct: 556 GYCRAGEMQAAERSFIEMLDSGIAPNDVICTDLIDGYCKDGNTTKAFAKFRCMLDQGVLP 615

Query: 490 DAVTWRILDKLHG 502
           D  T  +L  +HG
Sbjct: 616 DVQTHSVL--IHG 626



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 114/489 (23%), Positives = 226/489 (46%), Gaps = 10/489 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC    +  A++LF +M S G  PN+V YTT++ G  + G  + A K+   M+  G+
Sbjct: 449 VNGLCHCGDLTRANELFQEMISWGLKPNIVIYTTIVKGLVKEGRFEEAIKILGVMKDQGL 508

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+   Y+ ++ G  +   +E     + ++  +      L  N   +   +   CR G +
Sbjct: 509 SPDVFCYNTVIIGFCKAGKMEEGKSYLVEMIAK-----GLKPNVYTYGAFIHGYCRAGEM 563

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
               R   +M        +  C  +ID  C+ G    A      M  +G+ P + +++ +
Sbjct: 564 QAAERSFIEMLDSGIAPNDVICTDLIDGYCKDGNTTKAFAKFRCMLDQGVLPDVQTHSVL 623

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +HGL K+G    A  +  E +  G +P   TY  L+  LC E DL+ A ++   M  K  
Sbjct: 624 IHGLSKNGKLQEAMGVFSELLDKGLVPDVFTYTSLISNLCKEGDLKAAFELHDDMCKKGI 683

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                  N  +  LC +    +   +   + +     + +T +T+I G+CK   + EA +
Sbjct: 684 NPNIVTYNALINGLCKLGEIAKARELFDGIPEKGLARNSVTYSTIIAGYCKSANLTEAFQ 743

Query: 301 VLNDM-VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           + + M + G    PD+  +  +I G    G  ++AL+L +  M + G +     +NA++ 
Sbjct: 744 LFHGMKLVG--VPPDSFVYCALIDGCCKAGNTEKALSL-FLGMVEEGIA-STPAFNALID 799

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
           G F+L ++ EA ++   M+   +  +  TY I+I+  C    + EA++ + ++   + + 
Sbjct: 800 GFFKLGKLIEAYQLVEDMVDNHITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNVMP 859

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           +   Y +++ G  R G+  E      E+V  G+ P+ + ++V++D   K     +A +++
Sbjct: 860 NVLTYTSLLHGYNRIGRRSEMFSLFDEMVARGIKPDDLAWSVMVDAHLKEGNWIKALKLV 919

Query: 480 REMRKNGLN 488
            +M   G+N
Sbjct: 920 DDMLSEGVN 928



 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 130/536 (24%), Positives = 233/536 (43%), Gaps = 48/536 (8%)

Query: 9    RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
            R  EA K+   MK +G  P+V  Y T+I G+C+ G+M+       EM   G+ PN  TY 
Sbjct: 492  RFEEAIKILGVMKDQGLSPDVFCYNTVIIGFCKAGKMEEGKSYLVEMIAKGLKPNVYTYG 551

Query: 69   VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
              + G  R  +++ A     ++ +       ++ N+    +L+D  C++G   + F    
Sbjct: 552  AFIHGYCRAGEMQAAERSFIEMLD-----SGIAPNDVICTDLIDGYCKDGNTTKAFAKFR 606

Query: 129  DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
             M     + +      +I  L ++G+   A  V   +  +GL P + +Y S++  LCK G
Sbjct: 607  CMLDQGVLPDVQTHSVLIHGLSKNGKLQEAMGVFSELLDKGLVPDVFTYTSLISNLCKEG 666

Query: 189  GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
                A++L ++  + G  P+  TY  L+ GLC   ++ KAR++   +  K     +   +
Sbjct: 667  DLKAAFELHDDMCKKGINPNIVTYNALINGLCKLGEIAKARELFDGIPEKGLARNSVTYS 726

Query: 249  IYLRALCLIKNPTELLNVLVFMLQTQCQPDVI---------------------------- 280
              +   C   N TE   +   M      PD                              
Sbjct: 727  TIIAGYCKSANLTEAFQLFHGMKLVGVPPDSFVYCALIDGCCKAGNTEKALSLFLGMVEE 786

Query: 281  ------TLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEA 334
                    N +I+GF K+G++ EA +++ DMV      P+ VT+T +I     VG I+EA
Sbjct: 787  GIASTPAFNALIDGFFKLGKLIEAYQLVEDMVDNHI-TPNHVTYTILIEYHCTVGNIKEA 845

Query: 335  LNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVID 394
              L  + M +R   P ++TY ++L G  R+ R  E   +F+ M+  G+  D   +++++D
Sbjct: 846  EQLFME-MQKRNVMPNVLTYTSLLHGYNRIGRRSEMFSLFDEMVARGIKPDDLAWSVMVD 904

Query: 395  GLCESNQLDEAKRFWDDIVWPS-NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVT 453
               +     +A +  DD++    N+  N +Y  +I  LC+   + E +  L E+   G  
Sbjct: 905  AHLKEGNWIKALKLVDDMLSEGVNVCKN-LYTILIDALCKHNNLSEVLKVLDEVEKQGSK 963

Query: 454  PNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGNDFG 509
             ++     ++    +     EA ++L  M ++ LN    + R     +GNRG   G
Sbjct: 964  LSLATCGTLVCCFHRAGRTDEALRVLESMVRSFLNLLEFSVR-----NGNRGKSNG 1014



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 89/161 (55%), Gaps = 5/161 (3%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C +  + EA +LF +M+ R  +PNV++YT+L+HGY R G     + +FDEM   G+ P+ 
Sbjct: 837 CTVGNIKEAEQLFMEMQKRNVMPNVLTYTSLLHGYNRIGRRSEMFSLFDEMVARGIKPDD 896

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           L +SV+V   L+  +  +A     KL + M   E ++V    +  L+D+LC+   ++EV 
Sbjct: 897 LAWSVMVDAHLKEGNWIKA----LKLVDDML-SEGVNVCKNLYTILIDALCKHNNLSEVL 951

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVM 165
           ++ +++ +  S      CG ++    R+GR   A RV+  M
Sbjct: 952 KVLDEVEKQGSKLSLATCGTLVCCFHRAGRTDEALRVLESM 992



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 104/204 (50%), Gaps = 9/204 (4%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D    L ++ EA++L  DM      PN V+YT LI  +C  G +  A ++F EM+   V
Sbjct: 798 IDGFFKLGKLIEAYQLVEDMVDNHITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNV 857

Query: 61  LPNSLTYSVLVRGVLRT-RDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGY 119
           +PN LTY+ L+ G  R  R  E     MF L++ M     +  ++ A++ +VD+  +EG 
Sbjct: 858 MPNVLTYTSLLHGYNRIGRRSE-----MFSLFDEMV-ARGIKPDDLAWSVMVDAHLKEGN 911

Query: 120 VNEVFRIAEDM-PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
             +  ++ +DM  +G +V +      +ID+LC+        +V+  + K+G   SL +  
Sbjct: 912 WIKALKLVDDMLSEGVNVCKNLYT-ILIDALCKHNNLSEVLKVLDEVEKQGSKLSLATCG 970

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQ 202
           ++V    + G    A ++LE  ++
Sbjct: 971 TLVCCFHRAGRTDEALRVLESMVR 994


>gi|449451896|ref|XP_004143696.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 1032

 Score =  221 bits (564), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 145/535 (27%), Positives = 251/535 (46%), Gaps = 41/535 (7%)

Query: 10  VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSV 69
           + EA ++  +M +RG   NVV+Y  +I G  + GEM  A  +F+EM   G+ P++ TY++
Sbjct: 362 IEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGLEPDTWTYNL 421

Query: 70  LVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAED 129
           L+ G L++ D+ +A  L+ ++  R      L+ +   ++ L+  LC    + +   + + 
Sbjct: 422 LIDGYLKSHDMAKACELLAEMKAR-----KLTPSPFTYSVLISGLCHSSDLQKANEVLDQ 476

Query: 130 MPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG 189
           M +       F  G +I +  +  R   A  ++ +M   G+ P L  YN ++ GLC+   
Sbjct: 477 MIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKK 536

Query: 190 CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNI 249
              A  LL +  + G  P+ HTY   +       +++ A +  + MLS   V    I  I
Sbjct: 537 VEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTI 596

Query: 250 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK 309
            ++  C + N  E L+    ML+    PD+   + +I+   K G+ +EA+ V    +   
Sbjct: 597 LIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTG 656

Query: 310 FCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEE 369
              PD   + ++I G    G I++A + LY  M   G +P IV YN ++ GL +L  V +
Sbjct: 657 -VVPDVFLYNSLISGFCKEGDIEKA-SQLYDEMLHNGINPNIVVYNTLINGLCKLGEVTK 714

Query: 370 AKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIK 429
           A+E+F+ +    +V D  TY+ +IDG C+S  L EA + +D+++      D Y+Y  +I 
Sbjct: 715 ARELFDEIEEKDLVPDVVTYSTIIDGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILID 774

Query: 430 G----------------------------------LCRSGKIHEAVHFLYELVDSGVTPN 455
           G                                   C+ GK+ EA     ++VD  +TPN
Sbjct: 775 GCGKEGNLEKALSLFHEAQQKSVGSLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPN 834

Query: 456 IVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGNDFGL 510
           IV Y ++ID   K  M  EA Q+  +M    + P+ +T+  L   +   GN F +
Sbjct: 835 IVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKM 889



 Score =  209 bits (532), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 138/506 (27%), Positives = 247/506 (48%), Gaps = 13/506 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC    V EA ++   M  +G  P+  +YT L+ G+C+      A  +F+ M   G+ PN
Sbjct: 286 LCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPN 345

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEE---EDLSVNNAAFANLVDSLCREGYV 120
             TY+ L+ G ++  ++E A         R+K+E     L +N   +  ++  + + G +
Sbjct: 346 RFTYTALIDGFIKEGNIEEA--------LRIKDEMITRGLKLNVVTYNAMIGGIAKAGEM 397

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +   +  +M       + +    +ID   +S     A  ++  M+ R LTPS  +Y+ +
Sbjct: 398 AKAMSLFNEMLMAGLEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVL 457

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GLC      +A ++L++ I+ G  P+   Y  L++    ES  E A ++L+ M++   
Sbjct: 458 ISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGV 517

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           +      N  +  LC  K   E   +LV M +   +P+  T    IN + K G I+ A +
Sbjct: 518 LPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAER 577

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
              DM++     P+ V +T +I G  +VG   EAL+  ++ M ++G  P I  Y+A++  
Sbjct: 578 YFKDMLSSGI-VPNNVIYTILIKGHCDVGNTVEALST-FKCMLEKGLIPDIRAYSAIIHS 635

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L +  + +EA  VF   L  GVV D   Y  +I G C+   +++A + +D+++      +
Sbjct: 636 LSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPN 695

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
             VY  +I GLC+ G++ +A     E+ +  + P++V Y+ +IDG CK     EA+++  
Sbjct: 696 IVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTIIDGYCKSGNLTEAFKLFD 755

Query: 481 EMRKNGLNPDAVTWRILDKLHGNRGN 506
           EM   G++PD   + IL    G  GN
Sbjct: 756 EMISKGISPDGYIYCILIDGCGKEGN 781



 Score =  204 bits (519), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 140/481 (29%), Positives = 227/481 (47%), Gaps = 9/481 (1%)

Query: 27  PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVL 86
           PN+ +Y   I G C+TG +D A +V   M   G+ P+  TY++LV G  + +  + A ++
Sbjct: 274 PNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLI 333

Query: 87  MFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDM-PQGKSVNEEFACGHM 145
               +E M     L+ N   +  L+D   +EG + E  RI ++M  +G  +N       M
Sbjct: 334 ----FESMPSS-GLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNV-VTYNAM 387

Query: 146 IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY 205
           I  + ++G    A  +   M   GL P   +YN ++ G  K     +A +LL E      
Sbjct: 388 IGGIAKAGEMAKAMSLFNEMLMAGLEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKL 447

Query: 206 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 265
            PS  TY VL+ GLC  SDL+KA +VL  M+         +    ++A          + 
Sbjct: 448 TPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIE 507

Query: 266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 325
           +L  M+     PD+   N +I G C+  ++EEA  +L DM   K   P+A T+   I   
Sbjct: 508 LLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDM-GEKGIKPNAHTYGAFINLY 566

Query: 326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 385
              G IQ A    ++ M   G  P  V Y  +++G   +    EA   F CML  G++ D
Sbjct: 567 SKSGEIQVA-ERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPD 625

Query: 386 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY 445
              Y+ +I  L ++ +  EA   +   +    + D ++Y ++I G C+ G I +A     
Sbjct: 626 IRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYD 685

Query: 446 ELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
           E++ +G+ PNIV YN +I+G CKL    +A ++  E+ +  L PD VT+  +   +   G
Sbjct: 686 EMLHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTIIDGYCKSG 745

Query: 506 N 506
           N
Sbjct: 746 N 746



 Score =  191 bits (485), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 133/526 (25%), Positives = 236/526 (44%), Gaps = 31/526 (5%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D+   L  + EA  +F    S G  P ++    L+    +   M + +KV+  M    +
Sbjct: 179 IDKFRVLGFLNEASSVFIASISEGFFPTLICCNNLMRDLLKANMMGLFWKVYGSMVEAKI 238

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKE------------------------ 96
           +P+  TY+ +++   +  DV +  +++ ++ +  K                         
Sbjct: 239 VPDVYTYTNVIKAHCKVGDVIKGKMVLSEMEKECKPNLFTYNAFIGGLCQTGAVDEALEV 298

Query: 97  -----EEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCR 151
                E+ L  +   +  LVD  C++    E   I E MP        F    +ID   +
Sbjct: 299 KKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIK 358

Query: 152 SGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHT 211
            G    A R+   M  RGL  ++V+YN+++ G+ K G   +A  L  E +  G  P   T
Sbjct: 359 EGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGLEPDTWT 418

Query: 212 YKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFML 271
           Y +L++G     D+ KA ++L  M ++K        ++ +  LC   +  +   VL  M+
Sbjct: 419 YNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMI 478

Query: 272 QTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRI 331
           +   +P+V    T+I  + +  R E A+++L  M+A     PD   +  +I GL    ++
Sbjct: 479 RNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANG-VLPDLFCYNCLIIGLCRAKKV 537

Query: 332 QEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAI 391
           +EA  LL   M ++G  P   TY A +    +   ++ A+  F  ML  G+V ++  Y I
Sbjct: 538 EEAKMLLVD-MGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTI 596

Query: 392 VIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 451
           +I G C+     EA   +  ++    I D   Y+A+I  L ++GK  EA+    + + +G
Sbjct: 597 LIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTG 656

Query: 452 VTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           V P++  YN +I G CK     +A Q+  EM  NG+NP+ V +  L
Sbjct: 657 VVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTL 702



 Score =  181 bits (459), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 118/484 (24%), Positives = 230/484 (47%), Gaps = 8/484 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC  S + +A+++   M   G  PNV  Y TLI  Y +    ++A ++   M   GVLP+
Sbjct: 461 LCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPD 520

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
              Y+ L+ G+ R + VE A +L+  + E+      +  N   +   ++   + G +   
Sbjct: 521 LFCYNCLIIGLCRAKKVEEAKMLLVDMGEK-----GIKPNAHTYGAFINLYSKSGEIQVA 575

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            R  +DM     V        +I   C  G    A      M ++GL P + +Y++I+H 
Sbjct: 576 ERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHS 635

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           L K+G    A  +  + ++ G +P    Y  L+ G C E D+EKA ++   ML       
Sbjct: 636 LSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPN 695

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
             + N  +  LC +   T+   +   + +    PDV+T +T+I+G+CK G + EA K+ +
Sbjct: 696 IVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTIIDGYCKSGNLTEAFKLFD 755

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           +M++ K  +PD   +  +I G    G +++AL+L ++   Q+     +  +N+++    +
Sbjct: 756 EMIS-KGISPDGYIYCILIDGCGKEGNLEKALSLFHEA--QQKSVGSLSAFNSLIDSFCK 812

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
             +V EA+E+F+ M+   +  +  TY I+ID   ++  ++EA++ + D+   + I +   
Sbjct: 813 HGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLT 872

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y +++    + G   + +    ++   G+  + + Y V+    CK     EA ++L +  
Sbjct: 873 YTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEGKSLEALKLLNKSL 932

Query: 484 KNGL 487
             G+
Sbjct: 933 VEGI 936



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 85/306 (27%), Positives = 149/306 (48%), Gaps = 8/306 (2%)

Query: 1    MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
            ++ LC L  V +A +LF +++ +  VP+VV+Y+T+I GYC++G +  A+K+FDEM   G+
Sbjct: 703  INGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTIIDGYCKSGNLTEAFKLFDEMISKGI 762

Query: 61   LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNN-AAFANLVDSLCREGY 119
             P+   Y +L+ G  +  ++E+A  L         E +  SV + +AF +L+DS C+ G 
Sbjct: 763  SPDGYIYCILIDGCGKEGNLEKALSLF-------HEAQQKSVGSLSAFNSLIDSFCKHGK 815

Query: 120  VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
            V E   + +DM   K          +ID+  ++     A ++   M  R + P+ ++Y S
Sbjct: 816  VIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTS 875

Query: 180  IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
            ++    + G   +   L ++    G       Y V+    C E    +A K+L   L + 
Sbjct: 876  LLLSYNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEGKSLEALKLLNKSLVEG 935

Query: 240  DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                  + +  +  LC  K  + +L +L  M + +      T NT++ GF K G  +EA 
Sbjct: 936  IKLEDDVFDALIFHLCKEKQISTVLELLSEMGKEELSLSSKTCNTLLLGFYKSGNEDEAS 995

Query: 300  KVLNDM 305
            KVL  M
Sbjct: 996  KVLGVM 1001



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 79/305 (25%), Positives = 137/305 (44%), Gaps = 20/305 (6%)

Query: 210 HTYKVLVEGLCGESDLEKARKVLQFMLSKKD-----VDRTRIC------------NIYLR 252
           H+Y +L   LC    + +A  +L+ +L  +      +D    C            +I++ 
Sbjct: 121 HSYSILAIRLCNSGLIHQADNMLEKLLQTRKPPLEILDSLVRCYREFGGSNLTVFDIFID 180

Query: 253 ALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCA 312
              ++    E  +V +  +     P +I  N ++    K   +    KV   MV  K   
Sbjct: 181 KFRVLGFLNEASSVFIASISEGFFPTLICCNNLMRDLLKANMMGLFWKVYGSMVEAKI-V 239

Query: 313 PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKE 372
           PD  T+T +I     VG + +   +L ++  ++   P + TYNA + GL +   V+EA E
Sbjct: 240 PDVYTYTNVIKAHCKVGDVIKGKMVLSEM--EKECKPNLFTYNAFIGGLCQTGAVDEALE 297

Query: 373 VFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLC 432
           V   M+  G+  D  TY +++DG C+  +  EAK  ++ +       + + Y A+I G  
Sbjct: 298 VKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFI 357

Query: 433 RSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAV 492
           + G I EA+    E++  G+  N+V YN +I G  K     +A  +  EM   GL PD  
Sbjct: 358 KEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGLEPDTW 417

Query: 493 TWRIL 497
           T+ +L
Sbjct: 418 TYNLL 422



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 98/220 (44%), Gaps = 43/220 (19%)

Query: 1    MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
            +D  C   +V EA +LF DM  +   PN+V+YT LI  Y +   M+ A ++F +M    +
Sbjct: 807  IDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNI 866

Query: 61   LPNSLTYSVLV---------------------RGVL---------------RTRDVERAN 84
            +PN+LTY+ L+                     RG+                  + +E   
Sbjct: 867  IPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEGKSLEALK 926

Query: 85   VLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGH 144
            +L   L E +K E+D+      F  L+  LC+E  ++ V  +  +M + +       C  
Sbjct: 927  LLNKSLVEGIKLEDDV------FDALIFHLCKEKQISTVLELLSEMGKEELSLSSKTCNT 980

Query: 145  MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY-NSIVHG 183
            ++    +SG    AS+V+ VM++ G  P+ +S  +SI  G
Sbjct: 981  LLLGFYKSGNEDEASKVLGVMQRLGWVPTSLSLTDSISTG 1020


>gi|238908350|emb|CAZ40335.1| non restoring pentatricopeptide repeat [Raphanus sativus]
          Length = 683

 Score =  221 bits (564), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 140/503 (27%), Positives = 253/503 (50%), Gaps = 21/503 (4%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   RV EA  LF  +      P+V+++TTL++G CR G +  A  + D M   G+ P+
Sbjct: 161 LCLDHRVSEALDLFHQICR----PDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPD 216

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY   V G+ +  D   A      L  +M+E   +  N   ++ ++D LC++G  ++ 
Sbjct: 217 QITYGTFVDGMCKMGDTVSA----LNLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDS 272

Query: 124 FRIAEDMPQGKSVNEEFACGH-MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
             +  +M Q K +       + MI   C SGR   A R++  M +R ++P++V+YN++++
Sbjct: 273 HNLFIEM-QDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALIN 331

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
              K G    A +L +E +  G +P+  TY  +++G C +  L+ A  +   M +K    
Sbjct: 332 AFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSP 391

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
                   +   C  K   + + +L  M +     + +T NT+I+GFC +G +  AL + 
Sbjct: 392 DVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLS 451

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVM----------PQRGYSPGIV 352
             M++   C PD VT  T++ GL + G++++AL +   +           P  G  P ++
Sbjct: 452 QQMISSGVC-PDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVL 510

Query: 353 TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI 412
           TYN ++ GL    +  EA+E++  M   G+V D+ TY+ +IDGLC+ ++LDEA + +  +
Sbjct: 511 TYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSM 570

Query: 413 VWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMK 472
              S   +   +  +I G C++G++ + +    E+   G+  + + Y  +I G  K+   
Sbjct: 571 GSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNI 630

Query: 473 REAYQILREMRKNGLNPDAVTWR 495
             A  I +EM  +G+ PD +T R
Sbjct: 631 NGALDIFQEMISSGVYPDTITIR 653



 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 137/482 (28%), Positives = 228/482 (47%), Gaps = 23/482 (4%)

Query: 28  NVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLM 87
           ++ S+T LI  +C   ++  A   F ++   G+ P+ +T++ L+ G+     V  A    
Sbjct: 115 DIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEA---- 170

Query: 88  FKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMID 147
             L+ ++   + L+     F  L++ LCREG V E   + + M +     ++   G  +D
Sbjct: 171 LDLFHQICRPDVLT-----FTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVD 225

Query: 148 SLCRSGRNHGASRVVYVMRK-RGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL 206
            +C+ G    A  ++  M +   + P++V Y++I+ GLCK G    ++ L  E    G  
Sbjct: 226 GMCKMGDTVSALNLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIF 285

Query: 207 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 266
           P+  TY  ++ G C       A+++LQ ML +K        N  + A        E   +
Sbjct: 286 PNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAEL 345

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
              ML     P+ IT N++I+GFCK  R++ A  +   ++A K C+PD  TFTT+I G  
Sbjct: 346 YDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFY-LMATKGCSPDVFTFTTLIDGYC 404

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
              RI + + LL++ MP+RG     VTYN ++ G   +  +  A ++   M+  GV  D 
Sbjct: 405 GAKRIDDGMELLHE-MPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDI 463

Query: 387 TTYAIVIDGLCESNQLDEAKRFWD---------DIVWPSN--IHDNYVYAAMIKGLCRSG 435
            T   ++DGLC++ +L +A   +          D   P N    D   Y  +I GL   G
Sbjct: 464 VTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEG 523

Query: 436 KIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWR 495
           K  EA     E+   G+ P+ + Y+ +IDG CK S   EA Q+   M     +P+ VT+ 
Sbjct: 524 KFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFN 583

Query: 496 IL 497
            L
Sbjct: 584 TL 585



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/274 (29%), Positives = 137/274 (50%), Gaps = 7/274 (2%)

Query: 225 LEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNT 284
           LE A  +   ML  + +      N  + A+  ++ P  ++++   M + Q + D+ +   
Sbjct: 62  LEDAIDLFSDMLRSRPLPSVIDFNKLMGAVVRMERPDLVISLYQKMERKQIRCDIYSFTI 121

Query: 285 VINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ 344
           +I  FC   ++  AL     +       PD VTFTT++ GL    R+ EAL+L +Q+   
Sbjct: 122 LIKCFCSCSKLPFALSTFGKLTKLGL-HPDVVTFTTLLHGLCLDHRVSEALDLFHQIC-- 178

Query: 345 RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 404
               P ++T+  ++ GL R  RV EA  + + M+  G+  D  TY   +DG+C+      
Sbjct: 179 ---RPDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVS 235

Query: 405 AKRFWDDIVWPSNIHDNYV-YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463
           A      +   S+I  N V Y+A+I GLC+ G+  ++ +   E+ D G+ PNIV YN +I
Sbjct: 236 ALNLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMI 295

Query: 464 DGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            G C       A ++L+EM +  ++P+ VT+  L
Sbjct: 296 GGFCISGRWSAAQRLLQEMLERKISPNVVTYNAL 329


>gi|356561387|ref|XP_003548963.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 520

 Score =  221 bits (564), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 130/470 (27%), Positives = 243/470 (51%), Gaps = 7/470 (1%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M+++G VP++V+ + LI+ +C  G+M  ++ V  ++   G  PN++  + L++G+    +
Sbjct: 36  MEAKGIVPDLVTLSILINCFCHLGQMAFSFSVLGKILKLGYQPNTIILNTLMKGLCLKGE 95

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
           V+++     K+       +   ++  ++  L++ LC+ G      ++   +    +  + 
Sbjct: 96  VKKSLHFHDKVVA-----QGFQMDQVSYGILLNGLCKIGETRCAIKLLRTIEDRSTRPDV 150

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
                +ID LC+      A  +   M  RG+ P +++Y +++ G C  G  M A+ LL E
Sbjct: 151 VMYSTIIDGLCKDKLVDEAYDLYSEMNARGIFPDVITYTTLICGFCLAGQLMEAFGLLNE 210

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
            I     P+ +TY  L++ LC E  +++++ +L  M  K       I +I +   CL+  
Sbjct: 211 MILKNINPNIYTYNTLIDTLCKEGKVKESKNLLAVMTKKGVKPDVVIYSILMDGYCLVGE 270

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
             +   + + M+QT   PDV + N +ING CK  R++EA+ +L +M+  K   PD VT++
Sbjct: 271 VQKAKQIFLVMVQTGVNPDVYSYNIIINGLCKGKRVDEAMNLLREMLH-KNMIPDTVTYS 329

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
           ++I GL  +GRI   L+L  + M  RG    +VTYN++L GL + + +++A  +F  M  
Sbjct: 330 SLIDGLCKLGRITTILDLTKE-MHHRGQPANLVTYNSLLDGLCKNQNLDKAIALFMKMKE 388

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
            G+  +  TY  +IDGLC+  +L + +  +  ++      D + Y  MI GLC+ G   E
Sbjct: 389 RGIQPNKYTYTALIDGLCKGGRLKKGQALFQHLLVKGYCIDVWTYTVMISGLCKEGMFDE 448

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNP 489
           A+    ++ D+G  PN V + ++I    +     +A ++L EM   GL P
Sbjct: 449 ALAMKSKMEDNGCIPNAVTFEIIIRSLLEKDENDKAEKLLHEMIAKGLLP 498



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 108/391 (27%), Positives = 200/391 (51%), Gaps = 2/391 (0%)

Query: 107 FANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMR 166
           F  ++ SL +  +   V  +++ M     V +      +I+  C  G+   +  V+  + 
Sbjct: 13  FGKILGSLVKMKHYPTVISLSKQMEAKGIVPDLVTLSILINCFCHLGQMAFSFSVLGKIL 72

Query: 167 KRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLE 226
           K G  P+ +  N+++ GLC  G   ++    ++ +  G+   + +Y +L+ GLC   +  
Sbjct: 73  KLGYQPNTIILNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYGILLNGLCKIGETR 132

Query: 227 KARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVI 286
            A K+L+ +  +       + +  +  LC  K   E  ++   M      PDVIT  T+I
Sbjct: 133 CAIKLLRTIEDRSTRPDVVMYSTIIDGLCKDKLVDEAYDLYSEMNARGIFPDVITYTTLI 192

Query: 287 NGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
            GFC  G++ EA  +LN+M+  K   P+  T+ T+I  L   G+++E+ NLL  VM ++G
Sbjct: 193 CGFCLAGQLMEAFGLLNEMIL-KNINPNIYTYNTLIDTLCKEGKVKESKNLL-AVMTKKG 250

Query: 347 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
             P +V Y+ ++ G   +  V++AK++F  M+  GV  D  +Y I+I+GLC+  ++DEA 
Sbjct: 251 VKPDVVIYSILMDGYCLVGEVQKAKQIFLVMVQTGVNPDVYSYNIIINGLCKGKRVDEAM 310

Query: 407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466
               +++  + I D   Y+++I GLC+ G+I   +    E+   G   N+V YN ++DG 
Sbjct: 311 NLLREMLHKNMIPDTVTYSSLIDGLCKLGRITTILDLTKEMHHRGQPANLVTYNSLLDGL 370

Query: 467 CKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           CK     +A  +  +M++ G+ P+  T+  L
Sbjct: 371 CKNQNLDKAIALFMKMKERGIQPNKYTYTAL 401



 Score =  151 bits (381), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 113/453 (24%), Positives = 210/453 (46%), Gaps = 47/453 (10%)

Query: 6   GLSRVGEAHK-LFFDMK--SRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           GL   GE  K L F  K  ++G   + VSY  L++G C+ GE   A K+   +      P
Sbjct: 89  GLCLKGEVKKSLHFHDKVVAQGFQMDQVSYGILLNGLCKIGETRCAIKLLRTIEDRSTRP 148

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           + + YS ++ G+ + + V+ A    + L+  M     +  +   +  L+   C  G + E
Sbjct: 149 DVVMYSTIIDGLCKDKLVDEA----YDLYSEM-NARGIFPDVITYTTLICGFCLAGQLME 203

Query: 123 VFRIAEDMPQGKSVNEE-FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
            F +  +M   K++N   +    +ID+LC+ G+   +  ++ VM K+G+ P +V Y+ ++
Sbjct: 204 AFGLLNEMIL-KNINPNIYTYNTLIDTLCKEGKVKESKNLLAVMTKKGVKPDVVIYSILM 262

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
            G C  G   +A Q+    +Q G  P  ++Y +++ GLC    +++A  +L+ ML K  +
Sbjct: 263 DGYCLVGEVQKAKQIFLVMVQTGVNPDVYSYNIIINGLCKGKRVDEAMNLLREMLHKNMI 322

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
                                              PD +T +++I+G CK+GRI   L +
Sbjct: 323 -----------------------------------PDTVTYSSLIDGLCKLGRITTILDL 347

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
             +M   +    + VT+ +++ GL     + +A+ L  + M +RG  P   TY A++ GL
Sbjct: 348 TKEM-HHRGQPANLVTYNSLLDGLCKNQNLDKAIALFMK-MKERGIQPNKYTYTALIDGL 405

Query: 362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
            +  R+++ + +F  +L  G   D  TY ++I GLC+    DEA      +     I + 
Sbjct: 406 CKGGRLKKGQALFQHLLVKGYCIDVWTYTVMISGLCKEGMFDEALAMKSKMEDNGCIPNA 465

Query: 422 YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTP 454
             +  +I+ L    +  +A   L+E++  G+ P
Sbjct: 466 VTFEIIIRSLLEKDENDKAEKLLHEMIAKGLLP 498



 Score =  151 bits (381), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 109/392 (27%), Positives = 186/392 (47%), Gaps = 16/392 (4%)

Query: 1   MDQ------LCGLSRVGE---AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKV 51
           MDQ      L GL ++GE   A KL   ++ R   P+VV Y+T+I G C+   +D AY +
Sbjct: 113 MDQVSYGILLNGLCKIGETRCAIKLLRTIEDRSTRPDVVMYSTIIDGLCKDKLVDEAYDL 172

Query: 52  FDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLV 111
           + EM   G+ P+ +TY+ L+ G      +  A    F L   M   ++++ N   +  L+
Sbjct: 173 YSEMNARGIFPDVITYTTLICGFCLAGQLMEA----FGLLNEMI-LKNINPNIYTYNTLI 227

Query: 112 DSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLT 171
           D+LC+EG V E   +   M +     +      ++D  C  G    A ++  VM + G+ 
Sbjct: 228 DTLCKEGKVKESKNLLAVMTKKGVKPDVVIYSILMDGYCLVGEVQKAKQIFLVMVQTGVN 287

Query: 172 PSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKV 231
           P + SYN I++GLCK      A  LL E +    +P   TY  L++GLC    +     +
Sbjct: 288 PDVYSYNIIINGLCKGKRVDEAMNLLREMLHKNMIPDTVTYSSLIDGLCKLGRITTILDL 347

Query: 232 LQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK 291
            + M  +         N  L  LC  +N  + + + + M +   QP+  T   +I+G CK
Sbjct: 348 TKEMHHRGQPANLVTYNSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYTYTALIDGLCK 407

Query: 292 MGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGI 351
            GR+++   +   ++   +C  D  T+T +I GL   G   EAL +  + M   G  P  
Sbjct: 408 GGRLKKGQALFQHLLVKGYCI-DVWTYTVMISGLCKEGMFDEALAMKSK-MEDNGCIPNA 465

Query: 352 VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 383
           VT+  ++R L      ++A+++ + M+  G++
Sbjct: 466 VTFEIIIRSLLEKDENDKAEKLLHEMIAKGLL 497


>gi|15237662|ref|NP_201237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171655|sp|Q9FMF6.1|PP444_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g64320, mitochondrial; Flags: Precursor
 gi|9759408|dbj|BAB09863.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010486|gb|AED97869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 730

 Score =  221 bits (564), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 141/486 (29%), Positives = 241/486 (49%), Gaps = 12/486 (2%)

Query: 13  AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVR 72
           A  +F+DM SR   P + ++  ++  +C   E+D A  +  +M   G +PNS+ Y  L+ 
Sbjct: 201 AANVFYDMLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIH 260

Query: 73  GVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQ 132
            + +   V  A     +L E M     +  +   F +++  LC+   +NE  ++   M  
Sbjct: 261 SLSKCNRVNEA----LQLLEEMFLMGCVP-DAETFNDVILGLCKFDRINEAAKMVNRMLI 315

Query: 133 GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMR 192
                ++   G++++ LC+ GR   A  + Y + K    P +V +N+++HG   HG    
Sbjct: 316 RGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPK----PEIVIFNTLIHGFVTHGRLDD 371

Query: 193 AYQLLEEGI-QFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYL 251
           A  +L + +  +G +P   TY  L+ G   E  +  A +VL  M +K          I +
Sbjct: 372 AKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILV 431

Query: 252 RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC 311
              C +    E  NVL  M     +P+ +  N +I+ FCK  RI EA+++  +M   K C
Sbjct: 432 DGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREM-PRKGC 490

Query: 312 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK 371
            PD  TF ++I GL  V  I+ AL LL  ++ + G     VTYN ++    R   ++EA+
Sbjct: 491 KPDVYTFNSLISGLCEVDEIKHALWLLRDMISE-GVVANTVTYNTLINAFLRRGEIKEAR 549

Query: 372 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 431
           ++ N M+  G   D  TY  +I GLC + ++D+A+  ++ ++   +   N     +I GL
Sbjct: 550 KLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGL 609

Query: 432 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 491
           CRSG + EAV F  E+V  G TP+IV +N +I+G C+     +   + R+++  G+ PD 
Sbjct: 610 CRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDT 669

Query: 492 VTWRIL 497
           VT+  L
Sbjct: 670 VTFNTL 675



 Score =  213 bits (541), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 140/498 (28%), Positives = 253/498 (50%), Gaps = 12/498 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M   C ++ +  A  L  DM   G VPN V Y TLIH   +   ++ A ++ +EM   G 
Sbjct: 224 MKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGC 283

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P++ T++ ++ G+ +   +  A  ++ ++  R    +D++     +  L++ LC+ G V
Sbjct: 284 VPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDIT-----YGYLMNGLCKIGRV 338

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVM-RKRGLTPSLVSYNS 179
           +    +   +P+ + V        +I      GR   A  V+  M    G+ P + +YNS
Sbjct: 339 DAAKDLFYRIPKPEIV----IFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNS 394

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           +++G  K G    A ++L +    G  P+ ++Y +LV+G C    +++A  VL  M +  
Sbjct: 395 LIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADG 454

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
               T   N  + A C      E + +   M +  C+PDV T N++I+G C++  I+ AL
Sbjct: 455 LKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHAL 514

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
            +L DM++    A + VT+ T+I   L  G I+EA  L+ +++ Q G     +TYN++++
Sbjct: 515 WLLRDMISEGVVA-NTVTYNTLINAFLRRGEIKEARKLVNEMVFQ-GSPLDEITYNSLIK 572

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
           GL R   V++A+ +F  ML  G    + +  I+I+GLC S  ++EA  F  ++V   +  
Sbjct: 573 GLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTP 632

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           D   + ++I GLCR+G+I + +    +L   G+ P+ V +N ++   CK     +A  +L
Sbjct: 633 DIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLL 692

Query: 480 REMRKNGLNPDAVTWRIL 497
            E  ++G  P+  TW IL
Sbjct: 693 DEGIEDGFVPNHRTWSIL 710



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 116/468 (24%), Positives = 208/468 (44%), Gaps = 9/468 (1%)

Query: 32  YTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLW 91
           Y  LI      GE     ++  +M+  G++     +  ++R   +     +   LM ++ 
Sbjct: 114 YQVLIGKLGANGEFKTIDRLLIQMKDEGIVFKESLFISIMRDYDKAGFPGQTTRLMLEMR 173

Query: 92  ERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCR 151
                E      N     LV   C +   N  +    DM   K     F  G ++ + C 
Sbjct: 174 NVYSCEPTFKSYNVVLEILVSGNCHKVAANVFY----DMLSRKIPPTLFTFGVVMKAFCA 229

Query: 152 SGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHT 211
                 A  ++  M K G  P+ V Y +++H L K      A QLLEE    G +P   T
Sbjct: 230 VNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAET 289

Query: 212 YKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFML 271
           +  ++ GLC    + +A K++  ML +            +  LC I    +    L + +
Sbjct: 290 FNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGR-VDAAKDLFYRI 348

Query: 272 QTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRI 331
               +P+++  NT+I+GF   GR+++A  VL+DMV      PD  T+ ++I+G    G +
Sbjct: 349 P---KPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLV 405

Query: 332 QEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAI 391
             AL +L+  M  +G  P + +Y  ++ G  +L +++EA  V N M   G+  ++  +  
Sbjct: 406 GLALEVLHD-MRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNC 464

Query: 392 VIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 451
           +I   C+ +++ EA   + ++       D Y + ++I GLC   +I  A+  L +++  G
Sbjct: 465 LISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEG 524

Query: 452 VTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
           V  N V YN +I+   +    +EA +++ EM   G   D +T+  L K
Sbjct: 525 VVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIK 572



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 107/432 (24%), Positives = 204/432 (47%), Gaps = 18/432 (4%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R+ EA K+   M  RG  P+ ++Y  L++G C+ G +D A  +F  +      P 
Sbjct: 297 LCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPK----PE 352

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            + ++ L+ G +    ++ A  ++  +        D+   N+    L+    +EG V   
Sbjct: 353 IVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNS----LIYGYWKEGLVGLA 408

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             +  DM         ++   ++D  C+ G+   A  V+  M   GL P+ V +N ++  
Sbjct: 409 LEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISA 468

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK      A ++  E  + G  P  +T+  L+ GLC   +++ A  +L+ M+S+  V  
Sbjct: 469 FCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVAN 528

Query: 244 TRICNIYLRALCL---IKNPTELLNVLVFMLQTQCQP-DVITLNTVINGFCKMGRIEEAL 299
           T   N  + A      IK   +L+N +VF    Q  P D IT N++I G C+ G +++A 
Sbjct: 529 TVTYNTLINAFLRRGEIKEARKLVNEMVF----QGSPLDEITYNSLIKGLCRAGEVDKAR 584

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
            +   M+     AP  ++   +I GL   G ++EA+    + M  RG +P IVT+N+++ 
Sbjct: 585 SLFEKMLRDGH-APSNISCNILINGLCRSGMVEEAVEFQKE-MVLRGSTPDIVTFNSLIN 642

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
           GL R  R+E+   +F  +   G+  D+ T+  ++  LC+   + +A    D+ +    + 
Sbjct: 643 GLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFVP 702

Query: 420 DNYVYAAMIKGL 431
           ++  ++ +++ +
Sbjct: 703 NHRTWSILLQSI 714



 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 103/422 (24%), Positives = 193/422 (45%), Gaps = 9/422 (2%)

Query: 88  FKLWERM---KEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGH 144
           FK  +R+    ++E +    + F +++    + G+  +  R+  +M    S    F   +
Sbjct: 127 FKTIDRLLIQMKDEGIVFKESLFISIMRDYDKAGFPGQTTRLMLEMRNVYSCEPTFKSYN 186

Query: 145 MIDSLCRSGRNHG-ASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQF 203
           ++  +  SG  H  A+ V Y M  R + P+L ++  ++   C       A  LL +  + 
Sbjct: 187 VVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKH 246

Query: 204 GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTEL 263
           G +P+   Y+ L+  L   + + +A ++L+ M     V      N  +  LC      E 
Sbjct: 247 GCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEA 306

Query: 264 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF 323
             ++  ML     PD IT   ++NG CK+GR++ A  +       +   P+ V F T+I 
Sbjct: 307 AKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFY-----RIPKPEIVIFNTLIH 361

Query: 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 383
           G +  GR+ +A  +L  ++   G  P + TYN+++ G ++   V  A EV + M   G  
Sbjct: 362 GFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCK 421

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
            +  +Y I++DG C+  ++DEA    +++       +   +  +I   C+  +I EAV  
Sbjct: 422 PNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEI 481

Query: 444 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGN 503
             E+   G  P++  +N +I G C++   + A  +LR+M   G+  + VT+  L      
Sbjct: 482 FREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLR 541

Query: 504 RG 505
           RG
Sbjct: 542 RG 543



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 119/226 (52%), Gaps = 5/226 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC +  +  A  L  DM S G V N V+Y TLI+ + R GE+  A K+ +EM   G   +
Sbjct: 504 LCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLD 563

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY+ L++G+ R  +V++A  L  K+        ++S N      L++ LCR G V E 
Sbjct: 564 EITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNI-----LINGLCRSGMVEEA 618

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
               ++M    S  +      +I+ LCR+GR      +   ++  G+ P  V++N+++  
Sbjct: 619 VEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSW 678

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKAR 229
           LCK G    A  LL+EGI+ G++P+  T+ +L++ +  +  L++ R
Sbjct: 679 LCKGGFVYDACLLLDEGIEDGFVPNHRTWSILLQSIIPQETLDRRR 724


>gi|225439731|ref|XP_002272943.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic [Vitis vinifera]
          Length = 772

 Score =  221 bits (564), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 141/478 (29%), Positives = 238/478 (49%), Gaps = 7/478 (1%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M SRG  P+V ++  LI   CR  ++  A  + +EM   G+ P+  T++ L++G +   +
Sbjct: 202 MVSRGIKPDVTTFNILIKALCRAHQIRPAILMMEEMGSYGLSPDEKTFTTLMQGFIEEGN 261

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
           +  A     ++ E+M      S +N     LV   C+EG + EV    ++M       + 
Sbjct: 262 MNGA----LRIREQMVAAGCPS-SNVTVNVLVHGYCKEGRIEEVLSFIDEMSNEGFRPDR 316

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
           F    +++ LCR G    A  ++ VM + G  P + +YNS++ GLCK G    A ++L +
Sbjct: 317 FTFNSLVNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNSLIFGLCKLGEVEEAVEILNQ 376

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
            I   + P+  TY  L+  LC E+ +E+A ++ + + SK  +      N  ++ LCL  N
Sbjct: 377 MILRDFSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTNN 436

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
               + +   M    C PD  T N +I+  C  GR+EEAL +L +M +   C+ + VT+ 
Sbjct: 437 HRLAMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSG-CSRNVVTYN 495

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
           T+I G     RI+EA   ++  M  +G S  +VTYN ++ GL + RRVEEA ++ + ML 
Sbjct: 496 TLIDGFCKNKRIEEA-EEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLM 554

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
            G+  D  TY  ++   C +  + +A      +       D+  Y  +I GL ++G++  
Sbjct: 555 EGLKPDKFTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEPDSVTYGTLILGLSKAGRVEL 614

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           A   L  +   G+      YN VI    +     EA ++ REM + G  PDAVT++++
Sbjct: 615 ASRLLRTVQLKGMVLAPQTYNPVIKALFREKRTSEAVRLFREMMEKGDPPDAVTYKVV 672



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 131/485 (27%), Positives = 229/485 (47%), Gaps = 42/485 (8%)

Query: 21  KSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDV 80
           K    VP+ V Y  ++    + G      +V  EM+H G      T+ +L+    +    
Sbjct: 97  KQPNFVPSSVIYEEVLRKLGKDGSFGSMRRVLQEMKHTGCEIRRGTFLILIESYAKFELF 156

Query: 81  ERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEF 140
           + A  ++    + M+EE  L ++   +  L++ L     +  V          + VN   
Sbjct: 157 DEAVAVV----DIMEEEFGLKLDAFTYNFLLNVLVDGNKLKLV----------EIVN--- 199

Query: 141 ACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEG 200
                             SR+V     RG+ P + ++N ++  LC+      A  ++EE 
Sbjct: 200 ------------------SRMV----SRGIKPDVTTFNILIKALCRAHQIRPAILMMEEM 237

Query: 201 IQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNP 260
             +G  P E T+  L++G   E ++  A ++ + M++          N+ +   C     
Sbjct: 238 GSYGLSPDEKTFTTLMQGFIEEGNMNGALRIREQMVAAGCPSSNVTVNVLVHGYCKEGRI 297

Query: 261 TELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTT 320
            E+L+ +  M     +PD  T N+++NG C++G ++ AL++L+ M+   F  PD  T+ +
Sbjct: 298 EEVLSFIDEMSNEGFRPDRFTFNSLVNGLCRIGHVKHALEILDVMLQEGF-DPDIFTYNS 356

Query: 321 IIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI 380
           +IFGL  +G ++EA+ +L Q M  R +SP  VTYN ++  L +  +VEEA E+   +   
Sbjct: 357 LIFGLCKLGEVEEAVEILNQ-MILRDFSPNTVTYNTLISTLCKENQVEEATELARVLTSK 415

Query: 381 GVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEA 440
           G++ D  T+  +I GLC +N    A   ++++       D + Y  +I  LC  G++ EA
Sbjct: 416 GILPDVCTFNSLIQGLCLTNNHRLAMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEA 475

Query: 441 VHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL-DK 499
           +  L E+  SG + N+V YN +IDG CK     EA +I  EM   G++ + VT+  L D 
Sbjct: 476 LSLLKEMESSGCSRNVVTYNTLIDGFCKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDG 535

Query: 500 LHGNR 504
           L  NR
Sbjct: 536 LCKNR 540



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/346 (25%), Positives = 153/346 (44%), Gaps = 44/346 (12%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   R+ EA  L  +M+S G   NVV+Y TLI G+C+   ++ A ++FDEM   G+
Sbjct: 463 IDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLIDGFCKNKRIEEAEEIFDEMELQGI 522

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             N +TY+ L+ G+ + R VE A  LM ++       E L  +   + +L+   CR G +
Sbjct: 523 SRNVVTYNTLIDGLCKNRRVEEAAQLMDQML-----MEGLKPDKFTYNSLLTYFCRAGDI 577

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +   I + M       +    G +I  L ++GR   ASR++  ++ +G+  +  +YN +
Sbjct: 578 KKAADIVQTMTSNGCEPDSVTYGTLILGLSKAGRVELASRLLRTVQLKGMVLAPQTYNPV 637

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +  L +      A +L  E ++ G  P   TYKV+  GLC                    
Sbjct: 638 IKALFREKRTSEAVRLFREMMEKGDPPDAVTYKVVFRGLCSGG----------------- 680

Query: 241 VDRTRICNIYLRALCLIKNPT-ELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                              P  E ++ LV M      PD  +   +  G C +   +  +
Sbjct: 681 ------------------GPIGEAVDFLVEMTDKGFLPDFSSFLMLAEGLCALSMEDTLI 722

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQR 345
           K++N ++     +   V   ++I G L + + Q+AL  L +++  R
Sbjct: 723 KLVNRVMKQANFSDSEV---SMIMGFLKIRKFQDALATLGRILSSR 765



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 134/293 (45%), Gaps = 2/293 (0%)

Query: 206 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD-VDRTRICNIYLRALCLIKNPTELL 264
           LP   T K L + L  +SD +    +L +   + + V  + I    LR L    +   + 
Sbjct: 66  LPQNFTPKQLRDALRRQSDEDSILDLLDWASKQPNFVPSSVIYEEVLRKLGKDGSFGSMR 125

Query: 265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 324
            VL  M  T C+    T   +I  + K    +EA+ V++ M        DA T+  ++  
Sbjct: 126 RVLQEMKHTGCEIRRGTFLILIESYAKFELFDEAVAVVDIMEEEFGLKLDAFTYNFLLNV 185

Query: 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 384
           L++  +++  + ++   M  RG  P + T+N +++ L R  ++  A  +   M   G+  
Sbjct: 186 LVDGNKLK-LVEIVNSRMVSRGIKPDVTTFNILIKALCRAHQIRPAILMMEEMGSYGLSP 244

Query: 385 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFL 444
           D  T+  ++ G  E   ++ A R  + +V       N     ++ G C+ G+I E + F+
Sbjct: 245 DEKTFTTLMQGFIEEGNMNGALRIREQMVAAGCPSSNVTVNVLVHGYCKEGRIEEVLSFI 304

Query: 445 YELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            E+ + G  P+   +N +++G C++   + A +IL  M + G +PD  T+  L
Sbjct: 305 DEMSNEGFRPDRFTFNSLVNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNSL 357



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 74/180 (41%), Gaps = 2/180 (1%)

Query: 335 LNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVID 394
           L+LL     Q  + P  V Y  VLR L +       + V   M   G      T+ I+I+
Sbjct: 89  LDLLDWASKQPNFVPSSVIYEEVLRKLGKDGSFGSMRRVLQEMKHTGCEIRRGTFLILIE 148

Query: 395 GLCESNQLDEAKRFWDDIVWPSNIH-DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVT 453
              +    DEA    D +     +  D + Y  ++  L    K+         +V  G+ 
Sbjct: 149 SYAKFELFDEAVAVVDIMEEEFGLKLDAFTYNFLLNVLVDGNKLKLVEIVNSRMVSRGIK 208

Query: 454 PNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGNDFG-LRI 512
           P++  +N++I   C+    R A  ++ EM   GL+PD  T+  L +     GN  G LRI
Sbjct: 209 PDVTTFNILIKALCRAHQIRPAILMMEEMGSYGLSPDEKTFTTLMQGFIEEGNMNGALRI 268


>gi|32527604|gb|AAP86199.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
          Length = 686

 Score =  221 bits (564), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 140/503 (27%), Positives = 253/503 (50%), Gaps = 21/503 (4%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   RV EA  LF  +      P+V+++TTL++G CR G +  A  + D M   G+ P+
Sbjct: 161 LCLDHRVSEALDLFHQICR----PDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPD 216

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY   V G+ +  D   A      L  +M+E   +  N   ++ ++D LC++G  ++ 
Sbjct: 217 QITYGTFVDGMCKMGDTVSA----LNLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDS 272

Query: 124 FRIAEDMPQGKSVNEEFACGH-MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
             +  +M Q K +       + MI   C SGR   A R++  M +R ++P++V+YN++++
Sbjct: 273 HNLFIEM-QDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALIN 331

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
              K G    A +L +E +  G +P+  TY  +++G C +  L+ A  +   M +K    
Sbjct: 332 AFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSP 391

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
                   +   C  K   + + +L  M +     + +T NT+I+GFC +G +  AL + 
Sbjct: 392 DVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLS 451

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVM----------PQRGYSPGIV 352
             M++   C PD VT  T++ GL + G++++AL +   +           P  G  P ++
Sbjct: 452 QQMISSGVC-PDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVL 510

Query: 353 TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI 412
           TYN ++ GL    +  EA+E++  M   G+V D+ TY+ +IDGLC+ ++LDEA + +  +
Sbjct: 511 TYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSM 570

Query: 413 VWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMK 472
              S   +   +  +I G C++G++ + +    E+   G+  + + Y  +I G  K+   
Sbjct: 571 GSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNI 630

Query: 473 REAYQILREMRKNGLNPDAVTWR 495
             A  I +EM  +G+ PD +T R
Sbjct: 631 NGALDIFQEMISSGVYPDTITIR 653



 Score =  199 bits (505), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 137/482 (28%), Positives = 228/482 (47%), Gaps = 23/482 (4%)

Query: 28  NVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLM 87
           ++ S+T LI  +C   ++  A   F ++   G+ P+ +T++ L+ G+     V  A    
Sbjct: 115 DIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEA---- 170

Query: 88  FKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMID 147
             L+ ++   + L+     F  L++ LCREG V E   + + M +     ++   G  +D
Sbjct: 171 LDLFHQICRPDVLT-----FTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVD 225

Query: 148 SLCRSGRNHGASRVVYVMRK-RGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL 206
            +C+ G    A  ++  M +   + P++V Y++I+ GLCK G    ++ L  E    G  
Sbjct: 226 GMCKMGDTVSALNLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIF 285

Query: 207 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 266
           P+  TY  ++ G C       A+++LQ ML +K        N  + A        E   +
Sbjct: 286 PNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAEL 345

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
              ML     P+ IT N++I+GFCK  R++ A  +   ++A K C+PD  TFTT+I G  
Sbjct: 346 YDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFY-LMATKGCSPDVFTFTTLIDGYC 404

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
              RI + + LL++ MP+RG     VTYN ++ G   +  +  A ++   M+  GV  D 
Sbjct: 405 GAKRIDDGMELLHE-MPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDI 463

Query: 387 TTYAIVIDGLCESNQLDEAKRFWD---------DIVWPSN--IHDNYVYAAMIKGLCRSG 435
            T   ++DGLC++ +L +A   +          D   P N    D   Y  +I GL   G
Sbjct: 464 VTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEG 523

Query: 436 KIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWR 495
           K  EA     E+   G+ P+ + Y+ +IDG CK S   EA Q+   M     +P+ VT+ 
Sbjct: 524 KFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFN 583

Query: 496 IL 497
            L
Sbjct: 584 TL 585



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 86/347 (24%), Positives = 157/347 (45%), Gaps = 17/347 (4%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           EA +L+ +M  RG +PN ++Y ++I G+C+   +D A  +F  M   G  P+  T++ L+
Sbjct: 341 EAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLI 400

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP 131
            G    + ++    L+ ++  R      L  N   +  L+   C  G +N    +++ M 
Sbjct: 401 DGYCGAKRIDDGMELLHEMPRR-----GLVANTVTYNTLIHGFCLVGDLNAALDLSQQMI 455

Query: 132 QGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKR-----------GLTPSLVSYNSI 180
                 +   C  ++D LC +G+   A  +   M+K            G+ P +++YN +
Sbjct: 456 SSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNIL 515

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GL   G  + A +L EE    G +P   TY  +++GLC +S L++A ++   M SK  
Sbjct: 516 ICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSF 575

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                  N  +   C      + L +   M +     D I   T+I GF K+G I  AL 
Sbjct: 576 SPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALD 635

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGY 347
           +  +M++     PD +T   ++ G  +   ++ A+ +L  +    GY
Sbjct: 636 IFQEMISSGV-YPDTITIRNMLTGFWSKEELERAVAMLEDLQMSVGY 681



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/274 (29%), Positives = 137/274 (50%), Gaps = 7/274 (2%)

Query: 225 LEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNT 284
           LE A  +   ML  + +      N  + A+  ++ P  ++++   M + Q + D+ +   
Sbjct: 62  LEDAIDLFSDMLRSRPLPSVIDFNKLMGAVVRMERPDLVISLYQKMERKQIRCDIYSFTI 121

Query: 285 VINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ 344
           +I  FC   ++  AL     +       PD VTFTT++ GL    R+ EAL+L +Q+   
Sbjct: 122 LIKCFCSCSKLPFALSTFGKLTKLGL-HPDVVTFTTLLHGLCLDHRVSEALDLFHQIC-- 178

Query: 345 RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 404
               P ++T+  ++ GL R  RV EA  + + M+  G+  D  TY   +DG+C+      
Sbjct: 179 ---RPDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVS 235

Query: 405 AKRFWDDIVWPSNIHDNYV-YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463
           A      +   S+I  N V Y+A+I GLC+ G+  ++ +   E+ D G+ PNIV YN +I
Sbjct: 236 ALNLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMI 295

Query: 464 DGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            G C       A ++L+EM +  ++P+ VT+  L
Sbjct: 296 GGFCISGRWSAAQRLLQEMLERKISPNVVTYNAL 329


>gi|147798083|emb|CAN67256.1| hypothetical protein VITISV_039434 [Vitis vinifera]
          Length = 722

 Score =  221 bits (563), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 150/498 (30%), Positives = 248/498 (49%), Gaps = 12/498 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M  LC ++ V  A  L  DM   G VPN + Y TLIH   + G ++   K+ +EM   G 
Sbjct: 224 MKALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALXKVGRVNEVLKLLEEMLLMGC 283

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P+  T++  + G+ +   +  A  L+ ++  R       + N+  +  L+  LCR G V
Sbjct: 284 IPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLR-----GFTPNSFTYGVLMHGLCRMGKV 338

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVY-VMRKRGLTPSLVSYNS 179
           +E   +   +P    V        +I+     GR   A  V++  M   G  P + +YN+
Sbjct: 339 DEARMLLNKVPNPNVV----LFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNT 394

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++ GLCK G  + A +L+ E    G  P+  TY +L++  C E  LE+AR VL  M  K 
Sbjct: 395 LILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKG 454

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                   N  + ALC  +   + LN+   M    C+PD+ T N++I G CK+ + EEAL
Sbjct: 455 LALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEAL 514

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
            +  DM+     A + +T+ T+I   L  G +QEAL L+  ++  RG     +TYN +++
Sbjct: 515 GLYQDMLLEGVIA-NTITYNTLIHAFLRRGAMQEALKLVNDML-FRGCPLDDITYNGLIK 572

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
            L R   +E+   +F  M+  G+  ++ +  I+I+GLC +  +  A  F  D++      
Sbjct: 573 ALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTP 632

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           D   Y ++I GLC++G+  EA++   +L   G+ P+ + YN +I   CK  M  +A+ +L
Sbjct: 633 DIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLLL 692

Query: 480 REMRKNGLNPDAVTWRIL 497
                +G  P+ VTW IL
Sbjct: 693 SRGVDSGFIPNEVTWYIL 710



 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 122/509 (23%), Positives = 224/509 (44%), Gaps = 50/509 (9%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D+L           L   MK  G V     +  ++  Y R G    A ++  +MR  GV
Sbjct: 118 IDKLGAAGEFKTIDALLMQMKQEGIVFRESLFILIMKHYGRAGLPGQATRLLLDMR--GV 175

Query: 61  L---PNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCRE 117
               P   +Y+V++  +L     +    + +++  +      +S     F  ++ +LC  
Sbjct: 176 YSCEPTFRSYNVVLDVLLAGNCPKVVPNVFYEMLSK-----GISPTVYTFGVVMKALCLV 230

Query: 118 GYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
             V+    + +DM +   V        +I +L + GR +   +++  M   G  P + ++
Sbjct: 231 NEVDSACALLKDMTRHGCVPNAIVYQTLIHALXKVGRVNEVLKLLEEMLLMGCIPDVNTF 290

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
           N  +HGLCK      A +L++  +  G+ P+  TY VL+ GLC    +++AR +L     
Sbjct: 291 NDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLLN---- 346

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
                               K P                P+V+  NT+ING+   GR++E
Sbjct: 347 --------------------KVP---------------NPNVVLFNTLINGYVSRGRLDE 371

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           A  V+++ +    C PD  T+ T+I GL   G +  A  L+ + M  +G  P ++TY  +
Sbjct: 372 AKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNE-MQIKGCEPNVITYTIL 430

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 417
           +    +  R+EEA+ V + M G G+  ++  Y  +I  LC+  ++ +A   + D+     
Sbjct: 431 IDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGC 490

Query: 418 IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQ 477
             D + + ++I GLC+  K  EA+    +++  GV  N + YN +I    +    +EA +
Sbjct: 491 KPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALK 550

Query: 478 ILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           ++ +M   G   D +T+  L K     GN
Sbjct: 551 LVNDMLFRGCPLDDITYNGLIKALCRAGN 579



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 113/223 (50%), Gaps = 5/223 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC +++  EA  L+ DM   G + N ++Y TLIH + R G M  A K+ ++M   G   +
Sbjct: 504 LCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLD 563

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY+ L++ + R  ++E+       L+E M  +  L+ NN +   L++ LCR G +   
Sbjct: 564 DITYNGLIKALCRAGNIEKG----LALFEDMMSK-GLNPNNISCNILINGLCRTGNIQHA 618

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
                DM       +      +I+ LC++GR   A  +   ++  G+ P  ++YN+++  
Sbjct: 619 LEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISW 678

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLE 226
            CK G    A+ LL  G+  G++P+E T+ +LV     E D E
Sbjct: 679 HCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFIKEGDQE 721


>gi|297848852|ref|XP_002892307.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis
            lyrata subsp. lyrata]
 gi|297338149|gb|EFH68566.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 1164

 Score =  221 bits (563), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 135/489 (27%), Positives = 236/489 (48%), Gaps = 46/489 (9%)

Query: 4    LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            +C L R+ EAH L   M+ +G+ P+V+SY+T+I+GYCR GE+D  +K+ ++M+  G+ PN
Sbjct: 679  VCQLGRINEAHHLLLLMELKGYTPDVISYSTVINGYCRFGELDKVWKLIEKMKQKGLKPN 738

Query: 64   SLTYSVLVRGVLRTRDVERANVLMFKLWERMKE--EEDLSVNNAAFANLVDSLCREGYVN 121
            S TY  ++  + R   +  A        E   E   + +  +   +  LVD  C+ G + 
Sbjct: 739  SYTYGSIIGLLCRICKLAEAE-------EAFSEMIGQGILPDTIVYTTLVDGFCKRGDIR 791

Query: 122  EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
               +   +M       +      +I   C+ G    A ++ + M  RGL P ++++  ++
Sbjct: 792  AASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMLCRGLEPDIITFTELM 851

Query: 182  HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
            +G CK G    A+++    IQ G  P+  TY  L++GLC E DL+ A ++L         
Sbjct: 852  NGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLH-------- 903

Query: 242  DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
                                        M +   QP++ T N+++NG CK G IEEA+K+
Sbjct: 904  ---------------------------EMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKL 936

Query: 302  LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
            + +  A    A D VT+TT++      G + +A  +L +++  +G  P IVT+N ++ G 
Sbjct: 937  VGEFEAAGLNA-DTVTYTTLMDAYCKSGEMDKAQEILTEML-GKGLQPTIVTFNVLMNGF 994

Query: 362  FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
                 +E+ +++ N ML  G+  ++TT+  ++   C  N L  A   + D+       D 
Sbjct: 995  CLHGMLEDGEKLLNWMLAKGIAPNATTFNCLVKQYCIRNNLKAATAIYKDMCSRGVEPDG 1054

Query: 422  YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
              Y  ++KG C +  + EA     E+   G + ++  Y+V+I G  K     EA +I  +
Sbjct: 1055 KTYENLVKGHCNARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFFKRKKFVEAREIFDQ 1114

Query: 482  MRKNGLNPD 490
            MR++GL  D
Sbjct: 1115 MRRDGLAAD 1123



 Score =  194 bits (493), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 116/413 (28%), Positives = 210/413 (50%), Gaps = 13/413 (3%)

Query: 4    LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            LC + ++ EA + F +M  +G +P+ + YTTL+ G+C+ G++  A K F EM    + P+
Sbjct: 749  LCRICKLAEAEEAFSEMIGQGILPDTIVYTTLVDGFCKRGDIRAASKFFYEMHSRDITPD 808

Query: 64   SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             LTY+ ++ G  +  D+  A  L  ++  R  E + ++     F  L++  C+ G++ + 
Sbjct: 809  VLTYTAIISGFCQIGDMVEAGKLFHEMLCRGLEPDIIT-----FTELMNGYCKAGHIKDA 863

Query: 124  FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            FR+   M Q            +ID LC+ G    A+ +++ M K GL P++ +YNSIV+G
Sbjct: 864  FRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNG 923

Query: 184  LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            LCK G    A +L+ E    G      TY  L++  C   +++KA+++L  ML K     
Sbjct: 924  LCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILTEMLGKGLQPT 983

Query: 244  TRICNIYLRALCL---IKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                N+ +   CL   +++  +LLN   +ML     P+  T N ++  +C    ++ A  
Sbjct: 984  IVTFNVLMNGFCLHGMLEDGEKLLN---WMLAKGIAPNATTFNCLVKQYCIRNNLKAATA 1040

Query: 301  VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
            +  DM + +   PD  T+  ++ G  N   ++EA   L+Q M  +G+S  + TY+ +++G
Sbjct: 1041 IYKDMCS-RGVEPDGKTYENLVKGHCNARNMKEAW-FLFQEMKGKGFSVSVSTYSVLIKG 1098

Query: 361  LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413
             F+ ++  EA+E+F+ M   G+ AD   +    D   +  + D      D+I+
Sbjct: 1099 FFKRKKFVEAREIFDQMRRDGLAADKEIFDFFSDTKYKGKRPDTIVDPIDEII 1151



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 131/502 (26%), Positives = 233/502 (46%), Gaps = 13/502 (2%)

Query: 10   VGEAHKLFFDM-----KSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
            V E+   FFD+     K  G  P V  +          G +  A KVF++M + G++ + 
Sbjct: 576  VTESFVQFFDLLVYTYKDWGSDPRV--FDVFFQVLVEFGMLPEARKVFEKMLNYGLVLSV 633

Query: 65   LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
             + +V +  + +  +     +++F    R   E  +  N A++  ++  +C+ G +NE  
Sbjct: 634  DSCNVYLARLSKDCNKTATAIIVF----REFPEVGVCWNVASYNIVIHFVCQLGRINEAH 689

Query: 125  RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
             +   M       +  +   +I+  CR G      +++  M+++GL P+  +Y SI+  L
Sbjct: 690  HLLLLMELKGYTPDVISYSTVINGYCRFGELDKVWKLIEKMKQKGLKPNSYTYGSIIGLL 749

Query: 185  CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
            C+      A +   E I  G LP    Y  LV+G C   D+  A K    M S+      
Sbjct: 750  CRICKLAEAEEAFSEMIGQGILPDTIVYTTLVDGFCKRGDIRAASKFFYEMHSRDITPDV 809

Query: 245  RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
                  +   C I +  E   +   ML    +PD+IT   ++NG+CK G I++A +V N 
Sbjct: 810  LTYTAIISGFCQIGDMVEAGKLFHEMLCRGLEPDIITFTELMNGYCKAGHIKDAFRVHNH 869

Query: 305  MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
            M+    C+P+ VT+TT+I GL   G +  A  LL++ M + G  P I TYN+++ GL + 
Sbjct: 870  MIQAG-CSPNVVTYTTLIDGLCKEGDLDSANELLHE-MWKIGLQPNIFTYNSIVNGLCKS 927

Query: 365  RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY 424
              +EEA ++       G+ AD+ TY  ++D  C+S ++D+A+    +++          +
Sbjct: 928  GNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTF 987

Query: 425  AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484
              ++ G C  G + +    L  ++  G+ PN   +N ++   C  +  + A  I ++M  
Sbjct: 988  NVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNCLVKQYCIRNNLKAATAIYKDMCS 1047

Query: 485  NGLNPDAVTWRILDKLHGNRGN 506
             G+ PD  T+  L K H N  N
Sbjct: 1048 RGVEPDGKTYENLVKGHCNARN 1069



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/305 (23%), Positives = 135/305 (44%), Gaps = 40/305 (13%)

Query: 1    MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
            M+  C    + +A ++   M   G  PNVV+YTTLI G C+ G++D A ++  EM   G+
Sbjct: 851  MNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGL 910

Query: 61   LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             PN  TY+ +V G+ ++ ++E A  L+ +      E   L+ +   +  L+D+ C+ G +
Sbjct: 911  QPNIFTYNSIVNGLCKSGNIEEAVKLVGEF-----EAAGLNADTVTYTTLMDAYCKSGEM 965

Query: 121  NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            ++                                   A  ++  M  +GL P++V++N +
Sbjct: 966  DK-----------------------------------AQEILTEMLGKGLQPTIVTFNVL 990

Query: 181  VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
            ++G C HG      +LL   +  G  P+  T+  LV+  C  ++L+ A  + + M S+  
Sbjct: 991  MNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNCLVKQYCIRNNLKAATAIYKDMCSRGV 1050

Query: 241  VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                +     ++  C  +N  E   +   M        V T + +I GF K  +  EA +
Sbjct: 1051 EPDGKTYENLVKGHCNARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFFKRKKFVEARE 1110

Query: 301  VLNDM 305
            + + M
Sbjct: 1111 IFDQM 1115


>gi|359473390|ref|XP_002268680.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Vitis vinifera]
          Length = 748

 Score =  221 bits (563), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 139/502 (27%), Positives = 243/502 (48%), Gaps = 42/502 (8%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC L RV EAH+L   M+ RG +P+V+SY+T+I+GYC+ GE+    K+ +EM+  G+ PN
Sbjct: 263 LCQLGRVVEAHQLLLQMELRGCIPDVISYSTVINGYCQVGELQRVLKLIEEMQIKGLKPN 322

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             TY+ ++  + +T  V  A  ++     R    E ++ +   +  L+D  C+ G V+  
Sbjct: 323 PYTYNGVILLLCKTGKVAEAERVL-----REMISEGIAPDGVIYTTLIDGFCKLGNVSSA 377

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           +R+ ++M + K   +      +I  LC++GR   A ++ + M  + L P  V+Y +++ G
Sbjct: 378 YRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDG 437

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK G    A+ L  + +Q G  P+  TY  L +GLC   +++ A ++L  M  K     
Sbjct: 438 YCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKG---- 493

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                                           + ++ T N+++NG CK G I++A+K++ 
Sbjct: 494 -------------------------------LELNIYTYNSLVNGLCKAGNIDQAVKLMK 522

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           DM    F  PDAVT+TT++        +  A  LL Q M  R   P +VT+N ++ G   
Sbjct: 523 DMEVAGF-HPDAVTYTTLMDAYCKSREMVRAHELLRQ-MLDRELQPTVVTFNVLMNGFCM 580

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
              +E+ +++   ML  G++ ++TTY  +I   C  N +      +  +     + D   
Sbjct: 581 SGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNT 640

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y  +IKG C++  + EA     ++V  G    +  YN +I G  K     EA ++  +MR
Sbjct: 641 YNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVSSYNALIKGFYKRKKFLEARELFEQMR 700

Query: 484 KNGLNPDAVTWRILDKLHGNRG 505
           + GL  D   + I   ++ + G
Sbjct: 701 REGLVADREIYNIFADINYDEG 722



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 109/359 (30%), Positives = 191/359 (53%), Gaps = 2/359 (0%)

Query: 148 SLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLP 207
           SLC+ GR   A +++  M  RG  P ++SY+++++G C+ G   R  +L+EE    G  P
Sbjct: 262 SLCQLGRVVEAHQLLLQMELRGCIPDVISYSTVINGYCQVGELQRVLKLIEEMQIKGLKP 321

Query: 208 SEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVL 267
           + +TY  ++  LC    + +A +VL+ M+S+       I    +   C + N +    + 
Sbjct: 322 NPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLF 381

Query: 268 VFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLN 327
             M + +  PD IT   VI G C+ GR+ EA K+ ++MV  +   PD VT+T +I G   
Sbjct: 382 DEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRL-EPDEVTYTALIDGYCK 440

Query: 328 VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADST 387
            G+++EA +L  Q M Q G +P IVTY A+  GL +   V+ A E+ + M   G+  +  
Sbjct: 441 EGKMKEAFSLHNQ-MLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIY 499

Query: 388 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYEL 447
           TY  +++GLC++  +D+A +   D+       D   Y  ++   C+S ++  A   L ++
Sbjct: 500 TYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQM 559

Query: 448 VDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           +D  + P +V +NV+++G C   M  +  ++L+ M + G+ P+A T+  L K +  R N
Sbjct: 560 LDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNN 618



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 103/381 (27%), Positives = 186/381 (48%), Gaps = 11/381 (2%)

Query: 120 VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           V ++   ++D+   + + ++F     +D     G  H   +++Y  +  G  P +  ++ 
Sbjct: 132 VAQIATASKDLKMARKLIQDFWVNPNLDVGVSFG--HFVEQLIYTYKDWGSDPRV--FDI 187

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
               L + G    A +L ++ + +G L S  +  + +  L    DL+  +  L+  +   
Sbjct: 188 FFQVLVEAGMLDEARKLFDKMLNYGLLISVDSCNLFISHL--SEDLDGIKIALKVFVEFP 245

Query: 240 DVD---RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIE 296
           +V     T   NI   +LC +    E   +L+ M    C PDVI+ +TVING+C++G ++
Sbjct: 246 EVGVCWNTASYNIITHSLCQLGRVVEAHQLLLQMELRGCIPDVISYSTVINGYCQVGELQ 305

Query: 297 EALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
             LK++ +M   K   P+  T+  +I  L   G++ EA  +L +++ + G +P  V Y  
Sbjct: 306 RVLKLIEEMQI-KGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISE-GIAPDGVIYTT 363

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416
           ++ G  +L  V  A  +F+ M    +  D  TY  VI GLC++ ++ EA + + ++V   
Sbjct: 364 LIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKR 423

Query: 417 NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAY 476
              D   Y A+I G C+ GK+ EA     +++  G+TPNIV Y  + DG CK      A 
Sbjct: 424 LEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTAN 483

Query: 477 QILREMRKNGLNPDAVTWRIL 497
           ++L EM + GL  +  T+  L
Sbjct: 484 ELLHEMCRKGLELNIYTYNSL 504


>gi|357477565|ref|XP_003609068.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
 gi|355510123|gb|AES91265.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
          Length = 932

 Score =  221 bits (562), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 148/534 (27%), Positives = 255/534 (47%), Gaps = 45/534 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M+ L       +AHK++  MK +    +V +YT  I  +CRTG    A ++   M   G 
Sbjct: 197 MNILVEFGYFNQAHKVYMRMKDKKVESDVYTYTIRIKSFCRTGRPYAALRLLRNMPVLGC 256

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             N++ Y  +V G     D +RA  L  ++ E       L  +   F  LV +LC++G+V
Sbjct: 257 FSNAVAYCTVVTGFYEFGDNDRARELFDEMLECC-----LCPDVTTFNKLVHALCKKGFV 311

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E  R+ + + +       F     I  LC+ G    A R++  + + GL P +V+YN++
Sbjct: 312 LESERLFDKVLKRGVCPNLFTFNIFIQGLCKEGSLDRAVRLLGCVSREGLRPDVVTYNTV 371

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK- 239
           + GLC+    + A + L + +  G+ P++ TY  +++G C +  +  A ++L+  + K  
Sbjct: 372 ICGLCRKSRVVEAEECLHKMVNGGFEPNDFTYNSIIDGYCKKGMVVDANRILKDAVFKGF 431

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
             D    C++ +   C   +P + + V    L    +P +I  NT+I G C+ G I  AL
Sbjct: 432 KPDEFTYCSL-VNGFCQDGDPDQAMAVFKDGLGKGLRPSIIVYNTLIKGLCQQGLILPAL 490

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           +++N+M A K C PD  T+  II GL  +G + +A +L+   +  +G  P I TYN ++ 
Sbjct: 491 QLMNEM-AEKGCKPDIWTYNLIINGLCKMGCLSDANHLIGDAI-TKGCIPDIFTYNTLVD 548

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
           G  R  +++ A E+ N M   G+  D  TY  +++GLC++ + +E    +  +       
Sbjct: 549 GYCRQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGLCKTAKSEEVMEIFKAMTEKGCAP 608

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           +   Y  +I+ LC S K++EAV  L E+   G+TP++V +  +I G CK+     AY + 
Sbjct: 609 NIITYNTIIESLCNSKKVNEAVDLLGEMKSKGLTPDVVSFGTLITGFCKVGDLDGAYGLF 668

Query: 480 R------------------------------------EMRKNGLNPDAVTWRIL 497
           R                                    EM+KNG +PD  T+R+L
Sbjct: 669 RGMEKQYDVSHTTATYNIIISAFSEQLNMKMALRLFSEMKKNGCDPDNYTYRVL 722



 Score =  215 bits (547), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 135/490 (27%), Positives = 240/490 (48%), Gaps = 8/490 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC    V E+ +LF  +  RG  PN+ ++   I G C+ G +D A ++   +   G+ P+
Sbjct: 305 LCKKGFVLESERLFDKVLKRGVCPNLFTFNIFIQGLCKEGSLDRAVRLLGCVSREGLRPD 364

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY+ ++ G+ R   V  A   + K+     E  D + N+     ++D  C++G V + 
Sbjct: 365 VVTYNTVICGLCRKSRVVEAEECLHKMVNGGFEPNDFTYNS-----IIDGYCKKGMVVDA 419

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            RI +D        +EF    +++  C+ G    A  V      +GL PS++ YN+++ G
Sbjct: 420 NRILKDAVFKGFKPDEFTYCSLVNGFCQDGDPDQAMAVFKDGLGKGLRPSIIVYNTLIKG 479

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LC+ G  + A QL+ E  + G  P   TY +++ GLC    L  A  ++   ++K  +  
Sbjct: 480 LCQQGLILPALQLMNEMAEKGCKPDIWTYNLIINGLCKMGCLSDANHLIGDAITKGCIPD 539

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               N  +   C        + ++  M      PDVIT NT++NG CK  + EE +++  
Sbjct: 540 IFTYNTLVDGYCRQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGLCKTAKSEEVMEIFK 599

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            M   K CAP+ +T+ TII  L N  ++ EA++LL + M  +G +P +V++  ++ G  +
Sbjct: 600 AMTE-KGCAPNIITYNTIIESLCNSKKVNEAVDLLGE-MKSKGLTPDVVSFGTLITGFCK 657

Query: 364 LRRVEEAKEVFNCMLGIGVVADST-TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
           +  ++ A  +F  M     V+ +T TY I+I    E   +  A R + ++       DNY
Sbjct: 658 VGDLDGAYGLFRGMEKQYDVSHTTATYNIIISAFSEQLNMKMALRLFSEMKKNGCDPDNY 717

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
            Y  +I G C++G +++   FL E ++ G  P++  +  V++  C     +EA  I+  M
Sbjct: 718 TYRVLIDGFCKTGNVNQGYKFLLENIEKGFIPSLTTFGRVLNCLCVEHKVQEAVGIIHLM 777

Query: 483 RKNGLNPDAV 492
            +  + PD V
Sbjct: 778 VQKDIVPDTV 787



 Score =  205 bits (522), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 146/540 (27%), Positives = 244/540 (45%), Gaps = 50/540 (9%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +   C   R   A +L  +M   G   N V+Y T++ G+   G+ D A ++FDEM  C +
Sbjct: 232 IKSFCRTGRPYAALRLLRNMPVLGCFSNAVAYCTVVTGFYEFGDNDRARELFDEMLECCL 291

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+  T++ LV  + +   V  +  L  K+ +R      +  N   F   +  LC+EG +
Sbjct: 292 CPDVTTFNKLVHALCKKGFVLESERLFDKVLKR-----GVCPNLFTFNIFIQGLCKEGSL 346

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +   R+   + +     +      +I  LCR  R   A   ++ M   G  P+  +YNSI
Sbjct: 347 DRAVRLLGCVSREGLRPDVVTYNTVICGLCRKSRVVEAEECLHKMVNGGFEPNDFTYNSI 406

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G CK G  + A ++L++ +  G+ P E TY  LV G C + D ++A  V +  L K  
Sbjct: 407 IDGYCKKGMVVDANRILKDAVFKGFKPDEFTYCSLVNGFCQDGDPDQAMAVFKDGLGKGL 466

Query: 241 VDRTRICNIYLRALC---LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
                + N  ++ LC   LI    +L+N    M +  C+PD+ T N +ING CKMG + +
Sbjct: 467 RPSIIVYNTLIKGLCQQGLILPALQLMNE---MAEKGCKPDIWTYNLIINGLCKMGCLSD 523

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           A  ++ D +  K C PD  T+ T++ G     ++  A+ L+ ++  Q G +P ++TYN +
Sbjct: 524 ANHLIGDAIT-KGCIPDIFTYNTLVDGYCRQLKLDSAIELVNRMWSQ-GMTPDVITYNTL 581

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 417
           L GL +  + EE  E+F  M   G   +  TY  +I+ LC S +++EA     ++     
Sbjct: 582 LNGLCKTAKSEEVMEIFKAMTEKGCAPNIITYNTIIESLCNSKKVNEAVDLLGEMKSKGL 641

Query: 418 IHDNYVYAAMIKGLCRSGKI------------------------------------HEAV 441
             D   +  +I G C+ G +                                      A+
Sbjct: 642 TPDVVSFGTLITGFCKVGDLDGAYGLFRGMEKQYDVSHTTATYNIIISAFSEQLNMKMAL 701

Query: 442 HFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW-RILDKL 500
               E+  +G  P+   Y V+IDG CK     + Y+ L E  + G  P   T+ R+L+ L
Sbjct: 702 RLFSEMKKNGCDPDNYTYRVLIDGFCKTGNVNQGYKFLLENIEKGFIPSLTTFGRVLNCL 761



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 114/466 (24%), Positives = 222/466 (47%), Gaps = 7/466 (1%)

Query: 32  YTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLW 91
           Y   +  Y R G++  A   F+ M      P+  +Y+ ++  ++      +A+    K++
Sbjct: 158 YVEAMRFYGRKGKIQEAVDTFERMDLFNCDPSVYSYNAIMNILVEFGYFNQAH----KVY 213

Query: 92  ERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCR 151
            RMK+++ +  +   +   + S CR G      R+  +MP     +   A   ++     
Sbjct: 214 MRMKDKK-VESDVYTYTIRIKSFCRTGRPYAALRLLRNMPVLGCFSNAVAYCTVVTGFYE 272

Query: 152 SGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHT 211
            G N  A  +   M +  L P + ++N +VH LCK G  + + +L ++ ++ G  P+  T
Sbjct: 273 FGDNDRARELFDEMLECCLCPDVTTFNKLVHALCKKGFVLESERLFDKVLKRGVCPNLFT 332

Query: 212 YKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFML 271
           + + ++GLC E  L++A ++L  +  +         N  +  LC      E    L  M+
Sbjct: 333 FNIFIQGLCKEGSLDRAVRLLGCVSREGLRPDVVTYNTVICGLCRKSRVVEAEECLHKMV 392

Query: 272 QTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRI 331
               +P+  T N++I+G+CK G + +A ++L D V   F  PD  T+ +++ G    G  
Sbjct: 393 NGGFEPNDFTYNSIIDGYCKKGMVVDANRILKDAVFKGF-KPDEFTYCSLVNGFCQDGDP 451

Query: 332 QEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAI 391
            +A+ +    +  +G  P I+ YN +++GL +   +  A ++ N M   G   D  TY +
Sbjct: 452 DQAMAVFKDGL-GKGLRPSIIVYNTLIKGLCQQGLILPALQLMNEMAEKGCKPDIWTYNL 510

Query: 392 VIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 451
           +I+GLC+   L +A     D +    I D + Y  ++ G CR  K+  A+  +  +   G
Sbjct: 511 IINGLCKMGCLSDANHLIGDAITKGCIPDIFTYNTLVDGYCRQLKLDSAIELVNRMWSQG 570

Query: 452 VTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           +TP+++ YN +++G CK +   E  +I + M + G  P+ +T+  +
Sbjct: 571 MTPDVITYNTLLNGLCKTAKSEEVMEIFKAMTEKGCAPNIITYNTI 616



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/314 (24%), Positives = 140/314 (44%), Gaps = 2/314 (0%)

Query: 186 KHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTR 245
           + G    A    E    F   PS ++Y  ++  L       +A KV   M  KK      
Sbjct: 167 RKGKIQEAVDTFERMDLFNCDPSVYSYNAIMNILVEFGYFNQAHKVYMRMKDKKVESDVY 226

Query: 246 ICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM 305
              I +++ C    P   L +L  M    C  + +   TV+ GF + G  + A ++ ++M
Sbjct: 227 TYTIRIKSFCRTGRPYAALRLLRNMPVLGCFSNAVAYCTVVTGFYEFGDNDRARELFDEM 286

Query: 306 VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLR 365
           +    C PD  TF  ++  L   G + E+  L  +V+ +RG  P + T+N  ++GL +  
Sbjct: 287 LECCLC-PDVTTFNKLVHALCKKGFVLESERLFDKVL-KRGVCPNLFTFNIFIQGLCKEG 344

Query: 366 RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYA 425
            ++ A  +  C+   G+  D  TY  VI GLC  +++ EA+     +V      +++ Y 
Sbjct: 345 SLDRAVRLLGCVSREGLRPDVVTYNTVICGLCRKSRVVEAEECLHKMVNGGFEPNDFTYN 404

Query: 426 AMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN 485
           ++I G C+ G + +A   L + V  G  P+   Y  +++G C+     +A  + ++    
Sbjct: 405 SIIDGYCKKGMVVDANRILKDAVFKGFKPDEFTYCSLVNGFCQDGDPDQAMAVFKDGLGK 464

Query: 486 GLNPDAVTWRILDK 499
           GL P  + +  L K
Sbjct: 465 GLRPSIIVYNTLIK 478



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 122/245 (49%), Gaps = 6/245 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C   ++  A +L   M S+G  P+V++Y TL++G C+T + +   ++F  M   G 
Sbjct: 547 VDGYCRQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGLCKTAKSEEVMEIFKAMTEKGC 606

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +TY+ ++  +  ++ V  A  L+ ++     + + L+ +  +F  L+   C+ G +
Sbjct: 607 APNIITYNTIIESLCNSKKVNEAVDLLGEM-----KSKGLTPDVVSFGTLITGFCKVGDL 661

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHG-ASRVVYVMRKRGLTPSLVSYNS 179
           +  + +   M +   V+   A  ++I S      N   A R+   M+K G  P   +Y  
Sbjct: 662 DGAYGLFRGMEKQYDVSHTTATYNIIISAFSEQLNMKMALRLFSEMKKNGCDPDNYTYRV 721

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++ G CK G   + Y+ L E I+ G++PS  T+  ++  LC E  +++A  ++  M+ K 
Sbjct: 722 LIDGFCKTGNVNQGYKFLLENIEKGFIPSLTTFGRVLNCLCVEHKVQEAVGIIHLMVQKD 781

Query: 240 DVDRT 244
            V  T
Sbjct: 782 IVPDT 786


>gi|449495714|ref|XP_004159923.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  221 bits (562), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 142/513 (27%), Positives = 256/513 (49%), Gaps = 22/513 (4%)

Query: 13  AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVR 72
           A  +F +M   G  PNV +Y  LI G+C  G +++    F EM   G LPN +TY+ ++ 
Sbjct: 187 AEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLXFFGEMERNGCLPNVVTYNTIID 246

Query: 73  GVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQ 132
              + R +  A    FKL  R+   + L+ N  ++  +++ LCREG + E   I E+M +
Sbjct: 247 AYCKLRKIGEA----FKLL-RLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSK 301

Query: 133 GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMR 192
            + V +      +I+  C  G  H A  +   M K GL+P++V+Y ++++ +CK G   R
Sbjct: 302 RRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNR 361

Query: 193 AYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLR 252
           A + L++    G  P+  TY  L++G   +  L++A ++++ M+           N  + 
Sbjct: 362 AMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALIN 421

Query: 253 ALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCA 312
             C++    +   +L  M++    PDV++ +T+I+GFC+   +E+A ++  +MVA K  +
Sbjct: 422 GHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVA-KGIS 480

Query: 313 PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKE 372
           PD  T++++I GL    R+ E  + L+Q M   G  P  VTY +++        +++A  
Sbjct: 481 PDVATYSSLIQGLCKQRRLGEVCD-LFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALR 539

Query: 373 VFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY-------- 424
           + + M+  G   D  TY ++I+G  + ++  EAKR    +++  ++ +   Y        
Sbjct: 540 LHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDNCN 599

Query: 425 -------AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQ 477
                   A++KG C  G ++EA   L  ++  G   N   YNV+I G  K+    +AY 
Sbjct: 600 NLEFKSALALMKGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYN 659

Query: 478 ILREMRKNGLNPDAVTWRILDKLHGNRGNDFGL 510
           + +EM  +G  P +VT   L K   + G +  L
Sbjct: 660 LYKEMLHSGFAPHSVTIMALAKSLYHEGKEVEL 692



 Score =  202 bits (515), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 140/532 (26%), Positives = 245/532 (46%), Gaps = 83/532 (15%)

Query: 21  KSRGHVPNVVSYTTLIHGYCRTGE-MDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           KS G +P V+SY  ++    RT + + +A  +F EM   GV PN  TY++L+RG     +
Sbjct: 159 KSYGFMPGVLSYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGN 218

Query: 80  VERA--------------NVLMF-----------KLWE-----RMKEEEDLSVNNAAFAN 109
           +E                NV+ +           K+ E     R+   + L+ N  ++  
Sbjct: 219 LEMGLXFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNV 278

Query: 110 LVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRG 169
           +++ LCREG + E   I E+M + + V +      +I+  C  G  H A  +   M K G
Sbjct: 279 VINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNG 338

Query: 170 LTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKAR 229
           L+P++V+Y ++++ +CK G   RA + L++    G  P+  TY  L++G   +  L++A 
Sbjct: 339 LSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAY 398

Query: 230 KVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGF 289
           ++++                                    M++    P +IT N +ING 
Sbjct: 399 QIMK-----------------------------------EMVENGFTPTIITYNALINGH 423

Query: 290 CKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSP 349
           C +GR+E+A  +L +M+   F  PD V+++TII G      +++A  L  + M  +G SP
Sbjct: 424 CILGRMEDASGLLQEMIERGFI-PDVVSYSTIISGFCRNQELEKAFQLKVE-MVAKGISP 481

Query: 350 GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFW 409
            + TY+++++GL + RR+ E  ++F  ML +G+  D  TY  +I+  C    LD+A R  
Sbjct: 482 DVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLH 541

Query: 410 DDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID----- 464
           D+++      D   Y  +I G  +  +  EA   L +L+     PN + YN +ID     
Sbjct: 542 DEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNNL 601

Query: 465 ----------GACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
                     G C   +  EA ++L  M + G   +   + ++   H   GN
Sbjct: 602 EFKSALALMKGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGN 653



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 128/512 (25%), Positives = 240/512 (46%), Gaps = 39/512 (7%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C L ++GEA KL   M  +G  PN++SY  +I+G CR G+M    ++ +EM     
Sbjct: 245 IDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRY 304

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P+ +T++ L+ G     +  +A VL  ++ +       LS N   +  L++S+C+ G +
Sbjct: 305 VPDRVTFNTLINGYCNVGNFHQALVLHAEMVKN-----GLSPNVVTYTTLINSMCKAGNL 359

Query: 121 NEVFRIAEDM------PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSL 174
           N      + M      P G++         +ID   + G    A +++  M + G TP++
Sbjct: 360 NRAMEFLDQMRDRGLHPNGRTYTT------LIDGFSQQGFLKQAYQIMKEMVENGFTPTI 413

Query: 175 VSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQF 234
           ++YN++++G C  G    A  LL+E I+ G++P   +Y  ++ G C   +LEKA ++   
Sbjct: 414 ITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVE 473

Query: 235 MLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGR 294
           M++K         +  ++ LC  +   E+ ++   ML     PD +T  ++IN +C  G 
Sbjct: 474 MVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGD 533

Query: 295 IEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTY 354
           +++AL++ ++M+   F +PD VT+  +I G     R +EA  LL +++ +    P  +TY
Sbjct: 534 LDKALRLHDEMIQKGF-SPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESV-PNEITY 591

Query: 355 NAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVW 414
           N ++     L         F   L +            + G C    ++EA R  + ++ 
Sbjct: 592 NTLIDNCNNLE--------FKSALAL------------MKGFCMKGLMNEADRVLESMLQ 631

Query: 415 PSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKRE 474
                +  VY  +I G  + G I +A +   E++ SG  P+ V    +         + E
Sbjct: 632 KGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSGFAPHSVTIMALAKSLYHEGKEVE 691

Query: 475 AYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
             Q+L    K+    +A   ++L  ++   GN
Sbjct: 692 LNQLLDYTLKSCRITEAALAKVLIGINSKEGN 723



 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 123/485 (25%), Positives = 239/485 (49%), Gaps = 19/485 (3%)

Query: 17  FFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLR 76
           ++  KS   V ++V     +    R   ++ A  + +  +  G +P  L+Y+ ++  V+R
Sbjct: 125 YYQCKSSSAVFDLV-----VKSCARVNLINKALSIVNLAKSYGFMPGVLSYNAILDAVIR 179

Query: 77  TRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSV 136
           T+   +    +FK       E  +S N   +  L+   C  G +        +M +   +
Sbjct: 180 TKQSVKIAEGIFKEM----VESGVSPNVYTYNILIRGFCTAGNLEMGLXFFGEMERNGCL 235

Query: 137 NEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQL 196
                   +ID+ C+  +   A +++ +M  +GL P+L+SYN +++GLC+ G      ++
Sbjct: 236 PNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEI 295

Query: 197 LEEGIQFGYLPSEHTYKVLVEGLCGESDLEKA----RKVLQFMLSKKDVDRTRICNIYLR 252
           LEE  +  Y+P   T+  L+ G C   +  +A     ++++  LS   V  T + N    
Sbjct: 296 LEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLIN---- 351

Query: 253 ALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCA 312
           ++C   N    +  L  M      P+  T  T+I+GF + G +++A +++ +MV   F  
Sbjct: 352 SMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGF-T 410

Query: 313 PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKE 372
           P  +T+  +I G   +GR+++A  LL Q M +RG+ P +V+Y+ ++ G  R + +E+A +
Sbjct: 411 PTIITYNALINGHCILGRMEDASGLL-QEMIERGFIPDVVSYSTIISGFCRNQELEKAFQ 469

Query: 373 VFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLC 432
           +   M+  G+  D  TY+ +I GLC+  +L E    + +++      D   Y ++I   C
Sbjct: 470 LKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYC 529

Query: 433 RSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAV 492
             G + +A+    E++  G +P+IV YNV+I+G  K S  +EA ++L ++      P+ +
Sbjct: 530 IEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEI 589

Query: 493 TWRIL 497
           T+  L
Sbjct: 590 TYNTL 594



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/318 (25%), Positives = 149/318 (46%), Gaps = 22/318 (6%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C L R+ +A  L  +M  RG +P+VVSY+T+I G+CR  E++ A+++  EM   G+ P+ 
Sbjct: 424 CILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDV 483

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
            TYS L++G+ + R +      +  L++ M     L  +   + +L+++ C EG +++  
Sbjct: 484 ATYSSLIQGLCKQRRLGE----VCDLFQEML-SLGLPPDEVTYTSLINAYCIEGDLDKAL 538

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV--- 181
           R+ ++M Q     +      +I+   +  R   A R++  +      P+ ++YN+++   
Sbjct: 539 RLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDNC 598

Query: 182 ------------HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKAR 229
                        G C  G    A ++LE  +Q GY  +E  Y V++ G     ++EKA 
Sbjct: 599 NNLEFKSALALMKGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAY 658

Query: 230 KVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGF 289
            + + ML       +       ++L       EL  +L + L++ C+     L  V+ G 
Sbjct: 659 NLYKEMLHSGFAPHSVTIMALAKSLYHEGKEVELNQLLDYTLKS-CRITEAALAKVLIGI 717

Query: 290 -CKMGRIEEALKVLNDMV 306
             K G ++    VL DM 
Sbjct: 718 NSKEGNMDAVFNVLKDMA 735



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 101/197 (51%), Gaps = 2/197 (1%)

Query: 311 CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR-VEE 369
           C   +  F  ++     V  I +AL+++  +    G+ PG+++YNA+L  + R ++ V+ 
Sbjct: 128 CKSSSAVFDLVVKSCARVNLINKALSIV-NLAKSYGFMPGVLSYNAILDAVIRTKQSVKI 186

Query: 370 AKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIK 429
           A+ +F  M+  GV  +  TY I+I G C +  L+    F+ ++     + +   Y  +I 
Sbjct: 187 AEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLXFFGEMERNGCLPNVVTYNTIID 246

Query: 430 GLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNP 489
             C+  KI EA   L  +   G+ PN++ YNVVI+G C+    +E  +IL EM K    P
Sbjct: 247 AYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVP 306

Query: 490 DAVTWRILDKLHGNRGN 506
           D VT+  L   + N GN
Sbjct: 307 DRVTFNTLINGYCNVGN 323


>gi|359497112|ref|XP_003635427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Vitis vinifera]
          Length = 740

 Score =  221 bits (562), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 150/498 (30%), Positives = 248/498 (49%), Gaps = 12/498 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M  LC ++ V  A  L  DM   G VPN + Y TLIH   + G ++   K+ +EM   G 
Sbjct: 242 MKALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALSKVGRVNEVLKLLEEMLLMGC 301

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P+  T++  + G+ +   +  A  L+ ++  R       + N+  +  L+  LCR G V
Sbjct: 302 IPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLR-----GFTPNSFTYGVLMHGLCRMGKV 356

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVY-VMRKRGLTPSLVSYNS 179
           +E   +   +P    V        +I+     GR   A  V++  M   G  P + +YN+
Sbjct: 357 DEARMLLNKVPNPNVV----LFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNT 412

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++ GLCK G  + A +L+ E    G  P+  TY +L++  C E  LE+AR VL  M  K 
Sbjct: 413 LILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKG 472

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                   N  + ALC  +   + LN+   M    C+PD+ T N++I G CK+ + EEAL
Sbjct: 473 LALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEAL 532

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
            +  DM+     A + +T+ T+I   L  G +QEAL L+  ++  RG     +TYN +++
Sbjct: 533 GLYQDMLLEGVIA-NTITYNTLIHAFLRRGAMQEALKLVNDML-FRGCPLDDITYNGLIK 590

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
            L R   +E+   +F  M+  G+  ++ +  I+I+GLC +  +  A  F  D++      
Sbjct: 591 ALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTP 650

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           D   Y ++I GLC++G+  EA++   +L   G+ P+ + YN +I   CK  M  +A+ +L
Sbjct: 651 DIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLLL 710

Query: 480 REMRKNGLNPDAVTWRIL 497
                +G  P+ VTW IL
Sbjct: 711 SRGVDSGFIPNEVTWYIL 728



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 122/509 (23%), Positives = 224/509 (44%), Gaps = 50/509 (9%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D+L           L   MK  G V     +  ++  Y R G    A ++  +MR  GV
Sbjct: 136 IDKLGAAGEFKTTDALLMQMKQEGIVFRESLFILIMKHYGRAGLPGQATRLLLDMR--GV 193

Query: 61  L---PNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCRE 117
               P   +Y+V++  +L     +    + +++  +      +S     F  ++ +LC  
Sbjct: 194 YSCEPTFRSYNVVLDVLLAGNCPKVVPNVFYEMLSK-----GISPTVYTFGVVMKALCLV 248

Query: 118 GYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
             V+    + +DM +   V        +I +L + GR +   +++  M   G  P + ++
Sbjct: 249 NEVDSACALLKDMTRHGCVPNAIVYQTLIHALSKVGRVNEVLKLLEEMLLMGCIPDVNTF 308

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
           N  +HGLCK      A +L++  +  G+ P+  TY VL+ GLC    +++AR +L     
Sbjct: 309 NDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLLN---- 364

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
                               K P                P+V+  NT+ING+   GR++E
Sbjct: 365 --------------------KVP---------------NPNVVLFNTLINGYVSRGRLDE 389

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           A  V+++ +    C PD  T+ T+I GL   G +  A  L+ + M  +G  P ++TY  +
Sbjct: 390 AKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNE-MQIKGCEPNVITYTIL 448

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 417
           +    +  R+EEA+ V + M G G+  ++  Y  +I  LC+  ++ +A   + D+     
Sbjct: 449 IDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGC 508

Query: 418 IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQ 477
             D + + ++I GLC+  K  EA+    +++  GV  N + YN +I    +    +EA +
Sbjct: 509 KPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALK 568

Query: 478 ILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           ++ +M   G   D +T+  L K     GN
Sbjct: 569 LVNDMLFRGCPLDDITYNGLIKALCRAGN 597



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 102/356 (28%), Positives = 172/356 (48%), Gaps = 10/356 (2%)

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE--GIQ 202
           +ID L  +G       ++  M++ G+      +  I+    + G   +A +LL +  G+ 
Sbjct: 135 LIDKLGAAGEFKTTDALLMQMKQEGIVFRESLFILIMKHYGRAGLPGQATRLLLDMRGV- 193

Query: 203 FGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTE 262
           +   P+  +Y V+++ L   +  +    V   MLSK          + ++ALCL+     
Sbjct: 194 YSCEPTFRSYNVVLDVLLAGNCPKVVPNVFYEMLSKGISPTVYTFGVVMKALCLVNEVDS 253

Query: 263 LLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTII 322
              +L  M +  C P+ I   T+I+   K+GR+ E LK+L +M+    C PD  TF   I
Sbjct: 254 ACALLKDMTRHGCVPNAIVYQTLIHALSKVGRVNEVLKLLEEMLLMG-CIPDVNTFNDAI 312

Query: 323 FGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGV 382
            GL  + RI EA  L+ +++  RG++P   TY  ++ GL R+ +V+EA+ + N +    V
Sbjct: 313 HGLCKMLRIHEAAKLVDRML-LRGFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVPNPNV 371

Query: 383 VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI-HDNYVYAAMIKGLCRSGKIHEAV 441
           V  +T    +I+G     +LDEAK    + +       D + Y  +I GLC+ G +  A 
Sbjct: 372 VLFNT----LINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSAR 427

Query: 442 HFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
             + E+   G  PN++ Y ++ID  CK     EA  +L EM   GL  +AV +  L
Sbjct: 428 ELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCL 483



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 113/223 (50%), Gaps = 5/223 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC +++  EA  L+ DM   G + N ++Y TLIH + R G M  A K+ ++M   G   +
Sbjct: 522 LCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLD 581

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY+ L++ + R  ++E+       L+E M  +  L+ NN +   L++ LCR G +   
Sbjct: 582 DITYNGLIKALCRAGNIEKG----LALFEDMMSK-GLNPNNISCNILINGLCRTGNIQHA 636

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
                DM       +      +I+ LC++GR   A  +   ++  G+ P  ++YN+++  
Sbjct: 637 LEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISW 696

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLE 226
            CK G    A+ LL  G+  G++P+E T+ +LV     E D E
Sbjct: 697 HCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFIKEGDQE 739


>gi|297737176|emb|CBI26377.3| unnamed protein product [Vitis vinifera]
          Length = 572

 Score =  221 bits (562), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 138/476 (28%), Positives = 237/476 (49%), Gaps = 9/476 (1%)

Query: 23  RGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVER 82
           RG  P+ V+ TTL+ G      +  A ++FDEM   G+  ++ TY +L+ G+ + R    
Sbjct: 71  RGFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTEKGLFGDAKTYGILINGLCKARKTG- 129

Query: 83  ANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFAC 142
              L  KL E+MK   +   +   +  ++DSLC++G   E   +  +M     + +    
Sbjct: 130 ---LAIKLHEKMKG--NCKGDVFTYGMIIDSLCKDGMTTEALDMFSEMIGAGILPDVVVY 184

Query: 143 GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQ 202
             ++D LCR GR   A      M  RG++  + +YNS++HGL + G        L   + 
Sbjct: 185 SSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVD 244

Query: 203 FGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTE 262
            G+ P   T+ +L++GLC E  + +A+++L+ M  K         N  +  LCL+    +
Sbjct: 245 RGFSPDAFTFTILIDGLCKEGKVGEAQQILELMHHKGKEPDILTYNTLMNGLCLVGQLED 304

Query: 263 LLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTII 322
              +   +     + +V + N +ING+CK  +I+EA ++  +M   K   P  VT+ T+I
Sbjct: 305 ATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRLFEEMRP-KGLKPSTVTYNTLI 363

Query: 323 FGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGV 382
             L   GR++ A  L  + M   G    + TY  +L GL +   +EEA ++F  +     
Sbjct: 364 GALCQSGRVRTAQKLFVE-MQTCGQFLKLSTYCVLLDGLCKNGHLEEAIDLFQSIKKTEH 422

Query: 383 VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVH 442
             +   ++I++DG+C + +L+EA + +D+I       D   Y  +I GLC  G + EAV 
Sbjct: 423 KPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVK 482

Query: 443 FLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD-AVTWRIL 497
            L+++ + G  P+ + +NV+I    K +   EA Q+L EMR    +PD AVT  +L
Sbjct: 483 LLWQMEEKGCLPDSITFNVIIQNLLKENEIHEAIQLLEEMRNRNFSPDEAVTSMLL 538



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 104/393 (26%), Positives = 191/393 (48%), Gaps = 7/393 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC      EA  +F +M   G +P+VV Y++L+ G CR G +  A + F EM   G+
Sbjct: 153 IDSLCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGI 212

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             +  TY+ L+ G+ R    +     +  + +R       S +   F  L+D LC+EG V
Sbjct: 213 SADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDR-----GFSPDAFTFTILIDGLCKEGKV 267

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E  +I E M       +      +++ LC  G+   A+++   +  RG+  ++ SYN +
Sbjct: 268 GEAQQILELMHHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNIL 327

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++G CK      A++L EE    G  PS  TY  L+  LC    +  A+K+   M +   
Sbjct: 328 INGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQ 387

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
             +     + L  LC   +  E +++   + +T+ +P++   + +++G C+ G++EEA K
Sbjct: 388 FLKLSTYCVLLDGLCKNGHLEEAIDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWK 447

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
              D ++     PD + +  +I GL N G + EA+ LL+Q M ++G  P  +T+N +++ 
Sbjct: 448 QF-DEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQ-MEEKGCLPDSITFNVIIQN 505

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVI 393
           L +   + EA ++   M       D    ++++
Sbjct: 506 LLKENEIHEAIQLLEEMRNRNFSPDEAVTSMLL 538


>gi|449462483|ref|XP_004148970.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 917

 Score =  221 bits (562), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 137/553 (24%), Positives = 263/553 (47%), Gaps = 65/553 (11%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRH------ 57
           LC   R+ EA +LF  MK  G  P+ ++Y TL+ G C+TG++++A  +  EM +      
Sbjct: 280 LCMKHRISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYG 339

Query: 58  ------------------C------------------GVLPNSLTYSVLVRGVLRTRDVE 81
                             C                  G + + +TYS L++G+     + 
Sbjct: 340 IKCIRPDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRIS 399

Query: 82  RANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQG------KS 135
            A  L   +     ++     +   +  L+  LC+ G +N   ++ ++M         K 
Sbjct: 400 EATWLFMSM-----QKLGCRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKC 454

Query: 136 VNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQ 195
                +   +ID LC+  R   A  +   M+ +G+ P ++SY +++HG C  G   +A  
Sbjct: 455 KPTLISYSIIIDGLCKDRREDEARELFEEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKC 514

Query: 196 LLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALC 255
           L  E +  G  P   T  VL++ LC +  + +A K+L+ ++ +  +     C   ++ LC
Sbjct: 515 LFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCILDVVTCTTLVKGLC 574

Query: 256 LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA-----GKF 310
           +    ++   + + M +  C P+V+T  T++ G C+ G I+ AL++  +M++     G  
Sbjct: 575 MKHRISKATQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGIN 634

Query: 311 CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEA 370
           C P+A++++ II GL   GR  EA   L++ M   G  P +++Y +++ G  R  + ++A
Sbjct: 635 CKPNAISYSIIIDGLCKCGREDEARE-LFKEMKALGVIPDVISYTSLIHGFCRSGKWKDA 693

Query: 371 KEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKG 430
           K +FN M+ IGV  D TT++++ID LC+  ++ EA    + ++    I +   Y  ++KG
Sbjct: 694 KYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKG 753

Query: 431 LCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN----- 485
           LC + +I EA     ++   G  P++V Y  ++ G C+    + A ++ ++M  +     
Sbjct: 754 LCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYG 813

Query: 486 -GLNPDAVTWRIL 497
               PD +++ I+
Sbjct: 814 TNFKPDVISYSII 826



 Score =  218 bits (555), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 150/516 (29%), Positives = 263/516 (50%), Gaps = 22/516 (4%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C   +V EA++L   M  RG + ++V+Y+TLI G C    +  A ++F  M+  G 
Sbjct: 242 IDMFCKEGKVIEANELLEVMVHRGCILDIVTYSTLIKGLCMKHRISEATQLFMSMKKLGC 301

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSV-----NNAAFANLVDSLC 115
            P+++ Y  L++G+ +T  +   N+ +    E + +     +     +    + L+D LC
Sbjct: 302 RPDAIAYGTLMKGLCQTGKI---NIALHLHQEMLNDTSQYGIKCIRPDVTTSSMLIDILC 358

Query: 116 REGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLV 175
           +EG V E   + E M Q   + +      +I  LC   R   A+ +   M+K G  P  +
Sbjct: 359 KEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGCRPDAI 418

Query: 176 SYNSIVHGLCKHGGCMRAYQLLEEGI----QFGYL--PSEHTYKVLVEGLCGESDLEKAR 229
           +Y +++ GLC+ G    A QL +E +    ++G    P+  +Y ++++GLC +   ++AR
Sbjct: 419 TYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEAR 478

Query: 230 KVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGF 289
           ++ + M ++  +         +   CL     +   +   ML    QPDV T + +I+  
Sbjct: 479 ELFEEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLIDML 538

Query: 290 CKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSP 349
           CK G++ EA K+L ++V  + C  D VT TT++ GL    RI +A  L  + M + G  P
Sbjct: 539 CKKGKVIEANKLL-EVVIQRGCILDVVTCTTLVKGLCMKHRISKATQLFLK-MQKLGCMP 596

Query: 350 GIVTYNAVLRGLFRLRRVEEAKEVFNCML------GIGVVADSTTYAIVIDGLCESNQLD 403
            +VT   +++GL +   ++ A E+   ML      GI    ++ +Y+I+IDGLC+  + D
Sbjct: 597 NVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAISYSIIIDGLCKCGRED 656

Query: 404 EAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463
           EA+  + ++     I D   Y ++I G CRSGK  +A +   E+VD GV P++  ++V+I
Sbjct: 657 EARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLI 716

Query: 464 DGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
           D  CK     EA ++L  M + G  P+ VT+  L K
Sbjct: 717 DMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVK 752



 Score =  207 bits (527), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 141/518 (27%), Positives = 254/518 (49%), Gaps = 60/518 (11%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKV------------ 51
           LC   R+ EA  LF  M+  G  P+ ++Y TL+ G C+TG +++A ++            
Sbjct: 392 LCMEHRISEATWLFMSMQKLGCRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYG 451

Query: 52  -----------------------------FDEMRHCGVLPNSLTYSVLVRGVLRTRDVER 82
                                        F+EM+  G++P+ ++Y+ L+ G   +   E+
Sbjct: 452 IKCKPTLISYSIIIDGLCKDRREDEARELFEEMKAQGIMPDVISYTTLIHGFCLSGKWEK 511

Query: 83  ANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFAC 142
           A  L  ++ + +  + D++ ++     L+D LC++G V E  ++ E + Q   + +   C
Sbjct: 512 AKCLFNEMLD-VGIQPDVTTSSV----LIDMLCKKGKVIEANKLLEVVIQRGCILDVVTC 566

Query: 143 GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQL----LE 198
             ++  LC   R   A+++   M+K G  P++V+  +++ GLC+ G    A +L    L 
Sbjct: 567 TTLVKGLCMKHRISKATQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLS 626

Query: 199 EGIQFGY--LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCL 256
           +   +G    P+  +Y ++++GLC     ++AR++ + M +   +         +   C 
Sbjct: 627 DTSPYGINCKPNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCR 686

Query: 257 IKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAV 316
                +   +   M+    QPDV T + +I+  CK G++ EA ++L  M+  + C P+ V
Sbjct: 687 SGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQ-RGCIPNTV 745

Query: 317 TFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNC 376
           T+TT++ GL    RI EA  L  + M + G  P +VTY  +++GL +   ++ A E+   
Sbjct: 746 TYTTLVKGLCMNDRISEATQLFMK-MQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKK 804

Query: 377 ML------GIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKG 430
           ML      G     D  +Y+I+IDGLC+  + DEA+  + ++     I +   Y ++I G
Sbjct: 805 MLSDTGQYGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHG 864

Query: 431 LCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACK 468
            CRSGK+ +A H   E+VD GV  N V Y+V+I G CK
Sbjct: 865 FCRSGKLEDAKHLFNEMVDQGVQLNAVTYSVMIHGFCK 902



 Score =  205 bits (521), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 135/482 (28%), Positives = 228/482 (47%), Gaps = 77/482 (15%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   R  EA +LF +MK++G +P+V+SYTTLIHG+C +G+ + A  +F+EM   G+
Sbjct: 465 IDGLCKDRREDEARELFEEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGI 524

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWER-----------------MKEEEDLSV- 102
            P+  T SVL+  + +   V  AN L+  + +R                 MK     +  
Sbjct: 525 QPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCILDVVTCTTLVKGLCMKHRISKATQ 584

Query: 103 ------------NNAAFANLVDSLCREGYVNEVFRIAEDM-----PQGKSVN-EEFACGH 144
                       N    A L+  LC+ G +     + ++M     P G +      +   
Sbjct: 585 LFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAISYSI 644

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
           +ID LC+ GR   A  +   M+  G+ P ++SY S++HG C+ G    A  L  E +  G
Sbjct: 645 IIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIG 704

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL 264
             P   T+ VL++ LC E  + +A ++L+ M+                            
Sbjct: 705 VQPDVTTFSVLIDMLCKEGKVIEANELLEVMI---------------------------- 736

Query: 265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 324
                  Q  C P+ +T  T++ G C   RI EA ++   M     C PD VT+ T++ G
Sbjct: 737 -------QRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKM-QKLGCLPDVVTYGTLMKG 788

Query: 325 LLNVGRIQEALNLLYQVMPQRG-----YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
           L   G I+ AL L  +++   G     + P +++Y+ ++ GL +  R +EA+E+F  M  
Sbjct: 789 LCQTGNIKTALELHKKMLSDTGQYGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKA 848

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
           +GV+ +  +Y  +I G C S +L++AK  ++++V      +   Y+ MI G C+ G+I +
Sbjct: 849 LGVIPNVISYTSLIHGFCRSGKLEDAKHLFNEMVDQGVQLNAVTYSVMIHGFCKEGQIDK 908

Query: 440 AV 441
           A+
Sbjct: 909 AL 910



 Score =  198 bits (503), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 136/534 (25%), Positives = 248/534 (46%), Gaps = 41/534 (7%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTT---------LIHGYCRTGEMDVAYKVFDE 54
           LC + RV E       +  RG++P++V+Y+          LI   C+ G++  A ++ + 
Sbjct: 20  LCNVKRVNEGLAAMAGIMRRGYIPDIVTYSIRPDVTTSSMLIDILCKEGKVIEANELLEV 79

Query: 55  MRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSL 114
           M   G + + +TYS L++G+     +  A  L   +     ++     +   +  L+  L
Sbjct: 80  MIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSM-----QKLGCRPDAITYGTLMKGL 134

Query: 115 CREGYVNEVFRIAEDMPQG------KSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKR 168
           C+ G +N   ++ ++M         K      +   +ID LC+  R   A  +   M+ +
Sbjct: 135 CQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFKEMKAQ 194

Query: 169 GLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKA 228
           G+ P ++SY S++HG C  G   +A  L  E +  G  P   T  VL++  C E  + +A
Sbjct: 195 GMMPDVISYTSLIHGFCHSGKWEKAKCLFNEMLDVGIQPDVTTSGVLIDMFCKEGKVIEA 254

Query: 229 RKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVING 288
            ++L+ M+ +  +      +  ++ LC+    +E   + + M +  C+PD I   T++ G
Sbjct: 255 NELLEVMVHRGCILDIVTYSTLIKGLCMKHRISEATQLFMSMKKLGCRPDAIAYGTLMKG 314

Query: 289 FCKMGRIEEALKVLNDMVAG------KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVM 342
            C+ G+I  AL +  +M+        K   PD  T + +I  L   G++ EA N L +VM
Sbjct: 315 LCQTGKINIALHLHQEMLNDTSQYGIKCIRPDVTTSSMLIDILCKEGKVIEA-NELLEVM 373

Query: 343 PQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQL 402
            QRG    IVTY+ +++GL    R+ EA  +F  M  +G   D+ TY  ++ GLC++  +
Sbjct: 374 IQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGCRPDAITYGTLMKGLCQTGNI 433

Query: 403 DEAKRFWDDIV----------WPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGV 452
           + A +   +++           P+ I     Y+ +I GLC+  +  EA     E+   G+
Sbjct: 434 NIALQLHQEMLNDTGRYGIKCKPTLIS----YSIIIDGLCKDRREDEARELFEEMKAQGI 489

Query: 453 TPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
            P+++ Y  +I G C      +A  +  EM   G+ PD  T  +L  +   +G 
Sbjct: 490 MPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGK 543



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 93/354 (26%), Positives = 170/354 (48%), Gaps = 22/354 (6%)

Query: 165 MRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKV---------L 215
           MR  GL P   ++N +++ LC           +   ++ GY+P   TY +         L
Sbjct: 1   MRLAGLFPDSFTFNILINCLCNVKRVNEGLAAMAGIMRRGYIPDIVTYSIRPDVTTSSML 60

Query: 216 VEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQC 275
           ++ LC E  + +A ++L+ M+ +  +      +  ++ LC+    +E   + + M +  C
Sbjct: 61  IDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGC 120

Query: 276 QPDVITLNTVINGFCKMGRIEEALKVLNDMV--AGKF---CAPDAVTFTTIIFGLLNVGR 330
           +PD IT  T++ G C+ G I  AL++  +M+   G++   C P  ++++ II GL    R
Sbjct: 121 RPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRR 180

Query: 331 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYA 390
             EA  L ++ M  +G  P +++Y +++ G     + E+AK +FN ML +G+  D TT  
Sbjct: 181 EDEAREL-FKEMKAQGMMPDVISYTSLIHGFCHSGKWEKAKCLFNEMLDVGIQPDVTTSG 239

Query: 391 IVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 450
           ++ID  C+  ++ EA    + +V    I D   Y+ +IKGLC   +I EA      +   
Sbjct: 240 VLIDMFCKEGKVIEANELLEVMVHRGCILDIVTYSTLIKGLCMKHRISEATQLFMSMKKL 299

Query: 451 GVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG-------LNPDAVTWRIL 497
           G  P+ + Y  ++ G C+      A  + +EM  +        + PD  T  +L
Sbjct: 300 GCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCIRPDVTTSSML 353



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/267 (30%), Positives = 133/267 (49%), Gaps = 17/267 (6%)

Query: 248 NIYLRALCLIKNPTELLNVLVFMLQT---------QCQPDVITLNTVINGFCKMGRIEEA 298
           NI +  LC +K   E L  +  +++            +PDV T + +I+  CK G++ EA
Sbjct: 14  NILINCLCNVKRVNEGLAAMAGIMRRGYIPDIVTYSIRPDVTTSSMLIDILCKEGKVIEA 73

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
            ++L  M+  + C  D VT++T+I GL    RI EA   L+  M + G  P  +TY  ++
Sbjct: 74  NELLEVMIQ-RGCILDIVTYSTLIKGLCMEHRISEA-TWLFMSMQKLGCRPDAITYGTLM 131

Query: 359 RGLFRLRRVEEAKEVFNCML------GIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI 412
           +GL +   +  A ++   ML      GI       +Y+I+IDGLC+  + DEA+  + ++
Sbjct: 132 KGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFKEM 191

Query: 413 VWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMK 472
                + D   Y ++I G C SGK  +A     E++D G+ P++    V+ID  CK    
Sbjct: 192 KAQGMMPDVISYTSLIHGFCHSGKWEKAKCLFNEMLDVGIQPDVTTSGVLIDMFCKEGKV 251

Query: 473 REAYQILREMRKNGLNPDAVTWRILDK 499
            EA ++L  M   G   D VT+  L K
Sbjct: 252 IEANELLEVMVHRGCILDIVTYSTLIK 278



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 64/135 (47%), Gaps = 9/135 (6%)

Query: 381 GVVADSTTYAIVIDGLCESNQLDEA---------KRFWDDIVWPSNIHDNYVYAAMIKGL 431
           G+  DS T+ I+I+ LC   +++E          + +  DIV  S   D    + +I  L
Sbjct: 5   GLFPDSFTFNILINCLCNVKRVNEGLAAMAGIMRRGYIPDIVTYSIRPDVTTSSMLIDIL 64

Query: 432 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 491
           C+ GK+ EA   L  ++  G   +IV Y+ +I G C      EA  +   M+K G  PDA
Sbjct: 65  CKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGCRPDA 124

Query: 492 VTWRILDKLHGNRGN 506
           +T+  L K     GN
Sbjct: 125 ITYGTLMKGLCQTGN 139


>gi|359485438|ref|XP_003633275.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 572

 Score =  220 bits (561), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 142/508 (27%), Positives = 249/508 (49%), Gaps = 44/508 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C L+R+G A  +  D+   G+ P+  ++TTLI G C  G++  A ++FD+M   G 
Sbjct: 96  INSFCHLNRLGFAFSVLGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGEGF 155

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ LTY  L+ G+ +  +   A   +     R  E+ +       ++ ++DSLC++  +
Sbjct: 156 QPDVLTYGTLINGLCKVGNTSTAIRFL-----RSMEQRNCRPTVVVYSTIIDSLCKDRQL 210

Query: 121 NEVFRIAEDM-PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
            E   +  DM  +G S N  F    +I  LC  G    A R+ Y M  R + P  +++N+
Sbjct: 211 TEALSLFSDMLAKGISPNN-FTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNT 269

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           +V  LCK G  ++A+ +++  IQ    P   TY  L++G C  S++ K            
Sbjct: 270 LVDALCKEGMVVKAHYVVDVMIQSDLKPDVVTYNSLMDGHCLRSEMGKT----------- 318

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                                   +NV   M++  C P VI+  T+ING+CK+  +++A+
Sbjct: 319 ------------------------VNVFDTMVRKGCVPSVISYTTLINGYCKIQIMDKAM 354

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
            +  +M + +   PD VT+ T+I GL +VGR+++A+ L ++ M   G  P +VTY  +  
Sbjct: 355 GLFEEM-SQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHE-MVVYGQIPDLVTYRILFD 412

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
            L +  R+ EA  +   + G  +  D   Y+IV+DG+C + +L+ A+  +  +       
Sbjct: 413 YLCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAGELEAARDLFSKLSSKGLHP 472

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           D   Y  MI GLC+ G + EA     E+ ++G +PN   YN++  G  + +    A Q+ 
Sbjct: 473 DVRTYTIMINGLCQQGLLAEASKLFGEMDENGCSPNACTYNLITRGFLRNNETLRAIQLF 532

Query: 480 REMRKNGLNPDAVTWRILDKLHGNRGND 507
           +EM   G + D  T  +L ++  + G D
Sbjct: 533 QEMLSRGFSIDVSTTTLLVEMLSDDGLD 560



 Score =  161 bits (407), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 104/453 (22%), Positives = 215/453 (47%), Gaps = 7/453 (1%)

Query: 45  MDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNN 104
           +D A  +F+ M      P+ + +S L+  + R +        +  L+++M +   +  N 
Sbjct: 35  IDDALSLFNRMLRMRPPPSIVDFSKLLTSITRMKHYST----VLSLYKQM-DSFGIPHNT 89

Query: 105 AAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYV 164
                L++S C    +   F +  D+ +            +I  LC  G+   A ++   
Sbjct: 90  YTLNILINSFCHLNRLGFAFSVLGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDK 149

Query: 165 MRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESD 224
           M   G  P +++Y ++++GLCK G    A + L    Q    P+   Y  +++ LC +  
Sbjct: 150 MTGEGFQPDVLTYGTLINGLCKVGNTSTAIRFLRSMEQRNCRPTVVVYSTIIDSLCKDRQ 209

Query: 225 LEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNT 284
           L +A  +   ML+K         +  +  LC++ +  E + +   M+  +  PD +T NT
Sbjct: 210 LTEALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNT 269

Query: 285 VINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ 344
           +++  CK G + +A  V++ M+      PD VT+ +++ G      + + +N+ +  M +
Sbjct: 270 LVDALCKEGMVVKAHYVVDVMIQSDL-KPDVVTYNSLMDGHCLRSEMGKTVNV-FDTMVR 327

Query: 345 RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 404
           +G  P +++Y  ++ G  +++ +++A  +F  M   G++ D+ TY  +I GLC   +L +
Sbjct: 328 KGCVPSVISYTTLINGYCKIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRD 387

Query: 405 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
           A   + ++V    I D   Y  +   LC++ ++ EA+  L  +  + + P+I  Y++V+D
Sbjct: 388 AIALFHEMVVYGQIPDLVTYRILFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIVMD 447

Query: 465 GACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           G C+      A  +  ++   GL+PD  T+ I+
Sbjct: 448 GMCRAGELEAARDLFSKLSSKGLHPDVRTYTIM 480



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 112/407 (27%), Positives = 187/407 (45%), Gaps = 8/407 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC +     A +    M+ R   P VV Y+T+I   C+  ++  A  +F +M   G+
Sbjct: 166 INGLCKVGNTSTAIRFLRSMEQRNCRPTVVVYSTIIDSLCKDRQLTEALSLFSDMLAKGI 225

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN+ TYS L+ G+      + A  L + +  R    + L+ N      LVD+LC+EG V
Sbjct: 226 SPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNT-----LVDALCKEGMV 280

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +   + + M Q     +      ++D  C          V   M ++G  PS++SY ++
Sbjct: 281 VKAHYVVDVMIQSDLKPDVVTYNSLMDGHCLRSEMGKTVNVFDTMVRKGCVPSVISYTTL 340

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++G CK     +A  L EE  Q G +P   TY  L+ GLC    L  A  +   M+    
Sbjct: 341 INGYCKIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQ 400

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           +       I    LC      E + +L  +  T   PD+   + V++G C+ G +E A  
Sbjct: 401 IPDLVTYRILFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAGELEAARD 460

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           + + + + K   PD  T+T +I GL   G + EA + L+  M + G SP   TYN + RG
Sbjct: 461 LFSKL-SSKGLHPDVRTYTIMINGLCQQGLLAEA-SKLFGEMDENGCSPNACTYNLITRG 518

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKR 407
             R      A ++F  ML  G   D +T  ++++ L + + LD++ +
Sbjct: 519 FLRNNETLRAIQLFQEMLSRGFSIDVSTTTLLVEMLSD-DGLDQSVK 564


>gi|302785473|ref|XP_002974508.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
 gi|300158106|gb|EFJ24730.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
          Length = 567

 Score =  220 bits (560), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 149/520 (28%), Positives = 252/520 (48%), Gaps = 57/520 (10%)

Query: 24  GHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERA 83
           G+  NV +Y  L+    R    D A  VF EM      P++ T+++L+RG+ R+  +E+A
Sbjct: 2   GYEHNVFTYNKLLLQLTREHRHDKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEKA 61

Query: 84  NVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACG 143
                KL  RMKE   +  ++A +  L+    +     + F+   +M +   +       
Sbjct: 62  R----KLLGRMKEMGCVP-DDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYT 116

Query: 144 HMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQF 203
           +++D LC++ R   A +++  MR +G +P++ +YN IV GLC+      A ++LEE    
Sbjct: 117 NIVDGLCKAERTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVR 176

Query: 204 GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD-VDRTRICNIYLRALCLIKNPTE 262
           GY P   TY   ++GLC    +++ARK L  M    D V  T + N     LC   +   
Sbjct: 177 GYFPDVVTYNSFIKGLCKCDRVDEARKFLARMPVTPDVVSYTTVIN----GLCKSGDLDS 232

Query: 263 LLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTII 322
              +L  M    C PDV+T +++I+GFCK G +E A+ +L+ M+    C P+ V + +++
Sbjct: 233 ASRMLDHMSNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLG-CRPNMVAYNSLL 291

Query: 323 FGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGV 382
             L  +G I +A ++L + M +RG++P +V+YNA + GL +  RV++AK VF+ M+  G 
Sbjct: 292 GALHRLGHIGKAEDMLVE-MERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGC 350

Query: 383 VADSTTYAIVI----------DGLCESNQLDEA-----KRFWDDIVWPS----------- 416
             ++++Y+++I          DGLC+  + DEA     K   + I  P            
Sbjct: 351 TPNASSYSMLIVDILLYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSH 410

Query: 417 ----------NIHDNYV---------YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIV 457
                      IH   +         +  ++ GLC   ++ +A   L  +VD G  P+ V
Sbjct: 411 CKRRQIDKALQIHKQMLEKNCCNVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFV 470

Query: 458 CYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            Y  ++D  CK      A ++  E  K G  PD VT+  L
Sbjct: 471 TYGTLVDAMCKCGKSAAALELFEEAVKGGCVPDVVTYSAL 510



 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 142/509 (27%), Positives = 242/509 (47%), Gaps = 26/509 (5%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC  +++ +A KL   MK  G VP+   Y  LI GY +  +   A+K   EM     LP 
Sbjct: 52  LCRSNQLEKARKLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPT 111

Query: 64  SLTYSVLVRGVL---RTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            +TY+ +V G+    RTRD         KL + M+++   S N   +  +V+ LC E  +
Sbjct: 112 VVTYTNIVDGLCKAERTRDA-------VKLLDEMRDK-GCSPNIYTYNVIVEGLCEERKL 163

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E  ++ E+M       +       I  LC+  R   A + +  M    +TP +VSY ++
Sbjct: 164 DEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARM---PVTPDVVSYTTV 220

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++GLCK G    A ++L+     G  P   TY  L++G C   ++E+A  +L  ML    
Sbjct: 221 INGLCKSGDLDSASRMLDHMSNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGC 280

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                  N  L AL  + +  +  ++LV M +    PDV++ N  I+G CK  R+++A  
Sbjct: 281 RPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKA 340

Query: 301 VLNDMVAGKFCAPDAVTFTTIIF----------GLLNVGRIQEALNLLYQVMPQRGYSPG 350
           V + MV  + C P+A +++ +I           GL   GR  EA  L  +V+ ++   P 
Sbjct: 341 VFDRMVE-RGCTPNASSYSMLIVDILLYTVLLDGLCKGGRFDEACALFSKVLDEKICEPD 399

Query: 351 IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD 410
           +  YN +L    + R++++A ++   ML      +  T+ I++ GLC  ++L +A+    
Sbjct: 400 VFFYNVMLDSHCKRRQIDKALQIHKQMLEKNC-CNVVTWNILVHGLCVDDRLSDAETMLL 458

Query: 411 DIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLS 470
            +V    I D   Y  ++  +C+ GK   A+    E V  G  P++V Y+ +I G    +
Sbjct: 459 TMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVKGGCVPDVVTYSALITGLVHEN 518

Query: 471 MKREAYQILREMRKNGLNPDAVTWRILDK 499
           M  EAY +  ++ +    PD  T  +L +
Sbjct: 519 MAEEAYLLFTKLVERRWVPDDKTLGLLHR 547



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 110/455 (24%), Positives = 210/455 (46%), Gaps = 35/455 (7%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   R  +A KL  +M+ +G  PN+ +Y  ++ G C   ++D A K+ +EM   G 
Sbjct: 119 VDGLCKAERTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGY 178

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TY+  ++G+ +   V+ A     K   RM    D+     ++  +++ LC+ G +
Sbjct: 179 FPDVVTYNSFIKGLCKCDRVDEAR----KFLARMPVTPDV----VSYTTVINGLCKSGDL 230

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +   R+ + M       +      +ID  C+ G    A  ++  M K G  P++V+YNS+
Sbjct: 231 DSASRMLDHMSNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSL 290

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +  L + G   +A  +L E  + G+ P   +Y   ++GLC    ++KA+ V   M+    
Sbjct: 291 LGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVE--- 347

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
               R C           N +    ++V         D++    +++G CK GR +EA  
Sbjct: 348 ----RGCT---------PNASSYSMLIV---------DILLYTVLLDGLCKGGRFDEACA 385

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           + + ++  K C PD   +  ++       +I +AL +  Q++ +      +VT+N ++ G
Sbjct: 386 LFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLEKN--CCNVVTWNILVHG 443

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L    R+ +A+ +   M+  G + D  TY  ++D +C+  +   A   +++ V    + D
Sbjct: 444 LCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVKGGCVPD 503

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN 455
              Y+A+I GL       EA     +LV+    P+
Sbjct: 504 VVTYSALITGLVHENMAEEAYLLFTKLVERRWVPD 538



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 122/443 (27%), Positives = 203/443 (45%), Gaps = 48/443 (10%)

Query: 103 NNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVV 162
           N   +  L+  L RE   ++   + ++M       + F    ++  LCRS +   A +++
Sbjct: 6   NVFTYNKLLLQLTREHRHDKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEKARKLL 65

Query: 163 YVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGE 222
             M++ G  P    YN+++ G  K     +A++ L E ++   LP+  TY  +V+GLC  
Sbjct: 66  GRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKA 125

Query: 223 SDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITL 282
                A K+L  M  K         N+ +  LC  +   E   +L  M      PDV+T 
Sbjct: 126 ERTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTY 185

Query: 283 NTVINGFCKMGRIEEALKVLN-------------------------------DMVAGKFC 311
           N+ I G CK  R++EA K L                                D ++ + C
Sbjct: 186 NSFIKGLCKCDRVDEARKFLARMPVTPDVVSYTTVINGLCKSGDLDSASRMLDHMSNRGC 245

Query: 312 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK 371
            PD VT++++I G    G ++ A+ LL   M + G  P +V YN++L  L RL  + +A+
Sbjct: 246 TPDVVTYSSLIDGFCKGGEVERAMGLL-DSMLKLGCRPNMVAYNSLLGALHRLGHIGKAE 304

Query: 372 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV----------WPSNIHDN 421
           ++   M   G   D  +Y   IDGLC++ ++ +AK  +D +V          +   I D 
Sbjct: 305 DMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLIVDI 364

Query: 422 YVYAAMIKGLCRSGKIHEAVHFLYELVDSGV-TPNIVCYNVVIDGACKLSMKREAYQILR 480
            +Y  ++ GLC+ G+  EA     +++D  +  P++  YNV++D  CK     +A QI +
Sbjct: 365 LLYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHK 424

Query: 481 EM-RKNGLNPDAVTWRILDKLHG 502
           +M  KN  N   VTW IL  +HG
Sbjct: 425 QMLEKNCCN--VVTWNIL--VHG 443



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 120/264 (45%), Gaps = 15/264 (5%)

Query: 7   LSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS-- 64
           L  +G+A  +  +M+ RG  P+VVSY   I G C+   +  A  VFD M   G  PN+  
Sbjct: 297 LGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASS 356

Query: 65  --------LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCR 116
                   L Y+VL+ G+ +    + A  L  K+ +    E D+   N     ++DS C+
Sbjct: 357 YSMLIVDILLYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNV----MLDSHCK 412

Query: 117 EGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVS 176
              +++  +I + M +    N       ++  LC   R   A  ++  M   G  P  V+
Sbjct: 413 RRQIDKALQIHKQMLEKNCCNV-VTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVT 471

Query: 177 YNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFML 236
           Y ++V  +CK G    A +L EE ++ G +P   TY  L+ GL  E+  E+A  +   ++
Sbjct: 472 YGTLVDAMCKCGKSAAALELFEEAVKGGCVPDVVTYSALITGLVHENMAEEAYLLFTKLV 531

Query: 237 SKKDVDRTRICNIYLRALCLIKNP 260
            ++ V   +   +  R L L+  P
Sbjct: 532 ERRWVPDDKTLGLLHRKLKLLNKP 555


>gi|449438681|ref|XP_004137116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 142/513 (27%), Positives = 256/513 (49%), Gaps = 22/513 (4%)

Query: 13  AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVR 72
           A  +F +M   G  PNV +Y  LI G+C  G +++    F EM   G LPN +TY+ ++ 
Sbjct: 187 AEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLFFFGEMERNGCLPNVVTYNTIID 246

Query: 73  GVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQ 132
              + R +  A    FKL  R+   + L+ N  ++  +++ LCREG + E   I E+M +
Sbjct: 247 AYCKLRKIGEA----FKLL-RLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSK 301

Query: 133 GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMR 192
            + V +      +I+  C  G  H A  +   M K GL+P++V+Y ++++ +CK G   R
Sbjct: 302 RRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNR 361

Query: 193 AYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLR 252
           A + L++    G  P+  TY  L++G   +  L++A ++++ M+           N  + 
Sbjct: 362 AMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALIN 421

Query: 253 ALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCA 312
             C++    +   +L  M++    PDV++ +T+I+GFC+   +E+A ++  +MVA K  +
Sbjct: 422 GHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVA-KGIS 480

Query: 313 PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKE 372
           PD  T++++I GL    R+ E  + L+Q M   G  P  VTY +++        +++A  
Sbjct: 481 PDVATYSSLIQGLCKQRRLGEVCD-LFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALR 539

Query: 373 VFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY-------- 424
           + + M+  G   D  TY ++I+G  + ++  EAKR    +++  ++ +   Y        
Sbjct: 540 LHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDNCN 599

Query: 425 -------AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQ 477
                   A++KG C  G ++EA   L  ++  G   N   YNV+I G  K+    +AY 
Sbjct: 600 NLEFKSALALMKGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYN 659

Query: 478 ILREMRKNGLNPDAVTWRILDKLHGNRGNDFGL 510
           + +EM  +G  P +VT   L K   + G +  L
Sbjct: 660 LYKEMLHSGFAPHSVTIMALAKSLYHEGKEVEL 692



 Score =  202 bits (515), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 137/503 (27%), Positives = 237/503 (47%), Gaps = 25/503 (4%)

Query: 21  KSRGHVPNVVSYTTLIHGYCRTGE-MDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           KS G +P V+SY  ++    RT + + +A  +F EM   GV PN  TY++L+RG     +
Sbjct: 159 KSYGFMPGVLSYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGN 218

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
           +E   +  F   ER         N   +  ++D+ C+   + E F++   M   K +N  
Sbjct: 219 LEMG-LFFFGEMER----NGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMAL-KGLNPN 272

Query: 140 FACGH-MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLE 198
               + +I+ LCR G+    S ++  M KR   P  V++N++++G C  G   +A  L  
Sbjct: 273 LISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHA 332

Query: 199 EGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIK 258
           E ++ G  P+  TY  L+  +C   +L +A + L  M  +      R     +       
Sbjct: 333 EMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQG 392

Query: 259 NPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTF 318
              +   ++  M++    P +IT N +ING C +GR+E+A  +L +M+   F  PD V++
Sbjct: 393 FLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFI-PDVVSY 451

Query: 319 TTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCML 378
           +TII G      +++A  L  + M  +G SP + TY+++++GL + RR+ E  ++F  ML
Sbjct: 452 STIISGFCRNQELEKAFQLKVE-MVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEML 510

Query: 379 GIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIH 438
            +G+  D  TY  +I+  C    LD+A R  D+++      D   Y  +I G  +  +  
Sbjct: 511 SLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTK 570

Query: 439 EAVHFLYELVDSGVTPNIVCYNVVID---------------GACKLSMKREAYQILREMR 483
           EA   L +L+     PN + YN +ID               G C   +  EA ++L  M 
Sbjct: 571 EAKRLLLKLLYEESVPNEITYNTLIDNCNNLEFKSALALMKGFCMKGLMNEADRVLESML 630

Query: 484 KNGLNPDAVTWRILDKLHGNRGN 506
           + G   +   + ++   H   GN
Sbjct: 631 QKGYKLNEEVYNVIIHGHSKVGN 653



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 128/512 (25%), Positives = 240/512 (46%), Gaps = 39/512 (7%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C L ++GEA KL   M  +G  PN++SY  +I+G CR G+M    ++ +EM     
Sbjct: 245 IDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRY 304

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P+ +T++ L+ G     +  +A VL  ++ +       LS N   +  L++S+C+ G +
Sbjct: 305 VPDRVTFNTLINGYCNVGNFHQALVLHAEMVKN-----GLSPNVVTYTTLINSMCKAGNL 359

Query: 121 NEVFRIAEDM------PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSL 174
           N      + M      P G++         +ID   + G    A +++  M + G TP++
Sbjct: 360 NRAMEFLDQMRDRGLHPNGRTYTT------LIDGFSQQGFLKQAYQIMKEMVENGFTPTI 413

Query: 175 VSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQF 234
           ++YN++++G C  G    A  LL+E I+ G++P   +Y  ++ G C   +LEKA ++   
Sbjct: 414 ITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVE 473

Query: 235 MLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGR 294
           M++K         +  ++ LC  +   E+ ++   ML     PD +T  ++IN +C  G 
Sbjct: 474 MVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGD 533

Query: 295 IEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTY 354
           +++AL++ ++M+   F +PD VT+  +I G     R +EA  LL +++ +    P  +TY
Sbjct: 534 LDKALRLHDEMIQKGF-SPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESV-PNEITY 591

Query: 355 NAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVW 414
           N ++     L         F   L +            + G C    ++EA R  + ++ 
Sbjct: 592 NTLIDNCNNLE--------FKSALAL------------MKGFCMKGLMNEADRVLESMLQ 631

Query: 415 PSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKRE 474
                +  VY  +I G  + G I +A +   E++ SG  P+ V    +         + E
Sbjct: 632 KGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSGFAPHSVTIMALAKSLYHEGKEVE 691

Query: 475 AYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
             Q+L    K+    +A   ++L  ++   GN
Sbjct: 692 LNQLLDYTLKSCRITEAALAKVLIGINSKEGN 723



 Score =  181 bits (459), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 123/485 (25%), Positives = 239/485 (49%), Gaps = 19/485 (3%)

Query: 17  FFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLR 76
           ++  KS   V ++V     +    R   ++ A  + +  +  G +P  L+Y+ ++  V+R
Sbjct: 125 YYQCKSSSAVFDLV-----VKSCARVNLINKALSIVNLAKSYGFMPGVLSYNAILDAVIR 179

Query: 77  TRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSV 136
           T+   +    +FK       E  +S N   +  L+   C  G +        +M +   +
Sbjct: 180 TKQSVKIAEGIFKEM----VESGVSPNVYTYNILIRGFCTAGNLEMGLFFFGEMERNGCL 235

Query: 137 NEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQL 196
                   +ID+ C+  +   A +++ +M  +GL P+L+SYN +++GLC+ G      ++
Sbjct: 236 PNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEI 295

Query: 197 LEEGIQFGYLPSEHTYKVLVEGLCGESDLEKA----RKVLQFMLSKKDVDRTRICNIYLR 252
           LEE  +  Y+P   T+  L+ G C   +  +A     ++++  LS   V  T + N    
Sbjct: 296 LEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLIN---- 351

Query: 253 ALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCA 312
           ++C   N    +  L  M      P+  T  T+I+GF + G +++A +++ +MV   F  
Sbjct: 352 SMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGF-T 410

Query: 313 PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKE 372
           P  +T+  +I G   +GR+++A  LL Q M +RG+ P +V+Y+ ++ G  R + +E+A +
Sbjct: 411 PTIITYNALINGHCILGRMEDASGLL-QEMIERGFIPDVVSYSTIISGFCRNQELEKAFQ 469

Query: 373 VFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLC 432
           +   M+  G+  D  TY+ +I GLC+  +L E    + +++      D   Y ++I   C
Sbjct: 470 LKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYC 529

Query: 433 RSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAV 492
             G + +A+    E++  G +P+IV YNV+I+G  K S  +EA ++L ++      P+ +
Sbjct: 530 IEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEI 589

Query: 493 TWRIL 497
           T+  L
Sbjct: 590 TYNTL 594



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/318 (25%), Positives = 149/318 (46%), Gaps = 22/318 (6%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C L R+ +A  L  +M  RG +P+VVSY+T+I G+CR  E++ A+++  EM   G+ P+ 
Sbjct: 424 CILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDV 483

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
            TYS L++G+ + R +      +  L++ M     L  +   + +L+++ C EG +++  
Sbjct: 484 ATYSSLIQGLCKQRRLGE----VCDLFQEML-SLGLPPDEVTYTSLINAYCIEGDLDKAL 538

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV--- 181
           R+ ++M Q     +      +I+   +  R   A R++  +      P+ ++YN+++   
Sbjct: 539 RLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDNC 598

Query: 182 ------------HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKAR 229
                        G C  G    A ++LE  +Q GY  +E  Y V++ G     ++EKA 
Sbjct: 599 NNLEFKSALALMKGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAY 658

Query: 230 KVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGF 289
            + + ML       +       ++L       EL  +L + L++ C+     L  V+ G 
Sbjct: 659 NLYKEMLHSGFAPHSVTIMALAKSLYHEGKEVELNQLLDYTLKS-CRITEAALAKVLIGI 717

Query: 290 -CKMGRIEEALKVLNDMV 306
             K G ++    VL DM 
Sbjct: 718 NSKEGNMDAVFNVLKDMA 735



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 101/197 (51%), Gaps = 2/197 (1%)

Query: 311 CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR-VEE 369
           C   +  F  ++     V  I +AL+++  +    G+ PG+++YNA+L  + R ++ V+ 
Sbjct: 128 CKSSSAVFDLVVKSCARVNLINKALSIV-NLAKSYGFMPGVLSYNAILDAVIRTKQSVKI 186

Query: 370 AKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIK 429
           A+ +F  M+  GV  +  TY I+I G C +  L+    F+ ++     + +   Y  +I 
Sbjct: 187 AEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLFFFGEMERNGCLPNVVTYNTIID 246

Query: 430 GLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNP 489
             C+  KI EA   L  +   G+ PN++ YNVVI+G C+    +E  +IL EM K    P
Sbjct: 247 AYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVP 306

Query: 490 DAVTWRILDKLHGNRGN 506
           D VT+  L   + N GN
Sbjct: 307 DRVTFNTLINGYCNVGN 323


>gi|296083865|emb|CBI24253.3| unnamed protein product [Vitis vinifera]
          Length = 582

 Score =  219 bits (559), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 144/497 (28%), Positives = 249/497 (50%), Gaps = 46/497 (9%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC    V EA  L  +M  +   P++VSY TLI+G C+  ++  A  +  EM   G  PN
Sbjct: 8   LCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPN 67

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           S+T + L+ G+ +   ++ A     +L E MK ++    +   +  L+   C  G ++  
Sbjct: 68  SVTCTTLMDGLCKDGRMDEA----MELLEAMK-KKGFDADVVLYGTLISGFCNNGNLDRG 122

Query: 124 FRIAEDM-PQGKSVN-EEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
             + ++M  +G S N   ++C  ++  LCR G+   A+ V+  M + G+ P +V+Y  ++
Sbjct: 123 KELFDEMLGKGISANVVTYSC--LVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLI 180

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
            GLCK G    A  LL   ++ G  PS  TY VL+ GLC E  +  A K+L+ M+ K   
Sbjct: 181 DGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGK- 239

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
                                             + DV+T NT++ G C  G+++EALK+
Sbjct: 240 ----------------------------------KADVVTYNTLMKGLCDKGKVDEALKL 265

Query: 302 LNDMVAGKFC-APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
            N M   + C  P+  TF  +I GL   GR+ +A+  +++ M ++G    +VTYN +L G
Sbjct: 266 FNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVK-IHRKMVKKGSCGNLVTYNMLLGG 324

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
             +  +++EA E++  +L +G V +S TY+I+IDG C+   L+ AK  + ++        
Sbjct: 325 CLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPA 384

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
            + Y  ++  LC+ G + +A     E+ ++   P+I+ +N +IDG  K    +   ++  
Sbjct: 385 LFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQM 444

Query: 481 EMRKNGLNPDAVTWRIL 497
           +M + GL PDA+T+  L
Sbjct: 445 KMVEMGLRPDALTFSTL 461



 Score =  187 bits (476), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 136/506 (26%), Positives = 231/506 (45%), Gaps = 75/506 (14%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           MD LC   R+ EA +L   MK +G   +VV Y TLI G+C  G +D   ++FDEM   G+
Sbjct: 75  MDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGI 134

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             N +TYS LV G+ R    + AN ++  + E       +  +   +  L+D LC++   
Sbjct: 135 SANVVTYSCLVHGLCRLGQWKEANTVLNAMAEH-----GIHPDVVTYTGLIDGLCKD--- 186

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                                           GR   A  ++ +M ++G  PS V+YN +
Sbjct: 187 --------------------------------GRATHAMDLLNLMVEKGEEPSNVTYNVL 214

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GLCK G  + A+++L   I+ G      TY  L++GLC +  +++A K+   M   ++
Sbjct: 215 LSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNEN 274

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                         CL                   +P+V T N +I G CK GR+ +A+K
Sbjct: 275 --------------CL-------------------EPNVFTFNMLIGGLCKEGRLTKAVK 301

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +   MV    C  + VT+  ++ G L  G+I+EA+ L  QV+   G+ P   TY+ ++ G
Sbjct: 302 IHRKMVKKGSCG-NLVTYNMLLGGCLKAGKIKEAMELWKQVL-DLGFVPNSFTYSILIDG 359

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
             ++R +  AK +F  M   G+      Y  ++  LC+   L++AK  + ++   +   D
Sbjct: 360 FCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPD 419

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              +  MI G  ++G          ++V+ G+ P+ + ++ +I+   KL    EA   L 
Sbjct: 420 IISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFSTLINRLSKLGELDEAKSALE 479

Query: 481 EMRKNGLNPDAVTWRILDKLHGNRGN 506
            M  +G  PDA+ +  L K   ++G+
Sbjct: 480 RMVASGFTPDALVYDSLLKGLSSKGD 505



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 87/258 (33%), Positives = 143/258 (55%), Gaps = 2/258 (0%)

Query: 248 NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA 307
           NI L+ LC      E + ++  M +    PD+++ NT+ING CK  +++EA+ +L +M A
Sbjct: 2   NIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEA 61

Query: 308 GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRV 367
              C P++VT TT++ GL   GR+ EA+ LL + M ++G+   +V Y  ++ G      +
Sbjct: 62  AG-CFPNSVTCTTLMDGLCKDGRMDEAMELL-EAMKKKGFDADVVLYGTLISGFCNNGNL 119

Query: 368 EEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAM 427
           +  KE+F+ MLG G+ A+  TY+ ++ GLC   Q  EA    + +       D   Y  +
Sbjct: 120 DRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGL 179

Query: 428 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
           I GLC+ G+   A+  L  +V+ G  P+ V YNV++ G CK  +  +A++ILR M + G 
Sbjct: 180 IDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGK 239

Query: 488 NPDAVTWRILDKLHGNRG 505
             D VT+  L K   ++G
Sbjct: 240 KADVVTYNTLMKGLCDKG 257



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 90/322 (27%), Positives = 162/322 (50%), Gaps = 4/322 (1%)

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
           N ++ GLC++GG   A  L+ E  +    P   +Y  L+ GLC    L++A  +L  M +
Sbjct: 2   NIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEA 61

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
                 +  C   +  LC      E + +L  M +     DV+   T+I+GFC  G ++ 
Sbjct: 62  AGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDR 121

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
             ++ ++M+ GK  + + VT++ ++ GL  +G+ +EA N +   M + G  P +VTY  +
Sbjct: 122 GKELFDEML-GKGISANVVTYSCLVHGLCRLGQWKEA-NTVLNAMAEHGIHPDVVTYTGL 179

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 417
           + GL +  R   A ++ N M+  G    + TY +++ GLC+   + +A +    ++    
Sbjct: 180 IDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGK 239

Query: 418 IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG--VTPNIVCYNVVIDGACKLSMKREA 475
             D   Y  ++KGLC  GK+ EA+     + D+   + PN+  +N++I G CK     +A
Sbjct: 240 KADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKA 299

Query: 476 YQILREMRKNGLNPDAVTWRIL 497
            +I R+M K G   + VT+ +L
Sbjct: 300 VKIHRKMVKKGSCGNLVTYNML 321



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 69/216 (31%), Positives = 113/216 (52%), Gaps = 2/216 (0%)

Query: 282 LNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQV 341
           +N V+ G C+ G + EA+ ++ +M   K  +PD V++ T+I GL    +++EA+ LL + 
Sbjct: 1   MNIVLKGLCRNGGVFEAMGLIREM-GRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLE- 58

Query: 342 MPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ 401
           M   G  P  VT   ++ GL +  R++EA E+   M   G  AD   Y  +I G C +  
Sbjct: 59  MEAAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGN 118

Query: 402 LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNV 461
           LD  K  +D+++      +   Y+ ++ GLCR G+  EA   L  + + G+ P++V Y  
Sbjct: 119 LDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTG 178

Query: 462 VIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           +IDG CK      A  +L  M + G  P  VT+ +L
Sbjct: 179 LIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVL 214



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 69/285 (24%), Positives = 131/285 (45%), Gaps = 9/285 (3%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R+ +A K+   M  +G   N+V+Y  L+ G  + G++  A +++ ++   G +PN
Sbjct: 290 LCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPN 349

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAF--ANLVDSLCREGYVN 121
           S TYS+L+ G  + R +  A  L  ++           +N A F    L+ SLC+EG + 
Sbjct: 350 SFTYSILIDGFCKMRMLNIAKGLFCEMRTH-------GLNPALFDYNTLMASLCKEGSLE 402

Query: 122 EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
           +   + ++M       +  +   MID   ++G       +   M + GL P  +++++++
Sbjct: 403 QAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFSTLI 462

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
           + L K G    A   LE  +  G+ P    Y  L++GL  + D  +   +L  M +K  V
Sbjct: 463 NRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSKGDTTEIINLLHQMAAKGTV 522

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVI 286
              +I +  L  LC      +++ +L    Q   +   I+ N ++
Sbjct: 523 LDRKIVSTILTCLCHSIQEVDVMELLPTFFQGTSEGASISCNELL 567



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 132/294 (44%), Gaps = 11/294 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHV--PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHC 58
           M  LC   +V EA KLF  M    +   PNV ++  LI G C+ G +  A K+  +M   
Sbjct: 250 MKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKK 309

Query: 59  GVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSV--NNAAFANLVDSLCR 116
           G   N +TY++L+ G L+   ++ A     +LW   K+  DL    N+  ++ L+D  C+
Sbjct: 310 GSCGNLVTYNMLLGGCLKAGKIKEA----MELW---KQVLDLGFVPNSFTYSILIDGFCK 362

Query: 117 EGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVS 176
              +N    +  +M         F    ++ SLC+ G    A  +   M      P ++S
Sbjct: 363 MRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIIS 422

Query: 177 YNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFML 236
           +N+++ G  K G      +L  + ++ G  P   T+  L+  L    +L++A+  L+ M+
Sbjct: 423 FNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFSTLINRLSKLGELDEAKSALERMV 482

Query: 237 SKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFC 290
           +        + +  L+ L    + TE++N+L  M       D   ++T++   C
Sbjct: 483 ASGFTPDALVYDSLLKGLSSKGDTTEIINLLHQMAAKGTVLDRKIVSTILTCLC 536



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 58/116 (50%)

Query: 391 IVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 450
           IV+ GLC +  + EA     ++   S   D   Y  +I GLC++ K+ EAV  L E+  +
Sbjct: 3   IVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAA 62

Query: 451 GVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           G  PN V    ++DG CK     EA ++L  M+K G + D V +  L     N GN
Sbjct: 63  GCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGN 118


>gi|302821481|ref|XP_002992403.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
 gi|300139819|gb|EFJ06553.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
          Length = 448

 Score =  219 bits (559), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 130/454 (28%), Positives = 236/454 (51%), Gaps = 10/454 (2%)

Query: 35  LIHGYCRTGEMDVAYKVFDEMRHCGVL-PNSLTYSVLVRGVLRTRDVERANVLMFKLWER 93
           L+  + R  +   AY +F     CG+  P+S+TYS L+ G  + RD ++A    ++L + 
Sbjct: 4   LLSAFVRKKKAQEAYDLFKN-HLCGLCSPDSITYSTLINGFCKARDFQQA----YRLLDE 58

Query: 94  MKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSG 153
           M E+  +  +NA +  ++  LC  G V+       DM Q            ++D+LC+S 
Sbjct: 59  M-EKRGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDM-QRHCAPSVITYTILVDALCKSA 116

Query: 154 RNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYK 213
           R   AS ++  M + G  P++V+YN++++G CK G    A  L  + ++    P   TY 
Sbjct: 117 RISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYN 176

Query: 214 VLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQT 273
           +L++G C +   +   K+LQ M+           N  + +L       +  N+   ML+ 
Sbjct: 177 ILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRR 236

Query: 274 QCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQE 333
            C+P   T N +I+ FCK+G+++ A ++   ++  + C PD  T+  +I G     RI +
Sbjct: 237 DCKPSHFTFNLMIDMFCKVGQLDLAYELFQ-LMTDRGCLPDIYTYNIMISGACRANRIDD 295

Query: 334 ALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVI 393
           A  LL + M + G  P +VTYN+++ GL +  +V+EA EV+  +   G   D  T + +I
Sbjct: 296 ARQLL-ERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLI 354

Query: 394 DGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVT 453
           DGLC+S +LD+A++   ++    +  D   Y  +I G C++ ++ +++ F  E++D G  
Sbjct: 355 DGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCV 414

Query: 454 PNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
           P ++ Y++VID  CK +  R+   +L+ M + G+
Sbjct: 415 PTVITYSIVIDKLCKSARVRDGCMLLKTMLERGV 448



 Score =  184 bits (467), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 114/394 (28%), Positives = 201/394 (51%), Gaps = 7/394 (1%)

Query: 110 LVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRG 169
           L+ +  R+    E + + ++   G    +      +I+  C++     A R++  M KRG
Sbjct: 4   LLSAFVRKKKAQEAYDLFKNHLCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEKRG 63

Query: 170 LTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKAR 229
           + P    YN+I+ GLC +G    A     + +Q    PS  TY +LV+ LC  + +  A 
Sbjct: 64  IVPHNAVYNTIIKGLCDNGRVDSALVHYRD-MQRHCAPSVITYTILVDALCKSARISDAS 122

Query: 230 KVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGF 289
            +L+ M+           N  +   C + N  E + +   ML+  C PDV T N +I+G+
Sbjct: 123 LILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGY 182

Query: 290 CKMGRIEEALKVLNDMVAGKF-CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYS 348
           CK  R ++  K+L +MV  K+ C P+ +T+ T++  L+  G+  +A NL  Q+M +R   
Sbjct: 183 CKQERPQDGAKLLQEMV--KYGCEPNFITYNTLMDSLVKSGKYIDAFNLA-QMMLRRDCK 239

Query: 349 PGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRF 408
           P   T+N ++    ++ +++ A E+F  M   G + D  TY I+I G C +N++D+A++ 
Sbjct: 240 PSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQL 299

Query: 409 WDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACK 468
            + +       D   Y +++ GLC++ ++ EA      L + G   ++V  + +IDG CK
Sbjct: 300 LERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCK 359

Query: 469 LSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
                +A ++LREM +NG  PD V + IL  +HG
Sbjct: 360 SRRLDDAEKLLREMERNGSAPDVVAYTIL--IHG 391



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 113/401 (28%), Positives = 197/401 (49%), Gaps = 4/401 (0%)

Query: 101 SVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASR 160
           S ++  ++ L++  C+     + +R+ ++M +   V        +I  LC +GR   A  
Sbjct: 30  SPDSITYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSA-L 88

Query: 161 VVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLC 220
           V Y   +R   PS+++Y  +V  LCK      A  +LE+ I+ G  P+  TY  L+ G C
Sbjct: 89  VHYRDMQRHCAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFC 148

Query: 221 GESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVI 280
              ++++A  +   ML           NI +   C  + P +   +L  M++  C+P+ I
Sbjct: 149 KLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFI 208

Query: 281 TLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQ 340
           T NT+++   K G+  +A   L  M+  + C P   TF  +I     VG++  A  L +Q
Sbjct: 209 TYNTLMDSLVKSGKYIDAFN-LAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYEL-FQ 266

Query: 341 VMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN 400
           +M  RG  P I TYN ++ G  R  R+++A+++   M   G   D  TY  ++ GLC+++
Sbjct: 267 LMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKAS 326

Query: 401 QLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYN 460
           Q+DEA   ++ +       D    + +I GLC+S ++ +A   L E+  +G  P++V Y 
Sbjct: 327 QVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYT 386

Query: 461 VVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRI-LDKL 500
           ++I G CK     ++     EM   G  P  +T+ I +DKL
Sbjct: 387 ILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKL 427



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 98/346 (28%), Positives = 172/346 (49%), Gaps = 7/346 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC  +R+ +A  +  DM   G  PNVV+Y TLI+G+C+ G MD A  +F++M     
Sbjct: 109 VDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSC 168

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+  TY++L+ G  +    +    L+ ++ +   E   ++ N      L+DSL + G  
Sbjct: 169 SPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYN-----TLMDSLVKSGKY 223

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            + F +A+ M +       F    MID  C+ G+   A  +  +M  RG  P + +YN +
Sbjct: 224 IDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIM 283

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G C+      A QLLE   + G  P   TY  +V GLC  S +++A +V + + +   
Sbjct: 284 ISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGY 343

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                 C+  +  LC  +   +   +L  M +    PDV+    +I+GFCK  +++++L 
Sbjct: 344 FLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLA 403

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
             ++M+  K C P  +T++ +I  L    R+++   LL + M +RG
Sbjct: 404 FFSEML-DKGCVPTVITYSIVIDKLCKSARVRDGCMLL-KTMLERG 447



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 99/354 (27%), Positives = 157/354 (44%), Gaps = 36/354 (10%)

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
           N ++    +      AY L +  +     P   TY  L+ G C   D ++A ++L  M  
Sbjct: 2   NCLLSAFVRKKKAQEAYDLFKNHLCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEK 61

Query: 238 KKDV---------------------------DRTRIC-------NIYLRALCLIKNPTEL 263
           +  V                           D  R C        I + ALC     ++ 
Sbjct: 62  RGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQRHCAPSVITYTILVDALCKSARISDA 121

Query: 264 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF 323
             +L  M++  C P+V+T NT+INGFCK+G ++EA+ + N M+    C+PD  T+  +I 
Sbjct: 122 SLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENS-CSPDVFTYNILID 180

Query: 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 383
           G     R Q+   LL Q M + G  P  +TYN ++  L +  +  +A  +   ML     
Sbjct: 181 GYCKQERPQDGAKLL-QEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCK 239

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
               T+ ++ID  C+  QLD A   +  +     + D Y Y  MI G CR+ +I +A   
Sbjct: 240 PSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQL 299

Query: 444 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           L  + ++G  P++V YN ++ G CK S   EAY++   +R  G   D VT   L
Sbjct: 300 LERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTL 353



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 72/251 (28%), Positives = 124/251 (49%), Gaps = 3/251 (1%)

Query: 247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV 306
           CN  L A    K   E  ++    L   C PD IT +T+INGFCK    ++A ++L++M 
Sbjct: 1   CNCLLSAFVRKKKAQEAYDLFKNHLCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEM- 59

Query: 307 AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 366
             +   P    + TII GL + GR+  AL + Y+ M QR  +P ++TY  ++  L +  R
Sbjct: 60  EKRGIVPHNAVYNTIIKGLCDNGRVDSAL-VHYRDM-QRHCAPSVITYTILVDALCKSAR 117

Query: 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAA 426
           + +A  +   M+  G   +  TY  +I+G C+   +DEA   ++ ++  S   D + Y  
Sbjct: 118 ISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNI 177

Query: 427 MIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG 486
           +I G C+  +  +    L E+V  G  PN + YN ++D   K     +A+ + + M +  
Sbjct: 178 LIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRD 237

Query: 487 LNPDAVTWRIL 497
             P   T+ ++
Sbjct: 238 CKPSHFTFNLM 248


>gi|147810269|emb|CAN75824.1| hypothetical protein VITISV_004157 [Vitis vinifera]
          Length = 1512

 Score =  219 bits (559), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 138/476 (28%), Positives = 237/476 (49%), Gaps = 9/476 (1%)

Query: 23   RGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVER 82
            RG  P+ V+ TTL+ G      +  A ++FDEM   G+L ++ TY +L+ G+ + R    
Sbjct: 1010 RGFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTKKGLLGDAKTYGILINGLCKARKTG- 1068

Query: 83   ANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFAC 142
               L  KL E+MK   +   +   +  ++D+LC++G   E   +  +M     + +    
Sbjct: 1069 ---LAIKLHEKMKG--NCKGDVFTYGMIIDALCKDGMTTEALDMFSEMIGAGILPDVVVY 1123

Query: 143  GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQ 202
              ++D LCR GR   A      M  RG++  + +YNS++HGL + G        L   + 
Sbjct: 1124 SSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVD 1183

Query: 203  FGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTE 262
             G+ P   T+ +L++GLC E  + +A+++L+ M  K         N  +  LCL+    +
Sbjct: 1184 RGFSPDAFTFTILIDGLCKEGKVGEAQQILELMRHKGKEPDILTYNTLMNGLCLVGQLED 1243

Query: 263  LLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTII 322
               +   +     + +V + N +ING+CK  +I+EA +   +M   K   P  VT+ T+I
Sbjct: 1244 ATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRFFEEMRP-KGLKPSTVTYNTLI 1302

Query: 323  FGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGV 382
              L   GR++ A  L  + M   G    + TY  +L GL +   +EEA ++F  +     
Sbjct: 1303 GALCQSGRVRTAQKLFVE-MQTCGQFLKLSTYCVLLDGLCKNGHLEEAMDLFQSIKKTEH 1361

Query: 383  VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVH 442
              +   ++I++DG+C + +L+EA + +D+I       D   Y  +I GLC  G + EAV 
Sbjct: 1362 KPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVK 1421

Query: 443  FLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD-AVTWRIL 497
             L+++ + G  P+ + +NV+I    K +   EA Q+L EMR    +PD AVT  +L
Sbjct: 1422 LLWQMEEKGCLPDSITFNVIIQNLLKENEIHEAIQLLEEMRNRNFSPDEAVTSMLL 1477



 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 121/503 (24%), Positives = 236/503 (46%), Gaps = 14/503 (2%)

Query: 6    GLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSL 65
            G+ ++ +A KLF        +P   ++  L+    + G     + ++ ++   G+ P+  
Sbjct: 923  GIIKLNDAIKLFDRSLCSEPMPCTDTFNHLLASVAKLGYYSTVFPMYRKINDVGIQPDLY 982

Query: 66   TYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFR 125
            T ++L+      R V     +     +R  E + ++V       LV  +  E  + +  +
Sbjct: 983  TLNILIHCCCSLRAVGCGFGVFGGFLKRGFEPDAVTV-----TTLVKGVWMENGIPDAVQ 1037

Query: 126  IAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLC 185
            + ++M +   + +    G +I+ LC++ R  G +  ++   K      + +Y  I+  LC
Sbjct: 1038 LFDEMTKKGLLGDAKTYGILINGLCKA-RKTGLAIKLHEKMKGNCKGDVFTYGMIIDALC 1096

Query: 186  KHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTR 245
            K G    A  +  E I  G LP    Y  L++GLC    L++A +  + M  +       
Sbjct: 1097 KDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISADVY 1156

Query: 246  ICNIYLRALC---LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
              N  +  L    L K  T  LN+   M+     PD  T   +I+G CK G++ EA ++L
Sbjct: 1157 TYNSLIHGLSRAGLWKEVTWFLNL---MVDRGFSPDAFTFTILIDGLCKEGKVGEAQQIL 1213

Query: 303  NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
             +++  K   PD +T+ T++ GL  VG++++A  L ++ +  RG    + +YN ++ G  
Sbjct: 1214 -ELMRHKGKEPDILTYNTLMNGLCLVGQLEDATKL-FESLADRGIKLNVFSYNILINGYC 1271

Query: 363  RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
            + ++++EA   F  M   G+   + TY  +I  LC+S ++  A++ + ++          
Sbjct: 1272 KDQKIDEAFRFFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLS 1331

Query: 423  VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
             Y  ++ GLC++G + EA+     +  +   PNI  +++++DG C+     EA++   E+
Sbjct: 1332 TYCVLLDGLCKNGHLEEAMDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEI 1391

Query: 483  RKNGLNPDAVTWRILDKLHGNRG 505
             KNGL PD + + IL     N+G
Sbjct: 1392 SKNGLEPDTIAYNILINGLCNKG 1414



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 103/393 (26%), Positives = 190/393 (48%), Gaps = 7/393 (1%)

Query: 1    MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
            +D LC      EA  +F +M   G +P+VV Y++L+ G CR G +  A + F EM   G+
Sbjct: 1092 IDALCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGI 1151

Query: 61   LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
              +  TY+ L+ G+ R    +     +  + +R       S +   F  L+D LC+EG V
Sbjct: 1152 SADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDR-----GFSPDAFTFTILIDGLCKEGKV 1206

Query: 121  NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
             E  +I E M       +      +++ LC  G+   A+++   +  RG+  ++ SYN +
Sbjct: 1207 GEAQQILELMRHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNIL 1266

Query: 181  VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
            ++G CK      A++  EE    G  PS  TY  L+  LC    +  A+K+   M +   
Sbjct: 1267 INGYCKDQKIDEAFRFFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQ 1326

Query: 241  VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
              +     + L  LC   +  E +++   + +T+ +P++   + +++G C+ G++EEA K
Sbjct: 1327 FLKLSTYCVLLDGLCKNGHLEEAMDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWK 1386

Query: 301  VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
               D ++     PD + +  +I GL N G + EA+ LL+Q M ++G  P  +T+N +++ 
Sbjct: 1387 QF-DEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQ-MEEKGCLPDSITFNVIIQN 1444

Query: 361  LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVI 393
            L +   + EA ++   M       D    ++++
Sbjct: 1445 LLKENEIHEAIQLLEEMRNRNFSPDEAVTSMLL 1477


>gi|302787647|ref|XP_002975593.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
 gi|300156594|gb|EFJ23222.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
          Length = 471

 Score =  219 bits (558), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 126/465 (27%), Positives = 248/465 (53%), Gaps = 8/465 (1%)

Query: 27  PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVL 86
           PN  ++  ++  +C+ G++   YK+F++M   G+ P+ + Y++L+ G  +   V+ AN  
Sbjct: 6   PNRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEAN-- 63

Query: 87  MFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMI 146
             +L+E M     L  +   + +L+++ C+E  + E   + + M +     +      +I
Sbjct: 64  --RLYEEMVSV-GLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTII 120

Query: 147 DSLCRSGRNHGASRVVY-VMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY 205
             LC++G+   A  +++  M +RG + + V+YN++++GLCK     RAY+LLEE    GY
Sbjct: 121 SGLCKTGKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGY 180

Query: 206 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 265
           +P   TY  ++ GLC    + +A++    M S+         N  L AL       E + 
Sbjct: 181 VPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMK 240

Query: 266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 325
           +   ++     PD +T N+++ G  +   ++EA ++   MVA   CAP+  T++ ++ G 
Sbjct: 241 LFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVASG-CAPNGATYSIVLSGH 299

Query: 326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 385
               ++ +A  +L + M + G  P +VTYN +L GL +   V++A E+F+ M+  G   D
Sbjct: 300 CRAKKVDDAHKVLEE-MSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPD 358

Query: 386 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY 445
             +Y++V++GLC++N++ +A+  +D ++    + D   +  ++ GLC++GK+ EA   L 
Sbjct: 359 IVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLD 418

Query: 446 ELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD 490
           ++  SG  P+ V YN +++G  K     +A ++ + M++ G   D
Sbjct: 419 QMTCSGCAPDYVAYNTLMNGLRKQGRHIQADRLTQAMKEKGFLSD 463



 Score =  205 bits (522), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 124/444 (27%), Positives = 224/444 (50%), Gaps = 45/444 (10%)

Query: 55  MRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSL 114
           MR C   PN  T+ V+++   +   +       +KL+E+M +   +S +   +  L+D  
Sbjct: 1   MRECS--PNRYTFRVVLKSFCKQGKLRDG----YKLFEQMLDN-GISPDGIEYNILIDGY 53

Query: 115 CREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSL 174
            ++G V+E  R+ E+M         +    ++++ C+  +   A  +   M ++G  P +
Sbjct: 54  AKKGRVDEANRLYEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDV 113

Query: 175 VSYNSIVHGLCKHGGCMRAYQLL-EEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQ 233
           V+Y++I+ GLCK G    A ++L  + I+ G   +   Y  L+ GLC + ++E+A K+L+
Sbjct: 114 VTYSTIISGLCKTGKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLE 173

Query: 234 FMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMG 293
            M SK  V                                   PD IT NT+++G C+MG
Sbjct: 174 EMASKGYV-----------------------------------PDNITYNTILSGLCRMG 198

Query: 294 RIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVT 353
           ++ EA +  + M +  + +PD V +  ++  L   G+  EA+ L   V+  +GY P  VT
Sbjct: 199 KVSEAKQFFDSMPSRGY-SPDVVAYNGLLDALYKEGKTDEAMKLFKDVI-AKGYMPDTVT 256

Query: 354 YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413
           YN++L GL R   ++EA+E+F  M+  G   +  TY+IV+ G C + ++D+A +  +++ 
Sbjct: 257 YNSILLGLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAHKVLEEMS 316

Query: 414 WPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKR 473
               + D   Y  ++ GLC++  + +A      +VD+G  P+IV Y+VV++G CK +   
Sbjct: 317 KIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVH 376

Query: 474 EAYQILREMRKNGLNPDAVTWRIL 497
           +A  +   M +  L PD VT+ IL
Sbjct: 377 DARVLFDRMIERKLVPDVVTFNIL 400



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 112/401 (27%), Positives = 213/401 (53%), Gaps = 8/401 (1%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           RV EA++L+ +M S G  P++ +Y +L++ +C+  +M  A ++F  M   G  P+ +TYS
Sbjct: 58  RVDEANRLYEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYS 117

Query: 69  VLVRGVLRTRDVERANVLMF-KLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIA 127
            ++ G+ +T  V  A  ++F K+ ER       S N  A+  L++ LC++  +   +++ 
Sbjct: 118 TIISGLCKTGKVTEALEMLFHKMIER-----GCSANTVAYNALINGLCKDENIERAYKLL 172

Query: 128 EDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKH 187
           E+M     V +      ++  LCR G+   A +    M  RG +P +V+YN ++  L K 
Sbjct: 173 EEMASKGYVPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKE 232

Query: 188 GGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC 247
           G    A +L ++ I  GY+P   TY  ++ GL  +S++++A ++ + M++          
Sbjct: 233 GKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVASGCAPNGATY 292

Query: 248 NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA 307
           +I L   C  K   +   VL  M +    PDV+T N +++G CK   +++A ++ + MV 
Sbjct: 293 SIVLSGHCRAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVD 352

Query: 308 GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRV 367
              CAPD V+++ ++ GL    ++ +A  +L+  M +R   P +VT+N ++ GL +  ++
Sbjct: 353 NG-CAPDIVSYSVVLNGLCKTNKVHDA-RVLFDRMIERKLVPDVVTFNILMDGLCKAGKL 410

Query: 368 EEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRF 408
           +EAK++ + M   G   D   Y  +++GL +  +  +A R 
Sbjct: 411 DEAKDLLDQMTCSGCAPDYVAYNTLMNGLRKQGRHIQADRL 451



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 125/454 (27%), Positives = 225/454 (49%), Gaps = 12/454 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +   C   ++ + +KLF  M   G  P+ + Y  LI GY + G +D A ++++EM   G+
Sbjct: 15  LKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEANRLYEEMVSVGL 74

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+  TY+ L+    +   ++ A + +FK       E D+      ++ ++  LC+ G V
Sbjct: 75  EPSIYTYNSLLNAFCKETKMKEA-MELFKTMAEKGFEPDV----VTYSTIISGLCKTGKV 129

Query: 121 NEVFRIA--EDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
            E   +   + + +G S N   A   +I+ LC+      A +++  M  +G  P  ++YN
Sbjct: 130 TEALEMLFHKMIERGCSAN-TVAYNALINGLCKDENIERAYKLLEEMASKGYVPDNITYN 188

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
           +I+ GLC+ G    A Q  +     GY P    Y  L++ L  E   ++A K+ + +++K
Sbjct: 189 TILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAK 248

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
             +  T   N  L  L    N  E   +   M+ + C P+  T + V++G C+  ++++A
Sbjct: 249 GYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDA 308

Query: 299 LKVLNDMVAGKFCA-PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
            KVL +M   K  A PD VT+  ++ GL     + +A + L+  M   G +P IV+Y+ V
Sbjct: 309 HKVLEEM--SKIGAVPDVVTYNILLDGLCKTNLVDKA-HELFSTMVDNGCAPDIVSYSVV 365

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 417
           L GL +  +V +A+ +F+ M+   +V D  T+ I++DGLC++ +LDEAK   D +     
Sbjct: 366 LNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDQMTCSGC 425

Query: 418 IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 451
             D   Y  ++ GL + G+  +A      + + G
Sbjct: 426 APDYVAYNTLMNGLRKQGRHIQADRLTQAMKEKG 459



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 116/206 (56%), Gaps = 8/206 (3%)

Query: 4   LCGLSR---VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           L GL+R   + EA ++F  M + G  PN  +Y+ ++ G+CR  ++D A+KV +EM   G 
Sbjct: 261 LLGLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAHKVLEEMSKIGA 320

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P+ +TY++L+ G+ +T  V++A+ L   + +        + +  +++ +++ LC+   V
Sbjct: 321 VPDVVTYNILLDGLCKTNLVDKAHELFSTMVDN-----GCAPDIVSYSVVLNGLCKTNKV 375

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           ++   + + M + K V +      ++D LC++G+   A  ++  M   G  P  V+YN++
Sbjct: 376 HDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDQMTCSGCAPDYVAYNTL 435

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYL 206
           ++GL K G  ++A +L +   + G+L
Sbjct: 436 MNGLRKQGRHIQADRLTQAMKEKGFL 461



 Score = 40.4 bits (93), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 16/53 (30%), Positives = 29/53 (54%)

Query: 453 TPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
           +PN   + VV+   CK    R+ Y++  +M  NG++PD + + IL   +  +G
Sbjct: 5   SPNRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKG 57


>gi|357125354|ref|XP_003564359.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 665

 Score =  219 bits (558), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 139/491 (28%), Positives = 244/491 (49%), Gaps = 13/491 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R  +A ++    +  G   +V +Y TL+ GYCR G +D A ++   M    V P+
Sbjct: 80  LCRRGRTSDAARVLRTAEGSGAPVDVFAYNTLVAGYCRYGRLDAARRLIASM---PVPPD 136

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           + TY+ L+RG+    D  R    +  L + ++ E   SV    +  L++++C+     + 
Sbjct: 137 AYTYTPLIRGLC---DRGRVGDALSLLDDMLRRECQPSV--VTYTVLLEAVCKSSGFGQA 191

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            ++ ++M              +I+ +CR  R   A +++  +   G  P  VSY +++ G
Sbjct: 192 MKVLDEMRAKGCTPNIVTYNVIINGMCREDRVDDARQILNRLSSYGFQPDTVSYTTVLKG 251

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LC          L  E ++   +P+E T+ +LV   C    +E+A +VL  M        
Sbjct: 252 LCAAKRWEDVEVLFCEMVENNCVPNEVTFDMLVRFFCRGGMVERAIEVLDRMSEHGCTAN 311

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
           T +CNI + ++C      +    L  M    C PD I+  TV+ G C+ GR E+A ++LN
Sbjct: 312 TTLCNIVINSICKQGRVDDAFEFLNNMGSYGCSPDTISYTTVLKGLCRAGRWEDAKELLN 371

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           +MV  K C P+ VTF T I  L   G I +A+ LL + MP+ G S GIVTYNA++ G   
Sbjct: 372 EMVR-KNCPPNEVTFNTFICILCQKGLIDQAI-LLIEQMPEYGCSVGIVTYNALVNGFCV 429

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
             RV+ A E+FN    +    ++ TY  ++ GLC + +LD A     +++      +   
Sbjct: 430 QGRVDSALELFN---SLPCEPNTITYTTLLTGLCHAERLDAAAELLAEMMQNDCPLNVVT 486

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           +  ++   C+ G + EA+  + ++++ G TPN++ +N ++DG  +     EA ++L  + 
Sbjct: 487 FNVLVSFFCQKGFVEEAIELVQQMMEHGCTPNLITFNTLLDGITEDCNSEEALELLHGLV 546

Query: 484 KNGLNPDAVTW 494
             G++ D +T+
Sbjct: 547 SKGISLDTITY 557



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 136/494 (27%), Positives = 232/494 (46%), Gaps = 10/494 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   RVG+A  L  DM  R   P+VV+YT L+   C++     A KV DEMR  G  PN
Sbjct: 147 LCDRGRVGDALSLLDDMLRRECQPSVVTYTVLLEAVCKSSGFGQAMKVLDEMRAKGCTPN 206

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY+V++ G+ R   V+ A  ++ +L     + + +S     +  ++  LC      +V
Sbjct: 207 IVTYNVIINGMCREDRVDDARQILNRLSSYGFQPDTVS-----YTTVLKGLCAAKRWEDV 261

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             +  +M +   V  E     ++   CR G    A  V+  M + G T +    N +++ 
Sbjct: 262 EVLFCEMVENNCVPNEVTFDMLVRFFCRGGMVERAIEVLDRMSEHGCTANTTLCNIVINS 321

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           +CK G    A++ L     +G  P   +Y  +++GLC     E A+++L  M+ K     
Sbjct: 322 ICKQGRVDDAFEFLNNMGSYGCSPDTISYTTVLKGLCRAGRWEDAKELLNEMVRKNCPPN 381

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               N ++  LC      + + ++  M +  C   ++T N ++NGFC  GR++ AL++ N
Sbjct: 382 EVTFNTFICILCQKGLIDQAILLIEQMPEYGCSVGIVTYNALVNGFCVQGRVDSALELFN 441

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            +     C P+ +T+TT++ GL +  R+  A  LL ++M Q      +VT+N ++    +
Sbjct: 442 SLP----CEPNTITYTTLLTGLCHAERLDAAAELLAEMM-QNDCPLNVVTFNVLVSFFCQ 496

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
              VEEA E+   M+  G   +  T+  ++DG+ E    +EA      +V      D   
Sbjct: 497 KGFVEEAIELVQQMMEHGCTPNLITFNTLLDGITEDCNSEEALELLHGLVSKGISLDTIT 556

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y++++  L R  +I EAV   + + D G+ P  V YN ++   CK      A      M 
Sbjct: 557 YSSIVDVLSREDRIEEAVQMFHAVQDMGMRPKAVMYNKILSALCKRCETDRAIDFFAHMV 616

Query: 484 KNGLNPDAVTWRIL 497
            N   P+  T+ IL
Sbjct: 617 SNSCMPNESTYVIL 630



 Score =  198 bits (503), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 122/490 (24%), Positives = 242/490 (49%), Gaps = 16/490 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ +C  S  G+A K+  +M+++G  PN+V+Y  +I+G CR   +D A ++ + +   G 
Sbjct: 179 LEAVCKSSGFGQAMKVLDEMRAKGCTPNIVTYNVIINGMCREDRVDDARQILNRLSSYGF 238

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P++++Y+ +++G+   +  E   VL  ++      E +   N   F  LV   CR G V
Sbjct: 239 QPDTVSYTTVLKGLCAAKRWEDVEVLFCEMV-----ENNCVPNEVTFDMLVRFFCRGGMV 293

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                + + M +         C  +I+S+C+ GR   A   +  M   G +P  +SY ++
Sbjct: 294 ERAIEVLDRMSEHGCTANTTLCNIVINSICKQGRVDDAFEFLNNMGSYGCSPDTISYTTV 353

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GLC+ G    A +LL E ++    P+E T+   +  LC +  +++A  +++ M     
Sbjct: 354 LKGLCRAGRWEDAKELLNEMVRKNCPPNEVTFNTFICILCQKGLIDQAILLIEQMPEYGC 413

Query: 241 VDRTRICNIYLRALCL---IKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
                  N  +   C+   + +  EL N L       C+P+ IT  T++ G C   R++ 
Sbjct: 414 SVGIVTYNALVNGFCVQGRVDSALELFNSL------PCEPNTITYTTLLTGLCHAERLDA 467

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           A ++L +M+    C  + VTF  ++      G ++EA+ L+ Q+M + G +P ++T+N +
Sbjct: 468 AAELLAEMMQND-CPLNVVTFNVLVSFFCQKGFVEEAIELVQQMM-EHGCTPNLITFNTL 525

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 417
           L G+      EEA E+ + ++  G+  D+ TY+ ++D L   ++++EA + +  +     
Sbjct: 526 LDGITEDCNSEEALELLHGLVSKGISLDTITYSSIVDVLSREDRIEEAVQMFHAVQDMGM 585

Query: 418 IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQ 477
                +Y  ++  LC+  +   A+ F   +V +   PN   Y ++I+G  +  + +EA  
Sbjct: 586 RPKAVMYNKILSALCKRCETDRAIDFFAHMVSNSCMPNESTYVILIEGLAREGLLKEARY 645

Query: 478 ILREMRKNGL 487
           +L E+   G+
Sbjct: 646 VLSELCSRGV 655



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 128/496 (25%), Positives = 212/496 (42%), Gaps = 48/496 (9%)

Query: 10  VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSV 69
           + EA +L     SRG  P+V   T LI   CR G    A +V                  
Sbjct: 51  LAEAARLVERSTSRGEAPDVYLCTKLIRNLCRRGRTSDAARV------------------ 92

Query: 70  LVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAED 129
                LRT +   A V +F                 A+  LV   CR G ++   R+   
Sbjct: 93  -----LRTAEGSGAPVDVF-----------------AYNTLVAGYCRYGRLDAARRLIAS 130

Query: 130 MPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG 189
           MP      + +    +I  LC  GR   A  ++  M +R   PS+V+Y  ++  +CK  G
Sbjct: 131 MPVPP---DAYTYTPLIRGLCDRGRVGDALSLLDDMLRRECQPSVVTYTVLLEAVCKSSG 187

Query: 190 CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNI 249
             +A ++L+E    G  P+  TY V++ G+C E  ++ AR++L  + S      T     
Sbjct: 188 FGQAMKVLDEMRAKGCTPNIVTYNVIINGMCREDRVDDARQILNRLSSYGFQPDTVSYTT 247

Query: 250 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK 309
            L+ LC  K   ++  +   M++  C P+ +T + ++  FC+ G +E A++VL D ++  
Sbjct: 248 VLKGLCAAKRWEDVEVLFCEMVENNCVPNEVTFDMLVRFFCRGGMVERAIEVL-DRMSEH 306

Query: 310 FCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEE 369
            C  +      +I  +   GR+ +A   L   M   G SP  ++Y  VL+GL R  R E+
Sbjct: 307 GCTANTTLCNIVINSICKQGRVDDAFEFLNN-MGSYGCSPDTISYTTVLKGLCRAGRWED 365

Query: 370 AKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIK 429
           AKE+ N M+      +  T+   I  LC+   +D+A    + +           Y A++ 
Sbjct: 366 AKELLNEMVRKNCPPNEVTFNTFICILCQKGLIDQAILLIEQMPEYGCSVGIVTYNALVN 425

Query: 430 GLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNP 489
           G C  G++  A+     L      PN + Y  ++ G C       A ++L EM +N    
Sbjct: 426 GFCVQGRVDSALELFNSL---PCEPNTITYTTLLTGLCHAERLDAAAELLAEMMQNDCPL 482

Query: 490 DAVTWRILDKLHGNRG 505
           + VT+ +L      +G
Sbjct: 483 NVVTFNVLVSFFCQKG 498



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 79/315 (25%), Positives = 149/315 (47%), Gaps = 38/315 (12%)

Query: 219 LCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPD 278
           L    DL +A ++++   S+ +     +C   +R LC     ++   VL     +    D
Sbjct: 45  LIARDDLAEAARLVERSTSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRTAEGSGAPVD 104

Query: 279 VITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLL 338
           V   NT++ G+C+ GR++ A +++  M       PDA T+T +I GL + GR+ +AL+LL
Sbjct: 105 VFAYNTLVAGYCRYGRLDAARRLIASMPV----PPDAYTYTPLIRGLCDRGRVGDALSLL 160

Query: 339 --------------YQV--------------------MPQRGYSPGIVTYNAVLRGLFRL 364
                         Y V                    M  +G +P IVTYN ++ G+ R 
Sbjct: 161 DDMLRRECQPSVVTYTVLLEAVCKSSGFGQAMKVLDEMRAKGCTPNIVTYNVIINGMCRE 220

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY 424
            RV++A+++ N +   G   D+ +Y  V+ GLC + + ++ +  + ++V  + + +   +
Sbjct: 221 DRVDDARQILNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEVLFCEMVENNCVPNEVTF 280

Query: 425 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484
             +++  CR G +  A+  L  + + G T N    N+VI+  CK     +A++ L  M  
Sbjct: 281 DMLVRFFCRGGMVERAIEVLDRMSEHGCTANTTLCNIVINSICKQGRVDDAFEFLNNMGS 340

Query: 485 NGLNPDAVTWRILDK 499
            G +PD +++  + K
Sbjct: 341 YGCSPDTISYTTVLK 355



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 112/454 (24%), Positives = 200/454 (44%), Gaps = 76/454 (16%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ +C   RV +A ++   + S G  P+ VSYTT++ G C     +    +F EM     
Sbjct: 214 INGMCREDRVDDARQILNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEVLFCEMVENNC 273

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLV-DSLCREGY 119
           +PN +T+ +LVR   R   VERA     ++ +RM E       N    N+V +S+C++G 
Sbjct: 274 VPNEVTFDMLVRFFCRGGMVERA----IEVLDRMSEHG--CTANTTLCNIVINSICKQGR 327

Query: 120 VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           V++ F    +M       +  +   ++  LCR+GR   A  ++  M ++   P+ V++N+
Sbjct: 328 VDDAFEFLNNMGSYGCSPDTISYTTVLKGLCRAGRWEDAKELLNEMVRKNCPPNEVTFNT 387

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFG-----------------------------YLPSEH 210
            +  LC+ G   +A  L+E+  ++G                              LP E 
Sbjct: 388 FICILCQKGLIDQAILLIEQMPEYGCSVGIVTYNALVNGFCVQGRVDSALELFNSLPCEP 447

Query: 211 ---TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVL 267
              TY  L+ GLC    L+ A ++L  M+           N+ +   C      E + ++
Sbjct: 448 NTITYTTLLTGLCHAERLDAAAELLAEMMQNDCPLNVVTFNVLVSFFCQKGFVEEAIELV 507

Query: 268 VFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLN 327
             M++  C P++IT NT+++G  +    EEAL++L+ +V+ K  + D +T+++I+  L  
Sbjct: 508 QQMMEHGCTPNLITFNTLLDGITEDCNSEEALELLHGLVS-KGISLDTITYSSIVDVLSR 566

Query: 328 VGRIQEALNLLYQVMPQRGYSPGIVTYNAVL----------------------------- 358
             RI+EA+ + + V    G  P  V YN +L                             
Sbjct: 567 EDRIEEAVQMFHAVQ-DMGMRPKAVMYNKILSALCKRCETDRAIDFFAHMVSNSCMPNES 625

Query: 359 ------RGLFRLRRVEEAKEVFNCMLGIGVVADS 386
                  GL R   ++EA+ V + +   GV++ S
Sbjct: 626 TYVILIEGLAREGLLKEARYVLSELCSRGVLSKS 659



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/278 (24%), Positives = 120/278 (43%), Gaps = 43/278 (15%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC    + +A  L   M   G    +V+Y  L++G+C  G +D A ++F+ +      PN
Sbjct: 392 LCQKGLIDQAILLIEQMPEYGCSVGIVTYNALVNGFCVQGRVDSALELFNSL---PCEPN 448

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           ++TY+ L+ G+     ++ A  L+ ++ +      D  +N   F  LV   C++G+V E 
Sbjct: 449 TITYTTLLTGLCHAERLDAAAELLAEMMQ-----NDCPLNVVTFNVLVSFFCQKGFVEEA 503

Query: 124 FRIAEDMPQ-----------------GKSVNEEFAC------------------GHMIDS 148
             + + M +                  +  N E A                     ++D 
Sbjct: 504 IELVQQMMEHGCTPNLITFNTLLDGITEDCNSEEALELLHGLVSKGISLDTITYSSIVDV 563

Query: 149 LCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPS 208
           L R  R   A ++ + ++  G+ P  V YN I+  LCK     RA       +    +P+
Sbjct: 564 LSREDRIEEAVQMFHAVQDMGMRPKAVMYNKILSALCKRCETDRAIDFFAHMVSNSCMPN 623

Query: 209 EHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRI 246
           E TY +L+EGL  E  L++AR VL  + S+  + ++ I
Sbjct: 624 ESTYVILIEGLAREGLLKEARYVLSELCSRGVLSKSLI 661



 Score = 44.7 bits (104), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 3/106 (2%)

Query: 400 NQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCY 459
           + L EA R  +         D Y+   +I+ LCR G+  +A   L     SG   ++  Y
Sbjct: 49  DDLAEAARLVERSTSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRTAEGSGAPVDVFAY 108

Query: 460 NVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
           N ++ G C+      A +++  M    + PDA T+  L +   +RG
Sbjct: 109 NTLVAGYCRYGRLDAARRLIASM---PVPPDAYTYTPLIRGLCDRG 151


>gi|115441099|ref|NP_001044829.1| Os01g0852900 [Oryza sativa Japonica Group]
 gi|18461197|dbj|BAB84394.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113534360|dbj|BAF06743.1| Os01g0852900 [Oryza sativa Japonica Group]
 gi|125572662|gb|EAZ14177.1| hypothetical protein OsJ_04103 [Oryza sativa Japonica Group]
          Length = 703

 Score =  219 bits (558), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 144/532 (27%), Positives = 254/532 (47%), Gaps = 44/532 (8%)

Query: 3   QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
            LC    +  A  LF  ++ R   P+ ++Y+TL+ G  +   +D A  + DEM    V P
Sbjct: 167 SLCARGDLDRAVTLFDSLRRRQVAPDRITYSTLMCGLAKQDRLDHALDLLDEMPRSRVQP 226

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           + + Y+ L+ G  +  + E+    + ++W+++ ++     N A +  ++D LC+ G   E
Sbjct: 227 DVVCYNALLGGCFKAGEFEK----VMRVWDKLVKDPGARPNLATYNVMLDGLCKFGRFKE 282

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
           V  + E M       +    G +I  LCRSG   GA+RV   + K GL      YNS+V 
Sbjct: 283 VGEVWERMVANNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVIDAAMYNSLVK 342

Query: 183 GLCKHGGCMRAYQ---------------------------LLEEGIQFGYL--------P 207
           G C+ G    A++                           +++E I+   L        P
Sbjct: 343 GFCQAGRVQEAWKFWDSAGFAGLRNLRTYNIMIKGLFDSGMVDEAIELWDLLEKDVACIP 402

Query: 208 SEHTYKVLVEGLCGESDLEKARKVLQ-FMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 266
              T+  L+ GLC      KA  + +   +S K +D     ++ +  LC +    + + V
Sbjct: 403 DTVTFGTLIHGLCQNGFANKAFTIFEEARVSGKQLDVFSYSSM-INGLCNVGRLVDAVKV 461

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
              M +  C+P+    N +I+GFC++ R  +A+++ + M A   C+P  +T+ T+I GL 
Sbjct: 462 YEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSKM-ADNGCSPTVITYNTLIDGLC 520

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
              + QEA ++  + M + G++P I TY +++RGLF  +++++A  ++  +L  G+  D 
Sbjct: 521 KAEKYQEASSVARE-MVENGFTPDITTYGSLIRGLFSDKKIDDALSIWKQILYKGLKVDV 579

Query: 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV-YAAMIKGLCRSGKIHEAVHFLY 445
             + I+I GLC + ++DEA   + D+    N   N V Y  ++ GL  +G I +A     
Sbjct: 580 MMHNILIHGLCSAGKVDEALHVFSDMKEKKNCPPNLVTYNTLMDGLYETGYIDKAATLWT 639

Query: 446 ELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            + + G+ P+I+ YN  I G C      E  Q+L E+   G+ P  +TW IL
Sbjct: 640 SITEDGLEPDIISYNTRIKGLCSCDRIHEGIQLLDEVLSRGIIPTVITWNIL 691



 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 126/471 (26%), Positives = 219/471 (46%), Gaps = 47/471 (9%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   R  E  +++  M +    P+V++Y  LIHG CR+G++D A +V+ E+   G+
Sbjct: 271 LDGLCKFGRFKEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGL 330

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWER--MKEEEDLSVNNAAFANLVDSLCREG 118
           + ++  Y+ LV+G  +   V+ A    +K W+        +L   N     L DS    G
Sbjct: 331 VIDAAMYNSLVKGFCQAGRVQEA----WKFWDSAGFAGLRNLRTYNIMIKGLFDS----G 382

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
            V+E   + +       + ++ AC                             P  V++ 
Sbjct: 383 MVDEAIELWD------LLEKDVAC----------------------------IPDTVTFG 408

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
           +++HGLC++G   +A+ + EE    G      +Y  ++ GLC    L  A KV + M   
Sbjct: 409 TLIHGLCQNGFANKAFTIFEEARVSGKQLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKD 468

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
                + I N  +   C +   ++ + +   M    C P VIT NT+I+G CK  + +EA
Sbjct: 469 GCKPNSHIYNALISGFCQVYRTSDAVRIYSKMADNGCSPTVITYNTLIDGLCKAEKYQEA 528

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
             V  +MV   F  PD  T+ ++I GL +  +I +AL++  Q++  +G    ++ +N ++
Sbjct: 529 SSVAREMVENGF-TPDITTYGSLIRGLFSDKKIDDALSIWKQIL-YKGLKVDVMMHNILI 586

Query: 359 RGLFRLRRVEEAKEVFNCML-GIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 417
            GL    +V+EA  VF+ M        +  TY  ++DGL E+  +D+A   W  I     
Sbjct: 587 HGLCSAGKVDEALHVFSDMKEKKNCPPNLVTYNTLMDGLYETGYIDKAATLWTSITEDGL 646

Query: 418 IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACK 468
             D   Y   IKGLC   +IHE +  L E++  G+ P ++ +N+++    K
Sbjct: 647 EPDIISYNTRIKGLCSCDRIHEGIQLLDEVLSRGIIPTVITWNILVRAVIK 697



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 78/263 (29%), Positives = 135/263 (51%), Gaps = 5/263 (1%)

Query: 248 NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA 307
           NI LR+LC   +    + +   + + Q  PD IT +T++ G  K  R++ AL +L++M  
Sbjct: 162 NIVLRSLCARGDLDRAVTLFDSLRRRQVAPDRITYSTLMCGLAKQDRLDHALDLLDEMPR 221

Query: 308 GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRV 367
            +   PD V +  ++ G    G  ++ + +  +++   G  P + TYN +L GL +  R 
Sbjct: 222 SR-VQPDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDGLCKFGRF 280

Query: 368 EEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAM 427
           +E  EV+  M+   +  D  TY I+I GLC S  +D A R + +I+    + D  +Y ++
Sbjct: 281 KEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVIDAAMYNSL 340

Query: 428 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN-G 486
           +KG C++G++ EA  F      +G+  N+  YN++I G     M  EA ++   + K+  
Sbjct: 341 VKGFCQAGRVQEAWKFWDSAGFAGLR-NLRTYNIMIKGLFDSGMVDEAIELWDLLEKDVA 399

Query: 487 LNPDAVTWRILDKLHGNRGNDFG 509
             PD VT+  L  +HG   N F 
Sbjct: 400 CIPDTVTFGTL--IHGLCQNGFA 420



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 86/205 (41%), Gaps = 43/205 (20%)

Query: 339 YQVMPQ-RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCM----LGIGVVADSTTYAIVI 393
           ++ +P   G +PGI ++NA+L    R RR  +A   F  +     G  +  +  TY IV+
Sbjct: 106 FRALPSILGCNPGIRSHNALLDAFVRARRFSDADAFFASLSHGAFGRRIAPNLQTYNIVL 165

Query: 394 DGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVT 453
             LC    LD A   +D +       D   Y+ ++ GL +  ++  A+  L E+  S V 
Sbjct: 166 RSLCARGDLDRAVTLFDSLRRRQVAPDRITYSTLMCGLAKQDRLDHALDLLDEMPRSRVQ 225

Query: 454 PNIVC------------------------------------YNVVIDGACKLSMKREAYQ 477
           P++VC                                    YNV++DG CK    +E  +
Sbjct: 226 PDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDGLCKFGRFKEVGE 285

Query: 478 ILREMRKNGLNPDAVTWRILDKLHG 502
           +   M  N L PD +T+ IL  +HG
Sbjct: 286 VWERMVANNLQPDVITYGIL--IHG 308



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 93/216 (43%), Gaps = 31/216 (14%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C + R  +A +++  M   G  P V++Y TLI G C+  +   A  V  EM   G  P+
Sbjct: 484 FCQVYRTSDAVRIYSKMADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMVENGFTPD 543

Query: 64  SLTYSVLVRGVLRTRDVERA-------------------NVLMFKL------------WE 92
             TY  L+RG+   + ++ A                   N+L+  L            + 
Sbjct: 544 ITTYGSLIRGLFSDKKIDDALSIWKQILYKGLKVDVMMHNILIHGLCSAGKVDEALHVFS 603

Query: 93  RMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRS 152
            MKE+++   N   +  L+D L   GY+++   +   + +     +  +    I  LC  
Sbjct: 604 DMKEKKNCPPNLVTYNTLMDGLYETGYIDKAATLWTSITEDGLEPDIISYNTRIKGLCSC 663

Query: 153 GRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
            R H   +++  +  RG+ P+++++N +V  + K+G
Sbjct: 664 DRIHEGIQLLDEVLSRGIIPTVITWNILVRAVIKYG 699


>gi|225436658|ref|XP_002276327.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Vitis vinifera]
          Length = 728

 Score =  219 bits (558), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 144/497 (28%), Positives = 249/497 (50%), Gaps = 46/497 (9%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC    V EA  L  +M  +   P++VSY TLI+G C+  ++  A  +  EM   G  PN
Sbjct: 154 LCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPN 213

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           S+T + L+ G+ +   ++ A     +L E MK ++    +   +  L+   C  G ++  
Sbjct: 214 SVTCTTLMDGLCKDGRMDEA----MELLEAMK-KKGFDADVVLYGTLISGFCNNGNLDRG 268

Query: 124 FRIAEDM-PQGKSVN-EEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
             + ++M  +G S N   ++C  ++  LCR G+   A+ V+  M + G+ P +V+Y  ++
Sbjct: 269 KELFDEMLGKGISANVVTYSC--LVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLI 326

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
            GLCK G    A  LL   ++ G  PS  TY VL+ GLC E  +  A K+L+ M+ K   
Sbjct: 327 DGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGK- 385

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
                                             + DV+T NT++ G C  G+++EALK+
Sbjct: 386 ----------------------------------KADVVTYNTLMKGLCDKGKVDEALKL 411

Query: 302 LNDMVAGKFC-APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
            N M   + C  P+  TF  +I GL   GR+ +A+  +++ M ++G    +VTYN +L G
Sbjct: 412 FNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVK-IHRKMVKKGSCGNLVTYNMLLGG 470

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
             +  +++EA E++  +L +G V +S TY+I+IDG C+   L+ AK  + ++        
Sbjct: 471 CLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPA 530

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
            + Y  ++  LC+ G + +A     E+ ++   P+I+ +N +IDG  K    +   ++  
Sbjct: 531 LFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQM 590

Query: 481 EMRKNGLNPDAVTWRIL 497
           +M + GL PDA+T+  L
Sbjct: 591 KMVEMGLRPDALTFSTL 607



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 136/506 (26%), Positives = 229/506 (45%), Gaps = 75/506 (14%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           MD LC   R+ EA +L   MK +G   +VV Y TLI G+C  G +D   ++FDEM   G+
Sbjct: 221 MDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGI 280

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             N +TYS LV G+ R    + AN ++  +      E  +  +   +  L+D LC++   
Sbjct: 281 SANVVTYSCLVHGLCRLGQWKEANTVLNAM-----AEHGIHPDVVTYTGLIDGLCKD--- 332

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                                           GR   A  ++ +M ++G  PS V+YN +
Sbjct: 333 --------------------------------GRATHAMDLLNLMVEKGEEPSNVTYNVL 360

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GLCK G  + A+++L   I+ G      TY  L++GLC +  +++A K+   M   ++
Sbjct: 361 LSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNEN 420

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                         CL  N                   V T N +I G CK GR+ +A+K
Sbjct: 421 --------------CLEPN-------------------VFTFNMLIGGLCKEGRLTKAVK 447

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +   MV    C  + VT+  ++ G L  G+I+EA+ L  QV+   G+ P   TY+ ++ G
Sbjct: 448 IHRKMVKKGSCG-NLVTYNMLLGGCLKAGKIKEAMELWKQVL-DLGFVPNSFTYSILIDG 505

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
             ++R +  AK +F  M   G+      Y  ++  LC+   L++AK  + ++   +   D
Sbjct: 506 FCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPD 565

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              +  MI G  ++G          ++V+ G+ P+ + ++ +I+   KL    EA   L 
Sbjct: 566 IISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFSTLINRLSKLGELDEAKSALE 625

Query: 481 EMRKNGLNPDAVTWRILDKLHGNRGN 506
            M  +G  PDA+ +  L K   ++G+
Sbjct: 626 RMVASGFTPDALVYDSLLKGLSSKGD 651



 Score =  161 bits (408), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 102/336 (30%), Positives = 169/336 (50%), Gaps = 2/336 (0%)

Query: 170 LTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKAR 229
           L PS  + N +V  L +      A+ +         LPS  +   L+E        +   
Sbjct: 70  LLPSWATCNFLVDALARSRNYGLAFSVYRRMTHVDVLPSFGSLSALIECFADAQKPQLGF 129

Query: 230 KVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGF 289
            V+  +L +       I NI L+ LC      E + ++  M +    PD+++ NT+ING 
Sbjct: 130 GVVGLVLKRGFTVNVFIMNIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGL 189

Query: 290 CKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSP 349
           CK  +++EA+ +L +M A   C P++VT TT++ GL   GR+ EA+ LL + M ++G+  
Sbjct: 190 CKAKKLKEAVGLLLEMEAAG-CFPNSVTCTTLMDGLCKDGRMDEAMELL-EAMKKKGFDA 247

Query: 350 GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFW 409
            +V Y  ++ G      ++  KE+F+ MLG G+ A+  TY+ ++ GLC   Q  EA    
Sbjct: 248 DVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVL 307

Query: 410 DDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKL 469
           + +       D   Y  +I GLC+ G+   A+  L  +V+ G  P+ V YNV++ G CK 
Sbjct: 308 NAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKE 367

Query: 470 SMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
            +  +A++ILR M + G   D VT+  L K   ++G
Sbjct: 368 GLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKG 403



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 104/390 (26%), Positives = 188/390 (48%), Gaps = 4/390 (1%)

Query: 110 LVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRG 169
           LVD+L R       F +   M     +    +   +I+    + +      VV ++ KRG
Sbjct: 80  LVDALARSRNYGLAFSVYRRMTHVDVLPSFGSLSALIECFADAQKPQLGFGVVGLVLKRG 139

Query: 170 LTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKAR 229
            T ++   N ++ GLC++GG   A  L+ E  +    P   +Y  L+ GLC    L++A 
Sbjct: 140 FTVNVFIMNIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAV 199

Query: 230 KVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGF 289
            +L  M +      +  C   +  LC      E + +L  M +     DV+   T+I+GF
Sbjct: 200 GLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGF 259

Query: 290 CKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSP 349
           C  G ++   ++ ++M+ GK  + + VT++ ++ GL  +G+ +EA N +   M + G  P
Sbjct: 260 CNNGNLDRGKELFDEML-GKGISANVVTYSCLVHGLCRLGQWKEA-NTVLNAMAEHGIHP 317

Query: 350 GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFW 409
            +VTY  ++ GL +  R   A ++ N M+  G    + TY +++ GLC+   + +A +  
Sbjct: 318 DVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKIL 377

Query: 410 DDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG--VTPNIVCYNVVIDGAC 467
             ++      D   Y  ++KGLC  GK+ EA+     + D+   + PN+  +N++I G C
Sbjct: 378 RMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLC 437

Query: 468 KLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           K     +A +I R+M K G   + VT+ +L
Sbjct: 438 KEGRLTKAVKIHRKMVKKGSCGNLVTYNML 467



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 69/285 (24%), Positives = 131/285 (45%), Gaps = 9/285 (3%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R+ +A K+   M  +G   N+V+Y  L+ G  + G++  A +++ ++   G +PN
Sbjct: 436 LCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPN 495

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAF--ANLVDSLCREGYVN 121
           S TYS+L+ G  + R +  A  L  ++           +N A F    L+ SLC+EG + 
Sbjct: 496 SFTYSILIDGFCKMRMLNIAKGLFCEMRTH-------GLNPALFDYNTLMASLCKEGSLE 548

Query: 122 EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
           +   + ++M       +  +   MID   ++G       +   M + GL P  +++++++
Sbjct: 549 QAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFSTLI 608

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
           + L K G    A   LE  +  G+ P    Y  L++GL  + D  +   +L  M +K  V
Sbjct: 609 NRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSKGDTTEIINLLHQMAAKGTV 668

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVI 286
              +I +  L  LC      +++ +L    Q   +   I+ N ++
Sbjct: 669 LDRKIVSTILTCLCHSIQEVDVMELLPTFFQGTSEGASISCNELL 713



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 132/294 (44%), Gaps = 11/294 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHV--PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHC 58
           M  LC   +V EA KLF  M    +   PNV ++  LI G C+ G +  A K+  +M   
Sbjct: 396 MKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKK 455

Query: 59  GVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSV--NNAAFANLVDSLCR 116
           G   N +TY++L+ G L+   ++ A     +LW   K+  DL    N+  ++ L+D  C+
Sbjct: 456 GSCGNLVTYNMLLGGCLKAGKIKEA----MELW---KQVLDLGFVPNSFTYSILIDGFCK 508

Query: 117 EGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVS 176
              +N    +  +M         F    ++ SLC+ G    A  +   M      P ++S
Sbjct: 509 MRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIIS 568

Query: 177 YNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFML 236
           +N+++ G  K G      +L  + ++ G  P   T+  L+  L    +L++A+  L+ M+
Sbjct: 569 FNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFSTLINRLSKLGELDEAKSALERMV 628

Query: 237 SKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFC 290
           +        + +  L+ L    + TE++N+L  M       D   ++T++   C
Sbjct: 629 ASGFTPDALVYDSLLKGLSSKGDTTEIINLLHQMAAKGTVLDRKIVSTILTCLC 682



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 76/169 (44%)

Query: 338 LYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLC 397
           +Y+ M      P   + +A++      ++ +    V   +L  G   +     IV+ GLC
Sbjct: 96  VYRRMTHVDVLPSFGSLSALIECFADAQKPQLGFGVVGLVLKRGFTVNVFIMNIVLKGLC 155

Query: 398 ESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIV 457
            +  + EA     ++   S   D   Y  +I GLC++ K+ EAV  L E+  +G  PN V
Sbjct: 156 RNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSV 215

Query: 458 CYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
               ++DG CK     EA ++L  M+K G + D V +  L     N GN
Sbjct: 216 TCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGN 264


>gi|15242446|ref|NP_198787.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170916|sp|Q9FIX3.1|PP407_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g39710; AltName: Full=Protein EMBRYO DEFECTIVE 2745
 gi|10177971|dbj|BAB11377.1| unnamed protein product [Arabidopsis thaliana]
 gi|332007083|gb|AED94466.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 747

 Score =  219 bits (558), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 146/511 (28%), Positives = 242/511 (47%), Gaps = 60/511 (11%)

Query: 13  AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVR 72
           A  +F +M      PNV +Y  LI G+C  G +DVA  +FD+M   G LPN +TY+ L+ 
Sbjct: 189 AENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLID 248

Query: 73  GVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQ 132
           G  + R ++      FKL   M  +  L  N  ++  +++ LCREG + EV  +  +M +
Sbjct: 249 GYCKLRKIDDG----FKLLRSMALK-GLEPNLISYNVVINGLCREGRMKEVSFVLTEMNR 303

Query: 133 GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMR 192
                +E     +I   C+ G  H A  +   M + GLTPS+++Y S++H +CK G   R
Sbjct: 304 RGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNR 363

Query: 193 AYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLR 252
           A + L++    G  P+E TY  LV+G   +  + +A +VL+ M                 
Sbjct: 364 AMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMN---------------- 407

Query: 253 ALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCA 312
                                   P V+T N +ING C  G++E+A+ VL DM   K  +
Sbjct: 408 -------------------DNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDM-KEKGLS 447

Query: 313 PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKE 372
           PD V+++T++ G      + EAL +  + M ++G  P  +TY+++++G    RR +EA +
Sbjct: 448 PDVVSYSTVLSGFCRSYDVDEALRVKRE-MVEKGIKPDTITYSSLIQGFCEQRRTKEACD 506

Query: 373 VFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLC 432
           ++  ML +G+  D  TY  +I+  C    L++A +  +++V    + D   Y+ +I GL 
Sbjct: 507 LYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLN 566

Query: 433 RSGKIHEAVHFLYELVDSGVTPNIVCYNVVID---------------GACKLSMKREAYQ 477
           +  +  EA   L +L      P+ V Y+ +I+               G C   M  EA Q
Sbjct: 567 KQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQ 626

Query: 478 ILREMRKNGLNPDAVTWRILDKLHGN-RGND 507
           +   M      PD   + I+  +HG+ R  D
Sbjct: 627 VFESMLGKNHKPDGTAYNIM--IHGHCRAGD 655



 Score =  214 bits (546), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 142/505 (28%), Positives = 241/505 (47%), Gaps = 57/505 (11%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C    +  A  LF  M+++G +PNVV+Y TLI GYC+  ++D  +K+   M   G+ PN
Sbjct: 215 FCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPN 274

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            ++Y+V++ G                                        LCREG + EV
Sbjct: 275 LISYNVVING----------------------------------------LCREGRMKEV 294

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             +  +M +     +E     +I   C+ G  H A  +   M + GLTPS+++Y S++H 
Sbjct: 295 SFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHS 354

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           +CK G   RA + L++    G  P+E TY  LV+G   +  + +A +VL+ M        
Sbjct: 355 MCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPS 414

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               N  +   C+     + + VL  M +    PDV++ +TV++GFC+   ++EAL+V  
Sbjct: 415 VVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKR 474

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           +MV  K   PD +T++++I G     R +EA + LY+ M + G  P   TY A++     
Sbjct: 475 EMVE-KGIKPDTITYSSLIQGFCEQRRTKEACD-LYEEMLRVGLPPDEFTYTALINAYCM 532

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
              +E+A ++ N M+  GV+ D  TY+++I+GL + ++  EAKR    + +  ++  +  
Sbjct: 533 EGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVT 592

Query: 424 Y---------------AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACK 468
           Y                ++IKG C  G + EA      ++     P+   YN++I G C+
Sbjct: 593 YHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCR 652

Query: 469 LSMKREAYQILREMRKNGLNPDAVT 493
               R+AY + +EM K+G     VT
Sbjct: 653 AGDIRKAYTLYKEMVKSGFLLHTVT 677



 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 138/492 (28%), Positives = 242/492 (49%), Gaps = 43/492 (8%)

Query: 7   LSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGE-MDVAYKVFDEMRHCGVLPNSL 65
           LS + +A  +    ++ G +P V+SY  ++    R+   +  A  VF EM    V PN  
Sbjct: 147 LSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVF 206

Query: 66  TYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFR 125
           TY++L+RG     +++ A      L+++M+ +  L  N   +  L+D  C+   +++ F+
Sbjct: 207 TYNILIRGFCFAGNIDVA----LTLFDKMETKGCLP-NVVTYNTLIDGYCKLRKIDDGFK 261

Query: 126 IAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLC 185
           +   M          +   +I+ LCR GR    S V+  M +RG +   V+YN+++ G C
Sbjct: 262 LLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYC 321

Query: 186 KHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTR 245
           K G   +A  +  E ++ G  PS  TY  L+  +C   ++ +A + L         D+ R
Sbjct: 322 KEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFL---------DQMR 372

Query: 246 ICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM 305
           +     R LC                     P+  T  T+++GF + G + EA +VL +M
Sbjct: 373 V-----RGLC---------------------PNERTYTTLVDGFSQKGYMNEAYRVLREM 406

Query: 306 VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLR 365
               F +P  VT+  +I G    G++++A+ +L + M ++G SP +V+Y+ VL G  R  
Sbjct: 407 NDNGF-SPSVVTYNALINGHCVTGKMEDAIAVL-EDMKEKGLSPDVVSYSTVLSGFCRSY 464

Query: 366 RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYA 425
            V+EA  V   M+  G+  D+ TY+ +I G CE  +  EA   +++++      D + Y 
Sbjct: 465 DVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYT 524

Query: 426 AMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN 485
           A+I   C  G + +A+    E+V+ GV P++V Y+V+I+G  K S  REA ++L ++   
Sbjct: 525 ALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYE 584

Query: 486 GLNPDAVTWRIL 497
              P  VT+  L
Sbjct: 585 ESVPSDVTYHTL 596



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 129/508 (25%), Positives = 235/508 (46%), Gaps = 22/508 (4%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C L ++ +  KL   M  +G  PN++SY  +I+G CR G M     V  EM   G 
Sbjct: 247 IDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGY 306

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             + +TY+ L++G  +  +  +A V+  ++         L+ +   + +L+ S+C+ G +
Sbjct: 307 SLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRH-----GLTPSVITYTSLIHSMCKAGNM 361

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           N      + M        E     ++D   + G  + A RV+  M   G +PS+V+YN++
Sbjct: 362 NRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNAL 421

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++G C  G    A  +LE+  + G  P   +Y  ++ G C   D+++A +V + M+ K  
Sbjct: 422 INGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGI 481

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
              T   +  ++  C  +   E  ++   ML+    PD  T   +IN +C  G +E+AL+
Sbjct: 482 KPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQ 541

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN----- 355
           + N+MV  K   PD VT++ +I GL    R +EA  LL ++  +    P  VTY+     
Sbjct: 542 LHNEMVE-KGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESV-PSDVTYHTLIEN 599

Query: 356 ----------AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA 405
                     ++++G      + EA +VF  MLG     D T Y I+I G C +  + +A
Sbjct: 600 CSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKA 659

Query: 406 KRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDG 465
              + ++V    +       A++K L + GK++E    +  ++ S          V+++ 
Sbjct: 660 YTLYKEMVKSGFLLHTVTVIALVKALHKEGKVNELNSVIVHVLRSCELSEAEQAKVLVEI 719

Query: 466 ACKLSMKREAYQILREMRKNGLNPDAVT 493
             +         +L EM K+G  P+ ++
Sbjct: 720 NHREGNMDVVLDVLAEMAKDGFLPNGIS 747



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 99/198 (50%), Gaps = 2/198 (1%)

Query: 310 FCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR-VE 368
            C   +  F  ++     +  I +AL++++ +    G+ PG+++YNAVL    R +R + 
Sbjct: 129 LCYSTSSVFDLVVKSYSRLSLIDKALSIVH-LAQAHGFMPGVLSYNAVLDATIRSKRNIS 187

Query: 369 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI 428
            A+ VF  ML   V  +  TY I+I G C +  +D A   +D +     + +   Y  +I
Sbjct: 188 FAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLI 247

Query: 429 KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLN 488
            G C+  KI +    L  +   G+ PN++ YNVVI+G C+    +E   +L EM + G +
Sbjct: 248 DGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYS 307

Query: 489 PDAVTWRILDKLHGNRGN 506
            D VT+  L K +   GN
Sbjct: 308 LDEVTYNTLIKGYCKEGN 325


>gi|302822936|ref|XP_002993123.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
 gi|300139014|gb|EFJ05763.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
          Length = 569

 Score =  219 bits (558), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 142/492 (28%), Positives = 239/492 (48%), Gaps = 55/492 (11%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC    + EA  L  DMKSRG  P  + +  +I G CR G +  A  V+ +M      P+
Sbjct: 90  LCKARLLDEAMGLLLDMKSRGMNPGTLLHNVVIGGLCRAGRLRHALGVYRQMNDAHP-PD 148

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            LTY+ LV G+ +   +  A     ++ + M     +  +N     +V SLC    V++ 
Sbjct: 149 FLTYTKLVHGLSKAGRLRDA----VQVLQEMVSARHVP-DNTTLTVVVQSLCLGDRVDDA 203

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGR-NHGASRVVYVMRKRGLTPSLVSYNSIVH 182
             + E+M              ++D LC+  R +   + ++  + +RG TP +V+Y++++ 
Sbjct: 204 RELVEEMLHRGMAANAITYSALVDGLCKCERLDEAVALLLGEVTRRGFTPDIVTYSTVID 263

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           GLCK G    A  + EE       P+  TY  L+ G C   D+++A ++L  M+      
Sbjct: 264 GLCKAGRLRDAVDIFEE---MSCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDN--- 317

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
                                           C PDVIT  T+++ FCKMGR+++A ++ 
Sbjct: 318 --------------------------------CAPDVITYTTLMSAFCKMGRLDDAYELF 345

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
             MVA K  +PD VTFT+++ GL   GR+++AL LL ++  +RG  P I TYN V+ G  
Sbjct: 346 QQMVANKL-SPDVVTFTSLVDGLCGEGRMEDALELLEEIT-RRGCPPTIYTYNCVVDGYC 403

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI-----VWPSN 417
           +  +V +A+E+       G V ++ TY I++ G C + + D+A ++ D +       P++
Sbjct: 404 KSNQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTS 463

Query: 418 IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQ 477
           +    +YA ++  LCR G+  +AV F  E++  G  P    +  V+   CK    ++A++
Sbjct: 464 VA---MYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHE 520

Query: 478 ILREMRKNGLNP 489
           +L EM K G  P
Sbjct: 521 LLEEMIKYGHTP 532



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 130/498 (26%), Positives = 231/498 (46%), Gaps = 56/498 (11%)

Query: 3   QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           +LC       A  LF  M   G V N  +Y  LIH  C+   +D A  +  +M+  G+ P
Sbjct: 55  ELCDARDTTTAMALFDKMAELGAV-NHTTYYNLIHPLCKARLLDEAMGLLLDMKSRGMNP 113

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
            +L ++V++ G+ R   +  A      ++ +M +      +   +  LV  L + G + +
Sbjct: 114 GTLLHNVVIGGLCRAGRLRHA----LGVYRQMNDAH--PPDFLTYTKLVHGLSKAGRLRD 167

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
             ++ ++M   + V +      ++ SLC   R   A  +V  M  RG+  + ++Y+++V 
Sbjct: 168 AVQVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVD 227

Query: 183 GLCKHGGCMRAYQ----LLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
           GLCK   C R  +    LL E  + G+ P   TY  +++GLC    L  A  + + M   
Sbjct: 228 GLCK---CERLDEAVALLLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEM--- 281

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
                                               C P  IT N++I G+C+ G ++EA
Sbjct: 282 -----------------------------------SCAPTAITYNSLIGGYCRAGDMDEA 306

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
           +++L  MV    CAPD +T+TT++     +GR+ +A  L  Q++  +  SP +VT+ +++
Sbjct: 307 IRLLGKMVDDN-CAPDVITYTTLMSAFCKMGRLDDAYELFQQMVANK-LSPDVVTFTSLV 364

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
            GL    R+E+A E+   +   G      TY  V+DG C+SNQ+ +A+    D      +
Sbjct: 365 DGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKSNQVRKAEELVADFRSRGFV 424

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYEL-VDSGVTP-NIVCYNVVIDGACKLSMKREAY 476
            +   Y  ++ G CR+G+  +A+ +L +L  + G  P ++  Y +++D  C+     +A 
Sbjct: 425 PNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAV 484

Query: 477 QILREMRKNGLNPDAVTW 494
           Q   EM + G  P A T+
Sbjct: 485 QFYEEMIQRGYVPAAATF 502



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 116/447 (25%), Positives = 211/447 (47%), Gaps = 46/447 (10%)

Query: 51  VFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANL 110
           + DE+R  G+ P+ +  + ++  +   RD   A  L  K+ E        +VN+  + NL
Sbjct: 33  LLDEIRDRGLSPDPVELNTILAELCDARDTTTAMALFDKMAELG------AVNHTTYYNL 86

Query: 111 VDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGL 170
           +  LC+   ++E                  A G ++D                 M+ RG+
Sbjct: 87  IHPLCKARLLDE------------------AMGLLLD-----------------MKSRGM 111

Query: 171 TPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARK 230
            P  + +N ++ GLC+ G    A  +  + +   + P   TY  LV GL     L  A +
Sbjct: 112 NPGTLLHNVVIGGLCRAGRLRHALGVYRQ-MNDAHPPDFLTYTKLVHGLSKAGRLRDAVQ 170

Query: 231 VLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFC 290
           VLQ M+S + V       + +++LCL     +   ++  ML      + IT + +++G C
Sbjct: 171 VLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLC 230

Query: 291 KMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG 350
           K  R++EA+ +L   V  +   PD VT++T+I GL   GR+++A+++  ++      +P 
Sbjct: 231 KCERLDEAVALLLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEM----SCAPT 286

Query: 351 IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD 410
            +TYN+++ G  R   ++EA  +   M+      D  TY  ++   C+  +LD+A   + 
Sbjct: 287 AITYNSLIGGYCRAGDMDEAIRLLGKMVDDNCAPDVITYTTLMSAFCKMGRLDDAYELFQ 346

Query: 411 DIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLS 470
            +V      D   + +++ GLC  G++ +A+  L E+   G  P I  YN V+DG CK +
Sbjct: 347 QMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKSN 406

Query: 471 MKREAYQILREMRKNGLNPDAVTWRIL 497
             R+A +++ + R  G  P+ VT+ IL
Sbjct: 407 QVRKAEELVADFRSRGFVPNTVTYNIL 433



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 100/375 (26%), Positives = 178/375 (47%), Gaps = 15/375 (4%)

Query: 3   QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVF-DEMRHCGVL 61
            LC   RV +A +L  +M  RG   N ++Y+ L+ G C+   +D A  +   E+   G  
Sbjct: 193 SLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAVALLLGEVTRRGFT 252

Query: 62  PNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVN 121
           P+ +TYS ++ G+ +   + R  V +F       EE   +     + +L+   CR G ++
Sbjct: 253 PDIVTYSTVIDGLCKAGRL-RDAVDIF-------EEMSCAPTAITYNSLIGGYCRAGDMD 304

Query: 122 EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
           E  R+   M       +      ++ + C+ GR   A  +   M    L+P +V++ S+V
Sbjct: 305 EAIRLLGKMVDDNCAPDVITYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLV 364

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
            GLC  G    A +LLEE  + G  P+ +TY  +V+G C  + + KA +++    S+  V
Sbjct: 365 DGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKSNQVRKAEELVADFRSRGFV 424

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQ---CQPDVITLNTVINGFCKMGRIEEA 298
             T   NI +   C      + L  L   L ++   C   V     +++  C+ GR ++A
Sbjct: 425 PNTVTYNILVAGCCRAGRTDQALQYL-DQLNSEGGPCPTSVAMYAIILDALCRDGRTDDA 483

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
           ++   +M+   +  P A TF T++F L    + Q+A  LL + M + G++PG  T +AV+
Sbjct: 484 VQFYEEMIQRGY-VPAAATFATVVFALCKAHQPQQAHELLEE-MIKYGHTPGPGTCDAVV 541

Query: 359 RGLFRLRRVEEAKEV 373
               R   +++A E+
Sbjct: 542 SAYCRAGMIQKADEL 556



 Score = 45.8 bits (107), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 45/90 (50%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   R  +A + + +M  RG+VP   ++ T++   C+  +   A+++ +EM   G 
Sbjct: 471 LDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHELLEEMIKYGH 530

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKL 90
            P   T   +V    R   +++A+ L  +L
Sbjct: 531 TPGPGTCDAVVSAYCRAGMIQKADELASEL 560


>gi|6630464|gb|AAF19552.1|AC007190_20 F23N19.4 [Arabidopsis thaliana]
          Length = 1244

 Score =  219 bits (558), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 136/494 (27%), Positives = 245/494 (49%), Gaps = 42/494 (8%)

Query: 4    LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
             C  S++  A  +   M   G+ PN+V+ ++L++GYC +  +  A  + D+M   G  PN
Sbjct: 740  FCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPN 799

Query: 64   SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            ++T++ L+ G+        A  L+ ++  +   + DL      +  +V+ LC+ G  +  
Sbjct: 800  TVTFNTLIHGLFLHNKASEAMALIDRMVAK-GCQPDL----VTYGVVVNGLCKRGDTDLA 854

Query: 124  FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            F +   M QGK          +ID LC+      A  +   M  +G+ P++V+Y+S++  
Sbjct: 855  FNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISC 914

Query: 184  LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            LC +G    A +LL + I+    P   T+  L++    E  L +A K+   M+ K+ +D 
Sbjct: 915  LCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMV-KRSID- 972

Query: 244  TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                                             P ++T +++INGFC   R++EA ++  
Sbjct: 973  ---------------------------------PSIVTYSSLINGFCMHDRLDEAKQMFE 999

Query: 304  DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
             MV+ K C PD VT+ T+I G     R++E + + ++ M QRG     VTYN +++GLF+
Sbjct: 1000 FMVS-KHCFPDVVTYNTLIKGFCKYKRVEEGMEV-FREMSQRGLVGNTVTYNILIQGLFQ 1057

Query: 364  LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
                + A+E+F  M+  GV  +  TY  ++DGLC++ +L++A   ++ +         Y 
Sbjct: 1058 AGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYT 1117

Query: 424  YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
            Y  MI+G+C++GK+ +       L   GV P++V YN +I G C+   K EA  + +EM+
Sbjct: 1118 YNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMK 1177

Query: 484  KNGLNPDAVTWRIL 497
            ++G  P++  +  L
Sbjct: 1178 EDGTLPNSGCYNTL 1191



 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 127/494 (25%), Positives = 229/494 (46%), Gaps = 44/494 (8%)

Query: 6    GLS--RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            GLS  ++ +A  LF +M      P+++ ++ L+    +  + DV   + ++M++ G+  N
Sbjct: 670  GLSELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHN 729

Query: 64   SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
              TYS+L+    R   +  A  ++ K+                         + GY   +
Sbjct: 730  HYTYSILINCFCRRSQLPLALAVLGKMM------------------------KLGYEPNI 765

Query: 124  FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
              ++                 +++  C S R   A  +V  M   G  P+ V++N+++HG
Sbjct: 766  VTLSS----------------LLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHG 809

Query: 184  LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            L  H     A  L++  +  G  P   TY V+V GLC   D + A  +L  M   K    
Sbjct: 810  LFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPG 869

Query: 244  TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
              I N  +  LC  K+  + LN+   M     +P+V+T +++I+  C  GR  +A ++L+
Sbjct: 870  VLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLS 929

Query: 304  DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            DM+  K   PD  TF+ +I   +  G++ EA   LY  M +R   P IVTY++++ G   
Sbjct: 930  DMIERKI-NPDVFTFSALIDAFVKEGKLVEA-EKLYDEMVKRSIDPSIVTYSSLINGFCM 987

Query: 364  LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
              R++EAK++F  M+      D  TY  +I G C+  +++E    + ++     + +   
Sbjct: 988  HDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVT 1047

Query: 424  YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
            Y  +I+GL ++G    A     E+V  GV PNI+ YN ++DG CK     +A  +   ++
Sbjct: 1048 YNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQ 1107

Query: 484  KNGLNPDAVTWRIL 497
            ++ + P   T+ I+
Sbjct: 1108 RSKMEPTIYTYNIM 1121



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 144/551 (26%), Positives = 258/551 (46%), Gaps = 63/551 (11%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   R+ EA+++F  M S+G + +VVSY TLI+G+C+   ++   K+F EM   G+
Sbjct: 405 INGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGL 464

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           + N++TY+ L++G  +  DV++A    F   +      D+   N     L+  LC  G +
Sbjct: 465 VSNTVTYNTLIQGFFQAGDVDKAQEF-FSQMDFFGISPDIWTYNI----LLGGLCDNGEL 519

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +   I EDM + +   +      +I  +C++G+   A  +   +  +GL P +V+Y ++
Sbjct: 520 EKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTM 579

Query: 181 VHGLCKHG---------------GCMR------------AYQLLEEGIQFGYLPSEHTYK 213
           + GLC  G               G M+            + +L+++ +  GY PS    K
Sbjct: 580 MSGLCTKGLLHEVEALYTKMKQEGLMKNDCTLSDGDITLSAELIKKMLSCGYAPS--LLK 637

Query: 214 VLVEGLC-----------GESDLEKARKVLQFMLSKKDVDRTRIC---NIYLRALCLIKN 259
            +  G+C           G++  +   K+ +  LS+  +D         +  R    I  
Sbjct: 638 DIKSGVCKKALSLLRAFSGKTSYDYREKLSRNGLSELKLDDAVALFGEMVKSRPFPSIIE 697

Query: 260 PTELLNVLVFM--------LQTQCQPDVI-----TLNTVINGFCKMGRIEEALKVLNDMV 306
            ++LL+ +  M        L  Q Q   I     T + +IN FC+  ++  AL VL  M+
Sbjct: 698 FSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMM 757

Query: 307 AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 366
              +  P+ VT ++++ G  +  RI EA+ L+ Q M   GY P  VT+N ++ GLF   +
Sbjct: 758 KLGY-EPNIVTLSSLLNGYCHSKRISEAVALVDQ-MFVTGYQPNTVTFNTLIHGLFLHNK 815

Query: 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAA 426
             EA  + + M+  G   D  TY +V++GLC+    D A    + +          +Y  
Sbjct: 816 ASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNT 875

Query: 427 MIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG 486
           +I GLC+   + +A++   E+   G+ PN+V Y+ +I   C      +A ++L +M +  
Sbjct: 876 IIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERK 935

Query: 487 LNPDAVTWRIL 497
           +NPD  T+  L
Sbjct: 936 INPDVFTFSAL 946



 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 143/582 (24%), Positives = 252/582 (43%), Gaps = 86/582 (14%)

Query: 1    MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
            ++  C   RV +  KLF +M  RG V N V+Y TLI G+ + G++D A + F +M   G+
Sbjct: 440  INGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGI 499

Query: 61   LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERM-------------------KEEEDLS 101
             P+  TY++L+ G+    ++E+A V+   + +R                    K EE  S
Sbjct: 500  SPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWS 559

Query: 102  V-----------NNAAFANLVDSLCREGYVNEVFRIAEDMPQ------------------ 132
            +           +   +  ++  LC +G ++EV  +   M Q                  
Sbjct: 560  LFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKNDCTLSDGDITLS 619

Query: 133  GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMR---------------KRGLT------ 171
             + + +  +CG+   SL +  ++    + + ++R               + GL+      
Sbjct: 620  AELIKKMLSCGYA-PSLLKDIKSGVCKKALSLLRAFSGKTSYDYREKLSRNGLSELKLDD 678

Query: 172  --------------PSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVE 217
                          PS++ ++ ++  + K         L E+    G   + +TY +L+ 
Sbjct: 679  AVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILIN 738

Query: 218  GLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQP 277
              C  S L  A  VL  M+           +  L   C  K  +E + ++  M  T  QP
Sbjct: 739  CFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQP 798

Query: 278  DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNL 337
            + +T NT+I+G     +  EA+ +++ MVA K C PD VT+  ++ GL   G    A NL
Sbjct: 799  NTVTFNTLIHGLFLHNKASEAMALIDRMVA-KGCQPDLVTYGVVVNGLCKRGDTDLAFNL 857

Query: 338  LYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLC 397
            L + M Q    PG++ YN ++ GL + + +++A  +F  M   G+  +  TY+ +I  LC
Sbjct: 858  LNK-MEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLC 916

Query: 398  ESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIV 457
               +  +A R   D++      D + ++A+I    + GK+ EA     E+V   + P+IV
Sbjct: 917  NYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIV 976

Query: 458  CYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
             Y+ +I+G C      EA Q+   M      PD VT+  L K
Sbjct: 977  TYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIK 1018



 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 132/554 (23%), Positives = 240/554 (43%), Gaps = 96/554 (17%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   RV +A   F +++ +G  PNVV+YT L++G C +     A ++  +M    +
Sbjct: 300 IDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKI 359

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +TYS L+   ++   V  A  L F+   RM  + D+      +++L++ LC    +
Sbjct: 360 TPNVITYSALLDAFVKNGKVLEAKEL-FEEMVRMSIDPDI----VTYSSLINGLCLHDRI 414

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E  ++ + M     + +  +   +I+  C++ R     ++   M +RGL  + V+YN++
Sbjct: 415 DEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTL 474

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G  + G   +A +   +   FG  P   TY +L+ GLC   +LEKA  + + M  K++
Sbjct: 475 IQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDM-QKRE 533

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           +D                                   D++T  TVI G CK G++EEA  
Sbjct: 534 MDL----------------------------------DIVTYTTVIRGMCKTGKVEEAWS 559

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG-------YSPGIVT 353
           +   + + K   PD VT+TT++ GL   G + E +  LY  M Q G        S G +T
Sbjct: 560 LFCSL-SLKGLKPDIVTYTTMMSGLCTKGLLHE-VEALYTKMKQEGLMKNDCTLSDGDIT 617

Query: 354 YNAVL-----------------------RGLFRLR----------------------RVE 368
            +A L                       + L  LR                      +++
Sbjct: 618 LSAELIKKMLSCGYAPSLLKDIKSGVCKKALSLLRAFSGKTSYDYREKLSRNGLSELKLD 677

Query: 369 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI 428
           +A  +F  M+          ++ ++  + + N+ D      + +      H++Y Y+ +I
Sbjct: 678 DAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILI 737

Query: 429 KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLN 488
              CR  ++  A+  L +++  G  PNIV  + +++G C      EA  ++ +M   G  
Sbjct: 738 NCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQ 797

Query: 489 PDAVTWRILDKLHG 502
           P+ VT+  L  +HG
Sbjct: 798 PNTVTFNTL--IHG 809



 Score =  161 bits (408), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 114/448 (25%), Positives = 213/448 (47%), Gaps = 9/448 (2%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           ++ +A  LF DM      P++V +  L+    +  + DV   +  +M   G+  +  T++
Sbjct: 168 KLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFN 227

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
           +++        V  A  ++ K+ +   E + +++      +LV+  CR   V++   + +
Sbjct: 228 IVINCFCCCFQVSLALSILGKMLKLGYEPDRVTI-----GSLVNGFCRRNRVSDAVSLVD 282

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
            M +     +  A   +IDSLC++ R + A      + ++G+ P++V+Y ++V+GLC   
Sbjct: 283 KMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSS 342

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK-DVDRTRIC 247
               A +LL + I+    P+  TY  L++       + +A+++ + M+    D D     
Sbjct: 343 RWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYS 402

Query: 248 NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA 307
           ++ +  LCL     E   +   M+   C  DV++ NT+INGFCK  R+E+ +K+  +M +
Sbjct: 403 SL-INGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREM-S 460

Query: 308 GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRV 367
            +    + VT+ T+I G    G + +A     Q M   G SP I TYN +L GL     +
Sbjct: 461 QRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQ-MDFFGISPDIWTYNILLGGLCDNGEL 519

Query: 368 EEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAM 427
           E+A  +F  M    +  D  TY  VI G+C++ +++EA   +  +       D   Y  M
Sbjct: 520 EKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTM 579

Query: 428 IKGLCRSGKIHEAVHFLYELVDSGVTPN 455
           + GLC  G +HE      ++   G+  N
Sbjct: 580 MSGLCTKGLLHEVEALYTKMKQEGLMKN 607



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 106/408 (25%), Positives = 191/408 (46%), Gaps = 12/408 (2%)

Query: 4    LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            LC       A  L   M+     P V+ Y T+I G C+   MD A  +F EM   G+ PN
Sbjct: 845  LCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPN 904

Query: 64   SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             +TYS L+  +        A+ L+  + ER      ++ +   F+ L+D+  +EG + E 
Sbjct: 905  VVTYSSLISCLCNYGRWSDASRLLSDMIER-----KINPDVFTFSALIDAFVKEGKLVEA 959

Query: 124  FRIAEDMPQGKSVNEEFAC-GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
             ++ ++M + +S++        +I+  C   R   A ++   M  +   P +V+YN+++ 
Sbjct: 960  EKLYDEMVK-RSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIK 1018

Query: 183  GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
            G CK+       ++  E  Q G + +  TY +L++GL    D + A+++ + M+S     
Sbjct: 1019 GFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPP 1078

Query: 243  RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
                 N  L  LC      + + V  ++ +++ +P + T N +I G CK G++E+   + 
Sbjct: 1079 NIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLF 1138

Query: 303  NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
             ++ + K   PD V + T+I G    G  +EA + L++ M + G  P    YN ++R   
Sbjct: 1139 CNL-SLKGVKPDVVAYNTMISGFCRKGSKEEA-DALFKEMKEDGTLPNSGCYNTLIRARL 1196

Query: 363  RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD 410
            R    E + E+   M   G   D++T  +V + L    +LD  K F D
Sbjct: 1197 RDGDREASAELIKEMRSCGFAGDASTIGLVTNML-HDGRLD--KSFLD 1241



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 80/330 (24%), Positives = 165/330 (50%), Gaps = 37/330 (11%)

Query: 165 MRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESD 224
           M K G  P  V+  S+V+G C+      A  L+++ ++ GY P    Y  +++ LC    
Sbjct: 249 MLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLC---- 304

Query: 225 LEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNT 284
             K ++V       K+++R  I                             +P+V+T   
Sbjct: 305 --KTKRVNDAFDFFKEIERKGI-----------------------------RPNVVTYTA 333

Query: 285 VINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ 344
           ++NG C   R  +A ++L+DM+  K   P+ +T++ ++   +  G++ EA  L ++ M +
Sbjct: 334 LVNGLCNSSRWSDAARLLSDMIKKKI-TPNVITYSALLDAFVKNGKVLEAKEL-FEEMVR 391

Query: 345 RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 404
               P IVTY++++ GL    R++EA ++F+ M+  G +AD  +Y  +I+G C++ ++++
Sbjct: 392 MSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVED 451

Query: 405 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
             + + ++     + +   Y  +I+G  ++G + +A  F  ++   G++P+I  YN+++ 
Sbjct: 452 GMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLG 511

Query: 465 GACKLSMKREAYQILREMRKNGLNPDAVTW 494
           G C      +A  I  +M+K  ++ D VT+
Sbjct: 512 GLCDNGELEKALVIFEDMQKREMDLDIVTY 541



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 120/550 (21%), Positives = 233/550 (42%), Gaps = 67/550 (12%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C   +V  A  +   M   G+ P+ V+  +L++G+CR   +  A  + D+M   G  P+
Sbjct: 233 FCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPD 292

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            + Y+ ++  + +T+ V  A    F  ++ + E + +  N   +  LV+ LC     ++ 
Sbjct: 293 IVAYNAIIDSLCKTKRVNDA----FDFFKEI-ERKGIRPNVVTYTALVNGLCNSSRWSDA 347

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            R+  DM + K          ++D+  ++G+   A  +   M +  + P +V+Y+S+++G
Sbjct: 348 ARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLING 407

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LC H     A Q+ +  +  G L    +Y  L+ G C    +E   K+ + M  +  V  
Sbjct: 408 LCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSN 467

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
           T   N  ++      +  +       M      PD+ T N ++ G C  G +E+AL +  
Sbjct: 468 TVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFE 527

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           DM   +    D VT+TT+I G+   G+++EA + L+  +  +G  P IVTY  ++ GL  
Sbjct: 528 DMQKREM-DLDIVTYTTVIRGMCKTGKVEEAWS-LFCSLSLKGLKPDIVTYTTMMSGLCT 585

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTT--------------------YAI-----VIDGLCE 398
              + E + ++  M   G++ +  T                    YA      +  G+C+
Sbjct: 586 KGLLHEVEALYTKMKQEGLMKNDCTLSDGDITLSAELIKKMLSCGYAPSLLKDIKSGVCK 645

Query: 399 SN---------------------------QLDEAKRFWDDIV----WPSNIHDNYVYAAM 427
                                        +LD+A   + ++V    +PS I     ++ +
Sbjct: 646 KALSLLRAFSGKTSYDYREKLSRNGLSELKLDDAVALFGEMVKSRPFPSIIE----FSKL 701

Query: 428 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
           +  + +  K    +    ++ + G+  N   Y+++I+  C+ S    A  +L +M K G 
Sbjct: 702 LSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGY 761

Query: 488 NPDAVTWRIL 497
            P+ VT   L
Sbjct: 762 EPNIVTLSSL 771



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 84/327 (25%), Positives = 164/327 (50%), Gaps = 4/327 (1%)

Query: 172 PSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKV 231
           PS+V +N ++  + K         L ++    G     +T+ +++   C    +  A  +
Sbjct: 186 PSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSI 245

Query: 232 LQFMLS-KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFC 290
           L  ML    + DR  I ++ +   C     ++ ++++  M++   +PD++  N +I+  C
Sbjct: 246 LGKMLKLGYEPDRVTIGSL-VNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLC 304

Query: 291 KMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG 350
           K  R+ +A     + +  K   P+ VT+T ++ GL N  R  +A  LL   M ++  +P 
Sbjct: 305 KTKRVNDAFDFFKE-IERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSD-MIKKKITPN 362

Query: 351 IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD 410
           ++TY+A+L    +  +V EAKE+F  M+ + +  D  TY+ +I+GLC  +++DEA + +D
Sbjct: 363 VITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFD 422

Query: 411 DIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLS 470
            +V    + D   Y  +I G C++ ++ + +    E+   G+  N V YN +I G  +  
Sbjct: 423 LMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAG 482

Query: 471 MKREAYQILREMRKNGLNPDAVTWRIL 497
              +A +   +M   G++PD  T+ IL
Sbjct: 483 DVDKAQEFFSQMDFFGISPDIWTYNIL 509



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 51/87 (58%)

Query: 1    MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
            ++ +C   +V +   LF ++  +G  P+VV+Y T+I G+CR G  + A  +F EM+  G 
Sbjct: 1122 IEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGT 1181

Query: 61   LPNSLTYSVLVRGVLRTRDVERANVLM 87
            LPNS  Y+ L+R  LR  D E +  L+
Sbjct: 1182 LPNSGCYNTLIRARLRDGDREASAELI 1208


>gi|359479583|ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Vitis vinifera]
 gi|297735515|emb|CBI17955.3| unnamed protein product [Vitis vinifera]
          Length = 627

 Score =  219 bits (557), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 137/497 (27%), Positives = 245/497 (49%), Gaps = 13/497 (2%)

Query: 7   LSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLT 66
           + R  +   L+  M   G  P+ ++   LI+ YC   ++D    V  EM   G  PN++T
Sbjct: 105 IKRYFDVISLYKRMSLIGLAPDFITLNILINCYCNLNKVDFGLAVLGEMLRRGHSPNTVT 164

Query: 67  YSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRI 126
           ++ LV+G+     +  A  L+ K+  RM        N   +  L++ LC  G      ++
Sbjct: 165 FTSLVKGLCLGSRISEATGLLRKMV-RMGYRP----NVVTYGTLLNGLCMTGNTMLAVKL 219

Query: 127 AEDMPQGK-----SVNEEFAC-GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E+M  G      ++     C   +IDSLC+ G       +   M+ RG++P +V+Y+SI
Sbjct: 220 HEEMLNGNGGFGVTIKPNLVCYCTIIDSLCKDGLIDKGKELFLEMKGRGISPDVVAYSSI 279

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +HG+C  G    A  L  E +  G  P+  T+ VL++ LC    +E+A  +L+ M+ + +
Sbjct: 280 IHGMCHTGRWEGAKGLFNEMVDEGVHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGE 339

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
              T   N  +   CL     +  ++ V M     + D ++ N +ING+CK GR+ EA K
Sbjct: 340 SPDTFTYNTLIDGFCLEGRIDDARDLFVSMESKGIETDAVSYNVLINGYCKSGRMVEAKK 399

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +  +M+  K   P  +T+ T++ GL   G++++A NL  + M     +P   TYN +L G
Sbjct: 400 LYREMMC-KEIMPTVITYNTLLTGLFREGKVRDAWNLFGE-MKVHDLTPESCTYNILLDG 457

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L +   + EA E+F+ +           +  +IDGLC++ +++ A+  ++ +       +
Sbjct: 458 LCKNNHLSEAMELFHYLENHDFQPSIQIFNCLIDGLCKARKIEIARELFNRLSHEGLEPN 517

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              Y  MI GLC+SG++  A      + + G  PN+V +N ++ G C+    ++  ++L+
Sbjct: 518 VITYTVMIHGLCKSGQLENAKDLFLGMEEKGCAPNLVTFNTLMRGFCQNDEMQKVVELLQ 577

Query: 481 EMRKNGLNPDAVTWRIL 497
           EM +   +PDA T  I+
Sbjct: 578 EMAEKDFSPDASTISIV 594



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 108/372 (29%), Positives = 190/372 (51%), Gaps = 13/372 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    + +  +LF +MK RG  P+VV+Y+++IHG C TG  + A  +F+EM   GV
Sbjct: 245 IDSLCKDGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGV 304

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +T++VL+  + +   +E AN L+  + +R +  +  + N      L+D  C EG +
Sbjct: 305 HPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYN-----TLIDGFCLEGRI 359

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           ++   +   M       +  +   +I+  C+SGR   A ++   M  + + P++++YN++
Sbjct: 360 DDARDLFVSMESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREMMCKEIMPTVITYNTL 419

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GL + G    A+ L  E       P   TY +L++GLC  + L +A ++  ++ +   
Sbjct: 420 LTGLFREGKVRDAWNLFGEMKVHDLTPESCTYNILLDGLCKNNHLSEAMELFHYLENHDF 479

Query: 241 VDRTRICNIYLRALC---LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
               +I N  +  LC    I+   EL N L        +P+VIT   +I+G CK G++E 
Sbjct: 480 QPSIQIFNCLIDGLCKARKIEIARELFNRLS---HEGLEPNVITYTVMIHGLCKSGQLEN 536

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           A  +   M   K CAP+ VTF T++ G      +Q+ + LL Q M ++ +SP   T + V
Sbjct: 537 AKDLFLGM-EEKGCAPNLVTFNTLMRGFCQNDEMQKVVELL-QEMAEKDFSPDASTISIV 594

Query: 358 LRGLFRLRRVEE 369
           +  L +  +  E
Sbjct: 595 VDLLSKDEKYRE 606



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 87/277 (31%), Positives = 142/277 (51%), Gaps = 8/277 (2%)

Query: 227 KARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVI 286
           +A  V   ++  +        N  L A+  IK   +++++   M      PD ITLN +I
Sbjct: 75  EAFSVFNHLIDMQPTPPISSFNTLLGAVAKIKRYFDVISLYKRMSLIGLAPDFITLNILI 134

Query: 287 NGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
           N +C + +++  L VL +M+  +  +P+ VTFT+++ GL    RI EA  LL + M + G
Sbjct: 135 NCYCNLNKVDFGLAVLGEMLR-RGHSPNTVTFTSLVKGLCLGSRISEATGLLRK-MVRMG 192

Query: 347 YSPGIVTYNAVLRGLF----RLRRVEEAKEVFNCMLGIGVV--ADSTTYAIVIDGLCESN 400
           Y P +VTY  +L GL      +  V+  +E+ N   G GV    +   Y  +ID LC+  
Sbjct: 193 YRPNVVTYGTLLNGLCMTGNTMLAVKLHEEMLNGNGGFGVTIKPNLVCYCTIIDSLCKDG 252

Query: 401 QLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYN 460
            +D+ K  + ++       D   Y+++I G+C +G+   A     E+VD GV PN+V +N
Sbjct: 253 LIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVHPNVVTFN 312

Query: 461 VVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           V+ID  CK     EA  +L+ M + G +PD  T+  L
Sbjct: 313 VLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTL 349



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 88/351 (25%), Positives = 156/351 (44%), Gaps = 45/351 (12%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   ++ EA+ L   M  RG  P+  +Y TLI G+C  G +D A  +F  M   G+
Sbjct: 315 IDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRIDDARDLFVSMESKGI 374

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             ++++Y+VL+ G  ++  +  A     KL+  M  +E +      +  L+  L REG V
Sbjct: 375 ETDAVSYNVLINGYCKSGRMVEAK----KLYREMMCKEIMPTV-ITYNTLLTGLFREGKV 429

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            + + +  +M       E      ++D LC++     A  + + +      PS+  +N +
Sbjct: 430 RDAWNLFGEMKVHDLTPESCTYNILLDGLCKNNHLSEAMELFHYLENHDFQPSIQIFNCL 489

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GLCK      A +L       G  P+  TY V++ GLC    LE A+           
Sbjct: 490 IDGLCKARKIEIARELFNRLSHEGLEPNVITYTVMIHGLCKSGQLENAK----------- 538

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                   ++ + M +  C P+++T NT++ GFC+   +++ ++
Sbjct: 539 ------------------------DLFLGMEEKGCAPNLVTFNTLMRGFCQNDEMQKVVE 574

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ----RGY 347
           +L +M    F +PDA T + ++  L    + +E L+LL     Q    RGY
Sbjct: 575 LLQEMAEKDF-SPDASTISIVVDLLSKDEKYREYLHLLPTFPAQGQTGRGY 624


>gi|15221549|ref|NP_176454.1| RNA processing factor 2 [Arabidopsis thaliana]
 gi|193806496|sp|Q9SXD1.2|PPR91_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62670, mitochondrial; Flags: Precursor
 gi|332195871|gb|AEE33992.1| RNA processing factor 2 [Arabidopsis thaliana]
          Length = 630

 Score =  219 bits (557), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 136/494 (27%), Positives = 245/494 (49%), Gaps = 42/494 (8%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C  S++  A  +   M   G+ PN+V+ ++L++GYC +  +  A  + D+M   G  PN
Sbjct: 126 FCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPN 185

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           ++T++ L+ G+        A  L+ ++  +   + DL      +  +V+ LC+ G  +  
Sbjct: 186 TVTFNTLIHGLFLHNKASEAMALIDRMVAK-GCQPDL----VTYGVVVNGLCKRGDTDLA 240

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           F +   M QGK          +ID LC+      A  +   M  +G+ P++V+Y+S++  
Sbjct: 241 FNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISC 300

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LC +G    A +LL + I+    P   T+  L++    E  L +A K+   M+ K+ +D 
Sbjct: 301 LCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMV-KRSID- 358

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                                            P ++T +++INGFC   R++EA ++  
Sbjct: 359 ---------------------------------PSIVTYSSLINGFCMHDRLDEAKQMFE 385

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            MV+ K C PD VT+ T+I G     R++E + + ++ M QRG     VTYN +++GLF+
Sbjct: 386 FMVS-KHCFPDVVTYNTLIKGFCKYKRVEEGMEV-FREMSQRGLVGNTVTYNILIQGLFQ 443

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
               + A+E+F  M+  GV  +  TY  ++DGLC++ +L++A   ++ +         Y 
Sbjct: 444 AGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYT 503

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y  MI+G+C++GK+ +       L   GV P++V YN +I G C+   K EA  + +EM+
Sbjct: 504 YNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMK 563

Query: 484 KNGLNPDAVTWRIL 497
           ++G  P++  +  L
Sbjct: 564 EDGTLPNSGCYNTL 577



 Score =  205 bits (521), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 137/501 (27%), Positives = 234/501 (46%), Gaps = 43/501 (8%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C   R+ EA  L   M   G+ PN V++ TLIHG     +   A  + D M   G  P+ 
Sbjct: 162 CHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDL 221

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           +TY V+V G+ +  D +    L F L  +M E+  L      +  ++D LC+  ++++  
Sbjct: 222 VTYGVVVNGLCKRGDTD----LAFNLLNKM-EQGKLEPGVLIYNTIIDGLCKYKHMDDAL 276

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
            + ++M              +I  LC  GR   ASR++  M +R + P + ++++++   
Sbjct: 277 NLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAF 336

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
            K G  + A +L +E ++    PS  TY  L+ G C    L++A+++ +FM+SK      
Sbjct: 337 VKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSK------ 390

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
                                         C PDV+T NT+I GFCK  R+EE ++V  +
Sbjct: 391 -----------------------------HCFPDVVTYNTLIKGFCKYKRVEEGMEVFRE 421

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
           M + +    + VT+  +I GL   G    A   +++ M   G  P I+TYN +L GL + 
Sbjct: 422 M-SQRGLVGNTVTYNILIQGLFQAGDCDMAQE-IFKEMVSDGVPPNIMTYNTLLDGLCKN 479

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY 424
            ++E+A  VF  +    +     TY I+I+G+C++ ++++    + ++       D   Y
Sbjct: 480 GKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAY 539

Query: 425 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484
             MI G CR G   EA     E+ + G  PN  CYN +I    +   +  + ++++EMR 
Sbjct: 540 NTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRS 599

Query: 485 NGLNPDAVTWRIL-DKLHGNR 504
            G   DA T  ++ + LH  R
Sbjct: 600 CGFAGDASTIGLVTNMLHDGR 620



 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 127/494 (25%), Positives = 229/494 (46%), Gaps = 44/494 (8%)

Query: 6   GLS--RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           GLS  ++ +A  LF +M      P+++ ++ L+    +  + DV   + ++M++ G+  N
Sbjct: 56  GLSELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHN 115

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             TYS+L+    R   +  A  ++ K+                         + GY   +
Sbjct: 116 HYTYSILINCFCRRSQLPLALAVLGKMM------------------------KLGYEPNI 151

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             ++                 +++  C S R   A  +V  M   G  P+ V++N+++HG
Sbjct: 152 VTLSS----------------LLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHG 195

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           L  H     A  L++  +  G  P   TY V+V GLC   D + A  +L  M   K    
Sbjct: 196 LFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPG 255

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
             I N  +  LC  K+  + LN+   M     +P+V+T +++I+  C  GR  +A ++L+
Sbjct: 256 VLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLS 315

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           DM+  K   PD  TF+ +I   +  G++ EA   LY  M +R   P IVTY++++ G   
Sbjct: 316 DMIERKI-NPDVFTFSALIDAFVKEGKLVEA-EKLYDEMVKRSIDPSIVTYSSLINGFCM 373

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
             R++EAK++F  M+      D  TY  +I G C+  +++E    + ++     + +   
Sbjct: 374 HDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVT 433

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y  +I+GL ++G    A     E+V  GV PNI+ YN ++DG CK     +A  +   ++
Sbjct: 434 YNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQ 493

Query: 484 KNGLNPDAVTWRIL 497
           ++ + P   T+ I+
Sbjct: 494 RSKMEPTIYTYNIM 507



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 106/408 (25%), Positives = 191/408 (46%), Gaps = 12/408 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC       A  L   M+     P V+ Y T+I G C+   MD A  +F EM   G+ PN
Sbjct: 231 LCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPN 290

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TYS L+  +        A+ L+  + ER      ++ +   F+ L+D+  +EG + E 
Sbjct: 291 VVTYSSLISCLCNYGRWSDASRLLSDMIER-----KINPDVFTFSALIDAFVKEGKLVEA 345

Query: 124 FRIAEDMPQGKSVNEEFAC-GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
            ++ ++M + +S++        +I+  C   R   A ++   M  +   P +V+YN+++ 
Sbjct: 346 EKLYDEMVK-RSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIK 404

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           G CK+       ++  E  Q G + +  TY +L++GL    D + A+++ + M+S     
Sbjct: 405 GFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPP 464

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
                N  L  LC      + + V  ++ +++ +P + T N +I G CK G++E+   + 
Sbjct: 465 NIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLF 524

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
            ++ + K   PD V + T+I G    G  +EA + L++ M + G  P    YN ++R   
Sbjct: 525 CNL-SLKGVKPDVVAYNTMISGFCRKGSKEEA-DALFKEMKEDGTLPNSGCYNTLIRARL 582

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD 410
           R    E + E+   M   G   D++T  +V + L    +LD  K F D
Sbjct: 583 RDGDREASAELIKEMRSCGFAGDASTIGLVTNML-HDGRLD--KSFLD 627



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 93/328 (28%), Positives = 156/328 (47%), Gaps = 2/328 (0%)

Query: 172 PSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKV 231
           PS++ ++ ++  + K         L E+    G   + +TY +L+   C  S L  A  V
Sbjct: 79  PSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAV 138

Query: 232 LQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK 291
           L  M+           +  L   C  K  +E + ++  M  T  QP+ +T NT+I+G   
Sbjct: 139 LGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFL 198

Query: 292 MGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGI 351
             +  EA+ +++ MVA K C PD VT+  ++ GL   G    A NLL + M Q    PG+
Sbjct: 199 HNKASEAMALIDRMVA-KGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNK-MEQGKLEPGV 256

Query: 352 VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDD 411
           + YN ++ GL + + +++A  +F  M   G+  +  TY+ +I  LC   +  +A R   D
Sbjct: 257 LIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSD 316

Query: 412 IVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSM 471
           ++      D + ++A+I    + GK+ EA     E+V   + P+IV Y+ +I+G C    
Sbjct: 317 MIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDR 376

Query: 472 KREAYQILREMRKNGLNPDAVTWRILDK 499
             EA Q+   M      PD VT+  L K
Sbjct: 377 LDEAKQMFEFMVSKHCFPDVVTYNTLIK 404



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 66/125 (52%), Gaps = 8/125 (6%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ +C   +V +   LF ++  +G  P+VV+Y T+I G+CR G  + A  +F EM+  G 
Sbjct: 508 IEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGT 567

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLS-VNNAAFANLVDSLCREGY 119
           LPNS  Y+ L+R  LR  D E +        E +KE        +A+   LV ++  +G 
Sbjct: 568 LPNSGCYNTLIRARLRDGDREAS-------AELIKEMRSCGFAGDASTIGLVTNMLHDGR 620

Query: 120 VNEVF 124
           +++ F
Sbjct: 621 LDKSF 625


>gi|225452994|ref|XP_002263091.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 588

 Score =  218 bits (556), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 138/511 (27%), Positives = 243/511 (47%), Gaps = 42/511 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC L+RV  A      +   GH P+  ++TTLI G C  G++  A  +FD+M   G 
Sbjct: 112 INSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGF 171

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +TY  L+ G+ +  +   A  L+     R  E+ +   N   F+ L+DSLC++  V
Sbjct: 172 QPNVVTYGTLINGLCKVGNTSAAIRLL-----RSMEQGNCQPNVVVFSTLIDSLCKDRQV 226

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E F I  +                                   M  +G++P++V+YNS+
Sbjct: 227 TEAFNIFSE-----------------------------------MITKGISPNIVTYNSL 251

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +HGLCK         L+ E +    +P   T   +V+ LC E  + +A  V+  M+ +  
Sbjct: 252 IHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGV 311

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                  N  +   CL       + V   M+   C  +VI+ NT+ING+CK+  +++A+ 
Sbjct: 312 EPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMY 371

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +  +M   +   P+ VT+ T+I GL +VGR+Q+A++L ++ M  RG  P +VTY  +   
Sbjct: 372 LFEEMSRQEL-TPNTVTYNTLIHGLCHVGRLQDAISLFHE-MVARGQIPDLVTYRTLSDY 429

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L + R +++A  +   + G     D   Y  ++DG+C + +L++A+  + ++       +
Sbjct: 430 LCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPN 489

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
            + Y  MI GLC+ G + EA     E+  +G +PN   YN++  G  + +      ++L 
Sbjct: 490 VWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRTIELLE 549

Query: 481 EMRKNGLNPDAVTWRILDKLHGNRGNDFGLR 511
           EM   G + D  T  +L  +  + G D  ++
Sbjct: 550 EMLARGFSVDVSTTTLLVGMLSDDGLDQSVK 580



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 102/395 (25%), Positives = 192/395 (48%), Gaps = 3/395 (0%)

Query: 107 FANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMR 166
           F  L+ S+ +  + + +  ++  M       + +    +I+SLC   R   A   +  + 
Sbjct: 73  FNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAIVINSLCHLNRVDFAFSALAKIL 132

Query: 167 KRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLE 226
           K G  P   ++ +++ GLC  G    A  L ++ I  G+ P+  TY  L+ GLC   +  
Sbjct: 133 KLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTS 192

Query: 227 KARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVI 286
            A ++L+ M          + +  + +LC  +  TE  N+   M+     P+++T N++I
Sbjct: 193 AAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLI 252

Query: 287 NGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
           +G CK+   +    ++N+MV  K   PD  T  T++  L   G + EA +++  +M  RG
Sbjct: 253 HGLCKLCEWKHVTTLMNEMVDSKI-MPDVFTLNTVVDALCKEGMVAEAHDVV-DMMIHRG 310

Query: 347 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
             P +VTYNA++ G      V+ A +VF+ M+    VA+  +Y  +I+G C+   +D+A 
Sbjct: 311 VEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAM 370

Query: 407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466
             ++++       +   Y  +I GLC  G++ +A+   +E+V  G  P++V Y  + D  
Sbjct: 371 YLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYL 430

Query: 467 CKLSMKREAYQILREMRKNGLNPDAVTW-RILDKL 500
           CK     +A  +L+ +  +  +PD   +  ILD +
Sbjct: 431 CKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGM 465



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/273 (29%), Positives = 133/273 (48%), Gaps = 2/273 (0%)

Query: 225 LEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNT 284
           L++A      ML K+    T   N  L ++   K+ + LL++   M      PDV TL  
Sbjct: 51  LDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAI 110

Query: 285 VINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ 344
           VIN  C + R++ A   L  ++      PDA TFTT+I GL   G+I EAL+ L+  M  
Sbjct: 111 VINSLCHLNRVDFAFSALAKILKLGH-QPDATTFTTLIRGLCVEGKIGEALH-LFDKMIG 168

Query: 345 RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 404
            G+ P +VTY  ++ GL ++     A  +   M       +   ++ +ID LC+  Q+ E
Sbjct: 169 EGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTE 228

Query: 405 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
           A   + +++      +   Y ++I GLC+  +       + E+VDS + P++   N V+D
Sbjct: 229 AFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVD 288

Query: 465 GACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
             CK  M  EA+ ++  M   G+ P+ VT+  L
Sbjct: 289 ALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNAL 321



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 96/208 (46%), Gaps = 4/208 (1%)

Query: 295 IEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTY 354
           ++EAL   N M+  K   P  V F  ++  +         L+L  Q M   G  P + T 
Sbjct: 51  LDEALSTFNRMLH-KQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQ-MDSFGIPPDVYTL 108

Query: 355 NAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVW 414
             V+  L  L RV+ A      +L +G   D+TT+  +I GLC   ++ EA   +D ++ 
Sbjct: 109 AIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIG 168

Query: 415 PSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKRE 474
                +   Y  +I GLC+ G    A+  L  +      PN+V ++ +ID  CK     E
Sbjct: 169 EGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTE 228

Query: 475 AYQILREMRKNGLNPDAVTWRILDKLHG 502
           A+ I  EM   G++P+ VT+  L  +HG
Sbjct: 229 AFNIFSEMITKGISPNIVTYNSL--IHG 254


>gi|302142431|emb|CBI19634.3| unnamed protein product [Vitis vinifera]
          Length = 839

 Score =  218 bits (556), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 158/599 (26%), Positives = 262/599 (43%), Gaps = 108/599 (18%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C   +V EA      M++ G  PN+V+Y +LI+GY   G+++ A  V   M   GV
Sbjct: 199 VNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGV 258

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             N +TY++L++G  +   ++ A     K+   M+EE  L  +  A+  L+D  CR G +
Sbjct: 259 SRNVVTYTLLIKGYCKQCKMDEAE----KVLRGMQEEAALVPDERAYGVLIDGYCRTGKI 314

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           ++  R+ ++M +       F C  +I+  C+ G  H A  V+  M    L P   SYN++
Sbjct: 315 DDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTL 374

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK-- 238
           + G C+ G    A+ L ++ +Q G  P+  TY  L++GLC     + A ++   M+ +  
Sbjct: 375 LDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGV 434

Query: 239 ---------------------------KDV-----DRTRIC-NIYLRALCLIKNPTELLN 265
                                      KD+      ++RI  N  +  LC +    E   
Sbjct: 435 APDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEE 494

Query: 266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 325
           +   M    C PD IT  T+I+G+CK   + +A KV   M      +P    + ++I GL
Sbjct: 495 IFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREPI-SPSIEMYNSLISGL 553

Query: 326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL--------------------------- 358
               R+ E  +LL + M  RG +P IVTY A++                           
Sbjct: 554 FKSRRLVEVTDLLTE-MGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSAN 612

Query: 359 --------RGLFRLRRVEEAKEVFNCMLGIGV-------------------VADS----- 386
                    GL+RL R++EA  +   M+  G                    +ADS     
Sbjct: 613 IIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDHECFLKSDIRYAAIQKIADSLDESC 672

Query: 387 --------TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIH 438
                     Y I I GLC++ ++D+A+RF+  +     + DN+ Y  +I G   +G + 
Sbjct: 673 KTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVD 732

Query: 439 EAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           EA     E++  G+ PNIV YN +I+G CK      A ++  ++ + GL P+ VT+  L
Sbjct: 733 EAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTL 791



 Score =  202 bits (514), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 141/555 (25%), Positives = 253/555 (45%), Gaps = 79/555 (14%)

Query: 5   CGLSRVGEAHKLFFDMKSRGH-VPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           C   ++ EA K+   M+     VP+  +Y  LI GYCRTG++D A ++ DEM   G+  N
Sbjct: 273 CKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTN 332

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKL--WERMKEEEDLSVNNAAFANLVDSLCREGYVN 121
               + L+ G  +  ++  A  ++ ++  W       +L  ++ ++  L+D  CREG+ +
Sbjct: 333 LFICNSLINGYCKRGEIHEAEGVITRMVDW-------NLKPDSYSYNTLLDGYCREGHTS 385

Query: 122 EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTP--------- 172
           E F + + M Q            ++  LCR G    A ++ ++M KRG+ P         
Sbjct: 386 EAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLL 445

Query: 173 --------------------------SLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL 206
                                     S +++N+++ GLCK G  + A ++ ++    G  
Sbjct: 446 DGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCS 505

Query: 207 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 266
           P   TY+ L++G C  S++ +A KV   M  +       + N  +  L   +   E+ ++
Sbjct: 506 PDGITYRTLIDGYCKASNVGQAFKVKGAMEREPISPSIEMYNSLISGLFKSRRLVEVTDL 565

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
           L  M      P+++T   +I+G+CK G +++A     +M      A + +  +T++ GL 
Sbjct: 566 LTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSA-NIIICSTMVSGLY 624

Query: 327 NVGRIQEALNLLYQVMPQRGYSP--------------------------------GIVTY 354
            +GRI EA NLL Q M   G+ P                                  + Y
Sbjct: 625 RLGRIDEA-NLLMQKMVDHGFFPDHECFLKSDIRYAAIQKIADSLDESCKTFLLPNNIVY 683

Query: 355 NAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVW 414
           N  + GL +  +V++A+  F+ +   G V D+ TY  +I G   +  +DEA R  D+++ 
Sbjct: 684 NIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLR 743

Query: 415 PSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKRE 474
              + +   Y A+I GLC+S  +  A    ++L   G+ PN+V YN +IDG CK+     
Sbjct: 744 RGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDA 803

Query: 475 AYQILREMRKNGLNP 489
           A+++  +M + G++P
Sbjct: 804 AFKLKDKMIEEGISP 818



 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 145/557 (26%), Positives = 244/557 (43%), Gaps = 65/557 (11%)

Query: 13  AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVR 72
           AH ++  M   G VP+V   + +++ +C+ G++D A     +M + GV PN +TY  L+ 
Sbjct: 176 AHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLIN 235

Query: 73  GVLRTRDVERAN-VLMF------------------------------KLWERMKEEEDLS 101
           G +   DVE A  VL F                              K+   M+EE  L 
Sbjct: 236 GYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALV 295

Query: 102 VNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRV 161
            +  A+  L+D  CR G +++  R+ ++M +       F C  +I+  C+ G  H A  V
Sbjct: 296 PDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGV 355

Query: 162 VYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCG 221
           +  M    L P   SYN+++ G C+ G    A+ L ++ +Q G  P+  TY  L++GLC 
Sbjct: 356 ITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCR 415

Query: 222 ESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVIT 281
               + A ++   M+ +         +  L  L  ++N      +   +L        IT
Sbjct: 416 VGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRIT 475

Query: 282 LNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQV 341
            NT+I+G CKMG++ EA ++ + M     C+PD +T+ T+I G      + +A   +   
Sbjct: 476 FNTMISGLCKMGKMVEAEEIFDKM-KDLGCSPDGITYRTLIDGYCKASNVGQAFK-VKGA 533

Query: 342 MPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ 401
           M +   SP I  YN+++ GLF+ RR+ E  ++   M   G+  +  TY  +IDG C+   
Sbjct: 534 MEREPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGM 593

Query: 402 LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG---------- 451
           LD+A   + ++       +  + + M+ GL R G+I EA   + ++VD G          
Sbjct: 594 LDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDHECFLK 653

Query: 452 ----------------------VTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNP 489
                                 + PN + YN+ I G CK     +A +    +   G  P
Sbjct: 654 SDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVP 713

Query: 490 DAVTWRILDKLHGNRGN 506
           D  T+  L   +   GN
Sbjct: 714 DNFTYCTLIHGYSAAGN 730



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 106/382 (27%), Positives = 196/382 (51%), Gaps = 3/382 (0%)

Query: 109 NLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKR 168
           +L+++L + G  +    + + M +   V + F    M+++ C+ G+   A+  V  M   
Sbjct: 162 SLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENL 221

Query: 169 GLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKA 228
           G+ P++V+Y+S+++G    G    A  +L+   + G   +  TY +L++G C +  +++A
Sbjct: 222 GVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEA 281

Query: 229 RKVLQFMLSKKD-VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVIN 287
            KVL+ M  +   V   R   + +   C      + + +L  ML+   + ++   N++IN
Sbjct: 282 EKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLIN 341

Query: 288 GFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGY 347
           G+CK G I EA  V+  MV      PD+ ++ T++ G    G   EA NL  + M Q G 
Sbjct: 342 GYCKRGEIHEAEGVITRMVDWNL-KPDSYSYNTLLDGYCREGHTSEAFNLCDK-MLQEGI 399

Query: 348 SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKR 407
            P ++TYN +L+GL R+   ++A ++++ M+  GV  D   Y+ ++DGL +    + A  
Sbjct: 400 EPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGAST 459

Query: 408 FWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGAC 467
            W DI+          +  MI GLC+ GK+ EA     ++ D G +P+ + Y  +IDG C
Sbjct: 460 LWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYC 519

Query: 468 KLSMKREAYQILREMRKNGLNP 489
           K S   +A+++   M +  ++P
Sbjct: 520 KASNVGQAFKVKGAMEREPISP 541



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 100/366 (27%), Positives = 183/366 (50%), Gaps = 40/366 (10%)

Query: 163 YVMRKRGLTPSLVSYNSIVHGLCKHGGCM----RAY--QLLE---------------EGI 201
           +V +++   P++ SY  +VH L +  G M    RAY  QL++                G+
Sbjct: 57  FVSKQQNFRPNVKSYCKLVHILSR--GRMYDETRAYLNQLVDLCKFKDRGNVIWDELVGV 114

Query: 202 --QFGYLPS--EHTYKVLVE-GLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCL 256
             +F + P+  +   KV VE GL      + A  V   M     +   R CN  L  L  
Sbjct: 115 YREFAFSPTVFDMILKVYVEKGLT-----KNALYVFDNMGKCGRIPSLRSCNSLLNNL-- 167

Query: 257 IKNPTELLNVLVF--MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPD 314
           +KN        V+  M++    PDV  ++ ++N FCK G+++EA   +  M       P+
Sbjct: 168 VKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKM-ENLGVEPN 226

Query: 315 AVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVF 374
            VT+ ++I G +++G ++ A  +L + M ++G S  +VTY  +++G  +  +++EA++V 
Sbjct: 227 IVTYHSLINGYVSLGDVEAAKGVL-KFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVL 285

Query: 375 NCMLG-IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR 433
             M     +V D   Y ++IDG C + ++D+A R  D+++      + ++  ++I G C+
Sbjct: 286 RGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCK 345

Query: 434 SGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVT 493
            G+IHEA   +  +VD  + P+   YN ++DG C+     EA+ +  +M + G+ P  +T
Sbjct: 346 RGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLT 405

Query: 494 WRILDK 499
           +  L K
Sbjct: 406 YNTLLK 411


>gi|297797449|ref|XP_002866609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312444|gb|EFH42868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 724

 Score =  218 bits (556), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 144/498 (28%), Positives = 256/498 (51%), Gaps = 12/498 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M  LC ++ V  A  +  DM   G VPN V Y TLIH   +   ++ A ++ +EM   G 
Sbjct: 218 MKALCAVNEVDSALSVLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGC 277

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P++ T++ ++ G+ +   +  A  ++ ++  R    +D++     +  L++ LC+ G V
Sbjct: 278 VPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFTPDDIT-----YGYLMNGLCKIGRV 332

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVM-RKRGLTPSLVSYNS 179
           +    +   +P+  SV        +I      GR   A  V+  M    G+ P + +YNS
Sbjct: 333 DAAKDLFYRIPKPTSV----IFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNS 388

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           +++G  K G    A ++L +    G  P+ ++Y +LV+G C    +++A  +L  M +  
Sbjct: 389 LIYGYWKKGLVGLALEVLRDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNLLNEMSADG 448

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
               T   N  + A C      E + +   M +  C+PDV T N++I+G C++  I+ AL
Sbjct: 449 LKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHAL 508

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
            +L DM++    A + VT+ T+I   L  G I+EA  L+ +++ Q G     +TYN++++
Sbjct: 509 WLLRDMISEGVVA-NTVTYNTLINAFLRRGEIKEARKLVNEMVFQ-GSLLDEITYNSLIK 566

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
           GL R   V++A+ +F  ML  G+V  S +  I+I+GLC S  ++EA  F  ++V   +  
Sbjct: 567 GLCRAGEVDKARSLFEKMLRDGLVPSSISCNILINGLCRSGMVEEAVEFQKEMVLRGSTP 626

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           D   + ++I GLCR+G+I + +    +L   G+ P+ V YN ++   CK     +A  +L
Sbjct: 627 DIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTYNTLMSWLCKGGFVYDACLLL 686

Query: 480 REMRKNGLNPDAVTWRIL 497
            E  ++G  P+  TW IL
Sbjct: 687 DEGIEDGFVPNDRTWSIL 704



 Score =  217 bits (553), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 144/490 (29%), Positives = 245/490 (50%), Gaps = 20/490 (4%)

Query: 13  AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVR 72
           A  +F+DM SR   P + ++  ++   C   E+D A  V  +M   G +PNS+ Y  L+ 
Sbjct: 195 AANVFYDMLSRKIPPTLFTFGVVMKALCAVNEVDSALSVLRDMTKHGCVPNSVIYQTLIH 254

Query: 73  GVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQ 132
            + +   V  A     +L E M     +  +   F +++  LC+   +NE  ++   M  
Sbjct: 255 SLSKCNRVNEA----LQLLEEMFLMGCVP-DAETFNDVILGLCKFDRINEAAKMVNRMLI 309

Query: 133 GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMR 192
                ++   G++++ LC+ GR   A  + Y + K    P+ V +N+++HG   HG    
Sbjct: 310 RGFTPDDITYGYLMNGLCKIGRVDAAKDLFYRIPK----PTSVIFNTLIHGFVTHGRLDD 365

Query: 193 AYQLLEEGI-QFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYL 251
           A  +L + +  +G +P   TY  L+ G   +  +  A +VL+ M +K          I +
Sbjct: 366 AKAVLSDMVTSYGIVPDVCTYNSLIYGYWKKGLVGLALEVLRDMRNKGCKPNVYSYTILV 425

Query: 252 RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC 311
              C +    E  N+L  M     +P+ +  N +I+ FCK  RI EA+++  +M   K C
Sbjct: 426 DGFCKLGKIDEAYNLLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREM-PRKGC 484

Query: 312 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK 371
            PD  TF ++I GL  V  I+ AL LL  ++ + G     VTYN ++    R   ++EA+
Sbjct: 485 KPDVYTFNSLISGLCEVDEIKHALWLLRDMISE-GVVANTVTYNTLINAFLRRGEIKEAR 543

Query: 372 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD----DIVWPSNIHDNYVYAAM 427
           ++ N M+  G + D  TY  +I GLC + ++D+A+  ++    D + PS+I  N     +
Sbjct: 544 KLVNEMVFQGSLLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGLVPSSISCN----IL 599

Query: 428 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
           I GLCRSG + EAV F  E+V  G TP+IV +N +I+G C+     +   + R+++  G+
Sbjct: 600 INGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGI 659

Query: 488 NPDAVTWRIL 497
            PD VT+  L
Sbjct: 660 PPDTVTYNTL 669



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 125/502 (24%), Positives = 220/502 (43%), Gaps = 14/502 (2%)

Query: 3   QLCGLSR----VGEAHKLF-FDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRH 57
           QLC L      V  + +LF +    +G+  +   Y  LI      GE     ++  +M+ 
Sbjct: 74  QLCKLLELPLDVSTSMELFSWTGSQKGYRHSFDVYQVLIGKLGSNGEFKTIDRLLMQMKD 133

Query: 58  CGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCRE 117
            G++     +  ++R   +     +   LM ++      E      N     LV   C +
Sbjct: 134 EGIVFKESLFISIMRDYDKAGFPGQTTRLMLEMRNVYSCEPTFKSYNVVLEILVSGNCHK 193

Query: 118 GYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
              N  +    DM   K     F  G ++ +LC       A  V+  M K G  P+ V Y
Sbjct: 194 VAANVFY----DMLSRKIPPTLFTFGVVMKALCAVNEVDSALSVLRDMTKHGCVPNSVIY 249

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
            +++H L K      A QLLEE    G +P   T+  ++ GLC    + +A K++  ML 
Sbjct: 250 QTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLI 309

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
           +            +  LC I    +    L + +    +P  +  NT+I+GF   GR+++
Sbjct: 310 RGFTPDDITYGYLMNGLCKIGR-VDAAKDLFYRIP---KPTSVIFNTLIHGFVTHGRLDD 365

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           A  VL+DMV      PD  T+ ++I+G    G +  AL +L   M  +G  P + +Y  +
Sbjct: 366 AKAVLSDMVTSYGIVPDVCTYNSLIYGYWKKGLVGLALEVLRD-MRNKGCKPNVYSYTIL 424

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 417
           + G  +L +++EA  + N M   G+  ++  +  +I   C+ +++ EA   + ++     
Sbjct: 425 VDGFCKLGKIDEAYNLLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGC 484

Query: 418 IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQ 477
             D Y + ++I GLC   +I  A+  L +++  GV  N V YN +I+   +    +EA +
Sbjct: 485 KPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARK 544

Query: 478 ILREMRKNGLNPDAVTWRILDK 499
           ++ EM   G   D +T+  L K
Sbjct: 545 LVNEMVFQGSLLDEITYNSLIK 566



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 105/431 (24%), Positives = 203/431 (47%), Gaps = 16/431 (3%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R+ EA K+   M  RG  P+ ++Y  L++G C+ G +D A  +F  +      P 
Sbjct: 291 LCKFDRINEAAKMVNRMLIRGFTPDDITYGYLMNGLCKIGRVDAAKDLFYRIPK----PT 346

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           S+ ++ L+ G +    ++ A  ++  +        D+   N+    L+    ++G V   
Sbjct: 347 SVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNS----LIYGYWKKGLVGLA 402

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             +  DM         ++   ++D  C+ G+   A  ++  M   GL P+ V +N ++  
Sbjct: 403 LEVLRDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNLLNEMSADGLKPNTVGFNCLISA 462

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK      A ++  E  + G  P  +T+  L+ GLC   +++ A  +L+ M+S+  V  
Sbjct: 463 FCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVAN 522

Query: 244 TRICNIYLRALCL---IKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           T   N  + A      IK   +L+N +VF        D IT N++I G C+ G +++A  
Sbjct: 523 TVTYNTLINAFLRRGEIKEARKLVNEMVFQGSLL---DEITYNSLIKGLCRAGEVDKARS 579

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +   M+      P +++   +I GL   G ++EA+    + M  RG +P IVT+N+++ G
Sbjct: 580 LFEKMLRDGL-VPSSISCNILINGLCRSGMVEEAVEFQKE-MVLRGSTPDIVTFNSLING 637

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L R  R+E+   +F  +   G+  D+ TY  ++  LC+   + +A    D+ +    + +
Sbjct: 638 LCRAGRIEDGLTMFRKLQAEGIPPDTVTYNTLMSWLCKGGFVYDACLLLDEGIEDGFVPN 697

Query: 421 NYVYAAMIKGL 431
           +  ++ +++ L
Sbjct: 698 DRTWSILLQSL 708



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 103/422 (24%), Positives = 193/422 (45%), Gaps = 9/422 (2%)

Query: 88  FKLWERM---KEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGH 144
           FK  +R+    ++E +    + F +++    + G+  +  R+  +M    S    F   +
Sbjct: 121 FKTIDRLLMQMKDEGIVFKESLFISIMRDYDKAGFPGQTTRLMLEMRNVYSCEPTFKSYN 180

Query: 145 MIDSLCRSGRNHG-ASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQF 203
           ++  +  SG  H  A+ V Y M  R + P+L ++  ++  LC       A  +L +  + 
Sbjct: 181 VVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKALCAVNEVDSALSVLRDMTKH 240

Query: 204 GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTEL 263
           G +P+   Y+ L+  L   + + +A ++L+ M     V      N  +  LC      E 
Sbjct: 241 GCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEA 300

Query: 264 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF 323
             ++  ML     PD IT   ++NG CK+GR++ A  +       +   P +V F T+I 
Sbjct: 301 AKMVNRMLIRGFTPDDITYGYLMNGLCKIGRVDAAKDLFY-----RIPKPTSVIFNTLIH 355

Query: 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 383
           G +  GR+ +A  +L  ++   G  P + TYN+++ G ++   V  A EV   M   G  
Sbjct: 356 GFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKKGLVGLALEVLRDMRNKGCK 415

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
            +  +Y I++DG C+  ++DEA    +++       +   +  +I   C+  +I EAV  
Sbjct: 416 PNVYSYTILVDGFCKLGKIDEAYNLLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEI 475

Query: 444 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGN 503
             E+   G  P++  +N +I G C++   + A  +LR+M   G+  + VT+  L      
Sbjct: 476 FREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLR 535

Query: 504 RG 505
           RG
Sbjct: 536 RG 537



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 119/224 (53%), Gaps = 5/224 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC +  +  A  L  DM S G V N V+Y TLI+ + R GE+  A K+ +EM   G L +
Sbjct: 498 LCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSLLD 557

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY+ L++G+ R  +V++A  L  K+         +S N      L++ LCR G V E 
Sbjct: 558 EITYNSLIKGLCRAGEVDKARSLFEKMLRDGLVPSSISCNI-----LINGLCRSGMVEEA 612

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
               ++M    S  +      +I+ LCR+GR      +   ++  G+ P  V+YN+++  
Sbjct: 613 VEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTYNTLMSW 672

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEK 227
           LCK G    A  LL+EGI+ G++P++ T+ +L++ L  +  L++
Sbjct: 673 LCKGGFVYDACLLLDEGIEDGFVPNDRTWSILLQSLVPQETLDR 716


>gi|147768816|emb|CAN62673.1| hypothetical protein VITISV_031897 [Vitis vinifera]
          Length = 653

 Score =  218 bits (555), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 138/511 (27%), Positives = 243/511 (47%), Gaps = 42/511 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC L+RV  A      +   GH P+  ++TTLI G C  G++  A  +FD+M   G 
Sbjct: 112 INSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGF 171

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +TY  L+ G+ +  +   A  L+     R  E+ +   N   F+ L+DSLC++  V
Sbjct: 172 QPNVVTYGTLINGLCKVGNTSAAIRLL-----RSMEQGNCQPNVVVFSTLIDSLCKDRQV 226

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E F I  +                                   M  +G++P++V+YNS+
Sbjct: 227 TEAFNIFSE-----------------------------------MITKGISPNIVTYNSL 251

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +HGLCK         L+ E +    +P   T   +V+ LC E  + +A  V+  M+ +  
Sbjct: 252 IHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGV 311

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                  N  +   CL       + V   M+   C  +VI+ NT+ING+CK+  +++A+ 
Sbjct: 312 EPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMY 371

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +  +M   +   P+ VT+ T+I GL +VGR+Q+A++L ++ M  RG  P +VTY  +   
Sbjct: 372 LFEEMSRQEL-TPNTVTYNTLIHGLCHVGRLQDAISLFHE-MVARGQIPDLVTYRTLSDY 429

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L + R +++A  +   + G     D   Y  ++DG+C + +L++A+  + ++       +
Sbjct: 430 LCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPN 489

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
            + Y  MI GLC+ G + EA     E+  +G +PN   YN++  G  + +      ++L 
Sbjct: 490 VWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRTIELLE 549

Query: 481 EMRKNGLNPDAVTWRILDKLHGNRGNDFGLR 511
           EM   G + D  T  +L  +  + G D  ++
Sbjct: 550 EMLARGFSVDVSTTTLLVGMLSDDGLDQSVK 580



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 102/395 (25%), Positives = 192/395 (48%), Gaps = 3/395 (0%)

Query: 107 FANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMR 166
           F  L+ S+ +  + + +  ++  M       + +    +I+SLC   R   A   +  + 
Sbjct: 73  FNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAIVINSLCHLNRVDFAFSALAKIL 132

Query: 167 KRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLE 226
           K G  P   ++ +++ GLC  G    A  L ++ I  G+ P+  TY  L+ GLC   +  
Sbjct: 133 KLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTS 192

Query: 227 KARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVI 286
            A ++L+ M          + +  + +LC  +  TE  N+   M+     P+++T N++I
Sbjct: 193 AAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLI 252

Query: 287 NGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
           +G CK+   +    ++N+MV  K   PD  T  T++  L   G + EA +++  +M  RG
Sbjct: 253 HGLCKLCEWKHVTTLMNEMVDSKI-MPDVFTLNTVVDALCKEGMVAEAHDVV-DMMIHRG 310

Query: 347 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
             P +VTYNA++ G      V+ A +VF+ M+    VA+  +Y  +I+G C+   +D+A 
Sbjct: 311 VEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAM 370

Query: 407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466
             ++++       +   Y  +I GLC  G++ +A+   +E+V  G  P++V Y  + D  
Sbjct: 371 YLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYL 430

Query: 467 CKLSMKREAYQILREMRKNGLNPDAVTW-RILDKL 500
           CK     +A  +L+ +  +  +PD   +  ILD +
Sbjct: 431 CKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGM 465



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/273 (29%), Positives = 133/273 (48%), Gaps = 2/273 (0%)

Query: 225 LEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNT 284
           L++A      ML K+    T   N  L ++   K+ + LL++   M      PDV TL  
Sbjct: 51  LDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAI 110

Query: 285 VINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ 344
           VIN  C + R++ A   L  ++      PDA TFTT+I GL   G+I EAL+ L+  M  
Sbjct: 111 VINSLCHLNRVDFAFSALAKILKLGH-QPDATTFTTLIRGLCVEGKIGEALH-LFDKMIG 168

Query: 345 RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 404
            G+ P +VTY  ++ GL ++     A  +   M       +   ++ +ID LC+  Q+ E
Sbjct: 169 EGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTE 228

Query: 405 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
           A   + +++      +   Y ++I GLC+  +       + E+VDS + P++   N V+D
Sbjct: 229 AFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVD 288

Query: 465 GACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
             CK  M  EA+ ++  M   G+ P+ VT+  L
Sbjct: 289 ALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNAL 321



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 96/208 (46%), Gaps = 4/208 (1%)

Query: 295 IEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTY 354
           ++EAL   N M+  K   P  V F  ++  +         L+L  Q M   G  P + T 
Sbjct: 51  LDEALSTFNRMLH-KQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQ-MDSFGIPPDVYTL 108

Query: 355 NAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVW 414
             V+  L  L RV+ A      +L +G   D+TT+  +I GLC   ++ EA   +D ++ 
Sbjct: 109 AIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIG 168

Query: 415 PSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKRE 474
                +   Y  +I GLC+ G    A+  L  +      PN+V ++ +ID  CK     E
Sbjct: 169 EGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTE 228

Query: 475 AYQILREMRKNGLNPDAVTWRILDKLHG 502
           A+ I  EM   G++P+ VT+  L  +HG
Sbjct: 229 AFNIFSEMITKGISPNIVTYNSL--IHG 254


>gi|296085044|emb|CBI28459.3| unnamed protein product [Vitis vinifera]
          Length = 973

 Score =  218 bits (555), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 142/508 (27%), Positives = 254/508 (50%), Gaps = 12/508 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ +C   ++ +A ++  +M  +G  P+  +Y+ LI G+CR   M  A+++ DEM+   +
Sbjct: 353 LNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKL 412

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P  LTYSV++ G+ R  +++  N ++     R      L  N   +  L+ +  +EG V
Sbjct: 413 APTVLTYSVIINGLCRCGNLQGTNAIL-----REMVMNGLKPNAVVYTTLMTAHAKEGRV 467

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E   I E M +   + + F    +I   C++ R   A   +  M +R L P+  +Y + 
Sbjct: 468 EESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAF 527

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G  K G    A +   E +  G LP+   Y  L+EG C E ++ +A  V +F+LS++ 
Sbjct: 528 IDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRV 587

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           +   +  ++ +  L       E   +   + +    P+  T N++I+G CK G +++A +
Sbjct: 588 LQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQ 647

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +L +M   K   PD VT+  +I GL   G I+ A NL +  +  RG +P  VTY A++ G
Sbjct: 648 LLEEMCI-KGINPDIVTYNILIDGLCKAGEIERAKNL-FDDIEGRGLTPNCVTYAAMVDG 705

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
             + +    A ++   ML  GV  D+  Y ++++  C+  + ++A   + +++       
Sbjct: 706 YCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEML-EKGFAS 764

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              +  +I+G C+SGK+ EA H L E+++    PN V Y  +ID  CK  M  EA ++  
Sbjct: 765 TVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWL 824

Query: 481 EMRKNGLNPDAVTWRILDKLHG--NRGN 506
           EM++  + P A T+  L  LHG  N GN
Sbjct: 825 EMQERNVMPTAKTYTSL--LHGYHNIGN 850



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 133/500 (26%), Positives = 235/500 (47%), Gaps = 59/500 (11%)

Query: 15  KLFFDMKSRGHVPNVVSYTTLIHGYCRTG----------EMDVAYKVFDE-------MRH 57
           K+F  M +   +P+V +YT +I  +C+ G          EM    ++ DE       M  
Sbjct: 210 KVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKARLLDEAIELKRSMVD 269

Query: 58  CGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCRE 117
            G++P+  TY +L+ G    +    A +++ ++ +   + E ++ N      L+D   R+
Sbjct: 270 KGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNA-----LIDGFMRQ 324

Query: 118 GYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
           G + + FRI ++M          ACG                          +  +L+ +
Sbjct: 325 GDIEQAFRIKDEM---------VACG--------------------------IEANLIIW 349

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
           N++++G+CK G   +A ++++E ++ G  P   TY +L+EG C   ++ +A ++L  M  
Sbjct: 350 NTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKK 409

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
           +K        ++ +  LC   N      +L  M+    +P+ +   T++    K GR+EE
Sbjct: 410 RKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEE 469

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           +  +L  M   +   PD   + ++I G     R++EA   L +++ +R   P   TY A 
Sbjct: 470 SRMILERMRE-QGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERR-LRPNAHTYGAF 527

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 417
           + G  +   +E A   FN ML  GV+ +   Y  +I+G C+   + EA   +  I+    
Sbjct: 528 IDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRV 587

Query: 418 IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQ 477
           + D   Y+ +I GL R+GK+HEA     EL + G+ PN   YN +I G+CK     +A Q
Sbjct: 588 LQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQ 647

Query: 478 ILREMRKNGLNPDAVTWRIL 497
           +L EM   G+NPD VT+ IL
Sbjct: 648 LLEEMCIKGINPDIVTYNIL 667



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 131/491 (26%), Positives = 244/491 (49%), Gaps = 17/491 (3%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           EA +L   M  +G VP++ +Y  LI+G+C       A  +  EM   G+ P  +TY+ L+
Sbjct: 259 EAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALI 318

Query: 72  RGVLRTRDVERANVLMFKLWERMKE---EEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
            G +R  D+E+A    F++ + M     E +L + N     L++ +C+ G + +   I +
Sbjct: 319 DGFMRQGDIEQA----FRIKDEMVACGIEANLIIWNT----LLNGVCKAGKMEKALEIMQ 370

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
           +M +     +      +I+  CR      A  ++  M+KR L P++++Y+ I++GLC+ G
Sbjct: 371 EMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCG 430

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
                  +L E +  G  P+   Y  L+     E  +E++R +L+ M  +  +      N
Sbjct: 431 NLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYN 490

Query: 249 IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 308
             +   C  K   E    L+ ML+ + +P+  T    I+G+ K G +E A +  N+M++ 
Sbjct: 491 SLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLS- 549

Query: 309 KFCA--PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 366
             C   P+   +T +I G    G + EA ++   ++ +R     + TY+ ++ GL R  +
Sbjct: 550 --CGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQ-DVQTYSVLIHGLSRNGK 606

Query: 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAA 426
           + EA  +F+ +   G++ ++ TY  +I G C+   +D+A +  +++       D   Y  
Sbjct: 607 MHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNI 666

Query: 427 MIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG 486
           +I GLC++G+I  A +   ++   G+TPN V Y  ++DG CK      A+Q+L EM   G
Sbjct: 667 LIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRG 726

Query: 487 LNPDAVTWRIL 497
           + PDA  + ++
Sbjct: 727 VPPDAFIYNVI 737



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 135/486 (27%), Positives = 233/486 (47%), Gaps = 16/486 (3%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C   R+ EA     +M  R   PN  +Y   I GY + GEM++A + F+EM  CGVLPN
Sbjct: 496 FCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPN 555

Query: 64  SLTYSVLVRGVLRTRDVERA-NVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
              Y+ L+ G  +  +V  A +V  F L  R+ ++         ++ L+  L R G ++E
Sbjct: 556 VGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQ------TYSVLIHGLSRNGKMHE 609

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
            F I  ++ +   +   F    +I   C+ G    AS+++  M  +G+ P +V+YN ++ 
Sbjct: 610 AFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILID 669

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           GLCK G   RA  L ++    G  P+  TY  +V+G C   +   A ++L+ ML +    
Sbjct: 670 GLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPP 729

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
              I N+ L   C  +   + L++   ML+ +     ++ NT+I G+CK G+++EA  +L
Sbjct: 730 DAFIYNVILNFCCKEEKFEKALDLFQEMLE-KGFASTVSFNTLIEGYCKSGKLQEANHLL 788

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
            +M+  +F  P+ VT+T++I      G + EA  L  + M +R   P   TY ++L G  
Sbjct: 789 EEMIEKQFI-PNHVTYTSLIDHNCKAGMMGEAKRLWLE-MQERNVMPTAKTYTSLLHGYH 846

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV-----WPSN 417
            +  + E   +F  M+  G+  D  TY ++ID  C    + EA +  D+I+       S 
Sbjct: 847 NIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVKGMPMKSG 906

Query: 418 IHDNYVYAAMI-KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAY 476
                   ++I +G   +G + EA   L  +V  G   N      ++DG    +   ++ 
Sbjct: 907 FRLGLPTCSVIARGFQIAGNMDEAAEVLRSMVKFGWVSNTTSLGDLVDGNQNGANSEDSD 966

Query: 477 QILREM 482
            +L++M
Sbjct: 967 NLLKQM 972



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/276 (28%), Positives = 133/276 (48%), Gaps = 19/276 (6%)

Query: 247 CNIYLRALCLIKNPTELL-NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM 305
           CN  L  L L  N  EL   V   M   +  PDV T   +I+  CK+G +++A +VL +M
Sbjct: 192 CNSLLGDL-LKGNKVELFWKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEM 250

Query: 306 ----------------VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSP 349
                           +  K   PD  T+  +I G     R +EA  +L + M   G  P
Sbjct: 251 GEKARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLE-MIDVGLKP 309

Query: 350 GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFW 409
             +TYNA++ G  R   +E+A  + + M+  G+ A+   +  +++G+C++ ++++A    
Sbjct: 310 EPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIM 369

Query: 410 DDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKL 469
            +++      D+  Y+ +I+G CR   +  A   L E+    + P ++ Y+V+I+G C+ 
Sbjct: 370 QEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRC 429

Query: 470 SMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
              +    ILREM  NGL P+AV +  L   H   G
Sbjct: 430 GNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEG 465



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 46/83 (55%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C    +GEA +L+ +M+ R  +P   +YT+L+HGY   G M     +F+EM   G+
Sbjct: 807 IDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGI 866

Query: 61  LPNSLTYSVLVRGVLRTRDVERA 83
            P+ +TY V++    R  +V  A
Sbjct: 867 EPDKMTYYVMIDAYCREGNVMEA 889


>gi|359485848|ref|XP_002267947.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 1011

 Score =  218 bits (555), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 142/508 (27%), Positives = 254/508 (50%), Gaps = 12/508 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ +C   ++ +A ++  +M  +G  P+  +Y+ LI G+CR   M  A+++ DEM+   +
Sbjct: 362 LNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKL 421

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P  LTYSV++ G+ R  +++  N ++     R      L  N   +  L+ +  +EG V
Sbjct: 422 APTVLTYSVIINGLCRCGNLQGTNAIL-----REMVMNGLKPNAVVYTTLMTAHAKEGRV 476

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E   I E M +   + + F    +I   C++ R   A   +  M +R L P+  +Y + 
Sbjct: 477 EESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAF 536

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G  K G    A +   E +  G LP+   Y  L+EG C E ++ +A  V +F+LS++ 
Sbjct: 537 IDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRV 596

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           +   +  ++ +  L       E   +   + +    P+  T N++I+G CK G +++A +
Sbjct: 597 LQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQ 656

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +L +M   K   PD VT+  +I GL   G I+ A NL +  +  RG +P  VTY A++ G
Sbjct: 657 LLEEMCI-KGINPDIVTYNILIDGLCKAGEIERAKNL-FDDIEGRGLTPNCVTYAAMVDG 714

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
             + +    A ++   ML  GV  D+  Y ++++  C+  + ++A   + +++       
Sbjct: 715 YCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEML-EKGFAS 773

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              +  +I+G C+SGK+ EA H L E+++    PN V Y  +ID  CK  M  EA ++  
Sbjct: 774 TVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWL 833

Query: 481 EMRKNGLNPDAVTWRILDKLHG--NRGN 506
           EM++  + P A T+  L  LHG  N GN
Sbjct: 834 EMQERNVMPTAKTYTSL--LHGYHNIGN 859



 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 134/493 (27%), Positives = 238/493 (48%), Gaps = 42/493 (8%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C +  V +A ++  +M  +G  PN+V+Y  +I G CR   +D A ++   M   G++P+ 
Sbjct: 226 CKVGNVKDAKRVLLEMGEKGCSPNLVTYNVIIGGLCRARLLDEAIELKRSMVDKGLVPDL 285

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
            TY +L+ G    +    A +++ ++ +   + E ++ N      L+D   R+G + + F
Sbjct: 286 YTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNA-----LIDGFMRQGDIEQAF 340

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
           RI ++M          ACG                          +  +L+ +N++++G+
Sbjct: 341 RIKDEM---------VACG--------------------------IEANLIIWNTLLNGV 365

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
           CK G   +A ++++E ++ G  P   TY +L+EG C   ++ +A ++L  M  +K     
Sbjct: 366 CKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTV 425

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
              ++ +  LC   N      +L  M+    +P+ +   T++    K GR+EE+  +L  
Sbjct: 426 LTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILER 485

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
           M   +   PD   + ++I G     R++EA   L +++ +R   P   TY A + G  + 
Sbjct: 486 MRE-QGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERR-LRPNAHTYGAFIDGYSKA 543

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY 424
             +E A   FN ML  GV+ +   Y  +I+G C+   + EA   +  I+    + D   Y
Sbjct: 544 GEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTY 603

Query: 425 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484
           + +I GL R+GK+HEA     EL + G+ PN   YN +I G+CK     +A Q+L EM  
Sbjct: 604 SVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCI 663

Query: 485 NGLNPDAVTWRIL 497
            G+NPD VT+ IL
Sbjct: 664 KGINPDIVTYNIL 676



 Score =  209 bits (531), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 144/502 (28%), Positives = 244/502 (48%), Gaps = 12/502 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C   R+ EA     +M  R   PN  +Y   I GY + GEM++A + F+EM  CGVLPN
Sbjct: 505 FCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPN 564

Query: 64  SLTYSVLVRGVLRTRDVERA-NVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
              Y+ L+ G  +  +V  A +V  F L  R+ ++         ++ L+  L R G ++E
Sbjct: 565 VGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQ------TYSVLIHGLSRNGKMHE 618

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
            F I  ++ +   +   F    +I   C+ G    AS+++  M  +G+ P +V+YN ++ 
Sbjct: 619 AFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILID 678

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           GLCK G   RA  L ++    G  P+  TY  +V+G C   +   A ++L+ ML +    
Sbjct: 679 GLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPP 738

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
              I N+ L   C  +   + L++   ML+ +     ++ NT+I G+CK G+++EA  +L
Sbjct: 739 DAFIYNVILNFCCKEEKFEKALDLFQEMLE-KGFASTVSFNTLIEGYCKSGKLQEANHLL 797

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
            +M+  +F  P+ VT+T++I      G + EA  L  + M +R   P   TY ++L G  
Sbjct: 798 EEMIEKQFI-PNHVTYTSLIDHNCKAGMMGEAKRLWLE-MQERNVMPTAKTYTSLLHGYH 855

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
            +  + E   +F  M+  G+  D  TY ++ID  C    + EA +  D+I+         
Sbjct: 856 NIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVKGMPMSVA 915

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
            Y A+I+ LC+  +  E +  L E+ +SG    +   +V+  G        EA ++LR M
Sbjct: 916 AYDALIQALCKKEEFFEVLKLLNEIGESGFRLGLPTCSVIARGFQIAGNMDEAAEVLRSM 975

Query: 483 RKNGLNPDAVTWRILDKLHGNR 504
            K G   +  T  + D + GN+
Sbjct: 976 VKFGWVSN--TTSLGDLVDGNQ 995



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 88/335 (26%), Positives = 163/335 (48%), Gaps = 2/335 (0%)

Query: 171 TPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARK 230
           +P+ V ++ ++    K G  + A  +      F + PS  +   L+  L   + +E   K
Sbjct: 142 SPNSVIFDMLMDSYRKMGFLVEAVNVFLGPKNFEFRPSLLSCNSLLGDLLKGNKVELFWK 201

Query: 231 VLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFC 290
           V   M + K +         + A C + N  +   VL+ M +  C P+++T N +I G C
Sbjct: 202 VFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKGCSPNLVTYNVIIGGLC 261

Query: 291 KMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG 350
           +   ++EA+++   MV  K   PD  T+  +I G     R +EA  +L + M   G  P 
Sbjct: 262 RARLLDEAIELKRSMV-DKGLVPDLYTYDILINGFCMEKRSREAKLMLLE-MIDVGLKPE 319

Query: 351 IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD 410
            +TYNA++ G  R   +E+A  + + M+  G+ A+   +  +++G+C++ ++++A     
Sbjct: 320 PITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQ 379

Query: 411 DIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLS 470
           +++      D+  Y+ +I+G CR   +  A   L E+    + P ++ Y+V+I+G C+  
Sbjct: 380 EMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCG 439

Query: 471 MKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
             +    ILREM  NGL P+AV +  L   H   G
Sbjct: 440 NLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEG 474



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/231 (22%), Positives = 111/231 (48%), Gaps = 5/231 (2%)

Query: 5    CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
            C   ++ EA+ L  +M  +  +PN V+YT+LI   C+ G M  A +++ EM+   V+P +
Sbjct: 785  CKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTA 844

Query: 65   LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
             TY+ L+ G     ++   + L  ++  +  E + ++     +  ++D+ CREG V E  
Sbjct: 845  KTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMT-----YYVMIDAYCREGNVMEAC 899

Query: 125  RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
            ++ +++          A   +I +LC+        +++  + + G    L + + I  G 
Sbjct: 900  KLKDEILVKGMPMSVAAYDALIQALCKKEEFFEVLKLLNEIGESGFRLGLPTCSVIARGF 959

Query: 185  CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM 235
               G    A ++L   ++FG++ +  +   LV+G    ++ E +  +L+ M
Sbjct: 960  QIAGNMDEAAEVLRSMVKFGWVSNTTSLGDLVDGNQNGANSEDSDNLLKQM 1010



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 88/186 (47%), Gaps = 11/186 (5%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C    +GEA +L+ +M+ R  +P   +YT+L+HGY   G M     +F+EM   G+
Sbjct: 816 IDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGI 875

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEE---EDLSVNNAAFANLVDSLCRE 117
            P+ +TY V++    R  +V  A         ++K+E   + + ++ AA+  L+ +LC++
Sbjct: 876 EPDKMTYYVMIDAYCREGNVMEAC--------KLKDEILVKGMPMSVAAYDALIQALCKK 927

Query: 118 GYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
               EV ++  ++ +         C  +      +G    A+ V+  M K G   +  S 
Sbjct: 928 EEFFEVLKLLNEIGESGFRLGLPTCSVIARGFQIAGNMDEAAEVLRSMVKFGWVSNTTSL 987

Query: 178 NSIVHG 183
             +V G
Sbjct: 988 GDLVDG 993


>gi|302776656|ref|XP_002971480.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
 gi|300160612|gb|EFJ27229.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
          Length = 631

 Score =  218 bits (555), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 144/500 (28%), Positives = 251/500 (50%), Gaps = 12/500 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGH-VPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCG 59
           M  LC + RV +A  LF DM+      P+VV+Y TLI GYC+ G+ D A  +F  ++  G
Sbjct: 96  MHWLCEVRRVEQAMTLFDDMRETCDCAPDVVAYNTLIAGYCKAGDGDRALDMFRRLKQEG 155

Query: 60  VL-PNSLTYSVLVRGVLR-TRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCRE 117
              PN++++  LV  + + +R  +   V    L   +K   D++V N     L+   CR 
Sbjct: 156 SCKPNAVSFDTLVIFLCKMSRATDALAVFQEMLGAGLKA--DVNVCN----TLIHCTCRL 209

Query: 118 GYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
           G + +  R+   M       + F  G ++++ CR+G+ H  +  + + R  G   S V+Y
Sbjct: 210 GMLRQARRLLHHMTAHACARDAFTYGILVNAHCRAGQMHEVASFMELARHDGCALSAVNY 269

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
           N I+ G  + G    A QL E  +    +P   TY +L+  LC    LE+A  + Q    
Sbjct: 270 NFIIQGFIRCGRLAEATQLFESTMTKESVPDVFTYNLLI-ALCKSKQLEEALTLFQEAEQ 328

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
              V      +  + A        + L V   M +  C PD +  N +I+   K G+++E
Sbjct: 329 GGVVLDVFTYSYLMDAFGKAGRAAKALEVFYNMQKAGCMPDTVVYNVLISCLGKQGKVDE 388

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           AL++L DM   K   PD  T+  +I  L + GR ++A +  + +M +R +SP +VTYN +
Sbjct: 389 ALELLEDM-NRKGIMPDCRTYNIVIDVLSSCGRYEKAYSF-FGMMKRRKHSPDVVTYNTL 446

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 417
           L GL +LRR +EA ++F+ M     + D TT+  +ID L ++ ++++A      +V   +
Sbjct: 447 LNGLKKLRRTDEACDLFDEMQANKCMPDLTTFGTLIDTLAKAGRMEDALEQSARLVKMGH 506

Query: 418 IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQ 477
             ++Y+Y A+I G CRSG++ +      ++++    P+ + Y +++ G  +      A +
Sbjct: 507 APNSYIYNALISGFCRSGQVDKGYELFQDMIECSCFPDSITYTILVLGFSRRGHTSMAME 566

Query: 478 ILREMRKNGLNPDAVTWRIL 497
           +L+EM + G  P   T+ +L
Sbjct: 567 LLQEMVREGHTPALATYNVL 586



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 89/391 (22%), Positives = 174/391 (44%), Gaps = 41/391 (10%)

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGL---------------------------------- 170
           M+  +C+ GR    + ++  +R++G+                                  
Sbjct: 24  MVKEVCKLGRTELLAELLAELRQKGVGLSEVTCTECIQAFGRAGDLDAAMGMLDDMRRGN 83

Query: 171 --TPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQF-GYLPSEHTYKVLVEGLCGESDLEK 227
              P  V++ + +H LC+     +A  L ++  +     P    Y  L+ G C   D ++
Sbjct: 84  FCQPDTVAFTAAMHWLCEVRRVEQAMTLFDDMRETCDCAPDVVAYNTLIAGYCKAGDGDR 143

Query: 228 ARKVLQFMLSKKDVDRTRIC-NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVI 286
           A  + + +  +       +  +  +  LC +   T+ L V   ML    + DV   NT+I
Sbjct: 144 ALDMFRRLKQEGSCKPNAVSFDTLVIFLCKMSRATDALAVFQEMLGAGLKADVNVCNTLI 203

Query: 287 NGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
           +  C++G + +A ++L+ M A   CA DA T+  ++      G++ E  + + ++    G
Sbjct: 204 HCTCRLGMLRQARRLLHHMTAHA-CARDAFTYGILVNAHCRAGQMHEVASFM-ELARHDG 261

Query: 347 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
            +   V YN +++G  R  R+ EA ++F   +    V D  TY ++I  LC+S QL+EA 
Sbjct: 262 CALSAVNYNFIIQGFIRCGRLAEATQLFESTMTKESVPDVFTYNLLI-ALCKSKQLEEAL 320

Query: 407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466
             + +      + D + Y+ ++    ++G+  +A+   Y +  +G  P+ V YNV+I   
Sbjct: 321 TLFQEAEQGGVVLDVFTYSYLMDAFGKAGRAAKALEVFYNMQKAGCMPDTVVYNVLISCL 380

Query: 467 CKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            K     EA ++L +M + G+ PD  T+ I+
Sbjct: 381 GKQGKVDEALELLEDMNRKGIMPDCRTYNIV 411


>gi|144923530|gb|ABE80159.2| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 695

 Score =  218 bits (554), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 138/494 (27%), Positives = 245/494 (49%), Gaps = 9/494 (1%)

Query: 8   SRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTY 67
           S    A  L   +   G+ PN+V++ T+I+G+C  G +  A      +   G L +  TY
Sbjct: 104 SHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQFTY 163

Query: 68  SVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIA 127
             L+ G+ +   ++ A      L + M E+  +  N   ++ L+D LC++G+V++   + 
Sbjct: 164 GTLINGLSKNGQIKAA----LHLLQEM-EKSSVQPNLVMYSALIDGLCKDGFVSDALGLC 218

Query: 128 EDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKH 187
             + +   + +      +ID  C  GR    ++++  M +  + P   ++N ++  LCK 
Sbjct: 219 SQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKE 278

Query: 188 GGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC 247
           G  + A  +L    + G  P   TY  L+EG C   ++ +AR++   M+ +         
Sbjct: 279 GRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNY 338

Query: 248 NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA 307
           N+ +   C  K   E + +   +      P + + N++I+G C  GRI    K+L++M  
Sbjct: 339 NVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEM-H 397

Query: 308 GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRV 367
           G    PD VT+  +I  L   GRI EAL +L  +M ++G  P IVTYNA++ G      V
Sbjct: 398 GSAQPPDVVTYNILIDALCKEGRILEALGVLVMMM-KKGVKPNIVTYNAMMDGYCLRNNV 456

Query: 368 EEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAM 427
             AK++FN M+  G+  D   Y ++I+G C++  +DEA   + ++   + I D   Y ++
Sbjct: 457 NVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSL 516

Query: 428 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
           I GLC  G+I      L E+ DSG +P+++ YN+++D  CK     +A  + R++ + G+
Sbjct: 517 IDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQIVE-GI 575

Query: 488 NPDAVT-WRILDKL 500
            PD  T   I+D L
Sbjct: 576 WPDFYTNHAIVDNL 589



 Score =  210 bits (534), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 138/498 (27%), Positives = 238/498 (47%), Gaps = 17/498 (3%)

Query: 6   GLSRVGE---AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           GLS+ G+   A  L  +M+     PN+V Y+ LI G C+ G +  A  +  ++   G+L 
Sbjct: 169 GLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILL 228

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           +++TY+ L+ G       +    L+ K+       E++  ++  F  L+D+LC+EG + E
Sbjct: 229 DAVTYNSLIDGCCSVGRWQEVTQLLTKMVR-----ENVDPDDYTFNILIDALCKEGRILE 283

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
              +   M +     +      +++  C     H A  +   M KRGL P +++YN ++ 
Sbjct: 284 AQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLID 343

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           G CK      A  L +E      +P+  +Y  L++GLC    +   +K+L  M       
Sbjct: 344 GYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPP 403

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
                NI + ALC      E L VLV M++   +P+++T N +++G+C    +  A  + 
Sbjct: 404 DVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIF 463

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
           N MV      PD + +  +I G      + EA+ +L++ M  +   P I +YN+++ GL 
Sbjct: 464 NRMVKSGL-EPDILNYNVLINGYCKTEMVDEAI-VLFKEMRHKNLIPDIASYNSLIDGLC 521

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV---WPSNIH 419
            L R+   +E+ + M   G   D  TY I++D  C++   D+A   +  IV   WP    
Sbjct: 522 NLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQIVEGIWP---- 577

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           D Y   A++  LC+  K+  A   L  L+  G +PN+  Y ++I+  CK     EA  +L
Sbjct: 578 DFYTNHAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINALCKDGSFGEAMLLL 637

Query: 480 REMRKNGLNPDAVTWRIL 497
            +M  N   PDA+T+ I+
Sbjct: 638 SKMEDNDRPPDAITFEII 655



 Score =  198 bits (503), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 133/502 (26%), Positives = 238/502 (47%), Gaps = 15/502 (2%)

Query: 2   DQLCG-LSRVGE---AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRH 57
           D+L G + R+G    A  LF  ++S+G  P++ ++T LI+ Y        A+ +   +  
Sbjct: 59  DKLLGAIVRMGHYPTAISLFTQLQSKGISPSIATFTILINCYFHQSHTAFAFSLLATILK 118

Query: 58  CGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKE--EEDLSVNNAAFANLVDSLC 115
            G  PN +T++ ++ G          N ++FK  +  +    +    +   +  L++ L 
Sbjct: 119 SGYQPNLVTFNTIINGFC-------INGMIFKALDFCQNLLAQGYLFDQFTYGTLINGLS 171

Query: 116 REGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLV 175
           + G +     + ++M +            +ID LC+ G    A  +   + +RG+    V
Sbjct: 172 KNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAV 231

Query: 176 SYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM 235
           +YNS++ G C  G      QLL + ++    P ++T+ +L++ LC E  + +A+ VL  M
Sbjct: 232 TYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMM 291

Query: 236 LSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 295
             + +       N  +   C  +N  E   +   M++   +PDV+  N +I+G+CK   +
Sbjct: 292 SKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMV 351

Query: 296 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN 355
           +EA+ VL   +  K   P   ++ ++I GL N GRI     LL + M      P +VTYN
Sbjct: 352 DEAM-VLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDE-MHGSAQPPDVVTYN 409

Query: 356 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP 415
            ++  L +  R+ EA  V   M+  GV  +  TY  ++DG C  N ++ AK  ++ +V  
Sbjct: 410 ILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKS 469

Query: 416 SNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREA 475
               D   Y  +I G C++  + EA+    E+    + P+I  YN +IDG C L      
Sbjct: 470 GLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHV 529

Query: 476 YQILREMRKNGLNPDAVTWRIL 497
            ++L EM  +G +PD +T+ IL
Sbjct: 530 QELLDEMCDSGQSPDVITYNIL 551



 Score =  178 bits (452), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 126/493 (25%), Positives = 219/493 (44%), Gaps = 42/493 (8%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C    V +A   F  M      P    +  L+    R G    A  +F +++  G+ P+ 
Sbjct: 31  CRFRNVDDAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSI 90

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
            T+++L+           A  L+  + +   +      N   F  +++  C  G + +  
Sbjct: 91  ATFTILINCYFHQSHTAFAFSLLATILKSGYQP-----NLVTFNTIINGFCINGMIFKAL 145

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
              +++     + ++F  G +I+ L ++G+   A  ++  M K  + P+LV Y++++ GL
Sbjct: 146 DFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGL 205

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
           CK G    A  L  +  + G L    TY  L++G C                    V R 
Sbjct: 206 CKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCS-------------------VGRW 246

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
           +                E+  +L  M++    PD  T N +I+  CK GRI EA  VL  
Sbjct: 247 Q----------------EVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLA- 289

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
           M++ +   PD VT+  ++ G  +   + EA  L +  M +RG  P ++ YN ++ G  + 
Sbjct: 290 MMSKRGEKPDIVTYNALMEGYCSRENVHEAREL-FNRMVKRGLEPDVLNYNVLIDGYCKT 348

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY 424
           + V+EA  +F  +    +V    +Y  +IDGLC S ++   K+  D++   +   D   Y
Sbjct: 349 KMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTY 408

Query: 425 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484
             +I  LC+ G+I EA+  L  ++  GV PNIV YN ++DG C  +    A  I   M K
Sbjct: 409 NILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVK 468

Query: 485 NGLNPDAVTWRIL 497
           +GL PD + + +L
Sbjct: 469 SGLEPDILNYNVL 481



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 110/413 (26%), Positives = 204/413 (49%), Gaps = 8/413 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   R+ EA  +   M  RG  P++V+Y  L+ GYC    +  A ++F+ M   G+
Sbjct: 272 IDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGL 331

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ L Y+VL+ G  +T+ V+ A VL  +L  +     +L    A++ +L+D LC  G +
Sbjct: 332 EPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNK-----NLVPTIASYNSLIDGLCNSGRI 386

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           + V ++ ++M       +      +ID+LC+ GR   A  V+ +M K+G+ P++V+YN++
Sbjct: 387 SHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAM 446

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G C       A  +    ++ G  P    Y VL+ G C    +++A  + + M  K  
Sbjct: 447 MDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNL 506

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           +      N  +  LC +     +  +L  M  +   PDVIT N +++ FCK    ++A+ 
Sbjct: 507 IPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAIS 566

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +   +V G +  PD  T   I+  L    +++ A + L  ++   G SP + TY  ++  
Sbjct: 567 LFRQIVEGIW--PDFYTNHAIVDNLCKGEKLKMAEDALKHLL-MHGCSPNVQTYTILINA 623

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413
           L +     EA  + + M       D+ T+ I+I  L + N+ D+A++  ++++
Sbjct: 624 LCKDGSFGEAMLLLSKMEDNDRPPDAITFEIIIGVLLQRNETDKAEKLREEMI 676



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/307 (24%), Positives = 135/307 (43%), Gaps = 6/307 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   R+    KL  +M      P+VV+Y  LI   C+ G +  A  V   M   GV
Sbjct: 377 IDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGV 436

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +TY+ ++ G     +V  A  +  ++ +   E + L+ N      L++  C+   V
Sbjct: 437 KPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNV-----LINGYCKTEMV 491

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E   + ++M     + +  +   +ID LC  GR      ++  M   G +P +++YN +
Sbjct: 492 DEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNIL 551

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +   CK     +A  L  + ++ G  P  +T   +V+ LC    L+ A   L+ +L    
Sbjct: 552 LDAFCKTQPFDKAISLFRQIVE-GIWPDFYTNHAIVDNLCKGEKLKMAEDALKHLLMHGC 610

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
               +   I + ALC   +  E + +L  M      PD IT   +I    +    ++A K
Sbjct: 611 SPNVQTYTILINALCKDGSFGEAMLLLSKMEDNDRPPDAITFEIIIGVLLQRNETDKAEK 670

Query: 301 VLNDMVA 307
           +  +M+A
Sbjct: 671 LREEMIA 677



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 112/243 (46%), Gaps = 37/243 (15%)

Query: 264 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF 323
            ++L  +L++  QP+++T NT+INGFC  G I +AL    +++A  +   D  T+ T+I 
Sbjct: 110 FSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLF-DQFTYGTLIN 168

Query: 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 383
           GL   G+I+ AL+LL Q M +    P +V Y+A+                          
Sbjct: 169 GLSKNGQIKAALHLL-QEMEKSSVQPNLVMYSAL-------------------------- 201

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
                    IDGLC+   + +A      I     + D   Y ++I G C  G+  E    
Sbjct: 202 ---------IDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQL 252

Query: 444 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGN 503
           L ++V   V P+   +N++ID  CK     EA  +L  M K G  PD VT+  L + + +
Sbjct: 253 LTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCS 312

Query: 504 RGN 506
           R N
Sbjct: 313 REN 315


>gi|356523285|ref|XP_003530271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Glycine max]
          Length = 703

 Score =  218 bits (554), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 142/486 (29%), Positives = 243/486 (50%), Gaps = 18/486 (3%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRH---CGVLPNSLTYSVLVRGVLR 76
           M  RG   NV +   ++ G+CR+G+ D A  +F +M+    C V+P+ +TY+ LV G  +
Sbjct: 103 MTKRGFGVNVYNLNLVLKGFCRSGQCDKAMSLFSQMKRNYDC-VVPDCVTYNTLVNGFCK 161

Query: 77  TRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSV 136
            + +  A VL    +E MK+  D   N   ++ L+D  C+ G V E   + E+M +    
Sbjct: 162 AKRLAEARVL----FEAMKKGGDCRPNLVTYSVLIDCYCKSGEVGEGLGLLEEMEREGLK 217

Query: 137 NEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQL 196
            + F    +I + C  G       +   M +R ++P++V+Y+ ++ GL + G    A ++
Sbjct: 218 ADVFVYSSLISAFCGEGDIETGRELFDEMLRRKVSPNVVTYSCLMQGLGRTGRWREASEM 277

Query: 197 LEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCL 256
           L++    G  P    Y VL +GLC       A KVL  M+ K +   T   N+ +  LC 
Sbjct: 278 LKDMTARGVRPDVVAYTVLADGLCKNGRAGDAIKVLDLMVQKGEEPGTLTYNVVVNGLCK 337

Query: 257 IKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKF-CAPDA 315
                +   V+  M++   +PD +T NT++ G C  G+I EA+ +   +++ KF   PD 
Sbjct: 338 EDRMDDAFGVVEMMVKKGKKPDAVTYNTLLKGLCGAGKIHEAMDLWKLLLSEKFHVKPDV 397

Query: 316 VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN 375
            T   +I GL   GR+ +A   ++  M + G    IVTYN ++ G    R++ EA +++ 
Sbjct: 398 FTCNNLIQGLCKEGRVHDAAR-IHSSMVEMGLQGNIVTYNFLIEGYLAARKLIEALKLWK 456

Query: 376 CMLGIGVVADSTTYAIVIDGLCESNQLDEAK----RFWDDIVWPSNIHDNYVYAAMIKGL 431
             +  G   +S TY+++I+GLC+   L  A+    +  D  + P+ I     Y A++  L
Sbjct: 457 YAVESGFSPNSMTYSVMINGLCKMQMLSVARGLFCKMKDSGIRPTVID----YNALMTSL 512

Query: 432 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 491
           CR   + +A     E+ +     ++V +N++IDG  K    + A ++L EM    L PDA
Sbjct: 513 CREDSLEQARSLFQEMRNVNHNVDVVSFNIIIDGTLKAGDVKSAKELLSEMFMMDLVPDA 572

Query: 492 VTWRIL 497
           VT+ IL
Sbjct: 573 VTFSIL 578



 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 143/510 (28%), Positives = 252/510 (49%), Gaps = 15/510 (2%)

Query: 4   LCGLSRVGEAHK---LFFDMKSRGH--VPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHC 58
           L G  R G+  K   LF  MK      VP+ V+Y TL++G+C+   +  A  +F+ M+  
Sbjct: 119 LKGFCRSGQCDKAMSLFSQMKRNYDCVVPDCVTYNTLVNGFCKAKRLAEARVLFEAMKKG 178

Query: 59  G-VLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCRE 117
           G   PN +TYSVL+    ++ +V         L E M E E L  +   +++L+ + C E
Sbjct: 179 GDCRPNLVTYSVLIDCYCKSGEVGEG----LGLLEEM-EREGLKADVFVYSSLISAFCGE 233

Query: 118 GYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
           G +     + ++M + K          ++  L R+GR   AS ++  M  RG+ P +V+Y
Sbjct: 234 GDIETGRELFDEMLRRKVSPNVVTYSCLMQGLGRTGRWREASEMLKDMTARGVRPDVVAY 293

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
             +  GLCK+G    A ++L+  +Q G  P   TY V+V GLC E  ++ A  V++ M+ 
Sbjct: 294 TVLADGLCKNGRAGDAIKVLDLMVQKGEEPGTLTYNVVVNGLCKEDRMDDAFGVVEMMVK 353

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQ--CQPDVITLNTVINGFCKMGRI 295
           K         N  L+ LC      E +++   +L  +   +PDV T N +I G CK GR+
Sbjct: 354 KGKKPDAVTYNTLLKGLCGAGKIHEAMDLWKLLLSEKFHVKPDVFTCNNLIQGLCKEGRV 413

Query: 296 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN 355
            +A ++ + MV       + VT+  +I G L   ++ EAL L ++   + G+SP  +TY+
Sbjct: 414 HDAARIHSSMVEMGL-QGNIVTYNFLIEGYLAARKLIEALKL-WKYAVESGFSPNSMTYS 471

Query: 356 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP 415
            ++ GL +++ +  A+ +F  M   G+      Y  ++  LC  + L++A+  + ++   
Sbjct: 472 VMINGLCKMQMLSVARGLFCKMKDSGIRPTVIDYNALMTSLCREDSLEQARSLFQEMRNV 531

Query: 416 SNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREA 475
           ++  D   +  +I G  ++G +  A   L E+    + P+ V ++++I+   KL M  EA
Sbjct: 532 NHNVDVVSFNIIIDGTLKAGDVKSAKELLSEMFMMDLVPDAVTFSILINRFSKLGMLDEA 591

Query: 476 YQILREMRKNGLNPDAVTWRILDKLHGNRG 505
             +  +M   G  P  V +  L K +G +G
Sbjct: 592 MGLYEKMVSCGHVPGVVVFDSLLKGYGLKG 621



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 130/520 (25%), Positives = 243/520 (46%), Gaps = 45/520 (8%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHV-PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
            C   R+ EA  LF  MK  G   PN+V+Y+ LI  YC++GE+     + +EM   G+  
Sbjct: 159 FCKAKRLAEARVLFEAMKKGGDCRPNLVTYSVLIDCYCKSGEVGEGLGLLEEMEREGLKA 218

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           +   YS L+       D+E    L  ++  R      +S N   ++ L+  L R G   E
Sbjct: 219 DVFVYSSLISAFCGEGDIETGRELFDEMLRR-----KVSPNVVTYSCLMQGLGRTGRWRE 273

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
              + +DM       +  A   + D LC++GR   A +V+ +M ++G  P  ++YN +V+
Sbjct: 274 ASEMLKDMTARGVRPDVVAYTVLADGLCKNGRAGDAIKVLDLMVQKGEEPGTLTYNVVVN 333

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           GLCK      A+ ++E  ++ G  P   TY  L++GLCG   + +A  + + +LS+K   
Sbjct: 334 GLCKEDRMDDAFGVVEMMVKKGKKPDAVTYNTLLKGLCGAGKIHEAMDLWKLLLSEKFHV 393

Query: 243 RTRI--CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           +  +  CN  ++ LC      +   +   M++   Q +++T N +I G+    ++ EALK
Sbjct: 394 KPDVFTCNNLIQGLCKEGRVHDAARIHSSMVEMGLQGNIVTYNFLIEGYLAARKLIEALK 453

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL-- 358
           +    V   F +P+++T++ +I GL  +  +  A  L  + M   G  P ++ YNA++  
Sbjct: 454 LWKYAVESGF-SPNSMTYSVMINGLCKMQMLSVARGLFCK-MKDSGIRPTVIDYNALMTS 511

Query: 359 ----------RGLFRLRR-----------------------VEEAKEVFNCMLGIGVVAD 385
                     R LF+  R                       V+ AKE+ + M  + +V D
Sbjct: 512 LCREDSLEQARSLFQEMRNVNHNVDVVSFNIIIDGTLKAGDVKSAKELLSEMFMMDLVPD 571

Query: 386 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY 445
           + T++I+I+   +   LDEA   ++ +V   ++    V+ +++KG    G+  + +  L+
Sbjct: 572 AVTFSILINRFSKLGMLDEAMGLYEKMVSCGHVPGVVVFDSLLKGYGLKGETEKIISLLH 631

Query: 446 ELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN 485
           ++ D  V  +    + ++   C +S   +  +IL +  + 
Sbjct: 632 QMADKDVVLDSKLTSTILACLCHMSRNLDVEKILPKFSQQ 671



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 127/510 (24%), Positives = 226/510 (44%), Gaps = 45/510 (8%)

Query: 27  PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVL 86
           P+  + +TLI    +  + D    V+ +M    VLP   + S L    + T     A  +
Sbjct: 40  PSEPACSTLIDNLRKARQYDAVVSVYHKMVSALVLPRFTSLSALTESFVNTHHPSFAFSV 99

Query: 87  MFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKS--VNEEFACGH 144
           +  + +R        VN      ++   CR G  ++   +   M +     V +      
Sbjct: 100 LSLMTKR-----GFGVNVYNLNLVLKGFCRSGQCDKAMSLFSQMKRNYDCVVPDCVTYNT 154

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRG-LTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQF 203
           +++  C++ R   A  +   M+K G   P+LV+Y+ ++   CK G       LLEE  + 
Sbjct: 155 LVNGFCKAKRLAEARVLFEAMKKGGDCRPNLVTYSVLIDCYCKSGEVGEGLGLLEEMERE 214

Query: 204 GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK----------------DVDRTRIC 247
           G       Y  L+   CGE D+E  R++   ML +K                   R R  
Sbjct: 215 GLKADVFVYSSLISAFCGEGDIETGRELFDEMLRRKVSPNVVTYSCLMQGLGRTGRWREA 274

Query: 248 NIYLR-------------------ALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVING 288
           +  L+                    LC      + + VL  M+Q   +P  +T N V+NG
Sbjct: 275 SEMLKDMTARGVRPDVVAYTVLADGLCKNGRAGDAIKVLDLMVQKGEEPGTLTYNVVVNG 334

Query: 289 FCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGY- 347
            CK  R+++A  V+ +M+  K   PDAVT+ T++ GL   G+I EA++L   ++ ++ + 
Sbjct: 335 LCKEDRMDDAFGVV-EMMVKKGKKPDAVTYNTLLKGLCGAGKIHEAMDLWKLLLSEKFHV 393

Query: 348 SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKR 407
            P + T N +++GL +  RV +A  + + M+ +G+  +  TY  +I+G   + +L EA +
Sbjct: 394 KPDVFTCNNLIQGLCKEGRVHDAARIHSSMVEMGLQGNIVTYNFLIEGYLAARKLIEALK 453

Query: 408 FWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGAC 467
            W   V      ++  Y+ MI GLC+   +  A     ++ DSG+ P ++ YN ++   C
Sbjct: 454 LWKYAVESGFSPNSMTYSVMINGLCKMQMLSVARGLFCKMKDSGIRPTVIDYNALMTSLC 513

Query: 468 KLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           +     +A  + +EMR    N D V++ I+
Sbjct: 514 REDSLEQARSLFQEMRNVNHNVDVVSFNII 543



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/207 (22%), Positives = 85/207 (41%), Gaps = 5/207 (2%)

Query: 295 IEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTY 354
           + +A+ + +  +     +P +    + +   L   R  +A+  +Y  M      P   + 
Sbjct: 21  LSDAVSLFHRTIDNDPTSPPSEPACSTLIDNLRKARQYDAVVSVYHKMVSALVLPRFTSL 80

Query: 355 NAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV- 413
           +A+            A  V + M   G   +     +V+ G C S Q D+A   +  +  
Sbjct: 81  SALTESFVNTHHPSFAFSVLSLMTKRGFGVNVYNLNLVLKGFCRSGQCDKAMSLFSQMKR 140

Query: 414 -WPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG--VTPNIVCYNVVIDGACKLS 470
            +   + D   Y  ++ G C++ ++ EA   L+E +  G    PN+V Y+V+ID  CK  
Sbjct: 141 NYDCVVPDCVTYNTLVNGFCKAKRLAEA-RVLFEAMKKGGDCRPNLVTYSVLIDCYCKSG 199

Query: 471 MKREAYQILREMRKNGLNPDAVTWRIL 497
              E   +L EM + GL  D   +  L
Sbjct: 200 EVGEGLGLLEEMEREGLKADVFVYSSL 226


>gi|449520325|ref|XP_004167184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  217 bits (553), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 138/496 (27%), Positives = 248/496 (50%), Gaps = 40/496 (8%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC ++R+ E    F  +  RG+ PN+V+Y TLI G C    +  A ++F  M+  G  P+
Sbjct: 114 LCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPD 173

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY  L++G+  T ++  A     KL + M                         +N++
Sbjct: 174 VVTYGTLIKGLCGTGNINIA----LKLHQEM-------------------------LNDI 204

Query: 124 FRIAED-MPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
            R   +  P   + N       ++D LC+ GR   A ++   M+ +G+ PS++SYNS++H
Sbjct: 205 SRYEINCKPNVITYNI------IVDGLCKVGREDEAKQLFEEMKTQGMIPSIISYNSLIH 258

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           G C  G    + +LL+E +  G  P   T+ VL++ LC E  + +A+K+L  M+    V 
Sbjct: 259 GFCCAGKWEESKRLLDEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVP 318

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
                N  +   C++ +      + V M    C+PDVI+ N +ING+ K  ++EEA+K+ 
Sbjct: 319 DLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLY 378

Query: 303 NDM-VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
           N+M + GK   P+ +T+ +++ G+   G++ +A   L+ VM   G +    TY   L GL
Sbjct: 379 NEMLLVGK--RPNVITYDSLLKGIFLAGKVDDA-KKLFSVMKAHGIAENSYTYGIFLDGL 435

Query: 362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
            +   + EA ++F  +       +      +IDGLC++ +L+ A   ++ +    +  + 
Sbjct: 436 CKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNV 495

Query: 422 YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
             Y  MI G CR G++ +A   + ++  +G TP+I+ YN ++ G  + +   E  Q+L  
Sbjct: 496 VTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITYNTLMRGFYESNKLEEVVQLLHR 555

Query: 482 MRKNGLNPDAVTWRIL 497
           M +  ++PDA+T  I+
Sbjct: 556 MAQKDVSPDAITCSIV 571



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 116/437 (26%), Positives = 208/437 (47%), Gaps = 38/437 (8%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRH------ 57
           LC   R+ EA +LF  M+  G  P+VV+Y TLI G C TG +++A K+  EM +      
Sbjct: 149 LCMEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYE 208

Query: 58  CGVLPNSLTYSVLVRGVLRTRDVERANVLMFKL------------------------WER 93
               PN +TY+++V G+ +    + A  L  ++                        WE 
Sbjct: 209 INCKPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEE 268

Query: 94  MKE------EEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMID 147
            K       ++ L  +   F  L+D+LC+EG V E  ++   M +   V +      +I+
Sbjct: 269 SKRLLDEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIE 328

Query: 148 SLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLP 207
             C  G  + A  +   M  +G  P ++SYN +++G  K      A +L  E +  G  P
Sbjct: 329 GFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRP 388

Query: 208 SEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVL 267
           +  TY  L++G+     ++ A+K+   M +    + +    I+L  LC      E + + 
Sbjct: 389 NVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLF 448

Query: 268 VFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLN 327
             +  +  + ++  LN +I+G CK G++E A ++  + ++ +   P+ VT+T +I G   
Sbjct: 449 TELKSSNFKLEIENLNCLIDGLCKAGKLETAWELF-EKLSNEGHEPNVVTYTIMIHGFCR 507

Query: 328 VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADST 387
            G++ +A N+L Q M   G +P I+TYN ++RG +   ++EE  ++ + M    V  D+ 
Sbjct: 508 EGQVDKA-NVLIQKMEANGCTPDIITYNTLMRGFYESNKLEEVVQLLHRMAQKDVSPDAI 566

Query: 388 TYAIVIDGLCESNQLDE 404
           T +IV+D L +  +  E
Sbjct: 567 TCSIVVDMLSKDEKYQE 583



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 101/357 (28%), Positives = 173/357 (48%), Gaps = 8/357 (2%)

Query: 150 CRSGRNHG--ASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLP 207
           C++G      A    ++M +   TPSL S+N ++ GL K     + + L  +    G   
Sbjct: 43  CKTGNVTATHALHFFHLMMRSTPTPSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSS 102

Query: 208 SEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVL 267
              T  +L+  LC  + L +       +L +         N  ++ LC+    +E   + 
Sbjct: 103 DRCTLNILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLF 162

Query: 268 VFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV----LNDMVAGKF-CAPDAVTFTTII 322
           + M +  C PDV+T  T+I G C  G I  ALK+    LND+   +  C P+ +T+  I+
Sbjct: 163 LRMQKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIV 222

Query: 323 FGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGV 382
            GL  VGR  EA   L++ M  +G  P I++YN+++ G     + EE+K + + ML  G+
Sbjct: 223 DGLCKVGREDEA-KQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEESKRLLDEMLDQGL 281

Query: 383 VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVH 442
             D  T+ ++ID LC+  ++ EAK+    ++    + D   Y ++I+G C  G ++ A  
Sbjct: 282 QPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARE 341

Query: 443 FLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
               +   G  P+++ YNV+I+G  K     EA ++  EM   G  P+ +T+  L K
Sbjct: 342 LFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLK 398



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 94/350 (26%), Positives = 165/350 (47%), Gaps = 49/350 (14%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   +V EA KL   M   G VP++V+Y +LI G+C  G+++ A ++F  M   G 
Sbjct: 292 IDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGC 351

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSV----NNAAFANLVDSLCR 116
            P+ ++Y+VL+ G  +T  VE A     KL+  M     L V    N   + +L+  +  
Sbjct: 352 EPDVISYNVLINGYSKTLKVEEA----MKLYNEM-----LLVGKRPNVITYDSLLKGIFL 402

Query: 117 EGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVS 176
            G V++  ++   M         +  G  +D LC++     A ++   ++       + +
Sbjct: 403 AGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIEN 462

Query: 177 YNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFML 236
            N ++ GLCK G    A++L E+    G+ P+  TY +++ G C E  ++KA  ++Q M 
Sbjct: 463 LNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKME 522

Query: 237 SKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIE 296
           +                                     C PD+IT NT++ GF +  ++E
Sbjct: 523 ANG-----------------------------------CTPDIITYNTLMRGFYESNKLE 547

Query: 297 EALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
           E +++L+ M A K  +PDA+T + ++  L    + QE L+LL +   Q+G
Sbjct: 548 EVVQLLHRM-AQKDVSPDAITCSIVVDMLSKDEKYQECLHLLPRFPIQKG 596



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 117/273 (42%), Gaps = 30/273 (10%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C +  +  A +LF  M S+G  P+V+SY  LI+GY +T +++ A K+++EM   G 
Sbjct: 327 IEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGK 386

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFK-------------------------LWERMK 95
            PN +TY  L++G+     V+ A  L                            L+E MK
Sbjct: 387 RPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMK 446

Query: 96  EEEDLSVNNAAFA-----NLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC 150
              +L  +N          L+D LC+ G +   + + E +              MI   C
Sbjct: 447 LFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFC 506

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
           R G+   A+ ++  M   G TP +++YN+++ G  +        QLL    Q    P   
Sbjct: 507 REGQVDKANVLIQKMEANGCTPDIITYNTLMRGFYESNKLEEVVQLLHRMAQKDVSPDAI 566

Query: 211 TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           T  ++V+ L  +   ++   +L     +K VD+
Sbjct: 567 TCSIVVDMLSKDEKYQECLHLLPRFPIQKGVDK 599



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 76/144 (52%), Gaps = 5/144 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   ++  A +LF  + + GH PNVV+YT +IHG+CR G++D A  +  +M   G 
Sbjct: 467 IDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGC 526

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TY+ L+RG   +  +E     + +L  RM  ++D+S +    + +VD L ++   
Sbjct: 527 TPDIITYNTLMRGFYESNKLEE----VVQLLHRMA-QKDVSPDAITCSIVVDMLSKDEKY 581

Query: 121 NEVFRIAEDMPQGKSVNEEFACGH 144
            E   +    P  K V++     H
Sbjct: 582 QECLHLLPRFPIQKGVDKHLLMTH 605



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 71/169 (42%), Gaps = 35/169 (20%)

Query: 338 LYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLC 397
            + +M +   +P + ++N +L GL +++   +   ++N M   G+ +D  T  I+++ LC
Sbjct: 56  FFHLMMRSTPTPSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCTLNILLNCLC 115

Query: 398 ESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIV 457
             N+L E                   +AA    L R                 G +PNIV
Sbjct: 116 NVNRLREG------------------FAAFAGILRR-----------------GYSPNIV 140

Query: 458 CYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
            YN +I G C      EA ++   M+K G  PD VT+  L K     GN
Sbjct: 141 TYNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGN 189


>gi|32527606|gb|AAP86200.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
          Length = 654

 Score =  217 bits (553), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 139/514 (27%), Positives = 248/514 (48%), Gaps = 31/514 (6%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M   C  S++  A   F  +   G  P VV+++TL+HG C    +  A  +F +M     
Sbjct: 120 MKCFCSCSKLPFALSTFGKITKLGFHPTVVTFSTLLHGLCVEDRISEALDLFHQM----C 175

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +T++ L+ G+ R   V  A  L+ ++ E     + L  N   +  +VD +C+ G  
Sbjct: 176 KPNVVTFTTLMNGLCREGRVVEAVALLDRMLE-----DGLQPNQITYGTIVDGMCKMGDT 230

Query: 121 NEVFRIAEDMPQGKSVN--------EEFACGHMIDSLCRSGRNHGASRVVYVM-RKRGLT 171
                +   M +   +         E   C  MI+  C SGR   A +++  M  ++ ++
Sbjct: 231 VSALNLLRKMEEVSHIKPNVVIWPLERRTC--MINGFCSSGRWSEAQQLLQEMLERKKIS 288

Query: 172 PSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKV 231
           P +V+YN++++   K G    A +L +E +  G +PS  TY  +++G C ++ L+ A  +
Sbjct: 289 PDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPSTITYSSMIDGFCKQNRLDAAEHM 348

Query: 232 LQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK 291
              M +K         N  +   C  K   + + +L  M +     + IT  T+I+GFC+
Sbjct: 349 FYLMATKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQ 408

Query: 292 MGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVM--------- 342
           +G +  A  +L +MV+   C P+ VT  T++ GL + G++++AL +   +          
Sbjct: 409 VGDLNAAQDLLQEMVSSGVC-PNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDAS 467

Query: 343 -PQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ 401
            P  G  P + TYN ++ GL    +  EA+E++  M   G+V D+ TY  VI GLC+ ++
Sbjct: 468 HPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYNSVIHGLCKQSR 527

Query: 402 LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNV 461
           LDEA + +D +   S   +   +  +I G C++G++ + +    E+   G+  N + Y  
Sbjct: 528 LDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYIT 587

Query: 462 VIDGACKLSMKREAYQILREMRKNGLNPDAVTWR 495
           +I G  K+     A  I +EM  +G+ PD +T R
Sbjct: 588 LIHGFRKVGNINGALDIFQEMMASGVYPDTITIR 621



 Score =  194 bits (493), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 132/527 (25%), Positives = 237/527 (44%), Gaps = 87/527 (16%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R+ EA  LF  M      PNVV++TTL++G CR G +  A  + D M   G+ PN
Sbjct: 158 LCVEDRISEALDLFHQMCK----PNVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPN 213

Query: 64  SLTYSVLVRGVLRTRDVERA---------------NVLMFKL---------------W-- 91
            +TY  +V G+ +  D   A               NV+++ L               W  
Sbjct: 214 QITYGTIVDGMCKMGDTVSALNLLRKMEEVSHIKPNVVIWPLERRTCMINGFCSSGRWSE 273

Query: 92  -----ERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMI 146
                + M E + +S +   +  L+++  +EG   E   + ++M     +        MI
Sbjct: 274 AQQLLQEMLERKKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPSTITYSSMI 333

Query: 147 DSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL 206
           D  C+  R   A  + Y+M  +G +P ++++N+++ G C+        +LL E  + G +
Sbjct: 334 DGFCKQNRLDAAEHMFYLMATKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLV 393

Query: 207 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 266
            +  TY  L+ G C   DL  A+ +LQ M+S      + +C                   
Sbjct: 394 ANTITYTTLIHGFCQVGDLNAAQDLLQEMVS------SGVC------------------- 428

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKF----------CAPDAV 316
                     P+V+T NT+++G C  G++++AL++   M   K             PD  
Sbjct: 429 ----------PNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASHPFNGVEPDVQ 478

Query: 317 TFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNC 376
           T+  +I GL+N G+  EA  L Y+ MP RG  P  +TYN+V+ GL +  R++EA ++F+ 
Sbjct: 479 TYNILISGLINEGKFLEAEEL-YEEMPHRGIVPDTITYNSVIHGLCKQSRLDEATQMFDS 537

Query: 377 MLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGK 436
           M       +  T+  +I+G C++ ++D+    + ++     + +   Y  +I G  + G 
Sbjct: 538 MGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLIHGFRKVGN 597

Query: 437 IHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           I+ A+    E++ SGV P+ +    ++ G       + A  +L +++
Sbjct: 598 INGALDIFQEMMASGVYPDTITIRNMLTGLWSKEELKRAVAMLEDLQ 644



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 132/505 (26%), Positives = 229/505 (45%), Gaps = 31/505 (6%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           +A  LF DM     +P+V+ +  L+    R G +DV   +  +M    V  N+ ++++L+
Sbjct: 61  DAIDLFGDMVRSRPLPSVIDFCKLMGVVVRMGRLDVVISLHRKMEMRRVPCNAYSFTILM 120

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP 131
           +       +  A     K+ +              F+ L+  LC E  ++E   +   M 
Sbjct: 121 KCFCSCSKLPFALSTFGKITKL-----GFHPTVVTFSTLLHGLCVEDRISEALDLFHQMC 175

Query: 132 QGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCM 191
           +   V   F    +++ LCR GR   A  ++  M + GL P+ ++Y +IV G+CK G  +
Sbjct: 176 KPNVVT--FTT--LMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTV 231

Query: 192 RAYQLLEEGIQFGYL-------PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
            A  LL +  +  ++       P E     ++ G C      +A+++LQ ML +K +   
Sbjct: 232 SALNLLRKMEEVSHIKPNVVIWPLERR-TCMINGFCSSGRWSEAQQLLQEMLERKKISPD 290

Query: 245 RIC-NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
            +  N  + A        E   +   ML     P  IT +++I+GFCK  R++ A  +  
Sbjct: 291 VVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPSTITYSSMIDGFCKQNRLDAAEHMFY 350

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            ++A K C+PD +TF T+I G     R+ + + LL++ M + G     +TY  ++ G  +
Sbjct: 351 -LMATKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHE-MTEAGLVANTITYTTLIHGFCQ 408

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD---------DIVW 414
           +  +  A+++   M+  GV  +  T   ++DGLC++ +L +A   +          D   
Sbjct: 409 VGDLNAAQDLLQEMVSSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASH 468

Query: 415 PSN--IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMK 472
           P N    D   Y  +I GL   GK  EA     E+   G+ P+ + YN VI G CK S  
Sbjct: 469 PFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYNSVIHGLCKQSRL 528

Query: 473 REAYQILREMRKNGLNPDAVTWRIL 497
            EA Q+   M     +P+ VT+  L
Sbjct: 529 DEATQMFDSMGSKSFSPNVVTFTTL 553



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 92/308 (29%), Positives = 159/308 (51%), Gaps = 10/308 (3%)

Query: 202 QFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPT 261
           + G+ P+  T+  L+ GLC E  + +A  +   M     V  T + N     LC      
Sbjct: 141 KLGFHPTVVTFSTLLHGLCVEDRISEALDLFHQMCKPNVVTFTTLMN----GLCREGRVV 196

Query: 262 ELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTF--- 318
           E + +L  ML+   QP+ IT  T+++G CKMG    AL +L  M       P+ V +   
Sbjct: 197 EAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSHIKPNVVIWPLE 256

Query: 319 --TTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNC 376
             T +I G  + GR  EA  LL +++ ++  SP +VTYNA++    +  +  EA+E+++ 
Sbjct: 257 RRTCMINGFCSSGRWSEAQQLLQEMLERKKISPDVVTYNALINAFVKEGKFFEAEELYDE 316

Query: 377 MLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGK 436
           ML  G++  + TY+ +IDG C+ N+LD A+  +  +       D   +  +I G CR+ +
Sbjct: 317 MLPRGIIPSTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPDIITFNTLIAGYCRAKR 376

Query: 437 IHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWR- 495
           + + +  L+E+ ++G+  N + Y  +I G C++     A  +L+EM  +G+ P+ VT   
Sbjct: 377 VDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMVSSGVCPNVVTCNT 436

Query: 496 ILDKLHGN 503
           +LD L  N
Sbjct: 437 LLDGLCDN 444



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 90/347 (25%), Positives = 159/347 (45%), Gaps = 17/347 (4%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           EA +L+ +M  RG +P+ ++Y+++I G+C+   +D A  +F  M   G  P+ +T++ L+
Sbjct: 309 EAEELYDEMLPRGIIPSTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPDIITFNTLI 368

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP 131
            G  R + V+       KL   M E   L  N   +  L+   C+ G +N    + ++M 
Sbjct: 369 AGYCRAKRVDDG----IKLLHEMTEA-GLVANTITYTTLIHGFCQVGDLNAAQDLLQEMV 423

Query: 132 QGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKR-----------GLTPSLVSYNSI 180
                     C  ++D LC +G+   A  +   M+K            G+ P + +YN +
Sbjct: 424 SSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASHPFNGVEPDVQTYNIL 483

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GL   G  + A +L EE    G +P   TY  ++ GLC +S L++A ++   M SK  
Sbjct: 484 ISGLINEGKFLEAEELYEEMPHRGIVPDTITYNSVIHGLCKQSRLDEATQMFDSMGSKSF 543

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                     +   C      + L +   M +     + IT  T+I+GF K+G I  AL 
Sbjct: 544 SPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLIHGFRKVGNINGALD 603

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGY 347
           +  +M+A     PD +T   ++ GL +   ++ A+ +L  +    GY
Sbjct: 604 IFQEMMASGV-YPDTITIRNMLTGLWSKEELKRAVAMLEDLQMSVGY 649



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/347 (24%), Positives = 170/347 (48%), Gaps = 18/347 (5%)

Query: 164 VMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLP-SEHTYKVLVEGLCGE 222
           ++R R L PS++ +  ++ G+    G +     L   ++   +P + +++ +L++  C  
Sbjct: 69  MVRSRPL-PSVIDFCKLM-GVVVRMGRLDVVISLHRKMEMRRVPCNAYSFTILMKCFCSC 126

Query: 223 SDLEKARKVLQFMLSKKDVDRTRIC-NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVIT 281
           S L  A       ++K     T +  +  L  LC+    +E L+    +    C+P+V+T
Sbjct: 127 SKLPFALSTFG-KITKLGFHPTVVTFSTLLHGLCVEDRISEALD----LFHQMCKPNVVT 181

Query: 282 LNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQV 341
             T++NG C+ GR+ EA+ +L+ M+      P+ +T+ TI+ G+  +G    ALNLL ++
Sbjct: 182 FTTLMNGLCREGRVVEAVALLDRMLEDGL-QPNQITYGTIVDGMCKMGDTVSALNLLRKM 240

Query: 342 MPQRGYSPGIVTY-----NAVLRGLFRLRRVEEAKEVFNCMLGIGVVA-DSTTYAIVIDG 395
                  P +V +       ++ G     R  EA+++   ML    ++ D  TY  +I+ 
Sbjct: 241 EEVSHIKPNVVIWPLERRTCMINGFCSSGRWSEAQQLLQEMLERKKISPDVVTYNALINA 300

Query: 396 LCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN 455
             +  +  EA+  +D+++    I     Y++MI G C+  ++  A H  Y +   G +P+
Sbjct: 301 FVKEGKFFEAEELYDEMLPRGIIPSTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPD 360

Query: 456 IVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
           I+ +N +I G C+     +  ++L EM + GL  + +T+  L  +HG
Sbjct: 361 IITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTL--IHG 405


>gi|147862640|emb|CAN81487.1| hypothetical protein VITISV_033285 [Vitis vinifera]
          Length = 1024

 Score =  217 bits (553), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 140/500 (28%), Positives = 252/500 (50%), Gaps = 13/500 (2%)

Query: 7    LSRVG---EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            LS+ G   EA     +++ RG  P+ V++   I GY +TG+M  A K FDEM   G++PN
Sbjct: 518  LSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPN 577

Query: 64   SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +  Y+VL+ G  +  ++  A + +F+    +    D+   +A     +  L + G V E 
Sbjct: 578  NPLYTVLINGHFKAGNLMEA-LSIFRRLHALGVLPDVQTCSA----FIHGLLKNGRVQEA 632

Query: 124  FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             ++  ++ +   V + F    +I   C+ G    A  +   M  +G+ P++  YN++V G
Sbjct: 633  LKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDG 692

Query: 184  LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            LCK G   RA +L +   + G  P   TY  +++G C   ++ +A  +   M SK     
Sbjct: 693  LCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPH 752

Query: 244  TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
            + + N  +   C   +  + +N+   MLQ +     ++ NT+I+G+CK  +I+EA ++  
Sbjct: 753  SFVYNALVHGCCKEGDMEKAMNLFREMLQ-KGFATTLSFNTLIDGYCKSCKIQEASQLFQ 811

Query: 304  DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            +M+A K   PD VT+TT+I      G+++EA NLL++ M +R      VTY +++ G  +
Sbjct: 812  EMIA-KQIMPDHVTYTTVIDWHCKAGKMEEA-NLLFKEMQERNLIVDTVTYTSLMYGYNK 869

Query: 364  LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
            L +  E   +F  M+  GV  D  TY +VI   C+ + L EA +  D++V    +    +
Sbjct: 870  LGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTI 929

Query: 424  YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
            +  +I  LC+   + EA   L E+ + G+ P++   N ++    +     EA ++   ++
Sbjct: 930  HDLLITALCKREDLTEASKLLDEMGELGLKPSLAACNTLVRSFHEAGKMDEATRVFEGVK 989

Query: 484  KNGLNPDAVTWRILDKLHGN 503
              GL PD  T  ++D ++GN
Sbjct: 990  SLGLVPDTTT--LIDLVNGN 1007



 Score =  212 bits (539), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 136/504 (26%), Positives = 238/504 (47%), Gaps = 40/504 (7%)

Query: 28  NVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLM 87
           +V +YT L+   C+TG++  A +V  EM   G+ PN   YS+++ G+ +  D++ A  L 
Sbjct: 227 DVYTYTYLVGALCKTGDLRGAKRVLIEMDEKGLNPNEFIYSLVIEGMCQVGDIDEAVEL- 285

Query: 88  FKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMID 147
               +R   E+ L  N   +  +   LCR   +NE     E+M +     +  AC  +ID
Sbjct: 286 ----KRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALID 341

Query: 148 SLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLP 207
              R G      R+  VM   G+  +L++YN ++HGLCK G   +A ++L+  +  G  P
Sbjct: 342 GFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMVTLGCKP 401

Query: 208 SEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVL 267
           +  T+ +L+EG C E ++ +A ++L  M  +  V         +  LC  K+ +    +L
Sbjct: 402 NSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLL 461

Query: 268 VFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM---------------------- 305
             M  +  +P+V+  + +I  +   GRIEEA ++L+ M                      
Sbjct: 462 EKMTFSGLKPNVVVYSILIMAYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKA 521

Query: 306 ------------VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVT 353
                       + G+   PDAVTF   I G    G++ EA    +  M   G  P    
Sbjct: 522 GKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAK-YFDEMLDHGLMPNNPL 580

Query: 354 YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413
           Y  ++ G F+   + EA  +F  +  +GV+ D  T +  I GL ++ ++ EA + + ++ 
Sbjct: 581 YTVLINGHFKAGNLMEALSIFRRLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELK 640

Query: 414 WPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKR 473
               + D + Y+++I G C+ G++ +A     E+   G+ PNI  YN ++DG CK    +
Sbjct: 641 EKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQ 700

Query: 474 EAYQILREMRKNGLNPDAVTWRIL 497
            A ++   M + GL PD+VT+  +
Sbjct: 701 RARKLFDGMPEKGLEPDSVTYSTM 724



 Score =  203 bits (517), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 136/537 (25%), Positives = 251/537 (46%), Gaps = 41/537 (7%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   ++ +A ++   M + G  PN  ++  LI GYCR   M  A ++ DEM    ++P+
Sbjct: 378 LCKFGKMEKAAEILKGMVTLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPS 437

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           +++Y  ++ G+   +D+  AN    KL E+M     L  N   ++ L+ +   EG + E 
Sbjct: 438 AVSYGAMINGLCHCKDLSLAN----KLLEKMTFS-GLKPNVVVYSILIMAYASEGRIEEA 492

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            R+ + M       + F    +I  L ++G+   AS  +  ++ RGL P  V++ + + G
Sbjct: 493 RRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILG 552

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
             K G    A +  +E +  G +P+   Y VL+ G     +L +A  + + + +   +  
Sbjct: 553 YSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRRLHALGVLPD 612

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK--- 300
            + C+ ++  L       E L V   + +    PDV T +++I+GFCK G +E+A +   
Sbjct: 613 VQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHD 672

Query: 301 ------------VLNDMVAG-------------------KFCAPDAVTFTTIIFGLLNVG 329
                       + N +V G                   K   PD+VT++T+I G     
Sbjct: 673 EMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSE 732

Query: 330 RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTY 389
            + EA +L ++ MP +G  P    YNA++ G  +   +E+A  +F  ML  G  A + ++
Sbjct: 733 NVAEAFSLFHE-MPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGF-ATTLSF 790

Query: 390 AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449
             +IDG C+S ++ EA + + +++    + D+  Y  +I   C++GK+ EA     E+ +
Sbjct: 791 NTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQE 850

Query: 450 SGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
             +  + V Y  ++ G  KL    E + +  +M   G+ PD VT+ ++   H    N
Sbjct: 851 RNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDN 907



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 144/525 (27%), Positives = 241/525 (45%), Gaps = 48/525 (9%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ +C +  + EA +L   M  +G VPN  +YT +  G CR   M+ A   F+EM+  G+
Sbjct: 270 IEGMCQVGDIDEAVELKRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGL 329

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+    S L+ G +R  D++   VL  K    +     + +N   +  L+  LC+ G +
Sbjct: 330 KPDYNACSALIDGFMREGDIDE--VLRIK---DVMVSCGIPINLITYNVLIHGLCKFGKM 384

Query: 121 NEVFRIAEDMPQ-GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
            +   I + M   G   N    C  +I+  CR      A  ++  M KR L PS VSY +
Sbjct: 385 EKAAEILKGMVTLGCKPNSRTFC-LLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGA 443

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           +++GLC       A +LLE+    G  P+   Y +L+     E  +E+AR++L  M S  
Sbjct: 444 MINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAYASEGRIEEARRLLDGM-SCS 502

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQ---CQPDVITLNTVINGFCKMGRIE 296
            V     C  Y   +  +    ++     ++L+ Q    +PD +T    I G+ K G++ 
Sbjct: 503 GVAPDIFC--YNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMT 560

Query: 297 EALKVLNDM---------------VAGKFCA-------------------PDAVTFTTII 322
           EA K  ++M               + G F A                   PD  T +  I
Sbjct: 561 EAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRRLHALGVLPDVQTCSAFI 620

Query: 323 FGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGV 382
            GLL  GR+QEAL + +  + ++G  P + TY++++ G  +   VE+A E+ + M   G+
Sbjct: 621 HGLLKNGRVQEALKV-FSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGI 679

Query: 383 VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVH 442
             +   Y  ++DGLC+S  +  A++ +D +       D+  Y+ MI G C+S  + EA  
Sbjct: 680 APNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFS 739

Query: 443 FLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
             +E+   GV P+   YN ++ G CK     +A  + REM + G 
Sbjct: 740 LFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGF 784



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 109/405 (26%), Positives = 195/405 (48%), Gaps = 8/405 (1%)

Query: 9    RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
            RV EA K+F ++K +G VP+V +Y++LI G+C+ GE++ A+++ DEM   G+ PN   Y+
Sbjct: 628  RVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYN 687

Query: 69   VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
             LV G+ ++ D++RA     KL++ M E+  L  ++  ++ ++D  C+   V E F +  
Sbjct: 688  ALVDGLCKSGDIQRAR----KLFDGMPEK-GLEPDSVTYSTMIDGYCKSENVAEAFSLFH 742

Query: 129  DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
            +MP        F    ++   C+ G    A  +   M ++G   +L S+N+++ G CK  
Sbjct: 743  EMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTL-SFNTLIDGYCKSC 801

Query: 189  GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
                A QL +E I    +P   TY  +++  C    +E+A  + + M  +  +  T    
Sbjct: 802  KIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYT 861

Query: 249  IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 308
              +     +   +E+  +   M+    +PD +T   VI   CK   + EA K L D V G
Sbjct: 862  SLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFK-LRDEVVG 920

Query: 309  KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE 368
            K           +I  L     + EA  LL + M + G  P +   N ++R      +++
Sbjct: 921  KGMLTKGTIHDLLITALCKREDLTEASKLLDE-MGELGLKPSLAACNTLVRSFHEAGKMD 979

Query: 369  EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413
            EA  VF  +  +G+V D+TT   +++G       ++A+     +V
Sbjct: 980  EATRVFEGVKSLGLVPDTTTLIDLVNGNLNDTDSEDARNLIKQLV 1024



 Score =  158 bits (399), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 104/398 (26%), Positives = 191/398 (47%), Gaps = 2/398 (0%)

Query: 109 NLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKR 168
           +L+  L + G +   +++   M   K   + +   +++ +LC++G   GA RV+  M ++
Sbjct: 198 SLLKDLLKCGMMELFWKVYNGMLDAKMGFDVYTYTYLVGALCKTGDLRGAKRVLIEMDEK 257

Query: 169 GLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKA 228
           GL P+   Y+ ++ G+C+ G    A +L     + G +P+ +TY ++  GLC    + +A
Sbjct: 258 GLNPNEFIYSLVIEGMCQVGDIDEAVELKRSMGEKGLVPNTYTYTIITAGLCRAKRMNEA 317

Query: 229 RKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVING 288
           +   + M           C+  +       +  E+L +   M+      ++IT N +I+G
Sbjct: 318 KLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHG 377

Query: 289 FCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYS 348
            CK G++E+A ++L  MV    C P++ TF  +I G      +  AL LL + M +R   
Sbjct: 378 LCKFGKMEKAAEILKGMVTLG-CKPNSRTFCLLIEGYCREHNMGRALELLDE-MEKRNLV 435

Query: 349 PGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRF 408
           P  V+Y A++ GL   + +  A ++   M   G+  +   Y+I+I       +++EA+R 
Sbjct: 436 PSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAYASEGRIEEARRL 495

Query: 409 WDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACK 468
            D +       D + Y A+I  L ++GK+ EA  +L E+   G+ P+ V +   I G  K
Sbjct: 496 LDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSK 555

Query: 469 LSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
                EA +   EM  +GL P+   + +L   H   GN
Sbjct: 556 TGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGN 593



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 174/342 (50%), Gaps = 7/342 (2%)

Query: 1    MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
            +D LC    +  A KLF  M  +G  P+ V+Y+T+I GYC++  +  A+ +F EM   GV
Sbjct: 690  VDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGV 749

Query: 61   LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             P+S  Y+ LV G  +  D+E+A  L  ++ ++            +F  L+D  C+   +
Sbjct: 750  QPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKG------FATTLSFNTLIDGYCKSCKI 803

Query: 121  NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
             E  ++ ++M   + + +      +ID  C++G+   A+ +   M++R L    V+Y S+
Sbjct: 804  QEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSL 863

Query: 181  VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
            ++G  K G     + L E+ +  G  P E TY +++   C E +L +A K+   ++ K  
Sbjct: 864  MYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGM 923

Query: 241  VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
            + +  I ++ + ALC  ++ TE   +L  M +   +P +   NT++  F + G+++EA +
Sbjct: 924  LTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACNTLVRSFHEAGKMDEATR 983

Query: 301  VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVM 342
            V  + V      PD  T   ++ G LN    ++A NL+ Q++
Sbjct: 984  VF-EGVKSLGLVPDTTTLIDLVNGNLNDTDSEDARNLIKQLV 1024



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 95/364 (26%), Positives = 162/364 (44%), Gaps = 43/364 (11%)

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGI--- 201
           +IDS  R G    A+ V +V +   +  SL+  NS++  L K  G M  +  +  G+   
Sbjct: 164 LIDSYKRMGMLDEAANVFFVAKNDSILISLIRCNSLLKDLLK-CGMMELFWKVYNGMLDA 222

Query: 202 QFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPT 261
           + G+    +TY  LV  LC   DL  A++VL  M  K                    NP 
Sbjct: 223 KMGF--DVYTYTYLVGALCKTGDLRGAKRVLIEMDEKG------------------LNPN 262

Query: 262 ELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTI 321
           E +  LV                 I G C++G I+EA+++   M   K   P+  T+T I
Sbjct: 263 EFIYSLV-----------------IEGMCQVGDIDEAVELKRSM-GEKGLVPNTYTYTII 304

Query: 322 IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG 381
             GL    R+ EA  L ++ M + G  P     +A++ G  R   ++E   + + M+  G
Sbjct: 305 TAGLCRAKRMNEA-KLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCG 363

Query: 382 VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAV 441
           +  +  TY ++I GLC+  ++++A      +V      ++  +  +I+G CR   +  A+
Sbjct: 364 IPINLITYNVLIHGLCKFGKMEKAAEILKGMVTLGCKPNSRTFCLLIEGYCREHNMGRAL 423

Query: 442 HFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLH 501
             L E+    + P+ V Y  +I+G C       A ++L +M  +GL P+ V + IL   +
Sbjct: 424 ELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAY 483

Query: 502 GNRG 505
            + G
Sbjct: 484 ASEG 487


>gi|356560499|ref|XP_003548529.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic-like [Glycine max]
          Length = 836

 Score =  217 bits (552), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 147/508 (28%), Positives = 245/508 (48%), Gaps = 10/508 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C   RVG+A  LF  M+  G  PNVV+Y  +I G  ++G  + A +  D M    V
Sbjct: 262 INAFCKGGRVGDAVDLFCKMEGLGVFPNVVTYNNVIDGLFKSGRFEEALRFKDRMVRSKV 321

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TY VL+ G+++    E AN ++ +++         + N   F  L+D  CR+G +
Sbjct: 322 NPSVVTYGVLISGLMKLEMFEEANEVLVEMYSM-----GFAPNEVVFNALIDGYCRKGDM 376

Query: 121 NEVFRIAEDMPQGKSVNEEFAC-GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
            E  R+ ++M   K +   F     ++   CRS +   A +V+  +   GL+ ++   + 
Sbjct: 377 GEALRVRDEMAM-KGMKPNFVTFNTLLQGFCRSNQMEQAEQVLVYILSSGLSVNMDVCSY 435

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCG-ESDLEKARKVLQFMLSK 238
           ++H L +  G + A +++ + +      S+     LV GLC  E   E      +    K
Sbjct: 436 VIHRLMERSGFVSALKIVTKLLSGNIRVSDSLLTPLVVGLCKCEGHSEAIELWFKLAAVK 495

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
                T   N  L  LC   N  E+  VL  ML+     D I+ NT+I G CK G+IEEA
Sbjct: 496 GLAANTVTSNALLHGLCERGNMEEVFEVLKQMLEKGLLLDRISYNTLIFGCCKWGKIEEA 555

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
            K+  +MV  +F  PD  T+  ++ GL ++G+I +   LL++   + G+ P + TY  +L
Sbjct: 556 FKLKEEMVQQEF-QPDTYTYNFLMKGLADMGKIDDVHRLLHEA-KEYGFVPNVYTYALLL 613

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
            G  +  R+E+A + F  +    V   S  Y I+I   C    + EA +  D +     +
Sbjct: 614 EGYCKADRIEDAVKFFKNLDYEKVELSSVVYNILIAAYCRIGNVTEAFKLRDAMKSRGIL 673

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI 478
                Y+++I G+C  G++ EA     E+ + G+ PN+ CY  +I G CKL        I
Sbjct: 674 PTCATYSSLIHGMCCIGRVDEAKEIFEEMRNEGLLPNVFCYTALIGGHCKLGQMDIVGSI 733

Query: 479 LREMRKNGLNPDAVTWRILDKLHGNRGN 506
           L EM  NG+ P+ +T+ I+   +   GN
Sbjct: 734 LLEMSSNGIRPNKITYTIMIDGYCKLGN 761



 Score =  209 bits (532), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 150/565 (26%), Positives = 260/565 (46%), Gaps = 72/565 (12%)

Query: 4   LCGLSRVGEAHKLF--FDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVL 61
           L  L +  E HK +  FD+  +G  P+V ++TT I+ +C+ G +  A  +F +M   GV 
Sbjct: 228 LSSLVKANELHKSYEVFDLACQGVAPDVFTFTTAINAFCKGGRVGDAVDLFCKMEGLGVF 287

Query: 62  PNSLTYSVLVRGVLRTRDVERA------------------------NVLMFKLWERMKE- 96
           PN +TY+ ++ G+ ++   E A                         ++  +++E   E 
Sbjct: 288 PNVVTYNNVIDGLFKSGRFEEALRFKDRMVRSKVNPSVVTYGVLISGLMKLEMFEEANEV 347

Query: 97  -----EEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFAC-GHMIDSLC 150
                    + N   F  L+D  CR+G + E  R+ ++M   K +   F     ++   C
Sbjct: 348 LVEMYSMGFAPNEVVFNALIDGYCRKGDMGEALRVRDEMAM-KGMKPNFVTFNTLLQGFC 406

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
           RS +   A +V+  +   GL+ ++   + ++H L +  G + A +++ + +      S+ 
Sbjct: 407 RSNQMEQAEQVLVYILSSGLSVNMDVCSYVIHRLMERSGFVSALKIVTKLLSGNIRVSDS 466

Query: 211 TYKVLVEGLCG-ESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVF 269
               LV GLC  E   E      +    K     T   N  L  LC   N  E+  VL  
Sbjct: 467 LLTPLVVGLCKCEGHSEAIELWFKLAAVKGLAANTVTSNALLHGLCERGNMEEVFEVLKQ 526

Query: 270 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG 329
           ML+     D I+ NT+I G CK G+IEEA K+  +MV  +F  PD  T+  ++ GL ++G
Sbjct: 527 MLEKGLLLDRISYNTLIFGCCKWGKIEEAFKLKEEMVQQEF-QPDTYTYNFLMKGLADMG 585

Query: 330 RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVF--------------- 374
           +I +   LL++   + G+ P + TY  +L G  +  R+E+A + F               
Sbjct: 586 KIDDVHRLLHEA-KEYGFVPNVYTYALLLEGYCKADRIEDAVKFFKNLDYEKVELSSVVY 644

Query: 375 --------------------NCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVW 414
                               + M   G++    TY+ +I G+C   ++DEAK  ++++  
Sbjct: 645 NILIAAYCRIGNVTEAFKLRDAMKSRGILPTCATYSSLIHGMCCIGRVDEAKEIFEEMRN 704

Query: 415 PSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKRE 474
              + + + Y A+I G C+ G++      L E+  +G+ PN + Y ++IDG CKL   +E
Sbjct: 705 EGLLPNVFCYTALIGGHCKLGQMDIVGSILLEMSSNGIRPNKITYTIMIDGYCKLGNMKE 764

Query: 475 AYQILREMRKNGLNPDAVTWRILDK 499
           A ++L EM +NG+ PD VT+  L K
Sbjct: 765 ARELLNEMIRNGIAPDTVTYNALQK 789



 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 139/505 (27%), Positives = 245/505 (48%), Gaps = 19/505 (3%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           L  L    EA+++  +M S G  PN V +  LI GYCR G+M  A +V DEM   G+ PN
Sbjct: 335 LMKLEMFEEANEVLVEMYSMGFAPNEVVFNALIDGYCRKGDMGEALRVRDEMAMKGMKPN 394

Query: 64  SLTYSVLVRGVLRTRDVERA-NVLMFKLWERMKEEEDLSVNNAAFANLVDSLC-REGYVN 121
            +T++ L++G  R+  +E+A  VL++ L         LSVN    + ++  L  R G+V+
Sbjct: 395 FVTFNTLLQGFCRSNQMEQAEQVLVYIL------SSGLSVNMDVCSYVIHRLMERSGFVS 448

Query: 122 EVFRIAEDMPQGKSVNEEFACGHMIDSLCR-SGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
              +I   +  G     +     ++  LC+  G +        +   +GL  + V+ N++
Sbjct: 449 -ALKIVTKLLSGNIRVSDSLLTPLVVGLCKCEGHSEAIELWFKLAAVKGLAANTVTSNAL 507

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +HGLC+ G     +++L++ ++ G L    +Y  L+ G C    +E+A K+ + M+ ++ 
Sbjct: 508 LHGLCERGNMEEVFEVLKQMLEKGLLLDRISYNTLIFGCCKWGKIEEAFKLKEEMVQQEF 567

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
              T   N  ++ L  +    ++  +L    +    P+V T   ++ G+CK  RIE+A+K
Sbjct: 568 QPDTYTYNFLMKGLADMGKIDDVHRLLHEAKEYGFVPNVYTYALLLEGYCKADRIEDAVK 627

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
              ++   K     +V +  +I     +G + EA  L    M  RG  P   TY++++ G
Sbjct: 628 FFKNLDYEK-VELSSVVYNILIAAYCRIGNVTEAFKL-RDAMKSRGILPTCATYSSLIHG 685

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           +  + RV+EAKE+F  M   G++ +   Y  +I G C+  Q+D       ++       +
Sbjct: 686 MCCIGRVDEAKEIFEEMRNEGLLPNVFCYTALIGGHCKLGQMDIVGSILLEMSSNGIRPN 745

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              Y  MI G C+ G + EA   L E++ +G+ P+ V YN +  G CK   +RE    L+
Sbjct: 746 KITYTIMIDGYCKLGNMKEARELLNEMIRNGIAPDTVTYNALQKGYCK---ERELTVTLQ 802

Query: 481 EMRKNGLN---PDAVTWRIL-DKLH 501
              K+ +     + +T+  L  KLH
Sbjct: 803 SDHKSNIGLPLEEEITYNTLIHKLH 827



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 106/433 (24%), Positives = 202/433 (46%), Gaps = 33/433 (7%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVA------------ 48
           +D  C    +GEA ++  +M  +G  PN V++ TL+ G+CR+ +M+ A            
Sbjct: 367 IDGYCRKGDMGEALRVRDEMAMKGMKPNFVTFNTLLQGFCRSNQMEQAEQVLVYILSSGL 426

Query: 49  --------YKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLM-----------FK 89
                   Y +   M   G +      + L+ G +R  D     +++            +
Sbjct: 427 SVNMDVCSYVIHRLMERSGFVSALKIVTKLLSGNIRVSDSLLTPLVVGLCKCEGHSEAIE 486

Query: 90  LWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSL 149
           LW ++   + L+ N      L+  LC  G + EVF + + M +   + +  +   +I   
Sbjct: 487 LWFKLAAVKGLAANTVTSNALLHGLCERGNMEEVFEVLKQMLEKGLLLDRISYNTLIFGC 546

Query: 150 CRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSE 209
           C+ G+   A ++   M ++   P   +YN ++ GL   G     ++LL E  ++G++P+ 
Sbjct: 547 CKWGKIEEAFKLKEEMVQQEFQPDTYTYNFLMKGLADMGKIDDVHRLLHEAKEYGFVPNV 606

Query: 210 HTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVF 269
           +TY +L+EG C    +E A K  + +  +K    + + NI + A C I N TE   +   
Sbjct: 607 YTYALLLEGYCKADRIEDAVKFFKNLDYEKVELSSVVYNILIAAYCRIGNVTEAFKLRDA 666

Query: 270 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG 329
           M      P   T +++I+G C +GR++EA ++  +M   +   P+   +T +I G   +G
Sbjct: 667 MKSRGILPTCATYSSLIHGMCCIGRVDEAKEIFEEM-RNEGLLPNVFCYTALIGGHCKLG 725

Query: 330 RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTY 389
           ++    ++L + M   G  P  +TY  ++ G  +L  ++EA+E+ N M+  G+  D+ TY
Sbjct: 726 QMDIVGSILLE-MSSNGIRPNKITYTIMIDGYCKLGNMKEARELLNEMIRNGIAPDTVTY 784

Query: 390 AIVIDGLCESNQL 402
             +  G C+  +L
Sbjct: 785 NALQKGYCKEREL 797



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 116/472 (24%), Positives = 212/472 (44%), Gaps = 20/472 (4%)

Query: 48  AYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAA- 106
           A+ +F      GV P   T ++L+  +++  ++ ++            E  DL+    A 
Sbjct: 205 AFDIFVMFSKRGVFPCLKTCNLLLSSLVKANELHKS-----------YEVFDLACQGVAP 253

Query: 107 ----FANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVV 162
               F   +++ C+ G V +   +   M             ++ID L +SGR   A R  
Sbjct: 254 DVFTFTTAINAFCKGGRVGDAVDLFCKMEGLGVFPNVVTYNNVIDGLFKSGRFEEALRFK 313

Query: 163 YVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGE 222
             M +  + PS+V+Y  ++ GL K      A ++L E    G+ P+E  +  L++G C +
Sbjct: 314 DRMVRSKVNPSVVTYGVLISGLMKLEMFEEANEVLVEMYSMGFAPNEVVFNALIDGYCRK 373

Query: 223 SDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITL 282
            D+ +A +V   M  K         N  L+  C      +   VLV++L +    ++   
Sbjct: 374 GDMGEALRVRDEMAMKGMKPNFVTFNTLLQGFCRSNQMEQAEQVLVYILSSGLSVNMDVC 433

Query: 283 NTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVM 342
           + VI+   +      ALK++  +++G     D++  T ++ GL       EA+ L +++ 
Sbjct: 434 SYVIHRLMERSGFVSALKIVTKLLSGNIRVSDSL-LTPLVVGLCKCEGHSEAIELWFKLA 492

Query: 343 PQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQL 402
             +G +   VT NA+L GL     +EE  EV   ML  G++ D  +Y  +I G C+  ++
Sbjct: 493 AVKGLAANTVTSNALLHGLCERGNMEEVFEVLKQMLEKGLLLDRISYNTLIFGCCKWGKI 552

Query: 403 DEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVV 462
           +EA +  +++V      D Y Y  ++KGL   GKI +    L+E  + G  PN+  Y ++
Sbjct: 553 EEAFKLKEEMVQQEFQPDTYTYNFLMKGLADMGKIDDVHRLLHEAKEYGFVPNVYTYALL 612

Query: 463 IDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLH---GNRGNDFGLR 511
           ++G CK     +A +  + +    +   +V + IL   +   GN    F LR
Sbjct: 613 LEGYCKADRIEDAVKFFKNLDYEKVELSSVVYNILIAAYCRIGNVTEAFKLR 664



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 115/486 (23%), Positives = 197/486 (40%), Gaps = 58/486 (11%)

Query: 56  RHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLC 115
           RHC       +Y +L+R +L    V RA  L+ +L +                    S  
Sbjct: 110 RHCNFRFTVRSYCLLLRSLLADSFVPRARFLLARLID-------------GHVPTWSSKT 156

Query: 116 REGYVNEVFRIAEDMPQGKSVNEEFACGHM---IDSLCRSGRNHG---ASRVVYVMRKRG 169
              + + +  IA  M +    ++E   G +   +  LC   +  G   A  +  +  KRG
Sbjct: 157 TTSFHDRLREIASSMLELNQGSDEQRLGELDLLLHILCSQFKCLGSRCAFDIFVMFSKRG 216

Query: 170 LTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKAR 229
           + P L + N ++  L K     ++Y++ +   Q G  P   T+   +   C    +  A 
Sbjct: 217 VFPCLKTCNLLLSSLVKANELHKSYEVFDLACQ-GVAPDVFTFTTAINAFCKGGRVGDAV 275

Query: 230 KVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGF 289
            +   M            N  +  L       E L     M++++  P V+T   +I+G 
Sbjct: 276 DLFCKMEGLGVFPNVVTYNNVIDGLFKSGRFEEALRFKDRMVRSKVNPSVVTYGVLISGL 335

Query: 290 CKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSP 349
            K+   EEA +VL +M +  F AP+ V F  +I G    G + EAL +  + M  +G  P
Sbjct: 336 MKLEMFEEANEVLVEMYSMGF-APNEVVFNALIDGYCRKGDMGEALRVRDE-MAMKGMKP 393

Query: 350 GIVTYNAVLRGLFRLRRVEEAKEVFNCML--GIGVVADSTTYAI---------------- 391
             VT+N +L+G  R  ++E+A++V   +L  G+ V  D  +Y I                
Sbjct: 394 NFVTFNTLLQGFCRSNQMEQAEQVLVYILSSGLSVNMDVCSYVIHRLMERSGFVSALKIV 453

Query: 392 -----------------VIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYA-AMIKGLCR 433
                            ++ GLC+     EA   W  +     +  N V + A++ GLC 
Sbjct: 454 TKLLSGNIRVSDSLLTPLVVGLCKCEGHSEAIELWFKLAAVKGLAANTVTSNALLHGLCE 513

Query: 434 SGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVT 493
            G + E    L ++++ G+  + + YN +I G CK     EA+++  EM +    PD  T
Sbjct: 514 RGNMEEVFEVLKQMLEKGLLLDRISYNTLIFGCCKWGKIEEAFKLKEEMVQQEFQPDTYT 573

Query: 494 WRILDK 499
           +  L K
Sbjct: 574 YNFLMK 579



 Score = 39.7 bits (91), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 2/72 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C L  + EA +L  +M   G  P+ V+Y  L  GYC+  E+ V  +  D   + G+
Sbjct: 753 IDGYCKLGNMKEARELLNEMIRNGIAPDTVTYNALQKGYCKERELTVTLQS-DHKSNIGL 811

Query: 61  -LPNSLTYSVLV 71
            L   +TY+ L+
Sbjct: 812 PLEEEITYNTLI 823


>gi|449439615|ref|XP_004137581.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Cucumis sativus]
          Length = 857

 Score =  217 bits (552), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 136/507 (26%), Positives = 245/507 (48%), Gaps = 8/507 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M   C   R   A +L  +M  +G   N VSY  +I G+ +      AY +FDEM   G+
Sbjct: 153 MKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQGI 212

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ LT++ L+  + +  +V+ +  L  K+ +R      +  N   F   +  LCR+G +
Sbjct: 213 CPDILTFNKLIHVLCKKGNVQESEKLFSKVMKR-----GVCPNLFTFNIFIQGLCRKGAI 267

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E  R+ E +       +  +   +I   C+  +   A   ++ M   G+ P+  +YN+I
Sbjct: 268 DEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTI 327

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++G CK G    A ++L + +  G++P E TY  L+ GLC + D+ +A  V    + K  
Sbjct: 328 INGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGF 387

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                + N  ++ L       + L ++  M++  C PD+ T N V+NG CKMG + +A  
Sbjct: 388 KHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANG 447

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +LND +A K C PD  TF T+I G      + +A+ +L   M   G +P ++TYN +L G
Sbjct: 448 ILNDAIA-KGCIPDIFTFNTLIDGYCKQRNMDKAIEIL-DTMLSHGITPDVITYNTLLNG 505

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L + R+++   + F  ML  G   +  TY I+I+  C+  ++ EA   + ++       D
Sbjct: 506 LCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGLTPD 565

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYEL-VDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
                 +I GLC +G++ +A      +  +   + +   +N++I+  C+      A ++ 
Sbjct: 566 IVTLCTLICGLCSNGELDKAYELFVTIEKEYKFSYSTAIFNIMINAFCEKLNVSMAEKLF 625

Query: 480 REMRKNGLNPDAVTWRILDKLHGNRGN 506
            +M  +   PD  T+R++   +   GN
Sbjct: 626 HKMGGSDCAPDNYTYRVMIDSYCKTGN 652



 Score =  209 bits (532), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 134/490 (27%), Positives = 235/490 (47%), Gaps = 8/490 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC    V E+ KLF  +  RG  PN+ ++   I G CR G +D A ++ + +   G+ P+
Sbjct: 226 LCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPD 285

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            ++Y+ L+ G  +   +  A   + K+     E  + + N      +++  C+ G +   
Sbjct: 286 VISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNT-----IINGFCKAGMMQNA 340

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            +I  D      + +EF    +I+ LC  G  + A  V Y   ++G   S++ YN++V G
Sbjct: 341 DKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKG 400

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           L K G  ++A QL+++ ++ G  P   TY ++V GLC    L  A  +L   ++K  +  
Sbjct: 401 LSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPD 460

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               N  +   C  +N  + + +L  ML     PDVIT NT++NG CK  +++  +    
Sbjct: 461 IFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFK 520

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            M+  K C P+ +T+  +I       ++ EA+  L++ M  RG +P IVT   ++ GL  
Sbjct: 521 AMLE-KGCTPNIITYNILIESFCKDRKVSEAME-LFKEMKTRGLTPDIVTLCTLICGLCS 578

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTT-YAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
              +++A E+F  +      + ST  + I+I+  CE   +  A++ +  +       DNY
Sbjct: 579 NGELDKAYELFVTIEKEYKFSYSTAIFNIMINAFCEKLNVSMAEKLFHKMGGSDCAPDNY 638

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
            Y  MI   C++G I  A  FL E +  G+ P+      V++  C      EA  I+  M
Sbjct: 639 TYRVMIDSYCKTGNIDLAHTFLLENISKGLVPSFTTCGKVLNCLCVTHRLSEAVVIINLM 698

Query: 483 RKNGLNPDAV 492
            +NG+ P+ V
Sbjct: 699 VQNGIVPEEV 708



 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 121/469 (25%), Positives = 233/469 (49%), Gaps = 13/469 (2%)

Query: 32  YTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLW 91
           Y  ++  Y R G++  A  VF+ M      P+  +Y+ ++  ++      +A+    K++
Sbjct: 79  YIGIMRDYGRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAH----KVY 134

Query: 92  ERMKEEEDLSVNNAAFANLV--DSLCREGYVNEVFRIAEDMP-QGKSVNEEFACGHMIDS 148
            RMK   D+ +    + + +   S C  G      R+  +MP QG   N    C  +I  
Sbjct: 135 MRMK---DIGIYPDVYTHTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCA-VISG 190

Query: 149 LCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPS 208
             +      A  +   M K+G+ P ++++N ++H LCK G    + +L  + ++ G  P+
Sbjct: 191 FYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPN 250

Query: 209 EHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLV 268
             T+ + ++GLC +  +++A ++L+ ++S+         N  +   C      E    L 
Sbjct: 251 LFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLH 310

Query: 269 FMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNV 328
            M+ +  +P+  T NT+INGFCK G ++ A K+L D +   F  PD  T++++I GL N 
Sbjct: 311 KMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGF-IPDEFTYSSLINGLCND 369

Query: 329 GRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTT 388
           G +  A+ + Y+ M ++G+   I+ YN +++GL +   V +A ++   M+  G   D  T
Sbjct: 370 GDMNRAMAVFYEAM-EKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWT 428

Query: 389 YAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELV 448
           Y +V++GLC+   L +A    +D +    I D + +  +I G C+   + +A+  L  ++
Sbjct: 429 YNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTML 488

Query: 449 DSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
             G+TP+++ YN +++G CK           + M + G  P+ +T+ IL
Sbjct: 489 SHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNIL 537



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 100/417 (23%), Positives = 204/417 (48%), Gaps = 15/417 (3%)

Query: 88  FKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMID 147
            K++ ++K E+        +  +++ L   G    +  +  +M   K+V+ +   G  I 
Sbjct: 24  LKMFNQVKTEDGFKHTLETYKCMIEKLGLHGKFEAMEDVLAEMR--KNVDSKMLEGVYIG 81

Query: 148 SLCRSGRNHGASRVVYVMRKRGL---TPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
            +   GR       V V  +       PS+ SYN+I++ L ++G   +A+++       G
Sbjct: 82  IMRDYGRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIG 141

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK-DVDRTRICNI---YLRALCLIKNP 260
             P  +T+ + ++  C       A ++L  M  +  + +    C +   + +  C I   
Sbjct: 142 IYPDVYTHTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQI--- 198

Query: 261 TELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTT 320
            E  ++   ML+    PD++T N +I+  CK G ++E+ K+ + ++    C P+  TF  
Sbjct: 199 -EAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVC-PNLFTFNI 256

Query: 321 IIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI 380
            I GL   G I EA  LL  ++ + G +P +++YN ++ G  +  ++ EA+   + M+  
Sbjct: 257 FIQGLCRKGAIDEAARLLESIVSE-GLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNS 315

Query: 381 GVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEA 440
           GV  +  TY  +I+G C++  +  A +   D ++   I D + Y+++I GLC  G ++ A
Sbjct: 316 GVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRA 375

Query: 441 VHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           +   YE ++ G   +I+ YN ++ G  K  +  +A Q++++M ++G +PD  T+ ++
Sbjct: 376 MAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLV 432



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 106/238 (44%), Gaps = 6/238 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C    + +A ++   M S G  P+V++Y TL++G C+  ++D     F  M   G 
Sbjct: 468 IDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGC 527

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +TY++L+    + R V  A     +L++ MK    L+ +      L+  LC  G +
Sbjct: 528 TPNIITYNILIESFCKDRKVSEA----MELFKEMK-TRGLTPDIVTLCTLICGLCSNGEL 582

Query: 121 NEVFRIAEDMPQGKSVNEEFACGH-MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           ++ + +   + +    +   A  + MI++ C       A ++ + M      P   +Y  
Sbjct: 583 DKAYELFVTIEKEYKFSYSTAIFNIMINAFCEKLNVSMAEKLFHKMGGSDCAPDNYTYRV 642

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
           ++   CK G    A+  L E I  G +PS  T   ++  LC    L +A  ++  M+ 
Sbjct: 643 MIDSYCKTGNIDLAHTFLLENISKGLVPSFTTCGKVLNCLCVTHRLSEAVVIINLMVQ 700



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 95/185 (51%), Gaps = 10/185 (5%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C   +V EA +LF +MK+RG  P++V+  TLI G C  GE+D AY++F  +     
Sbjct: 538 IESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYELFVTIEK--- 594

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMF-KLWERMKEEEDLSVNNAAFANLVDSLCREGY 119
                +YS  +  ++     E+ NV M  KL+ +M    D + +N  +  ++DS C+ G 
Sbjct: 595 -EYKFSYSTAIFNIMINAFCEKLNVSMAEKLFHKMGGS-DCAPDNYTYRVMIDSYCKTGN 652

Query: 120 VNEVFR-IAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
           ++     + E++ +G  V     CG +++ LC + R   A  ++ +M + G+ P  V  N
Sbjct: 653 IDLAHTFLLENISKG-LVPSFTTCGKVLNCLCVTHRLSEAVVIINLMVQNGIVPEEV--N 709

Query: 179 SIVHG 183
           SI   
Sbjct: 710 SIFEA 714



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 70/157 (44%), Gaps = 8/157 (5%)

Query: 354 YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFW---- 409
           Y  ++R   R  +V+EA  VF  M          +Y  +++ L E     +A + +    
Sbjct: 79  YIGIMRDYGRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMK 138

Query: 410 DDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKL 469
           D  ++P    D Y +   +K  C +G+   A+  L  +   G   N V Y  VI G  K 
Sbjct: 139 DIGIYP----DVYTHTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKE 194

Query: 470 SMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           + + EAY +  EM K G+ PD +T+  L  +   +GN
Sbjct: 195 NCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKKGN 231


>gi|147833070|emb|CAN77584.1| hypothetical protein VITISV_034996 [Vitis vinifera]
          Length = 913

 Score =  217 bits (552), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 143/527 (27%), Positives = 256/527 (48%), Gaps = 40/527 (7%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C   +  +A +L   M  +G  P+V SY TLI+   + G M  A K+FDEM   GV P+ 
Sbjct: 135 CRKKQFDKAKELLNWMWGQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDV 194

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
             Y++L+ G  +  D+  A+    ++WER+ +   +  N  ++  +++ LC+ G  +E F
Sbjct: 195 ACYNILIDGFFKKGDILNAS----EIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESF 250

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
            I   M + +   + +    +I  LC SG   GA+RV   M + G++P +V YN++++G 
Sbjct: 251 EIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGY 310

Query: 185 CKHG---GCMRAYQLLE------------------------EGIQFGYLPSEH------- 210
            + G    C+  ++++E                        E I    L  E        
Sbjct: 311 LRAGRIEECLELWKVMEKEGCRTVVSYNILIRGLFENAKVDEAISIWELLPEKDCCADSM 370

Query: 211 TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM 270
           TY VLV GLC    L KA  +L+   + +    T   +  +  LC      E+  VL  M
Sbjct: 371 TYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQM 430

Query: 271 LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR 330
            +  C+P+    N VINGF +  ++E+AL+   +MV+ K C P  VT+ T+I GL    R
Sbjct: 431 TKHGCKPNPYVCNAVINGFVRASKLEDALRFFGNMVS-KGCFPTVVTYNTLINGLSKAER 489

Query: 331 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYA 390
             EA  L+ +++ Q+G+ P ++TY+ ++ GL + ++++ A  ++   L  G   D   + 
Sbjct: 490 FSEAYALVKEML-QKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHN 548

Query: 391 IVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 450
           I+I GLC S ++++A + + ++   + + +   +  +++G  +      A      ++  
Sbjct: 549 IIIHGLCSSGKVEDALQLYSEMKQRNCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQY 608

Query: 451 GVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           G+ P+I+ YN+ + G C      +A   L +    G+ P A+TW IL
Sbjct: 609 GLQPDIISYNITLKGLCSCHRISDAVGFLNDAVDRGVLPTAITWNIL 655



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 118/476 (24%), Positives = 228/476 (47%), Gaps = 46/476 (9%)

Query: 24  GHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERA 83
           G  P + SY +L++    + + D A   F      G+ PN  TY++L++   R +  ++A
Sbjct: 84  GCQPGIRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKA 143

Query: 84  NVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACG 143
             L+  +W      +  S +  ++  L++SL + GY+++  ++ ++MP+ + V  + AC 
Sbjct: 144 KELLNWMW-----GQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPE-RGVTPDVACY 197

Query: 144 H-MIDSLCRSGRNHGASRVV-YVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGI 201
           + +ID   + G    AS +   +++   + P++ SYN +++GLCK G    ++++     
Sbjct: 198 NILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMK 257

Query: 202 QFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPT 261
           +       +TY  L+ GLCG  +L+ A +V +                            
Sbjct: 258 KNERGQDLYTYSTLIHGLCGSGNLDGATRVYK---------------------------- 289

Query: 262 ELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTI 321
                   M +    PDV+  NT++NG+ + GRIEE L++    V  K      V++  +
Sbjct: 290 -------EMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWK--VMEKEGCRTVVSYNIL 340

Query: 322 IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG 381
           I GL    ++ EA++ +++++P++      +TY  ++ GL +   + +A  +        
Sbjct: 341 IRGLFENAKVDEAIS-IWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGR 399

Query: 382 VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAV 441
              D+  Y+ +I+GLC   +LDE     D +       + YV  A+I G  R+ K+ +A+
Sbjct: 400 GDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPYVCNAVINGFVRASKLEDAL 459

Query: 442 HFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            F   +V  G  P +V YN +I+G  K     EAY +++EM + G  P+ +T+ +L
Sbjct: 460 RFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLQKGWKPNMITYSLL 515



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 115/424 (27%), Positives = 201/424 (47%), Gaps = 31/424 (7%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   +  E+ +++  MK      ++ +Y+TLIHG C +G +D A +V+ EM   GV
Sbjct: 237 INGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGV 296

Query: 61  LPNSLTYSVLVRGVLRT------------------RDVERANVLMFKLWERMKEEEDLSV 102
            P+ + Y+ ++ G LR                   R V   N+L+  L+E  K +E +S+
Sbjct: 297 SPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRTVVSYNILIRGLFENAKVDEAISI 356

Query: 103 -----------NNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCR 151
                      ++  +  LV  LC+ GY+N+   I E+   G+   + FA   MI+ LCR
Sbjct: 357 WELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGLCR 416

Query: 152 SGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHT 211
            GR    + V+  M K G  P+    N++++G  +      A +     +  G  P+  T
Sbjct: 417 EGRLDEVAGVLDQMTKHGCKPNPYVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVT 476

Query: 212 YKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFML 271
           Y  L+ GL       +A  +++ ML K         ++ +  LC  K     LN+    L
Sbjct: 477 YNTLINGLSKAERFSEAYALVKEMLQKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQAL 536

Query: 272 QTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRI 331
           +   +PDV   N +I+G C  G++E+AL++ ++M   + C P+ VT  T++ G   V   
Sbjct: 537 EKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEM-KQRNCVPNLVTHNTLMEGFYKVRDF 595

Query: 332 QEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAI 391
           + A  +   ++ Q G  P I++YN  L+GL    R+ +A    N  +  GV+  + T+ I
Sbjct: 596 ERASKIWDHIL-QYGLQPDIISYNITLKGLCSCHRISDAVGFLNDAVDRGVLPTAITWNI 654

Query: 392 VIDG 395
           ++ G
Sbjct: 655 LVQG 658



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 107/221 (48%), Gaps = 8/221 (3%)

Query: 285 VINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALN--LLYQVM 342
           V + + K    ++AL +   M     C P   ++ +++  L+   +  EA +  L ++ M
Sbjct: 59  VAHAYAKNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFETM 118

Query: 343 PQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQL 402
              G SP + TYN +++   R ++ ++AKE+ N M G G   D  +Y  +I+ L ++  +
Sbjct: 119 ---GLSPNLQTYNILIKISCRKKQFDKAKELLNWMWGQGFSPDVFSYGTLINSLAKNGYM 175

Query: 403 DEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD-SGVTPNIVCYNV 461
            +A + +D++       D   Y  +I G  + G I  A      L+    V PNI  YNV
Sbjct: 176 SDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNV 235

Query: 462 VIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
           +I+G CK     E+++I   M+KN    D  T+  L  +HG
Sbjct: 236 MINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTL--IHG 274


>gi|291622148|emb|CBJ23784.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score =  217 bits (552), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 135/494 (27%), Positives = 245/494 (49%), Gaps = 42/494 (8%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C  S++  A  +   M   G+ PN+V+ ++L++GYC +  +  A  + D+M   G  PN
Sbjct: 126 FCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPN 185

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           ++T++ L+ G+        A  L+ ++  +   + DL      +  +V+ LC+ G  +  
Sbjct: 186 TVTFNTLIHGLFLHNKASEAVALIDRMVAK-GCQPDL----VTYGVVVNGLCKRGDTDLA 240

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           F +   M QGK          +ID LC++     A  +   M  +G+ P++V+Y+S++  
Sbjct: 241 FILLNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLISC 300

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LC +G    A +LL + I+    P   T+  L++    E  L +A K+   M+ K+ +D 
Sbjct: 301 LCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMV-KRSID- 358

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                                            P ++T +++INGFC   R++EA ++  
Sbjct: 359 ---------------------------------PSIVTYSSLINGFCMHDRLDEAKQMFE 385

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            MV+ K C PD V+++T+I G     R+ E + L ++ M QRG     VTY  +++GLF+
Sbjct: 386 FMVS-KHCFPDVVSYSTLIKGFCKAKRVDEGMEL-FREMSQRGLVGNTVTYTTLIQGLFQ 443

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
               + A+E+F  M+  GV  +  TY  ++DGLC++ +L++A   ++ +         Y 
Sbjct: 444 AGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYT 503

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y  MI+G+C++GK+ +       L   GV P++V YN +I G C+   K EA  + +EM+
Sbjct: 504 YNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMK 563

Query: 484 KNGLNPDAVTWRIL 497
           ++G  P++  +  L
Sbjct: 564 EDGTLPNSGCYNTL 577



 Score =  206 bits (523), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 134/501 (26%), Positives = 237/501 (47%), Gaps = 43/501 (8%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C   R+ EA  L   M   G+ PN V++ TLIHG     +   A  + D M   G  P+ 
Sbjct: 162 CHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAKGCQPDL 221

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           +TY V+V G+ +  D + A +L+ K+     E+  L      +  ++D LC+  ++++  
Sbjct: 222 VTYGVVVNGLCKRGDTDLAFILLNKM-----EQGKLEPGVLIYTTIIDGLCKNKHMDDAL 276

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
            + ++M              +I  LC  GR   ASR++  M +R + P + ++++++   
Sbjct: 277 NLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAF 336

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
            K G  + A +L +E ++    PS  TY  L+ G C    L++A+++ +FM+SK      
Sbjct: 337 VKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSK------ 390

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
                                         C PDV++ +T+I GFCK  R++E +++  +
Sbjct: 391 -----------------------------HCFPDVVSYSTLIKGFCKAKRVDEGMELFRE 421

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
           M + +    + VT+TT+I GL   G    A   +++ M   G  P I+TYN +L GL + 
Sbjct: 422 M-SQRGLVGNTVTYTTLIQGLFQAGDCDMAQE-IFKEMVSDGVPPNIMTYNTLLDGLCKN 479

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY 424
            ++E+A  VF  +    +     TY I+I+G+C++ ++++    + ++       D   Y
Sbjct: 480 GKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAY 539

Query: 425 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484
             MI G CR G   EA     E+ + G  PN  CYN +I    +   +  + ++++EMR 
Sbjct: 540 NTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRS 599

Query: 485 NGLNPDAVTWRIL-DKLHGNR 504
            G   DA T  ++ + LH  R
Sbjct: 600 CGFAGDASTIGLVTNMLHDGR 620



 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 126/494 (25%), Positives = 230/494 (46%), Gaps = 44/494 (8%)

Query: 6   GLS--RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           GLS  ++ +A  LF +M      P+++ ++ L+    +  + DV   + ++M++ G+  N
Sbjct: 56  GLSELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGMPHN 115

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             TYS+L+    R   +  A  ++ K+                         + GY   +
Sbjct: 116 HYTYSILINCFCRRSQLPLALAVLGKMM------------------------KLGYEPNI 151

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             ++                 +++  C S R   A  +V  M   G  P+ V++N+++HG
Sbjct: 152 VTLSS----------------LLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHG 195

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           L  H     A  L++  +  G  P   TY V+V GLC   D + A  +L  M   K    
Sbjct: 196 LFLHNKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFILLNKMEQGKLEPG 255

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
             I    +  LC  K+  + LN+   M     +P+V+T +++I+  C  GR  +A ++L+
Sbjct: 256 VLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLS 315

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           DM+  K   PD  TF+ +I   +  G++ EA   LY  M +R   P IVTY++++ G   
Sbjct: 316 DMIERKI-NPDVFTFSALIDAFVKEGKLVEA-EKLYDEMVKRSIDPSIVTYSSLINGFCM 373

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
             R++EAK++F  M+      D  +Y+ +I G C++ ++DE    + ++     + +   
Sbjct: 374 HDRLDEAKQMFEFMVSKHCFPDVVSYSTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVT 433

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y  +I+GL ++G    A     E+V  GV PNI+ YN ++DG CK     +A  +   ++
Sbjct: 434 YTTLIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQ 493

Query: 484 KNGLNPDAVTWRIL 497
           ++ + P   T+ I+
Sbjct: 494 RSKMEPTIYTYNIM 507



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 108/438 (24%), Positives = 205/438 (46%), Gaps = 45/438 (10%)

Query: 8   SRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTY 67
           ++  EA  L   M ++G  P++V+Y  +++G C+ G+ D+A+ + ++M    + P  L Y
Sbjct: 200 NKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFILLNKMEQGKLEPGVLIY 259

Query: 68  SVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIA 127
           + ++ G+ + + ++ A      L++ M E + +  N   +++L+  LC  G  ++  R+ 
Sbjct: 260 TTIIDGLCKNKHMDDA----LNLFKEM-ETKGIRPNVVTYSSLISCLCNYGRWSDASRLL 314

Query: 128 EDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKH 187
            DM + K   + F    +ID+  + G+   A ++   M KR + PS+V+Y+S+++G C H
Sbjct: 315 SDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMH 374

Query: 188 GGCMRAYQLLE----------------------------EGI-------QFGYLPSEHTY 212
                A Q+ E                            EG+       Q G + +  TY
Sbjct: 375 DRLDEAKQMFEFMVSKHCFPDVVSYSTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTY 434

Query: 213 KVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQ 272
             L++GL    D + A+++ + M+S          N  L  LC      + + V  ++ +
Sbjct: 435 TTLIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQR 494

Query: 273 TQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQ 332
           ++ +P + T N +I G CK G++E+   +  ++ + K   PD V + T+I G    G  +
Sbjct: 495 SKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNL-SLKGVKPDVVAYNTMISGFCRKGSKE 553

Query: 333 EALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIV 392
           EA + L++ M + G  P    YN ++R   R    E + E+   M   G   D++T  +V
Sbjct: 554 EA-DALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLV 612

Query: 393 IDGLCESNQLDEAKRFWD 410
            + L    +LD  K F D
Sbjct: 613 TNML-HDGRLD--KSFLD 627



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 90/328 (27%), Positives = 154/328 (46%), Gaps = 2/328 (0%)

Query: 172 PSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKV 231
           PS++ ++ ++  + K         L E+    G   + +TY +L+   C  S L  A  V
Sbjct: 79  PSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGMPHNHYTYSILINCFCRRSQLPLALAV 138

Query: 232 LQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK 291
           L  M+           +  L   C  K  +E + ++  M  T  QP+ +T NT+I+G   
Sbjct: 139 LGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFL 198

Query: 292 MGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGI 351
             +  EA+ +++ MVA K C PD VT+  ++ GL   G    A  LL + M Q    PG+
Sbjct: 199 HNKASEAVALIDRMVA-KGCQPDLVTYGVVVNGLCKRGDTDLAFILLNK-MEQGKLEPGV 256

Query: 352 VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDD 411
           + Y  ++ GL + + +++A  +F  M   G+  +  TY+ +I  LC   +  +A R   D
Sbjct: 257 LIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSD 316

Query: 412 IVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSM 471
           ++      D + ++A+I    + GK+ EA     E+V   + P+IV Y+ +I+G C    
Sbjct: 317 MIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDR 376

Query: 472 KREAYQILREMRKNGLNPDAVTWRILDK 499
             EA Q+   M      PD V++  L K
Sbjct: 377 LDEAKQMFEFMVSKHCFPDVVSYSTLIK 404



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 108/234 (46%), Gaps = 40/234 (17%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C   RV E  +LF +M  RG V N V+YTTLI G  + G+ D+A ++F EM   GV PN
Sbjct: 406 FCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDGVPPN 465

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY+ L+ G+ +   +E+A V+ F+  +R K E  +   N                   
Sbjct: 466 IMTYNTLLDGLCKNGKLEKAMVV-FEYLQRSKMEPTIYTYNI------------------ 506

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
                                MI+ +C++G+      +   +  +G+ P +V+YN+++ G
Sbjct: 507 ---------------------MIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISG 545

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
            C+ G    A  L +E  + G LP+   Y  L+     + D E + ++++ M S
Sbjct: 546 FCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRS 599



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 66/125 (52%), Gaps = 8/125 (6%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ +C   +V +   LF ++  +G  P+VV+Y T+I G+CR G  + A  +F EM+  G 
Sbjct: 508 IEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGT 567

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLS-VNNAAFANLVDSLCREGY 119
           LPNS  Y+ L+R  LR  D E +        E +KE        +A+   LV ++  +G 
Sbjct: 568 LPNSGCYNTLIRARLRDGDREAS-------AELIKEMRSCGFAGDASTIGLVTNMLHDGR 620

Query: 120 VNEVF 124
           +++ F
Sbjct: 621 LDKSF 625


>gi|449520323|ref|XP_004167183.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  217 bits (552), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 142/497 (28%), Positives = 242/497 (48%), Gaps = 71/497 (14%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC ++RVGE   +   +  RG++P++V+YTTLI G C    +  A  +F  M+  G 
Sbjct: 138 LNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKLGC 197

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN++TY  L++G+ RT ++  A     KL + M    D S+    F  +V S       
Sbjct: 198 TPNAITYGTLMKGLCRTGNISIA----LKLHQEMLN--DSSLYGINFKPVVIS------- 244

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
              + I                  +ID+LC+  R   A  +   M+ +G+TP+++SY S+
Sbjct: 245 ---YSI------------------IIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSL 283

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +HG C  G    A +L  E +  G  P+  T+ VL++ LC E  + +A+ +L+ M+ +  
Sbjct: 284 IHGFCCGGKWEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGI 343

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           V                                   P+++T N++I GFC +G +  A +
Sbjct: 344 V-----------------------------------PNLLTYNSLIEGFCLVGDLNSARE 368

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +   M   K C PD + +T +I G     +++EA+ L Y  M Q G  P + TY A+L G
Sbjct: 369 LFVSM-PSKGCEPDVICYTVLINGYCKTSKVEEAMKL-YNGMLQVGKRPDVKTYGALLTG 426

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           LF+  +V +AK++F  M   G+  D   Y I ++GLC++  L EA   ++ +   +   D
Sbjct: 427 LFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLD 486

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              +  +I GLC++GK+  A     +L    + P++V YN++I   C+     +A  + +
Sbjct: 487 IECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQ 546

Query: 481 EMRKNGLNPDAVTWRIL 497
           +M KNG  PD +T+  L
Sbjct: 547 KMEKNGCTPDKITYATL 563



 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 116/468 (24%), Positives = 224/468 (47%), Gaps = 19/468 (4%)

Query: 40  CRTGEMDV--AYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEE 97
           C+TG +    A++ F  M +    P   +++ L+ G+ + +   +    +F L+ +M+  
Sbjct: 70  CKTGNITATQAFQFFHLMMYSNPTPPLSSFTHLLSGLAKIKHYSQ----VFYLYNQMRLS 125

Query: 98  EDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHG 157
             +S +      L++ LC    V E   +   + +   + +      +I  LC   R   
Sbjct: 126 -GISPDCCTLNILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISK 184

Query: 158 ASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE--------GIQFGYLPSE 209
           A+ +   M+K G TP+ ++Y +++ GLC+ G    A +L +E        GI F   P  
Sbjct: 185 AALLFTRMQKLGCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFK--PVV 242

Query: 210 HTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVF 269
            +Y ++++ LC +   ++AR + + M  +            +   C      E   +   
Sbjct: 243 ISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEAKRLFNE 302

Query: 270 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG 329
           M+    QP+V+T N +I+  CK G++ EA  +L  M+  +   P+ +T+ ++I G   VG
Sbjct: 303 MVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQ-RGIVPNLLTYNSLIEGFCLVG 361

Query: 330 RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTY 389
            +  A  L +  MP +G  P ++ Y  ++ G  +  +VEEA +++N ML +G   D  TY
Sbjct: 362 DLNSAREL-FVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTY 420

Query: 390 AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449
             ++ GL +  ++ +AK+ +  +       D Y+Y   + GLC++G + EA+    +L  
Sbjct: 421 GALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKS 480

Query: 450 SGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
             +  +I C+N +IDG CK      A+++  ++ +  L PD VT+ I+
Sbjct: 481 YNIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNIM 528



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 106/385 (27%), Positives = 173/385 (44%), Gaps = 42/385 (10%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   R  EA  LF +MK +G  P V+SYT+LIHG+C  G+ + A ++F+EM + GV
Sbjct: 249 IDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEAKRLFNEMVNQGV 308

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +T++V                                        L+D LC+EG V
Sbjct: 309 QPNVVTFNV----------------------------------------LIDVLCKEGKV 328

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E   + E M Q   V        +I+  C  G  + A  +   M  +G  P ++ Y  +
Sbjct: 329 IEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVL 388

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++G CK      A +L    +Q G  P   TY  L+ GL     +  A+K+   M     
Sbjct: 389 INGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGI 448

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                I  I+L  LC      E + +   +     + D+   N +I+G CK G++E A +
Sbjct: 449 PGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWE 508

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +   +   +   PD VT+  +I      G++ +A N+L+Q M + G +P  +TY  ++RG
Sbjct: 509 LFEKLPQEEL-QPDVVTYNIMIHEFCRGGQVVKA-NILFQKMEKNGCTPDKITYATLIRG 566

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVAD 385
            F  +++E+  E+ + M+   V  D
Sbjct: 567 FFESKKLEKVVELLHMMVQRDVSLD 591



 Score = 47.8 bits (112), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 68/169 (40%), Gaps = 35/169 (20%)

Query: 338 LYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLC 397
            + +M     +P + ++  +L GL +++   +   ++N M   G+  D  T  I+++ LC
Sbjct: 83  FFHLMMYSNPTPPLSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGISPDCCTLNILLNCLC 142

Query: 398 ESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIV 457
             N++ E                     A++ G+ R G I                P+IV
Sbjct: 143 NVNRVGEG-------------------LAVMAGILRRGYI----------------PDIV 167

Query: 458 CYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
            Y  +I G C      +A  +   M+K G  P+A+T+  L K     GN
Sbjct: 168 TYTTLIKGLCMEHRISKAALLFTRMQKLGCTPNAITYGTLMKGLCRTGN 216


>gi|357521609|ref|XP_003631093.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525115|gb|AET05569.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 788

 Score =  217 bits (552), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 138/494 (27%), Positives = 245/494 (49%), Gaps = 9/494 (1%)

Query: 8   SRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTY 67
           S    A  L   +   G+ PN+V++ T+I+G+C  G +  A      +   G L +  TY
Sbjct: 104 SHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQFTY 163

Query: 68  SVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIA 127
             L+ G+ +   ++ A      L + M E+  +  N   ++ L+D LC++G+V++   + 
Sbjct: 164 GTLINGLSKNGQIKAA----LHLLQEM-EKSSVQPNLVMYSALIDGLCKDGFVSDALGLC 218

Query: 128 EDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKH 187
             + +   + +      +ID  C  GR    ++++  M +  + P   ++N ++  LCK 
Sbjct: 219 SQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKE 278

Query: 188 GGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC 247
           G  + A  +L    + G  P   TY  L+EG C   ++ +AR++   M+ +         
Sbjct: 279 GRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNY 338

Query: 248 NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA 307
           N+ +   C  K   E + +   +      P + + N++I+G C  GRI    K+L++M  
Sbjct: 339 NVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEM-H 397

Query: 308 GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRV 367
           G    PD VT+  +I  L   GRI EAL +L  +M ++G  P IVTYNA++ G      V
Sbjct: 398 GSAQPPDVVTYNILIDALCKEGRILEALGVLVMMM-KKGVKPNIVTYNAMMDGYCLRNNV 456

Query: 368 EEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAM 427
             AK++FN M+  G+  D   Y ++I+G C++  +DEA   + ++   + I D   Y ++
Sbjct: 457 NVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSL 516

Query: 428 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
           I GLC  G+I      L E+ DSG +P+++ YN+++D  CK     +A  + R++ + G+
Sbjct: 517 IDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQIVE-GI 575

Query: 488 NPDAVT-WRILDKL 500
            PD  T   I+D L
Sbjct: 576 WPDFYTNHAIVDNL 589



 Score =  209 bits (532), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 138/498 (27%), Positives = 238/498 (47%), Gaps = 17/498 (3%)

Query: 6   GLSRVGE---AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           GLS+ G+   A  L  +M+     PN+V Y+ LI G C+ G +  A  +  ++   G+L 
Sbjct: 169 GLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILL 228

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           +++TY+ L+ G       +    L+ K+       E++  ++  F  L+D+LC+EG + E
Sbjct: 229 DAVTYNSLIDGCCSVGRWQEVTQLLTKMVR-----ENVDPDDYTFNILIDALCKEGRILE 283

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
              +   M +     +      +++  C     H A  +   M KRGL P +++YN ++ 
Sbjct: 284 AQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLID 343

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           G CK      A  L +E      +P+  +Y  L++GLC    +   +K+L  M       
Sbjct: 344 GYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPP 403

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
                NI + ALC      E L VLV M++   +P+++T N +++G+C    +  A  + 
Sbjct: 404 DVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIF 463

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
           N MV      PD + +  +I G      + EA+ +L++ M  +   P I +YN+++ GL 
Sbjct: 464 NRMVKSGL-EPDILNYNVLINGYCKTEMVDEAI-VLFKEMRHKNLIPDIASYNSLIDGLC 521

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV---WPSNIH 419
            L R+   +E+ + M   G   D  TY I++D  C++   D+A   +  IV   WP    
Sbjct: 522 NLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQIVEGIWP---- 577

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           D Y   A++  LC+  K+  A   L  L+  G +PN+  Y ++I+  CK     EA  +L
Sbjct: 578 DFYTNHAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINALCKDGSFGEAMLLL 637

Query: 480 REMRKNGLNPDAVTWRIL 497
            +M  N   PDA+T+ I+
Sbjct: 638 SKMEDNDRPPDAITFEII 655



 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 133/503 (26%), Positives = 238/503 (47%), Gaps = 15/503 (2%)

Query: 1   MDQLCG-LSRVGE---AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMR 56
            D+L G + R+G    A  LF  ++S+G  P++ ++T LI+ Y        A+ +   + 
Sbjct: 58  FDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIATFTILINCYFHQSHTAFAFSLLATIL 117

Query: 57  HCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKE--EEDLSVNNAAFANLVDSL 114
             G  PN +T++ ++ G          N ++FK  +  +    +    +   +  L++ L
Sbjct: 118 KSGYQPNLVTFNTIINGFC-------INGMIFKALDFCQNLLAQGYLFDQFTYGTLINGL 170

Query: 115 CREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSL 174
            + G +     + ++M +            +ID LC+ G    A  +   + +RG+    
Sbjct: 171 SKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDA 230

Query: 175 VSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQF 234
           V+YNS++ G C  G      QLL + ++    P ++T+ +L++ LC E  + +A+ VL  
Sbjct: 231 VTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAM 290

Query: 235 MLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGR 294
           M  + +       N  +   C  +N  E   +   M++   +PDV+  N +I+G+CK   
Sbjct: 291 MSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKM 350

Query: 295 IEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTY 354
           ++EA+ VL   +  K   P   ++ ++I GL N GRI     LL + M      P +VTY
Sbjct: 351 VDEAM-VLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDE-MHGSAQPPDVVTY 408

Query: 355 NAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVW 414
           N ++  L +  R+ EA  V   M+  GV  +  TY  ++DG C  N ++ AK  ++ +V 
Sbjct: 409 NILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVK 468

Query: 415 PSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKRE 474
                D   Y  +I G C++  + EA+    E+    + P+I  YN +IDG C L     
Sbjct: 469 SGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPH 528

Query: 475 AYQILREMRKNGLNPDAVTWRIL 497
             ++L EM  +G +PD +T+ IL
Sbjct: 529 VQELLDEMCDSGQSPDVITYNIL 551



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 125/493 (25%), Positives = 221/493 (44%), Gaps = 42/493 (8%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C    V +A   F  M      P    +  L+    R G    A  +F +++  G+ P+ 
Sbjct: 31  CRFRNVDDAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSI 90

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
            T+++L+           A  L+  + +   +      N   F  +++  C  G + +  
Sbjct: 91  ATFTILINCYFHQSHTAFAFSLLATILKSGYQP-----NLVTFNTIINGFCINGMIFKAL 145

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
              +++     + ++F  G +I+ L ++G+   A  ++  M K  + P+LV Y++++ GL
Sbjct: 146 DFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGL 205

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
           CK G    A  L  +  + G L    TY  L++G C     ++  ++L  M+ +++VD  
Sbjct: 206 CKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMV-RENVD-- 262

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
                                           PD  T N +I+  CK GRI EA  VL  
Sbjct: 263 --------------------------------PDDYTFNILIDALCKEGRILEAQGVL-A 289

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
           M++ +   PD VT+  ++ G  +   + EA  L +  M +RG  P ++ YN ++ G  + 
Sbjct: 290 MMSKRGEKPDIVTYNALMEGYCSRENVHEAREL-FNRMVKRGLEPDVLNYNVLIDGYCKT 348

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY 424
           + V+EA  +F  +    +V    +Y  +IDGLC S ++   K+  D++   +   D   Y
Sbjct: 349 KMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTY 408

Query: 425 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484
             +I  LC+ G+I EA+  L  ++  GV PNIV YN ++DG C  +    A  I   M K
Sbjct: 409 NILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVK 468

Query: 485 NGLNPDAVTWRIL 497
           +GL PD + + +L
Sbjct: 469 SGLEPDILNYNVL 481



 Score =  165 bits (417), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 110/413 (26%), Positives = 204/413 (49%), Gaps = 8/413 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   R+ EA  +   M  RG  P++V+Y  L+ GYC    +  A ++F+ M   G+
Sbjct: 272 IDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGL 331

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ L Y+VL+ G  +T+ V+ A VL  +L  +     +L    A++ +L+D LC  G +
Sbjct: 332 EPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNK-----NLVPTIASYNSLIDGLCNSGRI 386

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           + V ++ ++M       +      +ID+LC+ GR   A  V+ +M K+G+ P++V+YN++
Sbjct: 387 SHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAM 446

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G C       A  +    ++ G  P    Y VL+ G C    +++A  + + M  K  
Sbjct: 447 MDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNL 506

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           +      N  +  LC +     +  +L  M  +   PDVIT N +++ FCK    ++A+ 
Sbjct: 507 IPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAIS 566

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +   +V G +  PD  T   I+  L    +++ A + L  ++   G SP + TY  ++  
Sbjct: 567 LFRQIVEGIW--PDFYTNHAIVDNLCKGEKLKMAEDALKHLL-MHGCSPNVQTYTILINA 623

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413
           L +     EA  + + M       D+ T+ I+I  L + N+ D+A++  ++++
Sbjct: 624 LCKDGSFGEAMLLLSKMEDNDRPPDAITFEIIIGVLLQRNETDKAEKLREEMI 676



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 98/416 (23%), Positives = 170/416 (40%), Gaps = 47/416 (11%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   R+    KL  +M      P+VV+Y  LI   C+ G +  A  V   M   GV
Sbjct: 377 IDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGV 436

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +TY+ ++ G     +V  A  +  ++ +   E + L+ N      L++  C+   V
Sbjct: 437 KPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNV-----LINGYCKTEMV 491

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E   + ++M     + +  +   +ID LC  GR      ++  M   G +P +++YN +
Sbjct: 492 DEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNIL 551

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +   CK     +A  L  + ++ G  P  +T   +V+ LC    L+ A   L+ +L    
Sbjct: 552 LDAFCKTQPFDKAISLFRQIVE-GIWPDFYTNHAIVDNLCKGEKLKMAEDALKHLLMHGC 610

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
               +   I + ALC   +  E + +L  M      PD IT   +I    +    ++A K
Sbjct: 611 SPNVQTYTILINALCKDGSFGEAMLLLSKMEDNDRPPDAITFEIIIGVLLQRNETDKAEK 670

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +  +M+A                GL+N   I+++LN  + V     + P    + +V   
Sbjct: 671 LREEMIAR---------------GLVN---IEKSLNQSHNV-----FFPASSGFQSVTE- 706

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416
            +R++        FNC                 D +  SNQ+    RF    V PS
Sbjct: 707 FYRVQASHAGSHRFNC---------------TTDPISRSNQIHH--RFTVQPVGPS 745



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 112/243 (46%), Gaps = 37/243 (15%)

Query: 264 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF 323
            ++L  +L++  QP+++T NT+INGFC  G I +AL    +++A  +   D  T+ T+I 
Sbjct: 110 FSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLF-DQFTYGTLIN 168

Query: 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 383
           GL   G+I+ AL+LL Q M +    P +V Y+A+                          
Sbjct: 169 GLSKNGQIKAALHLL-QEMEKSSVQPNLVMYSAL-------------------------- 201

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
                    IDGLC+   + +A      I     + D   Y ++I G C  G+  E    
Sbjct: 202 ---------IDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQL 252

Query: 444 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGN 503
           L ++V   V P+   +N++ID  CK     EA  +L  M K G  PD VT+  L + + +
Sbjct: 253 LTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCS 312

Query: 504 RGN 506
           R N
Sbjct: 313 REN 315


>gi|356577033|ref|XP_003556634.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Glycine max]
          Length = 757

 Score =  217 bits (552), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 146/523 (27%), Positives = 248/523 (47%), Gaps = 30/523 (5%)

Query: 7   LSRVG---EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTG-----EMDVAYKVFDEMRHC 58
           LSR+G   +A  L       G  P V+SY  ++    R       + D A +VF +M   
Sbjct: 142 LSRLGFVPKALTLLHLANRHGFAPTVLSYNAVLDALLRRSSSNHRDYDDAERVFRDMVRN 201

Query: 59  GVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREG 118
           GV PN  TY+V++RGV+   D+E+    M K+     E+E +S N   +  L+D+ C++ 
Sbjct: 202 GVSPNVYTYNVIIRGVVSQGDLEKGLGFMRKM-----EKEGISPNVVTYNTLIDASCKKK 256

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
            V E   +   M  G       +   +I+ LC  GR      +V  MR +GL P  V+YN
Sbjct: 257 KVKEAMALLRAMAVGGVAANLISYNSVINGLCGKGRMSEVGELVEEMRGKGLVPDEVTYN 316

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
           ++V+G CK G   +   LL E +  G  P+  TY  L+  +C   +L +A ++   M  +
Sbjct: 317 TLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVR 376

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
                 R     +   C      E   VL  M+ +   P V+T N +++G+C +GR++EA
Sbjct: 377 GLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNALVHGYCFLGRVQEA 436

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
           + +L  MV  +   PD V+++T+I G      + +A  +  + M ++G  P  VTY++++
Sbjct: 437 VGILRGMVE-RGLPPDVVSYSTVIAGFCRERELGKAFQM-KEEMVEKGVLPDTVTYSSLI 494

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
           +GL   +++ EA ++F  M+  G+  D  TY  +I+  C   +L +A R  D++V    +
Sbjct: 495 QGLCLQQKLVEAFDLFREMMRRGLPPDEVTYTSLINAYCVDGELSKALRLHDEMVQRGFL 554

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID-------------- 464
            DN  Y+ +I GL +  +   A   L +L      P+ V YN +I+              
Sbjct: 555 PDNVTYSVLINGLNKKARTKVAKRLLLKLFYEESVPDDVTYNTLIENCSNNEFKSVEGLV 614

Query: 465 -GACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
            G C   +  EA ++ + M +    P+A  + ++   H   GN
Sbjct: 615 KGFCMKGLMNEADRVFKTMLQRNHKPNAAIYNLMIHGHSRGGN 657



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 131/507 (25%), Positives = 243/507 (47%), Gaps = 29/507 (5%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C   +V EA  L   M   G   N++SY ++I+G C  G M    ++ +EMR  G+
Sbjct: 249 IDASCKKKKVKEAMALLRAMAVGGVAANLISYNSVINGLCGKGRMSEVGELVEEMRGKGL 308

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P+ +TY+ LV G  +  ++ +  VL+ ++  +      LS N   +  L++ +C+ G +
Sbjct: 309 VPDEVTYNTLVNGFCKEGNLHQGLVLLSEMVGK-----GLSPNVVTYTTLINCMCKAGNL 363

Query: 121 NEVFRIAEDMP-QGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           +    I + M  +G   NE      +ID  C+ G  + A +V+  M   G +PS+V+YN+
Sbjct: 364 SRAVEIFDQMRVRGLRPNER-TYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNA 422

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           +VHG C  G    A  +L   ++ G  P   +Y  ++ G C E +L KA ++ + M+ K 
Sbjct: 423 LVHGYCFLGRVQEAVGILRGMVERGLPPDVVSYSTVIAGFCRERELGKAFQMKEEMVEKG 482

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
            +  T   +  ++ LCL +   E  ++   M++    PD +T  ++IN +C  G + +AL
Sbjct: 483 VLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRGLPPDEVTYTSLINAYCVDGELSKAL 542

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           ++ ++MV   F  PD VT++ +I GL    R + A  LL ++  +    P  VTYN ++ 
Sbjct: 543 RLHDEMVQRGFL-PDNVTYSVLINGLNKKARTKVAKRLLLKLFYEESV-PDDVTYNTLIE 600

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
                     +   F  + G+            + G C    ++EA R +  ++  ++  
Sbjct: 601 NC--------SNNEFKSVEGL------------VKGFCMKGLMNEADRVFKTMLQRNHKP 640

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           +  +Y  MI G  R G +H+A +   EL  S    + V    ++    +  M  E  ++L
Sbjct: 641 NAAIYNLMIHGHSRGGNVHKAYNLYMELEHSSFACHTVAVIALVKALAREGMNDELSRLL 700

Query: 480 REMRKNGLNPDAVTWRILDKLHGNRGN 506
           + + ++    DA   ++L +++   GN
Sbjct: 701 QNILRSCRLNDAKVAKVLVEVNFKEGN 727



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 109/452 (24%), Positives = 199/452 (44%), Gaps = 62/452 (13%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           +C    +  A ++F  M+ RG  PN  +YTTLI G+C+ G M+ AYKV  EM   G  P+
Sbjct: 357 MCKAGNLSRAVEIFDQMRVRGLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPS 416

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY+ LV G      V+ A  ++  + ER      L  +  +++ ++   CRE  + + 
Sbjct: 417 VVTYNALVHGYCFLGRVQEAVGILRGMVER-----GLPPDVVSYSTVIAGFCRERELGKA 471

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           F++ E+M +   + +      +I  LC   +   A  +   M +RGL P  V+Y S+++ 
Sbjct: 472 FQMKEEMVEKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRGLPPDEVTYTSLINA 531

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            C  G   +A +L +E +Q G+LP   TY VL+ GL  ++  + A+++L  +  ++ V  
Sbjct: 532 YCVDGELSKALRLHDEMVQRGFLPDNVTYSVLINGLNKKARTKVAKRLLLKLFYEESVPD 591

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               N       LI+N +                +  ++  ++ GFC  G + EA +V  
Sbjct: 592 DVTYN------TLIENCS--------------NNEFKSVEGLVKGFCMKGLMNEADRVFK 631

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            M+  +   P+A  +  +I G    G + +A N LY  +    ++   V   A+++ L  
Sbjct: 632 TMLQ-RNHKPNAAIYNLMIHGHSRGGNVHKAYN-LYMELEHSSFACHTVAVIALVKAL-- 687

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
                 A+E  N                           DE  R   +I+    ++D  V
Sbjct: 688 ------AREGMN---------------------------DELSRLLQNILRSCRLNDAKV 714

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN 455
              +++   + G +   ++ L E+   G+ P+
Sbjct: 715 AKVLVEVNFKEGNMDAVLNVLTEMAKDGLLPD 746



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 133/269 (49%), Gaps = 7/269 (2%)

Query: 234 FMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMG 293
           F L       + + ++ +++L  +    + L +L    +    P V++ N V++   +  
Sbjct: 122 FHLCSSPFSSSAVFDLVVKSLSRLGFVPKALTLLHLANRHGFAPTVLSYNAVLDALLRRS 181

Query: 294 R-----IEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYS 348
                  ++A +V  DMV     +P+  T+  II G+++ G +++ L  + + M + G S
Sbjct: 182 SSNHRDYDDAERVFRDMVRNG-VSPNVYTYNVIIRGVVSQGDLEKGLGFMRK-MEKEGIS 239

Query: 349 PGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRF 408
           P +VTYN ++    + ++V+EA  +   M   GV A+  +Y  VI+GLC   ++ E    
Sbjct: 240 PNVVTYNTLIDASCKKKKVKEAMALLRAMAVGGVAANLISYNSVINGLCGKGRMSEVGEL 299

Query: 409 WDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACK 468
            +++     + D   Y  ++ G C+ G +H+ +  L E+V  G++PN+V Y  +I+  CK
Sbjct: 300 VEEMRGKGLVPDEVTYNTLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCK 359

Query: 469 LSMKREAYQILREMRKNGLNPDAVTWRIL 497
                 A +I  +MR  GL P+  T+  L
Sbjct: 360 AGNLSRAVEIFDQMRVRGLRPNERTYTTL 388


>gi|11994279|dbj|BAB01462.1| unnamed protein product [Arabidopsis thaliana]
          Length = 648

 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 139/486 (28%), Positives = 246/486 (50%), Gaps = 15/486 (3%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M+  G   ++ + T +I+ YCR  ++  A+ V       G  P+++T+S LV G      
Sbjct: 125 MELNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGR 184

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
           V  A  L+ ++ E MK+  DL       + L++ LC +G V+E   + + M +     +E
Sbjct: 185 VSEAVALVDRMVE-MKQRPDL----VTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDE 239

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
              G +++ LC+SG +  A  +   M +R +  S+V Y+ ++  LCK G    A  L  E
Sbjct: 240 VTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNE 299

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR----TRICNIYLRALC 255
               G      TY  L+ GLC +   +   K+L+ M+ +  +      + + +++++   
Sbjct: 300 MEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGK 359

Query: 256 LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA 315
           L++   EL N    M+     PD IT N++I+GFCK   + EA ++  D++  K C PD 
Sbjct: 360 LLE-AKELYNE---MITRGIAPDTITYNSLIDGFCKENCLHEANQMF-DLMVSKGCEPDI 414

Query: 316 VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN 375
           VT++ +I       R+ + + L  ++   +G  P  +TYN ++ G  +  ++  AKE+F 
Sbjct: 415 VTYSILINSYCKAKRVDDGMRLFREI-SSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQ 473

Query: 376 CMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG 435
            M+  GV     TY I++DGLC++ +L++A   ++ +          +Y  +I G+C + 
Sbjct: 474 EMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNAS 533

Query: 436 KIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWR 495
           K+ +A      L D GV P++V YNV+I G CK     EA  + R+M+++G  PD  T+ 
Sbjct: 534 KVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYN 593

Query: 496 ILDKLH 501
           IL + H
Sbjct: 594 ILIRAH 599



 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 126/507 (24%), Positives = 239/507 (47%), Gaps = 54/507 (10%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C   RV EA  L   M      P++V+ +TLI+G C  G +  A  + D M   G  P+
Sbjct: 179 FCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPD 238

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY  ++  + ++ +    + L   L+ +M EE ++  +   ++ ++DSLC++G  ++ 
Sbjct: 239 EVTYGPVLNRLCKSGN----SALALDLFRKM-EERNIKASVVQYSIVIDSLCKDGSFDDA 293

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             +  +M       +      +I  LC  G+    ++++  M  R + P +V++++++  
Sbjct: 294 LSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDV 353

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
             K G  + A +L  E I  G  P   TY  L++G C E+ L +A ++   M+SK     
Sbjct: 354 FVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSK----- 408

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                                          C+PD++T + +IN +CK  R+++ +++  
Sbjct: 409 ------------------------------GCEPDIVTYSILINSYCKAKRVDDGMRLFR 438

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           + ++ K   P+ +T+ T++ G    G++  A   L+Q M  RG  P +VTY  +L GL  
Sbjct: 439 E-ISSKGLIPNTITYNTLVLGFCQSGKLNAAKE-LFQEMVSRGVPPSVVTYGILLDGLCD 496

Query: 364 LRRVEEAKEVFNCM------LGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 417
              + +A E+F  M      LGIG+      Y I+I G+C ++++D+A   +  +     
Sbjct: 497 NGELNKALEIFEKMQKSRMTLGIGI------YNIIIHGMCNASKVDDAWSLFCSLSDKGV 550

Query: 418 IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQ 477
             D   Y  MI GLC+ G + EA     ++ + G TP+   YN++I      S    + +
Sbjct: 551 KPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVE 610

Query: 478 ILREMRKNGLNPDAVTWRILDKLHGNR 504
           ++ EM+  G + D+ T +++  +  +R
Sbjct: 611 LIEEMKVCGFSADSSTIKMVIDMLSDR 637



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 120/494 (24%), Positives = 228/494 (46%), Gaps = 44/494 (8%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           +V +A  LF  M     +P  + +  L     RT + D+       M   G+  +  T +
Sbjct: 79  KVNDAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMT 138

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
           +++    R + +  A  ++ + W+   E + ++     F+ LV+  C EG V+E   + +
Sbjct: 139 IMINCYCRKKKLLFAFSVLGRAWKLGYEPDTIT-----FSTLVNGFCLEGRVSEAVALVD 193

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
            M + K   +      +I+ LC  GR   A  ++  M + G  P  V+Y  +++ LCK G
Sbjct: 194 RMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSG 253

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
               A  L  +  +     S   Y ++++ LC +   + A  +                 
Sbjct: 254 NSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLF---------------- 297

Query: 249 IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 308
                     N  E+  +         + DV+T +++I G C  G+ ++  K+L +M+ G
Sbjct: 298 ----------NEMEMKGI---------KADVVTYSSLIGGLCNDGKWDDGAKMLREMI-G 337

Query: 309 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE 368
           +   PD VTF+ +I   +  G++ EA  L Y  M  RG +P  +TYN+++ G  +   + 
Sbjct: 338 RNIIPDVVTFSALIDVFVKEGKLLEAKEL-YNEMITRGIAPDTITYNSLIDGFCKENCLH 396

Query: 369 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI 428
           EA ++F+ M+  G   D  TY+I+I+  C++ ++D+  R + +I     I +   Y  ++
Sbjct: 397 EANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLV 456

Query: 429 KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLN 488
            G C+SGK++ A     E+V  GV P++V Y +++DG C      +A +I  +M+K+ + 
Sbjct: 457 LGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMT 516

Query: 489 PDAVTWRILDKLHG 502
                + I+  +HG
Sbjct: 517 LGIGIYNII--IHG 528



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 103/410 (25%), Positives = 187/410 (45%), Gaps = 45/410 (10%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC      +A  LF +M+ +G   +VV+Y++LI G C  G+ D   K+  EM    +
Sbjct: 281 IDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNI 340

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P+ +T+S L+   ++   +  A  L  ++  R      ++ +   + +L+D  C+E  +
Sbjct: 341 IPDVVTFSALIDVFVKEGKLLEAKELYNEMITR-----GIAPDTITYNSLIDGFCKENCL 395

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E  ++ + M       +      +I+S C++ R     R+   +  +GL P+ ++YN++
Sbjct: 396 HEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTL 455

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           V G C+ G    A +L +E +  G  PS  TY +L++GLC   +L KA ++ + M   + 
Sbjct: 456 VLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRM 515

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                I NI +  +C      +  ++   +     +PDV+T N +I G CK G + EA  
Sbjct: 516 TLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEA-- 573

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
                                              ++L++ M + G +P   TYN ++R 
Sbjct: 574 -----------------------------------DMLFRKMKEDGCTPDDFTYNILIRA 598

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD 410
                 +  + E+   M   G  ADS+T  +VID L +  +LD  K F D
Sbjct: 599 HLGGSGLISSVELIEEMKVCGFSADSSTIKMVIDMLSD-RRLD--KSFLD 645


>gi|15228763|ref|NP_188886.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75223290|sp|Q6NQ83.1|PP247_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g22470, mitochondrial; Flags: Precursor
 gi|34365775|gb|AAQ65199.1| At3g22470 [Arabidopsis thaliana]
 gi|51968798|dbj|BAD43091.1| hypothetical protein [Arabidopsis thaliana]
 gi|332643122|gb|AEE76643.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 619

 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 140/486 (28%), Positives = 246/486 (50%), Gaps = 15/486 (3%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M+  G   ++ + T +I+ YCR  ++  A+ V       G  P+++T+S LV G      
Sbjct: 96  MELNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGR 155

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
           V  A  L+ ++ E MK+  DL       + L++ LC +G V+E   + + M +     +E
Sbjct: 156 VSEAVALVDRMVE-MKQRPDL----VTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDE 210

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
              G +++ LC+SG +  A  +   M +R +  S+V Y+ ++  LCK G    A  L  E
Sbjct: 211 VTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNE 270

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD----VDRTRICNIYLRALC 255
               G      TY  L+ GLC +   +   K+L+ M+ +      V  + + +++++   
Sbjct: 271 MEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGK 330

Query: 256 LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA 315
           L++   EL N    M+     PD IT N++I+GFCK   + EA ++  D++  K C PD 
Sbjct: 331 LLE-AKELYNE---MITRGIAPDTITYNSLIDGFCKENCLHEANQMF-DLMVSKGCEPDI 385

Query: 316 VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN 375
           VT++ +I       R+ + + L  ++   +G  P  +TYN ++ G  +  ++  AKE+F 
Sbjct: 386 VTYSILINSYCKAKRVDDGMRLFREI-SSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQ 444

Query: 376 CMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG 435
            M+  GV     TY I++DGLC++ +L++A   ++ +          +Y  +I G+C + 
Sbjct: 445 EMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNAS 504

Query: 436 KIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWR 495
           K+ +A      L D GV P++V YNV+I G CK     EA  + R+M+++G  PD  T+ 
Sbjct: 505 KVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYN 564

Query: 496 ILDKLH 501
           IL + H
Sbjct: 565 ILIRAH 570



 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 126/507 (24%), Positives = 239/507 (47%), Gaps = 54/507 (10%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C   RV EA  L   M      P++V+ +TLI+G C  G +  A  + D M   G  P+
Sbjct: 150 FCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPD 209

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY  ++  + ++ +    + L   L+ +M EE ++  +   ++ ++DSLC++G  ++ 
Sbjct: 210 EVTYGPVLNRLCKSGN----SALALDLFRKM-EERNIKASVVQYSIVIDSLCKDGSFDDA 264

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             +  +M       +      +I  LC  G+    ++++  M  R + P +V++++++  
Sbjct: 265 LSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDV 324

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
             K G  + A +L  E I  G  P   TY  L++G C E+ L +A ++   M+SK     
Sbjct: 325 FVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSK----- 379

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                                          C+PD++T + +IN +CK  R+++ +++  
Sbjct: 380 ------------------------------GCEPDIVTYSILINSYCKAKRVDDGMRLFR 409

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           + ++ K   P+ +T+ T++ G    G++  A   L+Q M  RG  P +VTY  +L GL  
Sbjct: 410 E-ISSKGLIPNTITYNTLVLGFCQSGKLNAAKE-LFQEMVSRGVPPSVVTYGILLDGLCD 467

Query: 364 LRRVEEAKEVFNCM------LGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 417
              + +A E+F  M      LGIG+      Y I+I G+C ++++D+A   +  +     
Sbjct: 468 NGELNKALEIFEKMQKSRMTLGIGI------YNIIIHGMCNASKVDDAWSLFCSLSDKGV 521

Query: 418 IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQ 477
             D   Y  MI GLC+ G + EA     ++ + G TP+   YN++I      S    + +
Sbjct: 522 KPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVE 581

Query: 478 ILREMRKNGLNPDAVTWRILDKLHGNR 504
           ++ EM+  G + D+ T +++  +  +R
Sbjct: 582 LIEEMKVCGFSADSSTIKMVIDMLSDR 608



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 120/494 (24%), Positives = 228/494 (46%), Gaps = 44/494 (8%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           +V +A  LF  M     +P  + +  L     RT + D+       M   G+  +  T +
Sbjct: 50  KVNDAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMT 109

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
           +++    R + +  A  ++ + W+   E + ++     F+ LV+  C EG V+E   + +
Sbjct: 110 IMINCYCRKKKLLFAFSVLGRAWKLGYEPDTIT-----FSTLVNGFCLEGRVSEAVALVD 164

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
            M + K   +      +I+ LC  GR   A  ++  M + G  P  V+Y  +++ LCK G
Sbjct: 165 RMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSG 224

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
               A  L  +  +     S   Y ++++ LC +   + A  +                 
Sbjct: 225 NSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLF---------------- 268

Query: 249 IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 308
                     N  E+  +         + DV+T +++I G C  G+ ++  K+L +M+ G
Sbjct: 269 ----------NEMEMKGI---------KADVVTYSSLIGGLCNDGKWDDGAKMLREMI-G 308

Query: 309 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE 368
           +   PD VTF+ +I   +  G++ EA  L Y  M  RG +P  +TYN+++ G  +   + 
Sbjct: 309 RNIIPDVVTFSALIDVFVKEGKLLEAKEL-YNEMITRGIAPDTITYNSLIDGFCKENCLH 367

Query: 369 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI 428
           EA ++F+ M+  G   D  TY+I+I+  C++ ++D+  R + +I     I +   Y  ++
Sbjct: 368 EANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLV 427

Query: 429 KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLN 488
            G C+SGK++ A     E+V  GV P++V Y +++DG C      +A +I  +M+K+ + 
Sbjct: 428 LGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMT 487

Query: 489 PDAVTWRILDKLHG 502
                + I+  +HG
Sbjct: 488 LGIGIYNII--IHG 499



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 103/410 (25%), Positives = 187/410 (45%), Gaps = 45/410 (10%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC      +A  LF +M+ +G   +VV+Y++LI G C  G+ D   K+  EM    +
Sbjct: 252 IDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNI 311

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P+ +T+S L+   ++   +  A  L  ++  R      ++ +   + +L+D  C+E  +
Sbjct: 312 IPDVVTFSALIDVFVKEGKLLEAKELYNEMITR-----GIAPDTITYNSLIDGFCKENCL 366

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E  ++ + M       +      +I+S C++ R     R+   +  +GL P+ ++YN++
Sbjct: 367 HEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTL 426

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           V G C+ G    A +L +E +  G  PS  TY +L++GLC   +L KA ++ + M   + 
Sbjct: 427 VLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRM 486

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                I NI +  +C      +  ++   +     +PDV+T N +I G CK G + EA  
Sbjct: 487 TLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEA-- 544

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
                                              ++L++ M + G +P   TYN ++R 
Sbjct: 545 -----------------------------------DMLFRKMKEDGCTPDDFTYNILIRA 569

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD 410
                 +  + E+   M   G  ADS+T  +VID L +  +LD  K F D
Sbjct: 570 HLGGSGLISSVELIEEMKVCGFSADSSTIKMVIDMLSD-RRLD--KSFLD 616


>gi|224130828|ref|XP_002328386.1| predicted protein [Populus trichocarpa]
 gi|222838101|gb|EEE76466.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 140/474 (29%), Positives = 234/474 (49%), Gaps = 7/474 (1%)

Query: 24  GHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERA 83
           G   NV S   LI+  CR   +D A  V  +M   G+ P+++T++ L+ G+     ++ A
Sbjct: 126 GVTHNVYSLNVLINCLCRLSHVDFAVSVMGKMFKLGIQPDAITFNTLINGLCNEGKIKEA 185

Query: 84  NVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACG 143
             L  ++     E   +S N      +++ LC+ G      R+   M Q +         
Sbjct: 186 VGLFNEMVWSGHEPNVISYNT-----VINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYN 240

Query: 144 HMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQF 203
            +IDSLC+    + A   +  M  RG+ P +V+YN+I+HG C  G    A +L +E +  
Sbjct: 241 TIIDSLCKDRLVNEAVEFLSEMVDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGR 300

Query: 204 GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTEL 263
             +P   T+ +LV+GLC E  + +AR V + M  K         N  +   CL     E 
Sbjct: 301 NVMPDTVTFNILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNALMDGYCLHNQMDEA 360

Query: 264 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF 323
           + VL  M+   C P++ + N +ING+CK  R+ EA ++L++M + K   PD VT++T++ 
Sbjct: 361 IKVLGIMIGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEM-SEKNLTPDTVTYSTLMQ 419

Query: 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 383
           GL  VGR +EALN L++ M   G  P ++ Y+ +L G  +   ++EA ++   M    + 
Sbjct: 420 GLCQVGRPREALN-LFKEMCSSGLLPDLMAYSILLDGFCKHGHLDEALKLLKEMHERRIK 478

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
            +   Y I+I G+  + +L+ AK  +  +       D + Y  MIKGL + G   EA  F
Sbjct: 479 PNIILYTILIRGMFIAGKLEVAKELFSKLSADGIRPDIWTYNVMIKGLLKEGLSDEAYEF 538

Query: 444 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
             ++ D G  P+   YNV+I G  +      A Q++ EM     + D+ T+++L
Sbjct: 539 FRKMEDDGFLPDSCSYNVIIQGFLQNQDSSTAIQLIDEMVGKRFSADSSTFQML 592



 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 110/391 (28%), Positives = 207/391 (52%), Gaps = 2/391 (0%)

Query: 107 FANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMR 166
           F   + S+ ++   +    +   M      +  ++   +I+ LCR      A  V+  M 
Sbjct: 99  FGKFLGSIAKKKQYSSAVSLCNQMDLFGVTHNVYSLNVLINCLCRLSHVDFAVSVMGKMF 158

Query: 167 KRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLE 226
           K G+ P  +++N++++GLC  G    A  L  E +  G+ P+  +Y  ++ GLC   +  
Sbjct: 159 KLGIQPDAITFNTLINGLCNEGKIKEAVGLFNEMVWSGHEPNVISYNTVINGLCKNGNTI 218

Query: 227 KARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVI 286
            A +V + M   +        N  + +LC  +   E +  L  M+     PDV+T NT++
Sbjct: 219 MAVRVFRKMEQNRGKPNVVTYNTIIDSLCKDRLVNEAVEFLSEMVDRGIPPDVVTYNTIL 278

Query: 287 NGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
           +GFC +G++ EA ++  +MV G+   PD VTF  ++ GL   G + EA   + + M ++G
Sbjct: 279 HGFCSLGQLNEATRLFKEMV-GRNVMPDTVTFNILVDGLCKEGMVSEA-RCVSETMTEKG 336

Query: 347 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
             P   TYNA++ G     +++EA +V   M+G G   + ++Y I+I+G C+S +++EAK
Sbjct: 337 AEPNAYTYNALMDGYCLHNQMDEAIKVLGIMIGKGCAPNLSSYNILINGYCKSKRMNEAK 396

Query: 407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466
           R   ++   +   D   Y+ +++GLC+ G+  EA++   E+  SG+ P+++ Y++++DG 
Sbjct: 397 RLLSEMSEKNLTPDTVTYSTLMQGLCQVGRPREALNLFKEMCSSGLLPDLMAYSILLDGF 456

Query: 467 CKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           CK     EA ++L+EM +  + P+ + + IL
Sbjct: 457 CKHGHLDEALKLLKEMHERRIKPNIILYTIL 487



 Score =  197 bits (501), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 125/461 (27%), Positives = 228/461 (49%), Gaps = 7/461 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC LS V  A  +   M   G  P+ +++ TLI+G C  G++  A  +F+EM   G  PN
Sbjct: 141 LCRLSHVDFAVSVMGKMFKLGIQPDAITFNTLINGLCNEGKIKEAVGLFNEMVWSGHEPN 200

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            ++Y+ ++ G+ +  +     ++  +++ +M E+     N   +  ++DSLC++  VNE 
Sbjct: 201 VISYNTVINGLCKNGNT----IMAVRVFRKM-EQNRGKPNVVTYNTIIDSLCKDRLVNEA 255

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
                +M       +      ++   C  G+ + A+R+   M  R + P  V++N +V G
Sbjct: 256 VEFLSEMVDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPDTVTFNILVDG 315

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LCK G    A  + E   + G  P+ +TY  L++G C  + +++A KVL  M+ K     
Sbjct: 316 LCKEGMVSEARCVSETMTEKGAEPNAYTYNALMDGYCLHNQMDEAIKVLGIMIGKGCAPN 375

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               NI +   C  K   E   +L  M +    PD +T +T++ G C++GR  EAL +  
Sbjct: 376 LSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGRPREALNLFK 435

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           +M +     PD + ++ ++ G    G + EAL LL + M +R   P I+ Y  ++RG+F 
Sbjct: 436 EMCSSGLL-PDLMAYSILLDGFCKHGHLDEALKLLKE-MHERRIKPNIILYTILIRGMFI 493

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
             ++E AKE+F+ +   G+  D  TY ++I GL +    DEA  F+  +     + D+  
Sbjct: 494 AGKLEVAKELFSKLSADGIRPDIWTYNVMIKGLLKEGLSDEAYEFFRKMEDDGFLPDSCS 553

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
           Y  +I+G  ++     A+  + E+V    + +   + +++D
Sbjct: 554 YNVIIQGFLQNQDSSTAIQLIDEMVGKRFSADSSTFQMLLD 594



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 102/335 (30%), Positives = 163/335 (48%), Gaps = 2/335 (0%)

Query: 163 YVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGE 222
           Y M +    PS+V +   +  + K      A  L  +   FG   + ++  VL+  LC  
Sbjct: 85  YRMVRMNPRPSVVEFGKFLGSIAKKKQYSSAVSLCNQMDLFGVTHNVYSLNVLINCLCRL 144

Query: 223 SDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITL 282
           S ++ A  V+  M            N  +  LC      E + +   M+ +  +P+VI+ 
Sbjct: 145 SHVDFAVSVMGKMFKLGIQPDAITFNTLINGLCNEGKIKEAVGLFNEMVWSGHEPNVISY 204

Query: 283 NTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVM 342
           NTVING CK G    A++V   M   +   P+ VT+ TII  L     + EA+  L + M
Sbjct: 205 NTVINGLCKNGNTIMAVRVFRKMEQNR-GKPNVVTYNTIIDSLCKDRLVNEAVEFLSE-M 262

Query: 343 PQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQL 402
             RG  P +VTYN +L G   L ++ EA  +F  M+G  V+ D+ T+ I++DGLC+   +
Sbjct: 263 VDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPDTVTFNILVDGLCKEGMV 322

Query: 403 DEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVV 462
            EA+   + +       + Y Y A++ G C   ++ EA+  L  ++  G  PN+  YN++
Sbjct: 323 SEARCVSETMTEKGAEPNAYTYNALMDGYCLHNQMDEAIKVLGIMIGKGCAPNLSSYNIL 382

Query: 463 IDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           I+G CK     EA ++L EM +  L PD VT+  L
Sbjct: 383 INGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTL 417



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 103/394 (26%), Positives = 188/394 (47%), Gaps = 42/394 (10%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    V EA +   +M  RG  P+VV+Y T++HG+C  G+++ A ++F EM    V
Sbjct: 243 IDSLCKDRLVNEAVEFLSEMVDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRNV 302

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P+++T+++LV G+ +   V  A  +   + E+  E      N   +  L+D  C    +
Sbjct: 303 MPDTVTFNILVDGLCKEGMVSEARCVSETMTEKGAEP-----NAYTYNALMDGYCLHNQM 357

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E  ++   M          +   +I+  C+S R + A R++  M ++ LTP  V+Y+++
Sbjct: 358 DEAIKVLGIMIGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTL 417

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GLC+ G    A  L +E    G LP    Y +L++G C    L++A K+L      K+
Sbjct: 418 MQGLCQVGRPREALNLFKEMCSSGLLPDLMAYSILLDGFCKHGHLDEALKLL------KE 471

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           +   RI                             +P++I    +I G    G++E A +
Sbjct: 472 MHERRI-----------------------------KPNIILYTILIRGMFIAGKLEVAKE 502

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           + + + A     PD  T+  +I GLL  G   EA    ++ M   G+ P   +YN +++G
Sbjct: 503 LFSKLSADGI-RPDIWTYNVMIKGLLKEGLSDEAYE-FFRKMEDDGFLPDSCSYNVIIQG 560

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVID 394
             + +    A ++ + M+G    ADS+T+ +++D
Sbjct: 561 FLQNQDSSTAIQLIDEMVGKRFSADSSTFQMLLD 594


>gi|449524916|ref|XP_004169467.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g74580-like [Cucumis
           sativus]
          Length = 877

 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 136/507 (26%), Positives = 244/507 (48%), Gaps = 8/507 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M   C   R   A +L  +M  +G   N VSY  +I G+ +      AY +FDEM   G+
Sbjct: 153 MKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQGI 212

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ LT++ L+  + +  +V+ +  L  K+ +R      +  N   F   +  LCR+G +
Sbjct: 213 CPDILTFNKLIHVLCKKGNVQESEKLFSKVMKR-----GVCPNLFTFNIFIQGLCRKGAI 267

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E  R+ E +       +  +   +I   C+  +   A   ++ M   G+ P+  +YN+I
Sbjct: 268 DEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTI 327

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++G CK G    A ++L + +  G++P E TY  L+ GLC + D+ +A  V    + K  
Sbjct: 328 INGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGF 387

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                + N  ++ L       + L ++  M++  C PD+ T N V+NG CKMG + +A  
Sbjct: 388 KHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANG 447

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +LND +A K C PD  TF T+I G      + +A+ +L   M   G +P ++TYN +L G
Sbjct: 448 ILNDAIA-KGCIPDIFTFNTLIDGYCKQRNMDKAIEIL-DTMLSHGITPDVITYNTLLNG 505

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L + R+++   + F  ML  G   +  TY I+I+  C+  ++ EA   + ++       D
Sbjct: 506 LCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGLTPD 565

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYEL-VDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
                 +I GLC +G++ +A      +  +   + +   +N++I+  C       A ++ 
Sbjct: 566 IVTLCTLICGLCSNGELDKAYELFVTIEKEYKFSYSTAIFNIMINAFCXKLNVSMAEKLF 625

Query: 480 REMRKNGLNPDAVTWRILDKLHGNRGN 506
            +M  +   PD  T+R++   +   GN
Sbjct: 626 HKMGGSDCAPDNYTYRVMIDSYCKTGN 652



 Score =  207 bits (526), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 133/490 (27%), Positives = 234/490 (47%), Gaps = 8/490 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC    V E+ KLF  +  RG  PN+ ++   I G CR G +D A ++ + +   G+ P+
Sbjct: 226 LCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPD 285

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            ++Y+ L+ G  +   +  A   + K+     E  + + N      +++  C+ G +   
Sbjct: 286 VISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNT-----IINGFCKAGMMQNA 340

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            +I  D      + +EF    +I+ LC  G  + A  V Y   ++G   S++ YN++V G
Sbjct: 341 DKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKG 400

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           L K G  ++A QL+++ ++ G  P   TY ++V GLC    L  A  +L   ++K  +  
Sbjct: 401 LSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPD 460

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               N  +   C  +N  + + +L  ML     PDVIT NT++NG CK  +++  +    
Sbjct: 461 IFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFK 520

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            M+  K C P+ +T+  +I       ++ EA+  L++ M  RG +P IVT   ++ GL  
Sbjct: 521 AMLE-KGCTPNIITYNILIESFCKDRKVSEAME-LFKEMKTRGLTPDIVTLCTLICGLCS 578

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTT-YAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
              +++A E+F  +      + ST  + I+I+  C    +  A++ +  +       DNY
Sbjct: 579 NGELDKAYELFVTIEKEYKFSYSTAIFNIMINAFCXKLNVSMAEKLFHKMGGSDCAPDNY 638

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
            Y  MI   C++G I  A  FL E +  G+ P+      V++  C      EA  I+  M
Sbjct: 639 TYRVMIDSYCKTGNIDLAHTFLLENISKGLVPSFTTCGKVLNCLCVTHRLSEAVVIINLM 698

Query: 483 RKNGLNPDAV 492
            +NG+ P+ V
Sbjct: 699 VQNGIVPEEV 708



 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 121/469 (25%), Positives = 233/469 (49%), Gaps = 13/469 (2%)

Query: 32  YTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLW 91
           Y  ++  Y R G++  A  VF+ M      P+  +Y+ ++  ++      +A+    K++
Sbjct: 79  YIGIMRDYGRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAH----KVY 134

Query: 92  ERMKEEEDLSVNNAAFANLV--DSLCREGYVNEVFRIAEDMP-QGKSVNEEFACGHMIDS 148
            RMK   D+ +    + + +   S C  G      R+  +MP QG   N    C  +I  
Sbjct: 135 MRMK---DIGIYPDVYTHTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCA-VISG 190

Query: 149 LCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPS 208
             +      A  +   M K+G+ P ++++N ++H LCK G    + +L  + ++ G  P+
Sbjct: 191 FYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPN 250

Query: 209 EHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLV 268
             T+ + ++GLC +  +++A ++L+ ++S+         N  +   C      E    L 
Sbjct: 251 LFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLH 310

Query: 269 FMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNV 328
            M+ +  +P+  T NT+INGFCK G ++ A K+L D +   F  PD  T++++I GL N 
Sbjct: 311 KMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGF-IPDEFTYSSLINGLCND 369

Query: 329 GRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTT 388
           G +  A+ + Y+ M ++G+   I+ YN +++GL +   V +A ++   M+  G   D  T
Sbjct: 370 GDMNRAMAVFYEAM-EKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWT 428

Query: 389 YAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELV 448
           Y +V++GLC+   L +A    +D +    I D + +  +I G C+   + +A+  L  ++
Sbjct: 429 YNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTML 488

Query: 449 DSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
             G+TP+++ YN +++G CK           + M + G  P+ +T+ IL
Sbjct: 489 SHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNIL 537



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 100/417 (23%), Positives = 204/417 (48%), Gaps = 15/417 (3%)

Query: 88  FKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMID 147
            K++ ++K E+        +  +++ L   G    +  +  +M   K+V+ +   G  I 
Sbjct: 24  LKMFNQVKTEDGFKHTLETYKCMIEKLGLHGKFEAMEDVLAEMR--KNVDSKMLEGVYIG 81

Query: 148 SLCRSGRNHGASRVVYVMRKRGL---TPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
            +   GR       V V  +       PS+ SYN+I++ L ++G   +A+++       G
Sbjct: 82  IMRDYGRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIG 141

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK-DVDRTRICNI---YLRALCLIKNP 260
             P  +T+ + ++  C       A ++L  M  +  + +    C +   + +  C I   
Sbjct: 142 IYPDVYTHTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQI--- 198

Query: 261 TELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTT 320
            E  ++   ML+    PD++T N +I+  CK G ++E+ K+ + ++    C P+  TF  
Sbjct: 199 -EAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVC-PNLFTFNI 256

Query: 321 IIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI 380
            I GL   G I EA  LL  ++ + G +P +++YN ++ G  +  ++ EA+   + M+  
Sbjct: 257 FIQGLCRKGAIDEAARLLESIVSE-GLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNS 315

Query: 381 GVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEA 440
           GV  +  TY  +I+G C++  +  A +   D ++   I D + Y+++I GLC  G ++ A
Sbjct: 316 GVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRA 375

Query: 441 VHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           +   YE ++ G   +I+ YN ++ G  K  +  +A Q++++M ++G +PD  T+ ++
Sbjct: 376 MAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLV 432



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 106/238 (44%), Gaps = 6/238 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C    + +A ++   M S G  P+V++Y TL++G C+  ++D     F  M   G 
Sbjct: 468 IDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGC 527

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +TY++L+    + R V  A     +L++ MK    L+ +      L+  LC  G +
Sbjct: 528 TPNIITYNILIESFCKDRKVSEA----MELFKEMK-TRGLTPDIVTLCTLICGLCSNGEL 582

Query: 121 NEVFRIAEDMPQGKSVNEEFACGH-MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           ++ + +   + +    +   A  + MI++ C       A ++ + M      P   +Y  
Sbjct: 583 DKAYELFVTIEKEYKFSYSTAIFNIMINAFCXKLNVSMAEKLFHKMGGSDCAPDNYTYRV 642

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
           ++   CK G    A+  L E I  G +PS  T   ++  LC    L +A  ++  M+ 
Sbjct: 643 MIDSYCKTGNIDLAHTFLLENISKGLVPSFTTCGKVLNCLCVTHRLSEAVVIINLMVQ 700



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 94/185 (50%), Gaps = 10/185 (5%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C   +V EA +LF +MK+RG  P++V+  TLI G C  GE+D AY++F  +     
Sbjct: 538 IESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYELFVTIEK--- 594

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMF-KLWERMKEEEDLSVNNAAFANLVDSLCREGY 119
                +YS  +  ++      + NV M  KL+ +M    D + +N  +  ++DS C+ G 
Sbjct: 595 -EYKFSYSTAIFNIMINAFCXKLNVSMAEKLFHKMGGS-DCAPDNYTYRVMIDSYCKTGN 652

Query: 120 VNEVFR-IAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
           ++     + E++ +G  V     CG +++ LC + R   A  ++ +M + G+ P  V  N
Sbjct: 653 IDLAHTFLLENISKG-LVPSFTTCGKVLNCLCVTHRLSEAVVIINLMVQNGIVPEEV--N 709

Query: 179 SIVHG 183
           SI   
Sbjct: 710 SIFEA 714



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 70/157 (44%), Gaps = 8/157 (5%)

Query: 354 YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFW---- 409
           Y  ++R   R  +V+EA  VF  M          +Y  +++ L E     +A + +    
Sbjct: 79  YIGIMRDYGRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMK 138

Query: 410 DDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKL 469
           D  ++P    D Y +   +K  C +G+   A+  L  +   G   N V Y  VI G  K 
Sbjct: 139 DIGIYP----DVYTHTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKE 194

Query: 470 SMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           + + EAY +  EM K G+ PD +T+  L  +   +GN
Sbjct: 195 NCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKKGN 231


>gi|356554658|ref|XP_003545661.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Glycine max]
          Length = 675

 Score =  216 bits (550), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 138/499 (27%), Positives = 246/499 (49%), Gaps = 42/499 (8%)

Query: 8   SRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTY 67
           S +  A +++  M   G  P VV+Y T++  +C+ G++  A ++  +M+  G LPN +TY
Sbjct: 169 SSIDVAREVYNVMVECGIRPTVVTYNTMLDSFCKQGKVQEALQLLLQMQKMGCLPNDVTY 228

Query: 68  SVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIA 127
           +VLV G+  + ++E+A  L+ ++         L V+   +  L+   C +G ++E  R+ 
Sbjct: 229 NVLVNGLSHSGELEQAKELIQEMLRL-----GLEVSAYTYDPLIRGYCEKGQLDEASRLG 283

Query: 128 EDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKH 187
           E+M    +V        ++  LC+ GR   A +++ VM  + L P LVSYN++++G  + 
Sbjct: 284 EEMLSRGAVPTLVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRL 343

Query: 188 GGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC 247
           G    A+ L  E    G +PS  TY  L++GLC   DL+ A ++       KD       
Sbjct: 344 GNIGEAFLLFAELRFRGLVPSVVTYNTLIDGLCRMGDLDVAMRL-------KDE------ 390

Query: 248 NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA 307
                                 M++    PDV T   ++ GFCK+G +  A ++ ++M+ 
Sbjct: 391 ----------------------MIKHGPDPDVFTFTILVRGFCKLGNLPMAKELFDEML- 427

Query: 308 GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRV 367
            +   PD   + T I G L +G   +A   + + M  RG+ P ++TYN  + GL +L  +
Sbjct: 428 NRGLQPDRFAYITRIVGELKLGDPSKAFG-MQEEMLARGFPPDLITYNVFIDGLHKLGNL 486

Query: 368 EEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAM 427
           +EA E+   ML  G+V D  TY  +I     +  L +A+  + +++          Y  +
Sbjct: 487 KEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARAVFLEMLSKGIFPSVVTYTVL 546

Query: 428 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
           I      G++  A+   +E+ + GV PN++ YN +I+G CK+    +AY+   EM+  G+
Sbjct: 547 IHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALINGLCKVRKMDQAYKFFTEMQAKGI 606

Query: 488 NPDAVTWRILDKLHGNRGN 506
           +P+  T+ IL   + N G+
Sbjct: 607 SPNKYTYTILINENCNLGH 625



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 112/362 (30%), Positives = 178/362 (49%), Gaps = 9/362 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M  LC   RV +A KL   M ++  +P++VSY TLI+GY R G +  A+ +F E+R  G+
Sbjct: 302 MYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRFRGL 361

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P+ +TY+ L+ G+ R  D++   V M    E +K   D  V    F  LV   C+ G +
Sbjct: 362 VPSVVTYNTLIDGLCRMGDLD---VAMRLKDEMIKHGPDPDV--FTFTILVRGFCKLGNL 416

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                + ++M       + FA    I    + G    A  +   M  RG  P L++YN  
Sbjct: 417 PMAKELFDEMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGFPPDLITYNVF 476

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GL K G    A +L+++ +  G +P   TY  ++        L KAR V   MLSK  
Sbjct: 477 IDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARAVFLEMLSKGI 536

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVF-MLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                   + + +   ++   +L  +  F M +    P+VIT N +ING CK+ ++++A 
Sbjct: 537 FPSVVTYTVLIHSYA-VRGRLKLAILHFFEMHEKGVHPNVITYNALINGLCKVRKMDQAY 595

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           K   +M A K  +P+  T+T +I    N+G  QEAL  LY+ M  R   P   T++A+L+
Sbjct: 596 KFFTEMQA-KGISPNKYTYTILINENCNLGHWQEALR-LYKDMLDREIQPDSCTHSALLK 653

Query: 360 GL 361
            L
Sbjct: 654 HL 655



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 95/302 (31%), Positives = 151/302 (50%), Gaps = 10/302 (3%)

Query: 202 QFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPT 261
           Q G+  SE TY V+++ L     +  A  V++ ++S K  +      I    L +    +
Sbjct: 74  QTGFKRSELTYAVILDILARNGLMRSAYCVMEKVVSVKMENGVVDVLILDLLLWIYAKKS 133

Query: 262 ELLN-VLVF--MLQTQCQPDVITLNTVINGF-CKMGRIEEALKVLNDMVAGKFCA--PDA 315
            L   +LVF  M+     PD+   N V+     +   I+ A +V N MV    C   P  
Sbjct: 134 MLEKCLLVFYKMVSKGMLPDLKNCNRVLRLLRDRDSSIDVAREVYNVMVE---CGIRPTV 190

Query: 316 VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN 375
           VT+ T++      G++QEAL LL Q M + G  P  VTYN ++ GL     +E+AKE+  
Sbjct: 191 VTYNTMLDSFCKQGKVQEALQLLLQ-MQKMGCLPNDVTYNVLVNGLSHSGELEQAKELIQ 249

Query: 376 CMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG 435
            ML +G+   + TY  +I G CE  QLDEA R  ++++    +     Y  ++ GLC+ G
Sbjct: 250 EMLRLGLEVSAYTYDPLIRGYCEKGQLDEASRLGEEMLSRGAVPTLVTYNTIMYGLCKWG 309

Query: 436 KIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWR 495
           ++ +A   L  +V+  + P++V YN +I G  +L    EA+ +  E+R  GL P  VT+ 
Sbjct: 310 RVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRFRGLVPSVVTYN 369

Query: 496 IL 497
            L
Sbjct: 370 TL 371



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 83/319 (26%), Positives = 137/319 (42%), Gaps = 38/319 (11%)

Query: 7   LSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLT 66
           L  +GEA  LF +++ RG VP+VV+Y TLI G CR G++DVA ++ DEM   G  P+  T
Sbjct: 343 LGNIGEAFLLFAELRFRGLVPSVVTYNTLIDGLCRMGDLDVAMRLKDEMIKHGPDPDVFT 402

Query: 67  YSVLVRGVLRTRDVERANVLM------------FKLWERMKEEEDLSVNNAAFAN----- 109
           +++LVRG  +  ++  A  L             F    R+  E  L   + AF       
Sbjct: 403 FTILVRGFCKLGNLPMAKELFDEMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEML 462

Query: 110 -------------LVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNH 156
                         +D L + G + E   + + M     V +      +I +   +G   
Sbjct: 463 ARGFPPDLITYNVFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLR 522

Query: 157 GASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG----GCMRAYQLLEEGIQFGYLPSEHTY 212
            A  V   M  +G+ PS+V+Y  ++H     G      +  +++ E+G+     P+  TY
Sbjct: 523 KARAVFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVH----PNVITY 578

Query: 213 KVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQ 272
             L+ GLC    +++A K    M +K          I +   C + +  E L +   ML 
Sbjct: 579 NALINGLCKVRKMDQAYKFFTEMQAKGISPNKYTYTILINENCNLGHWQEALRLYKDMLD 638

Query: 273 TQCQPDVITLNTVINGFCK 291
            + QPD  T + ++    K
Sbjct: 639 REIQPDSCTHSALLKHLNK 657


>gi|115440343|ref|NP_001044451.1| Os01g0783100 [Oryza sativa Japonica Group]
 gi|20804869|dbj|BAB92551.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113533982|dbj|BAF06365.1| Os01g0783100 [Oryza sativa Japonica Group]
          Length = 684

 Score =  216 bits (550), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 137/491 (27%), Positives = 239/491 (48%), Gaps = 13/491 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R  +A ++    +  G   +V +Y TL+ GYCR G++D A ++   M    V P+
Sbjct: 88  LCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDAARRLIASM---PVAPD 144

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           + TY+ ++RG+     V  A  L+  +  R  +   ++     +  L++++C+     + 
Sbjct: 145 AYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVT-----YTVLLEAVCKSTGFGQA 199

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             + ++M              +I+ +CR GR   A   +  +   G  P  VSY +++ G
Sbjct: 200 MEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKG 259

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LC         +L  E ++   +P+E T+ +LV   C    +E+A +VL+ M        
Sbjct: 260 LCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAAN 319

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
           T +CNI +  +C      +    L  M    C PD I+  TV+ G C+  R E+A ++L 
Sbjct: 320 TTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLK 379

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           +MV  K C P+ VTF T I  L   G I++A  L+ Q M + G    IVTYNA++ G   
Sbjct: 380 EMVR-KNCPPNEVTFNTFICILCQKGLIEQATMLIEQ-MSEHGCEVNIVTYNALVNGFCV 437

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
             RV+ A E+F  M       ++ TY  ++ GLC + +LD A     +++      +   
Sbjct: 438 QGRVDSALELFYSM---PCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVT 494

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           +  ++   C+ G + EA+  + ++++ G TPN++ YN ++DG  K     EA ++L  + 
Sbjct: 495 FNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLV 554

Query: 484 KNGLNPDAVTW 494
            NG++PD VT+
Sbjct: 555 SNGVSPDIVTY 565



 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 141/508 (27%), Positives = 243/508 (47%), Gaps = 18/508 (3%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   RVGEA  L  DM  RG  P+VV+YT L+   C++     A +V DEMR  G  PN
Sbjct: 155 LCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPN 214

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY+V++ G+ R   V+ A   + +L     + + +S     +  ++  LC      +V
Sbjct: 215 IVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVS-----YTTVLKGLCAAKRWEDV 269

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             +  +M +   +  E     ++   CR G    A +V+  M   G   +    N +++ 
Sbjct: 270 EELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINT 329

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           +CK G    A+Q L     +G  P   +Y  +++GLC     E A+++L+ M+ K     
Sbjct: 330 ICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPN 389

Query: 244 TRICNIYLRALC---LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
               N ++  LC   LI+  T L+     M +  C+ +++T N ++NGFC  GR++ AL+
Sbjct: 390 EVTFNTFICILCQKGLIEQATMLIEQ---MSEHGCEVNIVTYNALVNGFCVQGRVDSALE 446

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +   M     C P+ +T+TT++ GL N  R+  A  LL +++ Q+  +P +VT+N ++  
Sbjct: 447 LFYSMP----CKPNTITYTTLLTGLCNAERLDAAAELLAEML-QKDCAPNVVTFNVLVSF 501

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
             +   ++EA E+   M+  G   +  TY  ++DG+ +    +EA      +V      D
Sbjct: 502 FCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPD 561

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              Y+++I  L R  ++ EA+   + + D G+ P  V YN ++   CK      A     
Sbjct: 562 IVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFA 621

Query: 481 EMRKNGLNPDAVTWRILDKLHGNRGNDF 508
            M  NG  P+ +T+  L  + G    DF
Sbjct: 622 YMVSNGCMPNELTYITL--IEGLANEDF 647



 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 128/497 (25%), Positives = 244/497 (49%), Gaps = 12/497 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ +C  +  G+A ++  +M+++G  PN+V+Y  +I+G CR G +D A +  + +   G 
Sbjct: 187 LEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGF 246

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P++++Y+ +++G+   +  E    L  ++ E+     +   N   F  LV   CR G V
Sbjct: 247 QPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEK-----NCMPNEVTFDMLVRFFCRGGMV 301

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
               ++ E M           C  +I+++C+ GR   A + +  M   G +P  +SY ++
Sbjct: 302 ERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTV 361

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GLC+      A +LL+E ++    P+E T+   +  LC +  +E+A  +++ M     
Sbjct: 362 LKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGC 421

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                  N  +   C+       L +   M    C+P+ IT  T++ G C   R++ A +
Sbjct: 422 EVNIVTYNALVNGFCVQGRVDSALELFYSM---PCKPNTITYTTLLTGLCNAERLDAAAE 478

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +L +M+  K CAP+ VTF  ++      G + EA+ L+ Q+M + G +P ++TYN +L G
Sbjct: 479 LLAEMLQ-KDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMM-EHGCTPNLITYNTLLDG 536

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           + +    EEA E+ + ++  GV  D  TY+ +I  L   ++++EA + +  +        
Sbjct: 537 ITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPK 596

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
             +Y  ++  LC+      A+ F   +V +G  PN + Y  +I+G       +E   +LR
Sbjct: 597 AVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEGLANEDFLKETRDLLR 656

Query: 481 EMRKNG-LNPDAV-TWR 495
           E+   G LN + +  WR
Sbjct: 657 ELCSRGVLNKNLLEEWR 673



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 84/342 (24%), Positives = 152/342 (44%), Gaps = 40/342 (11%)

Query: 158 ASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVE 217
           A+R+V     RG  P +     ++  LC+ G    A ++L    + G       Y  LV 
Sbjct: 62  AARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVA 121

Query: 218 GLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQP 277
           G C    L+ AR+++  M                                         P
Sbjct: 122 GYCRYGQLDAARRLIASM--------------------------------------PVAP 143

Query: 278 DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNL 337
           D  T   +I G C  GR+ EAL +L+DM+  + C P  VT+T ++  +       +A+ +
Sbjct: 144 DAYTYTPIIRGLCDRGRVGEALSLLDDML-HRGCQPSVVTYTVLLEAVCKSTGFGQAMEV 202

Query: 338 LYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLC 397
           L + M  +G +P IVTYN ++ G+ R  RV++A+E  N +   G   D+ +Y  V+ GLC
Sbjct: 203 LDE-MRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLC 261

Query: 398 ESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIV 457
            + + ++ +  + +++  + + +   +  +++  CR G +  A+  L ++   G   N  
Sbjct: 262 AAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTT 321

Query: 458 CYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
             N+VI+  CK     +A+Q L  M   G +PD +++  + K
Sbjct: 322 LCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLK 363


>gi|449527556|ref|XP_004170776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Cucumis sativus]
          Length = 665

 Score =  216 bits (550), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 132/492 (26%), Positives = 252/492 (51%), Gaps = 10/492 (2%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           E  K   DM  RG +P++++ T+LI G C+TG+   A +V + +   G +P+ +TY+VL+
Sbjct: 128 EGFKFLEDMVCRGDIPDIIACTSLIRGLCKTGKTWKATRVMEILEDSGAVPDVITYNVLI 187

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP 131
            G  +T ++  A     +L +RM    D+   N     ++ +LC  G + E   + +   
Sbjct: 188 SGYCKTGEIGSA----LQLLDRMSVSPDVVTYNT----ILRTLCDSGKLKEAMEVLDRQM 239

Query: 132 QGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCM 191
           Q +   +      +I++ C+      A +++  MR +G  P +V+YN +++G+CK G   
Sbjct: 240 QRECYPDVITYTILIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGICKEGRLD 299

Query: 192 RAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYL 251
            A + L     +G  P+  T+ +++  +C       A K L  M+ K         NI +
Sbjct: 300 EAIRFLNHMPSYGCQPNVITHNIILRSMCSTGRWMDAEKFLAEMIRKGCSPSVVTFNILI 359

Query: 252 RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC 311
             LC        ++VL  M Q  C P+ ++ N +++  CK  ++E A++ L+ MV+ + C
Sbjct: 360 NFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHALCKDKKMERAIEYLDIMVS-RGC 418

Query: 312 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK 371
            PD VT+ T++  L   G++  A+ +L Q +  +G SP ++TYN V+ GL ++ + ++A 
Sbjct: 419 YPDIVTYNTLLTALCKDGKVDVAVEILNQ-LGSKGCSPVLITYNTVIDGLSKVGKTDDAI 477

Query: 372 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 431
           ++ + M G G+  D  TY+ ++ GL    ++DEA  F+ D+       +   Y +++ GL
Sbjct: 478 KLLDEMKGKGLKPDIITYSTLVGGLSREGKVDEAIAFFHDLEEMGVKPNAITYNSIMLGL 537

Query: 432 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 491
           C++ +   A+ FL  +V  G  P    Y ++I+G     + +EA ++L E+   G+   +
Sbjct: 538 CKARQTVRAIDFLAYMVARGCKPTETSYMILIEGLAYEGLAKEALELLNELCSRGVVKKS 597

Query: 492 VTWRILDKLHGN 503
              +++ K+  N
Sbjct: 598 SAEQVVVKIPFN 609



 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 119/389 (30%), Positives = 198/389 (50%), Gaps = 5/389 (1%)

Query: 109 NLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKR 168
           N +  L R G + E F+  EDM     + +  AC  +I  LC++G+   A+RV+ ++   
Sbjct: 115 NHLRRLVRNGELEEGFKFLEDMVCRGDIPDIIACTSLIRGLCKTGKTWKATRVMEILEDS 174

Query: 169 GLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKA 228
           G  P +++YN ++ G CK G    A QLL+   +    P   TY  ++  LC    L++A
Sbjct: 175 GAVPDVITYNVLISGYCKTGEIGSALQLLD---RMSVSPDVVTYNTILRTLCDSGKLKEA 231

Query: 229 RKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVING 288
            +VL   + ++         I + A C      + + +L  M    C+PDV+T N +ING
Sbjct: 232 MEVLDRQMQRECYPDVITYTILIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNVLING 291

Query: 289 FCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYS 348
            CK GR++EA++ LN M     C P+ +T   I+  + + GR  +A   L + M ++G S
Sbjct: 292 ICKEGRLDEAIRFLNHM-PSYGCQPNVITHNIILRSMCSTGRWMDAEKFLAE-MIRKGCS 349

Query: 349 PGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRF 408
           P +VT+N ++  L R   +  A +V   M   G   +S +Y  ++  LC+  +++ A  +
Sbjct: 350 PSVVTFNILINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHALCKDKKMERAIEY 409

Query: 409 WDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACK 468
            D +V      D   Y  ++  LC+ GK+  AV  L +L   G +P ++ YN VIDG  K
Sbjct: 410 LDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLGSKGCSPVLITYNTVIDGLSK 469

Query: 469 LSMKREAYQILREMRKNGLNPDAVTWRIL 497
           +    +A ++L EM+  GL PD +T+  L
Sbjct: 470 VGKTDDAIKLLDEMKGKGLKPDIITYSTL 498



 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 131/460 (28%), Positives = 234/460 (50%), Gaps = 10/460 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   +  +A ++   ++  G VP+V++Y  LI GYC+TGE+  A ++ D M    V P+
Sbjct: 155 LCKTGKTWKATRVMEILEDSGAVPDVITYNVLISGYCKTGEIGSALQLLDRM---SVSPD 211

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY+ ++R +  +  ++ A  ++ +  +R     +   +   +  L+++ C+E  V + 
Sbjct: 212 VVTYNTILRTLCDSGKLKEAMEVLDRQMQR-----ECYPDVITYTILIEATCKESGVGQA 266

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            ++ ++M       +      +I+ +C+ GR   A R +  M   G  P+++++N I+  
Sbjct: 267 MKLLDEMRDKGCKPDVVTYNVLINGICKEGRLDEAIRFLNHMPSYGCQPNVITHNIILRS 326

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           +C  G  M A + L E I+ G  PS  T+ +L+  LC +  + +A  VL+ M        
Sbjct: 327 MCSTGRWMDAEKFLAEMIRKGCSPSVVTFNILINFLCRKGLIGRAIDVLEKMPQHGCTPN 386

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
           +   N  L ALC  K     +  L  M+   C PD++T NT++   CK G+++ A+++LN
Sbjct: 387 SLSYNPLLHALCKDKKMERAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILN 446

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            +   K C+P  +T+ T+I GL  VG+  +A+ LL + M  +G  P I+TY+ ++ GL R
Sbjct: 447 QL-GSKGCSPVLITYNTVIDGLSKVGKTDDAIKLLDE-MKGKGLKPDIITYSTLVGGLSR 504

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
             +V+EA   F+ +  +GV  ++ TY  ++ GLC++ Q   A  F   +V          
Sbjct: 505 EGKVDEAIAFFHDLEEMGVKPNAITYNSIMLGLCKARQTVRAIDFLAYMVARGCKPTETS 564

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463
           Y  +I+GL   G   EA+  L EL   GV        VV+
Sbjct: 565 YMILIEGLAYEGLAKEALELLNELCSRGVVKKSSAEQVVV 604



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 100/393 (25%), Positives = 180/393 (45%), Gaps = 42/393 (10%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C  S VG+A KL  +M+ +G  P+VV+Y  LI+G C+ G +D A +  + M   G 
Sbjct: 254 IEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGICKEGRLDEAIRFLNHMPSYGC 313

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +T+++++R +  T     A   + ++  +       S +   F  L++ LCR+G +
Sbjct: 314 QPNVITHNIILRSMCSTGRWMDAEKFLAEMIRK-----GCSPSVVTFNILINFLCRKGLI 368

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                + E MPQ        +   ++ +LC+  +   A   + +M  RG  P +V+YN++
Sbjct: 369 GRAIDVLEKMPQHGCTPNSLSYNPLLHALCKDKKMERAIEYLDIMVSRGCYPDIVTYNTL 428

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +  LCK G    A ++L +    G  P   TY  +++GL      + A K+L  M  K  
Sbjct: 429 LTALCKDGKVDVAVEILNQLGSKGCSPVLITYNTVIDGLSKVGKTDDAIKLLDEMKGK-- 486

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                              +PD+IT +T++ G  + G+++EA+ 
Sbjct: 487 ---------------------------------GLKPDIITYSTLVGGLSREGKVDEAIA 513

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
             +D+       P+A+T+ +I+ GL    +   A++ L   M  RG  P   +Y  ++ G
Sbjct: 514 FFHDLEEMGV-KPNAITYNSIMLGLCKARQTVRAIDFL-AYMVARGCKPTETSYMILIEG 571

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVI 393
           L      +EA E+ N +   GVV  S+   +V+
Sbjct: 572 LAYEGLAKEALELLNELCSRGVVKKSSAEQVVV 604


>gi|242096872|ref|XP_002438926.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
 gi|241917149|gb|EER90293.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
          Length = 924

 Score =  216 bits (550), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 134/497 (26%), Positives = 239/497 (48%), Gaps = 7/497 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C +  +  A K+  +M+  G   NVV+Y TLI G CR G ++ A+    EM   G+
Sbjct: 250 IEAYCKVRDLESAKKVVEEMRETGCSLNVVTYNTLIGGLCRAGAIEEAFGYKKEMEDYGL 309

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P+  TY  ++ G+ +    ++A  L+ ++         L  N   ++ L+D   R+G  
Sbjct: 310 VPDGFTYGAIINGLCKRGRPDQAKCLLDEM-----SCAGLMPNVVVYSTLIDGFMRQGNA 364

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E F+I ++M        +    ++I  LC+ GR   ASR++  M K G     ++YN +
Sbjct: 365 DEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRILKQMTKIGYMADTMTYNLV 424

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G  +      A+ LL E  + G  P+ +TY +++ GLC   + E+A  +L+ M++   
Sbjct: 425 IEGHLRQHNKEEAFLLLNEMRKGGISPNVYTYSIIINGLCQIGESERASGLLEQMIADGL 484

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                +    +   C   + +     L  M +    PD+   N++I G   +G+++EA++
Sbjct: 485 KPNAFVYAPLISGYCREGSFSLACETLKKMTRENLTPDLYCYNSLIIGLSNVGKMDEAIE 544

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
             ++M+   F  P+  T+  +I G    G +++A  LL+Q++   G +P    Y  +L G
Sbjct: 545 YYDEMLEKGF-QPNDFTYGGLIHGYSMAGNLEKAEQLLHQML-NSGLNPNDFIYAQILEG 602

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
            F+   +E+       ML  G++ D+  Y IVI  L  S  +  A      I     + D
Sbjct: 603 YFKSDNLEKVSSTLKSMLEKGLMPDNRLYGIVIHNLSSSGHMQAAVSVLSVIEKNGLVPD 662

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
           + +Y ++I G C++  + +AV  L E+   G+ P I CYN +IDG CK      A  I  
Sbjct: 663 SLIYGSLISGFCKAADMEKAVGLLDEMAKKGIEPGISCYNALIDGFCKSDDISHARNIFN 722

Query: 481 EMRKNGLNPDAVTWRIL 497
            +   GL P+ VT+  L
Sbjct: 723 SIICKGLPPNCVTYTTL 739



 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 139/527 (26%), Positives = 242/527 (45%), Gaps = 41/527 (7%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   R  +A  L  +M   G +PNVV Y+TLI G+ R G  D A+K+  EM   GV
Sbjct: 320 INGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYSTLIDGFMRQGNADEAFKIVKEMSAAGV 379

Query: 61  LPNSLTYSVLVRGVLRTRDVERAN--------------------VLMFKLWERMKEEE-- 98
            PN +TY  L+RG+ +   + RA+                    V+   L +  KEE   
Sbjct: 380 QPNKITYDNLIRGLCKLGRMGRASRILKQMTKIGYMADTMTYNLVIEGHLRQHNKEEAFL 439

Query: 99  --------DLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC 150
                    +S N   ++ +++ LC+ G       + E M         F    +I   C
Sbjct: 440 LLNEMRKGGISPNVYTYSIIINGLCQIGESERASGLLEQMIADGLKPNAFVYAPLISGYC 499

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
           R G    A   +  M +  LTP L  YNS++ GL   G    A +  +E ++ G+ P++ 
Sbjct: 500 REGSFSLACETLKKMTRENLTPDLYCYNSLIIGLSNVGKMDEAIEYYDEMLEKGFQPNDF 559

Query: 211 TYKVLVEGLCGESDLEKARKVLQFMLSK----KDVDRTRICNIYLRALCLIKNPTELLNV 266
           TY  L+ G     +LEKA ++L  ML+      D    +I   Y ++     N  ++ + 
Sbjct: 560 TYGGLIHGYSMAGNLEKAEQLLHQMLNSGLNPNDFIYAQILEGYFKS----DNLEKVSST 615

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
           L  ML+    PD      VI+     G ++ A+ VL+ ++      PD++ + ++I G  
Sbjct: 616 LKSMLEKGLMPDNRLYGIVIHNLSSSGHMQAAVSVLS-VIEKNGLVPDSLIYGSLISGFC 674

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
               +++A+ LL + M ++G  PGI  YNA++ G  +   +  A+ +FN ++  G+  + 
Sbjct: 675 KAADMEKAVGLLDE-MAKKGIEPGISCYNALIDGFCKSDDISHARNIFNSIICKGLPPNC 733

Query: 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE 446
            TY  +IDG C++  + +A   +++++      D +VY+ +  G   SG + +A+    E
Sbjct: 734 VTYTTLIDGYCKAGDIRDAIDLYNEMLTEGVAPDAFVYSVLAAGCSNSGDLQQALFITEE 793

Query: 447 LVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVT 493
           ++  G    I  +N ++ G CK    +E  + L  M    + P  +T
Sbjct: 794 MIARGYA-IISSFNTLVHGFCKRGKLQETVKFLHVMMDKDIVPSLLT 839



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 122/485 (25%), Positives = 231/485 (47%), Gaps = 16/485 (3%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC L R+G A ++   M   G++ + ++Y  +I G+ R    + A+ + +EMR  G+ PN
Sbjct: 393 LCKLGRMGRASRILKQMTKIGYMADTMTYNLVIEGHLRQHNKEEAFLLLNEMRKGGISPN 452

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             TYS+++ G+ +  + ERA+ L+ ++       + L  N   +A L+   CREG  +  
Sbjct: 453 VYTYSIIINGLCQIGESERASGLLEQMIA-----DGLKPNAFVYAPLISGYCREGSFSLA 507

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
               + M +     + +    +I  L   G+   A      M ++G  P+  +Y  ++HG
Sbjct: 508 CETLKKMTRENLTPDLYCYNSLIIGLSNVGKMDEAIEYYDEMLEKGFQPNDFTYGGLIHG 567

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
               G   +A QLL + +  G  P++  Y  ++EG     +LEK    L+ ML K  +  
Sbjct: 568 YSMAGNLEKAEQLLHQMLNSGLNPNDFIYAQILEGYFKSDNLEKVSSTLKSMLEKGLMPD 627

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
            R+  I +  L    +    ++VL  + +    PD +   ++I+GFCK   +E+A+ +L+
Sbjct: 628 NRLYGIVIHNLSSSGHMQAAVSVLSVIEKNGLVPDSLIYGSLISGFCKAADMEKAVGLLD 687

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           +M A K   P    +  +I G      I  A N+   ++  +G  P  VTY  ++ G  +
Sbjct: 688 EM-AKKGIEPGISCYNALIDGFCKSDDISHARNIFNSII-CKGLPPNCVTYTTLIDGYCK 745

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
              + +A +++N ML  GV  D+  Y+++  G   S  L +A    +++     I   Y 
Sbjct: 746 AGDIRDAIDLYNEMLTEGVAPDAFVYSVLAAGCSNSGDLQQALFITEEM-----IARGYA 800

Query: 424 ----YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
               +  ++ G C+ GK+ E V FL+ ++D  + P+++    ++ G  +     EA+ I 
Sbjct: 801 IISSFNTLVHGFCKRGKLQETVKFLHVMMDKDIVPSLLTVENIVIGLGEAGKLSEAHTIF 860

Query: 480 REMRK 484
            E+++
Sbjct: 861 VELQQ 865



 Score =  154 bits (389), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 100/358 (27%), Positives = 171/358 (47%), Gaps = 39/358 (10%)

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
           +I++ C+      A +VV  MR+ G + ++V+YN+++ GLC+ G    A+   +E   +G
Sbjct: 249 LIEAYCKVRDLESAKKVVEEMRETGCSLNVVTYNTLIGGLCRAGAIEEAFGYKKEMEDYG 308

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL 264
            +P   TY  ++ GLC     ++A+                         CL+       
Sbjct: 309 LVPDGFTYGAIINGLCKRGRPDQAK-------------------------CLLDE----- 338

Query: 265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 324
                M      P+V+  +T+I+GF + G  +EA K++ +M A     P+ +T+  +I G
Sbjct: 339 -----MSCAGLMPNVVVYSTLIDGFMRQGNADEAFKIVKEMSAAGV-QPNKITYDNLIRG 392

Query: 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 384
           L  +GR+  A  +L Q M + GY    +TYN V+ G  R    EEA  + N M   G+  
Sbjct: 393 LCKLGRMGRASRILKQ-MTKIGYMADTMTYNLVIEGHLRQHNKEEAFLLLNEMRKGGISP 451

Query: 385 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFL 444
           +  TY+I+I+GLC+  + + A    + ++      + +VYA +I G CR G    A   L
Sbjct: 452 NVYTYSIIINGLCQIGESERASGLLEQMIADGLKPNAFVYAPLISGYCREGSFSLACETL 511

Query: 445 YELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
            ++    +TP++ CYN +I G   +    EA +   EM + G  P+  T+  L  +HG
Sbjct: 512 KKMTRENLTPDLYCYNSLIIGLSNVGKMDEAIEYYDEMLEKGFQPNDFTYGGL--IHG 567



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/194 (32%), Positives = 103/194 (53%), Gaps = 1/194 (0%)

Query: 308 GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRV 367
           G   +PD  T++T+I     V  ++ A  ++ + M + G S  +VTYN ++ GL R   +
Sbjct: 236 GAGISPDVYTYSTLIEAYCKVRDLESAKKVVEE-MRETGCSLNVVTYNTLIGGLCRAGAI 294

Query: 368 EEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAM 427
           EEA      M   G+V D  TY  +I+GLC+  + D+AK   D++     + +  VY+ +
Sbjct: 295 EEAFGYKKEMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYSTL 354

Query: 428 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
           I G  R G   EA   + E+  +GV PN + Y+ +I G CKL     A +IL++M K G 
Sbjct: 355 IDGFMRQGNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRILKQMTKIGY 414

Query: 488 NPDAVTWRILDKLH 501
             D +T+ ++ + H
Sbjct: 415 MADTMTYNLVIEGH 428



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 86/199 (43%), Gaps = 41/199 (20%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C    +  A  +F  +  +G  PN V+YTTLI GYC+ G++  A  +++EM   GV
Sbjct: 705 IDGFCKSDDISHARNIFNSIICKGLPPNCVTYTTLIDGYCKAGDIRDAIDLYNEMLTEGV 764

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P++  YSVL  G   + D+++A                                     
Sbjct: 765 APDAFVYSVLAAGCSNSGDLQQA------------------------------------- 787

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
             +F   E + +G ++   F    ++   C+ G+     + ++VM  + + PSL++  +I
Sbjct: 788 --LFITEEMIARGYAIISSF--NTLVHGFCKRGKLQETVKFLHVMMDKDIVPSLLTVENI 843

Query: 181 VHGLCKHGGCMRAYQLLEE 199
           V GL + G    A+ +  E
Sbjct: 844 VIGLGEAGKLSEAHTIFVE 862


>gi|125572252|gb|EAZ13767.1| hypothetical protein OsJ_03693 [Oryza sativa Japonica Group]
          Length = 715

 Score =  216 bits (550), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 137/491 (27%), Positives = 239/491 (48%), Gaps = 13/491 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R  +A ++    +  G   +V +Y TL+ GYCR G++D A ++   M    V P+
Sbjct: 119 LCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDAARRLIASM---PVAPD 175

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           + TY+ ++RG+     V  A  L+  +  R  +   ++     +  L++++C+     + 
Sbjct: 176 AYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVT-----YTVLLEAVCKSTGFGQA 230

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             + ++M              +I+ +CR GR   A   +  +   G  P  VSY +++ G
Sbjct: 231 MEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKG 290

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LC         +L  E ++   +P+E T+ +LV   C    +E+A +VL+ M        
Sbjct: 291 LCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAAN 350

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
           T +CNI +  +C      +    L  M    C PD I+  TV+ G C+  R E+A ++L 
Sbjct: 351 TTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLK 410

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           +MV  K C P+ VTF T I  L   G I++A  L+ Q M + G    IVTYNA++ G   
Sbjct: 411 EMVR-KNCPPNEVTFNTFICILCQKGLIEQATMLIEQ-MSEHGCEVNIVTYNALVNGFCV 468

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
             RV+ A E+F  M       ++ TY  ++ GLC + +LD A     +++      +   
Sbjct: 469 QGRVDSALELFYSM---PCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVT 525

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           +  ++   C+ G + EA+  + ++++ G TPN++ YN ++DG  K     EA ++L  + 
Sbjct: 526 FNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLV 585

Query: 484 KNGLNPDAVTW 494
            NG++PD VT+
Sbjct: 586 SNGVSPDIVTY 596



 Score =  206 bits (523), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 141/508 (27%), Positives = 243/508 (47%), Gaps = 18/508 (3%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   RVGEA  L  DM  RG  P+VV+YT L+   C++     A +V DEMR  G  PN
Sbjct: 186 LCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPN 245

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY+V++ G+ R   V+ A   + +L     + + +S     +  ++  LC      +V
Sbjct: 246 IVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVS-----YTTVLKGLCAAKRWEDV 300

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             +  +M +   +  E     ++   CR G    A +V+  M   G   +    N +++ 
Sbjct: 301 EELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINT 360

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           +CK G    A+Q L     +G  P   +Y  +++GLC     E A+++L+ M+ K     
Sbjct: 361 ICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPN 420

Query: 244 TRICNIYLRALC---LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
               N ++  LC   LI+  T L+     M +  C+ +++T N ++NGFC  GR++ AL+
Sbjct: 421 EVTFNTFICILCQKGLIEQATMLIEQ---MSEHGCEVNIVTYNALVNGFCVQGRVDSALE 477

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +   M     C P+ +T+TT++ GL N  R+  A  LL +++ Q+  +P +VT+N ++  
Sbjct: 478 LFYSMP----CKPNTITYTTLLTGLCNAERLDAAAELLAEML-QKDCAPNVVTFNVLVSF 532

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
             +   ++EA E+   M+  G   +  TY  ++DG+ +    +EA      +V      D
Sbjct: 533 FCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPD 592

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              Y+++I  L R  ++ EA+   + + D G+ P  V YN ++   CK      A     
Sbjct: 593 IVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFA 652

Query: 481 EMRKNGLNPDAVTWRILDKLHGNRGNDF 508
            M  NG  P+ +T+  L  + G    DF
Sbjct: 653 YMVSNGCMPNELTYITL--IEGLANEDF 678



 Score =  199 bits (505), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 128/497 (25%), Positives = 244/497 (49%), Gaps = 12/497 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ +C  +  G+A ++  +M+++G  PN+V+Y  +I+G CR G +D A +  + +   G 
Sbjct: 218 LEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGF 277

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P++++Y+ +++G+   +  E    L  ++ E+     +   N   F  LV   CR G V
Sbjct: 278 QPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEK-----NCMPNEVTFDMLVRFFCRGGMV 332

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
               ++ E M           C  +I+++C+ GR   A + +  M   G +P  +SY ++
Sbjct: 333 ERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTV 392

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GLC+      A +LL+E ++    P+E T+   +  LC +  +E+A  +++ M     
Sbjct: 393 LKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGC 452

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                  N  +   C+       L +   M    C+P+ IT  T++ G C   R++ A +
Sbjct: 453 EVNIVTYNALVNGFCVQGRVDSALELFYSM---PCKPNTITYTTLLTGLCNAERLDAAAE 509

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +L +M+  K CAP+ VTF  ++      G + EA+ L+ Q+M + G +P ++TYN +L G
Sbjct: 510 LLAEMLQ-KDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMM-EHGCTPNLITYNTLLDG 567

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           + +    EEA E+ + ++  GV  D  TY+ +I  L   ++++EA + +  +        
Sbjct: 568 ITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPK 627

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
             +Y  ++  LC+      A+ F   +V +G  PN + Y  +I+G       +E   +LR
Sbjct: 628 AVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEGLANEDFLKETRDLLR 687

Query: 481 EMRKNG-LNPDAV-TWR 495
           E+   G LN + +  WR
Sbjct: 688 ELCSRGVLNKNLLEEWR 704



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 91/338 (26%), Positives = 162/338 (47%), Gaps = 7/338 (2%)

Query: 158 ASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVE 217
           A+R+V     RG  P +     ++  LC+ G    A ++L    + G       Y  LV 
Sbjct: 93  AARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVA 152

Query: 218 GLCGESDLEKARKVLQFMLSKKDV-DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQ 276
           G C    L+ AR+++  M    D    T I    +R LC      E L++L  ML   CQ
Sbjct: 153 GYCRYGQLDAARRLIASMPVAPDAYTYTPI----IRGLCDRGRVGEALSLLDDMLHRGCQ 208

Query: 277 PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALN 336
           P V+T   ++   CK     +A++VL++M A K C P+ VT+  II G+   GR+ +A  
Sbjct: 209 PSVVTYTVLLEAVCKSTGFGQAMEVLDEMRA-KGCTPNIVTYNVIINGMCREGRVDDARE 267

Query: 337 LLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 396
            L + +   G+ P  V+Y  VL+GL   +R E+ +E+F  M+    + +  T+ +++   
Sbjct: 268 FLNR-LSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFF 326

Query: 397 CESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNI 456
           C    ++ A +  + +       +  +   +I  +C+ G++ +A  FL  +   G +P+ 
Sbjct: 327 CRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDT 386

Query: 457 VCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
           + Y  V+ G C+     +A ++L+EM +    P+ VT+
Sbjct: 387 ISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTF 424


>gi|147771990|emb|CAN69053.1| hypothetical protein VITISV_022963 [Vitis vinifera]
          Length = 2021

 Score =  216 bits (549), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 136/493 (27%), Positives = 248/493 (50%), Gaps = 46/493 (9%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C L+RVG A  +   +   GH P+  ++TTLI G C  G++  A  +FD+M   G 
Sbjct: 107 INSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGF 166

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +TY  L+ G+ +  +   A  L+     R  E+ +   +   + +++DSLC++  V
Sbjct: 167 QPNVVTYGTLINGLCKVGNTSAAIRLL-----RSMEQGNCQPDVVIYTSIIDSLCKDRQV 221

Query: 121 NEVFRIAEDMPQGKSVNEE-FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
            E F +   M  G+ ++ + F    ++ +LC        + ++  M    + P +V +++
Sbjct: 222 TEAFNLFSQM-VGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFST 280

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           +V  LCK G    A+++++  IQ G  P   TY  L++G C +S++++A KV   M+ K 
Sbjct: 281 VVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKG 340

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                                                PDVI+  T+ING+CK+ +I++A+
Sbjct: 341 -----------------------------------FAPDVISYTTLINGYCKIHKIDKAM 365

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
            +  +M   ++  PD  T+ T+++GL +VGR+Q+A+ L ++ M  RG  P +VTY+ +L 
Sbjct: 366 YLFEEMCRKEWI-PDTKTYNTLMYGLCHVGRLQDAIALFHE-MVARGQMPDLVTYSILLD 423

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
            L + R +EEA  +   +    +  D   Y I+IDG+C + +L+ A+  + ++     +H
Sbjct: 424 SLCKNRHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLS-SKGLH 482

Query: 420 DN-YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI 478
            + + Y  MI GLC+ G ++EA     E+  +  +P+   YN +  G  + +    A Q+
Sbjct: 483 PSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGCTYNTIARGFLQNNETLRAIQL 542

Query: 479 LREMRKNGLNPDA 491
           L EM   G + D+
Sbjct: 543 LEEMLARGFSADS 555



 Score =  209 bits (532), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 134/474 (28%), Positives = 234/474 (49%), Gaps = 9/474 (1%)

Query: 27  PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVL 86
           P++V +  L+    +         +  +M   GV PN  T ++L+        V  A  +
Sbjct: 63  PSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINSFCHLNRVGFAFSV 122

Query: 87  MFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMI 146
           + K+  ++  + D +     F  L+  LC EG + E   + + M            G +I
Sbjct: 123 LAKI-LKLGHQPDPT----TFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLI 177

Query: 147 DSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL 206
           + LC+ G    A R++  M +    P +V Y SI+  LCK      A+ L  + +  G  
Sbjct: 178 NGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGIS 237

Query: 207 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 266
           P   TY  LV  LC   + +    +L  M++ K +    I +  + ALC     TE   +
Sbjct: 238 PDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEI 297

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
           +  M+Q   +PDV+T  T+++G C    ++EA+KV + MV   F APD +++TT+I G  
Sbjct: 298 VDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGF-APDVISYTTLINGYC 356

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
            + +I +A+  L++ M ++ + P   TYN ++ GL  + R+++A  +F+ M+  G + D 
Sbjct: 357 KIHKIDKAM-YLFEEMCRKEWIPDTKTYNTLMYGLCHVGRLQDAIALFHEMVARGQMPDL 415

Query: 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH-DNYVYAAMIKGLCRSGKIHEAVHFLY 445
            TY+I++D LC++  L+EA      I   SN++ D  VY  +I G+CR+G++  A     
Sbjct: 416 VTYSILLDSLCKNRHLEEAMALLKAIE-ASNLNPDIQVYNIIIDGMCRAGELEAARDLFS 474

Query: 446 ELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
            L   G+ P++  YN++I G CK  +  EA ++  EM  N  +PD  T+  + +
Sbjct: 475 NLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGCTYNTIAR 528



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/322 (27%), Positives = 144/322 (44%), Gaps = 40/322 (12%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   +V EAH++   M  RG  P+VV+YTTL+ G+C   EMD A KVFD M   G 
Sbjct: 282 VDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGF 341

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ ++Y+ L+ G  +   +++A   M+                     L + +CR+ ++
Sbjct: 342 APDVISYTTLINGYCKIHKIDKA---MY---------------------LFEEMCRKEWI 377

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                     P  K+ N       ++  LC  GR   A  + + M  RG  P LV+Y+ +
Sbjct: 378 ----------PDTKTYNT------LMYGLCHVGRLQDAIALFHEMVARGQMPDLVTYSIL 421

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +  LCK+     A  LL+        P    Y ++++G+C   +LE AR +   + SK  
Sbjct: 422 LDSLCKNRHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGL 481

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                  NI +  LC      E   + + M    C PD  T NT+  GF +      A++
Sbjct: 482 HPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGCTYNTIARGFLQNNETLRAIQ 541

Query: 301 VLNDMVAGKFCAPDAVTFTTII 322
           +L +M+A  F A       +++
Sbjct: 542 LLEEMLARGFSADSCFLMLSVL 563


>gi|225451354|ref|XP_002275019.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 744

 Score =  216 bits (549), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 139/509 (27%), Positives = 253/509 (49%), Gaps = 46/509 (9%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C L+RVG A  +   +   GH P+  ++TTLI G C  G++  A  +FD+M   G 
Sbjct: 98  INSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGF 157

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +TY  L+ G+ +  +   A  L+     R  E+ +   +   + +++DSLC++  V
Sbjct: 158 QPNVVTYGTLINGLCKVGNTSAAIRLL-----RSMEQGNCQPDVVIYTSIIDSLCKDRQV 212

Query: 121 NEVFRIAEDMPQGKSVNEE-FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
            E F +   M  G+ ++ + F    ++ +LC        + ++  M    + P +V +++
Sbjct: 213 TEAFNLFSQM-VGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFST 271

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           +V  LCK G    A+++++  IQ G  P   TY  L++G C +S++++A KV   M+ K 
Sbjct: 272 VVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKG 331

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                                                PDVI+  T+ING+CK+ +I++A+
Sbjct: 332 -----------------------------------FAPDVISYTTLINGYCKIHKIDKAM 356

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
            +  +M   ++  PD  T+ T++ GL +VGR+Q+A+ L ++ M  RG  P +VTY+ +L 
Sbjct: 357 YLFEEMCRKEWI-PDTKTYNTLMHGLCHVGRLQDAIALFHE-MVARGQMPDLVTYSILLD 414

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
            L +   +EEA  +   +    +  D   Y I+IDG+C + +L+ A+  + ++     +H
Sbjct: 415 SLCKNCHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLS-SKGLH 473

Query: 420 DN-YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI 478
            + + Y  MI GLC+ G ++EA     E+  +  +P+   YN +  G  + +    A Q+
Sbjct: 474 PSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGCTYNTIARGFLQNNETLRAIQL 533

Query: 479 LREMRKNGLNPDAVTWRILDKLHGNRGND 507
           L EM   G + D  T  +L ++  + G D
Sbjct: 534 LEEMLARGFSADVSTTTLLVEMLSDDGLD 562



 Score =  213 bits (541), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 132/473 (27%), Positives = 231/473 (48%), Gaps = 7/473 (1%)

Query: 27  PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVL 86
           P++V +  L+    +         +  +M   GV PN  T ++L+        V  A  +
Sbjct: 54  PSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINSFCHLNRVGFAFSV 113

Query: 87  MFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMI 146
           + K+  ++  + D +     F  L+  LC EG + E   + + M            G +I
Sbjct: 114 LAKIL-KLGHQPDPTT----FTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLI 168

Query: 147 DSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL 206
           + LC+ G    A R++  M +    P +V Y SI+  LCK      A+ L  + +  G  
Sbjct: 169 NGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGIS 228

Query: 207 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 266
           P   TY  LV  LC   + +    +L  M++ K +    I +  + ALC     TE   +
Sbjct: 229 PDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEI 288

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
           +  M+Q   +PDV+T  T+++G C    ++EA+KV + MV   F APD +++TT+I G  
Sbjct: 289 VDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGF-APDVISYTTLINGYC 347

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
            + +I +A+  L++ M ++ + P   TYN ++ GL  + R+++A  +F+ M+  G + D 
Sbjct: 348 KIHKIDKAM-YLFEEMCRKEWIPDTKTYNTLMHGLCHVGRLQDAIALFHEMVARGQMPDL 406

Query: 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE 446
            TY+I++D LC++  L+EA      I   +   D  VY  +I G+CR+G++  A      
Sbjct: 407 VTYSILLDSLCKNCHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSN 466

Query: 447 LVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
           L   G+ P++  YN++I G CK  +  EA ++  EM  N  +PD  T+  + +
Sbjct: 467 LSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGCTYNTIAR 519



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 79/276 (28%), Positives = 136/276 (49%), Gaps = 42/276 (15%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           MD  C  S + EA K+F  M  +G  P+V+SYTTLI+GYC+  ++D A  +F+EM     
Sbjct: 308 MDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEW 367

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P++ TY+ L+ G+     ++ A  L  ++  R  +  DL      ++ L+DSLC+  ++
Sbjct: 368 IPDTKTYNTLMHGLCHVGRLQDAIALFHEMVAR-GQMPDL----VTYSILLDSLCKNCHL 422

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMI-DSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
            E   + + + +  ++N +    ++I D +CR+G    A  +   +  +GL PS+ +YN 
Sbjct: 423 EEAMALLKAI-EASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNI 481

Query: 180 IVHGLCKHG--------------------GC---------------MRAYQLLEEGIQFG 204
           ++HGLCK G                    GC               +RA QLLEE +  G
Sbjct: 482 MIHGLCKRGLLNEANKLFMEMDGNDCSPDGCTYNTIARGFLQNNETLRAIQLLEEMLARG 541

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +     T  +LVE L  +   + +  ++  +LS+ D
Sbjct: 542 FSADVSTTTLLVEMLSDDGLDQSSCFLMLSVLSEDD 577


>gi|291622145|emb|CBJ23782.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score =  215 bits (548), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 143/525 (27%), Positives = 256/525 (48%), Gaps = 36/525 (6%)

Query: 6   GLS--RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           GLS  ++ +A  LF +M      P+++ ++ L+    +  + DV   + ++M++ G+  N
Sbjct: 56  GLSELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHN 115

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNN-----------AAFANLVD 112
             TYS+L+    R   +  A  ++ K+ +   E + +++++           +    LVD
Sbjct: 116 HYTYSILLNCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVD 175

Query: 113 SLCREGY-------------------VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSG 153
            +   GY                    +E   + + M       + F  G +++ LC+ G
Sbjct: 176 QMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRG 235

Query: 154 RNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYK 213
               A  ++  M K  +  ++V YN+I+ GLCK+     A+ L  +    G  P   TY 
Sbjct: 236 DIDLALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYN 295

Query: 214 VLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQT 273
            L+  LC       A ++L  M+ +K        N  + A        E   +   M+Q 
Sbjct: 296 SLISCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQR 355

Query: 274 QCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQE 333
              P+++T N++INGFC   R++EA ++   MV+ K C PD VT+ T+I G     R++E
Sbjct: 356 SIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVS-KDCLPDVVTYNTLIKGFCKAKRVEE 414

Query: 334 ALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVI 393
            +  L++ M QRG     VTYN +++GLF+    + A+++F  M+  GV  D  TY+I++
Sbjct: 415 GME-LFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILL 473

Query: 394 DGLCESNQLDEAKRFWDDIVWPSNIHDN-YVYAAMIKGLCRSGKIHEAVHFLYELVDSGV 452
           DGLC+  +L++A   + + +  S +  N Y Y  MI+G+C++GK+ +       L   GV
Sbjct: 474 DGLCKYGKLEKALVVF-EYLQKSKMEPNIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGV 532

Query: 453 TPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            PN++ Y  +I G C+  +K EA  + REM+++G  PD+  +  L
Sbjct: 533 KPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTL 577



 Score =  212 bits (539), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 137/501 (27%), Positives = 237/501 (47%), Gaps = 43/501 (8%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C   R+ EA  L   M   G+ P+ V++ TLIHG     +   A  + D M   G  P+ 
Sbjct: 162 CHGKRISEAVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDL 221

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
            TY  +V G+ +  D++ A  L+ K+     E+  +  N   +  ++D LC+  ++++ F
Sbjct: 222 FTYGTVVNGLCKRGDIDLALSLLKKM-----EKGKIEANVVIYNTIIDGLCKYKHMDDAF 276

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
            +   M       + F    +I  LC  GR   ASR++  M +R + P++V++NS++   
Sbjct: 277 DLFNKMETKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAF 336

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
            K G  + A +L +E IQ    P+  TY  L+ G C    L++A+++   M+SK      
Sbjct: 337 AKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSK------ 390

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
                                         C PDV+T NT+I GFCK  R+EE +++  +
Sbjct: 391 -----------------------------DCLPDVVTYNTLIKGFCKAKRVEEGMELFRE 421

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
           M + +    + VT+ T+I GL   G    A   +++ M   G  P I+TY+ +L GL + 
Sbjct: 422 M-SQRGLVGNTVTYNTLIQGLFQAGDCDMAQK-IFKKMVSDGVPPDIITYSILLDGLCKY 479

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY 424
            ++E+A  VF  +    +  +  TY I+I+G+C++ ++++    +  +       +  +Y
Sbjct: 480 GKLEKALVVFEYLQKSKMEPNIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIY 539

Query: 425 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484
             MI G CR G   EA     E+ + G  P+  CYN +I    +   K  + ++++EMR 
Sbjct: 540 TTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARLRDGDKAASAELIKEMRS 599

Query: 485 NGLNPDAVTWR-ILDKLHGNR 504
            G   DA T   +++ LH  R
Sbjct: 600 CGFVGDASTISMVINMLHDGR 620



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 107/405 (26%), Positives = 194/405 (47%), Gaps = 13/405 (3%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC    +  A  L   M+      NVV Y T+I G C+   MD A+ +F++M   G+ P+
Sbjct: 231 LCKRGDIDLALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPD 290

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             TY+ L+  +        A+ L+  + ER      ++ N   F +L+D+  +EG + E 
Sbjct: 291 VFTYNSLISCLCNYGRWSDASRLLSDMIER-----KINPNVVTFNSLIDAFAKEGKLIEA 345

Query: 124 FRIAEDMPQGKSVNEEFAC-GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
            ++ ++M Q +S++        +I+  C   R   A ++  +M  +   P +V+YN+++ 
Sbjct: 346 EKLFDEMIQ-RSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLIK 404

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           G CK        +L  E  Q G + +  TY  L++GL    D + A+K+ + M+S     
Sbjct: 405 GFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPP 464

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
                +I L  LC      + L V  ++ +++ +P++ T N +I G CK G++E+   + 
Sbjct: 465 DIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPNIYTYNIMIEGMCKAGKVEDGWDLF 524

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
             + + K   P+ + +TT+I G    G  +EA + L++ M + G  P    YN ++R   
Sbjct: 525 CSL-SLKGVKPNVIIYTTMISGFCRKGLKEEA-DALFREMKEDGTLPDSGCYNTLIRARL 582

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVI----DGLCESNQLD 403
           R      + E+   M   G V D++T ++VI    DG  E + L+
Sbjct: 583 RDGDKAASAELIKEMRSCGFVGDASTISMVINMLHDGRLEKSYLE 627



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/215 (23%), Positives = 98/215 (45%), Gaps = 4/215 (1%)

Query: 287 NGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
           NG  ++ ++++A+ +  +MV  +   P  + F+ ++  +  + +    ++L  Q M   G
Sbjct: 55  NGLSEL-KLDDAVALFGEMVKSR-PFPSIIEFSKLLSAIAKMNKFDVVISLGEQ-MQNLG 111

Query: 347 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
                 TY+ +L    R  ++  A  V   M+ +G   D  T + +++G C   ++ EA 
Sbjct: 112 IPHNHYTYSILLNCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAV 171

Query: 407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466
              D +V      D   +  +I GL    K  EAV  +  +V  G  P++  Y  V++G 
Sbjct: 172 ALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGL 231

Query: 467 CKLSMKREAYQILREMRKNGLNPDAVTWR-ILDKL 500
           CK      A  +L++M K  +  + V +  I+D L
Sbjct: 232 CKRGDIDLALSLLKKMEKGKIEANVVIYNTIIDGL 266



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 46/79 (58%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ +C   +V +   LF  +  +G  PNV+ YTT+I G+CR G  + A  +F EM+  G 
Sbjct: 508 IEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGT 567

Query: 61  LPNSLTYSVLVRGVLRTRD 79
           LP+S  Y+ L+R  LR  D
Sbjct: 568 LPDSGCYNTLIRARLRDGD 586



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 66/148 (44%), Gaps = 14/148 (9%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   ++ +A  +F  ++     PN+ +Y  +I G C+ G+++  + +F  +   GV
Sbjct: 473 LDGLCKYGKLEKALVVFEYLQKSKMEPNIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGV 532

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN + Y+ ++ G  R    E A+     L+  MKE+            L DS C    +
Sbjct: 533 KPNVIIYTTMISGFCRKGLKEEADA----LFREMKED----------GTLPDSGCYNTLI 578

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDS 148
               R  +     + + E  +CG + D+
Sbjct: 579 RARLRDGDKAASAELIKEMRSCGFVGDA 606


>gi|225189439|emb|CAR70003.1| pentatricopeptide repeat(PPR)-containing protein At1g12700
           [Arabidopsis thaliana]
          Length = 602

 Score =  215 bits (548), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 134/483 (27%), Positives = 248/483 (51%), Gaps = 42/483 (8%)

Query: 24  GHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERA 83
           G   N+ +   +I+ +CR  +   AY V  ++   G  P++ T++ L+ G+     V +A
Sbjct: 118 GIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLEGKVSKA 177

Query: 84  NVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACG 143
            VL+ ++ E   + + ++ N+     +V+ +CR G  +  F +   M +     + F   
Sbjct: 178 VVLVDRMVENGCQPDMVTYNS-----IVNGICRSGDTSLAFDMLRKMEERNVKADVFTYS 232

Query: 144 HMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQF 203
            +IDSLCR G    A  +   M  +G+  S+V+YNS+V GLCK G       LL++ +  
Sbjct: 233 TIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSR 292

Query: 204 GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTEL 263
             +P+  T+ VL++    E  L++A ++ + M+++                         
Sbjct: 293 EIVPNVITFNVLLDVFVKEGKLQEANELYKEMITR------------------------- 327

Query: 264 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF 323
                        P++IT NT+++G+C   R+ EA  +L+ MV  K C+PD VTFT++I 
Sbjct: 328 ----------GISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNK-CSPDIVTFTSLIK 376

Query: 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 383
           G   V R+ + + + ++ + +RG     VTY+ +++G  +  +++ A+E+F  M+  GV+
Sbjct: 377 GYCMVKRVDDGMKV-FRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVL 435

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
            D  TY I++DGLC++ +L++A   ++D+          +Y  +I+G+C+ GK+ +A + 
Sbjct: 436 PDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNL 495

Query: 444 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGN 503
              L   GV PN++ Y V+I G CK     EA  +LR+M ++G  P+  T+  L + H  
Sbjct: 496 FCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLR 555

Query: 504 RGN 506
            G+
Sbjct: 556 DGD 558



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 106/441 (24%), Positives = 221/441 (50%), Gaps = 7/441 (1%)

Query: 24  GHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERA 83
           G+ P+  ++ TLI+G C  G++  A  + D M   G  P+ +TY+ +V G+ R+ D    
Sbjct: 153 GYEPDTTTFNTLINGLCLEGKVSKAVVLVDRMVENGCQPDMVTYNSIVNGICRSGDTS-- 210

Query: 84  NVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACG 143
             L F +  +M EE ++  +   ++ ++DSLCR+G ++    + ++M      +      
Sbjct: 211 --LAFDMLRKM-EERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYN 267

Query: 144 HMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQF 203
            ++  LC++G+ +  + ++  M  R + P+++++N ++    K G    A +L +E I  
Sbjct: 268 SLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITR 327

Query: 204 GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTEL 263
           G  P+  TY  L++G C ++ L +A  +L  M+  K           ++  C++K   + 
Sbjct: 328 GISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDG 387

Query: 264 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF 323
           + V   + +     + +T + ++ GFC+ G+I+ A ++  +MV+     PD +T+  ++ 
Sbjct: 388 MKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGV-LPDVMTYGILLD 446

Query: 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 383
           GL + G++++AL + ++ + +     GIV Y  ++ G+ +  +VE+A  +F  +   GV 
Sbjct: 447 GLCDNGKLEKALEI-FEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVK 505

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
            +  TY ++I GLC+   L EA      +    N  ++  Y  +I+   R G +  +   
Sbjct: 506 PNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKL 565

Query: 444 LYELVDSGVTPNIVCYNVVID 464
           + E+   G + +     +VID
Sbjct: 566 IEEMKSCGFSADASSIKMVID 586



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 116/468 (24%), Positives = 234/468 (50%), Gaps = 25/468 (5%)

Query: 41  RTGEMDV----AYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKE 96
           R+G +D+    A  +F EM     LP  + +S     + RT+       L+    +++ E
Sbjct: 61  RSGIVDIKKDDAIALFQEMIRSRPLPGLVDFSRFFSAIARTKQFN----LVLDFCKQL-E 115

Query: 97  EEDLSVNNAAFANLVDSLCR-------EGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSL 149
              ++ N      +++  CR          + +V ++  + P   + N       +I+ L
Sbjct: 116 LNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYE-PDTTTFNT------LINGL 168

Query: 150 CRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSE 209
           C  G+   A  +V  M + G  P +V+YNSIV+G+C+ G    A+ +L +  +       
Sbjct: 169 CLEGKVSKAVVLVDRMVENGCQPDMVTYNSIVNGICRSGDTSLAFDMLRKMEERNVKADV 228

Query: 210 HTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVF 269
            TY  +++ LC +  ++ A  + + M +K         N  +R LC      +   +L  
Sbjct: 229 FTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKD 288

Query: 270 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG 329
           M+  +  P+VIT N +++ F K G+++EA ++  +M+  +  +P+ +T+ T++ G     
Sbjct: 289 MVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMIT-RGISPNIITYNTLMDGYCMQN 347

Query: 330 RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTY 389
           R+ EA N+L  +M +   SP IVT+ ++++G   ++RV++  +VF  +   G+VA++ TY
Sbjct: 348 RLSEANNML-DLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTY 406

Query: 390 AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449
           +I++ G C+S ++  A+  + ++V    + D   Y  ++ GLC +GK+ +A+    +L  
Sbjct: 407 SILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQK 466

Query: 450 SGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           S +   IV Y  +I+G CK     +A+ +   +   G+ P+ +T+ ++
Sbjct: 467 SKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVM 514



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 111/501 (22%), Positives = 226/501 (45%), Gaps = 85/501 (16%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   +V +A  L   M   G  P++V+Y ++++G CR+G+  +A+ +  +M    V
Sbjct: 165 INGLCLEGKVSKAVVLVDRMVENGCQPDMVTYNSIVNGICRSGDTSLAFDMLRKMEERNV 224

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             +  TYS                                         ++DSLCR+G +
Sbjct: 225 KADVFTYST----------------------------------------IIDSLCRDGCI 244

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +    + ++M      +       ++  LC++G+ +  + ++  M  R + P+++++N +
Sbjct: 245 DAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVL 304

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +    K G    A +L +E I  G  P+  TY  L++G C ++ L +A  +L  M+  K 
Sbjct: 305 LDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNK- 363

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                             C PD++T  ++I G+C + R+++ +K
Sbjct: 364 ----------------------------------CSPDIVTFTSLIKGYCMVKRVDDGMK 389

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           V  + ++ +    +AVT++ ++ G    G+I+ A   L+Q M   G  P ++TY  +L G
Sbjct: 390 VFRN-ISKRGLVANAVTYSILVQGFCQSGKIKLA-EELFQEMVSHGVLPDVMTYGILLDG 447

Query: 361 LFRLRRVEEAKEVFNCM----LGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416
           L    ++E+A E+F  +    + +G+V     Y  +I+G+C+  ++++A   +  +    
Sbjct: 448 LCDNGKLEKALEIFEDLQKSKMDLGIVM----YTTIIEGMCKGGKVEDAWNLFCSLPCKG 503

Query: 417 NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAY 476
              +   Y  MI GLC+ G + EA   L ++ + G  PN   YN +I    +      + 
Sbjct: 504 VKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASA 563

Query: 477 QILREMRKNGLNPDAVTWRIL 497
           +++ EM+  G + DA + +++
Sbjct: 564 KLIEEMKSCGFSADASSIKMV 584



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 106/407 (26%), Positives = 177/407 (43%), Gaps = 80/407 (19%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   +  +   L  DM SR  VPNV+++  L+  + + G++  A +++ EM   G+ PN
Sbjct: 273 LCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPN 332

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY+ L+ G      +  AN  M  L  R K   D+      F +L+     +GY    
Sbjct: 333 IITYNTLMDGYCMQNRLSEANN-MLDLMVRNKCSPDI----VTFTSLI-----KGY---- 378

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
                                     C   R     +V   + KRGL  + V+Y+ +V G
Sbjct: 379 --------------------------CMVKRVDDGMKVFRNISKRGLVANAVTYSILVQG 412

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            C+ G    A +L +E +  G LP   TY +L++GLC    LEKA ++ +      D+ +
Sbjct: 413 FCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFE------DLQK 466

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
           +++                                ++   T+I G CK G++E+A  +  
Sbjct: 467 SKM-----------------------------DLGIVMYTTIIEGMCKGGKVEDAWNLFC 497

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            +   K   P+ +T+T +I GL   G + EA N+L + M + G +P   TYN ++R   R
Sbjct: 498 SLPC-KGVKPNVMTYTVMISGLCKKGSLSEA-NILLRKMEEDGNAPNDCTYNTLIRAHLR 555

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD 410
              +  + ++   M   G  AD+++  +VID L  S +LD  K F D
Sbjct: 556 DGDLTASAKLIEEMKSCGFSADASSIKMVIDMLL-SGELD--KSFLD 599


>gi|334182313|ref|NP_172058.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|334182315|ref|NP_001154307.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|122236365|sp|Q0WVK7.1|PPR12_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g05670, mitochondrial; Flags: Precursor
 gi|110741796|dbj|BAE98841.1| hypothetical protein [Arabidopsis thaliana]
 gi|332189752|gb|AEE27873.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|332189753|gb|AEE27874.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
          Length = 741

 Score =  215 bits (547), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 133/491 (27%), Positives = 235/491 (47%), Gaps = 50/491 (10%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           +C L R+ EAH L   M+ +G+ P+V+SY+T+++GYCR GE+D  +K+ + M+  G+ PN
Sbjct: 256 VCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPN 315

Query: 64  SLTYSVLVRGVL----RTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGY 119
           S  Y  ++ G+L    +  + E A   M +        + +  +   +  L+D  C+ G 
Sbjct: 316 SYIYGSII-GLLCRICKLAEAEEAFSEMIR--------QGILPDTVVYTTLIDGFCKRGD 366

Query: 120 VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           +    +   +M       +      +I   C+ G    A ++ + M  +GL P  V++  
Sbjct: 367 IRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTE 426

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           +++G CK G    A+++    IQ G  P+  TY  L++GLC E DL+ A ++L  M    
Sbjct: 427 LINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMW--- 483

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                                           +   QP++ T N+++NG CK G IEEA+
Sbjct: 484 --------------------------------KIGLQPNIFTYNSIVNGLCKSGNIEEAV 511

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           K++ +  A    A D VT+TT++      G + +A  +L + M  +G  P IVT+N ++ 
Sbjct: 512 KLVGEFEAAGLNA-DTVTYTTLMDAYCKSGEMDKAQEILKE-MLGKGLQPTIVTFNVLMN 569

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
           G      +E+ +++ N ML  G+  ++TT+  ++   C  N L  A   + D+       
Sbjct: 570 GFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGP 629

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           D   Y  ++KG C++  + EA     E+   G + ++  Y+V+I G  K     EA ++ 
Sbjct: 630 DGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVF 689

Query: 480 REMRKNGLNPD 490
            +MR+ GL  D
Sbjct: 690 DQMRREGLAAD 700



 Score =  195 bits (495), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 119/430 (27%), Positives = 217/430 (50%), Gaps = 19/430 (4%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC + ++ EA + F +M  +G +P+ V YTTLI G+C+ G++  A K F EM    + P+
Sbjct: 326 LCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPD 385

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            LTY+ ++ G  +  D+  A  L  +++ +      L  ++  F  L++  C+ G++ + 
Sbjct: 386 VLTYTAIISGFCQIGDMVEAGKLFHEMFCK-----GLEPDSVTFTELINGYCKAGHMKDA 440

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           FR+   M Q            +ID LC+ G    A+ +++ M K GL P++ +YNSIV+G
Sbjct: 441 FRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNG 500

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LCK G    A +L+ E    G      TY  L++  C   +++KA+++L+ ML K     
Sbjct: 501 LCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPT 560

Query: 244 TRICNIYLRALCL---IKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
               N+ +   CL   +++  +LLN   +ML     P+  T N+++  +C    ++ A  
Sbjct: 561 IVTFNVLMNGFCLHGMLEDGEKLLN---WMLAKGIAPNATTFNSLVKQYCIRNNLKAATA 617

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +  DM + +   PD  T+  ++ G      ++EA   L+Q M  +G+S  + TY+ +++G
Sbjct: 618 IYKDMCS-RGVGPDGKTYENLVKGHCKARNMKEAW-FLFQEMKGKGFSVSVSTYSVLIKG 675

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
             + ++  EA+EVF+ M   G+ AD   +    D   +  + D      D+I+      +
Sbjct: 676 FLKRKKFLEAREVFDQMRREGLAADKEIFDFFSDTKYKGKRPDTIVDPIDEII------E 729

Query: 421 NYVYAAMIKG 430
           NY+    ++G
Sbjct: 730 NYLVDEQLRG 739



 Score =  175 bits (443), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 123/497 (24%), Positives = 228/497 (45%), Gaps = 13/497 (2%)

Query: 10  VGEAHKLFFDM-----KSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           V ++   FFD+     K  G  P V  +          G +  A +VF++M + G++ + 
Sbjct: 153 VTDSFVQFFDLLVYTYKDWGSDPRV--FDVFFQVLVDFGLLREARRVFEKMLNYGLVLSV 210

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
            + +V +  + +        +++F    R   E  +  N A++  ++  +C+ G + E  
Sbjct: 211 DSCNVYLTRLSKDCYKTATAIIVF----REFPEVGVCWNVASYNIVIHFVCQLGRIKEAH 266

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
            +   M       +  +   +++  CR G      +++ VM+++GL P+   Y SI+  L
Sbjct: 267 HLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLL 326

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
           C+      A +   E I+ G LP    Y  L++G C   D+  A K    M S+      
Sbjct: 327 CRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDV 386

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
                 +   C I +  E   +   M     +PD +T   +ING+CK G +++A +V N 
Sbjct: 387 LTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNH 446

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
           M+    C+P+ VT+TT+I GL   G +  A  LL++ M + G  P I TYN+++ GL + 
Sbjct: 447 MIQAG-CSPNVVTYTTLIDGLCKEGDLDSANELLHE-MWKIGLQPNIFTYNSIVNGLCKS 504

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY 424
             +EEA ++       G+ AD+ TY  ++D  C+S ++D+A+    +++          +
Sbjct: 505 GNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTF 564

Query: 425 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484
             ++ G C  G + +    L  ++  G+ PN   +N ++   C  +  + A  I ++M  
Sbjct: 565 NVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCS 624

Query: 485 NGLNPDAVTWRILDKLH 501
            G+ PD  T+  L K H
Sbjct: 625 RGVGPDGKTYENLVKGH 641



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 102/362 (28%), Positives = 187/362 (51%), Gaps = 2/362 (0%)

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
           +I  +C+ GR   A  ++ +M  +G TP ++SY+++V+G C+ G   + ++L+E   + G
Sbjct: 252 VIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKG 311

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL 264
             P+ + Y  ++  LC    L +A +    M+ +  +  T +    +   C   +     
Sbjct: 312 LKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAAS 371

Query: 265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 324
                M      PDV+T   +I+GFC++G + EA K+ ++M   K   PD+VTFT +I G
Sbjct: 372 KFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFC-KGLEPDSVTFTELING 430

Query: 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 384
               G +++A  + +  M Q G SP +VTY  ++ GL +   ++ A E+ + M  IG+  
Sbjct: 431 YCKAGHMKDAFRV-HNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQP 489

Query: 385 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFL 444
           +  TY  +++GLC+S  ++EA +   +        D   Y  ++   C+SG++ +A   L
Sbjct: 490 NIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEIL 549

Query: 445 YELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNR 504
            E++  G+ P IV +NV+++G C   M  +  ++L  M   G+ P+A T+  L K +  R
Sbjct: 550 KEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIR 609

Query: 505 GN 506
            N
Sbjct: 610 NN 611



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 125/455 (27%), Positives = 206/455 (45%), Gaps = 24/455 (5%)

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMK----------------EEEDLSVNNAAFANLVD 112
           +++   + ++D++ A  L+   WER K                  +D   +   F     
Sbjct: 124 IVIHLAVASKDLKVAQSLISSFWERPKLNVTDSFVQFFDLLVYTYKDWGSDPRVFDVFFQ 183

Query: 113 SLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVY-VMRKRGLT 171
            L   G + E  R+ E M     V    +C   +  L +       + +V+    + G+ 
Sbjct: 184 VLVDFGLLREARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKTATAIIVFREFPEVGVC 243

Query: 172 PSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKV 231
            ++ SYN ++H +C+ G    A+ LL      GY P   +Y  +V G C   +L+K  K+
Sbjct: 244 WNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKL 303

Query: 232 LQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK 291
           ++ M  K     + I    +  LC I    E       M++    PD +   T+I+GFCK
Sbjct: 304 IEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCK 363

Query: 292 MGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGI 351
            G I  A K   +M   +   PD +T+T II G   +G + EA  L ++ M  +G  P  
Sbjct: 364 RGDIRAASKFFYEM-HSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHE-MFCKGLEPDS 421

Query: 352 VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDD 411
           VT+  ++ G  +   +++A  V N M+  G   +  TY  +IDGLC+   LD A     +
Sbjct: 422 VTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHE 481

Query: 412 IVWPSNIHDN-YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLS 470
           + W   +  N + Y +++ GLC+SG I EAV  + E   +G+  + V Y  ++D  CK  
Sbjct: 482 M-WKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSG 540

Query: 471 MKREAYQILREMRKNGLNPDAVTWRILDK---LHG 502
              +A +IL+EM   GL P  VT+ +L     LHG
Sbjct: 541 EMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHG 575


>gi|449449677|ref|XP_004142591.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Cucumis sativus]
          Length = 748

 Score =  215 bits (547), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 141/491 (28%), Positives = 230/491 (46%), Gaps = 46/491 (9%)

Query: 3   QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
            LC L +V EAH+L   M  R   P+VVSY+T+I GYC  GE+  A K+ D+M+  G+ P
Sbjct: 267 SLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCHLGELKKALKLMDDMQIKGLKP 326

Query: 63  NSLTYSVLVRGVLRT-RDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVN 121
           N  TY+ ++  + +  +  E   VL      R    + +  +N  +  L+    + G+V 
Sbjct: 327 NRYTYNSIILLLCKIGKSFEAEKVL------REMMSQKIIPDNVVYTTLIHGFFKLGHVR 380

Query: 122 EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
              +  ++M   K   +      +I    + G+      + + M  RGL P  V+Y +++
Sbjct: 381 TANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLI 440

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
              CK G  + A+ L  E +Q G  P+  TY  L++GLC   +L+ A ++L  M  K   
Sbjct: 441 DVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKG-- 498

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
                                             Q +V   N+++NG CK G IE+A+K+
Sbjct: 499 ---------------------------------LQLNVCIYNSMVNGICKAGNIEQAIKL 525

Query: 302 LNDM-VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           + +M VAG    PDA+T+TT+I     +G I +A  LL Q M  RG  P +VT+N ++ G
Sbjct: 526 MKEMEVAG--IDPDAITYTTVIDAYCRLGDIDKAHKLL-QEMLDRGLQPTVVTFNVLMNG 582

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
              L  +E+   +   ML  G+V D+ TY  ++   C  N ++   + +  +       D
Sbjct: 583 FCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPD 642

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
           +  Y  +IKG C++  + EA     E+++ G  P +  YN +I    K     EA ++  
Sbjct: 643 SNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKKKILEARELFE 702

Query: 481 EMRKNGLNPDA 491
           EMR +GL  D 
Sbjct: 703 EMRGHGLVADG 713



 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 118/391 (30%), Positives = 201/391 (51%), Gaps = 7/391 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC + +  EA K+  +M S+  +P+ V YTTLIHG+ + G +  A K FDEM    + P+
Sbjct: 338 LCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPD 397

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY+ L++G  +   V     L  ++  R      L  +   +  L+D  C+ G +   
Sbjct: 398 YITYTTLIQGFGQGGKVIEPQNLFHEMISR-----GLKPDEVTYTTLIDVYCKAGEMVNA 452

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           F +  +M Q          G +ID LC+ G    A+ ++  MRK+GL  ++  YNS+V+G
Sbjct: 453 FSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNG 512

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           +CK G   +A +L++E    G  P   TY  +++  C   D++KA K+LQ ML +     
Sbjct: 513 ICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPT 572

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               N+ +   C++    +   +L +ML+    PD IT NT++   C    +    K+  
Sbjct: 573 VVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYK 632

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            M   +  APD+ T+  +I G      ++EA   LY+ M ++GY P + +YNA+++  ++
Sbjct: 633 RM-RNQGVAPDSNTYNILIKGHCKARNLKEAW-FLYKEMIEKGYVPTVTSYNALIKRFYK 690

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVID 394
            +++ EA+E+F  M G G+VAD   Y   +D
Sbjct: 691 KKKILEARELFEEMRGHGLVADGEIYNFFVD 721



 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 128/501 (25%), Positives = 225/501 (44%), Gaps = 46/501 (9%)

Query: 6   GLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSL 65
           G+      H+L +  K  G  PN +++          G +  A K+ D++   G++    
Sbjct: 169 GVKMTQFTHRLIYTYKYWG--PNPIAFDIFFQVLVEIGHLSEARKLLDKLLSYGLVVTVD 226

Query: 66  TYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFR 125
           + +  +  +    +     + +F        E  +S N  ++  ++ SLCR G V E  R
Sbjct: 227 SCNAFLSRIANNSEGIEMAIKVFC-------EYGISWNTTSYNIIIYSLCRLGKVKEAHR 279

Query: 126 IAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLC 185
           +   M    S  +  +   +ID  C  G    A +++  M+ +GL P+  +YNSI+  LC
Sbjct: 280 LLMQMDFRSSTPDVVSYSTVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLC 339

Query: 186 KHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTR 245
           K G    A ++L E +    +P    Y  L+ G      +  A K    MLSKK      
Sbjct: 340 KIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKK------ 393

Query: 246 ICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM 305
                                          PD IT  T+I GF + G++ E   + ++M
Sbjct: 394 -----------------------------ISPDYITYTTLIQGFGQGGKVIEPQNLFHEM 424

Query: 306 VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLR 365
           ++ +   PD VT+TT+I      G +  A +L +  M Q G +P IVTY A++ GL +  
Sbjct: 425 IS-RGLKPDEVTYTTLIDVYCKAGEMVNAFSL-HNEMVQMGMTPNIVTYGALIDGLCKHG 482

Query: 366 RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYA 425
            ++ A E+ + M   G+  +   Y  +++G+C++  +++A +   ++       D   Y 
Sbjct: 483 ELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYT 542

Query: 426 AMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN 485
            +I   CR G I +A   L E++D G+ P +V +NV+++G C L M  +  ++L  M + 
Sbjct: 543 TVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEK 602

Query: 486 GLNPDAVTWRILDKLHGNRGN 506
           G+ PDA+T+  L K H  R +
Sbjct: 603 GIVPDAITYNTLMKQHCIRNS 623



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 81/339 (23%), Positives = 147/339 (43%), Gaps = 45/339 (13%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C    +  A  L  +M   G  PN+V+Y  LI G C+ GE+D A ++ DEMR  G+
Sbjct: 440 IDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGL 499

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAA--FANLVDSLCREG 118
             N   Y+ +V G+ +  ++E+A  L       MKE E   ++  A  +  ++D+ CR G
Sbjct: 500 QLNVCIYNSMVNGICKAGNIEQAIKL-------MKEMEVAGIDPDAITYTTVIDAYCRLG 552

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
            +++  ++ ++                                   M  RGL P++V++N
Sbjct: 553 DIDKAHKLLQE-----------------------------------MLDRGLQPTVVTFN 577

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
            +++G C  G      +LL   ++ G +P   TY  L++  C  + +    K+ + M ++
Sbjct: 578 VLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQ 637

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
                +   NI ++  C  +N  E   +   M++    P V + N +I  F K  +I EA
Sbjct: 638 GVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKKKILEA 697

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNL 337
            ++  +M  G     D   +   +      G ++  LNL
Sbjct: 698 RELFEEM-RGHGLVADGEIYNFFVDMCYEEGDVEITLNL 735


>gi|414592066|tpg|DAA42637.1| TPA: hypothetical protein ZEAMMB73_021738 [Zea mays]
          Length = 768

 Score =  215 bits (547), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 156/533 (29%), Positives = 250/533 (46%), Gaps = 45/533 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           MD L   +   +AHK++  M + G  P+  ++T  +  +C TG   VA ++   +   G 
Sbjct: 113 MDALVNAAYHDQAHKVYVRMLAAGVAPDARTHTVRLKSFCLTGRPHVALRLLRSLSERGC 172

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
                 Y  +VRG+        A  L  ++  R     D+  + A F N++ +LC++G V
Sbjct: 173 DAKPAAYCTVVRGLYAHGHGYNARHLFDEMLGR-----DVFPDVATFNNVLHALCQKGDV 227

Query: 121 NEV-FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVV-----YV---------- 164
            E    +A+ + +G S N+ F C   I  LC  GR   A  +V     YV          
Sbjct: 228 MESGALLAKVLKRGMSANK-FTCNIWIRGLCEDGRLEEAVALVERMGAYVAPDVVTYNTL 286

Query: 165 -------------------MRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY 205
                              M  +G  P   +YN+I+ G CK G    A +LL++ +  G+
Sbjct: 287 MRGLCKDSKVQEAAQYLGRMMNQGCIPDDFTYNTIIDGYCKSGMLQEATELLKDAVFKGF 346

Query: 206 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 265
           +P   TY  L+ GLC E D+E+A ++     +K       + N  ++ LC        L 
Sbjct: 347 VPDRVTYCSLINGLCAEGDIERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQ 406

Query: 266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 325
           V+  M++  C PD+ T N +ING CKMG I +A  V+ND +   +  PD  TF T+I G 
Sbjct: 407 VMNEMVEEGCHPDIWTYNIIINGLCKMGNISDAAVVMNDAIVKGYL-PDVFTFNTLIDGY 465

Query: 326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 385
               ++  AL L+ + M   G +P ++TYN+VL GL +  + +E  E F  M+  G   +
Sbjct: 466 CKRLKLDSALQLV-ERMWTYGIAPDVITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPN 524

Query: 386 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY 445
           + TY I+I+  C+ NQL+EA      +     + D   +  +I G CR+G +  A     
Sbjct: 525 AITYNILIENFCKINQLEEASGVIVRMCQDGLVPDAVSFNTLIHGFCRNGDLDGAYLLFQ 584

Query: 446 ELVDSGVTPNIVCYNVVIDG-ACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           +L + G +     +N++I   + KL+M+  A +I  EM   G  PD  T+RIL
Sbjct: 585 KLDEKGYSATADTFNILIGAYSSKLNMQM-AEKIFGEMISKGYKPDLYTYRIL 636



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 124/466 (26%), Positives = 222/466 (47%), Gaps = 8/466 (1%)

Query: 32  YTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLW 91
           Y   I  Y R G +  A   F+ M      P +  Y+ ++  ++     ++A+    K++
Sbjct: 74  YVASIQAYARAGRLRAAVDAFERMDLFACPPAAPAYNAIMDALVNAAYHDQAH----KVY 129

Query: 92  ERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCR 151
            RM     ++ +       + S C  G  +   R+   + +     +  A   ++  L  
Sbjct: 130 VRMLAA-GVAPDARTHTVRLKSFCLTGRPHVALRLLRSLSERGCDAKPAAYCTVVRGLYA 188

Query: 152 SGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHT 211
            G  + A  +   M  R + P + ++N+++H LC+ G  M +  LL + ++ G   ++ T
Sbjct: 189 HGHGYNARHLFDEMLGRDVFPDVATFNNVLHALCQKGDVMESGALLAKVLKRGMSANKFT 248

Query: 212 YKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFML 271
             + + GLC +  LE+A  +++ M +    D     N  +R LC      E    L  M+
Sbjct: 249 CNIWIRGLCEDGRLEEAVALVERMGAYVAPDVVTY-NTLMRGLCKDSKVQEAAQYLGRMM 307

Query: 272 QTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRI 331
              C PD  T NT+I+G+CK G ++EA ++L D V   F  PD VT+ ++I GL   G I
Sbjct: 308 NQGCIPDDFTYNTIIDGYCKSGMLQEATELLKDAVFKGF-VPDRVTYCSLINGLCAEGDI 366

Query: 332 QEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAI 391
           + AL L  +    +   P +V YN++++GL R   +  A +V N M+  G   D  TY I
Sbjct: 367 ERALELFNEAQ-AKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEEGCHPDIWTYNI 425

Query: 392 VIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 451
           +I+GLC+   + +A    +D +    + D + +  +I G C+  K+  A+  +  +   G
Sbjct: 426 IINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWTYG 485

Query: 452 VTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           + P+++ YN V++G CK    +E  +   EM   G  P+A+T+ IL
Sbjct: 486 IAPDVITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNIL 531



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 125/457 (27%), Positives = 217/457 (47%), Gaps = 42/457 (9%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M  LC  S+V EA +    M ++G +P+  +Y T+I GYC++G +  A ++  +    G 
Sbjct: 287 MRGLCKDSKVQEAAQYLGRMMNQGCIPDDFTYNTIIDGYCKSGMLQEATELLKDAVFKGF 346

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P+ +TY  L+ G+    D+ERA     +L+    + +DL  +   + +LV  LCR+G +
Sbjct: 347 VPDRVTYCSLINGLCAEGDIERA----LELFNE-AQAKDLKPDLVVYNSLVKGLCRQGLI 401

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
               ++         +NE                          M + G  P + +YN I
Sbjct: 402 LHALQV---------MNE--------------------------MVEEGCHPDIWTYNII 426

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++GLCK G    A  ++ + I  GYLP   T+  L++G C    L+ A ++++ M +   
Sbjct: 427 INGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWTYGI 486

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                  N  L  LC      E+      M+   C+P+ IT N +I  FCK+ ++EEA  
Sbjct: 487 APDVITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASG 546

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           V+  M       PDAV+F T+I G    G +  A  LL+Q + ++GYS    T+N ++  
Sbjct: 547 VIVRMCQDGL-VPDAVSFNTLIHGFCRNGDLDGAY-LLFQKLDEKGYSATADTFNILIGA 604

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
                 ++ A+++F  M+  G   D  TY I++DGLC++  +D A     +++    +  
Sbjct: 605 YSSKLNMQMAEKIFGEMISKGYKPDLYTYRILVDGLCKAANVDRAYAHLAEMISKGFVPS 664

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIV 457
              +  M+  L  + ++ EAV  ++ +V  GV P +V
Sbjct: 665 MATFGRMLNLLAMNHRVSEAVAIIHIMVRMGVVPEVV 701


>gi|224137250|ref|XP_002327079.1| predicted protein [Populus trichocarpa]
 gi|222835394|gb|EEE73829.1| predicted protein [Populus trichocarpa]
          Length = 795

 Score =  215 bits (547), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 146/597 (24%), Positives = 270/597 (45%), Gaps = 109/597 (18%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C   +V  A +   +M+  G   N VSY +L+ GY   G+++ A  V   M   GV+ N 
Sbjct: 77  CKAGKVERAVEFVREMEKLGFELNAVSYNSLVDGYVSLGDIEGAKGVLKFMSEKGVMRNK 136

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           +T ++L++G  +   VE A     K+   M++E+ + V+  A+  L+D  C+ G + +  
Sbjct: 137 VTLTLLIKGYCKQCKVEEAE----KVLREMEKEDGVVVDEYAYGALIDGYCKVGKMGDAI 192

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
           R+ ++M +       F C  +I+  C++G+ H   R++  MRK  L P   SY ++V G 
Sbjct: 193 RVRDEMLKVGLKMNLFVCNSLINGYCKNGQVHEGERLLMCMRKLDLKPDSYSYCTLVDGY 252

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK------ 238
           C+ G   +A+ + ++ ++ G  P+  TY  L++GLC   D + A ++   ML +      
Sbjct: 253 CRDGLSSKAFNVCDQMLRKGIEPTVVTYNTLLKGLCRFGDYKDALRLWHLMLQRGVTPNE 312

Query: 239 -----------KDVDRTRICNIY------------------LRALCLIKNPTELLNVLVF 269
                      K  D +R   ++                  +  LC +            
Sbjct: 313 VGYCTLLDGLFKMGDFSRALTLWDDILARGINKSIYAFNTMINGLCKMGEMDGAKETFKR 372

Query: 270 MLQTQCQPDVITLNTVINGFCKMGRIEEA---------------LKVLNDMVAGKFC--- 311
           M +  C+PD IT  T+ +G+CK+G +EEA               +++ N ++ G F    
Sbjct: 373 MEELGCKPDGITYRTLSDGYCKVGNVEEAFKIKEKMEKEEIFPSIEMYNSLIVGLFTSKK 432

Query: 312 ----------------APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN 355
                           +P+ VT+  +I G  + GR+ +A +  ++ M  +G++P ++  +
Sbjct: 433 ISKLIDLLAEMDTRGLSPNVVTYGALIAGWCDQGRLDKAFSAYFE-MIGKGFAPNVIICS 491

Query: 356 AVLRGLFRLRRVEEAKEVFNCMLGIGVVAD------------------------------ 385
            ++  L+RL R++EA  +   M+   +V D                              
Sbjct: 492 KIVSSLYRLGRIDEANMLLQKMVDFDLVLDHRCLEDFQNADIRKLDCWKIADTLDESAIK 551

Query: 386 -----STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEA 440
                +  Y I + GLC+S ++++A+RF+  +   S   DN+ Y  +I G   +G ++EA
Sbjct: 552 FSLPNNVVYNIAMAGLCKSGKVNDARRFFLGLSHGSFTPDNFTYCTLIHGFSAAGYVNEA 611

Query: 441 VHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            +   E+V+ G+ PNI  YN +++G CK      A ++  ++   GL P+ VT+ IL
Sbjct: 612 FNLRDEMVNKGLVPNITTYNALLNGLCKSGYLDRARRLFDKLHLKGLIPNVVTYNIL 668



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 134/528 (25%), Positives = 238/528 (45%), Gaps = 42/528 (7%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C   +V E  +L   M+     P+  SY TL+ GYCR G    A+ V D+M   G+ P  
Sbjct: 218 CKNGQVHEGERLLMCMRKLDLKPDSYSYCTLVDGYCRDGLSSKAFNVCDQMLRKGIEPTV 277

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           +TY+ L++G+ R  D + A     +LW  M +   ++ N   +  L+D L + G  +   
Sbjct: 278 VTYNTLLKGLCRFGDYKDA----LRLWHLMLQR-GVTPNEVGYCTLLDGLFKMGDFSRAL 332

Query: 125 RIAEDMPQGKSVNEE-FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            + +D+   + +N+  +A   MI+ LC+ G   GA      M + G  P  ++Y ++  G
Sbjct: 333 TLWDDI-LARGINKSIYAFNTMINGLCKMGEMDGAKETFKRMEELGCKPDGITYRTLSDG 391

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK G    A+++ E+  +    PS   Y  L+ GL     + K   +L  M ++     
Sbjct: 392 YCKVGNVEEAFKIKEKMEKEEIFPSIEMYNSLIVGLFTSKKISKLIDLLAEMDTRGLSPN 451

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                  +   C      +  +    M+     P+VI  + +++   ++GRI+EA  +L 
Sbjct: 452 VVTYGALIAGWCDQGRLDKAFSAYFEMIGKGFAPNVIICSKIVSSLYRLGRIDEANMLLQ 511

Query: 304 DMV----------------------------------AGKFCAPDAVTFTTIIFGLLNVG 329
            MV                                  A KF  P+ V +   + GL   G
Sbjct: 512 KMVDFDLVLDHRCLEDFQNADIRKLDCWKIADTLDESAIKFSLPNNVVYNIAMAGLCKSG 571

Query: 330 RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTY 389
           ++ +A    +  +    ++P   TY  ++ G      V EA  + + M+  G+V + TTY
Sbjct: 572 KVNDARRF-FLGLSHGSFTPDNFTYCTLIHGFSAAGYVNEAFNLRDEMVNKGLVPNITTY 630

Query: 390 AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449
             +++GLC+S  LD A+R +D +     I +   Y  +I G C+SG   EA+    +++ 
Sbjct: 631 NALLNGLCKSGYLDRARRLFDKLHLKGLIPNVVTYNILIDGYCKSGSPREALDLRGKMLK 690

Query: 450 SGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            G++P+I+ Y+ +I+G CK S   EA ++L EM+ + ++    T+  L
Sbjct: 691 EGISPSIITYSSLINGFCKQSDVEEAMKLLNEMKASNVDQTIATFSKL 738



 Score =  178 bits (451), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 140/533 (26%), Positives = 248/533 (46%), Gaps = 44/533 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C + ++G+A ++  +M   G   N+    +LI+GYC+ G++    ++   MR   +
Sbjct: 179 IDGYCKVGKMGDAIRVRDEMLKVGLKMNLFVCNSLINGYCKNGQVHEGERLLMCMRKLDL 238

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+S +Y  LV G  R     +A    F + ++M   + +      +  L+  LCR G  
Sbjct: 239 KPDSYSYCTLVDGYCRDGLSSKA----FNVCDQML-RKGIEPTVVTYNTLLKGLCRFGDY 293

Query: 121 NEVFRIAEDMPQ-GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
            +  R+   M Q G + NE   C  ++D L + G    A  +   +  RG+  S+ ++N+
Sbjct: 294 KDALRLWHLMLQRGVTPNEVGYC-TLLDGLFKMGDFSRALTLWDDILARGINKSIYAFNT 352

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           +++GLCK G    A +  +   + G  P   TY+ L +G C   ++E+A K+ + M  ++
Sbjct: 353 MINGLCKMGEMDGAKETFKRMEELGCKPDGITYRTLSDGYCKVGNVEEAFKIKEKMEKEE 412

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                 + N  +  L   K  ++L+++L  M      P+V+T   +I G+C  GR+++A 
Sbjct: 413 IFPSIEMYNSLIVGLFTSKKISKLIDLLAEMDTRGLSPNVVTYGALIAGWCDQGRLDKAF 472

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ--------------- 344
               +M+ GK  AP+ +  + I+  L  +GRI EA N+L Q M                 
Sbjct: 473 SAYFEMI-GKGFAPNVIICSKIVSSLYRLGRIDEA-NMLLQKMVDFDLVLDHRCLEDFQN 530

Query: 345 --------------------RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 384
                               +   P  V YN  + GL +  +V +A+  F  +       
Sbjct: 531 ADIRKLDCWKIADTLDESAIKFSLPNNVVYNIAMAGLCKSGKVNDARRFFLGLSHGSFTP 590

Query: 385 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFL 444
           D+ TY  +I G   +  ++EA    D++V    + +   Y A++ GLC+SG +  A    
Sbjct: 591 DNFTYCTLIHGFSAAGYVNEAFNLRDEMVNKGLVPNITTYNALLNGLCKSGYLDRARRLF 650

Query: 445 YELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            +L   G+ PN+V YN++IDG CK    REA  +  +M K G++P  +T+  L
Sbjct: 651 DKLHLKGLIPNVVTYNILIDGYCKSGSPREALDLRGKMLKEGISPSIITYSSL 703



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 130/514 (25%), Positives = 223/514 (43%), Gaps = 68/514 (13%)

Query: 10  VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSV 69
           V  A  +F +M   G  P++ S  +L+    + GE   A  V+D+MR   ++P+  T ++
Sbjct: 12  VKNALHVFDNMGKYGRKPSLRSCNSLLSNLVKRGESYSAVLVYDQMRRLDIVPDVFTCAI 71

Query: 70  LVRGVLRTRDVERA-------NVLMFKLWE-----------------------RMKEEED 99
           +V    +   VERA         L F+L                         +   E+ 
Sbjct: 72  MVNAYCKAGKVERAVEFVREMEKLGFELNAVSYNSLVDGYVSLGDIEGAKGVLKFMSEKG 131

Query: 100 LSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKS-VNEEFACGHMIDSLCRSGRNHGA 158
           +  N      L+   C++  V E  ++  +M +    V +E+A G +ID  C+ G+   A
Sbjct: 132 VMRNKVTLTLLIKGYCKQCKVEEAEKVLREMEKEDGVVVDEYAYGALIDGYCKVGKMGDA 191

Query: 159 SRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEG 218
            RV   M K GL  +L   NS+++G CK+G      +LL    +    P  ++Y  LV+G
Sbjct: 192 IRVRDEMLKVGLKMNLFVCNSLINGYCKNGQVHEGERLLMCMRKLDLKPDSYSYCTLVDG 251

Query: 219 LCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPD 278
            C +    KA                                    NV   ML+   +P 
Sbjct: 252 YCRDGLSSKA-----------------------------------FNVCDQMLRKGIEPT 276

Query: 279 VITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLL 338
           V+T NT++ G C+ G  ++AL++ + M+  +   P+ V + T++ GL  +G    AL L 
Sbjct: 277 VVTYNTLLKGLCRFGDYKDALRLWHLMLQ-RGVTPNEVGYCTLLDGLFKMGDFSRALTLW 335

Query: 339 YQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE 398
             ++  RG +  I  +N ++ GL ++  ++ AKE F  M  +G   D  TY  + DG C+
Sbjct: 336 DDILA-RGINKSIYAFNTMINGLCKMGEMDGAKETFKRMEELGCKPDGITYRTLSDGYCK 394

Query: 399 SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVC 458
              ++EA +  + +          +Y ++I GL  S KI + +  L E+   G++PN+V 
Sbjct: 395 VGNVEEAFKIKEKMEKEEIFPSIEMYNSLIVGLFTSKKISKLIDLLAEMDTRGLSPNVVT 454

Query: 459 YNVVIDGACKLSMKREAYQILREMRKNGLNPDAV 492
           Y  +I G C      +A+    EM   G  P+ +
Sbjct: 455 YGALIAGWCDQGRLDKAFSAYFEMIGKGFAPNVI 488



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 102/376 (27%), Positives = 182/376 (48%), Gaps = 30/376 (7%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           ++ +   L  +M +RG  PNVV+Y  LI G+C  G +D A+  + EM   G  PN +  S
Sbjct: 432 KISKLIDLLAEMDTRGLSPNVVTYGALIAGWCDQGRLDKAFSAYFEMIGKGFAPNVIICS 491

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVN------E 122
            +V  + R   ++ AN+L+ K+ +              F  ++D  C E + N      +
Sbjct: 492 KIVSSLYRLGRIDEANMLLQKMVD--------------FDLVLDHRCLEDFQNADIRKLD 537

Query: 123 VFRIAEDMPQGK---SVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
            ++IA+ + +     S+         +  LC+SG+ + A R    +     TP   +Y +
Sbjct: 538 CWKIADTLDESAIKFSLPNNVVYNIAMAGLCKSGKVNDARRFFLGLSHGSFTPDNFTYCT 597

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++HG    G    A+ L +E +  G +P+  TY  L+ GLC    L++AR++   +  K 
Sbjct: 598 LIHGFSAAGYVNEAFNLRDEMVNKGLVPNITTYNALLNGLCKSGYLDRARRLFDKLHLKG 657

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
            +      NI +   C   +P E L++   ML+    P +IT +++INGFCK   +EEA+
Sbjct: 658 LIPNVVTYNILIDGYCKSGSPREALDLRGKMLKEGISPSIITYSSLINGFCKQSDVEEAM 717

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           K+LN+M A       A TF+ ++ G +  G +++ ++ L+ +M     S GI ++  +  
Sbjct: 718 KLLNEMKASNVDQTIA-TFSKLVEGCIQHGDVKK-MSKLHNMMHMACPSAGITSHKQM-- 773

Query: 360 GLFRLRRVEEAKEVFN 375
               L  +  AKE+ +
Sbjct: 774 ---ELSELSNAKEMLD 786



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 105/427 (24%), Positives = 180/427 (42%), Gaps = 36/427 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D L  +     A  L+ D+ +RG   ++ ++ T+I+G C+ GEMD A + F  M   G 
Sbjct: 319 LDGLFKMGDFSRALTLWDDILARGINKSIYAFNTMINGLCKMGEMDGAKETFKRMEELGC 378

Query: 61  LPNSLTYSVLVRGVLRTRDVERA-------------------NVLMFKLWERMK------ 95
            P+ +TY  L  G  +  +VE A                   N L+  L+   K      
Sbjct: 379 KPDGITYRTLSDGYCKVGNVEEAFKIKEKMEKEEIFPSIEMYNSLIVGLFTSKKISKLID 438

Query: 96  -----EEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC 150
                +   LS N   +  L+   C +G +++ F    +M           C  ++ SL 
Sbjct: 439 LLAEMDTRGLSPNVVTYGALIAGWCDQGRLDKAFSAYFEMIGKGFAPNVIICSKIVSSLY 498

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE-GIQFGYLPSE 209
           R GR   A+ ++  M    L           +   +   C +    L+E  I+F  LP+ 
Sbjct: 499 RLGRIDEANMLLQKMVDFDLVLDHRCLEDFQNADIRKLDCWKIADTLDESAIKFS-LPNN 557

Query: 210 HTYKVLVEGLCGESDLEKARKV-LQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLV 268
             Y + + GLC    +  AR+  L         D    C + +          E  N+  
Sbjct: 558 VVYNIAMAGLCKSGKVNDARRFFLGLSHGSFTPDNFTYCTL-IHGFSAAGYVNEAFNLRD 616

Query: 269 FMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNV 328
            M+     P++ T N ++NG CK G ++ A ++  D +  K   P+ VT+  +I G    
Sbjct: 617 EMVNKGLVPNITTYNALLNGLCKSGYLDRARRLF-DKLHLKGLIPNVVTYNILIDGYCKS 675

Query: 329 GRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTT 388
           G  +EAL+L  + M + G SP I+TY++++ G  +   VEEA ++ N M    V     T
Sbjct: 676 GSPREALDLRGK-MLKEGISPSIITYSSLINGFCKQSDVEEAMKLLNEMKASNVDQTIAT 734

Query: 389 YAIVIDG 395
           ++ +++G
Sbjct: 735 FSKLVEG 741



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 111/220 (50%), Gaps = 3/220 (1%)

Query: 276 QPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEAL 335
           +P + + N++++   K G    A+ V + M       PD  T   ++      G+++ A+
Sbjct: 28  KPSLRSCNSLLSNLVKRGESYSAVLVYDQMRRLDI-VPDVFTCAIMVNAYCKAGKVERAV 86

Query: 336 NLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG 395
             + + M + G+    V+YN+++ G   L  +E AK V   M   GV+ +  T  ++I G
Sbjct: 87  EFVRE-MEKLGFELNAVSYNSLVDGYVSLGDIEGAKGVLKFMSEKGVMRNKVTLTLLIKG 145

Query: 396 LCESNQLDEAKRFWDDIVWPSNIH-DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTP 454
            C+  +++EA++   ++     +  D Y Y A+I G C+ GK+ +A+    E++  G+  
Sbjct: 146 YCKQCKVEEAEKVLREMEKEDGVVVDEYAYGALIDGYCKVGKMGDAIRVRDEMLKVGLKM 205

Query: 455 NIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
           N+   N +I+G CK     E  ++L  MRK  L PD+ ++
Sbjct: 206 NLFVCNSLINGYCKNGQVHEGERLLMCMRKLDLKPDSYSY 245



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 48/86 (55%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C      EA  L   M   G  P++++Y++LI+G+C+  +++ A K+ +EM+   V
Sbjct: 669 IDGYCKSGSPREALDLRGKMLKEGISPSIITYSSLINGFCKQSDVEEAMKLLNEMKASNV 728

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVL 86
                T+S LV G ++  DV++ + L
Sbjct: 729 DQTIATFSKLVEGCIQHGDVKKMSKL 754


>gi|4836917|gb|AAD30619.1|AC007153_11 similar to indole-3-acetate beta-glucosyltransferase [Arabidopsis
            thaliana]
          Length = 1184

 Score =  214 bits (546), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 132/491 (26%), Positives = 236/491 (48%), Gaps = 50/491 (10%)

Query: 4    LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            +C L R+ EAH L   M+ +G+ P+V+SY+T+++GYCR GE+D  +K+ + M+  G+ PN
Sbjct: 699  VCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPN 758

Query: 64   SLTYSVLVRGVL----RTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGY 119
            S  Y  ++ G+L    +  + E A   M +        + +  +   +  L+D  C+ G 
Sbjct: 759  SYIYGSII-GLLCRICKLAEAEEAFSEMIR--------QGILPDTVVYTTLIDGFCKRGD 809

Query: 120  VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
            +    +   +M       +      +I   C+ G    A ++ + M  +GL P  V++  
Sbjct: 810  IRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTE 869

Query: 180  IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
            +++G CK G    A+++    IQ G  P+  TY  L++GLC E DL+ A ++L  M    
Sbjct: 870  LINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMW--- 926

Query: 240  DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                                            +   QP++ T N+++NG CK G IEEA+
Sbjct: 927  --------------------------------KIGLQPNIFTYNSIVNGLCKSGNIEEAV 954

Query: 300  KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
            K++ +  A    A D VT+TT++      G + +A  +L +++  +G  P IVT+N ++ 
Sbjct: 955  KLVGEFEAAGLNA-DTVTYTTLMDAYCKSGEMDKAQEILKEML-GKGLQPTIVTFNVLMN 1012

Query: 360  GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
            G      +E+ +++ N ML  G+  ++TT+  ++   C  N L  A   + D+       
Sbjct: 1013 GFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGP 1072

Query: 420  DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
            D   Y  ++KG C++  + EA     E+   G + ++  Y+V+I G  K     EA ++ 
Sbjct: 1073 DGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVF 1132

Query: 480  REMRKNGLNPD 490
             +MR+ GL  D
Sbjct: 1133 DQMRREGLAAD 1143



 Score =  194 bits (494), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 119/430 (27%), Positives = 217/430 (50%), Gaps = 19/430 (4%)

Query: 4    LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            LC + ++ EA + F +M  +G +P+ V YTTLI G+C+ G++  A K F EM    + P+
Sbjct: 769  LCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPD 828

Query: 64   SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             LTY+ ++ G  +  D+  A  L  +++ +      L  ++  F  L++  C+ G++ + 
Sbjct: 829  VLTYTAIISGFCQIGDMVEAGKLFHEMFCK-----GLEPDSVTFTELINGYCKAGHMKDA 883

Query: 124  FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            FR+   M Q            +ID LC+ G    A+ +++ M K GL P++ +YNSIV+G
Sbjct: 884  FRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNG 943

Query: 184  LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            LCK G    A +L+ E    G      TY  L++  C   +++KA+++L+ ML K     
Sbjct: 944  LCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPT 1003

Query: 244  TRICNIYLRALCL---IKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                N+ +   CL   +++  +LLN   +ML     P+  T N+++  +C    ++ A  
Sbjct: 1004 IVTFNVLMNGFCLHGMLEDGEKLLN---WMLAKGIAPNATTFNSLVKQYCIRNNLKAATA 1060

Query: 301  VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
            +  DM + +   PD  T+  ++ G      ++EA   L+Q M  +G+S  + TY+ +++G
Sbjct: 1061 IYKDMCS-RGVGPDGKTYENLVKGHCKARNMKEAW-FLFQEMKGKGFSVSVSTYSVLIKG 1118

Query: 361  LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
              + ++  EA+EVF+ M   G+ AD   +    D   +  + D      D+I+      +
Sbjct: 1119 FLKRKKFLEAREVFDQMRREGLAADKEIFDFFSDTKYKGKRPDTIVDPIDEII------E 1172

Query: 421  NYVYAAMIKG 430
            NY+    ++G
Sbjct: 1173 NYLVDEQLRG 1182



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 123/497 (24%), Positives = 228/497 (45%), Gaps = 13/497 (2%)

Query: 10   VGEAHKLFFDM-----KSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
            V ++   FFD+     K  G  P V  +          G +  A +VF++M + G++ + 
Sbjct: 596  VTDSFVQFFDLLVYTYKDWGSDPRV--FDVFFQVLVDFGLLREARRVFEKMLNYGLVLSV 653

Query: 65   LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
             + +V +  + +        +++F    R   E  +  N A++  ++  +C+ G + E  
Sbjct: 654  DSCNVYLTRLSKDCYKTATAIIVF----REFPEVGVCWNVASYNIVIHFVCQLGRIKEAH 709

Query: 125  RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
             +   M       +  +   +++  CR G      +++ VM+++GL P+   Y SI+  L
Sbjct: 710  HLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLL 769

Query: 185  CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
            C+      A +   E I+ G LP    Y  L++G C   D+  A K    M S+      
Sbjct: 770  CRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDV 829

Query: 245  RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
                  +   C I +  E   +   M     +PD +T   +ING+CK G +++A +V N 
Sbjct: 830  LTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNH 889

Query: 305  MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
            M+    C+P+ VT+TT+I GL   G +  A  LL++ M + G  P I TYN+++ GL + 
Sbjct: 890  MIQAG-CSPNVVTYTTLIDGLCKEGDLDSANELLHE-MWKIGLQPNIFTYNSIVNGLCKS 947

Query: 365  RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY 424
              +EEA ++       G+ AD+ TY  ++D  C+S ++D+A+    +++          +
Sbjct: 948  GNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTF 1007

Query: 425  AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484
              ++ G C  G + +    L  ++  G+ PN   +N ++   C  +  + A  I ++M  
Sbjct: 1008 NVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCS 1067

Query: 485  NGLNPDAVTWRILDKLH 501
             G+ PD  T+  L K H
Sbjct: 1068 RGVGPDGKTYENLVKGH 1084



 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 103/365 (28%), Positives = 188/365 (51%), Gaps = 8/365 (2%)

Query: 145  MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
            +I  +C+ GR   A  ++ +M  +G TP ++SY+++V+G C+ G   + ++L+E   + G
Sbjct: 695  VIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKG 754

Query: 205  YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL 264
              P+ + Y  ++  LC    L +A +    M+ +  +  T +    +   C   +     
Sbjct: 755  LKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAAS 814

Query: 265  NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCA---PDAVTFTTI 321
                 M      PDV+T   +I+GFC++G + EA K+ ++M    FC    PD+VTFT +
Sbjct: 815  KFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEM----FCKGLEPDSVTFTEL 870

Query: 322  IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG 381
            I G    G +++A  + +  M Q G SP +VTY  ++ GL +   ++ A E+ + M  IG
Sbjct: 871  INGYCKAGHMKDAFRV-HNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIG 929

Query: 382  VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAV 441
            +  +  TY  +++GLC+S  ++EA +   +        D   Y  ++   C+SG++ +A 
Sbjct: 930  LQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQ 989

Query: 442  HFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLH 501
              L E++  G+ P IV +NV+++G C   M  +  ++L  M   G+ P+A T+  L K +
Sbjct: 990  EILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQY 1049

Query: 502  GNRGN 506
              R N
Sbjct: 1050 CIRNN 1054



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 125/455 (27%), Positives = 206/455 (45%), Gaps = 24/455 (5%)

Query: 69   VLVRGVLRTRDVERANVLMFKLWERMK----------------EEEDLSVNNAAFANLVD 112
            +++   + ++D++ A  L+   WER K                  +D   +   F     
Sbjct: 567  IVIHLAVASKDLKVAQSLISSFWERPKLNVTDSFVQFFDLLVYTYKDWGSDPRVFDVFFQ 626

Query: 113  SLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVY-VMRKRGLT 171
             L   G + E  R+ E M     V    +C   +  L +       + +V+    + G+ 
Sbjct: 627  VLVDFGLLREARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKTATAIIVFREFPEVGVC 686

Query: 172  PSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKV 231
             ++ SYN ++H +C+ G    A+ LL      GY P   +Y  +V G C   +L+K  K+
Sbjct: 687  WNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKL 746

Query: 232  LQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK 291
            ++ M  K     + I    +  LC I    E       M++    PD +   T+I+GFCK
Sbjct: 747  IEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCK 806

Query: 292  MGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGI 351
             G I  A K   +M   +   PD +T+T II G   +G + EA  L ++ M  +G  P  
Sbjct: 807  RGDIRAASKFFYEM-HSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHE-MFCKGLEPDS 864

Query: 352  VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDD 411
            VT+  ++ G  +   +++A  V N M+  G   +  TY  +IDGLC+   LD A     +
Sbjct: 865  VTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHE 924

Query: 412  IVWPSNIHDN-YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLS 470
            + W   +  N + Y +++ GLC+SG I EAV  + E   +G+  + V Y  ++D  CK  
Sbjct: 925  M-WKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSG 983

Query: 471  MKREAYQILREMRKNGLNPDAVTWRILDK---LHG 502
               +A +IL+EM   GL P  VT+ +L     LHG
Sbjct: 984  EMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHG 1018


>gi|359475765|ref|XP_002273555.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 935

 Score =  214 bits (546), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 139/500 (27%), Positives = 252/500 (50%), Gaps = 13/500 (2%)

Query: 7   LSRVG---EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LS+ G   EA     +++ RG  P+ V++   I GY +TG+M  A K FDEM   G++PN
Sbjct: 429 LSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPN 488

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           +  Y+VL+ G  +  ++  A + +F+    +    D+   +A     +  L + G V E 
Sbjct: 489 NPLYTVLINGHFKAGNLMEA-LSIFRHLHALGVLPDVQTCSA----FIHGLLKNGRVQEA 543

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            ++  ++ +   V + F    +I   C+ G    A  +   M  +G+ P++  YN++V G
Sbjct: 544 LKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDG 603

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LCK G   RA +L +   + G  P   TY  +++G C   ++ +A  +   M SK     
Sbjct: 604 LCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPH 663

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
           + + N  +   C   +  + +N+   MLQ +     ++ NT+I+G+CK  +I+EA ++  
Sbjct: 664 SFVYNALVHGCCKEGDMEKAMNLFREMLQ-KGFATTLSFNTLIDGYCKSCKIQEASQLFQ 722

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           +M+A K   PD VT+TT+I      G+++EA NLL++ M +R      VTY +++ G  +
Sbjct: 723 EMIA-KQIMPDHVTYTTVIDWHCKAGKMEEA-NLLFKEMQERNLIVDTVTYTSLMYGYNK 780

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
           L +  E   +F  M+  GV  D  TY +VI   C+ + L EA +  D++V    +    +
Sbjct: 781 LGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTI 840

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           +  +I  LC+   + EA   L E+ + G+ P++   + ++    +     EA ++   ++
Sbjct: 841 HDLLITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFEGVK 900

Query: 484 KNGLNPDAVTWRILDKLHGN 503
             GL PD  T  ++D ++GN
Sbjct: 901 SLGLVPDTTT--LIDLVNGN 918



 Score =  204 bits (519), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 136/537 (25%), Positives = 250/537 (46%), Gaps = 41/537 (7%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   ++ +A ++   M + G  PN  ++  LI GYCR   M  A ++ DEM    ++P+
Sbjct: 289 LCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPS 348

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           +++Y  ++ G+   +D+  AN    KL E+M     L  N   ++ L+     EG + E 
Sbjct: 349 AVSYGAMINGLCHCKDLSLAN----KLLEKMTFS-GLKPNVVVYSTLIMGYASEGRIEEA 403

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            R+ + M       + F    +I  L ++G+   AS  +  ++ RGL P  V++ + + G
Sbjct: 404 RRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILG 463

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
             K G    A +  +E +  G +P+   Y VL+ G     +L +A  + + + +   +  
Sbjct: 464 YSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPD 523

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK--- 300
            + C+ ++  L       E L V   + +    PDV T +++I+GFCK G +E+A +   
Sbjct: 524 VQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHD 583

Query: 301 ------------VLNDMVAG-------------------KFCAPDAVTFTTIIFGLLNVG 329
                       + N +V G                   K   PD+VT++T+I G     
Sbjct: 584 EMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSE 643

Query: 330 RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTY 389
            + EA +L ++ MP +G  P    YNA++ G  +   +E+A  +F  ML  G  A + ++
Sbjct: 644 NVAEAFSLFHE-MPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGF-ATTLSF 701

Query: 390 AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449
             +IDG C+S ++ EA + + +++    + D+  Y  +I   C++GK+ EA     E+ +
Sbjct: 702 NTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQE 761

Query: 450 SGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
             +  + V Y  ++ G  KL    E + +  +M   G+ PD VT+ ++   H    N
Sbjct: 762 RNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDN 818



 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 140/487 (28%), Positives = 237/487 (48%), Gaps = 17/487 (3%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M  +G VPN  +YT +  G CR   M+ A   F+EM+  G+ P+    S L+ G +R  D
Sbjct: 200 MGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGD 259

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDM-PQGKSVNE 138
           ++   VL  K    +     + +N   +  L+  LC+ G + +   I + M   G   N 
Sbjct: 260 IDE--VLRIK---DVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNS 314

Query: 139 EFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLE 198
              C  +I+  CR      A  ++  M KR L PS VSY ++++GLC       A +LLE
Sbjct: 315 RTFC-LLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLE 373

Query: 199 EGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIK 258
           +    G  P+   Y  L+ G   E  +E+AR++L  M S   V     C  Y   +  + 
Sbjct: 374 KMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGM-SCSGVAPDIFC--YNAIISCLS 430

Query: 259 NPTELLNVLVFMLQTQ---CQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA 315
              ++     ++L+ Q    +PD +T    I G+ K G++ EA K  ++M+      P+ 
Sbjct: 431 KAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGL-MPNN 489

Query: 316 VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN 375
             +T +I G    G + EAL++ ++ +   G  P + T +A + GL +  RV+EA +VF+
Sbjct: 490 PLYTVLINGHFKAGNLMEALSI-FRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFS 548

Query: 376 CMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG 435
            +   G+V D  TY+ +I G C+  ++++A    D++       + ++Y A++ GLC+SG
Sbjct: 549 ELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSG 608

Query: 436 KIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWR 495
            I  A      + + G+ P+ V Y+ +IDG CK     EA+ +  EM   G+ P +  + 
Sbjct: 609 DIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYN 668

Query: 496 ILDKLHG 502
            L  +HG
Sbjct: 669 AL--VHG 673



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 138/516 (26%), Positives = 232/516 (44%), Gaps = 59/516 (11%)

Query: 16  LFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVL 75
           LF+     G  P  V +  LI  Y R G +D A  VF   ++     +S+  S++     
Sbjct: 145 LFWFRNYGGSSP--VVFDILIDSYKRMGMLDEAANVFFVAKN-----DSILISLI----- 192

Query: 76  RTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKS 135
                 R N L      R   E+ L  N   +  +   LCR   +NE     E+M +   
Sbjct: 193 ------RCNSL------RSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGL 240

Query: 136 VNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQ 195
             +  AC  +ID   R G      R+  VM   G+  +L++YN ++HGLCK G   +A +
Sbjct: 241 KPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAE 300

Query: 196 LLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALC 255
           +L+  I  G  P+  T+ +L+EG C E ++ +A ++L  M  +  V         +  LC
Sbjct: 301 ILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLC 360

Query: 256 LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM---------- 305
             K+ +    +L  M  +  +P+V+  +T+I G+   GRIEEA ++L+ M          
Sbjct: 361 HCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIF 420

Query: 306 ------------------------VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQV 341
                                   + G+   PDAVTF   I G    G++ EA    +  
Sbjct: 421 CYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAK-YFDE 479

Query: 342 MPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ 401
           M   G  P    Y  ++ G F+   + EA  +F  +  +GV+ D  T +  I GL ++ +
Sbjct: 480 MLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGR 539

Query: 402 LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNV 461
           + EA + + ++     + D + Y+++I G C+ G++ +A     E+   G+ PNI  YN 
Sbjct: 540 VQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNA 599

Query: 462 VIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           ++DG CK    + A ++   M + GL PD+VT+  +
Sbjct: 600 LVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTM 635



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 108/405 (26%), Positives = 195/405 (48%), Gaps = 8/405 (1%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           RV EA K+F ++K +G VP+V +Y++LI G+C+ GE++ A+++ DEM   G+ PN   Y+
Sbjct: 539 RVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYN 598

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
            LV G+ ++ D++RA     KL++ M E+  L  ++  ++ ++D  C+   V E F +  
Sbjct: 599 ALVDGLCKSGDIQRAR----KLFDGMPEK-GLEPDSVTYSTMIDGYCKSENVAEAFSLFH 653

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
           +MP        F    ++   C+ G    A  +   M ++G   +L S+N+++ G CK  
Sbjct: 654 EMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTL-SFNTLIDGYCKSC 712

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
               A QL +E I    +P   TY  +++  C    +E+A  + + M  +  +  T    
Sbjct: 713 KIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYT 772

Query: 249 IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 308
             +     +   +E+  +   M+    +PD +T   VI   CK   + EA K L D V G
Sbjct: 773 SLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFK-LRDEVVG 831

Query: 309 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE 368
           K           +I  L     + EA  LL + M + G  P +   + ++R      +++
Sbjct: 832 KGMLTKGTIHDLLITALCKREDLTEASKLLDE-MGELGLKPSLAACSTLVRSFHEAGKMD 890

Query: 369 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413
           EA  VF  +  +G+V D+TT   +++G       ++A+     +V
Sbjct: 891 EATRVFEGVKSLGLVPDTTTLIDLVNGNLNDTDSEDARNLIKQLV 935



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 92/342 (26%), Positives = 174/342 (50%), Gaps = 7/342 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    +  A KLF  M  +G  P+ V+Y+T+I GYC++  +  A+ +F EM   GV
Sbjct: 601 VDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGV 660

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+S  Y+ LV G  +  D+E+A  L  ++ ++            +F  L+D  C+   +
Sbjct: 661 QPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKG------FATTLSFNTLIDGYCKSCKI 714

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E  ++ ++M   + + +      +ID  C++G+   A+ +   M++R L    V+Y S+
Sbjct: 715 QEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSL 774

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++G  K G     + L E+ +  G  P E TY +++   C E +L +A K+   ++ K  
Sbjct: 775 MYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGM 834

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           + +  I ++ + ALC  ++ TE   +L  M +   +P +   +T++  F + G+++EA +
Sbjct: 835 LTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATR 894

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVM 342
           V  + V      PD  T   ++ G LN    ++A NL+ Q++
Sbjct: 895 VF-EGVKSLGLVPDTTTLIDLVNGNLNDTDSEDARNLIKQLV 935



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 94/362 (25%), Positives = 166/362 (45%), Gaps = 19/362 (5%)

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
           +IDS  R G    A+ V +V +   +  SL+  NS+               + E+G+   
Sbjct: 162 LIDSYKRMGMLDEAANVFFVAKNDSILISLIRCNSL-------------RSMGEKGL--- 205

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL 264
            +P+ +TY ++  GLC    + +A+   + M           C+  +       +  E+L
Sbjct: 206 -VPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVL 264

Query: 265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 324
            +   M+      ++IT N +I+G CK G++E+A ++L  M+    C P++ TF  +I G
Sbjct: 265 RIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLG-CKPNSRTFCLLIEG 323

Query: 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 384
                 +  AL LL + M +R   P  V+Y A++ GL   + +  A ++   M   G+  
Sbjct: 324 YCREHNMGRALELLDE-MEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKP 382

Query: 385 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFL 444
           +   Y+ +I G     +++EA+R  D +       D + Y A+I  L ++GK+ EA  +L
Sbjct: 383 NVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYL 442

Query: 445 YELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNR 504
            E+   G+ P+ V +   I G  K     EA +   EM  +GL P+   + +L   H   
Sbjct: 443 LEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKA 502

Query: 505 GN 506
           GN
Sbjct: 503 GN 504



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 80/346 (23%), Positives = 134/346 (38%), Gaps = 97/346 (28%)

Query: 245 RICNIYLRALC------LIKNP---TELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 295
           ++CN  L  L       +I+ P   + +L+ ++F  +       +  + +I+ + +MG +
Sbjct: 113 QLCNSELFGLANGVLTQMIRTPYSSSSILDSVLFWFRNYGGSSPVVFDILIDSYKRMGML 172

Query: 296 EEALKVL----NDMV-------------AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLL 338
           +EA  V     ND +               K   P+  T+T I  GL    R+ EA  L 
Sbjct: 173 DEAANVFFVAKNDSILISLIRCNSLRSMGEKGLVPNTYTYTIITAGLCRAKRMNEA-KLT 231

Query: 339 YQVMPQRGYSP-----------------------------------GIVTYNAVLRGLFR 363
           ++ M + G  P                                    ++TYN ++ GL +
Sbjct: 232 FEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCK 291

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
             ++E+A E+   M+ +G   +S T+ ++I+G C  + +  A    D++   + +     
Sbjct: 292 FGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVS 351

Query: 424 YAAMIKGLCR-----------------------------------SGKIHEAVHFLYELV 448
           Y AMI GLC                                     G+I EA   L  + 
Sbjct: 352 YGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMS 411

Query: 449 DSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
            SGV P+I CYN +I    K     EA   L E++  GL PDAVT+
Sbjct: 412 CSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTF 457


>gi|449532420|ref|XP_004173179.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g05670, mitochondrial-like [Cucumis sativus]
          Length = 748

 Score =  214 bits (546), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 141/491 (28%), Positives = 230/491 (46%), Gaps = 46/491 (9%)

Query: 3   QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
            LC L +V EAH+L   M  R   P+VVSY+T+I GYC  GE+  A K+ D+M+  G+ P
Sbjct: 267 SLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCHLGELKKALKLMDDMQIKGLKP 326

Query: 63  NSLTYSVLVRGVLRT-RDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVN 121
           N  TY+ ++  + +  +  E   VL      R    + +  +N  +  L+    + G+V 
Sbjct: 327 NRYTYNSIILLLCKIGKSFEAEKVL------REMMSQKIIPDNVVYTTLIHGFFKLGHVR 380

Query: 122 EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
              +  ++M   K   +      +I    + G+      + + M  RGL P  V+Y +++
Sbjct: 381 TANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLI 440

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
              CK G  + A+ L  E +Q G  P+  TY  L++GLC   +L+ A ++L  M  K   
Sbjct: 441 DVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKG-- 498

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
                                             Q +V   N+++NG CK G IE+A+K+
Sbjct: 499 ---------------------------------LQLNVCIYNSMVNGICKAGNIEQAIKL 525

Query: 302 LNDM-VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           + +M VAG    PDA+T+TT+I     +G I +A  LL Q M  RG  P +VT+N ++ G
Sbjct: 526 MKEMEVAG--IDPDAITYTTVIDAYCRLGDIDKAHKLL-QEMLDRGLQPTVVTFNVLMNG 582

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
              L  +E+   +   ML  G+V D+ TY  ++   C  N ++   + +  +       D
Sbjct: 583 FCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPD 642

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
           +  Y  +IKG C++  + EA     E+++ G  P +  YN +I    K     EA ++  
Sbjct: 643 SNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKRKFXEARELFE 702

Query: 481 EMRKNGLNPDA 491
           EMR +GL  D 
Sbjct: 703 EMRGHGLVADG 713



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 119/391 (30%), Positives = 200/391 (51%), Gaps = 7/391 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC + +  EA K+  +M S+  +P+ V YTTLIHG+ + G +  A K FDEM    + P+
Sbjct: 338 LCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPD 397

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY+ L++G  +   V     L  ++  R      L  +   +  L+D  C+ G +   
Sbjct: 398 YITYTTLIQGFGQGGKVIEPQNLFHEMISR-----GLKPDEVTYTTLIDVYCKAGEMVNA 452

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           F +  +M Q          G +ID LC+ G    A+ ++  MRK+GL  ++  YNS+V+G
Sbjct: 453 FSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNG 512

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           +CK G   +A +L++E    G  P   TY  +++  C   D++KA K+LQ ML +     
Sbjct: 513 ICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPT 572

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               N+ +   C++    +   +L +ML+    PD IT NT++   C    +    K+  
Sbjct: 573 VVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYK 632

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            M   +  APD+ T+  +I G      ++EA   LY+ M ++GY P + +YNA+++  ++
Sbjct: 633 RM-RNQGVAPDSNTYNILIKGHCKARNLKEAW-FLYKEMIEKGYVPTVTSYNALIKRFYK 690

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVID 394
            R+  EA+E+F  M G G+VAD   Y   +D
Sbjct: 691 KRKFXEARELFEEMRGHGLVADGEIYNFFVD 721



 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 128/501 (25%), Positives = 225/501 (44%), Gaps = 46/501 (9%)

Query: 6   GLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSL 65
           G+      H+L +  K  G  PN +++          G +  A K+ D++   G++    
Sbjct: 169 GVKMTQFTHRLIYTYKYWG--PNPIAFDIFFQVLVEIGHLSEARKLLDKLLSYGLVVTVD 226

Query: 66  TYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFR 125
           + +  +  +    +     + +F        E  +S N  ++  ++ SLCR G V E  R
Sbjct: 227 SCNAFLSRIANNSEGIEMAIKVFC-------EYGISWNTTSYNIIIYSLCRLGKVKEAHR 279

Query: 126 IAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLC 185
           +   M    S  +  +   +ID  C  G    A +++  M+ +GL P+  +YNSI+  LC
Sbjct: 280 LLMQMDFRSSTPDVVSYSTVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLC 339

Query: 186 KHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTR 245
           K G    A ++L E +    +P    Y  L+ G      +  A K    MLSKK      
Sbjct: 340 KIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKK------ 393

Query: 246 ICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM 305
                                          PD IT  T+I GF + G++ E   + ++M
Sbjct: 394 -----------------------------ISPDYITYTTLIQGFGQGGKVIEPQNLFHEM 424

Query: 306 VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLR 365
           ++ +   PD VT+TT+I      G +  A +L +  M Q G +P IVTY A++ GL +  
Sbjct: 425 IS-RGLKPDEVTYTTLIDVYCKAGEMVNAFSL-HNEMVQMGMTPNIVTYGALIDGLCKHG 482

Query: 366 RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYA 425
            ++ A E+ + M   G+  +   Y  +++G+C++  +++A +   ++       D   Y 
Sbjct: 483 ELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYT 542

Query: 426 AMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN 485
            +I   CR G I +A   L E++D G+ P +V +NV+++G C L M  +  ++L  M + 
Sbjct: 543 TVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEK 602

Query: 486 GLNPDAVTWRILDKLHGNRGN 506
           G+ PDA+T+  L K H  R +
Sbjct: 603 GIVPDAITYNTLMKQHCIRNS 623



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 80/339 (23%), Positives = 146/339 (43%), Gaps = 45/339 (13%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C    +  A  L  +M   G  PN+V+Y  LI G C+ GE+D A ++ DEMR  G+
Sbjct: 440 IDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGL 499

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAA--FANLVDSLCREG 118
             N   Y+ +V G+ +  ++E+A  L       MKE E   ++  A  +  ++D+ CR G
Sbjct: 500 QLNVCIYNSMVNGICKAGNIEQAIKL-------MKEMEVAGIDPDAITYTTVIDAYCRLG 552

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
            +++  ++ ++M                                     RGL P++V++N
Sbjct: 553 DIDKAHKLLQEMLD-----------------------------------RGLQPTVVTFN 577

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
            +++G C  G      +LL   ++ G +P   TY  L++  C  + +    K+ + M ++
Sbjct: 578 VLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQ 637

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
                +   NI ++  C  +N  E   +   M++    P V + N +I  F K  +  EA
Sbjct: 638 GVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKRKFXEA 697

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNL 337
            ++  +M  G     D   +   +      G ++  LNL
Sbjct: 698 RELFEEM-RGHGLVADGEIYNFFVDMCYEEGDVEITLNL 735


>gi|125527955|gb|EAY76069.1| hypothetical protein OsI_03997 [Oryza sativa Indica Group]
          Length = 684

 Score =  214 bits (545), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 136/491 (27%), Positives = 238/491 (48%), Gaps = 13/491 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R  +A ++    +  G   +V +Y TL+ GYCR G++D A ++   M    V P+
Sbjct: 88  LCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDAARRLIASM---PVAPD 144

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           + TY+ ++RG+     V  A  L+  +  R  +   ++     +  L++++C+     + 
Sbjct: 145 AYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVT-----YTVLLEAVCKSTGFGQA 199

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             + ++M              +I+ +CR GR   A   +  +   G  P  VSY +++ G
Sbjct: 200 MEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKG 259

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LC         +L  E ++   +P+E T+ +LV   C    +E+A +VL+ M        
Sbjct: 260 LCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAAN 319

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
           T +CNI +  +C      +    L  M    C PD I+  TV+ G C+  R E+A ++L 
Sbjct: 320 TTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLK 379

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           +MV  K C P+ VTF T I  L   G I++A  L+ Q M + G    IVTYNA++ G   
Sbjct: 380 EMVR-KNCPPNEVTFNTFICILCQKGLIEQATMLIEQ-MSEHGCEVNIVTYNALVNGFCV 437

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
             RV+ A E+F  M       ++ TY  ++ GLC + +LD A     +++      +   
Sbjct: 438 QGRVDSALELFYSM---PCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVT 494

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           +  ++   C+ G + EA+  + ++++ G TPN++ YN ++DG        EA ++L  + 
Sbjct: 495 FNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITNDCNSEEALELLHGLV 554

Query: 484 KNGLNPDAVTW 494
            NG++PD VT+
Sbjct: 555 SNGVSPDIVTY 565



 Score =  206 bits (523), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 141/508 (27%), Positives = 242/508 (47%), Gaps = 18/508 (3%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   RVGEA  L  DM  RG  P+VV+YT L+   C++     A +V DEMR  G  PN
Sbjct: 155 LCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPN 214

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY+V++ G+ R   V+ A   + +L     + + +S     +  ++  LC      +V
Sbjct: 215 IVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVS-----YTTVLKGLCAAKRWEDV 269

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             +  +M +   +  E     ++   CR G    A +V+  M   G   +    N +++ 
Sbjct: 270 EELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINT 329

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           +CK G    A+Q L     +G  P   +Y  +++GLC     E A+++L+ M+ K     
Sbjct: 330 ICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPN 389

Query: 244 TRICNIYLRALC---LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
               N ++  LC   LI+  T L+     M +  C+ +++T N ++NGFC  GR++ AL+
Sbjct: 390 EVTFNTFICILCQKGLIEQATMLIEQ---MSEHGCEVNIVTYNALVNGFCVQGRVDSALE 446

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +   M     C P+ +T+TT++ GL N  R+  A  LL +++ Q+  +P +VT+N ++  
Sbjct: 447 LFYSMP----CKPNTITYTTLLTGLCNAERLDAAAELLAEML-QKDCAPNVVTFNVLVSF 501

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
             +   ++EA E+   M+  G   +  TY  ++DG+      +EA      +V      D
Sbjct: 502 FCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITNDCNSEEALELLHGLVSNGVSPD 561

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              Y+++I  L R  ++ EA+   + + D G+ P  V YN ++   CK      A     
Sbjct: 562 IVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFA 621

Query: 481 EMRKNGLNPDAVTWRILDKLHGNRGNDF 508
            M  NG  P+ +T+  L  + G    DF
Sbjct: 622 YMVSNGCMPNELTYITL--IEGLANEDF 647



 Score =  198 bits (503), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 128/497 (25%), Positives = 243/497 (48%), Gaps = 12/497 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ +C  +  G+A ++  +M+++G  PN+V+Y  +I+G CR G +D A +  + +   G 
Sbjct: 187 LEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGF 246

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P++++Y+ +++G+   +  E    L  ++ E+     +   N   F  LV   CR G V
Sbjct: 247 QPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEK-----NCMPNEVTFDMLVRFFCRGGMV 301

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
               ++ E M           C  +I+++C+ GR   A + +  M   G +P  +SY ++
Sbjct: 302 ERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTV 361

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GLC+      A +LL+E ++    P+E T+   +  LC +  +E+A  +++ M     
Sbjct: 362 LKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGC 421

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                  N  +   C+       L +   M    C+P+ IT  T++ G C   R++ A +
Sbjct: 422 EVNIVTYNALVNGFCVQGRVDSALELFYSM---PCKPNTITYTTLLTGLCNAERLDAAAE 478

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +L +M+  K CAP+ VTF  ++      G + EA+ L+ Q+M + G +P ++TYN +L G
Sbjct: 479 LLAEMLQ-KDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMM-EHGCTPNLITYNTLLDG 536

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           +      EEA E+ + ++  GV  D  TY+ +I  L   ++++EA + +  +        
Sbjct: 537 ITNDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPK 596

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
             +Y  ++  LC+      A+ F   +V +G  PN + Y  +I+G       +E   +LR
Sbjct: 597 AVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEGLANEDFLKETRDLLR 656

Query: 481 EMRKNG-LNPDAV-TWR 495
           E+   G LN + +  WR
Sbjct: 657 ELCSRGVLNKNLLEEWR 673



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 84/342 (24%), Positives = 152/342 (44%), Gaps = 40/342 (11%)

Query: 158 ASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVE 217
           A+R+V     RG  P +     ++  LC+ G    A ++L    + G       Y  LV 
Sbjct: 62  AARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVA 121

Query: 218 GLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQP 277
           G C    L+ AR+++  M                                         P
Sbjct: 122 GYCRYGQLDAARRLIASM--------------------------------------PVAP 143

Query: 278 DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNL 337
           D  T   +I G C  GR+ EAL +L+DM+  + C P  VT+T ++  +       +A+ +
Sbjct: 144 DAYTYTPIIRGLCDRGRVGEALSLLDDML-HRGCQPSVVTYTVLLEAVCKSTGFGQAMEV 202

Query: 338 LYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLC 397
           L + M  +G +P IVTYN ++ G+ R  RV++A+E  N +   G   D+ +Y  V+ GLC
Sbjct: 203 LDE-MRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLC 261

Query: 398 ESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIV 457
            + + ++ +  + +++  + + +   +  +++  CR G +  A+  L ++   G   N  
Sbjct: 262 AAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTT 321

Query: 458 CYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
             N+VI+  CK     +A+Q L  M   G +PD +++  + K
Sbjct: 322 LCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLK 363


>gi|15222409|ref|NP_176529.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75205330|sp|Q9SH26.1|PP102_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63400
 gi|6633845|gb|AAF19704.1|AC008047_11 F2K11.22 [Arabidopsis thaliana]
 gi|332195974|gb|AEE34095.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 577

 Score =  214 bits (545), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 133/490 (27%), Positives = 238/490 (48%), Gaps = 42/490 (8%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C  S++  A  L   M   G+ P++V+ ++L++GYC    +  A  + D+M   G  P+
Sbjct: 130 FCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPD 189

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           ++T++ L+ G+        A  L+ ++ +R         N   +  +V+ LC+ G ++  
Sbjct: 190 TITFTTLIHGLFLHNKASEAVALVDRMVQR-----GCQPNLVTYGVVVNGLCKRGDIDLA 244

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           F +   M   K          +IDSLC+      A  +   M  +G+ P++++Y+S++  
Sbjct: 245 FNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISC 304

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LC +     A +LL + I+    P+  T+  L++    E  L +A K+   M+ K+ +D 
Sbjct: 305 LCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMI-KRSID- 362

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                                            PD+ T +++INGFC   R++EA  +  
Sbjct: 363 ---------------------------------PDIFTYSSLINGFCMHDRLDEAKHMFE 389

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            M++ K C P+ VT+ T+I G     RI E + L ++ M QRG     VTY  ++ G F+
Sbjct: 390 LMIS-KDCFPNVVTYNTLINGFCKAKRIDEGVEL-FREMSQRGLVGNTVTYTTLIHGFFQ 447

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
            R  + A+ VF  M+  GV  +  TY  ++DGLC++ +L++A   ++ +         Y 
Sbjct: 448 ARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYT 507

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y  MI+G+C++GK+ +       L   GV P+++ YN +I G C+  +K EA  + R+MR
Sbjct: 508 YNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADALFRKMR 567

Query: 484 KNGLNPDAVT 493
           ++G  PD+ T
Sbjct: 568 EDGPLPDSGT 577



 Score =  174 bits (441), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 114/466 (24%), Positives = 220/466 (47%), Gaps = 7/466 (1%)

Query: 32  YTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLW 91
           Y  ++     + ++D A  +F  M     LP+   ++ L+  + + +  +    L+  L 
Sbjct: 53  YREILRNGLHSMKLDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFD----LVISLG 108

Query: 92  ERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCR 151
           E+M +   +S N   +  L++  CR   ++    +   M +            +++  C 
Sbjct: 109 EKM-QRLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCH 167

Query: 152 SGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHT 211
             R   A  +V  M + G  P  +++ +++HGL  H     A  L++  +Q G  P+  T
Sbjct: 168 GKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVT 227

Query: 212 YKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFML 271
           Y V+V GLC   D++ A  +L  M + K      I +  + +LC  ++  + LN+   M 
Sbjct: 228 YGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEME 287

Query: 272 QTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRI 331
               +P+VIT +++I+  C   R  +A ++L+DM+  K   P+ VTF  +I   +  G++
Sbjct: 288 NKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKI-NPNVVTFNALIDAFVKEGKL 346

Query: 332 QEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAI 391
            EA   LY  M +R   P I TY++++ G     R++EAK +F  M+      +  TY  
Sbjct: 347 VEA-EKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNT 405

Query: 392 VIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 451
           +I+G C++ ++DE    + ++     + +   Y  +I G  ++     A     ++V  G
Sbjct: 406 LINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDG 465

Query: 452 VTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           V PNI+ YN ++DG CK     +A  +   ++++ + P   T+ I+
Sbjct: 466 VHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIM 511



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 116/490 (23%), Positives = 237/490 (48%), Gaps = 9/490 (1%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           ++ +A  LF  M     +P++  +  L+    +  + D+   + ++M+  G+  N  TY+
Sbjct: 65  KLDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYN 124

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
           +L+    R   +  A  L+ K+   MK   + S+     ++L++  C    +++   + +
Sbjct: 125 ILINCFCRRSQISLALALLGKM---MKLGYEPSI--VTLSSLLNGYCHGKRISDAVALVD 179

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
            M +     +      +I  L    +   A  +V  M +RG  P+LV+Y  +V+GLCK G
Sbjct: 180 QMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRG 239

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
               A+ LL +        +   Y  +++ LC     + A  +   M +K         +
Sbjct: 240 DIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYS 299

Query: 249 IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 308
             +  LC  +  ++   +L  M++ +  P+V+T N +I+ F K G++ EA K+ ++M+  
Sbjct: 300 SLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIK- 358

Query: 309 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE 368
           +   PD  T++++I G     R+ EA ++ +++M  +   P +VTYN ++ G  + +R++
Sbjct: 359 RSIDPDIFTYSSLINGFCMHDRLDEAKHM-FELMISKDCFPNVVTYNTLINGFCKAKRID 417

Query: 369 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV-YAAM 427
           E  E+F  M   G+V ++ TY  +I G  ++   D A+  +  +V    +H N + Y  +
Sbjct: 418 EGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMV-SDGVHPNIMTYNTL 476

Query: 428 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
           + GLC++GK+ +A+     L  S + P I  YN++I+G CK     + + +   +   G+
Sbjct: 477 LDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGV 536

Query: 488 NPDAVTWRIL 497
            PD + +  +
Sbjct: 537 KPDVIIYNTM 546



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 96/338 (28%), Positives = 172/338 (50%), Gaps = 4/338 (1%)

Query: 165 MRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESD 224
           M++ G++ +L +YN +++  C+      A  LL + ++ GY PS  T   L+ G C    
Sbjct: 111 MQRLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKR 170

Query: 225 LEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNT 284
           +  A  ++  M+       T      +  L L    +E + ++  M+Q  CQP+++T   
Sbjct: 171 ISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGV 230

Query: 285 VINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ 344
           V+NG CK G I+ A  +LN M A K  A + V ++T+I  L       +ALNL  + M  
Sbjct: 231 VVNGLCKRGDIDLAFNLLNKMEAAKIEA-NVVIYSTVIDSLCKYRHEDDALNLFTE-MEN 288

Query: 345 RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 404
           +G  P ++TY++++  L    R  +A  + + M+   +  +  T+  +ID   +  +L E
Sbjct: 289 KGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVE 348

Query: 405 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
           A++ +D+++  S   D + Y+++I G C   ++ EA H    ++     PN+V YN +I+
Sbjct: 349 AEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIN 408

Query: 465 GACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
           G CK     E  ++ REM + GL  + VT+  L  +HG
Sbjct: 409 GFCKAKRIDEGVELFREMSQRGLVGNTVTYTTL--IHG 444



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 142/305 (46%), Gaps = 5/305 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC      +A  LF +M+++G  PNV++Y++LI   C       A ++  +M    +
Sbjct: 267 IDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKI 326

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +T++ L+   ++   +  A  L  ++ +R  + +  +     +++L++  C    +
Sbjct: 327 NPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFT-----YSSLINGFCMHDRL 381

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E   + E M              +I+  C++ R      +   M +RGL  + V+Y ++
Sbjct: 382 DEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTL 441

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +HG  +   C  A  + ++ +  G  P+  TY  L++GLC    LEKA  V +++   K 
Sbjct: 442 IHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKM 501

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                  NI +  +C      +  ++   +     +PDVI  NT+I+GFC+ G  EEA  
Sbjct: 502 EPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADA 561

Query: 301 VLNDM 305
           +   M
Sbjct: 562 LFRKM 566



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 38/66 (57%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ +C   +V +   LF  +  +G  P+V+ Y T+I G+CR G  + A  +F +MR  G 
Sbjct: 512 IEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADALFRKMREDGP 571

Query: 61  LPNSLT 66
           LP+S T
Sbjct: 572 LPDSGT 577



 Score = 45.8 bits (107), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 23/92 (25%), Positives = 47/92 (51%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   ++ +A  +F  ++     P + +Y  +I G C+ G+++  + +F  +   GV
Sbjct: 477 LDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGV 536

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWE 92
            P+ + Y+ ++ G  R    E A+ L  K+ E
Sbjct: 537 KPDVIIYNTMISGFCRKGLKEEADALFRKMRE 568


>gi|357499975|ref|XP_003620276.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495291|gb|AES76494.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 590

 Score =  214 bits (544), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 134/472 (28%), Positives = 239/472 (50%), Gaps = 15/472 (3%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M+ RG  PN+V+   LI+ +C+ G +  A+ VF ++   G +P+++T++ L +G+     
Sbjct: 111 MEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLSKGLCLKGQ 170

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQ---GKSV 136
           +++A +   K+            +  ++  L+  LC+ G      R A D+ Q   G  V
Sbjct: 171 IQQAFLFHDKVVAL-----GFHFDQISYGTLIHGLCKVGET----RAALDLLQRVDGNLV 221

Query: 137 NEEFAC-GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQ 195
                    +IDS+C+    + A  +   M  +G++P +V+Y++++ G C  G    A  
Sbjct: 222 QPNVVMYNTIIDSMCKVKLVNEAFDLFSEMVSKGISPDVVTYSALISGFCILGKLKDAID 281

Query: 196 LLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALC 255
           L  + I     P  +T+ +LV   C +  +++ + V   M+ +         N  +   C
Sbjct: 282 LFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYC 341

Query: 256 LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA 315
           L+K   +  ++   M Q    PD+ + + +INGFCK+ + +EA+ +  +M   K   PD 
Sbjct: 342 LVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEM-HRKNIIPDV 400

Query: 316 VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN 375
           VT++++I GL   GRI  AL L+ Q M  RG  P I TYN++L  L +  +V++A  +  
Sbjct: 401 VTYSSLIDGLSKSGRISYALQLVDQ-MHDRGVPPNICTYNSILDALCKTHQVDKAIALLT 459

Query: 376 CMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG 435
                G   D +TY+I+I GLC+S +L++A++ ++D++      D Y Y  MI+G C  G
Sbjct: 460 KFKDKGFQPDISTYSILIKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTIMIQGFCVEG 519

Query: 436 KIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
             +EA+  L ++ D+G  P+   Y ++I    K      A ++LREM   GL
Sbjct: 520 LFNEALALLSKMEDNGCIPDAKTYEIIILSLFKKDENDMAEKLLREMIARGL 571



 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 121/472 (25%), Positives = 220/472 (46%), Gaps = 18/472 (3%)

Query: 39  YCRTGEMDVAYKVFDEMR-----HCGVLP------NSLTYSVLVRGVLRTRDVERANVLM 87
           YC   +     K F   +     H   +P      N ++YS          DV+ A  L 
Sbjct: 14  YCVVPDSHFVPKKFQSFQFLKNTHFNFIPYSSSKINFISYSSTSTTFHSNNDVDDAVSLF 73

Query: 88  FKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMID 147
            +L  R         N      ++ SL +  + + V  +++ M           C  +I+
Sbjct: 74  NRLLRRNTTPPAFEFNK-----ILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNILIN 128

Query: 148 SLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLP 207
             C+ G    A  V   + K G  P  +++ ++  GLC  G   +A+   ++ +  G+  
Sbjct: 129 CFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLSKGLCLKGQIQQAFLFHDKVVALGFHF 188

Query: 208 SEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVL 267
            + +Y  L+ GLC   +   A  +LQ +          + N  + ++C +K   E  ++ 
Sbjct: 189 DQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLF 248

Query: 268 VFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLN 327
             M+     PDV+T + +I+GFC +G++++A+ + N M+      PD  TF  ++     
Sbjct: 249 SEMVSKGISPDVVTYSALISGFCILGKLKDAIDLFNKMILENI-KPDVYTFNILVNAFCK 307

Query: 328 VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADST 387
            G+++E    ++ +M ++G  P  VTYN+++ G   ++ V +AK +FN M   GV  D  
Sbjct: 308 DGKMKEG-KTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQ 366

Query: 388 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYEL 447
           +Y+I+I+G C+  + DEA   + ++   + I D   Y+++I GL +SG+I  A+  + ++
Sbjct: 367 SYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQM 426

Query: 448 VDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
            D GV PNI  YN ++D  CK     +A  +L + +  G  PD  T+ IL K
Sbjct: 427 HDRGVPPNICTYNSILDALCKTHQVDKAIALLTKFKDKGFQPDISTYSILIK 478



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 154/342 (45%), Gaps = 40/342 (11%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHG---------------------- 38
           +D +C +  V EA  LF +M S+G  P+VV+Y+ LI G                      
Sbjct: 232 IDSMCKVKLVNEAFDLFSEMVSKGISPDVVTYSALISGFCILGKLKDAIDLFNKMILENI 291

Query: 39  -------------YCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANV 85
                        +C+ G+M     VFD M   G+ PN +TY+ L+ G    ++V +A  
Sbjct: 292 KPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKS 351

Query: 86  LMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHM 145
           + F    +     D+     +++ +++  C+    +E   + ++M +   + +      +
Sbjct: 352 I-FNTMAQGGVNPDIQ----SYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSL 406

Query: 146 IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY 205
           ID L +SGR   A ++V  M  RG+ P++ +YNSI+  LCK     +A  LL +    G+
Sbjct: 407 IDGLSKSGRISYALQLVDQMHDRGVPPNICTYNSILDALCKTHQVDKAIALLTKFKDKGF 466

Query: 206 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 265
            P   TY +L++GLC    LE ARKV + +L K          I ++  C+     E L 
Sbjct: 467 QPDISTYSILIKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTIMIQGFCVEGLFNEALA 526

Query: 266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA 307
           +L  M    C PD  T   +I    K    + A K+L +M+A
Sbjct: 527 LLSKMEDNGCIPDAKTYEIIILSLFKKDENDMAEKLLREMIA 568



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 117/238 (49%), Gaps = 5/238 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           MD  C +  V +A  +F  M   G  P++ SY+ +I+G+C+  + D A  +F EM    +
Sbjct: 337 MDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNI 396

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P+ +TYS L+ G+ ++  +  A  L+ ++ +R      +  N   + +++D+LC+   V
Sbjct: 397 IPDVVTYSSLIDGLSKSGRISYALQLVDQMHDR-----GVPPNICTYNSILDALCKTHQV 451

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           ++   +           +      +I  LC+SG+   A +V   +  +G    + +Y  +
Sbjct: 452 DKAIALLTKFKDKGFQPDISTYSILIKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTIM 511

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
           + G C  G    A  LL +    G +P   TY++++  L  + + + A K+L+ M+++
Sbjct: 512 IQGFCVEGLFNEALALLSKMEDNGCIPDAKTYEIIILSLFKKDENDMAEKLLREMIAR 569



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 103/207 (49%), Gaps = 6/207 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C + +  EA  LF +M  +  +P+VV+Y++LI G  ++G +  A ++ D+M   GV
Sbjct: 372 INGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGV 431

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN  TY+ ++  + +T  V++A  L+ K  ++   + D+S     ++ L+  LC+ G +
Sbjct: 432 PPNICTYNSILDALCKTHQVDKAIALLTKFKDK-GFQPDIS----TYSILIKGLCQSGKL 486

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +  ++ ED+       + +A   MI   C  G  + A  ++  M   G  P   +Y  I
Sbjct: 487 EDARKVFEDLLVKGYNLDVYAYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKTYEII 546

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLP 207
           +  L K      A +LL E I  G LP
Sbjct: 547 ILSLFKKDENDMAEKLLREMIARG-LP 572


>gi|302795346|ref|XP_002979436.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
 gi|300152684|gb|EFJ19325.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
          Length = 500

 Score =  214 bits (544), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 126/449 (28%), Positives = 227/449 (50%), Gaps = 45/449 (10%)

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           +TY+ L++G+ + + +E+A + + K+  +         +   +  ++ +LC E  ++E  
Sbjct: 12  VTYTSLIQGLCKVKRLEQALIFLGKMVSK-----GFHPDVYTYTAVIHALCVENRLHEAR 66

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
           +  E+M              +ID LC+ GR   A  ++  MRK+ + P+ V+YNS++ GL
Sbjct: 67  KFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCV-PTAVTYNSLISGL 125

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
           CK      AY LLEE +  G +P   TY  L+ G C     + A +V + ++++      
Sbjct: 126 CKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARG----- 180

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
                                          +PDV+T + +I+G CK GR++EA+ +   
Sbjct: 181 ------------------------------FRPDVVTYSCLIDGLCKEGRLKEAIDLFGR 210

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
           M+    C P+ VT+ ++I G   +G++ EA+NLL + M + G SP +VTY  ++ G  +L
Sbjct: 211 MIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLL-ERMAETGSSPDVVTYTTLMNGFCKL 269

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY 424
            R+++A ++ N M   G+  D  T+  ++DGLC  N+L +A     ++   S     Y Y
Sbjct: 270 ARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTY 329

Query: 425 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484
             ++ G CR+ ++ EA  F+ E +D    PN+V +N++I G CK++   EA +++ E R+
Sbjct: 330 NTILDGYCRANQLEEARKFMLEEMD--CPPNVVSFNIMIRGLCKVNRSSEAMELVEEARR 387

Query: 485 NGLNPDAVTW-RILDKLHGNRGNDFGLRI 512
              NPD V +  ++D L   +  D   R+
Sbjct: 388 RRCNPDVVMYTTVIDGLCREKKVDEACRV 416



 Score =  210 bits (534), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 130/486 (26%), Positives = 237/486 (48%), Gaps = 16/486 (3%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC + R+ +A      M S+G  P+V +YT +IH  C    +  A K  +EM +  + PN
Sbjct: 21  LCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEMANRNLTPN 80

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY+VL+ G+ +   V+ A  L+ K+ ++             + +L+  LC+    +E 
Sbjct: 81  VVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVP------TAVTYNSLISGLCKAERASEA 134

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           + + E+M     + + F    +I   C+S ++  A RV   +  RG  P +V+Y+ ++ G
Sbjct: 135 YDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDG 194

Query: 184 LCKHGGCMRAYQLLEEGIQFGY-LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           LCK G    A  L    I+ G  +P+  TY  L+ G C    +++A  +L+ M       
Sbjct: 195 LCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSP 254

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
                   +   C +    +  ++L  M +    PDV+T  ++++G C+  R+ +A+ +L
Sbjct: 255 DVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHIL 314

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
            +M   K C+P   T+ TI+ G     +++EA   + + M      P +V++N ++RGL 
Sbjct: 315 GEM-RRKSCSPTVYTYNTILDGYCRANQLEEARKFMLEEM---DCPPNVVSFNIMIRGLC 370

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV-WPSNIHDN 421
           ++ R  EA E+           D   Y  VIDGLC   ++DEA R +  ++  P  + ++
Sbjct: 371 KVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNS 430

Query: 422 YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
             Y+ ++ GLC +G +  A  +    ++ G  PNI  YN++ID   K +   +A ++L +
Sbjct: 431 ITYSTLVTGLCNAGMLDRARGY----IEKGCVPNIGTYNLLIDAFRKANRDEDARELLDD 486

Query: 482 MRKNGL 487
           M + G 
Sbjct: 487 MVQRGF 492



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 113/383 (29%), Positives = 204/383 (53%), Gaps = 15/383 (3%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R  EA+ L  +M   G +P++ +YTTLI G+C++ + D A +VF+++   G  P+
Sbjct: 125 LCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPD 184

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TYS L+ G+ +   ++ A      L+ RM +      N   + +L+   CR G ++E 
Sbjct: 185 VVTYSCLIDGLCKEGRLKEA----IDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEA 240

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             + E M +  S  +      +++  C+  R   A  ++  M ++GLTP +V++ S++ G
Sbjct: 241 MNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDG 300

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LC+      A  +L E  +    P+ +TY  +++G C  + LE+ARK   FML + D   
Sbjct: 301 LCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARK---FMLEEMDCPP 357

Query: 244 TRIC-NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
             +  NI +R LC +   +E + ++    + +C PDV+   TVI+G C+  +++EA +V 
Sbjct: 358 NVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVY 417

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
             M+    C P+++T++T++ GL N G +  A   +     ++G  P I TYN ++    
Sbjct: 418 RKMLEEPGCLPNSITYSTLVTGLCNAGMLDRARGYI-----EKGCVPNIGTYNLLIDAFR 472

Query: 363 RLRRVEEAKEVFNCML--GIGVV 383
           +  R E+A+E+ + M+  G GVV
Sbjct: 473 KANRDEDARELLDDMVQRGFGVV 495



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 80/259 (30%), Positives = 126/259 (48%), Gaps = 37/259 (14%)

Query: 274 QCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKF----------------------- 310
            C  D +T  ++I G CK+ R+E+AL  L  MV+  F                       
Sbjct: 6   SCSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEA 65

Query: 311 -----------CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
                        P+ VT+T +I GL   GR+ EA+ LL ++  ++   P  VTYN+++ 
Sbjct: 66  RKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKM--RKKCVPTAVTYNSLIS 123

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
           GL +  R  EA ++   M+  G + D  TY  +I G C+S + D+A R ++ +V      
Sbjct: 124 GLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRP 183

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG-VTPNIVCYNVVIDGACKLSMKREAYQI 478
           D   Y+ +I GLC+ G++ EA+     ++ SG   PN V YN +I G C++    EA  +
Sbjct: 184 DVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNL 243

Query: 479 LREMRKNGLNPDAVTWRIL 497
           L  M + G +PD VT+  L
Sbjct: 244 LERMAETGSSPDVVTYTTL 262



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 64/193 (33%), Positives = 102/193 (52%), Gaps = 2/193 (1%)

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
           MVA   C+ D VT+T++I GL  V R+++AL  L + M  +G+ P + TY AV+  L   
Sbjct: 1   MVATNSCSADFVTYTSLIQGLCKVKRLEQALIFLGK-MVSKGFHPDVYTYTAVIHALCVE 59

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY 424
            R+ EA++    M    +  +  TY ++IDGLC+  ++DEA      +     +     Y
Sbjct: 60  NRLHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKM-RKKCVPTAVTY 118

Query: 425 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484
            ++I GLC++ +  EA   L E+V SG  P+I  Y  +I G CK     +A ++  ++  
Sbjct: 119 NSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVA 178

Query: 485 NGLNPDAVTWRIL 497
            G  PD VT+  L
Sbjct: 179 RGFRPDVVTYSCL 191



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 115/239 (48%), Gaps = 12/239 (5%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M+  C L+R+ +A+ L   M  +G  P+VV++T+L+ G CR   +  A  +  EMR    
Sbjct: 263 MNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSC 322

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P   TY+ ++ G  R   +E A   M        EE D   N  +F  ++  LC+    
Sbjct: 323 SPTVYTYNTILDGYCRANQLEEARKFML-------EEMDCPPNVVSFNIMIRGLCKVNRS 375

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVM-RKRGLTPSLVSYNS 179
           +E   + E+  + +   +      +ID LCR  +   A RV   M  + G  P+ ++Y++
Sbjct: 376 SEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYST 435

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
           +V GLC  G   RA   +E+G     +P+  TY +L++     +  E AR++L  M+ +
Sbjct: 436 LVTGLCNAGMLDRARGYIEKGC----VPNIGTYNLLIDAFRKANRDEDARELLDDMVQR 490


>gi|193806393|sp|P0C7Q7.1|PPR38_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial; Flags: Precursor
          Length = 602

 Score =  214 bits (544), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 133/483 (27%), Positives = 247/483 (51%), Gaps = 42/483 (8%)

Query: 24  GHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERA 83
           G   N+ +   +I+ +CR  +   AY V  ++   G  P++ T++ L++G+     V  A
Sbjct: 118 GIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEA 177

Query: 84  NVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACG 143
            VL+ ++ E   + + ++ N+     +V+ +CR G  +    +   M +     + F   
Sbjct: 178 VVLVDRMVENGCQPDVVTYNS-----IVNGICRSGDTSLALDLLRKMEERNVKADVFTYS 232

Query: 144 HMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQF 203
            +IDSLCR G    A  +   M  +G+  S+V+YNS+V GLCK G       LL++ +  
Sbjct: 233 TIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSR 292

Query: 204 GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTEL 263
             +P+  T+ VL++    E  L++A ++ + M+++                         
Sbjct: 293 EIVPNVITFNVLLDVFVKEGKLQEANELYKEMITR------------------------- 327

Query: 264 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF 323
                        P++IT NT+++G+C   R+ EA  +L+ MV  K C+PD VTFT++I 
Sbjct: 328 ----------GISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNK-CSPDIVTFTSLIK 376

Query: 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 383
           G   V R+ + + + ++ + +RG     VTY+ +++G  +  +++ A+E+F  M+  GV+
Sbjct: 377 GYCMVKRVDDGMKV-FRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVL 435

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
            D  TY I++DGLC++ +L++A   ++D+          +Y  +I+G+C+ GK+ +A + 
Sbjct: 436 PDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNL 495

Query: 444 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGN 503
              L   GV PN++ Y V+I G CK     EA  +LR+M ++G  P+  T+  L + H  
Sbjct: 496 FCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLR 555

Query: 504 RGN 506
            G+
Sbjct: 556 DGD 558



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 105/441 (23%), Positives = 219/441 (49%), Gaps = 7/441 (1%)

Query: 24  GHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERA 83
           G+ P+  ++ TLI G    G++  A  + D M   G  P+ +TY+ +V G+ R+ D   A
Sbjct: 153 GYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLA 212

Query: 84  NVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACG 143
             L+ K+     EE ++  +   ++ ++DSLCR+G ++    + ++M      +      
Sbjct: 213 LDLLRKM-----EERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYN 267

Query: 144 HMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQF 203
            ++  LC++G+ +  + ++  M  R + P+++++N ++    K G    A +L +E I  
Sbjct: 268 SLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITR 327

Query: 204 GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTEL 263
           G  P+  TY  L++G C ++ L +A  +L  M+  K           ++  C++K   + 
Sbjct: 328 GISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDG 387

Query: 264 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF 323
           + V   + +     + +T + ++ GFC+ G+I+ A ++  +MV+     PD +T+  ++ 
Sbjct: 388 MKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGV-LPDVMTYGILLD 446

Query: 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 383
           GL + G++++AL + ++ + +     GIV Y  ++ G+ +  +VE+A  +F  +   GV 
Sbjct: 447 GLCDNGKLEKALEI-FEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVK 505

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
            +  TY ++I GLC+   L EA      +    N  ++  Y  +I+   R G +  +   
Sbjct: 506 PNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKL 565

Query: 444 LYELVDSGVTPNIVCYNVVID 464
           + E+   G + +     +VID
Sbjct: 566 IEEMKSCGFSADASSIKMVID 586



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 115/486 (23%), Positives = 230/486 (47%), Gaps = 42/486 (8%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           +A  LF +M     +P++V ++       RT + ++      ++   G+  N  T ++++
Sbjct: 71  DAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMI 130

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP 131
               R      A  ++ K+  ++  E D       F  L+  L  EG V+E   + + M 
Sbjct: 131 NCFCRCCKTCFAYSVLGKVM-KLGYEPD----TTTFNTLIKGLFLEGKVSEAVVLVDRMV 185

Query: 132 QGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCM 191
           +     +      +++ +CRSG    A  ++  M +R +   + +Y++I+  LC+ G   
Sbjct: 186 ENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCID 245

Query: 192 RAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYL 251
            A  L +E    G   S  TY  LV GLC          +L+ M+S++ V          
Sbjct: 246 AAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIV---------- 295

Query: 252 RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC 311
                                    P+VIT N +++ F K G+++EA ++  +M+  +  
Sbjct: 296 -------------------------PNVITFNVLLDVFVKEGKLQEANELYKEMIT-RGI 329

Query: 312 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK 371
           +P+ +T+ T++ G     R+ EA N+L  +M +   SP IVT+ ++++G   ++RV++  
Sbjct: 330 SPNIITYNTLMDGYCMQNRLSEANNML-DLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGM 388

Query: 372 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 431
           +VF  +   G+VA++ TY+I++ G C+S ++  A+  + ++V    + D   Y  ++ GL
Sbjct: 389 KVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGL 448

Query: 432 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 491
           C +GK+ +A+    +L  S +   IV Y  +I+G CK     +A+ +   +   G+ P+ 
Sbjct: 449 CDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNV 508

Query: 492 VTWRIL 497
           +T+ ++
Sbjct: 509 MTYTVM 514



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 106/410 (25%), Positives = 193/410 (47%), Gaps = 45/410 (10%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    +  A  LF +M+++G   +VV+Y +L+ G C+ G+ +    +  +M    +
Sbjct: 235 IDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREI 294

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +PN +T++VL+   ++   ++ AN L  ++  R      +S N   +  L+D  C +  +
Sbjct: 295 VPNVITFNVLLDVFVKEGKLQEANELYKEMITR-----GISPNIITYNTLMDGYCMQNRL 349

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E   + + M + K   +      +I   C   R     +V   + KRGL  + V+Y+ +
Sbjct: 350 SEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSIL 409

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           V G C+ G    A +L +E +  G LP   TY +L++GLC    LEKA ++ +      D
Sbjct: 410 VQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFE------D 463

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           + ++++                                ++   T+I G CK G++E+A  
Sbjct: 464 LQKSKM-----------------------------DLGIVMYTTIIEGMCKGGKVEDAWN 494

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +   +   K   P+ +T+T +I GL   G + EA N+L + M + G +P   TYN ++R 
Sbjct: 495 LFCSLPC-KGVKPNVMTYTVMISGLCKKGSLSEA-NILLRKMEEDGNAPNDCTYNTLIRA 552

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD 410
             R   +  + ++   M   G  AD+++  +VID L  S +LD  K F D
Sbjct: 553 HLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDMLL-SGELD--KSFLD 599


>gi|302792252|ref|XP_002977892.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
 gi|300154595|gb|EFJ21230.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
          Length = 500

 Score =  214 bits (544), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 126/449 (28%), Positives = 227/449 (50%), Gaps = 45/449 (10%)

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           +TY+ L++G+ + + +E+A + + K+  +         +   +  ++ +LC E  ++E  
Sbjct: 12  VTYTSLIQGLCKVKRLEQALIFLGKMVSK-----GFHPDVYTYTAVIHALCVENRLHEAR 66

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
           +  E+M              +ID LC+ GR   A  ++  MRK+ + P+ V+YNS++ GL
Sbjct: 67  KFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCV-PTAVTYNSLISGL 125

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
           CK      AY LLEE +  G +P   TY  L+ G C     + A +V + ++++      
Sbjct: 126 CKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARG----- 180

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
                                          +PDV+T + +I+G CK GR++EA+ +   
Sbjct: 181 ------------------------------FRPDVVTYSCLIDGLCKEGRLKEAIDLFGR 210

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
           M+    C P+ VT+ ++I G   +G++ EA+NLL + M + G SP +VTY  ++ G  +L
Sbjct: 211 MIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLL-ERMAETGSSPDVVTYTTLMNGFCKL 269

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY 424
            R+++A ++ N M   G+  D  T+  ++DGLC  N+L +A     ++   S     Y Y
Sbjct: 270 ARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTY 329

Query: 425 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484
             ++ G CR+ ++ EA  F+ E +D    PN+V +N++I G CK++   EA +++ E R+
Sbjct: 330 NTILDGYCRANQLEEARKFMLEEMD--CPPNVVSFNIMIRGLCKVNRSSEAMELVEEARR 387

Query: 485 NGLNPDAVTW-RILDKLHGNRGNDFGLRI 512
              NPD V +  ++D L   +  D   R+
Sbjct: 388 RRCNPDVVMYTTVIDGLCREKKVDEACRV 416



 Score =  211 bits (536), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 131/486 (26%), Positives = 237/486 (48%), Gaps = 16/486 (3%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC + R+ +A      M S+G  P+V +YT +IH  C    +  A K  +EM +  + PN
Sbjct: 21  LCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEMANRNLTPN 80

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY+VL+ G+ +   V+ A  L+ K+ ++             + +L+  LC+    +E 
Sbjct: 81  VVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVP------TAVTYNSLISGLCKAERASEA 134

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           + + E+M     + + F    +I   C+S ++  A RV   +  RG  P +V+Y+ ++ G
Sbjct: 135 YDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDG 194

Query: 184 LCKHGGCMRAYQLLEEGIQFGY-LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           LCK G    A  L    I+ G  +P+  TY  L+ G C    +++A  +L+ M       
Sbjct: 195 LCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSP 254

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
                   +   C +    +  ++L  M +    PDV+T  ++++G C+  R+ +A+ +L
Sbjct: 255 DVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHIL 314

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
            +M   K C+P   T+ TI+ G     +++EA   + + M      P +V++N ++RGL 
Sbjct: 315 GEM-RRKSCSPTVYTYNTILDGYCRANQLEEARKFMLEEM---DCPPNVVSFNIMIRGLC 370

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV-WPSNIHDN 421
           ++ R  EA E+           D   Y  VIDGLC   ++DEA R +  ++  P  + ++
Sbjct: 371 KVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNS 430

Query: 422 YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
             Y+ +I GLC +G +  A  +    ++ G  PNI  YN++ID   K +   +A ++L +
Sbjct: 431 ITYSTLITGLCNAGMLDRARGY----IEKGCVPNIGTYNLLIDAFRKANRDEDARELLDD 486

Query: 482 MRKNGL 487
           M + G 
Sbjct: 487 MVQRGF 492



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 80/259 (30%), Positives = 126/259 (48%), Gaps = 37/259 (14%)

Query: 274 QCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKF----------------------- 310
            C  D +T  ++I G CK+ R+E+AL  L  MV+  F                       
Sbjct: 6   SCSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEA 65

Query: 311 -----------CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
                        P+ VT+T +I GL   GR+ EA+ LL ++  ++   P  VTYN+++ 
Sbjct: 66  RKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKM--RKKCVPTAVTYNSLIS 123

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
           GL +  R  EA ++   M+  G + D  TY  +I G C+S + D+A R ++ +V      
Sbjct: 124 GLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRP 183

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG-VTPNIVCYNVVIDGACKLSMKREAYQI 478
           D   Y+ +I GLC+ G++ EA+     ++ SG   PN V YN +I G C++    EA  +
Sbjct: 184 DVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNL 243

Query: 479 LREMRKNGLNPDAVTWRIL 497
           L  M + G +PD VT+  L
Sbjct: 244 LERMAETGSSPDVVTYTTL 262



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 64/193 (33%), Positives = 102/193 (52%), Gaps = 2/193 (1%)

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
           MVA   C+ D VT+T++I GL  V R+++AL  L + M  +G+ P + TY AV+  L   
Sbjct: 1   MVATNSCSADFVTYTSLIQGLCKVKRLEQALIFLGK-MVSKGFHPDVYTYTAVIHALCVE 59

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY 424
            R+ EA++    M    +  +  TY ++IDGLC+  ++DEA      +     +     Y
Sbjct: 60  NRLHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKM-RKKCVPTAVTY 118

Query: 425 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484
            ++I GLC++ +  EA   L E+V SG  P+I  Y  +I G CK     +A ++  ++  
Sbjct: 119 NSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVA 178

Query: 485 NGLNPDAVTWRIL 497
            G  PD VT+  L
Sbjct: 179 RGFRPDVVTYSCL 191



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 115/239 (48%), Gaps = 12/239 (5%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M+  C L+R+ +A+ L   M  +G  P+VV++T+L+ G CR   +  A  +  EMR    
Sbjct: 263 MNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSC 322

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P   TY+ ++ G  R   +E A   M        EE D   N  +F  ++  LC+    
Sbjct: 323 SPTVYTYNTILDGYCRANQLEEARKFML-------EEMDCPPNVVSFNIMIRGLCKVNRS 375

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVM-RKRGLTPSLVSYNS 179
           +E   + E+  + +   +      +ID LCR  +   A RV   M  + G  P+ ++Y++
Sbjct: 376 SEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYST 435

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
           ++ GLC  G   RA   +E+G     +P+  TY +L++     +  E AR++L  M+ +
Sbjct: 436 LITGLCNAGMLDRARGYIEKGC----VPNIGTYNLLIDAFRKANRDEDARELLDDMVQR 490


>gi|115470153|ref|NP_001058675.1| Os07g0101200 [Oryza sativa Japonica Group]
 gi|50508922|dbj|BAD31827.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|113610211|dbj|BAF20589.1| Os07g0101200 [Oryza sativa Japonica Group]
          Length = 738

 Score =  214 bits (544), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 146/496 (29%), Positives = 240/496 (48%), Gaps = 14/496 (2%)

Query: 3   QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
             C  +R   A +L   +  RG     V+Y T++ G    G    A ++FD+M H  V P
Sbjct: 132 SFCLTARPHIALRLLRALPHRG----AVAYCTVVCGLYAHGHTHDARQLFDQMLHTHVFP 187

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           N   ++ ++  + +  DV  A +L+ K+ +R      +S+N   +   +  LC  G + E
Sbjct: 188 NLAAFNKVLHALCKRGDVLEAGLLLGKVIQR-----GMSINLFTYNIWIRGLCEAGRLPE 242

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
             R+ + M +  +V +      +I  LC+      A   +  M  +G  P   +YN+I+ 
Sbjct: 243 AVRLVDGM-RAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIID 301

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           G CK      A +LL++ +  G++P + TY  L+ GLC E D+E+A ++     +K    
Sbjct: 302 GYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKP 361

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
              + N  ++ LCL       L V+  M +  C PD+ T N VING CKMG I +A  V+
Sbjct: 362 DIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVM 421

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
           ND +   +  PD  TF T+I G     ++  AL L+ + M + G +P  +TYN+VL GL 
Sbjct: 422 NDAIMKGYL-PDVFTFNTLIDGYCKRLKLDSALQLV-ERMWEYGIAPDTITYNSVLNGLC 479

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
           +  +V E  E F  M+  G   +  TY I+I+  C SN+++EA +    +       D  
Sbjct: 480 KAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAV 539

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDG-ACKLSMKREAYQILRE 481
            +  +I G CR+G +  A     +L + G +     +N +I   + KL+M   A +I  E
Sbjct: 540 SFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHM-AEKIFDE 598

Query: 482 MRKNGLNPDAVTWRIL 497
           M   G   D+ T+R+L
Sbjct: 599 MLSKGHRADSYTYRVL 614



 Score =  192 bits (487), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 130/457 (28%), Positives = 222/457 (48%), Gaps = 14/457 (3%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R+ EA +L   M++   VP+VV+Y TLI G C+      A      M + G LP+
Sbjct: 234 LCEAGRLPEAVRLVDGMRAYA-VPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPD 292

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEE--EDLSVNNAAFANLVDSLCREGYVN 121
             TY+ ++ G  +   V+ A        E +K+   +    +   + +L++ LC EG V 
Sbjct: 293 DFTYNTIIDGYCKISMVQEAT-------ELLKDAVFKGFVPDQVTYCSLINGLCAEGDVE 345

Query: 122 EVFRIAEDMPQGKSVNEEFAC-GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
               +  +  Q K +  +      ++  LC  G    A +V+  M + G  P + +YN +
Sbjct: 346 RALELFNE-AQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIV 404

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++GLCK G    A  ++ + I  GYLP   T+  L++G C    L+ A ++++ M     
Sbjct: 405 INGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGI 464

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
              T   N  L  LC      E+      M+   C P+ IT N +I  FC+  ++EEA K
Sbjct: 465 APDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASK 524

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           V+  M + +   PDAV+F T+I+G    G ++ A  LL+Q + ++GYS    T+N ++  
Sbjct: 525 VIVKM-SQEGLHPDAVSFNTLIYGFCRNGDLEGAY-LLFQKLEEKGYSATADTFNTLIGA 582

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
                 +  A+++F+ ML  G  ADS TY ++IDG C++  +D A     +++    I  
Sbjct: 583 FSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPS 642

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIV 457
              +  +I  L  + ++ +AV  ++ +V  GV P +V
Sbjct: 643 MSTFGRVINSLTVNHRVFQAVGIIHIMVKIGVVPEVV 679



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 96/354 (27%), Positives = 164/354 (46%), Gaps = 11/354 (3%)

Query: 146 IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY 205
           I +  R+GR   A      M      P+  +YN+I+  L       +A+++    +  G 
Sbjct: 60  IRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGV 119

Query: 206 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR-TRICNIYLRALCLIKNPTELL 264
            P  HT+ + +   C  +    A ++L+ +  +  V   T +C +Y        +  +  
Sbjct: 120 SPDLHTHTIRLRSFCLTARPHIALRLLRALPHRGAVAYCTVVCGLYAHG-----HTHDAR 174

Query: 265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 324
            +   ML T   P++   N V++  CK G + EA  +L  ++  +  + +  T+   I G
Sbjct: 175 QLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQ-RGMSINLFTYNIWIRG 233

Query: 325 LLNVGRIQEALNLLYQVMPQRGYS-PGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 383
           L   GR+ EA+ L   V   R Y+ P +VTYN ++RGL +    +EA      M+  G +
Sbjct: 234 LCEAGRLPEAVRL---VDGMRAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCL 290

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
            D  TY  +IDG C+ + + EA     D V+   + D   Y ++I GLC  G +  A+  
Sbjct: 291 PDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALEL 350

Query: 444 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
             E    G+ P+IV YN ++ G C   +   A Q++ EM + G +PD  T+ I+
Sbjct: 351 FNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIV 404



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 92/357 (25%), Positives = 153/357 (42%), Gaps = 10/357 (2%)

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVS--YNSIVHGLCKHGGCMRAYQLLEEGIQ 202
           +I  L  +GR       V   R R L+P+ +   Y + +    + G    A    E    
Sbjct: 23  LIRPLASAGRVDAVDAAVASARSR-LSPATIHPLYVASIRAYARAGRLRDAVDAFERMDL 81

Query: 203 FGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTE 262
           F   P+   Y  +++ L   +  ++A KV   ML+           I LR+ CL   P  
Sbjct: 82  FACPPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGVSPDLHTHTIRLRSFCLTARP-- 139

Query: 263 LLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTII 322
             ++ + +L+       +   TV+ G    G   +A ++ + M+      P+   F  ++
Sbjct: 140 --HIALRLLRALPHRGAVAYCTVVCGLYAHGHTHDARQLFDQMLH-THVFPNLAAFNKVL 196

Query: 323 FGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGV 382
             L   G + EA  LL +V+ QRG S  + TYN  +RGL    R+ EA  + + M    V
Sbjct: 197 HALCKRGDVLEAGLLLGKVI-QRGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYAV 255

Query: 383 VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVH 442
             D  TY  +I GLC+ +   EA  +   ++    + D++ Y  +I G C+   + EA  
Sbjct: 256 -PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATE 314

Query: 443 FLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
            L + V  G  P+ V Y  +I+G C       A ++  E +  G+ PD V +  L K
Sbjct: 315 LLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVK 371



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 103/207 (49%), Gaps = 5/207 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   +V E ++ F +M  +G  PN ++Y  LI  +CR+ +M+ A KV  +M   G+
Sbjct: 475 LNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGL 534

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P++++++ L+ G  R  D+E A +L  KL     EE+  S     F  L+ +   +  +
Sbjct: 535 HPDAVSFNTLIYGFCRNGDLEGAYLLFQKL-----EEKGYSATADTFNTLIGAFSGKLNM 589

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +   +I ++M       + +    +ID  C++     A   +  M K+G  PS+ ++  +
Sbjct: 590 HMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRV 649

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLP 207
           ++ L  +    +A  ++   ++ G +P
Sbjct: 650 INSLTVNHRVFQAVGIIHIMVKIGVVP 676


>gi|224130786|ref|XP_002328376.1| predicted protein [Populus trichocarpa]
 gi|222838091|gb|EEE76456.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  214 bits (544), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 146/494 (29%), Positives = 239/494 (48%), Gaps = 42/494 (8%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC L+ V  A  +   M   G  P+ +++ TLI+G C  GE+  A  +F+EM   G  P+
Sbjct: 137 LCRLNHVVFAISVLGKMFKLGIQPDAITFNTLINGRCIEGEIKEAVGLFNEMVRRGHQPD 196

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            ++YS ++ G+ ++ +   A  L+ K+     EE+    N  A+  ++DSLC++  VN+ 
Sbjct: 197 VISYSTVINGLCKSGNTSMALQLLRKM-----EEKGCKPNLVAYTTIIDSLCKDTLVNDA 251

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             +  +               M+D                    RG+ P +V+Y++I+HG
Sbjct: 252 MDLLSE---------------MVD--------------------RGIPPDVVTYSTILHG 276

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            C  G    A  L  E +    +P+  T+ +LV+GLC E  + +AR V + M  K     
Sbjct: 277 FCSLGHLNEATILFNEMVGRNVMPNTVTFTILVDGLCKEGMVSEARCVFEAMTKKGAEPN 336

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               N  +   CL     E   VL  M+   C P V + N +ING+CK  R++EA  +L 
Sbjct: 337 AYTYNALMDGYCLNNQMDEAQKVLDIMVDKGCAPVVHSYNILINGYCKRRRLDEAKSLLV 396

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           +M + K   PD VT++T++ GL  VGR QEALN L++ M   G  P ++TY+ +L GL +
Sbjct: 397 EM-SEKELTPDTVTYSTLMQGLCQVGRPQEALN-LFKEMCSSGLLPDLMTYSTLLDGLCK 454

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
              ++EA ++   M    +  D   Y I+I+G+  + +L+ AK  +  +           
Sbjct: 455 HGHLDEALKLLKSMQESKIEPDIVLYNILIEGMFIAGKLEVAKELFSKLFADGIQPTIRT 514

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y  MIKGL + G   EA     ++ D G  PN   YNV+I G  +      A +++ EM 
Sbjct: 515 YTIMIKGLLKEGLSDEAYELFRKMEDDGFLPNSCSYNVIIQGFLQNQDSSTAIRLIDEMV 574

Query: 484 KNGLNPDAVTWRIL 497
               + D+ T+++L
Sbjct: 575 GKRFSADSSTFQML 588



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 126/488 (25%), Positives = 239/488 (48%), Gaps = 7/488 (1%)

Query: 10  VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSV 69
           + +A   F+ M      P+VV +   +    +  +      + ++M   GV  N  + ++
Sbjct: 73  IDDALASFYRMLRMNPRPSVVEFGRFLGSIAKKKQYSTVVSLCNQMDLFGVTHNVYSLNI 132

Query: 70  LVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAED 129
           L+  + R   V  A  ++ K+++   + + ++ N      L++  C EG + E   +  +
Sbjct: 133 LINCLCRLNHVVFAISVLGKMFKLGIQPDAITFNT-----LINGRCIEGEIKEAVGLFNE 187

Query: 130 MPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG 189
           M +     +  +   +I+ LC+SG    A +++  M ++G  P+LV+Y +I+  LCK   
Sbjct: 188 MVRRGHQPDVISYSTVINGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDSLCKDTL 247

Query: 190 CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNI 249
              A  LL E +  G  P   TY  ++ G C    L +A  +   M+ +  +  T    I
Sbjct: 248 VNDAMDLLSEMVDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTI 307

Query: 250 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK 309
            +  LC     +E   V   M +   +P+  T N +++G+C   +++EA KVL D++  K
Sbjct: 308 LVDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVL-DIMVDK 366

Query: 310 FCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEE 369
            CAP   ++  +I G     R+ EA +LL + M ++  +P  VTY+ +++GL ++ R +E
Sbjct: 367 GCAPVVHSYNILINGYCKRRRLDEAKSLLVE-MSEKELTPDTVTYSTLMQGLCQVGRPQE 425

Query: 370 AKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIK 429
           A  +F  M   G++ D  TY+ ++DGLC+   LDEA +    +       D  +Y  +I+
Sbjct: 426 ALNLFKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKIEPDIVLYNILIE 485

Query: 430 GLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNP 489
           G+  +GK+  A     +L   G+ P I  Y ++I G  K  +  EAY++ R+M  +G  P
Sbjct: 486 GMFIAGKLEVAKELFSKLFADGIQPTIRTYTIMIKGLLKEGLSDEAYELFRKMEDDGFLP 545

Query: 490 DAVTWRIL 497
           ++ ++ ++
Sbjct: 546 NSCSYNVI 553



 Score =  164 bits (416), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 110/431 (25%), Positives = 205/431 (47%), Gaps = 43/431 (9%)

Query: 107 FANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMR 166
           F   + S+ ++   + V  +   M      +  ++   +I+ LCR      A  V+  M 
Sbjct: 95  FGRFLGSIAKKKQYSTVVSLCNQMDLFGVTHNVYSLNILINCLCRLNHVVFAISVLGKMF 154

Query: 167 KRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLE 226
           K G+ P  +++N++++G C  G    A  L  E ++ G+ P   +Y  ++ GLC   +  
Sbjct: 155 KLGIQPDAITFNTLINGRCIEGEIKEAVGLFNEMVRRGHQPDVISYSTVINGLCKSGNTS 214

Query: 227 KARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVI 286
            A ++L+ M  K            + +LC      + +++L  M+     PDV+T +T++
Sbjct: 215 MALQLLRKMEEKGCKPNLVAYTTIIDSLCKDTLVNDAMDLLSEMVDRGIPPDVVTYSTIL 274

Query: 287 NGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
           +GFC +G + EA  + N+MV G+   P+ VTFT ++ GL   G + EA   +++ M ++G
Sbjct: 275 HGFCSLGHLNEATILFNEMV-GRNVMPNTVTFTILVDGLCKEGMVSEA-RCVFEAMTKKG 332

Query: 347 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
             P   TYNA++ G     +++EA++V + M+  G      +Y I+I+G C+  +LDEAK
Sbjct: 333 AEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKGCAPVVHSYNILINGYCKRRRLDEAK 392

Query: 407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG--------------- 451
               ++       D   Y+ +++GLC+ G+  EA++   E+  SG               
Sbjct: 393 SLLVEMSEKELTPDTVTYSTLMQGLCQVGRPQEALNLFKEMCSSGLLPDLMTYSTLLDGL 452

Query: 452 --------------------VTPNIVCYNVVIDG---ACKLSMKREAYQILREMRKNGLN 488
                               + P+IV YN++I+G   A KL + +E +    ++  +G+ 
Sbjct: 453 CKHGHLDEALKLLKSMQESKIEPDIVLYNILIEGMFIAGKLEVAKELFS---KLFADGIQ 509

Query: 489 PDAVTWRILDK 499
           P   T+ I+ K
Sbjct: 510 PTIRTYTIMIK 520



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 103/394 (26%), Positives = 189/394 (47%), Gaps = 42/394 (10%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC  + V +A  L  +M  RG  P+VV+Y+T++HG+C  G ++ A  +F+EM    V
Sbjct: 239 IDSLCKDTLVNDAMDLLSEMVDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNV 298

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +PN++T+++LV G+ +   V  A  +   + ++  E      N   +  L+D  C    +
Sbjct: 299 MPNTVTFTILVDGLCKEGMVSEARCVFEAMTKKGAEP-----NAYTYNALMDGYCLNNQM 353

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E  ++ + M          +   +I+  C+  R   A  ++  M ++ LTP  V+Y+++
Sbjct: 354 DEAQKVLDIMVDKGCAPVVHSYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTL 413

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GLC+ G    A  L +E    G LP   TY  L++GLC    L++A K+L+       
Sbjct: 414 MQGLCQVGRPQEALNLFKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLK------- 466

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                        M +++ +PD++  N +I G    G++E A +
Sbjct: 467 ----------------------------SMQESKIEPDIVLYNILIEGMFIAGKLEVAKE 498

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           + + + A     P   T+T +I GLL  G   EA   L++ M   G+ P   +YN +++G
Sbjct: 499 LFSKLFADGI-QPTIRTYTIMIKGLLKEGLSDEAYE-LFRKMEDDGFLPNSCSYNVIIQG 556

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVID 394
             + +    A  + + M+G    ADS+T+ +++D
Sbjct: 557 FLQNQDSSTAIRLIDEMVGKRFSADSSTFQMLLD 590


>gi|356510082|ref|XP_003523769.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 602

 Score =  214 bits (544), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 124/400 (31%), Positives = 206/400 (51%), Gaps = 6/400 (1%)

Query: 114 LCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPS 173
           L R G + E  +  E M     + +  AC  +I   CRSG+   A+R++ ++   G  P 
Sbjct: 116 LVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTKKATRIMEILENSGAVPD 175

Query: 174 LVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQ 233
           +++YN ++ G CK G   +A ++LE   +    P   TY  ++  LC    L++A +VL 
Sbjct: 176 VITYNVLIGGYCKSGEIDKALEVLE---RMSVAPDVVTYNTILRSLCDSGKLKEAMEVLD 232

Query: 234 FMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMG 293
             L ++         I + A C      + + +L  M +  C+PDV+T N +ING CK G
Sbjct: 233 RQLQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEG 292

Query: 294 RIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVT 353
           R++EA+K LN+M     C P+ +T   I+  + + GR  +A  LL  ++ ++G SP +VT
Sbjct: 293 RLDEAIKFLNNM-PSYGCKPNVITHNIILRSMCSTGRWMDAERLLSDML-RKGCSPSVVT 350

Query: 354 YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413
           +N ++  L R R +  A +V   M   G V +S +Y  ++ G C+  ++D A  + + +V
Sbjct: 351 FNILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMV 410

Query: 414 WPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKR 473
                 D   Y  ++  LC+ GK+  AV  L +L   G +P ++ YN VIDG  K+    
Sbjct: 411 SRGCYPDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTE 470

Query: 474 EAYQILREMRKNGLNPDAVTWRILDKLHGNRGN-DFGLRI 512
            A ++L EMR+ GL PD +T+  L +  G  G  D  ++I
Sbjct: 471 YAVELLEEMRRKGLKPDIITYSTLLRGLGREGKVDEAIKI 510



 Score =  211 bits (538), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 124/454 (27%), Positives = 238/454 (52%), Gaps = 10/454 (2%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           E  K    M  +G +P+V++ T+LI G+CR+G+   A ++ + + + G +P+ +TY+VL+
Sbjct: 124 EGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTKKATRIMEILENSGAVPDVITYNVLI 183

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP 131
            G  ++ ++++A     ++ ERM    D+      +  ++ SLC  G + E   + +   
Sbjct: 184 GGYCKSGEIDKA----LEVLERMSVAPDV----VTYNTILRSLCDSGKLKEAMEVLDRQL 235

Query: 132 QGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCM 191
           Q +   +      +I++ C       A +++  MRK+G  P +V+YN +++G+CK G   
Sbjct: 236 QRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLD 295

Query: 192 RAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYL 251
            A + L     +G  P+  T+ +++  +C       A ++L  ML K         NI +
Sbjct: 296 EAIKFLNNMPSYGCKPNVITHNIILRSMCSTGRWMDAERLLSDMLRKGCSPSVVTFNILI 355

Query: 252 RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC 311
             LC  +     ++VL  M +  C P+ ++ N +++GFC+  +++ A++ L  MV+ + C
Sbjct: 356 NFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVS-RGC 414

Query: 312 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK 371
            PD VT+ T++  L   G++  A+ +L Q +  +G SP ++TYN V+ GL ++ + E A 
Sbjct: 415 YPDIVTYNTLLTALCKDGKVDAAVEILNQ-LSSKGCSPVLITYNTVIDGLTKVGKTEYAV 473

Query: 372 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 431
           E+   M   G+  D  TY+ ++ GL    ++DEA + + D+   S       Y A++ GL
Sbjct: 474 ELLEEMRRKGLKPDIITYSTLLRGLGREGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGL 533

Query: 432 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDG 465
           C++ +   A+ FL  +V+ G  P    Y ++I+G
Sbjct: 534 CKAQQTSRAIDFLAYMVEKGCKPTEATYTILIEG 567



 Score =  197 bits (502), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 118/428 (27%), Positives = 227/428 (53%), Gaps = 10/428 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C   +  +A ++   +++ G VP+V++Y  LI GYC++GE+D A +V + M    V P+
Sbjct: 151 FCRSGKTKKATRIMEILENSGAVPDVITYNVLIGGYCKSGEIDKALEVLERM---SVAPD 207

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY+ ++R +  +  ++ A  ++ +  +R     +   +   +  L+++ C +  V + 
Sbjct: 208 VVTYNTILRSLCDSGKLKEAMEVLDRQLQR-----ECYPDVITYTILIEATCNDSGVGQA 262

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            ++ ++M +     +      +I+ +C+ GR   A + +  M   G  P+++++N I+  
Sbjct: 263 MKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCKPNVITHNIILRS 322

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           +C  G  M A +LL + ++ G  PS  T+ +L+  LC +  L +A  VL+ M     V  
Sbjct: 323 MCSTGRWMDAERLLSDMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCVPN 382

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
           +   N  L   C  K     +  L  M+   C PD++T NT++   CK G+++ A+++LN
Sbjct: 383 SLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDAAVEILN 442

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            + + K C+P  +T+ T+I GL  VG+ + A+ LL + M ++G  P I+TY+ +LRGL R
Sbjct: 443 QL-SSKGCSPVLITYNTVIDGLTKVGKTEYAVELLEE-MRRKGLKPDIITYSTLLRGLGR 500

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
             +V+EA ++F+ M G+ +   + TY  ++ GLC++ Q   A  F   +V          
Sbjct: 501 EGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTEAT 560

Query: 424 YAAMIKGL 431
           Y  +I+G+
Sbjct: 561 YTILIEGI 568



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 94/361 (26%), Positives = 166/361 (45%), Gaps = 42/361 (11%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C  S VG+A KL  +M+ +G  P+VV+Y  LI+G C+ G +D A K  + M   G 
Sbjct: 250 IEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGC 309

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +T+++++R +  T     A  L+  +  +       S +   F  L++ LCR+  +
Sbjct: 310 KPNVITHNIILRSMCSTGRWMDAERLLSDMLRK-----GCSPSVVTFNILINFLCRKRLL 364

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                + E MP+   V    +   ++   C+  +   A   + +M  RG  P +V+YN++
Sbjct: 365 GRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTL 424

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +  LCK G    A ++L +    G  P   TY  +++GL      E A ++L+ M  K  
Sbjct: 425 LTALCKDGKVDAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAVELLEEMRRK-- 482

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                              +PD+IT +T++ G  + G+++EA+K
Sbjct: 483 ---------------------------------GLKPDIITYSTLLRGLGREGKVDEAIK 509

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           + +DM  G    P AVT+  I+ GL    +   A++ L   M ++G  P   TY  ++ G
Sbjct: 510 IFHDM-EGLSIKPSAVTYNAIMLGLCKAQQTSRAIDFL-AYMVEKGCKPTEATYTILIEG 567

Query: 361 L 361
           +
Sbjct: 568 I 568


>gi|225434476|ref|XP_002278184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09060
           [Vitis vinifera]
          Length = 691

 Score =  214 bits (544), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 142/527 (26%), Positives = 253/527 (48%), Gaps = 40/527 (7%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C   +  +A +L   M  +G  P+V SY TLI+   + G M  A K+FDEM   GV P+ 
Sbjct: 160 CRKKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDV 219

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
             Y++L+ G  +  D+  A+    ++WER+ +   +  N  ++  +++ LC+ G  +E F
Sbjct: 220 ACYNILIDGFFKKGDILNAS----EIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESF 275

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
            I   M + +   + +    +I  LC SG   GA+RV   M + G++P +V YN++++G 
Sbjct: 276 EIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGY 335

Query: 185 CKHG---GCMRAYQLLE------------------------EGIQFGYLPSEH------- 210
            + G    C+  ++++E                        E I    L  E        
Sbjct: 336 LRAGRIEECLELWKVMEKEGCRTVVSYNILIRGLFENAKVDEAISIWELLPEKDCCADSM 395

Query: 211 TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM 270
           TY VLV GLC    L KA  +L+   + +    T   +  +  LC      E+  VL  M
Sbjct: 396 TYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQM 455

Query: 271 LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR 330
            +  C+P+    N VINGF +  ++E+AL+   +MV+ K C P  VT+ T+I GL    R
Sbjct: 456 TKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVS-KGCFPTVVTYNTLINGLSKAER 514

Query: 331 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYA 390
             EA  L+ +++  +G+ P ++TY+ ++ GL + ++++ A  ++   L  G   D   + 
Sbjct: 515 FSEAYALVKEML-HKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHN 573

Query: 391 IVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 450
           I+I GLC S ++++A + + ++     + +   +  +++G  +      A      ++  
Sbjct: 574 IIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQY 633

Query: 451 GVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           G  P+I+ YN+ + G C      +A   L +    G+ P A+TW IL
Sbjct: 634 GPQPDIISYNITLKGLCSCHRISDAVGFLNDAVDRGVLPTAITWNIL 680



 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 116/431 (26%), Positives = 204/431 (47%), Gaps = 31/431 (7%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   +  E+ +++  MK      ++ +Y+TLIHG C +G +D A +V+ EM   GV
Sbjct: 262 INGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGV 321

Query: 61  LPNSLTYSVLVRGVLRT------------------RDVERANVLMFKLWERMKEEEDLSV 102
            P+ + Y+ ++ G LR                   R V   N+L+  L+E  K +E +S+
Sbjct: 322 SPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRTVVSYNILIRGLFENAKVDEAISI 381

Query: 103 -----------NNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCR 151
                      ++  +  LV  LC+ GY+N+   I E+   G+   + FA   MI+ LCR
Sbjct: 382 WELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGLCR 441

Query: 152 SGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHT 211
            GR    + V+  M K G  P+    N++++G  +      A +     +  G  P+  T
Sbjct: 442 EGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVT 501

Query: 212 YKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFML 271
           Y  L+ GL       +A  +++ ML K         ++ +  LC  K     LN+    L
Sbjct: 502 YNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQAL 561

Query: 272 QTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRI 331
           +   +PDV   N +I+G C  G++E+AL++ ++M   K C P+ VT  T++ G   V   
Sbjct: 562 EKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRK-CVPNLVTHNTLMEGFYKVRDF 620

Query: 332 QEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAI 391
           + A  +   ++ Q G  P I++YN  L+GL    R+ +A    N  +  GV+  + T+ I
Sbjct: 621 ERASKIWDHIL-QYGPQPDIISYNITLKGLCSCHRISDAVGFLNDAVDRGVLPTAITWNI 679

Query: 392 VIDGLCESNQL 402
           ++  + ++  L
Sbjct: 680 LVRAVLDNGAL 690



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 123/498 (24%), Positives = 226/498 (45%), Gaps = 23/498 (4%)

Query: 15  KLFFDMKSRGHVPNVVSYT-------------TLIHGYCRTGEMDVAYKVFDEMRHC-GV 60
           K  FD K   HV  +V                T+I  Y +    D A  +F  M    G 
Sbjct: 51  KRLFDPKLVAHVSRIVELIRTQKCKCPEDVALTVIKAYAKNSMPDQALDIFQRMHEIFGC 110

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P   +Y+ L+  ++ +   + A    F  +E M     LS N   +  L+   CR+   
Sbjct: 111 QPGIRSYNSLLNALIESNKWDEAESF-FLYFETM----GLSPNLQTYNILIKISCRKKQF 165

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           ++   +   M +     + F+ G +I+SL ++G    A ++   M +RG+TP +  YN +
Sbjct: 166 DKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNIL 225

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYL-PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           + G  K G  + A ++ E  ++   + P+  +Y V++ GLC     +++ ++   M   +
Sbjct: 226 IDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNE 285

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                   +  +  LC   N      V   M +    PDV+  NT++NG+ + GRIEE L
Sbjct: 286 RGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECL 345

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           ++    V  K      V++  +I GL    ++ EA+++ ++++P++      +TY  ++ 
Sbjct: 346 ELWK--VMEKEGCRTVVSYNILIRGLFENAKVDEAISI-WELLPEKDCCADSMTYGVLVH 402

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
           GL +   + +A  +           D+  Y+ +I+GLC   +LDE     D +       
Sbjct: 403 GLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKP 462

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           + +V  A+I G  R+ K+ +A+ F   +V  G  P +V YN +I+G  K     EAY ++
Sbjct: 463 NPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALV 522

Query: 480 REMRKNGLNPDAVTWRIL 497
           +EM   G  P+ +T+ +L
Sbjct: 523 KEMLHKGWKPNMITYSLL 540


>gi|218198940|gb|EEC81367.1| hypothetical protein OsI_24568 [Oryza sativa Indica Group]
          Length = 1380

 Score =  213 bits (543), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 146/495 (29%), Positives = 240/495 (48%), Gaps = 14/495 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C  +R   A +L   +  RG     V+Y T++ G    G    A ++FD+M H  V PN
Sbjct: 131 FCLTARPHIALRLLRALPHRG----AVAYCTVVCGLYAHGHTHDARQLFDQMLHTHVFPN 186

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
              ++ ++  + +  DV  A +L+ K+ +R      +S+N   +   +  LC  G + E 
Sbjct: 187 LAAFNKVLHALCKRGDVLEAGLLLGKVIQR-----GMSINLFTYNIWIRGLCEAGRLPEA 241

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            R+ + M +  +V +      +I  LC+      A   +  M  +G  P   +YN+I+ G
Sbjct: 242 VRLVDGM-RAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDG 300

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK      A +LL++ +  G++P + TY  L+ GLC E D+E+A ++     +K     
Sbjct: 301 YCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPD 360

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
             + N  ++ LCL       L V+  M +  C PD+ T N VING CKMG I +A  V+N
Sbjct: 361 IVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMN 420

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           D +   +  PD  TF T+I G     ++  AL L+ + M + G +P  +TYN+VL GL +
Sbjct: 421 DAIMKGYL-PDVFTFNTLIDGYCKRLKLDSALQLV-ERMWEYGIAPDTITYNSVLNGLCK 478

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
             +V E  E F  M+  G   +  TY I+I+  C SN+++EA +    +       D   
Sbjct: 479 AGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVS 538

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDG-ACKLSMKREAYQILREM 482
           +  +I G CR+G +  A     +L + G +     +N +I   + KL+M   A +I  EM
Sbjct: 539 FNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHM-AEKIFDEM 597

Query: 483 RKNGLNPDAVTWRIL 497
              G   D+ T+R+L
Sbjct: 598 LSKGHRADSYTYRVL 612



 Score =  191 bits (486), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 129/455 (28%), Positives = 221/455 (48%), Gaps = 10/455 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R+ EA +L   M++   VP+VV+Y TLI G C+      A      M + G LP+
Sbjct: 232 LCEAGRLPEAVRLVDGMRAYA-VPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPD 290

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             TY+ ++ G  +   V+ A  L+     +    +    +   + +L++ LC EG V   
Sbjct: 291 DFTYNTIIDGYCKISMVQEATELL-----KDAVFKGFVPDQVTYCSLINGLCAEGDVERA 345

Query: 124 FRIAEDMPQGKSVNEEFAC-GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
             +  +  Q K +  +      ++  LC  G    A +V+  M + G  P + +YN +++
Sbjct: 346 LELFNEA-QAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVIN 404

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           GLCK G    A  ++ + I  GYLP   T+  L++G C    L+ A ++++ M       
Sbjct: 405 GLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAP 464

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
            T   N  L  LC      E+      M+   C P+ IT N +I  FC+  ++EEA KV+
Sbjct: 465 DTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVI 524

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
             M + +   PDAV+F T+I+G    G ++ A  LL+Q + ++GYS    T+N ++    
Sbjct: 525 VKM-SQEGLHPDAVSFNTLIYGFCRNGDLEGAY-LLFQKLEEKGYSATADTFNTLIGAFS 582

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
               +  A+++F+ ML  G  ADS TY ++IDG C++  +D A     +++    I    
Sbjct: 583 GKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMS 642

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIV 457
            +  +I  L  + ++ +AV  ++ +V  GV P +V
Sbjct: 643 TFGRVINSLTVNHRVFQAVGIIHIMVKIGVVPEVV 677



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 96/354 (27%), Positives = 164/354 (46%), Gaps = 11/354 (3%)

Query: 146 IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY 205
           I +  R+GR   A      M      P+  +YN+I+  L       +A+++    +  G 
Sbjct: 58  IRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGV 117

Query: 206 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR-TRICNIYLRALCLIKNPTELL 264
            P  HT+ + +   C  +    A ++L+ +  +  V   T +C +Y        +  +  
Sbjct: 118 SPDLHTHTIRLRSFCLTARPHIALRLLRALPHRGAVAYCTVVCGLYAHG-----HTHDAR 172

Query: 265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 324
            +   ML T   P++   N V++  CK G + EA  +L  ++  +  + +  T+   I G
Sbjct: 173 QLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQ-RGMSINLFTYNIWIRG 231

Query: 325 LLNVGRIQEALNLLYQVMPQRGYS-PGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 383
           L   GR+ EA+ L   V   R Y+ P +VTYN ++RGL +    +EA      M+  G +
Sbjct: 232 LCEAGRLPEAVRL---VDGMRAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCL 288

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
            D  TY  +IDG C+ + + EA     D V+   + D   Y ++I GLC  G +  A+  
Sbjct: 289 PDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALEL 348

Query: 444 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
             E    G+ P+IV YN ++ G C   +   A Q++ EM + G +PD  T+ I+
Sbjct: 349 FNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIV 402



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 92/357 (25%), Positives = 153/357 (42%), Gaps = 10/357 (2%)

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVS--YNSIVHGLCKHGGCMRAYQLLEEGIQ 202
           +I  L  +GR       V   R R L+P+ +   Y + +    + G    A    E    
Sbjct: 21  LIRPLASAGRVDAVDAAVASARSR-LSPATIHPLYVASIRAYARAGRLRDAVDAFERMDL 79

Query: 203 FGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTE 262
           F   P+   Y  +++ L   +  ++A KV   ML+           I LR+ CL   P  
Sbjct: 80  FACPPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGVSPDLHTHTIRLRSFCLTARP-- 137

Query: 263 LLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTII 322
             ++ + +L+       +   TV+ G    G   +A ++ + M+      P+   F  ++
Sbjct: 138 --HIALRLLRALPHRGAVAYCTVVCGLYAHGHTHDARQLFDQMLH-THVFPNLAAFNKVL 194

Query: 323 FGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGV 382
             L   G + EA  LL +V+ QRG S  + TYN  +RGL    R+ EA  + + M    V
Sbjct: 195 HALCKRGDVLEAGLLLGKVI-QRGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYAV 253

Query: 383 VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVH 442
             D  TY  +I GLC+ +   EA  +   ++    + D++ Y  +I G C+   + EA  
Sbjct: 254 -PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATE 312

Query: 443 FLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
            L + V  G  P+ V Y  +I+G C       A ++  E +  G+ PD V +  L K
Sbjct: 313 LLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVK 369



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 103/207 (49%), Gaps = 5/207 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   +V E ++ F +M  +G  PN ++Y  LI  +CR+ +M+ A KV  +M   G+
Sbjct: 473 LNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGL 532

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P++++++ L+ G  R  D+E A +L  KL     EE+  S     F  L+ +   +  +
Sbjct: 533 HPDAVSFNTLIYGFCRNGDLEGAYLLFQKL-----EEKGYSATADTFNTLIGAFSGKLNM 587

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +   +I ++M       + +    +ID  C++     A   +  M K+G  PS+ ++  +
Sbjct: 588 HMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRV 647

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLP 207
           ++ L  +    +A  ++   ++ G +P
Sbjct: 648 INSLTVNHRVFQAVGIIHIMVKIGVVP 674


>gi|225434273|ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560
           [Vitis vinifera]
 gi|296084392|emb|CBI24780.3| unnamed protein product [Vitis vinifera]
          Length = 890

 Score =  213 bits (543), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 137/515 (26%), Positives = 246/515 (47%), Gaps = 60/515 (11%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC  +++ EA K+  +M  +G +P+VV+Y  LI GYC+ G +D A+++ D M     
Sbjct: 341 IDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSC 400

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN+ TY+ L+ G+ + R V +A  L+ K+ ER      LS +   + +L+   C+   +
Sbjct: 401 GPNTRTYNELICGLCKKRKVHKAMALLNKMLER-----KLSPSLITYNSLIHGQCKVNDL 455

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
              +R+   M +   V +++     ID+LC+ GR   A  +   ++ +G+  + V Y ++
Sbjct: 456 ESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTAL 515

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G CK G    AY LLE  +    LP+ +TY VL+EGLC E  +++A  ++  ML+   
Sbjct: 516 IDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLT--- 572

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                              +P V+T   +I    K G  + ALK
Sbjct: 573 --------------------------------MGVKPTVVTYTILIGEMLKDGAFDHALK 600

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           V N MV+  +  PD  T+T  +    + G ++E  +++ + M + G  P +VTY  ++ G
Sbjct: 601 VFNHMVSLGY-QPDVCTYTAFLHAYFSQGMLEEVDDVIAK-MNEEGILPDLVTYTVLIDG 658

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK-------------- 406
             RL     A +   CM+  G        +I+I  L   N++ E +              
Sbjct: 659 YARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETRSEIGIDSVSNTLEY 718

Query: 407 ----RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVV 462
               + ++ +V      D  +Y A+I G C+  ++ EA   ++ + + G++P+   YN +
Sbjct: 719 EIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSL 778

Query: 463 IDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           +D  CKL +  EA +++  M +NGL P   ++++L
Sbjct: 779 LDCCCKLGVYAEAVRLVDAMVENGLLPLLESYKLL 813



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 131/496 (26%), Positives = 239/496 (48%), Gaps = 45/496 (9%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHV---PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVL 61
           C +  V    ++F  M + G     P +  Y T++    +   +D    V+ E+ +  + 
Sbjct: 132 CSIEDVLFVLEVFRKMNADGEFKFKPTLRCYNTILMSLSKFLLIDEMKTVYLELLNNQIS 191

Query: 62  PNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVN 121
           PN  T++ +V G  +       NV+  +L+     +  L  +   + +L+   CR   V+
Sbjct: 192 PNIYTFNAMVNGYCKI-----GNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVD 246

Query: 122 EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
             + +   MPQ      E +  ++I  LC +GR + A ++   M +    P++ +Y  ++
Sbjct: 247 NAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLI 306

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
           + L   G  + A  L  E  + G  P+ HTY VL++GLC E+ +++ARK+L  M  K  +
Sbjct: 307 YALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLI 366

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
                                              P V+T N +I+G+CK G I++A ++
Sbjct: 367 -----------------------------------PSVVTYNALIDGYCKEGMIDDAFEI 391

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
           L D++    C P+  T+  +I GL    ++ +A+ LL +++ +R  SP ++TYN+++ G 
Sbjct: 392 L-DLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKML-ERKLSPSLITYNSLIHGQ 449

Query: 362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
            ++  +E A  + + M   G+V D  TY++ ID LC+  +++EA   +D +       + 
Sbjct: 450 CKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANE 509

Query: 422 YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
            +Y A+I G C+ GKI  A   L  +++    PN   YNV+I+G CK    +EA  ++ +
Sbjct: 510 VIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAK 569

Query: 482 MRKNGLNPDAVTWRIL 497
           M   G+ P  VT+ IL
Sbjct: 570 MLTMGVKPTVVTYTIL 585



 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 137/532 (25%), Positives = 241/532 (45%), Gaps = 44/532 (8%)

Query: 10  VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSV 69
           + E   ++ ++ +    PN+ ++  +++GYC+ G +  A     ++   G+ P++ TY+ 
Sbjct: 175 IDEMKTVYLELLNNQISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTS 234

Query: 70  LVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAED 129
           L+ G  R + V+ A  +   + ++  +      N  ++ NL+  LC  G +NE  ++  D
Sbjct: 235 LILGHCRNKGVDNAYEVFLIMPQKGCQR-----NEVSYTNLIHGLCEAGRINEALKLFAD 289

Query: 130 MPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG 189
           M +            +I +L  SGR   A  +   M+++G  P++ +Y  ++ GLCK   
Sbjct: 290 MTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENK 349

Query: 190 CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNI 249
              A ++L E  + G +PS  TY  L++G C E  ++ A ++L  M S      TR  N 
Sbjct: 350 MDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNE 409

Query: 250 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVING--------------------- 288
            +  LC  +   + + +L  ML+ +  P +IT N++I+G                     
Sbjct: 410 LICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENG 469

Query: 289 --------------FCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEA 334
                          CK GR+EEA   L D V  K    + V +T +I G   VG+I  A
Sbjct: 470 LVPDQWTYSVFIDTLCKEGRVEEA-GTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVA 528

Query: 335 LNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVID 394
            +LL + M      P   TYN ++ GL + ++++EA  +   ML +GV     TY I+I 
Sbjct: 529 YSLL-ERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIG 587

Query: 395 GLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTP 454
            + +    D A + ++ +V      D   Y A +      G + E    + ++ + G+ P
Sbjct: 588 EMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILP 647

Query: 455 NIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK--LHGNR 504
           ++V Y V+IDG  +L +   A+  L+ M   G  P      IL K   H NR
Sbjct: 648 DLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENR 699



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 111/434 (25%), Positives = 202/434 (46%), Gaps = 24/434 (5%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   RV EA  LF  +K++G   N V YT LI GYC+ G++DVAY + + M +   
Sbjct: 481 IDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDAC 540

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           LPNS TY+VL+ G+ + + ++ A+ L+ K+         +      +  L+  + ++G  
Sbjct: 541 LPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTM-----GVKPTVVTYTILIGEMLKDGAF 595

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +   ++   M       +       + +    G       V+  M + G+ P LV+Y  +
Sbjct: 596 DHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVL 655

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G  + G   RA+  L+  +  G  PS +   +L++ L  E+ +++ R       S+  
Sbjct: 656 IDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETR-------SEIG 708

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           +D       Y  AL L +           M++  C  DV     +I GFC+  R+EEA  
Sbjct: 709 IDSVSNTLEYEIALKLFEK----------MVEHGCTIDVSIYGALIAGFCQQERLEEAQG 758

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +++ M   +  +P    + +++     +G   EA+ L+   M + G  P + +Y  ++ G
Sbjct: 759 LVHHM-KERGMSPSEDIYNSLLDCCCKLGVYAEAVRLV-DAMVENGLLPLLESYKLLVCG 816

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L+     E+AK VF+ +L  G   D   + ++IDGL + + +DE     D +       +
Sbjct: 817 LYIEGSNEKAKAVFHGLLSCGYNYDEVAWKVLIDGLLKRDLVDECSELIDIMEEKGCQPN 876

Query: 421 NYVYAAMIKGLCRS 434
              Y+ +I+GL R+
Sbjct: 877 PLTYSLLIEGLERT 890


>gi|334182516|ref|NP_172730.3| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
 gi|332190794|gb|AEE28915.1| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
          Length = 735

 Score =  213 bits (543), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 133/483 (27%), Positives = 247/483 (51%), Gaps = 42/483 (8%)

Query: 24  GHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERA 83
           G   N+ +   +I+ +CR  +   AY V  ++   G  P++ T++ L++G+     V  A
Sbjct: 118 GIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEA 177

Query: 84  NVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACG 143
            VL+ ++ E   + + ++ N+     +V+ +CR G  +    +   M +     + F   
Sbjct: 178 VVLVDRMVENGCQPDVVTYNS-----IVNGICRSGDTSLALDLLRKMEERNVKADVFTYS 232

Query: 144 HMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQF 203
            +IDSLCR G    A  +   M  +G+  S+V+YNS+V GLCK G       LL++ +  
Sbjct: 233 TIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSR 292

Query: 204 GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTEL 263
             +P+  T+ VL++    E  L++A ++ + M+++                         
Sbjct: 293 EIVPNVITFNVLLDVFVKEGKLQEANELYKEMITR------------------------- 327

Query: 264 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF 323
                        P++IT NT+++G+C   R+ EA  +L+ MV  K C+PD VTFT++I 
Sbjct: 328 ----------GISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNK-CSPDIVTFTSLIK 376

Query: 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 383
           G   V R+ + + + ++ + +RG     VTY+ +++G  +  +++ A+E+F  M+  GV+
Sbjct: 377 GYCMVKRVDDGMKV-FRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVL 435

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
            D  TY I++DGLC++ +L++A   ++D+          +Y  +I+G+C+ GK+ +A + 
Sbjct: 436 PDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNL 495

Query: 444 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGN 503
              L   GV PN++ Y V+I G CK     EA  +LR+M ++G  P+  T+  L + H  
Sbjct: 496 FCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLR 555

Query: 504 RGN 506
            G+
Sbjct: 556 DGD 558



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 105/441 (23%), Positives = 219/441 (49%), Gaps = 7/441 (1%)

Query: 24  GHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERA 83
           G+ P+  ++ TLI G    G++  A  + D M   G  P+ +TY+ +V G+ R+ D   A
Sbjct: 153 GYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLA 212

Query: 84  NVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACG 143
             L+ K+     EE ++  +   ++ ++DSLCR+G ++    + ++M      +      
Sbjct: 213 LDLLRKM-----EERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYN 267

Query: 144 HMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQF 203
            ++  LC++G+ +  + ++  M  R + P+++++N ++    K G    A +L +E I  
Sbjct: 268 SLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITR 327

Query: 204 GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTEL 263
           G  P+  TY  L++G C ++ L +A  +L  M+  K           ++  C++K   + 
Sbjct: 328 GISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDG 387

Query: 264 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF 323
           + V   + +     + +T + ++ GFC+ G+I+ A ++  +MV+     PD +T+  ++ 
Sbjct: 388 MKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGV-LPDVMTYGILLD 446

Query: 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 383
           GL + G++++AL + ++ + +     GIV Y  ++ G+ +  +VE+A  +F  +   GV 
Sbjct: 447 GLCDNGKLEKALEI-FEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVK 505

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
            +  TY ++I GLC+   L EA      +    N  ++  Y  +I+   R G +  +   
Sbjct: 506 PNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKL 565

Query: 444 LYELVDSGVTPNIVCYNVVID 464
           + E+   G + +     +VID
Sbjct: 566 IEEMKSCGFSADASSIKMVID 586



 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 115/486 (23%), Positives = 230/486 (47%), Gaps = 42/486 (8%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           +A  LF +M     +P++V ++       RT + ++      ++   G+  N  T ++++
Sbjct: 71  DAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMI 130

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP 131
               R      A  ++ K+  ++  E D       F  L+  L  EG V+E   + + M 
Sbjct: 131 NCFCRCCKTCFAYSVLGKVM-KLGYEPD----TTTFNTLIKGLFLEGKVSEAVVLVDRMV 185

Query: 132 QGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCM 191
           +     +      +++ +CRSG    A  ++  M +R +   + +Y++I+  LC+ G   
Sbjct: 186 ENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCID 245

Query: 192 RAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYL 251
            A  L +E    G   S  TY  LV GLC          +L+ M+S++ V          
Sbjct: 246 AAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIV---------- 295

Query: 252 RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC 311
                                    P+VIT N +++ F K G+++EA ++  +M+  +  
Sbjct: 296 -------------------------PNVITFNVLLDVFVKEGKLQEANELYKEMIT-RGI 329

Query: 312 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK 371
           +P+ +T+ T++ G     R+ EA N+L  +M +   SP IVT+ ++++G   ++RV++  
Sbjct: 330 SPNIITYNTLMDGYCMQNRLSEANNML-DLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGM 388

Query: 372 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 431
           +VF  +   G+VA++ TY+I++ G C+S ++  A+  + ++V    + D   Y  ++ GL
Sbjct: 389 KVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGL 448

Query: 432 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 491
           C +GK+ +A+    +L  S +   IV Y  +I+G CK     +A+ +   +   G+ P+ 
Sbjct: 449 CDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNV 508

Query: 492 VTWRIL 497
           +T+ ++
Sbjct: 509 MTYTVM 514



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 100/396 (25%), Positives = 186/396 (46%), Gaps = 42/396 (10%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    +  A  LF +M+++G   +VV+Y +L+ G C+ G+ +    +  +M    +
Sbjct: 235 IDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREI 294

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +PN +T++VL+   ++   ++ AN L  ++  R      +S N   +  L+D  C +  +
Sbjct: 295 VPNVITFNVLLDVFVKEGKLQEANELYKEMITR-----GISPNIITYNTLMDGYCMQNRL 349

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E   + + M + K   +      +I   C   R     +V   + KRGL  + V+Y+ +
Sbjct: 350 SEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSIL 409

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           V G C+ G    A +L +E +  G LP   TY +L++GLC    LEKA ++ +      D
Sbjct: 410 VQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFE------D 463

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           + ++++                                ++   T+I G CK G++E+A  
Sbjct: 464 LQKSKM-----------------------------DLGIVMYTTIIEGMCKGGKVEDAWN 494

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +   +   K   P+ +T+T +I GL   G + EA N+L + M + G +P   TYN ++R 
Sbjct: 495 LFCSLPC-KGVKPNVMTYTVMISGLCKKGSLSEA-NILLRKMEEDGNAPNDCTYNTLIRA 552

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 396
             R   +  + ++   M   G  AD+++  +VID L
Sbjct: 553 HLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDML 588



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 122/240 (50%), Gaps = 11/240 (4%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C + RV +  K+F ++  RG V N V+Y+ L+ G+C++G++ +A ++F EM   GVLP+ 
Sbjct: 379 CMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDV 438

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERM-KEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           +TY +L+ G+     +E+A     +++E + K + DL +    +  +++ +C+ G V + 
Sbjct: 439 MTYGILLDGLCDNGKLEKA----LEIFEDLQKSKMDLGI--VMYTTIIEGMCKGGKVEDA 492

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           + +   +P             MI  LC+ G    A+ ++  M + G  P+  +YN+++  
Sbjct: 493 WNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRA 552

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
             + G    + +L+EE    G+     + K++++ L         R  L++ LSK    R
Sbjct: 553 HLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDMLLS----AMKRLTLRYCLSKGSKSR 608



 Score = 47.0 bits (110), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 40/72 (55%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC    + EA+ L   M+  G+ PN  +Y TLI  + R G++  + K+ +EM+ CG   +
Sbjct: 518 LCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSAD 577

Query: 64  SLTYSVLVRGVL 75
           + +  +++  +L
Sbjct: 578 ASSIKMVIDMLL 589


>gi|359491317|ref|XP_003634263.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Vitis vinifera]
          Length = 665

 Score =  213 bits (543), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 138/505 (27%), Positives = 243/505 (48%), Gaps = 29/505 (5%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D L    R     K++ DM +RG  PNVV+Y TLI G CR G+   A+++FDEM    +
Sbjct: 165 LDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKI 224

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P  + Y++L+RG+     +  A  +      R      +  N   +  ++D  C+  +V
Sbjct: 225 FPTVVIYTILIRGLCGESRISEAESMF-----RTMRNSGMLPNLYTYNTMMDGYCKIAHV 279

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +   + ++M     +      G +ID LC++     A + +  M   G+ P++  YN +
Sbjct: 280 KKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCL 339

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G CK G    A  L  E  +   LP   TY +L++GLCG   +E+A  +LQ M  K  
Sbjct: 340 IDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGF 399

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           +      N  +   C   N  + + V   M +   +P++IT +T+I+G+CK G++E A+ 
Sbjct: 400 LPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMG 459

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +  +MV  K   PD V +T +I G    G  +EA   L++ M + G  P + T + ++ G
Sbjct: 460 LYTEMVI-KGLLPDVVAYTALIDGHFKDGNTKEAFR-LHKEMQEAGLHPNVFTLSCLIDG 517

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L +  R+ +A ++F    G       T            N+LD +      +  P+++  
Sbjct: 518 LCKDGRISDAIKLFLAKTGTDTTGSKT------------NELDRS------LCSPNHV-- 557

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
             +Y A+I+GLC  G+I +A  F  ++  SG+ P++    V+I G  +    R+   +  
Sbjct: 558 --MYTALIQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQGHFRAMHLRDVMMLQA 615

Query: 481 EMRKNGLNPDAVTWRILDKLHGNRG 505
           ++ K G+ P++  +R+L K +   G
Sbjct: 616 DILKMGIIPNSSVYRVLAKGYEESG 640



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 118/466 (25%), Positives = 223/466 (47%), Gaps = 10/466 (2%)

Query: 35  LIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS---VLVRGVLRTRDVERANVLMFKLW 91
           L H   R  ++    +++  + H  VL  +  Y+    L+R +++     R + +   ++
Sbjct: 56  LFHSVSRRADLAKNPQLYSAIIH--VLTGAKLYAKARCLMRDLIQCLQNSRRSRICCSVF 113

Query: 92  ERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCR 151
             +   E        F  L+ +    G V E   +   M    ++    AC  ++D L +
Sbjct: 114 NVLSRLESSKFTPNVFGVLIIAFSEMGLVEEALWVYYKMDVLPAMQ---ACNMVLDGLVK 170

Query: 152 SGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHT 211
            GR     +V   M  RG +P++V+Y +++ G C+ G  ++A++L +E I+    P+   
Sbjct: 171 KGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVI 230

Query: 212 YKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFML 271
           Y +L+ GLCGES + +A  + + M +   +      N  +   C I +  + L +   ML
Sbjct: 231 YTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEML 290

Query: 272 QTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRI 331
                P+V+T   +I+G CK   +  A K L DM A     P+   +  +I G    G +
Sbjct: 291 GDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDM-ASFGVVPNIFVYNCLIDGYCKAGNL 349

Query: 332 QEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAI 391
            EAL+ L+  + +    P + TY+ +++GL  + R+EEA  +   M   G + ++ TY  
Sbjct: 350 SEALS-LHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNT 408

Query: 392 VIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 451
           +IDG C+   +++A      +       +   ++ +I G C++GK+  A+    E+V  G
Sbjct: 409 LIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKG 468

Query: 452 VTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           + P++V Y  +IDG  K    +EA+++ +EM++ GL+P+  T   L
Sbjct: 469 LLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCL 514



 Score =  171 bits (434), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 128/480 (26%), Positives = 225/480 (46%), Gaps = 49/480 (10%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           ++S    PNV  +  LI  +   G ++ A  V+ +M    VLP     ++++ G+++   
Sbjct: 119 LESSKFTPNV--FGVLIIAFSEMGLVEEALWVYYKM---DVLPAMQACNMVLDGLVKKGR 173

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
            +     M+K++  M      S N   +  L+D  CR+G   + FR+ ++M + K     
Sbjct: 174 FDT----MWKVYGDMVAR-GASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTV 228

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
                +I  LC   R   A  +   MR  G+ P+L +YN+++ G CK     +A +L +E
Sbjct: 229 VIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQE 288

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
            +  G LP+  T+ +L++GLC   ++  ARK L  M S   V                  
Sbjct: 289 MLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVV------------------ 330

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
                            P++   N +I+G+CK G + EAL  L+  +      PD  T++
Sbjct: 331 -----------------PNIFVYNCLIDGYCKAGNLSEALS-LHSEIEKHEILPDVFTYS 372

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
            +I GL  V R++EA  LL Q M ++G+ P  VTYN ++ G  +   +E+A EV + M  
Sbjct: 373 ILIKGLCGVDRMEEADGLL-QEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTE 431

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
            G+  +  T++ +IDG C++ +++ A   + ++V    + D   Y A+I G  + G   E
Sbjct: 432 KGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKE 491

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
           A     E+ ++G+ PN+   + +IDG CK     +A ++   + K G +        LD+
Sbjct: 492 AFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLF--LAKTGTDTTGSKTNELDR 549



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 94/346 (27%), Positives = 170/346 (49%), Gaps = 2/346 (0%)

Query: 161 VVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLC 220
            ++V  K  + P++ + N ++ GL K G     +++  + +  G  P+  TY  L++G C
Sbjct: 145 ALWVYYKMDVLPAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCC 204

Query: 221 GESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVI 280
            + D  KA ++   M+ KK      I  I +R LC     +E  ++   M  +   P++ 
Sbjct: 205 RQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLY 264

Query: 281 TLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQ 340
           T NT+++G+CK+  +++AL++  +M+ G    P+ VTF  +I GL     +  A   L  
Sbjct: 265 TYNTMMDGYCKIAHVKKALELYQEML-GDGLLPNVVTFGILIDGLCKTDEMVSARKFLID 323

Query: 341 VMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN 400
            M   G  P I  YN ++ G  +   + EA  + + +    ++ D  TY+I+I GLC  +
Sbjct: 324 -MASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVD 382

Query: 401 QLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYN 460
           +++EA     ++     + +   Y  +I G C+ G + +A+    ++ + G+ PNI+ ++
Sbjct: 383 RMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFS 442

Query: 461 VVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
            +IDG CK      A  +  EM   GL PD V +  L   H   GN
Sbjct: 443 TLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGN 488


>gi|302754868|ref|XP_002960858.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
 gi|300171797|gb|EFJ38397.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
          Length = 699

 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 145/478 (30%), Positives = 241/478 (50%), Gaps = 14/478 (2%)

Query: 16  LFFD-MKSR-GHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRG 73
           LFFD  +SR GH  NV S    +   CR      A  +F        +PN  TY +L+RG
Sbjct: 9   LFFDWARSRVGH--NVFSCNCALDMLCRLNRRQEALALFRNAMARICMPNKFTYGILIRG 66

Query: 74  VLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQG 133
                D++ A     +L E MK       N      L+  LC  G V E       M + 
Sbjct: 67  FSSAGDLDIA----IQLLEEMK-SSGFEGNAVVHTTLMKGLCDAGRVVEALEHFRAMAK- 120

Query: 134 KSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRA 193
               +      ++ +LC++G+   A  ++  M  +G  P  V++++++ GLCK G   +A
Sbjct: 121 DCAPDVMTYTALVHALCKAGKFDEAQGMLREMVAQGCAPDTVTFSTLIDGLCKFGSEEQA 180

Query: 194 YQLLEEGIQFGYLPSEHTYKVLVEGLCGE-SDLEKARKVLQFMLSKKDVDRTRICNIYLR 252
           +++LE+ IQ G   S+  ++ +++ LC + + +E A KVL  +++K       + N+ + 
Sbjct: 181 FRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVLMFNLVIN 240

Query: 253 ALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCA 312
             C  K+      +L  M++  C P+V T   +I G CK  R+ EA ++L  MV G  C+
Sbjct: 241 GFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVMGG-CS 299

Query: 313 PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKE 372
           P+ VT++T+I GL   G++ +A   L+Q+M +R   P +VT+N ++ GL + +R+EEA++
Sbjct: 300 PNVVTYSTVINGLCKQGQVDDAYE-LFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQ 358

Query: 373 VFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV-YAAMIKGL 431
           +++ M   G   D  TY  +IDGLC+S Q+DEA + +  I        N V Y+ +  G 
Sbjct: 359 LYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGY 418

Query: 432 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNP 489
              G++ +A      LVD G +P++  Y  +I   CK S   E  +++ EM   G  P
Sbjct: 419 AALGRMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVELVEEMASKGFPP 476



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 137/499 (27%), Positives = 247/499 (49%), Gaps = 10/499 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC L+R  EA  LF +  +R  +PN  +Y  LI G+   G++D+A ++ +EM+  G 
Sbjct: 29  LDMLCRLNRRQEALALFRNAMARICMPNKFTYGILIRGFSSAGDLDIAIQLLEEMKSSGF 88

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             N++ ++ L++G+     V  A      L       +D + +   +  LV +LC+ G  
Sbjct: 89  EGNAVVHTTLMKGLCDAGRVVEA------LEHFRAMAKDCAPDVMTYTALVHALCKAGKF 142

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E   +  +M       +      +ID LC+ G    A RV+  + +RG+  S  ++ +I
Sbjct: 143 DEAQGMLREMVAQGCAPDTVTFSTLIDGLCKFGSEEQAFRVLEDVIQRGMGNSDAAFETI 202

Query: 181 VHGLC-KHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           +  LC K+     A ++L   I  G+ P+   + +++ G C   DL+ A K+L+ M+ K 
Sbjct: 203 IQRLCNKYNSVELASKVLGVVIAKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKG 262

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
            V       I +  LC      E   +L  M+   C P+V+T +TVING CK G++++A 
Sbjct: 263 CVPNVFTFTILITGLCKANRVGEAQQLLEKMVMGGCSPNVVTYSTVINGLCKQGQVDDAY 322

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           ++   ++  + C P+ VT   +I GL    RI+EA   LY  M + G +P I+TYN+++ 
Sbjct: 323 ELFQ-LMERRNCPPNVVTHNILIDGLCKAKRIEEARQ-LYHRMRETGCAPDIITYNSLID 380

Query: 360 GLFRLRRVEEAKEVFNCMLGIGV-VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
           GL +  +V+EA ++F  +   GV  A++ TY+ +  G     ++ +A R +  +V     
Sbjct: 381 GLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAALGRMADACRIFSMLVDKGFS 440

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI 478
            D   Y ++I   C++ +  E V  + E+   G  P +   + V+ G  + +    A Q+
Sbjct: 441 PDLATYTSLILEYCKTSRAVEVVELVEEMASKGFPPRVNTLSAVLGGLFEGNHTERAIQL 500

Query: 479 LREMRKNGLNPDAVTWRIL 497
              M   G   DA+ + ++
Sbjct: 501 FDSMAARGCTDDALIYNLV 519



 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 122/463 (26%), Positives = 223/463 (48%), Gaps = 46/463 (9%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC  +RVGEA +L   M   G  PNVV+Y+T+I+G C+ G++D AY++F  M      PN
Sbjct: 277 LCKANRVGEAQQLLEKMVMGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPN 336

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +T+++L+ G+ + + +E A     +L+ RM+ E   + +   + +L+D LC+   V+E 
Sbjct: 337 VVTHNILIDGLCKAKRIEEAR----QLYHRMR-ETGCAPDIITYNSLIDGLCKSFQVDEA 391

Query: 124 FRIAEDMPQ-GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
           F++ + +P+ G S         +       GR   A R+  ++  +G +P L +Y S++ 
Sbjct: 392 FQLFQTIPESGVSAANAVTYSTLFHGYAALGRMADACRIFSMLVDKGFSPDLATYTSLIL 451

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
             CK    +   +L+EE    G+ P  +T   ++ GL   +  E+A ++   M ++    
Sbjct: 452 EYCKTSRAVEVVELVEEMASKGFPPRVNTLSAVLGGLFEGNHTERAIQLFDSMAARG--- 508

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
                                           C  D +  N V+ G  +  + ++AL VL
Sbjct: 509 --------------------------------CTDDALIYNLVVEGMARASKHDKALAVL 536

Query: 303 NDMVAG---KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
             ++     KF  P +     ++  L  VG+  +A  LL++ M +RG++  + +YN +L 
Sbjct: 537 EQVIDKRDRKF-NPSSSAVDALVESLCQVGKTDDAKQLLHK-MSERGFAAAVSSYNRLLS 594

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
           GL RL+R +EA +VF  M+  G   + +T  +VI  LC + ++D+A      +       
Sbjct: 595 GLSRLQRWDEATQVFEAMVSAGPAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCP 654

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVV 462
           D      +I G C+SG+   A   L E+ ++G+ PN   ++++
Sbjct: 655 DIETCNTLIGGYCKSGRADLARKLLEEMTEAGLEPNDTTHDLL 697



 Score =  178 bits (451), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 117/489 (23%), Positives = 234/489 (47%), Gaps = 9/489 (1%)

Query: 13  AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVR 72
           A K+   + ++G  P V+ +  +I+G+C+  ++D AYK+ + M   G +PN  T+++L+ 
Sbjct: 216 ASKVLGVVIAKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILIT 275

Query: 73  GVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQ 132
           G+ +   V  A  L+ K+          S N   ++ +++ LC++G V++ + + + M +
Sbjct: 276 GLCKANRVGEAQQLLEKMVM-----GGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMER 330

Query: 133 GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMR 192
                       +ID LC++ R   A ++ + MR+ G  P +++YNS++ GLCK      
Sbjct: 331 RNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDE 390

Query: 193 AYQLLEEGIQFGYLPSEH-TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYL 251
           A+QL +   + G   +   TY  L  G      +  A ++   ++ K            +
Sbjct: 391 AFQLFQTIPESGVSAANAVTYSTLFHGYAALGRMADACRIFSMLVDKGFSPDLATYTSLI 450

Query: 252 RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC 311
              C      E++ ++  M      P V TL+ V+ G  +    E A+++ + M A + C
Sbjct: 451 LEYCKTSRAVEVVELVEEMASKGFPPRVNTLSAVLGGLFEGNHTERAIQLFDSM-AARGC 509

Query: 312 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG--YSPGIVTYNAVLRGLFRLRRVEE 369
             DA+ +  ++ G+    +  +AL +L QV+ +R   ++P     +A++  L ++ + ++
Sbjct: 510 TDDALIYNLVVEGMARASKHDKALAVLEQVIDKRDRKFNPSSSAVDALVESLCQVGKTDD 569

Query: 370 AKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIK 429
           AK++ + M   G  A  ++Y  ++ GL    + DEA + ++ +V      +      +I 
Sbjct: 570 AKQLLHKMSERGFAAAVSSYNRLLSGLSRLQRWDEATQVFEAMVSAGPAPEISTVNVVIS 629

Query: 430 GLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNP 489
            LC + K+ +A   +  +   G  P+I   N +I G CK      A ++L EM + GL P
Sbjct: 630 WLCSAAKVDDAYELVQRMSKLGCCPDIETCNTLIGGYCKSGRADLARKLLEEMTEAGLEP 689

Query: 490 DAVTWRILD 498
           +  T  +L+
Sbjct: 690 NDTTHDLLE 698



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 103/358 (28%), Positives = 175/358 (48%), Gaps = 2/358 (0%)

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
           F+C   +D LCR  R   A  +      R   P+  +Y  ++ G    G    A QLLEE
Sbjct: 23  FSCNCALDMLCRLNRRQEALALFRNAMARICMPNKFTYGILIRGFSSAGDLDIAIQLLEE 82

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
               G+  +   +  L++GLC    + +A +  + M +K            + ALC    
Sbjct: 83  MKSSGFEGNAVVHTTLMKGLCDAGRVVEALEHFRAM-AKDCAPDVMTYTALVHALCKAGK 141

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
             E   +L  M+   C PD +T +T+I+G CK G  E+A +VL D++       DA  F 
Sbjct: 142 FDEAQGMLREMVAQGCAPDTVTFSTLIDGLCKFGSEEQAFRVLEDVIQRGMGNSDAA-FE 200

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
           TII  L N     E  + +  V+  +G++P ++ +N V+ G  + + ++ A ++   M+ 
Sbjct: 201 TIIQRLCNKYNSVELASKVLGVVIAKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIE 260

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
            G V +  T+ I+I GLC++N++ EA++  + +V      +   Y+ +I GLC+ G++ +
Sbjct: 261 KGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVMGGCSPNVVTYSTVINGLCKQGQVDD 320

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           A      +      PN+V +N++IDG CK     EA Q+   MR+ G  PD +T+  L
Sbjct: 321 AYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSL 378



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 123/533 (23%), Positives = 236/533 (44%), Gaps = 80/533 (15%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEM-------- 55
           LC   +  EA  +  +M ++G  P+ V+++TLI G C+ G  + A++V +++        
Sbjct: 136 LCKAGKFDEAQGMLREMVAQGCAPDTVTFSTLIDGLCKFGSEEQAFRVLEDVIQRGMGNS 195

Query: 56  ---------RHC-------------------GVLPNSLTYSVLVRGVLRTRDVERANVLM 87
                    R C                   G  P  L +++++ G  + +D++ A    
Sbjct: 196 DAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVLMFNLVINGFCKAKDLDSA---- 251

Query: 88  FKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMID 147
           +KL E M E+  +  N   F  L+  LC+   V E  ++ E M  G           +I+
Sbjct: 252 YKLLEVMIEKGCVP-NVFTFTILITGLCKANRVGEAQQLLEKMVMGGCSPNVVTYSTVIN 310

Query: 148 SLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLP 207
            LC+ G+   A  +  +M +R   P++V++N ++ GLCK      A QL     + G  P
Sbjct: 311 GLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAP 370

Query: 208 SEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVL 267
              TY  L++GLC    +++A ++ Q +                        P   ++  
Sbjct: 371 DIITYNSLIDGLCKSFQVDEAFQLFQTI------------------------PESGVSA- 405

Query: 268 VFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLN 327
                     + +T +T+ +G+  +GR+ +A ++ + +V   F +PD  T+T++I     
Sbjct: 406 ---------ANAVTYSTLFHGYAALGRMADACRIFSMLVDKGF-SPDLATYTSLILEYCK 455

Query: 328 VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADST 387
             R    +  L + M  +G+ P + T +AVL GLF     E A ++F+ M   G   D+ 
Sbjct: 456 TSR-AVEVVELVEEMASKGFPPRVNTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDAL 514

Query: 388 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYA---AMIKGLCRSGKIHEAVHFL 444
            Y +V++G+  +++ D+A    + ++   +   N   +   A+++ LC+ GK  +A   L
Sbjct: 515 IYNLVVEGMARASKHDKALAVLEQVIDKRDRKFNPSSSAVDALVESLCQVGKTDDAKQLL 574

Query: 445 YELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           +++ + G    +  YN ++ G  +L    EA Q+   M   G  P+  T  ++
Sbjct: 575 HKMSERGFAAAVSSYNRLLSGLSRLQRWDEATQVFEAMVSAGPAPEISTVNVV 627


>gi|222636287|gb|EEE66419.1| hypothetical protein OsJ_22769 [Oryza sativa Japonica Group]
          Length = 1393

 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 146/495 (29%), Positives = 240/495 (48%), Gaps = 14/495 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C  +R   A +L   +  RG     V+Y T++ G    G    A ++FD+M H  V PN
Sbjct: 130 FCLTARPHIALRLLRALPHRG----AVAYCTVVCGLYAHGHTHDARQLFDQMLHTHVFPN 185

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
              ++ ++  + +  DV  A +L+ K+ +R      +S+N   +   +  LC  G + E 
Sbjct: 186 LAAFNKVLHALCKRGDVLEAGLLLGKVIQR-----GMSINLFTYNIWIRGLCEAGRLPEA 240

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            R+ + M +  +V +      +I  LC+      A   +  M  +G  P   +YN+I+ G
Sbjct: 241 VRLVDGM-RAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDG 299

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK      A +LL++ +  G++P + TY  L+ GLC E D+E+A ++     +K     
Sbjct: 300 YCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPD 359

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
             + N  ++ LCL       L V+  M +  C PD+ T N VING CKMG I +A  V+N
Sbjct: 360 IVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMN 419

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           D +   +  PD  TF T+I G     ++  AL L+ + M + G +P  +TYN+VL GL +
Sbjct: 420 DAIMKGYL-PDVFTFNTLIDGYCKRLKLDSALQLV-ERMWEYGIAPDTITYNSVLNGLCK 477

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
             +V E  E F  M+  G   +  TY I+I+  C SN+++EA +    +       D   
Sbjct: 478 AGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVS 537

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDG-ACKLSMKREAYQILREM 482
           +  +I G CR+G +  A     +L + G +     +N +I   + KL+M   A +I  EM
Sbjct: 538 FNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHM-AEKIFDEM 596

Query: 483 RKNGLNPDAVTWRIL 497
              G   D+ T+R+L
Sbjct: 597 LSKGHRADSYTYRVL 611



 Score =  191 bits (486), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 129/455 (28%), Positives = 221/455 (48%), Gaps = 10/455 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R+ EA +L   M++   VP+VV+Y TLI G C+      A      M + G LP+
Sbjct: 231 LCEAGRLPEAVRLVDGMRAYA-VPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPD 289

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             TY+ ++ G  +   V+ A  L+     +    +    +   + +L++ LC EG V   
Sbjct: 290 DFTYNTIIDGYCKISMVQEATELL-----KDAVFKGFVPDQVTYCSLINGLCAEGDVERA 344

Query: 124 FRIAEDMPQGKSVNEEFAC-GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
             +  +  Q K +  +      ++  LC  G    A +V+  M + G  P + +YN +++
Sbjct: 345 LELFNEA-QAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVIN 403

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           GLCK G    A  ++ + I  GYLP   T+  L++G C    L+ A ++++ M       
Sbjct: 404 GLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAP 463

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
            T   N  L  LC      E+      M+   C P+ IT N +I  FC+  ++EEA KV+
Sbjct: 464 DTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVI 523

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
             M + +   PDAV+F T+I+G    G ++ A  LL+Q + ++GYS    T+N ++    
Sbjct: 524 VKM-SQEGLHPDAVSFNTLIYGFCRNGDLEGAY-LLFQKLEEKGYSATADTFNTLIGAFS 581

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
               +  A+++F+ ML  G  ADS TY ++IDG C++  +D A     +++    I    
Sbjct: 582 GKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMS 641

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIV 457
            +  +I  L  + ++ +AV  ++ +V  GV P +V
Sbjct: 642 TFGRVINSLTVNHRVFQAVGIIHIMVKIGVVPEVV 676



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 96/354 (27%), Positives = 164/354 (46%), Gaps = 11/354 (3%)

Query: 146 IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY 205
           I +  R+GR   A      M      P+  +YN+I+  L       +A+++    +  G 
Sbjct: 57  IRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGV 116

Query: 206 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR-TRICNIYLRALCLIKNPTELL 264
            P  HT+ + +   C  +    A ++L+ +  +  V   T +C +Y        +  +  
Sbjct: 117 SPDLHTHTIRLRSFCLTARPHIALRLLRALPHRGAVAYCTVVCGLYAHG-----HTHDAR 171

Query: 265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 324
            +   ML T   P++   N V++  CK G + EA  +L  ++  +  + +  T+   I G
Sbjct: 172 QLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQ-RGMSINLFTYNIWIRG 230

Query: 325 LLNVGRIQEALNLLYQVMPQRGYS-PGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 383
           L   GR+ EA+ L   V   R Y+ P +VTYN ++RGL +    +EA      M+  G +
Sbjct: 231 LCEAGRLPEAVRL---VDGMRAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCL 287

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
            D  TY  +IDG C+ + + EA     D V+   + D   Y ++I GLC  G +  A+  
Sbjct: 288 PDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALEL 347

Query: 444 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
             E    G+ P+IV YN ++ G C   +   A Q++ EM + G +PD  T+ I+
Sbjct: 348 FNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIV 401



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 92/357 (25%), Positives = 153/357 (42%), Gaps = 10/357 (2%)

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVS--YNSIVHGLCKHGGCMRAYQLLEEGIQ 202
           +I  L  +GR       V   R R L+P+ +   Y + +    + G    A    E    
Sbjct: 20  LIRPLASAGRVDAVDAAVASARSR-LSPATIHPLYVASIRAYARAGRLRDAVDAFERMDL 78

Query: 203 FGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTE 262
           F   P+   Y  +++ L   +  ++A KV   ML+           I LR+ CL   P  
Sbjct: 79  FACPPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGVSPDLHTHTIRLRSFCLTARP-- 136

Query: 263 LLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTII 322
             ++ + +L+       +   TV+ G    G   +A ++ + M+      P+   F  ++
Sbjct: 137 --HIALRLLRALPHRGAVAYCTVVCGLYAHGHTHDARQLFDQMLH-THVFPNLAAFNKVL 193

Query: 323 FGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGV 382
             L   G + EA  LL +V+ QRG S  + TYN  +RGL    R+ EA  + + M    V
Sbjct: 194 HALCKRGDVLEAGLLLGKVI-QRGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYAV 252

Query: 383 VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVH 442
             D  TY  +I GLC+ +   EA  +   ++    + D++ Y  +I G C+   + EA  
Sbjct: 253 -PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATE 311

Query: 443 FLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
            L + V  G  P+ V Y  +I+G C       A ++  E +  G+ PD V +  L K
Sbjct: 312 LLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVK 368



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 103/207 (49%), Gaps = 5/207 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   +V E ++ F +M  +G  PN ++Y  LI  +CR+ +M+ A KV  +M   G+
Sbjct: 472 LNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGL 531

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P++++++ L+ G  R  D+E A +L  KL     EE+  S     F  L+ +   +  +
Sbjct: 532 HPDAVSFNTLIYGFCRNGDLEGAYLLFQKL-----EEKGYSATADTFNTLIGAFSGKLNM 586

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +   +I ++M       + +    +ID  C++     A   +  M K+G  PS+ ++  +
Sbjct: 587 HMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRV 646

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLP 207
           ++ L  +    +A  ++   ++ G +P
Sbjct: 647 INSLTVNHRVFQAVGIIHIMVKIGVVP 673


>gi|15221674|ref|NP_176496.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169918|sp|Q9CAN5.1|PPR98_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63080, mitochondrial; Flags: Precursor
 gi|12323262|gb|AAG51614.1|AC010795_18 unknown protein; 41955-40111 [Arabidopsis thaliana]
 gi|332195930|gb|AEE34051.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 614

 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 134/506 (26%), Positives = 244/506 (48%), Gaps = 48/506 (9%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC  S++  A  +   M   G+ P++V+  +L++G+C    +  A  + D+M   G  P+
Sbjct: 110 LCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPD 169

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKE---EEDLSVNNAAFANLVDSLCREGYV 120
           ++T++ LV G+ +      A  L+    ERM     + DL      +  +++ LC+ G  
Sbjct: 170 TVTFTTLVHGLFQHNKASEAVALV----ERMVVKGCQPDL----VTYGAVINGLCKRGEP 221

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +    +   M +GK   +      +IDSLC+      A  +   M  +G+ P + +Y+S+
Sbjct: 222 DLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSL 281

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +  LC +G    A +LL + ++    P+  T+  L++    E  L +A K+   M+    
Sbjct: 282 ISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMI---- 337

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                          Q    P+++T N++INGFC   R++EA +
Sbjct: 338 -------------------------------QRSIDPNIVTYNSLINGFCMHDRLDEAQQ 366

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +   MV+ K C PD VT+ T+I G     ++ + + L ++ M +RG     VTY  ++ G
Sbjct: 367 IFTLMVS-KDCLPDVVTYNTLINGFCKAKKVVDGMEL-FRDMSRRGLVGNTVTYTTLIHG 424

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
            F+    + A+ VF  M+  GV  +  TY  ++DGLC++ +L++A   ++ +       D
Sbjct: 425 FFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPD 484

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
            Y Y  M +G+C++GK+ +       L   GV P+++ YN +I G CK  +K EAY +  
Sbjct: 485 IYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFI 544

Query: 481 EMRKNGLNPDAVTWRILDKLHGNRGN 506
           +M+++G  PD+ T+  L + H   G+
Sbjct: 545 KMKEDGPLPDSGTYNTLIRAHLRDGD 570



 Score =  204 bits (520), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 134/505 (26%), Positives = 244/505 (48%), Gaps = 43/505 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C  +R+ EA  L   M   G+ P+ V++TTL+HG  +  +   A  + + M   G 
Sbjct: 142 LNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGC 201

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TY  ++ G+ +  + + A  L+ K+ E+ K E D+ +    ++ ++DSLC+  +V
Sbjct: 202 QPDLVTYGAVINGLCKRGEPDLALNLLNKM-EKGKIEADVVI----YSTVIDSLCKYRHV 256

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           ++   +  +M       + F    +I  LC  GR   ASR++  M +R + P++V++NS+
Sbjct: 257 DDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSL 316

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +    K G  + A +L +E IQ    P+  TY  L+ G C    L++A+++   M+SK  
Sbjct: 317 IDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSK-- 374

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                             C PDV+T NT+INGFCK  ++ + ++
Sbjct: 375 ---------------------------------DCLPDVVTYNTLINGFCKAKKVVDGME 401

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +  DM + +    + VT+TT+I G         A  ++++ M   G  P I+TYN +L G
Sbjct: 402 LFRDM-SRRGLVGNTVTYTTLIHGFFQASDCDNA-QMVFKQMVSDGVHPNIMTYNTLLDG 459

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L +  ++E+A  VF  +    +  D  TY I+ +G+C++ ++++    +  +       D
Sbjct: 460 LCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPD 519

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              Y  MI G C+ G   EA     ++ + G  P+   YN +I    +   K  + ++++
Sbjct: 520 VIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIK 579

Query: 481 EMRKNGLNPDAVTWRIL-DKLHGNR 504
           EMR      DA T+ ++ D LH  R
Sbjct: 580 EMRSCRFAGDASTYGLVTDMLHDGR 604



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 100/220 (45%), Gaps = 3/220 (1%)

Query: 294 RIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVT 353
           +++EA+ +  +MV  +   P  V F+ ++  +  + +    ++   + M   G S  + T
Sbjct: 45  KLDEAVDLFGEMVKSR-PFPSIVEFSKLLSAIAKMKKFDLVISF-GEKMEILGVSHNLYT 102

Query: 354 YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413
           YN ++  L R  ++  A  +   M+ +G      T   +++G C  N++ EA    D +V
Sbjct: 103 YNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMV 162

Query: 414 WPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKR 473
                 D   +  ++ GL +  K  EAV  +  +V  G  P++V Y  VI+G CK     
Sbjct: 163 EMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPD 222

Query: 474 EAYQILREMRKNGLNPDAVTWR-ILDKLHGNRGNDFGLRI 512
            A  +L +M K  +  D V +  ++D L   R  D  L +
Sbjct: 223 LALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNL 262


>gi|8493575|gb|AAF75798.1|AC011000_1 Contains multiple PPR Repeats PF|01535 [Arabidopsis thaliana]
          Length = 514

 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 132/487 (27%), Positives = 239/487 (49%), Gaps = 18/487 (3%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M   G   NVV++TTL++G CR G +  A  + D M   G  P+++TY  +V G+ +  D
Sbjct: 1   MVETGCPANVVTFTTLMNGLCREGRVLQALALVDRMVEEGHQPDAVTYGTIVNGMCKLGD 60

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
              A  ++ K+     +E  +  N   ++ +VD LC++G   +   I  +M +       
Sbjct: 61  TVSALNMLRKM-----DESQIKANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKGIFPNV 115

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
                MID  C  G+   A +++  M +R + P +V+++++++   K G    A +L  E
Sbjct: 116 LTYNCMIDGYCSYGKWSDAEQLLRDMIERNIDPDVVTFSALINAFVKEGKVSGAEELYRE 175

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALC---- 255
            ++    P+  TY  +++G C  S LE A+ +   M+SK         N  +   C    
Sbjct: 176 MLRRNIFPTTITYSSMIDGFCKHSRLEDAKHMFDLMVSKGCSPDIITLNTLIDGCCRAKR 235

Query: 256 -LIKNPTELLNVLVF------MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 308
            LI    ++ NV V       M+     PD++T NT++ G C+ G++E+AL++       
Sbjct: 236 HLIHGFCQVGNVNVAQDLFQEMISNGVSPDIVTCNTLLAGLCENGKLEKALEMFKVFQKS 295

Query: 309 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE 368
           K    D  T   II G+    ++ EA +L +  +P  G    +VTYN ++    +     
Sbjct: 296 KM-DLDTATCNIIINGMCKGNKVDEAWDL-FNSLPVNGVETDVVTYNILIGVFVKEGNFL 353

Query: 369 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI 428
            A++++  ML  G++  + TY  ++DG C+ N+L+EA++  D +V      D   ++ +I
Sbjct: 354 RAEDIYLEMLCKGIIPSTVTYNSMVDGFCKQNRLEEARQMVDSMVSEGCSPDVVTFSTLI 413

Query: 429 KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLN 488
           KG C++G++ + +    E+   G+  + + YN +I G CK+     A  I  EM  +G+ 
Sbjct: 414 KGYCKAGRVDDGLELFSEMCQRGLVADTITYNALIHGFCKVGDLNGAQDIFEEMVSSGVC 473

Query: 489 PDAVTWR 495
           PD +T+R
Sbjct: 474 PDTITFR 480



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 92/353 (26%), Positives = 174/353 (49%), Gaps = 13/353 (3%)

Query: 165 MRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESD 224
           M + G   ++V++ ++++GLC+ G  ++A  L++  ++ G+ P   TY  +V G+C   D
Sbjct: 1   MVETGCPANVVTFTTLMNGLCREGRVLQALALVDRMVEEGHQPDAVTYGTIVNGMCKLGD 60

Query: 225 LEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNT 284
              A  +L+ M   +      I +  +  LC   N  +  N+   M +    P+V+T N 
Sbjct: 61  TVSALNMLRKMDESQIKANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKGIFPNVLTYNC 120

Query: 285 VINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ 344
           +I+G+C  G+  +A ++L DM+      PD VTF+ +I   +  G++  A  L Y+ M +
Sbjct: 121 MIDGYCSYGKWSDAEQLLRDMIERNI-DPDVVTFSALINAFVKEGKVSGAEEL-YREMLR 178

Query: 345 RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG--------- 395
           R   P  +TY++++ G  +  R+E+AK +F+ M+  G   D  T   +IDG         
Sbjct: 179 RNIFPTTITYSSMIDGFCKHSRLEDAKHMFDLMVSKGCSPDIITLNTLIDGCCRAKRHLI 238

Query: 396 --LCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVT 453
              C+   ++ A+  + +++      D      ++ GLC +GK+ +A+        S + 
Sbjct: 239 HGFCQVGNVNVAQDLFQEMISNGVSPDIVTCNTLLAGLCENGKLEKALEMFKVFQKSKMD 298

Query: 454 PNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
            +    N++I+G CK +   EA+ +   +  NG+  D VT+ IL  +    GN
Sbjct: 299 LDTATCNIIINGMCKGNKVDEAWDLFNSLPVNGVETDVVTYNILIGVFVKEGN 351



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 61/269 (22%), Positives = 122/269 (45%), Gaps = 32/269 (11%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C +  V  A  LF +M S G  P++V+  TL+ G C  G+++ A ++F   +   +  +
Sbjct: 241 FCQVGNVNVAQDLFQEMISNGVSPDIVTCNTLLAGLCENGKLEKALEMFKVFQKSKMDLD 300

Query: 64  SLTYSVLVRGVLRTRDVERA-------------------NVLM--FKLWERMKEEEDLSV 102
           + T ++++ G+ +   V+ A                   N+L+  F         ED+ +
Sbjct: 301 TATCNIIINGMCKGNKVDEAWDLFNSLPVNGVETDVVTYNILIGVFVKEGNFLRAEDIYL 360

Query: 103 ---------NNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSG 153
                    +   + ++VD  C++  + E  ++ + M       +      +I   C++G
Sbjct: 361 EMLCKGIIPSTVTYNSMVDGFCKQNRLEEARQMVDSMVSEGCSPDVVTFSTLIKGYCKAG 420

Query: 154 RNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYK 213
           R      +   M +RGL    ++YN+++HG CK G    A  + EE +  G  P   T++
Sbjct: 421 RVDDGLELFSEMCQRGLVADTITYNALIHGFCKVGDLNGAQDIFEEMVSSGVCPDTITFR 480

Query: 214 VLVEGLCGESDLEKARKVLQFMLSKKDVD 242
            ++ GLC +++L+K   +L+ +  +K VD
Sbjct: 481 SMLAGLCTKAELQKGLTMLEDL--QKSVD 507



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 55/93 (59%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C   RV +  +LF +M  RG V + ++Y  LIHG+C+ G+++ A  +F+EM   GV P++
Sbjct: 417 CKAGRVDDGLELFSEMCQRGLVADTITYNALIHGFCKVGDLNGAQDIFEEMVSSGVCPDT 476

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEE 97
           +T+  ++ G+    ++++   ++  L + +  E
Sbjct: 477 ITFRSMLAGLCTKAELQKGLTMLEDLQKSVDHE 509


>gi|119638441|gb|ABL85032.1| auxin efflux carrier [Brachypodium sylvaticum]
          Length = 895

 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 140/498 (28%), Positives = 238/498 (47%), Gaps = 17/498 (3%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C       A K+F +M+ R    N V+Y  +I G CR+G ++ A+   +EM   G+ P++
Sbjct: 254 CKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDA 313

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
            TY  L+ G+ +   ++ A  L+ ++         L  N   +  LVD   +EG   E F
Sbjct: 314 FTYGALMNGLCKGSRLKEAKALLDEM-----SCSGLKPNIVVYGTLVDGFMKEGKTAEAF 368

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
            I ++M        +    ++I  LC+ G+   AS+++  M K GL P   +YN ++ G 
Sbjct: 369 DILKEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLKEMIKVGLRPDTFTYNPLMQGH 428

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
            +      A++LL E    G LP+ ++Y +++ GLC   + ++A  +L+ M+S+      
Sbjct: 429 FQQHDKDGAFELLNEMRNSGILPNVYSYGIMINGLCQNGESKEAGNLLEEMISE-----G 483

Query: 245 RICNIYLRALCLIKNPTE-----LLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
              N ++ A  +I +  E         L  M +    PD+   N++I G   +GR+EEA 
Sbjct: 484 LKPNAFMYAPLIIGHSKEGNISLACEALEKMTKANVHPDLFCYNSLIKGLSTVGRMEEAE 543

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           +     V  +   PD  T++ +I G    G +++A  LL Q++   G  P   TY  +L 
Sbjct: 544 EYYA-QVQKRGLVPDEFTYSGLIHGYCKTGNLEKADQLLRQML-NSGLKPNADTYTDLLE 601

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
           G F+    E+   +   MLG G   D+  Y IVI  L  S  ++ A     ++     + 
Sbjct: 602 GYFKSNDYEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVP 661

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           D ++Y+++I GLC+   + +AV  L E+   G+ P IVCYN +IDG C+      A  + 
Sbjct: 662 DLHIYSSLISGLCKIADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVF 721

Query: 480 REMRKNGLNPDAVTWRIL 497
             +   GL P+ VT+  L
Sbjct: 722 DSILAKGLVPNCVTYTAL 739



 Score =  198 bits (503), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 128/489 (26%), Positives = 237/489 (48%), Gaps = 8/489 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC + ++G A KL  +M   G  P+  +Y  L+ G+ +  + D A+++ +EMR+ G+LPN
Sbjct: 393 LCKIGQLGRASKLLKEMIKVGLRPDTFTYNPLMQGHFQQHDKDGAFELLNEMRNSGILPN 452

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             +Y +++ G+ +  + + A  L+ ++       E L  N   +A L+    +EG ++  
Sbjct: 453 VYSYGIMINGLCQNGESKEAGNLLEEMIS-----EGLKPNAFMYAPLIIGHSKEGNISLA 507

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
               E M +     + F    +I  L   GR   A      ++KRGL P   +Y+ ++HG
Sbjct: 508 CEALEKMTKANVHPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSGLIHG 567

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK G   +A QLL + +  G  P+  TY  L+EG    +D EK   +LQ ML   D   
Sbjct: 568 YCKTGNLEKADQLLRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSILQSMLGSGDKPD 627

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
             I  I +R L   +N      VL  + +    PD+   +++I+G CK+  +E+A+ +L+
Sbjct: 628 NHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKIADMEKAVGLLD 687

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           +M A +   P  V +  +I G    G I  A N+   ++  +G  P  VTY A++ G  +
Sbjct: 688 EM-AKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSIL-AKGLVPNCVTYTALIDGNCK 745

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
              + +A +++  ML  G+  D+  Y ++  G  ++  L++A  F  + ++     +  +
Sbjct: 746 NGDITDAFDLYKEMLDRGIAPDAFVYNVLATGCSDAADLEQA-LFLTEEMFNRGYANVSL 804

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           +  ++ G C+ GK+ E    L+ ++D  + PN      V+    K     EA+++  E++
Sbjct: 805 FNTLVHGFCKRGKLQETEKLLHVMMDREIVPNAQTVEKVVSEFGKAGKLGEAHRVFAELQ 864

Query: 484 KNGLNPDAV 492
           +   +  A 
Sbjct: 865 QKKASQSAT 873



 Score =  191 bits (485), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 135/522 (25%), Positives = 234/522 (44%), Gaps = 40/522 (7%)

Query: 10  VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSV 69
           V  A ++   M   G  P       L+    R   M++ +K+   M   G+LP+  TYS 
Sbjct: 189 VRNAAQVVLMMADLGLAPTRRCCNGLLKDLLRADAMELLWKLKGFMEGAGILPDVYTYST 248

Query: 70  LVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAED 129
            +    + RD + A     K++E M+   D ++N   +  ++  LCR G V E F   E+
Sbjct: 249 FIEAHCKARDFDAAK----KVFEEMR-RRDCAMNEVTYNVMISGLCRSGAVEEAFGFKEE 303

Query: 130 MPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG 189
           M       + F  G +++ LC+  R   A  ++  M   GL P++V Y ++V G  K G 
Sbjct: 304 MVDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDEMSCSGLKPNIVVYGTLVDGFMKEGK 363

Query: 190 CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNI 249
              A+ +L+E I  G  P++  Y  L+ GLC    L +A K+L+ M+       T   N 
Sbjct: 364 TAEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLKEMIKVGLRPDTFTYNP 423

Query: 250 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK 309
            ++      +      +L  M  +   P+V +   +ING C+ G  +EA  +L +M++  
Sbjct: 424 LMQGHFQQHDKDGAFELLNEMRNSGILPNVYSYGIMINGLCQNGESKEAGNLLEEMISEG 483

Query: 310 F----------------------------------CAPDAVTFTTIIFGLLNVGRIQEAL 335
                                                PD   + ++I GL  VGR++EA 
Sbjct: 484 LKPNAFMYAPLIIGHSKEGNISLACEALEKMTKANVHPDLFCYNSLIKGLSTVGRMEEAE 543

Query: 336 NLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG 395
               QV  +RG  P   TY+ ++ G  +   +E+A ++   ML  G+  ++ TY  +++G
Sbjct: 544 EYYAQVQ-KRGLVPDEFTYSGLIHGYCKTGNLEKADQLLRQMLNSGLKPNADTYTDLLEG 602

Query: 396 LCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN 455
             +SN  ++       ++   +  DN++Y  +I+ L RS  +  A   L E+  +G+ P+
Sbjct: 603 YFKSNDYEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPD 662

Query: 456 IVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           +  Y+ +I G CK++   +A  +L EM K GL P  V +  L
Sbjct: 663 LHIYSSLISGLCKIADMEKAVGLLDEMAKEGLEPGIVCYNAL 704



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 120/484 (24%), Positives = 215/484 (44%), Gaps = 79/484 (16%)

Query: 19  DMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTR 78
           D +SR   P+      L+  Y +TG +  A +V   M   G+ P     + L++ +LR  
Sbjct: 163 DHRSRSPSPSTAVLDVLVDTYKKTGSVRNAAQVVLMMADLGLAPTRRCCNGLLKDLLRAD 222

Query: 79  DVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNE 138
            +E    L++KL   M E   +  +   ++  +++ C+          A D    K V E
Sbjct: 223 AME----LLWKLKGFM-EGAGILPDVYTYSTFIEAHCK----------ARDFDAAKKVFE 267

Query: 139 EFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLE 198
           E                         MR+R    + V+YN ++ GLC+ G    A+   E
Sbjct: 268 E-------------------------MRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFKE 302

Query: 199 EGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIK 258
           E + +G  P   TY  L+ GLC  S L++A+ +L  M                       
Sbjct: 303 EMVDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDEMSC--------------------- 341

Query: 259 NPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTF 318
                         +  +P+++   T+++GF K G+  EA  +L +M++     P+ + +
Sbjct: 342 --------------SGLKPNIVVYGTLVDGFMKEGKTAEAFDILKEMISAG-VQPNKIMY 386

Query: 319 TTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCML 378
             +I GL  +G++  A  LL + M + G  P   TYN +++G F+    + A E+ N M 
Sbjct: 387 DNLIRGLCKIGQLGRASKLLKE-MIKVGLRPDTFTYNPLMQGHFQQHDKDGAFELLNEMR 445

Query: 379 GIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIH 438
             G++ +  +Y I+I+GLC++ +  EA    ++++      + ++YA +I G  + G I 
Sbjct: 446 NSGILPNVYSYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGNIS 505

Query: 439 EAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILD 498
            A   L ++  + V P++ CYN +I G   +    EA +   +++K GL PD  T+  L 
Sbjct: 506 LACEALEKMTKANVHPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSGL- 564

Query: 499 KLHG 502
            +HG
Sbjct: 565 -IHG 567



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 85/181 (46%), Gaps = 6/181 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C    +  A  +F  + ++G VPN V+YT LI G C+ G++  A+ ++ EM   G+
Sbjct: 705 IDGFCRSGDISRARNVFDSILAKGLVPNCVTYTALIDGNCKNGDITDAFDLYKEMLDRGI 764

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P++  Y+VL  G     D+E+A  L  +++ R         N + F  LV   C+ G +
Sbjct: 765 APDAFVYNVLATGCSDAADLEQALFLTEEMFNRG------YANVSLFNTLVHGFCKRGKL 818

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E  ++   M   + V        ++    ++G+   A RV   ++++  + S     S+
Sbjct: 819 QETEKLLHVMMDREIVPNAQTVEKVVSEFGKAGKLGEAHRVFAELQQKKASQSATDRFSL 878

Query: 181 V 181
           +
Sbjct: 879 L 879


>gi|242069957|ref|XP_002450255.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
 gi|241936098|gb|EES09243.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
          Length = 924

 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 138/497 (27%), Positives = 243/497 (48%), Gaps = 7/497 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    V  A  +F  M  +G  PN V+Y T+I G C+  E+D+A  VF +M   GV
Sbjct: 232 IDGLCKAQEVDRAEDVFQQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGV 291

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+++TY+ ++ G+ + + V+RA  +  ++ +R  + + ++ N      ++D LC+   +
Sbjct: 292 KPSNVTYNTIIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNT-----IIDGLCKAQAI 346

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           ++   + + M       +      +ID LC++     A  V   M  +G+ P+  +YN +
Sbjct: 347 DKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCL 406

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +HG    G      Q ++E       P   TY +L++ LC      +AR +   M+ K  
Sbjct: 407 IHGYLSTGQWEEVVQRIKEMSAHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGI 466

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                I  I L         +E+ ++L  M+     P+    NTVI  + K   I+E + 
Sbjct: 467 KPSVTIYGIMLHGYGKKGALSEMHDLLNLMVANGISPNHRIFNTVICAYAKRAMIDEVMH 526

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +   M   +  +P+ VT+ T+I  L  +GR+ +A+ L +  M   G +P  V +N+++ G
Sbjct: 527 IFIKM-KQQGLSPNVVTYGTLIDALCKLGRVDDAV-LQFNQMINEGVTPNNVVFNSLVYG 584

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L  + + E+ +E+F  ML  G+  D   +  V+  LC+  ++ EA+R  D +V      D
Sbjct: 585 LCTVDKWEKVEELFLEMLNQGIRPDIVFFNTVLCNLCKEGRVMEARRLIDSMVCMGLKPD 644

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              Y  +I G C + ++ EAV  L  +V +G+ PNIV YN ++ G CK      AY + R
Sbjct: 645 VISYNTLIDGHCFASRMDEAVKLLDGMVSAGLKPNIVSYNTLLHGYCKAGRIDNAYCLFR 704

Query: 481 EMRKNGLNPDAVTWRIL 497
           EM + G+ P   T+  +
Sbjct: 705 EMLRKGVTPGVETYNTI 721



 Score =  210 bits (535), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 144/534 (26%), Positives = 251/534 (47%), Gaps = 46/534 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    V  A  +F  M  RG  P+ V+Y T+I G C+   +D A  VF +M   GV
Sbjct: 302 IDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGV 361

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P++LTY++++ G+ + + V+RA  +  ++ ++      +  NN  +  L+      G  
Sbjct: 362 KPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDK-----GVKPNNGTYNCLIHGYLSTGQW 416

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            EV +  ++M       + F  G ++D LC++G+ + A  +   M ++G+ PS+  Y  +
Sbjct: 417 EEVVQRIKEMSAHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIM 476

Query: 181 VHGLCKHGGCMRAYQLLE----EGI-------------------------------QFGY 205
           +HG  K G     + LL      GI                               Q G 
Sbjct: 477 LHGYGKKGALSEMHDLLNLMVANGISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGL 536

Query: 206 LPSEHTYKVLVEGLCGESDLEKARKVLQF--MLSKKDVDRTRICNIYLRALCLIKNPTEL 263
            P+  TY  L++ LC    ++ A  VLQF  M+++       + N  +  LC +    ++
Sbjct: 537 SPNVVTYGTLIDALCKLGRVDDA--VLQFNQMINEGVTPNNVVFNSLVYGLCTVDKWEKV 594

Query: 264 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF 323
             + + ML    +PD++  NTV+   CK GR+ EA ++++ MV      PD +++ T+I 
Sbjct: 595 EELFLEMLNQGIRPDIVFFNTVLCNLCKEGRVMEARRLIDSMVCMGL-KPDVISYNTLID 653

Query: 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 383
           G     R+ EA+ LL   M   G  P IV+YN +L G  +  R++ A  +F  ML  GV 
Sbjct: 654 GHCFASRMDEAVKLL-DGMVSAGLKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKGVT 712

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
               TY  +++GL  S +  EA+  + +++    +     Y+ ++ G C++    EA   
Sbjct: 713 PGVETYNTILNGLFRSGRFSEARELYVNMIKSRKLWSICTYSIILDGFCKNNCFDEAFKI 772

Query: 444 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
              L    +  +I+ +N++IDG  K   K +A  +   +  NGL P  VT+R++
Sbjct: 773 FQSLCSMDLQLDIITFNIMIDGLFKGGRKEDAMDLFAAIPANGLVPSVVTYRLI 826



 Score =  206 bits (524), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 145/537 (27%), Positives = 255/537 (47%), Gaps = 50/537 (9%)

Query: 4   LCGLSRVGEAHKLF---FDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           LC   R  EA +L     D +     P+VVSY  +I+G+   G++D AY +F EM   GV
Sbjct: 165 LCDRRRAEEARELLHMMVDGQDSSCSPDVVSYNIVINGFFNEGQVDKAYSLFLEM---GV 221

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TY+ ++ G+ + ++V+RA  +  ++ E+      +  NN  +  ++D LC+   V
Sbjct: 222 SPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEK-----GVKPNNVTYNTIIDGLCKAQEV 276

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +    + + M              +ID LC++     A  V   M  RG+ P  V+YN+I
Sbjct: 277 DMAEGVFQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTI 336

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK-- 238
           + GLCK     +A  + ++ I  G  P   TY ++++GLC    +++A  V Q M+ K  
Sbjct: 337 IDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGV 396

Query: 239 KDVDRTRICNIY---------------------------------LRALCLIKNPTELLN 265
           K  + T  C I+                                 L  LC      E  +
Sbjct: 397 KPNNGTYNCLIHGYLSTGQWEEVVQRIKEMSAHDLEPDVFTYGLLLDYLCKNGKCNEARS 456

Query: 266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 325
           +   M++   +P V     +++G+ K G + E   +LN MVA    +P+   F T+I   
Sbjct: 457 LFDSMIRKGIKPSVTIYGIMLHGYGKKGALSEMHDLLNLMVANGI-SPNHRIFNTVICAY 515

Query: 326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 385
                I E +++  + M Q+G SP +VTY  ++  L +L RV++A   FN M+  GV  +
Sbjct: 516 AKRAMIDEVMHIFIK-MKQQGLSPNVVTYGTLIDALCKLGRVDDAVLQFNQMINEGVTPN 574

Query: 386 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY 445
           +  +  ++ GLC  ++ ++ +  + +++      D   +  ++  LC+ G++ EA   + 
Sbjct: 575 NVVFNSLVYGLCTVDKWEKVEELFLEMLNQGIRPDIVFFNTVLCNLCKEGRVMEARRLID 634

Query: 446 ELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
            +V  G+ P+++ YN +IDG C  S   EA ++L  M   GL P+ V++  L  LHG
Sbjct: 635 SMVCMGLKPDVISYNTLIDGHCFASRMDEAVKLLDGMVSAGLKPNIVSYNTL--LHG 689



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 108/358 (30%), Positives = 171/358 (47%), Gaps = 11/358 (3%)

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLC---KHGGCMRAY--QLLEE 199
           +I   CR GR         ++ K G     +  N ++ GLC   + G  M     Q+ E 
Sbjct: 90  VIGCFCRIGRLELGFAAFGLILKTGWRVDDIVVNQLLKGLCDTKRVGEAMHVLLRQMPEV 149

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
           G + G +    +Y  L++GLC     E+AR++L  M+  +D   +     Y   +    N
Sbjct: 150 GCRLGVV----SYNTLLKGLCDRRRAEEARELLHMMVDGQDSSCSPDVVSYNIVINGFFN 205

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
             ++       L+    PDV+T NT+I+G CK   ++ A  V   MV  K   P+ VT+ 
Sbjct: 206 EGQVDKAYSLFLEMGVSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVE-KGVKPNNVTYN 264

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
           TII GL     +  A  + +Q M  +G  P  VTYN ++ GL + + V+ A+ VF  M+ 
Sbjct: 265 TIIDGLCKAQEVDMAEGV-FQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQMID 323

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
            GV  D  TY  +IDGLC++  +D+A+  +  ++      DN  Y  +I GLC++  +  
Sbjct: 324 RGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDR 383

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           A     +++D GV PN   YN +I G        E  Q ++EM  + L PD  T+ +L
Sbjct: 384 AEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKEMSAHDLEPDVFTYGLL 441



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 119/482 (24%), Positives = 209/482 (43%), Gaps = 82/482 (17%)

Query: 27  PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVL 86
           P+  +Y+ +I  +CR G +++ +  F  +   G   + +  + L++G+  T+ V  A   
Sbjct: 82  PDCCTYSIVIGCFCRIGRLELGFAAFGLILKTGWRVDDIVVNQLLKGLCDTKRVGEA--- 138

Query: 87  MFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMI 146
           M  L  +M E                  CR G V                    +   ++
Sbjct: 139 MHVLLRQMPEVG----------------CRLGVV--------------------SYNTLL 162

Query: 147 DSLCRSGRNHGASRVVYVM---RKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQF 203
             LC   R   A  ++++M   +    +P +VSYN +++G    G   +AY L    ++ 
Sbjct: 163 KGLCDRRRAEEARELLHMMVDGQDSSCSPDVVSYNIVINGFFNEGQVDKAYSLF---LEM 219

Query: 204 GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTEL 263
           G  P   TY  +++GLC   ++++A  V Q M+ K                         
Sbjct: 220 GVSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKG------------------------ 255

Query: 264 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF 323
                       +P+ +T NT+I+G CK   ++ A  V   MV  K   P  VT+ TII 
Sbjct: 256 -----------VKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMV-DKGVKPSNVTYNTIID 303

Query: 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 383
           GL     +  A  + +Q M  RG  P  VTYN ++ GL + + +++A+ VF  M+  GV 
Sbjct: 304 GLCKAQAVDRAEGV-FQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVK 362

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
            D+ TY I+IDGLC++  +D A+  +  ++      +N  Y  +I G   +G+  E V  
Sbjct: 363 PDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQR 422

Query: 444 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGN 503
           + E+    + P++  Y +++D  CK     EA  +   M + G+ P    + I+   +G 
Sbjct: 423 IKEMSAHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIMLHGYGK 482

Query: 504 RG 505
           +G
Sbjct: 483 KG 484



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 113/478 (23%), Positives = 217/478 (45%), Gaps = 14/478 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   +  EA  LF  M  +G  P+V  Y  ++HGY + G +   + + + M   G+
Sbjct: 442 LDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIMLHGYGKKGALSEMHDLLNLMVANGI 501

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN   ++ ++    +   ++    +  K+     +++ LS N   +  L+D+LC+ G V
Sbjct: 502 SPNHRIFNTVICAYAKRAMIDEVMHIFIKM-----KQQGLSPNVVTYGTLIDALCKLGRV 556

Query: 121 NE-VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           ++ V +  + + +G + N       ++  LC   +      +   M  +G+ P +V +N+
Sbjct: 557 DDAVLQFNQMINEGVTPNN-VVFNSLVYGLCTVDKWEKVEELFLEMLNQGIRPDIVFFNT 615

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++  LCK G  M A +L++  +  G  P   +Y  L++G C  S +++A K+L  M+S  
Sbjct: 616 VLCNLCKEGRVMEARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKLLDGMVSAG 675

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                   N  L   C          +   ML+    P V T NT++NG  + GR  EA 
Sbjct: 676 LKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKGVTPGVETYNTILNGLFRSGRFSEAR 735

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           ++  +M+  +       T++ I+ G        EA  + +Q +        I+T+N ++ 
Sbjct: 736 ELYVNMIKSRKLWS-ICTYSIILDGFCKNNCFDEAFKI-FQSLCSMDLQLDIITFNIMID 793

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
           GLF+  R E+A ++F  +   G+V    TY ++ + L E   L+E    +  +       
Sbjct: 794 GLFKGGRKEDAMDLFAAIPANGLVPSVVTYRLIAENLIEEGSLEELDCLFSVMEKSGTAP 853

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQ 477
           ++++  A+I+ L   G+I  A  +L +L +   +      +++I         RE YQ
Sbjct: 854 NSHMLNALIRKLLDRGEIPRAGAYLSKLDEKNFSLEASTTSMLIS-----LFSREEYQ 906


>gi|357145546|ref|XP_003573680.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Brachypodium distachyon]
          Length = 739

 Score =  213 bits (541), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 143/510 (28%), Positives = 241/510 (47%), Gaps = 23/510 (4%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LCG  R  EA  L  D  + G  PNVV Y  LI GYC  G++++A  VF+ M   G  PN
Sbjct: 187 LCGAGRTREAETLLSDAMAEGFEPNVVVYNALIDGYCNVGDLELAVDVFERMDVNGCSPN 246

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             TY+ L+ G  ++R ++RA      L+ RM  +  L  N   +  L+   C +G ++  
Sbjct: 247 VRTYTELISGFCKSRKLDRA----MMLFSRMV-DAGLVPNVVTYTALIQGQCSDGQLDCA 301

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           +R+ + M     V  E+ C  +ID+LC+  R   A  ++  + ++G+  + + Y S++ G
Sbjct: 302 YRLLQSMENSGLVPNEWTCSVLIDALCKHERVGEAQLLLGSLIQKGIKVNEIVYTSLIDG 361

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LCK G    A +L++  +  G++P  HTY  L++GLC + +L +A  VL  M+ K     
Sbjct: 362 LCKAGRFAAADRLMQTLVSQGFVPDAHTYSSLIDGLCRQKELSEAMLVLDDMMEKGVQPS 421

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                I +  L           +L  M+    +PDV T    +  +C  GR+E+A  ++ 
Sbjct: 422 PVTYTIIIDELVREVGADGSKKILDKMIAAGIKPDVFTYTIFVRSYCHEGRMEDAEHMML 481

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            MV    C P+ VT+  +I G  N+G   +A +  ++ M   G  P   +Y  +LR L +
Sbjct: 482 HMVDHGVC-PNLVTYNALICGYANLGLTSQAFS-TFKHMVANGCKPNEESYTVLLRLLIK 539

Query: 364 -------------LRRVEEAKEVFNC---MLGIGVVADSTTYAIVIDGLCESNQLDEAKR 407
                        + ++ E K +      M+ + + ++   Y   +  LC  ++LDEAK 
Sbjct: 540 KESSNNIPANSVSIWKIAEMKYLHGLLEEMVKLQLPSEIDIYNCFLTSLCRVDRLDEAKI 599

Query: 408 FWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGAC 467
              ++   +      VY ++I   CR   + EA+ F+  +V SG  P +  Y  +I   C
Sbjct: 600 LLIEMQSANLTPSEDVYTSIIACCCRLKMLTEALTFVDSMVKSGYIPQLESYRHIISSLC 659

Query: 468 KLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           +    + A Q+  +M     N + + WRIL
Sbjct: 660 EEGSIQTAKQVFGDMLSKEYNYEEIAWRIL 689



 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 129/491 (26%), Positives = 217/491 (44%), Gaps = 12/491 (2%)

Query: 14  HKLFFDMKS---RGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVL 70
           H++  DM+S   R    N+ +YTTLI+ YC  G++  + +    +   G  P+S  Y+  
Sbjct: 54  HRMLADMESFASRMPARNLRTYTTLINAYCLAGDLPASKRHLSSLLRAGFAPDSHAYTSF 113

Query: 71  VRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNA-AFANLVDSLCREGYVNEVFRIAED 129
           V G  R   +  A  L   +  R        V  A  +  L+  LC  G V E   +   
Sbjct: 114 VVGYCRAGLLAHACRLFVLMPLRG------CVRTAFTYTALLHGLCGAGMVREAMSVFAG 167

Query: 130 MPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG 189
           M       +      M+  LC +GR   A  ++      G  P++V YN+++ G C  G 
Sbjct: 168 MQADGCAPDPHVYATMVHGLCGAGRTREAETLLSDAMAEGFEPNVVVYNALIDGYCNVGD 227

Query: 190 CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNI 249
              A  + E     G  P+  TY  L+ G C    L++A  +   M+    V        
Sbjct: 228 LELAVDVFERMDVNGCSPNVRTYTELISGFCKSRKLDRAMMLFSRMVDAGLVPNVVTYTA 287

Query: 250 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK 309
            ++  C          +L  M  +   P+  T + +I+  CK  R+ EA  +L  ++  K
Sbjct: 288 LIQGQCSDGQLDCAYRLLQSMENSGLVPNEWTCSVLIDALCKHERVGEAQLLLGSLIQ-K 346

Query: 310 FCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEE 369
               + + +T++I GL   GR   A + L Q +  +G+ P   TY++++ GL R + + E
Sbjct: 347 GIKVNEIVYTSLIDGLCKAGRFAAA-DRLMQTLVSQGFVPDAHTYSSLIDGLCRQKELSE 405

Query: 370 AKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIK 429
           A  V + M+  GV     TY I+ID L      D +K+  D ++      D + Y   ++
Sbjct: 406 AMLVLDDMMEKGVQPSPVTYTIIIDELVREVGADGSKKILDKMIAAGIKPDVFTYTIFVR 465

Query: 430 GLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNP 489
             C  G++ +A H +  +VD GV PN+V YN +I G   L +  +A+   + M  NG  P
Sbjct: 466 SYCHEGRMEDAEHMMLHMVDHGVCPNLVTYNALICGYANLGLTSQAFSTFKHMVANGCKP 525

Query: 490 DAVTWRILDKL 500
           +  ++ +L +L
Sbjct: 526 NEESYTVLLRL 536



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 100/439 (22%), Positives = 195/439 (44%), Gaps = 26/439 (5%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   RVGEA  L   +  +G   N + YT+LI G C+ G    A ++   +   G 
Sbjct: 324 IDALCKHERVGEAQLLLGSLIQKGIKVNEIVYTSLIDGLCKAGRFAAADRLMQTLVSQGF 383

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P++ TYS L+ G+ R +++  A +++  + E+  +   ++     +  ++D L RE   
Sbjct: 384 VPDAHTYSSLIDGLCRQKELSEAMLVLDDMMEKGVQPSPVT-----YTIIIDELVREVGA 438

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +   +I + M       + F     + S C  GR   A  ++  M   G+ P+LV+YN++
Sbjct: 439 DGSKKILDKMIAAGIKPDVFTYTIFVRSYCHEGRMEDAEHMMLHMVDHGVCPNLVTYNAL 498

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G    G   +A+   +  +  G  P+E +Y VL                L+ ++ K+ 
Sbjct: 499 ICGYANLGLTSQAFSTFKHMVANGCKPNEESYTVL----------------LRLLIKKES 542

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
            +     ++ +  +  +K    L  +L  M++ Q   ++   N  +   C++ R++EA  
Sbjct: 543 SNNIPANSVSIWKIAEMKY---LHGLLEEMVKLQLPSEIDIYNCFLTSLCRVDRLDEAKI 599

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +L +M +     P    +T+II     +  + EAL  +   M + GY P + +Y  ++  
Sbjct: 600 LLIEMQSANL-TPSEDVYTSIIACCCRLKMLTEALTFV-DSMVKSGYIPQLESYRHIISS 657

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L     ++ AK+VF  ML      +   + I+IDGL +   + E       +   +    
Sbjct: 658 LCEEGSIQTAKQVFGDMLSKEYNYEEIAWRILIDGLLQKGYVAECSSLLSVMEEKNYRPS 717

Query: 421 NYVYAAMIKGLCRSGKIHE 439
           + +YA +   +  +  I E
Sbjct: 718 DALYARLTGKITDANDIQE 736



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 67/165 (40%), Gaps = 4/165 (2%)

Query: 342 MPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ 401
           MP R     + TY  ++        +  +K   + +L  G   DS  Y   + G C +  
Sbjct: 67  MPARN----LRTYTTLINAYCLAGDLPASKRHLSSLLRAGFAPDSHAYTSFVVGYCRAGL 122

Query: 402 LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNV 461
           L  A R +  +     +   + Y A++ GLC +G + EA+     +   G  P+   Y  
Sbjct: 123 LAHACRLFVLMPLRGCVRTAFTYTALLHGLCGAGMVREAMSVFAGMQADGCAPDPHVYAT 182

Query: 462 VIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           ++ G C     REA  +L +    G  P+ V +  L   + N G+
Sbjct: 183 MVHGLCGAGRTREAETLLSDAMAEGFEPNVVVYNALIDGYCNVGD 227


>gi|242082678|ref|XP_002441764.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
 gi|241942457|gb|EES15602.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
          Length = 695

 Score =  213 bits (541), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 142/506 (28%), Positives = 240/506 (47%), Gaps = 42/506 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    + EA  LF  MK+ G  P+VV+Y +LI GY + G+++   ++  EMR  G 
Sbjct: 207 IDFLCKEGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGDLEEVEQLVSEMRKSGC 266

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             + +TY+ L+    +   +E+A    +  +  MK                    R+G V
Sbjct: 267 AADVVTYNALINCFSKFGRMEKA----YSYFGEMK--------------------RQGVV 302

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
             V   +                  +D+ C+ G    A ++   MR RG+ P+  +Y S+
Sbjct: 303 ANVVTFST----------------FVDAFCKEGLVQEAMKLFAQMRVRGMMPNEFTYTSL 346

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           V G CK G    A  LL+E +  G +P+  TY V+V+GLC E  + +A  VL  M     
Sbjct: 347 VDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAEADNVLSLMERGGV 406

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                +    +    +  N    L++L  M     + DV    T+I G CK  +++EA  
Sbjct: 407 KANELLYTTLIHGHFMNNNSERALDLLNQMKNKGMELDVSLYGTLIWGLCKDQKVDEAKS 466

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +L+ M AG    P+ V +TTI+  L   G+  EA+ LL++++   G+ P +VTY A++ G
Sbjct: 467 LLHKM-AGCGLRPNTVIYTTIMDALFKAGKESEAVALLHKIL-DSGFQPNVVTYCALIDG 524

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L +   + EA   FN M  +G+  +   Y  +IDG C+   L++A    ++++      D
Sbjct: 525 LCKAGSISEAISHFNKMRELGLDPNVQAYTALIDGFCKIGSLNKAMHLMNEMIDKGMSLD 584

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
             VY ++I G  +   + +A     ++++SG+  ++ CY   I G C ++M +EA  +L 
Sbjct: 585 KVVYTSLIDGYMKQANLQDAFALKTKMIESGLQLDLYCYTCFISGFCNMNMMQEARGVLS 644

Query: 481 EMRKNGLNPDAVTWRILDKLHGNRGN 506
           EM   G+ PD   +  L + +   GN
Sbjct: 645 EMIGTGITPDKTVYNCLIRKYQKLGN 670



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 97/372 (26%), Positives = 173/372 (46%), Gaps = 41/372 (11%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C    V EA KLF  M+ RG +PN  +YT+L+ G C+ G +D A  + DEM H G+
Sbjct: 312 VDAFCKEGLVQEAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGL 371

Query: 61  LPNSLTYSVLVRGV--------------LRTRDVERANVLMFK----------------- 89
           +PN +TY+V+V G+              L  R   +AN L++                  
Sbjct: 372 VPNVVTYTVMVDGLCKEGKVAEADNVLSLMERGGVKANELLYTTLIHGHFMNNNSERALD 431

Query: 90  LWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSL 149
           L  +MK  + + ++ + +  L+  LC++  V+E   +   M              ++D+L
Sbjct: 432 LLNQMK-NKGMELDVSLYGTLIWGLCKDQKVDEAKSLLHKMAGCGLRPNTVIYTTIMDAL 490

Query: 150 CRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSE 209
            ++G+   A  +++ +   G  P++V+Y +++ GLCK G    A     +  + G  P+ 
Sbjct: 491 FKAGKESEAVALLHKILDSGFQPNVVTYCALIDGLCKAGSISEAISHFNKMRELGLDPNV 550

Query: 210 HTYKVLVEGLCGESDLEKARKVLQFMLSK----KDVDRTRICNIYLRALCLIKNPTELLN 265
             Y  L++G C    L KA  ++  M+ K      V  T + + Y++      N  +   
Sbjct: 551 QAYTALIDGFCKIGSLNKAMHLMNEMIDKGMSLDKVVYTSLIDGYMKQ----ANLQDAFA 606

Query: 266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 325
           +   M+++  Q D+      I+GFC M  ++EA  VL++M+ G    PD   +  +I   
Sbjct: 607 LKTKMIESGLQLDLYCYTCFISGFCNMNMMQEARGVLSEMI-GTGITPDKTVYNCLIRKY 665

Query: 326 LNVGRIQEALNL 337
             +G ++EA +L
Sbjct: 666 QKLGNMEEASSL 677



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 91/317 (28%), Positives = 155/317 (48%), Gaps = 22/317 (6%)

Query: 197 LEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALC- 255
           L  G +   LPS      L+  L     L+ A + L  +   +    TR CN  L  L  
Sbjct: 124 LALGPRRSALPS--VVDTLLSLLADHGLLDDAVRALARVRQLRVPPNTRTCNHILLRLAR 181

Query: 256 -----LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKF 310
                L++   +LL V          P+V T N VI+  CK G + EA  +   M A   
Sbjct: 182 NRQGGLVRRLFDLLPV----------PNVFTFNIVIDFLCKEGELVEARALFVRMKAMG- 230

Query: 311 CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEA 370
           C+PD VT+ ++I G    G ++E   L+ + M + G +  +VTYNA++    +  R+E+A
Sbjct: 231 CSPDVVTYNSLIDGYGKCGDLEEVEQLVSE-MRKSGCAADVVTYNALINCFSKFGRMEKA 289

Query: 371 KEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKG 430
              F  M   GVVA+  T++  +D  C+   + EA + +  +     + + + Y +++ G
Sbjct: 290 YSYFGEMKRQGVVANVVTFSTFVDAFCKEGLVQEAMKLFAQMRVRGMMPNEFTYTSLVDG 349

Query: 431 LCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD 490
            C++G++ +A+  L E+V  G+ PN+V Y V++DG CK     EA  +L  M + G+  +
Sbjct: 350 TCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAEADNVLSLMERGGVKAN 409

Query: 491 AVTWRILDKLHGNRGND 507
            + +  L  +HG+  N+
Sbjct: 410 ELLYTTL--IHGHFMNN 424



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 94/234 (40%), Gaps = 5/234 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   +V EA  L   M   G  PN V YTT++    + G+   A  +  ++   G  PN
Sbjct: 455 LCKDQKVDEAKSLLHKMAGCGLRPNTVIYTTIMDALFKAGKESEAVALLHKILDSGFQPN 514

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY  L+ G+ +   +  A       + +M+E   L  N  A+  L+D  C+ G +N+ 
Sbjct: 515 VVTYCALIDGLCKAGSISEA----ISHFNKMREL-GLDPNVQAYTALIDGFCKIGSLNKA 569

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             +  +M       ++     +ID   +      A  +   M + GL   L  Y   + G
Sbjct: 570 MHLMNEMIDKGMSLDKVVYTSLIDGYMKQANLQDAFALKTKMIESGLQLDLYCYTCFISG 629

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
            C       A  +L E I  G  P +  Y  L+       ++E+A  +   M S
Sbjct: 630 FCNMNMMQEARGVLSEMIGTGITPDKTVYNCLIRKYQKLGNMEEASSLQNEMES 683


>gi|242054609|ref|XP_002456450.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
 gi|241928425|gb|EES01570.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
          Length = 669

 Score =  213 bits (541), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 132/492 (26%), Positives = 240/492 (48%), Gaps = 13/492 (2%)

Query: 3   QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
            LC   R  +A ++    +  G   +V +Y TL+ GYCR G +D A ++   M    V P
Sbjct: 85  NLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDAARRLIGSM---PVAP 141

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           ++ TY+ L+R +     V  A  L+  +  R  +      N   +  L++++CR     +
Sbjct: 142 DAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQP-----NVVTYTVLLEAMCRNSGFEQ 196

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
              + ++M              +I+ +CR GR   A  ++  +   G  P  VSY +++ 
Sbjct: 197 AMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARELLNRLPSYGFQPDTVSYTTLLK 256

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           GLC         +L  E ++   +P+E T+ +L+   C    +E+A +VL+ M       
Sbjct: 257 GLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLEQMTEHGCAT 316

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
            T +CNI + ++C      +   +L  M    C PD I+  TV+ G C+  R ++A ++L
Sbjct: 317 NTTLCNIVINSICKQGRVDDAFKLLNDMGSYGCNPDTISYTTVLKGLCRAERWDDAKELL 376

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
           N+MV    C P+ VTF T I  L   G I++A+ L+ Q M + G + G+VTYNA++ G  
Sbjct: 377 NEMVRNN-CPPNEVTFNTFICILCQKGLIEQAIMLIEQ-MSEHGCTVGVVTYNALVNGFC 434

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
               ++ A E+F  M       ++ TY  ++ GLC + +LD A     +++      +  
Sbjct: 435 VQGHIDSALELFRSM---PCKPNTITYTTLLTGLCNAERLDGAAELVAEMLRGDCPPNVV 491

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
            +  ++   C+ G + EA+  + ++++ G TPN++ YN ++DG  K     +A ++L  +
Sbjct: 492 TFNVLVSFFCQKGFLEEAIELVEQMMEHGCTPNLITYNTLLDGITKDCSSEDALELLHGL 551

Query: 483 RKNGLNPDAVTW 494
              G++PD +T+
Sbjct: 552 VSKGVSPDVITF 563



 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 139/514 (27%), Positives = 245/514 (47%), Gaps = 35/514 (6%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   RV +A  L  DM  RG  PNVV+YT L+   CR    + A  V DEMR  G  PN
Sbjct: 153 LCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCRNSGFEQAMAVLDEMRAKGCTPN 212

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKL------------------------WERMKE--- 96
            +TY+V++ G+ R   V+ A  L+ +L                        W+ ++E   
Sbjct: 213 IVTYNVIINGMCREGRVDDARELLNRLPSYGFQPDTVSYTTLLKGLCASKRWDDVEELFA 272

Query: 97  ---EEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSG 153
              E++   N   F  L+   CR G V    ++ E M +         C  +I+S+C+ G
Sbjct: 273 EMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLEQMTEHGCATNTTLCNIVINSICKQG 332

Query: 154 RNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYK 213
           R   A +++  M   G  P  +SY +++ GLC+      A +LL E ++    P+E T+ 
Sbjct: 333 RVDDAFKLLNDMGSYGCNPDTISYTTVLKGLCRAERWDDAKELLNEMVRNNCPPNEVTFN 392

Query: 214 VLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQT 273
             +  LC +  +E+A  +++ M            N  +   C+  +    L +   M   
Sbjct: 393 TFICILCQKGLIEQAIMLIEQMSEHGCTVGVVTYNALVNGFCVQGHIDSALELFRSM--- 449

Query: 274 QCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQE 333
            C+P+ IT  T++ G C   R++ A +++ +M+ G  C P+ VTF  ++      G ++E
Sbjct: 450 PCKPNTITYTTLLTGLCNAERLDGAAELVAEMLRGD-CPPNVVTFNVLVSFFCQKGFLEE 508

Query: 334 ALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVI 393
           A+ L+ Q+M + G +P ++TYN +L G+ +    E+A E+ + ++  GV  D  T++ +I
Sbjct: 509 AIELVEQMM-EHGCTPNLITYNTLLDGITKDCSSEDALELLHGLVSKGVSPDVITFSSII 567

Query: 394 DGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVT 453
             L + ++++EA + +  +          VY  ++ GLC+  +I  A+ F   +V +G  
Sbjct: 568 GILSKEDRIEEAVQLFHVVQDIGMRPKAVVYNKILLGLCKRCEIDNAIDFFAYMVSNGCM 627

Query: 454 PNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
           PN   Y ++I+G     + +EA  +L  +   G+
Sbjct: 628 PNESTYIILIEGLAHEGLLKEAQDLLSVLCSRGV 661



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 116/448 (25%), Positives = 203/448 (45%), Gaps = 15/448 (3%)

Query: 59  GVLPNSLTYSVLVRGVLRT-RDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCRE 117
           G  P+    + L+R + R  R  + A VL      R  E     V+  A+  LV   CR 
Sbjct: 71  GEAPDVYLCTKLIRNLCRRGRTSDAARVL------RAAEGSGSPVDVFAYNTLVAGYCRY 124

Query: 118 GYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
           G+++   R+   MP      + +    +I  LC  GR   A  ++  M +RG  P++V+Y
Sbjct: 125 GHLDAARRLIGSMPVAP---DAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTY 181

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
             ++  +C++ G  +A  +L+E    G  P+  TY V++ G+C E  ++ AR++L  + S
Sbjct: 182 TVLLEAMCRNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARELLNRLPS 241

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
                 T      L+ LC  K   ++  +   M++  C P+ +T + +I  FC+ G +E 
Sbjct: 242 YGFQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVER 301

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           A++VL  M     CA +      +I  +   GR+ +A  LL   M   G +P  ++Y  V
Sbjct: 302 AIQVLEQMTEHG-CATNTTLCNIVINSICKQGRVDDAFKLLND-MGSYGCNPDTISYTTV 359

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 417
           L+GL R  R ++AKE+ N M+      +  T+   I  LC+   +++A    + +     
Sbjct: 360 LKGLCRAERWDDAKELLNEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMSEHGC 419

Query: 418 IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQ 477
                 Y A++ G C  G I  A+     +      PN + Y  ++ G C       A +
Sbjct: 420 TVGVVTYNALVNGFCVQGHIDSALELFRSM---PCKPNTITYTTLLTGLCNAERLDGAAE 476

Query: 478 ILREMRKNGLNPDAVTWRILDKLHGNRG 505
           ++ EM +    P+ VT+ +L      +G
Sbjct: 477 LVAEMLRGDCPPNVVTFNVLVSFFCQKG 504


>gi|242046334|ref|XP_002461038.1| hypothetical protein SORBIDRAFT_02g039560 [Sorghum bicolor]
 gi|241924415|gb|EER97559.1| hypothetical protein SORBIDRAFT_02g039560 [Sorghum bicolor]
          Length = 595

 Score =  213 bits (541), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 140/506 (27%), Positives = 237/506 (46%), Gaps = 76/506 (15%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M  LC   R GEA  L   M++ G   +VV+Y TLI G C   E+D A ++ DEM   GV
Sbjct: 130 MRGLCASRRTGEAVALLRSMQASGVRADVVTYGTLIRGLCDASELDAALELLDEMCGSGV 189

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN + YS L+RG                                         CR G  
Sbjct: 190 QPNVVVYSCLLRG----------------------------------------YCRSGRW 209

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +V ++ EDM +     +      +ID LC+ G+   A++V  +M +RGL P++V+YN +
Sbjct: 210 QDVGKVFEDMSRRGIKPDVIMFTGLIDDLCKEGKTGKAAKVKDMMVQRGLEPNVVTYNVL 269

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++ LCK G    A  L +E    G  P   TY  L+ GL G  ++++A   L+ M+    
Sbjct: 270 INSLCKEGSVREALTLRKEMDDKGVAPDVVTYNTLIAGLSGVLEMDEAMSFLEEMIQG-- 327

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                           T  +PDV+T N+VI+G CK+GR+ +A+K
Sbjct: 328 -------------------------------DTVVEPDVVTFNSVIHGLCKIGRMTQAVK 356

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           V  +M+A + C  + VT+  +I G L V +++ A+NL+ + +   G  P   TY+ ++ G
Sbjct: 357 V-REMMAERGCMCNLVTYNYLIGGFLRVHKVKMAMNLMDE-LAISGLEPDSFTYSILING 414

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
             ++  V+ A++    M   G+ A+   Y  ++  +C+   ++ A   ++++     + D
Sbjct: 415 FSKMWEVDRAEKFLCTMRQRGIKAELFHYIPLLAAMCQQGMMERAMGLFNEMDKNCGL-D 473

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              Y+ MI G C+SG +      + +++D G+ P+ V Y+++I+   KL    EA ++L+
Sbjct: 474 AIAYSTMIHGACKSGDMKTVKQLIQDMLDEGLAPDAVTYSMLINMYAKLGDLEEAERVLK 533

Query: 481 EMRKNGLNPDAVTWRILDKLHGNRGN 506
           +M  +G  PD   +  L K +   G 
Sbjct: 534 QMTASGFVPDVAVFDSLIKGYSAEGQ 559



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 134/502 (26%), Positives = 232/502 (46%), Gaps = 87/502 (17%)

Query: 12  EAHKLFFDMKSRGHV---PNVVSYTTLIHGYC---RTGEMDVAYKVFDEMRHCGVLPNSL 65
           +A  L  DM    H    PN VSYTT++ G C   RTGE   A  +   M+  GV  + +
Sbjct: 103 QARSLLVDMSREAHPAARPNAVSYTTVMRGLCASRRTGE---AVALLRSMQASGVRADVV 159

Query: 66  TYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFR 125
           TY  L+RG+                        D S  +AA   L+D +C  G    V  
Sbjct: 160 TYGTLIRGLC-----------------------DASELDAAL-ELLDEMCGSGVQPNVV- 194

Query: 126 IAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLC 185
                         ++C  ++   CRSGR     +V   M +RG+ P ++ +  ++  LC
Sbjct: 195 -------------VYSC--LLRGYCRSGRWQDVGKVFEDMSRRGIKPDVIMFTGLIDDLC 239

Query: 186 KHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTR 245
           K G   +A ++ +  +Q G  P+  TY VL+  LC E  + +A      +  +K++D   
Sbjct: 240 KEGKTGKAAKVKDMMVQRGLEPNVVTYNVLINSLCKEGSVREA------LTLRKEMDDKG 293

Query: 246 ICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM 305
           +                              PDV+T NT+I G   +  ++EA+  L +M
Sbjct: 294 VA-----------------------------PDVVTYNTLIAGLSGVLEMDEAMSFLEEM 324

Query: 306 VAG-KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
           + G     PD VTF ++I GL  +GR+ +A+ +  ++M +RG    +VTYN ++ G  R+
Sbjct: 325 IQGDTVVEPDVVTFNSVIHGLCKIGRMTQAVKV-REMMAERGCMCNLVTYNYLIGGFLRV 383

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY 424
            +V+ A  + + +   G+  DS TY+I+I+G  +  ++D A++F   +       + + Y
Sbjct: 384 HKVKMAMNLMDELAISGLEPDSFTYSILINGFSKMWEVDRAEKFLCTMRQRGIKAELFHY 443

Query: 425 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484
             ++  +C+ G +  A+    E+ D     + + Y+ +I GACK    +   Q++++M  
Sbjct: 444 IPLLAAMCQQGMMERAMGLFNEM-DKNCGLDAIAYSTMIHGACKSGDMKTVKQLIQDMLD 502

Query: 485 NGLNPDAVTWRILDKLHGNRGN 506
            GL PDAVT+ +L  ++   G+
Sbjct: 503 EGLAPDAVTYSMLINMYAKLGD 524



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/249 (24%), Positives = 123/249 (49%), Gaps = 6/249 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC + R+ +A K+   M  RG + N+V+Y  LI G+ R  ++ +A  + DE+   G+ P+
Sbjct: 345 LCKIGRMTQAVKVREMMAERGCMCNLVTYNYLIGGFLRVHKVKMAMNLMDELAISGLEPD 404

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           S TYS+L+ G  +  +V+RA   +  + +R  + E        +  L+ ++C++G +   
Sbjct: 405 SFTYSILINGFSKMWEVDRAEKFLCTMRQRGIKAELFH-----YIPLLAAMCQQGMMERA 459

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             +  +M +   ++   A   MI   C+SG      +++  M   GL P  V+Y+ +++ 
Sbjct: 460 MGLFNEMDKNCGLDA-IAYSTMIHGACKSGDMKTVKQLIQDMLDEGLAPDAVTYSMLINM 518

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
             K G    A ++L++    G++P    +  L++G   E   +K  K++  M +K     
Sbjct: 519 YAKLGDLEEAERVLKQMTASGFVPDVAVFDSLIKGYSAEGQTDKVLKLIHEMRAKNVAFD 578

Query: 244 TRICNIYLR 252
            +I +  +R
Sbjct: 579 PKIISTIIR 587


>gi|297816676|ref|XP_002876221.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322059|gb|EFH52480.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 754

 Score =  213 bits (541), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 135/481 (28%), Positives = 239/481 (49%), Gaps = 11/481 (2%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M   G  P+V ++  LI   CR  ++  A  + ++M   G++P+  T++ +++G +   D
Sbjct: 180 MSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTIMQGYIEEGD 239

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP-QGKSVNE 138
           ++ A     ++ E+M E    S +N +   +V   C+EG V +     ++M  Q     +
Sbjct: 240 LDGA----LRIREQMVEF-GCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPD 294

Query: 139 EFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLE 198
           ++    +++ LC++G    A  ++ VM + G  P + +YNS++ GLCK G    A + L+
Sbjct: 295 QYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEFLD 354

Query: 199 EGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIK 258
           + I     P+  TY  L+  LC E+ +E+A ++ + + SK  +      N  ++ LCL +
Sbjct: 355 QMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTR 414

Query: 259 NPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM-VAGKFCAPDAVT 317
           N    + +   M    C+PD  T N +I+  C  G+++EAL +L  M ++G  CA   +T
Sbjct: 415 NHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSG--CARSVIT 472

Query: 318 FTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCM 377
           + T+I G     +I+EA   ++  M   G S   VTYN ++ GL + RRVE+A ++ + M
Sbjct: 473 YNTLIDGFCKANKIREA-EEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQM 531

Query: 378 LGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKI 437
           +  G   D  TY  ++   C    + +A      +       D   Y  +I GLC++G++
Sbjct: 532 IMEGQKPDKFTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRV 591

Query: 438 HEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM-RKNGLNPDAVTWRI 496
             A   L  +   G+      YN VI G  +     EA  + REM  +N   PDAV++RI
Sbjct: 592 EVASKLLRSIQMKGIALTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAAPDAVSYRI 651

Query: 497 L 497
           +
Sbjct: 652 V 652



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 138/508 (27%), Positives = 230/508 (45%), Gaps = 45/508 (8%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   ++  A  +  DM S G VP+  ++TT++ GY   G++D A ++ ++M   G   +
Sbjct: 199 LCRAHQLRPAILMLEDMPSYGLVPDEKTFTTIMQGYIEEGDLDGALRIREQMVEFGCSWS 258

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           +++ +V+V G  +   VE A        + M  ++    +   F  LV+ LC+ G+V   
Sbjct: 259 NVSVNVIVHGFCKEGRVEDA----LNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHA 314

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             I + M Q     + +    +I  LC+ G    A   +  M  R  +P+ V+YN+++  
Sbjct: 315 IEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQMITRDCSPNTVTYNTLIST 374

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LCK      A +L       G LP   T+  L++GLC   +   A ++ + M SK     
Sbjct: 375 LCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPD 434

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               N+ + +LC      E LN+L  M  + C   VIT NT+I+GFCK  +I EA ++ +
Sbjct: 435 EFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKIREAEEIFD 494

Query: 304 DM-VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
           +M V G   + ++VT+ T+I GL    R+++A  L+ Q M   G  P   TYN++L    
Sbjct: 495 EMEVHG--VSRNSVTYNTLIDGLCKSRRVEDASQLMDQ-MIMEGQKPDKFTYNSLLTHFC 551

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
           R   +++A ++   M   G   D  TY  +I GLC++ +++ A +    I         +
Sbjct: 552 RGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGIALTPH 611

Query: 423 VYAAMIKGLCRS-------------------------------------GKIHEAVHFLY 445
            Y  +I+GL R                                      G I EAV FL 
Sbjct: 612 AYNPVIQGLFRKRKTTEAINLFREMLEQNEAAPDAVSYRIVFRGLCNGGGPIREAVDFLV 671

Query: 446 ELVDSGVTPNIVCYNVVIDGACKLSMKR 473
           EL++ G  P      ++ +G   LSM+ 
Sbjct: 672 ELLEKGFVPEFSSLYMLAEGLLTLSMEE 699



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 126/476 (26%), Positives = 224/476 (47%), Gaps = 45/476 (9%)

Query: 62  PNSLTYS---VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREG 118
           PNS   S   V +   LR++  + A + +F L  +   + + S   A +  ++  L R G
Sbjct: 41  PNSAALSSSDVKLLDSLRSQADDSAALRLFNLASK---KPNFSPEPALYEEILLRLGRSG 97

Query: 119 YVNEVFRIAEDM-------------------PQGKSVNEEFACGH-MIDSLCRSGRNHGA 158
             +++ +I EDM                    Q +  +E     H MID        H  
Sbjct: 98  SFDDMRKILEDMKNSGCEMGTSPFLILIESYAQFELQDEILGVVHWMIDDFGLKPDTHFY 157

Query: 159 SRVVYV----------------MRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQ 202
           +R++ +                M   G+ P + ++N ++  LC+      A  +LE+   
Sbjct: 158 NRMLNLLVDGNNLKLVEIAHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPS 217

Query: 203 FGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTE 262
           +G +P E T+  +++G   E DL+ A ++ + M+           N+ +   C      +
Sbjct: 218 YGLVPDEKTFTTIMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVED 277

Query: 263 LLNVLVFML-QTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTI 321
            LN +  M  Q    PD  T NT++NG CK G ++ A+++++ M+   +  PD  T+ ++
Sbjct: 278 ALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGY-DPDVYTYNSV 336

Query: 322 IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG 381
           I GL  +G ++EA+  L Q M  R  SP  VTYN ++  L +  +VEEA E+   +   G
Sbjct: 337 ISGLCKLGEVKEAVEFLDQ-MITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKG 395

Query: 382 VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAV 441
           ++ D  T+  +I GLC +     A   ++++       D + Y  +I  LC  GK+ EA+
Sbjct: 396 ILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEAL 455

Query: 442 HFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           + L ++  SG   +++ YN +IDG CK +  REA +I  EM  +G++ ++VT+  L
Sbjct: 456 NMLKQMELSGCARSVITYNTLIDGFCKANKIREAEEIFDEMEVHGVSRNSVTYNTL 511



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 118/451 (26%), Positives = 213/451 (47%), Gaps = 15/451 (3%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEM--RHCGVL 61
           LC    V  A ++   M   G+ P+V +Y ++I G C+ GE+  A +  D+M  R C   
Sbjct: 305 LCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQMITRDCS-- 362

Query: 62  PNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVN 121
           PN++TY+ L+  + +   VE A  L      R+   + +  +   F +L+  LC      
Sbjct: 363 PNTVTYNTLISTLCKENQVEEATELA-----RVLTSKGILPDVCTFNSLIQGLCLTRNHR 417

Query: 122 EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
               + E+M       +EF    +IDSLC  G+   A  ++  M   G   S+++YN+++
Sbjct: 418 VAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLI 477

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
            G CK      A ++ +E    G   +  TY  L++GLC    +E A +++  M+ +   
Sbjct: 478 DGFCKANKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMIMEGQK 537

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
                 N  L   C   +  +  +++  M    C+PD++T  T+I+G CK GR+E A K+
Sbjct: 538 PDKFTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKL 597

Query: 302 LNDM-VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           L  + + G    P A  +  +I GL    +  EA+NL  +++ Q   +P  V+Y  V RG
Sbjct: 598 LRSIQMKGIALTPHA--YNPVIQGLFRKRKTTEAINLFREMLEQNEAAPDAVSYRIVFRG 655

Query: 361 LFR-LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
           L      + EA +    +L  G V + ++  ++ +GL   +  +   +  + ++  +   
Sbjct: 656 LCNGGGPIREAVDFLVELLEKGFVPEFSSLYMLAEGLLTLSMEETLVKLVNMVMQKARFS 715

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 450
           +  V  +M+KGL +  K  +A+  L  ++DS
Sbjct: 716 EEEV--SMVKGLLKIRKFQDALATLGGVLDS 744



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 101/380 (26%), Positives = 175/380 (46%), Gaps = 39/380 (10%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC  ++V EA +L   + S+G +P+V ++ +LI G C T    VA ++F+EMR  G  P+
Sbjct: 375 LCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPD 434

Query: 64  SLTYSVLV-----RGVLR--------------TRDVERANVLM--FKLWERMKEEEDL-- 100
             TY++L+     +G L                R V   N L+  F    +++E E++  
Sbjct: 435 EFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKIREAEEIFD 494

Query: 101 -------SVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSG 153
                  S N+  +  L+D LC+   V +  ++ + M       ++F    ++   CR G
Sbjct: 495 EMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMIMEGQKPDKFTYNSLLTHFCRGG 554

Query: 154 RNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYK 213
               A+ +V  M   G  P +V+Y +++ GLCK G    A +LL      G   + H Y 
Sbjct: 555 DIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGIALTPHAYN 614

Query: 214 VLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC-NIYLRALCLIKNPT-ELLNVLVFML 271
            +++GL  +    +A  + + ML + +     +   I  R LC    P  E ++ LV +L
Sbjct: 615 PVIQGLFRKRKTTEAINLFREMLEQNEAAPDAVSYRIVFRGLCNGGGPIREAVDFLVELL 674

Query: 272 QTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRI 331
           +    P+  +L  +  G   +  +EE L  L +MV  K  A  +    +++ GLL + + 
Sbjct: 675 EKGFVPEFSSLYMLAEGLLTLS-MEETLVKLVNMVMQK--ARFSEEEVSMVKGLLKIRKF 731

Query: 332 QEALNLLYQVM----PQRGY 347
           Q+AL  L  V+    P+R Y
Sbjct: 732 QDALATLGGVLDSRQPRRTY 751



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/305 (26%), Positives = 153/305 (50%), Gaps = 11/305 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   ++ EA  +   M+  G   +V++Y TLI G+C+  ++  A ++FDEM   GV
Sbjct: 442 IDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKIREAEEIFDEMEVHGV 501

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             NS+TY+ L+ G+ ++R VE A+ LM ++    ++ +  + N     +L+   CR G +
Sbjct: 502 SRNSVTYNTLIDGLCKSRRVEDASQLMDQMIMEGQKPDKFTYN-----SLLTHFCRGGDI 556

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +   I + M       +    G +I  LC++GR   AS+++  ++ +G+  +  +YN +
Sbjct: 557 KKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGIALTPHAYNPV 616

Query: 181 VHGLCKHGGCMRAYQLLEEGI-QFGYLPSEHTYKVLVEGLC-GESDLEKARKVLQFMLSK 238
           + GL +      A  L  E + Q    P   +Y+++  GLC G   + +A   L  +L K
Sbjct: 617 IQGLFRKRKTTEAINLFREMLEQNEAAPDAVSYRIVFRGLCNGGGPIREAVDFLVELLEK 676

Query: 239 KDVDRTRICNIYLRALCLIK-NPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
             V      ++Y+ A  L+  +  E L  LV M+  + +     + +++ G  K+ + ++
Sbjct: 677 GFV--PEFSSLYMLAEGLLTLSMEETLVKLVNMVMQKARFSEEEV-SMVKGLLKIRKFQD 733

Query: 298 ALKVL 302
           AL  L
Sbjct: 734 ALATL 738


>gi|224078588|ref|XP_002305565.1| predicted protein [Populus trichocarpa]
 gi|222848529|gb|EEE86076.1| predicted protein [Populus trichocarpa]
          Length = 757

 Score =  212 bits (540), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 140/481 (29%), Positives = 244/481 (50%), Gaps = 10/481 (2%)

Query: 19  DMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTR 78
           +M SRG  P+V ++  LI   CR  ++  A  + +EM   G+LP+  T++ +++G +   
Sbjct: 185 NMVSRGIRPDVSTFNILIKALCRAHQIRPAILLMEEMEDFGLLPDEKTFTTIMQGFIEEG 244

Query: 79  DVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSV-N 137
           +++ A     ++ E+M E     V N     LV+  C+EG + E  R  E+M   +    
Sbjct: 245 NLDGA----MRVKEQMVEA-GCVVTNVTVNVLVNGFCKEGRIEEALRFIEEMSLREGFFP 299

Query: 138 EEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLL 197
           +++    +++ L ++G    A  V+ +M + G  P + +YNS++ GLCK G    A ++L
Sbjct: 300 DKYTFNMLVNGLSKTGHVKHALEVMDMMLREGFDPDIYTYNSLISGLCKLGEVDEAVKVL 359

Query: 198 EEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLI 257
            + I+    P+  TY  ++  LC E+ +E+A K+   +  K  +      N  ++ LCL 
Sbjct: 360 NQMIERDCSPNTVTYNTIISTLCKENQVEEATKLALVLTGKGILPDVCTYNSLIQGLCLS 419

Query: 258 KNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM-VAGKFCAPDAV 316
           +N T  + +   M    C PD  T N +I+  C  G+++EAL +L +M V+G  CA + +
Sbjct: 420 RNHTVAMELYKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEALNLLKEMEVSG--CARNVI 477

Query: 317 TFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNC 376
           T+ T+I G     RI EA  +  Q M  +G S   VTYN ++ GL +  RVEEA ++ + 
Sbjct: 478 TYNTLIDGFCKNKRIAEAEEIFDQ-MELQGVSRNSVTYNTLIDGLCKSERVEEASQLMDQ 536

Query: 377 MLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGK 436
           M+  G+  D  TY  ++   C++  + +A      +       D   Y  +I GLC++G+
Sbjct: 537 MIMEGLRPDKFTYNSLLTYFCKAGDIKKAADIVQTMASDGCEPDIVTYGTLIAGLCKAGR 596

Query: 437 IHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRI 496
           +  A   L  +   G+      YN VI    +    +EA ++ REM +    PDAVT++I
Sbjct: 597 VEAATKLLRTIQMKGINLTPHAYNPVIQALFRRKRSKEAVRLFREMIEKAEAPDAVTYKI 656

Query: 497 L 497
           +
Sbjct: 657 V 657



 Score =  198 bits (503), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 129/468 (27%), Positives = 228/468 (48%), Gaps = 12/468 (2%)

Query: 24  GHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERA 83
           G V N   Y  L++      ++ +       M   G+ P+  T+++L++ + R   +  A
Sbjct: 155 GVVANTHFYNFLLNVLVDGNKLKLVEIAHSNMVSRGIRPDVSTFNILIKALCRAHQIRPA 214

Query: 84  NVLMFKLWERMKEEEDLSV--NNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFA 141
            +LM       +E ED  +  +   F  ++     EG ++   R+ E M +   V     
Sbjct: 215 ILLM-------EEMEDFGLLPDEKTFTTIMQGFIEEGNLDGAMRVKEQMVEAGCVVTNVT 267

Query: 142 CGHMIDSLCRSGRNHGASRVVYVMRKR-GLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEG 200
              +++  C+ GR   A R +  M  R G  P   ++N +V+GL K G    A ++++  
Sbjct: 268 VNVLVNGFCKEGRIEEALRFIEEMSLREGFFPDKYTFNMLVNGLSKTGHVKHALEVMDMM 327

Query: 201 IQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNP 260
           ++ G+ P  +TY  L+ GLC   ++++A KVL  M+ +     T   N  +  LC     
Sbjct: 328 LREGFDPDIYTYNSLISGLCKLGEVDEAVKVLNQMIERDCSPNTVTYNTIISTLCKENQV 387

Query: 261 TELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTT 320
            E   + + +      PDV T N++I G C       A+++  +M   K C PD  T+  
Sbjct: 388 EEATKLALVLTGKGILPDVCTYNSLIQGLCLSRNHTVAMELYKEM-KTKGCHPDEFTYNM 446

Query: 321 IIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI 380
           +I  L   G++QEALNLL + M   G +  ++TYN ++ G  + +R+ EA+E+F+ M   
Sbjct: 447 LIDSLCFRGKLQEALNLLKE-MEVSGCARNVITYNTLIDGFCKNKRIAEAEEIFDQMELQ 505

Query: 381 GVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEA 440
           GV  +S TY  +IDGLC+S +++EA +  D ++      D + Y +++   C++G I +A
Sbjct: 506 GVSRNSVTYNTLIDGLCKSERVEEASQLMDQMIMEGLRPDKFTYNSLLTYFCKAGDIKKA 565

Query: 441 VHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLN 488
              +  +   G  P+IV Y  +I G CK      A ++LR ++  G+N
Sbjct: 566 ADIVQTMASDGCEPDIVTYGTLIAGLCKAGRVEAATKLLRTIQMKGIN 613



 Score =  168 bits (425), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 118/401 (29%), Positives = 197/401 (49%), Gaps = 10/401 (2%)

Query: 102 VNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRV 161
           ++N +    ++S    G  NE+ +  + M     V    A  H  + L     +    ++
Sbjct: 122 IDNDSLLVFIESYASFGLYNEILQFVDAMEVEFGV---VANTHFYNFLLNVLVDGNKLKL 178

Query: 162 VYV----MRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVE 217
           V +    M  RG+ P + ++N ++  LC+      A  L+EE   FG LP E T+  +++
Sbjct: 179 VEIAHSNMVSRGIRPDVSTFNILIKALCRAHQIRPAILLMEEMEDFGLLPDEKTFTTIMQ 238

Query: 218 GLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM-LQTQCQ 276
           G   E +L+ A +V + M+    V      N+ +   C      E L  +  M L+    
Sbjct: 239 GFIEEGNLDGAMRVKEQMVEAGCVVTNVTVNVLVNGFCKEGRIEEALRFIEEMSLREGFF 298

Query: 277 PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALN 336
           PD  T N ++NG  K G ++ AL+V++ M+   F  PD  T+ ++I GL  +G + EA+ 
Sbjct: 299 PDKYTFNMLVNGLSKTGHVKHALEVMDMMLREGF-DPDIYTYNSLISGLCKLGEVDEAVK 357

Query: 337 LLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 396
           +L Q M +R  SP  VTYN ++  L +  +VEEA ++   + G G++ D  TY  +I GL
Sbjct: 358 VLNQ-MIERDCSPNTVTYNTIISTLCKENQVEEATKLALVLTGKGILPDVCTYNSLIQGL 416

Query: 397 CESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNI 456
           C S     A   + ++       D + Y  +I  LC  GK+ EA++ L E+  SG   N+
Sbjct: 417 CLSRNHTVAMELYKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEALNLLKEMEVSGCARNV 476

Query: 457 VCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           + YN +IDG CK     EA +I  +M   G++ ++VT+  L
Sbjct: 477 ITYNTLIDGFCKNKRIAEAEEIFDQMELQGVSRNSVTYNTL 517



 Score =  158 bits (399), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 120/449 (26%), Positives = 209/449 (46%), Gaps = 47/449 (10%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC L  V EA K+   M  R   PN V+Y T+I   C+  +++ A K+   +   G+LP+
Sbjct: 346 LCKLGEVDEAVKVLNQMIERDCSPNTVTYNTIISTLCKENQVEEATKLALVLTGKGILPD 405

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             TY+ L++G+  +R+    + +  +L++ MK  +    +   +  L+DSLC  G + E 
Sbjct: 406 VCTYNSLIQGLCLSRN----HTVAMELYKEMK-TKGCHPDEFTYNMLIDSLCFRGKLQEA 460

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             + ++M              +ID  C++ R   A  +   M  +G++ + V+YN+++ G
Sbjct: 461 LNLLKEMEVSGCARNVITYNTLIDGFCKNKRIAEAEEIFDQMELQGVSRNSVTYNTLIDG 520

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LCK      A QL+++ I  G  P + TY  L+   C   D++KA  ++Q M S      
Sbjct: 521 LCKSERVEEASQLMDQMIMEGLRPDKFTYNSLLTYFCKAGDIKKAADIVQTMASDG---- 576

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                                          C+PD++T  T+I G CK GR+E A K+L 
Sbjct: 577 -------------------------------CEPDIVTYGTLIAGLCKAGRVEAATKLLR 605

Query: 304 DM-VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
            + + G    P A  +  +I  L    R +EA+  L++ M ++  +P  VTY  V RGL 
Sbjct: 606 TIQMKGINLTPHA--YNPVIQALFRRKRSKEAVR-LFREMIEKAEAPDAVTYKIVFRGLC 662

Query: 363 R-LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
           +    + EA +    ML  G V + +++ ++ +GL     +    +  D ++  +   DN
Sbjct: 663 QGGGPIGEAVDFVMEMLERGYVPEFSSFYMLAEGLFSLAMVGTLIKLIDMVMEKAKFSDN 722

Query: 422 YVYAAMIKGLCRSGKIHEAVHFLYELVDS 450
            V   MI+G  +  K  +A+  L  ++DS
Sbjct: 723 EV--TMIRGFLKISKYQDALATLGGILDS 749



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 96/382 (25%), Positives = 172/382 (45%), Gaps = 38/382 (9%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +  LC  ++V EA KL   +  +G +P+V +Y +LI G C +    VA +++ EM+  G 
Sbjct: 378 ISTLCKENQVEEATKLALVLTGKGILPDVCTYNSLIQGLCLSRNHTVAMELYKEMKTKGC 437

Query: 61  LPNSLTYSVLV-----RGVLR--------------TRDVERANVLM--FKLWERMKEEED 99
            P+  TY++L+     RG L+               R+V   N L+  F   +R+ E E+
Sbjct: 438 HPDEFTYNMLIDSLCFRGKLQEALNLLKEMEVSGCARNVITYNTLIDGFCKNKRIAEAEE 497

Query: 100 L---------SVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC 150
           +         S N+  +  L+D LC+   V E  ++ + M       ++F    ++   C
Sbjct: 498 IFDQMELQGVSRNSVTYNTLIDGLCKSERVEEASQLMDQMIMEGLRPDKFTYNSLLTYFC 557

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
           ++G    A+ +V  M   G  P +V+Y +++ GLCK G    A +LL      G   + H
Sbjct: 558 KAGDIKKAADIVQTMASDGCEPDIVTYGTLIAGLCKAGRVEAATKLLRTIQMKGINLTPH 617

Query: 211 TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPT-ELLNVLVF 269
            Y  +++ L      ++A ++ + M+ K +        I  R LC    P  E ++ ++ 
Sbjct: 618 AYNPVIQALFRRKRSKEAVRLFREMIEKAEAPDAVTYKIVFRGLCQGGGPIGEAVDFVME 677

Query: 270 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG 329
           ML+    P+  +   +  G   +  +   +K++ DMV  K    D     T+I G L + 
Sbjct: 678 MLERGYVPEFSSFYMLAEGLFSLAMVGTLIKLI-DMVMEKAKFSD--NEVTMIRGFLKIS 734

Query: 330 RIQEALNLLYQVM----PQRGY 347
           + Q+AL  L  ++    P R Y
Sbjct: 735 KYQDALATLGGILDSRKPNRAY 756



 Score = 48.1 bits (113), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 40/182 (21%), Positives = 76/182 (41%), Gaps = 6/182 (3%)

Query: 335 LNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVID 394
           ++L Y    Q  + P    +  VL  L +    +  K++   M     V D+ +  + I+
Sbjct: 73  IHLFYWASKQPNFKPSSSIFKEVLHKLGKAGEFDAMKDILKEMKISLSVIDNDSLLVFIE 132

Query: 395 GLCESNQLDEAKRFWDDI-VWPSNIHDNYVYAAMIKGLCRSGKIH--EAVHFLYELVDSG 451
                   +E  +F D + V    + + + Y  ++  L    K+   E  H    +V  G
Sbjct: 133 SYASFGLYNEILQFVDAMEVEFGVVANTHFYNFLLNVLVDGNKLKLVEIAH--SNMVSRG 190

Query: 452 VTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN-DFGL 510
           + P++  +N++I   C+    R A  ++ EM   GL PD  T+  + +     GN D  +
Sbjct: 191 IRPDVSTFNILIKALCRAHQIRPAILLMEEMEDFGLLPDEKTFTTIMQGFIEEGNLDGAM 250

Query: 511 RI 512
           R+
Sbjct: 251 RV 252


>gi|255558280|ref|XP_002520167.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540659|gb|EEF42222.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 604

 Score =  212 bits (540), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 135/506 (26%), Positives = 239/506 (47%), Gaps = 42/506 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M+ L  L ++ EAH L   M+ +G +P+VVSYTT+I GYC  GE+    ++  EM+  G+
Sbjct: 117 MNSLFRLGKIREAHHLLMRMEFKGCIPDVVSYTTIIDGYCHVGELQKVVQLVKEMQLKGL 176

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN  TYS ++  + ++  V     ++ ++ +R      +  ++  +  L+D  C+ G  
Sbjct: 177 KPNLYTYSSIILLLCKSGKVVEGEKVLREMMKR-----GVFPDHVIYTTLIDGFCKLGNT 231

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
              +++  +M   + V +  A   +I  L  SG+   A ++   M K+G  P  V+Y ++
Sbjct: 232 QAAYKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFEPDEVTYTAL 291

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G CK G   +A+ L  + +Q G  P+  TY  L +GLC   +L+ A ++L  M  K  
Sbjct: 292 IDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKSGELDTANELLHEMCRKG- 350

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                              Q ++ T NT++NG CK G I +A+K
Sbjct: 351 ----------------------------------LQLNISTYNTIVNGLCKAGNILQAVK 376

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           ++ +M       PD +T+TT++      G + +A  LL + M  RG  P +VT+N ++ G
Sbjct: 377 LMEEMKEAGL-HPDTITYTTLMDAYYKTGEMVKARELLRE-MLDRGLQPTVVTFNVLMNG 434

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L    ++E+ + +   ML  G++ ++ TY  ++   C  N +  +   +  +     + D
Sbjct: 435 LCMSGKLEDGERLLKWMLEKGIMPNAATYNSIMKQYCIRNNMRISTEIYRGMCAQGVVPD 494

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
           +  Y  +IKG C++  + EA     E+V+         YN +I G  K     EA Q+  
Sbjct: 495 SNTYNILIKGHCKARNMKEAWFLHKEMVEKRFNLTASSYNALIKGFFKRKKLLEARQLFE 554

Query: 481 EMRKNGLNPDAVTWRILDKLHGNRGN 506
           EMR+ GL   A  + +   ++   GN
Sbjct: 555 EMRREGLVASAEIYNLFVDMNYEEGN 580



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 110/410 (26%), Positives = 213/410 (51%), Gaps = 7/410 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   +V E  K+  +M  RG  P+ V YTTLI G+C+ G    AYK+F EM    ++P+
Sbjct: 190 LCKSGKVVEGEKVLREMMKRGVFPDHVIYTTLIDGFCKLGNTQAAYKLFSEMEAREIVPD 249

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           S+ +S L+ G+  +  V  A+ L  ++ ++  E ++++     +  L+D  C+ G + + 
Sbjct: 250 SIAFSALICGLSGSGKVVEADKLFNEMIKKGFEPDEVT-----YTALIDGYCKLGEMKKA 304

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           F +   M Q            + D LC+SG    A+ +++ M ++GL  ++ +YN+IV+G
Sbjct: 305 FFLHNQMVQIGLTPNVVTYTALADGLCKSGELDTANELLHEMCRKGLQLNISTYNTIVNG 364

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LCK G  ++A +L+EE  + G  P   TY  L++      ++ KAR++L+ ML +     
Sbjct: 365 LCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYKTGEMVKARELLREMLDRGLQPT 424

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               N+ +  LC+     +   +L +ML+    P+  T N+++  +C    +  + ++  
Sbjct: 425 VVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAATYNSIMKQYCIRNNMRISTEIYR 484

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            M A +   PD+ T+  +I G      ++EA   L++ M ++ ++    +YNA+++G F+
Sbjct: 485 GMCA-QGVVPDSNTYNILIKGHCKARNMKEAW-FLHKEMVEKRFNLTASSYNALIKGFFK 542

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413
            +++ EA+++F  M   G+VA +  Y + +D   E   ++      D+ +
Sbjct: 543 RKKLLEARQLFEEMRREGLVASAEIYNLFVDMNYEEGNMETTLELCDEAI 592



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 117/493 (23%), Positives = 232/493 (47%), Gaps = 43/493 (8%)

Query: 14  HKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRG 73
            +L +  K  G  P+V  +          G ++ A K FD++ + GV  ++ + ++ +  
Sbjct: 26  ERLIYTYKDWGSDPHV--FDVFFQVLVEAGLLNEARKFFDKLLNYGVALSAGSCNLYLTC 83

Query: 74  VLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQG 133
           +   RD+    + +F  + ++     +  N  ++  L++SL R G + E   +   M   
Sbjct: 84  LSSKRDMLGMVLKVFSEFPQL----GVCWNTESYNILMNSLFRLGKIREAHHLLMRMEFK 139

Query: 134 KSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRA 193
             + +  +   +ID  C  G      ++V  M+ +GL P+L +Y+SI+  LCK G  +  
Sbjct: 140 GCIPDVVSYTTIIDGYCHVGELQKVVQLVKEMQLKGLKPNLYTYSSIILLLCKSGKVVEG 199

Query: 194 YQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRA 253
            ++L E ++ G  P    Y  L++G C   + + A K+   M +++ V            
Sbjct: 200 EKVLREMMKRGVFPDHVIYTTLIDGFCKLGNTQAAYKLFSEMEAREIV------------ 247

Query: 254 LCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAP 313
                                  PD I  + +I G    G++ EA K+ N+M+   F  P
Sbjct: 248 -----------------------PDSIAFSALICGLSGSGKVVEADKLFNEMIKKGF-EP 283

Query: 314 DAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEV 373
           D VT+T +I G   +G +++A   L+  M Q G +P +VTY A+  GL +   ++ A E+
Sbjct: 284 DEVTYTALIDGYCKLGEMKKAF-FLHNQMVQIGLTPNVVTYTALADGLCKSGELDTANEL 342

Query: 374 FNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR 433
            + M   G+  + +TY  +++GLC++  + +A +  +++       D   Y  ++    +
Sbjct: 343 LHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYK 402

Query: 434 SGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVT 493
           +G++ +A   L E++D G+ P +V +NV+++G C      +  ++L+ M + G+ P+A T
Sbjct: 403 TGEMVKARELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAAT 462

Query: 494 WRILDKLHGNRGN 506
           +  + K +  R N
Sbjct: 463 YNSIMKQYCIRNN 475



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 50/229 (21%), Positives = 97/229 (42%), Gaps = 30/229 (13%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC    + +A KL  +MK  G  P+ ++YTTL+  Y +TGEM  A ++  EM   G+ P 
Sbjct: 365 LCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYKTGEMVKARELLREMLDRGLQPT 424

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWER------------MKE--------------- 96
            +T++VL+ G+  +  +E    L+  + E+            MK+               
Sbjct: 425 VVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAATYNSIMKQYCIRNNMRISTEIYR 484

Query: 97  ---EEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSG 153
               + +  ++  +  L+   C+   + E + + ++M + +      +   +I    +  
Sbjct: 485 GMCAQGVVPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKRFNLTASSYNALIKGFFKRK 544

Query: 154 RNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQ 202
           +   A ++   MR+ GL  S   YN  V    + G      +L +E I+
Sbjct: 545 KLLEARQLFEEMRREGLVASAEIYNLFVDMNYEEGNMETTLELCDEAIE 593


>gi|357494039|ref|XP_003617308.1| Auxin response factor [Medicago truncatula]
 gi|355518643|gb|AET00267.1| Auxin response factor [Medicago truncatula]
          Length = 948

 Score =  212 bits (540), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 144/498 (28%), Positives = 241/498 (48%), Gaps = 12/498 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M   C ++ V  A  L  DM   G VPN + Y  LIH       ++ A K+ +EM   G 
Sbjct: 207 MKAFCMVNEVDSACSLLRDMTKHGCVPNSIIYQMLIHALSENNRVNEAMKLLEEMFLMGC 266

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+  T++ ++ G+ +   +  A     KL +RM    D + +      L+  LCR G V
Sbjct: 267 EPDVQTFNDVIHGLCKAGRIHEAA----KLHDRMLLR-DFTADALIQGYLMHGLCRMGKV 321

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYV-MRKRGLTPSLVSYNS 179
           +E   +   +P   +V        +I+    SGR   A  ++Y  M   G  P   ++N 
Sbjct: 322 DEARAMLSKIPNPNTV----LYNTLINGYVVSGRFEEAKDLLYKNMVIAGFEPDAFTFNI 377

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++ GLCK G  + A + L+E ++ G+ P+  TY +L++G C +   E+A KV+  M +K 
Sbjct: 378 MIDGLCKKGYLVSALEFLDEMVKKGFEPNVITYTILIDGFCKQGHFEEASKVVNSMSAKG 437

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
               T   N  + ALC      + L +   M    C+PD+ T N++I G CK  ++EEAL
Sbjct: 438 LSLNTVGYNCLIGALCKDGKIQDALQMYGEMSSKGCKPDIYTFNSLIYGLCKNDKMEEAL 497

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
            +  DM+     A + VT+ T+I   L +  IQ+A  L+ + M  RG     +TYN +++
Sbjct: 498 GLYRDMLLEGVIA-NTVTYNTLIHAFLRLELIQQADKLVGE-MRFRGCPLDNITYNGLIK 555

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
            L +    E+   +   M G  +     +  I+I+  C + ++++A +F  D++      
Sbjct: 556 ALCKTGATEKCLGLIEQMFGEEIFPSINSCNILINSFCRTGKVNDALQFLRDMIQRGLTP 615

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           D   Y ++I GLC+ G+  EA++    L   G+ P+ V YN +I   C   +  +A Q+L
Sbjct: 616 DIVTYNSLINGLCKMGRFQEALNLFNGLQAKGIHPDAVTYNTLISRYCYEGLFNDACQLL 675

Query: 480 REMRKNGLNPDAVTWRIL 497
            +   NG  P+ +TW IL
Sbjct: 676 FKGVSNGFIPNEITWSIL 693



 Score =  194 bits (494), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 132/486 (27%), Positives = 233/486 (47%), Gaps = 47/486 (9%)

Query: 13  AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVR 72
           A  +F+DM SRG  P V ++  ++  +C   E+D A  +  +M   G +PNS+ Y +L+ 
Sbjct: 184 APNVFYDMLSRGISPTVYTFGVVMKAFCMVNEVDSACSLLRDMTKHGCVPNSIIYQMLIH 243

Query: 73  GVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQ 132
            +     V  A  L+ +++  M  E D+      F +++  LC+ G ++E  ++ + M  
Sbjct: 244 ALSENNRVNEAMKLLEEMF-LMGCEPDVQ----TFNDVIHGLCKAGRIHEAAKLHDRMLL 298

Query: 133 GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMR 192
                +    G+++  LCR G+   A      M  +   P+ V YN++++G    G    
Sbjct: 299 RDFTADALIQGYLMHGLCRMGKVDEAR----AMLSKIPNPNTVLYNTLINGYVVSGRFEE 354

Query: 193 AYQLLEEGIQF-GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYL 251
           A  LL + +   G+ P   T+ ++++GLC +  L  A + L  M+ K             
Sbjct: 355 AKDLLYKNMVIAGFEPDAFTFNIMIDGLCKKGYLVSALEFLDEMVKKG------------ 402

Query: 252 RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC 311
                                   +P+VIT   +I+GFCK G  EEA KV+N M A K  
Sbjct: 403 -----------------------FEPNVITYTILIDGFCKQGHFEEASKVVNSMSA-KGL 438

Query: 312 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK 371
           + + V +  +I  L   G+IQ+AL + Y  M  +G  P I T+N+++ GL +  ++EEA 
Sbjct: 439 SLNTVGYNCLIGALCKDGKIQDALQM-YGEMSSKGCKPDIYTFNSLIYGLCKNDKMEEAL 497

Query: 372 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 431
            ++  ML  GV+A++ TY  +I        + +A +   ++ +     DN  Y  +IK L
Sbjct: 498 GLYRDMLLEGVIANTVTYNTLIHAFLRLELIQQADKLVGEMRFRGCPLDNITYNGLIKAL 557

Query: 432 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 491
           C++G   + +  + ++    + P+I   N++I+  C+     +A Q LR+M + GL PD 
Sbjct: 558 CKTGATEKCLGLIEQMFGEEIFPSINSCNILINSFCRTGKVNDALQFLRDMIQRGLTPDI 617

Query: 492 VTWRIL 497
           VT+  L
Sbjct: 618 VTYNSL 623



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 124/478 (25%), Positives = 214/478 (44%), Gaps = 11/478 (2%)

Query: 23  RGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVER 82
           RG++ +   Y  LI      GE  +  K+  +M+  G +     + +++R   +     +
Sbjct: 88  RGYIHSFHVYYLLIDKLGNVGEFKMIDKLLKQMKDEGCVFKESLFILIMRYYGKAGLPGQ 147

Query: 83  ANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFAC 142
           A  L+  +W     E      N     LV   C +   N  +    DM         +  
Sbjct: 148 ATRLLLDMWGVYCFEPTFKSYNVVLEILVAGNCPKVAPNVFY----DMLSRGISPTVYTF 203

Query: 143 GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQ 202
           G ++ + C       A  ++  M K G  P+ + Y  ++H L ++     A +LLEE   
Sbjct: 204 GVVMKAFCMVNEVDSACSLLRDMTKHGCVPNSIIYQMLIHALSENNRVNEAMKLLEEMFL 263

Query: 203 FGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTE 262
            G  P   T+  ++ GLC    + +A K+   ML +       I    +  LC +    E
Sbjct: 264 MGCEPDVQTFNDVIHGLCKAGRIHEAAKLHDRMLLRDFTADALIQGYLMHGLCRMGKVDE 323

Query: 263 LLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL-NDMVAGKFCAPDAVTFTTI 321
                  ML     P+ +  NT+ING+   GR EEA  +L  +MV   F  PDA TF  +
Sbjct: 324 ARA----MLSKIPNPNTVLYNTLINGYVVSGRFEEAKDLLYKNMVIAGF-EPDAFTFNIM 378

Query: 322 IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG 381
           I GL   G +  AL  L + M ++G+ P ++TY  ++ G  +    EEA +V N M   G
Sbjct: 379 IDGLCKKGYLVSALEFLDE-MVKKGFEPNVITYTILIDGFCKQGHFEEASKVVNSMSAKG 437

Query: 382 VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAV 441
           +  ++  Y  +I  LC+  ++ +A + + ++       D Y + ++I GLC++ K+ EA+
Sbjct: 438 LSLNTVGYNCLIGALCKDGKIQDALQMYGEMSSKGCKPDIYTFNSLIYGLCKNDKMEEAL 497

Query: 442 HFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
               +++  GV  N V YN +I    +L + ++A +++ EMR  G   D +T+  L K
Sbjct: 498 GLYRDMLLEGVIANTVTYNTLIHAFLRLELIQQADKLVGEMRFRGCPLDNITYNGLIK 555



 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 93/337 (27%), Positives = 150/337 (44%), Gaps = 43/337 (12%)

Query: 198 EEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR-------------- 243
           + G+Q GY+ S H Y +L++ L    + +   K+L+ M  +  V +              
Sbjct: 83  KAGLQRGYIHSFHVYYLLIDKLGNVGEFKMIDKLLKQMKDEGCVFKESLFILIMRYYGKA 142

Query: 244 ------TRIC----------------NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVIT 281
                 TR+                 N+ L  L     P    NV   ML     P V T
Sbjct: 143 GLPGQATRLLLDMWGVYCFEPTFKSYNVVLEILVAGNCPKVAPNVFYDMLSRGISPTVYT 202

Query: 282 LNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQV 341
              V+  FC +  ++ A  +L DM     C P+++ +  +I  L    R+ EA+ LL + 
Sbjct: 203 FGVVMKAFCMVNEVDSACSLLRDMTKHG-CVPNSIIYQMLIHALSENNRVNEAMKLLEE- 260

Query: 342 MPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ 401
           M   G  P + T+N V+ GL +  R+ EA ++ + ML     AD+     ++ GLC   +
Sbjct: 261 MFLMGCEPDVQTFNDVIHGLCKAGRIHEAAKLHDRMLLRDFTADALIQGYLMHGLCRMGK 320

Query: 402 LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE-LVDSGVTPNIVCYN 460
           +DEA+     I  P+ +    +Y  +I G   SG+  EA   LY+ +V +G  P+   +N
Sbjct: 321 VDEARAMLSKIPNPNTV----LYNTLINGYVVSGRFEEAKDLLYKNMVIAGFEPDAFTFN 376

Query: 461 VVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           ++IDG CK      A + L EM K G  P+ +T+ IL
Sbjct: 377 IMIDGLCKKGYLVSALEFLDEMVKKGFEPNVITYTIL 413



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 67/214 (31%), Positives = 112/214 (52%), Gaps = 7/214 (3%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   ++ EA  L+ DM   G + N V+Y TLIH + R   +  A K+  EMR  G   +
Sbjct: 487 LCKNDKMEEALGLYRDMLLEGVIANTVTYNTLIHAFLRLELIQQADKLVGEMRFRGCPLD 546

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDL-SVNNAAFANLVDSLCREGYVNE 122
           ++TY+ L++ + +T   E+       L E+M  EE   S+N+     L++S CR G VN+
Sbjct: 547 NITYNGLIKALCKTGATEKC----LGLIEQMFGEEIFPSINSCNI--LINSFCRTGKVND 600

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
             +   DM Q     +      +I+ LC+ GR   A  +   ++ +G+ P  V+YN+++ 
Sbjct: 601 ALQFLRDMIQRGLTPDIVTYNSLINGLCKMGRFQEALNLFNGLQAKGIHPDAVTYNTLIS 660

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLV 216
             C  G    A QLL +G+  G++P+E T+ +L+
Sbjct: 661 RYCYEGLFNDACQLLFKGVSNGFIPNEITWSILI 694



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 50/88 (56%), Gaps = 1/88 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC + R  EA  LF  ++++G  P+ V+Y TLI  YC  G  + A ++  +    G 
Sbjct: 624 INGLCKMGRFQEALNLFNGLQAKGIHPDAVTYNTLISRYCYEGLFNDACQLLFKGVSNGF 683

Query: 61  LPNSLTYSVLVRGVLRTR-DVERANVLM 87
           +PN +T+S+L+   ++   D E+  +LM
Sbjct: 684 IPNEITWSILINYFVKNNSDSEQFTILM 711


>gi|449444190|ref|XP_004139858.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
 gi|449530677|ref|XP_004172320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 839

 Score =  212 bits (540), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 137/494 (27%), Positives = 237/494 (47%), Gaps = 46/494 (9%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   +V EA  +   +   G  P+  +YT+LI G+C+ G +D+A+++FD M   G  PN
Sbjct: 212 LCNKGKVQEAELIMGHIFHYGACPDTFTYTSLIIGHCKNGNLDLAFEMFDRMVKDGCDPN 271

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           S+TYS L+ G                                        LC EG + E 
Sbjct: 272 SVTYSALING----------------------------------------LCSEGRLEEA 291

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             + E+M          A    I SLC +GR+  A +++  M+KRG  P++ +Y +++ G
Sbjct: 292 MDMLEEMIDKGIEPTVHAYTIPIVSLCDAGRSCEAVKLLGKMKKRGCGPNVQTYTALISG 351

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           L + G    A  +  + +  G +P+  TY  L+  L  E   E A  + ++MLS   +  
Sbjct: 352 LSRDGKFEVAIGVYHKMLADGLVPTAVTYSALINQLYVEGRFETALTIFEWMLSHDSLPN 411

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
           T   N+ ++  C I    +   +   ML+    P+VIT N +I+ + K G +  A+++L 
Sbjct: 412 TETYNVIIKGFCSIGYIQKATAIFDQMLKAGPSPNVITYNIIIHIYFKQGYMNNAMRLL- 470

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           +M+ G     D  T+  +I G    G+++ A + L+  M + G SP +VTYNA++ G   
Sbjct: 471 EMMKGNGLKLDTWTYANLISGFSRGGKLEHAFS-LFNEMVEHGISPNVVTYNAIINGYLT 529

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
           + +V++A  +F  M+  G V  S TY ++I G  ++N++ EA+ F   +V    + +   
Sbjct: 530 VAKVDDALALFWKMVESGNVPSSGTYNMMISGFSKTNRISEAENFCGKMVKQGLLPNVIT 589

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y + I GLC++G+   A    +E+      PN+  Y+ +IDG C+     +A ++L    
Sbjct: 590 YTSFIDGLCKNGRTSLAFKIFHEMKKRDYFPNLCTYSSLIDGLCQEGQAEDAERLL---- 645

Query: 484 KNGLNPDAVTWRIL 497
            +G  P+  T+  L
Sbjct: 646 DDGCEPNVDTYTTL 659



 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 139/597 (23%), Positives = 256/597 (42%), Gaps = 110/597 (18%)

Query: 3   QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           QL      G    ++ +M + G  PN+ ++  +I   C  G++  A  +   + H G  P
Sbjct: 176 QLGKFDMDGLGRDVYIEMLNSGIRPNLFTFNAMIKILCNKGKVQEAELIMGHIFHYGACP 235

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           ++ TY+ L+ G  +  +++    L F++++RM ++     N+  ++ L++ LC EG + E
Sbjct: 236 DTFTYTSLIIGHCKNGNLD----LAFEMFDRMVKD-GCDPNSVTYSALINGLCSEGRLEE 290

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
              + E+M          A    I SLC +GR+  A +++  M+KRG  P++ +Y +++ 
Sbjct: 291 AMDMLEEMIDKGIEPTVHAYTIPIVSLCDAGRSCEAVKLLGKMKKRGCGPNVQTYTALIS 350

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           GL + G    A  +  + +  G +P+  TY  L+  L  E   E A  + ++MLS   + 
Sbjct: 351 GLSRDGKFEVAIGVYHKMLADGLVPTAVTYSALINQLYVEGRFETALTIFEWMLSHDSLP 410

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVI---------------- 286
            T   N+ ++  C I    +   +   ML+    P+VIT N +I                
Sbjct: 411 NTETYNVIIKGFCSIGYIQKATAIFDQMLKAGPSPNVITYNIIIHIYFKQGYMNNAMRLL 470

Query: 287 -------------------NGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLN 327
                              +GF + G++E A  + N+MV     +P+ VT+  II G L 
Sbjct: 471 EMMKGNGLKLDTWTYANLISGFSRGGKLEHAFSLFNEMVEHGI-SPNVVTYNAIINGYLT 529

Query: 328 VGRIQEALNLLYQV----------------------------------MPQRGYSPGIVT 353
           V ++ +AL L +++                                  M ++G  P ++T
Sbjct: 530 VAKVDDALALFWKMVESGNVPSSGTYNMMISGFSKTNRISEAENFCGKMVKQGLLPNVIT 589

Query: 354 YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413
           Y + + GL +  R   A ++F+ M       +  TY+ +IDGLC+  Q ++A+R  DD  
Sbjct: 590 YTSFIDGLCKNGRTSLAFKIFHEMKKRDYFPNLCTYSSLIDGLCQEGQAEDAERLLDDGC 649

Query: 414 WPSNIHDNY---------------------------------VYAAMIKGLCRSGKIHEA 440
            P N+ D Y                                 +Y A++ G C++ ++  A
Sbjct: 650 EP-NV-DTYTTLVRGLCGKGRCYEADQLVESMKKKGLQPSEEIYRALLVGQCKNLEVESA 707

Query: 441 VHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           +     +V +G  P +  Y  +I   CK + +++A  + + M K   N D V W +L
Sbjct: 708 LKIFDSMVTTGFQPCLSDYKALICALCKANFRQKAQCMFQTMLKKHWNSDEVVWTVL 764



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 118/466 (25%), Positives = 210/466 (45%), Gaps = 11/466 (2%)

Query: 3   QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
            LC   R  EA KL   MK RG  PNV +YT LI G  R G+ +VA  V+ +M   G++P
Sbjct: 316 SLCDAGRSCEAVKLLGKMKKRGCGPNVQTYTALISGLSRDGKFEVAIGVYHKMLADGLVP 375

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
            ++TYS L+  +      E A      ++E M   + L  N   +  ++   C  GY+ +
Sbjct: 376 TAVTYSALINQLYVEGRFETA----LTIFEWMLSHDSLP-NTETYNVIIKGFCSIGYIQK 430

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
              I + M +            +I    + G  + A R++ +M+  GL     +Y +++ 
Sbjct: 431 ATAIFDQMLKAGPSPNVITYNIIIHIYFKQGYMNNAMRLLEMMKGNGLKLDTWTYANLIS 490

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           G  + G    A+ L  E ++ G  P+  TY  ++ G    + ++ A  +   M+   +V 
Sbjct: 491 GFSRGGKLEHAFSLFNEMVEHGISPNVVTYNAIINGYLTVAKVDDALALFWKMVESGNVP 550

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
            +   N+ +         +E  N    M++    P+VIT  + I+G CK GR   A K+ 
Sbjct: 551 SSGTYNMMISGFSKTNRISEAENFCGKMVKQGLLPNVITYTSFIDGLCKNGRTSLAFKIF 610

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
           ++M    +  P+  T++++I GL   G+ ++A  LL       G  P + TY  ++RGL 
Sbjct: 611 HEMKKRDY-FPNLCTYSSLIDGLCQEGQAEDAERLL-----DDGCEPNVDTYTTLVRGLC 664

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
              R  EA ++   M   G+      Y  ++ G C++ +++ A + +D +V         
Sbjct: 665 GKGRCYEADQLVESMKKKGLQPSEEIYRALLVGQCKNLEVESALKIFDSMVTTGFQPCLS 724

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACK 468
            Y A+I  LC++    +A      ++      + V + V++DG  K
Sbjct: 725 DYKALICALCKANFRQKAQCMFQTMLKKHWNSDEVVWTVLLDGLLK 770



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 100/438 (22%), Positives = 176/438 (40%), Gaps = 81/438 (18%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++QL    R   A  +F  M S   +PN  +Y  +I G+C  G +  A  +FD+M   G 
Sbjct: 384 INQLYVEGRFETALTIFEWMLSHDSLPNTETYNVIIKGFCSIGYIQKATAIFDQMLKAGP 443

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +TY++++    +   +  A     +L E MK    L ++   +ANL+    R G +
Sbjct: 444 SPNVITYNIIIHIYFKQGYMNNA----MRLLEMMK-GNGLKLDTWTYANLISGFSRGGKL 498

Query: 121 NEVFRIAEDMPQG-------------------KSVNEEFAC----------------GHM 145
              F +  +M +                      V++  A                   M
Sbjct: 499 EHAFSLFNEMVEHGISPNVVTYNAIINGYLTVAKVDDALALFWKMVESGNVPSSGTYNMM 558

Query: 146 IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY 205
           I    ++ R   A      M K+GL P++++Y S + GLCK+G    A+++  E  +  Y
Sbjct: 559 ISGFSKTNRISEAENFCGKMVKQGLLPNVITYTSFIDGLCKNGRTSLAFKIFHEMKKRDY 618

Query: 206 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 265
            P+  TY  L++GLC E   E A +                                   
Sbjct: 619 FPNLCTYSSLIDGLCQEGQAEDAER----------------------------------- 643

Query: 266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 325
               +L   C+P+V T  T++ G C  GR  EA +++  M   K   P    +  ++ G 
Sbjct: 644 ----LLDDGCEPNVDTYTTLVRGLCGKGRCYEADQLVESM-KKKGLQPSEEIYRALLVGQ 698

Query: 326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 385
                ++ AL  ++  M   G+ P +  Y A++  L +    ++A+ +F  ML     +D
Sbjct: 699 CKNLEVESALK-IFDSMVTTGFQPCLSDYKALICALCKANFRQKAQCMFQTMLKKHWNSD 757

Query: 386 STTYAIVIDGLCESNQLD 403
              + +++DGL +  + D
Sbjct: 758 EVVWTVLLDGLLKEGETD 775



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 94/350 (26%), Positives = 153/350 (43%), Gaps = 73/350 (20%)

Query: 157 GASRVVYV-MRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVL 215
           G  R VY+ M   G+ P+L ++N+++  LC  G    A  ++     +G  P   TY  L
Sbjct: 184 GLGRDVYIEMLNSGIRPNLFTFNAMIKILCNKGKVQEAELIMGHIFHYGACPDTFTYTSL 243

Query: 216 VEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQC 275
           + G C   +L+ A ++          DR                          M++  C
Sbjct: 244 IIGHCKNGNLDLAFEMF---------DR--------------------------MVKDGC 268

Query: 276 QPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEAL 335
            P+ +T + +ING C  GR+EEA+ +L +M+  K   P    +T  I  L + GR  EA+
Sbjct: 269 DPNSVTYSALINGLCSEGRLEEAMDMLEEMI-DKGIEPTVHAYTIPIVSLCDAGRSCEAV 327

Query: 336 NLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG 395
            LL + M +RG  P + TY A++ GL R  + E A  V++ ML  G+V  + TY+ +I  
Sbjct: 328 KLLGK-MKKRGCGPNVQTYTALISGLSRDGKFEVAIGVYHKMLADGLVPTAVTYSALI-- 384

Query: 396 LCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN 455
               NQL                   YV           G+   A+     ++     PN
Sbjct: 385 ----NQL-------------------YV----------EGRFETALTIFEWMLSHDSLPN 411

Query: 456 IVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
              YNV+I G C +   ++A  I  +M K G +P+ +T+ I+  ++  +G
Sbjct: 412 TETYNVIIKGFCSIGYIQKATAIFDQMLKAGPSPNVITYNIIIHIYFKQG 461



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 105/210 (50%), Gaps = 11/210 (5%)

Query: 293 GRIEEALKVLNDMVAGKFCAPDAVTFTTII-----FGLLNVGRIQEALNLLYQVMPQRGY 347
           G ++  ++VL+++           +F+T++     F +  +GR       +Y  M   G 
Sbjct: 145 GEVKRVIQVLSEINTTYDFGYTLYSFSTLLIQLGKFDMDGLGRD------VYIEMLNSGI 198

Query: 348 SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKR 407
            P + T+NA+++ L    +V+EA+ +   +   G   D+ TY  +I G C++  LD A  
Sbjct: 199 RPNLFTFNAMIKILCNKGKVQEAELIMGHIFHYGACPDTFTYTSLIIGHCKNGNLDLAFE 258

Query: 408 FWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGAC 467
            +D +V      ++  Y+A+I GLC  G++ EA+  L E++D G+ P +  Y + I   C
Sbjct: 259 MFDRMVKDGCDPNSVTYSALINGLCSEGRLEEAMDMLEEMIDKGIEPTVHAYTIPIVSLC 318

Query: 468 KLSMKREAYQILREMRKNGLNPDAVTWRIL 497
                 EA ++L +M+K G  P+  T+  L
Sbjct: 319 DAGRSCEAVKLLGKMKKRGCGPNVQTYTAL 348



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 109/232 (46%), Gaps = 11/232 (4%)

Query: 8   SRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTY 67
           +R+ EA      M  +G +PNV++YT+ I G C+ G   +A+K+F EM+     PN  TY
Sbjct: 566 NRISEAENFCGKMVKQGLLPNVITYTSFIDGLCKNGRTSLAFKIFHEMKKRDYFPNLCTY 625

Query: 68  SVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIA 127
           S L+ G+ +    E A  L+         ++    N   +  LV  LC +G   E  ++ 
Sbjct: 626 SSLIDGLCQEGQAEDAERLL---------DDGCEPNVDTYTTLVRGLCGKGRCYEADQLV 676

Query: 128 EDMPQ-GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK 186
           E M + G   +EE     ++   C++     A ++   M   G  P L  Y +++  LCK
Sbjct: 677 ESMKKKGLQPSEEIYRALLVGQ-CKNLEVESALKIFDSMVTTGFQPCLSDYKALICALCK 735

Query: 187 HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
                +A  + +  ++  +   E  + VL++GL  E + + + ++L  M S+
Sbjct: 736 ANFRQKAQCMFQTMLKKHWNSDEVVWTVLLDGLLKEGETDLSLELLHVMESR 787



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 86/198 (43%)

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
           + +LN +V  +   P       +I    N G ++  + +L ++     +   + +++ +L
Sbjct: 115 VSMLNRLVRDRLFVPADNVRILMIKSCRNEGEVKRVIQVLSEINTTYDFGYTLYSFSTLL 174

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
             L +       ++V+  ML  G+  +  T+  +I  LC   ++ EA+     I      
Sbjct: 175 IQLGKFDMDGLGRDVYIEMLNSGIRPNLFTFNAMIKILCNKGKVQEAELIMGHIFHYGAC 234

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI 478
            D + Y ++I G C++G +  A      +V  G  PN V Y+ +I+G C      EA  +
Sbjct: 235 PDTFTYTSLIIGHCKNGNLDLAFEMFDRMVKDGCDPNSVTYSALINGLCSEGRLEEAMDM 294

Query: 479 LREMRKNGLNPDAVTWRI 496
           L EM   G+ P    + I
Sbjct: 295 LEEMIDKGIEPTVHAYTI 312


>gi|147788022|emb|CAN69338.1| hypothetical protein VITISV_032632 [Vitis vinifera]
          Length = 585

 Score =  212 bits (539), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 127/473 (26%), Positives = 231/473 (48%), Gaps = 7/473 (1%)

Query: 27  PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVL 86
           P+ V +  L+    +T +    + + ++M   G+ P+  T ++L+           A  +
Sbjct: 65  PSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNILINSFCHLNRPGFAFSV 124

Query: 87  MFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMI 146
           + K+ +       L  + A F  L+  LC EG + +   + + M            G +I
Sbjct: 125 LAKILKL-----GLQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLI 179

Query: 147 DSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL 206
           + LC+ G  + A R++  M +    P +V Y SI+  LCK      A+ L  + +  G  
Sbjct: 180 NGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGIS 239

Query: 207 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 266
           P   TY  L+  LC   + +    +L  M++ K +    I +  + ALC     TE  +V
Sbjct: 240 PDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDV 299

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
           +  M+    +P+V+T N +++G C    ++EA+KV + MV   + AP+ +++ T+I G  
Sbjct: 300 VDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGY-APNVISYNTLINGYC 358

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
            + R+ +A   L++ M Q+   P  VTYN ++ GL  + R+++A  +F+ M+  G + D 
Sbjct: 359 KIQRMDKA-TYLFEEMCQKELIPNTVTYNTLMHGLCHVGRLQDAIALFHEMVAHGQIPDL 417

Query: 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE 446
            TY I++D LC+ + LDEA      I   +   D  +Y  +I G+CR+G++  A      
Sbjct: 418 ATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAARDIFSN 477

Query: 447 LVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
           L   G+ PN+  Y ++I+G C+  +  EA ++  EM  NG +PD  T+  + +
Sbjct: 478 LSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCSPDGCTYNTITQ 530



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 131/478 (27%), Positives = 228/478 (47%), Gaps = 7/478 (1%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M S G  P+V +   LI+ +C       A+ V  ++   G+ P++ T++ L+RG+     
Sbjct: 93  MDSFGIPPDVYTLNILINSFCHLNRPGFAFSVLAKILKLGLQPDTATFTTLIRGLCVEGK 152

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
           +  A      L+++M  E     N   +  L++ LC+ G  N   R+   M QG    + 
Sbjct: 153 IGDA----LHLFDKMIGE-GFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDV 207

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
                +IDSLC+  +   A  +   M  +G++P + +Y S++H LC          LL +
Sbjct: 208 VVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQ 267

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
            I    +P    +  +V+ LC E  + +A  V+  M+ +         N  +   CL   
Sbjct: 268 MINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSE 327

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
             E + V   M+     P+VI+ NT+ING+CK+ R+++A  +  +M   +   P+ VT+ 
Sbjct: 328 MDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKEL-IPNTVTYN 386

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
           T++ GL +VGR+Q+A+ L ++ M   G  P + TY  +L  L +   ++EA  +   + G
Sbjct: 387 TLMHGLCHVGRLQDAIALFHE-MVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEG 445

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
             +  D   Y IVIDG+C + +L+ A+  + ++       +   Y  MI GLCR G + E
Sbjct: 446 SNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDE 505

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           A     E+  +G +P+   YN +  G  +      A Q+L+EM   G + D  T  +L
Sbjct: 506 ANKLFMEMDGNGCSPDGCTYNTITQGLLQNKEALRAIQLLQEMLARGFSADVSTTTLL 563



 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 125/483 (25%), Positives = 239/483 (49%), Gaps = 11/483 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C L+R G A  +   +   G  P+  ++TTLI G C  G++  A  +FD+M   G 
Sbjct: 109 INSFCHLNRPGFAFSVLAKILKLGLQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGF 168

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +TY  L+ G+ +  +   A  L+     R  E+ +   +   + +++DSLC++  V
Sbjct: 169 QPNVVTYGTLINGLCKVGNTNAAIRLL-----RSMEQGNCQPDVVVYTSIIDSLCKDRQV 223

Query: 121 NEVFRIAEDMPQGKSVNEE-FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
            E F +   M  G+ ++ + F    +I SLC        + ++  M    + P +V +++
Sbjct: 224 TEAFNLFSKM-VGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFST 282

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           +V  LCK G    A+ +++  I  G  P+  TY  L++G C +S++++A KV   M+   
Sbjct: 283 VVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNG 342

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                   N  +   C I+   +   +   M Q +  P+ +T NT+++G C +GR+++A+
Sbjct: 343 YAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGLCHVGRLQDAI 402

Query: 300 KVLNDMVA-GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
            + ++MVA G+   PD  T+  ++  L     + EA+ LL + +      P I  Y  V+
Sbjct: 403 ALFHEMVAHGQI--PDLATYRILLDYLCKKSHLDEAMALL-KTIEGSNMDPDIQIYTIVI 459

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
            G+ R   +E A+++F+ +   G+  +  TY I+I+GLC    LDEA + + ++      
Sbjct: 460 DGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCS 519

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI 478
            D   Y  + +GL ++ +   A+  L E++  G + ++    ++++  C   + +   QI
Sbjct: 520 PDGCTYNTITQGLLQNKEALRAIQLLQEMLARGFSADVSTTTLLVEMLCDDKLDQSVKQI 579

Query: 479 LRE 481
           L E
Sbjct: 580 LSE 582


>gi|357125910|ref|XP_003564632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like isoform 1 [Brachypodium distachyon]
 gi|357125912|ref|XP_003564633.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like isoform 2 [Brachypodium distachyon]
          Length = 704

 Score =  212 bits (539), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 142/532 (26%), Positives = 254/532 (47%), Gaps = 44/532 (8%)

Query: 3   QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
            LC    +  A  LF  ++ RG  P+ ++Y+TL+ G+ +   +D A  + DEM    V P
Sbjct: 168 SLCVRGDLDRAVTLFDSLRCRGLAPDRITYSTLMSGFVKNNRLDNALYLLDEMPSYEVQP 227

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           +++ Y+ L+ G  R  + E+A     ++WE++  +   S N A +  ++D LC+ G   E
Sbjct: 228 DAVCYNALLGGCFRNGEFEKA----MRVWEQLVRDPGASPNLATYNVMLDGLCKLGMFKE 283

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
              + E M       +    G MI  LCRS     A+RV   M K GL P +V YNS++ 
Sbjct: 284 AGDVWERMVANNHQPDMITYGTMIHGLCRSTDVDSAARVYSEMIKTGLVPDVVIYNSLLK 343

Query: 183 GLCKHGGCMRA-----------------YQLLEEGIQFGYL------------------P 207
           G C  G    A                 Y ++ +G+  G +                  P
Sbjct: 344 GFCHAGRVGEAWKFWDSMSVSGIRNVTSYNIMLKGLFDGGMVDKATDLWELLEKDDSLSP 403

Query: 208 SEHTYKVLVEGLCGESDLEKARKVLQ-FMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 266
              T+  ++ GLC +    K+ ++L+    S K++D     ++ +  LC      + + +
Sbjct: 404 DMVTFSTMIHGLCEKGFANKSLQILEEARTSGKELDEFSYSSM-ISGLCKDGRLDDAVKL 462

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
              +     +P+    N +INGFC+  +  +A++V + M A   C+P  +T+ T+I GL 
Sbjct: 463 YEKISMDSFKPNSHIYNALINGFCQASKFSDAIRVYSQM-AENDCSPTTITYNTLIHGLC 521

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
              +  EA     +++ ++G    + TY +++RGL R ++++ A  ++N +L  G+  D 
Sbjct: 522 KAEKYLEASRFTREML-EKGCMLDVNTYGSLIRGLCRDKKIDGALALWNQILDKGLQTDV 580

Query: 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV-YAAMIKGLCRSGKIHEAVHFLY 445
             + I+I GLC + ++DEA +   ++   +N   N V Y  ++ G   +G   +A     
Sbjct: 581 VMHNILIHGLCSAGKVDEASQLLSEMKEKNNCCPNVVTYNTLMDGFYETGCFDKAASLWM 640

Query: 446 ELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            ++++G+ P+I+ YN  I G C  +   E  Q+L EM  +G+ P A+TW IL
Sbjct: 641 AILENGLVPDIISYNTRIKGLCSCNRTPEGVQLLNEMLASGIIPTAITWNIL 692



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 123/471 (26%), Positives = 218/471 (46%), Gaps = 47/471 (9%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC L    EA  ++  M +  H P++++Y T+IHG CR+ ++D A +V+ EM   G+
Sbjct: 272 LDGLCKLGMFKEAGDVWERMVANNHQPDMITYGTMIHGLCRSTDVDSAARVYSEMIKTGL 331

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEE--EDLSVNNAAFANLVDSLCREG 118
           +P+ + Y+ L++G      V  A    +K W+ M      +++  N     L D     G
Sbjct: 332 VPDVVIYNSLLKGFCHAGRVGEA----WKFWDSMSVSGIRNVTSYNIMLKGLFDG----G 383

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
            V++   + E + +  S                                  L+P +V+++
Sbjct: 384 MVDKATDLWELLEKDDS----------------------------------LSPDMVTFS 409

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
           +++HGLC+ G   ++ Q+LEE    G    E +Y  ++ GLC +  L+ A K+ + +   
Sbjct: 410 TMIHGLCEKGFANKSLQILEEARTSGKELDEFSYSSMISGLCKDGRLDDAVKLYEKISMD 469

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
                + I N  +   C     ++ + V   M +  C P  IT NT+I+G CK  +  EA
Sbjct: 470 SFKPNSHIYNALINGFCQASKFSDAIRVYSQMAENDCSPTTITYNTLIHGLCKAEKYLEA 529

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
            +   +M+  K C  D  T+ ++I GL    +I  AL L  Q++  +G    +V +N ++
Sbjct: 530 SRFTREMLE-KGCMLDVNTYGSLIRGLCRDKKIDGALALWNQIL-DKGLQTDVVMHNILI 587

Query: 359 RGLFRLRRVEEAKEVFNCMLGIG-VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 417
            GL    +V+EA ++ + M        +  TY  ++DG  E+   D+A   W  I+    
Sbjct: 588 HGLCSAGKVDEASQLLSEMKEKNNCCPNVVTYNTLMDGFYETGCFDKAASLWMAILENGL 647

Query: 418 IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACK 468
           + D   Y   IKGLC   +  E V  L E++ SG+ P  + +N+++    K
Sbjct: 648 VPDIISYNTRIKGLCSCNRTPEGVQLLNEMLASGIIPTAITWNILVRAVIK 698



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/256 (30%), Positives = 138/256 (53%), Gaps = 5/256 (1%)

Query: 248 NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA 307
           NI LR+LC+  +    + +   +      PD IT +T+++GF K  R++ AL +L++M +
Sbjct: 163 NIMLRSLCVRGDLDRAVTLFDSLRCRGLAPDRITYSTLMSGFVKNNRLDNALYLLDEMPS 222

Query: 308 GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRV 367
            +   PDAV +  ++ G    G  ++A+ +  Q++   G SP + TYN +L GL +L   
Sbjct: 223 YEV-QPDAVCYNALLGGCFRNGEFEKAMRVWEQLVRDPGASPNLATYNVMLDGLCKLGMF 281

Query: 368 EEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAM 427
           +EA +V+  M+      D  TY  +I GLC S  +D A R + +++    + D  +Y ++
Sbjct: 282 KEAGDVWERMVANNHQPDMITYGTMIHGLCRSTDVDSAARVYSEMIKTGLVPDVVIYNSL 341

Query: 428 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK-NG 486
           +KG C +G++ EA  F   +  SG+  N+  YN+++ G     M  +A  +   + K + 
Sbjct: 342 LKGFCHAGRVGEAWKFWDSMSVSGIR-NVTSYNIMLKGLFDGGMVDKATDLWELLEKDDS 400

Query: 487 LNPDAVTWRILDKLHG 502
           L+PD VT+  +  +HG
Sbjct: 401 LSPDMVTFSTM--IHG 414



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 109/252 (43%), Gaps = 40/252 (15%)

Query: 275 CQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKF------------------------ 310
           C P V + N +++ F +  R  +A      +  G F                        
Sbjct: 116 CNPGVRSHNALLDAFVRARRFSDADAFFASLSHGAFGRRIAPNLQTYNIMLRSLCVRGDL 175

Query: 311 --------------CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
                          APD +T++T++ G +   R+  AL LL + MP     P  V YNA
Sbjct: 176 DRAVTLFDSLRCRGLAPDRITYSTLMSGFVKNNRLDNALYLLDE-MPSYEVQPDAVCYNA 234

Query: 357 VLRGLFRLRRVEEAKEVFNCML-GIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP 415
           +L G FR    E+A  V+  ++   G   +  TY +++DGLC+     EA   W+ +V  
Sbjct: 235 LLGGCFRNGEFEKAMRVWEQLVRDPGASPNLATYNVMLDGLCKLGMFKEAGDVWERMVAN 294

Query: 416 SNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREA 475
           ++  D   Y  MI GLCRS  +  A     E++ +G+ P++V YN ++ G C      EA
Sbjct: 295 NHQPDMITYGTMIHGLCRSTDVDSAARVYSEMIKTGLVPDVVIYNSLLKGFCHAGRVGEA 354

Query: 476 YQILREMRKNGL 487
           ++    M  +G+
Sbjct: 355 WKFWDSMSVSGI 366



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 81/330 (24%), Positives = 142/330 (43%), Gaps = 42/330 (12%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC      ++ ++  + ++ G   +  SY+++I G C+ G +D A K+++++      PN
Sbjct: 415 LCEKGFANKSLQILEEARTSGKELDEFSYSSMISGLCKDGRLDDAVKLYEKISMDSFKPN 474

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           S  Y+ L+ G  +      A     +++ +M E  D S     +  L+  LC+     E 
Sbjct: 475 SHIYNALINGFCQASKFSDA----IRVYSQMAEN-DCSPTTITYNTLIHGLCKAEKYLEA 529

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            R   +M +   + +    G +I  LCR  +  GA  +   +  +GL   +V +N ++HG
Sbjct: 530 SRFTREMLEKGCMLDVNTYGSLIRGLCRDKKIDGALALWNQILDKGLQTDVVMHNILIHG 589

Query: 184 LCKHGGCMRAYQLLEEGIQFGYL-PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           LC  G    A QLL E  +     P+  TY  L++G       +KA  +   +L      
Sbjct: 590 LCSAGKVDEASQLLSEMKEKNNCCPNVVTYNTLMDGFYETGCFDKAASLWMAILE----- 644

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
                                 N LV        PD+I+ NT I G C   R  E +++L
Sbjct: 645 ----------------------NGLV--------PDIISYNTRIKGLCSCNRTPEGVQLL 674

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQ 332
           N+M+A     P A+T+  ++  ++  G IQ
Sbjct: 675 NEMLASGII-PTAITWNILVRAVIKYGPIQ 703



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 88/197 (44%), Gaps = 42/197 (21%)

Query: 346 GYSPGIVTYNAVLRGLFRLRRVEEAK-------------------EVFNCMLGI------ 380
           G +PG+ ++NA+L    R RR  +A                    + +N ML        
Sbjct: 115 GCNPGVRSHNALLDAFVRARRFSDADAFFASLSHGAFGRRIAPNLQTYNIMLRSLCVRGD 174

Query: 381 --------------GVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAA 426
                         G+  D  TY+ ++ G  ++N+LD A    D++       D   Y A
Sbjct: 175 LDRAVTLFDSLRCRGLAPDRITYSTLMSGFVKNNRLDNALYLLDEMPSYEVQPDAVCYNA 234

Query: 427 MIKGLCRSGKIHEAVHFLYELV-DSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN 485
           ++ G  R+G+  +A+    +LV D G +PN+  YNV++DG CKL M +EA  +   M  N
Sbjct: 235 LLGGCFRNGEFEKAMRVWEQLVRDPGASPNLATYNVMLDGLCKLGMFKEAGDVWERMVAN 294

Query: 486 GLNPDAVTWRILDKLHG 502
              PD +T+  +  +HG
Sbjct: 295 NHQPDMITYGTM--IHG 309


>gi|147817754|emb|CAN66662.1| hypothetical protein VITISV_031722 [Vitis vinifera]
          Length = 1060

 Score =  212 bits (539), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 138/505 (27%), Positives = 242/505 (47%), Gaps = 29/505 (5%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D L    R     K++ DM +RG  PNVV+Y TLI G CR G+   A+++FDEM    +
Sbjct: 165 LDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKI 224

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P  + Y++L+RG+     +  A  +      R      +  N   +  ++D  C+  +V
Sbjct: 225 FPTVVIYTILIRGLCGESRISEAESMF-----RTMRNSGMLPNLYTYNTMMDGYCKIAHV 279

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +   +  +M     +      G +ID LC++     A + +  M   G+ P++  YN +
Sbjct: 280 KKALELYXEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCL 339

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G CK G    A  L  E  +   LP   TY +L++GLCG   +E+A  +LQ M  K  
Sbjct: 340 IDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGF 399

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           +      N  +   C   N  + + V   M +   +P++IT +T+I+G+CK G++E A+ 
Sbjct: 400 LPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMG 459

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +  +MV  K   PD V +T +I G    G  +EA   L++ M + G  P + T + ++ G
Sbjct: 460 LYTEMVI-KGLLPDVVAYTALIDGHFKDGNTKEAFR-LHKEMQEAGLHPNVFTLSCLIDG 517

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L +  R+ +A ++F    G       T            N+LD +      +  P+++  
Sbjct: 518 LCKDGRISDAIKLFLAKTGTDTTGSKT------------NELDRS------LCSPNHV-- 557

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
             +Y A+I+GLC  G+I +A  F  ++  SG+ P++    V+I G  +    R+   +  
Sbjct: 558 --MYTALIQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQGHFRAMHLRDVMMLQA 615

Query: 481 EMRKNGLNPDAVTWRILDKLHGNRG 505
           ++ K G+ P++  +R+L K +   G
Sbjct: 616 DILKMGIIPNSSVYRVLAKGYEESG 640



 Score =  178 bits (451), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 129/520 (24%), Positives = 237/520 (45%), Gaps = 36/520 (6%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LCG SR+ EA  +F  M++ G +PN+ +Y T++ GYC+   +  A +++ EM   G+LPN
Sbjct: 238 LCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYXEMLGDGLLPN 297

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +T+ +L+ G+ +T ++  A   +  +         +  N   +  L+D  C+ G ++E 
Sbjct: 298 VVTFGILIDGLCKTDEMVSARKFLIDM-----ASFGVVPNIFVYNCLIDGYCKAGNLSEA 352

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             +  ++ + + + + F    +I  LC   R   A  ++  M+K+G  P+ V+YN+++ G
Sbjct: 353 LSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDG 412

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK G   +A ++  +  + G  P+  T+  L++G C    +E A  +   M+ K  +  
Sbjct: 413 YCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPD 472

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL- 302
                  +       N  E   +   M +    P+V TL+ +I+G CK GRI +A+K+  
Sbjct: 473 VVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFL 532

Query: 303 ----NDMVAGK-------FCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGI 351
                D    K        C+P+ V +T +I GL   GRI +A +  +  M   G  P +
Sbjct: 533 AKTGTDTTGSKTNELDRSLCSPNHVMYTALIQGLCTDGRIFKA-SKFFSDMRCSGLRPDV 591

Query: 352 VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDD 411
            T   +++G FR   + +   +   +L +G++ +S+ Y ++  G  ES  L  A  F  +
Sbjct: 592 FTCIVIIQGHFRAMHLRDVMMLQADILKMGIIPNSSVYRVLAKGYEESGYLKSALSFCGE 651

Query: 412 IVWPSNIHDNYVYAAMI------------KGLCRSG-----KIHEAVHFLY-ELVDSGVT 453
            V P +  ++  + +              K  C S       IH  V   Y   +    +
Sbjct: 652 GVQPLDRVNSEPWGSYTIRSRFQLCVVTEKKECHSSYLTAFGIHSFVLLWYFHTILKPPS 711

Query: 454 PNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVT 493
           P+ +   V   G        +A Q+ R+M+ +   PD VT
Sbjct: 712 PHEILKKVPFIGQKGDQRPNKALQLFRQMQMDDXQPDIVT 751



 Score =  178 bits (451), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 118/466 (25%), Positives = 223/466 (47%), Gaps = 10/466 (2%)

Query: 35  LIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS---VLVRGVLRTRDVERANVLMFKLW 91
           L H   R  ++    +++  + H  VL  +  Y+    L+R +++     R + +   ++
Sbjct: 56  LFHSVSRRADLAKNPQLYSAIIH--VLTGAKLYAKARCLMRDLIQCLQKSRRSRICCSVF 113

Query: 92  ERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCR 151
             +   E        F  L+ +    G V E   +   M    ++    AC  ++D L +
Sbjct: 114 NVLSRLESSKFTPNVFGVLIIAFSEMGLVEEALWVYYKMDVLPAMQ---ACNMVLDGLVK 170

Query: 152 SGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHT 211
            GR     +V   M  RG +P++V+Y +++ G C+ G  ++A++L +E I+    P+   
Sbjct: 171 KGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVI 230

Query: 212 YKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFML 271
           Y +L+ GLCGES + +A  + + M +   +      N  +   C I +  + L +   ML
Sbjct: 231 YTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYXEML 290

Query: 272 QTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRI 331
                P+V+T   +I+G CK   +  A K L DM A     P+   +  +I G    G +
Sbjct: 291 GDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDM-ASFGVVPNIFVYNCLIDGYCKAGNL 349

Query: 332 QEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAI 391
            EAL+ L+  + +    P + TY+ +++GL  + R+EEA  +   M   G + ++ TY  
Sbjct: 350 SEALS-LHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNT 408

Query: 392 VIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 451
           +IDG C+   +++A      +       +   ++ +I G C++GK+  A+    E+V  G
Sbjct: 409 LIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKG 468

Query: 452 VTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           + P++V Y  +IDG  K    +EA+++ +EM++ GL+P+  T   L
Sbjct: 469 LLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCL 514



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 128/480 (26%), Positives = 224/480 (46%), Gaps = 49/480 (10%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           ++S    PNV  +  LI  +   G ++ A  V+ +M    VLP     ++++ G+++   
Sbjct: 119 LESSKFTPNV--FGVLIIAFSEMGLVEEALWVYYKM---DVLPAMQACNMVLDGLVKKGR 173

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
            +     M+K++  M      S N   +  L+D  CR+G   + FR+ ++M + K     
Sbjct: 174 FDT----MWKVYGDMVAR-GASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTV 228

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
                +I  LC   R   A  +   MR  G+ P+L +YN+++ G CK     +A +L  E
Sbjct: 229 VIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYXE 288

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
            +  G LP+  T+ +L++GLC   ++  ARK L  M S   V                  
Sbjct: 289 MLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVV------------------ 330

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
                            P++   N +I+G+CK G + EAL  L+  +      PD  T++
Sbjct: 331 -----------------PNIFVYNCLIDGYCKAGNLSEALS-LHSEIEKHEILPDVFTYS 372

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
            +I GL  V R++EA  LL Q M ++G+ P  VTYN ++ G  +   +E+A EV + M  
Sbjct: 373 ILIKGLCGVDRMEEADGLL-QEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTE 431

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
            G+  +  T++ +IDG C++ +++ A   + ++V    + D   Y A+I G  + G   E
Sbjct: 432 KGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKE 491

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
           A     E+ ++G+ PN+   + +IDG CK     +A ++   + K G +        LD+
Sbjct: 492 AFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLF--LAKTGTDTTGSKTNELDR 549



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 94/346 (27%), Positives = 170/346 (49%), Gaps = 2/346 (0%)

Query: 161 VVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLC 220
            ++V  K  + P++ + N ++ GL K G     +++  + +  G  P+  TY  L++G C
Sbjct: 145 ALWVYYKMDVLPAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCC 204

Query: 221 GESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVI 280
            + D  KA ++   M+ KK      I  I +R LC     +E  ++   M  +   P++ 
Sbjct: 205 RQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLY 264

Query: 281 TLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQ 340
           T NT+++G+CK+  +++AL++  +M+ G    P+ VTF  +I GL     +  A   L  
Sbjct: 265 TYNTMMDGYCKIAHVKKALELYXEML-GDGLLPNVVTFGILIDGLCKTDEMVSARKFLID 323

Query: 341 VMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN 400
            M   G  P I  YN ++ G  +   + EA  + + +    ++ D  TY+I+I GLC  +
Sbjct: 324 -MASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVD 382

Query: 401 QLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYN 460
           +++EA     ++     + +   Y  +I G C+ G + +A+    ++ + G+ PNI+ ++
Sbjct: 383 RMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFS 442

Query: 461 VVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
            +IDG CK      A  +  EM   GL PD V +  L   H   GN
Sbjct: 443 TLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGN 488



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 125/598 (20%), Positives = 231/598 (38%), Gaps = 139/598 (23%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LCG+ R+ EA  L  +MK +G +PN V+Y TLI GYC+ G M+ A +V  +M   G+ PN
Sbjct: 378 LCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPN 437

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +T+S L+ G  +   +E A  L  ++  +      L  +  A+  L+D   ++G   E 
Sbjct: 438 IITFSTLIDGYCKAGKMEAAMGLYTEMVIK-----GLLPDVVAYTALIDGHFKDGNTKEA 492

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYV-------------MRKRGL 170
           FR+ ++M +       F    +ID LC+ GR   A ++                + +   
Sbjct: 493 FRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTDTTGSKTNELDRSLC 552

Query: 171 TPSLVSYNSIVHGLCKHGGCMRAYQLLEEG------------------------------ 200
           +P+ V Y +++ GLC  G   +A +   +                               
Sbjct: 553 SPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQGHFRAMHLRDVMM 612

Query: 201 -----IQFGYLPSEHTYKVLVEG------------LCGE--------------SDLEKAR 229
                ++ G +P+   Y+VL +G             CGE              S   ++R
Sbjct: 613 LQADILKMGIIPNSSVYRVLAKGYEESGYLKSALSFCGEGVQPLDRVNSEPWGSYTIRSR 672

Query: 230 KVLQFMLSKKDVDRTRICNIYLRALCLI---------KNPTELLNVLVFMLQTQCQPDVI 280
             L  +  KK+   + +    + +  L+          +P E+L  + F+ Q   Q    
Sbjct: 673 FQLCVVTEKKECHSSYLTAFGIHSFVLLWYFHTILKPPSPHEILKKVPFIGQKGDQ---- 728

Query: 281 TLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQ 340
                        R  +AL++   M       PD VT T  +    ++G +      ++ 
Sbjct: 729 -------------RPNKALQLFRQMQMDDX-QPDIVTVTVALSACADLGALDMG-EWIHA 773

Query: 341 VMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN 400
            +  RG    +   N+++    +   +  A+ +F+         D TT+  +I G     
Sbjct: 774 YIRHRGLDTDLCLNNSLINMYSKCGEIGTARRLFDGTQK----KDVTTWTSMIVGHALHG 829

Query: 401 QLDEAKRFWDD--------------------IVWPSNIHDNYVYAAMIKGLCRSGKIHEA 440
           Q +EA + + +                    +V P+++     +  ++     +G + E 
Sbjct: 830 QAEEALQLFTEMKETNKRARKNKRNGEXESSLVLPNDV----TFMGVLMACSHAGLVEEG 885

Query: 441 -VHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
             HF     D  + P I  +  ++D  C+  +  EAY+ + +M    + P+AV WR L
Sbjct: 886 KQHFRSMKEDYSLRPRISHFGCMVDLLCRAGLLTEAYEFILKM---PVRPNAVVWRTL 940


>gi|255538538|ref|XP_002510334.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223551035|gb|EEF52521.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 947

 Score =  212 bits (539), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 152/566 (26%), Positives = 258/566 (45%), Gaps = 82/566 (14%)

Query: 5   CGLSRVGEAHKLFFDM-KSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           C   ++ EA K+  +M +S G V +  +Y  LI GYCR  +MD A ++ DEM + G+  N
Sbjct: 299 CRQCKLEEAEKVLREMERSEGMVLDEYAYGVLIDGYCRVCKMDDAVRLRDEMLNVGLRMN 358

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKL--WERMKEEEDLSVNNAAFANLVDSLCREGYVN 121
               + L+ G  +   V  A  L+ ++  W       DL   + +++ L+D  CREG V 
Sbjct: 359 LFICNALINGYCKNGQVSEAERLLMRMVDW-------DLEPESYSYSTLMDGFCREGLVT 411

Query: 122 EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY---- 177
           +   +  +M +    +       ++  LCR G    A  V ++M KRG+TP  VSY    
Sbjct: 412 KAISVYNEMLRVGIQSNVVTHNSLLKGLCRVGAFEDALHVWHLMLKRGVTPDEVSYCTLL 471

Query: 178 -------------------------------NSIVHGLCKHGGCMRAYQLLEEGIQFGYL 206
                                          N++++G CK    + A +      + G+ 
Sbjct: 472 DLLFKMGEFFRALALWNDILARGYGRSTYAFNTMINGFCKMEKMIEAEETFNRMKELGFE 531

Query: 207 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 266
           P   TY+ L++G C   ++E+A KV + M  +  +    + N  +  L   K   E++++
Sbjct: 532 PDGVTYRTLIDGYCKLGNVEEAFKVKEKMEKEAILPSIELYNSLIGGLFKSKKTREVMDL 591

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
           L  M      P+V+T  T+I G+C  GR+++A     DM+   F AP+ +  + I+  L 
Sbjct: 592 LSEMCLKGLSPNVVTYGTLIAGWCDEGRLDKAFTAYFDMIEKGF-APNVIICSKIVSSLY 650

Query: 327 NVGRIQEALNLLYQVM----------------------------------PQRGYS-PGI 351
            +GRI EA N+L Q M                                    + +S P  
Sbjct: 651 RLGRIDEA-NMLLQKMVNLDVFLDHGYFDRLHKADDGNLDSQKIADTLDESSKSFSLPNS 709

Query: 352 VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDD 411
           V YN  + GL +  +V++AK++F+ +L  G   D+ TY  +I G   +  +++A    D+
Sbjct: 710 VVYNIAIAGLCKSGKVDDAKKIFSSLLLRGFSPDNFTYCTLIHGYSAAGNVNDAFSLRDE 769

Query: 412 IVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSM 471
           ++      +   Y A+I GLC+SG +  A     +L   G+ PN++ YN++IDG CK   
Sbjct: 770 MLKRGLAPNIITYNALINGLCKSGNLDRAQKLFDKLHLKGLAPNVISYNILIDGYCKNGN 829

Query: 472 KREAYQILREMRKNGLNPDAVTWRIL 497
            REA  +  +M K G++P  +T+  L
Sbjct: 830 TREALDLRNKMLKEGISPSLITYSAL 855



 Score =  171 bits (433), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 129/524 (24%), Positives = 232/524 (44%), Gaps = 78/524 (14%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP-- 62
           C    +  A  +F +M   G VP++ S   L+    R GE   A  V+D +   G++P  
Sbjct: 159 CEKGMIKNALHVFDNMGKLGCVPSLRSCNRLLSSLVRKGESSNAILVYDHINRLGIVPDV 218

Query: 63  ---------------------------------NSLTYSVLVRGVLRTRDVERANVLMFK 89
                                            N +TY+ L+ G +   D+ERA +++  
Sbjct: 219 FTCSIMVNAYCKDGWVNVAVDFVKEMDYLGFELNVVTYNSLIDGCVSIGDMERAEMVL-- 276

Query: 90  LWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKS-VNEEFACGHMIDS 148
              ++  E  +  N      L+   CR+  + E  ++  +M + +  V +E+A G +ID 
Sbjct: 277 ---KLMGERGILRNKVTLTLLIKGYCRQCKLEEAEKVLREMERSEGMVLDEYAYGVLIDG 333

Query: 149 LCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPS 208
            CR  +   A R+   M   GL  +L   N++++G CK+G    A +LL   + +   P 
Sbjct: 334 YCRVCKMDDAVRLRDEMLNVGLRMNLFICNALINGYCKNGQVSEAERLLMRMVDWDLEPE 393

Query: 209 EHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLV 268
            ++Y  L++G C E  + KA                                   ++V  
Sbjct: 394 SYSYSTLMDGFCREGLVTKA-----------------------------------ISVYN 418

Query: 269 FMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNV 328
            ML+   Q +V+T N+++ G C++G  E+AL V + M+  +   PD V++ T++  L  +
Sbjct: 419 EMLRVGIQSNVVTHNSLLKGLCRVGAFEDALHVWHLMLK-RGVTPDEVSYCTLLDLLFKM 477

Query: 329 GRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTT 388
           G    AL L   ++  RGY      +N ++ G  ++ ++ EA+E FN M  +G   D  T
Sbjct: 478 GEFFRALALWNDILA-RGYGRSTYAFNTMINGFCKMEKMIEAEETFNRMKELGFEPDGVT 536

Query: 389 YAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELV 448
           Y  +IDG C+   ++EA +  + +   + +    +Y ++I GL +S K  E +  L E+ 
Sbjct: 537 YRTLIDGYCKLGNVEEAFKVKEKMEKEAILPSIELYNSLIGGLFKSKKTREVMDLLSEMC 596

Query: 449 DSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAV 492
             G++PN+V Y  +I G C      +A+    +M + G  P+ +
Sbjct: 597 LKGLSPNVVTYGTLIAGWCDEGRLDKAFTAYFDMIEKGFAPNVI 640



 Score =  161 bits (408), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 132/495 (26%), Positives = 237/495 (47%), Gaps = 29/495 (5%)

Query: 17  FFDMKSR--GHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV--R 72
           FF + S+     PNV S+  L+H   R    D      +E+    V P+   YS LV   
Sbjct: 80  FFKLASKQSNFRPNVNSHCKLVHILSRARMYDETRSYLNEL----VTPSKNNYSSLVVWN 135

Query: 73  GVLRTRDVERANVLMFKLWERMKEEEDLSVNNA--AFAN---------------LVDSLC 115
            ++R  +  + +  +F +  ++  E+ + + NA   F N               L+ SL 
Sbjct: 136 ELVRVFEDFKFSPTVFDMILKIYCEKGM-IKNALHVFDNMGKLGCVPSLRSCNRLLSSLV 194

Query: 116 REGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLV 175
           R+G  +    + + + +   V + F C  M+++ C+ G  + A   V  M   G   ++V
Sbjct: 195 RKGESSNAILVYDHINRLGIVPDVFTCSIMVNAYCKDGWVNVAVDFVKEMDYLGFELNVV 254

Query: 176 SYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM 235
           +YNS++ G    G   RA  +L+   + G L ++ T  +L++G C +  LE+A KVL+ M
Sbjct: 255 TYNSLIDGCVSIGDMERAEMVLKLMGERGILRNKVTLTLLIKGYCRQCKLEEAEKVLREM 314

Query: 236 -LSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGR 294
             S+  V       + +   C +    + + +   ML    + ++   N +ING+CK G+
Sbjct: 315 ERSEGMVLDEYAYGVLIDGYCRVCKMDDAVRLRDEMLNVGLRMNLFICNALINGYCKNGQ 374

Query: 295 IEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTY 354
           + EA ++L  MV      P++ +++T++ G    G + +A+++ Y  M + G    +VT+
Sbjct: 375 VSEAERLLMRMVDWDL-EPESYSYSTLMDGFCREGLVTKAISV-YNEMLRVGIQSNVVTH 432

Query: 355 NAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVW 414
           N++L+GL R+   E+A  V++ ML  GV  D  +Y  ++D L +  +   A   W+DI+ 
Sbjct: 433 NSLLKGLCRVGAFEDALHVWHLMLKRGVTPDEVSYCTLLDLLFKMGEFFRALALWNDILA 492

Query: 415 PSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKRE 474
                  Y +  MI G C+  K+ EA      + + G  P+ V Y  +IDG CKL    E
Sbjct: 493 RGYGRSTYAFNTMINGFCKMEKMIEAEETFNRMKELGFEPDGVTYRTLIDGYCKLGNVEE 552

Query: 475 AYQILREMRKNGLNP 489
           A+++  +M K  + P
Sbjct: 553 AFKVKEKMEKEAILP 567



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 130/507 (25%), Positives = 227/507 (44%), Gaps = 50/507 (9%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           MD  C    V +A  ++ +M   G   NVV++ +L+ G CR G  + A  V+  M   GV
Sbjct: 401 MDGFCREGLVTKAISVYNEMLRVGIQSNVVTHNSLLKGLCRVGAFEDALHVWHLMLKRGV 460

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ ++Y  L+  + +  +  RA  L   +  R         +  AF  +++  C+   +
Sbjct: 461 TPDEVSYCTLLDLLFKMGEFFRALALWNDILAR-----GYGRSTYAFNTMINGFCKMEKM 515

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E       M +     +      +ID  C+ G    A +V   M K  + PS+  YNS+
Sbjct: 516 IEAEETFNRMKELGFEPDGVTYRTLIDGYCKLGNVEEAFKVKEKMEKEAILPSIELYNSL 575

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GL K         LL E    G  P+  TY  L+ G C E  L+KA      M+ K  
Sbjct: 576 IGGLFKSKKTREVMDLLSEMCLKGLSPNVVTYGTLIAGWCDEGRLDKAFTAYFDMIEKGF 635

Query: 241 VDRTRICNIYLRALCLIKNPTE-------LLNVLVFM---------------LQTQ---- 274
                IC+  + +L  +    E       ++N+ VF+               L +Q    
Sbjct: 636 APNVIICSKIVSSLYRLGRIDEANMLLQKMVNLDVFLDHGYFDRLHKADDGNLDSQKIAD 695

Query: 275 ---------CQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 325
                      P+ +  N  I G CK G++++A K+ + ++   F +PD  T+ T+I G 
Sbjct: 696 TLDESSKSFSLPNSVVYNIAIAGLCKSGKVDDAKKIFSSLLLRGF-SPDNFTYCTLIHGY 754

Query: 326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 385
              G + +A +L  + M +RG +P I+TYNA++ GL +   ++ A+++F+ +   G+  +
Sbjct: 755 SAAGNVNDAFSLRDE-MLKRGLAPNIITYNALINGLCKSGNLDRAQKLFDKLHLKGLAPN 813

Query: 386 STTYAIVIDGLCESNQLDEA----KRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAV 441
             +Y I+IDG C++    EA     +   + + PS I     Y+A+I G C+ G + +A 
Sbjct: 814 VISYNILIDGYCKNGNTREALDLRNKMLKEGISPSLI----TYSALIYGFCKQGDMGKAT 869

Query: 442 HFLYELVDSGVTPNIVCYNVVIDGACK 468
           + L E+ +     NI  +  +++G  K
Sbjct: 870 NLLDEMRELFADQNIAKFVKLVEGHVK 896



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 88/371 (23%), Positives = 163/371 (43%), Gaps = 69/371 (18%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           +  E   L  +M  +G  PNVV+Y TLI G+C  G +D A+  + +M   G  PN +  S
Sbjct: 584 KTREVMDLLSEMCLKGLSPNVVTYGTLIAGWCDEGRLDKAFTAYFDMIEKGFAPNVIICS 643

Query: 69  VLVRGVLRTRDVERANVLMFKL-----------WERMKEEEDLSVNNAAFANLVDS---- 113
            +V  + R   ++ AN+L+ K+           ++R+ + +D ++++   A+ +D     
Sbjct: 644 KIVSSLYRLGRIDEANMLLQKMVNLDVFLDHGYFDRLHKADDGNLDSQKIADTLDESSKS 703

Query: 114 ---------------LCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGA 158
                          LC+ G V++  +I   +       + F    +I     +G  + A
Sbjct: 704 FSLPNSVVYNIAIAGLCKSGKVDDAKKIFSSLLLRGFSPDNFTYCTLIHGYSAAGNVNDA 763

Query: 159 SRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEG 218
             +   M KRGL P++++YN++++GLCK G   RA +L ++    G  P+  +Y +L++G
Sbjct: 764 FSLRDEMLKRGLAPNIITYNALINGLCKSGNLDRAQKLFDKLHLKGLAPNVISYNILIDG 823

Query: 219 LCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPD 278
            C                                      N  E L++   ML+    P 
Sbjct: 824 YCKNG-----------------------------------NTREALDLRNKMLKEGISPS 848

Query: 279 VITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG---RIQEAL 335
           +IT + +I GFCK G + +A  +L++M    F   +   F  ++ G +  G   +I +  
Sbjct: 849 LITYSALIYGFCKQGDMGKATNLLDEM-RELFADQNIAKFVKLVEGHVKCGEVKKIAKLH 907

Query: 336 NLLYQVMPQRG 346
           N+++  +P  G
Sbjct: 908 NMMHITIPCAG 918



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 83/362 (22%), Positives = 165/362 (45%), Gaps = 52/362 (14%)

Query: 170 LTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKAR 229
           +TPS  +Y+S+V         +R ++       F + P+   + ++++  C +  ++ A 
Sbjct: 121 VTPSKNNYSSLV----VWNELVRVFE------DFKFSPT--VFDMILKIYCEKGMIKNAL 168

Query: 230 KVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGF 289
            V   M     V   R CN  L +L      +  + V   + +    PDV T + ++N +
Sbjct: 169 HVFDNMGKLGCVPSLRSCNRLLSSLVRKGESSNAILVYDHINRLGIVPDVFTCSIMVNAY 228

Query: 290 CKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSP 349
           CK G +  A+  + +M    F   + VT+ ++I G +++G ++ A  ++ ++M +RG   
Sbjct: 229 CKDGWVNVAVDFVKEMDYLGF-ELNVVTYNSLIDGCVSIGDMERA-EMVLKLMGERGILR 286

Query: 350 GIVTYNAVLRGLFRLRRVEEAKEVFNCM-LGIGVVADSTTYAIVIDGLCESNQLDEAKRF 408
             VT   +++G  R  ++EEA++V   M    G+V D   Y ++IDG C   ++D+A R 
Sbjct: 287 NKVTLTLLIKGYCRQCKLEEAEKVLREMERSEGMVLDEYAYGVLIDGYCRVCKMDDAVRL 346

Query: 409 WDDIV------------------------------------WPSNIHDNYVYAAMIKGLC 432
            D+++                                    W     ++Y Y+ ++ G C
Sbjct: 347 RDEMLNVGLRMNLFICNALINGYCKNGQVSEAERLLMRMVDWDLE-PESYSYSTLMDGFC 405

Query: 433 RSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAV 492
           R G + +A+    E++  G+  N+V +N ++ G C++    +A  +   M K G+ PD V
Sbjct: 406 REGLVTKAISVYNEMLRVGIQSNVVTHNSLLKGLCRVGAFEDALHVWHLMLKRGVTPDEV 465

Query: 493 TW 494
           ++
Sbjct: 466 SY 467



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 66/126 (52%), Gaps = 5/126 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC    +  A KLF  +  +G  PNV+SY  LI GYC+ G    A  + ++M   G+
Sbjct: 786 INGLCKSGNLDRAQKLFDKLHLKGLAPNVISYNILIDGYCKNGNTREALDLRNKMLKEGI 845

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TYS L+ G  +  D+ +A  L+ ++ E   ++     N A F  LV+   + G V
Sbjct: 846 SPSLITYSALIYGFCKQGDMGKATNLLDEMRELFADQ-----NIAKFVKLVEGHVKCGEV 900

Query: 121 NEVFRI 126
            ++ ++
Sbjct: 901 KKIAKL 906


>gi|147833323|emb|CAN61988.1| hypothetical protein VITISV_026694 [Vitis vinifera]
          Length = 553

 Score =  212 bits (539), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 124/476 (26%), Positives = 242/476 (50%), Gaps = 10/476 (2%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           +  K    M  RG +P+++  T+LI G+CR G+   A  V + +   G +P+ +TY+VL+
Sbjct: 75  DGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDVITYNVLI 134

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP 131
            G  ++ +++ A     ++ +RM    D+      +  ++ +LC  G + +   + +   
Sbjct: 135 SGYCKSGEIDNA----LQVLDRMNVAPDV----VTYNTILRTLCDSGKLKQAMEVLDRQL 186

Query: 132 QGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCM 191
           Q +   +      +I++ C+      A +++  MR +G  P +V+YN +++G+CK G   
Sbjct: 187 QKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLD 246

Query: 192 RAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYL 251
            A + L     +G  P+  T+ +++  +C       A K+L  ML K         NI +
Sbjct: 247 EAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILI 306

Query: 252 RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC 311
             LC        +++L  M    C P+ ++ N +++GFCK  +++ A++ L+ MV+ + C
Sbjct: 307 NFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVS-RGC 365

Query: 312 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK 371
            PD VT+ T++  L   G++  A+ +L Q +  +G SP ++TYN V+ GL ++ + E A 
Sbjct: 366 YPDIVTYNTLLTALCKDGKVDVAVEILNQ-LSSKGCSPVLITYNTVIDGLSKVGKTERAI 424

Query: 372 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 431
           ++ + M   G+  D  TY+ ++ GL    ++DEA +F+ D+       +   Y +++ GL
Sbjct: 425 KLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGL 484

Query: 432 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
           C+S +   A+ FL  ++     P    Y ++I+G     + +EA  +L E+   GL
Sbjct: 485 CKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNELCSRGL 540



 Score =  211 bits (538), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 129/450 (28%), Positives = 240/450 (53%), Gaps = 13/450 (2%)

Query: 6   GLSRVGEAHKLFFDMK---SRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           G  R+G+  K  + M+     G VP+V++Y  LI GYC++GE+D A +V D M    V P
Sbjct: 101 GFCRIGKTKKATWVMEILEQSGAVPDVITYNVLISGYCKSGEIDNALQVLDRM---NVAP 157

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           + +TY+ ++R +  +  +++A     ++ +R  ++E    +   +  L+++ C+E  V +
Sbjct: 158 DVVTYNTILRTLCDSGKLKQA----MEVLDRQLQKE-CYPDVITYTILIEATCKESGVGQ 212

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
             ++ ++M    S  +      +I+ +C+ GR   A + +  M   G  P+++++N I+ 
Sbjct: 213 AMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILR 272

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
            +C  G  M A +LL + ++ G  PS  T+ +L+  LC +  L +A  +L+ M       
Sbjct: 273 SMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTP 332

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
            +   N  L   C  K     +  L  M+   C PD++T NT++   CK G+++ A+++L
Sbjct: 333 NSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEIL 392

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
           N + + K C+P  +T+ T+I GL  VG+ + A+ LL + M ++G  P I+TY++++ GL 
Sbjct: 393 NQL-SSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDE-MRRKGLKPDIITYSSLVSGLS 450

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
           R  +V+EA + F+ + G+G+  ++ TY  ++ GLC+S Q D A  F   ++         
Sbjct: 451 REGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEA 510

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGV 452
            Y  +I+G+   G   EA+  L EL   G+
Sbjct: 511 TYTILIEGIAYEGLAKEALDLLNELCSRGL 540



 Score =  199 bits (505), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 117/389 (30%), Positives = 195/389 (50%), Gaps = 5/389 (1%)

Query: 109 NLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKR 168
           N +  L R G + + F+  E M     + +   C  +I   CR G+   A+ V+ ++ + 
Sbjct: 62  NHLRRLVRNGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQS 121

Query: 169 GLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKA 228
           G  P +++YN ++ G CK G    A Q+L+   +    P   TY  ++  LC    L++A
Sbjct: 122 GAVPDVITYNVLISGYCKSGEIDNALQVLD---RMNVAPDVVTYNTILRTLCDSGKLKQA 178

Query: 229 RKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVING 288
            +VL   L K+         I + A C      + + +L  M     +PDV+T N +ING
Sbjct: 179 MEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLING 238

Query: 289 FCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYS 348
            CK GR++EA+K LN+M     C P+ +T   I+  + + GR  +A  LL  ++ ++G S
Sbjct: 239 ICKEGRLDEAIKFLNNM-PSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDML-RKGCS 296

Query: 349 PGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRF 408
           P +VT+N ++  L R   +  A ++   M   G   +S +Y  ++ G C+  ++D A  +
Sbjct: 297 PSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEY 356

Query: 409 WDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACK 468
            D +V      D   Y  ++  LC+ GK+  AV  L +L   G +P ++ YN VIDG  K
Sbjct: 357 LDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSK 416

Query: 469 LSMKREAYQILREMRKNGLNPDAVTWRIL 497
           +     A ++L EMR+ GL PD +T+  L
Sbjct: 417 VGKTERAIKLLDEMRRKGLKPDIITYSSL 445



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 98/393 (24%), Positives = 182/393 (46%), Gaps = 42/393 (10%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C  S VG+A KL  +M+++G  P+VV+Y  LI+G C+ G +D A K  + M   G 
Sbjct: 201 IEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGC 260

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +T+++++R +  T     A  L+  +  +       S +   F  L++ LCR+G +
Sbjct: 261 QPNVITHNIILRSMCSTGRWMDAEKLLSDMLRK-----GCSPSVVTFNILINFLCRQGLL 315

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                I E MP         +   ++   C+  +   A   + +M  RG  P +V+YN++
Sbjct: 316 GRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTL 375

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +  LCK G    A ++L +    G  P   TY  +++GL      E+A K+L  M  K  
Sbjct: 376 LTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKG- 434

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                              +PD+IT +++++G  + G+++EA+K
Sbjct: 435 ----------------------------------LKPDIITYSSLVSGLSREGKVDEAIK 460

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
             +D+  G    P+A+T+ +I+ GL    +   A++ L  ++ +R   P   TY  ++ G
Sbjct: 461 FFHDL-EGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKR-CKPTEATYTILIEG 518

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVI 393
           +      +EA ++ N +   G+V  S+   + +
Sbjct: 519 IAYEGLAKEALDLLNELCSRGLVKKSSAEQVAV 551



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 79/279 (28%), Positives = 154/279 (55%), Gaps = 7/279 (2%)

Query: 224 DLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLN 283
           +LE   K L+ M+ + D+     C   +R  C I    +   V+  + Q+   PDVIT N
Sbjct: 72  ELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDVITYN 131

Query: 284 TVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMP 343
            +I+G+CK G I+ AL+VL+ M      APD VT+ TI+  L + G++++A+ +L + + 
Sbjct: 132 VLISGYCKSGEIDNALQVLDRMNV----APDVVTYNTILRTLCDSGKLKQAMEVLDRQLQ 187

Query: 344 QRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLD 403
           +  Y P ++TY  ++    +   V +A ++ + M   G   D  TY ++I+G+C+  +LD
Sbjct: 188 KECY-PDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLD 246

Query: 404 EAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463
           EA +F +++       +   +  +++ +C +G+  +A   L +++  G +P++V +N++I
Sbjct: 247 EAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILI 306

Query: 464 DGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
           +  C+  +   A  IL +M  +G  P+++++  L  LHG
Sbjct: 307 NFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPL--LHG 343


>gi|224125496|ref|XP_002319601.1| predicted protein [Populus trichocarpa]
 gi|222857977|gb|EEE95524.1| predicted protein [Populus trichocarpa]
          Length = 460

 Score =  211 bits (538), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 138/480 (28%), Positives = 229/480 (47%), Gaps = 42/480 (8%)

Query: 24  GHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERA 83
           G  P +V++ TL+ G C   ++  A K+FDEM   G  P+ +TYS ++ G+ +  +   A
Sbjct: 5   GLQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGNTTMA 64

Query: 84  NVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACG 143
             L+ K+     EE+    N  A+  ++DSLC++  V E      +M +     + F   
Sbjct: 65  LQLLKKM-----EEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYS 119

Query: 144 HMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQF 203
            ++   C  GR + A+ +   M +R + P+ V++  ++ GLCK      A+ + E   + 
Sbjct: 120 SILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEK 179

Query: 204 GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTEL 263
           G  P  +TY  LV+G C  S +++A+K+   M      DR                    
Sbjct: 180 GLEPDVYTYNALVDGYCSRSQMDEAQKLFNIM------DRK------------------- 214

Query: 264 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF 323
                      C P+V + N +ING CK GRI+EA  +L +M + K   PD  T++T++ 
Sbjct: 215 ----------GCAPNVRSYNILINGHCKSGRIDEAKGLLAEM-SHKSLTPDIFTYSTLMR 263

Query: 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 383
           G   VGR QEA  LL + M   G  P ++TY+ VL GL +   ++EA E+   M    + 
Sbjct: 264 GFCQVGRPQEAQELLKE-MCSYGLLPNLITYSIVLDGLCKHGHLDEAFELLKAMQESKIE 322

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
            +   Y I+I+G+C   +L+ A+  + ++           Y  MI GL + G  +EA   
Sbjct: 323 PNIFIYTILIEGMCTFGKLEAARELFSNLFVKGIQPTVVTYTVMISGLLKGGLSNEACEL 382

Query: 444 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGN 503
             E+  +G  PN   YNV+I G  +      A +++ EM   G + D+ T+R+L  L  +
Sbjct: 383 FREMAVNGCLPNSCTYNVIIQGFLRNGDTPNAVRLIEEMVGKGFSADSSTFRMLSDLESS 442



 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 107/333 (32%), Positives = 189/333 (56%), Gaps = 2/333 (0%)

Query: 165 MRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESD 224
           M K GL P+LV++N+++ GLC     M A +L +E ++ G+ P   TY  ++ GLC   +
Sbjct: 1   MFKLGLQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGN 60

Query: 225 LEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNT 284
              A ++L+ M  K         N  + +LC  +  TE ++    M++    PDV T ++
Sbjct: 61  TTMALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSS 120

Query: 285 VINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ 344
           +++GFC +GR+ EA  +   MV  +   P+ VTFT +I GL     I EA  L+++ M +
Sbjct: 121 ILHGFCNLGRVNEATSLFKQMVE-RNVIPNKVTFTILIDGLCKKRMISEAW-LVFETMTE 178

Query: 345 RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 404
           +G  P + TYNA++ G     +++EA+++FN M   G   +  +Y I+I+G C+S ++DE
Sbjct: 179 KGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDE 238

Query: 405 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
           AK    ++   S   D + Y+ +++G C+ G+  EA   L E+   G+ PN++ Y++V+D
Sbjct: 239 AKGLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGLLPNLITYSIVLD 298

Query: 465 GACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           G CK     EA+++L+ M+++ + P+   + IL
Sbjct: 299 GLCKHGHLDEAFELLKAMQESKIEPNIFIYTIL 331



 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 115/461 (24%), Positives = 214/461 (46%), Gaps = 42/461 (9%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC  +++ +A KLF +M   GH P+V++Y+T+I+G C+ G   +A ++  +M   G  PN
Sbjct: 20  LCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGNTTMALQLLKKMEEKGCKPN 79

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            + Y+                                         ++DSLC++  V E 
Sbjct: 80  VVAYNT----------------------------------------IIDSLCKDRLVTEA 99

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
                +M +     + F    ++   C  GR + A+ +   M +R + P+ V++  ++ G
Sbjct: 100 MDFFSEMVKEGIPPDVFTYSSILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDG 159

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LCK      A+ + E   + G  P  +TY  LV+G C  S +++A+K+   M  K     
Sbjct: 160 LCKKRMISEAWLVFETMTEKGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPN 219

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
            R  NI +   C      E   +L  M      PD+ T +T++ GFC++GR +EA ++L 
Sbjct: 220 VRSYNILINGHCKSGRIDEAKGLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLK 279

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           +M +     P+ +T++ ++ GL   G + EA  LL + M +    P I  Y  ++ G+  
Sbjct: 280 EMCSYGL-LPNLITYSIVLDGLCKHGHLDEAFELL-KAMQESKIEPNIFIYTILIEGMCT 337

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
             ++E A+E+F+ +   G+     TY ++I GL +    +EA   + ++     + ++  
Sbjct: 338 FGKLEAARELFSNLFVKGIQPTVVTYTVMISGLLKGGLSNEACELFREMAVNGCLPNSCT 397

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
           Y  +I+G  R+G    AV  + E+V  G + +   + ++ D
Sbjct: 398 YNVIIQGFLRNGDTPNAVRLIEEMVGKGFSADSSTFRMLSD 438



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 106/394 (26%), Positives = 190/394 (48%), Gaps = 42/394 (10%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    V EA   F +M   G  P+V +Y++++HG+C  G ++ A  +F +M    V
Sbjct: 87  IDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSILHGFCNLGRVNEATSLFKQMVERNV 146

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +PN +T+++L+ G+ + R +  A  L+F+       E D+   NA    LVD  C    +
Sbjct: 147 IPNKVTFTILIDGLCKKRMISEA-WLVFETMTEKGLEPDVYTYNA----LVDGYCSRSQM 201

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E  ++   M +        +   +I+  C+SGR   A  ++  M  + LTP + +Y+++
Sbjct: 202 DEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAKGLLAEMSHKSLTPDIFTYSTL 261

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G C+ G    A +LL+E   +G LP+  TY ++++GLC    L++A ++L+       
Sbjct: 262 MRGFCQVGRPQEAQELLKEMCSYGLLPNLITYSIVLDGLCKHGHLDEAFELLK------- 314

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                        M +++ +P++     +I G C  G++E A +
Sbjct: 315 ----------------------------AMQESKIEPNIFIYTILIEGMCTFGKLEAARE 346

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           + +++   K   P  VT+T +I GLL  G   EA   L++ M   G  P   TYN +++G
Sbjct: 347 LFSNLFV-KGIQPTVVTYTVMISGLLKGGLSNEACE-LFREMAVNGCLPNSCTYNVIIQG 404

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVID 394
             R      A  +   M+G G  ADS+T+ ++ D
Sbjct: 405 FLRNGDTPNAVRLIEEMVGKGFSADSSTFRMLSD 438



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 73/236 (30%), Positives = 126/236 (53%), Gaps = 2/236 (0%)

Query: 270 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG 329
           M +   QP ++T NT+++G C   +I +A+K+ ++MV      PD +T++TII GL  +G
Sbjct: 1   MFKLGLQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGH-EPDVITYSTIINGLCKMG 59

Query: 330 RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTY 389
               AL LL + M ++G  P +V YN ++  L + R V EA + F+ M+  G+  D  TY
Sbjct: 60  NTTMALQLLKK-MEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTY 118

Query: 390 AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449
           + ++ G C   +++EA   +  +V  + I +   +  +I GLC+   I EA      + +
Sbjct: 119 SSILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTE 178

Query: 450 SGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
            G+ P++  YN ++DG C  S   EA ++   M + G  P+  ++ IL   H   G
Sbjct: 179 KGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSG 234


>gi|9502386|gb|AAF88093.1|AC025417_21 T12C24.22 [Arabidopsis thaliana]
          Length = 1245

 Score =  211 bits (538), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 133/483 (27%), Positives = 247/483 (51%), Gaps = 42/483 (8%)

Query: 24  GHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERA 83
           G   N+ +   +I+ +CR  +   AY V  ++   G  P++ T++ L++G+     V  A
Sbjct: 108 GIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEA 167

Query: 84  NVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACG 143
            VL+ ++ E   + + ++ N+     +V+ +CR G  +    +   M +     + F   
Sbjct: 168 VVLVDRMVENGCQPDVVTYNS-----IVNGICRSGDTSLALDLLRKMEERNVKADVFTYS 222

Query: 144 HMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQF 203
            +IDSLCR G    A  +   M  +G+  S+V+YNS+V GLCK G       LL++ +  
Sbjct: 223 TIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSR 282

Query: 204 GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTEL 263
             +P+  T+ VL++    E  L++A ++ + M+++                         
Sbjct: 283 EIVPNVITFNVLLDVFVKEGKLQEANELYKEMITR------------------------- 317

Query: 264 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF 323
                        P++IT NT+++G+C   R+ EA  +L+ MV  K C+PD VTFT++I 
Sbjct: 318 ----------GISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNK-CSPDIVTFTSLIK 366

Query: 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 383
           G   V R+ + + + ++ + +RG     VTY+ +++G  +  +++ A+E+F  M+  GV+
Sbjct: 367 GYCMVKRVDDGMKV-FRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVL 425

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
            D  TY I++DGLC++ +L++A   ++D+          +Y  +I+G+C+ GK+ +A + 
Sbjct: 426 PDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNL 485

Query: 444 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGN 503
              L   GV PN++ Y V+I G CK     EA  +LR+M ++G  P+  T+  L + H  
Sbjct: 486 FCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLR 545

Query: 504 RGN 506
            G+
Sbjct: 546 DGD 548



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 105/441 (23%), Positives = 219/441 (49%), Gaps = 7/441 (1%)

Query: 24  GHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERA 83
           G+ P+  ++ TLI G    G++  A  + D M   G  P+ +TY+ +V G+ R+ D   A
Sbjct: 143 GYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLA 202

Query: 84  NVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACG 143
             L+ K+     EE ++  +   ++ ++DSLCR+G ++    + ++M      +      
Sbjct: 203 LDLLRKM-----EERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYN 257

Query: 144 HMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQF 203
            ++  LC++G+ +  + ++  M  R + P+++++N ++    K G    A +L +E I  
Sbjct: 258 SLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITR 317

Query: 204 GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTEL 263
           G  P+  TY  L++G C ++ L +A  +L  M+  K           ++  C++K   + 
Sbjct: 318 GISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDG 377

Query: 264 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF 323
           + V   + +     + +T + ++ GFC+ G+I+ A ++  +MV+     PD +T+  ++ 
Sbjct: 378 MKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGV-LPDVMTYGILLD 436

Query: 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 383
           GL + G++++AL + ++ + +     GIV Y  ++ G+ +  +VE+A  +F  +   GV 
Sbjct: 437 GLCDNGKLEKALEI-FEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVK 495

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
            +  TY ++I GLC+   L EA      +    N  ++  Y  +I+   R G +  +   
Sbjct: 496 PNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKL 555

Query: 444 LYELVDSGVTPNIVCYNVVID 464
           + E+   G + +     +VID
Sbjct: 556 IEEMKSCGFSADASSIKMVID 576



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 115/486 (23%), Positives = 231/486 (47%), Gaps = 42/486 (8%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           +A  LF +M     +P++V ++       RT + ++      ++   G+  N  T ++++
Sbjct: 61  DAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMI 120

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP 131
               R      A  ++ K+  ++  E D +     F  L+  L  EG V+E   + + M 
Sbjct: 121 NCFCRCCKTCFAYSVLGKVM-KLGYEPDTTT----FNTLIKGLFLEGKVSEAVVLVDRMV 175

Query: 132 QGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCM 191
           +     +      +++ +CRSG    A  ++  M +R +   + +Y++I+  LC+ G   
Sbjct: 176 ENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCID 235

Query: 192 RAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYL 251
            A  L +E    G   S  TY  LV GLC          +L+ M+S++ V          
Sbjct: 236 AAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIV---------- 285

Query: 252 RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC 311
                                    P+VIT N +++ F K G+++EA ++  +M+  +  
Sbjct: 286 -------------------------PNVITFNVLLDVFVKEGKLQEANELYKEMIT-RGI 319

Query: 312 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK 371
           +P+ +T+ T++ G     R+ EA N+L  +M +   SP IVT+ ++++G   ++RV++  
Sbjct: 320 SPNIITYNTLMDGYCMQNRLSEANNML-DLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGM 378

Query: 372 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 431
           +VF  +   G+VA++ TY+I++ G C+S ++  A+  + ++V    + D   Y  ++ GL
Sbjct: 379 KVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGL 438

Query: 432 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 491
           C +GK+ +A+    +L  S +   IV Y  +I+G CK     +A+ +   +   G+ P+ 
Sbjct: 439 CDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNV 498

Query: 492 VTWRIL 497
           +T+ ++
Sbjct: 499 MTYTVM 504



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 100/396 (25%), Positives = 186/396 (46%), Gaps = 42/396 (10%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    +  A  LF +M+++G   +VV+Y +L+ G C+ G+ +    +  +M    +
Sbjct: 225 IDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREI 284

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +PN +T++VL+   ++   ++ AN L  ++  R      +S N   +  L+D  C +  +
Sbjct: 285 VPNVITFNVLLDVFVKEGKLQEANELYKEMITR-----GISPNIITYNTLMDGYCMQNRL 339

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E   + + M + K   +      +I   C   R     +V   + KRGL  + V+Y+ +
Sbjct: 340 SEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSIL 399

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           V G C+ G    A +L +E +  G LP   TY +L++GLC    LEKA ++ +      D
Sbjct: 400 VQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFE------D 453

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           + ++++                                ++   T+I G CK G++E+A  
Sbjct: 454 LQKSKM-----------------------------DLGIVMYTTIIEGMCKGGKVEDAWN 484

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +   +   K   P+ +T+T +I GL   G + EA N+L + M + G +P   TYN ++R 
Sbjct: 485 LFCSLPC-KGVKPNVMTYTVMISGLCKKGSLSEA-NILLRKMEEDGNAPNDCTYNTLIRA 542

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 396
             R   +  + ++   M   G  AD+++  +VID L
Sbjct: 543 HLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDML 578



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 118/464 (25%), Positives = 206/464 (44%), Gaps = 51/464 (10%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           MD  C  +R+ EA+ +   M      P++V++T+LI GYC    +D   KVF  +   G+
Sbjct: 330 MDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGL 389

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           + N++TYS+LV+G  ++  ++ A     +L++ M     L  +   +  L+D LC  G +
Sbjct: 390 VANAVTYSILVQGFCQSGKIKLAE----ELFQEMVSHGVLP-DVMTYGILLDGLCDNGKL 444

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +   I ED+ + K          +I+ +C+ G+   A  +   +  +G+ P++++Y  +
Sbjct: 445 EKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVM 504

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS--- 237
           + GLCK G    A  LL +  + G  P++ TY  L+     + DL  + K+++ M S   
Sbjct: 505 ISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGF 564

Query: 238 KKDVDRTR-ICNIYLRAL-------CLIKNPT------EL-------LNVLVFMLQTQCQ 276
             D    + + ++ L A+       CL K         EL       L+ L F+    C 
Sbjct: 565 SADASSIKMVIDMLLSAMKRLTLRYCLSKGSKSRQDLLELSGSEKIRLSSLTFVKMFPCN 624

Query: 277 PDVITLNTVINGFCKMGRIEEAL-----KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRI 331
               +LN  +N     G     L     K+    V  KF   D     T    LL  G  
Sbjct: 625 TITTSLN--VNTIEARGMNSAELNRDLRKLRRSSVLKKFKNRDVRVLVT--NELLTWGLE 680

Query: 332 QEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR------VEEAKEVFNCMLGIGVVAD 385
               +L+  +       P    + A   G  R+RR      V  A+E+   M+  G+  +
Sbjct: 681 DAECDLMVDL-----ELPTDAVHYAHRAG--RMRRPGRKMTVVTAEELHKEMIQRGIAPN 733

Query: 386 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIK 429
           + TY+ +IDG C+ N+LDEA +  D +V   +    Y+ A +++
Sbjct: 734 TITYSSLIDGFCKENRLDEANQMLDLMVTKGDSDIRYLLAGLMR 777



 Score = 41.6 bits (96), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 54/109 (49%), Gaps = 11/109 (10%)

Query: 13  AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVR 72
           A +L  +M  RG  PN ++Y++LI G+C+   +D A ++ D M   G   + + Y  L+ 
Sbjct: 718 AEELHKEMIQRGIAPNTITYSSLIDGFCKENRLDEANQMLDLMVTKG--DSDIRY--LLA 773

Query: 73  GVLRTRDVERANVLMFKLWERMKEEEDLSVNNAA-FANLVDSLCREGYV 120
           G++R +          + WE +   +DLS + A+  +N       EGY 
Sbjct: 774 GLMRKKRKGSET----EGWENL--PDDLSCSTASRSSNFRSHFSLEGYA 816


>gi|297803282|ref|XP_002869525.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315361|gb|EFH45784.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 707

 Score =  211 bits (538), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 132/495 (26%), Positives = 245/495 (49%), Gaps = 13/495 (2%)

Query: 7   LSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLT 66
           + + G AH +   M  RG   NV +Y  L+ G CR  E   A  +  EMR   ++P+ ++
Sbjct: 120 MRKTGFAHGVLALMLKRGFAFNVYNYNILLKGLCRNLEFGKAVSLLREMRQNSLMPDVVS 179

Query: 67  YSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRI 126
           Y+ ++RG    +++E+A     +L   M +    S +   +  L+D+ C+ G ++E   +
Sbjct: 180 YNTVIRGFCEGKELEKA----LQLANEM-QGSGCSWSLVTWGILIDAFCKAGKMDEAMGL 234

Query: 127 AEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK 186
            ++M       +      +I   C  G       +   + +RG +P  ++YN+++ G CK
Sbjct: 235 LKEMKHKGLEADLIVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCK 294

Query: 187 HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRI 246
            G    A ++ E  ++ G  P+ +TY  L++GLCG    ++A ++L  ML K +      
Sbjct: 295 LGRLKEASEIFEFMMERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMLQKDEEPNVVT 354

Query: 247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV 306
            NI +  LC      + L ++  M + + +PD IT N+++ G C  G ++EA K+L  M+
Sbjct: 355 YNIIINKLCKDSLVADALEIVELMKKRRTRPDNITYNSLLGGLCAKGDLDEASKLLYLML 414

Query: 307 A-GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLR 365
               +  PD ++F  +I GL    R+ +AL+ +Y ++ ++  +  IVT N +L    +  
Sbjct: 415 KDSSYTDPDVISFNALIHGLCKGNRLHQALD-IYDLLVEKLGAGDIVTTNILLNSTLKSG 473

Query: 366 RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI---VWPSNIHDNY 422
            V +A E++  +    +V +S TY  +IDG C++  L+ AK     +     P ++ D  
Sbjct: 474 DVNKAMELWKQISNSKIVPNSDTYTTMIDGFCKTGMLNVAKGLLCKMRLSELPPSVFD-- 531

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
            Y  ++  LC+ G + +A     E+      P+++ +N++IDG+ K    + A  +L  M
Sbjct: 532 -YNCLLSSLCKKGTLDQAWRLFEEMQRDDSFPDVISFNIMIDGSLKAGDIKSAESLLVGM 590

Query: 483 RKNGLNPDAVTWRIL 497
              GL+PD  T+  L
Sbjct: 591 SHAGLSPDLFTYSKL 605



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 115/472 (24%), Positives = 216/472 (45%), Gaps = 9/472 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C   ++ EA  L  +MK +G   +++ YT+LI G+C  GE+D    +FDE+   G 
Sbjct: 219 IDAFCKAGKMDEAMGLLKEMKHKGLEADLIVYTSLIRGFCDCGELDRGKALFDEVLERGD 278

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P ++TY+ L+RG  +   ++ A+ +   + ER      +  N   +  L+D LC  G  
Sbjct: 279 SPCAITYNTLIRGFCKLGRLKEASEIFEFMMER-----GVRPNVYTYTGLIDGLCGVGKT 333

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E  ++   M Q            +I+ LC+      A  +V +M+KR   P  ++YNS+
Sbjct: 334 KEALQLLNLMLQKDEEPNVVTYNIIINKLCKDSLVADALEIVELMKKRRTRPDNITYNSL 393

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYL--PSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
           + GLC  G    A +LL   ++      P   ++  L+ GLC  + L +A  +   ++ K
Sbjct: 394 LGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISFNALIHGLCKGNRLHQALDIYDLLVEK 453

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
                    NI L +     +  + + +   +  ++  P+  T  T+I+GFCK G +  A
Sbjct: 454 LGAGDIVTTNILLNSTLKSGDVNKAMELWKQISNSKIVPNSDTYTTMIDGFCKTGMLNVA 513

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
             +L  M   +   P    +  ++  L   G + +A   L++ M +    P ++++N ++
Sbjct: 514 KGLLCKMRLSEL-PPSVFDYNCLLSSLCKKGTLDQAWR-LFEEMQRDDSFPDVISFNIMI 571

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
            G  +   ++ A+ +   M   G+  D  TY+ +I+   +   LDEA  F+D ++     
Sbjct: 572 DGSLKAGDIKSAESLLVGMSHAGLSPDLFTYSKLINRFLKLGYLDEAISFFDKMIDSGFE 631

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLS 470
            D ++  +++K     G+  +   F+ +LVD  V  +      V+D  C  S
Sbjct: 632 PDAHICDSVLKYCISQGETDKLTEFVKKLVDKDVVLDKELTCTVMDYMCSSS 683



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 77/168 (45%)

Query: 330 RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTY 389
           R  E     Y+ M +       V+ + +L    ++R+   A  V   ML  G   +   Y
Sbjct: 86  RNHEVAFSFYRKMLETDTFINFVSLSGLLECFVQMRKTGFAHGVLALMLKRGFAFNVYNY 145

Query: 390 AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449
            I++ GLC + +  +A     ++   S + D   Y  +I+G C   ++ +A+    E+  
Sbjct: 146 NILLKGLCRNLEFGKAVSLLREMRQNSLMPDVVSYNTVIRGFCEGKELEKALQLANEMQG 205

Query: 450 SGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           SG + ++V + ++ID  CK     EA  +L+EM+  GL  D + +  L
Sbjct: 206 SGCSWSLVTWGILIDAFCKAGKMDEAMGLLKEMKHKGLEADLIVYTSL 253


>gi|225427482|ref|XP_002263209.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 592

 Score =  211 bits (538), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 137/511 (26%), Positives = 241/511 (47%), Gaps = 42/511 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C L+RV     +   +   GH P+  ++TTLI G C  G++  A  +FD+M   G 
Sbjct: 116 INSFCHLNRVDFGFSVLAKIFKLGHQPDTATFTTLIRGLCVEGKIGEALHLFDKMVGEGF 175

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +TY  L+ G+ +  +   A  L+  + ++  E   ++ N      ++D L ++  V
Sbjct: 176 QPNGVTYGTLIHGLCKVGNSRAAIRLLRSMVQKNCEPNVITYNT-----IIDCLFKDRQV 230

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           NE   I  +M                                     +G++P++ +YNSI
Sbjct: 231 NEALNIFSEM-----------------------------------IAKGISPNVSTYNSI 255

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +HGLCK         L+ E +    +P+   +  LV+ LC E  +  A  V+  M+ +  
Sbjct: 256 IHGLCKFSEWKHVATLMNEMVDSKIMPNVVIFTTLVDALCKEGMVTIAHDVVDVMIQRGV 315

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                     +   CL     E   V   M++  C P+VI+ +T+ING+CK+ RI++A+ 
Sbjct: 316 EPDVVTYTALMDGHCLRSEMDEADKVFDTMVRKGCAPNVISYSTLINGYCKIQRIDKAMY 375

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +  +M   +   P+ VT+ T+I GL +VGR+++A+ L ++ M   G  P +VTY  +L  
Sbjct: 376 LFEEMCQREL-VPNIVTYNTLIHGLCHVGRLRDAIALFHE-MVASGQIPDLVTYRILLDY 433

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L + R +++A  +   + G  +  D  +Y IVIDG+C   +L+ A   +  +       D
Sbjct: 434 LCKTRHLDQAMAMLKAIEGSNLAPDIQSYNIVIDGMCRVGELEAAGDLFSSLSSKGLHPD 493

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
            + Y  MI GLC  G + EA     E+   G +P+   YN++  G  + +    A Q+L+
Sbjct: 494 VWTYTIMINGLCLQGLLAEATKLFREMNTDGCSPDDCTYNLITRGFLRNNETLSAIQLLQ 553

Query: 481 EMRKNGLNPDAVTWRILDKLHGNRGNDFGLR 511
           EM   G + DA T  ++ ++  + G D  ++
Sbjct: 554 EMLGRGFSADASTITLIVEMLSDDGLDQSVK 584



 Score =  206 bits (524), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 131/493 (26%), Positives = 237/493 (48%), Gaps = 7/493 (1%)

Query: 7   LSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLT 66
            + + EA   F  M      P+VV +  ++              +  +M   G+  +  T
Sbjct: 52  FNTIDEALSSFNRMLHMQPPPSVVDFAKILTSIANMKHYSTVLSLSKQMDSLGIPSDVYT 111

Query: 67  YSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRI 126
            ++++        V+    ++ K++ ++  + D     A F  L+  LC EG + E   +
Sbjct: 112 LAIVINSFCHLNRVDFGFSVLAKIF-KLGHQPD----TATFTTLIRGLCVEGKIGEALHL 166

Query: 127 AEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK 186
            + M            G +I  LC+ G +  A R++  M ++   P++++YN+I+  L K
Sbjct: 167 FDKMVGEGFQPNGVTYGTLIHGLCKVGNSRAAIRLLRSMVQKNCEPNVITYNTIIDCLFK 226

Query: 187 HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRI 246
                 A  +  E I  G  P+  TY  ++ GLC  S+ +    ++  M+  K +    I
Sbjct: 227 DRQVNEALNIFSEMIAKGISPNVSTYNSIIHGLCKFSEWKHVATLMNEMVDSKIMPNVVI 286

Query: 247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV 306
               + ALC     T   +V+  M+Q   +PDV+T   +++G C    ++EA KV + MV
Sbjct: 287 FTTLVDALCKEGMVTIAHDVVDVMIQRGVEPDVVTYTALMDGHCLRSEMDEADKVFDTMV 346

Query: 307 AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 366
             K CAP+ ++++T+I G   + RI +A+  L++ M QR   P IVTYN ++ GL  + R
Sbjct: 347 R-KGCAPNVISYSTLINGYCKIQRIDKAM-YLFEEMCQRELVPNIVTYNTLIHGLCHVGR 404

Query: 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAA 426
           + +A  +F+ M+  G + D  TY I++D LC++  LD+A      I   +   D   Y  
Sbjct: 405 LRDAIALFHEMVASGQIPDLVTYRILLDYLCKTRHLDQAMAMLKAIEGSNLAPDIQSYNI 464

Query: 427 MIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG 486
           +I G+CR G++  A      L   G+ P++  Y ++I+G C   +  EA ++ REM  +G
Sbjct: 465 VIDGMCRVGELEAAGDLFSSLSSKGLHPDVWTYTIMINGLCLQGLLAEATKLFREMNTDG 524

Query: 487 LNPDAVTWRILDK 499
            +PD  T+ ++ +
Sbjct: 525 CSPDDCTYNLITR 537



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 121/440 (27%), Positives = 196/440 (44%), Gaps = 32/440 (7%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   ++GEA  LF  M   G  PN V+Y TLIHG C+ G    A ++   M      PN
Sbjct: 154 LCVEGKIGEALHLFDKMVGEGFQPNGVTYGTLIHGLCKVGNSRAAIRLLRSMVQKNCEPN 213

Query: 64  SLTYSVLVRGVLRTRDVERA------------------------NVLMFKLWER----MK 95
            +TY+ ++  + + R V  A                         +  F  W+     M 
Sbjct: 214 VITYNTIIDCLFKDRQVNEALNIFSEMIAKGISPNVSTYNSIIHGLCKFSEWKHVATLMN 273

Query: 96  EEEDLSV--NNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSG 153
           E  D  +  N   F  LVD+LC+EG V     + + M Q     +      ++D  C   
Sbjct: 274 EMVDSKIMPNVVIFTTLVDALCKEGMVTIAHDVVDVMIQRGVEPDVVTYTALMDGHCLRS 333

Query: 154 RNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYK 213
               A +V   M ++G  P+++SY+++++G CK     +A  L EE  Q   +P+  TY 
Sbjct: 334 EMDEADKVFDTMVRKGCAPNVISYSTLINGYCKIQRIDKAMYLFEEMCQRELVPNIVTYN 393

Query: 214 VLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQT 273
            L+ GLC    L  A  +   M++   +       I L  LC  ++  + + +L  +  +
Sbjct: 394 TLIHGLCHVGRLRDAIALFHEMVASGQIPDLVTYRILLDYLCKTRHLDQAMAMLKAIEGS 453

Query: 274 QCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQE 333
              PD+ + N VI+G C++G +E A  + + + + K   PD  T+T +I GL   G + E
Sbjct: 454 NLAPDIQSYNIVIDGMCRVGELEAAGDLFSSL-SSKGLHPDVWTYTIMINGLCLQGLLAE 512

Query: 334 ALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVI 393
           A  L ++ M   G SP   TYN + RG  R      A ++   MLG G  AD++T  +++
Sbjct: 513 ATKL-FREMNTDGCSPDDCTYNLITRGFLRNNETLSAIQLLQEMLGRGFSADASTITLIV 571

Query: 394 DGLCESNQLDEAKRFWDDIV 413
           + L +       K+   + V
Sbjct: 572 EMLSDDGLDQSVKQILHEFV 591



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 91/340 (26%), Positives = 147/340 (43%), Gaps = 41/340 (12%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    V  AH +   M  RG  P+VV+YT L+ G+C   EMD A KVFD M   G 
Sbjct: 291 VDALCKEGMVTIAHDVVDVMIQRGVEPDVVTYTALMDGHCLRSEMDEADKVFDTMVRKGC 350

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN ++YS L+ G  + + +++A      L+E M + E L  N   +  L+  LC  G +
Sbjct: 351 APNVISYSTLINGYCKIQRIDKA----MYLFEEMCQRE-LVPNIVTYNTLIHGLCHVGRL 405

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +   +  +M     + +      ++D LC++     A  ++  +    L P + SYN +
Sbjct: 406 RDAIALFHEMVASGQIPDLVTYRILLDYLCKTRHLDQAMAMLKAIEGSNLAPDIQSYNIV 465

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G+C+ G    A  L       G  P   TY +++ GLC +  L +A K+ + M +   
Sbjct: 466 IDGMCRVGELEAAGDLFSSLSSKGLHPDVWTYTIMINGLCLQGLLAEATKLFREMNTDG- 524

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                             C PD  T N +  GF +      A++
Sbjct: 525 ----------------------------------CSPDDCTYNLITRGFLRNNETLSAIQ 550

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQ 340
           +L +M+   F A DA T T I+  L + G  Q    +L++
Sbjct: 551 LLQEMLGRGFSA-DASTITLIVEMLSDDGLDQSVKQILHE 589


>gi|225459022|ref|XP_002285611.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like isoform 1 [Vitis vinifera]
          Length = 610

 Score =  211 bits (537), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 124/476 (26%), Positives = 242/476 (50%), Gaps = 10/476 (2%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           +  K    M  RG +P+++  T+LI G+CR G+   A  V + +   G +P+ +TY+VL+
Sbjct: 132 DGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDVITYNVLI 191

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP 131
            G  ++ +++ A     ++ +RM    D+      +  ++ +LC  G + +   + +   
Sbjct: 192 SGYCKSGEIDNA----LQVLDRMNVAPDV----VTYNTILRTLCDSGKLKQAMEVLDRQL 243

Query: 132 QGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCM 191
           Q +   +      +I++ C+      A +++  MR +G  P +V+YN +++G+CK G   
Sbjct: 244 QKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLD 303

Query: 192 RAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYL 251
            A + L     +G  P+  T+ +++  +C       A K+L  ML K         NI +
Sbjct: 304 EAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILI 363

Query: 252 RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC 311
             LC        +++L  M    C P+ ++ N +++GFCK  +++ A++ L+ MV+ + C
Sbjct: 364 NFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVS-RGC 422

Query: 312 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK 371
            PD VT+ T++  L   G++  A+ +L Q +  +G SP ++TYN V+ GL ++ + E A 
Sbjct: 423 YPDIVTYNTLLTALCKDGKVDVAVEILNQ-LSSKGCSPVLITYNTVIDGLSKVGKTERAI 481

Query: 372 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 431
           ++ + M   G+  D  TY+ ++ GL    ++DEA +F+ D+       +   Y +++ GL
Sbjct: 482 KLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGL 541

Query: 432 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
           C+S +   A+ FL  ++     P    Y ++I+G     + +EA  +L E+   GL
Sbjct: 542 CKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNELCSRGL 597



 Score =  211 bits (536), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 129/450 (28%), Positives = 240/450 (53%), Gaps = 13/450 (2%)

Query: 6   GLSRVGEAHKLFFDMK---SRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           G  R+G+  K  + M+     G VP+V++Y  LI GYC++GE+D A +V D M    V P
Sbjct: 158 GFCRIGKTKKATWVMEILEQSGAVPDVITYNVLISGYCKSGEIDNALQVLDRM---NVAP 214

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           + +TY+ ++R +  +  +++A     ++ +R  ++E    +   +  L+++ C+E  V +
Sbjct: 215 DVVTYNTILRTLCDSGKLKQA----MEVLDRQLQKE-CYPDVITYTILIEATCKESGVGQ 269

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
             ++ ++M    S  +      +I+ +C+ GR   A + +  M   G  P+++++N I+ 
Sbjct: 270 AMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILR 329

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
            +C  G  M A +LL + ++ G  PS  T+ +L+  LC +  L +A  +L+ M       
Sbjct: 330 SMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTP 389

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
            +   N  L   C  K     +  L  M+   C PD++T NT++   CK G+++ A+++L
Sbjct: 390 NSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEIL 449

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
           N + + K C+P  +T+ T+I GL  VG+ + A+ LL + M ++G  P I+TY++++ GL 
Sbjct: 450 NQL-SSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDE-MRRKGLKPDIITYSSLVSGLS 507

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
           R  +V+EA + F+ + G+G+  ++ TY  ++ GLC+S Q D A  F   ++         
Sbjct: 508 REGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEA 567

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGV 452
            Y  +I+G+   G   EA+  L EL   G+
Sbjct: 568 TYTILIEGIAYEGLAKEALDLLNELCSRGL 597



 Score =  199 bits (505), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 117/389 (30%), Positives = 195/389 (50%), Gaps = 5/389 (1%)

Query: 109 NLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKR 168
           N +  L R G + + F+  E M     + +   C  +I   CR G+   A+ V+ ++ + 
Sbjct: 119 NHLRRLVRNGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQS 178

Query: 169 GLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKA 228
           G  P +++YN ++ G CK G    A Q+L+   +    P   TY  ++  LC    L++A
Sbjct: 179 GAVPDVITYNVLISGYCKSGEIDNALQVLD---RMNVAPDVVTYNTILRTLCDSGKLKQA 235

Query: 229 RKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVING 288
            +VL   L K+         I + A C      + + +L  M     +PDV+T N +ING
Sbjct: 236 MEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLING 295

Query: 289 FCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYS 348
            CK GR++EA+K LN+M     C P+ +T   I+  + + GR  +A  LL  ++ ++G S
Sbjct: 296 ICKEGRLDEAIKFLNNM-PSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDML-RKGCS 353

Query: 349 PGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRF 408
           P +VT+N ++  L R   +  A ++   M   G   +S +Y  ++ G C+  ++D A  +
Sbjct: 354 PSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEY 413

Query: 409 WDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACK 468
            D +V      D   Y  ++  LC+ GK+  AV  L +L   G +P ++ YN VIDG  K
Sbjct: 414 LDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSK 473

Query: 469 LSMKREAYQILREMRKNGLNPDAVTWRIL 497
           +     A ++L EMR+ GL PD +T+  L
Sbjct: 474 VGKTERAIKLLDEMRRKGLKPDIITYSSL 502



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 98/393 (24%), Positives = 182/393 (46%), Gaps = 42/393 (10%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C  S VG+A KL  +M+++G  P+VV+Y  LI+G C+ G +D A K  + M   G 
Sbjct: 258 IEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGC 317

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +T+++++R +  T     A  L+  +  +       S +   F  L++ LCR+G +
Sbjct: 318 QPNVITHNIILRSMCSTGRWMDAEKLLSDMLRK-----GCSPSVVTFNILINFLCRQGLL 372

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                I E MP         +   ++   C+  +   A   + +M  RG  P +V+YN++
Sbjct: 373 GRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTL 432

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +  LCK G    A ++L +    G  P   TY  +++GL      E+A K+L  M  K  
Sbjct: 433 LTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKG- 491

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                              +PD+IT +++++G  + G+++EA+K
Sbjct: 492 ----------------------------------LKPDIITYSSLVSGLSREGKVDEAIK 517

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
             +D+  G    P+A+T+ +I+ GL    +   A++ L  ++ +R   P   TY  ++ G
Sbjct: 518 FFHDL-EGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKR-CKPTEATYTILIEG 575

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVI 393
           +      +EA ++ N +   G+V  S+   + +
Sbjct: 576 IAYEGLAKEALDLLNELCSRGLVKKSSAEQVAV 608



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 79/279 (28%), Positives = 154/279 (55%), Gaps = 7/279 (2%)

Query: 224 DLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLN 283
           +LE   K L+ M+ + D+     C   +R  C I    +   V+  + Q+   PDVIT N
Sbjct: 129 ELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDVITYN 188

Query: 284 TVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMP 343
            +I+G+CK G I+ AL+VL+ M      APD VT+ TI+  L + G++++A+ +L + + 
Sbjct: 189 VLISGYCKSGEIDNALQVLDRMNV----APDVVTYNTILRTLCDSGKLKQAMEVLDRQLQ 244

Query: 344 QRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLD 403
           +  Y P ++TY  ++    +   V +A ++ + M   G   D  TY ++I+G+C+  +LD
Sbjct: 245 KECY-PDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLD 303

Query: 404 EAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463
           EA +F +++       +   +  +++ +C +G+  +A   L +++  G +P++V +N++I
Sbjct: 304 EAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILI 363

Query: 464 DGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
           +  C+  +   A  IL +M  +G  P+++++  L  LHG
Sbjct: 364 NFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPL--LHG 400


>gi|224130706|ref|XP_002328356.1| predicted protein [Populus trichocarpa]
 gi|222838071|gb|EEE76436.1| predicted protein [Populus trichocarpa]
          Length = 613

 Score =  211 bits (537), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 143/497 (28%), Positives = 227/497 (45%), Gaps = 77/497 (15%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   ++ EA +LF +M  RGH PNV+SYTT+I+G C+TG   +A  VF +M   G 
Sbjct: 170 INGLCNEGKIKEAVELFNEMVKRGHEPNVISYTTVINGLCKTGNTSMAVDVFKKMEQNGC 229

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +TYS ++                                        DSLC++  V
Sbjct: 230 KPNVVTYSTII----------------------------------------DSLCKDRLV 249

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           N+      +M +                                   RG+ P++ +YNSI
Sbjct: 250 NDAMEFLSEMVE-----------------------------------RGIPPNVFTYNSI 274

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           VHG C  G    A +L +E +    +P+  T+ +LV+GLC E  + +AR V + M  K  
Sbjct: 275 VHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDGLCKEGMVSEARLVFETMTEKGV 334

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                  N  +   CL +   E   V   M++  C P   + N +ING+CK  R++EA  
Sbjct: 335 EPDISTYNALMDGYCLQRLMNEAKKVFEIMIRKGCAPGAHSYNILINGYCKSRRMDEAKS 394

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +L +M   K   PD VT++T++ GL  +GR +EALN L++ M   G  P +VTY  +L G
Sbjct: 395 LLAEMYH-KALNPDTVTYSTLMQGLCQLGRPKEALN-LFKEMCSYGPHPNLVTYVILLDG 452

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
             +   ++EA ++   M    +  +   Y I+I+G+  + +L+ AK  +  +       D
Sbjct: 453 FCKHGHLDEALKLLKSMKEKKLEPNIVHYTILIEGMFIAGKLEVAKELFSKLFGDGTRPD 512

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              Y  MIKGL + G   EA     ++ D G  PN   YNV+I G  +      A +++ 
Sbjct: 513 IRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSYNVMIQGFLQNQDSSTAIRLID 572

Query: 481 EMRKNGLNPDAVTWRIL 497
           EM     + +  T+++L
Sbjct: 573 EMVGKRFSVNLSTFQML 589



 Score =  202 bits (514), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 112/391 (28%), Positives = 207/391 (52%), Gaps = 2/391 (0%)

Query: 107 FANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMR 166
           F   + S  ++   + V  +   M   +  +  ++   +I+ LCR      +  V+  M 
Sbjct: 96  FGKFLGSFAKKKQYSTVVSLCNQMDLFRVTHNVYSLNILINCLCRLNHVDFSVSVLGKMF 155

Query: 167 KRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLE 226
           K G+ P  +++N++++GLC  G    A +L  E ++ G+ P+  +Y  ++ GLC   +  
Sbjct: 156 KLGIHPDAITFNALINGLCNEGKIKEAVELFNEMVKRGHEPNVISYTTVINGLCKTGNTS 215

Query: 227 KARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVI 286
            A  V + M            +  + +LC  +   + +  L  M++    P+V T N+++
Sbjct: 216 MAVDVFKKMEQNGCKPNVVTYSTIIDSLCKDRLVNDAMEFLSEMVERGIPPNVFTYNSIV 275

Query: 287 NGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
           +GFC +G++ EA ++  +MV G+   P+ VTFT ++ GL   G + EA  L+++ M ++G
Sbjct: 276 HGFCNLGQLNEATRLFKEMV-GRDVMPNTVTFTILVDGLCKEGMVSEA-RLVFETMTEKG 333

Query: 347 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
             P I TYNA++ G    R + EAK+VF  M+  G    + +Y I+I+G C+S ++DEAK
Sbjct: 334 VEPDISTYNALMDGYCLQRLMNEAKKVFEIMIRKGCAPGAHSYNILINGYCKSRRMDEAK 393

Query: 407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466
               ++   +   D   Y+ +++GLC+ G+  EA++   E+   G  PN+V Y +++DG 
Sbjct: 394 SLLAEMYHKALNPDTVTYSTLMQGLCQLGRPKEALNLFKEMCSYGPHPNLVTYVILLDGF 453

Query: 467 CKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           CK     EA ++L+ M++  L P+ V + IL
Sbjct: 454 CKHGHLDEALKLLKSMKEKKLEPNIVHYTIL 484



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 104/394 (26%), Positives = 190/394 (48%), Gaps = 42/394 (10%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    V +A +   +M  RG  PNV +Y +++HG+C  G+++ A ++F EM    V
Sbjct: 240 IDSLCKDRLVNDAMEFLSEMVERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDV 299

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +PN++T+++LV G+ +   V  A  L+F+       E D+S  NA    L+D  C +  +
Sbjct: 300 MPNTVTFTILVDGLCKEGMVSEAR-LVFETMTEKGVEPDISTYNA----LMDGYCLQRLM 354

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           NE  ++ E M +        +   +I+  C+S R   A  ++  M  + L P  V+Y+++
Sbjct: 355 NEAKKVFEIMIRKGCAPGAHSYNILINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYSTL 414

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GLC+ G    A  L +E   +G  P+  TY +L++G C    L++A K+L+ M  KK 
Sbjct: 415 MQGLCQLGRPKEALNLFKEMCSYGPHPNLVTYVILLDGFCKHGHLDEALKLLKSMKEKK- 473

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                              +P+++    +I G    G++E A +
Sbjct: 474 ----------------------------------LEPNIVHYTILIEGMFIAGKLEVAKE 499

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           + + +  G    PD  T+T +I GLL  G   EA + L++ M   G+ P   +YN +++G
Sbjct: 500 LFSKLF-GDGTRPDIRTYTVMIKGLLKEGLSDEAYD-LFRKMEDDGFLPNSCSYNVMIQG 557

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVID 394
             + +    A  + + M+G     + +T+ +++D
Sbjct: 558 FLQNQDSSTAIRLIDEMVGKRFSVNLSTFQMLLD 591


>gi|356551209|ref|XP_003543970.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Glycine max]
          Length = 687

 Score =  211 bits (537), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 135/483 (27%), Positives = 232/483 (48%), Gaps = 42/483 (8%)

Query: 24  GHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERA 83
           G  P VV+Y T++  +C+ G +  A ++  +M+  G  PN +TY+VLV G+  + ++E+A
Sbjct: 197 GICPTVVTYNTMLDSFCKKGMVQEALQLLFQMQAMGCSPNDVTYNVLVNGLSHSGEMEQA 256

Query: 84  NVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACG 143
             L+  +         L V+   +  L+   C +G + E  R+ E+M    +V       
Sbjct: 257 KELIQDMLRL-----GLEVSVYTYDPLIRGYCEKGQIEEASRLGEEMLSRGAVPTVVTYN 311

Query: 144 HMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQF 203
            ++  LC+ GR   A +++ VM  + L P LVSYN++++G  + G    A+ L  E    
Sbjct: 312 TIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRYR 371

Query: 204 GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTEL 263
              PS  TY  L++GLC   DL+ A ++       KD                       
Sbjct: 372 SLAPSVVTYNTLIDGLCRLGDLDVAMRL-------KDE---------------------- 402

Query: 264 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF 323
                 M++    PDV T  T + GFCKMG +  A ++ ++M+  +   PD   + T I 
Sbjct: 403 ------MIKHGPDPDVFTFTTFVRGFCKMGNLPMAKELFDEML-NRGLQPDRFAYITRIV 455

Query: 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 383
           G L +G   +A  +  + M  RG+ P ++TYN  + GL +L  ++EA E+   ML  G+V
Sbjct: 456 GELKLGDPSKAFGM-QEEMLARGFPPDLITYNVFIDGLHKLGNLKEASELVKKMLYNGLV 514

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
            D  TY  +I     +  L +A+  + +++          Y  +I      G++  A+  
Sbjct: 515 PDHVTYTSIIHAHLMAGHLRKARALFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILH 574

Query: 444 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGN 503
            +E+ + GV PN++ YN +I+G CK+    +AY    EM+  G++P+  T+ IL   + N
Sbjct: 575 FFEMHEKGVHPNVITYNALINGLCKVRKMDQAYNFFAEMQAKGISPNKYTYTILINENCN 634

Query: 504 RGN 506
            G+
Sbjct: 635 LGH 637



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 125/478 (26%), Positives = 222/478 (46%), Gaps = 42/478 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C    V EA +L F M++ G  PN V+Y  L++G   +GEM+ A ++  +M   G+
Sbjct: 209 LDSFCKKGMVQEALQLLFQMQAMGCSPNDVTYNVLVNGLSHSGEMEQAKELIQDMLRLGL 268

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             +  TY  L+RG      +E A+ L  ++  R      ++ N   +      LC+ G V
Sbjct: 269 EVSVYTYDPLIRGYCEKGQIEEASRLGEEMLSRGAVPTVVTYNTIMYG-----LCKWGRV 323

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           ++  ++ + M     + +  +   +I    R G    A  +   +R R L PS+V+YN++
Sbjct: 324 SDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRYRSLAPSVVTYNTL 383

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK- 239
           + GLC+ G    A +L +E I+ G  P   T+   V G C   +L  A+++   ML++  
Sbjct: 384 IDGLCRLGDLDVAMRLKDEMIKHGPDPDVFTFTTFVRGFCKMGNLPMAKELFDEMLNRGL 443

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
             DR       +  L L  +P++   +   ML     PD+IT N  I+G  K+G ++EA 
Sbjct: 444 QPDRFAYITRIVGELKL-GDPSKAFGMQEEMLARGFPPDLITYNVFIDGLHKLGNLKEAS 502

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQV------------------ 341
           +++  M+      PD VT+T+II   L  G +++A  L  ++                  
Sbjct: 503 ELVKKMLYNGL-VPDHVTYTSIIHAHLMAGHLRKARALFLEMLSKGIFPSVVTYTVLIHS 561

Query: 342 ----------------MPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 385
                           M ++G  P ++TYNA++ GL ++R++++A   F  M   G+  +
Sbjct: 562 YAVRGRLKLAILHFFEMHEKGVHPNVITYNALINGLCKVRKMDQAYNFFAEMQAKGISPN 621

Query: 386 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
             TY I+I+  C      EA R + D++      D+  + +++K L +  K+H   H 
Sbjct: 622 KYTYTILINENCNLGHWQEALRLYKDMLDREIQPDSCTHRSLLKHLNKDYKLHVVRHL 679



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 104/345 (30%), Positives = 174/345 (50%), Gaps = 18/345 (5%)

Query: 166 RKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY--------------LPS-EH 210
           R+ G   S +SY+ I+  L ++G    AY ++E+ +                  +PS + 
Sbjct: 73  RQTGFKRSEISYSVILDILARNGLMRSAYCVMEKVVSVKMENGVIDVVSSSEVSMPSVKL 132

Query: 211 TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL-NVLVF 269
              +L+     +S LEK   V   M+SK  +   + CN  LR L    N  ++   V   
Sbjct: 133 ILDLLLWIYVKKSLLEKCLLVFYKMVSKGLLPDVKNCNRVLRLLRDRDNNIDVAREVYNV 192

Query: 270 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG 329
           M++    P V+T NT+++ FCK G ++EAL++L  M A   C+P+ VT+  ++ GL + G
Sbjct: 193 MVECGICPTVVTYNTMLDSFCKKGMVQEALQLLFQMQAMG-CSPNDVTYNVLVNGLSHSG 251

Query: 330 RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTY 389
            +++A  L+ Q M + G    + TY+ ++RG     ++EEA  +   ML  G V    TY
Sbjct: 252 EMEQAKELI-QDMLRLGLEVSVYTYDPLIRGYCEKGQIEEASRLGEEMLSRGAVPTVVTY 310

Query: 390 AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449
             ++ GLC+  ++ +A++  D +V  + + D   Y  +I G  R G I EA     EL  
Sbjct: 311 NTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRY 370

Query: 450 SGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
             + P++V YN +IDG C+L     A ++  EM K+G +PD  T+
Sbjct: 371 RSLAPSVVTYNTLIDGLCRLGDLDVAMRLKDEMIKHGPDPDVFTF 415



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 86/338 (25%), Positives = 137/338 (40%), Gaps = 40/338 (11%)

Query: 7   LSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLT 66
           L  +GEA  LF +++ R   P+VV+Y TLI G CR G++DVA ++ DEM   G  P+  T
Sbjct: 355 LGNIGEAFLLFAELRYRSLAPSVVTYNTLIDGLCRLGDLDVAMRLKDEMIKHGPDPDVFT 414

Query: 67  YSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRI 126
           ++  VRG  +  ++  A  L  ++  R      L  +  A+   +    + G  ++ F +
Sbjct: 415 FTTFVRGFCKMGNLPMAKELFDEMLNR-----GLQPDRFAYITRIVGELKLGDPSKAFGM 469

Query: 127 AEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK 186
            E+M       +       ID L + G    AS +V  M   GL P  V+Y SI+H    
Sbjct: 470 QEEMLARGFPPDLITYNVFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLM 529

Query: 187 HGGCMRAYQLLEEGIQFGYLPSEHTYKVLV------------------------------ 216
            G   +A  L  E +  G  PS  TY VL+                              
Sbjct: 530 AGHLRKARALFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVIT 589

Query: 217 -----EGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFML 271
                 GLC    +++A      M +K          I +   C + +  E L +   ML
Sbjct: 590 YNALINGLCKVRKMDQAYNFFAEMQAKGISPNKYTYTILINENCNLGHWQEALRLYKDML 649

Query: 272 QTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK 309
             + QPD  T  +++    K  ++     + N + AG+
Sbjct: 650 DREIQPDSCTHRSLLKHLNKDYKLHVVRHLENVIAAGE 687


>gi|302820627|ref|XP_002991980.1| hypothetical protein SELMODRAFT_162081 [Selaginella moellendorffii]
 gi|300140222|gb|EFJ06948.1| hypothetical protein SELMODRAFT_162081 [Selaginella moellendorffii]
          Length = 509

 Score =  211 bits (537), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 135/482 (28%), Positives = 237/482 (49%), Gaps = 13/482 (2%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           EA+++F D       P+  +Y TLI G+C+  ++  A  +  EM+  G+ P  +T+  L+
Sbjct: 35  EAYRVFKDELVTLFRPDDFTYGTLIRGFCKAEQIPQAVNLLGEMKAAGITPTIVTFGSLI 94

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAF--ANLVDSLCREGYVNEVFRIAED 129
           R +      ++A     +++ +M    D+ V   AF    ++  LC+   ++      E 
Sbjct: 95  RKLCELNFTDKA----LQIFHQMI---DMKVKPDAFLYTVVIGHLCKINKLDLAASYFER 147

Query: 130 MPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG 189
           M Q   + ++     ++ SL ++ +     ++   M  +G +P LV+Y ++V+G CK G 
Sbjct: 148 MVQSGCLPDKVTYTVLVHSLFKACKWEQGHQIFEEMLSKGHSPELVTYATVVNGYCKAGR 207

Query: 190 CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNI 249
             +A  L+      G  PS   Y  L++GLC     ++AR++  F ++  DV    +   
Sbjct: 208 IDQALSLMRRLKGTGRSPSGSLYSTLIDGLCKHDRHDEAREL--FEMAAGDVQDVIVYTS 265

Query: 250 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK 309
           ++  LC      E   V V M++  C PD ++ N +I   CK  R+ EA K L D    +
Sbjct: 266 FISGLCKAGKLDEAKAVHVKMIEAGCAPDPVSYNVIIYSLCKDNRVSEA-KELMDQAMER 324

Query: 310 FCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEE 369
            C P     T ++ GL    R++EA  +L +++     +P +VTY+AV+ GL +  R+++
Sbjct: 325 KCMPGVPVCTVLVDGLCKSRRVEEACVILERMLETGDRAPSVVTYSAVIDGLCKADRLDD 384

Query: 370 AKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIK 429
           A  V   M   G V D  TY  +ID  C+  +LDEA+  +  +       D   Y  +I+
Sbjct: 385 AYVVLQKMRRAGCVPDVVTYTAIIDAFCKVGRLDEARELFQRMHERGCALDVVAYNILIR 444

Query: 430 GLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNP 489
           G CR+ K+ EA+  + E+   G+ PN+V  + ++DG CK S   EA  ++ +M    L P
Sbjct: 445 GYCRAAKVDEAIAMIEEMAGRGIQPNVVSLSTIVDGLCKESRVEEARLLMEKMNFESL-P 503

Query: 490 DA 491
           D+
Sbjct: 504 DS 505



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 117/417 (28%), Positives = 216/417 (51%), Gaps = 14/417 (3%)

Query: 3   QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           +LC L+   +A ++F  M      P+   YT +I   C+  ++D+A   F+ M   G LP
Sbjct: 96  KLCELNFTDKALQIFHQMIDMKVKPDAFLYTVVIGHLCKINKLDLAASYFERMVQSGCLP 155

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           + +TY+VLV  + +    E+ + +  ++  +    E ++     +A +V+  C+ G +++
Sbjct: 156 DKVTYTVLVHSLFKACKWEQGHQIFEEMLSKGHSPELVT-----YATVVNGYCKAGRIDQ 210

Query: 123 VFRIAEDMP-QGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
              +   +   G+S +       +ID LC+  R H  +R ++ M   G    ++ Y S +
Sbjct: 211 ALSLMRRLKGTGRSPSGSLY-STLIDGLCKHDR-HDEARELFEM-AAGDVQDVIVYTSFI 267

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
            GLCK G    A  +  + I+ G  P   +Y V++  LC ++ + +A++++   + +K +
Sbjct: 268 SGLCKAGKLDEAKAVHVKMIEAGCAPDPVSYNVIIYSLCKDNRVSEAKELMDQAMERKCM 327

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQT-QCQPDVITLNTVINGFCKMGRIEEALK 300
               +C + +  LC  +   E   +L  ML+T    P V+T + VI+G CK  R+++A  
Sbjct: 328 PGVPVCTVLVDGLCKSRRVEEACVILERMLETGDRAPSVVTYSAVIDGLCKADRLDDAYV 387

Query: 301 VLNDM-VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           VL  M  AG  C PD VT+T II     VGR+ EA   L+Q M +RG +  +V YN ++R
Sbjct: 388 VLQKMRRAG--CVPDVVTYTAIIDAFCKVGRLDEARE-LFQRMHERGCALDVVAYNILIR 444

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416
           G  R  +V+EA  +   M G G+  +  + + ++DGLC+ ++++EA+   + + + S
Sbjct: 445 GYCRAAKVDEAIAMIEEMAGRGIQPNVVSLSTIVDGLCKESRVEEARLLMEKMNFES 501



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 127/491 (25%), Positives = 224/491 (45%), Gaps = 59/491 (12%)

Query: 16  LFFD-MKSR-GHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRG 73
           LFF   K+R G   N  +  +L+  +   G    AY+VF +       P+  TY  L+RG
Sbjct: 2   LFFQWAKARPGFQHNTYTCNSLLEVFVNDGCHREAYRVFKDELVTLFRPDDFTYGTLIRG 61

Query: 74  VLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQG 133
             +   + +A  L+ ++     +   ++     F +L+  LC   + ++  +I   M   
Sbjct: 62  FCKAEQIPQAVNLLGEM-----KAAGITPTIVTFGSLIRKLCELNFTDKALQIFHQMIDM 116

Query: 134 KSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRA 193
           K   + F    +I  LC+  +   A+     M + G  P  V+Y  +VH L K     + 
Sbjct: 117 KVKPDAFLYTVVIGHLCKINKLDLAASYFERMVQSGCLPDKVTYTVLVHSLFKACKWEQG 176

Query: 194 YQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRA 253
           +Q+ EE +  G+ P   TY  +V G C    +++A   L  M   K   R+   ++Y   
Sbjct: 177 HQIFEEMLSKGHSPELVTYATVVNGYCKAGRIDQA---LSLMRRLKGTGRSPSGSLY--- 230

Query: 254 LCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAP 313
                                        +T+I+G CK  R +EA + L +M AG     
Sbjct: 231 -----------------------------STLIDGLCKHDRHDEA-RELFEMAAGD--VQ 258

Query: 314 DAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEV 373
           D + +T+ I GL   G++ EA   ++  M + G +P  V+YN ++  L +  RV EAKE+
Sbjct: 259 DVIVYTSFISGLCKAGKLDEA-KAVHVKMIEAGCAPDPVSYNVIIYSLCKDNRVSEAKEL 317

Query: 374 FN------CMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV-YAA 426
            +      CM G+ V        +++DGLC+S +++EA    + ++   +   + V Y+A
Sbjct: 318 MDQAMERKCMPGVPVCT------VLVDGLCKSRRVEEACVILERMLETGDRAPSVVTYSA 371

Query: 427 MIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG 486
           +I GLC++ ++ +A   L ++  +G  P++V Y  +ID  CK+    EA ++ + M + G
Sbjct: 372 VIDGLCKADRLDDAYVVLQKMRRAGCVPDVVTYTAIIDAFCKVGRLDEARELFQRMHERG 431

Query: 487 LNPDAVTWRIL 497
              D V + IL
Sbjct: 432 CALDVVAYNIL 442



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 69/130 (53%), Gaps = 5/130 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   R+ +A+ +   M+  G VP+VV+YT +I  +C+ G +D A ++F  M   G 
Sbjct: 373 IDGLCKADRLDDAYVVLQKMRRAGCVPDVVTYTAIIDAFCKVGRLDEARELFQRMHERGC 432

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             + + Y++L+RG  R   V+ A  ++ ++  R      +  N  + + +VD LC+E  V
Sbjct: 433 ALDVVAYNILIRGYCRAAKVDEAIAMIEEMAGR-----GIQPNVVSLSTIVDGLCKESRV 487

Query: 121 NEVFRIAEDM 130
            E   + E M
Sbjct: 488 EEARLLMEKM 497



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 60/102 (58%), Gaps = 1/102 (0%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C + R+ EA +LF  M  RG   +VV+Y  LI GYCR  ++D A  + +EM   G+
Sbjct: 408 IDAFCKVGRLDEARELFQRMHERGCALDVVAYNILIRGYCRAAKVDEAIAMIEEMAGRGI 467

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKL-WERMKEEEDLS 101
            PN ++ S +V G+ +   VE A +LM K+ +E + + + +S
Sbjct: 468 QPNVVSLSTIVDGLCKESRVEEARLLMEKMNFESLPDSDPVS 509


>gi|225456753|ref|XP_002268934.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580 [Vitis vinifera]
 gi|297733985|emb|CBI15232.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  210 bits (534), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 140/500 (28%), Positives = 251/500 (50%), Gaps = 13/500 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M   C  SR   A +L  +M S+G   + V+Y T+I G+        A+++F+EM   G+
Sbjct: 153 MKSFCRTSRPHAARRLLNNMPSQGCESSAVAYCTVIGGFYEENHRVEAHELFEEMLGLGI 212

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ + ++ L+  + R   V+ +  L+ K+ +R       +VN       +   C+   +
Sbjct: 213 CPDIMAFNKLIHTLCRKGHVQESERLLNKVLKRGVSPNLFTVN-----IFIQGFCQRAML 267

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           NE  R+ + + +G +  +      +I  LC++ +   A   +  M   G  P   +YNSI
Sbjct: 268 NEAIRLLDGVGRGLTP-DVITYNTLICGLCKNFKVVEAEHYLRKMVNEGYEPDGFTYNSI 326

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G CK G    A Q+L +G   G++P E TY  L+ GLC + D+++A  V    + K  
Sbjct: 327 IDGYCKLGMMQNADQILRDGAFKGFVPDESTYCSLINGLCQDGDIDRAINVFNEAMEKGL 386

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                +CN  ++ L       + L ++  M +  C PD+ T N VING CK+G + +A  
Sbjct: 387 KPNLVLCNTLVKGLSQQGLILQALKLMNEMSENGCSPDIWTYNLVINGLCKIGCVSDADN 446

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           ++ D +A K   PD  TF T+I G     ++  A+ ++ + M   G SP ++TYN++L G
Sbjct: 447 LVIDAIA-KGHLPDVFTFNTLIDGYCKKLKLDNAIEIVDR-MWNHGVSPDVITYNSILNG 504

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L +  + E+    F  M+  G V +  TY I+ +  C++ +++EA    +++       D
Sbjct: 505 LCKAGKYEDVMGTFKLMMEKGCVPNIITYNILTESFCKARKVEEALNLIEEMQNKGLTPD 564

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDS--GVTPNIVCYNVVIDG-ACKLSMKREAYQ 477
              +  ++KG C +G +  A   L++ VD     +  I  YN++I+  A KL+M   A +
Sbjct: 565 VVNFGTLMKGFCDNGDLDGAYQ-LFKRVDEQYKFSHTIATYNIMINAFAGKLNMNM-AEK 622

Query: 478 ILREMRKNGLNPDAVTWRIL 497
           +  +M +NG +PD+ T+R++
Sbjct: 623 LFNKMCENGFSPDSYTYRVM 642



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 141/500 (28%), Positives = 239/500 (47%), Gaps = 53/500 (10%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           +AHK++  M+ +G VP+V ++T  +  +CRT     A ++ + M   G   +++ Y  ++
Sbjct: 129 QAHKVYMRMRDKGIVPDVYTFTIRMKSFCRTSRPHAARRLLNNMPSQGCESSAVAYCTVI 188

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAED-M 130
            G       E   V   +L+E M     +  +  AF  L+ +LCR+G+V E  R+    +
Sbjct: 189 GGFYE----ENHRVEAHELFEEMLGL-GICPDIMAFNKLIHTLCRKGHVQESERLLNKVL 243

Query: 131 PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGC 190
            +G S N  F     I   C+    + A R++  +  RGLTP +++YN+++ GLCK+   
Sbjct: 244 KRGVSPNL-FTVNIFIQGFCQRAMLNEAIRLLDGV-GRGLTPDVITYNTLICGLCKNFKV 301

Query: 191 MRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIY 250
           + A   L + +  GY P   TY  +++G C    ++ A ++L+    K  V         
Sbjct: 302 VEAEHYLRKMVNEGYEPDGFTYNSIIDGYCKLGMMQNADQILRDGAFKGFV--------- 352

Query: 251 LRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKF 310
                                     PD  T  ++ING C+ G I+ A+ V N+ +  K 
Sbjct: 353 --------------------------PDESTYCSLINGLCQDGDIDRAINVFNEAME-KG 385

Query: 311 CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEA 370
             P+ V   T++ GL   G I +AL L+ + M + G SP I TYN V+ GL ++  V +A
Sbjct: 386 LKPNLVLCNTLVKGLSQQGLILQALKLMNE-MSENGCSPDIWTYNLVINGLCKIGCVSDA 444

Query: 371 KEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA----KRFWDDIVWPSNIHDNYVYAA 426
             +    +  G + D  T+  +IDG C+  +LD A     R W+  V P    D   Y +
Sbjct: 445 DNLVIDAIAKGHLPDVFTFNTLIDGYCKKLKLDNAIEIVDRMWNHGVSP----DVITYNS 500

Query: 427 MIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG 486
           ++ GLC++GK  + +     +++ G  PNI+ YN++ +  CK     EA  ++ EM+  G
Sbjct: 501 ILNGLCKAGKYEDVMGTFKLMMEKGCVPNIITYNILTESFCKARKVEEALNLIEEMQNKG 560

Query: 487 LNPDAVTWRILDKLHGNRGN 506
           L PD V +  L K   + G+
Sbjct: 561 LTPDVVNFGTLMKGFCDNGD 580



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 123/489 (25%), Positives = 227/489 (46%), Gaps = 43/489 (8%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           ++ EA  +F  M      P+V SY  +++        D A+KV+  MR  G++P+  T++
Sbjct: 91  KIQEAVDVFERMDFFNCEPSVQSYNAIMNILVEYRYFDQAHKVYMRMRDKGIVPDVYTFT 150

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
           + ++   RT     A  L+  +  +  E   +     A+  ++     E +  E   + E
Sbjct: 151 IRMKSFCRTSRPHAARRLLNNMPSQGCESSAV-----AYCTVIGGFYEENHRVEAHELFE 205

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
           +M       +  A   +I +LCR G    + R++  + KRG++P+L + N  + G C+  
Sbjct: 206 EMLGLGICPDIMAFNKLIHTLCRKGHVQESERLLNKVLKRGVSPNLFTVNIFIQGFCQRA 265

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
               A +LL+ G+  G  P   TY  L+ GLC    + +A                    
Sbjct: 266 MLNEAIRLLD-GVGRGLTPDVITYNTLICGLCKNFKVVEAEH------------------ 306

Query: 249 IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 308
            YLR                 M+    +PD  T N++I+G+CK+G ++ A ++L D    
Sbjct: 307 -YLRK----------------MVNEGYEPDGFTYNSIIDGYCKLGMMQNADQILRDGAFK 349

Query: 309 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE 368
            F  PD  T+ ++I GL   G I  A+N+  + M ++G  P +V  N +++GL +   + 
Sbjct: 350 GF-VPDESTYCSLINGLCQDGDIDRAINVFNEAM-EKGLKPNLVLCNTLVKGLSQQGLIL 407

Query: 369 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI 428
           +A ++ N M   G   D  TY +VI+GLC+   + +A     D +   ++ D + +  +I
Sbjct: 408 QALKLMNEMSENGCSPDIWTYNLVINGLCKIGCVSDADNLVIDAIAKGHLPDVFTFNTLI 467

Query: 429 KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLN 488
            G C+  K+  A+  +  + + GV+P+++ YN +++G CK     +     + M + G  
Sbjct: 468 DGYCKKLKLDNAIEIVDRMWNHGVSPDVITYNSILNGLCKAGKYEDVMGTFKLMMEKGCV 527

Query: 489 PDAVTWRIL 497
           P+ +T+ IL
Sbjct: 528 PNIITYNIL 536



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 109/454 (24%), Positives = 194/454 (42%), Gaps = 41/454 (9%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   +V EA      M + G+ P+  +Y ++I GYC+ G M  A ++  +    G +P+
Sbjct: 295 LCKNFKVVEAEHYLRKMVNEGYEPDGFTYNSIIDGYCKLGMMQNADQILRDGAFKGFVPD 354

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             TY  L+ G+ +  D++RA + +F   E M  E+ L  N      LV  L ++G + + 
Sbjct: 355 ESTYCSLINGLCQDGDIDRA-INVFN--EAM--EKGLKPNLVLCNTLVKGLSQQGLILQA 409

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            ++  +M +     + +    +I+ LC+ G    A  +V     +G  P + ++N+++ G
Sbjct: 410 LKLMNEMSENGCSPDIWTYNLVINGLCKIGCVSDADNLVIDAIAKGHLPDVFTFNTLIDG 469

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK      A ++++     G  P   TY  ++ GLC     E      + M+ K  V  
Sbjct: 470 YCKKLKLDNAIEIVDRMWNHGVSPDVITYNSILNGLCKAGKYEDVMGTFKLMMEKGCVPN 529

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               NI   + C  +   E LN++  M      PDV+   T++ GFC  G ++ A +   
Sbjct: 530 IITYNILTESFCKARKVEEALNLIEEMQNKGLTPDVVNFGTLMKGFCDNGDLDGAYQ--- 586

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
                                            L  +V  Q  +S  I TYN ++     
Sbjct: 587 ---------------------------------LFKRVDEQYKFSHTIATYNIMINAFAG 613

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
              +  A+++FN M   G   DS TY ++IDG C++  ++    F    +    I     
Sbjct: 614 KLNMNMAEKLFNKMCENGFSPDSYTYRVMIDGFCKTGNINSGYSFLLVKIEKGLIPSLTT 673

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIV 457
           +  ++  LC   ++HEAV  ++ +V  G+ P +V
Sbjct: 674 FGRVLNCLCLKRRVHEAVGIIHLMVHKGIVPEVV 707



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 94/354 (26%), Positives = 169/354 (47%), Gaps = 17/354 (4%)

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
           R G+   A  V   M      PS+ SYN+I++ L ++    +A+++       G +P  +
Sbjct: 88  RKGKIQEAVDVFERMDFFNCEPSVQSYNAIMNILVEYRYFDQAHKVYMRMRDKGIVPDVY 147

Query: 211 TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLI-------KNPTEL 263
           T+ + ++  C  S    AR++L  M S+        C     A C +        +  E 
Sbjct: 148 TFTIRMKSFCRTSRPHAARRLLNNMPSQG-------CESSAVAYCTVIGGFYEENHRVEA 200

Query: 264 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF 323
             +   ML     PD++  N +I+  C+ G ++E+ ++LN  V  +  +P+  T    I 
Sbjct: 201 HELFEEMLGLGICPDIMAFNKLIHTLCRKGHVQESERLLNK-VLKRGVSPNLFTVNIFIQ 259

Query: 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 383
           G      + EA+ LL  V   RG +P ++TYN ++ GL +  +V EA+     M+  G  
Sbjct: 260 GFCQRAMLNEAIRLLDGV--GRGLTPDVITYNTLICGLCKNFKVVEAEHYLRKMVNEGYE 317

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
            D  TY  +IDG C+   +  A +   D  +   + D   Y ++I GLC+ G I  A++ 
Sbjct: 318 PDGFTYNSIIDGYCKLGMMQNADQILRDGAFKGFVPDESTYCSLINGLCQDGDIDRAINV 377

Query: 444 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
             E ++ G+ PN+V  N ++ G  +  +  +A +++ EM +NG +PD  T+ ++
Sbjct: 378 FNEAMEKGLKPNLVLCNTLVKGLSQQGLILQALKLMNEMSENGCSPDIWTYNLV 431


>gi|15231863|ref|NP_190938.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174107|sp|Q9LFF1.1|PP281_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g53700, chloroplastic; AltName: Full=Protein MATERNAL
           EFFECT EMBRYO ARREST 40; Flags: Precursor
 gi|6729521|emb|CAB67677.1| putative protein [Arabidopsis thaliana]
 gi|15982931|gb|AAL09812.1| AT3g53700/F4P12_400 [Arabidopsis thaliana]
 gi|332645608|gb|AEE79129.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 754

 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 134/481 (27%), Positives = 239/481 (49%), Gaps = 11/481 (2%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M   G  P+V ++  LI   CR  ++  A  + ++M   G++P+  T++ +++G +   D
Sbjct: 180 MSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGD 239

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP-QGKSVNE 138
           ++ A     ++ E+M E    S +N +   +V   C+EG V +     ++M  Q     +
Sbjct: 240 LDGA----LRIREQMVEF-GCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPD 294

Query: 139 EFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLE 198
           ++    +++ LC++G    A  ++ VM + G  P + +YNS++ GLCK G    A ++L+
Sbjct: 295 QYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLD 354

Query: 199 EGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIK 258
           + I     P+  TY  L+  LC E+ +E+A ++ + + SK  +      N  ++ LCL +
Sbjct: 355 QMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTR 414

Query: 259 NPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM-VAGKFCAPDAVT 317
           N    + +   M    C+PD  T N +I+  C  G+++EAL +L  M ++G  CA   +T
Sbjct: 415 NHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSG--CARSVIT 472

Query: 318 FTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCM 377
           + T+I G     + +EA   ++  M   G S   VTYN ++ GL + RRVE+A ++ + M
Sbjct: 473 YNTLIDGFCKANKTREA-EEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQM 531

Query: 378 LGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKI 437
           +  G   D  TY  ++   C    + +A      +       D   Y  +I GLC++G++
Sbjct: 532 IMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRV 591

Query: 438 HEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM-RKNGLNPDAVTWRI 496
             A   L  +   G+      YN VI G  +     EA  + REM  +N   PDAV++RI
Sbjct: 592 EVASKLLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSYRI 651

Query: 497 L 497
           +
Sbjct: 652 V 652



 Score =  181 bits (460), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 138/508 (27%), Positives = 230/508 (45%), Gaps = 45/508 (8%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   ++  A  +  DM S G VP+  ++TT++ GY   G++D A ++ ++M   G   +
Sbjct: 199 LCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWS 258

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           +++ +V+V G  +   VE A        + M  ++    +   F  LV+ LC+ G+V   
Sbjct: 259 NVSVNVIVHGFCKEGRVEDA----LNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHA 314

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             I + M Q     + +    +I  LC+ G    A  V+  M  R  +P+ V+YN+++  
Sbjct: 315 IEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLIST 374

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LCK      A +L       G LP   T+  L++GLC   +   A ++ + M SK     
Sbjct: 375 LCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPD 434

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               N+ + +LC      E LN+L  M  + C   VIT NT+I+GFCK  +  EA ++ +
Sbjct: 435 EFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFD 494

Query: 304 DM-VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
           +M V G   + ++VT+ T+I GL    R+++A  L+ Q M   G  P   TYN++L    
Sbjct: 495 EMEVHG--VSRNSVTYNTLIDGLCKSRRVEDAAQLMDQ-MIMEGQKPDKYTYNSLLTHFC 551

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
           R   +++A ++   M   G   D  TY  +I GLC++ +++ A +    I         +
Sbjct: 552 RGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPH 611

Query: 423 VYAAMIKGLCRS-------------------------------------GKIHEAVHFLY 445
            Y  +I+GL R                                      G I EAV FL 
Sbjct: 612 AYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSYRIVFRGLCNGGGPIREAVDFLV 671

Query: 446 ELVDSGVTPNIVCYNVVIDGACKLSMKR 473
           EL++ G  P      ++ +G   LSM+ 
Sbjct: 672 ELLEKGFVPEFSSLYMLAEGLLTLSMEE 699



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 120/460 (26%), Positives = 219/460 (47%), Gaps = 42/460 (9%)

Query: 75  LRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGK 134
           LR++  + A + +F L  +   + + S   A +  ++  L R G  +++ +I EDM   +
Sbjct: 57  LRSQPDDSAALRLFNLASK---KPNFSPEPALYEEILLRLGRSGSFDDMKKILEDMKSSR 113

Query: 135 S---------VNEEFA-----------CGHMIDSLCRSGRNHGASRVVYV---------- 164
                     + E +A              MID        H  +R++ +          
Sbjct: 114 CEMGTSTFLILIESYAQFELQDEILSVVDWMIDEFGLKPDTHFYNRMLNLLVDGNSLKLV 173

Query: 165 ------MRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEG 218
                 M   G+ P + ++N ++  LC+      A  +LE+   +G +P E T+  +++G
Sbjct: 174 EISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQG 233

Query: 219 LCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFML-QTQCQP 277
              E DL+ A ++ + M+           N+ +   C      + LN +  M  Q    P
Sbjct: 234 YIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFP 293

Query: 278 DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNL 337
           D  T NT++NG CK G ++ A+++++ M+   +  PD  T+ ++I GL  +G ++EA+ +
Sbjct: 294 DQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGY-DPDVYTYNSVISGLCKLGEVKEAVEV 352

Query: 338 LYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLC 397
           L Q M  R  SP  VTYN ++  L +  +VEEA E+   +   G++ D  T+  +I GLC
Sbjct: 353 LDQ-MITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLC 411

Query: 398 ESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIV 457
            +     A   ++++       D + Y  +I  LC  GK+ EA++ L ++  SG   +++
Sbjct: 412 LTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVI 471

Query: 458 CYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            YN +IDG CK +  REA +I  EM  +G++ ++VT+  L
Sbjct: 472 TYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTL 511



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 119/451 (26%), Positives = 213/451 (47%), Gaps = 15/451 (3%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEM--RHCGVL 61
           LC    V  A ++   M   G+ P+V +Y ++I G C+ GE+  A +V D+M  R C   
Sbjct: 305 LCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCS-- 362

Query: 62  PNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVN 121
           PN++TY+ L+  + +   VE A  L      R+   + +  +   F +L+  LC      
Sbjct: 363 PNTVTYNTLISTLCKENQVEEATELA-----RVLTSKGILPDVCTFNSLIQGLCLTRNHR 417

Query: 122 EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
               + E+M       +EF    +IDSLC  G+   A  ++  M   G   S+++YN+++
Sbjct: 418 VAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLI 477

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
            G CK      A ++ +E    G   +  TY  L++GLC    +E A +++  M+ +   
Sbjct: 478 DGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQK 537

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
                 N  L   C   +  +  +++  M    C+PD++T  T+I+G CK GR+E A K+
Sbjct: 538 PDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKL 597

Query: 302 LNDM-VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           L  + + G    P A  +  +I GL    +  EA+NL  +++ Q    P  V+Y  V RG
Sbjct: 598 LRSIQMKGINLTPHA--YNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSYRIVFRG 655

Query: 361 LFR-LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
           L      + EA +    +L  G V + ++  ++ +GL   +  +   +  + ++  +   
Sbjct: 656 LCNGGGPIREAVDFLVELLEKGFVPEFSSLYMLAEGLLTLSMEETLVKLVNMVMQKARFS 715

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 450
           +  V  +M+KGL +  K  +A+  L  ++DS
Sbjct: 716 EEEV--SMVKGLLKIRKFQDALATLGGVLDS 744



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 102/417 (24%), Positives = 181/417 (43%), Gaps = 78/417 (18%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC L  V EA ++   M +R   PN V+Y TLI   C+  +++ A ++   +   G+LP+
Sbjct: 340 LCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPD 399

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             T++ L++G+  TR+   A  L  ++  +  E ++ + N      L+DSLC +G ++E 
Sbjct: 400 VCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNM-----LIDSLCSKGKLDEA 454

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             + + M              +ID  C++ +   A  +   M   G++ + V+YN+++ G
Sbjct: 455 LNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDG 514

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS---KKD 240
           LCK      A QL+++ I  G  P ++TY  L+   C   D++KA  ++Q M S   + D
Sbjct: 515 LCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPD 574

Query: 241 V-------------DRTRICNIYLRALCL--------IKNP-----------TELLNVLV 268
           +              R  + +  LR++ +          NP           TE +N+  
Sbjct: 575 IVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINLFR 634

Query: 269 FML-QTQCQPDVITLNTVINGFCKMG-RIEEALKVLNDMVAGKFC---------APDAVT 317
            ML Q +  PD ++   V  G C  G  I EA+  L +++   F          A   +T
Sbjct: 635 EMLEQNEAPPDAVSYRIVFRGLCNGGGPIREAVDFLVELLEKGFVPEFSSLYMLAEGLLT 694

Query: 318 FT-----------------------TIIFGLLNVGRIQEALNLLYQVM----PQRGY 347
            +                       +++ GLL + + Q+AL  L  V+    P+R Y
Sbjct: 695 LSMEETLVKLVNMVMQKARFSEEEVSMVKGLLKIRKFQDALATLGGVLDSRQPRRTY 751


>gi|218197600|gb|EEC80027.1| hypothetical protein OsI_21710 [Oryza sativa Indica Group]
          Length = 694

 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 139/510 (27%), Positives = 241/510 (47%), Gaps = 56/510 (10%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
            A +    M   G  PNV +Y  L+   C  G ++ A  V  +MR  G  PN++TY+ LV
Sbjct: 135 SARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLV 194

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP 131
               R  +++ A     ++   M+EE +   N   F ++V+ LC+ G +    ++ ++M 
Sbjct: 195 AAFCRAGELDGAE----RVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMV 250

Query: 132 QGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCM 191
           +     +  +   ++   C+ G  H +  V   M +RGL P +V++ S++H  CK G   
Sbjct: 251 REGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLE 310

Query: 192 RAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYL 251
           +A  L+ +  + G   +E T+  L++G C +  L+ A      +L+   V+  R C I  
Sbjct: 311 QAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDA------LLA---VEEMRKCGI-- 359

Query: 252 RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC 311
                                   QP V+  N +ING+CK+GR++ A +++ +M A K  
Sbjct: 360 ------------------------QPSVVCYNALINGYCKLGRMDLARELIREMEA-KRV 394

Query: 312 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK 371
            PD VT++TII G   VG +  A   L Q M ++G  P  +TY++++RGL   +R+ +A 
Sbjct: 395 KPDVVTYSTIISGYCKVGNLDSAFQ-LNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDAC 453

Query: 372 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 431
           E+F  ML +GV  D  TY  +IDG C+   +++A    D+++    + D   Y+ +I GL
Sbjct: 454 ELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGL 513

Query: 432 CRSGKIHEAVHFLYELVDSGVTPNIVCYN---------------VVIDGACKLSMKREAY 476
            +S +  EA   L++L      P+ + Y+                ++ G C   + +EA 
Sbjct: 514 SKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEAD 573

Query: 477 QILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           ++ + M       D   + IL   H   GN
Sbjct: 574 KVYQSMLDRNWKLDGSVYSILIHGHCRGGN 603



 Score =  198 bits (503), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 138/506 (27%), Positives = 245/506 (48%), Gaps = 58/506 (11%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCG-VLP 62
           LC   R+ EA  +  DM+  G  PN V+Y TL+  +CR GE+D A +V   MR  G   P
Sbjct: 162 LCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKP 221

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           N +T++ +V G+ +   +E A     K+++ M   E L+ +  ++  L+   C+ G ++E
Sbjct: 222 NLVTFNSMVNGLCKAGRMEGAR----KVFDEMV-REGLAPDVVSYNTLLSGYCKVGCLHE 276

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
              +  +M Q   V +      +I + C++G    A  +V  MR+RGL  + V++ +++ 
Sbjct: 277 SLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALID 336

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           G CK G    A   +EE  + G  PS   Y  L+ G C    ++ AR++++ M +K+   
Sbjct: 337 GFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKR--- 393

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
                                            +PDV+T +T+I+G+CK+G ++ A + L
Sbjct: 394 --------------------------------VKPDVVTYSTIISGYCKVGNLDSAFQ-L 420

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
           N  +  K   PDA+T++++I GL    R+ +A   L++ M Q G  P   TY  ++ G  
Sbjct: 421 NQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACE-LFENMLQLGVQPDEFTYTTLIDGHC 479

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
           +   VE+A  + + M+  GV+ D  TY+++I+GL +S +  EA R    +     + DN 
Sbjct: 480 KEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNI 539

Query: 423 VY---------------AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGAC 467
            Y                A++KG C  G + EA      ++D     +   Y+++I G C
Sbjct: 540 KYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHC 599

Query: 468 KLSMKREAYQILREMRKNGLNPDAVT 493
           +    R+A    ++M ++G +P++ +
Sbjct: 600 RGGNVRKALSFHKQMLRSGFSPNSTS 625



 Score =  192 bits (487), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 134/507 (26%), Positives = 238/507 (46%), Gaps = 64/507 (12%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   R+  A K+F +M   G  P+VVSY TL+ GYC+ G +  +  VF EM   G+
Sbjct: 230 VNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGL 289

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P+ +T++ L+    +  ++E+A  L+ ++ ER      L +N   F  L+D  C++G++
Sbjct: 290 VPDVVTFTSLIHATCKAGNLEQAVALVAQMRER-----GLRMNEVTFTALIDGFCKKGFL 344

Query: 121 NEVFRIAEDMPQGKSVNEEFAC-GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           ++     E+M +   +     C   +I+  C+ GR   A  ++  M  + + P +V+Y++
Sbjct: 345 DDALLAVEEMRKC-GIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYST 403

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           I+ G CK G    A+QL ++ ++ G LP   TY  L+ GLC E  L  A           
Sbjct: 404 IISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDA----------- 452

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                  C ++                   MLQ   QPD  T  T+I+G CK G +E+AL
Sbjct: 453 -------CELFEN-----------------MLQLGVQPDEFTYTTLIDGHCKEGNVEKAL 488

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
            + ++M+  K   PD VT++ +I GL    R +EA  LL+++  +    P  + Y+A++ 
Sbjct: 489 SLHDEMIR-KGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPV-PDNIKYDALML 546

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
              +                    A+  +   ++ G C    + EA + +  ++  +   
Sbjct: 547 CCSK--------------------AEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKL 586

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           D  VY+ +I G CR G + +A+ F  +++ SG +PN      ++ G  +  M  EA   +
Sbjct: 587 DGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEADNAI 646

Query: 480 REMRKNGLNPDAVTWRILDKLHGNRGN 506
           +++       DA   + L  L+   GN
Sbjct: 647 QDLLTCCPLADAEASKALIDLNRKEGN 673


>gi|359492658|ref|XP_002281859.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like [Vitis vinifera]
          Length = 939

 Score =  209 bits (533), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 144/538 (26%), Positives = 247/538 (45%), Gaps = 38/538 (7%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C   +V EA      M++ G  PN+V+Y +LI+GY   G+++ A  V   M   GV
Sbjct: 233 VNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGV 292

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             N +TY++L++G  +   ++ A     K+   M+EE  L  +  A+  L+D  CR G +
Sbjct: 293 SRNVVTYTLLIKGYCKQCKMDEAE----KVLRGMQEEAALVPDERAYGVLIDGYCRTGKI 348

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           ++  R+ ++M +       F C  +I+  C+ G  H A  V+  M    L P   SYN++
Sbjct: 349 DDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTL 408

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G C+ G    A+ L ++ +Q G  P+  TY  L++GLC     + A ++   M+ +  
Sbjct: 409 LDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGV 468

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                  +  L  L  ++N      +   +L        IT NT+I+G CKMG++ EA +
Sbjct: 469 APDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEE 528

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           + + M     C+PD +T+ T+I G      + +A   +   M +   SP I  YN+++ G
Sbjct: 529 IFDKM-KDLGCSPDGITYRTLIDGYCKASNVGQAFK-VKGAMEREPISPSIEMYNSLISG 586

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           LF+ RR+ E  ++   M   G+  +  TY  +IDG C+   LD+A   + ++       +
Sbjct: 587 LFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSAN 646

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSG----------------------------- 451
             + + M+ GL R G+I EA   + ++VD G                             
Sbjct: 647 IIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDHECFLKSDIRYAAIQKIADSLDESC 706

Query: 452 ---VTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
              + PN + YN+ I G CK     +A +    +   G  PD  T+  L   +   GN
Sbjct: 707 KTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGN 764



 Score =  207 bits (526), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 144/563 (25%), Positives = 257/563 (45%), Gaps = 79/563 (14%)

Query: 5   CGLSRVGEAHKLFFDMKSRGH-VPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           C   ++ EA K+   M+     VP+  +Y  LI GYCRTG++D A ++ DEM   G+  N
Sbjct: 307 CKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTN 366

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKL--WERMKEEEDLSVNNAAFANLVDSLCREGYVN 121
               + L+ G  +  ++  A  ++ ++  W       +L  ++ ++  L+D  CREG+ +
Sbjct: 367 LFICNSLINGYCKRGEIHEAEGVITRMVDW-------NLKPDSYSYNTLLDGYCREGHTS 419

Query: 122 EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTP--------- 172
           E F + + M Q            ++  LCR G    A ++ ++M KRG+ P         
Sbjct: 420 EAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLL 479

Query: 173 --------------------------SLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL 206
                                     S +++N+++ GLCK G  + A ++ ++    G  
Sbjct: 480 DGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCS 539

Query: 207 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 266
           P   TY+ L++G C  S++ +A KV   M  +       + N  +  L   +   E+ ++
Sbjct: 540 PDGITYRTLIDGYCKASNVGQAFKVKGAMEREPISPSIEMYNSLISGLFKSRRLVEVTDL 599

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
           L  M      P+++T   +I+G+CK G +++A     +M      A + +  +T++ GL 
Sbjct: 600 LTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSA-NIIICSTMVSGLY 658

Query: 327 NVGRIQEALNLLYQVMPQRGYSP--------------------------------GIVTY 354
            +GRI EA NLL Q M   G+ P                                  + Y
Sbjct: 659 RLGRIDEA-NLLMQKMVDHGFFPDHECFLKSDIRYAAIQKIADSLDESCKTFLLPNNIVY 717

Query: 355 NAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVW 414
           N  + GL +  +V++A+  F+ +   G V D+ TY  +I G   +  +DEA R  D+++ 
Sbjct: 718 NIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLR 777

Query: 415 PSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKRE 474
              + +   Y A+I GLC+S  +  A    ++L   G+ PN+V YN +IDG CK+     
Sbjct: 778 RGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDA 837

Query: 475 AYQILREMRKNGLNPDAVTWRIL 497
           A+++  +M + G++P  VT+  L
Sbjct: 838 AFKLKDKMIEEGISPSVVTYSAL 860



 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 135/530 (25%), Positives = 236/530 (44%), Gaps = 39/530 (7%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C      EA  L   M   G  P V++Y TL+ G CR G  D A +++  M   GV
Sbjct: 409 LDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGV 468

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ + YS L+ G+ +  + E A+ L   +  R       + +   F  ++  LC+ G +
Sbjct: 469 APDEVGYSTLLDGLFKMENFEGASTLWKDILAR-----GFTKSRITFNTMISGLCKMGKM 523

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E   I + M       +      +ID  C++     A +V   M +  ++PS+  YNS+
Sbjct: 524 VEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREPISPSIEMYNSL 583

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GL K    +    LL E    G  P+  TY  L++G C E  L+KA      M     
Sbjct: 584 ISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGL 643

Query: 241 VDRTRICNIYLRAL--------------------------CLIKNPTELLNV--LVFMLQ 272
                IC+  +  L                          C +K+      +  +   L 
Sbjct: 644 SANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDHECFLKSDIRYAAIQKIADSLD 703

Query: 273 TQCQ----PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNV 328
             C+    P+ I  N  I G CK G++++A +  + M++ K   PD  T+ T+I G    
Sbjct: 704 ESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFS-MLSLKGFVPDNFTYCTLIHGYSAA 762

Query: 329 GRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTT 388
           G + EA  L  +++ +RG  P IVTYNA++ GL +   V+ A+ +F+ +   G+  +  T
Sbjct: 763 GNVDEAFRLRDEML-RRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVT 821

Query: 389 YAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELV 448
           Y  +IDG C+   +D A +  D ++          Y+A+I GLC+ G I  ++  L +++
Sbjct: 822 YNTLIDGYCKIGNMDAAFKLKDKMIEEGISPSVVTYSALINGLCKHGDIERSMKLLNQMI 881

Query: 449 DSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILD 498
            +GV   ++ Y  ++ G  +    ++ +++   M    L+  A++ + +D
Sbjct: 882 KAGVDSKLIEYCTLVQGYIRSGEMQKIHKLYDMMHIRCLSTTAISHKQVD 931



 Score =  175 bits (443), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 105/382 (27%), Positives = 197/382 (51%), Gaps = 3/382 (0%)

Query: 109 NLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKR 168
           +L+++L + G  +    + + M +   V + F    M+++ C+ G+   A+  V  M   
Sbjct: 196 SLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENL 255

Query: 169 GLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKA 228
           G+ P++V+Y+S+++G    G    A  +L+   + G   +  TY +L++G C +  +++A
Sbjct: 256 GVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEA 315

Query: 229 RKVLQFMLSKKD-VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVIN 287
            KVL+ M  +   V   R   + +   C      + + +L  ML+   + ++   N++IN
Sbjct: 316 EKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLIN 375

Query: 288 GFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGY 347
           G+CK G I EA  V+  MV      PD+ ++ T++ G    G   EA NL  +++ Q G 
Sbjct: 376 GYCKRGEIHEAEGVITRMVDWNL-KPDSYSYNTLLDGYCREGHTSEAFNLCDKML-QEGI 433

Query: 348 SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKR 407
            P ++TYN +L+GL R+   ++A ++++ M+  GV  D   Y+ ++DGL +    + A  
Sbjct: 434 EPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGAST 493

Query: 408 FWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGAC 467
            W DI+          +  MI GLC+ GK+ EA     ++ D G +P+ + Y  +IDG C
Sbjct: 494 LWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYC 553

Query: 468 KLSMKREAYQILREMRKNGLNP 489
           K S   +A+++   M +  ++P
Sbjct: 554 KASNVGQAFKVKGAMEREPISP 575



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 130/231 (56%), Gaps = 3/231 (1%)

Query: 270 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG 329
           M++    PDV  ++ ++N FCK G+++EA   +  M       P+ VT+ ++I G +++G
Sbjct: 217 MIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKM-ENLGVEPNIVTYHSLINGYVSLG 275

Query: 330 RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG-IGVVADSTT 388
            ++ A  +L + M ++G S  +VTY  +++G  +  +++EA++V   M     +V D   
Sbjct: 276 DVEAAKGVL-KFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERA 334

Query: 389 YAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELV 448
           Y ++IDG C + ++D+A R  D+++      + ++  ++I G C+ G+IHEA   +  +V
Sbjct: 335 YGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMV 394

Query: 449 DSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
           D  + P+   YN ++DG C+     EA+ +  +M + G+ P  +T+  L K
Sbjct: 395 DWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLK 445



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 80/162 (49%), Gaps = 2/162 (1%)

Query: 338 LYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLC 397
           L  V  +  +SP +  ++ +L+        + A  VF+ M   G +    +   +++ L 
Sbjct: 145 LVGVYREFAFSPTV--FDMILKVYVEKGLTKNALYVFDNMGKCGRIPSLRSCNSLLNNLV 202

Query: 398 ESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIV 457
           ++ +   A   +  ++    + D ++ + M+   C+ GK+ EA  F+ ++ + GV PNIV
Sbjct: 203 KNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIV 262

Query: 458 CYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
            Y+ +I+G   L     A  +L+ M + G++ + VT+ +L K
Sbjct: 263 TYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIK 304


>gi|15221300|ref|NP_177597.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169839|sp|Q9CA58.1|PP120_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g74580
 gi|12324819|gb|AAG52381.1|AC011765_33 hypothetical protein; 77097-79388 [Arabidopsis thaliana]
 gi|332197491|gb|AEE35612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 763

 Score =  209 bits (533), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 139/490 (28%), Positives = 232/490 (47%), Gaps = 8/490 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC    V E  KL   +  RG +PN+ +Y   I G C+ GE+D A ++   +   G  P+
Sbjct: 226 LCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPD 285

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY+ L+ G+ +    + A V + K+       E L  ++  +  L+   C+ G V   
Sbjct: 286 VITYNNLIYGLCKNSKFQEAEVYLGKMV-----NEGLEPDSYTYNTLIAGYCKGGMVQLA 340

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            RI  D      V ++F    +ID LC  G  + A  +      +G+ P+++ YN+++ G
Sbjct: 341 ERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKG 400

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           L   G  + A QL  E  + G +P   T+ +LV GLC    +  A  +++ M+SK     
Sbjct: 401 LSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPD 460

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               NI +            L +L  ML     PDV T N+++NG CK  + E+ ++   
Sbjct: 461 IFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYK 520

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            MV  K CAP+  TF  ++  L    ++ EAL LL + M  +  +P  VT+  ++ G  +
Sbjct: 521 TMVE-KGCAPNLFTFNILLESLCRYRKLDEALGLLEE-MKNKSVNPDAVTFGTLIDGFCK 578

Query: 364 LRRVEEAKEVFNCMLGIGVVADST-TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
              ++ A  +F  M     V+ ST TY I+I    E   +  A++ + ++V      D Y
Sbjct: 579 NGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGY 638

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
            Y  M+ G C++G ++    FL E++++G  P++     VI+  C      EA  I+  M
Sbjct: 639 TYRLMVDGFCKTGNVNLGYKFLLEMMENGFIPSLTTLGRVINCLCVEDRVYEAAGIIHRM 698

Query: 483 RKNGLNPDAV 492
            + GL P+AV
Sbjct: 699 VQKGLVPEAV 708



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 127/473 (26%), Positives = 232/473 (49%), Gaps = 7/473 (1%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           +AHK++  M+ RG  P+V S+T  +  +C+T     A ++ + M   G   N + Y  +V
Sbjct: 129 QAHKVYMRMRDRGITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVV 188

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP 131
            G       E      ++L+ +M     +S+  + F  L+  LC++G V E  ++ + + 
Sbjct: 189 GGFYE----ENFKAEGYELFGKMLAS-GVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVI 243

Query: 132 QGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCM 191
           +   +   F     I  LC+ G   GA R+V  + ++G  P +++YN++++GLCK+    
Sbjct: 244 KRGVLPNLFTYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQ 303

Query: 192 RAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYL 251
            A   L + +  G  P  +TY  L+ G C    ++ A +++   +    V         +
Sbjct: 304 EAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLI 363

Query: 252 RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC 311
             LC        L +    L    +P+VI  NT+I G    G I EA ++ N+M + K  
Sbjct: 364 DGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEM-SEKGL 422

Query: 312 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK 371
            P+  TF  ++ GL  +G + +A  L+ +VM  +GY P I T+N ++ G     ++E A 
Sbjct: 423 IPEVQTFNILVNGLCKMGCVSDADGLV-KVMISKGYFPDIFTFNILIHGYSTQLKMENAL 481

Query: 372 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 431
           E+ + ML  GV  D  TY  +++GLC++++ ++    +  +V      + + +  +++ L
Sbjct: 482 EILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESL 541

Query: 432 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484
           CR  K+ EA+  L E+ +  V P+ V +  +IDG CK      AY + R+M +
Sbjct: 542 CRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEE 594



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 128/524 (24%), Positives = 229/524 (43%), Gaps = 77/524 (14%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           +V EA  +F  M      P V SY  ++     +G  D A+KV+  MR  G+ P+  +++
Sbjct: 91  KVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDRGITPDVYSFT 150

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
           + ++   +T     A     +L   M   +   +N  A+  +V     E +  E + +  
Sbjct: 151 IRMKSFCKTSRPHAA----LRLLNNM-SSQGCEMNVVAYCTVVGGFYEENFKAEGYELFG 205

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
            M              ++  LC+ G      +++  + KRG+ P+L +YN  + GLC+ G
Sbjct: 206 KMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRG 265

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
               A +++   I+ G  P   TY  L+ GLC  S  ++A                    
Sbjct: 266 ELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAE------------------- 306

Query: 249 IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 308
           +YL                  M+    +PD  T NT+I G+CK G ++ A +++ D V  
Sbjct: 307 VYLGK----------------MVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFN 350

Query: 309 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE 368
            F  PD  T+ ++I GL + G    AL L  + +  +G  P ++ YN +++GL     + 
Sbjct: 351 GF-VPDQFTYRSLIDGLCHEGETNRALALFNEAL-GKGIKPNVILYNTLIKGLSNQGMIL 408

Query: 369 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA---------KRFWDDI-VWPSNI 418
           EA ++ N M   G++ +  T+ I+++GLC+   + +A         K ++ DI  +   I
Sbjct: 409 EAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILI 468

Query: 419 H-------------------------DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVT 453
           H                         D Y Y +++ GLC++ K  + +     +V+ G  
Sbjct: 469 HGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCA 528

Query: 454 PNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           PN+  +N++++  C+     EA  +L EM+   +NPDAVT+  L
Sbjct: 529 PNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTL 572



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 105/419 (25%), Positives = 190/419 (45%), Gaps = 19/419 (4%)

Query: 88  FKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQ--GKSVNEEFACGHM 145
            +++  M++E       + + ++++ L   G    +  +  DM +  G  + E    G M
Sbjct: 24  LEMFNSMRKEVGFKHTLSTYRSVIEKLGYYGKFEAMEEVLVDMRENVGNHMLEGVYVGAM 83

Query: 146 IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY 205
             +  R G+   A  V   M      P++ SYN+I+  L   G   +A+++       G 
Sbjct: 84  -KNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDRGI 142

Query: 206 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN------ 259
            P  +++ + ++  C  S    A ++L  M S+        C + + A C +        
Sbjct: 143 TPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQG-------CEMNVVAYCTVVGGFYEEN 195

Query: 260 -PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTF 318
              E   +   ML +     + T N ++   CK G ++E  K+L D V  +   P+  T+
Sbjct: 196 FKAEGYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLL-DKVIKRGVLPNLFTY 254

Query: 319 TTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCML 378
              I GL   G +  A+ ++  ++ Q G  P ++TYN ++ GL +  + +EA+     M+
Sbjct: 255 NLFIQGLCQRGELDGAVRMVGCLIEQ-GPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMV 313

Query: 379 GIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIH 438
             G+  DS TY  +I G C+   +  A+R   D V+   + D + Y ++I GLC  G+ +
Sbjct: 314 NEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETN 373

Query: 439 EAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            A+    E +  G+ PN++ YN +I G     M  EA Q+  EM + GL P+  T+ IL
Sbjct: 374 RALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNIL 432



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 102/387 (26%), Positives = 176/387 (45%), Gaps = 4/387 (1%)

Query: 116 REGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLV 175
           R+G V E   + E M         F+   ++  L  SG    A +V   MR RG+TP + 
Sbjct: 88  RKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDRGITPDVY 147

Query: 176 SYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM 235
           S+   +   CK      A +LL      G   +   Y  +V G   E+   +  ++   M
Sbjct: 148 SFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEGYELFGKM 207

Query: 236 LSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 295
           L+          N  LR LC   +  E   +L  +++    P++ T N  I G C+ G +
Sbjct: 208 LASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGEL 267

Query: 296 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN 355
           + A++++  ++  +   PD +T+  +I+GL    + QEA   L + M   G  P   TYN
Sbjct: 268 DGAVRMVGCLIE-QGPKPDVITYNNLIYGLCKNSKFQEAEVYLGK-MVNEGLEPDSYTYN 325

Query: 356 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP 415
            ++ G  +   V+ A+ +    +  G V D  TY  +IDGLC   + + A   +++ +  
Sbjct: 326 TLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGK 385

Query: 416 SNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREA 475
               +  +Y  +IKGL   G I EA     E+ + G+ P +  +N++++G CK+    +A
Sbjct: 386 GIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDA 445

Query: 476 YQILREMRKNGLNPDAVTWRILDKLHG 502
             +++ M   G  PD  T+ IL  +HG
Sbjct: 446 DGLVKVMISKGYFPDIFTFNIL--IHG 470



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 87/353 (24%), Positives = 151/353 (42%), Gaps = 8/353 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC       A  LF +   +G  PNV+ Y TLI G    G +  A ++ +EM   G+
Sbjct: 363 IDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGL 422

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P   T+++LV G+ +   V  A+ L+  +  +    +  + N      L+     +  +
Sbjct: 423 IPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFN-----ILIHGYSTQLKM 477

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                I + M       + +    +++ LC++ +          M ++G  P+L ++N +
Sbjct: 478 ENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNIL 537

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +  LC++     A  LLEE       P   T+  L++G C   DL+ A  + + M     
Sbjct: 538 LESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYK 597

Query: 241 V-DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
           V   T   NI + A     N T    +   M+     PD  T   +++GFCK G +    
Sbjct: 598 VSSSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVNLGY 657

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIV 352
           K L +M+   F  P   T   +I  L    R+ EA  ++++ M Q+G  P  V
Sbjct: 658 KFLLEMMENGF-IPSLTTLGRVINCLCVEDRVYEAAGIIHR-MVQKGLVPEAV 708


>gi|357117807|ref|XP_003560653.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Brachypodium distachyon]
          Length = 692

 Score =  209 bits (533), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 144/497 (28%), Positives = 239/497 (48%), Gaps = 42/497 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    + EA  L   MK+ G  P+VV+Y +LI GY + GE++   K+  EMR CG 
Sbjct: 201 IDFLCKEGDLAEARALLARMKAIGCSPDVVTYNSLIDGYGKCGELEEVEKLVGEMRGCGC 260

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TY+ LV    +   +ERA    +  +  MK                    REG +
Sbjct: 261 RPDVVTYNALVNCFCKFGRMERA----YSYFAEMK--------------------REGVM 296

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
             V   +                  +D+ C++G    A ++   MR +G+ P+ V+Y  +
Sbjct: 297 ANVVTFST----------------FVDAFCKNGMVREAMKLFAQMRMKGMKPNEVTYTCL 340

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           V G CK G    A  L  E +Q G   +  TY VLV+GLC E  + +A  V + M     
Sbjct: 341 VDGTCKAGRLDDALVLTNEMVQQGVPLNVVTYTVLVDGLCKEGKVAEAEDVFRLMERAGI 400

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                +    +    + KN    L++L  M     + DV     +I G C + +++EA  
Sbjct: 401 RANELLYTTLIHGHFVYKNSERALSLLSEMKDKGMELDVSLYGALIWGLCNLQKLDEAKS 460

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +LN M       P+ V +T I+       +  EA+ LL ++M   G+ P IVTY A++ G
Sbjct: 461 LLNKMDECGL-KPNNVIYTNIMDACFKARKESEAIALLQKMM-DSGFRPNIVTYCALVDG 518

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L +   ++EA   FN M+ +G+  +   Y  ++DGLC++ +LD+A    D+++      D
Sbjct: 519 LCKAGSIDEAISHFNKMVDLGLEPNVQAYTALVDGLCKNGRLDKAVLLLDEMIDKGMSLD 578

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
           N V  +++ G  + G + +A     ++++SG+  ++  Y   + G C L+M +EA ++L 
Sbjct: 579 NVVCTSLMDGHLKQGNLQDAFALKAKMINSGLQLDLYGYTCFVWGFCNLNMIQEAREVLS 638

Query: 481 EMRKNGLNPDAVTWRIL 497
           EM +NG+ PDAV +  L
Sbjct: 639 EMIENGITPDAVVYNCL 655



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 132/487 (27%), Positives = 227/487 (46%), Gaps = 19/487 (3%)

Query: 23  RGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVER 82
           R  +P+VV   TL+      G +D A      +R   V PN+ T + ++  + R    ER
Sbjct: 124 RSALPSVVD--TLLSLLADRGLLDDAVLALARVRELRVPPNTRTCNHILLCLAR----ER 177

Query: 83  ANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFAC 142
           ++ L ++L+E++      + N   F  ++D LC+EG + E   +   M       +    
Sbjct: 178 SSELAWRLFEQLP-----APNVFTFNIMIDFLCKEGDLAEARALLARMKAIGCSPDVVTY 232

Query: 143 GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQ 202
             +ID   + G      ++V  MR  G  P +V+YN++V+  CK G   RAY    E  +
Sbjct: 233 NSLIDGYGKCGELEEVEKLVGEMRGCGCRPDVVTYNALVNCFCKFGRMERAYSYFAEMKR 292

Query: 203 FGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK--KDVDRTRICNIYLRALCLIKNP 260
            G + +  T+   V+  C    + +A K+   M  K  K  + T  C   +   C     
Sbjct: 293 EGVMANVVTFSTFVDAFCKNGMVREAMKLFAQMRMKGMKPNEVTYTC--LVDGTCKAGRL 350

Query: 261 TELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTT 320
            + L +   M+Q     +V+T   +++G CK G++ EA  V   M      A + + +TT
Sbjct: 351 DDALVLTNEMVQQGVPLNVVTYTVLVDGLCKEGKVAEAEDVFRLMERAGIRA-NELLYTT 409

Query: 321 IIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI 380
           +I G       + AL+LL + M  +G    +  Y A++ GL  L++++EAK + N M   
Sbjct: 410 LIHGHFVYKNSERALSLLSE-MKDKGMELDVSLYGALIWGLCNLQKLDEAKSLLNKMDEC 468

Query: 381 GVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV-YAAMIKGLCRSGKIHE 439
           G+  ++  Y  ++D   ++ +  EA      ++  S    N V Y A++ GLC++G I E
Sbjct: 469 GLKPNNVIYTNIMDACFKARKESEAIALLQKMM-DSGFRPNIVTYCALVDGLCKAGSIDE 527

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
           A+    ++VD G+ PN+  Y  ++DG CK     +A  +L EM   G++ D V    L  
Sbjct: 528 AISHFNKMVDLGLEPNVQAYTALVDGLCKNGRLDKAVLLLDEMIDKGMSLDNVVCTSLMD 587

Query: 500 LHGNRGN 506
            H  +GN
Sbjct: 588 GHLKQGN 594



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 95/365 (26%), Positives = 162/365 (44%), Gaps = 33/365 (9%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C    V EA KLF  M+ +G  PN V+YT L+ G C+ G +D A  + +EM   GV
Sbjct: 306 VDAFCKNGMVREAMKLFAQMRMKGMKPNEVTYTCLVDGTCKAGRLDDALVLTNEMVQQGV 365

Query: 61  LPNSLTYSVLVRGVLRTRDVE--------------RANVLMF-----------------K 89
             N +TY+VLV G+ +   V               RAN L++                  
Sbjct: 366 PLNVVTYTVLVDGLCKEGKVAEAEDVFRLMERAGIRANELLYTTLIHGHFVYKNSERALS 425

Query: 90  LWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSL 149
           L   MK ++ + ++ + +  L+  LC    ++E   +   M +           +++D+ 
Sbjct: 426 LLSEMK-DKGMELDVSLYGALIWGLCNLQKLDEAKSLLNKMDECGLKPNNVIYTNIMDAC 484

Query: 150 CRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSE 209
            ++ +   A  ++  M   G  P++V+Y ++V GLCK G    A     + +  G  P+ 
Sbjct: 485 FKARKESEAIALLQKMMDSGFRPNIVTYCALVDGLCKAGSIDEAISHFNKMVDLGLEPNV 544

Query: 210 HTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVF 269
             Y  LV+GLC    L+KA  +L  M+ K       +C   +       N  +   +   
Sbjct: 545 QAYTALVDGLCKNGRLDKAVLLLDEMIDKGMSLDNVVCTSLMDGHLKQGNLQDAFALKAK 604

Query: 270 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG 329
           M+ +  Q D+      + GFC +  I+EA +VL++M+      PDAV +  +I     +G
Sbjct: 605 MINSGLQLDLYGYTCFVWGFCNLNMIQEAREVLSEMIENGI-TPDAVVYNCLINKCQKLG 663

Query: 330 RIQEA 334
            ++EA
Sbjct: 664 NMEEA 668


>gi|296087509|emb|CBI34098.3| unnamed protein product [Vitis vinifera]
          Length = 718

 Score =  209 bits (533), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 136/502 (27%), Positives = 243/502 (48%), Gaps = 43/502 (8%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   ++ +A ++   M + G  PN  ++  LI GYCR   M  A ++ DEM    ++P+
Sbjct: 90  LCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPS 149

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           +++Y  ++ G+   +D+  AN    KL E+M     L  N   ++ L+     EG + E 
Sbjct: 150 AVSYGAMINGLCHCKDLSLAN----KLLEKMTFS-GLKPNVVVYSTLIMGYASEGRIEEA 204

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            R+ + M       + F    +I  L ++G+   AS  +  ++ RGL P  V++ + + G
Sbjct: 205 RRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILG 264

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
             K G    A +  +E +  G +P+   Y VL+ G     +L +A  + +          
Sbjct: 265 YSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFR---------- 314

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                 +L AL ++                   PDV T +  I+G  K GR++EALKV +
Sbjct: 315 ------HLHALGVL-------------------PDVQTCSAFIHGLLKNGRVQEALKVFS 349

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           ++   K   PD  T++++I G    G +++A  L +  M  +G +P I  YNA++ GL +
Sbjct: 350 ELKE-KGLVPDVFTYSSLISGFCKQGEVEKAFEL-HDEMCLKGIAPNIFIYNALVDGLCK 407

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
              ++ A+++F+ M   G+  DS TY+ +IDG C+S  + EA   + ++        ++V
Sbjct: 408 SGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFV 467

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y A++ G C+ G + +A++   E++  G    +  +N +IDG CK    +EA Q+ +EM 
Sbjct: 468 YNALVHGCCKEGDMEKAMNLFREMLQKGFATTL-SFNTLIDGYCKSCKIQEASQLFQEMI 526

Query: 484 KNGLNPDAVTWRILDKLHGNRG 505
              + PD VT+  +   H   G
Sbjct: 527 AKQIMPDHVTYTTVIDWHCKAG 548



 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 140/487 (28%), Positives = 237/487 (48%), Gaps = 17/487 (3%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M  +G VPN  +YT +  G CR   M+ A   F+EM+  G+ P+    S L+ G +R  D
Sbjct: 1   MGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGD 60

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDM-PQGKSVNE 138
           ++   VL  K    +     + +N   +  L+  LC+ G + +   I + M   G   N 
Sbjct: 61  IDE--VLRIK---DVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNS 115

Query: 139 EFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLE 198
              C  +I+  CR      A  ++  M KR L PS VSY ++++GLC       A +LLE
Sbjct: 116 RTFC-LLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLE 174

Query: 199 EGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIK 258
           +    G  P+   Y  L+ G   E  +E+AR++L  M S   V     C  Y   +  + 
Sbjct: 175 KMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGM-SCSGVAPDIFC--YNAIISCLS 231

Query: 259 NPTELLNVLVFMLQTQ---CQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA 315
              ++     ++L+ Q    +PD +T    I G+ K G++ EA K  ++M+      P+ 
Sbjct: 232 KAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGL-MPNN 290

Query: 316 VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN 375
             +T +I G    G + EAL++ ++ +   G  P + T +A + GL +  RV+EA +VF+
Sbjct: 291 PLYTVLINGHFKAGNLMEALSI-FRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFS 349

Query: 376 CMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG 435
            +   G+V D  TY+ +I G C+  ++++A    D++       + ++Y A++ GLC+SG
Sbjct: 350 ELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSG 409

Query: 436 KIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWR 495
            I  A      + + G+ P+ V Y+ +IDG CK     EA+ +  EM   G+ P +  + 
Sbjct: 410 DIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYN 469

Query: 496 ILDKLHG 502
            L  +HG
Sbjct: 470 AL--VHG 474



 Score =  199 bits (505), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 136/500 (27%), Positives = 246/500 (49%), Gaps = 31/500 (6%)

Query: 7   LSRVG---EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LS+ G   EA     +++ RG  P+ V++   I GY +TG+M  A K FDEM   G++PN
Sbjct: 230 LSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPN 289

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           +  Y+VL+ G  +  ++  A + +F+    +    D+   +A     +  L + G V E 
Sbjct: 290 NPLYTVLINGHFKAGNLMEA-LSIFRHLHALGVLPDVQTCSA----FIHGLLKNGRVQEA 344

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            ++  ++ +   V + F    +I   C+ G    A  +   M  +G+ P++  YN++V G
Sbjct: 345 LKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDG 404

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LCK G   RA +L +   + G  P   TY  +++G C   ++ +A  +   M SK     
Sbjct: 405 LCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPH 464

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
           + + N  +   C   +  + +N+   MLQ +     ++ NT+I+G+CK  +I+EA ++  
Sbjct: 465 SFVYNALVHGCCKEGDMEKAMNLFREMLQ-KGFATTLSFNTLIDGYCKSCKIQEASQLFQ 523

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           +M+A K   PD VT+TT+I      G+++EA NLL++ M +R         N ++  +F 
Sbjct: 524 EMIA-KQIMPDHVTYTTVIDWHCKAGKMEEA-NLLFKEMQER---------NLIVDTVFA 572

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
           L         F  M+  GV  D  TY +VI   C+ + L EA +  D++V    +    +
Sbjct: 573 L---------FEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTI 623

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           +  +I  LC+   + EA   L E+ + G+ P++   + ++    +     EA ++   ++
Sbjct: 624 HDLLITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFEGVK 683

Query: 484 KNGLNPDAVTWRILDKLHGN 503
             GL PD  T  ++D ++GN
Sbjct: 684 SLGLVPDTTT--LIDLVNGN 701



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 109/471 (23%), Positives = 209/471 (44%), Gaps = 61/471 (12%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           EA  +F  + + G +P+V + +  IHG  + G +  A KVF E++  G++P+  TYS L+
Sbjct: 308 EALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLI 367

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP 131
            G  +  +VE+A    F+L + M  +  ++ N   +  LVD LC+ G +    ++ + MP
Sbjct: 368 SGFCKQGEVEKA----FELHDEMCLK-GIAPNIFIYNALVDGLCKSGDIQRARKLFDGMP 422

Query: 132 QGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCM 191
           +     +      MID  C+S     A  + + M  +G+ P    YN++VHG CK G   
Sbjct: 423 EKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDME 482

Query: 192 RAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYL 251
           +A  L  E +Q G+  +  ++  L++G C    +++A ++ Q M++K             
Sbjct: 483 KAMNLFREMLQKGF-ATTLSFNTLIDGYCKSCKIQEASQLFQEMIAK------------- 528

Query: 252 RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC 311
                                 Q  PD +T  TVI+  CK G++EEA  +  +M      
Sbjct: 529 ----------------------QIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNL- 565

Query: 312 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK 371
                              I + +  L++ M  +G  P  VTY  V+    +   + EA 
Sbjct: 566 -------------------IVDTVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAF 606

Query: 372 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 431
           ++ + ++G G++   T + ++I  LC+   L EA +  D++            + +++  
Sbjct: 607 KLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSF 666

Query: 432 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
             +GK+ EA      +   G+ P+      +++G    +   +A  +++++
Sbjct: 667 HEAGKMDEATRVFEGVKSLGLVPDTTTLIDLVNGNLNDTDSEDARNLIKQL 717



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 90/342 (26%), Positives = 153/342 (44%), Gaps = 37/342 (10%)

Query: 165 MRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESD 224
           M ++GL P+  +Y  I  GLC+      A    EE  + G  P  +    L++G   E D
Sbjct: 1   MGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGD 60

Query: 225 LEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNT 284
           +++  ++   M+S         C I +                          ++IT N 
Sbjct: 61  IDEVLRIKDVMVS---------CGIPI--------------------------NLITYNV 85

Query: 285 VINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ 344
           +I+G CK G++E+A ++L  M+    C P++ TF  +I G      +  AL LL + M +
Sbjct: 86  LIHGLCKFGKMEKAAEILKGMITLG-CKPNSRTFCLLIEGYCREHNMGRALELLDE-MEK 143

Query: 345 RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 404
           R   P  V+Y A++ GL   + +  A ++   M   G+  +   Y+ +I G     +++E
Sbjct: 144 RNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEE 203

Query: 405 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
           A+R  D +       D + Y A+I  L ++GK+ EA  +L E+   G+ P+ V +   I 
Sbjct: 204 ARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFIL 263

Query: 465 GACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           G  K     EA +   EM  +GL P+   + +L   H   GN
Sbjct: 264 GYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGN 305



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 87/342 (25%), Positives = 165/342 (48%), Gaps = 25/342 (7%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    +  A KLF  M  +G  P+ V+Y+T+I GYC++  +  A+ +F EM   GV
Sbjct: 402 VDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGV 461

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+S  Y+ LV G  +  D+E+A  L  ++ ++            +F  L+D  C+   +
Sbjct: 462 QPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKG------FATTLSFNTLIDGYCKSCKI 515

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E  ++ ++M   + + +      +ID  C++G+   A+ +   M++R L    V     
Sbjct: 516 QEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTV----- 570

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
                        + L E+ +  G  P E TY +++   C E +L +A K+   ++ K  
Sbjct: 571 -------------FALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGM 617

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           + +  I ++ + ALC  ++ TE   +L  M +   +P +   +T++  F + G+++EA +
Sbjct: 618 LTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATR 677

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVM 342
           V  + V      PD  T   ++ G LN    ++A NL+ Q++
Sbjct: 678 VF-EGVKSLGLVPDTTTLIDLVNGNLNDTDSEDARNLIKQLV 718


>gi|356518398|ref|XP_003527866.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 603

 Score =  209 bits (533), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 124/401 (30%), Positives = 207/401 (51%), Gaps = 8/401 (1%)

Query: 114 LCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPS 173
           L R G + E  +  E M     + +  AC  +I   CRSG+   A+R++ ++   G  P 
Sbjct: 117 LVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTRKATRIMEILENSGAVPD 176

Query: 174 LVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQ 233
           +++YN ++ G CK G   +A Q+LE   +    P   TY  ++  LC    L++A +VL 
Sbjct: 177 VITYNVLIGGYCKSGEIDKALQVLE---RMSVAPDVVTYNTILRSLCDSGKLKEAMEVLD 233

Query: 234 FMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMG 293
             + ++         I + A C      + + +L  M +  C+PDV+T N +ING CK G
Sbjct: 234 RQMQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEG 293

Query: 294 RIEEALKVLNDM-VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIV 352
           R++EA+K LN+M + G  C P+ +T   I+  + + GR  +A  LL  ++ ++G SP +V
Sbjct: 294 RLDEAIKFLNNMPLYG--CQPNVITHNIILRSMCSTGRWMDAERLLADML-RKGCSPSVV 350

Query: 353 TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI 412
           T+N ++  L R R +  A +V   M   G + +S +Y  ++ G C+  ++D A  + + +
Sbjct: 351 TFNILINFLCRKRLLGRAIDVLEKMPKHGCMPNSLSYNPLLHGFCQEKKMDRAIEYLEIM 410

Query: 413 VWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMK 472
           V      D   Y  ++  LC+ GK   AV  L +L   G +P ++ YN VIDG  K+   
Sbjct: 411 VSRGCYPDIVTYNTLLTALCKDGKADAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKT 470

Query: 473 REAYQILREMRKNGLNPDAVTWRILDKLHGNRGN-DFGLRI 512
             A ++L EMR+ GL PD +T+  L +  G  G  D  ++I
Sbjct: 471 EYAAELLEEMRRKGLKPDIITYSTLLRGLGCEGKVDEAIKI 511



 Score =  209 bits (532), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 124/454 (27%), Positives = 237/454 (52%), Gaps = 10/454 (2%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           E  K    M  +G +P+V++ T+LI G+CR+G+   A ++ + + + G +P+ +TY+VL+
Sbjct: 125 EGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTRKATRIMEILENSGAVPDVITYNVLI 184

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP 131
            G  ++ ++++A     ++ ERM    D+      +  ++ SLC  G + E   + +   
Sbjct: 185 GGYCKSGEIDKA----LQVLERMSVAPDV----VTYNTILRSLCDSGKLKEAMEVLDRQM 236

Query: 132 QGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCM 191
           Q +   +      +I++ C       A +++  MRK+G  P +V+YN +++G+CK G   
Sbjct: 237 QRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLD 296

Query: 192 RAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYL 251
            A + L     +G  P+  T+ +++  +C       A ++L  ML K         NI +
Sbjct: 297 EAIKFLNNMPLYGCQPNVITHNIILRSMCSTGRWMDAERLLADMLRKGCSPSVVTFNILI 356

Query: 252 RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC 311
             LC  +     ++VL  M +  C P+ ++ N +++GFC+  +++ A++ L  MV+ + C
Sbjct: 357 NFLCRKRLLGRAIDVLEKMPKHGCMPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVS-RGC 415

Query: 312 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK 371
            PD VT+ T++  L   G+   A+ +L Q +  +G SP ++TYN V+ GL ++ + E A 
Sbjct: 416 YPDIVTYNTLLTALCKDGKADAAVEILNQ-LSSKGCSPVLITYNTVIDGLTKVGKTEYAA 474

Query: 372 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 431
           E+   M   G+  D  TY+ ++ GL    ++DEA + + D+   S       Y A++ GL
Sbjct: 475 ELLEEMRRKGLKPDIITYSTLLRGLGCEGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGL 534

Query: 432 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDG 465
           C++ +   A+ FL  +V+ G  P    Y ++I+G
Sbjct: 535 CKAQQTSRAIDFLAYMVEKGCKPTKATYTILIEG 568



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 116/428 (27%), Positives = 224/428 (52%), Gaps = 10/428 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C   +  +A ++   +++ G VP+V++Y  LI GYC++GE+D A +V + M    V P+
Sbjct: 152 FCRSGKTRKATRIMEILENSGAVPDVITYNVLIGGYCKSGEIDKALQVLERM---SVAPD 208

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY+ ++R +  +  ++ A  ++ +  +R     +   +   +  L+++ C +  V + 
Sbjct: 209 VVTYNTILRSLCDSGKLKEAMEVLDRQMQR-----ECYPDVITYTILIEATCNDSGVGQA 263

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            ++ ++M +     +      +I+ +C+ GR   A + +  M   G  P+++++N I+  
Sbjct: 264 MKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPLYGCQPNVITHNIILRS 323

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           +C  G  M A +LL + ++ G  PS  T+ +L+  LC +  L +A  VL+ M     +  
Sbjct: 324 MCSTGRWMDAERLLADMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCMPN 383

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
           +   N  L   C  K     +  L  M+   C PD++T NT++   CK G+ + A+++LN
Sbjct: 384 SLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKADAAVEILN 443

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            + + K C+P  +T+ T+I GL  VG+ + A  LL + M ++G  P I+TY+ +LRGL  
Sbjct: 444 QL-SSKGCSPVLITYNTVIDGLTKVGKTEYAAELLEE-MRRKGLKPDIITYSTLLRGLGC 501

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
             +V+EA ++F+ M G+ +   + TY  ++ GLC++ Q   A  F   +V          
Sbjct: 502 EGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTKAT 561

Query: 424 YAAMIKGL 431
           Y  +I+G+
Sbjct: 562 YTILIEGI 569



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 95/364 (26%), Positives = 166/364 (45%), Gaps = 48/364 (13%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C  S VG+A KL  +M+ +G  P+VV+Y  LI+G C+ G +D A K  + M   G 
Sbjct: 251 IEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPLYGC 310

Query: 61  LPNSLTYSVLVRGVLRT---RDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCRE 117
            PN +T+++++R +  T    D ER    M +        +  S +   F  L++ LCR+
Sbjct: 311 QPNVITHNIILRSMCSTGRWMDAERLLADMLR--------KGCSPSVVTFNILINFLCRK 362

Query: 118 GYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
             +     + E MP+   +    +   ++   C+  +   A   + +M  RG  P +V+Y
Sbjct: 363 RLLGRAIDVLEKMPKHGCMPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTY 422

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
           N+++  LCK G    A ++L +    G  P   TY  +++GL      E A ++L+ M  
Sbjct: 423 NTLLTALCKDGKADAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAAELLEEMRR 482

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
           K                                     +PD+IT +T++ G    G+++E
Sbjct: 483 KG-----------------------------------LKPDIITYSTLLRGLGCEGKVDE 507

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           A+K+ +DM  G    P AVT+  I+ GL    +   A++ L   M ++G  P   TY  +
Sbjct: 508 AIKIFHDM-EGLSIKPSAVTYNAIMLGLCKAQQTSRAIDFL-AYMVEKGCKPTKATYTIL 565

Query: 358 LRGL 361
           + G+
Sbjct: 566 IEGI 569


>gi|297605196|ref|NP_001056837.2| Os06g0152500 [Oryza sativa Japonica Group]
 gi|255676726|dbj|BAF18751.2| Os06g0152500 [Oryza sativa Japonica Group]
          Length = 717

 Score =  209 bits (533), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 139/510 (27%), Positives = 241/510 (47%), Gaps = 56/510 (10%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
            A +    M   G  PNV +Y  L+   C  G ++ A  V  +MR  G  PN++TY+ LV
Sbjct: 135 SARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLV 194

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP 131
               R  +++ A     ++   M+EE +   N   F ++V+ LC+ G +    ++ ++M 
Sbjct: 195 AAFCRAGELDGAE----RVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMV 250

Query: 132 QGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCM 191
           +     +  +   ++   C+ G  H +  V   M +RGL P +V++ S++H  CK G   
Sbjct: 251 REGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLE 310

Query: 192 RAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYL 251
           +A  L+ +  + G   +E T+  L++G C +  L+ A      +L+   V+  R C I  
Sbjct: 311 QAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDA------LLA---VEEMRKCGI-- 359

Query: 252 RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC 311
                                   QP V+  N +ING+CK+GR++ A +++ +M A K  
Sbjct: 360 ------------------------QPSVVCYNALINGYCKLGRMDLARELIREMEA-KRV 394

Query: 312 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK 371
            PD VT++TII G   VG +  A   L Q M ++G  P  +TY++++RGL   +R+ +A 
Sbjct: 395 KPDVVTYSTIISGYCKVGNLDSAFQ-LNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDAC 453

Query: 372 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 431
           E+F  ML +GV  D  TY  +IDG C+   +++A    D+++    + D   Y+ +I GL
Sbjct: 454 ELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGL 513

Query: 432 CRSGKIHEAVHFLYELVDSGVTPNIVCYN---------------VVIDGACKLSMKREAY 476
            +S +  EA   L++L      P+ + Y+                ++ G C   + +EA 
Sbjct: 514 SKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEAD 573

Query: 477 QILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           ++ + M       D   + IL   H   GN
Sbjct: 574 KVYQSMLDRNWKLDGSVYSILIHGHCRGGN 603



 Score =  198 bits (503), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 138/506 (27%), Positives = 245/506 (48%), Gaps = 58/506 (11%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCG-VLP 62
           LC   R+ EA  +  DM+  G  PN V+Y TL+  +CR GE+D A +V   MR  G   P
Sbjct: 162 LCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKP 221

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           N +T++ +V G+ +   +E A     K+++ M   E L+ +  ++  L+   C+ G ++E
Sbjct: 222 NLVTFNSMVNGLCKAGRMEGAR----KVFDEMV-REGLAPDVVSYNTLLSGYCKVGCLHE 276

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
              +  +M Q   V +      +I + C++G    A  +V  MR+RGL  + V++ +++ 
Sbjct: 277 SLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALID 336

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           G CK G    A   +EE  + G  PS   Y  L+ G C    ++ AR++++ M +K+   
Sbjct: 337 GFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKR--- 393

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
                                            +PDV+T +T+I+G+CK+G ++ A + L
Sbjct: 394 --------------------------------VKPDVVTYSTIISGYCKVGNLDSAFQ-L 420

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
           N  +  K   PDA+T++++I GL    R+ +A   L++ M Q G  P   TY  ++ G  
Sbjct: 421 NQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACE-LFENMLQLGVQPDEFTYTTLIDGHC 479

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
           +   VE+A  + + M+  GV+ D  TY+++I+GL +S +  EA R    +     + DN 
Sbjct: 480 KEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNI 539

Query: 423 VY---------------AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGAC 467
            Y                A++KG C  G + EA      ++D     +   Y+++I G C
Sbjct: 540 KYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHC 599

Query: 468 KLSMKREAYQILREMRKNGLNPDAVT 493
           +    R+A    ++M ++G +P++ +
Sbjct: 600 RGGNVRKALSFHKQMLRSGFSPNSTS 625



 Score =  192 bits (487), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 134/509 (26%), Positives = 239/509 (46%), Gaps = 64/509 (12%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   R+  A K+F +M   G  P+VVSY TL+ GYC+ G +  +  VF EM   G+
Sbjct: 230 VNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGL 289

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P+ +T++ L+    +  ++E+A  L+ ++ ER      L +N   F  L+D  C++G++
Sbjct: 290 VPDVVTFTSLIHATCKAGNLEQAVALVAQMRER-----GLRMNEVTFTALIDGFCKKGFL 344

Query: 121 NEVFRIAEDMPQGKSVNEEFAC-GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           ++     E+M +   +     C   +I+  C+ GR   A  ++  M  + + P +V+Y++
Sbjct: 345 DDALLAVEEMRKC-GIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYST 403

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           I+ G CK G    A+QL ++ ++ G LP   TY  L+ GLC E  L  A           
Sbjct: 404 IISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDA----------- 452

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                  C ++                   MLQ   QPD  T  T+I+G CK G +E+AL
Sbjct: 453 -------CELFEN-----------------MLQLGVQPDEFTYTTLIDGHCKEGNVEKAL 488

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
            + ++M+  K   PD VT++ +I GL    R +EA  LL+++  +    P  + Y+A++ 
Sbjct: 489 SLHDEMIR-KGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPV-PDNIKYDALML 546

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
              +                    A+  +   ++ G C    + EA + +  ++  +   
Sbjct: 547 CCSK--------------------AEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKL 586

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           D  VY+ +I G CR G + +A+ F  +++ SG +PN      ++ G  +  M  EA   +
Sbjct: 587 DGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEADNAI 646

Query: 480 REMRKNGLNPDAVTWRILDKLHGNRGNDF 508
           +++       DA   + L  L+   G D+
Sbjct: 647 QDLLTCCPLADAEASKALIDLNRKEGMDY 675


>gi|302770783|ref|XP_002968810.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
 gi|300163315|gb|EFJ29926.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
          Length = 545

 Score =  209 bits (532), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 123/406 (30%), Positives = 205/406 (50%), Gaps = 7/406 (1%)

Query: 101 SVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASR 160
           S +  AF  +++ LCRE  ++E F + E   +     +       ID LC++ R   A +
Sbjct: 4   SPDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQ 63

Query: 161 VVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLC 220
           ++  M ++   P+ V+Y ++V GL K G    A  +LE+ ++ G  P+  TY V+++GL 
Sbjct: 64  LLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDGLS 123

Query: 221 GESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVL----VFMLQTQCQ 276
               +E+AR++   ML         +    ++ LC    P E   +              
Sbjct: 124 KAGRVEEARRIFVDMLGNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHATAV 183

Query: 277 PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALN 336
           PDV+T  ++I+G CK GRI EA +V +D    +   PDAVT+T+II GL  +GR++E   
Sbjct: 184 PDVVTYTSLIDGLCKAGRILEARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCE 243

Query: 337 LLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 396
             ++ M  RGY P  VTY A++ G  + + + +A  V+  ML  G V  + TY I++DGL
Sbjct: 244 RFHE-MRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGL 302

Query: 397 CESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNI 456
           C++ ++ EA   +  +     +     Y+A++ G C  G +  AV     ++D G  PN+
Sbjct: 303 CKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNL 362

Query: 457 VCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
           V YN++I G C+     +AY    ++ +  L PD  T+     LHG
Sbjct: 363 VSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNAF--LHG 406



 Score =  198 bits (503), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 140/499 (28%), Positives = 235/499 (47%), Gaps = 22/499 (4%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   RV +A +L   M  +  +P  V+YT L+ G  + G +D A  V ++M   G 
Sbjct: 49  IDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGN 108

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P   TY+V++ G+ +   VE A  +   +            +   +  L+  LC+ G  
Sbjct: 109 SPTLKTYTVVIDGLSKAGRVEEARRIFVDML-----GNGCRPDAFVYTALIKGLCKSGKP 163

Query: 121 NEVFRIAEDMPQGK----SVNEEFACGHMIDSLCRSGRNHGASRVV-YVMRKRGLTPSLV 175
            E + + ++    K    +V +      +ID LC++GR   A +V      +RG  P  V
Sbjct: 164 EEAYALYKEANARKHHATAVPDVVTYTSLIDGLCKAGRILEARQVFDDEAVERGFIPDAV 223

Query: 176 SYNSIVHGLCKHG----GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKV 231
           +Y SI+ GLCK G    GC R +++       GY P   TY  L++G      + KA +V
Sbjct: 224 TYTSIIDGLCKLGRVEEGCERFHEMRNR----GYEPDAVTYAALIDGFMKAKMIPKAHRV 279

Query: 232 LQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK 291
            + ML    V  T   NI L  LC      E     + M +  C   V+T + +++GFC 
Sbjct: 280 YRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCS 339

Query: 292 MGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGI 351
            G +  A+++   M+  + C P+ V++  II GL   G++ +A    ++ + QR   P +
Sbjct: 340 EGNVSAAVELFRRML-DRGCEPNLVSYNIIIRGLCRAGKLAKAY-FYFEKLLQRRLCPDV 397

Query: 352 VTYNAVLRGLF-RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD 410
            T+NA L GL  RL  V +  E+F  M+  G   +  +Y+I++DG+C +  L+ A   + 
Sbjct: 398 YTFNAFLHGLCQRLDTVSDGVELFESMVSQGTSPNLHSYSILMDGICRAGGLEVALEIFR 457

Query: 411 DIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLS 470
           ++V      D  V+  +I+ LC +G++ EA+    EL +    P+   Y  ++DG  +  
Sbjct: 458 EMVSRGVAPDVVVFNTLIRWLCIAGRVDEALEVFREL-ERRSAPDAWSYWSLLDGLSRCE 516

Query: 471 MKREAYQILREMRKNGLNP 489
              EA  +   M+  G  P
Sbjct: 517 RMEEARLLSFHMKLQGCAP 535



 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 137/481 (28%), Positives = 228/481 (47%), Gaps = 21/481 (4%)

Query: 27  PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVL 86
           P++V++T +I+G CR   +D A+ V +     G  P+ +TY+V + G+ +   V+ A   
Sbjct: 5   PDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDA--- 61

Query: 87  MFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMI 146
            F+L ++M E++ L      +  LVD L + G ++E   + E M +  +         +I
Sbjct: 62  -FQLLKKMDEKKCLP-TTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVI 119

Query: 147 DSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY- 205
           D L ++GR   A R+   M   G  P    Y +++ GLCK G    AY L +E     + 
Sbjct: 120 DGLSKAGRVEEARRIFVDMLGNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANARKHH 179

Query: 206 ---LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIY-----LRALCLI 257
              +P   TY  L++GLC    + +AR+V       + V+R  I +       +  LC +
Sbjct: 180 ATAVPDVVTYTSLIDGLCKAGRILEARQVFD----DEAVERGFIPDAVTYTSIIDGLCKL 235

Query: 258 KNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVT 317
               E       M     +PD +T   +I+GF K   I +A +V   M+         VT
Sbjct: 236 GRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVV-STVT 294

Query: 318 FTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCM 377
           +  I+ GL   GR+ EA    +  M +RG    +VTY+A++ G      V  A E+F  M
Sbjct: 295 YNIILDGLCKAGRVAEAYA-TFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRM 353

Query: 378 LGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLC-RSGK 436
           L  G   +  +Y I+I GLC + +L +A  +++ ++      D Y + A + GLC R   
Sbjct: 354 LDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNAFLHGLCQRLDT 413

Query: 437 IHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRI 496
           + + V     +V  G +PN+  Y++++DG C+      A +I REM   G+ PD V +  
Sbjct: 414 VSDGVELFESMVSQGTSPNLHSYSILMDGICRAGGLEVALEIFREMVSRGVAPDVVVFNT 473

Query: 497 L 497
           L
Sbjct: 474 L 474



 Score =  194 bits (494), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 136/511 (26%), Positives = 248/511 (48%), Gaps = 23/511 (4%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   R+ EA  +       G  P+ V+Y   I G C+   +D A+++  +M     
Sbjct: 14  INGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQLLKKMDEKKC 73

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           LP ++TY+ LV G+L+   ++ A  ++    E+M E+ + S     +  ++D L + G V
Sbjct: 74  LPTTVTYTALVDGLLKAGRLDEAMAVL----EQMVEKGN-SPTLKTYTVVIDGLSKAGRV 128

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKR----GLTPSLVS 176
            E  RI  DM       + F    +I  LC+SG+   A  +      R       P +V+
Sbjct: 129 EEARRIFVDMLGNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHATAVPDVVT 188

Query: 177 YNSIVHGLCKHGGCMRAYQLLE-EGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM 235
           Y S++ GLCK G  + A Q+ + E ++ G++P   TY  +++GLC    +E+  +    M
Sbjct: 189 YTSLIDGLCKAGRILEARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEM 248

Query: 236 LSK----KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK 291
            ++      V    + + +++A  + K       V   MLQ+      +T N +++G CK
Sbjct: 249 RNRGYEPDAVTYAALIDGFMKAKMIPKAH----RVYRQMLQSGTVVSTVTYNIILDGLCK 304

Query: 292 MGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGI 351
            GR+ EA      M   + C    VT++ ++ G  + G +  A+ L ++ M  RG  P +
Sbjct: 305 AGRVAEAYATFLAM-EERGCVATVVTYSALMDGFCSEGNVSAAVEL-FRRMLDRGCEPNL 362

Query: 352 VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCES-NQLDEAKRFWD 410
           V+YN ++RGL R  ++ +A   F  +L   +  D  T+   + GLC+  + + +    ++
Sbjct: 363 VSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNAFLHGLCQRLDTVSDGVELFE 422

Query: 411 DIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLS 470
            +V      + + Y+ ++ G+CR+G +  A+    E+V  GV P++V +N +I   C   
Sbjct: 423 SMVSQGTSPNLHSYSILMDGICRAGGLEVALEIFREMVSRGVAPDVVVFNTLIRWLCIAG 482

Query: 471 MKREAYQILREMRKNGLNPDAVT-WRILDKL 500
              EA ++ RE+ +    PDA + W +LD L
Sbjct: 483 RVDEALEVFRELERRS-APDAWSYWSLLDGL 512



 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 101/340 (29%), Positives = 174/340 (51%), Gaps = 5/340 (1%)

Query: 171 TPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARK 230
           +P +V++  +++GLC+      A+ +LE  ++ G  P   TY V ++GLC    ++ A +
Sbjct: 4   SPDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQ 63

Query: 231 VLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFC 290
           +L+ M  KK +  T      +  L       E + VL  M++    P + T   VI+G  
Sbjct: 64  LLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDGLS 123

Query: 291 KMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYS-- 348
           K GR+EEA ++  DM+ G  C PDA  +T +I GL   G+ +EA  L  +   ++ ++  
Sbjct: 124 KAGRVEEARRIFVDML-GNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHATA 182

Query: 349 -PGIVTYNAVLRGLFRLRRVEEAKEVFNC-MLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
            P +VTY +++ GL +  R+ EA++VF+   +  G + D+ TY  +IDGLC+  +++E  
Sbjct: 183 VPDVVTYTSLIDGLCKAGRILEARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVEEGC 242

Query: 407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466
             + ++       D   YAA+I G  ++  I +A     +++ SG   + V YN+++DG 
Sbjct: 243 ERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGL 302

Query: 467 CKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           CK     EAY     M + G     VT+  L     + GN
Sbjct: 303 CKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGN 342



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 93/262 (35%), Positives = 130/262 (49%), Gaps = 40/262 (15%)

Query: 275 CQPDVITLNTVINGFCKMGRIEEALKVLNDMV-AG------------------------- 308
           C PD++    VING C+  R++EA  VL   V AG                         
Sbjct: 3   CSPDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAF 62

Query: 309 --------KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
                   K C P  VT+T ++ GLL  GR+ EA+ +L Q M ++G SP + TY  V+ G
Sbjct: 63  QLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQ-MVEKGNSPTLKTYTVVIDG 121

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVW----PS 416
           L +  RVEEA+ +F  MLG G   D+  Y  +I GLC+S + +EA   + +        +
Sbjct: 122 LSKAGRVEEARRIFVDMLGNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHAT 181

Query: 417 NIHDNYVYAAMIKGLCRSGKIHEAVH-FLYELVDSGVTPNIVCYNVVIDGACKLSMKREA 475
            + D   Y ++I GLC++G+I EA   F  E V+ G  P+ V Y  +IDG CKL    E 
Sbjct: 182 AVPDVVTYTSLIDGLCKAGRILEARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVEEG 241

Query: 476 YQILREMRKNGLNPDAVTWRIL 497
            +   EMR  G  PDAVT+  L
Sbjct: 242 CERFHEMRNRGYEPDAVTYAAL 263


>gi|297839331|ref|XP_002887547.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333388|gb|EFH63806.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 763

 Score =  209 bits (532), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 138/490 (28%), Positives = 233/490 (47%), Gaps = 8/490 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC    V E  KL   +  RG +PN+ +Y   I G C+ GE+D A ++   +   G  P+
Sbjct: 226 LCKKGDVKECEKLLDKVIKRGVLPNLFTYNFFIQGLCQKGELDAAVRMVGRLIDQGPKPD 285

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY+ L+ G+ +    + A V + KL       E L  ++  +  L+   C+ G V   
Sbjct: 286 VVTYNYLIYGLCKNSKFQEAEVYLGKLV-----NEGLEPDSFTYNTLIAGYCKGGMVQLA 340

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            RI  +      V +EF    +ID LC  G  + A  +      +G+ P+++ YN+++ G
Sbjct: 341 ERILVNAVFNGFVPDEFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKG 400

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           L   G  + A QL  E  + G +P   T+ +LV GLC    +  A  +++ M+SK     
Sbjct: 401 LSNQGLILEAAQLASEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPD 460

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               NI +            L +L  M+     PDV T N+++NG CK  + E+ ++   
Sbjct: 461 IFTFNILIHGYSTQLKMENALEILDVMMDNGVDPDVYTYNSLLNGLCKTSKYEDVMETYK 520

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            MV  K CAP+  TF  ++  L    ++ +AL LL + M  +  +P  VT+  ++ G  +
Sbjct: 521 TMVE-KGCAPNLFTFNILLESLCRYHKLDKALGLLEE-MKNKSVNPDAVTFGTLIDGFCK 578

Query: 364 LRRVEEAKEVFNCMLGIGVVADST-TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
              ++ A  +F  M  + +V+ ST TY I+I    E   +  A++ + ++V      D Y
Sbjct: 579 NGDLDGAYTLFRKMEEVYMVSCSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGY 638

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
            Y  M+ G C++G +     FL E++++G  P++     VI+  C      EA  I+  M
Sbjct: 639 TYRLMVDGFCKTGNVDLGYKFLLEMMENGFIPSLTTLGRVINCLCVEDRVYEAAGIIHRM 698

Query: 483 RKNGLNPDAV 492
            + GL P+AV
Sbjct: 699 VQKGLVPEAV 708



 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 125/473 (26%), Positives = 228/473 (48%), Gaps = 7/473 (1%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           +AHK++  M+ RG  P+V S+T  +  +CRT     A ++ + M   G   N + Y  +V
Sbjct: 129 QAHKVYMRMRDRGITPDVYSFTIRMKSFCRTSRPHAALRLLNNMSSQGCEMNVVAYCTVV 188

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP 131
            G       +      ++L+ +M     +S+  + F  L+  LC++G V E  ++ + + 
Sbjct: 189 GGFYEENFKDEG----YELFGKMLAS-GVSLCLSTFNKLLHVLCKKGDVKECEKLLDKVI 243

Query: 132 QGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCM 191
           +   +   F     I  LC+ G    A R+V  +  +G  P +V+YN +++GLCK+    
Sbjct: 244 KRGVLPNLFTYNFFIQGLCQKGELDAAVRMVGRLIDQGPKPDVVTYNYLIYGLCKNSKFQ 303

Query: 192 RAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYL 251
            A   L + +  G  P   TY  L+ G C    ++ A ++L   +    V         +
Sbjct: 304 EAEVYLGKLVNEGLEPDSFTYNTLIAGYCKGGMVQLAERILVNAVFNGFVPDEFTYRSLI 363

Query: 252 RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC 311
             LC        L +    L    +P+VI  NT+I G    G I EA ++ ++M + K  
Sbjct: 364 DGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGLILEAAQLASEM-SEKGL 422

Query: 312 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK 371
            P+  TF  ++ GL  +G + +A  L+ +VM  +GY P I T+N ++ G     ++E A 
Sbjct: 423 IPEVQTFNILVNGLCKMGCVSDADGLV-KVMISKGYFPDIFTFNILIHGYSTQLKMENAL 481

Query: 372 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 431
           E+ + M+  GV  D  TY  +++GLC++++ ++    +  +V      + + +  +++ L
Sbjct: 482 EILDVMMDNGVDPDVYTYNSLLNGLCKTSKYEDVMETYKTMVEKGCAPNLFTFNILLESL 541

Query: 432 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484
           CR  K+ +A+  L E+ +  V P+ V +  +IDG CK      AY + R+M +
Sbjct: 542 CRYHKLDKALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEE 594



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 132/529 (24%), Positives = 236/529 (44%), Gaps = 43/529 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M   C  SR   A +L  +M S+G   NVV+Y T++ G+      D  Y++F +M   GV
Sbjct: 153 MKSFCRTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKDEGYELFGKMLASGV 212

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
                T++ L+  + +  DV+    L+ K+ +R      +  N   +   +  LC++G +
Sbjct: 213 SLCLSTFNKLLHVLCKKGDVKECEKLLDKVIKR-----GVLPNLFTYNFFIQGLCQKGEL 267

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +   R+   +       +     ++I  LC++ +   A   +  +   GL P   +YN++
Sbjct: 268 DAAVRMVGRLIDQGPKPDVVTYNYLIYGLCKNSKFQEAEVYLGKLVNEGLEPDSFTYNTL 327

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G CK G    A ++L   +  G++P E TY+ L++GLC E +  +A  +    L K  
Sbjct: 328 IAGYCKGGMVQLAERILVNAVFNGFVPDEFTYRSLIDGLCHEGETNRALALFNEALGKGI 387

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                + N  ++ L       E   +   M +    P+V T N ++NG CKMG + +A  
Sbjct: 388 KPNVILYNTLIKGLSNQGLILEAAQLASEMSEKGLIPEVQTFNILVNGLCKMGCVSDADG 447

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           ++  M++  +  PD  TF  +I G     +++ AL +L  VM   G  P + TYN++L G
Sbjct: 448 LVKVMISKGY-FPDIFTFNILIHGYSTQLKMENALEIL-DVMMDNGVDPDVYTYNSLLNG 505

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L +  + E+  E +  M+  G   +  T+ I+++ LC  ++LD+A    +++   S   D
Sbjct: 506 LCKTSKYEDVMETYKTMVEKGCAPNLFTFNILLESLCRYHKLDKALGLLEEMKNKSVNPD 565

Query: 421 NYVYAAMIKGLCRSGKIHEA-----------------------VH-------------FL 444
              +  +I G C++G +  A                       +H               
Sbjct: 566 AVTFGTLIDGFCKNGDLDGAYTLFRKMEEVYMVSCSTPTYNIIIHAFTEKLNVTMAEKLF 625

Query: 445 YELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVT 493
            E+VD  + P+   Y +++DG CK       Y+ L EM +NG  P   T
Sbjct: 626 QEMVDRCLGPDGYTYRLMVDGFCKTGNVDLGYKFLLEMMENGFIPSLTT 674



 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 119/489 (24%), Positives = 224/489 (45%), Gaps = 42/489 (8%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           +V EA  +F  M      P V SY  ++     +G  D A+KV+  MR  G+ P+  +++
Sbjct: 91  KVQEAVNVFERMDFYDCEPTVFSYNAIMSILVDSGYFDQAHKVYMRMRDRGITPDVYSFT 150

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
           + ++   RT     A     +L   M   +   +N  A+  +V     E + +E + +  
Sbjct: 151 IRMKSFCRTSRPHAA----LRLLNNM-SSQGCEMNVVAYCTVVGGFYEENFKDEGYELF- 204

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
                         G M+ S                    G++  L ++N ++H LCK G
Sbjct: 205 --------------GKMLAS--------------------GVSLCLSTFNKLLHVLCKKG 230

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
                 +LL++ I+ G LP+  TY   ++GLC + +L+ A +++  ++ +         N
Sbjct: 231 DVKECEKLLDKVIKRGVLPNLFTYNFFIQGLCQKGELDAAVRMVGRLIDQGPKPDVVTYN 290

Query: 249 IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 308
             +  LC      E    L  ++    +PD  T NT+I G+CK G ++ A ++L + V  
Sbjct: 291 YLIYGLCKNSKFQEAEVYLGKLVNEGLEPDSFTYNTLIAGYCKGGMVQLAERILVNAVFN 350

Query: 309 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE 368
            F  PD  T+ ++I GL + G    AL L  + +  +G  P ++ YN +++GL     + 
Sbjct: 351 GF-VPDEFTYRSLIDGLCHEGETNRALALFNEAL-GKGIKPNVILYNTLIKGLSNQGLIL 408

Query: 369 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI 428
           EA ++ + M   G++ +  T+ I+++GLC+   + +A      ++      D + +  +I
Sbjct: 409 EAAQLASEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILI 468

Query: 429 KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLN 488
            G     K+  A+  L  ++D+GV P++  YN +++G CK S   +  +  + M + G  
Sbjct: 469 HGYSTQLKMENALEILDVMMDNGVDPDVYTYNSLLNGLCKTSKYEDVMETYKTMVEKGCA 528

Query: 489 PDAVTWRIL 497
           P+  T+ IL
Sbjct: 529 PNLFTFNIL 537



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 109/461 (23%), Positives = 192/461 (41%), Gaps = 43/461 (9%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC  S+  EA      + + G  P+  +Y TLI GYC+ G + +A ++       G +P+
Sbjct: 296 LCKNSKFQEAEVYLGKLVNEGLEPDSFTYNTLIAGYCKGGMVQLAERILVNAVFNGFVPD 355

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             TY  L+ G+    +  RA  L  +   +      +  N   +  L+  L  +G + E 
Sbjct: 356 EFTYRSLIDGLCHEGETNRALALFNEALGK-----GIKPNVILYNTLIKGLSNQGLILEA 410

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            ++A +M +   + E      +++ LC+ G    A  +V VM  +G  P + ++N ++HG
Sbjct: 411 AQLASEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHG 470

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
                    A ++L+  +  G  P  +TY  L+ GLC  S  E   +  + M+ K     
Sbjct: 471 YSTQLKMENALEILDVMMDNGVDPDVYTYNSLLNGLCKTSKYEDVMETYKTMVEKGCAPN 530

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               NI L +LC      + L +L  M      PD +T  T+I+GFCK G ++ A  +  
Sbjct: 531 LFTFNILLESLCRYHKLDKALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFR 590

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            M                                +Y V      S    TYN ++     
Sbjct: 591 KMEE------------------------------VYMV------SCSTPTYNIIIHAFTE 614

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
              V  A+++F  M+   +  D  TY +++DG C++  +D   +F  +++    I     
Sbjct: 615 KLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVDLGYKFLLEMMENGFIPSLTT 674

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
              +I  LC   +++EA   ++ +V  G+ P  V  N + D
Sbjct: 675 LGRVINCLCVEDRVYEAAGIIHRMVQKGLVPEAV--NTIFD 713



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 104/419 (24%), Positives = 193/419 (46%), Gaps = 19/419 (4%)

Query: 88  FKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQ--GKSVNEEFACGHM 145
            +++  M++E+      + + ++++ L   G    +  +  DM Q  G  + E    G M
Sbjct: 24  LEMFNSMRKEDGFKHTLSTYRSIIEKLGLYGKFEAMEEVLVDMRQNVGNHMLEGVYVGAM 83

Query: 146 IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY 205
             +  R G+   A  V   M      P++ SYN+I+  L   G   +A+++       G 
Sbjct: 84  -KNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSILVDSGYFDQAHKVYMRMRDRGI 142

Query: 206 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN------ 259
            P  +++ + ++  C  S    A ++L  M S+        C + + A C +        
Sbjct: 143 TPDVYSFTIRMKSFCRTSRPHAALRLLNNMSSQG-------CEMNVVAYCTVVGGFYEEN 195

Query: 260 -PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTF 318
              E   +   ML +     + T N +++  CK G ++E  K+L D V  +   P+  T+
Sbjct: 196 FKDEGYELFGKMLASGVSLCLSTFNKLLHVLCKKGDVKECEKLL-DKVIKRGVLPNLFTY 254

Query: 319 TTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCML 378
              I GL   G +  A+ ++ +++ Q G  P +VTYN ++ GL +  + +EA+     ++
Sbjct: 255 NFFIQGLCQKGELDAAVRMVGRLIDQ-GPKPDVVTYNYLIYGLCKNSKFQEAEVYLGKLV 313

Query: 379 GIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIH 438
             G+  DS TY  +I G C+   +  A+R   + V+   + D + Y ++I GLC  G+ +
Sbjct: 314 NEGLEPDSFTYNTLIAGYCKGGMVQLAERILVNAVFNGFVPDEFTYRSLIDGLCHEGETN 373

Query: 439 EAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            A+    E +  G+ PN++ YN +I G     +  EA Q+  EM + GL P+  T+ IL
Sbjct: 374 RALALFNEALGKGIKPNVILYNTLIKGLSNQGLILEAAQLASEMSEKGLIPEVQTFNIL 432



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 100/387 (25%), Positives = 177/387 (45%), Gaps = 4/387 (1%)

Query: 116 REGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLV 175
           R+G V E   + E M         F+   ++  L  SG    A +V   MR RG+TP + 
Sbjct: 88  RKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSILVDSGYFDQAHKVYMRMRDRGITPDVY 147

Query: 176 SYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM 235
           S+   +   C+      A +LL      G   +   Y  +V G   E+  ++  ++   M
Sbjct: 148 SFTIRMKSFCRTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKDEGYELFGKM 207

Query: 236 LSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 295
           L+          N  L  LC   +  E   +L  +++    P++ T N  I G C+ G +
Sbjct: 208 LASGVSLCLSTFNKLLHVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNFFIQGLCQKGEL 267

Query: 296 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN 355
           + A++++  ++  +   PD VT+  +I+GL    + QEA   L +++   G  P   TYN
Sbjct: 268 DAAVRMVGRLI-DQGPKPDVVTYNYLIYGLCKNSKFQEAEVYLGKLV-NEGLEPDSFTYN 325

Query: 356 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP 415
            ++ G  +   V+ A+ +    +  G V D  TY  +IDGLC   + + A   +++ +  
Sbjct: 326 TLIAGYCKGGMVQLAERILVNAVFNGFVPDEFTYRSLIDGLCHEGETNRALALFNEALGK 385

Query: 416 SNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREA 475
               +  +Y  +IKGL   G I EA     E+ + G+ P +  +N++++G CK+    +A
Sbjct: 386 GIKPNVILYNTLIKGLSNQGLILEAAQLASEMSEKGLIPEVQTFNILVNGLCKMGCVSDA 445

Query: 476 YQILREMRKNGLNPDAVTWRILDKLHG 502
             +++ M   G  PD  T+ IL  +HG
Sbjct: 446 DGLVKVMISKGYFPDIFTFNIL--IHG 470



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 87/353 (24%), Positives = 152/353 (43%), Gaps = 8/353 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC       A  LF +   +G  PNV+ Y TLI G    G +  A ++  EM   G+
Sbjct: 363 IDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGLILEAAQLASEMSEKGL 422

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P   T+++LV G+ +   V  A+ L+  +  +    +  + N      L+     +  +
Sbjct: 423 IPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFN-----ILIHGYSTQLKM 477

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                I + M       + +    +++ LC++ +          M ++G  P+L ++N +
Sbjct: 478 ENALEILDVMMDNGVDPDVYTYNSLLNGLCKTSKYEDVMETYKTMVEKGCAPNLFTFNIL 537

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +  LC++    +A  LLEE       P   T+  L++G C   DL+ A  + + M     
Sbjct: 538 LESLCRYHKLDKALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEVYM 597

Query: 241 VD-RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
           V   T   NI + A     N T    +   M+     PD  T   +++GFCK G ++   
Sbjct: 598 VSCSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVDLGY 657

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIV 352
           K L +M+   F  P   T   +I  L    R+ EA  ++++ M Q+G  P  V
Sbjct: 658 KFLLEMMENGF-IPSLTTLGRVINCLCVEDRVYEAAGIIHR-MVQKGLVPEAV 708


>gi|357110839|ref|XP_003557223.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Brachypodium distachyon]
          Length = 897

 Score =  209 bits (532), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 141/498 (28%), Positives = 237/498 (47%), Gaps = 17/498 (3%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C       A K+F +M+ R    N V+Y  +I G CR+G ++ A+   +EM   G+ P++
Sbjct: 256 CKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDA 315

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
            TY  L+ G+ +   ++ A  L+ ++         L  N   +A LVD   +EG   E F
Sbjct: 316 FTYGALMNGLCKGGRLKEAKALLDEM-----SCSGLKPNVVVYATLVDGFMKEGKAAEAF 370

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
            I  +M        +    ++I  LC+ G+   AS+++  M K G  P   +Y+ ++ G 
Sbjct: 371 DILNEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLNEMIKVGHRPDTFTYHPLMQGH 430

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
            +H     A++LL E    G LP+ +TY +++ GLC   + ++A  +L+ M+S+      
Sbjct: 431 FQHYDKDGAFELLNEMRNSGILPNAYTYGIMINGLCQNGESKEAGNLLEEMISE-----G 485

Query: 245 RICNIYLRALCLIKNPTE-----LLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
              N ++ A  +I +  E         L  M +    PD+   N++I G   +GRIEEA 
Sbjct: 486 LKPNAFMYAPLIIGHSKEGHISLACESLENMTKANVLPDLFCYNSLIKGLSTVGRIEEAE 545

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           +     V  +   PD  T++ +I G      +++A  LL Q++   G  P   TY  +L 
Sbjct: 546 EYYA-QVQKRGLVPDEFTYSGLIHGYCKTRNLEKADQLLQQML-NSGLKPNADTYTDLLE 603

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
           G F+    E+   +   MLG G   D+  Y IVI  L  S  ++ A     ++     + 
Sbjct: 604 GYFKSNDHEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVP 663

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           D ++Y+++I GLC+   + +AV  L E+   G+ P IVCYN +IDG C+      A  + 
Sbjct: 664 DLHIYSSLISGLCKMADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVF 723

Query: 480 REMRKNGLNPDAVTWRIL 497
             +   GL P+ VT+  L
Sbjct: 724 DSILAKGLLPNCVTYTAL 741



 Score =  209 bits (531), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 136/478 (28%), Positives = 234/478 (48%), Gaps = 7/478 (1%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M+  G  P+V +Y+T +  +C+  + D A KVF+EMR      N +TY+V++ G+ R+  
Sbjct: 236 MEGAGIPPDVYTYSTFLEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGA 295

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
           VE A    F   E M  +  LS +   +  L++ LC+ G + E   + ++M         
Sbjct: 296 VEEA----FGFKEEMV-DYGLSPDAFTYGALMNGLCKGGRLKEAKALLDEMSCSGLKPNV 350

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
                ++D   + G+   A  ++  M   G+ P+ + Y++++ GLCK G   RA +LL E
Sbjct: 351 VVYATLVDGFMKEGKAAEAFDILNEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLNE 410

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
            I+ G+ P   TY  L++G     D + A ++L  M +   +       I +  LC    
Sbjct: 411 MIKVGHRPDTFTYHPLMQGHFQHYDKDGAFELLNEMRNSGILPNAYTYGIMINGLCQNGE 470

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
             E  N+L  M+    +P+      +I G  K G I  A + L +M       PD   + 
Sbjct: 471 SKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGHISLACESLENMTKANVL-PDLFCYN 529

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
           ++I GL  VGRI+EA     QV  +RG  P   TY+ ++ G  + R +E+A ++   ML 
Sbjct: 530 SLIKGLSTVGRIEEAEEYYAQVQ-KRGLVPDEFTYSGLIHGYCKTRNLEKADQLLQQMLN 588

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
            G+  ++ TY  +++G  +SN  ++       ++   +  DN++Y  +I+ L RS  +  
Sbjct: 589 SGLKPNADTYTDLLEGYFKSNDHEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEV 648

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           A   L E+  +G+ P++  Y+ +I G CK++   +A  +L EM K GL P  V +  L
Sbjct: 649 AFMVLTEVEKNGLVPDLHIYSSLISGLCKMADMEKAVGLLDEMAKEGLEPGIVCYNAL 706



 Score =  205 bits (522), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 129/481 (26%), Positives = 242/481 (50%), Gaps = 8/481 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC + ++G A KL  +M   GH P+  +Y  L+ G+ +  + D A+++ +EMR+ G+LPN
Sbjct: 395 LCKIGQLGRASKLLNEMIKVGHRPDTFTYHPLMQGHFQHYDKDGAFELLNEMRNSGILPN 454

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           + TY +++ G+ +  + + A  L+ ++       E L  N   +A L+    +EG+++  
Sbjct: 455 AYTYGIMINGLCQNGESKEAGNLLEEMIS-----EGLKPNAFMYAPLIIGHSKEGHISLA 509

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
               E+M +   + + F    +I  L   GR   A      ++KRGL P   +Y+ ++HG
Sbjct: 510 CESLENMTKANVLPDLFCYNSLIKGLSTVGRIEEAEEYYAQVQKRGLVPDEFTYSGLIHG 569

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK     +A QLL++ +  G  P+  TY  L+EG    +D EK   +LQ ML   D   
Sbjct: 570 YCKTRNLEKADQLLQQMLNSGLKPNADTYTDLLEGYFKSNDHEKVSSILQSMLGSGDKPD 629

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
             I  I +R L   +N      VL  + +    PD+   +++I+G CKM  +E+A+ +L+
Sbjct: 630 NHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKMADMEKAVGLLD 689

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           +M A +   P  V +  +I G    G I  A N+   ++  +G  P  VTY A++ G  +
Sbjct: 690 EM-AKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSIL-AKGLLPNCVTYTALIDGNCK 747

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
              + +A +++  ML  G+  D+  Y ++  G  ++  L++A    +++      H + +
Sbjct: 748 NGDITDAFDLYKDMLDRGIAPDAFVYNVLATGCSDAADLEQALFLTEEMFNRGYAHVS-L 806

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           ++ +++G C+ G++ E    L+ ++D  + PN      VI    K     EA+++  E++
Sbjct: 807 FSTLVRGFCKRGRLQETEKLLHVMMDREIVPNAQTVENVITEFGKAGKLCEAHRVFAELQ 866

Query: 484 K 484
           +
Sbjct: 867 Q 867



 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 120/486 (24%), Positives = 219/486 (45%), Gaps = 7/486 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M+ LC   R+ EA  L  +M   G  PNVV Y TL+ G+ + G+   A+ + +EM   GV
Sbjct: 322 MNGLCKGGRLKEAKALLDEMSCSGLKPNVVVYATLVDGFMKEGKAAEAFDILNEMISAGV 381

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN + Y  L+RG+ +   + RA+ L+ ++  ++    D    +           ++G  
Sbjct: 382 QPNKIMYDNLIRGLCKIGQLGRASKLLNEMI-KVGHRPDTFTYHPLMQGHFQHYDKDG-- 438

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
              F +  +M     +   +  G MI+ LC++G +  A  ++  M   GL P+   Y  +
Sbjct: 439 --AFELLNEMRNSGILPNAYTYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPL 496

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G  K G    A + LE   +   LP    Y  L++GL     +E+A +    +  +  
Sbjct: 497 IIGHSKEGHISLACESLENMTKANVLPDLFCYNSLIKGLSTVGRIEEAEEYYAQVQKRGL 556

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           V      +  +   C  +N  +   +L  ML +  +P+  T   ++ G+ K    E+   
Sbjct: 557 VPDEFTYSGLIHGYCKTRNLEKADQLLQQMLNSGLKPNADTYTDLLEGYFKSNDHEKVSS 616

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +L  M+ G    PD   +  +I  L     ++ A  +L +V  + G  P +  Y++++ G
Sbjct: 617 ILQSML-GSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEV-EKNGLVPDLHIYSSLISG 674

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L ++  +E+A  + + M   G+      Y  +IDG C S  +  A+  +D I+    + +
Sbjct: 675 LCKMADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLLPN 734

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              Y A+I G C++G I +A     +++D G+ P+   YNV+  G    +   +A  +  
Sbjct: 735 CVTYTALIDGNCKNGDITDAFDLYKDMLDRGIAPDAFVYNVLATGCSDAADLEQALFLTE 794

Query: 481 EMRKNG 486
           EM   G
Sbjct: 795 EMFNRG 800



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 109/216 (50%), Gaps = 8/216 (3%)

Query: 282 LNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQV 341
           L+ +++ + K G +  A +V+  M+     AP       ++  LL      +A+ L++++
Sbjct: 178 LDVLVDTYKKNGSVRTAAQVVL-MMGDLGLAPTRRCCNGLLKDLLRA----DAMELVWKL 232

Query: 342 ---MPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE 398
              M   G  P + TY+  L    + R  + AK+VF  M       +  TY ++I GLC 
Sbjct: 233 KGFMEGAGIPPDVYTYSTFLEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCR 292

Query: 399 SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVC 458
           S  ++EA  F +++V      D + Y A++ GLC+ G++ EA   L E+  SG+ PN+V 
Sbjct: 293 SGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGGRLKEAKALLDEMSCSGLKPNVVV 352

Query: 459 YNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
           Y  ++DG  K     EA+ IL EM   G+ P+ + +
Sbjct: 353 YATLVDGFMKEGKAAEAFDILNEMISAGVQPNKIMY 388



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 81/157 (51%)

Query: 341 VMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN 400
           +M   G +P     N +L+ L R   +E   ++   M G G+  D  TY+  ++  C++ 
Sbjct: 200 MMGDLGLAPTRRCCNGLLKDLLRADAMELVWKLKGFMEGAGIPPDVYTYSTFLEAHCKAR 259

Query: 401 QLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYN 460
             D AK+ ++++       +   Y  MI GLCRSG + EA  F  E+VD G++P+   Y 
Sbjct: 260 DFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYG 319

Query: 461 VVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            +++G CK    +EA  +L EM  +GL P+ V +  L
Sbjct: 320 ALMNGLCKGGRLKEAKALLDEMSCSGLKPNVVVYATL 356



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 98/227 (43%), Gaps = 6/227 (2%)

Query: 13  AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVR 72
           A  +  +++  G VP++  Y++LI G C+  +M+ A  + DEM   G+ P  + Y+ L+ 
Sbjct: 649 AFMVLTEVEKNGLVPDLHIYSSLISGLCKMADMEKAVGLLDEMAKEGLEPGIVCYNALID 708

Query: 73  GVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQ 132
           G  R+ D+ RA  +   +  +      L  N   +  L+D  C+ G + + F + +DM  
Sbjct: 709 GFCRSGDISRARNVFDSILAK-----GLLPNCVTYTALIDGNCKNGDITDAFDLYKDMLD 763

Query: 133 GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMR 192
                + F    +      +     A  +   M  RG    +  ++++V G CK G    
Sbjct: 764 RGIAPDAFVYNVLATGCSDAADLEQALFLTEEMFNRGYA-HVSLFSTLVRGFCKRGRLQE 822

Query: 193 AYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
             +LL   +    +P+  T + ++        L +A +V   +  KK
Sbjct: 823 TEKLLHVMMDREIVPNAQTVENVITEFGKAGKLCEAHRVFAELQQKK 869



 Score = 42.0 bits (97), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 60/135 (44%), Gaps = 6/135 (4%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C    + +A  L+ DM  RG  P+   Y  L  G     +++ A  + +EM + G 
Sbjct: 742 IDGNCKNGDITDAFDLYKDMLDRGIAPDAFVYNVLATGCSDAADLEQALFLTEEMFNRGY 801

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
              SL +S LVRG  +   ++    L+  + +R     ++  N     N++    + G +
Sbjct: 802 AHVSL-FSTLVRGFCKRGRLQETEKLLHVMMDR-----EIVPNAQTVENVITEFGKAGKL 855

Query: 121 NEVFRIAEDMPQGKS 135
            E  R+  ++ Q K+
Sbjct: 856 CEAHRVFAELQQKKA 870


>gi|242058841|ref|XP_002458566.1| hypothetical protein SORBIDRAFT_03g035845 [Sorghum bicolor]
 gi|241930541|gb|EES03686.1| hypothetical protein SORBIDRAFT_03g035845 [Sorghum bicolor]
          Length = 796

 Score =  209 bits (532), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 142/502 (28%), Positives = 245/502 (48%), Gaps = 47/502 (9%)

Query: 7   LSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHC-GVLPNSL 65
           LSR  +A   F ++ +RG  P++ + + L+      G++DVA KVF EMR    V P+  
Sbjct: 156 LSRAADA---FLELSARGASPSIKTCSILVEALGCGGQLDVARKVFGEMRDGKTVAPDVH 212

Query: 66  TYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFR 125
           TY+ +++ + R  +++ A  ++ +L         +      +  L+D+LC+ G V E FR
Sbjct: 213 TYTAMIKALCRAGEIDAAFAMLAEL-----RRSGIQPTVVTYNVLMDALCKSGRVEEAFR 267

Query: 126 IAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLC 185
           +   M +G+        G +I  L R  +      V+  M+  G+TP+ V YN ++   C
Sbjct: 268 LKGRMVEGRVRPSIVTFGILISGLARGQQFGEVGAVLQEMQGFGITPNEVIYNEMIGWHC 327

Query: 186 KHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTR 245
           + G C  A +L +E +  G   +  TY ++ + LC E ++E A K+L  ML         
Sbjct: 328 RKGHCSEALKLFDEMVSKGIKQTVVTYNLIAKALCKEGEMEHAEKILDEML--------- 378

Query: 246 ICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK-MGRIEEALKVLND 304
                            L  ++V      C       N+V+    +  GR++  L+++ +
Sbjct: 379 -----------------LAGMMV-----HCS----LFNSVVAWHLRGTGRLDLVLRLIRE 412

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
           M+A +F  P+    T  I  L   G+ +EA  + +QV+  +G    + T NA++ GL + 
Sbjct: 413 MLA-RFLKPNDALMTACIQELCKSGKHEEAAEIWFQVL-GKGLGVNVATSNALIHGLCQG 470

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY 424
             ++EA +V   M+  GV  D  TY I+I G C+++++DEA +  DD++      D + +
Sbjct: 471 NNMKEATKVLKAMVNSGVELDRITYNIMIQGCCKASKMDEAIQLRDDMIKRGFKPDLFTF 530

Query: 425 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484
              +   C  GK+ E +H L ++   G+ P+IV Y  +IDG CK     +A + L E+ K
Sbjct: 531 NIFLHTYCNLGKVEEILHLLDQMKSEGLKPDIVTYGTIIDGYCKAKDMHKANEYLTELMK 590

Query: 485 NGLNPDAVTWRILDKLHGNRGN 506
           NGL P+AV +  L   +G  GN
Sbjct: 591 NGLRPNAVIYNALIGGYGRNGN 612



 Score =  178 bits (452), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 130/502 (25%), Positives = 244/502 (48%), Gaps = 25/502 (4%)

Query: 4   LCGLSR---VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           + GL+R    GE   +  +M+  G  PN V Y  +I  +CR G    A K+FDEM   G+
Sbjct: 288 ISGLARGQQFGEVGAVLQEMQGFGITPNEVIYNEMIGWHCRKGHCSEALKLFDEMVSKGI 347

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLS---VNNAAFANLVDSLCR- 116
               +TY+++ + + +  ++E A        E++ +E  L+   V+ + F ++V    R 
Sbjct: 348 KQTVVTYNLIAKALCKEGEMEHA--------EKILDEMLLAGMMVHCSLFNSVVAWHLRG 399

Query: 117 EGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVS 176
            G ++ V R+  +M        +      I  LC+SG++  A+ + + +  +GL  ++ +
Sbjct: 400 TGRLDLVLRLIREMLARFLKPNDALMTACIQELCKSGKHEEAAEIWFQVLGKGLGVNVAT 459

Query: 177 YNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFML 236
            N+++HGLC+      A ++L+  +  G      TY ++++G C  S +++A ++   M+
Sbjct: 460 SNALIHGLCQGNNMKEATKVLKAMVNSGVELDRITYNIMIQGCCKASKMDEAIQLRDDMI 519

Query: 237 SKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIE 296
            +         NI+L   C +    E+L++L  M     +PD++T  T+I+G+CK   + 
Sbjct: 520 KRGFKPDLFTFNIFLHTYCNLGKVEEILHLLDQMKSEGLKPDIVTYGTIIDGYCKAKDMH 579

Query: 297 EALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
           +A + L +++      P+AV +  +I G    G I +A+ +L   M   G  P  VTYN+
Sbjct: 580 KANEYLTELMKNGL-RPNAVIYNALIGGYGRNGNISDAIGIL-DTMKYNGIQPTPVTYNS 637

Query: 357 VLRGLFRLRRVEEAKEVF-NCM---LGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI 412
           ++  +     VEE K VF  C+   + +GV+     Y I+I G C+  ++DEA  ++ ++
Sbjct: 638 LMYWMCHAGLVEEVKAVFAQCIVKDIELGVIG----YTIIIQGFCKIGKIDEAVMYFKEM 693

Query: 413 VWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMK 472
                  +   Y  ++    +SG   EA     E+V  G+ P+ V YN +I G C++   
Sbjct: 694 HSRGIPPNKMTYTTLMFAYSKSGNKEEASKLFDEMVSLGIVPDSVSYNTLISGFCEVDSL 753

Query: 473 REAYQILREMRKNGLNPDAVTW 494
            +  +   EM    L  D  ++
Sbjct: 754 DKMVESPAEMSSQVLKQDGCSY 775



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 135/557 (24%), Positives = 244/557 (43%), Gaps = 79/557 (14%)

Query: 13  AHKLFFDMKSRGHV-PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           A K+F +M+    V P+V +YT +I   CR GE+D A+ +  E+R  G+ P  +TY+VL+
Sbjct: 194 ARKVFGEMRDGKTVAPDVHTYTAMIKALCRAGEIDAAFAMLAELRRSGIQPTVVTYNVLM 253

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEE--------------------------------- 98
             + ++  VE A    F+L  RM E                                   
Sbjct: 254 DALCKSGRVEEA----FRLKGRMVEGRVRPSIVTFGILISGLARGQQFGEVGAVLQEMQG 309

Query: 99  -DLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMI-DSLCRSGRNH 156
             ++ N   +  ++   CR+G+ +E  ++ ++M   K + +     ++I  +LC+ G   
Sbjct: 310 FGITPNEVIYNEMIGWHCRKGHCSEALKLFDEMVS-KGIKQTVVTYNLIAKALCKEGEME 368

Query: 157 GASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMR-AYQLLEEGIQFGYLPSEHTYKVL 215
            A +++  M   G+      +NS+V    +  G +    +L+ E +     P++      
Sbjct: 369 HAEKILDEMLLAGMMVHCSLFNSVVAWHLRGTGRLDLVLRLIREMLARFLKPNDALMTAC 428

Query: 216 VEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQC 275
           ++ LC     E+A ++   +L K         N  +  LC   N  E   VL  M+ +  
Sbjct: 429 IQELCKSGKHEEAAEIWFQVLGKGLGVNVATSNALIHGLCQGNNMKEATKVLKAMVNSGV 488

Query: 276 QPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEAL 335
           + D IT N +I G CK  +++EA+++ +DM+   F  PD  TF   +    N+G+++E L
Sbjct: 489 ELDRITYNIMIQGCCKASKMDEAIQLRDDMIKRGF-KPDLFTFNIFLHTYCNLGKVEEIL 547

Query: 336 NLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG 395
           +LL Q M   G  P IVTY  ++ G  + + + +A E    ++  G+  ++  Y  +I G
Sbjct: 548 HLLDQ-MKSEGLKPDIVTYGTIIDGYCKAKDMHKANEYLTELMKNGLRPNAVIYNALIGG 606

Query: 396 LCESNQLDEAKRFWDDI----VWPSNIHDNYV---------------------------- 423
              +  + +A    D +    + P+ +  N +                            
Sbjct: 607 YGRNGNISDAIGILDTMKYNGIQPTPVTYNSLMYWMCHAGLVEEVKAVFAQCIVKDIELG 666

Query: 424 ---YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              Y  +I+G C+ GKI EAV +  E+   G+ PN + Y  ++    K   K EA ++  
Sbjct: 667 VIGYTIIIQGFCKIGKIDEAVMYFKEMHSRGIPPNKMTYTTLMFAYSKSGNKEEASKLFD 726

Query: 481 EMRKNGLNPDAVTWRIL 497
           EM   G+ PD+V++  L
Sbjct: 727 EMVSLGIVPDSVSYNTL 743



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 67/337 (19%), Positives = 145/337 (43%), Gaps = 51/337 (15%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C  S++ EA +L  DM  RG  P++ ++   +H YC  G+++    + D+M+  G+ P+ 
Sbjct: 503 CKASKMDEAIQLRDDMIKRGFKPDLFTFNIFLHTYCNLGKVEEILHLLDQMKSEGLKPDI 562

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           +TY  ++ G  + +D+ +AN  + +L +       L  N   +  L+    R G +++  
Sbjct: 563 VTYGTIIDGYCKAKDMHKANEYLTELMKN-----GLRPNAVIYNALIGGYGRNGNISDAI 617

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
            I +                                    M+  G+ P+ V+YNS+++ +
Sbjct: 618 GILD-----------------------------------TMKYNGIQPTPVTYNSLMYWM 642

Query: 185 CKHGGCMRAY-----QLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           C H G +        Q + + I+ G +     Y ++++G C    +++A    + M S+ 
Sbjct: 643 C-HAGLVEEVKAVFAQCIVKDIELGVI----GYTIIIQGFCKIGKIDEAVMYFKEMHSRG 697

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                      + A     N  E   +   M+     PD ++ NT+I+GFC++  +++ +
Sbjct: 698 IPPNKMTYTTLMFAYSKSGNKEEASKLFDEMVSLGIVPDSVSYNTLISGFCEVDSLDKMV 757

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALN 336
           +   +M + +    D  ++   + G+      +EA++
Sbjct: 758 ESPAEM-SSQVLKQDGCSYNAFVDGITTPWCQKEAVS 793


>gi|414882142|tpg|DAA59273.1| TPA: hypothetical protein ZEAMMB73_713491 [Zea mays]
          Length = 987

 Score =  209 bits (532), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 142/528 (26%), Positives = 250/528 (47%), Gaps = 46/528 (8%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C    +  AH+ F  ++  G   +  +   L+ GYCRT ++  A  +   M   G   N 
Sbjct: 190 CKKGSLAIAHRYFCLLRESGMQMDTYTCNALLLGYCRTSDLRKACWLLMMMPLMGCRRNE 249

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
            +Y++L++G+   R V  A VL+F     M   +  S+N   +  L+  LC+EG +++  
Sbjct: 250 YSYTILIQGLCEARCVREALVLVF-----MMVHDGCSLNLHTYTLLIKGLCKEGRIHDAR 304

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
            + ++MP    V   +    MID  C+SGR   A  +  +M + G  P   +YNS+++GL
Sbjct: 305 GLLDEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKALMEQNGCNPDDWTYNSLIYGL 364

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS---KKDV 241
           C  G    A +LL   I  G+ P+  T+  L+ G C    ++ A +V   M+S   K D+
Sbjct: 365 CG-GKLDEAEELLNGAIARGFTPTVITFTNLINGYCKAERIDDALRVKSNMISSNCKLDL 423

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
               +    L   C +K   E LN    M      P+V+T  ++I+G+CK+G +  AL+V
Sbjct: 424 QAYGVLINVLIKKCRLKEAKETLNE---MFANGLAPNVVTYTSIIDGYCKVGMVGAALEV 480

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
              ++  + C P+A T+ ++I+GL+   ++ +A+ L+ + M + G +PG++TY  +++G 
Sbjct: 481 FK-LMEHEGCHPNAWTYGSLIYGLIQDKKLHKAMALITK-MQEDGITPGVITYTTLIQGQ 538

Query: 362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRF-------WDDIVW 414
            +    + A  +F  M   G+  D   Y ++ D LC+S + +EA  F          + +
Sbjct: 539 CKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTDALCKSGRAEEAYSFLVRKGVVLTKVTY 598

Query: 415 PSNIH-------------------------DNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449
            S +                          D Y Y+ +++ LC+  K++EA+  L ++  
Sbjct: 599 TSLVDGFSKAGNTDFAAVLIEKMVNEGCKADLYTYSVLLQALCKQKKLNEALSILDQMTV 658

Query: 450 SGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           SGV  NIV Y ++I    K      A  +  EM  +G  P A T+ + 
Sbjct: 659 SGVKCNIVAYTIIISEMIKEGKHDHAKSLFNEMISSGHKPSATTYTVF 706



 Score =  184 bits (467), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 136/511 (26%), Positives = 239/511 (46%), Gaps = 36/511 (7%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           R+ EA +   +M + G  PNVV+YT++I GYC+ G +  A +VF  M H G  PN+ TY 
Sbjct: 438 RLKEAKETLNEMFANGLAPNVVTYTSIIDGYCKVGMVGAALEVFKLMEHEGCHPNAWTYG 497

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
            L+ G+++ + + +A  L+ K+     +E+ ++     +  L+   C++   +  FR+ E
Sbjct: 498 SLIYGLIQDKKLHKAMALITKM-----QEDGITPGVITYTTLIQGQCKKHEFDNAFRLFE 552

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
            M Q     +E A   + D+LC+SGR   A      + ++G+  + V+Y S+V G  K G
Sbjct: 553 MMEQNGLTPDEQAYNVLTDALCKSGR---AEEAYSFLVRKGVVLTKVTYTSLVDGFSKAG 609

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
               A  L+E+ +  G     +TY VL++ LC +  L +A  +L  M     V   + CN
Sbjct: 610 NTDFAAVLIEKMVNEGCKADLYTYSVLLQALCKQKKLNEALSILDQM----TVSGVK-CN 664

Query: 249 IYLRALC---LIKNPTELLNVLVF--MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
           I    +    +IK         +F  M+ +  +P   T    I+ +CK+GRIEEA  ++ 
Sbjct: 665 IVAYTIIISEMIKEGKHDHAKSLFNEMISSGHKPSATTYTVFISSYCKIGRIEEAEHLIG 724

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR---- 359
           +M       PD VT+   I G  ++G I  A + L + M      P   TY  +L+    
Sbjct: 725 EMERDGV-TPDVVTYNIFINGCGHMGYIDRAFSTLKR-MVDASCEPNCWTYWLLLKHFLK 782

Query: 360 ------------GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKR 407
                       G++    +    ++   M+  G+     TY+ +I G C++ +L+EA  
Sbjct: 783 MSLINAHYVDTSGMWNWIELNMVWQLLERMMKHGLNPTVVTYSSIIAGFCKATRLEEACV 842

Query: 408 FWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGAC 467
             D ++      +  +Y  +IK  C      +AV F+ ++++ G  P +  Y+ +I G C
Sbjct: 843 LLDHMLGKDISPNEEIYTMLIKCCCDIKLFGKAVSFVTDMIEFGFQPQLESYHYLIVGLC 902

Query: 468 KLSMKREAYQILREMRKNGLNPDAVTWRILD 498
                  A  +  ++     N + V W+IL+
Sbjct: 903 DEGDYDRAKSLFCDLLGMDYNHNEVAWKILN 933



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 129/496 (26%), Positives = 218/496 (43%), Gaps = 11/496 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R+ +A  L  +M  RG VP+V +Y  +I GYC++G M  A  +   M   G  P+
Sbjct: 294 LCKEGRIHDARGLLDEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKALMEQNGCNPD 353

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             TY+ L+ G+   + ++ A  L+     R       +     F NL++  C+   +++ 
Sbjct: 354 DWTYNSLIYGLCGGK-LDEAEELLNGAIAR-----GFTPTVITFTNLINGYCKAERIDDA 407

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            R+  +M       +  A G +I+ L +  R   A   +  M   GL P++V+Y SI+ G
Sbjct: 408 LRVKSNMISSNCKLDLQAYGVLINVLIKKCRLKEAKETLNEMFANGLAPNVVTYTSIIDG 467

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK G    A ++ +     G  P+  TY  L+ GL  +  L KA  ++  M        
Sbjct: 468 YCKVGMVGAALEVFKLMEHEGCHPNAWTYGSLIYGLIQDKKLHKAMALITKMQEDGITPG 527

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                  ++  C          +   M Q    PD    N + +  CK GR EEA   L 
Sbjct: 528 VITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTDALCKSGRAEEAYSFL- 586

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
                K      VT+T+++ G    G    A  +L + M   G    + TY+ +L+ L +
Sbjct: 587 ---VRKGVVLTKVTYTSLVDGFSKAGNTDFA-AVLIEKMVNEGCKADLYTYSVLLQALCK 642

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
            +++ EA  + + M   GV  +   Y I+I  + +  + D AK  +++++   +      
Sbjct: 643 QKKLNEALSILDQMTVSGVKCNIVAYTIIISEMIKEGKHDHAKSLFNEMISSGHKPSATT 702

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y   I   C+ G+I EA H + E+   GVTP++V YN+ I+G   +     A+  L+ M 
Sbjct: 703 YTVFISSYCKIGRIEEAEHLIGEMERDGVTPDVVTYNIFINGCGHMGYIDRAFSTLKRMV 762

Query: 484 KNGLNPDAVTWRILDK 499
                P+  T+ +L K
Sbjct: 763 DASCEPNCWTYWLLLK 778



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 124/498 (24%), Positives = 219/498 (43%), Gaps = 15/498 (3%)

Query: 6   GLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDV--AYKVFDEMRHCG---V 60
           G      +H     + +R   P       L    C     DV  A      +R  G   +
Sbjct: 81  GFRHTAASHAALLQLLARRRAPANYDKLVLSMISCSGTAEDVREAVDAIQAIRRVGGKRL 140

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           + +   Y++ +R +LR    E     M KL+  + +E  L  +   +  ++ + C++G +
Sbjct: 141 VLSPKCYNLALRSLLRFDMTE----YMGKLYSHLVQE-GLLPDTVTYNTMIMAYCKKGSL 195

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
               R    + +     + + C  ++   CR+     A  ++ +M   G   +  SY  +
Sbjct: 196 AIAHRYFCLLRESGMQMDTYTCNALLLGYCRTSDLRKACWLLMMMPLMGCRRNEYSYTIL 255

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GLC+      A  L+   +  G   + HTY +L++GLC E  +  AR +L  M  +  
Sbjct: 256 IQGLCEARCVREALVLVFMMVHDGCSLNLHTYTLLIKGLCKEGRIHDARGLLDEMPLRGV 315

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           V      N  +   C      + L +   M Q  C PD  T N++I G C  G+++EA +
Sbjct: 316 VPSVWTYNAMIDGYCKSGRMKDALGIKALMEQNGCNPDDWTYNSLIYGLCG-GKLDEAEE 374

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +LN  +A  F  P  +TFT +I G     RI +AL +    M        +  Y  ++  
Sbjct: 375 LLNGAIARGF-TPTVITFTNLINGYCKAERIDDALRVKSN-MISSNCKLDLQAYGVLINV 432

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L +  R++EAKE  N M   G+  +  TY  +IDG C+   +  A   +  ++     H 
Sbjct: 433 LIKKCRLKEAKETLNEMFANGLAPNVVTYTSIIDGYCKVGMVGAALEVF-KLMEHEGCHP 491

Query: 421 N-YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           N + Y ++I GL +  K+H+A+  + ++ + G+TP ++ Y  +I G CK      A+++ 
Sbjct: 492 NAWTYGSLIYGLIQDKKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLF 551

Query: 480 REMRKNGLNPDAVTWRIL 497
             M +NGL PD   + +L
Sbjct: 552 EMMEQNGLTPDEQAYNVL 569



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 72/159 (45%), Gaps = 7/159 (4%)

Query: 354 YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413
           YN  LR L R    E   ++++ ++  G++ D+ TY  +I   C+   L  A R++  + 
Sbjct: 147 YNLALRSLLRFDMTEYMGKLYSHLVQEGLLPDTVTYNTMIMAYCKKGSLAIAHRYFCLLR 206

Query: 414 WPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKR 473
                 D Y   A++ G CR+  + +A   L  +   G   N   Y ++I G C+    R
Sbjct: 207 ESGMQMDTYTCNALLLGYCRTSDLRKACWLLMMMPLMGCRRNEYSYTILIQGLCEARCVR 266

Query: 474 EAYQILREMRKNGLNPDAVTWRILDK-------LHGNRG 505
           EA  ++  M  +G + +  T+ +L K       +H  RG
Sbjct: 267 EALVLVFMMVHDGCSLNLHTYTLLIKGLCKEGRIHDARG 305


>gi|449476143|ref|XP_004154653.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g01110-like [Cucumis sativus]
          Length = 749

 Score =  209 bits (531), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 130/477 (27%), Positives = 242/477 (50%), Gaps = 9/477 (1%)

Query: 16  LFF--DMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRG 73
           +FF  DM+ +G   ++V+Y TLI+ YCR G ++ A+++ +     G+ P  LTY+ ++ G
Sbjct: 277 MFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYG 336

Query: 74  VLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQG 133
           + +    +RA  ++ ++ +       L+ N A +  L+  +CR   + E   I ++M + 
Sbjct: 337 LCKIGKYDRAKDVLIEMLQL-----GLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRR 391

Query: 134 KSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRA 193
             + +  +   +I  L R+G  + A      M + G+ P  V Y  ++ G C++G    A
Sbjct: 392 GVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDA 451

Query: 194 YQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRA 253
            ++ +E +  G      TY   + GLC +     A  +   M+ +  V         +R 
Sbjct: 452 LKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRG 511

Query: 254 LCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAP 313
            C   N  + LN+   M++T  +PD +T NT+I+GFCK G +  A ++ +DM+  K   P
Sbjct: 512 YCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIR-KDIIP 570

Query: 314 DAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEV 373
           D +++ T++ G  + G + EALNL  Q M ++G  P +VT N +++G  R   + +A E 
Sbjct: 571 DHISYGTVLNGFCSSGLLPEALNLCDQ-MLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEY 629

Query: 374 FNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR 433
            + M+  G++ DS +Y  +IDG  +   L++A    +++       +   Y  ++ G C 
Sbjct: 630 LSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCA 689

Query: 434 SGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD 490
            GK+ EA   L ++++ G+ P+   Y+ +I+G       +EA++   EM + GL PD
Sbjct: 690 EGKMQEAEQVLRKMIEIGINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQRGLVPD 746



 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 132/471 (28%), Positives = 241/471 (51%), Gaps = 17/471 (3%)

Query: 32  YTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLW 91
           Y  L+  Y +  ++    + F  +R  GV  +    + L+ G++RT  V+ A       W
Sbjct: 190 YDLLVRTYVQAKKLREGSEAFQILRRKGVSVSINACNKLLGGLVRTGWVDLA-------W 242

Query: 92  ERMKE--EEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFAC-GHMIDS 148
           E   E     + +N      +V++LC++     V     DM +GK V  +      +I++
Sbjct: 243 EIYGEVVRGGIELNVYTLNIMVNALCKDRKFENVMFFLSDM-EGKGVFADIVTYNTLINA 301

Query: 149 LCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPS 208
            CR G    A +++     RG+ P L++YN+I++GLCK G   RA  +L E +Q G  P+
Sbjct: 302 YCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPN 361

Query: 209 EHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLV 268
             TY  L+  +C   ++ +A+++   M S++ V    +    L  + L +N      ++ 
Sbjct: 362 AATYNTLLVEICRRDNILEAQEIFDEM-SRRGVLPDLVSFSSLIGV-LARNGHLYQALMH 419

Query: 269 F--MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
           F  M ++   PD +    +I+GFC+ G + +ALK+ ++M+A + C  D VT+ T + GL 
Sbjct: 420 FREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLA-RGCFMDVVTYNTFLNGLC 478

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
                 +A ++L+  M +RG  P   T+  ++RG  +   +++A  +F  M+   +  D 
Sbjct: 479 KKKMFADA-DMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDK 537

Query: 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE 446
            TY  +IDG C++ ++  AK  WDD++    I D+  Y  ++ G C SG + EA++   +
Sbjct: 538 VTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQ 597

Query: 447 LVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           +++ G+ PN+V  N +I G C+     +AY+ L +M  NG+ PD+ ++  L
Sbjct: 598 MLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTL 648



 Score =  195 bits (495), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 141/534 (26%), Positives = 251/534 (47%), Gaps = 44/534 (8%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           ++ E  + F  ++ +G   ++ +   L+ G  RTG +D+A++++ E+   G+  N  T +
Sbjct: 202 KLREGSEAFQILRRKGVSVSINACNKLLGGLVRTGWVDLAWEIYGEVVRGGIELNVYTLN 261

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
           ++V  + + R  E    +MF L +   E + +  +   +  L+++ CREG V E F++  
Sbjct: 262 IMVNALCKDRKFEN---VMFFLSD--MEGKGVFADIVTYNTLINAYCREGLVEEAFQLLN 316

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
                           ++  LC+ G+   A  V+  M + GLTP+  +YN+++  +C+  
Sbjct: 317 SFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRD 376

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
             + A ++ +E  + G LP   ++  L+  L     L +A    + M     V    I  
Sbjct: 377 NILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYT 436

Query: 249 IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 308
           I +   C     ++ L +   ML   C  DV+T NT +NG CK     +A  + N+MV  
Sbjct: 437 ILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVE- 495

Query: 309 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE 368
           +   PD  TFTT+I G    G + +ALNL ++ M +    P  VTYN ++ G  +   + 
Sbjct: 496 RGMVPDFYTFTTLIRGYCKDGNMDKALNL-FEAMVRTNLKPDKVTYNTLIDGFCKAGEMG 554

Query: 369 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYA-AM 427
            AKE+++ M+   ++ D  +Y  V++G C S  L EA    D ++    I  N V    +
Sbjct: 555 RAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQML-EKGIRPNLVTCNTL 613

Query: 428 IKGLCRSGKIHEAVHFLYELVDSGVTP--------------------------------- 454
           IKG CRSG + +A  +L +++ +G+ P                                 
Sbjct: 614 IKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGL 673

Query: 455 --NIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
             NI+ YN++++G C     +EA Q+LR+M + G+NPD  T+  L   H ++ N
Sbjct: 674 QFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLINGHVSQDN 727



 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 110/418 (26%), Positives = 211/418 (50%), Gaps = 7/418 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC + +   A  +  +M   G  PN  +Y TL+   CR   +  A ++FDEM   GVLP+
Sbjct: 337 LCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPD 396

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +++S L+  + R   + +A ++ F+  ER      +  +N  +  L+D  CR G +++ 
Sbjct: 397 LVSFSSLIGVLARNGHLYQA-LMHFREMER----SGIVPDNVIYTILIDGFCRNGALSDA 451

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            ++ ++M       +       ++ LC+      A  +   M +RG+ P   ++ +++ G
Sbjct: 452 LKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRG 511

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK G   +A  L E  ++    P + TY  L++G C   ++ +A+++   M+ K  +  
Sbjct: 512 YCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPD 571

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                  L   C      E LN+   ML+   +P+++T NT+I G+C+ G + +A + L+
Sbjct: 572 HISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLS 631

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            M++     PD+ ++ T+I G L    +++A  L+ + M +RG    I+TYN +L G   
Sbjct: 632 KMISNGII-PDSFSYNTLIDGYLKEANLEKAFILINE-MEKRGLQFNIITYNLILNGFCA 689

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
             +++EA++V   M+ IG+  D  TY+ +I+G    + + EA RF D+++    + D+
Sbjct: 690 EGKMQEAEQVLRKMIEIGINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQRGLVPDD 747



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 91/349 (26%), Positives = 171/349 (48%), Gaps = 42/349 (12%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C    + +A K+  +M +RG   +VV+Y T ++G C+      A  +F+EM   G+
Sbjct: 439 IDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGM 498

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P+  T++ L+RG  +  ++++A      L+E M    +L  +   +  L+D  C+ G +
Sbjct: 499 VPDFYTFTTLIRGYCKDGNMDKA----LNLFEAMV-RTNLKPDKVTYNTLIDGFCKAGEM 553

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                + +DM +   + +  + G +++  C SG    A  +   M ++G+ P+LV+ N++
Sbjct: 554 GRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTL 613

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G C+ G   +AY+ L + I  G +P   +Y  L++G   E++LEKA     F+L  + 
Sbjct: 614 IKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKA-----FILINE- 667

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                        M +   Q ++IT N ++NGFC  G+++EA +
Sbjct: 668 -----------------------------MEKRGLQFNIITYNLILNGFCAEGKMQEAEQ 698

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSP 349
           VL  M+      PD  T++++I G ++   ++EA    +  M QRG  P
Sbjct: 699 VLRKMIEIGI-NPDGATYSSLINGHVSQDNMKEAFR-FHDEMLQRGLVP 745


>gi|449442579|ref|XP_004139059.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Cucumis sativus]
          Length = 749

 Score =  209 bits (531), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 130/477 (27%), Positives = 242/477 (50%), Gaps = 9/477 (1%)

Query: 16  LFF--DMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRG 73
           +FF  DM+ +G   ++V+Y TLI+ YCR G ++ A+++ +     G+ P  LTY+ ++ G
Sbjct: 277 MFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYG 336

Query: 74  VLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQG 133
           + +    +RA  ++ ++ +       L+ N A +  L+  +CR   + E   I ++M + 
Sbjct: 337 LCKIGKYDRAKDVLIEMLQL-----GLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRR 391

Query: 134 KSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRA 193
             + +  +   +I  L R+G  + A      M + G+ P  V Y  ++ G C++G    A
Sbjct: 392 GVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDA 451

Query: 194 YQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRA 253
            ++ +E +  G      TY   + GLC +     A  +   M+ +  V         +R 
Sbjct: 452 LKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRG 511

Query: 254 LCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAP 313
            C   N  + LN+   M++T  +PD +T NT+I+GFCK G +  A ++ +DM+  K   P
Sbjct: 512 YCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIR-KDIIP 570

Query: 314 DAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEV 373
           D +++ T++ G  + G + EALNL  Q M ++G  P +VT N +++G  R   + +A E 
Sbjct: 571 DHISYGTVLNGFCSSGLLPEALNLCDQ-MLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEY 629

Query: 374 FNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR 433
            + M+  G++ DS +Y  +IDG  +   L++A    +++       +   Y  ++ G C 
Sbjct: 630 LSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCA 689

Query: 434 SGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD 490
            GK+ EA   L ++++ G+ P+   Y+ +I+G       +EA++   EM + GL PD
Sbjct: 690 EGKMQEAEQVLRKMIEIGINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQRGLVPD 746



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 132/471 (28%), Positives = 241/471 (51%), Gaps = 17/471 (3%)

Query: 32  YTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLW 91
           Y  L+  Y +  ++    + F  +R  GV  +    + L+ G++RT  V+ A       W
Sbjct: 190 YDLLVRTYVQAKKLREGSEAFQILRRKGVSVSINACNKLLGGLVRTGWVDLA-------W 242

Query: 92  ERMKE--EEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFAC-GHMIDS 148
           E   E     + +N      +V++LC++     V     DM +GK V  +      +I++
Sbjct: 243 EIYGEVVRGGIELNVYTLNIMVNALCKDRKFENVMFFLSDM-EGKGVFADIVTYNTLINA 301

Query: 149 LCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPS 208
            CR G    A +++     RG+ P L++YN+I++GLCK G   RA  +L E +Q G  P+
Sbjct: 302 YCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPN 361

Query: 209 EHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLV 268
             TY  L+  +C   ++ +A+++   M S++ V    +    L  + L +N      ++ 
Sbjct: 362 AATYNTLLVEICRRDNILEAQEIFDEM-SRRGVLPDLVSFSSLIGV-LARNGHLYQALMH 419

Query: 269 F--MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
           F  M ++   PD +    +I+GFC+ G + +ALK+ ++M+A + C  D VT+ T + GL 
Sbjct: 420 FREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLA-RGCFMDVVTYNTFLNGLC 478

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
                 +A ++L+  M +RG  P   T+  ++RG  +   +++A  +F  M+   +  D 
Sbjct: 479 KKKMFADA-DMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDK 537

Query: 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE 446
            TY  +IDG C++ ++  AK  WDD++    I D+  Y  ++ G C SG + EA++   +
Sbjct: 538 VTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQ 597

Query: 447 LVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           +++ G+ PN+V  N +I G C+     +AY+ L +M  NG+ PD+ ++  L
Sbjct: 598 MLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTL 648



 Score =  195 bits (495), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 141/534 (26%), Positives = 251/534 (47%), Gaps = 44/534 (8%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           ++ E  + F  ++ +G   ++ +   L+ G  RTG +D+A++++ E+   G+  N  T +
Sbjct: 202 KLREGSEAFQILRRKGVSVSINACNKLLGGLVRTGWVDLAWEIYGEVVRGGIELNVYTLN 261

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
           ++V  + + R  E    +MF L +   E + +  +   +  L+++ CREG V E F++  
Sbjct: 262 IMVNALCKDRKFEN---VMFFLSD--MEGKGVFADIVTYNTLINAYCREGLVEEAFQLLN 316

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
                           ++  LC+ G+   A  V+  M + GLTP+  +YN+++  +C+  
Sbjct: 317 SFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRD 376

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
             + A ++ +E  + G LP   ++  L+  L     L +A    + M     V    I  
Sbjct: 377 NILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYT 436

Query: 249 IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 308
           I +   C     ++ L +   ML   C  DV+T NT +NG CK     +A  + N+MV  
Sbjct: 437 ILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVE- 495

Query: 309 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE 368
           +   PD  TFTT+I G    G + +ALNL ++ M +    P  VTYN ++ G  +   + 
Sbjct: 496 RGMVPDFYTFTTLIRGYCKDGNMDKALNL-FEAMVRTNLKPDKVTYNTLIDGFCKAGEMG 554

Query: 369 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYA-AM 427
            AKE+++ M+   ++ D  +Y  V++G C S  L EA    D ++    I  N V    +
Sbjct: 555 RAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQML-EKGIRPNLVTCNTL 613

Query: 428 IKGLCRSGKIHEAVHFLYELVDSGVTP--------------------------------- 454
           IKG CRSG + +A  +L +++ +G+ P                                 
Sbjct: 614 IKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGL 673

Query: 455 --NIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
             NI+ YN++++G C     +EA Q+LR+M + G+NPD  T+  L   H ++ N
Sbjct: 674 QFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLINGHVSQDN 727



 Score =  185 bits (469), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 110/418 (26%), Positives = 211/418 (50%), Gaps = 7/418 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC + +   A  +  +M   G  PN  +Y TL+   CR   +  A ++FDEM   GVLP+
Sbjct: 337 LCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPD 396

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +++S L+  + R   + +A ++ F+  ER      +  +N  +  L+D  CR G +++ 
Sbjct: 397 LVSFSSLIGVLARNGHLYQA-LMHFREMER----SGIVPDNVIYTILIDGFCRNGALSDA 451

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            ++ ++M       +       ++ LC+      A  +   M +RG+ P   ++ +++ G
Sbjct: 452 LKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRG 511

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK G   +A  L E  ++    P + TY  L++G C   ++ +A+++   M+ K  +  
Sbjct: 512 YCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPD 571

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                  L   C      E LN+   ML+   +P+++T NT+I G+C+ G + +A + L+
Sbjct: 572 HISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLS 631

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            M++     PD+ ++ T+I G L    +++A  L+ + M +RG    I+TYN +L G   
Sbjct: 632 KMISNGII-PDSFSYNTLIDGYLKEANLEKAFILINE-MEKRGLQFNIITYNLILNGFCA 689

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
             +++EA++V   M+ IG+  D  TY+ +I+G    + + EA RF D+++    + D+
Sbjct: 690 EGKMQEAEQVLRKMIEIGINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQRGLVPDD 747



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 91/349 (26%), Positives = 171/349 (48%), Gaps = 42/349 (12%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C    + +A K+  +M +RG   +VV+Y T ++G C+      A  +F+EM   G+
Sbjct: 439 IDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGM 498

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P+  T++ L+RG  +  ++++A      L+E M    +L  +   +  L+D  C+ G +
Sbjct: 499 VPDFYTFTTLIRGYCKDGNMDKA----LNLFEAMV-RTNLKPDKVTYNTLIDGFCKAGEM 553

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                + +DM +   + +  + G +++  C SG    A  +   M ++G+ P+LV+ N++
Sbjct: 554 GRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTL 613

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G C+ G   +AY+ L + I  G +P   +Y  L++G   E++LEKA     F+L  + 
Sbjct: 614 IKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKA-----FILINE- 667

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                        M +   Q ++IT N ++NGFC  G+++EA +
Sbjct: 668 -----------------------------MEKRGLQFNIITYNLILNGFCAEGKMQEAEQ 698

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSP 349
           VL  M+      PD  T++++I G ++   ++EA    +  M QRG  P
Sbjct: 699 VLRKMIEIGI-NPDGATYSSLINGHVSQDNMKEAFR-FHDEMLQRGLVP 745


>gi|357116365|ref|XP_003559952.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Brachypodium distachyon]
          Length = 627

 Score =  209 bits (531), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 138/484 (28%), Positives = 245/484 (50%), Gaps = 49/484 (10%)

Query: 27  PNVVSYTTLIHGYC---RTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERA 83
           P  VSYTTL+   C   RTG+   A  +  +M+  GV P+ +TY  L+RG+    DV++A
Sbjct: 111 PTAVSYTTLMRALCAERRTGQ---AVGLLRDMQASGVRPDVVTYGTLIRGLCDAADVDKA 167

Query: 84  NVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFAC- 142
             L+ ++      E  +  N   ++ L+   C+ G    V ++ E+M  G+ +  +    
Sbjct: 168 VELLREMC-----ESGIEPNVVVYSCLLQGYCKAGRWECVSKVFEEM-SGRGIEPDVVMY 221

Query: 143 GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQ 202
             +IDSLCR G+   A++V+  M +RGL P++V+YN +++ +CK G    A  L    ++
Sbjct: 222 TGLIDSLCREGKVKKATQVMDKMMERGLEPNVVTYNVLINSMCKEGSVKEAMSLRNNMLE 281

Query: 203 FGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTE 262
            G      TY  L+ GL G  ++++A  +L+ M+                          
Sbjct: 282 KGVALDAVTYNTLITGLSGVLEMDEAMGLLEEMIHG------------------------ 317

Query: 263 LLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTII 322
                    +T  +P+V+T N+VI+G CK GR+ +A +V  DM+A   CA + VTF  +I
Sbjct: 318 ---------ETMVEPNVVTFNSVIHGLCKTGRMRQAFQV-RDMMAENGCACNLVTFNLLI 367

Query: 323 FGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGV 382
            GLL V ++++A+ L+ + M   G  P   TY+ ++ G  ++ +V+ A+ + + M   G+
Sbjct: 368 GGLLRVHKVKKAMELMDE-MASSGLEPDSFTYSILINGFCKMWQVDRAESLLSKMRRDGI 426

Query: 383 VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVH 442
             +   Y  ++  LCE   +++A+ F+D++     + D   Y+ MI G CR      A  
Sbjct: 427 EPELVHYIPLLAALCEQGMMEQARNFFDEMHKNCKL-DVVAYSTMIHGACRLRDRKSAEE 485

Query: 443 FLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
           FL  ++D G+ P+ V Y+++I+          A ++L++M  +G  PD   +  L K +G
Sbjct: 486 FLKHMLDEGLIPDSVTYSMLINMFANSGDLGAAERVLKQMTASGFVPDVAVFDSLIKGYG 545

Query: 503 NRGN 506
            +G+
Sbjct: 546 AKGD 549



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 118/447 (26%), Positives = 214/447 (47%), Gaps = 47/447 (10%)

Query: 101 SVNNA-AFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGAS 159
           SV +A ++  ++ +LCR+G   +       +   ++     +   ++ +LC   R   A 
Sbjct: 74  SVRDAVSYNTVLAALCRQGGCLDAALFLLRVMAHETRPTAVSYTTLMRALCAERRTGQAV 133

Query: 160 RVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGL 219
            ++  M+  G+ P +V+Y +++ GLC      +A +LL E  + G  P+   Y  L++G 
Sbjct: 134 GLLRDMQASGVRPDVVTYGTLIRGLCDAADVDKAVELLREMCESGIEPNVVVYSCLLQGY 193

Query: 220 CGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDV 279
           C     E   KV + M  +       +    + +LC      +   V+  M++   +P+V
Sbjct: 194 CKAGRWECVSKVFEEMSGRGIEPDVVMYTGLIDSLCREGKVKKATQVMDKMMERGLEPNV 253

Query: 280 ITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLY 339
           +T N +IN  CK G ++EA+ + N+M+  K  A DAVT+ T+I GL  V  + EA+ LL 
Sbjct: 254 VTYNVLINSMCKEGSVKEAMSLRNNMLE-KGVALDAVTYNTLITGLSGVLEMDEAMGLLE 312

Query: 340 QVM-PQRGYSPGIVTYNAVLR-----------------------------------GLFR 363
           +++  +    P +VT+N+V+                                    GL R
Sbjct: 313 EMIHGETMVEPNVVTFNSVIHGLCKTGRMRQAFQVRDMMAENGCACNLVTFNLLIGGLLR 372

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD----DIVWPSNIH 419
           + +V++A E+ + M   G+  DS TY+I+I+G C+  Q+D A+        D + P  +H
Sbjct: 373 VHKVKKAMELMDEMASSGLEPDSFTYSILINGFCKMWQVDRAESLLSKMRRDGIEPELVH 432

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
               Y  ++  LC  G + +A +F  E+       ++V Y+ +I GAC+L  ++ A + L
Sbjct: 433 ----YIPLLAALCEQGMMEQARNFFDEM-HKNCKLDVVAYSTMIHGACRLRDRKSAEEFL 487

Query: 480 REMRKNGLNPDAVTWRILDKLHGNRGN 506
           + M   GL PD+VT+ +L  +  N G+
Sbjct: 488 KHMLDEGLIPDSVTYSMLINMFANSGD 514



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 102/363 (28%), Positives = 192/363 (52%), Gaps = 16/363 (4%)

Query: 149 LCRSGRNHGASRVVYVMRKRGL--TPSL----------VSYNSIVHGLCKHGGCMRAYQL 196
           L R GR   ++R+  ++R   L  +P+L          VSYN+++  LC+ GGC+ A   
Sbjct: 41  LLRRGRAEASARLNRLLRLVPLPESPALLSSLPSVRDAVSYNTVLAALCRQGGCLDAALF 100

Query: 197 LEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCL 256
           L   +     P+  +Y  L+  LC E    +A  +L+ M +             +R LC 
Sbjct: 101 LLRVMAHETRPTAVSYTTLMRALCAERRTGQAVGLLRDMQASGVRPDVVTYGTLIRGLCD 160

Query: 257 IKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAV 316
             +  + + +L  M ++  +P+V+  + ++ G+CK GR E   KV  +M +G+   PD V
Sbjct: 161 AADVDKAVELLREMCESGIEPNVVVYSCLLQGYCKAGRWECVSKVFEEM-SGRGIEPDVV 219

Query: 317 TFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNC 376
            +T +I  L   G++++A  ++ ++M +RG  P +VTYN ++  + +   V+EA  + N 
Sbjct: 220 MYTGLIDSLCREGKVKKATQVMDKMM-ERGLEPNVVTYNVLINSMCKEGSVKEAMSLRNN 278

Query: 377 MLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV--YAAMIKGLCRS 434
           ML  GV  D+ TY  +I GL    ++DEA    ++++    + +  V  + ++I GLC++
Sbjct: 279 MLEKGVALDAVTYNTLITGLSGVLEMDEAMGLLEEMIHGETMVEPNVVTFNSVIHGLCKT 338

Query: 435 GKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
           G++ +A      + ++G   N+V +N++I G  ++   ++A +++ EM  +GL PD+ T+
Sbjct: 339 GRMRQAFQVRDMMAENGCACNLVTFNLLIGGLLRVHKVKKAMELMDEMASSGLEPDSFTY 398

Query: 495 RIL 497
            IL
Sbjct: 399 SIL 401



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 117/456 (25%), Positives = 211/456 (46%), Gaps = 63/456 (13%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC  + V +A +L  +M   G  PNVV Y+ L+ GYC+ G  +   KVF+EM   G+ P+
Sbjct: 158 LCDAADVDKAVELLREMCESGIEPNVVVYSCLLQGYCKAGRWECVSKVFEEMSGRGIEPD 217

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            + Y+ L+  + R   V++A  +M K+ ER      L  N   +  L++S+C+EG V E 
Sbjct: 218 VVMYTGLIDSLCREGKVKKATQVMDKMMER-----GLEPNVVTYNVLINSMCKEGSVKEA 272

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGL-----------TP 172
             +  +M +          G  +D++  +    G S V+ +    GL            P
Sbjct: 273 MSLRNNMLEK---------GVALDAVTYNTLITGLSGVLEMDEAMGLLEEMIHGETMVEP 323

Query: 173 SLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVL 232
           ++V++NS++HGLCK G   +A+Q+ +   + G   +  T+ +L+ GL     ++KA +++
Sbjct: 324 NVVTFNSVIHGLCKTGRMRQAFQVRDMMAENGCACNLVTFNLLIGGLLRVHKVKKAMELM 383

Query: 233 QFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKM 292
             M S                                   +  +PD  T + +INGFCKM
Sbjct: 384 DEMAS-----------------------------------SGLEPDSFTYSILINGFCKM 408

Query: 293 GRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIV 352
            +++ A  +L+ M       P+ V +  ++  L   G +++A N   ++   +     +V
Sbjct: 409 WQVDRAESLLSKMRRDGI-EPELVHYIPLLAALCEQGMMEQARNFFDEM--HKNCKLDVV 465

Query: 353 TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI 412
            Y+ ++ G  RLR  + A+E    ML  G++ DS TY+++I+    S  L  A+R    +
Sbjct: 466 AYSTMIHGACRLRDRKSAEEFLKHMLDEGLIPDSVTYSMLINMFANSGDLGAAERVLKQM 525

Query: 413 VWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELV 448
                + D  V+ ++IKG    G   + +  + E+ 
Sbjct: 526 TASGFVPDVAVFDSLIKGYGAKGDTEKVLELIREMT 561


>gi|147780655|emb|CAN66818.1| hypothetical protein VITISV_004776 [Vitis vinifera]
          Length = 1037

 Score =  209 bits (531), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 144/538 (26%), Positives = 246/538 (45%), Gaps = 38/538 (7%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C   +V EA      M++ G  PN+V+Y +LI+GY   G+++ A  V   M   GV
Sbjct: 233 VNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGV 292

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             N +TY++L++G  +   ++ A     K+   M+EE  L  +  A+  L+D  CR G +
Sbjct: 293 SRNVVTYTLLIKGYCKQCKMDEAE----KVLRGMQEEAALVPDERAYGVLIDGYCRTGKI 348

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           ++  R+ ++M +       F C  +I+  C+ G  H A  V+  M    L P   SYN++
Sbjct: 349 DDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTL 408

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G C+ G    A+ L ++ +Q G  P+  TY  L++GLC     + A ++   M+    
Sbjct: 409 LDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKXGV 468

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                  +  L  L  ++N      +   +L        IT NT+I+G CKMG++ EA +
Sbjct: 469 APDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEE 528

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           + + M     C+PD +T+ T+I G      + +A   +   M +   SP I  YN+++ G
Sbjct: 529 IFDKM-KDLGCSPDGITYRTLIDGYCKASNVGQAFK-VKGAMEREXISPSIEMYNSLISG 586

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           LF+ RR+ E  ++   M   G+  +  TY  +IDG C+   LD+A   + ++       +
Sbjct: 587 LFKSRRLVEXTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSAN 646

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSG----------------------------- 451
             + + M+ GL R G+I EA   + ++VD G                             
Sbjct: 647 IIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDHECFLKSDIRYAAIQKIADSLDESC 706

Query: 452 ---VTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
              + PN + YN+ I G CK     +A +    +   G  PD  T+  L   +   GN
Sbjct: 707 KTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGN 764



 Score =  204 bits (520), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 144/563 (25%), Positives = 255/563 (45%), Gaps = 79/563 (14%)

Query: 5   CGLSRVGEAHKLFFDMKSRGH-VPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           C   ++ EA K+   M+     VP+  +Y  LI GYCRTG++D A ++ DEM   G+  N
Sbjct: 307 CKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTN 366

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKL--WERMKEEEDLSVNNAAFANLVDSLCREGYVN 121
               + L+ G  +  ++  A  ++ ++  W       +L  ++ ++  L+D  CREG+ +
Sbjct: 367 LFICNSLINGYCKRGEIHEAEGVITRMVDW-------NLKPDSYSYNTLLDGYCREGHTS 419

Query: 122 EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRK-------------- 167
           E F + + M Q            ++  LCR G    A ++ ++M K              
Sbjct: 420 EAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKXGVAPDEVGYSTLL 479

Query: 168 ---------------------RGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL 206
                                RG T S +++N+++ GLCK G  + A ++ ++    G  
Sbjct: 480 DGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCS 539

Query: 207 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 266
           P   TY+ L++G C  S++ +A KV   M  +       + N  +  L   +   E  ++
Sbjct: 540 PDGITYRTLIDGYCKASNVGQAFKVKGAMEREXISPSIEMYNSLISGLFKSRRLVEXTDL 599

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
           L  M      P+++T   +I+G+CK G +++A     +M      A + +  +T++ GL 
Sbjct: 600 LTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSA-NIIICSTMVSGLY 658

Query: 327 NVGRIQEALNLLYQVMPQRGYSP--------------------------------GIVTY 354
            +GRI EA NLL Q M   G+ P                                  + Y
Sbjct: 659 RLGRIDEA-NLLMQKMVDHGFFPDHECFLKSDIRYAAIQKIADSLDESCKTFLLPNNIVY 717

Query: 355 NAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVW 414
           N  + GL +  +V++A+  F+ +   G V D+ TY  +I G   +  +DEA R  D+++ 
Sbjct: 718 NIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLR 777

Query: 415 PSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKRE 474
              + +   Y A+I GLC+S  +  A    ++L   G+ PN+V YN +IDG CK+     
Sbjct: 778 RGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDA 837

Query: 475 AYQILREMRKNGLNPDAVTWRIL 497
           A+++  +M + G++P  VT+  L
Sbjct: 838 AFKLKDKMIEEGISPSVVTYSAL 860



 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 134/506 (26%), Positives = 224/506 (44%), Gaps = 39/506 (7%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C      EA  L   M   G  P V++Y TL+ G CR G  D A +++  M   GV
Sbjct: 409 LDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKXGV 468

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ + YS L+ G+ +  + E A+ L   +  R       + +   F  ++  LC+ G +
Sbjct: 469 APDEVGYSTLLDGLFKMENFEGASTLWKDILAR-----GFTKSRITFNTMISGLCKMGKM 523

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E   I + M       +      +ID  C++     A +V   M +  ++PS+  YNS+
Sbjct: 524 VEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREXISPSIEMYNSL 583

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GL K    +    LL E    G  P+  TY  L++G C E  L+KA      M     
Sbjct: 584 ISGLFKSRRLVEXTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGL 643

Query: 241 VDRTRICNIYLRAL--------------------------CLIKNPTELLNV--LVFMLQ 272
                IC+  +  L                          C +K+      +  +   L 
Sbjct: 644 SANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDHECFLKSDIRYAAIQKIADSLD 703

Query: 273 TQCQ----PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNV 328
             C+    P+ I  N  I G CK G++++A +  + M++ K   PD  T+ T+I G    
Sbjct: 704 ESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFS-MLSLKGFVPDNFTYCTLIHGYSAA 762

Query: 329 GRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTT 388
           G + EA  L  +++ +RG  P IVTYNA++ GL +   V+ A+ +F+ +   G+  +  T
Sbjct: 763 GNVDEAFRLRDEML-RRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVT 821

Query: 389 YAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELV 448
           Y  +IDG C+   +D A +  D ++          Y+A+I GLC+ G I  ++  L +++
Sbjct: 822 YNTLIDGYCKIGNMDAAFKLKDKMIEEGISPSVVTYSALINGLCKHGDIERSMKLLNQMI 881

Query: 449 DSGVTPNIVCYNVVIDGACKLSMKRE 474
            +GV   ++ Y  ++ G  K S   E
Sbjct: 882 KAGVDSKLIEYCTLVQGGFKTSNYNE 907



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 105/382 (27%), Positives = 197/382 (51%), Gaps = 3/382 (0%)

Query: 109 NLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKR 168
           +L+++L + G  +    + + M +   V + F    M+++ C+ G+   A+  V  M   
Sbjct: 196 SLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENL 255

Query: 169 GLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKA 228
           G+ P++V+Y+S+++G    G    A  +L+   + G   +  TY +L++G C +  +++A
Sbjct: 256 GVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEA 315

Query: 229 RKVLQFMLSKKD-VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVIN 287
            KVL+ M  +   V   R   + +   C      + + +L  ML+   + ++   N++IN
Sbjct: 316 EKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLIN 375

Query: 288 GFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGY 347
           G+CK G I EA  V+  MV      PD+ ++ T++ G    G   EA NL  +++ Q G 
Sbjct: 376 GYCKRGEIHEAEGVITRMVDWNL-KPDSYSYNTLLDGYCREGHTSEAFNLCDKML-QEGI 433

Query: 348 SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKR 407
            P ++TYN +L+GL R+   ++A ++++ M+  GV  D   Y+ ++DGL +    + A  
Sbjct: 434 EPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKXGVAPDEVGYSTLLDGLFKMENFEGAST 493

Query: 408 FWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGAC 467
            W DI+          +  MI GLC+ GK+ EA     ++ D G +P+ + Y  +IDG C
Sbjct: 494 LWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYC 553

Query: 468 KLSMKREAYQILREMRKNGLNP 489
           K S   +A+++   M +  ++P
Sbjct: 554 KASNVGQAFKVKGAMEREXISP 575



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 103/406 (25%), Positives = 190/406 (46%), Gaps = 14/406 (3%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC + ++ EA ++F  MK  G  P+ ++Y TLI GYC+   +  A+KV   M    + P+
Sbjct: 517 LCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREXISPS 576

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
              Y+ L+ G+ ++R +     L+ ++  R      L+ N   +  L+D  C+EG +++ 
Sbjct: 577 IEMYNSLISGLFKSRRLVEXTDLLTEMGIR-----GLTPNIVTYGALIDGWCKEGMLDKA 631

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           F    +M +         C  M+  L R GR   A+ ++  M   G  P    +   +  
Sbjct: 632 FSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPD---HECFLKS 688

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV-- 241
             ++    +    L+E  +   LP+   Y + + GLC    ++ AR+    MLS K    
Sbjct: 689 DIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFS-MLSLKGFVP 747

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
           D    C + +       N  E   +   ML+    P+++T N +ING CK   ++ A ++
Sbjct: 748 DNFTYCTL-IHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRL 806

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
            + +   K   P+ VT+ T+I G   +G +  A  L  + M + G SP +VTY+A++ GL
Sbjct: 807 FHKL-HQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDK-MIEEGISPSVVTYSALINGL 864

Query: 362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKR 407
            +   +E + ++ N M+  GV +    Y  ++ G  +++  +E  +
Sbjct: 865 CKHGDIERSMKLLNQMIKAGVDSKLIEYCTLVQGGFKTSNYNEMSK 910



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 130/231 (56%), Gaps = 3/231 (1%)

Query: 270 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG 329
           M++    PDV  ++ ++N FCK G+++EA   +  M       P+ VT+ ++I G +++G
Sbjct: 217 MIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKM-ENLGVEPNIVTYHSLINGYVSLG 275

Query: 330 RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG-IGVVADSTT 388
            ++ A  +L + M ++G S  +VTY  +++G  +  +++EA++V   M     +V D   
Sbjct: 276 DVEAAKGVL-KFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERA 334

Query: 389 YAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELV 448
           Y ++IDG C + ++D+A R  D+++      + ++  ++I G C+ G+IHEA   +  +V
Sbjct: 335 YGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMV 394

Query: 449 DSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
           D  + P+   YN ++DG C+     EA+ +  +M + G+ P  +T+  L K
Sbjct: 395 DWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLK 445



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 62/269 (23%), Positives = 117/269 (43%), Gaps = 27/269 (10%)

Query: 232 LQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQ-CQPDVITLNTVINGFC 290
           L F+ S   VD        LR L L  NPT  L    F+ + Q  +P+V +   +++   
Sbjct: 62  LNFVFSDDIVDAV------LRNLRL--NPTASLGFFQFVSKQQNFRPNVKSYCKLVHILS 113

Query: 291 KMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG 350
           +    +E    LN +V       D   F           R     + L  V  +  +SP 
Sbjct: 114 RGRMYDETRAYLNQLV-------DLCKFKD---------RGNVIWDELVGVYREFAFSPT 157

Query: 351 IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD 410
           +  ++ +L+        + A  VF+ M   G +    +   +++ L ++ +   A   + 
Sbjct: 158 V--FDMILKVYVEKGLTKNALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGETHTAHYVYQ 215

Query: 411 DIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLS 470
            ++    + D ++ + M+   C+ GK+ EA  F+ ++ + GV PNIV Y+ +I+G   L 
Sbjct: 216 QMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLG 275

Query: 471 MKREAYQILREMRKNGLNPDAVTWRILDK 499
               A  +L+ M + G++ + VT+ +L K
Sbjct: 276 DVEAAKGVLKFMSEKGVSRNVVTYTLLIK 304


>gi|357111070|ref|XP_003557338.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Brachypodium distachyon]
          Length = 878

 Score =  209 bits (531), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 139/529 (26%), Positives = 249/529 (47%), Gaps = 43/529 (8%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R+GEA +LF  M++   VP   +Y T+I GY      D AYK+ + +R  G +P+
Sbjct: 291 LCKAGRLGEAEELFGQMEAERDVPCAYAYNTMIMGYGSAERFDDAYKLLERLRERGCIPS 350

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            ++++ ++  + + R V+ A      L++ MK  +D   N + +  ++D LC  G VNE 
Sbjct: 351 VVSFNSILTCLGKKRKVDEA----LTLFDVMK--KDAKPNISTYNIIIDMLCMAGRVNEA 404

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           ++I ++M          +   M+D LC++ +   A R+     +RG  P+ V+Y S++ G
Sbjct: 405 YKIRDEMELAGLFPNLLSVNIMVDRLCKANQLEEAHRIFESASERGCNPNSVTYCSLIDG 464

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLC-------------------GESD 224
           L K G    AY+L E+ +  G+  +   Y  L+                       G  D
Sbjct: 465 LGKKGKIDDAYRLFEKMLDAGHDANPIIYTSLIRNFFMHGRKEDGHKIYKEMIRRGGRPD 524

Query: 225 L----------------EKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLV 268
           L                EK R + + M S   +   R  +I +  L       E  N+  
Sbjct: 525 LTLLNTYMDCVFKAGEVEKGRAIFEDMKSFGFLPDVRSYSILIHGLTKAGQARETSNIFQ 584

Query: 269 FMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNV 328
            M Q     D    N V++G CK G++++A +VL +M   K   P   T+ +I+ GL  +
Sbjct: 585 AMSQQGFALDARAYNAVVDGLCKSGKVDKAYEVLEEMKV-KHVHPTVATYGSIVDGLAKI 643

Query: 329 GRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTT 388
            R+ EA  +L++    +G    ++ Y++++ G  ++ R++EA  +   M+  G+  +  T
Sbjct: 644 DRLDEAY-MLFEEAKSKGIELNVILYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYT 702

Query: 389 YAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELV 448
           +  ++D L ++ ++DEA   +  +       + Y Y+ +I GLCR  K ++A  F  E+ 
Sbjct: 703 WNSLMDALVKTEEIDEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQ 762

Query: 449 DSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
             G+ PN+V Y  +I G  K+    +AY +    + NG  PD+ ++  L
Sbjct: 763 KQGLIPNVVTYTTMISGLAKVGNITDAYSLFERFKTNGGIPDSASFNAL 811



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 123/478 (25%), Positives = 224/478 (46%), Gaps = 8/478 (1%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           +V EA  LF D+  +   PN+ +Y  +I   C  G ++ AYK+ DEM   G+ PN L+ +
Sbjct: 366 KVDEALTLF-DVMKKDAKPNISTYNIIIDMLCMAGRVNEAYKIRDEMELAGLFPNLLSVN 424

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
           ++V  + +   +E A+ +     ER       + N+  + +L+D L ++G +++ +R+ E
Sbjct: 425 IMVDRLCKANQLEEAHRIFESASER-----GCNPNSVTYCSLIDGLGKKGKIDDAYRLFE 479

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
            M              +I +    GR     ++   M +RG  P L   N+ +  + K G
Sbjct: 480 KMLDAGHDANPIIYTSLIRNFFMHGRKEDGHKIYKEMIRRGGRPDLTLLNTYMDCVFKAG 539

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
              +   + E+   FG+LP   +Y +L+ GL       +   + Q M  +      R  N
Sbjct: 540 EVEKGRAIFEDMKSFGFLPDVRSYSILIHGLTKAGQARETSNIFQAMSQQGFALDARAYN 599

Query: 249 IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 308
             +  LC      +   VL  M      P V T  ++++G  K+ R++EA  +  +    
Sbjct: 600 AVVDGLCKSGKVDKAYEVLEEMKVKHVHPTVATYGSIVDGLAKIDRLDEAYMLFEE-AKS 658

Query: 309 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE 368
           K    + + ++++I G   VGRI EA  +L ++M ++G +P + T+N+++  L +   ++
Sbjct: 659 KGIELNVILYSSLIDGFGKVGRIDEAYLILEEMM-KKGLTPNVYTWNSLMDALVKTEEID 717

Query: 369 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI 428
           EA   F  M  +    ++ TY+I+I+GLC   + ++A  FW ++     I +   Y  MI
Sbjct: 718 EALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLIPNVVTYTTMI 777

Query: 429 KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG 486
            GL + G I +A         +G  P+   +N +I+G    +   EAYQ+  E R  G
Sbjct: 778 SGLAKVGNITDAYSLFERFKTNGGIPDSASFNALIEGMSNANRPMEAYQVFEETRLRG 835



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 124/494 (25%), Positives = 231/494 (46%), Gaps = 10/494 (2%)

Query: 13  AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVR 72
           A +L   M+  G+  +V  +TTL+    R G+M+ A  + DE++   + P+ + Y+V + 
Sbjct: 195 ALELLRQMQDVGYEVSVPLFTTLVRALAREGQMEPALALVDEVKGSCLEPDIVLYNVCID 254

Query: 73  GVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQ 132
              +   V+ A    +K +  +K    L  ++ ++ ++V  LC+ G + E   +   M  
Sbjct: 255 CFGKAGSVDMA----WKFFHELKAH-GLRPDDVSYTSMVWVLCKAGRLGEAEELFGQMEA 309

Query: 133 GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMR 192
            + V   +A   MI     + R   A +++  +R+RG  PS+VS+NSI+  L K      
Sbjct: 310 ERDVPCAYAYNTMIMGYGSAERFDDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDE 369

Query: 193 AYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLR 252
           A  L +  ++    P+  TY ++++ LC    + +A K+   M            NI + 
Sbjct: 370 ALTLFDV-MKKDAKPNISTYNIIIDMLCMAGRVNEAYKIRDEMELAGLFPNLLSVNIMVD 428

Query: 253 ALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV-AGKFC 311
            LC      E   +     +  C P+ +T  ++I+G  K G+I++A ++   M+ AG   
Sbjct: 429 RLCKANQLEEAHRIFESASERGCNPNSVTYCSLIDGLGKKGKIDDAYRLFEKMLDAGHDA 488

Query: 312 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK 371
            P  + +T++I      GR ++  + +Y+ M +RG  P +   N  +  +F+   VE+ +
Sbjct: 489 NP--IIYTSLIRNFFMHGRKEDG-HKIYKEMIRRGGRPDLTLLNTYMDCVFKAGEVEKGR 545

Query: 372 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 431
            +F  M   G + D  +Y+I+I GL ++ Q  E    +  +       D   Y A++ GL
Sbjct: 546 AIFEDMKSFGFLPDVRSYSILIHGLTKAGQARETSNIFQAMSQQGFALDARAYNAVVDGL 605

Query: 432 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 491
           C+SGK+ +A   L E+    V P +  Y  ++DG  K+    EAY +  E +  G+  + 
Sbjct: 606 CKSGKVDKAYEVLEEMKVKHVHPTVATYGSIVDGLAKIDRLDEAYMLFEEAKSKGIELNV 665

Query: 492 VTWRILDKLHGNRG 505
           + +  L    G  G
Sbjct: 666 ILYSSLIDGFGKVG 679



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 111/414 (26%), Positives = 206/414 (49%), Gaps = 13/414 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D+LC  +++ EAH++F     RG  PN V+Y +LI G  + G++D AY++F++M   G 
Sbjct: 427 VDRLCKANQLEEAHRIFESASERGCNPNSVTYCSLIDGLGKKGKIDDAYRLFEKMLDAGH 486

Query: 61  LPNSLTYSVLVRGVL---RTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCRE 117
             N + Y+ L+R      R  D  +    ++K   R     DL++ N      +D + + 
Sbjct: 487 DANPIIYTSLIRNFFMHGRKEDGHK----IYKEMIRRGGRPDLTLLN----TYMDCVFKA 538

Query: 118 GYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
           G V +   I EDM     + +  +   +I  L ++G+    S +   M ++G      +Y
Sbjct: 539 GEVEKGRAIFEDMKSFGFLPDVRSYSILIHGLTKAGQARETSNIFQAMSQQGFALDARAY 598

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
           N++V GLCK G   +AY++LEE       P+  TY  +V+GL     L++A  + +   S
Sbjct: 599 NAVVDGLCKSGKVDKAYEVLEEMKVKHVHPTVATYGSIVDGLAKIDRLDEAYMLFEEAKS 658

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
           K       + +  +     +    E   +L  M++    P+V T N++++   K   I+E
Sbjct: 659 KGIELNVILYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKTEEIDE 718

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           AL     M   K C+P+  T++ +I GL  V +  +A  + +Q M ++G  P +VTY  +
Sbjct: 719 ALICFQSMKEMK-CSPNTYTYSILINGLCRVQKYNKAF-VFWQEMQKQGLIPNVVTYTTM 776

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDD 411
           + GL ++  + +A  +F      G + DS ++  +I+G+  +N+  EA + +++
Sbjct: 777 ISGLAKVGNITDAYSLFERFKTNGGIPDSASFNALIEGMSNANRPMEAYQVFEE 830



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 94/368 (25%), Positives = 167/368 (45%), Gaps = 42/368 (11%)

Query: 141 ACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEG 200
           AC  ++ +L RS R   A RV+  MR     P   +Y  ++  L +     RA +LL + 
Sbjct: 143 ACAALVATLVRSRRLEDAFRVIGAMRHLKFRPPFSAYTVLIGALAEARQPERALELLRQM 202

Query: 201 IQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNP 260
              GY  S   +  LV  L  E  +E A  +         VD        ++  CL    
Sbjct: 203 QDVGYEVSVPLFTTLVRALAREGQMEPALAL---------VDE-------VKGSCL---- 242

Query: 261 TELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTT 320
                          +PD++  N  I+ F K G ++ A K  +++ A     PD V++T+
Sbjct: 243 ---------------EPDIVLYNVCIDCFGKAGSVDMAWKFFHELKAHGL-RPDDVSYTS 286

Query: 321 IIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI 380
           +++ L   GR+ EA  L  Q+  +R   P    YN ++ G     R ++A ++   +   
Sbjct: 287 MVWVLCKAGRLGEAEELFGQMEAERDV-PCAYAYNTMIMGYGSAERFDDAYKLLERLRER 345

Query: 381 GVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY-VYAAMIKGLCRSGKIHE 439
           G +    ++  ++  L +  ++DEA   +D  V   +   N   Y  +I  LC +G+++E
Sbjct: 346 GCIPSVVSFNSILTCLGKKRKVDEALTLFD--VMKKDAKPNISTYNIIIDMLCMAGRVNE 403

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW-RILD 498
           A     E+  +G+ PN++  N+++D  CK +   EA++I     + G NP++VT+  ++D
Sbjct: 404 AYKIRDEMELAGLFPNLLSVNIMVDRLCKANQLEEAHRIFESASERGCNPNSVTYCSLID 463

Query: 499 KLHGNRGN 506
            L G +G 
Sbjct: 464 GL-GKKGK 470



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 79/164 (48%), Gaps = 6/164 (3%)

Query: 334 ALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVI 393
           AL  + + M   GY        A++  L R RR+E+A  V   M  +      + Y ++I
Sbjct: 124 ALEKVLEEMSHLGYGLPNPACAALVATLVRSRRLEDAFRVIGAMRHLKFRPPFSAYTVLI 183

Query: 394 DGLCESNQLDEA---KRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 450
             L E+ Q + A    R   D+ +  ++    ++  +++ L R G++  A+  + E+  S
Sbjct: 184 GALAEARQPERALELLRQMQDVGYEVSVP---LFTTLVRALAREGQMEPALALVDEVKGS 240

Query: 451 GVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
            + P+IV YNV ID   K      A++   E++ +GL PD V++
Sbjct: 241 CLEPDIVLYNVCIDCFGKAGSVDMAWKFFHELKAHGLRPDDVSY 284



 Score = 43.5 bits (101), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 3/97 (3%)

Query: 4   LCGLSRVG---EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           + GL++VG   +A+ LF   K+ G +P+  S+  LI G         AY+VF+E R  G 
Sbjct: 777 ISGLAKVGNITDAYSLFERFKTNGGIPDSASFNALIEGMSNANRPMEAYQVFEETRLRGC 836

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEE 97
             N  T   L+  + +T  +E+A ++   L E  K +
Sbjct: 837 RLNVKTCISLLDALNKTECLEQAAIVGAVLSEIAKSQ 873


>gi|346703131|emb|CBX25230.1| hypothetical_protein [Oryza brachyantha]
          Length = 746

 Score =  209 bits (531), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 131/464 (28%), Positives = 231/464 (49%), Gaps = 7/464 (1%)

Query: 24  GHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERA 83
           G   + V Y  L++      +M +   V+ EM   G+ P+ +T++ L++ + R   V R 
Sbjct: 145 GIQADTVVYNHLLNVLVEGSKMKLLETVYSEMGERGIKPDVVTFNTLMKALCRAHQV-RT 203

Query: 84  NVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACG 143
            VLM    E M     ++ +   F  L+     EG +    R+   M +      +    
Sbjct: 204 AVLML---EEMSSS-GVAPDETTFTTLMQGFVEEGSIKAALRVKARMLEMGCSPTKVTVN 259

Query: 144 HMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQF 203
            +I+  C+ GR   A   +      G  P  ++YN+ V+GLC++G    A ++++  +Q 
Sbjct: 260 VLINGYCKLGRVEDALGYIQQEIANGFEPDQITYNTFVNGLCQNGHVGHALKVMDVMVQE 319

Query: 204 GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTEL 263
           G+ P   TY ++V  LC    LE+A+ +L  M+ +  +      N  + ALC      E 
Sbjct: 320 GHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNTLIVALCSGNRLEEA 379

Query: 264 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF 323
           L++   +      PDV T N +IN  CK+G  + AL++  +M +   C PD VT+ T+I 
Sbjct: 380 LDLARQVTLKGLSPDVYTFNILINALCKVGDPQLALRLFEEMKSSG-CTPDEVTYNTLID 438

Query: 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 383
            L ++G++ +AL+LL + M   G     VTYN ++ GL +  R+EEA+EVF+ M   G+ 
Sbjct: 439 NLCSLGKLGKALDLLKE-MESAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGIS 497

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
            ++ T+  +IDGLC+  ++D+A +    ++      +N  Y +++   C+ G I +A   
Sbjct: 498 RNAITFNTLIDGLCKDKRIDDANQLISQMISEGLQPNNITYNSILTHYCKQGDIKKAADI 557

Query: 444 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
           L  +  +G   ++V Y  +I+G CK    + A ++LR MR  G+
Sbjct: 558 LQTMTANGFEVDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGM 601



 Score =  207 bits (526), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 133/491 (27%), Positives = 247/491 (50%), Gaps = 9/491 (1%)

Query: 8   SRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTY 67
           S++     ++ +M  RG  P+VV++ TL+   CR  ++  A  + +EM   GV P+  T+
Sbjct: 164 SKMKLLETVYSEMGERGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSSGVAPDETTF 223

Query: 68  SVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF-RI 126
           + L++G +    ++ A  +  ++ E       ++VN      L++  C+ G V +    I
Sbjct: 224 TTLMQGFVEEGSIKAALRVKARMLEMGCSPTKVTVNV-----LINGYCKLGRVEDALGYI 278

Query: 127 AEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK 186
            +++  G    ++      ++ LC++G    A +V+ VM + G  P + +YN +V+ LCK
Sbjct: 279 QQEIANGFE-PDQITYNTFVNGLCQNGHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCK 337

Query: 187 HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRI 246
           +G    A  +L + ++ G LP   T+  L+  LC  + LE+A  + + +  K        
Sbjct: 338 NGQLEEAKGILNQMVERGCLPDITTFNTLIVALCSGNRLEEALDLARQVTLKGLSPDVYT 397

Query: 247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV 306
            NI + ALC + +P   L +   M  + C PD +T NT+I+  C +G++ +AL +L +M 
Sbjct: 398 FNILINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKEME 457

Query: 307 AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 366
           +   C    VT+ TII GL    RI+EA  +  Q M  +G S   +T+N ++ GL + +R
Sbjct: 458 SAG-CPRSTVTYNTIIDGLCKKMRIEEAEEVFDQ-MDLQGISRNAITFNTLIDGLCKDKR 515

Query: 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAA 426
           +++A ++ + M+  G+  ++ TY  ++   C+   + +A      +       D   Y  
Sbjct: 516 IDDANQLISQMISEGLQPNNITYNSILTHYCKQGDIKKAADILQTMTANGFEVDVVTYGT 575

Query: 427 MIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG 486
           +I GLC++G+   A+  L  +   G+      YN VI    + +  R+A  + REM + G
Sbjct: 576 LINGLCKAGRTQVALKLLRGMRIKGMRATPKAYNPVIQSLFRRNNTRDAMNLFREMTEVG 635

Query: 487 LNPDAVTWRIL 497
             PDA T++I+
Sbjct: 636 EPPDAFTYKIV 646



 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 134/508 (26%), Positives = 236/508 (46%), Gaps = 8/508 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M  LC   +V  A  +  +M S G  P+  ++TTL+ G+   G +  A +V   M   G 
Sbjct: 192 MKALCRAHQVRTAVLMLEEMSSSGVAPDETTFTTLMQGFVEEGSIKAALRVKARMLEMGC 251

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P  +T +VL+ G  +   VE A   + +      E + ++ N       V+ LC+ G+V
Sbjct: 252 SPTKVTVNVLINGYCKLGRVEDALGYIQQEIANGFEPDQITYN-----TFVNGLCQNGHV 306

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
               ++ + M Q     + F    +++ LC++G+   A  ++  M +RG  P + ++N++
Sbjct: 307 GHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNTL 366

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +  LC       A  L  +    G  P  +T+ +L+  LC   D + A ++ + M S   
Sbjct: 367 IVALCSGNRLEEALDLARQVTLKGLSPDVYTFNILINALCKVGDPQLALRLFEEMKSSGC 426

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                  N  +  LC +    + L++L  M    C    +T NT+I+G CK  RIEEA +
Sbjct: 427 TPDEVTYNTLIDNLCSLGKLGKALDLLKEMESAGCPRSTVTYNTIIDGLCKKMRIEEAEE 486

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           V + M   +  + +A+TF T+I GL    RI +A  L+ Q++ + G  P  +TYN++L  
Sbjct: 487 VFDQMDL-QGISRNAITFNTLIDGLCKDKRIDDANQLISQMISE-GLQPNNITYNSILTH 544

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
             +   +++A ++   M   G   D  TY  +I+GLC++ +   A +    +        
Sbjct: 545 YCKQGDIKKAADILQTMTANGFEVDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGMRAT 604

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMK-REAYQIL 479
              Y  +I+ L R     +A++   E+ + G  P+   Y +V  G C+     REA+  L
Sbjct: 605 PKAYNPVIQSLFRRNNTRDAMNLFREMTEVGEPPDAFTYKIVFRGLCRGGGSIREAFDFL 664

Query: 480 REMRKNGLNPDAVTWRILDKLHGNRGND 507
            EM   G  P+  ++R+L +   N G D
Sbjct: 665 LEMVDKGFIPEFSSFRMLAEGLLNLGMD 692



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 87/298 (29%), Positives = 147/298 (49%), Gaps = 6/298 (2%)

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
           GIQ   +   H   VLVEG    S ++    V   M  +         N  ++ALC    
Sbjct: 145 GIQADTVVYNHLLNVLVEG----SKMKLLETVYSEMGERGIKPDVVTFNTLMKALCRAHQ 200

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
               + +L  M  +   PD  T  T++ GF + G I+ AL+V   M+    C+P  VT  
Sbjct: 201 VRTAVLMLEEMSSSGVAPDETTFTTLMQGFVEEGSIKAALRVKARMLEMG-CSPTKVTVN 259

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
            +I G   +GR+++AL  + Q +   G+ P  +TYN  + GL +   V  A +V + M+ 
Sbjct: 260 VLINGYCKLGRVEDALGYIQQEIAN-GFEPDQITYNTFVNGLCQNGHVGHALKVMDVMVQ 318

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
            G   D  TY IV++ LC++ QL+EAK   + +V    + D   +  +I  LC   ++ E
Sbjct: 319 EGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNTLIVALCSGNRLEE 378

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           A+    ++   G++P++  +N++I+  CK+   + A ++  EM+ +G  PD VT+  L
Sbjct: 379 ALDLARQVTLKGLSPDVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTL 436



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 99/379 (26%), Positives = 177/379 (46%), Gaps = 12/379 (3%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC  +R+ EA  L   +  +G  P+V ++  LI+  C+ G+  +A ++F+EM+  G  P+
Sbjct: 370 LCSGNRLEEALDLARQVTLKGLSPDVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPD 429

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY+ L+  +     + +A  L+ ++     E      +   +  ++D LC++  + E 
Sbjct: 430 EVTYNTLIDNLCSLGKLGKALDLLKEM-----ESAGCPRSTVTYNTIIDGLCKKMRIEEA 484

Query: 124 FRIAEDMP-QGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
             + + M  QG S N       +ID LC+  R   A++++  M   GL P+ ++YNSI+ 
Sbjct: 485 EEVFDQMDLQGISRNA-ITFNTLIDGLCKDKRIDDANQLISQMISEGLQPNNITYNSILT 543

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
             CK G   +A  +L+     G+     TY  L+ GLC     + A K+L+ M  K    
Sbjct: 544 HYCKQGDIKKAADILQTMTANGFEVDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGMRA 603

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK-MGRIEEALKV 301
             +  N  +++L    N  + +N+   M +    PD  T   V  G C+  G I EA   
Sbjct: 604 TPKAYNPVIQSLFRRNNTRDAMNLFREMTEVGEPPDAFTYKIVFRGLCRGGGSIREAFDF 663

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
           L +MV   F  P+  +F  +  GLLN+G     +  +  ++ +       V+    +RG 
Sbjct: 664 LLEMVDKGFI-PEFSSFRMLAEGLLNLGMDDYFIRAIEIIIEKADLGDSDVS---AIRGY 719

Query: 362 FRLRRVEEAKEVFNCMLGI 380
            ++R+  +A   F  +L I
Sbjct: 720 LKIRKFYDALATFGRLLKI 738


>gi|168049795|ref|XP_001777347.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671323|gb|EDQ57877.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 621

 Score =  209 bits (531), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 138/495 (27%), Positives = 245/495 (49%), Gaps = 7/495 (1%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           EA +L  +M+  G VP+V +Y  LI    + G +  A+ +F EMR  G +P++ TY+ L+
Sbjct: 97  EALRLLAEMRDNGCVPDVRTYNCLISTLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLI 156

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP 131
            G+ +    ++A     +L E M E      +   +++L+  L ++G   + F++ ++M 
Sbjct: 157 YGLGKVGRSQKA----MELLEEM-ERHGCPPDVMTYSSLITGLGKDGETVKAFKLFQEMK 211

Query: 132 QGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCM 191
           +     +      ++D+L ++GR   A  ++  M++RG+ P +V+YN+++ G  K G  +
Sbjct: 212 RRGRKPDSITFTALMDALGKAGRVDDALELLDEMKERGVKPGVVTYNALIAGFGKVGDLV 271

Query: 192 RAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYL 251
            AY LL+E  + G  P   TY  L+ GL   S L++A +VL+ M  +     T   N  +
Sbjct: 272 EAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLI 331

Query: 252 RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC 311
             L       +   +   M    C PDV+T +T+I    K  R+E A  +  +M +    
Sbjct: 332 NGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESACVLFEEMESVGI- 390

Query: 312 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK 371
            PD  T+ +II  L   G++ +A + L+  M  +G SP ++TYNA L  L R  R +EA+
Sbjct: 391 QPDLFTYCSIITVLGKAGQVDDA-DRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEAR 449

Query: 372 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 431
           ++F  M   G++ D  TY  ++ GL ++ ++D+A     +++      D+  +   ++ L
Sbjct: 450 KIFEDMKESGLLPDVATYDALLLGLSKTKEVDDACGLLKELIEQGCAFDSLKFDECLEIL 509

Query: 432 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 491
              G + EA   L      G+ P    YN +ID   K     EA+  L ++++ G  PD 
Sbjct: 510 TSWGNVDEAHELLQFANSKGLWPGASSYNALIDALAKAGRVSEAFNTLEDLKEQGGKPDI 569

Query: 492 VTWRILDKLHGNRGN 506
           V++  L    G  G 
Sbjct: 570 VSYSSLISALGQTGQ 584



 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 140/514 (27%), Positives = 254/514 (49%), Gaps = 26/514 (5%)

Query: 4   LCGLSRVG---EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           L  L++ G   EA  LF ++K+    P+VVSY+ LI+   R G+ + A +V  EM+  G 
Sbjct: 16  LNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEAALEVVAEMQAKGC 75

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEE---EDLSVNNAAFANLVDSLCRE 117
            PN  TY+ LV  + +    + A     +L   M++     D+   N     L+ +L + 
Sbjct: 76  KPNLWTYNTLVDCLGKAGQFDEA----LRLLAEMRDNGCVPDVRTYNC----LISTLGKA 127

Query: 118 GYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
           G ++E F +  +M +   V + F    +I  L + GR+  A  ++  M + G  P +++Y
Sbjct: 128 GRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMTY 187

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
           +S++ GL K G  ++A++L +E  + G  P   T+  L++ L     ++ A ++L  M  
Sbjct: 188 SSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDEMKE 247

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
           +         N  +     + +  E  N+L  M +  C+PDV+T + +I G  K  +++E
Sbjct: 248 RGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDE 307

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           A +VL  M   + C PD +T+ T+I GL   G + +A   L+  M  +G +P +VTY+ +
Sbjct: 308 ACQVLKKMEK-EGCPPDTITYNTLINGLGKAGLLNDA-GRLFDRMKSKGCNPDVVTYSTL 365

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 417
           +  L +  RVE A  +F  M  +G+  D  TY  +I  L ++ Q+D+A R + ++     
Sbjct: 366 ITALGKAARVESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGL 425

Query: 418 IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQ 477
             D   Y A +  L R G+  EA     ++ +SG+ P++  Y+ ++ G  K     +A  
Sbjct: 426 SPDVITYNAFLNSLGRGGRFKEARKIFEDMKESGLLPDVATYDALLLGLSKTKEVDDACG 485

Query: 478 ILREMRKNGLNPDAV----------TWRILDKLH 501
           +L+E+ + G   D++          +W  +D+ H
Sbjct: 486 LLKELIEQGCAFDSLKFDECLEILTSWGNVDEAH 519



 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 129/471 (27%), Positives = 240/471 (50%), Gaps = 7/471 (1%)

Query: 27  PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVL 86
           PNVV+Y +L++   + G+ + A  +F+E++     P+ ++YS L+  + R    E A  +
Sbjct: 7   PNVVTYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEAALEV 66

Query: 87  MFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMI 146
           + ++     + +    N   +  LVD L + G  +E  R+  +M     V +      +I
Sbjct: 67  VAEM-----QAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLI 121

Query: 147 DSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL 206
            +L ++GR   A  +   MR+RG  P   +YNS+++GL K G   +A +LLEE  + G  
Sbjct: 122 STLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCP 181

Query: 207 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 266
           P   TY  L+ GL  + +  KA K+ Q M  +     +      + AL       + L +
Sbjct: 182 PDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALEL 241

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
           L  M +   +P V+T N +I GF K+G + EA  +L++M     C PD VT++ +I GL+
Sbjct: 242 LDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNG-CKPDVVTYSCLITGLI 300

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
              ++ EA  +L + M + G  P  +TYN ++ GL +   + +A  +F+ M   G   D 
Sbjct: 301 KASQLDEACQVLKK-MEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDV 359

Query: 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE 446
            TY+ +I  L ++ +++ A   ++++       D + Y ++I  L ++G++ +A     E
Sbjct: 360 VTYSTLITALGKAARVESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSE 419

Query: 447 LVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           +   G++P+++ YN  ++   +    +EA +I  +M+++GL PD  T+  L
Sbjct: 420 MRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKESGLLPDVATYDAL 470



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 115/394 (29%), Positives = 194/394 (49%), Gaps = 2/394 (0%)

Query: 101 SVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASR 160
           S N   + +L+++L + G   E   + E++   K   +  +   +I+SL R+G+   A  
Sbjct: 6   SPNVVTYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEAALE 65

Query: 161 VVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLC 220
           VV  M+ +G  P+L +YN++V  L K G    A +LL E    G +P   TY  L+  L 
Sbjct: 66  VVAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLG 125

Query: 221 GESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVI 280
               L +A  +   M  +  V  T   N  +  L  +    + + +L  M +  C PDV+
Sbjct: 126 KAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVM 185

Query: 281 TLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQ 340
           T +++I G  K G   +A K+  +M   +   PD++TFT ++  L   GR+ +AL LL +
Sbjct: 186 TYSSLITGLGKDGETVKAFKLFQEMKR-RGRKPDSITFTALMDALGKAGRVDDALELLDE 244

Query: 341 VMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN 400
            M +RG  PG+VTYNA++ G  ++  + EA  + + M   G   D  TY+ +I GL +++
Sbjct: 245 -MKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKAS 303

Query: 401 QLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYN 460
           QLDEA +    +       D   Y  +I GL ++G +++A      +   G  P++V Y+
Sbjct: 304 QLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYS 363

Query: 461 VVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
            +I    K +    A  +  EM   G+ PD  T+
Sbjct: 364 TLITALGKAARVESACVLFEEMESVGIQPDLFTY 397



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 117/230 (50%), Gaps = 2/230 (0%)

Query: 277 PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALN 336
           PDV++ + +IN   + G+ E AL+V+ +M A K C P+  T+ T++  L   G+  EAL 
Sbjct: 42  PDVVSYSCLINSLGRAGKWEAALEVVAEMQA-KGCKPNLWTYNTLVDCLGKAGQFDEALR 100

Query: 337 LLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 396
           LL + M   G  P + TYN ++  L +  R+ EA  +F  M   G V D+ TY  +I GL
Sbjct: 101 LLAE-MRDNGCVPDVRTYNCLISTLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGL 159

Query: 397 CESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNI 456
            +  +  +A    +++       D   Y+++I GL + G+  +A     E+   G  P+ 
Sbjct: 160 GKVGRSQKAMELLEEMERHGCPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDS 219

Query: 457 VCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           + +  ++D   K     +A ++L EM++ G+ P  VT+  L    G  G+
Sbjct: 220 ITFTALMDALGKAGRVDDALELLDEMKERGVKPGVVTYNALIAGFGKVGD 269



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 113/217 (52%), Gaps = 17/217 (7%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           +V +A +LF +M+ +G  P+V++Y   ++   R G    A K+F++M+  G+LP+  TY 
Sbjct: 409 QVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKESGLLPDVATYD 468

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
            L+ G+ +T++V+ A  L+ +L E     +  + ++  F   ++ L   G V+E   + +
Sbjct: 469 ALLLGLSKTKEVDDACGLLKELIE-----QGCAFDSLKFDECLEILTSWGNVDEAHELLQ 523

Query: 129 DM------PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
                   P   S N       +ID+L ++GR   A   +  ++++G  P +VSY+S++ 
Sbjct: 524 FANSKGLWPGASSYN------ALIDALAKAGRVSEAFNTLEDLKEQGGKPDIVSYSSLIS 577

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGL 219
            L + G    A++LLEE  + G   S  +Y  LV  L
Sbjct: 578 ALGQTGQIDTAFELLEEMSKRGLKLSPRSYSNLVRKL 614



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 99/188 (52%), Gaps = 1/188 (0%)

Query: 310 FCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEE 369
           F +P+ VT+ +++  L   G+ +EA  LL++ +    ++P +V+Y+ ++  L R  + E 
Sbjct: 4   FPSPNVVTYNSLLNALAKAGQCEEA-QLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEA 62

Query: 370 AKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIK 429
           A EV   M   G   +  TY  ++D L ++ Q DEA R   ++     + D   Y  +I 
Sbjct: 63  ALEVVAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLIS 122

Query: 430 GLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNP 489
            L ++G++ EA     E+ + G  P+   YN +I G  K+   ++A ++L EM ++G  P
Sbjct: 123 TLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPP 182

Query: 490 DAVTWRIL 497
           D +T+  L
Sbjct: 183 DVMTYSSL 190



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 44/72 (61%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D L    RV EA     D+K +G  P++VSY++LI    +TG++D A+++ +EM   G+
Sbjct: 541 IDALAKAGRVSEAFNTLEDLKEQGGKPDIVSYSSLISALGQTGQIDTAFELLEEMSKRGL 600

Query: 61  LPNSLTYSVLVR 72
             +  +YS LVR
Sbjct: 601 KLSPRSYSNLVR 612



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 57/114 (50%), Gaps = 5/114 (4%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ L     V EAH+L     S+G  P   SY  LI    + G +  A+   ++++  G 
Sbjct: 506 LEILTSWGNVDEAHELLQFANSKGLWPGASSYNALIDALAKAGRVSEAFNTLEDLKEQGG 565

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSL 114
            P+ ++YS L+  + +T  ++ A    F+L E M  +  L ++  +++NLV  L
Sbjct: 566 KPDIVSYSSLISALGQTGQIDTA----FELLEEMS-KRGLKLSPRSYSNLVRKL 614


>gi|296083846|emb|CBI24234.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score =  209 bits (531), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 128/490 (26%), Positives = 243/490 (49%), Gaps = 7/490 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   ++        DM+ +G  P+VV+Y TLI+ YCR G ++ A+++ D M   G+
Sbjct: 104 INALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGL 163

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P   TY+ ++ G+ +T    RA  ++ ++ +       +S + A +  L+   CR   +
Sbjct: 164 KPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKI-----GMSPDTATYNILLVECCRNDNM 218

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +  RI ++MP    V +  +   +I  L ++G    A +    M+  GL P  V Y  +
Sbjct: 219 MDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTIL 278

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G C++G    A ++ +E ++ G +    TY  ++ GLC E  L +A ++   M  +  
Sbjct: 279 IGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGV 338

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                     +       N  + + +   M+Q   +PDV+T NT+I+GFCK   +E+  +
Sbjct: 339 FPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNE 398

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           + NDM++ +   P+ +++  +I G  N+G + EA   L+  M ++G+   I+T N +++G
Sbjct: 399 LWNDMISRRI-YPNHISYGILINGYCNMGCVSEAFR-LWDEMVEKGFEATIITCNTIVKG 456

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
             R     +A E  + ML  G+V D  TY  +I+G  +   +D A    + +     + D
Sbjct: 457 YCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPD 516

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              Y  ++ G  R G++ EA   + ++++ GV P+   Y  +I+G    +  +EA+++  
Sbjct: 517 VITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHD 576

Query: 481 EMRKNGLNPD 490
           EM + G  PD
Sbjct: 577 EMLQRGFVPD 586



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 137/535 (25%), Positives = 257/535 (48%), Gaps = 46/535 (8%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           ++ E  + F  +KS+G   ++ +  +L+ G  + G +D+A++++ E+   GV  N  T +
Sbjct: 42  KLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLN 101

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
           +++  + + + +E     +  +     EE+ +  +   +  L+++ CR+G + E F + +
Sbjct: 102 IMINALCKNQKIENTKSFLSDM-----EEKGVFPDVVTYNTLINAYCRQGLLEEAFELMD 156

Query: 129 DMPQGKSVNE-EFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKH 187
            M  GK +    F    +I+ LC++G+   A  V+  M K G++P   +YN ++   C++
Sbjct: 157 SM-SGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRN 215

Query: 188 GGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC 247
              M A ++ +E    G +P   ++  L+  L     L++A K  + M +        I 
Sbjct: 216 DNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIY 275

Query: 248 NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA 307
            I +   C     +E L V   ML+  C  DV+T NT++NG CK   + EA ++  +M  
Sbjct: 276 TILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTE 335

Query: 308 -GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 366
            G F  PD  TFTT+I G    G + +A+ L +++M QR   P +VTYN ++ G  +   
Sbjct: 336 RGVF--PDFYTFTTLINGYSKDGNMNKAVTL-FEMMIQRNLKPDVVTYNTLIDGFCKGSE 392

Query: 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAA 426
           +E+  E++N M+   +  +  +Y I+I+G C    + EA R WD++V             
Sbjct: 393 MEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNT 452

Query: 427 MIKGLCRSGKIHEAVHFLYELV-----------------------------------DSG 451
           ++KG CR+G   +A  FL  ++                                   +SG
Sbjct: 453 IVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSG 512

Query: 452 VTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           + P+++ YNV+++G  +    +EA  I+ +M + G+NPD  T+  L   H  + N
Sbjct: 513 LLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNN 567



 Score =  171 bits (433), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 110/421 (26%), Positives = 207/421 (49%), Gaps = 7/421 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   +   A  +  +M   G  P+  +Y  L+   CR   M  A ++FDEM   GV
Sbjct: 174 INGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGV 233

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P+ +++S L+  + +   +++A     K +  MK    L+ +N  +  L+   CR G +
Sbjct: 234 VPDLVSFSALIGLLSKNGCLDQA----LKYFRDMKNA-GLAPDNVIYTILIGGFCRNGVM 288

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E  ++ ++M +   V +      +++ LC+      A  +   M +RG+ P   ++ ++
Sbjct: 289 SEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTL 348

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++G  K G   +A  L E  IQ    P   TY  L++G C  S++EK  ++   M+S++ 
Sbjct: 349 INGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRI 408

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                   I +   C +   +E   +   M++   +  +IT NT++ G+C+ G   +A +
Sbjct: 409 YPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADE 468

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
            L++M+  K   PD +T+ T+I G +    +  A  L+ + M   G  P ++TYN +L G
Sbjct: 469 FLSNMLL-KGIVPDGITYNTLINGFIKEENMDRAFALVNK-MENSGLLPDVITYNVILNG 526

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
             R  R++EA+ +   M+  GV  D +TY  +I+G    N L EA R  D+++    + D
Sbjct: 527 FSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVPD 586

Query: 421 N 421
           +
Sbjct: 587 D 587



 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 122/477 (25%), Positives = 216/477 (45%), Gaps = 46/477 (9%)

Query: 57  HCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCR 116
           +CG   N L + +LVR  ++ R + R     F    R+ + + L V+  A  +L+  L +
Sbjct: 22  NCG--SNPLVFDLLVRTYVQARKL-REGCEAF----RVLKSKGLCVSINACNSLLGGLVK 74

Query: 117 EGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVS 176
            G+V+  + I +++ +       +    MI++LC++ +       +  M ++G+ P +V+
Sbjct: 75  VGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVT 134

Query: 177 YNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFML 236
           YN++++  C+ G    A++L++     G  P   TY  ++ GLC      +A+ VL  ML
Sbjct: 135 YNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEML 194

Query: 237 SKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIE 296
                  T   NI L   C   N  +   +   M      PD+++ + +I    K G ++
Sbjct: 195 KIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLD 254

Query: 297 EALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
           +ALK   DM      APD V +T +I G    G + EAL +  +++ Q G    +VTYN 
Sbjct: 255 QALKYFRDMKNAGL-APDNVIYTILIGGFCRNGVMSEALKVRDEMLEQ-GCVLDVVTYNT 312

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVV--------------------------------- 383
           +L GL + + + EA E+F  M   GV                                  
Sbjct: 313 ILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRN 372

Query: 384 --ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV-YAAMIKGLCRSGKIHEA 440
              D  TY  +IDG C+ +++++    W+D++    I+ N++ Y  +I G C  G + EA
Sbjct: 373 LKPDVVTYNTLIDGFCKGSEMEKVNELWNDMI-SRRIYPNHISYGILINGYCNMGCVSEA 431

Query: 441 VHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
                E+V+ G    I+  N ++ G C+     +A + L  M   G+ PD +T+  L
Sbjct: 432 FRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTL 488


>gi|147857775|emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera]
          Length = 1099

 Score =  208 bits (530), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 137/526 (26%), Positives = 246/526 (46%), Gaps = 71/526 (13%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC  +++ EA K+  +M  +G +P+VV+Y  LI GYC+ G +D A+++ D M     
Sbjct: 341 IDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSC 400

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN+ TY+ L+ G+ + R V +A  L+ K+ ER      LS +   + +L+   C+   +
Sbjct: 401 GPNTRTYNELICGLCKKRKVHKAMALLNKMLER-----KLSPSLITYNSLIHGQCKVNDL 455

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
              +R+   M +   V +++     ID+LC+ GR   A  +   ++ +G+  + V Y ++
Sbjct: 456 ESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTAL 515

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G CK G    AY LLE  +    LP+ +TY VL+EGLC E  +++A  ++  ML+   
Sbjct: 516 IDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLT--- 572

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                              +P V+T   +I    K G  + ALK
Sbjct: 573 --------------------------------MGVKPTVVTYTILIGEMLKDGAFDHALK 600

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           V N MV+  +  PD  T+T  +    + G ++E  +++ + M + G  P +VTY  ++ G
Sbjct: 601 VFNHMVSLGY-QPDVCTYTAFLHAYFSQGMLEEVDDVIAK-MNEEGILPDLVTYTVLIDG 658

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK-------------- 406
             RL     A +   CM+  G        +I+I  L   N++ E +              
Sbjct: 659 YARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETRSEIGIDSVSNVNSV 718

Query: 407 ---------------RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 451
                          + ++ +V      D  +Y A+I G C+  ++ EA   ++ + + G
Sbjct: 719 DIADVWKTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERG 778

Query: 452 VTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           ++P+   YN ++D  CKL +  EA +++  M +NGL P   ++++L
Sbjct: 779 MSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVENGLLPLLESYKLL 824



 Score =  202 bits (513), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 128/488 (26%), Positives = 231/488 (47%), Gaps = 77/488 (15%)

Query: 10  VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSV 69
           + E   ++ ++ +    PN+ ++  +++GYC+ G +  A     ++   G+ P++ TY+ 
Sbjct: 175 IDEMKTVYLELLNNQISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTS 234

Query: 70  LVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAED 129
           L+ G  R + V+ A                                      EVF I   
Sbjct: 235 LILGHCRNKGVDNAY-------------------------------------EVFLI--- 254

Query: 130 MPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG 189
           MPQ      E +  ++I  LC +GR + A ++   M +    P++ +Y  +++ L   G 
Sbjct: 255 MPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGR 314

Query: 190 CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNI 249
            + A  L  E  + G  P+ HTY VL++GLC E+ +++ARK+L  M  K  +        
Sbjct: 315 KVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLI-------- 366

Query: 250 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK 309
                                      P V+T N +I+G+CK G I++A ++L D++   
Sbjct: 367 ---------------------------PSVVTYNALIDGYCKEGMIDDAFEIL-DLMESN 398

Query: 310 FCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEE 369
            C P+  T+  +I GL    ++ +A+ LL +++ +R  SP ++TYN+++ G  ++  +E 
Sbjct: 399 SCGPNTRTYNELICGLCKKRKVHKAMALLNKML-ERKLSPSLITYNSLIHGQCKVNDLES 457

Query: 370 AKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIK 429
           A  + + M   G+V D  TY++ ID LC+  +++EA   +D +       +  +Y A+I 
Sbjct: 458 AYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALID 517

Query: 430 GLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNP 489
           G C+ GKI  A   L  +++    PN   YNV+I+G CK    +EA  ++ +M   G+ P
Sbjct: 518 GYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKP 577

Query: 490 DAVTWRIL 497
             VT+ IL
Sbjct: 578 TVVTYTIL 585



 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 151/599 (25%), Positives = 258/599 (43%), Gaps = 118/599 (19%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R+ EA KLF DM      P V +YT LI+    +G    A  +F+EM+  G  PN
Sbjct: 274 LCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPN 333

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             TY+VL+ G+ +   ++ A  ++ ++ E+      L  +   +  L+D  C+EG +++ 
Sbjct: 334 VHTYTVLIDGLCKENKMDEARKMLSEMSEK-----GLIPSVVTYNALIDGYCKEGMIDDA 388

Query: 124 FRIAEDM------PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
           F I + M      P  ++ NE   CG     LC+  + H A  ++  M +R L+PSL++Y
Sbjct: 389 FEILDLMESNSCGPNTRTYNE-LICG-----LCKKRKVHKAMALLNKMLERKLSPSLITY 442

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKA--------- 228
           NS++HG CK      AY+LL    + G +P + TY V ++ LC E  +E+A         
Sbjct: 443 NSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKA 502

Query: 229 --------------------------RKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTE 262
                                       +L+ ML+   +  +   N+ +  LC  K   E
Sbjct: 503 KGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKE 562

Query: 263 LLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTII 322
             +++  ML    +P V+T   +I    K G  + ALKV N MV+  +  PD  T+T  +
Sbjct: 563 ASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGY-QPDVCTYTAFL 621

Query: 323 FGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGV 382
               + G ++E  +++ + M + G  P +VTY  ++ G  RL     A +   CM+  G 
Sbjct: 622 HAYFSQGMLEEVDDVIAK-MNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGC 680

Query: 383 VADSTTYAIVIDGLCESNQLDEAK-----------------------------RFWDDIV 413
                  +I+I  L   N++ E +                             + ++ +V
Sbjct: 681 KPSLYIVSILIKNLSHENRMKETRSEIGIDSVSNVNSVDIADVWKTLEYEIALKLFEKMV 740

Query: 414 WPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKR 473
                 D  +Y A+I G C+  ++ EA   ++ + + G++P+   YN ++D  CKL +  
Sbjct: 741 EHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLLDCCCKLGVYA 800

Query: 474 EAYQILREMRKNGLNP-----------------------------------DAVTWRIL 497
           EA +++  M +NGL P                                   D V W++L
Sbjct: 801 EAVRLVDAMVENGLLPLLESYKLLVCGLYIEGSNEKAKAVFHGLLSCGYNYDEVAWKVL 859



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 105/410 (25%), Positives = 195/410 (47%), Gaps = 13/410 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   RV EA  LF  +K++G   N V YT LI GYC+ G++DVAY + + M +   
Sbjct: 481 IDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDAC 540

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           LPNS TY+VL+ G+ + + ++ A+ L+ K+         +      +  L+  + ++G  
Sbjct: 541 LPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTM-----GVKPTVVTYTILIGEMLKDGAF 595

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +   ++   M       +       + +    G       V+  M + G+ P LV+Y  +
Sbjct: 596 DHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVL 655

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G  + G   RA+  L+  +  G  PS +   +L++ L  E+ +++ R  +  + S  +
Sbjct: 656 IDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETRSEIG-IDSVSN 714

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           V+   I +++      I      L +   M++  C  DV     +I GFC+  R+EEA  
Sbjct: 715 VNSVDIADVWKTLEYEIA-----LKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQG 769

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +++ M   +  +P    + +++     +G   EA+ L+   M + G  P + +Y  ++ G
Sbjct: 770 LVHHM-KERGMSPSEDIYNSLLDCCCKLGVYAEAVRLV-DAMVENGLLPLLESYKLLVCG 827

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD 410
           L+     E+AK VF+ +L  G   D   + ++IDGL + + +DE     D
Sbjct: 828 LYIEGSNEKAKAVFHGLLSCGYNYDEVAWKVLIDGLLKRDLVDECSELID 877



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 106/489 (21%), Positives = 205/489 (41%), Gaps = 41/489 (8%)

Query: 4   LCGLSRVGEAHK---LFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +CGL +  + HK   L   M  R   P++++Y +LIHG C+  +++ AY++   M   G+
Sbjct: 411 ICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGL 470

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P+  TYSV +  + +   VE A  L   +     + + +  N   +  L+D  C+ G +
Sbjct: 471 VPDQWTYSVFIDTLCKEGRVEEAGTLFDSV-----KAKGVKANEVIYTALIDGYCKVGKI 525

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +  + + E M     +   +    +I+ LC+  +   AS +V  M   G+ P++V+Y  +
Sbjct: 526 DVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTIL 585

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +  + K G    A ++    +  GY P   TY   +     +  LE+   V+  M  +  
Sbjct: 586 IGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGI 645

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE--- 297
           +       + +     +       + L  M+ T C+P +  ++ +I       R++E   
Sbjct: 646 LPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETRS 705

Query: 298 --------------------------ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRI 331
                                     ALK+   MV    C  D   +  +I G     R+
Sbjct: 706 EIGIDSVSNVNSVDIADVWKTLEYEIALKLFEKMVEHG-CTIDVSIYGALIAGFCQQERL 764

Query: 332 QEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAI 391
           +EA  L++  M +RG SP    YN++L    +L    EA  + + M+  G++    +Y +
Sbjct: 765 EEAQGLVHH-MKERGMSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVENGLLPLLESYKL 823

Query: 392 VIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF--LYELVD 449
           ++ GL      ++AK  +  ++     +D   +  +I GL +   + E      + E  D
Sbjct: 824 LVCGLYIEGSNEKAKAVFHGLLSCGYNYDEVAWKVLIDGLLKRDLVDECSELIDIMEEKD 883

Query: 450 SGVTPNIVC 458
           +    +I C
Sbjct: 884 ATAQADIAC 892



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 68/269 (25%), Positives = 115/269 (42%), Gaps = 31/269 (11%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           E   +   M   G +P++V+YT LI GY R G    A+     M   G  P+    S+L+
Sbjct: 632 EVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILI 691

Query: 72  R------------------GVLRTRDVERANV-------LMFKLWERMKEEEDLSVNNAA 106
           +                   V     V+ A+V       +  KL+E+M E    +++ + 
Sbjct: 692 KNLSHENRMKETRSEIGIDSVSNVNSVDIADVWKTLEYEIALKLFEKMVEH-GCTIDVSI 750

Query: 107 FANLVDSLCREGYVNEVFRIAEDMPQ-GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVM 165
           +  L+   C++  + E   +   M + G S +E+     ++D  C+ G    A R+V  M
Sbjct: 751 YGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIY-NSLLDCCCKLGVYAEAVRLVDAM 809

Query: 166 RKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDL 225
            + GL P L SY  +V GL   G   +A  +    +  GY   E  +KVL++GL     +
Sbjct: 810 VENGLLPLLESYKLLVCGLYIEGSNEKAKAVFHGLLSCGYNYDEVAWKVLIDGLLKRDLV 869

Query: 226 EKARKVLQFMLSKKDVDRTRICNIYLRAL 254
           ++  +++  M  K   D T   +I   AL
Sbjct: 870 DECSELIDIMEEK---DATAQADIACAAL 895


>gi|115454009|ref|NP_001050605.1| Os03g0597200 [Oryza sativa Japonica Group]
 gi|28875991|gb|AAO60000.1| putative pentatricopeptide repeat protein [Oryza sativa Japonica
           Group]
 gi|108709658|gb|ABF97453.1| DEAD/DEAH box helicase family protein, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113549076|dbj|BAF12519.1| Os03g0597200 [Oryza sativa Japonica Group]
          Length = 742

 Score =  208 bits (530), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 134/491 (27%), Positives = 249/491 (50%), Gaps = 9/491 (1%)

Query: 8   SRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTY 67
           S++     ++ +M +RG  P+VV++ TL+   CR  ++  A  + +EM   GV P+  T+
Sbjct: 160 SKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTF 219

Query: 68  SVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF-RI 126
           + L++G +    +E A  +  ++ E       ++VN      L++  C+ G V +    I
Sbjct: 220 TTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNV-----LINGYCKLGRVEDALGYI 274

Query: 127 AEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK 186
            +++  G    ++      ++ LC++     A +V+ VM + G  P + +YN +V+ LCK
Sbjct: 275 QQEIADGFE-PDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCK 333

Query: 187 HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRI 246
           +G    A  +L + +  G LP   T+  L+  LC  + LE+A  + + +  K        
Sbjct: 334 NGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYT 393

Query: 247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV 306
            NI + ALC + +P   L +   M  + C PD +T NT+I+  C +G++ +AL +L DM 
Sbjct: 394 FNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDME 453

Query: 307 AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 366
           +   C    +T+ TII GL    RI+EA  +  Q M  +G S   +T+N ++ GL + ++
Sbjct: 454 STG-CPRSTITYNTIIDGLCKKMRIEEAEEVFDQ-MDLQGISRNAITFNTLIDGLCKDKK 511

Query: 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAA 426
           +++A E+ N M+  G+  ++ TY  ++   C+   + +A    + +       D   Y  
Sbjct: 512 IDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGT 571

Query: 427 MIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG 486
           +I GLC++G+   A+  L  +   G+ P    YN V+    + +  R+A  + REM + G
Sbjct: 572 LINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVG 631

Query: 487 LNPDAVTWRIL 497
             PDA+T++I+
Sbjct: 632 EPPDALTYKIV 642



 Score =  207 bits (526), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 125/467 (26%), Positives = 229/467 (49%), Gaps = 7/467 (1%)

Query: 28  NVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLM 87
           + V Y  L++      +M +   V+ EM   G+ P+ +T++ L++ + R   V  A +++
Sbjct: 145 DTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLML 204

Query: 88  FKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMID 147
            ++  R      ++ +   F  L+     EG +    R+   M +      +     +I+
Sbjct: 205 EEMSSR-----GVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLIN 259

Query: 148 SLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLP 207
             C+ GR   A   +      G  P  ++YN+ V+GLC++     A ++++  +Q G+ P
Sbjct: 260 GYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDP 319

Query: 208 SEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVL 267
              TY ++V  LC    LE+A+ +L  M+ +  +      N  + ALC      E L++ 
Sbjct: 320 DVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLA 379

Query: 268 VFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLN 327
             +      PDV T N +IN  CK+G    AL++  +M     C PD VT+ T+I  L +
Sbjct: 380 RQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEM-KNSGCTPDEVTYNTLIDNLCS 438

Query: 328 VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADST 387
           +G++ +AL+LL   M   G     +TYN ++ GL +  R+EEA+EVF+ M   G+  ++ 
Sbjct: 439 LGKLGKALDLLKD-MESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAI 497

Query: 388 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYEL 447
           T+  +IDGLC+  ++D+A    + ++      +N  Y +++   C+ G I +A   L  +
Sbjct: 498 TFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETM 557

Query: 448 VDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
             +G   ++V Y  +I+G CK    + A ++LR MR  G+ P    +
Sbjct: 558 TANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAY 604



 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 132/509 (25%), Positives = 235/509 (46%), Gaps = 10/509 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M  LC   +V  A  +  +M SRG  P+  ++TTL+ G+   G ++ A +V   M   G 
Sbjct: 188 MKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGC 247

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEED-LSVNNAAFANLVDSLCREGY 119
               +T +VL+ G  +   VE A      L    +E  D    +   +   V+ LC+  +
Sbjct: 248 SATKVTVNVLINGYCKLGRVEDA------LGYIQQEIADGFEPDQITYNTFVNGLCQNDH 301

Query: 120 VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           V    ++ + M Q     + F    +++ LC++G+   A  ++  M  RG  P + ++N+
Sbjct: 302 VGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNT 361

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++  LC       A  L  +    G  P  +T+ +L+  LC   D   A ++ + M +  
Sbjct: 362 LIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSG 421

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                   N  +  LC +    + L++L  M  T C    IT NT+I+G CK  RIEEA 
Sbjct: 422 CTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAE 481

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           +V + M   +  + +A+TF T+I GL    +I +A  L+ Q++ + G  P  +TYN++L 
Sbjct: 482 EVFDQMDL-QGISRNAITFNTLIDGLCKDKKIDDAFELINQMISE-GLQPNNITYNSILT 539

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
              +   +++A ++   M   G   D  TY  +I+GLC++ +   A +    +       
Sbjct: 540 HYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRP 599

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMK-REAYQI 478
               Y  +++ L R   I +A+    E+ + G  P+ + Y +V  G C+     +EA+  
Sbjct: 600 TPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDF 659

Query: 479 LREMRKNGLNPDAVTWRILDKLHGNRGND 507
           + EM   G  P+  ++R+L +   N G D
Sbjct: 660 MLEMVDKGFIPEFSSFRMLAEGLLNLGMD 688



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 88/298 (29%), Positives = 145/298 (48%), Gaps = 6/298 (2%)

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
           GIQ   +   H   VLVEG    S ++    V   M ++         N  ++ALC    
Sbjct: 141 GIQADTVVYNHLLNVLVEG----SKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQ 196

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
               + +L  M      PD  T  T++ GF + G IE AL+V   M+    C+   VT  
Sbjct: 197 VRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLE-MGCSATKVTVN 255

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
            +I G   +GR+++AL  + Q +   G+ P  +TYN  + GL +   V  A +V + M+ 
Sbjct: 256 VLINGYCKLGRVEDALGYIQQEIAD-GFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQ 314

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
            G   D  TY IV++ LC++ QL+EAK   + +V    + D   +  +I  LC   ++ E
Sbjct: 315 EGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEE 374

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           A+    ++   GV+P++  +N++I+  CK+     A ++  EM+ +G  PD VT+  L
Sbjct: 375 ALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTL 432



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 101/379 (26%), Positives = 176/379 (46%), Gaps = 12/379 (3%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC  +R+ EA  L   +  +G  P+V ++  LI+  C+ G+  +A ++F+EM++ G  P+
Sbjct: 366 LCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPD 425

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY+ L+  +     + +A  L+  +     E      +   +  ++D LC++  + E 
Sbjct: 426 EVTYNTLIDNLCSLGKLGKALDLLKDM-----ESTGCPRSTITYNTIIDGLCKKMRIEEA 480

Query: 124 FRIAEDMP-QGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
             + + M  QG S N       +ID LC+  +   A  ++  M   GL P+ ++YNSI+ 
Sbjct: 481 EEVFDQMDLQGISRNA-ITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILT 539

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
             CK G   +A  +LE     G+     TY  L+ GLC     + A KVL+ M  K    
Sbjct: 540 HYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRP 599

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK-MGRIEEALKV 301
             +  N  L++L    N  + L++   M +    PD +T   V  G C+  G I+EA   
Sbjct: 600 TPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDF 659

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
           + +MV   F  P+  +F  +  GLLN+G     +  +  +M +       V+    +RG 
Sbjct: 660 MLEMVDKGFI-PEFSSFRMLAEGLLNLGMDDYFIRAIEIIMEKVDLRESDVS---AIRGY 715

Query: 362 FRLRRVEEAKEVFNCMLGI 380
            ++R+  +A   F   L I
Sbjct: 716 LKIRKFYDALATFGRFLEI 734



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 74/158 (46%)

Query: 337 LLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 396
           +L Q+ P  G     V YN +L  L    +++  + V++ M   G+  D  T+  ++  L
Sbjct: 132 ILNQLQPLFGIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKAL 191

Query: 397 CESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNI 456
           C ++Q+  A    +++       D   +  +++G    G I  A+     +++ G +   
Sbjct: 192 CRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATK 251

Query: 457 VCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
           V  NV+I+G CKL    +A   +++   +G  PD +T+
Sbjct: 252 VTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITY 289


>gi|125587025|gb|EAZ27689.1| hypothetical protein OsJ_11637 [Oryza sativa Japonica Group]
          Length = 650

 Score =  208 bits (530), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 134/491 (27%), Positives = 249/491 (50%), Gaps = 9/491 (1%)

Query: 8   SRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTY 67
           S++     ++ +M +RG  P+VV++ TL+   CR  ++  A  + +EM   GV P+  T+
Sbjct: 68  SKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTF 127

Query: 68  SVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF-RI 126
           + L++G +    +E A  +  ++ E       ++VN      L++  C+ G V +    I
Sbjct: 128 TTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNV-----LINGYCKLGRVEDALGYI 182

Query: 127 AEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK 186
            +++  G    ++      ++ LC++     A +V+ VM + G  P + +YN +V+ LCK
Sbjct: 183 QQEIADGFE-PDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCK 241

Query: 187 HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRI 246
           +G    A  +L + +  G LP   T+  L+  LC  + LE+A  + + +  K        
Sbjct: 242 NGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYT 301

Query: 247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV 306
            NI + ALC + +P   L +   M  + C PD +T NT+I+  C +G++ +AL +L DM 
Sbjct: 302 FNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDME 361

Query: 307 AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 366
           +   C    +T+ TII GL    RI+EA  +  Q M  +G S   +T+N ++ GL + ++
Sbjct: 362 STG-CPRSTITYNTIIDGLCKKMRIEEAEEVFDQ-MDLQGISRNAITFNTLIDGLCKDKK 419

Query: 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAA 426
           +++A E+ N M+  G+  ++ TY  ++   C+   + +A    + +       D   Y  
Sbjct: 420 IDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGT 479

Query: 427 MIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG 486
           +I GLC++G+   A+  L  +   G+ P    YN V+    + +  R+A  + REM + G
Sbjct: 480 LINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVG 539

Query: 487 LNPDAVTWRIL 497
             PDA+T++I+
Sbjct: 540 EPPDALTYKIV 550



 Score =  207 bits (526), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 126/471 (26%), Positives = 230/471 (48%), Gaps = 7/471 (1%)

Query: 24  GHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERA 83
           G   + V Y  L++      +M +   V+ EM   G+ P+ +T++ L++ + R   V  A
Sbjct: 49  GIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTA 108

Query: 84  NVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACG 143
            +++ ++  R      ++ +   F  L+     EG +    R+   M +      +    
Sbjct: 109 VLMLEEMSSR-----GVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVN 163

Query: 144 HMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQF 203
            +I+  C+ GR   A   +      G  P  ++YN+ V+GLC++     A ++++  +Q 
Sbjct: 164 VLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQE 223

Query: 204 GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTEL 263
           G+ P   TY ++V  LC    LE+A+ +L  M+ +  +      N  + ALC      E 
Sbjct: 224 GHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEA 283

Query: 264 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF 323
           L++   +      PDV T N +IN  CK+G    AL++  +M     C PD VT+ T+I 
Sbjct: 284 LDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEM-KNSGCTPDEVTYNTLID 342

Query: 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 383
            L ++G++ +AL+LL   M   G     +TYN ++ GL +  R+EEA+EVF+ M   G+ 
Sbjct: 343 NLCSLGKLGKALDLLKD-MESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGIS 401

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
            ++ T+  +IDGLC+  ++D+A    + ++      +N  Y +++   C+ G I +A   
Sbjct: 402 RNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADI 461

Query: 444 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
           L  +  +G   ++V Y  +I+G CK    + A ++LR MR  G+ P    +
Sbjct: 462 LETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAY 512



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 132/509 (25%), Positives = 235/509 (46%), Gaps = 10/509 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M  LC   +V  A  +  +M SRG  P+  ++TTL+ G+   G ++ A +V   M   G 
Sbjct: 96  MKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGC 155

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEED-LSVNNAAFANLVDSLCREGY 119
               +T +VL+ G  +   VE A      L    +E  D    +   +   V+ LC+  +
Sbjct: 156 SATKVTVNVLINGYCKLGRVEDA------LGYIQQEIADGFEPDQITYNTFVNGLCQNDH 209

Query: 120 VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           V    ++ + M Q     + F    +++ LC++G+   A  ++  M  RG  P + ++N+
Sbjct: 210 VGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNT 269

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++  LC       A  L  +    G  P  +T+ +L+  LC   D   A ++ + M +  
Sbjct: 270 LIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSG 329

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                   N  +  LC +    + L++L  M  T C    IT NT+I+G CK  RIEEA 
Sbjct: 330 CTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAE 389

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           +V + M   +  + +A+TF T+I GL    +I +A  L+ Q++ + G  P  +TYN++L 
Sbjct: 390 EVFDQMDL-QGISRNAITFNTLIDGLCKDKKIDDAFELINQMISE-GLQPNNITYNSILT 447

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
              +   +++A ++   M   G   D  TY  +I+GLC++ +   A +    +       
Sbjct: 448 HYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRP 507

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMK-REAYQI 478
               Y  +++ L R   I +A+    E+ + G  P+ + Y +V  G C+     +EA+  
Sbjct: 508 TPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDF 567

Query: 479 LREMRKNGLNPDAVTWRILDKLHGNRGND 507
           + EM   G  P+  ++R+L +   N G D
Sbjct: 568 MLEMVDKGFIPEFSSFRMLAEGLLNLGMD 596



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 88/298 (29%), Positives = 145/298 (48%), Gaps = 6/298 (2%)

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
           GIQ   +   H   VLVEG    S ++    V   M ++         N  ++ALC    
Sbjct: 49  GIQADTVVYNHLLNVLVEG----SKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQ 104

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
               + +L  M      PD  T  T++ GF + G IE AL+V   M+    C+   VT  
Sbjct: 105 VRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMG-CSATKVTVN 163

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
            +I G   +GR+++AL  + Q +   G+ P  +TYN  + GL +   V  A +V + M+ 
Sbjct: 164 VLINGYCKLGRVEDALGYIQQEIAD-GFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQ 222

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
            G   D  TY IV++ LC++ QL+EAK   + +V    + D   +  +I  LC   ++ E
Sbjct: 223 EGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEE 282

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           A+    ++   GV+P++  +N++I+  CK+     A ++  EM+ +G  PD VT+  L
Sbjct: 283 ALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTL 340



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 102/379 (26%), Positives = 176/379 (46%), Gaps = 12/379 (3%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC  +R+ EA  L   +  +G  P+V ++  LI+  C+ G+  +A ++F+EM++ G  P+
Sbjct: 274 LCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPD 333

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY+ L+  +     + +A      L + M E      +   +  ++D LC++  + E 
Sbjct: 334 EVTYNTLIDNLCSLGKLGKA----LDLLKDM-ESTGCPRSTITYNTIIDGLCKKMRIEEA 388

Query: 124 FRIAEDMP-QGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
             + + M  QG S N       +ID LC+  +   A  ++  M   GL P+ ++YNSI+ 
Sbjct: 389 EEVFDQMDLQGISRNA-ITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILT 447

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
             CK G   +A  +LE     G+     TY  L+ GLC     + A KVL+ M  K    
Sbjct: 448 HYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRP 507

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK-MGRIEEALKV 301
             +  N  L++L    N  + L++   M +    PD +T   V  G C+  G I+EA   
Sbjct: 508 TPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDF 567

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
           + +MV   F  P+  +F  +  GLLN+G     +  +  +M +       V+    +RG 
Sbjct: 568 MLEMVDKGFI-PEFSSFRMLAEGLLNLGMDDYFIRAIEIIMEKVDLRESDVS---AIRGY 623

Query: 362 FRLRRVEEAKEVFNCMLGI 380
            ++R+  +A   F   L I
Sbjct: 624 LKIRKFYDALATFGRFLEI 642



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 74/158 (46%)

Query: 337 LLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 396
           +L Q+ P  G     V YN +L  L    +++  + V++ M   G+  D  T+  ++  L
Sbjct: 40  ILNQLQPLFGIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKAL 99

Query: 397 CESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNI 456
           C ++Q+  A    +++       D   +  +++G    G I  A+     +++ G +   
Sbjct: 100 CRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATK 159

Query: 457 VCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
           V  NV+I+G CKL    +A   +++   +G  PD +T+
Sbjct: 160 VTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITY 197


>gi|302775294|ref|XP_002971064.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
 gi|300161046|gb|EFJ27662.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
          Length = 814

 Score =  208 bits (530), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 130/491 (26%), Positives = 243/491 (49%), Gaps = 13/491 (2%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCG-VLPNSLTY 67
           R  +A   F  MK +   P++ ++  L+   C+ G  + A++VF EM   G V P+   +
Sbjct: 169 RADDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALH 228

Query: 68  SVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIA 127
           + +VR +L+ + V+ A  +  ++     E+     +  A+  ++D L + G+  E  ++ 
Sbjct: 229 TAMVRTLLKAKRVKEAREVFGQM-----EKCGFPPDAIAYNTMIDGLAKAGHAQEALKVL 283

Query: 128 EDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKH 187
           ++M     V  E   G +++SLC++G    A  +  VM   G  P+ V Y S++HG  K 
Sbjct: 284 DNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKS 343

Query: 188 GGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC 247
           G    A  L +E ++ GY P   T+ V+++GLC   + E+A K  + M+           
Sbjct: 344 GRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTY 403

Query: 248 NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA 307
              ++ L  I        ++  M+   C PD +T   +++GFCK+GR++EA ++L+++  
Sbjct: 404 TTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDK 463

Query: 308 GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYS--PGIVTYNAVLRGLFRLR 365
               +P+   +++++ GL + G +++ L+ L++       +  PG+    +++ GL +  
Sbjct: 464 CS-SSPNLQLYSSLVNGLCDGGSVEKTLDDLFEQSKAAAETLDPGLCC--SIIVGLCKTG 520

Query: 366 RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCES--NQLDEAKRFWDDIVWPSNIHDNYV 423
           R++EA  +F  M+  G   D+TTY I+I+GLC S  N+++ A     D+     + D   
Sbjct: 521 RLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEKVGYLPDAVT 580

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y  +  GLC+ G++  AV  L E    G   ++V Y  +  G C       A  + +EM 
Sbjct: 581 YTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMV 640

Query: 484 KNGLNPDAVTW 494
           + G  PDA  +
Sbjct: 641 RQGGAPDAAAY 651



 Score =  208 bits (529), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 138/481 (28%), Positives = 238/481 (49%), Gaps = 17/481 (3%)

Query: 24  GHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERA 83
           G   +V +Y  L++           Y + +EM   G+ PN+ ++++L+R   RTR  + A
Sbjct: 114 GFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRADDA 173

Query: 84  NVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFAC- 142
            V  F++ +R + + DL      F  LVD LC+ G   + F +  +M     V  + A  
Sbjct: 174 -VTCFEIMKRKRCKPDLHT----FLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALH 228

Query: 143 GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQ 202
             M+ +L ++ R   A  V   M K G  P  ++YN+++ GL K G    A ++L+  + 
Sbjct: 229 TAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLA 288

Query: 203 FGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTE 262
              +P+E TY +LV  LC    LE+A ++ + M +      + I    +          E
Sbjct: 289 KACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKE 348

Query: 263 LLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTII 322
             ++   M++   +PDVIT   +I+G CK G  E+A K   +M+ G  C P+ VT+TTII
Sbjct: 349 ACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGG-CKPNVVTYTTII 407

Query: 323 FGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGV 382
            GL  +GR+  A  ++ + M   G  P  VTY  +L G  +L R++EA ++ + +     
Sbjct: 408 QGLSKIGRVANAFRIM-KGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSS 466

Query: 383 VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH----DNYVYAAMIKGLCRSGKIH 438
             +   Y+ +++GLC+   +++     DD+   S       D  +  ++I GLC++G++ 
Sbjct: 467 SPNLQLYSSLVNGLCDGGSVEKT---LDDLFEQSKAAAETLDPGLCCSIIVGLCKTGRLD 523

Query: 439 EAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKR--EAYQILREMRKNGLNPDAVTWRI 496
           EA      +V  G  P+   YN++I+G C+    R   A+ +L ++ K G  PDAVT+  
Sbjct: 524 EACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEKVGYLPDAVTYTP 583

Query: 497 L 497
           L
Sbjct: 584 L 584



 Score =  201 bits (512), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 139/498 (27%), Positives = 229/498 (45%), Gaps = 48/498 (9%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC    +  A +LF  M + G  PN V YT+LIHG+ ++G M  A  +FDEM   G 
Sbjct: 302 VNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGY 361

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +T++V++ G                                        LC+ G  
Sbjct: 362 RPDVITHTVMIDG----------------------------------------LCKSGNF 381

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +  +  E+M +G           +I  L + GR   A R++  M   G  P  V+Y  +
Sbjct: 382 EQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICL 441

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVL--QFMLSK 238
           + G CK G    A QLL+E  +    P+   Y  LV GLC    +EK    L  Q   + 
Sbjct: 442 LDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVNGLCDGGSVEKTLDDLFEQSKAAA 501

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKM--GRIE 296
           + +D    C+I +  LC      E   +   M+   C+PD  T N +ING C+    R+E
Sbjct: 502 ETLDPGLCCSIIV-GLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVE 560

Query: 297 EALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
            A  +L+D+    +  PDAVT+T +  GL  +G +  A+ +L +    RG++  +V Y A
Sbjct: 561 RAFALLHDLEKVGY-LPDAVTYTPLCIGLCKIGEVDRAVKMLEEA-SSRGWNADVVAYTA 618

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416
           +  GL    +V+ A  +F  M+  G   D+  Y  +I+GL +  +L++A +F+D+++   
Sbjct: 619 LCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKVKKLEDACKFFDEMIGKG 678

Query: 417 NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG-VTPNIVCYNVVIDGACKLSMKREA 475
                  Y A+++ LC +G + EA H    ++  G +  +++ Y+ +I G CK      A
Sbjct: 679 QKPTVATYTALVQALCHAGNVDEAFHRFESMLARGELVGSVMIYDALIHGFCKALKVDAA 738

Query: 476 YQILREMRKNGLNPDAVT 493
            ++  +M   G  P AVT
Sbjct: 739 LKLFEDMISRGNVPTAVT 756



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 130/485 (26%), Positives = 222/485 (45%), Gaps = 18/485 (3%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           RV EA ++F  M+  G  P+ ++Y T+I G  + G    A KV D M     +P  +TY 
Sbjct: 240 RVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYG 299

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
           +LV  + +   +ERA  L      R+        N+  + +L+    + G + E   + +
Sbjct: 300 ILVNSLCKAGTLERAEELF-----RVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFD 354

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
           +M +     +      MID LC+SG    A++    M + G  P++V+Y +I+ GL K G
Sbjct: 355 EMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIG 414

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
               A+++++  I  G  P   TY  L++G C    L++A ++L  +         ++ +
Sbjct: 415 RVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYS 474

Query: 249 IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLN-----TVINGFCKMGRIEEALKVLN 303
             +  LC   +  + L+ L      Q +    TL+     ++I G CK GR++EA ++  
Sbjct: 475 SLVNGLCDGGSVEKTLDDLF----EQSKAAAETLDPGLCCSIIVGLCKTGRLDEACRIFQ 530

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNV--GRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
            MV+ + C PDA T+  +I GL      R++ A  LL+  + + GY P  VTY  +  GL
Sbjct: 531 RMVS-EGCKPDATTYNILINGLCRSRENRVERAFALLHD-LEKVGYLPDAVTYTPLCIGL 588

Query: 362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
            ++  V+ A ++       G  AD   Y  +  GLC   Q+D A   + ++V      D 
Sbjct: 589 CKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDA 648

Query: 422 YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
             Y  +I GL +  K+ +A  F  E++  G  P +  Y  ++   C      EA+     
Sbjct: 649 AAYCCIINGLIKVKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFES 708

Query: 482 MRKNG 486
           M   G
Sbjct: 709 MLARG 713



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 124/444 (27%), Positives = 217/444 (48%), Gaps = 23/444 (5%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC      +A K F +M   G  PNVV+YTT+I G  + G +  A+++   M   G 
Sbjct: 372 IDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGC 431

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+S+TY  L+ G  +   ++ A  L+ +L     ++   S N   +++LV+ LC  G V
Sbjct: 432 FPDSVTYICLLDGFCKLGRLDEAAQLLDEL-----DKCSSSPNLQLYSSLVNGLCDGGSV 486

Query: 121 NEVFRIAEDMPQGKSVNEEF---ACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
            +   + +   Q K+  E      C  +I  LC++GR   A R+   M   G  P   +Y
Sbjct: 487 EKT--LDDLFEQSKAAAETLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTY 544

Query: 178 NSIVHGLCK--HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM 235
           N +++GLC+       RA+ LL +  + GYLP   TY  L  GLC   ++++A K+L+  
Sbjct: 545 NILINGLCRSRENRVERAFALLHDLEKVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEA 604

Query: 236 LSK----KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK 291
            S+      V  T +C      LC        +++   M++    PD      +ING  K
Sbjct: 605 SSRGWNADVVAYTALCT----GLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIK 660

Query: 292 MGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG- 350
           + ++E+A K  ++M+ GK   P   T+T ++  L + G + EA +  ++ M  RG   G 
Sbjct: 661 VKKLEDACKFFDEMI-GKGQKPTVATYTALVQALCHAGNVDEAFHR-FESMLARGELVGS 718

Query: 351 IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD 410
           ++ Y+A++ G  +  +V+ A ++F  M+  G V  + T A + DGL  S + ++A+    
Sbjct: 719 VMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQELLQ 778

Query: 411 DIVWPSNIHDNYVYAAMIKGLCRS 434
           ++    +      + A++ GL +S
Sbjct: 779 EMAAGGSPPHAATFTAILDGLRKS 802



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 124/471 (26%), Positives = 218/471 (46%), Gaps = 56/471 (11%)

Query: 71  VRGVLRTRDVERANVLMFKLW--ERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
           V  VLR+  V    +  F+ W  E+   + D+   N     L++ L  E   ++ + I E
Sbjct: 89  VAAVLRSLKVTGTAISFFR-WAGEQAGFQHDVFTYNC----LMNLLVAEKNYSQCYAIHE 143

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
           +M +       F+   +I S  R+ R   A     +M+++   P L ++  +V  LCK G
Sbjct: 144 EMLKAGIAPNTFSFNILIRSFARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAG 203

Query: 189 GCMRAYQLLEEGIQFGYLPSE---HT---------------------------------Y 212
              +A+++  E +  G++P +   HT                                 Y
Sbjct: 204 MDEKAFEVFHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAY 263

Query: 213 KVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALC---LIKNPTELLNVLVF 269
             +++GL      ++A KVL  ML+K  V       I + +LC    ++   EL  V   
Sbjct: 264 NTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRV--- 320

Query: 270 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG 329
           M  +  +P+ +   ++I+GF K GR++EA  + ++MV   +  PD +T T +I GL   G
Sbjct: 321 MAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGY-RPDVITHTVMIDGLCKSG 379

Query: 330 RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTY 389
             ++A     ++M + G  P +VTY  +++GL ++ RV  A  +   M+  G   DS TY
Sbjct: 380 NFEQAAKSFEEMM-RGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTY 438

Query: 390 AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449
             ++DG C+  +LDEA +  D++   S+  +  +Y++++ GLC  G + + +  L+E   
Sbjct: 439 ICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVNGLCDGGSVEKTLDDLFEQSK 498

Query: 450 SG---VTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           +    + P + C   +I G CK     EA +I + M   G  PDA T+ IL
Sbjct: 499 AAAETLDPGLCCS--IIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNIL 547


>gi|125544747|gb|EAY90886.1| hypothetical protein OsI_12495 [Oryza sativa Indica Group]
          Length = 742

 Score =  208 bits (530), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 134/491 (27%), Positives = 249/491 (50%), Gaps = 9/491 (1%)

Query: 8   SRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTY 67
           S++     ++ +M +RG  P+VV++ TL+   CR  ++  A  + +EM   GV P+  T+
Sbjct: 160 SKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVIMLEEMSSRGVAPDETTF 219

Query: 68  SVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF-RI 126
           + L++G +    +E A  +  ++ E       ++VN      L++  C+ G V +    I
Sbjct: 220 TTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNV-----LINGYCKLGRVEDALGYI 274

Query: 127 AEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK 186
            +++  G    ++      ++ LC++     A +V+ VM + G  P + +YN +V+ LCK
Sbjct: 275 QQEIADGFE-PDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCK 333

Query: 187 HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRI 246
           +G    A  +L + +  G LP   T+  L+  LC  + LE+A  + + +  K        
Sbjct: 334 NGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYT 393

Query: 247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV 306
            NI + ALC + +P   L +   M  + C PD +T NT+I+  C +G++ +AL +L DM 
Sbjct: 394 FNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDME 453

Query: 307 AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 366
           +   C    +T+ TII GL    RI+EA  +  Q M  +G S   +T+N ++ GL + ++
Sbjct: 454 STG-CPRSTITYNTIIDGLCKKMRIEEAEEVFDQ-MDLQGISRNAITFNTLIDGLCKDKK 511

Query: 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAA 426
           +++A E+ N M+  G+  ++ TY  ++   C+   + +A    + +       D   Y  
Sbjct: 512 IDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGT 571

Query: 427 MIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG 486
           +I GLC++G+   A+  L  +   G+ P    YN V+    + +  R+A  + REM + G
Sbjct: 572 LINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVG 631

Query: 487 LNPDAVTWRIL 497
             PDA+T++I+
Sbjct: 632 EPPDALTYKIV 642



 Score =  207 bits (528), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 125/467 (26%), Positives = 229/467 (49%), Gaps = 7/467 (1%)

Query: 28  NVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLM 87
           + V Y  L++      +M +   V+ EM   G+ P+ +T++ L++ + R   V  A +++
Sbjct: 145 DTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVIML 204

Query: 88  FKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMID 147
            ++  R      ++ +   F  L+     EG +    R+   M +      +     +I+
Sbjct: 205 EEMSSR-----GVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLIN 259

Query: 148 SLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLP 207
             C+ GR   A   +      G  P  ++YN+ V+GLC++     A ++++  +Q G+ P
Sbjct: 260 GYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDP 319

Query: 208 SEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVL 267
              TY ++V  LC    LE+A+ +L  M+ +  +      N  + ALC      E L++ 
Sbjct: 320 DVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLA 379

Query: 268 VFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLN 327
             +      PDV T N +IN  CK+G    AL++  +M     C PD VT+ T+I  L +
Sbjct: 380 RQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEM-KNSGCTPDEVTYNTLIDNLCS 438

Query: 328 VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADST 387
           +G++ +AL+LL   M   G     +TYN ++ GL +  R+EEA+EVF+ M   G+  ++ 
Sbjct: 439 LGKLGKALDLLKD-MESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAI 497

Query: 388 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYEL 447
           T+  +IDGLC+  ++D+A    + ++      +N  Y +++   C+ G I +A   L  +
Sbjct: 498 TFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETM 557

Query: 448 VDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
             +G   ++V Y  +I+G CK    + A ++LR MR  G+ P    +
Sbjct: 558 TANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAY 604



 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 132/509 (25%), Positives = 235/509 (46%), Gaps = 10/509 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M  LC   +V  A  +  +M SRG  P+  ++TTL+ G+   G ++ A +V   M   G 
Sbjct: 188 MKALCRAHQVRTAVIMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGC 247

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEED-LSVNNAAFANLVDSLCREGY 119
               +T +VL+ G  +   VE A      L    +E  D    +   +   V+ LC+  +
Sbjct: 248 SATKVTVNVLINGYCKLGRVEDA------LGYIQQEIADGFEPDQITYNTFVNGLCQNDH 301

Query: 120 VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           V    ++ + M Q     + F    +++ LC++G+   A  ++  M  RG  P + ++N+
Sbjct: 302 VGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNT 361

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++  LC       A  L  +    G  P  +T+ +L+  LC   D   A ++ + M +  
Sbjct: 362 LIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSG 421

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                   N  +  LC +    + L++L  M  T C    IT NT+I+G CK  RIEEA 
Sbjct: 422 CTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAE 481

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           +V + M   +  + +A+TF T+I GL    +I +A  L+ Q++ + G  P  +TYN++L 
Sbjct: 482 EVFDQMDL-QGISRNAITFNTLIDGLCKDKKIDDAFELINQMISE-GLQPNNITYNSILT 539

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
              +   +++A ++   M   G   D  TY  +I+GLC++ +   A +    +       
Sbjct: 540 HYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRP 599

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMK-REAYQI 478
               Y  +++ L R   I +A+    E+ + G  P+ + Y +V  G C+     +EA+  
Sbjct: 600 TPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDF 659

Query: 479 LREMRKNGLNPDAVTWRILDKLHGNRGND 507
           + EM   G  P+  ++R+L +   N G D
Sbjct: 660 MLEMVDKGFIPEFSSFRMLAEGLLNLGMD 688



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 88/298 (29%), Positives = 145/298 (48%), Gaps = 6/298 (2%)

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
           GIQ   +   H   VLVEG    S ++    V   M ++         N  ++ALC    
Sbjct: 141 GIQADTVVYNHLLNVLVEG----SKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQ 196

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
               + +L  M      PD  T  T++ GF + G IE AL+V   M+    C+   VT  
Sbjct: 197 VRTAVIMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLE-MGCSATKVTVN 255

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
            +I G   +GR+++AL  + Q +   G+ P  +TYN  + GL +   V  A +V + M+ 
Sbjct: 256 VLINGYCKLGRVEDALGYIQQEIAD-GFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQ 314

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
            G   D  TY IV++ LC++ QL+EAK   + +V    + D   +  +I  LC   ++ E
Sbjct: 315 EGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEE 374

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           A+    ++   GV+P++  +N++I+  CK+     A ++  EM+ +G  PD VT+  L
Sbjct: 375 ALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTL 432



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 101/379 (26%), Positives = 176/379 (46%), Gaps = 12/379 (3%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC  +R+ EA  L   +  +G  P+V ++  LI+  C+ G+  +A ++F+EM++ G  P+
Sbjct: 366 LCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPD 425

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY+ L+  +     + +A  L+  +     E      +   +  ++D LC++  + E 
Sbjct: 426 EVTYNTLIDNLCSLGKLGKALDLLKDM-----ESTGCPRSTITYNTIIDGLCKKMRIEEA 480

Query: 124 FRIAEDMP-QGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
             + + M  QG S N       +ID LC+  +   A  ++  M   GL P+ ++YNSI+ 
Sbjct: 481 EEVFDQMDLQGISRNA-ITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILT 539

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
             CK G   +A  +LE     G+     TY  L+ GLC     + A KVL+ M  K    
Sbjct: 540 HYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRP 599

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK-MGRIEEALKV 301
             +  N  L++L    N  + L++   M +    PD +T   V  G C+  G I+EA   
Sbjct: 600 TPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDF 659

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
           + +MV   F  P+  +F  +  GLLN+G     +  +  +M +       V+    +RG 
Sbjct: 660 MLEMVDKGFI-PEFSSFRMLAEGLLNLGMDDYFIRAIEIIMEKVDLRESDVS---AIRGY 715

Query: 362 FRLRRVEEAKEVFNCMLGI 380
            ++R+  +A   F   L I
Sbjct: 716 LKIRKFYDALATFGRFLEI 734


>gi|302767472|ref|XP_002967156.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
 gi|300165147|gb|EFJ31755.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
          Length = 651

 Score =  208 bits (530), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 131/431 (30%), Positives = 223/431 (51%), Gaps = 10/431 (2%)

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +PN  TY +L+RG     D++ A     +L E MK       N      L+  LC  G V
Sbjct: 6   MPNKFTYGILIRGFSSAGDLDIA----IQLLEEMKSN-GFEGNAVVHTTLMKGLCDAGRV 60

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E       M +     +      ++ +LC++G+   A  ++  M  RG  P  V+++++
Sbjct: 61  VEALEHFRAMAK-DCAPDVMTYTALVHALCKAGKFDEAQGMLREMIARGCAPDTVTFSTL 119

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGE-SDLEKARKVLQFMLSKK 239
           + GLCK G   +A+++LE+ IQ G   S+  ++ +++ LC + + +E A KVL  +++K 
Sbjct: 120 IDGLCKFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKG 179

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                 + N+ +   C  K+      +L  M++  C P+V T   +I G CK  R+ EA 
Sbjct: 180 FTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQ 239

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           ++L  MV G  C+P+ VT++T+I GL   G++ +A   L+Q+M +R   P +VT+N ++ 
Sbjct: 240 QLLEKMVTGG-CSPNVVTYSTVINGLCKQGQVDDAYE-LFQLMERRNCPPNVVTHNILID 297

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
           GL + +R+EEA+++++ M   G   D  TY  +IDGLC+S Q+DEA + +  I       
Sbjct: 298 GLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSA 357

Query: 420 DNYV-YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI 478
            N V Y+ +  G    G++ +A      LVD G +P++  Y  +I   CK S   E  ++
Sbjct: 358 ANAVTYSTLFHGYAALGRMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVEL 417

Query: 479 LREMRKNGLNP 489
           + EM   G  P
Sbjct: 418 VEEMASKGFPP 428



 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 144/570 (25%), Positives = 265/570 (46%), Gaps = 86/570 (15%)

Query: 6   GLSRVGE---AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEM-RHCGVL 61
           G S  G+   A +L  +MKS G   N V +TTL+ G C  G +  A + F  M + C   
Sbjct: 18  GFSSAGDLDIAIQLLEEMKSNGFEGNAVVHTTLMKGLCDAGRVVEALEHFRAMAKDCA-- 75

Query: 62  PNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVN 121
           P+ +TY+ LV  + +    + A  ++ ++  R       + +   F+ L+D LC+ G   
Sbjct: 76  PDVMTYTALVHALCKAGKFDEAQGMLREMIAR-----GCAPDTVTFSTLIDGLCKFGSEE 130

Query: 122 EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRN-HGASRVVYVMRKRGLTPSLVSYNSI 180
           + FR+ ED+ Q    N + A   +I  LC    +   AS+V+ V+  +G TP+++ +N +
Sbjct: 131 QAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVLMFNLV 190

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS--- 237
           ++G CK      AY+LLE  I+ G +P+  T+ +L+ GLC  + + +A+++L+ M++   
Sbjct: 191 INGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVTGGC 250

Query: 238 ----------------KKDVDRT---------RIC-------NIYLRALCLIKNPTELLN 265
                           +  VD           R C       NI +  LC  K   E   
Sbjct: 251 SPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQ 310

Query: 266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 325
           +   M +T C PD+IT N++I+G CK  +++EA ++   +      A +AVT++T+  G 
Sbjct: 311 LYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGY 370

Query: 326 LNVGRIQEALNLLYQVMPQRGYSPGIVTY------------------------------- 354
             +GR+ +A   ++ ++  +G+SP + TY                               
Sbjct: 371 AALGRMADACR-IFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVELVEEMASKGFPPR 429

Query: 355 ----NAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD 410
               +AVL GLF     E A ++F+ M   G   D+  Y +V++G+  +++ ++A    +
Sbjct: 430 VNTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMARASKHNKALAVLE 489

Query: 411 DIVWPSNIHDNYVYA---AMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGAC 467
            ++   +   N   +   A+++ LC+ G+  +A   L+++ + G    +  YN ++ G  
Sbjct: 490 QVIDKRDRKFNPSSSAVDALVESLCQVGRTDDAKQLLHKMSERGFAAAVSSYNGLLSGLS 549

Query: 468 KLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           +L    EA Q+   M   G  P+  T  ++
Sbjct: 550 RLQRWDEATQVFEAMVSAGPAPEISTVNVV 579



 Score =  187 bits (476), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 127/474 (26%), Positives = 233/474 (49%), Gaps = 10/474 (2%)

Query: 26  VPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANV 85
           +PN  +Y  LI G+   G++D+A ++ +EM+  G   N++ ++ L++G+     V  A  
Sbjct: 6   MPNKFTYGILIRGFSSAGDLDIAIQLLEEMKSNGFEGNAVVHTTLMKGLCDAGRVVEA-- 63

Query: 86  LMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHM 145
               L       +D + +   +  LV +LC+ G  +E   +  +M       +      +
Sbjct: 64  ----LEHFRAMAKDCAPDVMTYTALVHALCKAGKFDEAQGMLREMIARGCAPDTVTFSTL 119

Query: 146 IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLC-KHGGCMRAYQLLEEGIQFG 204
           ID LC+ G    A RV+  + +RG+  S  ++ +I+  LC K+     A ++L   I  G
Sbjct: 120 IDGLCKFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKG 179

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL 264
           + P+   + +++ G C   DL+ A K+L+ M+ K  V       I +  LC      E  
Sbjct: 180 FTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQ 239

Query: 265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 324
            +L  M+   C P+V+T +TVING CK G++++A ++   ++  + C P+ VT   +I G
Sbjct: 240 QLLEKMVTGGCSPNVVTYSTVINGLCKQGQVDDAYELFQ-LMERRNCPPNVVTHNILIDG 298

Query: 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGV-V 383
           L    RI+EA   LY  M + G +P I+TYN+++ GL +  +V+EA ++F  +   GV  
Sbjct: 299 LCKAKRIEEARQ-LYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSA 357

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
           A++ TY+ +  G     ++ +A R +  +V      D   Y ++I   C++ +  E V  
Sbjct: 358 ANAVTYSTLFHGYAALGRMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVEL 417

Query: 444 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           + E+   G  P +   + V+ G  + +    A Q+   M   G   DA+ + ++
Sbjct: 418 VEEMASKGFPPRVNTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLV 471



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 123/463 (26%), Positives = 223/463 (48%), Gaps = 46/463 (9%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC  +RVGEA +L   M + G  PNVV+Y+T+I+G C+ G++D AY++F  M      PN
Sbjct: 229 LCKANRVGEAQQLLEKMVTGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPN 288

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +T+++L+ G+ + + +E A     +L+ RM+ E   + +   + +L+D LC+   V+E 
Sbjct: 289 VVTHNILIDGLCKAKRIEEAR----QLYHRMR-ETGCAPDIITYNSLIDGLCKSFQVDEA 343

Query: 124 FRIAEDMPQ-GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
           F++ + +P+ G S         +       GR   A R+  ++  +G +P L +Y S++ 
Sbjct: 344 FQLFQTIPESGVSAANAVTYSTLFHGYAALGRMADACRIFSMLVDKGFSPDLATYTSLIL 403

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
             CK    +   +L+EE    G+ P  +T   ++ GL   +  E+A ++   M ++    
Sbjct: 404 EYCKTSRAVEVVELVEEMASKGFPPRVNTLSAVLGGLFEGNHTERAIQLFDSMAARG--- 460

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
                                           C  D +  N V+ G  +  +  +AL VL
Sbjct: 461 --------------------------------CTDDALIYNLVVEGMARASKHNKALAVL 488

Query: 303 NDMVAG---KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
             ++     KF  P +     ++  L  VGR  +A  LL++ M +RG++  + +YN +L 
Sbjct: 489 EQVIDKRDRKF-NPSSSAVDALVESLCQVGRTDDAKQLLHK-MSERGFAAAVSSYNGLLS 546

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
           GL RL+R +EA +VF  M+  G   + +T  +VI  LC + ++D+A      +       
Sbjct: 547 GLSRLQRWDEATQVFEAMVSAGPAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCP 606

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVV 462
           D      +I G C+SG+   A   L E+ ++G+ PN   ++++
Sbjct: 607 DIETCNTLIGGYCKSGRADLARKLLEEMTEAGLEPNDTTHDLL 649



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 118/489 (24%), Positives = 234/489 (47%), Gaps = 9/489 (1%)

Query: 13  AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVR 72
           A K+   + ++G  P V+ +  +I+G+C+  ++D AYK+ + M   G +PN  T+++L+ 
Sbjct: 168 ASKVLGVVIAKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILIT 227

Query: 73  GVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQ 132
           G+ +   V  A  L+ K+          S N   ++ +++ LC++G V++ + + + M +
Sbjct: 228 GLCKANRVGEAQQLLEKMVTG-----GCSPNVVTYSTVINGLCKQGQVDDAYELFQLMER 282

Query: 133 GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMR 192
                       +ID LC++ R   A ++ + MR+ G  P +++YNS++ GLCK      
Sbjct: 283 RNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDE 342

Query: 193 AYQLLEEGIQFGYLPSEH-TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYL 251
           A+QL +   + G   +   TY  L  G      +  A ++   ++ K            +
Sbjct: 343 AFQLFQTIPESGVSAANAVTYSTLFHGYAALGRMADACRIFSMLVDKGFSPDLATYTSLI 402

Query: 252 RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC 311
              C      E++ ++  M      P V TL+ V+ G  +    E A+++ + M A + C
Sbjct: 403 LEYCKTSRAVEVVELVEEMASKGFPPRVNTLSAVLGGLFEGNHTERAIQLFDSM-AARGC 461

Query: 312 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG--YSPGIVTYNAVLRGLFRLRRVEE 369
             DA+ +  ++ G+    +  +AL +L QV+ +R   ++P     +A++  L ++ R ++
Sbjct: 462 TDDALIYNLVVEGMARASKHNKALAVLEQVIDKRDRKFNPSSSAVDALVESLCQVGRTDD 521

Query: 370 AKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIK 429
           AK++ + M   G  A  ++Y  ++ GL    + DEA + ++ +V      +      +I 
Sbjct: 522 AKQLLHKMSERGFAAAVSSYNGLLSGLSRLQRWDEATQVFEAMVSAGPAPEISTVNVVIS 581

Query: 430 GLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNP 489
            LC + K+ +A   +  +   G  P+I   N +I G CK      A ++L EM + GL P
Sbjct: 582 WLCSAAKVDDAYELVQRMSKLGCCPDIETCNTLIGGYCKSGRADLARKLLEEMTEAGLEP 641

Query: 490 DAVTWRILD 498
           +  T  +L+
Sbjct: 642 NDTTHDLLE 650



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/224 (29%), Positives = 122/224 (54%), Gaps = 4/224 (1%)

Query: 275 CQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEA 334
           C P+  T   +I GF   G ++ A+++L +M +  F   +AV  TT++ GL + GR+ EA
Sbjct: 5   CMPNKFTYGILIRGFSSAGDLDIAIQLLEEMKSNGF-EGNAVVHTTLMKGLCDAGRVVEA 63

Query: 335 LNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVID 394
           L   ++ M  +  +P ++TY A++  L +  + +EA+ +   M+  G   D+ T++ +ID
Sbjct: 64  LE-HFRAMA-KDCAPDVMTYTALVHALCKAGKFDEAQGMLREMIARGCAPDTVTFSTLID 121

Query: 395 GLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLC-RSGKIHEAVHFLYELVDSGVT 453
           GLC+    ++A R  +D++     + +  +  +I+ LC +   +  A   L  ++  G T
Sbjct: 122 GLCKFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFT 181

Query: 454 PNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           P ++ +N+VI+G CK      AY++L  M + G  P+  T+ IL
Sbjct: 182 PTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTIL 225


>gi|326500244|dbj|BAK06211.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 600

 Score =  208 bits (530), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 132/481 (27%), Positives = 242/481 (50%), Gaps = 43/481 (8%)

Query: 27  PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVL 86
           PN +SYTTL+   C       A  +   M+ CGV P+ +TY  L+RG+    DV+ A  L
Sbjct: 92  PNAISYTTLMRALCADRRAAQAVGLLRSMQDCGVRPDVVTYGTLIRGLCDAADVDTAVEL 151

Query: 87  MFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFAC-GHM 145
           + ++ E       +  N   ++ L+   C+ G    V ++ E+M  G+ +  +      +
Sbjct: 152 LNEMCE-----SGIEPNVVVYSCLLHGYCKTGRWESVGKVFEEM-SGRGIEPDVVMYTAL 205

Query: 146 IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY 205
           IDSLCR G+   A+RV+ +M +RGL P++V+YN +++ +CK G    A  L +   + G 
Sbjct: 206 IDSLCRHGKVKKAARVMDMMTERGLEPNVVTYNVLINSMCKEGSVREALDLRKNMSEKGV 265

Query: 206 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 265
            P   TY  L+ GL    ++++A  +L+ M+                             
Sbjct: 266 QPDVVTYNTLITGLSSVLEMDEAMALLEEMMQG--------------------------- 298

Query: 266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 325
                 +T+ +PD++T N+VI+G CK+G + +AL+V   M+A   C  + V F  +I GL
Sbjct: 299 ------ETRVRPDLMTFNSVIHGLCKIGWMRQALQV-RAMMAENGCRCNLVAFNLLIGGL 351

Query: 326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 385
           L V ++++A+ L+ + M   G  P   TY+ ++ G  ++R+VE A+   + M   G+  +
Sbjct: 352 LRVHKVKKAMELMDE-MASSGLQPDSFTYSILINGFCKMRQVERAESYLSEMRHQGMEPE 410

Query: 386 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY 445
              Y  ++  +C+   + +A+  ++++     + D   Y+ MI G  +SG+   A  FL 
Sbjct: 411 PVHYIPLLKAMCDQGMMGQARDLFNEMDRNCKL-DAAAYSTMIHGAFKSGEKKIAEEFLK 469

Query: 446 ELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
           +++D G+ P+ V Y++ I+   K      A ++L++M  +G  PD   +  L + +G +G
Sbjct: 470 DMIDEGLIPDAVTYSIPINMFAKSGDLAAAERVLKQMTASGFVPDVAVFDSLIQGYGAKG 529

Query: 506 N 506
           +
Sbjct: 530 D 530



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 117/467 (25%), Positives = 209/467 (44%), Gaps = 47/467 (10%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC  + V  A +L  +M   G  PNVV Y+ L+HGYC+TG  +   KVF+EM   G+ P+
Sbjct: 139 LCDAADVDTAVELLNEMCESGIEPNVVVYSCLLHGYCKTGRWESVGKVFEEMSGRGIEPD 198

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            + Y+ L+  + R   V++A  +M  + ER      L  N   +  L++S+C+EG V E 
Sbjct: 199 VVMYTALIDSLCRHGKVKKAARVMDMMTER-----GLEPNVVTYNVLINSMCKEGSVREA 253

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             + ++M +                                   +G+ P +V+YN+++ G
Sbjct: 254 LDLRKNMSE-----------------------------------KGVQPDVVTYNTLITG 278

Query: 184 LCKHGGCMRAYQLLEEGIQ--FGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
           L        A  LLEE +Q      P   T+  ++ GLC    + +A +V   M      
Sbjct: 279 LSSVLEMDEAMALLEEMMQGETRVRPDLMTFNSVIHGLCKIGWMRQALQVRAMMAENGCR 338

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
                 N+ +  L  +    + + ++  M  +  QPD  T + +INGFCKM ++E A   
Sbjct: 339 CNLVAFNLLIGGLLRVHKVKKAMELMDEMASSGLQPDSFTYSILINGFCKMRQVERAESY 398

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
           L++M   +   P+ V +  ++  + + G + +A +L  ++   R        Y+ ++ G 
Sbjct: 399 LSEM-RHQGMEPEPVHYIPLLKAMCDQGMMGQARDLFNEM--DRNCKLDAAAYSTMIHGA 455

Query: 362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
           F+    + A+E    M+  G++ D+ TY+I I+   +S  L  A+R    +     + D 
Sbjct: 456 FKSGEKKIAEEFLKDMIDEGLIPDAVTYSIPINMFAKSGDLAAAERVLKQMTASGFVPDV 515

Query: 422 YVYAAMIKGLCRSGKIHEAVHFLYELV--DSGVTPNIVCYNVVIDGA 466
            V+ ++I+G    G   + +    E+   D  + P I+   V   GA
Sbjct: 516 AVFDSLIQGYGAKGDTEKILELTREMTAKDVALDPKIISTIVTSLGA 562



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 98/367 (26%), Positives = 184/367 (50%), Gaps = 21/367 (5%)

Query: 149 LCRSGRNHGASRVVYVMRKRGL--TPSL----------VSYNSIVHGLCKHGGCMRA--- 193
           L R GR   A+R+   +R   L  +P+L          VSYN+++  LC+ G C+ A   
Sbjct: 19  LLRRGRGEAAARLNRHLRLLPLPESPALLSALPSVRDAVSYNTVLAALCRQG-CLDAALF 77

Query: 194 -YQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLR 252
             +++    +    P+  +Y  L+  LC +    +A  +L+ M               +R
Sbjct: 78  LLRVMSHEPRLASRPNAISYTTLMRALCADRRAAQAVGLLRSMQDCGVRPDVVTYGTLIR 137

Query: 253 ALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCA 312
            LC   +    + +L  M ++  +P+V+  + +++G+CK GR E   KV  +M +G+   
Sbjct: 138 GLCDAADVDTAVELLNEMCESGIEPNVVVYSCLLHGYCKTGRWESVGKVFEEM-SGRGIE 196

Query: 313 PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKE 372
           PD V +T +I  L   G++++A  ++  +M +RG  P +VTYN ++  + +   V EA +
Sbjct: 197 PDVVMYTALIDSLCRHGKVKKAARVM-DMMTERGLEPNVVTYNVLINSMCKEGSVREALD 255

Query: 373 VFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI--HDNYVYAAMIKG 430
           +   M   GV  D  TY  +I GL    ++DEA    ++++        D   + ++I G
Sbjct: 256 LRKNMSEKGVQPDVVTYNTLITGLSSVLEMDEAMALLEEMMQGETRVRPDLMTFNSVIHG 315

Query: 431 LCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD 490
           LC+ G + +A+     + ++G   N+V +N++I G  ++   ++A +++ EM  +GL PD
Sbjct: 316 LCKIGWMRQALQVRAMMAENGCRCNLVAFNLLIGGLLRVHKVKKAMELMDEMASSGLQPD 375

Query: 491 AVTWRIL 497
           + T+ IL
Sbjct: 376 SFTYSIL 382



 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 102/411 (24%), Positives = 190/411 (46%), Gaps = 43/411 (10%)

Query: 101 SVNNA-AFANLVDSLCREGYVNE---VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNH 156
           SV +A ++  ++ +LCR+G ++    + R+    P+  S     +   ++ +LC   R  
Sbjct: 52  SVRDAVSYNTVLAALCRQGCLDAALFLLRVMSHEPRLASRPNAISYTTLMRALCADRRAA 111

Query: 157 GASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLV 216
            A  ++  M+  G+ P +V+Y +++ GLC       A +LL E  + G  P+   Y  L+
Sbjct: 112 QAVGLLRSMQDCGVRPDVVTYGTLIRGLCDAADVDTAVELLNEMCESGIEPNVVVYSCLL 171

Query: 217 EGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQ 276
            G C     E   KV + M  +                                     +
Sbjct: 172 HGYCKTGRWESVGKVFEEMSGRG-----------------------------------IE 196

Query: 277 PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALN 336
           PDV+    +I+  C+ G++++A +V+ DM+  +   P+ VT+  +I  +   G ++EAL+
Sbjct: 197 PDVVMYTALIDSLCRHGKVKKAARVM-DMMTERGLEPNVVTYNVLINSMCKEGSVREALD 255

Query: 337 LLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG--IGVVADSTTYAIVID 394
           L  + M ++G  P +VTYN ++ GL  +  ++EA  +   M+     V  D  T+  VI 
Sbjct: 256 L-RKNMSEKGVQPDVVTYNTLITGLSSVLEMDEAMALLEEMMQGETRVRPDLMTFNSVIH 314

Query: 395 GLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTP 454
           GLC+   + +A +    +       +   +  +I GL R  K+ +A+  + E+  SG+ P
Sbjct: 315 GLCKIGWMRQALQVRAMMAENGCRCNLVAFNLLIGGLLRVHKVKKAMELMDEMASSGLQP 374

Query: 455 NIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
           +   Y+++I+G CK+     A   L EMR  G+ P+ V +  L K   ++G
Sbjct: 375 DSFTYSILINGFCKMRQVERAESYLSEMRHQGMEPEPVHYIPLLKAMCDQG 425


>gi|302757207|ref|XP_002962027.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
 gi|300170686|gb|EFJ37287.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
          Length = 814

 Score =  208 bits (530), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 130/491 (26%), Positives = 241/491 (49%), Gaps = 13/491 (2%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCG-VLPNSLTY 67
           R  +A   F  MK +   P++ ++  L+   C+ G  + A++VF EM   G V P+   +
Sbjct: 169 RADDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALH 228

Query: 68  SVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIA 127
           + +VR +L+ + V+ A  +  ++     E+     +  A+  ++D L + G+  E  ++ 
Sbjct: 229 TAMVRTLLKAKRVKEAREVFGQM-----EKCGFPPDAIAYNTMIDGLAKAGHAQEALKVL 283

Query: 128 EDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKH 187
           ++M     V  E   G +++SLC++G    A  +  VM   G  P+ V Y S++HG  K 
Sbjct: 284 DNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKS 343

Query: 188 GGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC 247
           G    A  L +E ++ GY P   T+ V+++GLC   + E+A K  + M+           
Sbjct: 344 GRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTY 403

Query: 248 NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA 307
              ++ L  I        ++  M+   C PD +T   +++GFCK+GR++EA ++L+++  
Sbjct: 404 TTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDK 463

Query: 308 GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQV--MPQRGYSPGIVTYNAVLRGLFRLR 365
               +P+   +++++ GL + G ++  L+ L++          PG+    +++ GL +  
Sbjct: 464 CS-SSPNLQLYSSLVKGLCDGGSVENTLDDLFEQSKAAAENLDPGLCC--SIIVGLCKTG 520

Query: 366 RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCES--NQLDEAKRFWDDIVWPSNIHDNYV 423
           R++EA  +F  M+  G   D+TTY I+I+GLC S  N+++ A     D+     + D   
Sbjct: 521 RLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEMVGYLPDAVT 580

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y  +  GLC+ G++  AV  L E    G   ++V Y  +  G C       A  + +EM 
Sbjct: 581 YTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMV 640

Query: 484 KNGLNPDAVTW 494
           + G  PDA  +
Sbjct: 641 RQGGAPDAAAY 651



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 137/481 (28%), Positives = 235/481 (48%), Gaps = 17/481 (3%)

Query: 24  GHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERA 83
           G   +V +Y  L++           Y + +EM   G+ PN+ ++++L+R   RTR  + A
Sbjct: 114 GFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRADDA 173

Query: 84  NVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFAC- 142
            V  F++ +R + + DL      F  LVD LC+ G   + F +  +M     V  + A  
Sbjct: 174 -VTCFEIMKRKRCKPDLHT----FLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALH 228

Query: 143 GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQ 202
             M+ +L ++ R   A  V   M K G  P  ++YN+++ GL K G    A ++L+  + 
Sbjct: 229 TAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLA 288

Query: 203 FGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTE 262
              +P+E TY +LV  LC    LE+A ++ + M +      + I    +          E
Sbjct: 289 KACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKE 348

Query: 263 LLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTII 322
             ++   M++   +PDVIT   +I+G CK G  E+A K   +M+ G  C P+ VT+TTII
Sbjct: 349 ACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGG-CKPNVVTYTTII 407

Query: 323 FGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGV 382
            GL  +GR+  A  ++ + M   G  P  VTY  +L G  +L R++EA ++ + +     
Sbjct: 408 QGLSKIGRVANAFRIM-KGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSS 466

Query: 383 VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH----DNYVYAAMIKGLCRSGKIH 438
             +   Y+ ++ GLC+   ++      DD+   S       D  +  ++I GLC++G++ 
Sbjct: 467 SPNLQLYSSLVKGLCDGGSVENT---LDDLFEQSKAAAENLDPGLCCSIIVGLCKTGRLD 523

Query: 439 EAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKR--EAYQILREMRKNGLNPDAVTWRI 496
           EA      +V  G  P+   YN++I+G C+    R   A+ +L ++   G  PDAVT+  
Sbjct: 524 EACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEMVGYLPDAVTYTP 583

Query: 497 L 497
           L
Sbjct: 584 L 584



 Score =  202 bits (514), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 138/496 (27%), Positives = 242/496 (48%), Gaps = 16/496 (3%)

Query: 6   GLSRVG---EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           GL++ G   EA K+  +M ++  VP  V+Y  L++  C+ G ++ A ++F  M   G  P
Sbjct: 269 GLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRP 328

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           NS+ Y+ L+ G  ++  ++ A  L  ++ E     + ++        ++D LC+ G   +
Sbjct: 329 NSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVIT-----HTVMIDGLCKSGNFEQ 383

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
             +  E+M +G           +I  L + GR   A R++  M   G  P  V+Y  ++ 
Sbjct: 384 AAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLD 443

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVL--QFMLSKKD 240
           G CK G    A QLL+E  +    P+   Y  LV+GLC    +E     L  Q   + ++
Sbjct: 444 GFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVKGLCDGGSVENTLDDLFEQSKAAAEN 503

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKM--GRIEEA 298
           +D    C+I +  LC      E   +   M+   C+PD  T N +ING C+    R+E A
Sbjct: 504 LDPGLCCSIIV-GLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERA 562

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
             +L+D+    +  PDAVT+T +  GL  +G +  A+ +L +    RG++  +V Y A+ 
Sbjct: 563 FALLHDLEMVGY-LPDAVTYTPLCIGLCKIGEVDRAVKMLEEA-SSRGWNADVVAYTALC 620

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
            GL    +V+ A  +F  M+  G   D+  Y  +I+GL +  +L++A +F+D+++     
Sbjct: 621 TGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKGKKLEDACKFFDEMIGKGQK 680

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG-VTPNIVCYNVVIDGACKLSMKREAYQ 477
                Y A+++ LC +G + EA H    ++  G +  +++ Y+ +I G CK      A +
Sbjct: 681 PTVATYTALVQALCHAGNVDEAFHRFEGMLARGELVGSVMIYDALIHGFCKALKVDAALK 740

Query: 478 ILREMRKNGLNPDAVT 493
           +  +M   G  P AVT
Sbjct: 741 LFEDMISRGNVPTAVT 756



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 128/481 (26%), Positives = 219/481 (45%), Gaps = 10/481 (2%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           RV EA ++F  M+  G  P+ ++Y T+I G  + G    A KV D M     +P  +TY 
Sbjct: 240 RVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYG 299

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
           +LV  + +   +ERA  L      R+        N+  + +L+    + G + E   + +
Sbjct: 300 ILVNSLCKAGTLERAEELF-----RVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFD 354

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
           +M +     +      MID LC+SG    A++    M + G  P++V+Y +I+ GL K G
Sbjct: 355 EMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIG 414

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
               A+++++  I  G  P   TY  L++G C    L++A ++L  +         ++ +
Sbjct: 415 RVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYS 474

Query: 249 IYLRALCLIKNPTELLNVLVFMLQTQCQP-DVITLNTVINGFCKMGRIEEALKVLNDMVA 307
             ++ LC   +    L+ L    +   +  D     ++I G CK GR++EA ++   MV+
Sbjct: 475 SLVKGLCDGGSVENTLDDLFEQSKAAAENLDPGLCCSIIVGLCKTGRLDEACRIFQRMVS 534

Query: 308 GKFCAPDAVTFTTIIFGLLNV--GRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLR 365
            + C PDA T+  +I GL      R++ A  LL+  +   GY P  VTY  +  GL ++ 
Sbjct: 535 -EGCKPDATTYNILINGLCRSRENRVERAFALLHD-LEMVGYLPDAVTYTPLCIGLCKIG 592

Query: 366 RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYA 425
            V+ A ++       G  AD   Y  +  GLC   Q+D A   + ++V      D   Y 
Sbjct: 593 EVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYC 652

Query: 426 AMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN 485
            +I GL +  K+ +A  F  E++  G  P +  Y  ++   C      EA+     M   
Sbjct: 653 CIINGLIKGKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFEGMLAR 712

Query: 486 G 486
           G
Sbjct: 713 G 713



 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 125/471 (26%), Positives = 218/471 (46%), Gaps = 56/471 (11%)

Query: 71  VRGVLRTRDVERANVLMFKLW--ERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
           V  VLR+  V    +  F+ W  E+   + D+   N     L++ L  E   ++ + I E
Sbjct: 89  VAAVLRSLKVTGTAISFFR-WAGEQAGFQHDVFTYNC----LMNLLVAEKNYSQCYAIHE 143

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
           +M +       F+   +I S  R+ R   A     +M+++   P L ++  +V  LCK G
Sbjct: 144 EMLKAGIAPNTFSFNILIRSFARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAG 203

Query: 189 GCMRAYQLLEEGIQFGYLPSE---HT---------------------------------Y 212
              +A+++  E +  G++P +   HT                                 Y
Sbjct: 204 MDEKAFEVFHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAY 263

Query: 213 KVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALC---LIKNPTELLNVLVF 269
             +++GL      ++A KVL  ML+K  V       I + +LC    ++   EL  V   
Sbjct: 264 NTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRV--- 320

Query: 270 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG 329
           M  +  +P+ +   ++I+GF K GR++EA  + ++MV   +  PD +T T +I GL   G
Sbjct: 321 MAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGY-RPDVITHTVMIDGLCKSG 379

Query: 330 RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTY 389
             ++A     ++M + G  P +VTY  +++GL ++ RV  A  +   M+  G   DS TY
Sbjct: 380 NFEQAAKSFEEMM-RGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTY 438

Query: 390 AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449
             ++DG C+  +LDEA +  D++   S+  +  +Y++++KGLC  G +   +  L+E   
Sbjct: 439 ICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVKGLCDGGSVENTLDDLFEQSK 498

Query: 450 SG---VTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           +    + P + C   +I G CK     EA +I + M   G  PDA T+ IL
Sbjct: 499 AAAENLDPGLCCS--IIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNIL 547



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 124/444 (27%), Positives = 213/444 (47%), Gaps = 23/444 (5%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC      +A K F +M   G  PNVV+YTT+I G  + G +  A+++   M   G 
Sbjct: 372 IDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGC 431

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+S+TY  L+ G  +   ++ A  L+ +L     ++   S N   +++LV  LC  G V
Sbjct: 432 FPDSVTYICLLDGFCKLGRLDEAAQLLDEL-----DKCSSSPNLQLYSSLVKGLCDGGSV 486

Query: 121 NEVFRIAEDMPQGKSVNEEF---ACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
                + +   Q K+  E      C  +I  LC++GR   A R+   M   G  P   +Y
Sbjct: 487 ENT--LDDLFEQSKAAAENLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTY 544

Query: 178 NSIVHGLCK--HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM 235
           N +++GLC+       RA+ LL +    GYLP   TY  L  GLC   ++++A K+L+  
Sbjct: 545 NILINGLCRSRENRVERAFALLHDLEMVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEA 604

Query: 236 LSK----KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK 291
            S+      V  T +C      LC        +++   M++    PD      +ING  K
Sbjct: 605 SSRGWNADVVAYTALCT----GLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIK 660

Query: 292 MGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG- 350
             ++E+A K  ++M+ GK   P   T+T ++  L + G + EA +  ++ M  RG   G 
Sbjct: 661 GKKLEDACKFFDEMI-GKGQKPTVATYTALVQALCHAGNVDEAFHR-FEGMLARGELVGS 718

Query: 351 IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD 410
           ++ Y+A++ G  +  +V+ A ++F  M+  G V  + T A + DGL  S + ++A+    
Sbjct: 719 VMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQELLQ 778

Query: 411 DIVWPSNIHDNYVYAAMIKGLCRS 434
           ++    +      + A++ GL +S
Sbjct: 779 EMAAGGSPPHAATFTAILDGLRKS 802


>gi|255551759|ref|XP_002516925.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223544013|gb|EEF45539.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 901

 Score =  208 bits (530), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 128/480 (26%), Positives = 229/480 (47%), Gaps = 8/480 (1%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           R+GEA + F +MK +   PN+ +Y  LI   C+ GE++ A+KV D M+  G+ PN +T +
Sbjct: 388 RLGEALRTFEEMK-KDAAPNLSTYNVLIDMLCKAGEVEAAFKVRDAMKEAGLFPNVMTVN 446

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
           +++  + + + ++ A  +   +  ++      S +   F +L+D L ++G V++ +R+ E
Sbjct: 447 IMIDRLCKAKKLDEACSIFEGMNHKI-----CSPDEVTFCSLIDGLGKQGRVDDAYRLYE 501

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
            M     +        +I S  + GR     ++   M  RG +P L   N+ +  + K G
Sbjct: 502 QMLDSDKIPNAVVYTSLIKSFFKCGRKEDGHKIFKEMIHRGCSPDLRLLNAYMDCVFKAG 561

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
              +   L EE    G++P   +Y +L+ GL       +  ++   M  +  V  T   N
Sbjct: 562 ETGKGRALFEEIKSRGFIPDVMSYSILIHGLVKAGFARETYELFYAMKEQGCVLDTHAYN 621

Query: 249 IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 308
            ++   C      +   +L  M     QP V+T  +VI+G  K+ R++EA  +  +  + 
Sbjct: 622 TFIDGFCKSGKVNKAYQLLEEMKTKGRQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSN 681

Query: 309 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE 368
                + V ++++I G   VGRI EA  ++ ++M Q+G +P + T+N +L  L +   + 
Sbjct: 682 GL-ELNVVIYSSLIDGFGKVGRIDEAYLIMEELM-QKGLTPNVYTWNCLLDALVKAEEIN 739

Query: 369 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI 428
           EA   F  M  +    +  TY+I+I+GLC   + ++A  FW ++       +   Y  MI
Sbjct: 740 EALVCFQNMKNLKGTPNHITYSILINGLCRVRKFNKAFVFWQEMQKQGLKPNTITYTTMI 799

Query: 429 KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLN 488
            GL ++G I EA         +G  P+   YN +I+G        EAY+I  E R  G N
Sbjct: 800 AGLAKAGNIAEASSLFERFKANGGVPDSASYNAIIEGLSYSRRAMEAYKIFEETRMKGCN 859



 Score =  194 bits (494), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 137/503 (27%), Positives = 238/503 (47%), Gaps = 11/503 (2%)

Query: 6   GLSRVGEAH---KLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
            LS V E+     LF  M+  G+  +V  +TT+I  + R G +D A  + DEM+   +  
Sbjct: 207 ALSSVQESDIMLTLFHQMQELGYEVSVHLFTTVIRVFAREGRLDAALSLLDEMKSNCLHA 266

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           + + Y+V +    +   V+ A    +K +  +K    L  ++  + +++  LC+   ++E
Sbjct: 267 DIVLYNVCIDCFGKAGKVDMA----WKFFHEIKSH-GLLPDDVTYTSMIGVLCKGNRLDE 321

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
              I E M Q ++V   +A   MI     +G+   A  ++   + RG  PS+++YN I+ 
Sbjct: 322 AVEIFEQMEQNRNVPCAYAYNTMIMGYGSAGKFDEAYSLLERQKARGCIPSVIAYNCILT 381

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
            L K G    A +  EE ++    P+  TY VL++ LC   ++E A KV   M       
Sbjct: 382 CLGKKGRLGEALRTFEE-MKKDAAPNLSTYNVLIDMLCKAGEVEAAFKVRDAMKEAGLFP 440

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
                NI +  LC  K   E  ++   M    C PD +T  ++I+G  K GR+++A ++ 
Sbjct: 441 NVMTVNIMIDRLCKAKKLDEACSIFEGMNHKICSPDEVTFCSLIDGLGKQGRVDDAYRLY 500

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
             M+      P+AV +T++I      GR ++  + +++ M  RG SP +   NA +  +F
Sbjct: 501 EQMLDSDKI-PNAVVYTSLIKSFFKCGRKEDG-HKIFKEMIHRGCSPDLRLLNAYMDCVF 558

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
           +     + + +F  +   G + D  +Y+I+I GL ++    E    +  +     + D +
Sbjct: 559 KAGETGKGRALFEEIKSRGFIPDVMSYSILIHGLVKAGFARETYELFYAMKEQGCVLDTH 618

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
            Y   I G C+SGK+++A   L E+   G  P +V Y  VIDG  K+    EAY +  E 
Sbjct: 619 AYNTFIDGFCKSGKVNKAYQLLEEMKTKGRQPTVVTYGSVIDGLAKIDRLDEAYMLFEEA 678

Query: 483 RKNGLNPDAVTWRILDKLHGNRG 505
           + NGL  + V +  L    G  G
Sbjct: 679 KSNGLELNVVIYSSLIDGFGKVG 701



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 128/507 (25%), Positives = 246/507 (48%), Gaps = 16/507 (3%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC  +R+ EA ++F  M+   +VP   +Y T+I GY   G+ D AY + +  +  G +P+
Sbjct: 313 LCKGNRLDEAVEIFEQMEQNRNVPCAYAYNTMIMGYGSAGKFDEAYSLLERQKARGCIPS 372

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            + Y+ ++  + +   +  A     + +E MK+  D + N + +  L+D LC+ G V   
Sbjct: 373 VIAYNCILTCLGKKGRLGEA----LRTFEEMKK--DAAPNLSTYNVLIDMLCKAGEVEAA 426

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           F++ + M +            MID LC++ +   A  +   M  +  +P  V++ S++ G
Sbjct: 427 FKVRDAMKEAGLFPNVMTVNIMIDRLCKAKKLDEACSIFEGMNHKICSPDEVTFCSLIDG 486

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGL--CGESDLEKARKVLQFMLSKKDV 241
           L K G    AY+L E+ +    +P+   Y  L++    CG    E   K+ + M+ +   
Sbjct: 487 LGKQGRVDDAYRLYEQMLDSDKIPNAVVYTSLIKSFFKCGRK--EDGHKIFKEMIHRGCS 544

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVF--MLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
              R+ N Y+   C+ K         +F  +      PDV++ + +I+G  K G   E  
Sbjct: 545 PDLRLLNAYMD--CVFKAGETGKGRALFEEIKSRGFIPDVMSYSILIHGLVKAGFARETY 602

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           ++   M   + C  D   + T I G    G++ +A  LL + M  +G  P +VTY +V+ 
Sbjct: 603 ELFYAM-KEQGCVLDTHAYNTFIDGFCKSGKVNKAYQLLEE-MKTKGRQPTVVTYGSVID 660

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
           GL ++ R++EA  +F      G+  +   Y+ +IDG  +  ++DEA    ++++      
Sbjct: 661 GLAKIDRLDEAYMLFEEAKSNGLELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTP 720

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           + Y +  ++  L ++ +I+EA+     + +   TPN + Y+++I+G C++    +A+   
Sbjct: 721 NVYTWNCLLDALVKAEEINEALVCFQNMKNLKGTPNHITYSILINGLCRVRKFNKAFVFW 780

Query: 480 REMRKNGLNPDAVTWRILDKLHGNRGN 506
           +EM+K GL P+ +T+  +       GN
Sbjct: 781 QEMQKQGLKPNTITYTTMIAGLAKAGN 807



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 108/436 (24%), Positives = 201/436 (46%), Gaps = 34/436 (7%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D+LC   ++ EA  +F  M  +   P+ V++ +LI G  + G +D AY+++++M     
Sbjct: 449 IDRLCKAKKLDEACSIFEGMNHKICSPDEVTFCSLIDGLGKQGRVDDAYRLYEQMLDSDK 508

Query: 61  LPNSLTYSVLVRGVLR-------------------TRDVERANVLM---FK--------- 89
           +PN++ Y+ L++   +                   + D+   N  M   FK         
Sbjct: 509 IPNAVVYTSLIKSFFKCGRKEDGHKIFKEMIHRGCSPDLRLLNAYMDCVFKAGETGKGRA 568

Query: 90  LWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSL 149
           L+E +K    +  +  +++ L+  L + G+  E + +   M +   V +  A    ID  
Sbjct: 569 LFEEIKSRGFIP-DVMSYSILIHGLVKAGFARETYELFYAMKEQGCVLDTHAYNTFIDGF 627

Query: 150 CRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSE 209
           C+SG+ + A +++  M+ +G  P++V+Y S++ GL K      AY L EE    G   + 
Sbjct: 628 CKSGKVNKAYQLLEEMKTKGRQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGLELNV 687

Query: 210 HTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVF 269
             Y  L++G      +++A  +++ ++ K         N  L AL   +   E L     
Sbjct: 688 VIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALVCFQN 747

Query: 270 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG 329
           M   +  P+ IT + +ING C++ +  +A     +M   +   P+ +T+TT+I GL   G
Sbjct: 748 MKNLKGTPNHITYSILINGLCRVRKFNKAFVFWQEM-QKQGLKPNTITYTTMIAGLAKAG 806

Query: 330 RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTY 389
            I EA + L++     G  P   +YNA++ GL   RR  EA ++F      G    + T 
Sbjct: 807 NIAEA-SSLFERFKANGGVPDSASYNAIIEGLSYSRRAMEAYKIFEETRMKGCNIHTKTC 865

Query: 390 AIVIDGLCESNQLDEA 405
             ++D L +   L++A
Sbjct: 866 IALLDALQKDECLEQA 881



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 99/437 (22%), Positives = 180/437 (41%), Gaps = 43/437 (9%)

Query: 70  LVRGVLR-TRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
           LV GVLR  +DV +A +  F+  ER   + D ++   A+ +L+  + +    +   +I  
Sbjct: 97  LVIGVLRRAKDVNQA-ISYFRWTER---KTDQALCPEAYDSLLLVMAKNVKFDYFEQILG 152

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
           +M           C  +I S  +S +      ++  MRK    P+  +Y +++  L    
Sbjct: 153 EMSIAGFGPSTKTCIELILSCIKSNKLREGFDLIQCMRKFKFRPAFSAYTTLIGALSSVQ 212

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
                  L  +  + GY  S H +  ++     E  L+ A  +L  M S           
Sbjct: 213 ESDIMLTLFHQMQELGYEVSVHLFTTVIRVFAREGRLDAALSLLDEMKSN---------- 262

Query: 249 IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 308
                 CL                     D++  N  I+ F K G+++ A K  +++ + 
Sbjct: 263 ------CL-------------------HADIVLYNVCIDCFGKAGKVDMAWKFFHEIKSH 297

Query: 309 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE 368
               PD VT+T++I  L    R+ EA+ +  Q M Q    P    YN ++ G     + +
Sbjct: 298 GLL-PDDVTYTSMIGVLCKGNRLDEAVEIFEQ-MEQNRNVPCAYAYNTMIMGYGSAGKFD 355

Query: 369 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI 428
           EA  +       G +     Y  ++  L +  +L EA R ++++   +  + +  Y  +I
Sbjct: 356 EAYSLLERQKARGCIPSVIAYNCILTCLGKKGRLGEALRTFEEMKKDAAPNLS-TYNVLI 414

Query: 429 KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLN 488
             LC++G++  A      + ++G+ PN++  N++ID  CK     EA  I   M     +
Sbjct: 415 DMLCKAGEVEAAFKVRDAMKEAGLFPNVMTVNIMIDRLCKAKKLDEACSIFEGMNHKICS 474

Query: 489 PDAVTWRILDKLHGNRG 505
           PD VT+  L    G +G
Sbjct: 475 PDEVTFCSLIDGLGKQG 491



 Score = 43.1 bits (100), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 3/97 (3%)

Query: 4   LCGLSRVG---EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           + GL++ G   EA  LF   K+ G VP+  SY  +I G   +     AYK+F+E R  G 
Sbjct: 799 IAGLAKAGNIAEASSLFERFKANGGVPDSASYNAIIEGLSYSRRAMEAYKIFEETRMKGC 858

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEE 97
             ++ T   L+  + +   +E+A ++   L E  K +
Sbjct: 859 NIHTKTCIALLDALQKDECLEQAAIVGAVLREIAKSQ 895


>gi|222634970|gb|EEE65102.1| hypothetical protein OsJ_20158 [Oryza sativa Japonica Group]
          Length = 552

 Score =  208 bits (529), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 138/502 (27%), Positives = 239/502 (47%), Gaps = 56/502 (11%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M   G  PNV +Y  L+   C  G ++ A  V  +MR  G  PN++TY+ LV    R  +
Sbjct: 1   MVRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGE 60

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
           ++ A     ++   M+EE +   N   F ++V+ LC+ G +    ++ ++M +     + 
Sbjct: 61  LDGAE----RVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDV 116

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
            +   ++   C+ G  H +  V   M +RGL P +V++ S++H  CK G   +A  L+ +
Sbjct: 117 VSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQ 176

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
             + G   +E T+  L++G C +  L+ A      +L+   V+  R C I          
Sbjct: 177 MRERGLRMNEVTFTALIDGFCKKGFLDDA------LLA---VEEMRKCGI---------- 217

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
                           QP V+  N +ING+CK+GR++ A +++ +M A K   PD VT++
Sbjct: 218 ----------------QPSVVCYNALINGYCKLGRMDLARELIREMEA-KRVKPDVVTYS 260

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
           TII G   VG +  A   L Q M ++G  P  +TY++++RGL   +R+ +A E+F  ML 
Sbjct: 261 TIISGYCKVGNLDSAFQ-LNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQ 319

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
           +GV  D  TY  +IDG C+   +++A    D+++    + D   Y+ +I GL +S +  E
Sbjct: 320 LGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKE 379

Query: 440 AVHFLYELVDSGVTPNIVCYN---------------VVIDGACKLSMKREAYQILREMRK 484
           A   L++L      P+ + Y+                ++ G C   + +EA ++ + M  
Sbjct: 380 AHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLD 439

Query: 485 NGLNPDAVTWRILDKLHGNRGN 506
                D   + IL   H   GN
Sbjct: 440 RNWKLDGSVYSILIHGHCRGGN 461



 Score =  198 bits (504), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 138/506 (27%), Positives = 245/506 (48%), Gaps = 58/506 (11%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCG-VLP 62
           LC   R+ EA  +  DM+  G  PN V+Y TL+  +CR GE+D A +V   MR  G   P
Sbjct: 20  LCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKP 79

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           N +T++ +V G+ +   +E A     K+++ M   E L+ +  ++  L+   C+ G ++E
Sbjct: 80  NLVTFNSMVNGLCKAGRMEGAR----KVFDEMV-REGLAPDVVSYNTLLSGYCKVGCLHE 134

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
              +  +M Q   V +      +I + C++G    A  +V  MR+RGL  + V++ +++ 
Sbjct: 135 SLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALID 194

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           G CK G    A   +EE  + G  PS   Y  L+ G C    ++ AR++++ M +K+   
Sbjct: 195 GFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKR--- 251

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
                                            +PDV+T +T+I+G+CK+G ++ A + L
Sbjct: 252 --------------------------------VKPDVVTYSTIISGYCKVGNLDSAFQ-L 278

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
           N  +  K   PDA+T++++I GL    R+ +A   L++ M Q G  P   TY  ++ G  
Sbjct: 279 NQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACE-LFENMLQLGVQPDEFTYTTLIDGHC 337

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
           +   VE+A  + + M+  GV+ D  TY+++I+GL +S +  EA R    +     + DN 
Sbjct: 338 KEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNI 397

Query: 423 VY---------------AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGAC 467
            Y                A++KG C  G + EA      ++D     +   Y+++I G C
Sbjct: 398 KYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHC 457

Query: 468 KLSMKREAYQILREMRKNGLNPDAVT 493
           +    R+A    ++M ++G +P++ +
Sbjct: 458 RGGNVRKALSFHKQMLRSGFSPNSTS 483



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 134/504 (26%), Positives = 236/504 (46%), Gaps = 64/504 (12%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R+  A K+F +M   G  P+VVSY TL+ GYC+ G +  +  VF EM   G++P+
Sbjct: 91  LCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPD 150

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +T++ L+    +  ++E+A  L+ ++ ER      L +N   F  L+D  C++G++++ 
Sbjct: 151 VVTFTSLIHATCKAGNLEQAVALVAQMRER-----GLRMNEVTFTALIDGFCKKGFLDDA 205

Query: 124 FRIAEDMPQGKSVNEEFAC-GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
               E+M +   +     C   +I+  C+ GR   A  ++  M  + + P +V+Y++I+ 
Sbjct: 206 LLAVEEMRKC-GIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIIS 264

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           G CK G    A+QL ++ ++ G LP   TY  L+ GLC E  L  A              
Sbjct: 265 GYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDA-------------- 310

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
               C ++                   MLQ   QPD  T  T+I+G CK G +E+AL + 
Sbjct: 311 ----CELFEN-----------------MLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLH 349

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
           ++M+  K   PD VT++ +I GL    R +EA  LL+++  +    P  + Y+A++    
Sbjct: 350 DEMIR-KGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPV-PDNIKYDALMLCCS 407

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
           +                    A+  +   ++ G C    + EA + +  ++  +   D  
Sbjct: 408 K--------------------AEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGS 447

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
           VY+ +I G CR G + +A+ F  +++ SG +PN      ++ G  +  M  EA   ++++
Sbjct: 448 VYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEADNAIQDL 507

Query: 483 RKNGLNPDAVTWRILDKLHGNRGN 506
                  DA   + L  L+   GN
Sbjct: 508 LTCCPLADAEASKALIDLNRKEGN 531



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/342 (25%), Positives = 159/342 (46%), Gaps = 26/342 (7%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C    + +A     +M+  G  P+VV Y  LI+GYC+ G MD+A ++  EM    V
Sbjct: 193 IDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRV 252

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TYS ++ G  +  +++ A    F+L ++M ++  L  +   +++L+  LC E  +
Sbjct: 253 KPDVVTYSTIISGYCKVGNLDSA----FQLNQKMLKKGVLP-DAITYSSLIRGLCEEKRL 307

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           N+   + E+M Q     +EF    +ID  C+ G    A  +   M ++G+ P +V+Y+ +
Sbjct: 308 NDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVL 367

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++GL K      A++LL +      +P    Y  L+  LC      K+   L        
Sbjct: 368 INGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALM--LCCSKAEFKSVVAL-------- 417

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                     L+  C+     E   V   ML    + D    + +I+G C+ G + +AL 
Sbjct: 418 ----------LKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALS 467

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVM 342
               M+   F +P++ +  +++ GL   G + EA N +  ++
Sbjct: 468 FHKQMLRSGF-SPNSTSTISLVRGLFEEGMVVEADNAIQDLL 508


>gi|42408236|dbj|BAD09393.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|125601932|gb|EAZ41257.1| hypothetical protein OsJ_25765 [Oryza sativa Japonica Group]
          Length = 798

 Score =  208 bits (529), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 138/483 (28%), Positives = 237/483 (49%), Gaps = 10/483 (2%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M   G +PN +++ +L+HGYC +G+ + A  VF  M   GV P+  TY+ L+  + +   
Sbjct: 264 MVKNGAMPNRITHNSLLHGYCSSGKPNDAIGVFKRMCRDGVEPDVFTYNTLMGYLCKNGR 323

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
              A  +   + +R  +      N+A +  L+     EG + ++  + + M +     + 
Sbjct: 324 SMEARKIFDSMVKRGHKP-----NSATYGTLLHGYATEGSLVKMHHLLDMMVRNGIQPDH 378

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
           +    +I +  + G+   A  +   MR++GL P  V+Y  ++  LC  G    A      
Sbjct: 379 YIFNILIGTYTKHGKVDDAMLLFSKMRRQGLNPDTVTYGIVMDALCMVGKVDDAMAQFGR 438

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
            I  G  P    ++ L+ GLC     +KA ++   M+ +         N  L  LC    
Sbjct: 439 LISEGLTPDAVVFRNLIHGLCARDKWDKAEELAVEMIGRGICPNNIFFNTLLNHLCKEGM 498

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
                N+   M++   Q DVIT NT+I+G+C  G+++EA K+L  MV      P+ VT+ 
Sbjct: 499 VARAKNIFDLMVRVDVQRDVITYNTLIDGYCLHGKVDEAAKLLEGMVLDG-VKPNEVTYN 557

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
           T+I G    GRI++A +L  Q M  +G +PGIVTY+ +L+GLF+ RR   AKE++  M+ 
Sbjct: 558 TMINGYCKNGRIEDAFSLFRQ-MASKGVNPGIVTYSTILQGLFQARRTAAAKELYLWMIK 616

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
            G+  D  TY I++ GLC++N  D+A R + ++       +N  +  MI  L + G+  E
Sbjct: 617 SGIKFDIGTYNIILLGLCQNNCTDDALRIFQNLYLIDFHLENRTFNIMIDALLKGGRHDE 676

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
           A      L+  G+ PN+V Y +++    +  +  E   +   + KNG   ++   R+L+ 
Sbjct: 677 AKDLFASLLARGLVPNVVTYWLMMKSLIEQGLLEELDDLFLSLEKNGCTANS---RMLNA 733

Query: 500 LHG 502
           L G
Sbjct: 734 LVG 736



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 137/516 (26%), Positives = 237/516 (45%), Gaps = 49/516 (9%)

Query: 4   LCGLSRVGEAHKLFFDM-----KSRGHVPNVVSYTTLIHGYCRTG-EMDVAYKVFDEMRH 57
           LC  +R  +A  L   M        G+ P+VVSY T+I+G  R G ++D AY +FD+M  
Sbjct: 172 LCDENRSQQALHLLHTMMVADDTRGGYPPDVVSYNTVINGLLREGRQLDTAYHLFDQMLD 231

Query: 58  CGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCRE 117
            G+ P+ +TY+ ++  + + R +++A V++ ++           V N A  N        
Sbjct: 232 QGLSPDVVTYNSIISALSKARAMDKAAVVLVRM-----------VKNGAMPN-------- 272

Query: 118 GYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
                  RI  +               ++   C SG+ + A  V   M + G+ P + +Y
Sbjct: 273 -------RITHN--------------SLLHGYCSSGKPNDAIGVFKRMCRDGVEPDVFTY 311

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
           N+++  LCK+G  M A ++ +  ++ G+ P+  TY  L+ G   E  L K   +L  M+ 
Sbjct: 312 NTLMGYLCKNGRSMEARKIFDSMVKRGHKPNSATYGTLLHGYATEGSLVKMHHLLDMMVR 371

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
                   I NI +          + + +   M +    PD +T   V++  C +G++++
Sbjct: 372 NGIQPDHYIFNILIGTYTKHGKVDDAMLLFSKMRRQGLNPDTVTYGIVMDALCMVGKVDD 431

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           A+     +++ +   PDAV F  +I GL    +  +A  L  + M  RG  P  + +N +
Sbjct: 432 AMAQFGRLIS-EGLTPDAVVFRNLIHGLCARDKWDKAEELAVE-MIGRGICPNNIFFNTL 489

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 417
           L  L +   V  AK +F+ M+ + V  D  TY  +IDG C   ++DEA +  + +V    
Sbjct: 490 LNHLCKEGMVARAKNIFDLMVRVDVQRDVITYNTLIDGYCLHGKVDEAAKLLEGMVLDGV 549

Query: 418 IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQ 477
             +   Y  MI G C++G+I +A     ++   GV P IV Y+ ++ G  +      A +
Sbjct: 550 KPNEVTYNTMINGYCKNGRIEDAFSLFRQMASKGVNPGIVTYSTILQGLFQARRTAAAKE 609

Query: 478 ILREMRKNGLNPDAVTWR-ILDKLHGNRGNDFGLRI 512
           +   M K+G+  D  T+  IL  L  N   D  LRI
Sbjct: 610 LYLWMIKSGIKFDIGTYNIILLGLCQNNCTDDALRI 645



 Score =  171 bits (433), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 137/498 (27%), Positives = 223/498 (44%), Gaps = 44/498 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M  LC   R  EA K+F  M  RGH PN  +Y TL+HGY   G +   + + D M   G+
Sbjct: 315 MGYLCKNGRSMEARKIFDSMVKRGHKPNSATYGTLLHGYATEGSLVKMHHLLDMMVRNGI 374

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+   +++L+    +   V+ A +L  K+       + L+ +   +  ++D+LC  G V
Sbjct: 375 QPDHYIFNILIGTYTKHGKVDDAMLLFSKM-----RRQGLNPDTVTYGIVMDALCMVGKV 429

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +                         D++ + GR          +   GLTP  V + ++
Sbjct: 430 D-------------------------DAMAQFGR----------LISEGLTPDAVVFRNL 454

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +HGLC      +A +L  E I  G  P+   +  L+  LC E  + +A+ +   M+ + D
Sbjct: 455 IHGLCARDKWDKAEELAVEMIGRGICPNNIFFNTLLNHLCKEGMVARAKNIFDLMV-RVD 513

Query: 241 VDRTRIC-NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
           V R  I  N  +   CL     E   +L  M+    +P+ +T NT+ING+CK GRIE+A 
Sbjct: 514 VQRDVITYNTLIDGYCLHGKVDEAAKLLEGMVLDGVKPNEVTYNTMINGYCKNGRIEDAF 573

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
            +   M A K   P  VT++TI+ GL    R   A  L Y  M + G    I TYN +L 
Sbjct: 574 SLFRQM-ASKGVNPGIVTYSTILQGLFQARRTAAAKEL-YLWMIKSGIKFDIGTYNIILL 631

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
           GL +    ++A  +F  +  I    ++ T+ I+ID L +  + DEAK  +  ++    + 
Sbjct: 632 GLCQNNCTDDALRIFQNLYLIDFHLENRTFNIMIDALLKGGRHDEAKDLFASLLARGLVP 691

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           +   Y  M+K L   G + E       L  +G T N    N ++    +    R+A   L
Sbjct: 692 NVVTYWLMMKSLIEQGLLEELDDLFLSLEKNGCTANSRMLNALVGKLLQKGEVRKAGVYL 751

Query: 480 REMRKNGLNPDAVTWRIL 497
            ++ +N  + +A T   L
Sbjct: 752 SKIDENNFSLEASTAESL 769



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 115/508 (22%), Positives = 228/508 (44%), Gaps = 39/508 (7%)

Query: 27  PNVVSYTTLIHGYCRTGEMDVAYKVF-----------------------DEMRHC----- 58
           PN+++Y+ +I    R G +D+A+                          D+ R       
Sbjct: 89  PNLITYSVVIDCCSRVGHLDLAFAALGRVIRSGWTAEAITFSPLLKALCDKKRTSEAMDI 148

Query: 59  --------GVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANL 110
                   G  PN  +Y++L++G+      ++A  L+  +            +  ++  +
Sbjct: 149 ALRRMPVLGCTPNVFSYTILLKGLCDENRSQQALHLLHTMMVADDTRGGYPPDVVSYNTV 208

Query: 111 VDSLCREG-YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRG 169
           ++ L REG  ++  + + + M       +      +I +L ++     A+ V+  M K G
Sbjct: 209 INGLLREGRQLDTAYHLFDQMLDQGLSPDVVTYNSIISALSKARAMDKAAVVLVRMVKNG 268

Query: 170 LTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKAR 229
             P+ +++NS++HG C  G    A  + +   + G  P   TY  L+  LC      +AR
Sbjct: 269 AMPNRITHNSLLHGYCSSGKPNDAIGVFKRMCRDGVEPDVFTYNTLMGYLCKNGRSMEAR 328

Query: 230 KVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGF 289
           K+   M+ +     +      L       +  ++ ++L  M++   QPD    N +I  +
Sbjct: 329 KIFDSMVKRGHKPNSATYGTLLHGYATEGSLVKMHHLLDMMVRNGIQPDHYIFNILIGTY 388

Query: 290 CKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSP 349
            K G++++A+ + + M   +   PD VT+  ++  L  VG++ +A+    +++ + G +P
Sbjct: 389 TKHGKVDDAMLLFSKM-RRQGLNPDTVTYGIVMDALCMVGKVDDAMAQFGRLISE-GLTP 446

Query: 350 GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFW 409
             V +  ++ GL    + ++A+E+   M+G G+  ++  +  +++ LC+   +  AK  +
Sbjct: 447 DAVVFRNLIHGLCARDKWDKAEELAVEMIGRGICPNNIFFNTLLNHLCKEGMVARAKNIF 506

Query: 410 DDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKL 469
           D +V      D   Y  +I G C  GK+ EA   L  +V  GV PN V YN +I+G CK 
Sbjct: 507 DLMVRVDVQRDVITYNTLIDGYCLHGKVDEAAKLLEGMVLDGVKPNEVTYNTMINGYCKN 566

Query: 470 SMKREAYQILREMRKNGLNPDAVTWRIL 497
               +A+ + R+M   G+NP  VT+  +
Sbjct: 567 GRIEDAFSLFRQMASKGVNPGIVTYSTI 594



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 92/347 (26%), Positives = 167/347 (48%), Gaps = 14/347 (4%)

Query: 160 RVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGL 219
           R+V V R + + P+L++Y+ ++    + G    A+  L   I+ G+     T+  L++ L
Sbjct: 78  RMVMVARPK-VPPNLITYSVVIDCCSRVGHLDLAFAALGRVIRSGWTAEAITFSPLLKAL 136

Query: 220 CGESDLEKARKVLQFMLSKKDV----DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQ- 274
           C   D ++  + +   L +  V           I L+ LC      + L++L  M+    
Sbjct: 137 C---DKKRTSEAMDIALRRMPVLGCTPNVFSYTILLKGLCDENRSQQALHLLHTMMVADD 193

Query: 275 ----CQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR 330
                 PDV++ NTVING  + GR  +    L D +  +  +PD VT+ +II  L     
Sbjct: 194 TRGGYPPDVVSYNTVINGLLREGRQLDTAYHLFDQMLDQGLSPDVVTYNSIISALSKARA 253

Query: 331 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYA 390
           + +A  +L + M + G  P  +T+N++L G     +  +A  VF  M   GV  D  TY 
Sbjct: 254 MDKAAVVLVR-MVKNGAMPNRITHNSLLHGYCSSGKPNDAIGVFKRMCRDGVEPDVFTYN 312

Query: 391 IVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 450
            ++  LC++ +  EA++ +D +V   +  ++  Y  ++ G    G + +  H L  +V +
Sbjct: 313 TLMGYLCKNGRSMEARKIFDSMVKRGHKPNSATYGTLLHGYATEGSLVKMHHLLDMMVRN 372

Query: 451 GVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           G+ P+   +N++I    K     +A  +  +MR+ GLNPD VT+ I+
Sbjct: 373 GIQPDHYIFNILIGTYTKHGKVDDAMLLFSKMRRQGLNPDTVTYGIV 419



 Score = 40.8 bits (94), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 5/128 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D L    R  EA  LF  + +RG VPNVV+Y  ++      G ++    +F  +   G 
Sbjct: 665 IDALLKGGRHDEAKDLFASLLARGLVPNVVTYWLMMKSLIEQGLLEELDDLFLSLEKNGC 724

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             NS   + LV  +L+  +V +A V + K+     +E + S+  +   +LV  +    Y 
Sbjct: 725 TANSRMLNALVGKLLQKGEVRKAGVYLSKI-----DENNFSLEASTAESLVLLVSSGKYD 779

Query: 121 NEVFRIAE 128
             +  I E
Sbjct: 780 QHINAIPE 787


>gi|224103961|ref|XP_002313262.1| predicted protein [Populus trichocarpa]
 gi|222849670|gb|EEE87217.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  208 bits (529), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 132/478 (27%), Positives = 240/478 (50%), Gaps = 46/478 (9%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           MK    +P++VSY T+I+G C+   ++ A  +  EM      PNS TY +L+ G+ +   
Sbjct: 1   MKRINILPDIVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGR 60

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDM-PQGKSVNE 138
           VE A     +L   MK +  L V+   ++ L+   C +G ++    + ++M  +G S N 
Sbjct: 61  VEEA----MRLLGEMKRK-GLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNV 115

Query: 139 E-FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLL 197
             ++C  +I+  C+ G    A+ V++ M +RG+ P + +Y  ++ GLCK G   +A  L 
Sbjct: 116 VVYSC--LINGFCKKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLF 173

Query: 198 EEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLI 257
           +   + G  PS  TY VL+ GLC E  +  A K+ + ML K                   
Sbjct: 174 DLMTEKGEEPSTVTYNVLINGLCKEGCIGDAFKIFETMLEKGK----------------- 216

Query: 258 KNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA-GKFCAPDAV 316
                             + +V++ NT+I G C  G+++EA+K+ + ++  G +  PD +
Sbjct: 217 ------------------RLEVVSYNTLIMGLCNNGKLDEAMKLFSSLLEDGNYVEPDVI 258

Query: 317 TFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNC 376
           TF T+I GL   GR+ +A+ + Y  M +RG    + T + ++    +   +++A E++  
Sbjct: 259 TFNTVIQGLCKEGRLDKAVEI-YDTMIERGSFGNLFTCHILIGEYIKSGIIDKAMELWKR 317

Query: 377 MLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGK 436
           +  +G+V  STTY+++IDG C+ + L+ AK  +  +         + Y  ++  LC+   
Sbjct: 318 VHKLGLVPSSTTYSVMIDGFCKMHMLNFAKGLFSRMKISGLSPTLFDYNTLMASLCKESS 377

Query: 437 IHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
           + +A     E+ +S   P+ + +N++IDG  K      A ++L +M++ GL PDA T+
Sbjct: 378 LEQARRLFQEMKESNCEPDTISFNIMIDGTLKAGDIHSAKELLNDMQQMGLTPDAYTY 435



 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 127/474 (26%), Positives = 234/474 (49%), Gaps = 19/474 (4%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           MD LC   RV EA +L  +MK +G   +VV Y+TLI G+C  G +D    +FDEM   G+
Sbjct: 52  MDGLCKEGRVEEAMRLLGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGI 111

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN + YS L+ G  +      A  ++  + ER      +  +   +  ++  LC++G  
Sbjct: 112 SPNVVVYSCLINGFCKKGLWREATAVLHTMTER-----GIQPDVYTYTCMIGGLCKDGRA 166

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +   + + M +            +I+ LC+ G    A ++   M ++G    +VSYN++
Sbjct: 167 RKALDLFDLMTEKGEEPSTVTYNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTL 226

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFG-YL-PSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
           + GLC +G    A +L    ++ G Y+ P   T+  +++GLC E  L+KA ++   M+ +
Sbjct: 227 IMGLCNNGKLDEAMKLFSSLLEDGNYVEPDVITFNTVIQGLCKEGRLDKAVEIYDTMIER 286

Query: 239 KDVDRTRICNI----YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGR 294
                   C+I    Y+++  +I    EL   +    +    P   T + +I+GFCKM  
Sbjct: 287 GSFGNLFTCHILIGEYIKS-GIIDKAMELWKRV---HKLGLVPSSTTYSVMIDGFCKMHM 342

Query: 295 IEEALKVLNDM-VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVT 353
           +  A  + + M ++G   +P    + T++  L     +++A  L +Q M +    P  ++
Sbjct: 343 LNFAKGLFSRMKISG--LSPTLFDYNTLMASLCKESSLEQARRL-FQEMKESNCEPDTIS 399

Query: 354 YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413
           +N ++ G  +   +  AKE+ N M  +G+  D+ TY+  I+ L +  Q++EAK  +D ++
Sbjct: 400 FNIMIDGTLKAGDIHSAKELLNDMQQMGLTPDAYTYSSFINRLSKLGQMEEAKGAFDSMI 459

Query: 414 WPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGAC 467
                 DN+VY ++IKG   + +I E ++ L ++ D GV  ++   N ++   C
Sbjct: 460 ASGITPDNHVYDSLIKGFGLNDEIEEVINLLRQMADMGVILDLEITNSILTFLC 513



 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 127/503 (25%), Positives = 232/503 (46%), Gaps = 42/503 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   R+ +A  L  +M+     PN  +Y  L+ G C+ G ++ A ++  EM+  G+
Sbjct: 17  INGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGRVEEAMRLLGEMKRKGL 76

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             + + YS L+ G      ++R   L  ++ E+      +S N   ++ L++  C++G  
Sbjct: 77  EVDVVVYSTLISGFCSKGCLDRGKALFDEMLEK-----GISPNVVVYSCLINGFCKKGLW 131

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E   +   M +     + +    MI  LC+ GR   A  +  +M ++G  PS V+YN +
Sbjct: 132 REATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEKGEEPSTVTYNVL 191

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++GLCK G    A+++ E  ++ G      +Y  L+ GLC    L++A K+   +L   +
Sbjct: 192 INGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMGLCNNGKLDEAMKLFSSLLEDGN 251

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                              +PDVIT NTVI G CK GR+++A++
Sbjct: 252 Y---------------------------------VEPDVITFNTVIQGLCKEGRLDKAVE 278

Query: 301 VLNDMVA-GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           + + M+  G F   +  T   +I   +  G I +A+  L++ + + G  P   TY+ ++ 
Sbjct: 279 IYDTMIERGSF--GNLFTCHILIGEYIKSGIIDKAME-LWKRVHKLGLVPSSTTYSVMID 335

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
           G  ++  +  AK +F+ M   G+      Y  ++  LC+ + L++A+R + ++   +   
Sbjct: 336 GFCKMHMLNFAKGLFSRMKISGLSPTLFDYNTLMASLCKESSLEQARRLFQEMKESNCEP 395

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           D   +  MI G  ++G IH A   L ++   G+TP+   Y+  I+   KL    EA    
Sbjct: 396 DTISFNIMIDGTLKAGDIHSAKELLNDMQQMGLTPDAYTYSSFINRLSKLGQMEEAKGAF 455

Query: 480 REMRKNGLNPDAVTWRILDKLHG 502
             M  +G+ PD   +  L K  G
Sbjct: 456 DSMIASGITPDNHVYDSLIKGFG 478



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 93/185 (50%), Gaps = 1/185 (0%)

Query: 313 PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKE 372
           PD V++ TII GL    R+++A++LL + M      P   TY  ++ GL +  RVEEA  
Sbjct: 8   PDIVSYNTIINGLCKEKRLEKAVDLLVE-MEGSSCEPNSFTYCILMDGLCKEGRVEEAMR 66

Query: 373 VFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLC 432
           +   M   G+  D   Y+ +I G C    LD  K  +D+++      +  VY+ +I G C
Sbjct: 67  LLGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSCLINGFC 126

Query: 433 RSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAV 492
           + G   EA   L+ + + G+ P++  Y  +I G CK    R+A  +   M + G  P  V
Sbjct: 127 KKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEKGEEPSTV 186

Query: 493 TWRIL 497
           T+ +L
Sbjct: 187 TYNVL 191


>gi|302760809|ref|XP_002963827.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
 gi|300169095|gb|EFJ35698.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
          Length = 616

 Score =  208 bits (529), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 137/481 (28%), Positives = 239/481 (49%), Gaps = 14/481 (2%)

Query: 17  FFDM--KSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGV 74
           FFD   +  G+  +V SY  L+    ++G      KV+ ++ H G  PN +T+ +L+RG 
Sbjct: 13  FFDWAGEQDGYKHDVHSYNHLLDILVKSGHHFRTGKVYKDLLHSGCSPNLVTFKILIRGN 72

Query: 75  LRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGK 134
            +     RA   +     R  +E  ++ +   F  L+  L ++G  ++  ++ E+M   +
Sbjct: 73  CKAGQAMRALEFL-----RALDEFSVAPDVYIFNVLIHGLFKDGNPDQAVKLFENMESSR 127

Query: 135 SVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRG--LTPSLVSYNSIVHGLCKHGGCMR 192
              E      +I  LC+SG    A  ++  M ++G    P +V+YN++++   +      
Sbjct: 128 VKPEIVTYNTVISGLCKSGNLEKARELLEEMIRKGGKSAPDIVTYNTLINAFYRASRIRE 187

Query: 193 AYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLR 252
           A    E+    G  P   T  +LV G+C + D+E+A ++L  M     V      N  + 
Sbjct: 188 ACAFREKMKAAGINPDVLTCNILVSGICKDGDVEEALEILDGMKLAGPVPDVITYNSIIH 247

Query: 253 ALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCA 312
           ALC+     E   +L  M    C PD++T NT+++GFCK G +  AL+VL +M       
Sbjct: 248 ALCVAGKVVEAAEILKTM---SCSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENIL- 303

Query: 313 PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKE 372
           PD +T+T ++ GL  VG++Q A  LL +++ Q GY P ++ Y +++ GL +   +EEA +
Sbjct: 304 PDVITYTILVNGLCRVGQVQVAFYLLEEIVRQ-GYIPDVIAYTSLVDGLCKSGEIEEAHK 362

Query: 373 VFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLC 432
           +   M   G       Y+ ++ G C +  + +A+    ++V  + +   + Y  ++ GL 
Sbjct: 363 LVKEMSVRGCRTGVVMYSSLVSGYCRAGNVHKAREILAEMVSINMVPPLFTYNIVLGGLI 422

Query: 433 RSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAV 492
           + G I +AV  + +LV  G  P++V YN +IDG CK +  REA  +  EM   G  P+ V
Sbjct: 423 KDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADEMASRGCFPNDV 482

Query: 493 T 493
           T
Sbjct: 483 T 483



 Score =  201 bits (512), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 129/480 (26%), Positives = 233/480 (48%), Gaps = 10/480 (2%)

Query: 27  PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVL 86
           P+V  +  LIHG  + G  D A K+F+ M    V P  +TY+ ++ G+ ++ ++E+A  L
Sbjct: 95  PDVYIFNVLIHGLFKDGNPDQAVKLFENMESSRVKPEIVTYNTVISGLCKSGNLEKAREL 154

Query: 87  MFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMI 146
              L E +++    + +   +  L+++  R   + E     E M       +   C  ++
Sbjct: 155 ---LEEMIRKGGKSAPDIVTYNTLINAFYRASRIREACAFREKMKAAGINPDVLTCNILV 211

Query: 147 DSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL 206
             +C+ G    A  ++  M+  G  P +++YNSI+H LC  G  + A ++L+        
Sbjct: 212 SGICKDGDVEEALEILDGMKLAGPVPDVITYNSIIHALCVAGKVVEAAEILK---TMSCS 268

Query: 207 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 266
           P   T+  L++G C    L +A +VL+ M  +  +       I +  LC +        +
Sbjct: 269 PDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYL 328

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
           L  +++    PDVI   ++++G CK G IEEA K++ +M   + C    V +++++ G  
Sbjct: 329 LEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSV-RGCRTGVVMYSSLVSGYC 387

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
             G + +A  +L + M      P + TYN VL GL +   + +A  + + ++  G V D 
Sbjct: 388 RAGNVHKAREILAE-MVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDV 446

Query: 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE 446
            TY  +IDGLC++N++ EA    D++       ++    +++ GLCR G++ +A   + E
Sbjct: 447 VTYNTLIDGLCKANRVREACDLADEMASRGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVE 506

Query: 447 LVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWR--ILDKLHGNR 504
           +      PN+V Y  +IDG CK     +A  +L  MR  G+  D   +R  I+   HG R
Sbjct: 507 MSRKRHAPNVVVYTSLIDGLCKSDRMDDACMVLDAMRGQGVALDDFAYRKLIVSMSHGGR 566



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 116/407 (28%), Positives = 216/407 (53%), Gaps = 12/407 (2%)

Query: 8   SRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTY 67
           SR+ EA      MK+ G  P+V++   L+ G C+ G+++ A ++ D M+  G +P+ +TY
Sbjct: 183 SRIREACAFREKMKAAGINPDVLTCNILVSGICKDGDVEEALEILDGMKLAGPVPDVITY 242

Query: 68  SVLVRGV-LRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRI 126
           + ++  + +  + VE A +L     + M    DL      F  L+D  C+ G +     +
Sbjct: 243 NSIIHALCVAGKVVEAAEIL-----KTMSCSPDL----VTFNTLLDGFCKAGMLPRALEV 293

Query: 127 AEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK 186
            E+M +   + +      +++ LCR G+   A  ++  + ++G  P +++Y S+V GLCK
Sbjct: 294 LEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCK 353

Query: 187 HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRI 246
            G    A++L++E    G       Y  LV G C   ++ KAR++L  M+S   V     
Sbjct: 354 SGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYCRAGNVHKAREILAEMVSINMVPPLFT 413

Query: 247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV 306
            NI L  L    + ++ ++++  ++     PDV+T NT+I+G CK  R+ EA  + ++M 
Sbjct: 414 YNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADEM- 472

Query: 307 AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 366
           A + C P+ VT  +++FGL  VGR+ +A +L+ + M ++ ++P +V Y +++ GL +  R
Sbjct: 473 ASRGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVE-MSRKRHAPNVVVYTSLIDGLCKSDR 531

Query: 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413
           +++A  V + M G GV  D   Y  +I  +    ++ EA   +D++V
Sbjct: 532 MDDACMVLDAMRGQGVALDDFAYRKLIVSMSHGGRVAEAMAMYDEMV 578



 Score =  168 bits (425), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 103/365 (28%), Positives = 179/365 (49%), Gaps = 7/365 (1%)

Query: 144 HMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQF 203
           H++D L +SG +    +V   +   G +P+LV++  ++ G CK G  MRA + L    +F
Sbjct: 32  HLLDILVKSGHHFRTGKVYKDLLHSGCSPNLVTFKILIRGNCKAGQAMRALEFLRALDEF 91

Query: 204 GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTEL 263
              P  + + VL+ GL  + + ++A K+ + M S +        N  +  LC   N  + 
Sbjct: 92  SVAPDVYIFNVLIHGLFKDGNPDQAVKLFENMESSRVKPEIVTYNTVISGLCKSGNLEKA 151

Query: 264 LNVLVFMLQT--QCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTI 321
             +L  M++   +  PD++T NT+IN F +  RI EA      M A     PD +T   +
Sbjct: 152 RELLEEMIRKGGKSAPDIVTYNTLINAFYRASRIREACAFREKMKAAGI-NPDVLTCNIL 210

Query: 322 IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG 381
           + G+   G ++EAL +L   M   G  P ++TYN+++  L    +V EA E+   M    
Sbjct: 211 VSGICKDGDVEEALEIL-DGMKLAGPVPDVITYNSIIHALCVAGKVVEAAEILKTM---S 266

Query: 382 VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAV 441
              D  T+  ++DG C++  L  A    +++   + + D   Y  ++ GLCR G++  A 
Sbjct: 267 CSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAF 326

Query: 442 HFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLH 501
           + L E+V  G  P+++ Y  ++DG CK     EA+++++EM   G     V +  L   +
Sbjct: 327 YLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSGY 386

Query: 502 GNRGN 506
              GN
Sbjct: 387 CRAGN 391



 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 113/415 (27%), Positives = 198/415 (47%), Gaps = 9/415 (2%)

Query: 86  LMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHM 145
           L  + ++   E++    +  ++ +L+D L + G+     ++ +D+              +
Sbjct: 9   LAIQFFDWAGEQDGYKHDVHSYNHLLDILVKSGHHFRTGKVYKDLLHSGCSPNLVTFKIL 68

Query: 146 IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY 205
           I   C++G+   A   +  + +  + P +  +N ++HGL K G   +A +L E       
Sbjct: 69  IRGNCKAGQAMRALEFLRALDEFSVAPDVYIFNVLIHGLFKDGNPDQAVKLFENMESSRV 128

Query: 206 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK--KDVDRTRICNIYLRALCLIKNPTEL 263
            P   TY  ++ GLC   +LEKAR++L+ M+ K  K        N  + A        E 
Sbjct: 129 KPEIVTYNTVISGLCKSGNLEKARELLEEMIRKGGKSAPDIVTYNTLINAFYRASRIREA 188

Query: 264 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM-VAGKFCAPDAVTFTTII 322
                 M      PDV+T N +++G CK G +EEAL++L+ M +AG    PD +T+ +II
Sbjct: 189 CAFREKMKAAGINPDVLTCNILVSGICKDGDVEEALEILDGMKLAGP--VPDVITYNSII 246

Query: 323 FGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGV 382
             L   G++ EA     +++     SP +VT+N +L G  +   +  A EV   M    +
Sbjct: 247 HALCVAGKVVEAA----EILKTMSCSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENI 302

Query: 383 VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVH 442
           + D  TY I+++GLC   Q+  A    ++IV    I D   Y +++ GLC+SG+I EA  
Sbjct: 303 LPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHK 362

Query: 443 FLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            + E+   G    +V Y+ ++ G C+     +A +IL EM    + P   T+ I+
Sbjct: 363 LVKEMSVRGCRTGVVMYSSLVSGYCRAGNVHKAREILAEMVSINMVPPLFTYNIV 417



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 111/418 (26%), Positives = 204/418 (48%), Gaps = 21/418 (5%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           +C    V EA ++   MK  G VP+V++Y ++IH  C  G++  A ++   M  C   P+
Sbjct: 214 ICKDGDVEEALEILDGMKLAGPVPDVITYNSIIHALCVAGKVVEAAEILKTM-SCS--PD 270

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +T++ L+ G  +   + RA     ++ E M  E  L  +   +  LV+ LCR G V   
Sbjct: 271 LVTFNTLLDGFCKAGMLPRA----LEVLEEMCRENILP-DVITYTILVNGLCRVGQVQVA 325

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           F + E++ +   + +  A   ++D LC+SG    A ++V  M  RG    +V Y+S+V G
Sbjct: 326 FYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSG 385

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            C+ G   +A ++L E +    +P   TY +++ GL  +  + KA  ++  ++++  V  
Sbjct: 386 YCRAGNVHKAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPD 445

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               N  +  LC      E  ++   M    C P+ +TL +V+ G C++GR+++A  ++ 
Sbjct: 446 VVTYNTLIDGLCKANRVREACDLADEMASRGCFPNDVTLGSVVFGLCRVGRVDDAWSLVV 505

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           +M + K  AP+ V +T++I GL    R+ +A  +L   M  +G +     Y  ++  +  
Sbjct: 506 EM-SRKRHAPNVVVYTSLIDGLCKSDRMDDACMVL-DAMRGQGVALDDFAYRKLIVSMSH 563

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
             RV EA  +++ M+  G + D +T          S  L+EA        W +N+ +N
Sbjct: 564 GGRVAEAMAMYDEMVARGFLPDGST----------SKTLEEAAMSNSVFEW-TNLEEN 610



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 87/349 (24%), Positives = 165/349 (47%), Gaps = 42/349 (12%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C    +  A ++  +M     +P+V++YT L++G CR G++ VA+ + +E+   G 
Sbjct: 278 LDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGY 337

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P+ + Y+ LV G+ ++ ++E A+ L+          +++SV            CR G V
Sbjct: 338 IPDVIAYTSLVDGLCKSGEIEEAHKLV----------KEMSVRG----------CRTGVV 377

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                                   ++   CR+G  H A  ++  M    + P L +YN +
Sbjct: 378 --------------------MYSSLVSGYCRAGNVHKAREILAEMVSINMVPPLFTYNIV 417

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GL K G   +A  L+ + +  GY+P   TY  L++GLC  + + +A  +   M S+  
Sbjct: 418 LGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADEMASRGC 477

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                     +  LC +    +  +++V M + +  P+V+   ++I+G CK  R+++A  
Sbjct: 478 FPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDGLCKSDRMDDACM 537

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSP 349
           VL D + G+  A D   +  +I  + + GR+ EA+  +Y  M  RG+ P
Sbjct: 538 VL-DAMRGQGVALDDFAYRKLIVSMSHGGRVAEAM-AMYDEMVARGFLP 584


>gi|147819144|emb|CAN78081.1| hypothetical protein VITISV_021300 [Vitis vinifera]
          Length = 778

 Score =  208 bits (529), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 139/521 (26%), Positives = 243/521 (46%), Gaps = 38/521 (7%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   R+G+A  L  DMKSRG +PN  +Y  L++GYC+ G +  A  V + M    +
Sbjct: 250 LDALCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNL 309

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           LP+  TY++L+ G+     +E A    FKL + M E   L  +  ++  L++       +
Sbjct: 310 LPDVWTYNMLINGLCNEGRIEEA----FKLRDEM-ENLKLLPDVVSYNTLINGCLEWSKI 364

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E F++ E+M +            M+   C+ G+   AS  +  M + G +P  V+YN++
Sbjct: 365 SEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTL 424

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK-- 238
           ++G CK G    A++ ++E  +        T   ++  LC E  LE+A K+L     +  
Sbjct: 425 INGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGY 484

Query: 239 --KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIE 296
              +V    +   Y +      N    L +   M + +  P  +T N +I G C+ G+ E
Sbjct: 485 FIDEVSYGTLIVGYFKD----GNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTE 540

Query: 297 EALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
           +A+  LN+++      PD  T+ TI+ G    G +++A    +  M +  + P + T N 
Sbjct: 541 QAISKLNELLESGLL-PDETTYNTILHGYCREGDVEKAFQ-FHNKMVENSFKPDVFTCNI 598

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416
           +LRGL     +E+A ++FN  +  G   D+ TY  +I  LC+  +LD+A     ++    
Sbjct: 599 LLRGLCMEGMLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKE 658

Query: 417 NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTP---------------------- 454
              D+Y Y A+I  L  SG+I EA  F+ ++++ G  P                      
Sbjct: 659 LGPDHYTYNAIITALTDSGRIREAEEFMSKMLEKGXLPXQVLQLDXNETVVTSETSEESD 718

Query: 455 -NIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
            + V Y+  I   C     ++A +I  E ++ G+  D  T+
Sbjct: 719 SSSVAYSEWIKELCTEGKYKDAMRIFGESKQKGITVDKSTY 759



 Score =  191 bits (485), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 127/471 (26%), Positives = 222/471 (47%), Gaps = 4/471 (0%)

Query: 27  PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVL 86
           P+     T I  Y ++G+   A+++F +M+   + PN LT + L+  ++R       +  
Sbjct: 133 PSKALLDTAIGAYVQSGQPHHAFQIFKKMKRLRLRPNLLTCNTLLNSLVRYPSSHSVSFS 192

Query: 87  MFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMI 146
                + +K     +VN   F  ++   C E    +       M +     +      ++
Sbjct: 193 REAFNDAIKLGIVPNVN--TFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTIL 250

Query: 147 DSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL 206
           D+LC+ GR   A  ++  M+ RGL P+  +YN +V+G CK G    A  ++E   Q   L
Sbjct: 251 DALCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLL 310

Query: 207 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 266
           P   TY +L+ GLC E  +E+A K+   M + K +      N  +         +E   +
Sbjct: 311 PDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKL 370

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
           L  M +   +P+ +T N ++  +CK G++++A   +  M    F +PD VT+ T+I G  
Sbjct: 371 LEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGF-SPDCVTYNTLINGYC 429

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
             G + EA   + + M ++      VT N +LR L R +++EEA ++ +     G   D 
Sbjct: 430 KAGNMGEAFRTMDE-MGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDE 488

Query: 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE 446
            +Y  +I G  +   +D A + WD++     I     Y  +I GLC+ GK  +A+  L E
Sbjct: 489 VSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNE 548

Query: 447 LVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           L++SG+ P+   YN ++ G C+     +A+Q   +M +N   PD  T  IL
Sbjct: 549 LLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNIL 599



 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 129/486 (26%), Positives = 227/486 (46%), Gaps = 9/486 (1%)

Query: 10  VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSV 69
           V  + + F D    G VPNV ++  +I+GYC   +   A +  + M      P+++TY+ 
Sbjct: 189 VSFSREAFNDAIKLGIVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNT 248

Query: 70  LVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAED 129
           ++  + +   +  A  L+  +  R      L  N   +  LV   C+ G++ E   + E 
Sbjct: 249 ILDALCKKGRLGDARDLLMDMKSR-----GLLPNRNTYNILVYGYCKMGWLKEAANVIEL 303

Query: 130 MPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG 189
           M Q   + + +    +I+ LC  GR   A ++   M    L P +VSYN++++G  +   
Sbjct: 304 MTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSK 363

Query: 190 CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNI 249
              A++LLEE  + G  P+  T+ ++V+  C E  ++ A   +  M            N 
Sbjct: 364 ISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNT 423

Query: 250 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA-G 308
            +   C   N  E    +  M +   + D +TLNT++   C+  ++EEA K+L+     G
Sbjct: 424 LINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRG 483

Query: 309 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE 368
            F   D V++ T+I G    G +  AL L +  M ++   P  VTYN ++ GL +  + E
Sbjct: 484 YFI--DEVSYGTLIVGYFKDGNVDRALKL-WDEMKEKEIIPSTVTYNCIIGGLCQCGKTE 540

Query: 369 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI 428
           +A    N +L  G++ D TTY  ++ G C    +++A +F + +V  S   D +    ++
Sbjct: 541 QAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILL 600

Query: 429 KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLN 488
           +GLC  G + +A+      V  G   + V YN +I   CK     +A+ +L EM +  L 
Sbjct: 601 RGLCMEGMLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELG 660

Query: 489 PDAVTW 494
           PD  T+
Sbjct: 661 PDHYTY 666



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/231 (33%), Positives = 124/231 (53%), Gaps = 4/231 (1%)

Query: 277 PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKF-CAPDAVTFTTIIFGLLNVGRIQEAL 335
           P+V T N VI G+C   + ++A++ LN  V GK+ C+PD VT+ TI+  L   GR+ +A 
Sbjct: 206 PNVNTFNIVIYGYCLENKFKDAVEFLN--VMGKYNCSPDNVTYNTILDALCKKGRLGDAR 263

Query: 336 NLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG 395
           +LL   M  RG  P   TYN ++ G  ++  ++EA  V   M    ++ D  TY ++I+G
Sbjct: 264 DLLMD-MKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLING 322

Query: 396 LCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN 455
           LC   +++EA +  D++     + D   Y  +I G     KI EA   L E+ + GV PN
Sbjct: 323 LCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPN 382

Query: 456 IVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
            V +N+++   CK     +A   + +M ++G +PD VT+  L   +   GN
Sbjct: 383 AVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGN 433



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 127/249 (51%), Gaps = 5/249 (2%)

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGR---IEEALKVLNDMVAGKFCAPDAV 316
           P     +   M + + +P+++T NT++N   +      +  + +  ND +      P+  
Sbjct: 151 PHHAFQIFKKMKRLRLRPNLLTCNTLLNSLVRYPSSHSVSFSREAFNDAIKLGI-VPNVN 209

Query: 317 TFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNC 376
           TF  +I+G     + ++A+  L  VM +   SP  VTYN +L  L +  R+ +A+++   
Sbjct: 210 TFNIVIYGYCLENKFKDAVEFL-NVMGKYNCSPDNVTYNTILDALCKKGRLGDARDLLMD 268

Query: 377 MLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGK 436
           M   G++ +  TY I++ G C+   L EA    + +   + + D + Y  +I GLC  G+
Sbjct: 269 MKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGR 328

Query: 437 IHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRI 496
           I EA     E+ +  + P++V YN +I+G  + S   EA+++L EM + G+ P+AVT  I
Sbjct: 329 IEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNI 388

Query: 497 LDKLHGNRG 505
           + K +   G
Sbjct: 389 MVKWYCKEG 397


>gi|224059754|ref|XP_002299984.1| predicted protein [Populus trichocarpa]
 gi|222847242|gb|EEE84789.1| predicted protein [Populus trichocarpa]
          Length = 610

 Score =  208 bits (529), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 130/494 (26%), Positives = 241/494 (48%), Gaps = 11/494 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   +  +      +M+  G   ++V+Y TLI  YCR G ++ A+++ + M   G+
Sbjct: 125 VNALCKDGKFDDVKSFLSEMEGNGIYADMVTYNTLIGAYCREGLLEEAFEIMNSMADKGL 184

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+  TY+ ++ G+ +     RA  ++ ++         LS +   +  L+   CR    
Sbjct: 185 KPSLFTYNAIINGLCKKGRYARAKGILIEMLNI-----GLSPDTTTYNTLLVESCRRDNF 239

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYV--MRKRGLTPSLVSYN 178
           +E   I  +M +   V +  +   +I    R+   H    +VY   M+K GL P  V Y 
Sbjct: 240 SEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRN--RHLDQALVYFRDMKKFGLVPDNVIYT 297

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
            ++HG C++G  + A ++ +E ++ G +     Y  ++ GLC E  L  A K+   M+ +
Sbjct: 298 VLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVER 357

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
             +         +   C   N T+ L++   M Q   +PD++  NT+I+GFCK+G +E+A
Sbjct: 358 GALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKA 417

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
            ++ + M++ K   P+ +T+  +I    +VG + EA   L+ VM ++G  P +VT N V+
Sbjct: 418 SELWDGMISRKI-FPNHITYGILINAYCSVGHVSEAFR-LWDVMIEKGIKPTLVTCNTVI 475

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
           +G  R     +A E    M+  GV  D  +Y  +I+G    + +D+A  + + +     +
Sbjct: 476 KGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLINGFVREDNMDKAFLWINKMEKEGLL 535

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI 478
            D   Y  ++ G CR G++ EA   L ++++ G+ P+   Y  +I+G        EA++ 
Sbjct: 536 PDIITYNVVMNGFCRQGRMQEAELVLRKMIEKGINPDRSTYTALINGHVTQDNLNEAFRF 595

Query: 479 LREMRKNGLNPDAV 492
             EM + G  PD V
Sbjct: 596 HDEMLQRGFAPDDV 609



 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 138/537 (25%), Positives = 247/537 (45%), Gaps = 50/537 (9%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           ++ E  + F  ++S+G++ ++ +  +L+ G  +   +++A++V  E+   G+  N  T +
Sbjct: 63  KLREGTEAFRILRSKGYLVSINACNSLLGGLVKIDWVELAWEVHREVVRSGIELNVYTLN 122

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
           ++V  + +    +     + ++     E   +  +   +  L+ + CREG + E F I  
Sbjct: 123 IMVNALCKDGKFDDVKSFLSEM-----EGNGIYADMVTYNTLIGAYCREGLLEEAFEIMN 177

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
            M         F    +I+ LC+ GR   A  ++  M   GL+P   +YN+++   C+  
Sbjct: 178 SMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVESCRRD 237

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
               A ++  E ++ G +P   ++  L+        L++A    + M     V    I  
Sbjct: 238 NFSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYT 297

Query: 249 IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 308
           + +   C   N  E L +   ML+  C  DVI  NT++NG CK   + +A K+ ++MV  
Sbjct: 298 VLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVE- 356

Query: 309 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE 368
           +   PD  TFTT+I G    G + +AL+L +  M QR   P IV YN ++ G  ++  +E
Sbjct: 357 RGALPDFYTFTTLIHGHCQDGNMTKALSL-FGTMTQRNIKPDIVAYNTLIDGFCKVGEME 415

Query: 369 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVW----PSNIHDNYVY 424
           +A E+++ M+   +  +  TY I+I+  C    + EA R WD ++     P+ +  N V 
Sbjct: 416 KASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTV- 474

Query: 425 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPN----------------------------- 455
              IKG CRSG   +A  FL  ++  GV P+                             
Sbjct: 475 ---IKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLINGFVREDNMDKAFLWINKMEK 531

Query: 456 ------IVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
                 I+ YNVV++G C+    +EA  +LR+M + G+NPD  T+  L   H  + N
Sbjct: 532 EGLLPDIITYNVVMNGFCRQGRMQEAELVLRKMIEKGINPDRSTYTALINGHVTQDN 588



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 128/563 (22%), Positives = 235/563 (41%), Gaps = 102/563 (18%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           R+ +A  L   M  R  V  V     L+   C                +CG   N+L + 
Sbjct: 10  RLSDAQALILRMIRRSGVSRVEVVEALVSSMCG---------------NCGT--NNLVFD 52

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
           +L+R  ++ R +            R+   +   V+  A  +L+  L +  +V   + +  
Sbjct: 53  LLIRTYVQARKLREGTEAF-----RILRSKGYLVSINACNSLLGGLVKIDWVELAWEVHR 107

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
           ++ +       +    M+++LC+ G+       +  M   G+   +V+YN+++   C+ G
Sbjct: 108 EVVRSGIELNVYTLNIMVNALCKDGKFDDVKSFLSEMEGNGIYADMVTYNTLIGAYCREG 167

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
               A++++      G  PS  TY  ++ GLC +    +A+ +L  ML+      T   N
Sbjct: 168 LLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYN 227

Query: 249 IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVI---------------------- 286
             L   C   N +E   +   ML+    PD+++ +++I                      
Sbjct: 228 TLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKF 287

Query: 287 -------------NGFCKMGRIEEALKVLNDMVAGKFCAPDAV----------------- 316
                        +G+C+ G + EALK+ ++M+  + C  D +                 
Sbjct: 288 GLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLE-QGCVLDVIAYNTILNGLCKEKMLTD 346

Query: 317 ------------------TFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
                             TFTT+I G    G + +AL+ L+  M QR   P IV YN ++
Sbjct: 347 ADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALS-LFGTMTQRNIKPDIVAYNTLI 405

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVW---- 414
            G  ++  +E+A E+++ M+   +  +  TY I+I+  C    + EA R WD ++     
Sbjct: 406 DGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIK 465

Query: 415 PSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKRE 474
           P+ +  N V    IKG CRSG   +A  FL  ++  GV P+ + YN +I+G  +     +
Sbjct: 466 PTLVTCNTV----IKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLINGFVREDNMDK 521

Query: 475 AYQILREMRKNGLNPDAVTWRIL 497
           A+  + +M K GL PD +T+ ++
Sbjct: 522 AFLWINKMEKEGLLPDIITYNVV 544



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 109/380 (28%), Positives = 176/380 (46%), Gaps = 20/380 (5%)

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGC--------MRAY-- 194
           M+    RS R   A  ++  M +R     +    ++V  +C + G         +R Y  
Sbjct: 1   MVHVFVRSRRLSDAQALILRMIRRSGVSRVEVVEALVSSMCGNCGTNNLVFDLLIRTYVQ 60

Query: 195 -QLLEEGIQF-------GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRI 246
            + L EG +        GYL S +    L+ GL     +E A +V + ++          
Sbjct: 61  ARKLREGTEAFRILRSKGYLVSINACNSLLGGLVKIDWVELAWEVHREVVRSGIELNVYT 120

Query: 247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV 306
            NI + ALC      ++ + L  M       D++T NT+I  +C+ G +EEA +++N M 
Sbjct: 121 LNIMVNALCKDGKFDDVKSFLSEMEGNGIYADMVTYNTLIGAYCREGLLEEAFEIMNSM- 179

Query: 307 AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 366
           A K   P   T+  II GL   GR   A  +L + M   G SP   TYN +L    R   
Sbjct: 180 ADKGLKPSLFTYNAIINGLCKKGRYARAKGILIE-MLNIGLSPDTTTYNTLLVESCRRDN 238

Query: 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAA 426
             EAKE+F  ML  GVV D  +++ +I     +  LD+A  ++ D+     + DN +Y  
Sbjct: 239 FSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTV 298

Query: 427 MIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG 486
           ++ G CR+G + EA+    E+++ G   +++ YN +++G CK  M  +A ++  EM + G
Sbjct: 299 LMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERG 358

Query: 487 LNPDAVTWRILDKLHGNRGN 506
             PD  T+  L   H   GN
Sbjct: 359 ALPDFYTFTTLIHGHCQDGN 378


>gi|147858101|emb|CAN78867.1| hypothetical protein VITISV_041982 [Vitis vinifera]
          Length = 962

 Score =  208 bits (529), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 145/491 (29%), Positives = 241/491 (49%), Gaps = 7/491 (1%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           +V EA  +   +      P+V +YT+LI G+CR   +D+A+ VFD M   G  PNS+TYS
Sbjct: 255 KVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYS 314

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
            L+ G+     V+ A      + E M E+  +      +   + +LC   +  E   +  
Sbjct: 315 TLINGLCNEGRVDEA----LDMLEEMIEK-GIEPTVYTYTLPITALCAIEHEEEAIELVA 369

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
            M +            +I  L R G+   A  + + M K GL P+ V+YN++++ LC  G
Sbjct: 370 RMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGG 429

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
               A ++       G L +  TY  +++GLC   D+EKA  + + ML    +      N
Sbjct: 430 RFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYN 489

Query: 249 IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 308
             +       N      +L  M +  C+PD  T N +++GF K G++E A     +MV  
Sbjct: 490 TLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVEC 549

Query: 309 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE 368
               P+ V++TT+I G    G++  AL+LL + M + G +P + +YNAV+ GL +  R  
Sbjct: 550 GL-NPNPVSYTTLIDGHSKDGKVDIALSLL-ERMEEMGCNPNVESYNAVINGLSKENRFS 607

Query: 369 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI 428
           EA+++ + M   G++ +  TY  +IDGLC + +   A + + D+     + + Y Y+++I
Sbjct: 608 EAEKICDKMAEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLI 667

Query: 429 KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLN 488
            GLC+ GK  EA   L E+   G+ P+ V +  +IDG   L     A+ +LR M   G  
Sbjct: 668 YGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDVGCK 727

Query: 489 PDAVTWRILDK 499
           P+  T+ +L K
Sbjct: 728 PNYRTYSVLLK 738



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 133/495 (26%), Positives = 245/495 (49%), Gaps = 7/495 (1%)

Query: 3   QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           QL     V  A  L+  M + G  P+++++ TLI+   + G++  A  +  ++    + P
Sbjct: 214 QLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSP 273

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           +  TY+ L+ G  R R+++    L F +++RM  +E    N+  ++ L++ LC EG V+E
Sbjct: 274 DVFTYTSLILGHCRNRNLD----LAFGVFDRMV-KEGCDPNSVTYSTLINGLCNEGRVDE 328

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
              + E+M +       +     I +LC       A  +V  M+KRG  P++ +Y +++ 
Sbjct: 329 ALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALIS 388

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           GL + G    A  L  + ++ G +P+  TY  L+  LC       A K+  +M     + 
Sbjct: 389 GLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLA 448

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
            T+  N  ++ LCL  +  + + +   ML+    P V+T NT+ING+   G +  A ++L
Sbjct: 449 NTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLL 508

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
            D++    C PD  T+  ++ G    G+++ A +  +Q M + G +P  V+Y  ++ G  
Sbjct: 509 -DLMKENGCEPDEWTYNELVSGFSKWGKLESA-SFYFQEMVECGLNPNPVSYTTLIDGHS 566

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
           +  +V+ A  +   M  +G   +  +Y  VI+GL + N+  EA++  D +     + +  
Sbjct: 567 KDGKVDIALSLLERMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMAEQGLLPNVI 626

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
            Y  +I GLCR+G+   A    +++      PN+  Y+ +I G C+     EA  +L+EM
Sbjct: 627 TYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEM 686

Query: 483 RKNGLNPDAVTWRIL 497
            + GL PD VT+  L
Sbjct: 687 ERKGLAPDEVTFTSL 701



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 125/488 (25%), Positives = 233/488 (47%), Gaps = 20/488 (4%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC +    EA +L   MK RG  PNV +YT LI G  R G+++VA  ++ +M   G++PN
Sbjct: 355 LCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPN 414

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           ++TY+ L+  +        A     K++  M+    L+ N   +  ++  LC  G + + 
Sbjct: 415 TVTYNALINELCVGGRFSTA----LKIFHWMEGHGSLA-NTQTYNEIIKGLCLGGDIEKA 469

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             + E M +   +        +I+     G  + A+R++ +M++ G  P   +YN +V G
Sbjct: 470 MVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSG 529

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
             K G    A    +E ++ G  P+  +Y  L++G   +  ++ A  +L+ M        
Sbjct: 530 FSKWGKLESASFYFQEMVECGLNPNPVSYTTLIDGHSKDGKVDIALSLLERMEEMGCNPN 589

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               N  +  L      +E   +   M +    P+VIT  T+I+G C+ GR + A K+ +
Sbjct: 590 VESYNAVINGLSKENRFSEAEKICDKMAEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFH 649

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           DM   K C P+  T++++I+GL   G+  EA  +L + M ++G +P  VT+ +++ G   
Sbjct: 650 DMEKRK-CLPNLYTYSSLIYGLCQEGKADEA-EILLKEMERKGLAPDEVTFTSLIDGFVV 707

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLC-ESNQLDEAKRFWDDIVWPSNIHDNY 422
           L R++ A  +   M+ +G   +  TY++++ GL  E   L+E      + V+  + H+  
Sbjct: 708 LGRIDHAFLLLRRMVDVGCKPNYRTYSVLLKGLQKECLLLEEKVAVQHEAVYSFSPHEKD 767

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
           V   ++  L            L  + + G  P +  Y+ ++ G C+     EA Q++++M
Sbjct: 768 VNFEIVSNL------------LARMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDM 815

Query: 483 RKNGLNPD 490
           ++ G  PD
Sbjct: 816 KERGFCPD 823



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 122/445 (27%), Positives = 212/445 (47%), Gaps = 35/445 (7%)

Query: 6   GLSRVG--EAHKLFF-DMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           G S+ G  E+   +F +M   G  PN VSYTTLI G+ + G++D+A  + + M   G  P
Sbjct: 529 GFSKWGKLESASFYFQEMVECGLNPNPVSYTTLIDGHSKDGKVDIALSLLERMEEMGCNP 588

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           N  +Y+ ++ G+ +      A     K+ ++M E+  L  N   +  L+D LCR G    
Sbjct: 589 NVESYNAVINGLSKENRFSEAE----KICDKMAEQ-GLLPNVITYTTLIDGLCRNGRTQF 643

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
            F+I  DM + K +   +    +I  LC+ G+   A  ++  M ++GL P  V++ S++ 
Sbjct: 644 AFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLID 703

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQ------FML 236
           G    G    A+ LL   +  G  P+  TY VL++GL  E  L + +  +Q      F  
Sbjct: 704 GFVVLGRIDHAFLLLRRMVDVGCKPNYRTYSVLLKGLQKECLLLEEKVAVQHEAVYSFSP 763

Query: 237 SKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIE 296
            +KDV+   + N+  R                 M +  C+P + T +T+++G C+ GR  
Sbjct: 764 HEKDVNFEIVSNLLAR-----------------MSEIGCEPTLDTYSTLVSGLCRKGRFY 806

Query: 297 EALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
           EA +++ DM    FC PD   + +++        +  AL + + +   +G+   +  Y A
Sbjct: 807 EAEQLVKDMKERGFC-PDREIYYSLLIAHCKNLEVDHALKIFHSI-EAKGFQLHLSIYRA 864

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416
           ++  L +  +VEEA+ +F+ ML     AD   + +++DGL +  +LD   +    I+   
Sbjct: 865 LICALCKAGQVEEAQALFDNMLEKEWNADEIVWTVLVDGLLKEGELDLCMKLL-HIMESK 923

Query: 417 NIHDN-YVYAAMIKGLCRSGKIHEA 440
           N   N   Y  + + L R GK  E+
Sbjct: 924 NFTPNIQTYVILGRELSRIGKSIES 948



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 112/408 (27%), Positives = 189/408 (46%), Gaps = 3/408 (0%)

Query: 106 AFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVM 165
            F  L++ L ++G V E   I   + Q     + F    +I   CR+     A  V   M
Sbjct: 242 TFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRM 301

Query: 166 RKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDL 225
            K G  P+ V+Y+++++GLC  G    A  +LEE I+ G  P+ +TY + +  LC     
Sbjct: 302 VKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHE 361

Query: 226 EKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTV 285
           E+A +++  M  +      +     +  L  +      + +   ML+    P+ +T N +
Sbjct: 362 EEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNAL 421

Query: 286 INGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQR 345
           IN  C  GR   ALK+ + M  G     +  T+  II GL   G I++A+ +L++ M + 
Sbjct: 422 INELCVGGRFSTALKIFHWM-EGHGSLANTQTYNEIIKGLCLGGDIEKAM-VLFEKMLKM 479

Query: 346 GYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA 405
           G  P +VTYN ++ G      V  A  + + M   G   D  TY  ++ G  +  +L+ A
Sbjct: 480 GPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESA 539

Query: 406 KRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDG 465
             ++ ++V      +   Y  +I G  + GK+  A+  L  + + G  PN+  YN VI+G
Sbjct: 540 SFYFQEMVECGLNPNPVSYTTLIDGHSKDGKVDIALSLLERMEEMGCNPNVESYNAVING 599

Query: 466 ACKLSMKREAYQILREMRKNGLNPDAVTWRIL-DKLHGNRGNDFGLRI 512
             K +   EA +I  +M + GL P+ +T+  L D L  N    F  +I
Sbjct: 600 LSKENRFSEAEKICDKMAEQGLLPNVITYTTLIDGLCRNGRTQFAFKI 647



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 100/400 (25%), Positives = 172/400 (43%), Gaps = 70/400 (17%)

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
           ++C  ++  L +     GA  +   M   G+ PSL+++N++++ L K G    A  +L +
Sbjct: 206 YSCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQ 265

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
             Q+   P   TY  L+ G C   +L+ A  V          DR                
Sbjct: 266 IFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVF---------DR---------------- 300

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV------------- 306
                     M++  C P+ +T +T+ING C  GR++EAL +L +M+             
Sbjct: 301 ----------MVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTL 350

Query: 307 ---------------------AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQR 345
                                  + C P+  T+T +I GL  +G+++ A+ L Y  M + 
Sbjct: 351 PITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGL-YHKMLKE 409

Query: 346 GYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA 405
           G  P  VTYNA++  L    R   A ++F+ M G G +A++ TY  +I GLC    +++A
Sbjct: 410 GLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKA 469

Query: 406 KRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDG 465
              ++ ++    +     Y  +I G    G ++ A   L  + ++G  P+   YN ++ G
Sbjct: 470 MVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSG 529

Query: 466 ACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
             K      A    +EM + GLNP+ V++  L   H   G
Sbjct: 530 FSKWGKLESASFYFQEMVECGLNPNPVSYTTLIDGHSKDG 569



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 89/333 (26%), Positives = 153/333 (45%), Gaps = 39/333 (11%)

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
           G+ FG+  S ++   L+  L     +E AR + + ML+          N  +  L     
Sbjct: 198 GMGFGF--SLYSCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGK 255

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
             E   +L  + Q    PDV T  ++I G C+   ++ A  V + MV  + C P++VT++
Sbjct: 256 VREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVK-EGCDPNSVTYS 314

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSP------------------------------ 349
           T+I GL N GR+ EAL++L + M ++G  P                              
Sbjct: 315 TLINGLCNEGRVDEALDMLEE-MIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKK 373

Query: 350 -----GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 404
                 + TY A++ GL RL ++E A  +++ ML  G+V ++ TY  +I+ LC   +   
Sbjct: 374 RGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFST 433

Query: 405 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
           A + +  +    ++ +   Y  +IKGLC  G I +A+    +++  G  P +V YN +I+
Sbjct: 434 ALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLIN 493

Query: 465 GACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           G         A ++L  M++NG  PD  T+  L
Sbjct: 494 GYLTKGNVNNAARLLDLMKENGCEPDEWTYNEL 526



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 93/382 (24%), Positives = 169/382 (44%), Gaps = 71/382 (18%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   R   A K+F DM+ R  +PN+ +Y++LI+G C+ G+ D A  +  EM   G+
Sbjct: 632 IDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGL 691

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +T++ L+ G +    ++ A    F L  RM  +     N   ++ L+  L +E  +
Sbjct: 692 APDEVTFTSLIDGFVVLGRIDHA----FLLLRRMV-DVGCKPNYRTYSVLLKGLQKECLL 746

Query: 121 NE---------VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLT 171
            E         V+  +   P  K VN E                   S ++  M + G  
Sbjct: 747 LEEKVAVQHEAVYSFS---PHEKDVNFEI-----------------VSNLLARMSEIGCE 786

Query: 172 PSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKV 231
           P+L +Y+++V GLC+ G    A QL+++  + G+ P    Y  L+   C   +++ A K+
Sbjct: 787 PTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLIAHCKNLEVDHALKI 846

Query: 232 LQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK 291
              + +K                              F L             +I   CK
Sbjct: 847 FHSIEAKG-----------------------------FQLHLS------IYRALICALCK 871

Query: 292 MGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGI 351
            G++EEA  + ++M+  ++ A D + +T ++ GLL  G +   + LL+ +M  + ++P I
Sbjct: 872 AGQVEEAQALFDNMLEKEWNA-DEIVWTVLVDGLLKEGELDLCMKLLH-IMESKNFTPNI 929

Query: 352 VTYNAVLRGLFRLRRVEEAKEV 373
            TY  + R L R+ +  E++ +
Sbjct: 930 QTYVILGRELSRIGKSIESEPL 951


>gi|359486541|ref|XP_002275423.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Vitis vinifera]
          Length = 778

 Score =  208 bits (529), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 139/521 (26%), Positives = 243/521 (46%), Gaps = 38/521 (7%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   R+G+A  L  DMKSRG +PN  +Y  L++GYC+ G +  A  V + M    +
Sbjct: 250 LDTLCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNL 309

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           LP+  TY++L+ G+     +E A    FKL + M E   L  +  ++  L++       +
Sbjct: 310 LPDVWTYNMLINGLCNEGRIEEA----FKLRDEM-ENLKLLPDVVSYNTLINGCLEWSKI 364

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E F++ E+M +            M+   C+ G+   AS  +  M + G +P  V+YN++
Sbjct: 365 SEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTL 424

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK-- 238
           ++G CK G    A++ ++E  +        T   ++  LC E  LE+A K+L     +  
Sbjct: 425 INGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGY 484

Query: 239 --KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIE 296
              +V    +   Y +      N    L +   M + +  P  +T N +I G C+ G+ E
Sbjct: 485 FIDEVSYGTLIVGYFKD----GNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTE 540

Query: 297 EALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
           +A+  LN+++      PD  T+ TI+ G    G +++A    +  M +  + P + T N 
Sbjct: 541 QAISKLNELLESGLL-PDETTYNTILHGYCREGDVEKAFQ-FHNKMVENSFKPDVFTCNI 598

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416
           +LRGL     +E+A ++FN  +  G   D+ TY  +I  LC+  +LD+A     ++    
Sbjct: 599 LLRGLCMEGVLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKE 658

Query: 417 NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN--------------------- 455
              D+Y Y A+I  L  SG+I EA  F+ ++++ G  P+                     
Sbjct: 659 LGPDHYTYNAIITALTDSGRIREAEEFMSKMLEKGNLPDQVLQLDKNETVVTSETSEESD 718

Query: 456 --IVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
              V Y+  I   C     ++A +I  E ++ G+  D  T+
Sbjct: 719 SSSVAYSEWIKELCTEGKYKDAMRIFGESKQKGITVDKSTY 759



 Score =  192 bits (487), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 127/471 (26%), Positives = 222/471 (47%), Gaps = 4/471 (0%)

Query: 27  PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVL 86
           P+     T I  Y ++G+   A+++F +M+   + PN LT + L+  ++R       +  
Sbjct: 133 PSKALLDTAIGAYVQSGQPHHAFQIFKKMKRLRLRPNLLTCNTLLNSLVRYPSSHSVSFS 192

Query: 87  MFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMI 146
                + +K     +VN   F  ++   C E    +       M +     +      ++
Sbjct: 193 REAFNDAIKLGIVPNVN--TFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTIL 250

Query: 147 DSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL 206
           D+LC+ GR   A  ++  M+ RGL P+  +YN +V+G CK G    A  ++E   Q   L
Sbjct: 251 DTLCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLL 310

Query: 207 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 266
           P   TY +L+ GLC E  +E+A K+   M + K +      N  +         +E   +
Sbjct: 311 PDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKL 370

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
           L  M +   +P+ +T N ++  +CK G++++A   +  M    F +PD VT+ T+I G  
Sbjct: 371 LEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGF-SPDCVTYNTLINGYC 429

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
             G + EA   + + M ++      VT N +LR L R +++EEA ++ +     G   D 
Sbjct: 430 KAGNMGEAFRTMDE-MGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDE 488

Query: 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE 446
            +Y  +I G  +   +D A + WD++     I     Y  +I GLC+ GK  +A+  L E
Sbjct: 489 VSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNE 548

Query: 447 LVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           L++SG+ P+   YN ++ G C+     +A+Q   +M +N   PD  T  IL
Sbjct: 549 LLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNIL 599



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 129/486 (26%), Positives = 227/486 (46%), Gaps = 9/486 (1%)

Query: 10  VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSV 69
           V  + + F D    G VPNV ++  +I+GYC   +   A +  + M      P+++TY+ 
Sbjct: 189 VSFSREAFNDAIKLGIVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNT 248

Query: 70  LVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAED 129
           ++  + +   +  A  L+  +  R      L  N   +  LV   C+ G++ E   + E 
Sbjct: 249 ILDTLCKKGRLGDARDLLMDMKSR-----GLLPNRNTYNILVYGYCKMGWLKEAANVIEL 303

Query: 130 MPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG 189
           M Q   + + +    +I+ LC  GR   A ++   M    L P +VSYN++++G  +   
Sbjct: 304 MTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSK 363

Query: 190 CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNI 249
              A++LLEE  + G  P+  T+ ++V+  C E  ++ A   +  M            N 
Sbjct: 364 ISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNT 423

Query: 250 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA-G 308
            +   C   N  E    +  M +   + D +TLNT++   C+  ++EEA K+L+     G
Sbjct: 424 LINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRG 483

Query: 309 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE 368
            F   D V++ T+I G    G +  AL L +  M ++   P  VTYN ++ GL +  + E
Sbjct: 484 YFI--DEVSYGTLIVGYFKDGNVDRALKL-WDEMKEKEIIPSTVTYNCIIGGLCQCGKTE 540

Query: 369 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI 428
           +A    N +L  G++ D TTY  ++ G C    +++A +F + +V  S   D +    ++
Sbjct: 541 QAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILL 600

Query: 429 KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLN 488
           +GLC  G + +A+      V  G   + V YN +I   CK     +A+ +L EM +  L 
Sbjct: 601 RGLCMEGVLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELG 660

Query: 489 PDAVTW 494
           PD  T+
Sbjct: 661 PDHYTY 666



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 97/392 (24%), Positives = 179/392 (45%), Gaps = 19/392 (4%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C   ++ +A      M+  G  P+ V+Y TLI+GYC+ G M  A++  DEM    +  +S
Sbjct: 394 CKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDS 453

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           +T + ++R + R + +E A  L+    +R        ++  ++  L+    ++G V+   
Sbjct: 454 VTLNTILRTLCREKKLEEAYKLLSSARKR-----GYFIDEVSYGTLIVGYFKDGNVDRAL 508

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
           ++ ++M + + +        +I  LC+ G+   A   +  + + GL P   +YN+I+HG 
Sbjct: 509 KLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGY 568

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
           C+ G   +A+Q   + ++  + P   T  +L+ GLC E  LEKA K+    +SK     T
Sbjct: 569 CREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGVLEKALKLFNTWVSKGKAIDT 628

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
              N  + +LC      +  N+L  M + +  PD  T N +I      GRI EA + ++ 
Sbjct: 629 VTYNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHYTYNAIITALTDSGRIREAEEFMSK 688

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
           M+  K   PD V         L + + +  +                V Y+  ++ L   
Sbjct: 689 MLE-KGNLPDQV---------LQLDKNETVVTSETSEESDS----SSVAYSEWIKELCTE 734

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 396
            + ++A  +F      G+  D +TY  ++DGL
Sbjct: 735 GKYKDAMRIFGESKQKGITVDKSTYINLMDGL 766



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/231 (33%), Positives = 124/231 (53%), Gaps = 4/231 (1%)

Query: 277 PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKF-CAPDAVTFTTIIFGLLNVGRIQEAL 335
           P+V T N VI G+C   + ++A++ LN  V GK+ C+PD VT+ TI+  L   GR+ +A 
Sbjct: 206 PNVNTFNIVIYGYCLENKFKDAVEFLN--VMGKYNCSPDNVTYNTILDTLCKKGRLGDAR 263

Query: 336 NLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG 395
           +LL   M  RG  P   TYN ++ G  ++  ++EA  V   M    ++ D  TY ++I+G
Sbjct: 264 DLLMD-MKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLING 322

Query: 396 LCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN 455
           LC   +++EA +  D++     + D   Y  +I G     KI EA   L E+ + GV PN
Sbjct: 323 LCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPN 382

Query: 456 IVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
            V +N+++   CK     +A   + +M ++G +PD VT+  L   +   GN
Sbjct: 383 AVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGN 433



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 127/249 (51%), Gaps = 5/249 (2%)

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGR---IEEALKVLNDMVAGKFCAPDAV 316
           P     +   M + + +P+++T NT++N   +      +  + +  ND +      P+  
Sbjct: 151 PHHAFQIFKKMKRLRLRPNLLTCNTLLNSLVRYPSSHSVSFSREAFNDAIKLGI-VPNVN 209

Query: 317 TFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNC 376
           TF  +I+G     + ++A+  L  VM +   SP  VTYN +L  L +  R+ +A+++   
Sbjct: 210 TFNIVIYGYCLENKFKDAVEFL-NVMGKYNCSPDNVTYNTILDTLCKKGRLGDARDLLMD 268

Query: 377 MLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGK 436
           M   G++ +  TY I++ G C+   L EA    + +   + + D + Y  +I GLC  G+
Sbjct: 269 MKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGR 328

Query: 437 IHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRI 496
           I EA     E+ +  + P++V YN +I+G  + S   EA+++L EM + G+ P+AVT  I
Sbjct: 329 IEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNI 388

Query: 497 LDKLHGNRG 505
           + K +   G
Sbjct: 389 MVKWYCKEG 397


>gi|359479250|ref|XP_002275790.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Vitis vinifera]
          Length = 746

 Score =  207 bits (528), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 128/490 (26%), Positives = 243/490 (49%), Gaps = 7/490 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   ++        DM+ +G  P+VV+Y TLI+ YCR G ++ A+++ D M   G+
Sbjct: 261 INALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGL 320

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P   TY+ ++ G+ +T    RA  ++ ++ +       +S + A +  L+   CR   +
Sbjct: 321 KPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKI-----GMSPDTATYNILLVECCRNDNM 375

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +  RI ++MP    V +  +   +I  L ++G    A +    M+  GL P  V Y  +
Sbjct: 376 MDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTIL 435

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G C++G    A ++ +E ++ G +    TY  ++ GLC E  L +A ++   M  +  
Sbjct: 436 IGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGV 495

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                     +       N  + + +   M+Q   +PDV+T NT+I+GFCK   +E+  +
Sbjct: 496 FPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNE 555

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           + NDM++ +   P+ +++  +I G  N+G + EA   L+  M ++G+   I+T N +++G
Sbjct: 556 LWNDMISRRI-YPNHISYGILINGYCNMGCVSEAFR-LWDEMVEKGFEATIITCNTIVKG 613

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
             R     +A E  + ML  G+V D  TY  +I+G  +   +D A    + +     + D
Sbjct: 614 YCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPD 673

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              Y  ++ G  R G++ EA   + ++++ GV P+   Y  +I+G    +  +EA+++  
Sbjct: 674 VITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHD 733

Query: 481 EMRKNGLNPD 490
           EM + G  PD
Sbjct: 734 EMLQRGFVPD 743



 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 137/535 (25%), Positives = 257/535 (48%), Gaps = 46/535 (8%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           ++ E  + F  +KS+G   ++ +  +L+ G  + G +D+A++++ E+   GV  N  T +
Sbjct: 199 KLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLN 258

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
           +++  + + + +E     +  +     EE+ +  +   +  L+++ CR+G + E F + +
Sbjct: 259 IMINALCKNQKIENTKSFLSDM-----EEKGVFPDVVTYNTLINAYCRQGLLEEAFELMD 313

Query: 129 DMPQGKSVNE-EFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKH 187
            M  GK +    F    +I+ LC++G+   A  V+  M K G++P   +YN ++   C++
Sbjct: 314 SM-SGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRN 372

Query: 188 GGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC 247
              M A ++ +E    G +P   ++  L+  L     L++A K  + M +        I 
Sbjct: 373 DNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIY 432

Query: 248 NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA 307
            I +   C     +E L V   ML+  C  DV+T NT++NG CK   + EA ++  +M  
Sbjct: 433 TILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTE 492

Query: 308 -GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 366
            G F  PD  TFTT+I G    G + +A+ L +++M QR   P +VTYN ++ G  +   
Sbjct: 493 RGVF--PDFYTFTTLINGYSKDGNMNKAVTL-FEMMIQRNLKPDVVTYNTLIDGFCKGSE 549

Query: 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAA 426
           +E+  E++N M+   +  +  +Y I+I+G C    + EA R WD++V             
Sbjct: 550 MEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNT 609

Query: 427 MIKGLCRSGKIHEAVHFLYELV-----------------------------------DSG 451
           ++KG CR+G   +A  FL  ++                                   +SG
Sbjct: 610 IVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSG 669

Query: 452 VTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           + P+++ YNV+++G  +    +EA  I+ +M + G+NPD  T+  L   H  + N
Sbjct: 670 LLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNN 724



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 110/421 (26%), Positives = 207/421 (49%), Gaps = 7/421 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   +   A  +  +M   G  P+  +Y  L+   CR   M  A ++FDEM   GV
Sbjct: 331 INGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGV 390

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P+ +++S L+  + +   +++A     K +  MK    L+ +N  +  L+   CR G +
Sbjct: 391 VPDLVSFSALIGLLSKNGCLDQA----LKYFRDMKNA-GLAPDNVIYTILIGGFCRNGVM 445

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E  ++ ++M +   V +      +++ LC+      A  +   M +RG+ P   ++ ++
Sbjct: 446 SEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTL 505

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++G  K G   +A  L E  IQ    P   TY  L++G C  S++EK  ++   M+S++ 
Sbjct: 506 INGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRI 565

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                   I +   C +   +E   +   M++   +  +IT NT++ G+C+ G   +A +
Sbjct: 566 YPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADE 625

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
            L++M+  K   PD +T+ T+I G +    +  A  L+ + M   G  P ++TYN +L G
Sbjct: 626 FLSNMLL-KGIVPDGITYNTLINGFIKEENMDRAFALVNK-MENSGLLPDVITYNVILNG 683

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
             R  R++EA+ +   M+  GV  D +TY  +I+G    N L EA R  D+++    + D
Sbjct: 684 FSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVPD 743

Query: 421 N 421
           +
Sbjct: 744 D 744



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 122/477 (25%), Positives = 216/477 (45%), Gaps = 46/477 (9%)

Query: 57  HCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCR 116
           +CG   N L + +LVR  ++ R + R     F    R+ + + L V+  A  +L+  L +
Sbjct: 179 NCG--SNPLVFDLLVRTYVQARKL-REGCEAF----RVLKSKGLCVSINACNSLLGGLVK 231

Query: 117 EGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVS 176
            G+V+  + I +++ +       +    MI++LC++ +       +  M ++G+ P +V+
Sbjct: 232 VGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVT 291

Query: 177 YNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFML 236
           YN++++  C+ G    A++L++     G  P   TY  ++ GLC      +A+ VL  ML
Sbjct: 292 YNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEML 351

Query: 237 SKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIE 296
                  T   NI L   C   N  +   +   M      PD+++ + +I    K G ++
Sbjct: 352 KIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLD 411

Query: 297 EALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
           +ALK   DM      APD V +T +I G    G + EAL +  +++ Q G    +VTYN 
Sbjct: 412 QALKYFRDMKNAGL-APDNVIYTILIGGFCRNGVMSEALKVRDEMLEQ-GCVLDVVTYNT 469

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVV--------------------------------- 383
           +L GL + + + EA E+F  M   GV                                  
Sbjct: 470 ILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRN 529

Query: 384 --ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV-YAAMIKGLCRSGKIHEA 440
              D  TY  +IDG C+ +++++    W+D++    I+ N++ Y  +I G C  G + EA
Sbjct: 530 LKPDVVTYNTLIDGFCKGSEMEKVNELWNDMI-SRRIYPNHISYGILINGYCNMGCVSEA 588

Query: 441 VHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
                E+V+ G    I+  N ++ G C+     +A + L  M   G+ PD +T+  L
Sbjct: 589 FRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTL 645


>gi|357499959|ref|XP_003620268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495283|gb|AES76486.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 652

 Score =  207 bits (528), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 131/480 (27%), Positives = 244/480 (50%), Gaps = 16/480 (3%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M+ RG  PN+V+   LI+ +C+ G +  A+ VF ++   G +P+++T++ L++G+     
Sbjct: 111 MEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLIKGLCLKGQ 170

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQ---GKSV 136
           +++A +   K+            +  ++  L+  LC+ G      R A D+ Q   G  V
Sbjct: 171 IQQAFLFHDKVVAL-----GFHFDQISYGTLIHGLCKVGET----RAALDLLQRVDGNLV 221

Query: 137 NEEFAC-GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQ 195
                    +IDS+C+    + A  +   M  +G++P +V+Y++++ G C  G    A  
Sbjct: 222 QPNVVMYNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYSALISGFCILGKLNDAID 281

Query: 196 LLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALC 255
           L  + I     P  +T+ +LV   C +  +++ + V   M+ +         N  +   C
Sbjct: 282 LFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYC 341

Query: 256 LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA 315
           L+K   +  ++   M Q    PD+ + + +INGFCK+ + +EA+ +  +M   K   PD 
Sbjct: 342 LVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEM-HRKNIIPDV 400

Query: 316 VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN 375
           VT++++I GL   GRI  AL L+ Q M  RG  P I TYN++L  L ++ +V++A  +  
Sbjct: 401 VTYSSLIDGLSKSGRISYALQLVDQ-MHDRGVPPTIRTYNSILDALCKIHQVDKAIALLT 459

Query: 376 CMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG 435
            +   G+  +  TY+I+I GLC+S +L++A++ ++ ++   +  +   Y  MI+G C  G
Sbjct: 460 KLKDKGIQPNMYTYSILIKGLCQSGKLEDARKVFEGLLVKGHNLNVDTYTIMIQGFCVEG 519

Query: 436 KIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVT-W 494
             +EA+  L ++ D+G  P+   Y ++I    K      A ++LREM   G+ P  +  W
Sbjct: 520 LFNEALALLSKMEDNGCIPDAKTYEIIILSLFKKDENDMAEKLLREMIARGVRPRQIAIW 579



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 113/437 (25%), Positives = 213/437 (48%), Gaps = 7/437 (1%)

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           N ++YS          DV+ A  L  +L  R         N      ++ SL +  + + 
Sbjct: 49  NFISYSSTSTTFHSNNDVDDAVSLFNRLLRRNTTPPAFEFNK-----ILGSLVKSKHYHT 103

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
           V  +++ M           C  +I+  C+ G    A  V   + K G  P  +++ +++ 
Sbjct: 104 VLYLSQKMEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLIK 163

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           GLC  G   +A+   ++ +  G+   + +Y  L+ GLC   +   A  +LQ +       
Sbjct: 164 GLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQP 223

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
              + N  + ++C +K   E  ++   M+     PDV+T + +I+GFC +G++ +A+ + 
Sbjct: 224 NVVMYNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYSALISGFCILGKLNDAIDLF 283

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
           N M+      PD  TF  ++      G+++E    ++ +M ++G  P  VTYN+++ G  
Sbjct: 284 NKMILENI-KPDVYTFNILVNAFCKDGKMKEG-KTVFDMMMKQGIKPNFVTYNSLMDGYC 341

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
            ++ V +AK +FN M   GV  D  +Y+I+I+G C+  + DEA   + ++   + I D  
Sbjct: 342 LVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVV 401

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
            Y+++I GL +SG+I  A+  + ++ D GV P I  YN ++D  CK+    +A  +L ++
Sbjct: 402 TYSSLIDGLSKSGRISYALQLVDQMHDRGVPPTIRTYNSILDALCKIHQVDKAIALLTKL 461

Query: 483 RKNGLNPDAVTWRILDK 499
           +  G+ P+  T+ IL K
Sbjct: 462 KDKGIQPNMYTYSILIK 478



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 106/451 (23%), Positives = 199/451 (44%), Gaps = 42/451 (9%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   ++ +A      + + G   + +SY TLIHG C+ GE   A  +   +    V PN
Sbjct: 165 LCLKGQIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPN 224

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            + Y+ ++  + + + V  A    F L+  M   + +S +   ++ L+   C  G +N+ 
Sbjct: 225 VVMYNTIIDSMCKVKLVNEA----FDLFSEMI-SKGISPDVVTYSALISGFCILGKLNDA 279

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             +   M       + +    ++++ C+ G+      V  +M K+G+ P+ V+YNS++ G
Sbjct: 280 IDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDG 339

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            C      +A  +     Q G  P   +Y +++ G C                       
Sbjct: 340 YCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCK---------------------- 377

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                        IK   E +N+   M +    PDV+T +++I+G  K GRI  AL++++
Sbjct: 378 -------------IKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVD 424

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            M   +   P   T+ +I+  L  + ++ +A+ LL + +  +G  P + TY+ +++GL +
Sbjct: 425 QM-HDRGVPPTIRTYNSILDALCKIHQVDKAIALLTK-LKDKGIQPNMYTYSILIKGLCQ 482

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
             ++E+A++VF  +L  G   +  TY I+I G C     +EA      +     I D   
Sbjct: 483 SGKLEDARKVFEGLLVKGHNLNVDTYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKT 542

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTP 454
           Y  +I  L +  +   A   L E++  GV P
Sbjct: 543 YEIIILSLFKKDENDMAEKLLREMIARGVRP 573



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 155/342 (45%), Gaps = 40/342 (11%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHG---------------------- 38
           +D +C +  V EA  LF +M S+G  P+VV+Y+ LI G                      
Sbjct: 232 IDSMCKVKLVNEAFDLFSEMISKGISPDVVTYSALISGFCILGKLNDAIDLFNKMILENI 291

Query: 39  -------------YCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANV 85
                        +C+ G+M     VFD M   G+ PN +TY+ L+ G    ++V +A  
Sbjct: 292 KPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKS 351

Query: 86  LMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHM 145
           + F    +     D+     +++ +++  C+    +E   + ++M +   + +      +
Sbjct: 352 I-FNTMAQGGVNPDIQ----SYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSL 406

Query: 146 IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY 205
           ID L +SGR   A ++V  M  RG+ P++ +YNSI+  LCK     +A  LL +    G 
Sbjct: 407 IDGLSKSGRISYALQLVDQMHDRGVPPTIRTYNSILDALCKIHQVDKAIALLTKLKDKGI 466

Query: 206 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 265
            P+ +TY +L++GLC    LE ARKV + +L K          I ++  C+     E L 
Sbjct: 467 QPNMYTYSILIKGLCQSGKLEDARKVFEGLLVKGHNLNVDTYTIMIQGFCVEGLFNEALA 526

Query: 266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA 307
           +L  M    C PD  T   +I    K    + A K+L +M+A
Sbjct: 527 LLSKMEDNGCIPDAKTYEIIILSLFKKDENDMAEKLLREMIA 568



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 56/238 (23%), Positives = 118/238 (49%), Gaps = 5/238 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           MD  C +  V +A  +F  M   G  P++ SY+ +I+G+C+  + D A  +F EM    +
Sbjct: 337 MDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNI 396

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P+ +TYS L+ G+ ++  +  A  L+ ++ +R      +      + +++D+LC+   V
Sbjct: 397 IPDVVTYSSLIDGLSKSGRISYALQLVDQMHDR-----GVPPTIRTYNSILDALCKIHQV 451

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           ++   +   +         +    +I  LC+SG+   A +V   +  +G   ++ +Y  +
Sbjct: 452 DKAIALLTKLKDKGIQPNMYTYSILIKGLCQSGKLEDARKVFEGLLVKGHNLNVDTYTIM 511

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
           + G C  G    A  LL +    G +P   TY++++  L  + + + A K+L+ M+++
Sbjct: 512 IQGFCVEGLFNEALALLSKMEDNGCIPDAKTYEIIILSLFKKDENDMAEKLLREMIAR 569



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 84/176 (47%), Gaps = 5/176 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D L    R+  A +L   M  RG  P + +Y +++   C+  ++D A  +  +++  G+
Sbjct: 407 IDGLSKSGRISYALQLVDQMHDRGVPPTIRTYNSILDALCKIHQVDKAIALLTKLKDKGI 466

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN  TYS+L++G+ ++  +E A     K++E +  +   ++N   +  ++   C EG  
Sbjct: 467 QPNMYTYSILIKGLCQSGKLEDAR----KVFEGLLVKGH-NLNVDTYTIMIQGFCVEGLF 521

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVS 176
           NE   +   M     + +      +I SL +   N  A +++  M  RG+ P  ++
Sbjct: 522 NEALALLSKMEDNGCIPDAKTYEIIILSLFKKDENDMAEKLLREMIARGVRPRQIA 577


>gi|413952239|gb|AFW84888.1| hypothetical protein ZEAMMB73_407218 [Zea mays]
          Length = 668

 Score =  207 bits (528), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 131/491 (26%), Positives = 236/491 (48%), Gaps = 13/491 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R  +A ++    +  G   +V +Y TL+ GYCR G +D A ++   M    V P+
Sbjct: 85  LCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDAARRLIGSM---PVAPD 141

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           + TY+ L+R +     V  A  L+  +  R         N   +  L++++C+     + 
Sbjct: 142 AYTYTPLIRVLCDRGRVADALSLLDDMLRR-----GCQPNVVTYTVLLEAMCKNSGFEQA 196

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             + ++M              +I+ +CR GR   A  ++  +   G  P  VSY +++ G
Sbjct: 197 MAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARDLLNRLFSYGCQPDTVSYTTLLKG 256

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LC         +L  E ++   +P+E T+ +L+   C    +E+A +VLQ M   +    
Sbjct: 257 LCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLQQMTEHECATN 316

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
           T +CNI + ++C      +    L  M    C PD I+  TV+ G C+  R  +A ++L 
Sbjct: 317 TTLCNIVINSICKQGRVDDAFKFLNNMGSYGCNPDTISYTTVLKGLCRAERWNDAKELLK 376

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           +MV    C P+ VTF T I  L   G I++A+ L+ Q M + G + G+VTYNA++ G   
Sbjct: 377 EMVRNN-CPPNEVTFNTFICILCQKGLIEQAIMLIEQ-MQEHGCTVGVVTYNALVNGFCV 434

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
              ++ A E+F  M       ++ TY  ++ GLC + +LD A     +++      +   
Sbjct: 435 QGHIDSALELFRSM---PCKPNTITYTTLLTGLCNAERLDAAAELVAEMLHRDCPPNVVT 491

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           +  ++   C+ G + EA+  + ++++ G TPN++ YN + DG  K     +A ++L  + 
Sbjct: 492 FNVLVNFFCQKGFLDEAIELVEQMMEHGCTPNLITYNTLFDGITKDCSSEDALELLHGLV 551

Query: 484 KNGLNPDAVTW 494
             G++PD +T+
Sbjct: 552 SKGVSPDVITF 562



 Score =  201 bits (512), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 139/518 (26%), Positives = 250/518 (48%), Gaps = 43/518 (8%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   RV +A  L  DM  RG  PNVV+YT L+   C+    + A  V DEMR  G  PN
Sbjct: 152 LCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCKNSGFEQAMAVLDEMRAKGCTPN 211

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKL------------------------WERMKE--- 96
            +TY+V++ G+ R   V+ A  L+ +L                        W+ ++E   
Sbjct: 212 IVTYNVIINGMCREGRVDDARDLLNRLFSYGCQPDTVSYTTLLKGLCASKRWDDVEELFA 271

Query: 97  ---EEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSG 153
              E++   N   F  L+   CR G V    ++ + M + +       C  +I+S+C+ G
Sbjct: 272 EMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLQQMTEHECATNTTLCNIVINSICKQG 331

Query: 154 RNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYK 213
           R   A + +  M   G  P  +SY +++ GLC+      A +LL+E ++    P+E T+ 
Sbjct: 332 RVDDAFKFLNNMGSYGCNPDTISYTTVLKGLCRAERWNDAKELLKEMVRNNCPPNEVTFN 391

Query: 214 VLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQT 273
             +  LC +  +E+A  +++ M            N  +   C+  +    L +   M   
Sbjct: 392 TFICILCQKGLIEQAIMLIEQMQEHGCTVGVVTYNALVNGFCVQGHIDSALELFRSM--- 448

Query: 274 QCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQE 333
            C+P+ IT  T++ G C   R++ A +++ +M+  + C P+ VTF  ++      G + E
Sbjct: 449 PCKPNTITYTTLLTGLCNAERLDAAAELVAEML-HRDCPPNVVTFNVLVNFFCQKGFLDE 507

Query: 334 ALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVI 393
           A+ L+ Q+M + G +P ++TYN +  G+ +    E+A E+ + ++  GV  D  T++ +I
Sbjct: 508 AIELVEQMM-EHGCTPNLITYNTLFDGITKDCSSEDALELLHGLVSKGVSPDVITFSSII 566

Query: 394 DGLCESNQLDEAKRFW---DDI-VWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449
             L + ++++EA + +    DI + P  +    VY  ++ GLC+  +I  A+ FL  +V 
Sbjct: 567 GILSKEDRVEEAIQMFHLAQDIGMRPKAL----VYNKILLGLCKRHEIDNAIDFLAYMVS 622

Query: 450 SGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
           +G  PN   Y ++I+G  +  + +EA  +L  +   G+
Sbjct: 623 NGCMPNESTYIILIEGLAREGLLKEAQDLLSMLCSRGV 660



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 115/448 (25%), Positives = 199/448 (44%), Gaps = 15/448 (3%)

Query: 59  GVLPNSLTYSVLVRGVLRT-RDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCRE 117
           G  P+    + L+R + R  R  + A VL      R  E     V+  A+  LV   CR 
Sbjct: 70  GEAPDVYLCTKLIRNLCRRGRTSDAARVL------RAAEGSGSPVDVFAYNTLVAGYCRY 123

Query: 118 GYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
           G+++   R+   MP      + +    +I  LC  GR   A  ++  M +RG  P++V+Y
Sbjct: 124 GHLDAARRLIGSMPVAP---DAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTY 180

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
             ++  +CK+ G  +A  +L+E    G  P+  TY V++ G+C E  ++ AR +L  + S
Sbjct: 181 TVLLEAMCKNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARDLLNRLFS 240

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
                 T      L+ LC  K   ++  +   M++  C P+ +T + +I  FC+ G +E 
Sbjct: 241 YGCQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVER 300

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           A++VL  M   + CA +      +I  +   GR+ +A   L   M   G +P  ++Y  V
Sbjct: 301 AIQVLQQMTEHE-CATNTTLCNIVINSICKQGRVDDAFKFLNN-MGSYGCNPDTISYTTV 358

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 417
           L+GL R  R  +AKE+   M+      +  T+   I  LC+   +++A    + +     
Sbjct: 359 LKGLCRAERWNDAKELLKEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMQEHGC 418

Query: 418 IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQ 477
                 Y A++ G C  G I  A+     +      PN + Y  ++ G C       A +
Sbjct: 419 TVGVVTYNALVNGFCVQGHIDSALELFRSM---PCKPNTITYTTLLTGLCNAERLDAAAE 475

Query: 478 ILREMRKNGLNPDAVTWRILDKLHGNRG 505
           ++ EM      P+ VT+ +L      +G
Sbjct: 476 LVAEMLHRDCPPNVVTFNVLVNFFCQKG 503



 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 91/339 (26%), Positives = 163/339 (48%), Gaps = 6/339 (1%)

Query: 157 GASRVVYVMRKR-GLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVL 215
           GA+R+V +   R G  P +     ++  LC+ G    A ++L      G       Y  L
Sbjct: 57  GAARLVELSASRDGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTL 116

Query: 216 VEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQC 275
           V G C    L+ AR+++  M    D          +R LC      + L++L  ML+  C
Sbjct: 117 VAGYCRYGHLDAARRLIGSMPVAPDA---YTYTPLIRVLCDRGRVADALSLLDDMLRRGC 173

Query: 276 QPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEAL 335
           QP+V+T   ++   CK    E+A+ VL++M A K C P+ VT+  II G+   GR+ +A 
Sbjct: 174 QPNVVTYTVLLEAMCKNSGFEQAMAVLDEMRA-KGCTPNIVTYNVIINGMCREGRVDDAR 232

Query: 336 NLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG 395
           +LL ++    G  P  V+Y  +L+GL   +R ++ +E+F  M+    + +  T+ ++I  
Sbjct: 233 DLLNRLF-SYGCQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRF 291

Query: 396 LCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN 455
            C    ++ A +    +       +  +   +I  +C+ G++ +A  FL  +   G  P+
Sbjct: 292 FCRGGMVERAIQVLQQMTEHECATNTTLCNIVINSICKQGRVDDAFKFLNNMGSYGCNPD 351

Query: 456 IVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
            + Y  V+ G C+     +A ++L+EM +N   P+ VT+
Sbjct: 352 TISYTTVLKGLCRAERWNDAKELLKEMVRNNCPPNEVTF 390



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/278 (23%), Positives = 120/278 (43%), Gaps = 43/278 (15%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC    + +A  L   M+  G    VV+Y  L++G+C  G +D A ++F  M      PN
Sbjct: 397 LCQKGLIEQAIMLIEQMQEHGCTVGVVTYNALVNGFCVQGHIDSALELFRSM---PCKPN 453

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           ++TY+ L+ G+     ++ A  L+ ++  R     D   N   F  LV+  C++G+++E 
Sbjct: 454 TITYTTLLTGLCNAERLDAAAELVAEMLHR-----DCPPNVVTFNVLVNFFCQKGFLDEA 508

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVS------- 176
             + E M +            + D + +   +  A  +++ +  +G++P +++       
Sbjct: 509 IELVEQMMEHGCTPNLITYNTLFDGITKDCSSEDALELLHGLVSKGVSPDVITFSSIIGI 568

Query: 177 ----------------------------YNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPS 208
                                       YN I+ GLCK      A   L   +  G +P+
Sbjct: 569 LSKEDRVEEAIQMFHLAQDIGMRPKALVYNKILLGLCKRHEIDNAIDFLAYMVSNGCMPN 628

Query: 209 EHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRI 246
           E TY +L+EGL  E  L++A+ +L  + S+  V +  I
Sbjct: 629 ESTYIILIEGLAREGLLKEAQDLLSMLCSRGVVSKNLI 666


>gi|296085006|emb|CBI28421.3| unnamed protein product [Vitis vinifera]
          Length = 740

 Score =  207 bits (528), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 144/491 (29%), Positives = 241/491 (49%), Gaps = 7/491 (1%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           +V EA  +   +      P+V +YT+LI G+CR   +D+A+ VFD M   G  PNS+TYS
Sbjct: 213 KVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYS 272

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
            L+ G+     V+ A      + E M E+  +      +   + +LC   +  E   +  
Sbjct: 273 TLINGLCNEGRVDEA----LDMLEEMIEK-GIEPTVYTYTLPITALCAIEHEEEAIELVA 327

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
            M +            +I  L R G+   A  + + M K GL P+ V+YN++++ LC  G
Sbjct: 328 RMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGG 387

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
               A ++       G L +  TY  +++GLC   D+EKA  + + ML    +      N
Sbjct: 388 RFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYN 447

Query: 249 IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 308
             +       N      +L  M +  C+PD  T N +++GF K G++E A     +MV  
Sbjct: 448 TLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVEC 507

Query: 309 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE 368
               P+ V++T +I G    G++  AL+LL + M + G +P + +YNAV+ GL +  R  
Sbjct: 508 GL-NPNPVSYTALIDGHSKDGKVDIALSLLKR-MEEMGCNPNVESYNAVINGLSKENRFS 565

Query: 369 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI 428
           EA+++ + M+  G++ +  TY  +IDGLC + +   A + + D+     + + Y Y+++I
Sbjct: 566 EAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLI 625

Query: 429 KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLN 488
            GLC+ GK  EA   L E+   G+ P+ V +  +IDG   L     A+ +LR M   G  
Sbjct: 626 YGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDMGCK 685

Query: 489 PDAVTWRILDK 499
           P+  T+ +L K
Sbjct: 686 PNYRTYSVLLK 696



 Score =  207 bits (528), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 135/495 (27%), Positives = 247/495 (49%), Gaps = 7/495 (1%)

Query: 3   QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           QL     V  A  L+  M + G  P+++++ TLI+   + G++  A  +  ++    + P
Sbjct: 172 QLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSP 231

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           +  TY+ L+ G  R R+++    L F +++RM  +E    N+  ++ L++ LC EG V+E
Sbjct: 232 DVFTYTSLILGHCRNRNLD----LAFGVFDRMV-KEGCDPNSVTYSTLINGLCNEGRVDE 286

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
              + E+M +       +     I +LC       A  +V  M+KRG  P++ +Y +++ 
Sbjct: 287 ALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALIS 346

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           GL + G    A  L  + ++ G +P+  TY  L+  LC       A K+  +M     + 
Sbjct: 347 GLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLA 406

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
            T+  N  ++ LCL  +  + + +   ML+    P V+T NT+ING+   G +  A ++L
Sbjct: 407 NTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLL 466

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
            D++    C PD  T+  ++ G    G+++ A +  +Q M + G +P  V+Y A++ G  
Sbjct: 467 -DLMKENGCEPDEWTYNELVSGFSKWGKLESA-SFYFQEMVECGLNPNPVSYTALIDGHS 524

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
           +  +V+ A  +   M  +G   +  +Y  VI+GL + N+  EA++  D +V    + +  
Sbjct: 525 KDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVI 584

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
            Y  +I GLCR+G+   A    +++      PN+  Y+ +I G C+     EA  +L+EM
Sbjct: 585 TYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEM 644

Query: 483 RKNGLNPDAVTWRIL 497
            + GL PD VT+  L
Sbjct: 645 ERKGLAPDEVTFTSL 659



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 109/405 (26%), Positives = 199/405 (49%), Gaps = 7/405 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC +    EA +L   MK RG  PNV +YT LI G  R G+++VA  ++ +M   G++PN
Sbjct: 313 LCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPN 372

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           ++TY+ L+  +        A     K++  M+    L+ N   +  ++  LC  G + + 
Sbjct: 373 TVTYNALINELCVGGRFSTA----LKIFHWMEGHGSLA-NTQTYNEIIKGLCLGGDIEKA 427

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             + E M +   +        +I+     G  + A+R++ +M++ G  P   +YN +V G
Sbjct: 428 MVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSG 487

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
             K G    A    +E ++ G  P+  +Y  L++G   +  ++ A  +L+ M        
Sbjct: 488 FSKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPN 547

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               N  +  L      +E   +   M++    P+VIT  T+I+G C+ GR + A K+ +
Sbjct: 548 VESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFH 607

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           DM   K C P+  T++++I+GL   G+  EA  +L + M ++G +P  VT+ +++ G   
Sbjct: 608 DMEKRK-CLPNLYTYSSLIYGLCQEGKADEA-EILLKEMERKGLAPDEVTFTSLIDGFVV 665

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRF 408
           L R++ A  +   M+ +G   +  TY++++ GL +   L E K F
Sbjct: 666 LGRIDHAFLLLRRMVDMGCKPNYRTYSVLLKGLQKECLLLEEKIF 710



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 133/465 (28%), Positives = 209/465 (44%), Gaps = 39/465 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   RV EA  +  +M  +G  P V +YT  I   C     + A ++   M+  G 
Sbjct: 275 INGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGC 334

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN  TY+ L+ G+ R   +E A  L  K+      +E L  N   +  L++ LC  G  
Sbjct: 335 RPNVQTYTALISGLSRLGKLEVAIGLYHKML-----KEGLVPNTVTYNALINELCVGGRF 389

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +   +I   M    S+        +I  LC  G    A  +   M K G  P++V+YN++
Sbjct: 390 STALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTL 449

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM----L 236
           ++G    G    A +LL+   + G  P E TY  LV G      LE A    Q M    L
Sbjct: 450 INGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGL 509

Query: 237 SKKDVDRTRICNIYLR------ALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFC 290
           +   V  T + + + +      AL L+K           M +  C P+V + N VING  
Sbjct: 510 NPNPVSYTALIDGHSKDGKVDIALSLLKR----------MEEMGCNPNVESYNAVINGLS 559

Query: 291 KMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG 350
           K  R  EA K+ + MV      P+ +T+TT+I GL   GR Q A  + +  M +R   P 
Sbjct: 560 KENRFSEAEKICDKMVEQGL-LPNVITYTTLIDGLCRNGRTQFAFKIFHD-MEKRKCLPN 617

Query: 351 IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA----K 406
           + TY++++ GL +  + +EA+ +   M   G+  D  T+  +IDG     ++D A    +
Sbjct: 618 LYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLR 677

Query: 407 RFWDDIVWPSNIHDNY-VYAAMIKGLCRSGKIHEAVHFLYELVDS 450
           R  D    P     NY  Y+ ++KGL +   + E    ++ LVD+
Sbjct: 678 RMVDMGCKP-----NYRTYSVLLKGLQKECLLLEEK--IFPLVDN 715



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 113/408 (27%), Positives = 190/408 (46%), Gaps = 3/408 (0%)

Query: 106 AFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVM 165
            F  L++ L ++G V E   I   + Q     + F    +I   CR+     A  V   M
Sbjct: 200 TFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRM 259

Query: 166 RKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDL 225
            K G  P+ V+Y+++++GLC  G    A  +LEE I+ G  P+ +TY + +  LC     
Sbjct: 260 VKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHE 319

Query: 226 EKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTV 285
           E+A +++  M  +      +     +  L  +      + +   ML+    P+ +T N +
Sbjct: 320 EEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNAL 379

Query: 286 INGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQR 345
           IN  C  GR   ALK+ + M  G     +  T+  II GL   G I++A+ +L++ M + 
Sbjct: 380 INELCVGGRFSTALKIFHWM-EGHGSLANTQTYNEIIKGLCLGGDIEKAM-VLFEKMLKM 437

Query: 346 GYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA 405
           G  P +VTYN ++ G      V  A  + + M   G   D  TY  ++ G  +  +L+ A
Sbjct: 438 GPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESA 497

Query: 406 KRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDG 465
             ++ ++V      +   Y A+I G  + GK+  A+  L  + + G  PN+  YN VI+G
Sbjct: 498 SFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVING 557

Query: 466 ACKLSMKREAYQILREMRKNGLNPDAVTWRIL-DKLHGNRGNDFGLRI 512
             K +   EA +I  +M + GL P+ +T+  L D L  N    F  +I
Sbjct: 558 LSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKI 605



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 100/400 (25%), Positives = 172/400 (43%), Gaps = 70/400 (17%)

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
           ++C  ++  L +     GA  +   M   G+ PSL+++N++++ L K G    A  +L +
Sbjct: 164 YSCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQ 223

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
             Q+   P   TY  L+ G C   +L+ A  V          DR                
Sbjct: 224 IFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVF---------DR---------------- 258

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV------------- 306
                     M++  C P+ +T +T+ING C  GR++EAL +L +M+             
Sbjct: 259 ----------MVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTL 308

Query: 307 ---------------------AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQR 345
                                  + C P+  T+T +I GL  +G+++ A+ L Y  M + 
Sbjct: 309 PITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGL-YHKMLKE 367

Query: 346 GYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA 405
           G  P  VTYNA++  L    R   A ++F+ M G G +A++ TY  +I GLC    +++A
Sbjct: 368 GLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKA 427

Query: 406 KRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDG 465
              ++ ++    +     Y  +I G    G ++ A   L  + ++G  P+   YN ++ G
Sbjct: 428 MVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSG 487

Query: 466 ACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
             K      A    +EM + GLNP+ V++  L   H   G
Sbjct: 488 FSKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDG 527



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 89/333 (26%), Positives = 153/333 (45%), Gaps = 39/333 (11%)

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
           G+ FG+  S ++   L+  L     +E AR + + ML+          N  +  L     
Sbjct: 156 GMGFGF--SLYSCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGK 213

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
             E   +L  + Q    PDV T  ++I G C+   ++ A  V + MV  + C P++VT++
Sbjct: 214 VREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVK-EGCDPNSVTYS 272

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSP------------------------------ 349
           T+I GL N GR+ EAL++L + M ++G  P                              
Sbjct: 273 TLINGLCNEGRVDEALDMLEE-MIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKK 331

Query: 350 -----GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 404
                 + TY A++ GL RL ++E A  +++ ML  G+V ++ TY  +I+ LC   +   
Sbjct: 332 RGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFST 391

Query: 405 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
           A + +  +    ++ +   Y  +IKGLC  G I +A+    +++  G  P +V YN +I+
Sbjct: 392 ALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLIN 451

Query: 465 GACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           G         A ++L  M++NG  PD  T+  L
Sbjct: 452 GYLTKGNVNNAARLLDLMKENGCEPDEWTYNEL 484



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 103/210 (49%), Gaps = 4/210 (1%)

Query: 291 KMGRIEEALKVLNDM---VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGY 347
           K  R EE ++ + D    ++G        +  T++  L     ++ A NL Y+ M   G 
Sbjct: 136 KACRNEEEIRRVADFLNEISGMGFGFSLYSCNTLLIQLAKFEMVEGARNL-YKQMLNSGI 194

Query: 348 SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKR 407
            P ++T+N ++  L +  +V EA+ + + +    +  D  TY  +I G C +  LD A  
Sbjct: 195 QPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFG 254

Query: 408 FWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGAC 467
            +D +V      ++  Y+ +I GLC  G++ EA+  L E+++ G+ P +  Y + I   C
Sbjct: 255 VFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALC 314

Query: 468 KLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            +  + EA +++  M+K G  P+  T+  L
Sbjct: 315 AIEHEEEAIELVARMKKRGCRPNVQTYTAL 344


>gi|357151724|ref|XP_003575883.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Brachypodium distachyon]
          Length = 757

 Score =  207 bits (528), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 133/502 (26%), Positives = 229/502 (45%), Gaps = 44/502 (8%)

Query: 8   SRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTY 67
           S++      + +M S+G  P+VV++ T+I   CR  +   A  + +EM  C V P+  T 
Sbjct: 175 SKIKLLESAYTEMSSQGIEPDVVTFNTVIDALCRARQARTAVLMLEEMSSCDVAPDETT- 233

Query: 68  SVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIA 127
                                                  F  L++    EG +    R+ 
Sbjct: 234 ---------------------------------------FTTLMEGFVEEGSIEAALRLK 254

Query: 128 EDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKH 187
             M +            +I+  C+ GR   A   +      G  P  V++++ V+GLC++
Sbjct: 255 ARMSEMGCSPTSVTVNVLINGYCKLGRVGDALGYIQQEIADGFEPDRVTFSTFVNGLCQN 314

Query: 188 GGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC 247
           G    A ++L   +Q G  P  +TY  ++  LC   +LE+A+ ++  M+    +  T   
Sbjct: 315 GHVDHALKVLGLMLQEGCEPDVYTYSTVINCLCNNGELEEAKGIVNQMVDSGCLPDTTTF 374

Query: 248 NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA 307
           N  + ALC      E L++   +      P+V T N +IN  CK+G    A+++  +M +
Sbjct: 375 NTLIVALCTENQLEEALDLARELTVKGLSPNVYTFNILINALCKVGDPHLAVRLFEEMKS 434

Query: 308 GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRV 367
              C PD VT+  +I  L + G++ +AL+LL + M   G     VTYN ++ GL + RR+
Sbjct: 435 SG-CTPDEVTYNILIDNLCSSGKLAKALDLLKE-MEVSGCPQSTVTYNTIIDGLCKRRRI 492

Query: 368 EEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAM 427
           EEA+EVF+ M   G+  ++ T+  +IDGLC + ++D+A    D ++      +N  Y ++
Sbjct: 493 EEAEEVFDQMDVTGIGRNAITFNTLIDGLCNAERIDDAAELVDQMISEGLQPNNVTYNSI 552

Query: 428 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
           +   C+ G I +A   L  +  +G   ++V Y  +I+G CK    + A ++LR MR  G+
Sbjct: 553 LTHYCKQGNISKAADILQTMTANGFEVDVVTYATLINGLCKARRTQAALKLLRGMRMKGM 612

Query: 488 NPDAVTWR--ILDKLHGNRGND 507
            P    +   I     GN G D
Sbjct: 613 KPTPKAYNPVIQSLFRGNNGRD 634



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 140/510 (27%), Positives = 233/510 (45%), Gaps = 12/510 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   +   A  +  +M S    P+  ++TTL+ G+   G ++ A ++   M   G 
Sbjct: 203 IDALCRARQARTAVLMLEEMSSCDVAPDETTFTTLMEGFVEEGSIEAALRLKARMSEMGC 262

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEED-LSVNNAAFANLVDSLCREGY 119
            P S+T +VL+ G  +   V  A      L    +E  D    +   F+  V+ LC+ G+
Sbjct: 263 SPTSVTVNVLINGYCKLGRVGDA------LGYIQQEIADGFEPDRVTFSTFVNGLCQNGH 316

Query: 120 VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           V+   ++   M Q     + +    +I+ LC +G    A  +V  M   G  P   ++N+
Sbjct: 317 VDHALKVLGLMLQEGCEPDVYTYSTVINCLCNNGELEEAKGIVNQMVDSGCLPDTTTFNT 376

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++  LC       A  L  E    G  P+ +T+ +L+  LC   D   A ++ + M S  
Sbjct: 377 LIVALCTENQLEEALDLARELTVKGLSPNVYTFNILINALCKVGDPHLAVRLFEEMKSSG 436

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                   NI +  LC      + L++L  M  + C    +T NT+I+G CK  RIEEA 
Sbjct: 437 CTPDEVTYNILIDNLCSSGKLAKALDLLKEMEVSGCPQSTVTYNTIIDGLCKRRRIEEAE 496

Query: 300 KVLNDM-VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
           +V + M V G     +A+TF T+I GL N  RI +A  L+ Q++ + G  P  VTYN++L
Sbjct: 497 EVFDQMDVTG--IGRNAITFNTLIDGLCNAERIDDAAELVDQMISE-GLQPNNVTYNSIL 553

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
               +   + +A ++   M   G   D  TYA +I+GLC++ +   A +    +      
Sbjct: 554 THYCKQGNISKAADILQTMTANGFEVDVVTYATLINGLCKARRTQAALKLLRGMRMKGMK 613

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMK-REAYQ 477
                Y  +I+ L R     +A+    E+ + G  P+   Y +V  G C+     +EA+ 
Sbjct: 614 PTPKAYNPVIQSLFRGNNGRDALSLFREMTEVGGPPDAFTYKIVFRGLCRGGGPIKEAFD 673

Query: 478 ILREMRKNGLNPDAVTWRILDKLHGNRGND 507
            L EM  NG  P+  ++R+L +   N G D
Sbjct: 674 FLVEMADNGFIPEFSSFRMLAEGLLNLGMD 703



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 95/378 (25%), Positives = 175/378 (46%), Gaps = 10/378 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC  +++ EA  L  ++  +G  PNV ++  LI+  C+ G+  +A ++F+EM+  G  P+
Sbjct: 381 LCTENQLEEALDLARELTVKGLSPNVYTFNILINALCKVGDPHLAVRLFEEMKSSGCTPD 440

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY++L+  +  +  + +A  L+ ++     E      +   +  ++D LC+   + E 
Sbjct: 441 EVTYNILIDNLCSSGKLAKALDLLKEM-----EVSGCPQSTVTYNTIIDGLCKRRRIEEA 495

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             + + M              +ID LC + R   A+ +V  M   GL P+ V+YNSI+  
Sbjct: 496 EEVFDQMDVTGIGRNAITFNTLIDGLCNAERIDDAAELVDQMISEGLQPNNVTYNSILTH 555

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK G   +A  +L+     G+     TY  L+ GLC     + A K+L+ M  K     
Sbjct: 556 YCKQGNISKAADILQTMTANGFEVDVVTYATLINGLCKARRTQAALKLLRGMRMKGMKPT 615

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK-MGRIEEALKVL 302
            +  N  +++L    N  + L++   M +    PD  T   V  G C+  G I+EA   L
Sbjct: 616 PKAYNPVIQSLFRGNNGRDALSLFREMTEVGGPPDAFTYKIVFRGLCRGGGPIKEAFDFL 675

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
            +M    F  P+  +F  +  GLLN+G     +  +  ++ +  +    ++    +RG  
Sbjct: 676 VEMADNGFI-PEFSSFRMLAEGLLNLGMDDYLIRAIELIVEKANFRESDIS---AIRGYL 731

Query: 363 RLRRVEEAKEVFNCMLGI 380
           R+R+  +A   F  +L +
Sbjct: 732 RIRKYYDAIATFGRLLEV 749



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 71/162 (43%)

Query: 333 EALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIV 392
           +A +L+   +   G       YN +L  L    +++  +  +  M   G+  D  T+  V
Sbjct: 143 DAFDLVSNQLDMFGVQANTEVYNHLLTVLAEGSKIKLLESAYTEMSSQGIEPDVVTFNTV 202

Query: 393 IDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGV 452
           ID LC + Q   A    +++       D   +  +++G    G I  A+     + + G 
Sbjct: 203 IDALCRARQARTAVLMLEEMSSCDVAPDETTFTTLMEGFVEEGSIEAALRLKARMSEMGC 262

Query: 453 TPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
           +P  V  NV+I+G CKL    +A   +++   +G  PD VT+
Sbjct: 263 SPTSVTVNVLINGYCKLGRVGDALGYIQQEIADGFEPDRVTF 304


>gi|358346916|ref|XP_003637510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503445|gb|AES84648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 718

 Score =  207 bits (527), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 134/478 (28%), Positives = 240/478 (50%), Gaps = 7/478 (1%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M + G V +V ++  LI   C+  ++  A  + +EM + G+ P+ +T++ L++G +   D
Sbjct: 149 MVNEGIVLDVSTFNVLIKALCKAHQLRPAILMLEEMANHGLKPDEITFTTLMQGFIEEGD 208

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
           +  A     K+ ++M     L + N +   LV+  C+EG V E  R   ++ +     ++
Sbjct: 209 LNGA----LKMKKQMLGYGCL-LTNVSVKVLVNGFCKEGRVEEALRFVLEVSEEGFSPDQ 263

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
                +++  CR G  + A  +V  M ++G  P + +YNS++ G+CK G   +A ++L++
Sbjct: 264 VTFNSLVNGFCRIGNVNDALDIVDFMIEKGFDPDVYTYNSLISGMCKLGEFEKAIEILQQ 323

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
            I     P+  TY  L+  LC E+++E A  + + ++SK  +      N  ++ LCL KN
Sbjct: 324 MILRECSPNTVTYNTLISALCKENEIEAATDLARILVSKGLLPDVCTFNTLIQGLCLSKN 383

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
               + +   M    C+PD  T + +I+  C   R++EAL +L +M +   CA +AV + 
Sbjct: 384 QDIAMEMFEEMKNKGCKPDEFTYSILIDSLCYERRLKEALMLLKEMESSG-CARNAVVYN 442

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
           T+I GL    RI++A  +  Q M   G S   VTYN ++ GL + +RVEEA ++ + M+ 
Sbjct: 443 TLIDGLCKSRRIEDAEEIFDQ-MELLGVSRSSVTYNTLIDGLCKNKRVEEASQLMDQMIM 501

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
            G+  D  TY  ++   C    +++A      +       D + Y  +I GLCR+G++  
Sbjct: 502 EGLKPDKFTYNSLLTYFCRVGDIEKAGDIVQTMASNGCEPDIFTYGTLIGGLCRAGRVDV 561

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           A   L  +   G+      YN VI         +E  ++ REM +    PDA+T +I+
Sbjct: 562 ASKLLRSVQMKGIVLTPHAYNPVIQALFMRKRTKEGMRLFREMMEKSDPPDALTHKIV 619



 Score =  191 bits (485), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 130/470 (27%), Positives = 233/470 (49%), Gaps = 21/470 (4%)

Query: 34  TLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWER 93
           TL+    ++   D    +  +++  G +PN+ T++ L++      ++E    L+  L   
Sbjct: 60  TLLLQLTQSSSFDSITTLLKQLKSSGSIPNATTFATLIQSFTNFHEIEN---LLKILENE 116

Query: 94  MKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFAC-----GHMIDS 148
           +  + D +  N A   LV+        +   ++ E M   K VNE           +I +
Sbjct: 117 LGFKPDTNFYNIALNALVE--------DNKLKLVE-MLHSKMVNEGIVLDVSTFNVLIKA 167

Query: 149 LCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPS 208
           LC++ +   A  ++  M   GL P  +++ +++ G  + G    A ++ ++ + +G L +
Sbjct: 168 LCKAHQLRPAILMLEEMANHGLKPDEITFTTLMQGFIEEGDLNGALKMKKQMLGYGCLLT 227

Query: 209 EHTYKVLVEGLCGESDLEKA-RKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVL 267
             + KVLV G C E  +E+A R VL+        D+    N  +   C I N  + L+++
Sbjct: 228 NVSVKVLVNGFCKEGRVEEALRFVLEVSEEGFSPDQVTF-NSLVNGFCRIGNVNDALDIV 286

Query: 268 VFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLN 327
            FM++    PDV T N++I+G CK+G  E+A+++L  M+  + C+P+ VT+ T+I  L  
Sbjct: 287 DFMIEKGFDPDVYTYNSLISGMCKLGEFEKAIEILQQMIL-RECSPNTVTYNTLISALCK 345

Query: 328 VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADST 387
              I+ A + L +++  +G  P + T+N +++GL   +  + A E+F  M   G   D  
Sbjct: 346 ENEIEAATD-LARILVSKGLLPDVCTFNTLIQGLCLSKNQDIAMEMFEEMKNKGCKPDEF 404

Query: 388 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYEL 447
           TY+I+ID LC   +L EA     ++       +  VY  +I GLC+S +I +A     ++
Sbjct: 405 TYSILIDSLCYERRLKEALMLLKEMESSGCARNAVVYNTLIDGLCKSRRIEDAEEIFDQM 464

Query: 448 VDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
              GV+ + V YN +IDG CK     EA Q++ +M   GL PD  T+  L
Sbjct: 465 ELLGVSRSSVTYNTLIDGLCKNKRVEEASQLMDQMIMEGLKPDKFTYNSL 514



 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 95/368 (25%), Positives = 174/368 (47%), Gaps = 10/368 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC  + +  A  L   + S+G +P+V ++ TLI G C +   D+A ++F+EM++ G  P+
Sbjct: 343 LCKENEIEAATDLARILVSKGLLPDVCTFNTLIQGLCLSKNQDIAMEMFEEMKNKGCKPD 402

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             TYS+L+  +   R ++ A +L+ ++     E    + N   +  L+D LC+   + + 
Sbjct: 403 EFTYSILIDSLCYERRLKEALMLLKEM-----ESSGCARNAVVYNTLIDGLCKSRRIEDA 457

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             I + M              +ID LC++ R   AS+++  M   GL P   +YNS++  
Sbjct: 458 EEIFDQMELLGVSRSSVTYNTLIDGLCKNKRVEEASQLMDQMIMEGLKPDKFTYNSLLTY 517

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            C+ G   +A  +++     G  P   TY  L+ GLC    ++ A K+L+ +  K  V  
Sbjct: 518 FCRVGDIEKAGDIVQTMASNGCEPDIFTYGTLIGGLCRAGRVDVASKLLRSVQMKGIVLT 577

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK-MGRIEEALKVL 302
               N  ++AL + K   E + +   M++    PD +T   V  G C   G I+EA+   
Sbjct: 578 PHAYNPVIQALFMRKRTKEGMRLFREMMEKSDPPDALTHKIVFRGLCNGGGPIQEAIDFT 637

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
            +M+  K   P+  +F  +  GL ++      + L+  VM +   S       +++RG  
Sbjct: 638 VEMLE-KGILPEFPSFGFLAEGLCSLSMEDTLIELINMVMEKAQMSE---RETSMIRGFL 693

Query: 363 RLRRVEEA 370
           ++R+  +A
Sbjct: 694 KIRKFNDA 701



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 145/303 (47%), Gaps = 8/303 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   R+ EA  L  +M+S G   N V Y TLI G C++  ++ A ++FD+M   GV
Sbjct: 410 IDSLCYERRLKEALMLLKEMESSGCARNAVVYNTLIDGLCKSRRIEDAEEIFDQMELLGV 469

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             +S+TY+ L+ G+ + + VE A+ LM ++       E L  +   + +L+   CR G +
Sbjct: 470 SRSSVTYNTLIDGLCKNKRVEEASQLMDQMI-----MEGLKPDKFTYNSLLTYFCRVGDI 524

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +   I + M       + F  G +I  LCR+GR   AS+++  ++ +G+  +  +YN +
Sbjct: 525 EKAGDIVQTMASNGCEPDIFTYGTLIGGLCRAGRVDVASKLLRSVQMKGIVLTPHAYNPV 584

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLC-GESDLEKARKVLQFMLSKK 239
           +  L          +L  E ++    P   T+K++  GLC G   +++A      ML K 
Sbjct: 585 IQALFMRKRTKEGMRLFREMMEKSDPPDALTHKIVFRGLCNGGGPIQEAIDFTVEMLEKG 644

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
            +            LC +     L+ ++  +++     +  T  ++I GF K+ +  +AL
Sbjct: 645 ILPEFPSFGFLAEGLCSLSMEDTLIELINMVMEKAQMSERET--SMIRGFLKIRKFNDAL 702

Query: 300 KVL 302
             L
Sbjct: 703 ANL 705


>gi|15238505|ref|NP_201359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180383|sp|Q9LSL9.1|PP445_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65560
 gi|8978284|dbj|BAA98175.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737310|dbj|BAF00601.1| hypothetical protein [Arabidopsis thaliana]
 gi|332010688|gb|AED98071.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 915

 Score =  207 bits (527), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 136/510 (26%), Positives = 252/510 (49%), Gaps = 16/510 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ L     V E  +++ +M      PN+ +Y  +++GYC+ G ++ A +   ++   G+
Sbjct: 190 LNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGL 249

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+  TY+ L+ G  + +D++ A    FK++  M   +    N  A+ +L+  LC    +
Sbjct: 250 DPDFFTYTSLIMGYCQRKDLDSA----FKVFNEMP-LKGCRRNEVAYTHLIHGLCVARRI 304

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E   +   M   +          +I SLC S R   A  +V  M + G+ P++ +Y  +
Sbjct: 305 DEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVL 364

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +  LC      +A +LL + ++ G +P+  TY  L+ G C    +E A  V++ M S+K 
Sbjct: 365 IDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKL 424

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
              TR  N  ++  C   N  + + VL  ML+ +  PDV+T N++I+G C+ G  + A +
Sbjct: 425 SPNTRTYNELIKGYC-KSNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYR 483

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +L+ ++  +   PD  T+T++I  L    R++EA + L+  + Q+G +P +V Y A++ G
Sbjct: 484 LLS-LMNDRGLVPDQWTYTSMIDSLCKSKRVEEACD-LFDSLEQKGVNPNVVMYTALIDG 541

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV----WPS 416
             +  +V+EA  +   ML    + +S T+  +I GLC   +L EA    + +V     P+
Sbjct: 542 YCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPT 601

Query: 417 NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAY 476
              D      +I  L + G    A     +++ SG  P+   Y   I   C+     +A 
Sbjct: 602 VSTD----TILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAE 657

Query: 477 QILREMRKNGLNPDAVTWRILDKLHGNRGN 506
            ++ +MR+NG++PD  T+  L K +G+ G 
Sbjct: 658 DMMAKMRENGVSPDLFTYSSLIKGYGDLGQ 687



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 137/495 (27%), Positives = 241/495 (48%), Gaps = 8/495 (1%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C L  V EA++    +   G  P+  +YT+LI GYC+  ++D A+KVF+EM   G   N 
Sbjct: 229 CKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNE 288

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           + Y+ L+ G+   R ++ A      L+ +MK++E        +  L+ SLC     +E  
Sbjct: 289 VAYTHLIHGLCVARRIDEA----MDLFVKMKDDECFPTVRT-YTVLIKSLCGSERKSEAL 343

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
            + ++M +            +IDSLC   +   A  ++  M ++GL P++++YN++++G 
Sbjct: 344 NLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGY 403

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
           CK G    A  ++E        P+  TY  L++G C +S++ KA  VL  ML +K +   
Sbjct: 404 CKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYC-KSNVHKAMGVLNKMLERKVLPDV 462

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
              N  +   C   N      +L  M      PD  T  ++I+  CK  R+EEA  +  D
Sbjct: 463 VTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLF-D 521

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
            +  K   P+ V +T +I G    G++ EA +L+ + M  +   P  +T+NA++ GL   
Sbjct: 522 SLEQKGVNPNVVMYTALIDGYCKAGKVDEA-HLMLEKMLSKNCLPNSLTFNALIHGLCAD 580

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY 424
            +++EA  +   M+ IG+    +T  I+I  L +    D A   +  ++      D + Y
Sbjct: 581 GKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTY 640

Query: 425 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484
              I+  CR G++ +A   + ++ ++GV+P++  Y+ +I G   L     A+ +L+ MR 
Sbjct: 641 TTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRD 700

Query: 485 NGLNPDAVTWRILDK 499
            G  P   T+  L K
Sbjct: 701 TGCEPSQHTFLSLIK 715



 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 134/474 (28%), Positives = 228/474 (48%), Gaps = 8/474 (1%)

Query: 32  YTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLW 91
           Y TL++   R G +D   +V+ EM    V PN  TY+ +V G  +  +VE AN  + K+ 
Sbjct: 186 YNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIV 245

Query: 92  ERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCR 151
           E       L  +   + +L+   C+   ++  F++  +MP       E A  H+I  LC 
Sbjct: 246 E-----AGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCV 300

Query: 152 SGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHT 211
           + R   A  +   M+     P++ +Y  ++  LC       A  L++E  + G  P+ HT
Sbjct: 301 ARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHT 360

Query: 212 YKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFML 271
           Y VL++ LC +   EKAR++L  ML K  +      N  +   C      + ++V+  M 
Sbjct: 361 YTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELME 420

Query: 272 QTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRI 331
             +  P+  T N +I G+CK   + +A+ VLN M+  K   PD VT+ ++I G    G  
Sbjct: 421 SRKLSPNTRTYNELIKGYCK-SNVHKAMGVLNKMLERKV-LPDVVTYNSLIDGQCRSGNF 478

Query: 332 QEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAI 391
             A  LL  +M  RG  P   TY +++  L + +RVEEA ++F+ +   GV  +   Y  
Sbjct: 479 DSAYRLL-SLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTA 537

Query: 392 VIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 451
           +IDG C++ ++DEA    + ++  + + ++  + A+I GLC  GK+ EA     ++V  G
Sbjct: 538 LIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIG 597

Query: 452 VTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
           + P +    ++I    K      AY   ++M  +G  PDA T+    + +   G
Sbjct: 598 LQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREG 651



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 129/528 (24%), Positives = 251/528 (47%), Gaps = 35/528 (6%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   +  +A +L   M  +G +PNV++Y  LI+GYC+ G ++ A  V + M    +
Sbjct: 365 IDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKL 424

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN+ TY+ L++G  ++ +V +A  ++ K+ ER    + ++ N     +L+D  CR G  
Sbjct: 425 SPNTRTYNELIKGYCKS-NVHKAMGVLNKMLERKVLPDVVTYN-----SLIDGQCRSGNF 478

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +  +R+   M     V +++    MIDSLC+S R   A  +   + ++G+ P++V Y ++
Sbjct: 479 DSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTAL 538

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G CK G    A+ +LE+ +    LP+  T+  L+ GLC +  L++A  + + M+    
Sbjct: 539 IDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGL 598

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                   I +  L    +     +    ML +  +PD  T  T I  +C+ GR+ +A  
Sbjct: 599 QPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAED 658

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           ++  M      +PD  T++++I G  ++G+   A ++L + M   G  P   T+ ++++ 
Sbjct: 659 MMAKMRENGV-SPDLFTYSSLIKGYGDLGQTNFAFDVLKR-MRDTGCEPSQHTFLSLIKH 716

Query: 361 LFRLR------------------RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQL 402
           L  ++                    +   E+   M+   V  ++ +Y  +I G+CE   L
Sbjct: 717 LLEMKYGKQKGSEPELCAMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNL 776

Query: 403 DEAKRFWDDI-----VWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIV 457
             A++ +D +     + PS +    V+ A++   C+  K +EA   + +++  G  P + 
Sbjct: 777 RVAEKVFDHMQRNEGISPSEL----VFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLE 832

Query: 458 CYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
              V+I G  K   K     + + + + G   D + W+I+    G +G
Sbjct: 833 SCKVLICGLYKKGEKERGTSVFQNLLQCGYYEDELAWKIIIDGVGKQG 880



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 136/516 (26%), Positives = 232/516 (44%), Gaps = 27/516 (5%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +  LCG  R  EA  L  +M+  G  PN+ +YT LI   C   + + A ++  +M   G+
Sbjct: 330 IKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGL 389

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +PN +TY+ L+ G  +   +E A V + +L E  K    LS N   +  L+   C+   V
Sbjct: 390 MPNVITYNALINGYCKRGMIEDA-VDVVELMESRK----LSPNTRTYNELIKGYCKSN-V 443

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           ++   +   M + K + +      +ID  CRSG    A R++ +M  RGL P   +Y S+
Sbjct: 444 HKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSM 503

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +  LCK      A  L +   Q G  P+   Y  L++G C    +++A  +L+ MLSK  
Sbjct: 504 IDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNC 563

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           +  +   N  +  LC      E   +   M++   QP V T   +I+   K G  + A  
Sbjct: 564 LPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYS 623

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
               M++     PDA T+TT I      GR+ +A +++ + M + G SP + TY+++++G
Sbjct: 624 RFQQMLSSG-TKPDAHTYTTFIQTYCREGRLLDAEDMMAK-MRENGVSPDLFTYSSLIKG 681

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE----------------SN--QL 402
              L +   A +V   M   G      T+  +I  L E                SN  + 
Sbjct: 682 YGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEF 741

Query: 403 DEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVH-FLYELVDSGVTPNIVCYNV 461
           D      + +V  S   +   Y  +I G+C  G +  A   F +   + G++P+ + +N 
Sbjct: 742 DTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNA 801

Query: 462 VIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           ++   CKL    EA +++ +M   G  P   + ++L
Sbjct: 802 LLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVL 837



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 120/452 (26%), Positives = 201/452 (44%), Gaps = 43/452 (9%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R+ EA  LF  MK     P V +YT LI   C +     A  +  EM   G+ PN
Sbjct: 298 LCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPN 357

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             TY+VL+  +      E+A  L+ ++ E+      L  N   +  L++  C+ G + + 
Sbjct: 358 IHTYTVLIDSLCSQCKFEKARELLGQMLEK-----GLMPNVITYNALINGYCKRGMIEDA 412

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             + E M   K          +I   C+S   H A  V+  M +R + P +V+YNS++ G
Sbjct: 413 VDVVELMESRKLSPNTRTYNELIKGYCKSNV-HKAMGVLNKMLERKVLPDVVTYNSLIDG 471

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            C+ G    AY+LL      G +P + TY  +++ LC    +E+A               
Sbjct: 472 QCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEA--------------- 516

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
              C+++                   + Q    P+V+    +I+G+CK G+++EA  +L 
Sbjct: 517 ---CDLFDS-----------------LEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLE 556

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            M++ K C P+++TF  +I GL   G+++EA  LL + M + G  P + T   ++  L +
Sbjct: 557 KMLS-KNCLPNSLTFNALIHGLCADGKLKEA-TLLEEKMVKIGLQPTVSTDTILIHRLLK 614

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
               + A   F  ML  G   D+ TY   I   C   +L +A+     +       D + 
Sbjct: 615 DGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFT 674

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN 455
           Y+++IKG    G+ + A   L  + D+G  P+
Sbjct: 675 YSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPS 706



 Score =  165 bits (417), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 130/488 (26%), Positives = 217/488 (44%), Gaps = 67/488 (13%)

Query: 75  LRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRI-------- 126
           L + D++    L F  W         SV   ++A+L+  L   GYV  VF+I        
Sbjct: 96  LFSLDLDPKTALNFSHWISQNPRYKHSV--YSYASLLTLLINNGYVGVVFKIRLLMIKSC 153

Query: 127 --------AEDMPQGKSVNEEFACGH---------MIDSLCRSGRNHGASRVVYVMRKRG 169
                     D+ +  + +E F   +         +++SL R G      +V   M +  
Sbjct: 154 DSVGDALYVLDLCRKMNKDERFELKYKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDK 213

Query: 170 LTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKAR 229
           + P++ +YN +V+G CK G    A Q + + ++ G  P   TY  L+ G C   DL+ A 
Sbjct: 214 VCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAF 273

Query: 230 KVLQFMLSK-------------------KDVDRT----------------RICNIYLRAL 254
           KV   M  K                   + +D                  R   + +++L
Sbjct: 274 KVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSL 333

Query: 255 CLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPD 314
           C  +  +E LN++  M +T  +P++ T   +I+  C   + E+A ++L  M+  K   P+
Sbjct: 334 CGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLE-KGLMPN 392

Query: 315 AVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVF 374
            +T+  +I G    G I++A++++ ++M  R  SP   TYN +++G  +   V +A  V 
Sbjct: 393 VITYNALINGYCKRGMIEDAVDVV-ELMESRKLSPNTRTYNELIKGYCK-SNVHKAMGVL 450

Query: 375 NCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRS 434
           N ML   V+ D  TY  +IDG C S   D A R    +     + D + Y +MI  LC+S
Sbjct: 451 NKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKS 510

Query: 435 GKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
            ++ EA      L   GV PN+V Y  +IDG CK     EA+ +L +M      P+++T+
Sbjct: 511 KRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTF 570

Query: 495 RILDKLHG 502
             L  +HG
Sbjct: 571 NAL--IHG 576


>gi|359482689|ref|XP_003632809.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Vitis vinifera]
          Length = 879

 Score =  207 bits (527), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 134/494 (27%), Positives = 235/494 (47%), Gaps = 42/494 (8%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   ++ E  KL  D   +G +PN++ Y TLI GYC+ G+M++A  +F E++  G LP 
Sbjct: 214 LCKEGKLEEGRKLIEDRWGQGCIPNIIFYNTLIDGYCKKGDMEMANGLFIELKLKGFLPT 273

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             TY  ++ G  +  D +  + L+ ++  R      L+VN   +  ++D+  + G++ + 
Sbjct: 274 VETYGAIINGFCKKGDFKAIDRLLMEMNSR-----GLTVNVQVYNTIIDARYKHGHIVKA 328

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
               E M +     +      +I   CR G+   A +++     +GL P+  SY  ++H 
Sbjct: 329 VETIEGMIECGCKPDIVTYNTLISGSCRDGKVSEADQLLEQALGKGLMPNKFSYTPLIHA 388

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK GG  RA   L E  + G+ P   TY  LV GL    +++ A  + + ML +     
Sbjct: 389 YCKQGGYDRASNWLIEMTERGHKPDLVTYGALVHGLVVAGEVDVALTIREKMLERG---- 444

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                                   VF       PD    N +++G CK  ++  A  +L 
Sbjct: 445 ------------------------VF-------PDAGIYNILMSGLCKKFKLPAAKLLLA 473

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           +M+  +   PDA  + T++ G +  G + EA  L +++  ++G +PGIV YNA+++G  +
Sbjct: 474 EML-DQSVLPDAFVYATLVDGFIRNGNLDEARKL-FELTIEKGMNPGIVGYNAMIKGYCK 531

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
              +++A    N M    +  D  TY+ VIDG  + + LD A++ + ++V      +   
Sbjct: 532 FGMMKDAMACINRMKKRHLAPDEFTYSTVIDGYVKQHDLDGAQKMFREMVKMKCKPNVVT 591

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y ++I G CR G +H ++    E+   G+ PN+V Y+++I   CK +   +A     EM 
Sbjct: 592 YTSLINGFCRKGDLHRSLKIFREMQACGLVPNVVTYSILIGSFCKEAKLIDAASFFEEML 651

Query: 484 KNGLNPDAVTWRIL 497
            N   P+ VT+  L
Sbjct: 652 MNKCVPNDVTFNYL 665



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 133/488 (27%), Positives = 241/488 (49%), Gaps = 19/488 (3%)

Query: 17  FFDMKSRGHVP---NVVSYTTLIHGYCRT---GEMDVAYKVFDEMRHCGVLPNSLTYSVL 70
           FFD  SRG      N  +Y++L+    R+    EM+V   V + MR   + P     S++
Sbjct: 79  FFDWVSRGQYSGPINGFAYSSLLKLLARSRVFSEMEV---VLENMRVEEMSPTREAMSIV 135

Query: 71  VRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDM 130
           ++    +  VE+A  L + + +      D+   N+    L++ L + G +    ++ ++M
Sbjct: 136 IQAYSDSGLVEKALELYYFVLKTYTYFPDVIACNS----LLNMLVKLGRIEIARKLYDEM 191

Query: 131 PQ----GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK 186
            +    G    + ++   M+  LC+ G+     +++     +G  P+++ YN+++ G CK
Sbjct: 192 LEIDGAGDRCVDNYSTCIMVKGLCKEGKLEEGRKLIEDRWGQGCIPNIIFYNTLIDGYCK 251

Query: 187 HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRI 246
            G    A  L  E    G+LP+  TY  ++ G C + D +   ++L  M S+      ++
Sbjct: 252 KGDMEMANGLFIELKLKGFLPTVETYGAIINGFCKKGDFKAIDRLLMEMNSRGLTVNVQV 311

Query: 247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV 306
            N  + A     +  + +  +  M++  C+PD++T NT+I+G C+ G++ EA ++L +  
Sbjct: 312 YNTIIDARYKHGHIVKAVETIEGMIECGCKPDIVTYNTLISGSCRDGKVSEADQLL-EQA 370

Query: 307 AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 366
            GK   P+  ++T +I      G    A N L + M +RG+ P +VTY A++ GL     
Sbjct: 371 LGKGLMPNKFSYTPLIHAYCKQGGYDRASNWLIE-MTERGHKPDLVTYGALVHGLVVAGE 429

Query: 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAA 426
           V+ A  +   ML  GV  D+  Y I++ GLC+  +L  AK    +++  S + D +VYA 
Sbjct: 430 VDVALTIREKMLERGVFPDAGIYNILMSGLCKKFKLPAAKLLLAEMLDQSVLPDAFVYAT 489

Query: 427 MIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG 486
           ++ G  R+G + EA       ++ G+ P IV YN +I G CK  M ++A   +  M+K  
Sbjct: 490 LVDGFIRNGNLDEARKLFELTIEKGMNPGIVGYNAMIKGYCKFGMMKDAMACINRMKKRH 549

Query: 487 LNPDAVTW 494
           L PD  T+
Sbjct: 550 LAPDEFTY 557



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 104/449 (23%), Positives = 192/449 (42%), Gaps = 56/449 (12%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C   +V EA +L      +G +PN  SYT LIH YC+ G  D A     EM   G  P+ 
Sbjct: 355 CRDGKVSEADQLLEQALGKGLMPNKFSYTPLIHAYCKQGGYDRASNWLIEMTERGHKPDL 414

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           +TY  LV G++   +V+ A  +  K+ ER      +  +   +  L+  LC++  +    
Sbjct: 415 VTYGALVHGLVVAGEVDVALTIREKMLER-----GVFPDAGIYNILMSGLCKKFKLPAAK 469

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
            +  +M     + + F    ++D   R+G    A ++  +  ++G+ P +V YN+++ G 
Sbjct: 470 LLLAEMLDQSVLPDAFVYATLVDGFIRNGNLDEARKLFELTIEKGMNPGIVGYNAMIKGY 529

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
           CK G    A   +    +    P E TY  +++G   + DL+ A+K+ + M+  K     
Sbjct: 530 CKFGMMKDAMACINRMKKRHLAPDEFTYSTVIDGYVKQHDLDGAQKMFREMVKMK----- 584

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
                                         C+P+V+T  ++INGFC+ G +  +LK+  +
Sbjct: 585 ------------------------------CKPNVVTYTSLINGFCRKGDLHRSLKIFRE 614

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR- 363
           M A     P+ VT++ +I       ++ +A +   +++  +   P  VT+N ++ G  + 
Sbjct: 615 MQACGL-VPNVVTYSILIGSFCKEAKLIDAASFFEEMLMNKCV-PNDVTFNYLVNGFSKN 672

Query: 364 -LRRVEEAKE------------VFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD 410
             R + E                F  M+  G    S  Y  ++  LC+      A +  +
Sbjct: 673 GTRAISEKGNEFQENKQSMFLNFFGRMISDGWAPRSAAYNSILICLCQYGMFRTALQLSN 732

Query: 411 DIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
            +     I D+  + A++ G+C  G+  E
Sbjct: 733 KMTSKGCIPDSVSFVALLHGVCLEGRSKE 761



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 105/399 (26%), Positives = 184/399 (46%), Gaps = 27/399 (6%)

Query: 13  AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVR 72
           A     +M  RGH P++V+Y  L+HG    GE+DVA  + ++M   GV P++  Y++L+ 
Sbjct: 398 ASNWLIEMTERGHKPDLVTYGALVHGLVVAGEVDVALTIREKMLERGVFPDAGIYNILMS 457

Query: 73  GVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAF--ANLVDSLCREGYVNEVFRIAEDM 130
           G+ +   +  A +L+ ++        D SV   AF  A LVD   R G ++E  ++ E +
Sbjct: 458 GLCKKFKLPAAKLLLAEML-------DQSVLPDAFVYATLVDGFIRNGNLDEARKLFE-L 509

Query: 131 PQGKSVNEEF-ACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG 189
              K +N        MI   C+ G    A   +  M+KR L P   +Y++++ G  K   
Sbjct: 510 TIEKGMNPGIVGYNAMIKGYCKFGMMKDAMACINRMKKRHLAPDEFTYSTVIDGYVKQHD 569

Query: 190 CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNI 249
              A ++  E ++    P+  TY  L+ G C + DL ++ K+ + M +   V      +I
Sbjct: 570 LDGAQKMFREMVKMKCKPNVVTYTSLINGFCRKGDLHRSLKIFREMQACGLVPNVVTYSI 629

Query: 250 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGR--IEEA--------- 298
            + + C      +  +    ML  +C P+ +T N ++NGF K G   I E          
Sbjct: 630 LIGSFCKEAKLIDAASFFEEMLMNKCVPNDVTFNYLVNGFSKNGTRAISEKGNEFQENKQ 689

Query: 299 ---LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN 355
              L     M++  + AP +  + +I+  L   G  + AL L  + M  +G  P  V++ 
Sbjct: 690 SMFLNFFGRMISDGW-APRSAAYNSILICLCQYGMFRTALQLSNK-MTSKGCIPDSVSFV 747

Query: 356 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVID 394
           A+L G+    R +E K + +C L    +  +  Y+ ++D
Sbjct: 748 ALLHGVCLEGRSKEWKNIVSCNLNERELQIAVNYSSILD 786



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 110/428 (25%), Positives = 197/428 (46%), Gaps = 12/428 (2%)

Query: 76  RTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKS 135
           R RDVE    L F  W   + +    +N  A+++L+  L R    +E+  + E+M   + 
Sbjct: 69  RIRDVELG--LKFFDWVS-RGQYSGPINGFAYSSLLKLLARSRVFSEMEVVLENMRVEEM 125

Query: 136 VNEEFACGHMIDSLCRSGRNHGASRVVY-VMRKRGLTPSLVSYNSIVHGLCKHGGCMRAY 194
                A   +I +   SG    A  + Y V++     P +++ NS+++ L K G    A 
Sbjct: 126 SPTREAMSIVIQAYSDSGLVEKALELYYFVLKTYTYFPDVIACNSLLNMLVKLGRIEIAR 185

Query: 195 QLLEEGIQFG----YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIY 250
           +L +E ++           ++  ++V+GLC E  LE+ RK+++    +  +      N  
Sbjct: 186 KLYDEMLEIDGAGDRCVDNYSTCIMVKGLCKEGKLEEGRKLIEDRWGQGCIPNIIFYNTL 245

Query: 251 LRALCLIKNPTELLNVLVFMLQTQ-CQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK 309
           +   C  K   E+ N L   L+ +   P V T   +INGFCK G  +   ++L +M +  
Sbjct: 246 IDGYCK-KGDMEMANGLFIELKLKGFLPTVETYGAIINGFCKKGDFKAIDRLLMEMNSRG 304

Query: 310 FCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEE 369
               +   + TII      G I +A+  + + M + G  P IVTYN ++ G  R  +V E
Sbjct: 305 LTV-NVQVYNTIIDARYKHGHIVKAVETI-EGMIECGCKPDIVTYNTLISGSCRDGKVSE 362

Query: 370 AKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIK 429
           A ++    LG G++ +  +Y  +I   C+    D A  +  ++    +  D   Y A++ 
Sbjct: 363 ADQLLEQALGKGLMPNKFSYTPLIHAYCKQGGYDRASNWLIEMTERGHKPDLVTYGALVH 422

Query: 430 GLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNP 489
           GL  +G++  A+    ++++ GV P+   YN+++ G CK      A  +L EM    + P
Sbjct: 423 GLVVAGEVDVALTIREKMLERGVFPDAGIYNILMSGLCKKFKLPAAKLLLAEMLDQSVLP 482

Query: 490 DAVTWRIL 497
           DA  +  L
Sbjct: 483 DAFVYATL 490



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 79/358 (22%), Positives = 159/358 (44%), Gaps = 28/358 (7%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M  LC   ++  A  L  +M  +  +P+   Y TL+ G+ R G +D A K+F+     G+
Sbjct: 456 MSGLCKKFKLPAAKLLLAEMLDQSVLPDAFVYATLVDGFIRNGNLDEARKLFELTIEKGM 515

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P  + Y+ +++G  +   ++ A   +     RMK+   L+ +   ++ ++D   ++  +
Sbjct: 516 NPGIVGYNAMIKGYCKFGMMKDAMACI----NRMKKRH-LAPDEFTYSTVIDGYVKQHDL 570

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +   ++  +M + K          +I+  CR G  H + ++   M+  GL P++V+Y+ +
Sbjct: 571 DGAQKMFREMVKMKCKPNVVTYTSLINGFCRKGDLHRSLKIFREMQACGLVPNVVTYSIL 630

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +   CK    + A    EE +    +P++ T+  LV G         + K  +F  +K+ 
Sbjct: 631 IGSFCKEAKLIDAASFFEEMLMNKCVPNDVTFNYLVNGFSKNGTRAISEKGNEFQENKQS 690

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           +                      LN    M+     P     N+++   C+ G    AL+
Sbjct: 691 M---------------------FLNFFGRMISDGWAPRSAAYNSILICLCQYGMFRTALQ 729

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
           + N M + K C PD+V+F  ++ G+   GR +E  N++   + +R      V Y+++L
Sbjct: 730 LSNKMTS-KGCIPDSVSFVALLHGVCLEGRSKEWKNIVSCNLNERELQIA-VNYSSIL 785



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 119/247 (48%), Gaps = 7/247 (2%)

Query: 264 LNVLVFMLQTQCQ-PDVITLNTVINGFCKMGRIEEALKVLNDMV----AGKFCAPDAVTF 318
           L +  F+L+T    PDVI  N+++N   K+GRIE A K+ ++M+    AG  C  D  + 
Sbjct: 149 LELYYFVLKTYTYFPDVIACNSLLNMLVKLGRIEIARKLYDEMLEIDGAGDRCV-DNYST 207

Query: 319 TTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCML 378
             ++ GL   G+++E   L+     Q G  P I+ YN ++ G  +   +E A  +F  + 
Sbjct: 208 CIMVKGLCKEGKLEEGRKLIEDRWGQ-GCIPNIIFYNTLIDGYCKKGDMEMANGLFIELK 266

Query: 379 GIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIH 438
             G +    TY  +I+G C+        R   ++       +  VY  +I    + G I 
Sbjct: 267 LKGFLPTVETYGAIINGFCKKGDFKAIDRLLMEMNSRGLTVNVQVYNTIIDARYKHGHIV 326

Query: 439 EAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILD 498
           +AV  +  +++ G  P+IV YN +I G+C+     EA Q+L +    GL P+  ++  L 
Sbjct: 327 KAVETIEGMIECGCKPDIVTYNTLISGSCRDGKVSEADQLLEQALGKGLMPNKFSYTPLI 386

Query: 499 KLHGNRG 505
             +  +G
Sbjct: 387 HAYCKQG 393


>gi|147840312|emb|CAN63985.1| hypothetical protein VITISV_001389 [Vitis vinifera]
          Length = 850

 Score =  207 bits (526), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 128/490 (26%), Positives = 242/490 (49%), Gaps = 7/490 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   ++        DM+ +G  P+VV+Y TLI+ YCR G ++ A+++ D M   G+
Sbjct: 365 INALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGL 424

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P   TY+ ++ G+ +T    RA  ++ ++ +       +S + A +  L+   CR   +
Sbjct: 425 KPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKI-----GMSPDTATYNILLVECCRNDNM 479

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +  RI ++MP    V +  +   +I  L ++G    A +    M+  GL P  V Y  +
Sbjct: 480 MDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTIL 539

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G C++G    A ++ +E ++ G      TY  ++ GLC E  L +A ++   M  +  
Sbjct: 540 IGGFCRNGVMSEALKVRDEMLEQGCXLDVVTYNTILNGLCKEKMLSEADELFTEMTERGV 599

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                     +       N  + + +   M+Q   +PDV+T NT+I+GFCK   +E+  +
Sbjct: 600 FPDFYTFTTLINGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNE 659

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           + NDM++ +   P+ +++  +I G  N+G + EA   L+  M ++G+   I+T N +++G
Sbjct: 660 LWNDMISRRI-YPNHISYGILINGYCNMGCVSEAFR-LWDEMVEKGFEATIITCNTIVKG 717

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
             R     +A E  + ML  G+V D  TY  +I+G  +   +D A    + +     + D
Sbjct: 718 YCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPD 777

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              Y  ++ G  R G++ EA   + ++++ GV P+   Y  +I+G    +  +EA+++  
Sbjct: 778 VITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHD 837

Query: 481 EMRKNGLNPD 490
           EM + G  PD
Sbjct: 838 EMLQRGFVPD 847



 Score =  197 bits (502), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 137/535 (25%), Positives = 257/535 (48%), Gaps = 46/535 (8%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           ++ E  + F  +KS+G   ++ +  +L+ G  + G +D+A++++ E+   GV  N  T +
Sbjct: 303 KLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLN 362

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
           +++  + + + +E     +  +     EE+ +  +   +  L+++ CR+G + E F + +
Sbjct: 363 IMINALCKNQKIENTKSFLSDM-----EEKGVFPDVVTYNTLINAYCRQGLLEEAFELMD 417

Query: 129 DMPQGKSVNE-EFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKH 187
            M  GK +    F    +I+ LC++G+   A  V+  M K G++P   +YN ++   C++
Sbjct: 418 SM-SGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRN 476

Query: 188 GGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC 247
              M A ++ +E    G +P   ++  L+  L     L++A K  + M +        I 
Sbjct: 477 DNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIY 536

Query: 248 NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA 307
            I +   C     +E L V   ML+  C  DV+T NT++NG CK   + EA ++  +M  
Sbjct: 537 TILIGGFCRNGVMSEALKVRDEMLEQGCXLDVVTYNTILNGLCKEKMLSEADELFTEMTE 596

Query: 308 -GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 366
            G F  PD  TFTT+I G    G + +A+ L +++M QR   P +VTYN ++ G  +   
Sbjct: 597 RGVF--PDFYTFTTLINGYXKDGNMNKAVTL-FEMMIQRNLKPDVVTYNTLIDGFCKGSE 653

Query: 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAA 426
           +E+  E++N M+   +  +  +Y I+I+G C    + EA R WD++V             
Sbjct: 654 MEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNT 713

Query: 427 MIKGLCRSGKIHEAVHFLYELV-----------------------------------DSG 451
           ++KG CR+G   +A  FL  ++                                   +SG
Sbjct: 714 IVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSG 773

Query: 452 VTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           + P+++ YNV+++G  +    +EA  I+ +M + G+NPD  T+  L   H  + N
Sbjct: 774 LLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNN 828



 Score =  167 bits (424), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 109/421 (25%), Positives = 206/421 (48%), Gaps = 7/421 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   +   A  +  +M   G  P+  +Y  L+   CR   M  A ++FDEM   GV
Sbjct: 435 INGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGV 494

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P+ +++S L+  + +   +++A     K +  MK    L+ +N  +  L+   CR G +
Sbjct: 495 VPDLVSFSALIGLLSKNGCLDQA----LKYFRDMKNA-GLAPDNVIYTILIGGFCRNGVM 549

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E  ++ ++M +     +      +++ LC+      A  +   M +RG+ P   ++ ++
Sbjct: 550 SEALKVRDEMLEQGCXLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTL 609

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++G  K G   +A  L E  IQ    P   TY  L++G C  S++EK  ++   M+S++ 
Sbjct: 610 INGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRI 669

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                   I +   C +   +E   +   M++   +  +IT NT++ G+C+ G   +A +
Sbjct: 670 YPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADE 729

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
            L++M+  K   PD +T+ T+I G +    +  A  L+ + M   G  P ++TYN +L G
Sbjct: 730 FLSNMLL-KGIVPDGITYNTLINGFIKEENMDRAFALVNK-MENSGLLPDVITYNVILNG 787

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
             R  R++EA+ +   M+  GV  D +TY  +I+G    N L EA R  D+++    + D
Sbjct: 788 FSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVPD 847

Query: 421 N 421
           +
Sbjct: 848 D 848



 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 122/477 (25%), Positives = 216/477 (45%), Gaps = 46/477 (9%)

Query: 57  HCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCR 116
           +CG   N L + +LVR  ++ R + R     F    R+ + + L V+  A  +L+  L +
Sbjct: 283 NCG--SNPLVFDLLVRTYVQARKL-REGCEAF----RVLKSKGLCVSINACNSLLGGLVK 335

Query: 117 EGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVS 176
            G+V+  + I +++ +       +    MI++LC++ +       +  M ++G+ P +V+
Sbjct: 336 VGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVT 395

Query: 177 YNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFML 236
           YN++++  C+ G    A++L++     G  P   TY  ++ GLC      +A+ VL  ML
Sbjct: 396 YNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEML 455

Query: 237 SKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIE 296
                  T   NI L   C   N  +   +   M      PD+++ + +I    K G ++
Sbjct: 456 KIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLD 515

Query: 297 EALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
           +ALK   DM      APD V +T +I G    G + EAL +  +++ Q G    +VTYN 
Sbjct: 516 QALKYFRDMKNAGL-APDNVIYTILIGGFCRNGVMSEALKVRDEMLEQ-GCXLDVVTYNT 573

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVV--------------------------------- 383
           +L GL + + + EA E+F  M   GV                                  
Sbjct: 574 ILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTLFEMMIQRN 633

Query: 384 --ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV-YAAMIKGLCRSGKIHEA 440
              D  TY  +IDG C+ +++++    W+D++    I+ N++ Y  +I G C  G + EA
Sbjct: 634 LKPDVVTYNTLIDGFCKGSEMEKVNELWNDMI-SRRIYPNHISYGILINGYCNMGCVSEA 692

Query: 441 VHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
                E+V+ G    I+  N ++ G C+     +A + L  M   G+ PD +T+  L
Sbjct: 693 FRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTL 749


>gi|50878351|gb|AAT85126.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 920

 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 145/589 (24%), Positives = 265/589 (44%), Gaps = 102/589 (17%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C   RV +A +   +M+  G   N+V+Y  ++  YC  G  + A ++ + ++  G+ PN 
Sbjct: 229 CRDGRVAQAVEFVEEMEGMGLEVNLVAYHAVMDCYCGMGWTEDARRILESLQRKGLSPNV 288

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           +TY++LV+G  +   +E A     ++ + MKE  D+ V+  A+  +++  C+ G +++  
Sbjct: 289 VTYTLLVKGYCKDGRMEEAE----RVVKEMKETGDIVVDEVAYGMMINGYCQRGRMDDAT 344

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
           R+  +M         F    MI+ LC+ GR     +V+  M   G+ P   SYN+++ G 
Sbjct: 345 RVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGY 404

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
           C+ G   +A+++    ++ G   +  TY  L++G C    ++ A + L F++ K+ V   
Sbjct: 405 CREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDDALR-LWFLMLKRGVAPN 463

Query: 245 RI-CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
            I C+  L  L       + LN+    L      +VIT NTVING CK+GR+ EA ++L+
Sbjct: 464 EISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVINGLCKIGRMAEAEELLD 523

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQV---------------------- 341
            M   + C PD++T+ T+  G   +G++  A +L+ ++                      
Sbjct: 524 RMKELR-CPPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHLGFAPSVEMFNSFITGHFIA 582

Query: 342 ------------MPQRGYSPGIVTYNAVLRG----------------------------- 360
                       M  RG SP +VTY A++ G                             
Sbjct: 583 KQWHKVNDIHSEMSARGLSPNLVTYGALIAGWCKEGNLHEACNLYFEMVNNGMNPNVFIC 642

Query: 361 ------LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVID-------------------- 394
                  ++  +V+EA  V   ++ I ++   +   I ID                    
Sbjct: 643 SALMSCFYKEGKVDEANLVLQKLVNIDMIPGCSISTIEIDKISHVVDTIADGNPHSANVM 702

Query: 395 ------GLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELV 448
                 GLC+S ++ +AK  ++ +     + DN+ Y+++I G   SG I EA      ++
Sbjct: 703 WNVIIFGLCKSGRIADAKSLFESLRNKRFLPDNFTYSSLIHGCAASGSIDEAFSLRDVML 762

Query: 449 DSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            +G+TPNI+ YN +I G CK      A  +  +++  G++P+ +T+  L
Sbjct: 763 SAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSKGISPNGITYNTL 811



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 127/476 (26%), Positives = 231/476 (48%), Gaps = 14/476 (2%)

Query: 11  GEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVL 70
           G A  ++  M+  G +P+  +   +   YCR G +  A +  +EM   G+  N + Y  +
Sbjct: 200 GMAAMVYGQMRIAGVLPDEFTVAIMAKAYCRDGRVAQAVEFVEEMEGMGLEVNLVAYHAV 259

Query: 71  VR---GVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIA 127
           +    G+  T D  R       + E + + + LS N   +  LV   C++G + E  R+ 
Sbjct: 260 MDCYCGMGWTEDARR-------ILESL-QRKGLSPNVVTYTLLVKGYCKDGRMEEAERVV 311

Query: 128 EDMPQ-GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK 186
           ++M + G  V +E A G MI+  C+ GR   A+RV   MR  G+  +L  YN++++GLCK
Sbjct: 312 KEMKETGDIVVDEVAYGMMINGYCQRGRMDDATRVRNEMRDAGIHVNLFVYNTMINGLCK 371

Query: 187 HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRI 246
            G      ++L+E    G  P +++Y  L++G C E  + KA ++ + M+       T  
Sbjct: 372 LGRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLT 431

Query: 247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV 306
            N  L+  C +    + L +   ML+    P+ I+ +T+++G  K G+ E+AL +  + +
Sbjct: 432 YNTLLKGFCSLHAIDDALRLWFLMLKRGVAPNEISCSTLLDGLFKAGKTEQALNLWKETL 491

Query: 307 AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 366
           A +  A + +TF T+I GL  +GR+ EA  LL + M +    P  +TY  +  G  +L +
Sbjct: 492 A-RGLAKNVITFNTVINGLCKIGRMAEAEELLDR-MKELRCPPDSLTYRTLFDGYCKLGQ 549

Query: 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAA 426
           +  A  + N M  +G       +   I G   + Q  +      ++       +   Y A
Sbjct: 550 LGTATHLMNKMEHLGFAPSVEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGA 609

Query: 427 MIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
           +I G C+ G +HEA +  +E+V++G+ PN+   + ++    K     EA  +L+++
Sbjct: 610 LIAGWCKEGNLHEACNLYFEMVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQKL 665



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 137/596 (22%), Positives = 261/596 (43%), Gaps = 104/596 (17%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCG- 59
           MD  CG+    +A ++   ++ +G  PNVV+YT L+ GYC+ G M+ A +V  EM+  G 
Sbjct: 260 MDCYCGMGWTEDARRILESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGD 319

Query: 60  VLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGY 119
           ++ + + Y +++ G  +   ++ A  +  ++      +  + VN   +  +++ LC+ G 
Sbjct: 320 IVVDEVAYGMMINGYCQRGRMDDATRVRNEM-----RDAGIHVNLFVYNTMINGLCKLGR 374

Query: 120 VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           + EV ++ ++M       ++++   +ID  CR G    A  +  +M + GL  + ++YN+
Sbjct: 375 MEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNT 434

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++ G C       A +L    ++ G  P+E +   L++GL      E+A  + +  L++ 
Sbjct: 435 LLKGFCSLHAIDDALRLWFLMLKRGVAPNEISCSTLLDGLFKAGKTEQALNLWKETLARG 494

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA- 298
                   N  +  LC I    E   +L  M + +C PD +T  T+ +G+CK+G++  A 
Sbjct: 495 LAKNVITFNTVINGLCKIGRMAEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTAT 554

Query: 299 --------------LKVLNDMVAGKFCA-------------------PDAVTFTTIIFG- 324
                         +++ N  + G F A                   P+ VT+  +I G 
Sbjct: 555 HLMNKMEHLGFAPSVEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGW 614

Query: 325 ----------------------------------LLNVGRIQEALNLLYQVMPQRGYSPG 350
                                                 G++ EA NL+ Q +      PG
Sbjct: 615 CKEGNLHEACNLYFEMVNNGMNPNVFICSALMSCFYKEGKVDEA-NLVLQKLVNIDMIPG 673

Query: 351 I--------------------------VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 384
                                      V +N ++ GL +  R+ +AK +F  +     + 
Sbjct: 674 CSISTIEIDKISHVVDTIADGNPHSANVMWNVIIFGLCKSGRIADAKSLFESLRNKRFLP 733

Query: 385 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFL 444
           D+ TY+ +I G   S  +DEA    D ++      +   Y ++I GLC+SGK+  AV+  
Sbjct: 734 DNFTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLF 793

Query: 445 YELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKL 500
            +L   G++PN + YN +ID  CK     EA+++ ++M + G   +A+  ++LD++
Sbjct: 794 NKLQSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEGYMEEAI--KLLDQM 847



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 125/492 (25%), Positives = 221/492 (44%), Gaps = 47/492 (9%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C L  + +A +L+F M  RG  PN +S +TL+ G  + G+ + A  ++ E    G+  N
Sbjct: 439 FCSLHAIDDALRLWFLMLKRGVAPNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKN 498

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +T++ ++ G+ +   +  A  L+    +RMKE      ++  +  L D  C+ G +   
Sbjct: 499 VITFNTVINGLCKIGRMAEAEELL----DRMKELR-CPPDSLTYRTLFDGYCKLGQLGTA 553

Query: 124 FRIAEDM------PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
             +   M      P  +  N  F  GH I     + + H  + +   M  RGL+P+LV+Y
Sbjct: 554 THLMNKMEHLGFAPSVEMFNS-FITGHFI-----AKQWHKVNDIHSEMSARGLSPNLVTY 607

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
            +++ G CK G    A  L  E +  G  P+      L+     E  +++A  VLQ ++ 
Sbjct: 608 GALIAGWCKEGNLHEACNLYFEMVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQKLV- 666

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
             ++D    C+I    +       ++ +V+  +         +  N +I G CK GRI +
Sbjct: 667 --NIDMIPGCSISTIEI------DKISHVVDTIADGNPHSANVMWNVIIFGLCKSGRIAD 718

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           A  +   +   +F  PD  T++++I G    G I EA +L   VM   G +P I+TYN++
Sbjct: 719 AKSLFESLRNKRFL-PDNFTYSSLIHGCAASGSIDEAFSL-RDVMLSAGLTPNIITYNSL 776

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 417
           + GL +  ++  A  +FN +   G+  +  TY  +ID  C+  +  EA +    +V    
Sbjct: 777 IYGLCKSGKLSRAVNLFNKLQSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQKMV---- 832

Query: 418 IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQ 477
                            G + EA+  L +++++ V PN + Y  +I G  K     E  +
Sbjct: 833 ---------------EEGYMEEAIKLLDQMIENNVDPNYITYCTLIHGYIKSGNMEEISK 877

Query: 478 ILREMRKNGLNP 489
           +  EM   GL P
Sbjct: 878 LYDEMHIRGLLP 889



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 105/445 (23%), Positives = 206/445 (46%), Gaps = 11/445 (2%)

Query: 62  PNSLTYSVLVRGVLRTRDVERANVLMFKL-------WERMKE-EEDLSVNNAAFANLVDS 113
           P+ ++++ L+  + R R    A  L+  L       +  + E   D + +  +F  L+ +
Sbjct: 98  PSLVSHAQLLHILARARRFHDARALLSSLPPHAEPLFPHLAEVYRDFTFSAVSFDLLLRA 157

Query: 114 LCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPS 173
               G ++    + + M +        +C  +++ L +SG    A+ V   MR  G+ P 
Sbjct: 158 HADAGQLSSALNVFDGMGKVGCRPSLRSCNRLLNKLVQSGDPGMAAMVYGQMRIAGVLPD 217

Query: 174 LVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQ 233
             +   +    C+ G   +A + +EE    G   +   Y  +++  CG    E AR++L+
Sbjct: 218 EFTVAIMAKAYCRDGRVAQAVEFVEEMEGMGLEVNLVAYHAVMDCYCGMGWTEDARRILE 277

Query: 234 FMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQT-QCQPDVITLNTVINGFCKM 292
            +  K          + ++  C      E   V+  M +T     D +    +ING+C+ 
Sbjct: 278 SLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYGMMINGYCQR 337

Query: 293 GRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIV 352
           GR+++A +V N+M        +   + T+I GL  +GR++E   +L Q M   G  P   
Sbjct: 338 GRMDDATRVRNEMRDAGIHV-NLFVYNTMINGLCKLGRMEEVQKVL-QEMEDVGMRPDKY 395

Query: 353 TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI 412
           +YN ++ G  R   + +A E+   M+  G+ A + TY  ++ G C  + +D+A R W  +
Sbjct: 396 SYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDDALRLWFLM 455

Query: 413 VWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMK 472
           +      +    + ++ GL ++GK  +A++   E +  G+  N++ +N VI+G CK+   
Sbjct: 456 LKRGVAPNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVINGLCKIGRM 515

Query: 473 REAYQILREMRKNGLNPDAVTWRIL 497
            EA ++L  M++    PD++T+R L
Sbjct: 516 AEAEELLDRMKELRCPPDSLTYRTL 540



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 94/354 (26%), Positives = 165/354 (46%), Gaps = 18/354 (5%)

Query: 161 VVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE-------------GIQFGYLP 207
            +++ R     PSLVS+  ++H L +      A  LL                +   +  
Sbjct: 87  ALHLFRLAPSRPSLVSHAQLLHILARARRFHDARALLSSLPPHAEPLFPHLAEVYRDFTF 146

Query: 208 SEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVL 267
           S  ++ +L+        L  A  V   M         R CN  L  L    +P     V 
Sbjct: 147 SAVSFDLLLRAHADAGQLSSALNVFDGMGKVGCRPSLRSCNRLLNKLVQSGDPGMAAMVY 206

Query: 268 VFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLN 327
             M      PD  T+  +   +C+ GR+ +A++ + +M  G     + V +  ++     
Sbjct: 207 GQMRIAGVLPDEFTVAIMAKAYCRDGRVAQAVEFVEEM-EGMGLEVNLVAYHAVMDCYCG 265

Query: 328 VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG-VVADS 386
           +G  ++A  +L + + ++G SP +VTY  +++G  +  R+EEA+ V   M   G +V D 
Sbjct: 266 MGWTEDARRIL-ESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDE 324

Query: 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN-YVYAAMIKGLCRSGKIHEAVHFLY 445
             Y ++I+G C+  ++D+A R  +++   + IH N +VY  MI GLC+ G++ E    L 
Sbjct: 325 VAYGMMINGYCQRGRMDDATRVRNEMR-DAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQ 383

Query: 446 ELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
           E+ D G+ P+   YN +IDG C+    R+A+++ R M +NGL    +T+  L K
Sbjct: 384 EMEDVGMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLK 437



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 105/205 (51%), Gaps = 24/205 (11%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R+ +A  LF  ++++  +P+  +Y++LIHG   +G +D A+ + D M   G+ PN
Sbjct: 710 LCKSGRIADAKSLFESLRNKRFLPDNFTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPN 769

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY+ L+ G+ ++  + RA  L  KL     + + +S N   +  L+D  C+EG   E 
Sbjct: 770 IITYNSLIYGLCKSGKLSRAVNLFNKL-----QSKGISPNGITYNTLIDEYCKEGKTTEA 824

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           F++ + M     V E    G+M +++          +++  M +  + P+ ++Y +++HG
Sbjct: 825 FKLKQKM-----VEE----GYMEEAI----------KLLDQMIENNVDPNYITYCTLIHG 865

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPS 208
             K G      +L +E    G LP+
Sbjct: 866 YIKSGNMEEISKLYDEMHIRGLLPT 890



 Score = 47.4 bits (111), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 16/80 (20%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHV----------------PNVVSYTTLIHGYCRTGE 44
           +D+ C   +  EA KL   M   G++                PN ++Y TLIHGY ++G 
Sbjct: 812 IDEYCKEGKTTEAFKLKQKMVEEGYMEEAIKLLDQMIENNVDPNYITYCTLIHGYIKSGN 871

Query: 45  MDVAYKVFDEMRHCGVLPNS 64
           M+   K++DEM   G+LP +
Sbjct: 872 MEEISKLYDEMHIRGLLPTN 891


>gi|225452992|ref|XP_002263038.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 644

 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 129/489 (26%), Positives = 237/489 (48%), Gaps = 9/489 (1%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M S G   NV +   LI+ +C    ++ A+ V  ++   G  P++ +++ L++G+     
Sbjct: 100 MDSFGIPHNVYTLNVLINSFCHLNRVNFAFSVLAKILKLGCQPDTASFTTLIKGLCLEGQ 159

Query: 80  VERANVLMFKL-WERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNE 138
           +  A  L  K+ WE  + +         +A L++ LC+ G+ +   R+   M +G    +
Sbjct: 160 IGEALHLFDKMIWEGFQPDV------VIYATLINGLCKTGHTSAAIRLLRSMEKGNCQPD 213

Query: 139 EFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLE 198
               G +I SLC+  +   A  +   M  +G++P++V+ NS+V+ LC  G       LL 
Sbjct: 214 VVVYGTLIHSLCKDRQQTQAFNLFSEMITKGISPNIVTCNSLVYALCNLGEWKHVNTLLN 273

Query: 199 EGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIK 258
           E +    +P+  +   +V+ LC E  + +A  V+  M               +   CL  
Sbjct: 274 EMVDSKIMPNAISLTTVVDALCKEGMVAQAHDVVDMMFQSGVEPDVVTYTALIDGHCLRS 333

Query: 259 NPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTF 318
              E + V   M+   C P+V + NT+ING+CK+ R+++A+ +  +M   K   P+ VT+
Sbjct: 334 EMDEAVKVFDMMVHKGCAPNVFSYNTLINGYCKIERMDKAMYLFEEMCRQKL-IPNTVTY 392

Query: 319 TTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCML 378
            T+I GL +VGR+Q+A+ L ++ M   G  P +VTY  +L  L +   +++A  +   + 
Sbjct: 393 NTLIHGLCHVGRLQDAIAL-FREMVACGQIPDLVTYRILLDYLCKNCHLDKAMALLKAIE 451

Query: 379 GIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIH 438
           G  +  D   Y IVIDG+C + +L++A+  + ++       + + Y  M  GLC+ G + 
Sbjct: 452 GSNLDPDIQIYTIVIDGMCRAGELEDARDLFSNLSSKGLKPNVWTYNIMTHGLCKRGLLD 511

Query: 439 EAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILD 498
           EA     E+ ++  + +   YN +  G  + +    A Q+L EM   G + D  T  +L 
Sbjct: 512 EATKLFMEMDENACSADGCTYNTITQGFLRNNETSRAIQLLEEMLARGFSCDVSTTTLLV 571

Query: 499 KLHGNRGND 507
            +  + G D
Sbjct: 572 GMLSDDGLD 580



 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 119/465 (25%), Positives = 229/465 (49%), Gaps = 11/465 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C L+RV  A  +   +   G  P+  S+TTLI G C  G++  A  +FD+M   G 
Sbjct: 116 INSFCHLNRVNFAFSVLAKILKLGCQPDTASFTTLIKGLCLEGQIGEALHLFDKMIWEGF 175

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ + Y+ L+ G+ +T     A  L+     R  E+ +   +   +  L+ SLC++   
Sbjct: 176 QPDVVIYATLINGLCKTGHTSAAIRLL-----RSMEKGNCQPDVVVYGTLIHSLCKDRQQ 230

Query: 121 NEVFRIAEDM-PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
            + F +  +M  +G S N    C  ++ +LC  G     + ++  M    + P+ +S  +
Sbjct: 231 TQAFNLFSEMITKGISPNI-VTCNSLVYALCNLGEWKHVNTLLNEMVDSKIMPNAISLTT 289

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           +V  LCK G   +A+ +++   Q G  P   TY  L++G C  S++++A KV   M+ K 
Sbjct: 290 VVDALCKEGMVAQAHDVVDMMFQSGVEPDVVTYTALIDGHCLRSEMDEAVKVFDMMVHKG 349

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                   N  +   C I+   + + +   M + +  P+ +T NT+I+G C +GR+++A+
Sbjct: 350 CAPNVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIPNTVTYNTLIHGLCHVGRLQDAI 409

Query: 300 KVLNDMVA-GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
            +  +MVA G+   PD VT+  ++  L     + +A+ LL + +      P I  Y  V+
Sbjct: 410 ALFREMVACGQI--PDLVTYRILLDYLCKNCHLDKAMALL-KAIEGSNLDPDIQIYTIVI 466

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
            G+ R   +E+A+++F+ +   G+  +  TY I+  GLC+   LDEA + + ++   +  
Sbjct: 467 DGMCRAGELEDARDLFSNLSSKGLKPNVWTYNIMTHGLCKRGLLDEATKLFMEMDENACS 526

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463
            D   Y  + +G  R+ +   A+  L E++  G + ++    +++
Sbjct: 527 ADGCTYNTITQGFLRNNETSRAIQLLEEMLARGFSCDVSTTTLLV 571



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 98/391 (25%), Positives = 191/391 (48%), Gaps = 2/391 (0%)

Query: 107 FANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMR 166
           FA ++ S+ +    + V  ++  M      +  +    +I+S C   R + A  V+  + 
Sbjct: 77  FAKILTSITKVKRYSTVLSLSRKMDSFGIPHNVYTLNVLINSFCHLNRVNFAFSVLAKIL 136

Query: 167 KRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLE 226
           K G  P   S+ +++ GLC  G    A  L ++ I  G+ P    Y  L+ GLC      
Sbjct: 137 KLGCQPDTASFTTLIKGLCLEGQIGEALHLFDKMIWEGFQPDVVIYATLINGLCKTGHTS 196

Query: 227 KARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVI 286
            A ++L+ M          +    + +LC  +  T+  N+   M+     P+++T N+++
Sbjct: 197 AAIRLLRSMEKGNCQPDVVVYGTLIHSLCKDRQQTQAFNLFSEMITKGISPNIVTCNSLV 256

Query: 287 NGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
              C +G  +    +LN+MV  K   P+A++ TT++  L   G + +A +++  +M Q G
Sbjct: 257 YALCNLGEWKHVNTLLNEMVDSKI-MPNAISLTTVVDALCKEGMVAQAHDVV-DMMFQSG 314

Query: 347 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
             P +VTY A++ G      ++EA +VF+ M+  G   +  +Y  +I+G C+  ++D+A 
Sbjct: 315 VEPDVVTYTALIDGHCLRSEMDEAVKVFDMMVHKGCAPNVFSYNTLINGYCKIERMDKAM 374

Query: 407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466
             ++++     I +   Y  +I GLC  G++ +A+    E+V  G  P++V Y +++D  
Sbjct: 375 YLFEEMCRQKLIPNTVTYNTLIHGLCHVGRLQDAIALFREMVACGQIPDLVTYRILLDYL 434

Query: 467 CKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           CK     +A  +L+ +  + L+PD   + I+
Sbjct: 435 CKNCHLDKAMALLKAIEGSNLDPDIQIYTIV 465



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 116/479 (24%), Positives = 220/479 (45%), Gaps = 12/479 (2%)

Query: 32  YTTLIHG-----YCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVL 86
           + +L+H      Y     +D A   F+ M H    P+ + ++ ++  + +   V+R + +
Sbjct: 37  FLSLLHNRFRSKYLHFNTLDDALSSFNRMLHMHPPPSIVDFAKILTSITK---VKRYSTV 93

Query: 87  MFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMI 146
           +     R  +   +  N      L++S C    VN  F +   + +     +  +   +I
Sbjct: 94  LS--LSRKMDSFGIPHNVYTLNVLINSFCHLNRVNFAFSVLAKILKLGCQPDTASFTTLI 151

Query: 147 DSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL 206
             LC  G+   A  +   M   G  P +V Y ++++GLCK G    A +LL    +    
Sbjct: 152 KGLCLEGQIGEALHLFDKMIWEGFQPDVVIYATLINGLCKTGHTSAAIRLLRSMEKGNCQ 211

Query: 207 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 266
           P    Y  L+  LC +    +A  +   M++K        CN  + ALC +     +  +
Sbjct: 212 PDVVVYGTLIHSLCKDRQQTQAFNLFSEMITKGISPNIVTCNSLVYALCNLGEWKHVNTL 271

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
           L  M+ ++  P+ I+L TV++  CK G + +A  V+ DM+      PD VT+T +I G  
Sbjct: 272 LNEMVDSKIMPNAISLTTVVDALCKEGMVAQAHDVV-DMMFQSGVEPDVVTYTALIDGHC 330

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
               + EA+ + + +M  +G +P + +YN ++ G  ++ R+++A  +F  M    ++ ++
Sbjct: 331 LRSEMDEAVKV-FDMMVHKGCAPNVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIPNT 389

Query: 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE 446
            TY  +I GLC   +L +A   + ++V    I D   Y  ++  LC++  + +A+  L  
Sbjct: 390 VTYNTLIHGLCHVGRLQDAIALFREMVACGQIPDLVTYRILLDYLCKNCHLDKAMALLKA 449

Query: 447 LVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
           +  S + P+I  Y +VIDG C+     +A  +   +   GL P+  T+ I+      RG
Sbjct: 450 IEGSNLDPDIQIYTIVIDGMCRAGELEDARDLFSNLSSKGLKPNVWTYNIMTHGLCKRG 508


>gi|53793262|dbj|BAD54485.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 713

 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 136/506 (26%), Positives = 240/506 (47%), Gaps = 42/506 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    + EA  LF  MK  G +P+VV++ +LI GY + GE+D   ++ +EMR  G 
Sbjct: 195 IDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSGC 254

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             + +TY+ L+    +   +E A    +  +  MK                    REG +
Sbjct: 255 KADVVTYNALINCFCKFGRMETA----YGYFAAMK--------------------REGVM 290

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
             V   +                  +D+ C+ G    A ++   MR RG+  +  +Y  +
Sbjct: 291 ANVVTFST----------------FVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCL 334

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G CK G    A  LL+E ++ G   +  TY VLV+GLC E  + +A  VL+ M     
Sbjct: 335 IDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGV 394

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                +    +    + KN  + L +L  M     + D+     +I G C + +++EA  
Sbjct: 395 RANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKS 454

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +L  M       P+ + +TT++      G++ EA+ +L +++   G+ P ++TY A++ G
Sbjct: 455 LLTKMDESGL-EPNYIIYTTMMDACFKSGKVPEAIAMLQKIL-DSGFQPNVITYCALIDG 512

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L +   ++EA   FN M  +G+  +   Y  ++DGLC++  L+EA + ++++V      D
Sbjct: 513 LCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLD 572

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
             VY A++ G  + G +H+A     +++DSG+  ++ CY   I G C L+M  EA ++  
Sbjct: 573 KVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFS 632

Query: 481 EMRKNGLNPDAVTWRILDKLHGNRGN 506
           EM  +G+ PD   +  L   +   GN
Sbjct: 633 EMIGHGIAPDRAVYNCLISKYQKLGN 658



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 113/419 (26%), Positives = 185/419 (44%), Gaps = 46/419 (10%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C    V EA KLF  M+ RG   N  +YT LI G C+ G +D A  + DEM   GV
Sbjct: 300 VDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGV 359

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             N +TY+VLV G+ + R V  A  ++     RM E+  +  N   +  L+         
Sbjct: 360 PLNVVTYTVLVDGLCKERKVAEAEDVL-----RMMEKAGVRANELLYTTLIHGHFMNKNS 414

Query: 121 NEVFRIAEDMPQGKSVNEEFAC-GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
            +   +  +M + K +  + +  G +I  LC   +   A  ++  M + GL P+ + Y +
Sbjct: 415 EKALGLLSEM-KNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTT 473

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++    K G    A  +L++ +  G+ P+  TY  L++GLC    +++A      M    
Sbjct: 474 MMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKM---- 529

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                       R L L                    P+V     +++G CK G + EA+
Sbjct: 530 ------------RDLGL-------------------DPNVQAYTALVDGLCKNGCLNEAV 558

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           ++ N+MV  K  + D V +T ++ G L  G + +A  L  + M   G    +  Y   + 
Sbjct: 559 QLFNEMV-HKGMSLDKVVYTALLDGYLKQGNLHDAFALKAK-MIDSGLQLDLFCYTCFIS 616

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI--VWPS 416
           G   L  + EA+EVF+ M+G G+  D   Y  +I    +   L+EA    D++  V PS
Sbjct: 617 GFCNLNMMPEAREVFSEMIGHGIAPDRAVYNCLISKYQKLGNLEEAISLQDEMERVLPS 675



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 82/160 (51%), Gaps = 4/160 (2%)

Query: 338 LYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLC 397
           L++ +P    +P + T+N V+  L +   + EA+ +F+ M  +G + D  T+  +IDG  
Sbjct: 179 LFEQLP----APNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYG 234

Query: 398 ESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIV 457
           +  +LDE ++  +++       D   Y A+I   C+ G++  A  +   +   GV  N+V
Sbjct: 235 KCGELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVV 294

Query: 458 CYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            ++  +D  CK  + REA ++  +MR  G+  +  T+  L
Sbjct: 295 TFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCL 334


>gi|224113511|ref|XP_002316516.1| predicted protein [Populus trichocarpa]
 gi|222865556|gb|EEF02687.1| predicted protein [Populus trichocarpa]
          Length = 761

 Score =  206 bits (524), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 141/522 (27%), Positives = 245/522 (46%), Gaps = 43/522 (8%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           +AHK+F  MK+ G VP+V ++T  I  +CRT     A ++ + M   G   N++ Y  +V
Sbjct: 129 QAHKVFLRMKNVGIVPDVYTFTIRIKSFCRTKRPHSALRLLNNMVSQGCQLNAVAYCTVV 188

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP 131
            G       E   V  ++L+  M     +  + + F  L+ +LC++G V E  R+   + 
Sbjct: 189 AGFYE----ENYRVEAYELFNDMLRI-GIFPDVSTFNKLLHTLCKKGEVQESERLLNKVL 243

Query: 132 QGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCM 191
           +    +  F     I  LCR G   GA  ++  + + GLTP +V+YN+++ GLCK+   +
Sbjct: 244 KKGMCSNLFTFNIFIQGLCRKGMLSGAMSMLDSVIREGLTPDVVTYNTLICGLCKNSNVV 303

Query: 192 RAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK------------- 238
            A + L + +  G  P   TY  L++G C    L+ A K+LQ  + K             
Sbjct: 304 EAEKYLHKLVNGGLEPDGFTYNTLIDGYCKMGMLQNAEKILQGAICKGFVPDEFTYCSLI 363

Query: 239 ------KDVDRTR----------------ICNIYLRALCLIKNPTELLNVLVFMLQTQCQ 276
                  ++DR                  + N+ ++ LC      + L ++  M +  C 
Sbjct: 364 NGLCQNDEIDRALALFNAALGKGLKPTVILYNMLIKGLCQEGLILQALQMMNEMSENGCS 423

Query: 277 PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALN 336
            D+ T N VING CKMG + +A  ++ND +A  +  PD  TF T+I G     +++  + 
Sbjct: 424 SDIWTYNLVINGLCKMGCVSDANNLMNDAIAKGY-VPDVFTFNTLIDGYCKQLKMETTIQ 482

Query: 337 LLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 396
           +L + M   G +P ++TYN+VL GL +  + E+  E F  M+  G V +  TY I+ + L
Sbjct: 483 ILNK-MWSHGVTPDVITYNSVLNGLSKAVKNEDLMETFETMVEKGCVPNKITYNILTESL 541

Query: 397 CESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS-GVTPN 455
           C++ +++EA    D+I+      D   +A +I G   +G +  A      + +   V+  
Sbjct: 542 CKAGKVNEALDLVDEILNKGITPDTVSFATIISGFANNGDLKGAYQLFRRMGEQYKVSHT 601

Query: 456 IVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
              YN++I+   +        ++  EM   G  PD  T+R++
Sbjct: 602 TATYNIMINAFAEKLDLHMGEKLFLEMGAGGCAPDTYTYRVM 643



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 125/493 (25%), Positives = 228/493 (46%), Gaps = 8/493 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +  LC    V E+ +L   +  +G   N+ ++   I G CR G +  A  + D +   G+
Sbjct: 223 LHTLCKKGEVQESERLLNKVLKKGMCSNLFTFNIFIQGLCRKGMLSGAMSMLDSVIREGL 282

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TY+ L+ G+ +  +V  A   + KL     E +  + N      L+D  C+ G +
Sbjct: 283 TPDVVTYNTLICGLCKNSNVVEAEKYLHKLVNGGLEPDGFTYNT-----LIDGYCKMGML 337

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
               +I +       V +EF    +I+ LC++     A  +      +GL P+++ YN +
Sbjct: 338 QNAEKILQGAICKGFVPDEFTYCSLINGLCQNDEIDRALALFNAALGKGLKPTVILYNML 397

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GLC+ G  ++A Q++ E  + G      TY +++ GLC    +  A  ++   ++K  
Sbjct: 398 IKGLCQEGLILQALQMMNEMSENGCSSDIWTYNLVINGLCKMGCVSDANNLMNDAIAKGY 457

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           V      N  +   C        + +L  M      PDVIT N+V+NG  K  + E+ ++
Sbjct: 458 VPDVFTFNTLIDGYCKQLKMETTIQILNKMWSHGVTPDVITYNSVLNGLSKAVKNEDLME 517

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
               MV  K C P+ +T+  +   L   G++ EAL+L+ +++  +G +P  V++  ++ G
Sbjct: 518 TFETMVE-KGCVPNKITYNILTESLCKAGKVNEALDLVDEIL-NKGITPDTVSFATIISG 575

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADST-TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
                 ++ A ++F  M     V+ +T TY I+I+   E   L   ++ + ++       
Sbjct: 576 FANNGDLKGAYQLFRRMGEQYKVSHTTATYNIMINAFAEKLDLHMGEKLFLEMGAGGCAP 635

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           D Y Y  MI G C +G       FL E+++ G  P++  +  VI+  C      EA  I+
Sbjct: 636 DTYTYRVMIDGFCITGNTDSGYKFLLEMIEKGFIPSLTTFGRVINCLCVQHRVHEAVDII 695

Query: 480 REMRKNGLNPDAV 492
             M  NG+ P+ V
Sbjct: 696 HFMVHNGIVPEVV 708



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 118/467 (25%), Positives = 221/467 (47%), Gaps = 9/467 (1%)

Query: 32  YTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLW 91
           Y   +  Y R G++  A  VF+ M      P+ L+Y+ ++  ++ +   ++A+    K++
Sbjct: 79  YIGAMKSYGRKGKVQEAVDVFERMDFYNCEPSVLSYNAIMNILVESGYFKQAH----KVF 134

Query: 92  ERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDM-PQGKSVNEEFACGHMIDSLC 150
            RMK    +  +   F   + S CR    +   R+  +M  QG  +N    C  ++    
Sbjct: 135 LRMK-NVGIVPDVYTFTIRIKSFCRTKRPHSALRLLNNMVSQGCQLNAVAYC-TVVAGFY 192

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
                  A  +   M + G+ P + ++N ++H LCK G    + +LL + ++ G   +  
Sbjct: 193 EENYRVEAYELFNDMLRIGIFPDVSTFNKLLHTLCKKGEVQESERLLNKVLKKGMCSNLF 252

Query: 211 TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM 270
           T+ + ++GLC +  L  A  +L  ++ +         N  +  LC   N  E    L  +
Sbjct: 253 TFNIFIQGLCRKGMLSGAMSMLDSVIREGLTPDVVTYNTLICGLCKNSNVVEAEKYLHKL 312

Query: 271 LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR 330
           +    +PD  T NT+I+G+CKMG ++ A K+L   +   F  PD  T+ ++I GL     
Sbjct: 313 VNGGLEPDGFTYNTLIDGYCKMGMLQNAEKILQGAICKGF-VPDEFTYCSLINGLCQNDE 371

Query: 331 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYA 390
           I  AL  L+     +G  P ++ YN +++GL +   + +A ++ N M   G  +D  TY 
Sbjct: 372 IDRAL-ALFNAALGKGLKPTVILYNMLIKGLCQEGLILQALQMMNEMSENGCSSDIWTYN 430

Query: 391 IVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 450
           +VI+GLC+   + +A    +D +    + D + +  +I G C+  K+   +  L ++   
Sbjct: 431 LVINGLCKMGCVSDANNLMNDAIAKGYVPDVFTFNTLIDGYCKQLKMETTIQILNKMWSH 490

Query: 451 GVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           GVTP+++ YN V++G  K     +  +    M + G  P+ +T+ IL
Sbjct: 491 GVTPDVITYNSVLNGLSKAVKNEDLMETFETMVEKGCVPNKITYNIL 537



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 99/229 (43%), Gaps = 26/229 (11%)

Query: 2   DQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEM-RHCGV 60
           + LC   +V EA  L  ++ ++G  P+ VS+ T+I G+   G++  AY++F  M     V
Sbjct: 539 ESLCKAGKVNEALDLVDEILNKGITPDTVSFATIISGFANNGDLKGAYQLFRRMGEQYKV 598

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
              + TY++++       D+     L  ++          + +   +  ++D  C  G  
Sbjct: 599 SHTTATYNIMINAFAEKLDLHMGEKLFLEMGAG-----GCAPDTYTYRVMIDGFCITGNT 653

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS- 179
           +  ++   +M +   +      G +I+ LC   R H A  +++ M   G+ P +V+  S 
Sbjct: 654 DSGYKFLLEMIEKGFIPSLTTFGRVINCLCVQHRVHEAVDIIHFMVHNGIVPEVVNSISE 713

Query: 180 -----------IVHGLCKHGGCMR--AYQLLEEGI-----QFGYLPSEH 210
                      +V  L K   C+   AY+LL +GI     Q   LP+ H
Sbjct: 714 ADKKVVAAPKIVVEDLLKR-SCITYYAYELLYDGIRDKKTQKQKLPNRH 761


>gi|449507709|ref|XP_004163108.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 999

 Score =  206 bits (524), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 136/503 (27%), Positives = 242/503 (48%), Gaps = 10/503 (1%)

Query: 10  VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSV 69
           + EA ++  +M +RG   NVV+Y  +I G  + GEM  A  +F+EM   G+ P++ TY++
Sbjct: 362 IEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGIEPDTWTYNL 421

Query: 70  LVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAED 129
           L+ G L++ D+ +A  L+ ++  R      L+ +   ++ L+  LC    + +   + + 
Sbjct: 422 LIDGYLKSHDMAKACELLAEMKAR-----KLTPSPFTYSVLISGLCHSSDLQKANEVLDQ 476

Query: 130 MPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG 189
           M +       F  G +I +  +  R   A  ++ +M   G+ P L  YN ++ GLC+   
Sbjct: 477 MIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKK 536

Query: 190 CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNI 249
              A  LL +  + G  P+ HTY   +       +++ A +  + MLS   V    I  I
Sbjct: 537 VEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTI 596

Query: 250 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK 309
            ++  C + N  E L+    ML+    PD+   + +I+   K G+ +EA+ V    +   
Sbjct: 597 LIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTG 656

Query: 310 FCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR--GLFRLRRV 367
              PD   + ++I G    G I++A + LY  M   G +P IV YN ++   G  +   +
Sbjct: 657 -VVPDVFLYNSLISGFCKEGDIEKA-SQLYDEMLHNGINPNIVVYNTLINDYGYCKSGNL 714

Query: 368 EEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAM 427
            EA ++F+ M+  G+  D   Y I+IDG  +   L++A   + +    S +     + ++
Sbjct: 715 TEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKS-VGSLSAFNSL 773

Query: 428 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
           I   C+ GK+ EA     ++VD  +TPNIV Y ++ID   K  M  EA Q+  +M    +
Sbjct: 774 IDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNI 833

Query: 488 NPDAVTWRILDKLHGNRGNDFGL 510
            P+ +T+  L   +   GN F +
Sbjct: 834 IPNTLTYTSLLLSYNQIGNRFKM 856



 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 140/503 (27%), Positives = 239/503 (47%), Gaps = 10/503 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEM-RHCG 59
           M  L   + +G   K++  M     VP+V +YT +I  +C+ G++     V  EM + C 
Sbjct: 214 MRDLLKANMMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEMEKECK 273

Query: 60  VLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGY 119
             PN  TY+  + G+ +T  V+ A  +     +++  E+ L  +   +  LVD  C++  
Sbjct: 274 --PNLFTYNAFIGGLCQTGAVDEALEV-----KKLMMEKGLGPDGHTYTLLVDGFCKQKR 326

Query: 120 VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
             E   I E MP        F    +ID   + G    A R+   M  RGL  ++V+YN+
Sbjct: 327 SKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNA 386

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++ G+ K G   +A  L  E +  G  P   TY +L++G     D+ KA ++L  M ++K
Sbjct: 387 MIGGIAKAGEMAKAMSLFNEMLMAGIEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARK 446

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                   ++ +  LC   +  +   VL  M++   +P+V    T+I  + +  R E A+
Sbjct: 447 LTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAI 506

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           ++L  M+A     PD   +  +I GL    +++EA  LL   M ++G  P   TY A + 
Sbjct: 507 ELLKIMIANG-VLPDLFCYNCLIIGLCRAKKVEEAKMLLVD-MGEKGIKPNAHTYGAFIN 564

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
              +   ++ A+  F  ML  G+V ++  Y I+I G C+     EA   +  ++    I 
Sbjct: 565 LYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIP 624

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           D   Y+A+I  L ++GK  EA+    + + +GV P++  YN +I G CK     +A Q+ 
Sbjct: 625 DIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLY 684

Query: 480 REMRKNGLNPDAVTWRILDKLHG 502
            EM  NG+NP+ V +  L   +G
Sbjct: 685 DEMLHNGINPNIVVYNTLINDYG 707



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 113/486 (23%), Positives = 218/486 (44%), Gaps = 45/486 (9%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC  S + +A+++   M   G  PNV  Y TLI  Y +    ++A ++   M   GVLP+
Sbjct: 461 LCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPD 520

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
              Y+ L+ G+ R + VE A +L+  + E+      +  N   +   ++   + G +   
Sbjct: 521 LFCYNCLIIGLCRAKKVEEAKMLLVDMGEK-----GIKPNAHTYGAFINLYSKSGEIQVA 575

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            R  +DM     V        +I   C  G    A      M ++GL P + +Y++I+H 
Sbjct: 576 ERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHS 635

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           L K+G    A  +  + ++ G +P    Y  L+ G C E D+EKA ++   ML       
Sbjct: 636 LSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEML------- 688

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVIN--GFCKMGRIEEALKV 301
                                            P+++  NT+IN  G+CK G + EA K+
Sbjct: 689 ----------------------------HNGINPNIVVYNTLINDYGYCKSGNLTEAFKL 720

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
            ++M++ K  +PD   +  +I G    G +++AL+L ++   Q+     +  +N+++   
Sbjct: 721 FDEMIS-KGISPDGYIYCILIDGCGKEGNLEKALSLFHEA--QQKSVGSLSAFNSLIDSF 777

Query: 362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
            +  +V EA+E+F+ M+   +  +  TY I+ID   ++  ++EA++ + D+   + I + 
Sbjct: 778 CKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNT 837

Query: 422 YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
             Y +++    + G   + +    ++   G+  + + Y V+    CK     EA ++L +
Sbjct: 838 LTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEGKSLEALKLLNK 897

Query: 482 MRKNGL 487
               G+
Sbjct: 898 SLVEGI 903



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 101/402 (25%), Positives = 192/402 (47%), Gaps = 11/402 (2%)

Query: 109 NLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKR 168
           NL+  L +   +   +++   M + K V + +   ++I + C+ G       V+  M K 
Sbjct: 212 NLMRDLLKANMMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEMEKE 271

Query: 169 GLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKA 228
              P+L +YN+ + GLC+ G    A ++ +  ++ G  P  HTY +LV+G C +   ++A
Sbjct: 272 -CKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEA 330

Query: 229 RKVLQFM----LSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNT 284
           + + + M    L+      T + + +++      N  E L +   M+    + +V+T N 
Sbjct: 331 KLIFESMPSSGLNPNRFTYTALIDGFIKE----GNIEEALRIKDEMITRGLKLNVVTYNA 386

Query: 285 VINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ 344
           +I G  K G + +A+ + N+M+      PD  T+  +I G L    + +A  LL + M  
Sbjct: 387 MIGGIAKAGEMAKAMSLFNEMLMAGI-EPDTWTYNLLIDGYLKSHDMAKACELLAE-MKA 444

Query: 345 RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 404
           R  +P   TY+ ++ GL     +++A EV + M+  GV  +   Y  +I    + ++ + 
Sbjct: 445 RKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEM 504

Query: 405 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
           A      ++    + D + Y  +I GLCR+ K+ EA   L ++ + G+ PN   Y   I+
Sbjct: 505 AIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFIN 564

Query: 465 GACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
              K    + A +  ++M  +G+ P+ V + IL K H + GN
Sbjct: 565 LYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGN 606



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 95/387 (24%), Positives = 181/387 (46%), Gaps = 12/387 (3%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C +    EA   F  M  +G +P++ +Y+ +IH   + G+   A  VF +    GV+P+ 
Sbjct: 602 CDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDV 661

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSL--CREGYVNE 122
             Y+ L+ G  +  D+E+A+    +L++ M     ++ N   +  L++    C+ G + E
Sbjct: 662 FLYNSLISGFCKEGDIEKAS----QLYDEMLHN-GINPNIVVYNTLINDYGYCKSGNLTE 716

Query: 123 VFRIAEDM-PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
            F++ ++M  +G S +    C  +ID   + G    A  + +  +++ +  SL ++NS++
Sbjct: 717 AFKLFDEMISKGISPDGYIYC-ILIDGCGKEGNLEKALSLFHEAQQKSVG-SLSAFNSLI 774

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
              CKHG  + A +L ++ +     P+  TY +L++       +E+A ++   M ++  +
Sbjct: 775 DSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNII 834

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
             T      L +   I N  +++++   M       D I    + + +CK G+  EALK+
Sbjct: 835 PNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEGKSLEALKL 894

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
           LN  +       D V F  +IF L    +I   L LL + M +   S    T N +L G 
Sbjct: 895 LNKSLVEGIKLEDDV-FDALIFHLCKEKQISTVLELLSE-MGKEELSLSSKTCNTLLLGF 952

Query: 362 FRLRRVEEAKEVFNCMLGIGVVADSTT 388
           ++    +EA +V   M  +G V  S +
Sbjct: 953 YKSGNEDEASKVLGVMQRLGWVPTSLS 979



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 78/305 (25%), Positives = 137/305 (44%), Gaps = 20/305 (6%)

Query: 210 HTYKVLVEGLCGESDLEKARKVLQFMLSKKD-----VDRTRIC------------NIYLR 252
           H+Y +L   LC    + +A  +L+ +L  +      +D    C            +I++ 
Sbjct: 121 HSYSILAIRLCNSGLIHQADNMLEKLLQTRKPPLEILDSLVRCYREFGGSNLTVFDIFID 180

Query: 253 ALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCA 312
              ++    E  +V +  +     P +I  N ++    K   +    KV   MV  K   
Sbjct: 181 KFRVLGFLNEASSVFIASISEGFFPTLICCNNLMRDLLKANMMGLFWKVYGSMVEAKI-V 239

Query: 313 PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKE 372
           PD  T+T +I     VG + +   +L ++  ++   P + TYNA + GL +   V+EA E
Sbjct: 240 PDVYTYTNVIKAHCKVGDVIKGKMVLSEM--EKECKPNLFTYNAFIGGLCQTGAVDEALE 297

Query: 373 VFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLC 432
           V   M+  G+  D  TY +++DG C+  +  EAK  ++ +       + + Y A+I G  
Sbjct: 298 VKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFI 357

Query: 433 RSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAV 492
           + G I EA+    E++  G+  N+V YN +I G  K     +A  +  EM   G+ PD  
Sbjct: 358 KEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGIEPDTW 417

Query: 493 TWRIL 497
           T+ +L
Sbjct: 418 TYNLL 422



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 137/322 (42%), Gaps = 45/322 (13%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLI--HGYCRTGEMDVAYKVFDEMRHCGVL 61
            C    + +A +L+ +M   G  PN+V Y TLI  +GYC++G +  A+K+FDEM   G+ 
Sbjct: 671 FCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINDYGYCKSGNLTEAFKLFDEMISKGIS 730

Query: 62  PNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNN-AAFANLVDSLCREGYV 120
           P+   Y +L+ G  +  ++E+A  L         E +  SV + +AF +L+DS C+ G V
Sbjct: 731 PDGYIYCILIDGCGKEGNLEKALSLF-------HEAQQKSVGSLSAFNSLIDSFCKHGKV 783

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS- 179
            E   + +DM   K          +ID+  ++     A ++   M  R + P+ ++Y S 
Sbjct: 784 IEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSL 843

Query: 180 -----------------------------IVHGL-----CKHGGCMRAYQLLEEGIQFGY 205
                                        I +G+     CK G  + A +LL + +  G 
Sbjct: 844 LLSYNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEGKSLEALKLLNKSLVEGI 903

Query: 206 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 265
              +  +  L+  LC E  +    ++L  M  ++    ++ CN  L       N  E   
Sbjct: 904 KLEDDVFDALIFHLCKEKQISTVLELLSEMGKEELSLSSKTCNTLLLGFYKSGNEDEASK 963

Query: 266 VLVFMLQTQCQPDVITLNTVIN 287
           VL  M +    P  ++L   I+
Sbjct: 964 VLGVMQRLGWVPTSLSLTDSIS 985



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 94/212 (44%), Gaps = 42/212 (19%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C   +V EA +LF DM  +   PN+V+YT LI  Y +   M+ A ++F +M    +
Sbjct: 774 IDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNI 833

Query: 61  LPNSLTYSVLV---------------------RGVL---------------RTRDVERAN 84
           +PN+LTY+ L+                     RG+                  + +E   
Sbjct: 834 IPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEGKSLEALK 893

Query: 85  VLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGH 144
           +L   L E +K E+D+      F  L+  LC+E  ++ V  +  +M + +       C  
Sbjct: 894 LLNKSLVEGIKLEDDV------FDALIFHLCKEKQISTVLELLSEMGKEELSLSSKTCNT 947

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVS 176
           ++    +SG    AS+V+ VM++ G  P+ +S
Sbjct: 948 LLLGFYKSGNEDEASKVLGVMQRLGWVPTSLS 979


>gi|115468576|ref|NP_001057887.1| Os06g0565000 [Oryza sativa Japonica Group]
 gi|113595927|dbj|BAF19801.1| Os06g0565000 [Oryza sativa Japonica Group]
 gi|125597608|gb|EAZ37388.1| hypothetical protein OsJ_21726 [Oryza sativa Japonica Group]
          Length = 687

 Score =  206 bits (524), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 136/506 (26%), Positives = 240/506 (47%), Gaps = 42/506 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    + EA  LF  MK  G +P+VV++ +LI GY + GE+D   ++ +EMR  G 
Sbjct: 195 IDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSGC 254

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             + +TY+ L+    +   +E A    +  +  MK                    REG +
Sbjct: 255 KADVVTYNALINCFCKFGRMETA----YGYFAAMK--------------------REGVM 290

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
             V   +                  +D+ C+ G    A ++   MR RG+  +  +Y  +
Sbjct: 291 ANVVTFST----------------FVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCL 334

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G CK G    A  LL+E ++ G   +  TY VLV+GLC E  + +A  VL+ M     
Sbjct: 335 IDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGV 394

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                +    +    + KN  + L +L  M     + D+     +I G C + +++EA  
Sbjct: 395 RANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKS 454

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +L  M       P+ + +TT++      G++ EA+ +L +++   G+ P ++TY A++ G
Sbjct: 455 LLTKMDESGL-EPNYIIYTTMMDACFKSGKVPEAIAMLQKIL-DSGFQPNVITYCALIDG 512

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L +   ++EA   FN M  +G+  +   Y  ++DGLC++  L+EA + ++++V      D
Sbjct: 513 LCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLD 572

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
             VY A++ G  + G +H+A     +++DSG+  ++ CY   I G C L+M  EA ++  
Sbjct: 573 KVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFS 632

Query: 481 EMRKNGLNPDAVTWRILDKLHGNRGN 506
           EM  +G+ PD   +  L   +   GN
Sbjct: 633 EMIGHGIAPDRAVYNCLISKYQKLGN 658



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 113/419 (26%), Positives = 185/419 (44%), Gaps = 46/419 (10%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C    V EA KLF  M+ RG   N  +YT LI G C+ G +D A  + DEM   GV
Sbjct: 300 VDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGV 359

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             N +TY+VLV G+ + R V  A  ++     RM E+  +  N   +  L+         
Sbjct: 360 PLNVVTYTVLVDGLCKERKVAEAEDVL-----RMMEKAGVRANELLYTTLIHGHFMNKNS 414

Query: 121 NEVFRIAEDMPQGKSVNEEFAC-GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
            +   +  +M + K +  + +  G +I  LC   +   A  ++  M + GL P+ + Y +
Sbjct: 415 EKALGLLSEM-KNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTT 473

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++    K G    A  +L++ +  G+ P+  TY  L++GLC    +++A      M    
Sbjct: 474 MMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKM---- 529

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                       R L L                    P+V     +++G CK G + EA+
Sbjct: 530 ------------RDLGL-------------------DPNVQAYTALVDGLCKNGCLNEAV 558

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           ++ N+MV  K  + D V +T ++ G L  G + +A  L  + M   G    +  Y   + 
Sbjct: 559 QLFNEMV-HKGMSLDKVVYTALLDGYLKQGNLHDAFALKAK-MIDSGLQLDLFCYTCFIS 616

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI--VWPS 416
           G   L  + EA+EVF+ M+G G+  D   Y  +I    +   L+EA    D++  V PS
Sbjct: 617 GFCNLNMMPEAREVFSEMIGHGIAPDRAVYNCLISKYQKLGNLEEAISLQDEMERVLPS 675



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 82/160 (51%), Gaps = 4/160 (2%)

Query: 338 LYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLC 397
           L++ +P    +P + T+N V+  L +   + EA+ +F+ M  +G + D  T+  +IDG  
Sbjct: 179 LFEQLP----APNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYG 234

Query: 398 ESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIV 457
           +  +LDE ++  +++       D   Y A+I   C+ G++  A  +   +   GV  N+V
Sbjct: 235 KCGELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVV 294

Query: 458 CYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            ++  +D  CK  + REA ++  +MR  G+  +  T+  L
Sbjct: 295 TFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCL 334


>gi|414875530|tpg|DAA52661.1| TPA: hypothetical protein ZEAMMB73_467633 [Zea mays]
          Length = 987

 Score =  206 bits (524), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 140/528 (26%), Positives = 249/528 (47%), Gaps = 46/528 (8%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C    +  AH+ F  ++  G   +  +   L+ GYCRT ++  A  +   M   G   N 
Sbjct: 190 CKKGSLAIAHRYFCLLRESGMQMDTYTCNALLLGYCRTSDLRKACWLLMMMPLMGCRRNE 249

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
            +Y++L++G+   R V  A VL+F     M  ++  S+N   +  L+  LC+EG +++  
Sbjct: 250 YSYTILIQGLYEARCVREALVLVF-----MMVQDGCSLNLHMYTLLIKGLCKEGRIHDAR 304

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
            + ++MP    V   +    MID  C+SGR   A  +  +M + G  P   +YNS+++GL
Sbjct: 305 GLLDEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKALMEQNGCNPDDWTYNSLIYGL 364

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS---KKDV 241
           C  G    A +LL   I  G+ P+  T+  L+ G C    ++ A +V   M+S   K D+
Sbjct: 365 CG-GKLDEAEELLNGAIARGFTPTVITFTNLINGYCKAERIDDALRVKSNMISSNCKLDL 423

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
               +    L   C +K   E LN    M      P+V+   ++I+G+CK+G +  AL+V
Sbjct: 424 QAYGVLINVLIKKCRLKEAKETLNE---MFANGLAPNVVIYTSIIDGYCKVGMVGAALEV 480

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
              ++  + C P+A T+ ++I+GL+   ++ +A+ L+ + M + G +PG++ Y  +++G 
Sbjct: 481 FK-LMEHEGCHPNAWTYGSLIYGLIQDKKLHKAMALITK-MQEDGITPGVIAYTTLIQGQ 538

Query: 362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRF-------WDDIVW 414
            +    + A  +F  M   G+  D   Y ++ D LC+S + +EA  F          + +
Sbjct: 539 CKKHEFDNAFRLFEMMEKNGLTPDEQAYNVLTDALCKSGRAEEAYSFLVRKGVVLTKVTY 598

Query: 415 PSNIH-------------------------DNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449
            S +                          D Y Y+ +++ LC+  K++EA+  L ++  
Sbjct: 599 TSLVDGFSKAGNTDFAAVLIEKMVNEGCKADLYTYSVLLQALCKQKKLNEALSILDQMTV 658

Query: 450 SGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           SGV  NIV Y ++I    K      A  +  EM  +G  P A T+ + 
Sbjct: 659 SGVKCNIVAYTIIISEMIKEGKHDHAKSLFNEMISSGHKPSATTYTVF 706



 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 133/511 (26%), Positives = 239/511 (46%), Gaps = 36/511 (7%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           R+ EA +   +M + G  PNVV YT++I GYC+ G +  A +VF  M H G  PN+ TY 
Sbjct: 438 RLKEAKETLNEMFANGLAPNVVIYTSIIDGYCKVGMVGAALEVFKLMEHEGCHPNAWTYG 497

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
            L+ G+++ + + +A  L+ K+     +E+ ++    A+  L+   C++   +  FR+ E
Sbjct: 498 SLIYGLIQDKKLHKAMALITKM-----QEDGITPGVIAYTTLIQGQCKKHEFDNAFRLFE 552

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
            M +     +E A   + D+LC+SGR   A      + ++G+  + V+Y S+V G  K G
Sbjct: 553 MMEKNGLTPDEQAYNVLTDALCKSGR---AEEAYSFLVRKGVVLTKVTYTSLVDGFSKAG 609

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
               A  L+E+ +  G     +TY VL++ LC +  L +A  +L  M     V   + CN
Sbjct: 610 NTDFAAVLIEKMVNEGCKADLYTYSVLLQALCKQKKLNEALSILDQM----TVSGVK-CN 664

Query: 249 IYLRALC---LIKNPTELLNVLVF--MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
           I    +    +IK         +F  M+ +  +P   T    I+ +CK+G+IEEA  ++ 
Sbjct: 665 IVAYTIIISEMIKEGKHDHAKSLFNEMISSGHKPSATTYTVFISSYCKIGQIEEAEHLIG 724

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR---- 359
           +M       PD VT+   I G  ++G +  A + L + M      P   TY  +L+    
Sbjct: 725 EMERDGV-TPDVVTYHIFINGCGHMGYMDRAFSTLKR-MVDASCEPNCWTYWLLLKHFLK 782

Query: 360 ------------GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKR 407
                       G++    +    ++   M+  G+     TY+ +I G C++ +L+EA  
Sbjct: 783 MSLINAHYIDTSGMWNWIELNTVWQLLERMMKHGLNPTVVTYSSIIAGFCKATRLEEACV 842

Query: 408 FWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGAC 467
             D ++  +   +  +Y  +IK  C      + V F+ ++++ G  P +  Y+ +I G C
Sbjct: 843 LLDHMLGKAISPNEEIYTMLIKCCCDIKLFGKDVSFVTDMIEFGFQPQLESYHYLIVGLC 902

Query: 468 KLSMKREAYQILREMRKNGLNPDAVTWRILD 498
                  A  +  ++     N + V W+IL+
Sbjct: 903 DEGDYDRAKSLFCDLLGMDYNHNEVAWKILN 933



 Score =  175 bits (443), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 126/496 (25%), Positives = 215/496 (43%), Gaps = 11/496 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R+ +A  L  +M  RG VP+V +Y  +I GYC++G M  A  +   M   G  P+
Sbjct: 294 LCKEGRIHDARGLLDEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKALMEQNGCNPD 353

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             TY+ L+ G+   +  E   +L   +          +     F NL++  C+   +++ 
Sbjct: 354 DWTYNSLIYGLCGGKLDEAEELLNGAI------ARGFTPTVITFTNLINGYCKAERIDDA 407

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            R+  +M       +  A G +I+ L +  R   A   +  M   GL P++V Y SI+ G
Sbjct: 408 LRVKSNMISSNCKLDLQAYGVLINVLIKKCRLKEAKETLNEMFANGLAPNVVIYTSIIDG 467

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK G    A ++ +     G  P+  TY  L+ GL  +  L KA  ++  M        
Sbjct: 468 YCKVGMVGAALEVFKLMEHEGCHPNAWTYGSLIYGLIQDKKLHKAMALITKMQEDGITPG 527

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                  ++  C          +   M +    PD    N + +  CK GR EEA   L 
Sbjct: 528 VIAYTTLIQGQCKKHEFDNAFRLFEMMEKNGLTPDEQAYNVLTDALCKSGRAEEAYSFL- 586

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
                K      VT+T+++ G    G    A  +L + M   G    + TY+ +L+ L +
Sbjct: 587 ---VRKGVVLTKVTYTSLVDGFSKAGNTDFA-AVLIEKMVNEGCKADLYTYSVLLQALCK 642

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
            +++ EA  + + M   GV  +   Y I+I  + +  + D AK  +++++   +      
Sbjct: 643 QKKLNEALSILDQMTVSGVKCNIVAYTIIISEMIKEGKHDHAKSLFNEMISSGHKPSATT 702

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y   I   C+ G+I EA H + E+   GVTP++V Y++ I+G   +     A+  L+ M 
Sbjct: 703 YTVFISSYCKIGQIEEAEHLIGEMERDGVTPDVVTYHIFINGCGHMGYMDRAFSTLKRMV 762

Query: 484 KNGLNPDAVTWRILDK 499
                P+  T+ +L K
Sbjct: 763 DASCEPNCWTYWLLLK 778



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 123/498 (24%), Positives = 217/498 (43%), Gaps = 15/498 (3%)

Query: 6   GLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDV--AYKVFDEMRHCG---V 60
           G      +H     + +R   P       L    C     DV  A      +R  G   +
Sbjct: 81  GFRHTAASHAALLQLLARRRAPANYDKLVLSMISCSGTAEDVREAVDAIQAIRRVGGKRL 140

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           + +   Y++ +R +LR    E     M KL+  + +E  L  +   +  ++ + C++G +
Sbjct: 141 VLSPKCYNLALRSLLRFDMTE----YMGKLYSHLVQE-GLLPDTVTYNTMIMAYCKKGSL 195

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
               R    + +     + + C  ++   CR+     A  ++ +M   G   +  SY  +
Sbjct: 196 AIAHRYFCLLRESGMQMDTYTCNALLLGYCRTSDLRKACWLLMMMPLMGCRRNEYSYTIL 255

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GL +      A  L+   +Q G   + H Y +L++GLC E  +  AR +L  M  +  
Sbjct: 256 IQGLYEARCVREALVLVFMMVQDGCSLNLHMYTLLIKGLCKEGRIHDARGLLDEMPLRGV 315

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           V      N  +   C      + L +   M Q  C PD  T N++I G C  G+++EA +
Sbjct: 316 VPSVWTYNAMIDGYCKSGRMKDALGIKALMEQNGCNPDDWTYNSLIYGLCG-GKLDEAEE 374

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +LN  +A  F  P  +TFT +I G     RI +AL +    M        +  Y  ++  
Sbjct: 375 LLNGAIARGF-TPTVITFTNLINGYCKAERIDDALRVKSN-MISSNCKLDLQAYGVLINV 432

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L +  R++EAKE  N M   G+  +   Y  +IDG C+   +  A   +  ++     H 
Sbjct: 433 LIKKCRLKEAKETLNEMFANGLAPNVVIYTSIIDGYCKVGMVGAALEVF-KLMEHEGCHP 491

Query: 421 N-YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           N + Y ++I GL +  K+H+A+  + ++ + G+TP ++ Y  +I G CK      A+++ 
Sbjct: 492 NAWTYGSLIYGLIQDKKLHKAMALITKMQEDGITPGVIAYTTLIQGQCKKHEFDNAFRLF 551

Query: 480 REMRKNGLNPDAVTWRIL 497
             M KNGL PD   + +L
Sbjct: 552 EMMEKNGLTPDEQAYNVL 569



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 117/512 (22%), Positives = 225/512 (43%), Gaps = 24/512 (4%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C +  VG A ++F  M+  G  PN  +Y +LI+G  +  ++  A  +  +M+  G+
Sbjct: 465 IDGYCKVGMVGAALEVFKLMEHEGCHPNAWTYGSLIYGLIQDKKLHKAMALITKMQEDGI 524

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P  + Y+ L++G  +  + + A    F+L+E M E+  L+ +  A+  L D+LC+ G  
Sbjct: 525 TPGVIAYTTLIQGQCKKHEFDNA----FRLFEMM-EKNGLTPDEQAYNVLTDALCKSGRA 579

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E +     + +   V  +     ++D   ++G    A+ ++  M   G    L +Y+ +
Sbjct: 580 EEAYSF---LVRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADLYTYSVL 636

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +  LCK      A  +L++    G   +   Y +++  +  E   + A+ +   M+S   
Sbjct: 637 LQALCKQKKLNEALSILDQMTVSGVKCNIVAYTIIISEMIKEGKHDHAKSLFNEMISSGH 696

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                   +++ + C I    E  +++  M +    PDV+T +  ING   MG ++ A  
Sbjct: 697 KPSATTYTVFISSYCKIGQIEEAEHLIGEMERDGVTPDVVTYHIFINGCGHMGYMDRAFS 756

Query: 301 VLNDMVAGKFCAPDAVTFTTII-----FGLLNVGRIQEA-------LNLLYQV---MPQR 345
            L  MV    C P+  T+  ++       L+N   I  +       LN ++Q+   M + 
Sbjct: 757 TLKRMVDAS-CEPNCWTYWLLLKHFLKMSLINAHYIDTSGMWNWIELNTVWQLLERMMKH 815

Query: 346 GYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA 405
           G +P +VTY++++ G  +  R+EEA  + + MLG  +  +   Y ++I   C+     + 
Sbjct: 816 GLNPTVVTYSSIIAGFCKATRLEEACVLLDHMLGKAISPNEEIYTMLIKCCCDIKLFGKD 875

Query: 406 KRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDG 465
             F  D++          Y  +I GLC  G    A     +L+      N V + ++ DG
Sbjct: 876 VSFVTDMIEFGFQPQLESYHYLIVGLCDEGDYDRAKSLFCDLLGMDYNHNEVAWKILNDG 935

Query: 466 ACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
             K        Q+L  M       D+ ++ +L
Sbjct: 936 LLKAGHVDFCSQLLAAMDNRHCRIDSESYSML 967



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 71/159 (44%), Gaps = 7/159 (4%)

Query: 354 YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413
           YN  LR L R    E   ++++ ++  G++ D+ TY  +I   C+   L  A R++  + 
Sbjct: 147 YNLALRSLLRFDMTEYMGKLYSHLVQEGLLPDTVTYNTMIMAYCKKGSLAIAHRYFCLLR 206

Query: 414 WPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKR 473
                 D Y   A++ G CR+  + +A   L  +   G   N   Y ++I G  +    R
Sbjct: 207 ESGMQMDTYTCNALLLGYCRTSDLRKACWLLMMMPLMGCRRNEYSYTILIQGLYEARCVR 266

Query: 474 EAYQILREMRKNGLNPDAVTWRILDK-------LHGNRG 505
           EA  ++  M ++G + +   + +L K       +H  RG
Sbjct: 267 EALVLVFMMVQDGCSLNLHMYTLLIKGLCKEGRIHDARG 305


>gi|356530056|ref|XP_003533600.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 694

 Score =  206 bits (524), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 131/490 (26%), Positives = 243/490 (49%), Gaps = 13/490 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +  L  +     A  L   M+ +G  P++V+ + LI+ +C  G+M  ++ V  ++   G 
Sbjct: 139 LGSLVKMKHFPTAISLSKQMEVKGIEPDLVTLSILINCFCHLGQMAFSFSVLGKILKLGY 198

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN++  + L++G+    +V+++     K+       +   +N  ++  L++ LC+ G  
Sbjct: 199 QPNTIILTTLMKGLCLKGEVKKSLHFHDKVVA-----QGFQMNQVSYGTLLNGLCKIGET 253

Query: 121 N---EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
               ++ R+ ED      V        +ID LC+    + A      M  RG+ P +++Y
Sbjct: 254 RCAIKLLRMIEDRSTRPDV---VMYNTIIDGLCKDKLVNEAYDFYTEMNSRGIFPDVITY 310

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
           ++++ G C  G  M A+ LL E       P  +TY +L++ LC E  L++A+ +L  M  
Sbjct: 311 STLICGFCLAGQLMGAFSLLNEMTLKNINPDVYTYTILIDALCKEGKLKEAKNLLGVMTK 370

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
           +         +  +   CL+        +   M+QT+  P V + N +ING CK   ++E
Sbjct: 371 EGVKPNVVTYSTLMDGYCLVGEVHNAKQIFHAMVQTEVNPSVCSYNIMINGLCKGKSVDE 430

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           A+ +L +M+  K   P+ VT+ ++I GL   GRI  AL+L+ + +  RG    ++TY ++
Sbjct: 431 AMNLLREMLH-KNVVPNTVTYNSLIDGLCKSGRITSALDLMKE-LHHRGQPADVITYTSL 488

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 417
           L GL + + +++A  +F  M   G+  +  TY  +IDGLC+  +L  A++ +  I+    
Sbjct: 489 LDGLCKNQNLDKAIALFMKMKERGIQPNKYTYTALIDGLCKGARLKNAQKLFQHILVKGC 548

Query: 418 IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQ 477
             D Y Y  MI GLC+ G + EA+    ++ D+G  P+ V + ++I    +     +A +
Sbjct: 549 CIDVYTYNVMIGGLCKEGMLDEALAMKSKMEDNGCIPDAVTFEIIIRSLFEKDENDKAEK 608

Query: 478 ILREMRKNGL 487
           +L EM   GL
Sbjct: 609 LLHEMIAKGL 618



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 123/490 (25%), Positives = 224/490 (45%), Gaps = 23/490 (4%)

Query: 24  GHVPNVVSYTTLIHGYCRTGEMDVAYKVFD-EMRHCGVLPNSLTYSVLVRGVL------- 75
           G+ PN ++ TTL+ G  R   + +   + D   R    L +SL++S+             
Sbjct: 41  GYQPNSITLTTLMKGETRCA-IKLPRMIEDRSTRPLMWLSSSLSHSIPNFPPFLPNPTFP 99

Query: 76  --------RTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIA 127
                      DV    V  F     M+    +      F  ++ SL +  +      ++
Sbjct: 100 FYFHSQPPSIHDVVHDAVSQFNGMLLMRNTPSI----IEFGKILGSLVKMKHFPTAISLS 155

Query: 128 EDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKH 187
           + M       +      +I+  C  G+   +  V+  + K G  P+ +   +++ GLC  
Sbjct: 156 KQMEVKGIEPDLVTLSILINCFCHLGQMAFSFSVLGKILKLGYQPNTIILTTLMKGLCLK 215

Query: 188 GGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC 247
           G   ++    ++ +  G+  ++ +Y  L+ GLC   +   A K+L+ +  +       + 
Sbjct: 216 GEVKKSLHFHDKVVAQGFQMNQVSYGTLLNGLCKIGETRCAIKLLRMIEDRSTRPDVVMY 275

Query: 248 NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA 307
           N  +  LC  K   E  +    M      PDVIT +T+I GFC  G++  A  +LN+M  
Sbjct: 276 NTIIDGLCKDKLVNEAYDFYTEMNSRGIFPDVITYSTLICGFCLAGQLMGAFSLLNEMTL 335

Query: 308 GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRV 367
            K   PD  T+T +I  L   G+++EA NLL  VM + G  P +VTY+ ++ G   +  V
Sbjct: 336 -KNINPDVYTYTILIDALCKEGKLKEAKNLL-GVMTKEGVKPNVVTYSTLMDGYCLVGEV 393

Query: 368 EEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAM 427
             AK++F+ M+   V     +Y I+I+GLC+   +DEA     +++  + + +   Y ++
Sbjct: 394 HNAKQIFHAMVQTEVNPSVCSYNIMINGLCKGKSVDEAMNLLREMLHKNVVPNTVTYNSL 453

Query: 428 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
           I GLC+SG+I  A+  + EL   G   +++ Y  ++DG CK     +A  +  +M++ G+
Sbjct: 454 IDGLCKSGRITSALDLMKELHHRGQPADVITYTSLLDGLCKNQNLDKAIALFMKMKERGI 513

Query: 488 NPDAVTWRIL 497
            P+  T+  L
Sbjct: 514 QPNKYTYTAL 523



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 104/383 (27%), Positives = 184/383 (48%), Gaps = 10/383 (2%)

Query: 4   LCGLSRVGE---AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           L GL ++GE   A KL   ++ R   P+VV Y T+I G C+   ++ AY  + EM   G+
Sbjct: 244 LNGLCKIGETRCAIKLLRMIEDRSTRPDVVMYNTIIDGLCKDKLVNEAYDFYTEMNSRGI 303

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TYS L+ G      +  A    F L   M   ++++ +   +  L+D+LC+EG +
Sbjct: 304 FPDVITYSTLICGFCLAGQLMGA----FSLLNEM-TLKNINPDVYTYTILIDALCKEGKL 358

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E   +   M +            ++D  C  G  H A ++ + M +  + PS+ SYN +
Sbjct: 359 KEAKNLLGVMTKEGVKPNVVTYSTLMDGYCLVGEVHNAKQIFHAMVQTEVNPSVCSYNIM 418

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++GLCK      A  LL E +    +P+  TY  L++GLC    +  A  +++ +  +  
Sbjct: 419 INGLCKGKSVDEAMNLLREMLHKNVVPNTVTYNSLIDGLCKSGRITSALDLMKELHHRGQ 478

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                     L  LC  +N  + + + + M +   QP+  T   +I+G CK  R++ A K
Sbjct: 479 PADVITYTSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYTYTALIDGLCKGARLKNAQK 538

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +   ++  K C  D  T+  +I GL   G + EAL +  + M   G  P  VT+  ++R 
Sbjct: 539 LFQHILV-KGCCIDVYTYNVMIGGLCKEGMLDEALAMKSK-MEDNGCIPDAVTFEIIIRS 596

Query: 361 LFRLRRVEEAKEVFNCMLGIGVV 383
           LF     ++A+++ + M+  G++
Sbjct: 597 LFEKDENDKAEKLLHEMIAKGLL 619



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 112/419 (26%), Positives = 209/419 (49%), Gaps = 14/419 (3%)

Query: 6   GLSRVGEAHK-LFFDMK--SRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           GL   GE  K L F  K  ++G   N VSY TL++G C+ GE   A K+   +      P
Sbjct: 211 GLCLKGEVKKSLHFHDKVVAQGFQMNQVSYGTLLNGLCKIGETRCAIKLLRMIEDRSTRP 270

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           + + Y+ ++ G+ + + V  A    +  +  M     +  +   ++ L+   C  G +  
Sbjct: 271 DVVMYNTIIDGLCKDKLVNEA----YDFYTEM-NSRGIFPDVITYSTLICGFCLAGQLMG 325

Query: 123 VFRIAEDMPQGKSVNEE-FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
            F +  +M   K++N + +    +ID+LC+ G+   A  ++ VM K G+ P++V+Y++++
Sbjct: 326 AFSLLNEMTL-KNINPDVYTYTILIDALCKEGKLKEAKNLLGVMTKEGVKPNVVTYSTLM 384

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
            G C  G    A Q+    +Q    PS  +Y +++ GLC    +++A  +L+ ML K  V
Sbjct: 385 DGYCLVGEVHNAKQIFHAMVQTEVNPSVCSYNIMINGLCKGKSVDEAMNLLREMLHKNVV 444

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQP-DVITLNTVINGFCKMGRIEEALK 300
             T   N  +  LC     T  L+ L+  L  + QP DVIT  ++++G CK   +++A+ 
Sbjct: 445 PNTVTYNSLIDGLCKSGRITSALD-LMKELHHRGQPADVITYTSLLDGLCKNQNLDKAIA 503

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +   M   +   P+  T+T +I GL    R++ A  L   ++  +G    + TYN ++ G
Sbjct: 504 LFMKM-KERGIQPNKYTYTALIDGLCKGARLKNAQKLFQHIL-VKGCCIDVYTYNVMIGG 561

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
           L +   ++EA  + + M   G + D+ T+ I+I  L E ++ D+A++   +++    +H
Sbjct: 562 LCKEGMLDEALAMKSKMEDNGCIPDAVTFEIIIRSLFEKDENDKAEKLLHEMIAKGLLH 620


>gi|380875521|gb|AFF27500.1| PPR domain-containing protein [Oryza sativa Indica Group]
          Length = 742

 Score =  206 bits (524), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 133/491 (27%), Positives = 248/491 (50%), Gaps = 9/491 (1%)

Query: 8   SRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTY 67
           S++     ++ +M +RG  P+VV++ TL+   CR  ++  A  + +EM   GV P+  T+
Sbjct: 160 SKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTF 219

Query: 68  SVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF-RI 126
           + L++G +    +E A  +  ++ E       ++VN      L++  C+ G V +    I
Sbjct: 220 TTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNV-----LINGYCKLGRVEDALGYI 274

Query: 127 AEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK 186
            +++  G    ++      ++ LC++     A +V+ VM + G  P + +YN +V+ LCK
Sbjct: 275 QQEIADGFE-PDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCK 333

Query: 187 HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRI 246
           +G    A  +L + +  G LP   T+  L+  LC  + LE+A  + + +  K        
Sbjct: 334 NGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYT 393

Query: 247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV 306
            NI + ALC + +P   L +   M  + C PD +T NT+I+  C +G++ +AL +L DM 
Sbjct: 394 FNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDME 453

Query: 307 AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 366
           +   C    +T+ TII GL    RI+EA  +  Q M  +G S   +T+N ++ GL + ++
Sbjct: 454 STG-CPRSTITYNTIIDGLCKKMRIEEAEEVFDQ-MDLQGISRNAITFNTLIDGLCKDKK 511

Query: 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAA 426
           +++A  + N M+  G+  ++ TY  ++   C+   + +A    + +       D   Y  
Sbjct: 512 IDDAFGLINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGT 571

Query: 427 MIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG 486
           +I GLC++G+   A+  L  +   G+ P    YN V+    + +  R+A  + REM + G
Sbjct: 572 LINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVG 631

Query: 487 LNPDAVTWRIL 497
             PDA+T++I+
Sbjct: 632 EPPDALTYKIV 642



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 132/509 (25%), Positives = 235/509 (46%), Gaps = 10/509 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M  LC   +V  A  +  +M SRG  P+  ++TTL+ G+   G ++ A +V   M   G 
Sbjct: 188 MKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGC 247

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEED-LSVNNAAFANLVDSLCREGY 119
               +T +VL+ G  +   VE A      L    +E  D    +   +   V+ LC+  +
Sbjct: 248 SATKVTVNVLINGYCKLGRVEDA------LGYIQQEIADGFEPDQITYNTFVNGLCQNDH 301

Query: 120 VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           V    ++ + M Q     + F    +++ LC++G+   A  ++  M  RG  P + ++N+
Sbjct: 302 VGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNT 361

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++  LC       A  L  +    G  P  +T+ +L+  LC   D   A ++ + M +  
Sbjct: 362 LIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSG 421

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                   N  +  LC +    + L++L  M  T C    IT NT+I+G CK  RIEEA 
Sbjct: 422 CTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAE 481

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           +V + M   +  + +A+TF T+I GL    +I +A  L+ Q++ + G  P  +TYN++L 
Sbjct: 482 EVFDQMDL-QGISRNAITFNTLIDGLCKDKKIDDAFGLINQMISE-GLQPNNITYNSILT 539

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
              +   +++A ++   M   G   D  TY  +I+GLC++ +   A +    +       
Sbjct: 540 HYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRP 599

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMK-REAYQI 478
               Y  +++ L R   I +A+    E+ + G  P+ + Y +V  G C+     +EA+  
Sbjct: 600 TPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDF 659

Query: 479 LREMRKNGLNPDAVTWRILDKLHGNRGND 507
           + EM   G  P+  ++R+L +   N G D
Sbjct: 660 MLEMVDKGFIPEFSSFRMLAEGLLNLGMD 688



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 106/358 (29%), Positives = 168/358 (46%), Gaps = 38/358 (10%)

Query: 144 HMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQF 203
           H+++ L    +      V   M  RG+ P +V++N+++  LC+      A  +LEE    
Sbjct: 151 HLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSR 210

Query: 204 GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTEL 263
           G  P E T+  L++G   E  +E A                                   
Sbjct: 211 GVAPDETTFTTLMQGFVEEGSIEAA----------------------------------- 235

Query: 264 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF 323
           L V   ML+  C    +T+N +ING+CK+GR+E+AL  +   +A  F  PD +T+ T + 
Sbjct: 236 LRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGF-EPDQITYNTFVN 294

Query: 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 383
           GL     +  AL ++  VM Q G+ P + TYN V+  L +  ++EEAK + N M+  G +
Sbjct: 295 GLCQNDHVGHALKVM-DVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCL 353

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
            D TT+  +I  LC  N+L+EA      +       D Y +  +I  LC+ G  H A+  
Sbjct: 354 PDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRL 413

Query: 444 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWR-ILDKL 500
             E+ +SG TP+ V YN +ID  C L    +A  +L++M   G     +T+  I+D L
Sbjct: 414 FEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGL 471



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 88/298 (29%), Positives = 145/298 (48%), Gaps = 6/298 (2%)

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
           GIQ   +   H   VLVEG    S ++    V   M ++         N  ++ALC    
Sbjct: 141 GIQADTVVYNHLLNVLVEG----SKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQ 196

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
               + +L  M      PD  T  T++ GF + G IE AL+V   M+    C+   VT  
Sbjct: 197 VRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLE-MGCSATKVTVN 255

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
            +I G   +GR+++AL  + Q +   G+ P  +TYN  + GL +   V  A +V + M+ 
Sbjct: 256 VLINGYCKLGRVEDALGYIQQEIAD-GFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQ 314

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
            G   D  TY IV++ LC++ QL+EAK   + +V    + D   +  +I  LC   ++ E
Sbjct: 315 EGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEE 374

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           A+    ++   GV+P++  +N++I+  CK+     A ++  EM+ +G  PD VT+  L
Sbjct: 375 ALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTL 432



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 101/379 (26%), Positives = 176/379 (46%), Gaps = 12/379 (3%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC  +R+ EA  L   +  +G  P+V ++  LI+  C+ G+  +A ++F+EM++ G  P+
Sbjct: 366 LCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPD 425

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY+ L+  +     + +A  L+  +     E      +   +  ++D LC++  + E 
Sbjct: 426 EVTYNTLIDNLCSLGKLGKALDLLKDM-----ESTGCPRSTITYNTIIDGLCKKMRIEEA 480

Query: 124 FRIAEDMP-QGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
             + + M  QG S N       +ID LC+  +   A  ++  M   GL P+ ++YNSI+ 
Sbjct: 481 EEVFDQMDLQGISRNA-ITFNTLIDGLCKDKKIDDAFGLINQMISEGLQPNNITYNSILT 539

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
             CK G   +A  +LE     G+     TY  L+ GLC     + A KVL+ M  K    
Sbjct: 540 HYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRP 599

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK-MGRIEEALKV 301
             +  N  L++L    N  + L++   M +    PD +T   V  G C+  G I+EA   
Sbjct: 600 TPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDF 659

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
           + +MV   F  P+  +F  +  GLLN+G     +  +  +M +       V+    +RG 
Sbjct: 660 MLEMVDKGFI-PEFSSFRMLAEGLLNLGMDDYFIRAIEIIMEKVDLRESDVS---AIRGY 715

Query: 362 FRLRRVEEAKEVFNCMLGI 380
            ++R+  +A   F   L I
Sbjct: 716 LKIRKFYDALATFGRFLEI 734



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 74/158 (46%)

Query: 337 LLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 396
           +L Q+ P  G     V YN +L  L    +++  + V++ M   G+  D  T+  ++  L
Sbjct: 132 ILNQLQPLFGIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKAL 191

Query: 397 CESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNI 456
           C ++Q+  A    +++       D   +  +++G    G I  A+     +++ G +   
Sbjct: 192 CRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATK 251

Query: 457 VCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
           V  NV+I+G CKL    +A   +++   +G  PD +T+
Sbjct: 252 VTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITY 289


>gi|224123314|ref|XP_002319048.1| predicted protein [Populus trichocarpa]
 gi|222857424|gb|EEE94971.1| predicted protein [Populus trichocarpa]
          Length = 497

 Score =  206 bits (524), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 135/489 (27%), Positives = 230/489 (47%), Gaps = 42/489 (8%)

Query: 13  AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVR 72
           A  +  +M   G  PN V+++TL++G     ++  A K+FDEM   G  P+ +TYS ++ 
Sbjct: 31  AFSVLGNMFKLGLQPNHVTFSTLLNGLSSKAKIIDAVKLFDEMVKMGYEPDVITYSTIIN 90

Query: 73  GVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQ 132
           G+ +      A  L+ K+     EE+    N   ++ ++DSLC++  + E      +M  
Sbjct: 91  GLCKMGSTTMAIQLLKKM-----EEKGCKPNVVVYSTIIDSLCKDKLITEAMEFLSEMVN 145

Query: 133 GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMR 192
                       ++   C  GR++ A+ +   M +R + P  V++N +V GL K G  + 
Sbjct: 146 RGISPNVVTYSSILHGFCNLGRSNEATSLFKQMVERNVMPDTVTFNILVDGLSKEGMILE 205

Query: 193 AYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLR 252
           A  + E  I+ G  P+ +TY  L++G C +S +++A+K+   M+ K              
Sbjct: 206 AQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKG------------- 252

Query: 253 ALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCA 312
                                 C P V + N +I G CK GRI+EA  +L +M + K   
Sbjct: 253 ----------------------CAPSVRSYNILIKGHCKSGRIDEAKGLLAEM-SHKALT 289

Query: 313 PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKE 372
           PD VT++T++ G    GR Q+A  LL + M   G  P ++TY+ VL GL +   ++EA E
Sbjct: 290 PDTVTYSTLMKGFCQDGRPQDAQKLLEE-MRSYGLLPDLMTYSIVLDGLCKQGHLDEAFE 348

Query: 373 VFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLC 432
           +   M    +  +   Y I+I G+C   +L+ A+  + ++       D   Y  MI GL 
Sbjct: 349 LLKAMQESKIEPNIFIYTILIQGMCNFGKLEAARELFSNLFVKGIQPDVVTYTVMISGLL 408

Query: 433 RSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAV 492
           + G  +EA     ++   G  PN   YNV+I G  +      A +++ EM   G + D+ 
Sbjct: 409 KGGLSNEACELFRDMAVHGCLPNSCTYNVIIQGFLRNGDTSNAGRLIEEMVGRGFSADSS 468

Query: 493 TWRILDKLH 501
           T+++L  L 
Sbjct: 469 TFQMLSDLE 477



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 107/355 (30%), Positives = 194/355 (54%), Gaps = 4/355 (1%)

Query: 145 MIDSLCRSGRNHG--ASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQ 202
           +I+  C S  +H   A  V+  M K GL P+ V+++++++GL      + A +L +E ++
Sbjct: 16  LINCFCHSNHDHFHFAFSVLGNMFKLGLQPNHVTFSTLLNGLSSKAKIIDAVKLFDEMVK 75

Query: 203 FGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTE 262
            GY P   TY  ++ GLC       A ++L+ M  K       + +  + +LC  K  TE
Sbjct: 76  MGYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTIIDSLCKDKLITE 135

Query: 263 LLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTII 322
            +  L  M+     P+V+T +++++GFC +GR  EA  +   MV  +   PD VTF  ++
Sbjct: 136 AMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNEATSLFKQMVE-RNVMPDTVTFNILV 194

Query: 323 FGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGV 382
            GL   G I EA   +++ M ++G  P + TYNA++ G     +++EA+++FN M+  G 
Sbjct: 195 DGLSKEGMILEA-QCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGC 253

Query: 383 VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVH 442
                +Y I+I G C+S ++DEAK    ++   +   D   Y+ ++KG C+ G+  +A  
Sbjct: 254 APSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQK 313

Query: 443 FLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            L E+   G+ P+++ Y++V+DG CK     EA+++L+ M+++ + P+   + IL
Sbjct: 314 LLEEMRSYGLLPDLMTYSIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIYTIL 368



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 104/413 (25%), Positives = 204/413 (49%), Gaps = 7/413 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ L   +++ +A KLF +M   G+ P+V++Y+T+I+G C+ G   +A ++  +M   G 
Sbjct: 54  LNGLSSKAKIIDAVKLFDEMVKMGYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGC 113

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN + YS ++  + + + +  A   + ++  R      +S N   +++++   C  G  
Sbjct: 114 KPNVVVYSTIIDSLCKDKLITEAMEFLSEMVNR-----GISPNVVTYSSILHGFCNLGRS 168

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           NE   + + M +   + +      ++D L + G    A  V   M ++G+ P++ +YN++
Sbjct: 169 NEATSLFKQMVERNVMPDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNAL 228

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G C       A +L    ++ G  PS  +Y +L++G C    +++A+ +L  M  K  
Sbjct: 229 MDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKAL 288

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
              T   +  ++  C    P +   +L  M      PD++T + V++G CK G ++EA +
Sbjct: 289 TPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGLLPDLMTYSIVLDGLCKQGHLDEAFE 348

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +L  M   K   P+   +T +I G+ N G++ EA   L+  +  +G  P +VTY  ++ G
Sbjct: 349 LLKAMQESKI-EPNIFIYTILIQGMCNFGKL-EAARELFSNLFVKGIQPDVVTYTVMISG 406

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413
           L +     EA E+F  M   G + +S TY ++I G   +     A R  +++V
Sbjct: 407 LLKGGLSNEACELFRDMAVHGCLPNSCTYNVIIQGFLRNGDTSNAGRLIEEMV 459



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 128/242 (52%), Gaps = 2/242 (0%)

Query: 264 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF 323
            +VL  M +   QP+ +T +T++NG     +I +A+K+ ++MV   +  PD +T++TII 
Sbjct: 32  FSVLGNMFKLGLQPNHVTFSTLLNGLSSKAKIIDAVKLFDEMVKMGY-EPDVITYSTIIN 90

Query: 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 383
           GL  +G    A+ LL + M ++G  P +V Y+ ++  L + + + EA E  + M+  G+ 
Sbjct: 91  GLCKMGSTTMAIQLLKK-MEEKGCKPNVVVYSTIIDSLCKDKLITEAMEFLSEMVNRGIS 149

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
            +  TY+ ++ G C   + +EA   +  +V  + + D   +  ++ GL + G I EA   
Sbjct: 150 PNVVTYSSILHGFCNLGRSNEATSLFKQMVERNVMPDTVTFNILVDGLSKEGMILEAQCV 209

Query: 444 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGN 503
              +++ GV PN+  YN ++DG C  S   EA ++   M + G  P   ++ IL K H  
Sbjct: 210 FETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHCK 269

Query: 504 RG 505
            G
Sbjct: 270 SG 271



 Score = 42.4 bits (98), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 4/74 (5%)

Query: 6   GLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSL 65
           GLS   EA +LF DM   G +PN  +Y  +I G+ R G+   A ++ +EM   G   +S 
Sbjct: 411 GLSN--EACELFRDMAVHGCLPNSCTYNVIIQGFLRNGDTSNAGRLIEEMVGRGFSADSS 468

Query: 66  TYSVLVRGVLRTRD 79
           T+ +L    L +RD
Sbjct: 469 TFQMLSD--LESRD 480


>gi|225424122|ref|XP_002280156.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Vitis vinifera]
          Length = 718

 Score =  206 bits (523), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 130/497 (26%), Positives = 235/497 (47%), Gaps = 42/497 (8%)

Query: 10  VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSV 69
           + +A +++  M   G  P +V+Y TL+  YC+ G++     +  EM+  G  PN +TY+V
Sbjct: 215 MSKAVEVYRTMGEFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNV 274

Query: 70  LVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAED 129
           L+ G+ +  + E+A  L+ ++ +       L V+   +  L+     +G + E   + E+
Sbjct: 275 LINGLSKKGEFEQAKGLIGEMLK-----TGLKVSAYTYNPLIYGYFNKGMLAEALSLQEE 329

Query: 130 MPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG 189
           M    +          I  LC+ GR   A + +  M    L P +VSYN++++G C+ G 
Sbjct: 330 MVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGN 389

Query: 190 CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNI 249
            M+A+ L +E       P+  TY  L++GLC + +LE A+++                  
Sbjct: 390 LMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLK----------------- 432

Query: 250 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK 309
                             V M+     PD++T   ++NG CKMG +  A +  ++M+   
Sbjct: 433 ------------------VEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEG 474

Query: 310 FCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEE 369
               D+  + T I G L +G    A +L  + M  +G+ P ++ YN V+ GL +L  +EE
Sbjct: 475 L-ELDSYAYATRIVGELKLGDTSRAFSL-QEEMLAKGFPPDLIIYNVVVDGLCKLGNLEE 532

Query: 370 AKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIK 429
           A E+   M+  GV+ D  TY  +I    E+ +L + +  + +++          Y  +I 
Sbjct: 533 ASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLIH 592

Query: 430 GLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNP 489
           G    G++  A  +  E+ + G+ PN++ YN +I+G CK+    +AY    EM + G+ P
Sbjct: 593 GHAGKGRLERAFIYFSEMQEKGILPNVITYNSLINGLCKVRRMDQAYNFFAEMVEKGIFP 652

Query: 490 DAVTWRILDKLHGNRGN 506
           +  ++ IL   + N GN
Sbjct: 653 NKYSYTILINENCNMGN 669



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 106/361 (29%), Positives = 177/361 (49%), Gaps = 13/361 (3%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC L R+ +A +   DM +   +P+VVSY TLI+GYCR G +  A+ +FDE+R   + P 
Sbjct: 349 LCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPT 408

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY+ L+ G+ R  ++E A  L  ++       E ++ +   +  LV+  C+ G ++  
Sbjct: 409 IVTYNTLLDGLCRQGELEVAQQLKVEMI-----NEGIAPDIVTYTILVNGSCKMGSLSMA 463

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
               ++M       + +A    I    + G    A  +   M  +G  P L+ YN +V G
Sbjct: 464 QEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDG 523

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LCK G    A +LL++ +  G +P   TY  ++        L K R++   MLSK     
Sbjct: 524 LCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPS 583

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQ---PDVITLNTVINGFCKMGRIEEALK 300
                + +           L    ++  + Q +   P+VIT N++ING CK+ R+++A  
Sbjct: 584 VVTYTVLIHGHA---GKGRLERAFIYFSEMQEKGILPNVITYNSLINGLCKVRRMDQAYN 640

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
              +MV  K   P+  ++T +I    N+G  QEAL+ LY+ M  RG  P   T++A+L+ 
Sbjct: 641 FFAEMVE-KGIFPNKYSYTILINENCNMGNWQEALS-LYKQMLDRGVQPDSCTHSALLKQ 698

Query: 361 L 361
           L
Sbjct: 699 L 699



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 145/310 (46%), Gaps = 17/310 (5%)

Query: 4   LCGLSRVGE---AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           L GL R GE   A +L  +M + G  P++V+YT L++G C+ G + +A + FDEM H G+
Sbjct: 416 LDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGL 475

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEE---EDLSVNNAAFANLVDSLCRE 117
             +S  Y+  + G L+  D  RA    F L E M  +    DL + N     +VD LC+ 
Sbjct: 476 ELDSYAYATRIVGELKLGDTSRA----FSLQEEMLAKGFPPDLIIYNV----VVDGLCKL 527

Query: 118 GYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
           G + E   + + M     + +      +I +   +GR      + Y M  +GLTPS+V+Y
Sbjct: 528 GNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTY 587

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
             ++HG    G   RA+    E  + G LP+  TY  L+ GLC    +++A      M+ 
Sbjct: 588 TVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLINGLCKVRRMDQAYNFFAEMVE 647

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGF---CKMGR 294
           K          I +   C + N  E L++   ML    QPD  T + ++      CK+  
Sbjct: 648 KGIFPNKYSYTILINENCNMGNWQEALSLYKQMLDRGVQPDSCTHSALLKQLGKDCKLQA 707

Query: 295 IEEALKVLND 304
           + +   +L+ 
Sbjct: 708 VRQLESLLDS 717



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 94/186 (50%), Gaps = 5/186 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC L  + EA +L   M S G +P+ V+YT++IH +   G +    ++F EM   G+
Sbjct: 521 VDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGL 580

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TY+VL+ G      +ERA    F  +  M+E+  L  N   + +L++ LC+   +
Sbjct: 581 TPSVVTYTVLIHGHAGKGRLERA----FIYFSEMQEKGILP-NVITYNSLINGLCKVRRM 635

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           ++ +    +M +      +++   +I+  C  G    A  +   M  RG+ P   +++++
Sbjct: 636 DQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEALSLYKQMLDRGVQPDSCTHSAL 695

Query: 181 VHGLCK 186
           +  L K
Sbjct: 696 LKQLGK 701



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 82/202 (40%), Gaps = 36/202 (17%)

Query: 331 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYA 390
           +++ L++  +++  R  SP +   N +LR L     + +A EV+  M   G+     TY 
Sbjct: 180 VEQCLSVFDKMIKSR-LSPDVKNCNRILRILRDKDLMSKAVEVYRTMGEFGIKPTIVTYN 238

Query: 391 IVIDGLCESNQLDEAKRFWDDI----VWPSNIHDN------------------------- 421
            ++D  C+  ++ +      ++      P+++  N                         
Sbjct: 239 TLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKT 298

Query: 422 ------YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREA 475
                 Y Y  +I G    G + EA+    E+V  G +P +  YN  I G CKL    +A
Sbjct: 299 GLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDA 358

Query: 476 YQILREMRKNGLNPDAVTWRIL 497
            Q L +M  N L PD V++  L
Sbjct: 359 MQQLSDMLANNLLPDVVSYNTL 380


>gi|356532716|ref|XP_003534917.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 527

 Score =  206 bits (523), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 128/494 (25%), Positives = 240/494 (48%), Gaps = 42/494 (8%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           L  +     A  LF  M+ +G  P++ +   LI+ +C  G+M  ++ V  ++   G  PN
Sbjct: 20  LVKMKHYPTAISLFKQMQVKGIEPDLFTLNILINCFCHLGQMTFSFTVLGKILKLGYQPN 79

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           ++T + L++G+    +V+++     K+       +   ++  ++A L++ LC+ G     
Sbjct: 80  TITLNTLMKGLCLKGEVKKSLHFHDKVVA-----QGFQMDQVSYATLLNGLCKIGETRSA 134

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            ++   +    +         +ID LC+    + A  +   M  RG+ P++++Y+++++G
Sbjct: 135 LKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPNVITYSTLIYG 194

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            C  G  M A+ LL E I     P+ +TY +L++ LC E  +++A+              
Sbjct: 195 FCLAGQLMEAFGLLNEMILKNINPNVYTYTILMDALCKEGKVKEAK-------------- 240

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                                N+L  M +   +P+V++ NT+++G+C +G ++ A ++ +
Sbjct: 241 ---------------------NLLAVMTKEGVKPNVVSYNTLMDGYCLIGEVQNAKQMFH 279

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            MV  K   P+  ++  +I  L    R+ EA+NLL +V+  +   P  VTY++++ G  +
Sbjct: 280 TMVQ-KGVNPNVYSYNIMIDRLCKSKRVDEAMNLLREVL-HKNMVPNTVTYSSLIDGFCK 337

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
           L R+  A ++   M   G  AD  TY  ++D LC++  LD+A   +  +       + Y 
Sbjct: 338 LGRITSALDLLKEMYHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPNKYT 397

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y A+I GLC+ G+   A      L+  G   N+  YNV+I G CK  M  EA  +  +M 
Sbjct: 398 YTALIDGLCKGGRHKNAQKLFQHLLVKGCRINVWTYNVMISGLCKEGMLDEALAMKSKME 457

Query: 484 KNGLNPDAVTWRIL 497
           +NG  PDAVT+ I+
Sbjct: 458 ENGCIPDAVTFEII 471



 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 126/503 (25%), Positives = 240/503 (47%), Gaps = 51/503 (10%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C L ++  +  +   +   G+ PN ++  TL+ G C  GE+  +    D++   G   +
Sbjct: 55  FCHLGQMTFSFTVLGKILKLGYQPNTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMD 114

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            ++Y+ L+ G+ +  +   A  L+     RM E+     N   +  ++D LC++  VNE 
Sbjct: 115 QVSYATLLNGLCKIGETRSALKLL-----RMIEDRSTRPNVVMYNTIIDGLCKDKLVNEA 169

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           + +  +M                                     RG+ P++++Y+++++G
Sbjct: 170 YDLYSEMDA-----------------------------------RGIFPNVITYSTLIYG 194

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            C  G  M A+ LL E I     P+ +TY +L++ LC E  +++A+ +L  M +K+ V  
Sbjct: 195 FCLAGQLMEAFGLLNEMILKNINPNVYTYTILMDALCKEGKVKEAKNLLAVM-TKEGVKP 253

Query: 244 TRIC-NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
             +  N  +   CLI        +   M+Q    P+V + N +I+  CK  R++EA+ +L
Sbjct: 254 NVVSYNTLMDGYCLIGEVQNAKQMFHTMVQKGVNPNVYSYNIMIDRLCKSKRVDEAMNLL 313

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
            + V  K   P+ VT++++I G   +GRI  AL+LL + M  RG    +VTY ++L  L 
Sbjct: 314 RE-VLHKNMVPNTVTYSSLIDGFCKLGRITSALDLLKE-MYHRGQPADVVTYTSLLDALC 371

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
           + + +++A  +F  M   G+  +  TY  +IDGLC+  +   A++ +  ++      + +
Sbjct: 372 KNQNLDKATALFMKMKERGIQPNKYTYTALIDGLCKGGRHKNAQKLFQHLLVKGCRINVW 431

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
            Y  MI GLC+ G + EA+    ++ ++G  P+ V + ++I    +     +A ++L EM
Sbjct: 432 TYNVMISGLCKEGMLDEALAMKSKMEENGCIPDAVTFEIIIRSLFEKDQNDKAEKLLHEM 491

Query: 483 RKNGLNPDAVTWRILDKLHGNRG 505
               +  D + +R     HG R 
Sbjct: 492 ----IAKDLLRFR---DFHGERS 507



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 107/392 (27%), Positives = 201/392 (51%), Gaps = 4/392 (1%)

Query: 107 FANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE-FACGHMIDSLCRSGRNHGASRVVYVM 165
           F  +V SL +  +      + + M Q K +  + F    +I+  C  G+   +  V+  +
Sbjct: 13  FNKIVGSLVKMKHYPTAISLFKQM-QVKGIEPDLFTLNILINCFCHLGQMTFSFTVLGKI 71

Query: 166 RKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDL 225
            K G  P+ ++ N+++ GLC  G   ++    ++ +  G+   + +Y  L+ GLC   + 
Sbjct: 72  LKLGYQPNTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYATLLNGLCKIGET 131

Query: 226 EKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTV 285
             A K+L+ +  +       + N  +  LC  K   E  ++   M      P+VIT +T+
Sbjct: 132 RSALKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPNVITYSTL 191

Query: 286 INGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQR 345
           I GFC  G++ EA  +LN+M+  K   P+  T+T ++  L   G+++EA NLL  VM + 
Sbjct: 192 IYGFCLAGQLMEAFGLLNEMIL-KNINPNVYTYTILMDALCKEGKVKEAKNLL-AVMTKE 249

Query: 346 GYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA 405
           G  P +V+YN ++ G   +  V+ AK++F+ M+  GV  +  +Y I+ID LC+S ++DEA
Sbjct: 250 GVKPNVVSYNTLMDGYCLIGEVQNAKQMFHTMVQKGVNPNVYSYNIMIDRLCKSKRVDEA 309

Query: 406 KRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDG 465
                +++  + + +   Y+++I G C+ G+I  A+  L E+   G   ++V Y  ++D 
Sbjct: 310 MNLLREVLHKNMVPNTVTYSSLIDGFCKLGRITSALDLLKEMYHRGQPADVVTYTSLLDA 369

Query: 466 ACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            CK     +A  +  +M++ G+ P+  T+  L
Sbjct: 370 LCKNQNLDKATALFMKMKERGIQPNKYTYTAL 401



 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 102/345 (29%), Positives = 171/345 (49%), Gaps = 8/345 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    V EA+ L+ +M +RG  PNV++Y+TLI+G+C  G++  A+ + +EM    +
Sbjct: 157 IDGLCKDKLVNEAYDLYSEMDARGIFPNVITYSTLIYGFCLAGQLMEAFGLLNEMILKNI 216

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN  TY++L+  + +   V+ A  L+      +  +E +  N  ++  L+D  C  G V
Sbjct: 217 NPNVYTYTILMDALCKEGKVKEAKNLL-----AVMTKEGVKPNVVSYNTLMDGYCLIGEV 271

Query: 121 NEVFRIAEDMPQGKSVNEE-FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
               ++   M Q K VN   ++   MID LC+S R   A  ++  +  + + P+ V+Y+S
Sbjct: 272 QNAKQMFHTMVQ-KGVNPNVYSYNIMIDRLCKSKRVDEAMNLLREVLHKNMVPNTVTYSS 330

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++ G CK G    A  LL+E    G      TY  L++ LC   +L+KA  +   M  + 
Sbjct: 331 LIDGFCKLGRITSALDLLKEMYHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERG 390

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                      +  LC          +   +L   C+ +V T N +I+G CK G ++EAL
Sbjct: 391 IQPNKYTYTALIDGLCKGGRHKNAQKLFQHLLVKGCRINVWTYNVMISGLCKEGMLDEAL 450

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ 344
            + + M     C PDAVTF  II  L    +  +A  LL++++ +
Sbjct: 451 AMKSKMEENG-CIPDAVTFEIIIRSLFEKDQNDKAEKLLHEMIAK 494



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 103/236 (43%), Gaps = 35/236 (14%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D+LC   RV EA  L  ++  +  VPN V+Y++LI G+C+ G +  A  +  EM H G 
Sbjct: 297 IDRLCKSKRVDEAMNLLREVLHKNMVPNTVTYSSLIDGFCKLGRITSALDLLKEMYHRGQ 356

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWER---------------------MKEEED 99
             + +TY+ L+  + + +++++A  L  K+ ER                      K  + 
Sbjct: 357 PADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPNKYTYTALIDGLCKGGRHKNAQK 416

Query: 100 L---------SVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC 150
           L          +N   +  ++  LC+EG ++E   +   M +   + +      +I SL 
Sbjct: 417 LFQHLLVKGCRINVWTYNVMISGLCKEGMLDEALAMKSKMEENGCIPDAVTFEIIIRSLF 476

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL 206
              +N  A ++++ M    +   L+ +    HG        +A +LL E I  G L
Sbjct: 477 EKDQNDKAEKLLHEM----IAKDLLRFRDF-HGERSPNENDKAEKLLHEMIAKGLL 527


>gi|414590917|tpg|DAA41488.1| TPA: hypothetical protein ZEAMMB73_494908 [Zea mays]
          Length = 601

 Score =  206 bits (523), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 141/506 (27%), Positives = 232/506 (45%), Gaps = 76/506 (15%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M  LC   R  EA  L   M++ G   +VV+Y TLI G C   E+D A ++  EM   GV
Sbjct: 122 MRGLCASRRTDEAVALLRSMQASGVRADVVTYGTLIRGLCDAAELDGALELLGEMCGSGV 181

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN + YS L+RG                                         CR G  
Sbjct: 182 HPNVIVYSCLLRGY----------------------------------------CRSGRW 201

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +V ++ E+M +     +       ID LC+ GR   A +V  +M +RGL P++V+YN +
Sbjct: 202 QDVSKVFEEMSRLGVEPDVIMFTGFIDDLCKKGRIGKAVKVKDIMVQRGLEPNVVTYNVL 261

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++ LCK G    A  L  E    G  P   TY  L+ GL G  +++ A  +L+ M+    
Sbjct: 262 INCLCKEGSVREALALRNEMDDKGVAPDVVTYNTLIAGLSGVLEMDGAMGLLEEMIQG-- 319

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                           T  +PDV+T N+VI+G CK+GR+ +A+ 
Sbjct: 320 -------------------------------DTLVEPDVVTFNSVIHGLCKIGRMRQAIS 348

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           V  +M+A + C  + VT+  +I G L V ++  A+NL+ +++   G  P   TY+ ++ G
Sbjct: 349 V-REMMAERGCMCNLVTYNYLIGGFLRVHKVNMAMNLMSELISS-GLEPDSFTYSILING 406

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
             +L  V+ A+     M   G+ A+   Y  ++  LC+   +++A   ++++     + D
Sbjct: 407 FSKLWEVDRAEMFLRTMTQRGIRAELFHYIPLLAALCQLGMMEQAMVLFNEMDMNCGL-D 465

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              Y+ M+ G C+SG I  A   L +++D G+ P+ V Y+++I+   KL    EA ++L+
Sbjct: 466 AVAYSTMMYGACKSGDIKAAKQLLQDMLDEGLAPDAVTYSILINMFAKLGDLEEAERVLK 525

Query: 481 EMRKNGLNPDAVTWRILDKLHGNRGN 506
           +M  +G  PD   +  L K +   G 
Sbjct: 526 QMAASGFVPDVAVFDSLIKGYSAEGQ 551



 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 126/489 (25%), Positives = 235/489 (48%), Gaps = 53/489 (10%)

Query: 26  VPNVVSYTTLIHGYCRTG-EMDVAYKVFDEMR---HCGVLPNSLTYSVLVRGVLRTRDVE 81
           V + VSY  ++   CR G ++  A  +  +M    H    PN+++Y++++RG+  +R  +
Sbjct: 73  VRDAVSYNIVLAALCRRGGDLRQALSLLADMSREAHPAARPNAVSYTMVMRGLCASRRTD 132

Query: 82  RANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE-- 139
            A  L+     R  +   +  +   +  L+  LC    ++    +  +M  G  V+    
Sbjct: 133 EAVALL-----RSMQASGVRADVVTYGTLIRGLCDAAELDGALELLGEM-CGSGVHPNVI 186

Query: 140 -FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLE 198
            ++C  ++   CRSGR    S+V   M + G+ P ++ +   +  LCK G   +A ++ +
Sbjct: 187 VYSC--LLRGYCRSGRWQDVSKVFEEMSRLGVEPDVIMFTGFIDDLCKKGRIGKAVKVKD 244

Query: 199 EGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIK 258
             +Q G  P+  TY VL+  LC E  + +A  +   M  K                    
Sbjct: 245 IMVQRGLEPNVVTYNVLINCLCKEGSVREALALRNEMDDKG------------------- 285

Query: 259 NPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG-KFCAPDAVT 317
                             PDV+T NT+I G   +  ++ A+ +L +M+ G     PD VT
Sbjct: 286 ----------------VAPDVVTYNTLIAGLSGVLEMDGAMGLLEEMIQGDTLVEPDVVT 329

Query: 318 FTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCM 377
           F ++I GL  +GR+++A+++  ++M +RG    +VTYN ++ G  R+ +V  A  + + +
Sbjct: 330 FNSVIHGLCKIGRMRQAISV-REMMAERGCMCNLVTYNYLIGGFLRVHKVNMAMNLMSEL 388

Query: 378 LGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKI 437
           +  G+  DS TY+I+I+G  +  ++D A+ F   +       + + Y  ++  LC+ G +
Sbjct: 389 ISSGLEPDSFTYSILINGFSKLWEVDRAEMFLRTMTQRGIRAELFHYIPLLAALCQLGMM 448

Query: 438 HEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            +A+  L+  +D     + V Y+ ++ GACK    + A Q+L++M   GL PDAVT+ IL
Sbjct: 449 EQAM-VLFNEMDMNCGLDAVAYSTMMYGACKSGDIKAAKQLLQDMLDEGLAPDAVTYSIL 507

Query: 498 DKLHGNRGN 506
             +    G+
Sbjct: 508 INMFAKLGD 516



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 83/276 (30%), Positives = 132/276 (47%), Gaps = 17/276 (6%)

Query: 228 ARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDV---ITLNT 284
           A   L  +L +   D   + N  LRA   +     LL+ L         PDV   ++ N 
Sbjct: 32  AAPFLAVLLRRGRADAAALLNRRLRA-APVTEACSLLSAL---------PDVRDAVSYNI 81

Query: 285 VINGFCKMG-RIEEALKVLNDMV--AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQV 341
           V+   C+ G  + +AL +L DM   A     P+AV++T ++ GL    R  EA+ LL + 
Sbjct: 82  VLAALCRRGGDLRQALSLLADMSREAHPAARPNAVSYTMVMRGLCASRRTDEAVALL-RS 140

Query: 342 MPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ 401
           M   G    +VTY  ++RGL     ++ A E+   M G GV  +   Y+ ++ G C S +
Sbjct: 141 MQASGVRADVVTYGTLIRGLCDAAELDGALELLGEMCGSGVHPNVIVYSCLLRGYCRSGR 200

Query: 402 LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNV 461
             +  + ++++       D  ++   I  LC+ G+I +AV     +V  G+ PN+V YNV
Sbjct: 201 WQDVSKVFEEMSRLGVEPDVIMFTGFIDDLCKKGRIGKAVKVKDIMVQRGLEPNVVTYNV 260

Query: 462 VIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           +I+  CK    REA  +  EM   G+ PD VT+  L
Sbjct: 261 LINCLCKEGSVREALALRNEMDDKGVAPDVVTYNTL 296


>gi|242081015|ref|XP_002445276.1| hypothetical protein SORBIDRAFT_07g007630 [Sorghum bicolor]
 gi|241941626|gb|EES14771.1| hypothetical protein SORBIDRAFT_07g007630 [Sorghum bicolor]
          Length = 768

 Score =  205 bits (522), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 154/541 (28%), Positives = 253/541 (46%), Gaps = 45/541 (8%)

Query: 4   LCGLSRVGEAHKLFFDMKSRG---HVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           LC   R  EA +L   M   G   H PNVV+YTT+I G C+   +D A  VF  M   GV
Sbjct: 174 LCNEKRAEEALELMHMMADDGDGSHTPNVVTYTTVIDGLCKAQMVDRAKGVFQHMIDKGV 233

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN+ TY+ L+ G L T   +     + ++ + M     L  +   +A L+D LC+ G  
Sbjct: 234 RPNNHTYTCLIHGYLSTGKWKE----VVQMLQEM-STHGLQPDCVIYAVLLDYLCKNGRC 288

Query: 121 NEVFRIAEDMPQ---------------GKSVNEEFACGH-MIDSLCRSG--RNHGASRVV 162
            E   I + + +               G +     +  H  +D + R+G   +H    ++
Sbjct: 289 TEARNIFDSLIRKGIKPHVTIYGILLHGYATEGALSEMHSFLDLMVRNGVSPDHHIFNIM 348

Query: 163 Y-----------------VMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY 205
           +                  MR++ L+P +V+Y +++  LCK G    A     + I  G 
Sbjct: 349 FNAYAKKAMIDEAMHIFDKMRQQWLSPGVVNYGALIDALCKLGRVDDAVLKFNQMINEGV 408

Query: 206 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 265
            P    +  LV GLC     EKA K+   +L +         NI +  LC      E   
Sbjct: 409 TPDIFVFSSLVYGLCTVDKWEKAEKLFFEVLDQGIRLNAAFFNILMCNLCREGRVMEAQR 468

Query: 266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 325
           ++  ML+   +PDVI+ NT+++G C  GRI+EA K+L+ MV+     PD  T+ T++ G 
Sbjct: 469 LIDLMLRVDVRPDVISYNTLVDGHCLTGRIDEAAKLLDVMVSIGL-KPDEFTYNTLLHGY 527

Query: 326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 385
               RI +A +L ++ M  +G +PG+VTYN +L GLF++ R  EAKE++  M+      D
Sbjct: 528 CKARRIDDAYSL-FREMLMKGLTPGVVTYNTILHGLFQIGRFCEAKELYLNMINNRRKCD 586

Query: 386 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY 445
             TY I+++GLC +N +DEA + +  +       D +    MI  L + G+  +A+    
Sbjct: 587 IYTYTIILNGLCRNNFVDEAFKMFQSLCSKDLQLDIFTINIMIGALLKGGRKEDAMDLFA 646

Query: 446 ELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
            +   G+ P++  Y ++ +   K     E  ++   M +NG  P++     L +   +RG
Sbjct: 647 TISAYGLVPDVETYRLIAENLIKEGSLEELDELFSAMEENGTAPNSRMLNALVRWLLHRG 706

Query: 506 N 506
           +
Sbjct: 707 D 707



 Score =  171 bits (434), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 123/481 (25%), Positives = 220/481 (45%), Gaps = 12/481 (2%)

Query: 26  VPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCG-VLPNSLTYSVLVRGVLRTRDVERAN 84
            P+  +YT LI  +CR G +   +  F  +   G  L N++ +  L++G+   + V+ A 
Sbjct: 89  APSSCTYTILIGCFCRMGRLKHGFAAFGLILKTGWSLNNTVIFGQLLKGLCDAKRVDEAT 148

Query: 85  VLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP---QGKSVNEEFA 141
            ++     R   E   ++N  ++  L+  LC E    E   +   M     G        
Sbjct: 149 DILL----RRMPEFGCTLNVISYNILLKGLCNEKRAEEALELMHMMADDGDGSHTPNVVT 204

Query: 142 CGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGI 201
              +ID LC++     A  V   M  +G+ P+  +Y  ++HG    G      Q+L+E  
Sbjct: 205 YTTVIDGLCKAQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYLSTGKWKEVVQMLQEMS 264

Query: 202 QFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPT 261
             G  P    Y VL++ LC      +AR +   ++ K       I  I L         +
Sbjct: 265 THGLQPDCVIYAVLLDYLCKNGRCTEARNIFDSLIRKGIKPHVTIYGILLHGYATEGALS 324

Query: 262 ELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTI 321
           E+ + L  M++    PD    N + N + K   I+EA+ + + M   ++ +P  V +  +
Sbjct: 325 EMHSFLDLMVRNGVSPDHHIFNIMFNAYAKKAMIDEAMHIFDKM-RQQWLSPGVVNYGAL 383

Query: 322 IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG 381
           I  L  +GR+ +A+ L +  M   G +P I  +++++ GL  + + E+A+++F  +L  G
Sbjct: 384 IDALCKLGRVDDAV-LKFNQMINEGVTPDIFVFSSLVYGLCTVDKWEKAEKLFFEVLDQG 442

Query: 382 VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAV 441
           +  ++  + I++  LC   ++ EA+R  D ++      D   Y  ++ G C +G+I EA 
Sbjct: 443 IRLNAAFFNILMCNLCREGRVMEAQRLIDLMLRVDVRPDVISYNTLVDGHCLTGRIDEAA 502

Query: 442 HFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLH 501
             L  +V  G+ P+   YN ++ G CK     +AY + REM   GL P  VT+  +  LH
Sbjct: 503 KLLDVMVSIGLKPDEFTYNTLLHGYCKARRIDDAYSLFREMLMKGLTPGVVTYNTI--LH 560

Query: 502 G 502
           G
Sbjct: 561 G 561



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 128/509 (25%), Positives = 222/509 (43%), Gaps = 48/509 (9%)

Query: 4   LCGLSRVGEAHKLFFD-MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV-- 60
           LC   RV EA  +    M   G   NV+SY  L+ G C     + A ++   M   G   
Sbjct: 138 LCDAKRVDEATDILLRRMPEFGCTLNVISYNILLKGLCNEKRAEEALELMHMMADDGDGS 197

Query: 61  -LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGY 119
             PN +TY+ ++ G+ + + V+RA                       F +++D   R   
Sbjct: 198 HTPNVVTYTTVIDGLCKAQMVDRA--------------------KGVFQHMIDKGVRPN- 236

Query: 120 VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
                            N  + C  +I     +G+     +++  M   GL P  V Y  
Sbjct: 237 -----------------NHTYTC--LIHGYLSTGKWKEVVQMLQEMSTHGLQPDCVIYAV 277

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++  LCK+G C  A  + +  I+ G  P    Y +L+ G   E  L +    L  M+   
Sbjct: 278 LLDYLCKNGRCTEARNIFDSLIRKGIKPHVTIYGILLHGYATEGALSEMHSFLDLMVRNG 337

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                 I NI   A        E +++   M Q    P V+    +I+  CK+GR+++A+
Sbjct: 338 VSPDHHIFNIMFNAYAKKAMIDEAMHIFDKMRQQWLSPGVVNYGALIDALCKLGRVDDAV 397

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
              N M+  +   PD   F+++++GL  V + ++A  L ++V+ Q G       +N ++ 
Sbjct: 398 LKFNQMI-NEGVTPDIFVFSSLVYGLCTVDKWEKAEKLFFEVLDQ-GIRLNAAFFNILMC 455

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
            L R  RV EA+ + + ML + V  D  +Y  ++DG C + ++DEA +  D +V      
Sbjct: 456 NLCREGRVMEAQRLIDLMLRVDVRPDVISYNTLVDGHCLTGRIDEAAKLLDVMVSIGLKP 515

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           D + Y  ++ G C++ +I +A     E++  G+TP +V YN ++ G  ++    EA ++ 
Sbjct: 516 DEFTYNTLLHGYCKARRIDDAYSLFREMLMKGLTPGVVTYNTILHGLFQIGRFCEAKELY 575

Query: 480 REMRKNGLNPDAVTWRILDKLHGNRGNDF 508
             M  N    D  T+ I+  L+G   N+F
Sbjct: 576 LNMINNRRKCDIYTYTII--LNGLCRNNF 602



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 125/512 (24%), Positives = 218/512 (42%), Gaps = 67/512 (13%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    V  A  +F  M  +G  PN  +YT LIHGY  TG+     ++  EM   G+
Sbjct: 209 IDGLCKAQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYLSTGKWKEVVQMLQEMSTHGL 268

Query: 61  LPNSLTYSVLV------------RGVLRT--RDVERANVLMFKLW----------ERMKE 96
            P+ + Y+VL+            R +  +  R   + +V ++ +             M  
Sbjct: 269 QPDCVIYAVLLDYLCKNGRCTEARNIFDSLIRKGIKPHVTIYGILLHGYATEGALSEMHS 328

Query: 97  EEDLSVNNAA------FANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC 150
             DL V N        F  + ++  ++  ++E   I + M Q          G +ID+LC
Sbjct: 329 FLDLMVRNGVSPDHHIFNIMFNAYAKKAMIDEAMHIFDKMRQQWLSPGVVNYGALIDALC 388

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
           + GR   A      M   G+TP +  ++S+V+GLC      +A +L  E +  G   +  
Sbjct: 389 KLGRVDDAVLKFNQMINEGVTPDIFVFSSLVYGLCTVDKWEKAEKLFFEVLDQGIRLNAA 448

Query: 211 TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC-NIYLRALCLIKNPTELLNVLVF 269
            + +L+  LC E  + +A++++  ML + DV    I  N  +   CL     E   +L  
Sbjct: 449 FFNILMCNLCREGRVMEAQRLIDLML-RVDVRPDVISYNTLVDGHCLTGRIDEAAKLLDV 507

Query: 270 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG 329
           M+    +PD  T NT+++G+CK  RI++A  +  +M+  K   P  VT+ TI+ GL  +G
Sbjct: 508 MVSIGLKPDEFTYNTLLHGYCKARRIDDAYSLFREMLM-KGLTPGVVTYNTILHGLFQIG 566

Query: 330 RIQEALNL----------------------------------LYQVMPQRGYSPGIVTYN 355
           R  EA  L                                  ++Q +  +     I T N
Sbjct: 567 RFCEAKELYLNMINNRRKCDIYTYTIILNGLCRNNFVDEAFKMFQSLCSKDLQLDIFTIN 626

Query: 356 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP 415
            ++  L +  R E+A ++F  +   G+V D  TY ++ + L +   L+E    +  +   
Sbjct: 627 IMIGALLKGGRKEDAMDLFATISAYGLVPDVETYRLIAENLIKEGSLEELDELFSAMEEN 686

Query: 416 SNIHDNYVYAAMIKGLCRSGKIHEAVHFLYEL 447
               ++ +  A+++ L   G I  A  +L +L
Sbjct: 687 GTAPNSRMLNALVRWLLHRGDIGRAGVYLSKL 718



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/291 (28%), Positives = 136/291 (46%), Gaps = 11/291 (3%)

Query: 221 GESDLEKARKVLQFMLSKKDVDRTRICNIYL----RALCLIKNP--TELLNVLVFMLQTQ 274
           G   L+ A K+   ML+       R  N  L    RA C   +     L N ++     +
Sbjct: 28  GSLGLDDALKLFDEMLTYARPASVRTFNRLLTVVSRARCSSASELVVSLFNRMIRECSVK 87

Query: 275 CQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEA 334
             P   T   +I  FC+MGR++        ++   +   + V F  ++ GL +  R+ EA
Sbjct: 88  VAPSSCTYTILIGCFCRMGRLKHGFAAFGLILKTGWSLNNTVIFGQLLKGLCDAKRVDEA 147

Query: 335 LNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGV---VADSTTYAI 391
            ++L + MP+ G +  +++YN +L+GL   +R EEA E+ + M   G      +  TY  
Sbjct: 148 TDILLRRMPEFGCTLNVISYNILLKGLCNEKRAEEALELMHMMADDGDGSHTPNVVTYTT 207

Query: 392 VIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 451
           VIDGLC++  +D AK  +  ++      +N+ Y  +I G   +GK  E V  L E+   G
Sbjct: 208 VIDGLCKAQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYLSTGKWKEVVQMLQEMSTHG 267

Query: 452 VTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
           + P+ V Y V++D  CK     EA  I   + + G+ P    + IL  LHG
Sbjct: 268 LQPDCVIYAVLLDYLCKNGRCTEARNIFDSLIRKGIKPHVTIYGIL--LHG 316



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 60/124 (48%), Gaps = 9/124 (7%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           R  +A  LF  + + G VP+V +Y  +     + G ++   ++F  M   G  PNS   +
Sbjct: 637 RKEDAMDLFATISAYGLVPDVETYRLIAENLIKEGSLEELDELFSAMEENGTAPNSRMLN 696

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
            LVR +L   D+ RA V + KL     +E++ S+  +  + L+    R  Y     ++A+
Sbjct: 697 ALVRWLLHRGDIGRAGVYLSKL-----DEKNFSLEASTTSMLISIYSRAEYQ----QLAK 747

Query: 129 DMPQ 132
            +P+
Sbjct: 748 SLPE 751


>gi|242067353|ref|XP_002448953.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
 gi|241934796|gb|EES07941.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
          Length = 734

 Score =  205 bits (522), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 143/506 (28%), Positives = 244/506 (48%), Gaps = 13/506 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKS---RGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
            C  +R  EA +L   M +   R   PNVV+YTT+I G C+    D A  VF +M   GV
Sbjct: 179 FCNENRAEEALELLRMMANDHGRSCPPNVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGV 238

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN+ TY+ L+ G L     +    ++ K+  R      L  +   + +L++ LC    +
Sbjct: 239 KPNNDTYNCLIHGYLSIGKWKEVVQMLEKMSAR-----GLKPDCYTYGSLLNYLCA---L 290

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E+    + M +     +         +  + G    A  +   MR+ GL+P++V+Y ++
Sbjct: 291 SEMHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGAL 350

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +  LCK G    A     + I  G  P+   +  LV GLC     E+A +++  ML +  
Sbjct: 351 IDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGI 410

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                  N  +  LC +    E   ++  M     +PD  +   +I+G+C  GR +EA K
Sbjct: 411 CPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLAGRTDEAEK 470

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           V + MV+    +P  VT+ T++ G  +  RI +A   L++ M ++G +PG+VTYN +L G
Sbjct: 471 VFDGMVSIGL-SPTEVTYNTLLHGYCSASRIDDAY-CLFREMLRKGVTPGVVTYNTILHG 528

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           LF+ +R  EAKE++  M+  G   D  TY I+++GLC+SN +DEA + +  +       +
Sbjct: 529 LFQTKRFSEAKELYLNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLN 588

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              +  MI  L + G+  +A+     +  +G+ PN+V Y +V +   +     E   +  
Sbjct: 589 IITFTIMIGALLKGGRKEDAMDLFAAIPANGLVPNVVTYRLVAENLIEEGSLEEFDSLFS 648

Query: 481 EMRKNGLNPDAVTWRILDKLHGNRGN 506
            M KNG  P++     L +   +RG+
Sbjct: 649 AMEKNGTAPNSQMLNALVRRLLHRGD 674



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 122/475 (25%), Positives = 217/475 (45%), Gaps = 12/475 (2%)

Query: 26  VPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANV 85
            PN  +Y+ LI   CR G +  ++  F  +   G   N +  + L++G+    D +R   
Sbjct: 95  APNTCTYSILIGCLCRMGRLKHSFATFGLILKTGWRVNDIVINQLLKGLC---DGKRVGE 151

Query: 86  LMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP--QGKSVNEEFAC- 142
            M  L +RM  E   + +  +++ L+   C E    E   +   M    G+S        
Sbjct: 152 AMDVLLQRMP-ELGCTPDTVSYSILLKGFCNENRAEEALELLRMMANDHGRSCPPNVVTY 210

Query: 143 GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQ 202
             +ID LC++     A  V   M   G+ P+  +YN ++HG    G      Q+LE+   
Sbjct: 211 TTVIDGLCKAQLFDRAEGVFQQMIDNGVKPNNDTYNCLIHGYLSIGKWKEVVQMLEKMSA 270

Query: 203 FGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTE 262
            G  P  +TY  L+  LC  S++      L  M+         I NI+  A        +
Sbjct: 271 RGLKPDCYTYGSLLNYLCALSEMH---SFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDK 327

Query: 263 LLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTII 322
            +++   M Q    P+V+    +I+  CK+GR+++A    N M+  +   P+ V F +++
Sbjct: 328 AMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMI-NEGVTPNIVVFNSLV 386

Query: 323 FGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGV 382
           +GL  V + + A  L+Y+++ Q G  P  V +N ++  L  + RV E + + + M  +GV
Sbjct: 387 YGLCTVDKWERAEELVYEMLDQ-GICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGV 445

Query: 383 VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVH 442
             D+ +Y  +I G C + + DEA++ +D +V          Y  ++ G C + +I +A  
Sbjct: 446 RPDAFSYTPLISGYCLAGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYC 505

Query: 443 FLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
              E++  GVTP +V YN ++ G  +     EA ++   M  +G   D  T+ I+
Sbjct: 506 LFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYNII 560



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 119/463 (25%), Positives = 211/463 (45%), Gaps = 25/463 (5%)

Query: 50  KVFDEM-RHCG--VLPNSLTYSVLVRGVLRTRDVERANV---LMFKLWERMKEEEDLSVN 103
            +F+ M R C   V PN+ TYS+L+  + R   ++ +     L+ K   R        VN
Sbjct: 81  SLFNRMVRECSIKVAPNTCTYSILIGCLCRMGRLKHSFATFGLILKTGWR--------VN 132

Query: 104 NAAFANLVDSLCREGYVNEVFRI-AEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVV 162
           +     L+  LC    V E   +  + MP+     +  +   ++   C   R   A  ++
Sbjct: 133 DIVINQLLKGLCDGKRVGEAMDVLLQRMPELGCTPDTVSYSILLKGFCNENRAEEALELL 192

Query: 163 YVMRK---RGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGL 219
            +M     R   P++V+Y +++ GLCK     RA  + ++ I  G  P+  TY  L+ G 
Sbjct: 193 RMMANDHGRSCPPNVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGVKPNNDTYNCLIHGY 252

Query: 220 CGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDV 279
                + K ++V+Q +           C  Y   L  +   +E+ + L  M++    PD 
Sbjct: 253 LS---IGKWKEVVQMLEKMSARGLKPDCYTYGSLLNYLCALSEMHSFLDLMVENGLSPDH 309

Query: 280 ITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLY 339
              N   + + K G I++A+ + N M      +P+ V +  +I  L  +GR+ +A  + +
Sbjct: 310 HIFNIFFSAYAKCGMIDKAMDIFNKMRQHGL-SPNVVNYGALIDALCKLGRVDDA-EVKF 367

Query: 340 QVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCES 399
             M   G +P IV +N+++ GL  + + E A+E+   ML  G+  ++  +  +I  LC  
Sbjct: 368 NQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCNV 427

Query: 400 NQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCY 459
            ++ E +R  D +       D + Y  +I G C +G+  EA      +V  G++P  V Y
Sbjct: 428 GRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLAGRTDEAEKVFDGMVSIGLSPTEVTY 487

Query: 460 NVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
           N ++ G C  S   +AY + REM + G+ P  VT+  +  LHG
Sbjct: 488 NTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTI--LHG 528



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 105/387 (27%), Positives = 175/387 (45%), Gaps = 12/387 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC LS   E H     M   G  P+   +      Y + G +D A  +F++MR  G+
Sbjct: 284 LNYLCALS---EMHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGL 340

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCR-EGY 119
            PN + Y  L+  + +   V+ A V   ++       E ++ N   F +LV  LC  + +
Sbjct: 341 SPNVVNYGALIDALCKLGRVDDAEVKFNQMIN-----EGVTPNIVVFNSLVYGLCTVDKW 395

Query: 120 VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
                 + E + QG   N  F    +I +LC  GR     R++ +M   G+ P   SY  
Sbjct: 396 ERAEELVYEMLDQGICPNAVFF-NTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTP 454

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++ G C  G    A ++ +  +  G  P+E TY  L+ G C  S ++ A  + + ML K 
Sbjct: 455 LISGYCLAGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKG 514

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                   N  L  L   K  +E   + + M+ +  + D+ T N ++NG CK   ++EA 
Sbjct: 515 VTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYNIILNGLCKSNCVDEAF 574

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           K+   + + K    + +TFT +I  LL  GR ++A++L +  +P  G  P +VTY  V  
Sbjct: 575 KMFQSLCS-KGLQLNIITFTIMIGALLKGGRKEDAMDL-FAAIPANGLVPNVVTYRLVAE 632

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADS 386
            L     +EE   +F+ M   G   +S
Sbjct: 633 NLIEEGSLEEFDSLFSAMEKNGTAPNS 659



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 41/85 (48%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           R  +A  LF  + + G VPNVV+Y  +       G ++    +F  M   G  PNS   +
Sbjct: 604 RKEDAMDLFAAIPANGLVPNVVTYRLVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLN 663

Query: 69  VLVRGVLRTRDVERANVLMFKLWER 93
            LVR +L   D+ RA   + KL ER
Sbjct: 664 ALVRRLLHRGDISRAGAYLSKLDER 688


>gi|222628658|gb|EEE60790.1| hypothetical protein OsJ_14375 [Oryza sativa Japonica Group]
          Length = 754

 Score =  205 bits (522), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 146/534 (27%), Positives = 258/534 (48%), Gaps = 49/534 (9%)

Query: 6   GLSRVGE---AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           G S+ GE   AH LF+ M+ +G +PNVV+Y++LI+G C+T EMD A +V  +M   GV P
Sbjct: 162 GFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAGVRP 221

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           N++TY+ L+ G   T  + + +V +FK         D+   N+     + +LC+ G + E
Sbjct: 222 NNMTYNCLIHG-YSTSGMWKESVRVFKEMSSSLLVPDVGNCNS----FMTALCKHGRIKE 276

Query: 123 VFRIAEDM----PQGKSVN-------------------------------EEFACGHMID 147
              I + M    P+   ++                               +      +I+
Sbjct: 277 ARDIFDSMVLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLIN 336

Query: 148 SLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLP 207
           +  R G    +  +   M K+G+ P ++++++++   C+ G    A +     I  G  P
Sbjct: 337 AYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHMIDTGVPP 396

Query: 208 SEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR-TRICNIYLRALCLIKNPTELLNV 266
               Y  L++G C   DL KA++++  MLSK       +     +  LC      E  +V
Sbjct: 397 DTAVYSCLIQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFTSIINNLCKEGRVAEGKDV 456

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
           +  ++ T  +P++IT N++++G+C +G ++EA+ +L+ M +     PD  T+ T++ G  
Sbjct: 457 VDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVG-VEPDIYTYNTLVDGYC 515

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
             GRI +AL L   ++ +R  +   V+YN +L GLF+ RR   AKE+F+ M+  G+    
Sbjct: 516 KHGRIDDALTLFRDMLHKR-VTLTSVSYNIILHGLFQARRTIVAKEMFHEMIESGMAVSI 574

Query: 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE 446
            TYA V+ GLC +N  DEA    + +   +   D   +  +I+ + + G+  EA      
Sbjct: 575 HTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIRAMFKVGRRQEAKELFAA 634

Query: 447 LVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKL 500
           +   G+ P I+ Y V+I    K     +A  +   M K+   PD+   RIL+++
Sbjct: 635 ISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSMEKSSCTPDS---RILNEI 685



 Score =  175 bits (443), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 127/510 (24%), Positives = 233/510 (45%), Gaps = 43/510 (8%)

Query: 24  GHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERA 83
           G  P+V SY  LI G+ + GE+D A+ +F +M   G++PN +TYS L+ G+ +T+++++A
Sbjct: 148 GLGPDVFSYNALIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSLINGLCKTKEMDKA 207

Query: 84  NVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACG 143
             ++     R      +  NN  +  L+      G   E  R+ ++M     V +   C 
Sbjct: 208 ERVL-----RQMVGAGVRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSLLVPDVGNCN 262

Query: 144 HMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG--------------- 188
             + +LC+ GR   A  +   M  +G  P ++SY +++HG    G               
Sbjct: 263 SFMTALCKHGRIKEARDIFDSMVLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCE 322

Query: 189 -------------------GCM-RAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKA 228
                              G M ++  + E+  + G  P   T+  ++   C    L+ A
Sbjct: 323 GVVPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDA 382

Query: 229 RKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNT-VIN 287
            +    M+       T + +  ++  C  ++  +   ++  ML     P  I   T +IN
Sbjct: 383 MEKFNHMIDTGVPPDTAVYSCLIQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFTSIIN 442

Query: 288 GFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGY 347
             CK GR+ E   V+ D++      P+ +TF +++ G   VG ++EA+ LL   M   G 
Sbjct: 443 NLCKEGRVAEGKDVV-DLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLL-DSMESVGV 500

Query: 348 SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKR 407
            P I TYN ++ G  +  R+++A  +F  ML   V   S +Y I++ GL ++ +   AK 
Sbjct: 501 EPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTIVAKE 560

Query: 408 FWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGAC 467
            + +++        + YA ++ GLCR+    EA   L +L    V  +I+ +N+VI    
Sbjct: 561 MFHEMIESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIRAMF 620

Query: 468 KLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           K+  ++EA ++   +   GL P  +T+R++
Sbjct: 621 KVGRRQEAKELFAAISTYGLVPTILTYRVM 650



 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 98/370 (26%), Positives = 178/370 (48%), Gaps = 44/370 (11%)

Query: 167 KRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLE 226
           + GL P + SYN+++ G  K G   +A+ L  +  + G +P+  TY  L+ GLC   +++
Sbjct: 146 RTGLGPDVFSYNALIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSLINGLCKTKEMD 205

Query: 227 KARKVLQFMLSK-----------------------------KDVDRTRI------CNIYL 251
           KA +VL+ M+                               K++  + +      CN ++
Sbjct: 206 KAERVLRQMVGAGVRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSLLVPDVGNCNSFM 265

Query: 252 RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC 311
            ALC      E  ++   M+    +PDVI+   +++G+   G I     + N MV  +  
Sbjct: 266 TALCKHGRIKEARDIFDSMVLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVC-EGV 324

Query: 312 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK 371
            PD   F T+I     +G + ++L L+++ M ++G +P I+T++ V+    RL R+++A 
Sbjct: 325 VPDRHVFNTLINAYARLGMMDKSL-LMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAM 383

Query: 372 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI----VWPSNIHDNYVYAAM 427
           E FN M+  GV  D+  Y+ +I G C    L +AK    D+    + P  I     + ++
Sbjct: 384 EKFNHMIDTGVPPDTAVYSCLIQGQCNRRDLVKAKELISDMLSKGIPPPCIK---FFTSI 440

Query: 428 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
           I  LC+ G++ E    +  ++ +G  PN++ +N ++DG C +   +EA  +L  M   G+
Sbjct: 441 INNLCKEGRVAEGKDVVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGV 500

Query: 488 NPDAVTWRIL 497
            PD  T+  L
Sbjct: 501 EPDIYTYNTL 510



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 119/249 (47%), Gaps = 6/249 (2%)

Query: 246 ICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM 305
           + N Y RA    + P   L V   +L+T   PDV + N +I+GF K G +++A  +   M
Sbjct: 124 LINCYRRA----RRPDLGLPVFGRLLRTGLGPDVFSYNALIDGFSKEGEVDKAHDLFYKM 179

Query: 306 VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLR 365
              +   P+ VT++++I GL     + +A  +L Q M   G  P  +TYN ++ G     
Sbjct: 180 -EEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQ-MVGAGVRPNNMTYNCLIHGYSTSG 237

Query: 366 RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYA 425
             +E+  VF  M    +V D       +  LC+  ++ EA+  +D +V      D   Y 
Sbjct: 238 MWKESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKPDVISYG 297

Query: 426 AMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN 485
           A++ G   +G I    +    +V  GV P+   +N +I+   +L M  ++  +  +M K 
Sbjct: 298 ALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQ 357

Query: 486 GLNPDAVTW 494
           G+NPD +T+
Sbjct: 358 GVNPDIITF 366



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 72/341 (21%), Positives = 148/341 (43%), Gaps = 51/341 (14%)

Query: 171 TPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQ-FGYL------PSEHTYKVLVEGLCGES 223
            P++ +YN +++       C R  +  + G+  FG L      P   +Y  L++G   E 
Sbjct: 115 APTIYTYNILIN-------CYRRARRPDLGLPVFGRLLRTGLGPDVFSYNALIDGFSKEG 167

Query: 224 DLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLN 283
           +++KA                                    ++   M +    P+V+T +
Sbjct: 168 EVDKAH-----------------------------------DLFYKMEEQGIMPNVVTYS 192

Query: 284 TVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMP 343
           ++ING CK   +++A +VL  MV G    P+ +T+  +I G    G  +E++ + ++ M 
Sbjct: 193 SLINGLCKTKEMDKAERVLRQMV-GAGVRPNNMTYNCLIHGYSTSGMWKESVRV-FKEMS 250

Query: 344 QRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLD 403
                P +   N+ +  L +  R++EA+++F+ M+  G   D  +Y  ++ G   +  + 
Sbjct: 251 SSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKPDVISYGALLHGYATAGCIA 310

Query: 404 EAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463
                ++ +V    + D +V+  +I    R G + +++    ++   GV P+I+ ++ VI
Sbjct: 311 GMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVI 370

Query: 464 DGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNR 504
              C+L    +A +    M   G+ PD   +  L +   NR
Sbjct: 371 SAFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSCLIQGQCNR 411



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 95/199 (47%), Gaps = 3/199 (1%)

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           D  A    AP   T+  +I       R    L +  +++ + G  P + +YNA++ G  +
Sbjct: 107 DRCACPEAAPTIYTYNILINCYRRARRPDLGLPVFGRLL-RTGLGPDVFSYNALIDGFSK 165

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
              V++A ++F  M   G++ +  TY+ +I+GLC++ ++D+A+R    +V      +N  
Sbjct: 166 EGEVDKAHDLFYKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAGVRPNNMT 225

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y  +I G   SG   E+V    E+  S + P++   N  +   CK    +EA  I   M 
Sbjct: 226 YNCLIHGYSTSGMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMV 285

Query: 484 KNGLNPDAVTWRILDKLHG 502
             G  PD +++  L  LHG
Sbjct: 286 LKGPKPDVISYGAL--LHG 302


>gi|32489924|emb|CAE05516.1| OSJNBa0038P21.9 [Oryza sativa Japonica Group]
          Length = 825

 Score =  205 bits (522), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 146/534 (27%), Positives = 258/534 (48%), Gaps = 49/534 (9%)

Query: 6   GLSRVGE---AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           G S+ GE   AH LF+ M+ +G +PNVV+Y++LI+G C+T EMD A +V  +M   GV P
Sbjct: 233 GFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAGVRP 292

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           N++TY+ L+ G   T  + + +V +FK         D+   N+     + +LC+ G + E
Sbjct: 293 NNMTYNCLIHG-YSTSGMWKESVRVFKEMSSSLLVPDVGNCNS----FMTALCKHGRIKE 347

Query: 123 VFRIAEDM----PQGKSVN-------------------------------EEFACGHMID 147
              I + M    P+   ++                               +      +I+
Sbjct: 348 ARDIFDSMVLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLIN 407

Query: 148 SLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLP 207
           +  R G    +  +   M K+G+ P ++++++++   C+ G    A +     I  G  P
Sbjct: 408 AYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHMIDTGVPP 467

Query: 208 SEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR-TRICNIYLRALCLIKNPTELLNV 266
               Y  L++G C   DL KA++++  MLSK       +     +  LC      E  +V
Sbjct: 468 DTAVYSCLIQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFTSIINNLCKEGRVAEGKDV 527

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
           +  ++ T  +P++IT N++++G+C +G ++EA+ +L+ M +     PD  T+ T++ G  
Sbjct: 528 VDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGV-EPDIYTYNTLVDGYC 586

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
             GRI +AL L   ++ +R  +   V+YN +L GLF+ RR   AKE+F+ M+  G+    
Sbjct: 587 KHGRIDDALTLFRDMLHKR-VTLTSVSYNIILHGLFQARRTIVAKEMFHEMIESGMAVSI 645

Query: 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE 446
            TYA V+ GLC +N  DEA    + +   +   D   +  +I+ + + G+  EA      
Sbjct: 646 HTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIRAMFKVGRRQEAKELFAA 705

Query: 447 LVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKL 500
           +   G+ P I+ Y V+I    K     +A  +   M K+   PD+   RIL+++
Sbjct: 706 ISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSMEKSSCTPDS---RILNEI 756



 Score =  174 bits (442), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 126/507 (24%), Positives = 232/507 (45%), Gaps = 43/507 (8%)

Query: 27  PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVL 86
           P+V SY  LI G+ + GE+D A+ +F +M   G++PN +TYS L+ G+ +T+++++A  +
Sbjct: 222 PDVFSYNALIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERV 281

Query: 87  MFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMI 146
           +     R      +  NN  +  L+      G   E  R+ ++M     V +   C   +
Sbjct: 282 L-----RQMVGAGVRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSLLVPDVGNCNSFM 336

Query: 147 DSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG------------------ 188
            +LC+ GR   A  +   M  +G  P ++SY +++HG    G                  
Sbjct: 337 TALCKHGRIKEARDIFDSMVLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVV 396

Query: 189 ----------------GCM-RAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKV 231
                           G M ++  + E+  + G  P   T+  ++   C    L+ A + 
Sbjct: 397 PDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEK 456

Query: 232 LQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNT-VINGFC 290
              M+       T + +  ++  C  ++  +   ++  ML     P  I   T +IN  C
Sbjct: 457 FNHMIDTGVPPDTAVYSCLIQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFTSIINNLC 516

Query: 291 KMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG 350
           K GR+ E   V+ D++      P+ +TF +++ G   VG ++EA+ LL   M   G  P 
Sbjct: 517 KEGRVAEGKDVV-DLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLL-DSMESVGVEPD 574

Query: 351 IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD 410
           I TYN ++ G  +  R+++A  +F  ML   V   S +Y I++ GL ++ +   AK  + 
Sbjct: 575 IYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTIVAKEMFH 634

Query: 411 DIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLS 470
           +++        + YA ++ GLCR+    EA   L +L    V  +I+ +N+VI    K+ 
Sbjct: 635 EMIESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIRAMFKVG 694

Query: 471 MKREAYQILREMRKNGLNPDAVTWRIL 497
            ++EA ++   +   GL P  +T+R++
Sbjct: 695 RRQEAKELFAAISTYGLVPTILTYRVM 721



 Score =  151 bits (381), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 98/370 (26%), Positives = 178/370 (48%), Gaps = 44/370 (11%)

Query: 167 KRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLE 226
           + GL P + SYN+++ G  K G   +A+ L  +  + G +P+  TY  L+ GLC   +++
Sbjct: 217 RTGLGPDVFSYNALIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSLINGLCKTKEMD 276

Query: 227 KARKVLQFMLSK-----------------------------KDVDRTRI------CNIYL 251
           KA +VL+ M+                               K++  + +      CN ++
Sbjct: 277 KAERVLRQMVGAGVRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSLLVPDVGNCNSFM 336

Query: 252 RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC 311
            ALC      E  ++   M+    +PDVI+   +++G+   G I     + N MV  +  
Sbjct: 337 TALCKHGRIKEARDIFDSMVLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVC-EGV 395

Query: 312 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK 371
            PD   F T+I     +G + ++L L+++ M ++G +P I+T++ V+    RL R+++A 
Sbjct: 396 VPDRHVFNTLINAYARLGMMDKSL-LMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAM 454

Query: 372 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI----VWPSNIHDNYVYAAM 427
           E FN M+  GV  D+  Y+ +I G C    L +AK    D+    + P  I     + ++
Sbjct: 455 EKFNHMIDTGVPPDTAVYSCLIQGQCNRRDLVKAKELISDMLSKGIPPPCIK---FFTSI 511

Query: 428 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
           I  LC+ G++ E    +  ++ +G  PN++ +N ++DG C +   +EA  +L  M   G+
Sbjct: 512 INNLCKEGRVAEGKDVVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGV 571

Query: 488 NPDAVTWRIL 497
            PD  T+  L
Sbjct: 572 EPDIYTYNTL 581



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 119/249 (47%), Gaps = 6/249 (2%)

Query: 246 ICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM 305
           + N Y RA    + P   L V   +L+T   PDV + N +I+GF K G +++A  +   M
Sbjct: 195 LINCYRRA----RRPDLGLPVFGRLLRTGLGPDVFSYNALIDGFSKEGEVDKAHDLFYKM 250

Query: 306 VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLR 365
              +   P+ VT++++I GL     + +A  +L Q M   G  P  +TYN ++ G     
Sbjct: 251 -EEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQ-MVGAGVRPNNMTYNCLIHGYSTSG 308

Query: 366 RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYA 425
             +E+  VF  M    +V D       +  LC+  ++ EA+  +D +V      D   Y 
Sbjct: 309 MWKESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKPDVISYG 368

Query: 426 AMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN 485
           A++ G   +G I    +    +V  GV P+   +N +I+   +L M  ++  +  +M K 
Sbjct: 369 ALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQ 428

Query: 486 GLNPDAVTW 494
           G+NPD +T+
Sbjct: 429 GVNPDIITF 437



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 72/341 (21%), Positives = 148/341 (43%), Gaps = 51/341 (14%)

Query: 171 TPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQ-FGYL------PSEHTYKVLVEGLCGES 223
            P++ +YN +++       C R  +  + G+  FG L      P   +Y  L++G   E 
Sbjct: 186 APTIYTYNILIN-------CYRRARRPDLGLPVFGRLLRTGLGPDVFSYNALIDGFSKEG 238

Query: 224 DLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLN 283
           +++KA                                    ++   M +    P+V+T +
Sbjct: 239 EVDKAH-----------------------------------DLFYKMEEQGIMPNVVTYS 263

Query: 284 TVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMP 343
           ++ING CK   +++A +VL  MV G    P+ +T+  +I G    G  +E++ + ++ M 
Sbjct: 264 SLINGLCKTKEMDKAERVLRQMV-GAGVRPNNMTYNCLIHGYSTSGMWKESVRV-FKEMS 321

Query: 344 QRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLD 403
                P +   N+ +  L +  R++EA+++F+ M+  G   D  +Y  ++ G   +  + 
Sbjct: 322 SSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKPDVISYGALLHGYATAGCIA 381

Query: 404 EAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463
                ++ +V    + D +V+  +I    R G + +++    ++   GV P+I+ ++ VI
Sbjct: 382 GMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVI 441

Query: 464 DGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNR 504
              C+L    +A +    M   G+ PD   +  L +   NR
Sbjct: 442 SAFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSCLIQGQCNR 482



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 95/199 (47%), Gaps = 3/199 (1%)

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           D  A    AP   T+  +I       R    L +  +++ + G  P + +YNA++ G  +
Sbjct: 178 DRCACPEAAPTIYTYNILINCYRRARRPDLGLPVFGRLL-RTGLGPDVFSYNALIDGFSK 236

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
              V++A ++F  M   G++ +  TY+ +I+GLC++ ++D+A+R    +V      +N  
Sbjct: 237 EGEVDKAHDLFYKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAGVRPNNMT 296

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y  +I G   SG   E+V    E+  S + P++   N  +   CK    +EA  I   M 
Sbjct: 297 YNCLIHGYSTSGMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMV 356

Query: 484 KNGLNPDAVTWRILDKLHG 502
             G  PD +++  L  LHG
Sbjct: 357 LKGPKPDVISYGAL--LHG 373


>gi|414869870|tpg|DAA48427.1| TPA: hypothetical protein ZEAMMB73_860756 [Zea mays]
 gi|414869871|tpg|DAA48428.1| TPA: hypothetical protein ZEAMMB73_860756 [Zea mays]
          Length = 741

 Score =  205 bits (522), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 149/523 (28%), Positives = 246/523 (47%), Gaps = 31/523 (5%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LCG  R GEA  L  D   +G VPNV  Y  LI GYC TG++++A  +F  M+  G LPN
Sbjct: 189 LCGAGRAGEAVALLTDAMGKGFVPNVAVYNALIDGYCSTGDLELAIDIFKGMQSKGCLPN 248

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             TY+ L+ G  ++  VERA VL    + RM E   L+ N   +  L+   C EG++   
Sbjct: 249 VRTYTQLICGFCKSGKVERAMVL----YSRMIEA-GLAPNVVTYTTLIQGQCSEGHLEHA 303

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           FR+   M        E+ C  +ID+LC+ GR   A + +  + ++G+  + V Y S++  
Sbjct: 304 FRLLHSMEACGLAPNEWTCLVLIDALCKHGRIEEAQQFLGSLVQKGIKVNQVIYTSMIDA 363

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK----K 239
           LCK G    A+ L+++ I  G++P  H Y  L++GLC E+ L +A  +L  M+       
Sbjct: 364 LCKSGKFDGAHNLMQKIITEGFVPDAHMYSSLIDGLCRENKLLEAISLLNDMIESGVQAN 423

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
            V  T + + +LR      +P  + +    M     +PDV+T    I  +C+ GR+E+A 
Sbjct: 424 AVPFTILIDKHLREF-RSDSPKMISDR---MAAAGVKPDVVTYTVFIRSYCQDGRMEDAE 479

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
            ++  M+      P+  T+ T+I G  N+G + +A + L + M   G  P   +Y  +L 
Sbjct: 480 SMMIQMIDHGV-RPNLTTYNTLIKGYANLGLVSQAFSSL-KNMIDNGCKPNDESYTVLLG 537

Query: 360 ----------------GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLD 403
                            L+++  ++  +E+   ++ +   + S  Y   I  L + ++L+
Sbjct: 538 LLLKKNSYHDLVADSISLWKIVDMKVLEELLEEVIKLQCSSASYVYDCFIRCLSKVDRLE 597

Query: 404 EAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463
           EAK F   +   +      VY  MI+   R   + EA+ FL  +V     P +  Y  +I
Sbjct: 598 EAKSFLVGMQSANLTPSEDVYTCMIECCYRMKLLKEALRFLDSMVKRNYLPRLESYRFII 657

Query: 464 DGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
              C+      A  I  ++     N D + W+IL      +GN
Sbjct: 658 CALCEEGSFHTAKSIFGDILSKEYNRDEIAWKILIDGLLQKGN 700



 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 131/495 (26%), Positives = 209/495 (42%), Gaps = 80/495 (16%)

Query: 14  HKLFFDMKS---RGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVL 70
           H +  DM+S   R  V N+ +YTTLI+ YC  G++  A +    +   G+ P+S  Y+  
Sbjct: 56  HGMLSDMESLAARMPVRNLHTYTTLINAYCHAGDLPAAKRHLSSLLRAGLAPDSHAYTSF 115

Query: 71  VRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDM 130
           V G                                         CR G      R+   M
Sbjct: 116 VLGY----------------------------------------CRTGLFAHACRLFLLM 135

Query: 131 PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGC 190
           PQ       F    ++  LC +G    A  V   M   G  P    Y+ +VHGLC  G  
Sbjct: 136 PQRGCARTPFTYAALLQGLCGAGMVREAMAVFAGMWPDGCAPDSHVYSIMVHGLCGAGRA 195

Query: 191 MRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIY 250
             A  LL + +  G++P+   Y  L++G C   DLE A  + + M SK            
Sbjct: 196 GEAVALLTDAMGKGFVPNVAVYNALIDGYCSTGDLELAIDIFKGMQSKG----------- 244

Query: 251 LRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKF 310
                                   C P+V T   +I GFCK G++E A+ + + M+    
Sbjct: 245 ------------------------CLPNVRTYTQLICGFCKSGKVERAMVLYSRMIEAGL 280

Query: 311 CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEA 370
            AP+ VT+TT+I G  + G ++ A  LL+  M   G +P   T   ++  L +  R+EEA
Sbjct: 281 -APNVVTYTTLIQGQCSEGHLEHAFRLLHS-MEACGLAPNEWTCLVLIDALCKHGRIEEA 338

Query: 371 KEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKG 430
           ++    ++  G+  +   Y  +ID LC+S + D A      I+    + D ++Y+++I G
Sbjct: 339 QQFLGSLVQKGIKVNQVIYTSMIDALCKSGKFDGAHNLMQKIITEGFVPDAHMYSSLIDG 398

Query: 431 LCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD 490
           LCR  K+ EA+  L ++++SGV  N V + ++ID   +         I   M   G+ PD
Sbjct: 399 LCRENKLLEAISLLNDMIESGVQANAVPFTILIDKHLREFRSDSPKMISDRMAAAGVKPD 458

Query: 491 AVTWRILDKLHGNRG 505
            VT+ +  + +   G
Sbjct: 459 VVTYTVFIRSYCQDG 473



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 108/393 (27%), Positives = 194/393 (49%), Gaps = 6/393 (1%)

Query: 109 NLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKR 168
            L+ +L R G ++++  +A  MP    V        +I++ C +G    A R +  + + 
Sbjct: 48  TLLMALARHGMLSDMESLAARMP----VRNLHTYTTLINAYCHAGDLPAAKRHLSSLLRA 103

Query: 169 GLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKA 228
           GL P   +Y S V G C+ G    A +L     Q G   +  TY  L++GLCG   + +A
Sbjct: 104 GLAPDSHAYTSFVLGYCRTGLFAHACRLFLLMPQRGCARTPFTYAALLQGLCGAGMVREA 163

Query: 229 RKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVING 288
             V   M        + + +I +  LC      E + +L   +     P+V   N +I+G
Sbjct: 164 MAVFAGMWPDGCAPDSHVYSIMVHGLCGAGRAGEAVALLTDAMGKGFVPNVAVYNALIDG 223

Query: 289 FCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYS 348
           +C  G +E A+ +   M + K C P+  T+T +I G    G+++ A+ +LY  M + G +
Sbjct: 224 YCSTGDLELAIDIFKGMQS-KGCLPNVRTYTQLICGFCKSGKVERAM-VLYSRMIEAGLA 281

Query: 349 PGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRF 408
           P +VTY  +++G      +E A  + + M   G+  +  T  ++ID LC+  +++EA++F
Sbjct: 282 PNVVTYTTLIQGQCSEGHLEHAFRLLHSMEACGLAPNEWTCLVLIDALCKHGRIEEAQQF 341

Query: 409 WDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACK 468
              +V      +  +Y +MI  LC+SGK   A + + +++  G  P+   Y+ +IDG C+
Sbjct: 342 LGSLVQKGIKVNQVIYTSMIDALCKSGKFDGAHNLMQKIITEGFVPDAHMYSSLIDGLCR 401

Query: 469 LSMKREAYQILREMRKNGLNPDAVTWRILDKLH 501
            +   EA  +L +M ++G+  +AV + IL   H
Sbjct: 402 ENKLLEAISLLNDMIESGVQANAVPFTILIDKH 434



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 127/543 (23%), Positives = 225/543 (41%), Gaps = 56/543 (10%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C       A +LF  M  RG      +Y  L+ G C  G +  A  VF  M   G  P+S
Sbjct: 120 CRTGLFAHACRLFLLMPQRGCARTPFTYAALLQGLCGAGMVREAMAVFAGMWPDGCAPDS 179

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
             YS++V G+       RA   +  L + M   +    N A +  L+D  C  G +    
Sbjct: 180 HVYSIMVHGLC---GAGRAGEAVALLTDAMG--KGFVPNVAVYNALIDGYCSTGDLELAI 234

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
            I + M     +        +I   C+SG+   A  +   M + GL P++V+Y +++ G 
Sbjct: 235 DIFKGMQSKGCLPNVRTYTQLICGFCKSGKVERAMVLYSRMIEAGLAPNVVTYTTLIQGQ 294

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
           C  G    A++LL      G  P+E T  VL++ LC    +E+A++ L  ++ K      
Sbjct: 295 CSEGHLEHAFRLLHSMEACGLAPNEWTCLVLIDALCKHGRIEEAQQFLGSLVQKGIKVNQ 354

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
            I    + ALC         N++  ++     PD    +++I+G C+  ++ EA+ +LND
Sbjct: 355 VIYTSMIDALCKSGKFDGAHNLMQKIITEGFVPDAHMYSSLIDGLCRENKLLEAISLLND 414

Query: 305 MV----------------------------------AGKFCAPDAVTFTTIIFGLLNVGR 330
           M+                                  A     PD VT+T  I      GR
Sbjct: 415 MIESGVQANAVPFTILIDKHLREFRSDSPKMISDRMAAAGVKPDVVTYTVFIRSYCQDGR 474

Query: 331 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYA 390
           +++A +++ Q M   G  P + TYN +++G   L  V +A      M+  G   +  +Y 
Sbjct: 475 MEDAESMMIQ-MIDHGVRPNLTTYNTLIKGYANLGLVSQAFSSLKNMIDNGCKPNDESYT 533

Query: 391 IVIDGLCESNQ----LDEAKRFW------------DDIVWPSNIHDNYVYAAMIKGLCRS 434
           +++  L + N     + ++   W            ++++       +YVY   I+ L + 
Sbjct: 534 VLLGLLLKKNSYHDLVADSISLWKIVDMKVLEELLEEVIKLQCSSASYVYDCFIRCLSKV 593

Query: 435 GKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
            ++ EA  FL  +  + +TP+   Y  +I+   ++ + +EA + L  M K    P   ++
Sbjct: 594 DRLEEAKSFLVGMQSANLTPSEDVYTCMIECCYRMKLLKEALRFLDSMVKRNYLPRLESY 653

Query: 495 RIL 497
           R +
Sbjct: 654 RFI 656


>gi|255581786|ref|XP_002531694.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528670|gb|EEF30685.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 821

 Score =  205 bits (522), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 141/490 (28%), Positives = 241/490 (49%), Gaps = 17/490 (3%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   +V EA  +F  +      P+  +YT+LI G+CR  ++D A++VFD M   G  PN
Sbjct: 207 LCKKGKVQEAVLVFNKIFQFDLCPDAFTYTSLILGHCRNRKLDKAFEVFDRMVKDGCNPN 266

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           S+TYS L+ G+     +  A      + E M E+  +      +   + SLC  G V++ 
Sbjct: 267 SVTYSTLINGLCNEGRIGEA----MDMLEEMTEK-GIEPTVYTYTVPISSLCDIGRVDDA 321

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             +   M +            +I  L R+G+   A  + + M K GL P+ V+YN++++ 
Sbjct: 322 INLVRSMGKKGCSPSVQTYTAIISGLFRAGKMELAIGMYHKMLKEGLVPNTVTYNALINE 381

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LC  G    A ++ +     G L +  TY  +++GL G  D+EKA  V   ML       
Sbjct: 382 LCTEGRFGIALKIFDWMEGHGTLANAQTYNQIIKGLFGMDDIEKAMVVFNKMLKDGPSPT 441

Query: 244 TRICNIYL---RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
               N  +        + N T  L     M ++ C+PD  T   +I+GFCK G+++ A  
Sbjct: 442 VVTYNTLIVENLKRGYLNNATRFL---YMMKESNCEPDERTYCELISGFCKGGKLDSATS 498

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
              +M+     +P+  T+T +I G    G+I  AL+L ++ M + G S  I TYNA++ G
Sbjct: 499 FFYEMLKCGI-SPNQWTYTAMIDGYCKEGKIDVALSL-FERMEENGCSASIETYNAIISG 556

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L +  R  EA++    M   G+  ++ TY  +I+GLC++   + A + + ++   + + +
Sbjct: 557 LSKGNRFSEAEKFCAKMTEQGLQPNTITYTSLINGLCKNTATNLAFKIFHEMEKKNCLPN 616

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
            + Y ++I GLC+ GK+  A      L ++G  P I  Y+ ++ G C+     EA Q++ 
Sbjct: 617 AHTYTSLIYGLCQEGKVDAA----ERLTENGCEPTIDTYSTLVSGLCREGRSNEASQLVE 672

Query: 481 EMRKNGLNPD 490
            M++ GL+P 
Sbjct: 673 NMKEKGLSPS 682



 Score =  171 bits (434), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 129/489 (26%), Positives = 220/489 (44%), Gaps = 18/489 (3%)

Query: 4   LCGLSRVGE---AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           + GL R G+   A  ++  M   G VPN V+Y  LI+  C  G   +A K+FD M   G 
Sbjct: 344 ISGLFRAGKMELAIGMYHKMLKEGLVPNTVTYNALINELCTEGRFGIALKIFDWMEGHGT 403

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           L N+ TY+ +++G+    D+E+A V+  K+ +       ++ N     NL     + GY+
Sbjct: 404 LANAQTYNQIIKGLFGMDDIEKAMVVFNKMLKDGPSPTVVTYNTLIVENL-----KRGYL 458

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           N   R    M +     +E     +I   C+ G+   A+   Y M K G++P+  +Y ++
Sbjct: 459 NNATRFLYMMKESNCEPDERTYCELISGFCKGGKLDSATSFFYEMLKCGISPNQWTYTAM 518

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G CK G    A  L E   + G   S  TY  ++ GL   +   +A K    M  +  
Sbjct: 519 IDGYCKEGKIDVALSLFERMEENGCSASIETYNAIISGLSKGNRFSEAEKFCAKMTEQGL 578

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVF--MLQTQCQPDVITLNTVINGFCKMGRIEEA 298
              T      +  LC  KN    L   +F  M +  C P+  T  ++I G C+ G+++ A
Sbjct: 579 QPNTITYTSLINGLC--KNTATNLAFKIFHEMEKKNCLPNAHTYTSLIYGLCQEGKVDAA 636

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
            ++  +      C P   T++T++ GL   GR  EA  L+ + M ++G SP +  Y ++L
Sbjct: 637 ERLTENG-----CEPTIDTYSTLVSGLCREGRSNEASQLV-ENMKEKGLSPSMEIYCSLL 690

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
               +  +V+ A E+FN M   G       Y ++I  LC  ++ +EA   +  ++     
Sbjct: 691 VAHCKSLKVDCALEIFNLMAVKGFQPHLFIYKVLICALCGVSRAEEALNIFQSLLKKQWN 750

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI 478
            D  V+  ++ GL + G     + FLY +     TP++  Y ++     K+       QI
Sbjct: 751 SDLIVWTVLVDGLLQEGDSDLCMKFLYLMESRNCTPSLHTYIILARELSKVGKSIGTDQI 810

Query: 479 LREMRKNGL 487
              +R+  L
Sbjct: 811 GNRLREVSL 819



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 108/408 (26%), Positives = 190/408 (46%), Gaps = 3/408 (0%)

Query: 106 AFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVM 165
            F  +++ LC++G V E   +   + Q     + F    +I   CR+ +   A  V   M
Sbjct: 199 TFNTMINILCKKGKVQEAVLVFNKIFQFDLCPDAFTYTSLILGHCRNRKLDKAFEVFDRM 258

Query: 166 RKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDL 225
            K G  P+ V+Y+++++GLC  G    A  +LEE  + G  P+ +TY V +  LC    +
Sbjct: 259 VKDGCNPNSVTYSTLINGLCNEGRIGEAMDMLEEMTEKGIEPTVYTYTVPISSLCDIGRV 318

Query: 226 EKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTV 285
           + A  +++ M  K      +     +  L         + +   ML+    P+ +T N +
Sbjct: 319 DDAINLVRSMGKKGCSPSVQTYTAIISGLFRAGKMELAIGMYHKMLKEGLVPNTVTYNAL 378

Query: 286 INGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQR 345
           IN  C  GR   ALK+  D + G     +A T+  II GL  +  I++A+ +++  M + 
Sbjct: 379 INELCTEGRFGIALKIF-DWMEGHGTLANAQTYNQIIKGLFGMDDIEKAM-VVFNKMLKD 436

Query: 346 GYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA 405
           G SP +VTYN ++    +   +  A      M       D  TY  +I G C+  +LD A
Sbjct: 437 GPSPTVVTYNTLIVENLKRGYLNNATRFLYMMKESNCEPDERTYCELISGFCKGGKLDSA 496

Query: 406 KRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDG 465
             F+ +++      + + Y AMI G C+ GKI  A+     + ++G + +I  YN +I G
Sbjct: 497 TSFFYEMLKCGISPNQWTYTAMIDGYCKEGKIDVALSLFERMEENGCSASIETYNAIISG 556

Query: 466 ACKLSMKREAYQILREMRKNGLNPDAVTW-RILDKLHGNRGNDFGLRI 512
             K +   EA +   +M + GL P+ +T+  +++ L  N   +   +I
Sbjct: 557 LSKGNRFSEAEKFCAKMTEQGLQPNTITYTSLINGLCKNTATNLAFKI 604



 Score =  151 bits (381), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 107/389 (27%), Positives = 172/389 (44%), Gaps = 40/389 (10%)

Query: 157 GASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLV 216
            A  V   +   G+ PSL+++N++++ LCK G    A  +  +  QF   P   TY  L+
Sbjct: 180 SAQNVYAQIFSSGVKPSLLTFNTMINILCKKGKVQEAVLVFNKIFQFDLCPDAFTYTSLI 239

Query: 217 EGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQ 276
            G C    L+KA +V   M+       +   +  +  LC      E +++L  M +   +
Sbjct: 240 LGHCRNRKLDKAFEVFDRMVKDGCNPNSVTYSTLINGLCNEGRIGEAMDMLEEMTEKGIE 299

Query: 277 PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALN 336
           P V T    I+  C +GR+++A+ ++  M   K C+P   T+T II GL   G+++ A+ 
Sbjct: 300 PTVYTYTVPISSLCDIGRVDDAINLVRSM-GKKGCSPSVQTYTAIISGLFRAGKMELAIG 358

Query: 337 LLYQVMPQRGYSPGIVTYNA-----------------------------------VLRGL 361
            +Y  M + G  P  VTYNA                                   +++GL
Sbjct: 359 -MYHKMLKEGLVPNTVTYNALINELCTEGRFGIALKIFDWMEGHGTLANAQTYNQIIKGL 417

Query: 362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
           F +  +E+A  VFN ML  G      TY  +I    +   L+ A RF   +   +   D 
Sbjct: 418 FGMDDIEKAMVVFNKMLKDGPSPTVVTYNTLIVENLKRGYLNNATRFLYMMKESNCEPDE 477

Query: 422 YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
             Y  +I G C+ GK+  A  F YE++  G++PN   Y  +IDG CK      A  +   
Sbjct: 478 RTYCELISGFCKGGKLDSATSFFYEMLKCGISPNQWTYTAMIDGYCKEGKIDVALSLFER 537

Query: 482 MRKNGLNPDAVTWR-ILDKLHGNRGNDFG 509
           M +NG +    T+  I+  L  ++GN F 
Sbjct: 538 MEENGCSASIETYNAIISGL--SKGNRFS 564



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 103/210 (49%), Gaps = 7/210 (3%)

Query: 291 KMGRIEEALKVLNDMVAGKFCAPDAV------TFTTIIFGLLNVGRIQEALNLLYQVMPQ 344
           K  R E+ LK + D + G   +   +      +F T++  L     +  A N+  Q+   
Sbjct: 132 KACRNEDELKRVTDFLHGISSSDSGLFGFTLYSFNTLLLQLGKFDMVTSAQNVYAQIF-S 190

Query: 345 RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 404
            G  P ++T+N ++  L +  +V+EA  VFN +    +  D+ TY  +I G C + +LD+
Sbjct: 191 SGVKPSLLTFNTMINILCKKGKVQEAVLVFNKIFQFDLCPDAFTYTSLILGHCRNRKLDK 250

Query: 405 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
           A   +D +V      ++  Y+ +I GLC  G+I EA+  L E+ + G+ P +  Y V I 
Sbjct: 251 AFEVFDRMVKDGCNPNSVTYSTLINGLCNEGRIGEAMDMLEEMTEKGIEPTVYTYTVPIS 310

Query: 465 GACKLSMKREAYQILREMRKNGLNPDAVTW 494
             C +    +A  ++R M K G +P   T+
Sbjct: 311 SLCDIGRVDDAINLVRSMGKKGCSPSVQTY 340



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 90/200 (45%), Gaps = 2/200 (1%)

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG--YSPGIVTYNA 356
           + +LN +V  K  AP       +I    N   ++   + L+ +       +   + ++N 
Sbjct: 108 VSMLNRLVKDKILAPADHVRILMIKACRNEDELKRVTDFLHGISSSDSGLFGFTLYSFNT 167

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416
           +L  L +   V  A+ V+  +   GV     T+  +I+ LC+  ++ EA   ++ I    
Sbjct: 168 LLLQLGKFDMVTSAQNVYAQIFSSGVKPSLLTFNTMINILCKKGKVQEAVLVFNKIFQFD 227

Query: 417 NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAY 476
              D + Y ++I G CR+ K+ +A      +V  G  PN V Y+ +I+G C      EA 
Sbjct: 228 LCPDAFTYTSLILGHCRNRKLDKAFEVFDRMVKDGCNPNSVTYSTLINGLCNEGRIGEAM 287

Query: 477 QILREMRKNGLNPDAVTWRI 496
            +L EM + G+ P   T+ +
Sbjct: 288 DMLEEMTEKGIEPTVYTYTV 307


>gi|242094006|ref|XP_002437493.1| hypothetical protein SORBIDRAFT_10g028090 [Sorghum bicolor]
 gi|241915716|gb|EER88860.1| hypothetical protein SORBIDRAFT_10g028090 [Sorghum bicolor]
          Length = 1039

 Score =  205 bits (522), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 134/525 (25%), Positives = 248/525 (47%), Gaps = 40/525 (7%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C    +  AH+ F  ++  G   +  +   L+ GYCRTG++  A  +   M   G   N 
Sbjct: 194 CKEGSLAIAHRYFRLLRESGMEMDTYTCNALLLGYCRTGDLRKACWLLMMMPLMGCRRNE 253

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
            +Y++L++G+  TR V  A VL+      M  ++  S N   +  L+  LC+EG +++  
Sbjct: 254 YSYTILIQGLCETRCVREALVLLL-----MMLQDGCSPNLHTYTLLIRGLCKEGRIHDAR 308

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
            + ++MP+   V   +    MID  C+SGR   A  +  +M   G  P   +YNS++HGL
Sbjct: 309 VLLDEMPRRGVVPSVWTYNAMIDGYCKSGRLKDALGIKTLMEGNGCNPDDWTYNSLIHGL 368

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
           C  G    A +LL   I  G+ P+  T+  ++ G C    ++ A +V   M+S K     
Sbjct: 369 CG-GKPDEAEELLNGAIARGFSPTVITFTNIINGYCKAEKIDDALRVKSIMISSKCKLDL 427

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
           +   + +  L       E  + L  +      P+V+   ++I+ +CK+G++  AL+V   
Sbjct: 428 QAYGVLISVLIKKHRLKEAKDTLNEIFANGLSPNVVIYTSIIDAYCKVGKVGAALEVFK- 486

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
           +   + C P+A T++++I+GL+   ++ +A+ L+ + M + G +PG++TY  +++G  + 
Sbjct: 487 LTEHEGCRPNAWTYSSLIYGLIQDQKLHKAMALITK-MQEDGITPGVITYTTLIQGQCKK 545

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRF-------WDDIVWPSN 417
              + A  +F  M   G+  D   Y ++ D LC+S + +EA  F          + + S 
Sbjct: 546 HEFDNAFRLFEMMEQNGLTPDEQAYNVLTDALCKSGRAEEAYSFLVKKGVVLTKVTYTSL 605

Query: 418 IH-------------------------DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGV 452
           +                          D++ Y+ +++ LC+  K++EA+  L ++   GV
Sbjct: 606 VDGFSKAGNTEFAAALIEKMVNEGCKADSHTYSVLLQALCKQKKLNEALSILDQMTLRGV 665

Query: 453 TPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
             NIV Y ++I    K      A  +  EM  +G  P A+T+ + 
Sbjct: 666 KGNIVAYTIIISEMIKEGKHDHAKSMFNEMISSGHKPSAITYTVF 710



 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 130/506 (25%), Positives = 238/506 (47%), Gaps = 26/506 (5%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           R+ EA     ++ + G  PNVV YT++I  YC+ G++  A +VF    H G  PN+ TYS
Sbjct: 442 RLKEAKDTLNEIFANGLSPNVVIYTSIIDAYCKVGKVGAALEVFKLTEHEGCRPNAWTYS 501

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
            L+ G+++ + + +A  L+ K+     +E+ ++     +  L+   C++   +  FR+ E
Sbjct: 502 SLIYGLIQDQKLHKAMALITKM-----QEDGITPGVITYTTLIQGQCKKHEFDNAFRLFE 556

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
            M Q     +E A   + D+LC+SGR   A      + K+G+  + V+Y S+V G  K G
Sbjct: 557 MMEQNGLTPDEQAYNVLTDALCKSGR---AEEAYSFLVKKGVVLTKVTYTSLVDGFSKAG 613

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
               A  L+E+ +  G     HTY VL++ LC +  L +A  +L  M  +          
Sbjct: 614 NTEFAAALIEKMVNEGCKADSHTYSVLLQALCKQKKLNEALSILDQMTLRGVKGNIVAYT 673

Query: 249 IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 308
           I +  +          ++   M+ +  +P  IT    I+ +CK+GRIEEA  ++ +M   
Sbjct: 674 IIISEMIKEGKHDHAKSMFNEMISSGHKPSAITYTVFISSYCKIGRIEEAGHLIGEMERN 733

Query: 309 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR--------- 359
              APD VT+   I G  ++G +  A + L + M      P   TY  +L+         
Sbjct: 734 GV-APDVVTYNVFINGCGHMGYMDCAFSTLKR-MIDASCEPNYWTYWLLLKHFLKMSLAN 791

Query: 360 -------GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI 412
                  G++   +++   ++   M+  G+   + TY+ +I G C++ +L+EA    D +
Sbjct: 792 AHYVDTSGMWNWIKLDTVWQLLERMVKHGLNPTAVTYSSIIAGFCKATRLEEACVLLDHM 851

Query: 413 VWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMK 472
           +      +  +Y  +IK  C      +A  F+  +++ G  P++  Y+ +I G C     
Sbjct: 852 LGKDISPNEEIYTMLIKCCCDIKLFEKAASFVTNMIECGFQPHLESYHYLITGLCDEGDY 911

Query: 473 REAYQILREMRKNGLNPDAVTWRILD 498
            +A  +  ++ +   N + V W+IL+
Sbjct: 912 DKAKALFCDLLEMDYNHNEVAWKILN 937



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 126/496 (25%), Positives = 214/496 (43%), Gaps = 11/496 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R+ +A  L  +M  RG VP+V +Y  +I GYC++G +  A  +   M   G  P+
Sbjct: 298 LCKEGRIHDARVLLDEMPRRGVVPSVWTYNAMIDGYCKSGRLKDALGIKTLMEGNGCNPD 357

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             TY+ L+ G+   +  E   +L   +          S     F N+++  C+   +++ 
Sbjct: 358 DWTYNSLIHGLCGGKPDEAEELLNGAI------ARGFSPTVITFTNIINGYCKAEKIDDA 411

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            R+   M   K   +  A G +I  L +  R   A   +  +   GL+P++V Y SI+  
Sbjct: 412 LRVKSIMISSKCKLDLQAYGVLISVLIKKHRLKEAKDTLNEIFANGLSPNVVIYTSIIDA 471

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK G    A ++ +     G  P+  TY  L+ GL  +  L KA  ++  M        
Sbjct: 472 YCKVGKVGAALEVFKLTEHEGCRPNAWTYSSLIYGLIQDQKLHKAMALITKMQEDGITPG 531

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                  ++  C          +   M Q    PD    N + +  CK GR EEA   L 
Sbjct: 532 VITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTDALCKSGRAEEAYSFL- 590

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
                K      VT+T+++ G    G  + A  L+ + M   G      TY+ +L+ L +
Sbjct: 591 ---VKKGVVLTKVTYTSLVDGFSKAGNTEFAAALI-EKMVNEGCKADSHTYSVLLQALCK 646

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
            +++ EA  + + M   GV  +   Y I+I  + +  + D AK  +++++   +      
Sbjct: 647 QKKLNEALSILDQMTLRGVKGNIVAYTIIISEMIKEGKHDHAKSMFNEMISSGHKPSAIT 706

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y   I   C+ G+I EA H + E+  +GV P++V YNV I+G   +     A+  L+ M 
Sbjct: 707 YTVFISSYCKIGRIEEAGHLIGEMERNGVAPDVVTYNVFINGCGHMGYMDCAFSTLKRMI 766

Query: 484 KNGLNPDAVTWRILDK 499
                P+  T+ +L K
Sbjct: 767 DASCEPNYWTYWLLLK 782



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 111/431 (25%), Positives = 202/431 (46%), Gaps = 8/431 (1%)

Query: 67  YSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRI 126
           Y++ +R +LR    E     M KL+ ++ +E  L  +   +  ++ + C+EG +    R 
Sbjct: 151 YNLALRSLLRFDMTEH----MGKLYSQLVQE-GLLPDTVTYNTMIMAYCKEGSLAIAHRY 205

Query: 127 AEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK 186
              + +     + + C  ++   CR+G    A  ++ +M   G   +  SY  ++ GLC+
Sbjct: 206 FRLLRESGMEMDTYTCNALLLGYCRTGDLRKACWLLMMMPLMGCRRNEYSYTILIQGLCE 265

Query: 187 HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRI 246
                 A  LL   +Q G  P+ HTY +L+ GLC E  +  AR +L  M  +  V     
Sbjct: 266 TRCVREALVLLLMMLQDGCSPNLHTYTLLIRGLCKEGRIHDARVLLDEMPRRGVVPSVWT 325

Query: 247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV 306
            N  +   C      + L +   M    C PD  T N++I+G C  G+ +EA ++LN  +
Sbjct: 326 YNAMIDGYCKSGRLKDALGIKTLMEGNGCNPDDWTYNSLIHGLCG-GKPDEAEELLNGAI 384

Query: 307 AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 366
           A  F +P  +TFT II G     +I +AL  +  +M        +  Y  ++  L +  R
Sbjct: 385 ARGF-SPTVITFTNIINGYCKAEKIDDALR-VKSIMISSKCKLDLQAYGVLISVLIKKHR 442

Query: 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAA 426
           ++EAK+  N +   G+  +   Y  +ID  C+  ++  A   +          + + Y++
Sbjct: 443 LKEAKDTLNEIFANGLSPNVVIYTSIIDAYCKVGKVGAALEVFKLTEHEGCRPNAWTYSS 502

Query: 427 MIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG 486
           +I GL +  K+H+A+  + ++ + G+TP ++ Y  +I G CK      A+++   M +NG
Sbjct: 503 LIYGLIQDQKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNG 562

Query: 487 LNPDAVTWRIL 497
           L PD   + +L
Sbjct: 563 LTPDEQAYNVL 573



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 133/545 (24%), Positives = 231/545 (42%), Gaps = 97/545 (17%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C   R+ +A  +   M+  G  P+  +Y +LIHG C  G+ D A ++ +     G 
Sbjct: 330 IDGYCKSGRLKDALGIKTLMEGNGCNPDDWTYNSLIHGLC-GGKPDEAEELLNGAIARGF 388

Query: 61  LPNSLTYSVLVRGVLRTRDVERA-----------------------NVLMFKLWERMKEE 97
            P  +T++ ++ G  +   ++ A                       +VL+ K   R+KE 
Sbjct: 389 SPTVITFTNIINGYCKAEKIDDALRVKSIMISSKCKLDLQAYGVLISVLIKK--HRLKEA 446

Query: 98  ED---------LSVNNAAFANLVDSLCREGYVN---EVFRIAEDMPQGKSVNEEFACGHM 145
           +D         LS N   + +++D+ C+ G V    EVF++ E   +G   N  +    +
Sbjct: 447 KDTLNEIFANGLSPNVVIYTSIIDAYCKVGKVGAALEVFKLTEH--EGCRPN-AWTYSSL 503

Query: 146 IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY 205
           I  L +  + H A  ++  M++ G+TP +++Y +++ G CK      A++L E   Q G 
Sbjct: 504 IYGLIQDQKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGL 563

Query: 206 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 265
            P E  Y VL + LC     E+A       L KK V  T+                    
Sbjct: 564 TPDEQAYNVLTDALCKSGRAEEAYS----FLVKKGVVLTK-------------------- 599

Query: 266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 325
                         +T  ++++GF K G  E A  ++  MV  + C  D+ T++ ++  L
Sbjct: 600 --------------VTYTSLVDGFSKAGNTEFAAALIEKMV-NEGCKADSHTYSVLLQAL 644

Query: 326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 385
               ++ EAL++L Q M  RG    IV Y  ++  + +  + + AK +FN M+  G    
Sbjct: 645 CKQKKLNEALSILDQ-MTLRGVKGNIVAYTIIISEMIKEGKHDHAKSMFNEMISSGHKPS 703

Query: 386 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY 445
           + TY + I   C+  +++EA     ++       D   Y   I G    G +  A   L 
Sbjct: 704 AITYTVFISSYCKIGRIEEAGHLIGEMERNGVAPDVVTYNVFINGCGHMGYMDCAFSTLK 763

Query: 446 ELVDSGVTPNIVCYNVVIDGACKLSMKREAY----------------QILREMRKNGLNP 489
            ++D+   PN   Y +++    K+S+    Y                Q+L  M K+GLNP
Sbjct: 764 RMIDASCEPNYWTYWLLLKHFLKMSLANAHYVDTSGMWNWIKLDTVWQLLERMVKHGLNP 823

Query: 490 DAVTW 494
            AVT+
Sbjct: 824 TAVTY 828



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 76/342 (22%), Positives = 142/342 (41%), Gaps = 32/342 (9%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +  LC   ++ EA  +   M  RG   N+V+YT +I    + G+ D A  +F+EM   G 
Sbjct: 641 LQALCKQKKLNEALSILDQMTLRGVKGNIVAYTIIISEMIKEGKHDHAKSMFNEMISSGH 700

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNA-------------AF 107
            P+++TY+V +    +   +E A  L+ ++ ER     D+   N              AF
Sbjct: 701 KPSAITYTVFISSYCKIGRIEEAGHLIGEM-ERNGVAPDVVTYNVFINGCGHMGYMDCAF 759

Query: 108 ANL---VDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSG-----RNHGAS 159
           + L   +D+ C   Y      +   +          A  H +D+   SG     +     
Sbjct: 760 STLKRMIDASCEPNYWTYWLLLKHFLKM------SLANAHYVDT---SGMWNWIKLDTVW 810

Query: 160 RVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGL 219
           +++  M K GL P+ V+Y+SI+ G CK      A  LL+  +     P+E  Y +L++  
Sbjct: 811 QLLERMVKHGLNPTAVTYSSIIAGFCKATRLEEACVLLDHMLGKDISPNEEIYTMLIKCC 870

Query: 220 CGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDV 279
           C     EKA   +  M+           +  +  LC   +  +   +   +L+     + 
Sbjct: 871 CDIKLFEKAASFVTNMIECGFQPHLESYHYLITGLCDEGDYDKAKALFCDLLEMDYNHNE 930

Query: 280 ITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTI 321
           +    + +G  K G ++   ++L+ M   + C  D+ T++ +
Sbjct: 931 VAWKILNDGLLKAGHVDICSQLLSAM-ENRHCRIDSETYSMV 971


>gi|449493486|ref|XP_004159312.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g22960, mitochondrial-like [Cucumis sativus]
          Length = 772

 Score =  205 bits (522), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 140/499 (28%), Positives = 242/499 (48%), Gaps = 20/499 (4%)

Query: 10  VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSV 69
           + +A  ++  M+  G  P VV+Y T++  YC+ G +D A ++  EM+  G  PN +TY+V
Sbjct: 196 LSKAKNVYGMMEQFGIKPTVVTYNTMLDSYCKEGRVDQALELLSEMQERGCYPNDVTYNV 255

Query: 70  LVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAED 129
           LV G+ +  ++E+A  L+ ++         L+V+   +  L++  C++G   E F + E+
Sbjct: 256 LVNGLSKKGELEQAKGLIEEMLN-----SGLNVSAYTYNPLINGFCQKGLFVEAFDLVEE 310

Query: 130 MPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG 189
           M   ++         ++  LC+  +  G       M K   TP +VS+NS+++G C+ G 
Sbjct: 311 MVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKFTPDIVSFNSLLYGYCRTGC 370

Query: 190 CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNI 249
              A+ L +E      +P+  TY  L+ GLC    L+ A +     L K+  D+    +I
Sbjct: 371 ISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDAALR-----LKKEMTDQGLFPDI 425

Query: 250 YLRALCLIKNPTELLNVLVF------MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
           +   + L+    +L  V +       ML    +PD    NT I G  K+     A  +  
Sbjct: 426 FTYTI-LVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNTRIVGEMKIADTSVAFSMQE 484

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           +M+A  F  PD +T+   +  L   G  +EA +LL + M   G  P  VTY +++ G  +
Sbjct: 485 EMLAAGF-PPDVITYNVFVHALCQQGNFEEACDLL-ENMVSDGLIPDHVTYTSIINGFVK 542

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
              + +A+EVFN ML  GV     TY ++I        LD A  ++  ++  S   +   
Sbjct: 543 NGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPANVIT 602

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y A+I GLC + ++ EA  +  E+ + G+ PN   Y ++I+ +C +    EA ++ REM 
Sbjct: 603 YNAIINGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILINESCNMGYWEEALRLYREML 662

Query: 484 KNGLNPDAVTWRI-LDKLH 501
              + PD+ T  + L  LH
Sbjct: 663 DRKIQPDSFTHSVFLKNLH 681



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 128/463 (27%), Positives = 223/463 (48%), Gaps = 7/463 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C   RV +A +L  +M+ RG  PN V+Y  L++G  + GE++ A  + +EM + G+
Sbjct: 222 LDSYCKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGL 281

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             ++ TY+ L+ G  +      A    F L E M          + +  L+  LC+   V
Sbjct: 282 NVSAYTYNPLINGFCQKGLFVEA----FDLVEEMVNRRAFPT-LSTYNTLMYGLCKWVQV 336

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
             V     DM + K   +  +   ++   CR+G    A  +   ++ R L P++++YN++
Sbjct: 337 TGVRLRFSDMLKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTL 396

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +HGLC  G    A +L +E    G  P   TY +LV G      +  AR     MLSK  
Sbjct: 397 IHGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGL 456

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                  N  +     I + +   ++   ML     PDVIT N  ++  C+ G  EEA  
Sbjct: 457 KPDRFAYNTRIVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEACD 516

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +L +MV+     PD VT+T+II G +  G +++A   ++  M  +G +P +VTY  ++  
Sbjct: 517 LLENMVSDGL-IPDHVTYTSIINGFVKNGHLRKARE-VFNEMLSKGVAPSVVTYTVLIHA 574

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
               + ++ A   F+ ML   V A+  TY  +I+GLC + ++DEA +++D++     + +
Sbjct: 575 HAAKQMLDLAFMYFSKMLEKSVPANVITYNAIINGLCMTRRMDEAYKYFDEMEEKGILPN 634

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463
            + Y  +I   C  G   EA+    E++D  + P+   ++V +
Sbjct: 635 KFSYTILINESCNMGYWEEALRLYREMLDRKIQPDSFTHSVFL 677



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 103/371 (27%), Positives = 167/371 (45%), Gaps = 7/371 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M  LC   +V      F DM      P++VS+ +L++GYCRTG +  A+ +FDE++   +
Sbjct: 327 MYGLCKWVQVTGVRLRFSDMLKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDL 386

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P  +TY+ L+ G+     ++ A     +L + M  ++ L  +   +  LV+   + GYV
Sbjct: 387 VPTVITYNTLIHGLCMWGYLDAA----LRLKKEMT-DQGLFPDIFTYTILVNGCFKLGYV 441

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +       +M       + FA    I    +      A  +   M   G  P +++YN  
Sbjct: 442 SMARGFFNEMLSKGLKPDRFAYNTRIVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVF 501

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           VH LC+ G    A  LLE  +  G +P   TY  ++ G      L KAR+V   MLSK  
Sbjct: 502 VHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEMLSKGV 561

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                   + + A    +           ML+     +VIT N +ING C   R++EA K
Sbjct: 562 APSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPANVITYNAIINGLCMTRRMDEAYK 621

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
             ++M   K   P+  ++T +I    N+G  +EAL  LY+ M  R   P   T++  L+ 
Sbjct: 622 YFDEM-EEKGILPNKFSYTILINESCNMGYWEEALR-LYREMLDRKIQPDSFTHSVFLKN 679

Query: 361 LFRLRRVEEAK 371
           L R  +V   +
Sbjct: 680 LHRDYQVHAVQ 690



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 95/349 (27%), Positives = 164/349 (46%), Gaps = 37/349 (10%)

Query: 158 ASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVE 217
           A  V  +M + G+ P++V+YN+++   CK G   +A +LL E  + G  P++ TY VLV 
Sbjct: 199 AKNVYGMMEQFGIKPTVVTYNTMLDSYCKEGRVDQALELLSEMQERGCYPNDVTYNVLVN 258

Query: 218 GLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQP 277
           GL  + +LE+A+ +++ ML+                          LNV  +        
Sbjct: 259 GLSKKGELEQAKGLIEEMLNSG------------------------LNVSAY-------- 286

Query: 278 DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNL 337
              T N +INGFC+ G   EA  ++ +MV  +   P   T+ T+++GL    ++   + L
Sbjct: 287 ---TYNPLINGFCQKGLFVEAFDLVEEMVNRR-AFPTLSTYNTLMYGLCKWVQVT-GVRL 341

Query: 338 LYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLC 397
            +  M +  ++P IV++N++L G  R   + EA  +F+ +    +V    TY  +I GLC
Sbjct: 342 RFSDMLKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLC 401

Query: 398 ESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIV 457
               LD A R   ++       D + Y  ++ G  + G +  A  F  E++  G+ P+  
Sbjct: 402 MWGYLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRF 461

Query: 458 CYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
            YN  I G  K++    A+ +  EM   G  PD +T+ +       +GN
Sbjct: 462 AYNTRIVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGN 510



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 78/161 (48%)

Query: 337 LLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 396
           L++  M + G  P +   N +LR L     + +AK V+  M   G+     TY  ++D  
Sbjct: 166 LVFDKMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDSY 225

Query: 397 CESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNI 456
           C+  ++D+A     ++       ++  Y  ++ GL + G++ +A   + E+++SG+  + 
Sbjct: 226 CKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSA 285

Query: 457 VCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
             YN +I+G C+  +  EA+ ++ EM      P   T+  L
Sbjct: 286 YTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTL 326


>gi|297746120|emb|CBI16176.3| unnamed protein product [Vitis vinifera]
          Length = 819

 Score =  205 bits (521), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 129/471 (27%), Positives = 235/471 (49%), Gaps = 37/471 (7%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ +C   ++ EA  LF +M  +G  PN V+Y+ LI  +C+ G++DVA     +M   G+
Sbjct: 362 INSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGI 421

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
                 YS L+ G  +   +  A  L  ++         L  N   + +L+   C+EG +
Sbjct: 422 KATVYPYSSLISGHCKLGKLRAAKSLFDEMIA-----NGLKPNVVIYTSLISGYCKEGEL 476

Query: 121 NEVFRIAEDMPQGKSVNEE-FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           +  FR+  +M  GK ++   +    +I  LC + R   A+++   M +  + P+ V+YN 
Sbjct: 477 HNAFRLYHEM-TGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNV 535

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++ G CK G  +RA++LL+E ++ G +P  +TY+ L+ GLC    + +AR+ +  +  ++
Sbjct: 536 LIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQ 595

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                                 + LN +       C P+V+T   +ING CK+G +++A 
Sbjct: 596 ----------------------QKLNEI-----EGCLPNVVTYTALINGLCKIGLMDKAE 628

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
            +  +M+A     P+  T+   +  L + G I++A+ L + V+ + G+    VTYN ++R
Sbjct: 629 LLCREMLASN-SLPNQNTYACFLDYLTSEGNIEKAIQL-HDVLLE-GFLANTVTYNILIR 685

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
           G  +L R++EA EV   M+  G+  D  +Y+ +I   C    L EA + W+ ++      
Sbjct: 686 GFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRGVNP 745

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLS 470
           D   Y  +I G C +G++ +A     +++  GV PN   YN +I G C +S
Sbjct: 746 DTVAYNFLIYGCCVTGELTKAFELRDDMMRRGVKPNRATYNSLIHGTCLMS 796



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 126/506 (24%), Positives = 234/506 (46%), Gaps = 16/506 (3%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC +       ++  +M   G VP+  + + L+ G  + G +  A+ + ++++  GV P+
Sbjct: 295 LCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPS 354

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
              Y+ L+  + +   ++ A  L   +  +      L  N+  ++ L+DS C+ G ++  
Sbjct: 355 LFVYNALINSMCKDGKLDEAESLFNNMGHK-----GLFPNDVTYSILIDSFCKRGKLDVA 409

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
                 M +       +    +I   C+ G+   A  +   M   GL P++V Y S++ G
Sbjct: 410 LHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISG 469

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK G    A++L  E    G  P+ +T+  L+ GLC  + + +A K+   M+    +  
Sbjct: 470 YCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPN 529

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               N+ +   C   N      +L  M++    PD  T   +I+G C  GR+ EA + +N
Sbjct: 530 EVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMN 589

Query: 304 DMVAGK-------FCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
           D+   +        C P+ VT+T +I GL  +G + +A  LL + M      P   TY  
Sbjct: 590 DLQGEQQKLNEIEGCLPNVVTYTALINGLCKIGLMDKA-ELLCREMLASNSLPNQNTYAC 648

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416
            L  L     +E+A ++ + +L  G +A++ TY I+I G C+  ++ EA     +++   
Sbjct: 649 FLDYLTSEGNIEKAIQLHDVLLE-GFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSG 707

Query: 417 NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAY 476
              D   Y+ +I   CR G + EA+     +++ GV P+ V YN +I G C      +A+
Sbjct: 708 ISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKAF 767

Query: 477 QILREMRKNGLNPDAVTWRILDKLHG 502
           ++  +M + G+ P+  T+  L  +HG
Sbjct: 768 ELRDDMMRRGVKPNRATYNSL--IHG 791



 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 143/556 (25%), Positives = 250/556 (44%), Gaps = 68/556 (12%)

Query: 4   LCGLSRVGE---AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           L GL R+ +   A  LF ++ S G  P+V  YT ++   C   +   A +V   M   G 
Sbjct: 187 LNGLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLCELKDFIRAREVIGRMESSGC 246

Query: 61  LPNSLTYSVLVRGVLRTRDVERA----NVLMFKLWERMKEEEDLSVNNAAFANLVDSLCR 116
             +  TY+V +RG+ + + V  A    N+L +K          L  +   +  LV  LC+
Sbjct: 247 DLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYK---------GLRADVGTYCTLVLGLCK 297

Query: 117 EGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVS 176
                    +  +M +   V  E A  +++D L + G    A  +V  ++K G+ PSL  
Sbjct: 298 VEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFV 357

Query: 177 YNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFML 236
           YN++++ +CK G    A  L       G  P++ TY +L++  C    L+ A   L F+ 
Sbjct: 358 YNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVA---LHFLG 414

Query: 237 SKKDVDRTRICNIY---LRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMG 293
              +V        Y   +   C +       ++   M+    +P+V+   ++I+G+CK G
Sbjct: 415 KMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEG 474

Query: 294 RIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVT 353
            +  A ++ ++M  GK  +P+  TFT +I GL +  R+ EA N L+  M +    P  VT
Sbjct: 475 ELHNAFRLYHEM-TGKGISPNTYTFTALISGLCHANRMAEA-NKLFGEMVEWNVIPNEVT 532

Query: 354 YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413
           YN ++ G  +      A E+ + M+  G+V D+ TY  +I GLC + ++ EA+ F +D+ 
Sbjct: 533 YNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQ 592

Query: 414 WPSN--------IHDNYVYAAMIKGLCR-------------------------------- 433
                       + +   Y A+I GLC+                                
Sbjct: 593 GEQQKLNEIEGCLPNVVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDY 652

Query: 434 ---SGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD 490
               G I +A+  L++++  G   N V YN++I G CKL   +EA ++L  M  +G++PD
Sbjct: 653 LTSEGNIEKAIQ-LHDVLLEGFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPD 711

Query: 491 AVTWRILDKLHGNRGN 506
            +++  +   +  RG+
Sbjct: 712 CISYSTIIYEYCRRGD 727



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 112/382 (29%), Positives = 197/382 (51%), Gaps = 16/382 (4%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C L ++  A  LF +M + G  PNVV YT+LI GYC+ GE+  A++++ EM   G+ PN+
Sbjct: 436 CKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNT 495

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
            T++ L+ G+     +  AN    KL+  M E  ++  N   +  L++  C+EG     F
Sbjct: 496 YTFTALISGLCHANRMAEAN----KLFGEMVEW-NVIPNEVTYNVLIEGHCKEGNTVRAF 550

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKR--------GLTPSLVS 176
            + ++M +   V + +    +I  LC +GR   A   +  ++          G  P++V+
Sbjct: 551 ELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEIEGCLPNVVT 610

Query: 177 YNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFML 236
           Y ++++GLCK G   +A  L  E +    LP+++TY   ++ L  E ++EKA ++   +L
Sbjct: 611 YTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLHDVLL 670

Query: 237 SKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIE 296
            +  +  T   NI +R  C +    E   VLV M+ +   PD I+ +T+I  +C+ G ++
Sbjct: 671 -EGFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLK 729

Query: 297 EALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
           EA+K+   M+  +   PD V +  +I+G    G + +A  L   +M +RG  P   TYN+
Sbjct: 730 EAIKLWESML-NRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMM-RRGVKPNRATYNS 787

Query: 357 VLRGLFRLRRVEEAKEVFNCML 378
           ++ G   +  V    + F+C L
Sbjct: 788 LIHGTCLMSSVSSTADYFSCKL 809



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 130/531 (24%), Positives = 229/531 (43%), Gaps = 46/531 (8%)

Query: 17  FFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLR 76
           F D   + +    + +  LI  Y +         V   M  CG+LP   T S ++ G++R
Sbjct: 133 FLDSYRKCNFSTTLGFDLLIQTYVQNRRELDGLVVVRLMMDCGILPQIRTLSGVLNGLIR 192

Query: 77  TRDVE--------------RANVLMF--------KLWERMKEEE----------DLSVNN 104
            R                 R +V ++        +L + ++  E          DLSV  
Sbjct: 193 IRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLCELKDFIRAREVIGRMESSGCDLSV-- 250

Query: 105 AAFANLVDSLCREGYVNEVFRIAEDMP-QGKSVNEEFACGHMIDSLCRSGRNHGASRVVY 163
           A +   +  LC+   V E   I   +  +G   +    C  ++  LC+         ++ 
Sbjct: 251 ATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCT-LVLGLCKVEEFEAGEEMMN 309

Query: 164 VMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGES 223
            M + G  PS  + +++V GL K G    A+ L+ +  +FG  PS   Y  L+  +C + 
Sbjct: 310 EMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDG 369

Query: 224 DLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLN 283
            L++A  +   M  K         +I + + C        L+ L  M +   +  V   +
Sbjct: 370 KLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYS 429

Query: 284 TVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMP 343
           ++I+G CK+G++  A  + ++M+A     P+ V +T++I G    G +  A   LY  M 
Sbjct: 430 SLISGHCKLGKLRAAKSLFDEMIANGL-KPNVVIYTSLISGYCKEGELHNAFR-LYHEMT 487

Query: 344 QRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLD 403
            +G SP   T+ A++ GL    R+ EA ++F  M+   V+ +  TY ++I+G C+     
Sbjct: 488 GKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTV 547

Query: 404 EAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD--------SGVTPN 455
            A    D++V    + D Y Y  +I GLC +G++ EA  F+ +L           G  PN
Sbjct: 548 RAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEIEGCLPN 607

Query: 456 IVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           +V Y  +I+G CK+ +  +A  + REM  +   P+  T+        + GN
Sbjct: 608 VVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGN 658



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 143/298 (47%), Gaps = 4/298 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC  +R+ EA+KLF +M     +PN V+Y  LI G+C+ G    A+++ DEM   G++P+
Sbjct: 505 LCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPD 564

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLW---ERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           + TY  L+ G+  T  V  A   M  L    +++ E E    N   +  L++ LC+ G +
Sbjct: 565 TYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEIEGCLPNVVTYTALINGLCKIGLM 624

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           ++   +  +M    S+  +      +D L   G    A ++  V+ + G   + V+YN +
Sbjct: 625 DKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLHDVLLE-GFLANTVTYNIL 683

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G CK G    A ++L   I  G  P   +Y  ++   C   DL++A K+ + ML++  
Sbjct: 684 IRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRGV 743

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
              T   N  +   C+    T+   +   M++   +P+  T N++I+G C M  +   
Sbjct: 744 NPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGVKPNRATYNSLIHGTCLMSSVSST 801


>gi|302774757|ref|XP_002970795.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
 gi|302806735|ref|XP_002985099.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
 gi|300147309|gb|EFJ13974.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
 gi|300161506|gb|EFJ28121.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
          Length = 543

 Score =  205 bits (521), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 139/481 (28%), Positives = 244/481 (50%), Gaps = 24/481 (4%)

Query: 9   RVGEAHKLFFDMKSRGHV-PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTY 67
           R  +A+++F D     H   N ++Y TLI G+C+ G+M+ A+++  EM+  G  P+ +T+
Sbjct: 84  RHHQAYQIFRDELLGQHCDTNHITYNTLIGGFCKAGDMERAFQLLAEMKERGHSPDVVTH 143

Query: 68  SVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIA 127
           S +V+ +  T ++ RA        +  +E  + + ++  F  LV  LC+   ++E  ++ 
Sbjct: 144 SSIVQALCNTGNLSRA-------MQYFRESVECAPDSVLFNILVHGLCKANQLSEARQMI 196

Query: 128 EDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKH 187
           E+M +   V +      +ID LC+S R   A +++  M KR + P+LV+YN++++G CK 
Sbjct: 197 EEMSERGIVPDVVTYNSLIDGLCKSYRMEEARQLLETMVKRKVRPNLVTYNTLIYGYCKT 256

Query: 188 GGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC 247
           G    A+QL+E  IQ G  P   T+  L+ G C +S ++KA +VL  M            
Sbjct: 257 GCTGLAHQLIERMIQSGTHPDVVTFNSLISGFCQKSKIDKACEVLHLMKKGLCAPNLVTY 316

Query: 248 NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA 307
           N+ +  LC      E   +L  M      PD+IT N++I  FC+  +IE+A ++ N MV 
Sbjct: 317 NVLISGLCDAGRANEACELLSEMDGRGILPDIITYNSLIGIFCRNFQIEQAFQIQNLMVE 376

Query: 308 GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRV 367
            +   PD +++ T+   LL   R  EA  LL   M   G  P + T+N+++ GL   RR+
Sbjct: 377 -RGVIPDGISYCTLAVALLKSERFDEAFALLDN-MFDAGAIPNLFTFNSLMEGLCCSRRL 434

Query: 368 EEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAM 427
           +EA+ +   M  +G    ++TY +++ GLC++ ++D+AK     +V             +
Sbjct: 435 DEARHLLAVMRRVGCDPAASTYEVLVTGLCKAGRVDDAKEVLVMMVSEGIQPLVSSSGTI 494

Query: 428 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKR--EAYQILREMRKN 485
           +  L R GK   A+H+  ++V +               AC  S ++  E  ++LRE + N
Sbjct: 495 VHTLAREGKQDLALHYFDQVVAAE------------SKACDPSYQKLLEFVKVLREGKSN 542

Query: 486 G 486
            
Sbjct: 543 S 543



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 133/472 (28%), Positives = 235/472 (49%), Gaps = 18/472 (3%)

Query: 22  SRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEM--RHCG-VLPNSLTYSVLVRGVLRTR 78
           SR  VPN V     +       ++DV+   F  +   H G  + N+ T + L+R +++ R
Sbjct: 29  SRNLVPNTVGRVLQV-----IKDVDVSLFFFRWVTRSHRGESIHNNFTCNCLLRTLVKAR 83

Query: 79  DVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNE 138
              +A    ++++      +    N+  +  L+   C+ G +   F++  +M +     +
Sbjct: 84  RHHQA----YQIFRDELLGQHCDTNHITYNTLIGGFCKAGDMERAFQLLAEMKERGHSPD 139

Query: 139 EFACGHMIDSLCRSGRNHGASRVVYVMRKR-GLTPSLVSYNSIVHGLCKHGGCMRAYQLL 197
                 ++ +LC +G     SR +   R+     P  V +N +VHGLCK      A Q++
Sbjct: 140 VVTHSSIVQALCNTG---NLSRAMQYFRESVECAPDSVLFNILVHGLCKANQLSEARQMI 196

Query: 198 EEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLI 257
           EE  + G +P   TY  L++GLC    +E+AR++L+ M+ +K        N  +   C  
Sbjct: 197 EEMSERGIVPDVVTYNSLIDGLCKSYRMEEARQLLETMVKRKVRPNLVTYNTLIYGYCKT 256

Query: 258 KNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVT 317
                   ++  M+Q+   PDV+T N++I+GFC+  +I++A +VL+ M  G  CAP+ VT
Sbjct: 257 GCTGLAHQLIERMIQSGTHPDVVTFNSLISGFCQKSKIDKACEVLHLMKKG-LCAPNLVT 315

Query: 318 FTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCM 377
           +  +I GL + GR  EA  LL + M  RG  P I+TYN+++    R  ++E+A ++ N M
Sbjct: 316 YNVLISGLCDAGRANEACELLSE-MDGRGILPDIITYNSLIGIFCRNFQIEQAFQIQNLM 374

Query: 378 LGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKI 437
           +  GV+ D  +Y  +   L +S + DEA    D++     I + + + ++++GLC S ++
Sbjct: 375 VERGVIPDGISYCTLAVALLKSERFDEAFALLDNMFDAGAIPNLFTFNSLMEGLCCSRRL 434

Query: 438 HEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNP 489
            EA H L  +   G  P    Y V++ G CK     +A ++L  M   G+ P
Sbjct: 435 DEARHLLAVMRRVGCDPAASTYEVLVTGLCKAGRVDDAKEVLVMMVSEGIQP 486



 Score =  171 bits (433), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 115/413 (27%), Positives = 203/413 (49%), Gaps = 5/413 (1%)

Query: 86  LMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVN-EEFACGH 144
           L F  W       +   NN     L+ +L +    ++ ++I  D   G+  +        
Sbjct: 51  LFFFRWVTRSHRGESIHNNFTCNCLLRTLVKARRHHQAYQIFRDELLGQHCDTNHITYNT 110

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
           +I   C++G    A +++  M++RG +P +V+++SIV  LC  G   RA Q   E ++  
Sbjct: 111 LIGGFCKAGDMERAFQLLAEMKERGHSPDVVTHSSIVQALCNTGNLSRAMQYFRESVECA 170

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL 264
             P    + +LV GLC  + L +AR++++ M  +  V      N  +  LC      E  
Sbjct: 171 --PDSVLFNILVHGLCKANQLSEARQMIEEMSERGIVPDVVTYNSLIDGLCKSYRMEEAR 228

Query: 265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 324
            +L  M++ + +P+++T NT+I G+CK G    A +++  M+      PD VTF ++I G
Sbjct: 229 QLLETMVKRKVRPNLVTYNTLIYGYCKTGCTGLAHQLIERMIQSG-THPDVVTFNSLISG 287

Query: 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 384
                +I +A  +L+ +M +   +P +VTYN ++ GL    R  EA E+ + M G G++ 
Sbjct: 288 FCQKSKIDKACEVLH-LMKKGLCAPNLVTYNVLISGLCDAGRANEACELLSEMDGRGILP 346

Query: 385 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFL 444
           D  TY  +I   C + Q+++A +  + +V    I D   Y  +   L +S +  EA   L
Sbjct: 347 DIITYNSLIGIFCRNFQIEQAFQIQNLMVERGVIPDGISYCTLAVALLKSERFDEAFALL 406

Query: 445 YELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
             + D+G  PN+  +N +++G C      EA  +L  MR+ G +P A T+ +L
Sbjct: 407 DNMFDAGAIPNLFTFNSLMEGLCCSRRLDEARHLLAVMRRVGCDPAASTYEVL 459



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 89/339 (26%), Positives = 161/339 (47%), Gaps = 6/339 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC  +++ EA ++  +M  RG VP+VV+Y +LI G C++  M+ A ++ + M    V PN
Sbjct: 183 LCKANQLSEARQMIEEMSERGIVPDVVTYNSLIDGLCKSYRMEEARQLLETMVKRKVRPN 242

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY+ L+ G  +T        L  +L ERM  +     +   F +L+   C++  +++ 
Sbjct: 243 LVTYNTLIYGYCKT----GCTGLAHQLIERMI-QSGTHPDVVTFNSLISGFCQKSKIDKA 297

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             +   M +G           +I  LC +GR + A  ++  M  RG+ P +++YNS++  
Sbjct: 298 CEVLHLMKKGLCAPNLVTYNVLISGLCDAGRANEACELLSEMDGRGILPDIITYNSLIGI 357

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            C++    +A+Q+    ++ G +P   +Y  L   L      ++A  +L  M     +  
Sbjct: 358 FCRNFQIEQAFQIQNLMVERGVIPDGISYCTLAVALLKSERFDEAFALLDNMFDAGAIPN 417

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               N  +  LC  +   E  ++L  M +  C P   T   ++ G CK GR+++A +VL 
Sbjct: 418 LFTFNSLMEGLCCSRRLDEARHLLAVMRRVGCDPAASTYEVLVTGLCKAGRVDDAKEVLV 477

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVM 342
            MV+     P   +  TI+  L   G+   AL+   QV+
Sbjct: 478 MMVSEGI-QPLVSSSGTIVHTLAREGKQDLALHYFDQVV 515



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 83/315 (26%), Positives = 149/315 (47%), Gaps = 7/315 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   R+ EA +L   M  R   PN+V+Y TLI+GYC+TG   +A+++ + M   G 
Sbjct: 215 IDGLCKSYRMEEARQLLETMVKRKVRPNLVTYNTLIYGYCKTGCTGLAHQLIERMIQSGT 274

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +T++ L+ G  +   +++A  ++  + + +      + N   +  L+  LC  G  
Sbjct: 275 HPDVVTFNSLISGFCQKSKIDKACEVLHLMKKGL-----CAPNLVTYNVLISGLCDAGRA 329

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           NE   +  +M     + +      +I   CR+ +   A ++  +M +RG+ P  +SY ++
Sbjct: 330 NEACELLSEMDGRGILPDIITYNSLIGIFCRNFQIEQAFQIQNLMVERGVIPDGISYCTL 389

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
              L K      A+ LL+     G +P+  T+  L+EGLC    L++AR +L  M     
Sbjct: 390 AVALLKSERFDEAFALLDNMFDAGAIPNLFTFNSLMEGLCCSRRLDEARHLLAVMRRVGC 449

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                   + +  LC      +   VLV M+    QP V +  T+++   + G+ + AL 
Sbjct: 450 DPAASTYEVLVTGLCKAGRVDDAKEVLVMMVSEGIQPLVSSSGTIVHTLAREGKQDLALH 509

Query: 301 VLNDMVAG--KFCAP 313
             + +VA   K C P
Sbjct: 510 YFDQVVAAESKACDP 524



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 1/91 (1%)

Query: 417 NIHDNYVYAAMIKGLCRSGKIHEAVH-FLYELVDSGVTPNIVCYNVVIDGACKLSMKREA 475
           +IH+N+    +++ L ++ + H+A   F  EL+      N + YN +I G CK      A
Sbjct: 65  SIHNNFTCNCLLRTLVKARRHHQAYQIFRDELLGQHCDTNHITYNTLIGGFCKAGDMERA 124

Query: 476 YQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           +Q+L EM++ G +PD VT   + +   N GN
Sbjct: 125 FQLLAEMKERGHSPDVVTHSSIVQALCNTGN 155


>gi|18415314|ref|NP_567587.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|334186696|ref|NP_001190771.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|15810161|gb|AAL07224.1| unknown protein [Arabidopsis thaliana]
 gi|332658782|gb|AEE84182.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332658783|gb|AEE84183.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score =  205 bits (521), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 131/505 (25%), Positives = 255/505 (50%), Gaps = 9/505 (1%)

Query: 4   LCGLSRVGEAHKL--FFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVL 61
           L  L R  E  K    FD+  +G  P+V  +TT I+ +C+ G+++ A K+F +M   GV 
Sbjct: 233 LTSLVRANEFQKCCEAFDVVCKGVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVA 292

Query: 62  PNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVN 121
           PN +T++ ++ G+      + A +   K+ ER  E   ++     ++ LV  L R   + 
Sbjct: 293 PNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLIT-----YSILVKGLTRAKRIG 347

Query: 122 EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
           + + + ++M +           ++IDS   +G  + A  +  +M  +GL+ +  +YN+++
Sbjct: 348 DAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLI 407

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
            G CK+G    A +LL+E +  G+  ++ ++  ++  LC     + A + +  ML +   
Sbjct: 408 KGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMS 467

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
               +    +  LC     ++ L +    L      D  T N +++G C+ G+++EA ++
Sbjct: 468 PGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRI 527

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
             +++ G+ C  D V++ T+I G     ++ EA   L + M +RG  P   TY+ ++ GL
Sbjct: 528 QKEIL-GRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDE-MVKRGLKPDNYTYSILICGL 585

Query: 362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
           F + +VEEA + ++     G++ D  TY+++IDG C++ + +E + F+D+++  +   + 
Sbjct: 586 FNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNT 645

Query: 422 YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
            VY  +I+  CRSG++  A+    ++   G++PN   Y  +I G   +S   EA  +  E
Sbjct: 646 VVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEE 705

Query: 482 MRKNGLNPDAVTWRILDKLHGNRGN 506
           MR  GL P+   +  L   +G  G 
Sbjct: 706 MRMEGLEPNVFHYTALIDGYGKLGQ 730



 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 141/507 (27%), Positives = 240/507 (47%), Gaps = 9/507 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C   +V EA KLF  M+  G  PNVV++ T+I G    G  D A+   ++M   G+
Sbjct: 267 INAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGM 326

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P  +TYS+LV+G+ R + +  A    F L E  K+      N   + NL+DS    G +
Sbjct: 327 EPTLITYSILVKGLTRAKRIGDA---YFVLKEMTKK--GFPPNVIVYNNLIDSFIEAGSL 381

Query: 121 NEVFRIAEDM-PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           N+   I + M  +G S+        +I   C++G+   A R++  M   G   +  S+ S
Sbjct: 382 NKAIEIKDLMVSKGLSLTSS-TYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTS 440

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++  LC H     A + + E +     P       L+ GLC      KA ++    L+K 
Sbjct: 441 VICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKG 500

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
            V  TR  N  L  LC      E   +   +L   C  D ++ NT+I+G C   +++EA 
Sbjct: 501 FVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAF 560

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
             L++MV  +   PD  T++ +I GL N+ +++EA+   +    + G  P + TY+ ++ 
Sbjct: 561 MFLDEMVK-RGLKPDNYTYSILICGLFNMNKVEEAIQF-WDDCKRNGMLPDVYTYSVMID 618

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
           G  +  R EE +E F+ M+   V  ++  Y  +I   C S +L  A    +D+       
Sbjct: 619 GCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISP 678

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           ++  Y ++IKG+    ++ EA     E+   G+ PN+  Y  +IDG  KL    +   +L
Sbjct: 679 NSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLL 738

Query: 480 REMRKNGLNPDAVTWRILDKLHGNRGN 506
           REM    ++P+ +T+ ++   +   GN
Sbjct: 739 REMHSKNVHPNKITYTVMIGGYARDGN 765



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 111/468 (23%), Positives = 203/468 (43%), Gaps = 44/468 (9%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           R+G+A+ +  +M  +G  PNV+ Y  LI  +   G ++ A ++ D M   G+   S TY+
Sbjct: 345 RIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYN 404

Query: 69  VLVRGVLRTRDVERA------------NV---------------LMFKLWERMKEE---E 98
            L++G  +    + A            NV               LMF    R   E    
Sbjct: 405 TLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLR 464

Query: 99  DLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGA 158
           ++S        L+  LC+ G  ++   +         V +      ++  LC +G+   A
Sbjct: 465 NMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEA 524

Query: 159 SRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEG 218
            R+   +  RG     VSYN+++ G C       A+  L+E ++ G  P  +TY +L+  
Sbjct: 525 FRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILI-- 582

Query: 219 LCGESDLEKARKVLQFMLSKKDVDRTRIC------NIYLRALCLIKNPTELLNVLVFMLQ 272
            CG  ++ K  + +QF     D  R  +       ++ +   C  +   E       M+ 
Sbjct: 583 -CGLFNMNKVEEAIQFW---DDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMS 638

Query: 273 TQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQ 332
              QP+ +  N +I  +C+ GR+  AL++  DM   K  +P++ T+T++I G+  + R++
Sbjct: 639 KNVQPNTVVYNHLIRAYCRSGRLSMALELREDM-KHKGISPNSATYTSLIKGMSIISRVE 697

Query: 333 EALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIV 392
           EA  LL++ M   G  P +  Y A++ G  +L ++ + + +   M    V  +  TY ++
Sbjct: 698 EA-KLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVM 756

Query: 393 IDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEA 440
           I G      + EA R  +++     + D+  Y   I G  + G + EA
Sbjct: 757 IGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYGYLKQGGVLEA 804



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 127/304 (41%), Gaps = 38/304 (12%)

Query: 186 KHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTR 245
           K  GC  A  +       G  PS+ T  +L+  L   ++ +K                  
Sbjct: 203 KRDGCYLALDVFPVLANKGMFPSKTTCNILLTSLVRANEFQK------------------ 244

Query: 246 ICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM 305
            C      +C                     PDV    T IN FCK G++EEA+K+ + M
Sbjct: 245 -CCEAFDVVC-----------------KGVSPDVYLFTTAINAFCKGGKVEEAVKLFSKM 286

Query: 306 VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLR 365
                 AP+ VTF T+I GL   GR  EA  +  + M +RG  P ++TY+ +++GL R +
Sbjct: 287 EEAG-VAPNVVTFNTVIDGLGMCGRYDEAF-MFKEKMVERGMEPTLITYSILVKGLTRAK 344

Query: 366 RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYA 425
           R+ +A  V   M   G   +   Y  +ID   E+  L++A    D +V       +  Y 
Sbjct: 345 RIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYN 404

Query: 426 AMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN 485
            +IKG C++G+   A   L E++  G   N   +  VI   C   M   A + + EM   
Sbjct: 405 TLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLR 464

Query: 486 GLNP 489
            ++P
Sbjct: 465 NMSP 468



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 105/218 (48%), Gaps = 15/218 (6%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C   R  E  + F +M S+   PN V Y  LI  YCR+G + +A ++ ++M+H G+
Sbjct: 617 IDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGI 676

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PNS TY+ L++G+     VE A +L    +E M+ E  L  N   +  L+D   + G +
Sbjct: 677 SPNSATYTSLIKGMSIISRVEEAKLL----FEEMRME-GLEPNVFHYTALIDGYGKLGQM 731

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +V  +  +M        +     MI    R G    ASR++  MR++G+ P  ++Y   
Sbjct: 732 VKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEF 791

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEG 218
           ++G  K GG + A++             E  Y  ++EG
Sbjct: 792 IYGYLKQGGVLEAFK----------GSDEENYAAIIEG 819


>gi|255570422|ref|XP_002526170.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534547|gb|EEF36246.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 504

 Score =  205 bits (521), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 134/480 (27%), Positives = 241/480 (50%), Gaps = 9/480 (1%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           MKS G+ PN+V+ +TL+ G C  G++  A ++FD+M   G   + L Y  L+  + +TR 
Sbjct: 1   MKS-GYQPNLVTVSTLVKGMCFEGKVMDALELFDKMTRSGFQGDILLYGYLINALRKTRQ 59

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
             RA     +L  RM  E   S N   +  ++DSLC++G   +  ++  +M         
Sbjct: 60  ARRA----VELHRRMLSE-ICSGNFFTYGLVIDSLCKDGLAIKGLKMFREMINMGICPNV 114

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
                +I+ LCR G+   A  +   M  +G+  ++++YNS++H  C+ G    A +   +
Sbjct: 115 IVYSSLINGLCRVGKLREAVNLFDEMVSQGIKANVITYNSLIHASCRFGLWKEATRTFSQ 174

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
            +  G LP   T+  L++ L  +  +++A K+ + M+ + +       N  L  LCL   
Sbjct: 175 MVGEGILPDVVTFTTLIDHLSKKGKVQEAYKIFELMIKQGEAPNIVTYNSLLNGLCLHHQ 234

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
               + +   M++   + DVI+ NT+ING+C  G+ EEA+ +   M   +   P   T+T
Sbjct: 235 MDHAVRLFEVMVERGIKIDVISYNTLINGYCTSGKTEEAMTLFRKMQYEEL-TPSITTYT 293

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
            ++  L   GRI+ A   L+  M   G SP + TY  +L GL +   +EEA +VF  +  
Sbjct: 294 ILLKALYQNGRIRTAKE-LFNNMQICGQSPSLDTYTVLLDGLCKNGCIEEAIDVFRSLKS 352

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
           I        Y+I+I G+ ++ + + A   +D+I     + +   Y  MI GLC+ GK+ E
Sbjct: 353 IKYKPSIRIYSILIGGMFQARRWESAMEIFDEIPTVGLVPNIVTYNIMINGLCKEGKLLE 412

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNP-DAVTWRILD 498
           A     ++ +SG   + + +N +I G  + +  ++A + L+ MR+   +P D+VT  +++
Sbjct: 413 AERLFVQMEESGCEQDEISFNFIIRGFLQENQVQKAMEFLKRMREKNFSPNDSVTLMLVN 472



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 121/460 (26%), Positives = 203/460 (44%), Gaps = 63/460 (13%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC      +  K+F +M + G  PNV+ Y++LI+G CR G++  A  +FDEM   G+
Sbjct: 86  IDSLCKDGLAIKGLKMFREMINMGICPNVIVYSSLINGLCRVGKLREAVNLFDEMVSQGI 145

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEE------EDLSVNNAAFANLVDSL 114
             N +TY+ L+    R           F LW+           E +  +   F  L+D L
Sbjct: 146 KANVITYNSLIHASCR-----------FGLWKEATRTFSQMVGEGILPDVVTFTTLIDHL 194

Query: 115 CREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSL 174
            ++G V E ++I E                                   +M K+G  P++
Sbjct: 195 SKKGKVQEAYKIFE-----------------------------------LMIKQGEAPNI 219

Query: 175 VSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQF 234
           V+YNS+++GLC H     A +L E  ++ G      +Y  L+ G C     E+A  + + 
Sbjct: 220 VTYNSLLNGLCLHHQMDHAVRLFEVMVERGIKIDVISYNTLINGYCTSGKTEEAMTLFRK 279

Query: 235 MLSKKDVDRTRICNIYLRALCL---IKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK 291
           M  ++         I L+AL     I+   EL N +    Q+   P + T   +++G CK
Sbjct: 280 MQYEELTPSITTYTILLKALYQNGRIRTAKELFNNMQICGQS---PSLDTYTVLLDGLCK 336

Query: 292 MGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGI 351
            G IEEA+ V   + + K+  P    ++ +I G+    R + A+ +  ++ P  G  P I
Sbjct: 337 NGCIEEAIDVFRSLKSIKY-KPSIRIYSILIGGMFQARRWESAMEIFDEI-PTVGLVPNI 394

Query: 352 VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDD 411
           VTYN ++ GL +  ++ EA+ +F  M   G   D  ++  +I G  + NQ+ +A  F   
Sbjct: 395 VTYNIMINGLCKEGKLLEAERLFVQMEESGCEQDEISFNFIIRGFLQENQVQKAMEFLKR 454

Query: 412 IVWPSNIHDNYVYAAMIKGLCRSGKIHEAV--HFLYELVD 449
           +    N   N     M+  L  +      +  +FL+ELV 
Sbjct: 455 M-REKNFSPNDSVTLMLVNLYAADAQSSELPNNFLHELVQ 493



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 86/333 (25%), Positives = 159/333 (47%), Gaps = 37/333 (11%)

Query: 167 KRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLE 226
           K G  P+LV+ +++V G+C  G  M A +L ++  + G+      Y  L+  L       
Sbjct: 2   KSGYQPNLVTVSTLVKGMCFEGKVMDALELFDKMTRSGFQGDILLYGYLINAL------- 54

Query: 227 KARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVI 286
             RK  Q   +++ V+  R                        ML   C  +  T   VI
Sbjct: 55  --RKTRQ---ARRAVELHR-----------------------RMLSEICSGNFFTYGLVI 86

Query: 287 NGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
           +  CK G   + LK+  +M+    C P+ + ++++I GL  VG+++EA+NL  +++ Q G
Sbjct: 87  DSLCKDGLAIKGLKMFREMINMGIC-PNVIVYSSLINGLCRVGKLREAVNLFDEMVSQ-G 144

Query: 347 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
               ++TYN+++    R    +EA   F+ M+G G++ D  T+  +ID L +  ++ EA 
Sbjct: 145 IKANVITYNSLIHASCRFGLWKEATRTFSQMVGEGILPDVVTFTTLIDHLSKKGKVQEAY 204

Query: 407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466
           + ++ ++      +   Y +++ GLC   ++  AV     +V+ G+  +++ YN +I+G 
Sbjct: 205 KIFELMIKQGEAPNIVTYNSLLNGLCLHHQMDHAVRLFEVMVERGIKIDVISYNTLINGY 264

Query: 467 CKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
           C      EA  + R+M+   L P   T+ IL K
Sbjct: 265 CTSGKTEEAMTLFRKMQYEELTPSITTYTILLK 297


>gi|3080374|emb|CAA18631.1| putative protein [Arabidopsis thaliana]
 gi|7268739|emb|CAB78946.1| putative protein [Arabidopsis thaliana]
          Length = 814

 Score =  205 bits (521), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 131/505 (25%), Positives = 255/505 (50%), Gaps = 9/505 (1%)

Query: 4   LCGLSRVGEAHKL--FFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVL 61
           L  L R  E  K    FD+  +G  P+V  +TT I+ +C+ G+++ A K+F +M   GV 
Sbjct: 222 LTSLVRANEFQKCCEAFDVVCKGVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVA 281

Query: 62  PNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVN 121
           PN +T++ ++ G+      + A +   K+ ER  E   ++     ++ LV  L R   + 
Sbjct: 282 PNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLIT-----YSILVKGLTRAKRIG 336

Query: 122 EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
           + + + ++M +           ++IDS   +G  + A  +  +M  +GL+ +  +YN+++
Sbjct: 337 DAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLI 396

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
            G CK+G    A +LL+E +  G+  ++ ++  ++  LC     + A + +  ML +   
Sbjct: 397 KGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMS 456

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
               +    +  LC     ++ L +    L      D  T N +++G C+ G+++EA ++
Sbjct: 457 PGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRI 516

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
             +++ G+ C  D V++ T+I G     ++ EA   L + M +RG  P   TY+ ++ GL
Sbjct: 517 QKEIL-GRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDE-MVKRGLKPDNYTYSILICGL 574

Query: 362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
           F + +VEEA + ++     G++ D  TY+++IDG C++ + +E + F+D+++  +   + 
Sbjct: 575 FNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNT 634

Query: 422 YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
            VY  +I+  CRSG++  A+    ++   G++PN   Y  +I G   +S   EA  +  E
Sbjct: 635 VVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEE 694

Query: 482 MRKNGLNPDAVTWRILDKLHGNRGN 506
           MR  GL P+   +  L   +G  G 
Sbjct: 695 MRMEGLEPNVFHYTALIDGYGKLGQ 719



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 141/507 (27%), Positives = 240/507 (47%), Gaps = 9/507 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C   +V EA KLF  M+  G  PNVV++ T+I G    G  D A+   ++M   G+
Sbjct: 256 INAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGM 315

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P  +TYS+LV+G+ R + +  A    F L E  K+      N   + NL+DS    G +
Sbjct: 316 EPTLITYSILVKGLTRAKRIGDA---YFVLKEMTKK--GFPPNVIVYNNLIDSFIEAGSL 370

Query: 121 NEVFRIAEDM-PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           N+   I + M  +G S+        +I   C++G+   A R++  M   G   +  S+ S
Sbjct: 371 NKAIEIKDLMVSKGLSLTSS-TYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTS 429

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++  LC H     A + + E +     P       L+ GLC      KA ++    L+K 
Sbjct: 430 VICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKG 489

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
            V  TR  N  L  LC      E   +   +L   C  D ++ NT+I+G C   +++EA 
Sbjct: 490 FVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAF 549

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
             L++MV  +   PD  T++ +I GL N+ +++EA+   +    + G  P + TY+ ++ 
Sbjct: 550 MFLDEMVK-RGLKPDNYTYSILICGLFNMNKVEEAIQF-WDDCKRNGMLPDVYTYSVMID 607

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
           G  +  R EE +E F+ M+   V  ++  Y  +I   C S +L  A    +D+       
Sbjct: 608 GCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISP 667

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           ++  Y ++IKG+    ++ EA     E+   G+ PN+  Y  +IDG  KL    +   +L
Sbjct: 668 NSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLL 727

Query: 480 REMRKNGLNPDAVTWRILDKLHGNRGN 506
           REM    ++P+ +T+ ++   +   GN
Sbjct: 728 REMHSKNVHPNKITYTVMIGGYARDGN 754



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 111/468 (23%), Positives = 203/468 (43%), Gaps = 44/468 (9%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           R+G+A+ +  +M  +G  PNV+ Y  LI  +   G ++ A ++ D M   G+   S TY+
Sbjct: 334 RIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYN 393

Query: 69  VLVRGVLRTRDVERA------------NV---------------LMFKLWERMKEE---E 98
            L++G  +    + A            NV               LMF    R   E    
Sbjct: 394 TLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLR 453

Query: 99  DLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGA 158
           ++S        L+  LC+ G  ++   +         V +      ++  LC +G+   A
Sbjct: 454 NMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEA 513

Query: 159 SRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEG 218
            R+   +  RG     VSYN+++ G C       A+  L+E ++ G  P  +TY +L+  
Sbjct: 514 FRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILI-- 571

Query: 219 LCGESDLEKARKVLQFMLSKKDVDRTRIC------NIYLRALCLIKNPTELLNVLVFMLQ 272
            CG  ++ K  + +QF     D  R  +       ++ +   C  +   E       M+ 
Sbjct: 572 -CGLFNMNKVEEAIQFW---DDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMS 627

Query: 273 TQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQ 332
              QP+ +  N +I  +C+ GR+  AL++  DM   K  +P++ T+T++I G+  + R++
Sbjct: 628 KNVQPNTVVYNHLIRAYCRSGRLSMALELREDM-KHKGISPNSATYTSLIKGMSIISRVE 686

Query: 333 EALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIV 392
           EA  LL++ M   G  P +  Y A++ G  +L ++ + + +   M    V  +  TY ++
Sbjct: 687 EA-KLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVM 745

Query: 393 IDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEA 440
           I G      + EA R  +++     + D+  Y   I G  + G + EA
Sbjct: 746 IGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYGYLKQGGVLEA 793



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 127/304 (41%), Gaps = 38/304 (12%)

Query: 186 KHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTR 245
           K  GC  A  +       G  PS+ T  +L+  L   ++ +K                  
Sbjct: 192 KRDGCYLALDVFPVLANKGMFPSKTTCNILLTSLVRANEFQK------------------ 233

Query: 246 ICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM 305
            C      +C                     PDV    T IN FCK G++EEA+K+ + M
Sbjct: 234 -CCEAFDVVC-----------------KGVSPDVYLFTTAINAFCKGGKVEEAVKLFSKM 275

Query: 306 VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLR 365
                 AP+ VTF T+I GL   GR  EA  +  + M +RG  P ++TY+ +++GL R +
Sbjct: 276 EEAGV-APNVVTFNTVIDGLGMCGRYDEAF-MFKEKMVERGMEPTLITYSILVKGLTRAK 333

Query: 366 RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYA 425
           R+ +A  V   M   G   +   Y  +ID   E+  L++A    D +V       +  Y 
Sbjct: 334 RIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYN 393

Query: 426 AMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN 485
            +IKG C++G+   A   L E++  G   N   +  VI   C   M   A + + EM   
Sbjct: 394 TLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLR 453

Query: 486 GLNP 489
            ++P
Sbjct: 454 NMSP 457



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 105/218 (48%), Gaps = 15/218 (6%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C   R  E  + F +M S+   PN V Y  LI  YCR+G + +A ++ ++M+H G+
Sbjct: 606 IDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGI 665

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PNS TY+ L++G+     VE A +L    +E M+ E  L  N   +  L+D   + G +
Sbjct: 666 SPNSATYTSLIKGMSIISRVEEAKLL----FEEMRME-GLEPNVFHYTALIDGYGKLGQM 720

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +V  +  +M        +     MI    R G    ASR++  MR++G+ P  ++Y   
Sbjct: 721 VKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEF 780

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEG 218
           ++G  K GG + A++             E  Y  ++EG
Sbjct: 781 IYGYLKQGGVLEAFK----------GSDEENYAAIIEG 808


>gi|357121994|ref|XP_003562701.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Brachypodium distachyon]
          Length = 726

 Score =  205 bits (521), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 134/484 (27%), Positives = 224/484 (46%), Gaps = 9/484 (1%)

Query: 13  AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVA--YKVFDEMRHCGVLPNSLTYSVL 70
           A  LF DMKS G  PNV SY+ L+  Y     + +A  +++  EM   GV PN+ TY   
Sbjct: 193 ARSLFDDMKSSGPSPNVYSYSVLMSAYTHGDRLYLAEAFELLSEMEMKGVKPNAATYGTY 252

Query: 71  VRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDM 130
           + G+ RTR V  A   +  L +R         N   F  ++   CREG V E   + + M
Sbjct: 253 LYGLSRTRQVASAWNFLQMLCQRGN-----PCNTYCFNAVIQGFCREGQVQEAIEVFDAM 307

Query: 131 PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGC 190
            +G  V +  +   ++D LC+ G       ++  M + G+ P+LVSY+S++HGLC+ G  
Sbjct: 308 KKGGLVPDTHSYSILVDGLCKQGDVLTGYDLLVEMARNGIAPTLVSYSSLLHGLCRAGKV 367

Query: 191 MRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIY 250
             A++L     + G+      Y +++ G C   ++E    +   M+    V         
Sbjct: 368 ELAFELFRRLEEQGFKHDHIVYSIILNGCCQHLNIEVVCDLWNDMVHHNFVPDAYNYTSL 427

Query: 251 LRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKF 310
           + A C  +N T+ L V   ML +   P+V+T   +++GF K   I+EA   L+  V    
Sbjct: 428 IYAFCRHRNLTDALGVFELMLDSGVSPNVVTCTILVDGFGKERMIDEAFLFLHK-VRQFG 486

Query: 311 CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEA 370
             P+   +  II GL  V +      + +  M +RGY P  V Y+ ++    +  ++ EA
Sbjct: 487 IVPNLCMYRVIINGLCKVNKSDHVWGI-FADMIKRGYVPDTVVYSIIIDSFVKALKLPEA 545

Query: 371 KEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKG 430
             +F+ ML  G   +  TY  +I+GLC  ++L E    +  ++W     D  +Y ++I  
Sbjct: 546 FRLFHKMLDEGTKPNVFTYTSLINGLCHDDRLPEVVTLFKHMIWEGLTPDRILYTSLIVC 605

Query: 431 LCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD 490
            C+   +  A+     +   G++ +   Y  +I G  K+     A  ++ EM   GL P 
Sbjct: 606 YCKRSNMKAALEIFRGMGKLGLSADAFLYTCLIGGFSKVLAMDGAQCLMEEMTNKGLTPS 665

Query: 491 AVTW 494
            VT+
Sbjct: 666 VVTY 669



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 92/336 (27%), Positives = 162/336 (48%), Gaps = 41/336 (12%)

Query: 165 MRKRGLTPSLVSYNSIVHGLCKHGGCM---RAYQLLEEGIQFGYLPSEHTYKVLVEGLCG 221
           M+  G +P++ SY S++     HG  +    A++LL E    G  P+  TY   + GL  
Sbjct: 200 MKSSGPSPNVYSY-SVLMSAYTHGDRLYLAEAFELLSEMEMKGVKPNAATYGTYLYGLSR 258

Query: 222 ESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVIT 281
              +  A   LQ +       R   CN Y                               
Sbjct: 259 TRQVASAWNFLQML-----CQRGNPCNTY------------------------------C 283

Query: 282 LNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQV 341
            N VI GFC+ G+++EA++V + M  G    PD  +++ ++ GL   G +    +LL + 
Sbjct: 284 FNAVIQGFCREGQVQEAIEVFDAMKKGGL-VPDTHSYSILVDGLCKQGDVLTGYDLLVE- 341

Query: 342 MPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ 401
           M + G +P +V+Y+++L GL R  +VE A E+F  +   G   D   Y+I+++G C+   
Sbjct: 342 MARNGIAPTLVSYSSLLHGLCRAGKVELAFELFRRLEEQGFKHDHIVYSIILNGCCQHLN 401

Query: 402 LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNV 461
           ++     W+D+V  + + D Y Y ++I   CR   + +A+     ++DSGV+PN+V   +
Sbjct: 402 IEVVCDLWNDMVHHNFVPDAYNYTSLIYAFCRHRNLTDALGVFELMLDSGVSPNVVTCTI 461

Query: 462 VIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           ++DG  K  M  EA+  L ++R+ G+ P+   +R++
Sbjct: 462 LVDGFGKERMIDEAFLFLHKVRQFGIVPNLCMYRVI 497



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 101/423 (23%), Positives = 186/423 (43%), Gaps = 40/423 (9%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C   +V EA ++F  MK  G VP+  SY+ L+ G C+ G++   Y +  EM   G+ P 
Sbjct: 291 FCREGQVQEAIEVFDAMKKGGLVPDTHSYSILVDGLCKQGDVLTGYDLLVEMARNGIAPT 350

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            ++YS L+ G+ R   VE    L F+L+ R+ EE+    ++  ++ +++  C+   +  V
Sbjct: 351 LVSYSSLLHGLCRAGKVE----LAFELFRRL-EEQGFKHDHIVYSIILNGCCQHLNIEVV 405

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             +  DM     V + +    +I + CR      A  V  +M   G++P++V+   +V G
Sbjct: 406 CDLWNDMVHHNFVPDAYNYTSLIYAFCRHRNLTDALGVFELMLDSGVSPNVVTCTILVDG 465

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
             K      A+  L +  QFG +P+   Y+V++ GLC  +  +    +   M+ +  V  
Sbjct: 466 FGKERMIDEAFLFLHKVRQFGIVPNLCMYRVIINGLCKVNKSDHVWGIFADMIKRGYVPD 525

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
           T + +I + +        E   +   ML    +P+V T  ++ING C   R+ E + +  
Sbjct: 526 TVVYSIIIDSFVKALKLPEAFRLFHKMLDEGTKPNVFTYTSLINGLCHDDRLPEVVTLFK 585

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNL-------------------------- 337
            M+      PD + +T++I        ++ AL +                          
Sbjct: 586 HMIWEGL-TPDRILYTSLIVCYCKRSNMKAALEIFRGMGKLGLSADAFLYTCLIGGFSKV 644

Query: 338 --------LYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTY 389
                   L + M  +G +P +VTY  ++ G F++    +A   +N ML  G+  D+   
Sbjct: 645 LAMDGAQCLMEEMTNKGLTPSVVTYTNLIIGYFKIGDERKANMTYNSMLQAGITPDAKLS 704

Query: 390 AIV 392
            I+
Sbjct: 705 CIL 707


>gi|223635621|sp|Q940A6.2|PP325_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g19440, chloroplastic; Flags: Precursor
          Length = 838

 Score =  205 bits (521), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 131/505 (25%), Positives = 255/505 (50%), Gaps = 9/505 (1%)

Query: 4   LCGLSRVGEAHKL--FFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVL 61
           L  L R  E  K    FD+  +G  P+V  +TT I+ +C+ G+++ A K+F +M   GV 
Sbjct: 246 LTSLVRANEFQKCCEAFDVVCKGVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVA 305

Query: 62  PNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVN 121
           PN +T++ ++ G+      + A +   K+ ER  E   ++     ++ LV  L R   + 
Sbjct: 306 PNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLIT-----YSILVKGLTRAKRIG 360

Query: 122 EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
           + + + ++M +           ++IDS   +G  + A  +  +M  +GL+ +  +YN+++
Sbjct: 361 DAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLI 420

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
            G CK+G    A +LL+E +  G+  ++ ++  ++  LC     + A + +  ML +   
Sbjct: 421 KGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMS 480

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
               +    +  LC     ++ L +    L      D  T N +++G C+ G+++EA ++
Sbjct: 481 PGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRI 540

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
             +++ G+ C  D V++ T+I G     ++ EA   L + M +RG  P   TY+ ++ GL
Sbjct: 541 QKEIL-GRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDE-MVKRGLKPDNYTYSILICGL 598

Query: 362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
           F + +VEEA + ++     G++ D  TY+++IDG C++ + +E + F+D+++  +   + 
Sbjct: 599 FNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNT 658

Query: 422 YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
            VY  +I+  CRSG++  A+    ++   G++PN   Y  +I G   +S   EA  +  E
Sbjct: 659 VVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEE 718

Query: 482 MRKNGLNPDAVTWRILDKLHGNRGN 506
           MR  GL P+   +  L   +G  G 
Sbjct: 719 MRMEGLEPNVFHYTALIDGYGKLGQ 743



 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 141/507 (27%), Positives = 240/507 (47%), Gaps = 9/507 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C   +V EA KLF  M+  G  PNVV++ T+I G    G  D A+   ++M   G+
Sbjct: 280 INAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGM 339

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P  +TYS+LV+G+ R + +  A    F L E  K+      N   + NL+DS    G +
Sbjct: 340 EPTLITYSILVKGLTRAKRIGDA---YFVLKEMTKK--GFPPNVIVYNNLIDSFIEAGSL 394

Query: 121 NEVFRIAEDM-PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           N+   I + M  +G S+        +I   C++G+   A R++  M   G   +  S+ S
Sbjct: 395 NKAIEIKDLMVSKGLSLTSS-TYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTS 453

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++  LC H     A + + E +     P       L+ GLC      KA ++    L+K 
Sbjct: 454 VICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKG 513

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
            V  TR  N  L  LC      E   +   +L   C  D ++ NT+I+G C   +++EA 
Sbjct: 514 FVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAF 573

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
             L++MV  +   PD  T++ +I GL N+ +++EA+   +    + G  P + TY+ ++ 
Sbjct: 574 MFLDEMVK-RGLKPDNYTYSILICGLFNMNKVEEAIQF-WDDCKRNGMLPDVYTYSVMID 631

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
           G  +  R EE +E F+ M+   V  ++  Y  +I   C S +L  A    +D+       
Sbjct: 632 GCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISP 691

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           ++  Y ++IKG+    ++ EA     E+   G+ PN+  Y  +IDG  KL    +   +L
Sbjct: 692 NSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLL 751

Query: 480 REMRKNGLNPDAVTWRILDKLHGNRGN 506
           REM    ++P+ +T+ ++   +   GN
Sbjct: 752 REMHSKNVHPNKITYTVMIGGYARDGN 778



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 111/468 (23%), Positives = 203/468 (43%), Gaps = 44/468 (9%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           R+G+A+ +  +M  +G  PNV+ Y  LI  +   G ++ A ++ D M   G+   S TY+
Sbjct: 358 RIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYN 417

Query: 69  VLVRGVLRTRDVERA------------NV---------------LMFKLWERMKEE---E 98
            L++G  +    + A            NV               LMF    R   E    
Sbjct: 418 TLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLR 477

Query: 99  DLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGA 158
           ++S        L+  LC+ G  ++   +         V +      ++  LC +G+   A
Sbjct: 478 NMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEA 537

Query: 159 SRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEG 218
            R+   +  RG     VSYN+++ G C       A+  L+E ++ G  P  +TY +L+  
Sbjct: 538 FRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILI-- 595

Query: 219 LCGESDLEKARKVLQFMLSKKDVDRTRIC------NIYLRALCLIKNPTELLNVLVFMLQ 272
            CG  ++ K  + +QF     D  R  +       ++ +   C  +   E       M+ 
Sbjct: 596 -CGLFNMNKVEEAIQFW---DDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMS 651

Query: 273 TQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQ 332
              QP+ +  N +I  +C+ GR+  AL++  DM   K  +P++ T+T++I G+  + R++
Sbjct: 652 KNVQPNTVVYNHLIRAYCRSGRLSMALELREDM-KHKGISPNSATYTSLIKGMSIISRVE 710

Query: 333 EALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIV 392
           EA  LL++ M   G  P +  Y A++ G  +L ++ + + +   M    V  +  TY ++
Sbjct: 711 EA-KLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVM 769

Query: 393 IDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEA 440
           I G      + EA R  +++     + D+  Y   I G  + G + EA
Sbjct: 770 IGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYGYLKQGGVLEA 817



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 127/304 (41%), Gaps = 38/304 (12%)

Query: 186 KHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTR 245
           K  GC  A  +       G  PS+ T  +L+  L   ++ +K                  
Sbjct: 216 KRDGCYLALDVFPVLANKGMFPSKTTCNILLTSLVRANEFQK------------------ 257

Query: 246 ICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM 305
            C      +C                     PDV    T IN FCK G++EEA+K+ + M
Sbjct: 258 -CCEAFDVVC-----------------KGVSPDVYLFTTAINAFCKGGKVEEAVKLFSKM 299

Query: 306 VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLR 365
                 AP+ VTF T+I GL   GR  EA  +  + M +RG  P ++TY+ +++GL R +
Sbjct: 300 EEAG-VAPNVVTFNTVIDGLGMCGRYDEAF-MFKEKMVERGMEPTLITYSILVKGLTRAK 357

Query: 366 RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYA 425
           R+ +A  V   M   G   +   Y  +ID   E+  L++A    D +V       +  Y 
Sbjct: 358 RIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYN 417

Query: 426 AMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN 485
            +IKG C++G+   A   L E++  G   N   +  VI   C   M   A + + EM   
Sbjct: 418 TLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLR 477

Query: 486 GLNP 489
            ++P
Sbjct: 478 NMSP 481



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 105/218 (48%), Gaps = 15/218 (6%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C   R  E  + F +M S+   PN V Y  LI  YCR+G + +A ++ ++M+H G+
Sbjct: 630 IDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGI 689

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PNS TY+ L++G+     VE A +L    +E M+ E  L  N   +  L+D   + G +
Sbjct: 690 SPNSATYTSLIKGMSIISRVEEAKLL----FEEMRME-GLEPNVFHYTALIDGYGKLGQM 744

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +V  +  +M        +     MI    R G    ASR++  MR++G+ P  ++Y   
Sbjct: 745 VKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEF 804

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEG 218
           ++G  K GG + A++             E  Y  ++EG
Sbjct: 805 IYGYLKQGGVLEAFK----------GSDEENYAAIIEG 832


>gi|302794977|ref|XP_002979252.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
 gi|300153020|gb|EFJ19660.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
          Length = 702

 Score =  205 bits (521), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 134/493 (27%), Positives = 253/493 (51%), Gaps = 16/493 (3%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           R  EAH+L  +       PN + YTT+I+G+C+ G++D A+++ DEM+  GV  + L +S
Sbjct: 91  RHEEAHRLLKEELEPLCFPNEIMYTTVINGFCKAGQVDQAFELLDEMKERGVKMDVLLHS 150

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
            L++G+ R   ++ A     + ++ M EE   S N   +  +V+ LC+   ++E   + +
Sbjct: 151 TLIQGLCRKGRIDEA----LEQFKSMGEE--CSPNVITYNTVVNGLCKANRIDEALELFD 204

Query: 129 DMPQGKSVN-----EEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           DM +    +     +  +   +ID+LC++ R   A      MR  G  P++V+Y+S++ G
Sbjct: 205 DMEKRYEASHGCEPDVISYSTVIDALCKAQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDG 264

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LCK        +LL    + G+  +   +  ++  L    + EKA +  + +L       
Sbjct: 265 LCKVDRPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFFERLLKSGKKPN 324

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               N+ +  LC      E   +L+ M++++  PDVIT +++I+GFCK GR+++A  V  
Sbjct: 325 VVTYNVAVHGLCKAGRVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKADDVFT 384

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            M+  + C P  VTF T++ G     + +EA   +++ M   G+ PG+ TYN ++  +  
Sbjct: 385 RMMVHE-CIPHPVTFMTLLHGFSEHKKSREAFR-VHEDMVNAGFIPGLQTYNVLMDCVCG 442

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
              VE A E+++ M       D  TYA +I  LC + ++DEAK F D +   + + +  +
Sbjct: 443 ADSVESALEIYHKMKRKKRQPDCNTYAPLIQCLCRARRVDEAKEFLDVMEADNVVPNGAI 502

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
             A+++ LC+ G++ EA   L  +V+ G  P    + ++++   +L ++++     + +R
Sbjct: 503 CHALVEVLCKQGEVDEACSVLDNVVEVGCQPLGETFKILVE---ELYLRKKWEAASKLLR 559

Query: 484 KNGLNPDAVTWRI 496
             G   DA T+ +
Sbjct: 560 SPGFVADAATYSL 572



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 135/529 (25%), Positives = 232/529 (43%), Gaps = 75/529 (14%)

Query: 4   LCGLSRVGEAHKLFFDMKSR-----GHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHC 58
           LC  +R+ EA +LF DM+ R     G  P+V+SY+T+I   C+   +D AY+ F  MR  
Sbjct: 190 LCKANRIDEALELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQRVDKAYEYFKRMRAV 249

Query: 59  GVLPNSLTYSVLVRGVLRTR-------------------DVERANVLMFKLWERMKEEED 99
           G  PN +TYS L+ G+ +                     ++   N ++  LW+  ++E+ 
Sbjct: 250 GCAPNVVTYSSLIDGLCKVDRPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKA 309

Query: 100 LSV-----------NNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDS 148
                         N   +   V  LC+ G V+E +RI  +M + K   +      +ID 
Sbjct: 310 CQFFERLLKSGKKPNVVTYNVAVHGLCKAGRVDEAYRILLEMVESKVTPDVITYSSIIDG 369

Query: 149 LCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPS 208
            C++GR   A  V   M      P  V++ +++HG  +H     A+++ E+ +  G++P 
Sbjct: 370 FCKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIPG 429

Query: 209 EHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLV 268
             TY VL++ +CG   +E A ++   M  KK                             
Sbjct: 430 LQTYNVLMDCVCGADSVESALEIYHKMKRKKR---------------------------- 461

Query: 269 FMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNV 328
                  QPD  T   +I   C+  R++EA + L+ M A     P+      ++  L   
Sbjct: 462 -------QPDCNTYAPLIQCLCRARRVDEAKEFLDVMEADNV-VPNGAICHALVEVLCKQ 513

Query: 329 GRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTT 388
           G + EA ++L  V+ + G  P   T+  ++  L+  ++ E A ++       G VAD+ T
Sbjct: 514 GEVDEACSVLDNVV-EVGCQPLGETFKILVEELYLRKKWEAASKLLR---SPGFVADAAT 569

Query: 389 YAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELV 448
           Y++ +  +C++ + DEA    + +V      D   Y A+++ LC   ++  A+    ++ 
Sbjct: 570 YSLCVAEICKAGKPDEAVEVIEQMVLKGVRPDEGTYVAVLRSLCGLDRVESAIAEFEKMA 629

Query: 449 DSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
             G  P +V Y ++I  AC   M  EA++I   M   G  P A T R L
Sbjct: 630 SRGCAPGLVTYTLLIGEACSADMADEAFRIFEAMVAAGFTPQAQTMRTL 678



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 119/448 (26%), Positives = 202/448 (45%), Gaps = 45/448 (10%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   RV +A++ F  M++ G  PNVV+Y++LI G C+        ++   M+  G 
Sbjct: 227 IDALCKAQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRPSECLELLLHMKEKGF 286

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             N + ++ ++  + +  + E+A     +L +  K+   ++ N A     V  LC+ G V
Sbjct: 287 GINIIDFNAMLHALWKNDEQEKACQFFERLLKSGKKPNVVTYNVA-----VHGLCKAGRV 341

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E +RI  +M + K   +      +ID  C++GR   A  V   M      P  V++ ++
Sbjct: 342 DEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTL 401

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +HG  +H     A+++ E+ +  G++P   TY VL++ +CG   +E A ++   M  KK 
Sbjct: 402 LHGFSEHKKSREAFRVHEDMVNAGFIPGLQTYNVLMDCVCGADSVESALEIYHKMKRKK- 460

Query: 241 VDRTRICNIY---LRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
             R   CN Y   ++ LC  +   E    L  M      P+    + ++   CK G ++E
Sbjct: 461 --RQPDCNTYAPLIQCLCRARRVDEAKEFLDVMEADNVVPNGAICHALVEVLCKQGEVDE 518

Query: 298 ALKVLNDMVAGKFCAP--------------------------------DAVTFTTIIFGL 325
           A  VL+++V    C P                                DA T++  +  +
Sbjct: 519 ACSVLDNVVEVG-CQPLGETFKILVEELYLRKKWEAASKLLRSPGFVADAATYSLCVAEI 577

Query: 326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 385
              G+  EA+ ++ Q M  +G  P   TY AVLR L  L RVE A   F  M   G    
Sbjct: 578 CKAGKPDEAVEVIEQ-MVLKGVRPDEGTYVAVLRSLCGLDRVESAIAEFEKMASRGCAPG 636

Query: 386 STTYAIVIDGLCESNQLDEAKRFWDDIV 413
             TY ++I   C ++  DEA R ++ +V
Sbjct: 637 LVTYTLLIGEACSADMADEAFRIFEAMV 664



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 97/364 (26%), Positives = 186/364 (51%), Gaps = 10/364 (2%)

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
           + C  ++++  ++ R+  A R++    +    P+ + Y ++++G CK G   +A++LL+E
Sbjct: 77  YTCAVLLNAFVKAKRHEEAHRLLKEELEPLCFPNEIMYTTVINGFCKAGQVDQAFELLDE 136

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC-NIYLRALCLIK 258
             + G       +  L++GLC +  +++A +  QF    ++     I  N  +  LC   
Sbjct: 137 MKERGVKMDVLLHSTLIQGLCRKGRIDEALE--QFKSMGEECSPNVITYNTVVNGLCKAN 194

Query: 259 NPTELLNVLVFMLQTQ-----CQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAP 313
              E L +   M +       C+PDVI+ +TVI+  CK  R+++A +    M A   CAP
Sbjct: 195 RIDEALELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQRVDKAYEYFKRMRAVG-CAP 253

Query: 314 DAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEV 373
           + VT++++I GL  V R  E L LL   M ++G+   I+ +NA+L  L++    E+A + 
Sbjct: 254 NVVTYSSLIDGLCKVDRPSECLELLLH-MKEKGFGINIIDFNAMLHALWKNDEQEKACQF 312

Query: 374 FNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR 433
           F  +L  G   +  TY + + GLC++ ++DEA R   ++V      D   Y+++I G C+
Sbjct: 313 FERLLKSGKKPNVVTYNVAVHGLCKAGRVDEAYRILLEMVESKVTPDVITYSSIIDGFCK 372

Query: 434 SGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVT 493
           +G++ +A      ++     P+ V +  ++ G  +    REA+++  +M   G  P   T
Sbjct: 373 AGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQT 432

Query: 494 WRIL 497
           + +L
Sbjct: 433 YNVL 436



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/237 (29%), Positives = 124/237 (52%), Gaps = 10/237 (4%)

Query: 276 QPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEAL 335
           Q +  T   ++N F K  R EEA ++L + +    C P+ + +TT+I G    G++ +A 
Sbjct: 73  QHNAYTCAVLLNAFVKAKRHEEAHRLLKEELE-PLCFPNEIMYTTVINGFCKAGQVDQAF 131

Query: 336 NLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG 395
            LL + M +RG    ++ ++ +++GL R  R++EA E F  M G     +  TY  V++G
Sbjct: 132 ELLDE-MKERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSM-GEECSPNVITYNTVVNG 189

Query: 396 LCESNQLDEAKRFWDDIVWPSNIH-----DNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 450
           LC++N++DEA   +DD+            D   Y+ +I  LC++ ++ +A  +   +   
Sbjct: 190 LCKANRIDEALELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQRVDKAYEYFKRMRAV 249

Query: 451 GVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGND 507
           G  PN+V Y+ +IDG CK+    E  ++L  M++ G   + + +  +  LH    ND
Sbjct: 250 GCAPNVVTYSSLIDGLCKVDRPSECLELLLHMKEKGFGINIIDFNAM--LHALWKND 304



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/160 (21%), Positives = 71/160 (44%), Gaps = 40/160 (25%)

Query: 381 GVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEA 440
           G   ++ T A++++   ++ + +EA R   + + P    +  +Y  +I G C++G++ +A
Sbjct: 71  GFQHNAYTCAVLLNAFVKAKRHEEAHRLLKEELEPLCFPNEIMYTTVINGFCKAGQVDQA 130

Query: 441 VHFLYELVDSGV----------------------------------TPNIVCYNVVIDGA 466
              L E+ + GV                                  +PN++ YN V++G 
Sbjct: 131 FELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSMGEECSPNVITYNTVVNGL 190

Query: 467 CKLSMKREAYQILREMRK-----NGLNPDAVTWR-ILDKL 500
           CK +   EA ++  +M K     +G  PD +++  ++D L
Sbjct: 191 CKANRIDEALELFDDMEKRYEASHGCEPDVISYSTVIDAL 230



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 65/151 (43%), Gaps = 11/151 (7%)

Query: 356 AVLRGLFRLRRVEEAKEVFNCMLGIG--VVADSTTYAIVIDGLCES---NQLDEAKRFWD 410
           A+ RG   LR  ++  E+   +L  G  +  D   YA  +          Q+++    W 
Sbjct: 4   AIARGF--LRPTQDVAEILLGILKPGPYLCRDLAGYASTVTPEVAGRVLQQVEDPDVAWT 61

Query: 411 DIVW----PSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466
              W    P   H+ Y  A ++    ++ +  EA   L E ++    PN + Y  VI+G 
Sbjct: 62  FFQWAGNKPGFQHNAYTCAVLLNAFVKAKRHEEAHRLLKEELEPLCFPNEIMYTTVINGF 121

Query: 467 CKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           CK     +A+++L EM++ G+  D +    L
Sbjct: 122 CKAGQVDQAFELLDEMKERGVKMDVLLHSTL 152


>gi|449435202|ref|XP_004135384.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g22960, mitochondrial-like [Cucumis sativus]
          Length = 717

 Score =  204 bits (520), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 140/499 (28%), Positives = 242/499 (48%), Gaps = 20/499 (4%)

Query: 10  VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSV 69
           + +A  ++  M+  G  P VV+Y T++  YC+ G +D A ++  EM+  G  PN +TY+V
Sbjct: 196 LSKAKNVYGMMEQFGIKPTVVTYNTMLDSYCKEGRVDQALELLSEMQERGCYPNDVTYNV 255

Query: 70  LVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAED 129
           LV G+ +  ++E+A  L+ ++         L+V+   +  L++  C++G   E F + E+
Sbjct: 256 LVNGLSKKGELEQAKGLIEEMLN-----SGLNVSAYTYNPLINGFCQKGLFVEAFDLVEE 310

Query: 130 MPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG 189
           M   ++         ++  LC+  +  G       M K   TP +VS+NS+++G C+ G 
Sbjct: 311 MVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKFTPDIVSFNSLLYGYCRTGC 370

Query: 190 CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNI 249
              A+ L +E      +P+  TY  L+ GLC    L+ A +     L K+  D+    +I
Sbjct: 371 ISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDAALR-----LKKEMTDQGLFPDI 425

Query: 250 YLRALCLIKNPTELLNVLVF------MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
           +   + L+    +L  V +       ML    +PD    NT I G  K+     A  +  
Sbjct: 426 FTYTI-LVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNTRIVGEMKIADTSVAFSMQE 484

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           +M+A  F  PD +T+   +  L   G  +EA +LL + M   G  P  VTY +++ G  +
Sbjct: 485 EMLAAGF-PPDVITYNVFVHALCQQGNFEEACDLL-ENMVSDGLIPDHVTYTSIINGFVK 542

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
              + +A+EVFN ML  GV     TY ++I        LD A  ++  ++  S   +   
Sbjct: 543 NGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPANVIT 602

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y A+I GLC + ++ EA  +  E+ + G+ PN   Y ++I+ +C +    EA ++ REM 
Sbjct: 603 YNAIINGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILINESCNMGYWEEALRLYREML 662

Query: 484 KNGLNPDAVTWRI-LDKLH 501
              + PD+ T  + L  LH
Sbjct: 663 DRKIQPDSFTHSVFLKNLH 681



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 128/463 (27%), Positives = 223/463 (48%), Gaps = 7/463 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C   RV +A +L  +M+ RG  PN V+Y  L++G  + GE++ A  + +EM + G+
Sbjct: 222 LDSYCKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGL 281

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             ++ TY+ L+ G  +      A    F L E M          + +  L+  LC+   V
Sbjct: 282 NVSAYTYNPLINGFCQKGLFVEA----FDLVEEMVNRRAFP-TLSTYNTLMYGLCKWVQV 336

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
             V     DM + K   +  +   ++   CR+G    A  +   ++ R L P++++YN++
Sbjct: 337 TGVRLRFSDMLKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTL 396

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +HGLC  G    A +L +E    G  P   TY +LV G      +  AR     MLSK  
Sbjct: 397 IHGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGL 456

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                  N  +     I + +   ++   ML     PDVIT N  ++  C+ G  EEA  
Sbjct: 457 KPDRFAYNTRIVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEACD 516

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +L +MV+     PD VT+T+II G +  G +++A   ++  M  +G +P +VTY  ++  
Sbjct: 517 LLENMVSDGL-IPDHVTYTSIINGFVKNGHLRKARE-VFNEMLSKGVAPSVVTYTVLIHA 574

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
               + ++ A   F+ ML   V A+  TY  +I+GLC + ++DEA +++D++     + +
Sbjct: 575 HAAKQMLDLAFMYFSKMLEKSVPANVITYNAIINGLCMTRRMDEAYKYFDEMEEKGILPN 634

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463
            + Y  +I   C  G   EA+    E++D  + P+   ++V +
Sbjct: 635 KFSYTILINESCNMGYWEEALRLYREMLDRKIQPDSFTHSVFL 677



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 103/371 (27%), Positives = 167/371 (45%), Gaps = 7/371 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M  LC   +V      F DM      P++VS+ +L++GYCRTG +  A+ +FDE++   +
Sbjct: 327 MYGLCKWVQVTGVRLRFSDMLKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDL 386

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P  +TY+ L+ G+     ++ A     +L + M  ++ L  +   +  LV+   + GYV
Sbjct: 387 VPTVITYNTLIHGLCMWGYLDAA----LRLKKEMT-DQGLFPDIFTYTILVNGCFKLGYV 441

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +       +M       + FA    I    +      A  +   M   G  P +++YN  
Sbjct: 442 SMARGFFNEMLSKGLKPDRFAYNTRIVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVF 501

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           VH LC+ G    A  LLE  +  G +P   TY  ++ G      L KAR+V   MLSK  
Sbjct: 502 VHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEMLSKGV 561

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                   + + A    +           ML+     +VIT N +ING C   R++EA K
Sbjct: 562 APSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPANVITYNAIINGLCMTRRMDEAYK 621

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
             ++M   K   P+  ++T +I    N+G  +EAL  LY+ M  R   P   T++  L+ 
Sbjct: 622 YFDEM-EEKGILPNKFSYTILINESCNMGYWEEALR-LYREMLDRKIQPDSFTHSVFLKN 679

Query: 361 LFRLRRVEEAK 371
           L R  +V   +
Sbjct: 680 LHRDYQVHAVQ 690



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 95/349 (27%), Positives = 164/349 (46%), Gaps = 37/349 (10%)

Query: 158 ASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVE 217
           A  V  +M + G+ P++V+YN+++   CK G   +A +LL E  + G  P++ TY VLV 
Sbjct: 199 AKNVYGMMEQFGIKPTVVTYNTMLDSYCKEGRVDQALELLSEMQERGCYPNDVTYNVLVN 258

Query: 218 GLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQP 277
           GL  + +LE+A+ +++ ML+                          LNV  +        
Sbjct: 259 GLSKKGELEQAKGLIEEMLNSG------------------------LNVSAY-------- 286

Query: 278 DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNL 337
              T N +INGFC+ G   EA  ++ +MV  +   P   T+ T+++GL    ++   + L
Sbjct: 287 ---TYNPLINGFCQKGLFVEAFDLVEEMVNRR-AFPTLSTYNTLMYGLCKWVQVT-GVRL 341

Query: 338 LYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLC 397
            +  M +  ++P IV++N++L G  R   + EA  +F+ +    +V    TY  +I GLC
Sbjct: 342 RFSDMLKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLC 401

Query: 398 ESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIV 457
               LD A R   ++       D + Y  ++ G  + G +  A  F  E++  G+ P+  
Sbjct: 402 MWGYLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRF 461

Query: 458 CYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
            YN  I G  K++    A+ +  EM   G  PD +T+ +       +GN
Sbjct: 462 AYNTRIVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGN 510



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 78/161 (48%)

Query: 337 LLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 396
           L++  M + G  P +   N +LR L     + +AK V+  M   G+     TY  ++D  
Sbjct: 166 LVFDKMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDSY 225

Query: 397 CESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNI 456
           C+  ++D+A     ++       ++  Y  ++ GL + G++ +A   + E+++SG+  + 
Sbjct: 226 CKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSA 285

Query: 457 VCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
             YN +I+G C+  +  EA+ ++ EM      P   T+  L
Sbjct: 286 YTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTL 326


>gi|242042646|ref|XP_002459194.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
 gi|241922571|gb|EER95715.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
          Length = 847

 Score =  204 bits (520), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 139/510 (27%), Positives = 255/510 (50%), Gaps = 16/510 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEM--RHC 58
           MD L   +   +AHK++  M S G  P+  ++T  I  +C TG   VA ++   +  R C
Sbjct: 17  MDALVNTAYHDQAHKVYVRMLSAGVAPDARTHTVRIKSFCITGRPHVALRLLRSLPERGC 76

Query: 59  GVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREG 118
            V P  L Y  +VRG+        A  L  ++  R     D+  + A F N++ +LC++G
Sbjct: 77  DVKP--LAYCTVVRGLYAHGHGYDARHLFDEMLRR-----DVFPDVATFNNVLHALCQKG 129

Query: 119 YVNEV-FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
            + E    +A+ + +G SVN+ F C   I  LC  GR   A  +V  M    + P +V+Y
Sbjct: 130 DIMESGALLAKVLKRGMSVNK-FTCNIWIRGLCEGGRLEEAVALVESMDAY-IAPDVVTY 187

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
           N+++ GLCK      A Q L   +  G +P + TY  +++G C    L++A ++L+  + 
Sbjct: 188 NTLMRGLCKDSKVQEAAQYLRRMMNQGCIPDDFTYNTIIDGYCKRDMLQEATELLKDAIF 247

Query: 238 KKDV-DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIE 296
           K  V DR   C++ +  LC   +    L +         +PD++  N+++ G C+ G I 
Sbjct: 248 KGFVPDRVTYCSL-INGLCAEGDVERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLIL 306

Query: 297 EALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
            AL+V+N+MV    C PD  T+  +I GL  +G I +A  ++   +  +GY P + T+N 
Sbjct: 307 HALQVMNEMVEDG-CHPDIWTYNIVINGLCKMGNISDAAVVMNDAI-VKGYLPDVFTFNT 364

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416
           ++ G  +  +++ A ++   M   G+  D+ TY  V++GLC++ +  E    +++++   
Sbjct: 365 MIDGYCKRLKLDSALQLVERMWMYGIAPDAITYNSVLNGLCKAGKAKEVNETFEEMILKG 424

Query: 417 NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAY 476
              +   Y  +I+  C+  ++ EA   +  +   G+ P+ + +N +I G C+      AY
Sbjct: 425 CRPNAITYNILIENFCKINQLEEASGVIVRMSQDGLVPDTISFNTLIHGFCRNGDLDGAY 484

Query: 477 QILREMRKNGLNPDAVTWRILDKLHGNRGN 506
            + +++ + G +  A T+ IL   + ++ N
Sbjct: 485 LLFQKLDEKGYSATADTFNILIGAYSSKLN 514



 Score =  178 bits (451), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 134/512 (26%), Positives = 238/512 (46%), Gaps = 28/512 (5%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R+ EA  L   M +    P+VV+Y TL+ G C+  ++  A +    M + G +P+
Sbjct: 160 LCEGGRLEEAVALVESMDAY-IAPDVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQGCIPD 218

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEE--EDLSVNNAAFANLVDSLCREGYVN 121
             TY+ ++ G  +   ++ A        E +K+   +    +   + +L++ LC EG V 
Sbjct: 219 DFTYNTIIDGYCKRDMLQEAT-------ELLKDAIFKGFVPDRVTYCSLINGLCAEGDVE 271

Query: 122 EVFRIAEDMPQGKSVNEEFAC-GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
               +  +  Q K +  +      ++  LCR G    A +V+  M + G  P + +YN +
Sbjct: 272 RALELFNE-AQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEDGCHPDIWTYNIV 330

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++GLCK G    A  ++ + I  GYLP   T+  +++G C    L+ A ++++ M     
Sbjct: 331 INGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTMIDGYCKRLKLDSALQLVERMWMYGI 390

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                  N  L  LC      E+      M+   C+P+ IT N +I  FCK+ ++EEA  
Sbjct: 391 APDAITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASG 450

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           V+  M       PD ++F T+I G    G +  A  LL+Q + ++GYS    T+N ++  
Sbjct: 451 VIVRMSQDGL-VPDTISFNTLIHGFCRNGDLDGAY-LLFQKLDEKGYSATADTFNILIGA 508

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
                 ++ A+++F  M+  G   D  TY +++DG C++  +D A     ++V    +  
Sbjct: 509 YSSKLNMQMAEKIFGEMISKGYKPDLYTYRVLVDGSCKAANVDRAYVHLAEMVSKGFVPS 568

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID----GACKL----SMK 472
              +  ++  L  + ++ EAV  ++ +V  GV P +V   +  D     A K+     MK
Sbjct: 569 MATFGRVLNSLAMNHRVSEAVAIIHIMVRMGVVPEVVDTILSTDKKEIAAPKILVEELMK 628

Query: 473 R-----EAYQILRE-MRKNGLNPDAVTWRILD 498
           +       Y++L E +R N L   A  WR+ D
Sbjct: 629 KGHISYPTYEVLHEGVRDNKLTRKARKWRLSD 660



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 105/392 (26%), Positives = 182/392 (46%), Gaps = 38/392 (9%)

Query: 106 AFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVM 165
           A+  ++D+L    Y ++  ++   M       +       I S C +GR H A R++  +
Sbjct: 12  AYNAIMDALVNTAYHDQAHKVYVRMLSAGVAPDARTHTVRIKSFCITGRPHVALRLLRSL 71

Query: 166 RKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDL 225
            +RG     ++Y ++V GL  HG    A  L +E ++    P   T+  ++  LC + D+
Sbjct: 72  PERGCDVKPLAYCTVVRGLYAHGHGYDARHLFDEMLRRDVFPDVATFNNVLHALCQKGDI 131

Query: 226 EKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTV 285
            ++  +L  +L +        CNI++R                                 
Sbjct: 132 MESGALLAKVLKRGMSVNKFTCNIWIR--------------------------------- 158

Query: 286 INGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQR 345
             G C+ GR+EEA+ ++  M A  + APD VT+ T++ GL    ++QEA   L ++M Q 
Sbjct: 159 --GLCEGGRLEEAVALVESMDA--YIAPDVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQ- 213

Query: 346 GYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA 405
           G  P   TYN ++ G  +   ++EA E+    +  G V D  TY  +I+GLC    ++ A
Sbjct: 214 GCIPDDFTYNTIIDGYCKRDMLQEATELLKDAIFKGFVPDRVTYCSLINGLCAEGDVERA 273

Query: 406 KRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDG 465
              +++        D  VY +++KGLCR G I  A+  + E+V+ G  P+I  YN+VI+G
Sbjct: 274 LELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEDGCHPDIWTYNIVING 333

Query: 466 ACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            CK+    +A  ++ +    G  PD  T+  +
Sbjct: 334 LCKMGNISDAAVVMNDAIVKGYLPDVFTFNTM 365



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 90/330 (27%), Positives = 161/330 (48%), Gaps = 5/330 (1%)

Query: 169 GLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKA 228
           G  P+  +YN+I+  L       +A+++    +  G  P   T+ V ++  C       A
Sbjct: 5   GCPPAAPAYNAIMDALVNTAYHDQAHKVYVRMLSAGVAPDARTHTVRIKSFCITGRPHVA 64

Query: 229 RKVLQFMLSKK-DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVIN 287
            ++L+ +  +  DV     C + +R L    +  +  ++   ML+    PDV T N V++
Sbjct: 65  LRLLRSLPERGCDVKPLAYCTV-VRGLYAHGHGYDARHLFDEMLRRDVFPDVATFNNVLH 123

Query: 288 GFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGY 347
             C+ G I E+  +L   V  +  + +  T    I GL   GR++EA+ L+  +      
Sbjct: 124 ALCQKGDIMESGALLAK-VLKRGMSVNKFTCNIWIRGLCEGGRLEEAVALVESM--DAYI 180

Query: 348 SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKR 407
           +P +VTYN ++RGL +  +V+EA +    M+  G + D  TY  +IDG C+ + L EA  
Sbjct: 181 APDVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQGCIPDDFTYNTIIDGYCKRDMLQEATE 240

Query: 408 FWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGAC 467
              D ++   + D   Y ++I GLC  G +  A+    E     + P++V YN ++ G C
Sbjct: 241 LLKDAIFKGFVPDRVTYCSLINGLCAEGDVERALELFNEAQAKDLKPDLVVYNSLVKGLC 300

Query: 468 KLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           +  +   A Q++ EM ++G +PD  T+ I+
Sbjct: 301 RQGLILHALQVMNEMVEDGCHPDIWTYNIV 330


>gi|302770561|ref|XP_002968699.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
 gi|300163204|gb|EFJ29815.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
          Length = 544

 Score =  204 bits (520), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 144/500 (28%), Positives = 240/500 (48%), Gaps = 54/500 (10%)

Query: 6   GLSRVGEAHK---LFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           G  + G+ H+   +F DMKS G +PN  +  TL+ G C  G+M  A K+F EM+    LP
Sbjct: 41  GFCKGGQMHQAVSVFSDMKSSGLLPNASTMNTLLLGLCEIGQMSSALKLFREMQAGPFLP 100

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREG-YVN 121
            S ++++L+RG      V  A   +  L +  K     SV    +  ++  LC E    N
Sbjct: 101 TSASHNILLRGFFMAGRVRDA---LAHLQDMRKSSS--SVATGTYNLVLKGLCWENKSAN 155

Query: 122 EVFRIAEDMPQGKS--VNEEFACGH-MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
            + +  E   + K+  V  +    H ++ +L  SGR   A  +   M     +P +++YN
Sbjct: 156 RLEQAMEFFKEMKASGVEPDLESYHILLSALSDSGRMAEAHALFSAMT---CSPDIMTYN 212

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
            ++ G CK G    A  L++E ++ GY P+  TY +++   C    +E+A +V  FM   
Sbjct: 213 VLMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTYSIIINCYCKLDKVEEAWEV--FMK-- 268

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
                                          M+++ C P+ +T NT+I GFCK G +E+A
Sbjct: 269 -------------------------------MIESNCVPNAVTFNTLIAGFCKAGMLEDA 297

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNV-GRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           +K+  +M     C    VT+ T+I  L    G +  A++ L+  +   G +P IVTYN++
Sbjct: 298 IKLFAEM-EKIGCKATIVTYNTLIDSLCKKRGGVYTAVD-LFNKLEGAGLTPTIVTYNSL 355

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 417
           ++G    RR+ EA + F+ M G     +  TY+I+IDGLC+  ++ EA +  +D+     
Sbjct: 356 IQGFCDARRLSEAMQYFDEMEG-KCAPNVITYSILIDGLCKVRRMKEAAKTLEDMKAHGY 414

Query: 418 IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQ 477
                 Y  +I G C+ G++  A+ F  ++  +G  PN V +N +IDG CK     +  +
Sbjct: 415 TPTVVTYGGLINGFCKCGELKSALLFFEKMKLAGCAPNTVIFNTLIDGLCKAERANDGLR 474

Query: 478 ILREMRKNGLNPDAVTWRIL 497
           +L  M   G  PD +T+  L
Sbjct: 475 LLCHMHAEGCKPDVITYNCL 494



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 120/406 (29%), Positives = 188/406 (46%), Gaps = 56/406 (13%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           R+ EAH LF  M      P++++Y  L+ GYC+ G+   A  +  E+   G  PN  TYS
Sbjct: 191 RMAEAHALFSAMTCS---PDIMTYNVLMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTYS 247

Query: 69  VLVRGVLRTRDVERANVLMFKLWE-RMKEEEDLSVNNA-AFANLVDSLCREGYVNEVFRI 126
           +++    +   VE A       WE  MK  E   V NA  F  L+   C+ G + +  ++
Sbjct: 248 IIINCYCKLDKVEEA-------WEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDAIKL 300

Query: 127 AEDMPQGKSVNEEFACGHMIDSLCRS-GRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLC 185
             +M +            +IDSLC+  G  + A  +   +   GLTP++V+YNS++ G C
Sbjct: 301 FAEMEKIGCKATIVTYNTLIDSLCKKRGGVYTAVDLFNKLEGAGLTPTIVTYNSLIQGFC 360

Query: 186 KHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTR 245
                  A Q  +E ++    P+  TY +L++GLC    +++A K L+ M +        
Sbjct: 361 DARRLSEAMQYFDE-MEGKCAPNVITYSILIDGLCKVRRMKEAAKTLEDMKAHGYT---- 415

Query: 246 ICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM 305
                                          P V+T   +INGFCK G ++ AL     M
Sbjct: 416 -------------------------------PTVVTYGGLINGFCKCGELKSALLFFEKM 444

Query: 306 -VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
            +AG  CAP+ V F T+I GL    R  + L LL   M   G  P ++TYN ++ GL   
Sbjct: 445 KLAG--CAPNTVIFNTLIDGLCKAERANDGLRLLCH-MHAEGCKPDVITYNCLISGLCSA 501

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD 410
            RVE+A+ +F+   G+    + TT+  +I GLC   +++EA+   D
Sbjct: 502 NRVEDAQRLFD---GMACAPNVTTFNFLIRGLCAQKKVEEARNILD 544



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 124/484 (25%), Positives = 222/484 (45%), Gaps = 25/484 (5%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC + ++  A KLF +M++   +P   S+  L+ G+   G +  A     +MR       
Sbjct: 77  LCEIGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMAGRVRDALAHLQDMRKSSSSVA 136

Query: 64  SLTYSVLVRGVL-RTRDVERANVLM--FKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           + TY+++++G+    +   R    M  FK  +    E DL   +   + L DS  R    
Sbjct: 137 TGTYNLVLKGLCWENKSANRLEQAMEFFKEMKASGVEPDLESYHILLSALSDS-GRMAEA 195

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           + +F      P   + N       ++D  C+ G+ + A  ++  + K G  P++ +Y+ I
Sbjct: 196 HALFSAMTCSPDIMTYNV------LMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTYSII 249

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++  CK      A+++  + I+   +P+  T+  L+ G C    LE A K+   M  K  
Sbjct: 250 INCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEM-EKIG 308

Query: 241 VDRTRIC-NIYLRALCL----IKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 295
              T +  N  + +LC     +    +L N L     T   P ++T N++I GFC   R+
Sbjct: 309 CKATIVTYNTLIDSLCKKRGGVYTAVDLFNKLEGAGLT---PTIVTYNSLIQGFCDARRL 365

Query: 296 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN 355
            EA++  ++M  GK CAP+ +T++ +I GL  V R++EA   L + M   GY+P +VTY 
Sbjct: 366 SEAMQYFDEM-EGK-CAPNVITYSILIDGLCKVRRMKEAAKTL-EDMKAHGYTPTVVTYG 422

Query: 356 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP 415
            ++ G  +   ++ A   F  M   G   ++  +  +IDGLC++ + ++  R    +   
Sbjct: 423 GLINGFCKCGELKSALLFFEKMKLAGCAPNTVIFNTLIDGLCKAERANDGLRLLCHMHAE 482

Query: 416 SNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREA 475
               D   Y  +I GLC + ++ +A      +      PN+  +N +I G C      EA
Sbjct: 483 GCKPDVITYNCLISGLCSANRVEDAQRLFDGM---ACAPNVTTFNFLIRGLCAQKKVEEA 539

Query: 476 YQIL 479
             IL
Sbjct: 540 RNIL 543



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 90/324 (27%), Positives = 155/324 (47%), Gaps = 44/324 (13%)

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
           N+++ GL       +A +L +E +   + P+ HTY VL+ G C    + +A  V   M S
Sbjct: 1   NALLSGLVSARKHDQALRLFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKS 60

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
                                  + LL            P+  T+NT++ G C++G++  
Sbjct: 61  -----------------------SGLL------------PNASTMNTLLLGLCEIGQMSS 85

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           ALK+  +M AG F  P + +   ++ G    GR+++AL  L Q M +   S    TYN V
Sbjct: 86  ALKLFREMQAGPF-LPTSASHNILLRGFFMAGRVRDALAHL-QDMRKSSSSVATGTYNLV 143

Query: 358 LRGLF----RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413
           L+GL        R+E+A E F  M   GV  D  +Y I++  L +S ++ EA   +  + 
Sbjct: 144 LKGLCWENKSANRLEQAMEFFKEMKASGVEPDLESYHILLSALSDSGRMAEAHALFSAMT 203

Query: 414 WPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKR 473
              +I     Y  ++ G C+ G+ +EA   + E++ +G  PN+  Y+++I+  CKL    
Sbjct: 204 CSPDI---MTYNVLMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTYSIIINCYCKLDKVE 260

Query: 474 EAYQILREMRKNGLNPDAVTWRIL 497
           EA+++  +M ++   P+AVT+  L
Sbjct: 261 EAWEVFMKMIESNCVPNAVTFNTL 284



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 135/299 (45%), Gaps = 8/299 (2%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C L +V EA ++F  M     VPN V++ TLI G+C+ G ++ A K+F EM   G     
Sbjct: 254 CKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGCKATI 313

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           +TY+ L+  + + R      V +F   E       L+     + +L+   C    ++E  
Sbjct: 314 VTYNTLIDSLCKKRGGVYTAVDLFNKLEG----AGLTPTIVTYNSLIQGFCDARRLSEAM 369

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
           +  ++M +GK          +ID LC+  R   A++ +  M+  G TP++V+Y  +++G 
Sbjct: 370 QYFDEM-EGKCAPNVITYSILIDGLCKVRRMKEAAKTLEDMKAHGYTPTVVTYGGLINGF 428

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
           CK G    A    E+    G  P+   +  L++GLC         ++L  M ++      
Sbjct: 429 CKCGELKSALLFFEKMKLAGCAPNTVIFNTLIDGLCKAERANDGLRLLCHMHAEGCKPDV 488

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
              N  +  LC      +   +   M    C P+V T N +I G C   ++EEA  +L+
Sbjct: 489 ITYNCLISGLCSANRVEDAQRLFDGM---ACAPNVTTFNFLIRGLCAQKKVEEARNILD 544


>gi|356529495|ref|XP_003533326.1| PREDICTED: uncharacterized protein LOC100779660 [Glycine max]
          Length = 1205

 Score =  204 bits (520), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 141/513 (27%), Positives = 250/513 (48%), Gaps = 16/513 (3%)

Query: 3   QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           Q   +  V +A   F  M    H P ++ +  ++  + +      A  +   +   G+ P
Sbjct: 33  QPPSIQNVDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQP 92

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           + +T ++L+        +     ++ K+ +R    + +++N      L+  LC +G V +
Sbjct: 93  DLITLNILINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNT-----LIKGLCLKGQVKK 147

Query: 123 VFRIAEDM-PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
                + +  QG  +N+  + G +I+ +C+ G    A +++  +  R   P++V Y++I+
Sbjct: 148 ALHFHDKLLAQGFQLNQ-VSYGTLINGVCKIGDTRAAIKLLQKIDGRLTKPNVVMYSTII 206

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
             LCK+     AY L  E    G      TY  L+ G C E  L++A  +L  M+ K   
Sbjct: 207 DALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTIN 266

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
                 NI + ALC      E  +VL  ML+   +PDVIT +T+++G+  +  +++A  V
Sbjct: 267 PNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHV 326

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
            N M +     PD  T+T +I G      + EALN L++ M Q+   PGIVTY++++ GL
Sbjct: 327 FNAM-SLMGVTPDVHTYTILINGFCKNKMVDEALN-LFKEMHQKNMVPGIVTYSSLIDGL 384

Query: 362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
            +  R+    ++ + M   G  A+  TY+ +IDGLC++  LD A   ++ +       + 
Sbjct: 385 CKSGRIPYVWDLIDEMHDRGQPANVITYSSLIDGLCKNGHLDRAIALFNKMKDQGIRPNT 444

Query: 422 YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
           + +  ++ GLC+ G++ +A     +L+  G   N+  YNV+IDG CK  +  EA  +L +
Sbjct: 445 FTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMIDGHCKQGLLEEALTMLSK 504

Query: 482 MRKNGLNPDAVTWRIL-------DKLHGNRGND 507
           M  NG  PDAVT+ I+       D+  GN G D
Sbjct: 505 MEDNGCIPDAVTFEIIIIALFKKDENGGNVGFD 537



 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 121/467 (25%), Positives = 235/467 (50%), Gaps = 15/467 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D    +     A  L   ++ +G  P++++   LI+ +C  G++   + V  ++   G 
Sbjct: 66  LDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGFSVLAKILKRGY 125

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+++T + L++G+     V++A     KL       +   +N  ++  L++ +C+ G  
Sbjct: 126 PPDTVTLNTLIKGLCLKGQVKKALHFHDKLL-----AQGFQLNQVSYGTLINGVCKIGDT 180

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
               ++ + +    +         +ID+LC+      A  +   M  +G++  +V+Y+++
Sbjct: 181 RAAIKLLQKIDGRLTKPNVVMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTL 240

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS--- 237
           ++G C  G    A  LL E +     P+ +TY +LV+ LC E  +++A+ VL  ML    
Sbjct: 241 IYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACV 300

Query: 238 KKDV-DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIE 296
           K DV   + + + Y   +  +K    + N +  M  T   PDV T   +INGFCK   ++
Sbjct: 301 KPDVITYSTLMDGYF-LVYEVKKAQHVFNAMSLMGVT---PDVHTYTILINGFCKNKMVD 356

Query: 297 EALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
           EAL +  +M   K   P  VT++++I GL   GRI    +L+ + M  RG    ++TY++
Sbjct: 357 EALNLFKEM-HQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDE-MHDRGQPANVITYSS 414

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416
           ++ GL +   ++ A  +FN M   G+  ++ T+ I++DGLC+  +L +A+  + D++   
Sbjct: 415 LIDGLCKNGHLDRAIALFNKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKG 474

Query: 417 NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463
              + Y Y  MI G C+ G + EA+  L ++ D+G  P+ V + ++I
Sbjct: 475 YHLNVYTYNVMIDGHCKQGLLEEALTMLSKMEDNGCIPDAVTFEIII 521



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 103/386 (26%), Positives = 172/386 (44%), Gaps = 70/386 (18%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    V EA+ LF +M  +G   +VV+Y+TLI+G+C  G++  A  + +EM    +
Sbjct: 206 IDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTI 265

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLM----------------------FKLWERMKEEE 98
            PN  TY++LV  + +   V+ A  ++                      F ++E  K + 
Sbjct: 266 NPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQH 325

Query: 99  --------DLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC 150
                    ++ +   +  L++  C+   V+E   + ++M Q   V        +ID LC
Sbjct: 326 VFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLC 385

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
           +SGR      ++  M  RG   ++++Y+S++ GLCK+G   RA  L  +    G  P+  
Sbjct: 386 KSGRIPYVWDLIDEMHDRGQPANVITYSSLIDGLCKNGHLDRAIALFNKMKDQGIRPNTF 445

Query: 211 TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM 270
           T+ +L++GLC    L+ A++V Q +L+K                                
Sbjct: 446 TFTILLDGLCKGGRLKDAQEVFQDLLTKG------------------------------- 474

Query: 271 LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL---- 326
                  +V T N +I+G CK G +EEAL +L+ M     C PDAVTF  II  L     
Sbjct: 475 ----YHLNVYTYNVMIDGHCKQGLLEEALTMLSKM-EDNGCIPDAVTFEIIIIALFKKDE 529

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIV 352
           N G +     +   V  ++G +P I 
Sbjct: 530 NGGNVGFDKKVWEIVEHKKGETPSIT 555



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/224 (29%), Positives = 117/224 (52%), Gaps = 4/224 (1%)

Query: 276  QPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEAL 335
            QPD+ TLN +IN FC MG+I     +L  ++   +  PD +TFTT+I GL   G++ +AL
Sbjct: 958  QPDLFTLNILINCFCHMGQITFNFSILAKILKRGY-HPDTITFTTLINGLCLKGQVNKAL 1016

Query: 336  NLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG 395
            +   +++ Q G+    V+Y  ++ G+ ++     A ++   + G     D   Y  +ID 
Sbjct: 1017 HFHDKLLAQ-GFQLNQVSYGTLINGVCKIGDTRAAIKLLRKIDGRLTKPDVVMYNTIIDA 1075

Query: 396  LCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN 455
            LC+   + +A   + ++       D   Y  +I G C  GK+ EA+  L ++V   + PN
Sbjct: 1076 LCKHQLVSKAYGLFFEMNVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNKMVLKTINPN 1135

Query: 456  IVCYNVVIDGACK--LSMKREAYQILREMRKNGLNPDAVTWRIL 497
            +  YN+++D  CK    +  E+  +L +M  NG   +AVT+ I+
Sbjct: 1136 VRTYNILVDALCKEGKDLLDESLSMLSKMEDNGCKANAVTFEII 1179



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 120/242 (49%), Gaps = 4/242 (1%)

Query: 248  NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA 307
            NI +   C +   T   ++L  +L+    PD IT  T+ING C  G++ +AL   + ++A
Sbjct: 965  NILINCFCHMGQITFNFSILAKILKRGYHPDTITFTTLINGLCLKGQVNKALHFHDKLLA 1024

Query: 308  GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRV 367
              F   + V++ T+I G+  +G  + A+ LL ++   R   P +V YN ++  L + + V
Sbjct: 1025 QGF-QLNQVSYGTLINGVCKIGDTRAAIKLLRKI-DGRLTKPDVVMYNTIIDALCKHQLV 1082

Query: 368  EEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAM 427
             +A  +F  M   G+ AD  TY  +I G C   +L EA    + +V  +   +   Y  +
Sbjct: 1083 SKAYGLFFEMNVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNKMVLKTINPNVRTYNIL 1142

Query: 428  IKGLCRSGK--IHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN 485
            +  LC+ GK  + E++  L ++ D+G   N V + ++I    +     +  ++L EM   
Sbjct: 1143 VDALCKEGKDLLDESLSMLSKMEDNGCKANAVTFEIIISALFEKDENDKVEKLLHEMIAR 1202

Query: 486  GL 487
            GL
Sbjct: 1203 GL 1204



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 135/293 (46%), Gaps = 16/293 (5%)

Query: 20   MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
            M  RG V +V +Y  + H   +     V+     E++  G+ P+  T ++L+        
Sbjct: 920  MAERG-VTSVGAYIRIPHNPMKHYSTAVSLSHRLELK--GIQPDLFTLNILINCFCHMGQ 976

Query: 80   VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDM-PQGKSVNE 138
            +     ++ K+ +R    + ++     F  L++ LC +G VN+     + +  QG  +N+
Sbjct: 977  ITFNFSILAKILKRGYHPDTIT-----FTTLINGLCLKGQVNKALHFHDKLLAQGFQLNQ 1031

Query: 139  EFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLE 198
              + G +I+ +C+ G    A +++  +  R   P +V YN+I+  LCKH    +AY L  
Sbjct: 1032 -VSYGTLINGVCKIGDTRAAIKLLRKIDGRLTKPDVVMYNTIIDALCKHQLVSKAYGLFF 1090

Query: 199  EGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIK 258
            E    G      TY  L+ G C    L++A  +L  M+ K      R  NI + ALC  K
Sbjct: 1091 EMNVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNKMVLKTINPNVRTYNILVDALC--K 1148

Query: 259  NPTELLNVLVFMLQTQ----CQPDVITLNTVINGFCKMGRIEEALKVLNDMVA 307
               +LL+  + ML       C+ + +T   +I+   +    ++  K+L++M+A
Sbjct: 1149 EGKDLLDESLSMLSKMEDNGCKANAVTFEIIISALFEKDENDKVEKLLHEMIA 1201



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 92/189 (48%), Gaps = 1/189 (0%)

Query: 309  KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE 368
            K   PD  T   +I    ++G+I    ++L +++ +RGY P  +T+  ++ GL    +V 
Sbjct: 955  KGIQPDLFTLNILINCFCHMGQITFNFSILAKIL-KRGYHPDTITFTTLINGLCLKGQVN 1013

Query: 369  EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI 428
            +A    + +L  G   +  +Y  +I+G+C+      A +    I       D  +Y  +I
Sbjct: 1014 KALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKIDGRLTKPDVVMYNTII 1073

Query: 429  KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLN 488
              LC+   + +A    +E+   G++ ++V YN +I G C +   +EA  +L +M    +N
Sbjct: 1074 DALCKHQLVSKAYGLFFEMNVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNKMVLKTIN 1133

Query: 489  PDAVTWRIL 497
            P+  T+ IL
Sbjct: 1134 PNVRTYNIL 1142



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/237 (21%), Positives = 114/237 (48%), Gaps = 7/237 (2%)

Query: 4    LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
             C + ++     +   +  RG+ P+ +++TTLI+G C  G+++ A    D++   G   N
Sbjct: 971  FCHMGQITFNFSILAKILKRGYHPDTITFTTLINGLCLKGQVNKALHFHDKLLAQGFQLN 1030

Query: 64   SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             ++Y  L+ GV +  D   A  L+ K+  R+ + + +  N      ++D+LC+   V++ 
Sbjct: 1031 QVSYGTLINGVCKIGDTRAAIKLLRKIDGRLTKPDVVMYN-----TIIDALCKHQLVSKA 1085

Query: 124  FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            + +  +M       +      +I   C  G+   A  ++  M  + + P++ +YN +V  
Sbjct: 1086 YGLFFEMNVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNKMVLKTINPNVRTYNILVDA 1145

Query: 184  LCKHGGCM--RAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
            LCK G  +   +  +L +    G   +  T+++++  L  + + +K  K+L  M+++
Sbjct: 1146 LCKEGKDLLDESLSMLSKMEDNGCKANAVTFEIIISALFEKDENDKVEKLLHEMIAR 1202



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 59/121 (48%), Gaps = 1/121 (0%)

Query: 381  GVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEA 440
            G+  D  T  I+I+  C   Q+         I+      D   +  +I GLC  G++++A
Sbjct: 956  GIQPDLFTLNILINCFCHMGQITFNFSILAKILKRGYHPDTITFTTLINGLCLKGQVNKA 1015

Query: 441  VHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWR-ILDK 499
            +HF  +L+  G   N V Y  +I+G CK+   R A ++LR++      PD V +  I+D 
Sbjct: 1016 LHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKIDGRLTKPDVVMYNTIIDA 1075

Query: 500  L 500
            L
Sbjct: 1076 L 1076



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 70/131 (53%), Gaps = 5/131 (3%)

Query: 1    MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
            +D LC    V +A+ LFF+M  +G   +VV+Y TLI+G+C  G++  A  + ++M    +
Sbjct: 1073 IDALCKHQLVSKAYGLFFEMNVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNKMVLKTI 1132

Query: 61   LPNSLTYSVLVRGVLRT-RDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGY 119
             PN  TY++LV  + +  +D+   ++ M     +M E+     N   F  ++ +L  +  
Sbjct: 1133 NPNVRTYNILVDALCKEGKDLLDESLSML---SKM-EDNGCKANAVTFEIIISALFEKDE 1188

Query: 120  VNEVFRIAEDM 130
             ++V ++  +M
Sbjct: 1189 NDKVEKLLHEM 1199



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/209 (22%), Positives = 96/209 (45%), Gaps = 9/209 (4%)

Query: 1    MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
            ++ LC   +V +A      + ++G   N VSY TLI+G C+ G+   A K+  ++     
Sbjct: 1003 INGLCLKGQVNKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKIDGRLT 1062

Query: 61   LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             P+ + Y+ ++  + + + V +A  L F++       + +S +   +  L+   C  G +
Sbjct: 1063 KPDVVMYNTIIDALCKHQLVSKAYGLFFEM-----NVKGISADVVTYNTLIYGFCIVGKL 1117

Query: 121  NEVFRIAEDMPQGKSVNEEFACGH-MIDSLCRSGRN--HGASRVVYVMRKRGLTPSLVSY 177
             E   +   M   K++N      + ++D+LC+ G++    +  ++  M   G   + V++
Sbjct: 1118 KEAIGLLNKMVL-KTINPNVRTYNILVDALCKEGKDLLDESLSMLSKMEDNGCKANAVTF 1176

Query: 178  NSIVHGLCKHGGCMRAYQLLEEGIQFGYL 206
              I+  L +     +  +LL E I  G L
Sbjct: 1177 EIIISALFEKDENDKVEKLLHEMIARGLL 1205


>gi|326525465|dbj|BAJ88779.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 680

 Score =  204 bits (520), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 129/490 (26%), Positives = 244/490 (49%), Gaps = 16/490 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ +C  S  GEA  +  +M+++G  PN+V+Y  +I+G CR G +D A ++ + +   G 
Sbjct: 194 LEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAKEILNRLSSYGF 253

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ ++Y+ +++G+   R  +   VL  ++ ++         N   F  LV   CR G V
Sbjct: 254 QPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDK-----KCVPNEVTFDMLVRFFCRGGMV 308

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
               ++ + M Q         C  +I+++C+ GR   A   +  M   G  P  +SY ++
Sbjct: 309 ERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTV 368

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GLC+ G    A +LL E ++    P+E T+   +  LC +  +E+A K+++ M     
Sbjct: 369 LRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIELMPEYGC 428

Query: 241 VDRTRICNIYLRALCL---IKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
                  N  +   C+   + +  EL N L       C+P+ IT  T++ G C   R++ 
Sbjct: 429 SVGIVTYNALVHGFCVQGRVDSALELFNNL------PCEPNTITYTTLLTGLCHAERLDA 482

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           A ++L +M+  K C  +AVTF  ++      G ++EA+ L+ Q+M + G +P ++T+N +
Sbjct: 483 AAELLAEMIQ-KDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMM-EHGCTPNLITFNTL 540

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 417
           L G+ +    EEA E+ + ++  GV  D+ TY+ V+D L   ++ +EA +    +     
Sbjct: 541 LDGITKDCNSEEALELLHGLVSKGVSLDTITYSSVVDVLSREDRTEEAIQMLHAVQDMGM 600

Query: 418 IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQ 477
                +Y  ++  LC+  +  +A+ F   +V +G  PN   Y ++I+G     + +EA  
Sbjct: 601 RPKVGMYNKILFALCKRCETDQAIDFFAYMVSNGCMPNESTYIILIEGLAHEGLLKEARY 660

Query: 478 ILREMRKNGL 487
           +L E+   G+
Sbjct: 661 VLSELYAKGV 670



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 105/385 (27%), Positives = 189/385 (49%), Gaps = 40/385 (10%)

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
           +++++C+S     A  V+  MR +G TP++V+YN I++G+C+ G    A ++L     +G
Sbjct: 193 LLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAKEILNRLSSYG 252

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL 264
           + P   +Y  +++GLC     +  + +   M+ KK V      ++ +R  C        +
Sbjct: 253 FQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRFFCRGGMVERAI 312

Query: 265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKF-CAPDAVTFTTIIF 323
            VL  M Q  C P+    N VIN  CK GR+++A   LN+M  G + C PD +++TT++ 
Sbjct: 313 QVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNM--GMYGCNPDTISYTTVLR 370

Query: 324 GLLNVGRIQEALNL----------------------------------LYQVMPQRGYSP 349
           GL   GR + A  L                                  L ++MP+ G S 
Sbjct: 371 GLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIELMPEYGCSV 430

Query: 350 GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFW 409
           GIVTYNA++ G     RV+ A E+FN    +    ++ TY  ++ GLC + +LD A    
Sbjct: 431 GIVTYNALVHGFCVQGRVDSALELFN---NLPCEPNTITYTTLLTGLCHAERLDAAAELL 487

Query: 410 DDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKL 469
            +++      +   +  ++   C+ G + EA+  + ++++ G TPN++ +N ++DG  K 
Sbjct: 488 AEMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTPNLITFNTLLDGITKD 547

Query: 470 SMKREAYQILREMRKNGLNPDAVTW 494
               EA ++L  +   G++ D +T+
Sbjct: 548 CNSEEALELLHGLVSKGVSLDTITY 572



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 88/342 (25%), Positives = 158/342 (46%), Gaps = 5/342 (1%)

Query: 164 VMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGES 223
            M +RG  PS+V+Y  ++  +CK  G   A  +L+E    G  P+  TY V++ G+C E 
Sbjct: 177 TMLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREG 236

Query: 224 DLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLN 283
            ++ A+++L  + S             L+ LC  +   ++  +   M+  +C P+ +T +
Sbjct: 237 RVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFD 296

Query: 284 TVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMP 343
            ++  FC+ G +E A++VL  M +   C P+      +I  +   GR+ +A + L   M 
Sbjct: 297 MLVRFFCRGGMVERAIQVLQQM-SQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNN-MG 354

Query: 344 QRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLD 403
             G +P  ++Y  VLRGL R  R E AKE+   M+      +  T+   I  LC+   ++
Sbjct: 355 MYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIE 414

Query: 404 EAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463
           +A +  + +           Y A++ G C  G++  A+     L      PN + Y  ++
Sbjct: 415 QAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELFNNL---PCEPNTITYTTLL 471

Query: 464 DGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
            G C       A ++L EM +     +AVT+ +L      +G
Sbjct: 472 TGLCHAERLDAAAELLAEMIQKDCPLNAVTFNVLVSFFCQKG 513



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 108/453 (23%), Positives = 201/453 (44%), Gaps = 74/453 (16%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ +C   RV +A ++   + S G  P++VSYTT++ G C     D    +F EM     
Sbjct: 229 INGMCREGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKC 288

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLV-DSLCREGY 119
           +PN +T+ +LVR   R   VERA     ++ ++M +       N    N+V +++C++G 
Sbjct: 289 VPNEVTFDMLVRFFCRGGMVERA----IQVLQQMSQHG--CTPNTTLCNIVINAICKQGR 342

Query: 120 VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           V++ +    +M       +  +   ++  LCR+GR   A  ++  M ++   P+ V++N+
Sbjct: 343 VDDAYDFLNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNT 402

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFG-----------------------------YLPSEH 210
            +  LC+ G   +A +L+E   ++G                              LP E 
Sbjct: 403 FICILCQKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELFNNLPCEP 462

Query: 211 ---TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVL 267
              TY  L+ GLC    L+ A ++L  M+ K         N+ +   C      E + ++
Sbjct: 463 NTITYTTLLTGLCHAERLDAAAELLAEMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELV 522

Query: 268 VFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLN 327
             M++  C P++IT NT+++G  K    EEAL++L+ +V+ K  + D +T+++++  L  
Sbjct: 523 NQMMEHGCTPNLITFNTLLDGITKDCNSEEALELLHGLVS-KGVSLDTITYSSVVDVLSR 581

Query: 328 VGRIQEALNLLYQV----------------------------------MPQRGYSPGIVT 353
             R +EA+ +L+ V                                  M   G  P   T
Sbjct: 582 EDRTEEAIQMLHAVQDMGMRPKVGMYNKILFALCKRCETDQAIDFFAYMVSNGCMPNEST 641

Query: 354 YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
           Y  ++ GL     ++EA+ V + +   GV++ S
Sbjct: 642 YIILIEGLAHEGLLKEARYVLSELYAKGVLSKS 674


>gi|115487378|ref|NP_001066176.1| Os12g0152600 [Oryza sativa Japonica Group]
 gi|77553036|gb|ABA95832.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113648683|dbj|BAF29195.1| Os12g0152600 [Oryza sativa Japonica Group]
 gi|125535802|gb|EAY82290.1| hypothetical protein OsI_37500 [Oryza sativa Indica Group]
 gi|125578525|gb|EAZ19671.1| hypothetical protein OsJ_35247 [Oryza sativa Japonica Group]
          Length = 716

 Score =  204 bits (519), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 141/495 (28%), Positives = 241/495 (48%), Gaps = 12/495 (2%)

Query: 8   SRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEM--RHCGVLPNSL 65
           +R  +   ++ +M   G  P++V+Y TL+  + R G +D A K+  EM  R  G LP+ +
Sbjct: 210 ARWDDMRSVYAEMLQLGIEPSIVTYNTLLDSFFREGRVDQAAKLLREMEARPGGCLPSDV 269

Query: 66  TYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFR 125
           TY+V++ G+ R  ++E+A     +L +RM+  +  S     F  L+      G V +   
Sbjct: 270 TYNVVINGLARKGELEKAA----QLVDRMRMSKKASA--FTFNPLITGYFARGSVEKAGA 323

Query: 126 IAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYV-MRKRGLTPSLVSYNSIVHGL 184
           +  +M     V        +I  + RSG N  A+R+ +V MR  GL P L++YNS+++G 
Sbjct: 324 LQLEMENEGIVPTVVTYNTIIHGMFRSG-NVEAARMKFVEMRAMGLLPDLITYNSLINGY 382

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
           CK G    A  L  +  + G  PS  TY +L++G C   DLE+AR+  Q M+ +      
Sbjct: 383 CKAGNLKEALWLFGDLKRAGLAPSVLTYNILLDGYCRLGDLEEARRFKQEMVEQGCQPDV 442

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
               I +     ++N   +      ML    QPD    NT I+    +G   EA ++   
Sbjct: 443 STYTILMNGSRKVRNLAMVREFFDEMLSKGLQPDCFAYNTRISAELILGSTSEAFQLTEV 502

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
           M++ +  + D VT+   + GL   G +++A  +L+  M   G  P  +TY  ++      
Sbjct: 503 MIS-RGISSDTVTYNIFLDGLCKSGNLKDAY-VLWMKMVSDGLQPDCITYTCLIHAHCER 560

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY 424
            R+ EA+++F+ ML  G+   + TY + I   C    L  A  ++  ++      +   Y
Sbjct: 561 GRLREARDIFDGMLVSGLPPSAVTYTVFIHAYCRRGNLYSAYGWFQKMLEEGVRPNEVTY 620

Query: 425 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484
             +I  LCR G+ + A    +E+++ G++PN   Y ++IDG CK     EA ++  EM +
Sbjct: 621 NVLIHALCRMGRTNLAYQHFHEMLERGLSPNKYTYTLLIDGNCKEGNWEEAIRLYSEMHQ 680

Query: 485 NGLNPDAVTWRILDK 499
           +G++PD  T   L K
Sbjct: 681 HGIHPDHCTHNALFK 695



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 107/360 (29%), Positives = 176/360 (48%), Gaps = 28/360 (7%)

Query: 160 RVVYV-MRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE--GIQFGYLPSEHTYKVLV 216
           R VY  M + G+ PS+V+YN+++    + G   +A +LL E      G LPS+ TY V++
Sbjct: 216 RSVYAEMLQLGIEPSIVTYNTLLDSFFREGRVDQAAKLLREMEARPGGCLPSDVTYNVVI 275

Query: 217 EGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNP----------TELLNV 266
            GL  + +LEKA ++         VDR R+     +A     NP           E    
Sbjct: 276 NGLARKGELEKAAQL---------VDRMRMSK---KASAFTFNPLITGYFARGSVEKAGA 323

Query: 267 LVFMLQTQ-CQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 325
           L   ++ +   P V+T NT+I+G  + G +E A     +M A     PD +T+ ++I G 
Sbjct: 324 LQLEMENEGIVPTVVTYNTIIHGMFRSGNVEAARMKFVEMRAMGLL-PDLITYNSLINGY 382

Query: 326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 385
              G ++EAL  L+  + + G +P ++TYN +L G  RL  +EEA+     M+  G   D
Sbjct: 383 CKAGNLKEAL-WLFGDLKRAGLAPSVLTYNILLDGYCRLGDLEEARRFKQEMVEQGCQPD 441

Query: 386 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY 445
            +TY I+++G  +   L   + F+D+++      D + Y   I      G   EA     
Sbjct: 442 VSTYTILMNGSRKVRNLAMVREFFDEMLSKGLQPDCFAYNTRISAELILGSTSEAFQLTE 501

Query: 446 ELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
            ++  G++ + V YN+ +DG CK    ++AY +  +M  +GL PD +T+  L   H  RG
Sbjct: 502 VMISRGISSDTVTYNIFLDGLCKSGNLKDAYVLWMKMVSDGLQPDCITYTCLIHAHCERG 561



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 100/377 (26%), Positives = 180/377 (47%), Gaps = 10/377 (2%)

Query: 6   GLSRVG--EAHKL-FFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           G+ R G  EA ++ F +M++ G +P++++Y +LI+GYC+ G +  A  +F +++  G+ P
Sbjct: 346 GMFRSGNVEAARMKFVEMRAMGLLPDLITYNSLINGYCKAGNLKEALWLFGDLKRAGLAP 405

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           + LTY++L+ G  R  D+E A     + +++   E+    + + +  L++   +   +  
Sbjct: 406 SVLTYNILLDGYCRLGDLEEA-----RRFKQEMVEQGCQPDVSTYTILMNGSRKVRNLAM 460

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
           V    ++M       + FA    I +    G    A ++  VM  RG++   V+YN  + 
Sbjct: 461 VREFFDEMLSKGLQPDCFAYNTRISAELILGSTSEAFQLTEVMISRGISSDTVTYNIFLD 520

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           GLCK G    AY L  + +  G  P   TY  L+   C    L +AR +   ML      
Sbjct: 521 GLCKSGNLKDAYVLWMKMVSDGLQPDCITYTCLIHAHCERGRLREARDIFDGMLVSGLPP 580

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
                 +++ A C   N          ML+   +P+ +T N +I+  C+MGR   A +  
Sbjct: 581 SAVTYTVFIHAYCRRGNLYSAYGWFQKMLEEGVRPNEVTYNVLIHALCRMGRTNLAYQHF 640

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
           ++M+  +  +P+  T+T +I G    G  +EA+ L Y  M Q G  P   T+NA+ +G  
Sbjct: 641 HEMLE-RGLSPNKYTYTLLIDGNCKEGNWEEAIRL-YSEMHQHGIHPDHCTHNALFKGFD 698

Query: 363 RLRRVEEAKEVFNCMLG 379
             +     + + N +LG
Sbjct: 699 EGQSKHAIQYMENVVLG 715



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 105/405 (25%), Positives = 185/405 (45%), Gaps = 10/405 (2%)

Query: 10  VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSV 69
           V +A  L  +M++ G VP VV+Y T+IHG  R+G ++ A   F EMR  G+LP+ +TY+ 
Sbjct: 318 VEKAGALQLEMENEGIVPTVVTYNTIIHGMFRSGNVEAARMKFVEMRAMGLLPDLITYNS 377

Query: 70  LVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAED 129
           L+ G  +  +++ A  L   L     +   L+ +   +  L+D  CR G + E  R  ++
Sbjct: 378 LINGYCKAGNLKEALWLFGDL-----KRAGLAPSVLTYNILLDGYCRLGDLEEARRFKQE 432

Query: 130 MPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVY-VMRKRGLTPSLVSYNSIVHGLCKHG 188
           M + +    + +   ++ +  R  RN    R  +  M  +GL P   +YN+ +      G
Sbjct: 433 MVE-QGCQPDVSTYTILMNGSRKVRNLAMVREFFDEMLSKGLQPDCFAYNTRISAELILG 491

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
               A+QL E  I  G      TY + ++GLC   +L+ A  +   M+S           
Sbjct: 492 STSEAFQLTEVMISRGISSDTVTYNIFLDGLCKSGNLKDAYVLWMKMVSDGLQPDCITYT 551

Query: 249 IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 308
             + A C      E  ++   ML +   P  +T    I+ +C+ G +  A      M+  
Sbjct: 552 CLIHAHCERGRLREARDIFDGMLVSGLPPSAVTYTVFIHAYCRRGNLYSAYGWFQKMLE- 610

Query: 309 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE 368
           +   P+ VT+  +I  L  +GR   A    ++++ +RG SP   TY  ++ G  +    E
Sbjct: 611 EGVRPNEVTYNVLIHALCRMGRTNLAYQHFHEML-ERGLSPNKYTYTLLIDGNCKEGNWE 669

Query: 369 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413
           EA  +++ M   G+  D  T+  +  G  E  Q   A ++ +++V
Sbjct: 670 EAIRLYSEMHQHGIHPDHCTHNALFKGFDE-GQSKHAIQYMENVV 713



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 93/198 (46%), Gaps = 6/198 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    + +A+ L+  M S G  P+ ++YT LIH +C  G +  A  +FD M   G+
Sbjct: 519 LDGLCKSGNLKDAYVLWMKMVSDGLQPDCITYTCLIHAHCERGRLREARDIFDGMLVSGL 578

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+++TY+V +    R     R N+     W +   EE +  N   +  L+ +LCR G  
Sbjct: 579 PPSAVTYTVFIHAYCR-----RGNLYSAYGWFQKMLEEGVRPNEVTYNVLIHALCRMGRT 633

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           N  ++   +M +      ++    +ID  C+ G    A R+   M + G+ P   ++N++
Sbjct: 634 NLAYQHFHEMLERGLSPNKYTYTLLIDGNCKEGNWEEAIRLYSEMHQHGIHPDHCTHNAL 693

Query: 181 VHGLCKHGGCMRAYQLLE 198
             G    G    A Q +E
Sbjct: 694 FKGF-DEGQSKHAIQYME 710


>gi|357115764|ref|XP_003559656.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 867

 Score =  204 bits (519), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 153/562 (27%), Positives = 262/562 (46%), Gaps = 77/562 (13%)

Query: 1   MDQLCGLSRVGEAHKLFFDM-KSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCG 59
           +  LCG SR  EA  +   M K  G  P+VVSYT +IHG    GE+  A  +F+EM   G
Sbjct: 243 IKSLCGGSRSQEALDMLLRMTKGDGCSPDVVSYTMVIHGLFMEGEISKACNLFNEMVQKG 302

Query: 60  VLPNSLTYSVLVRGVLRTRDVERANVLMFKLWE---------------------RMKE-- 96
           V+PN +TY+ +V  + + R +++A +++ ++++                     R KE  
Sbjct: 303 VVPNVVTYNSIVHALCKARAMDKAELVLRQMFDNSIQPDEVTYTAMIHGYSCLGRWKEAA 362

Query: 97  -------EEDLSVNNAAFANLVDSLCRE------------------------------GY 119
                   E L  +   F +L+DSLC+                               GY
Sbjct: 363 KMFKEMTREGLIPDIVTFNSLMDSLCKHKRSKEAAEIFHSIATKGHKPDIISYSILLHGY 422

Query: 120 VNE-----VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSL 174
             E     +  +   M     V +      +I++  + G    A  +   MR +G++P++
Sbjct: 423 ATEGRFVDMNNLFHSMTDNGIVADSHCFNILINAHAKRGMMDEALLIFTEMRGQGVSPNV 482

Query: 175 VSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQF 234
           V+Y +++  LC+ G    A + L + I  G  P+   Y  L++G C   DL KA++++  
Sbjct: 483 VTYATVIAALCRMGRLADAMEKLSQMISIGLKPNTVVYHSLIQGFCTHGDLIKAKELVSE 542

Query: 235 MLSKKDVDRTRIC--NIYLRALC---LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGF 289
           M+ +  + R  I   +  + +LC    + N  ++ N+++ +     +PD+ T N++I+G+
Sbjct: 543 MMDQ-GIPRPNITFFSSIIHSLCNEGRVMNAQDVFNLVIHIGD---RPDIFTFNSLIDGY 598

Query: 290 CKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSP 349
           C +G++++A  VL+ MV+     PD VT++T+I G    GRI + L L  +++ +R   P
Sbjct: 599 CLVGKMDKAFGVLDAMVSAG-TEPDVVTYSTLINGYFKSGRIDDGLILFREMLCKR-VKP 656

Query: 350 GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFW 409
             VTY+ VL GLFR  R   AK++F+ M+  G     +TY I++ GLC +N  DEA   +
Sbjct: 657 TTVTYSLVLDGLFRAGRTSAAKKMFHEMIESGTAMSISTYTIILQGLCRNNCTDEAITLF 716

Query: 410 DDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKL 469
             +   +   +  +   MI  L +  +  EA      +  SG+ PN   Y V+I    K 
Sbjct: 717 HKLGAMNLKFEIAILNTMIHALYKVKRREEAHDLFASVSASGLVPNASTYGVMIINLLKE 776

Query: 470 SMKREAYQILREMRKNGLNPDA 491
               EA  +   M K G  P +
Sbjct: 777 GSVEEADIMFSSMEKTGCAPSS 798



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 118/459 (25%), Positives = 217/459 (47%), Gaps = 10/459 (2%)

Query: 7   LSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLT 66
           L R  EA K+F +M   G +P++V++ +L+   C+      A ++F  +   G  P+ ++
Sbjct: 355 LGRWKEAAKMFKEMTREGLIPDIVTFNSLMDSLCKHKRSKEAAEIFHSIATKGHKPDIIS 414

Query: 67  YSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRI 126
           YS+L+ G       E   V M  L+  M +   +  ++  F  L+++  + G ++E   I
Sbjct: 415 YSILLHGYA----TEGRFVDMNNLFHSMTDN-GIVADSHCFNILINAHAKRGMMDEALLI 469

Query: 127 AEDMPQGKSVNEEFAC-GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLC 185
             +M +G+ V+        +I +LCR GR   A   +  M   GL P+ V Y+S++ G C
Sbjct: 470 FTEM-RGQGVSPNVVTYATVIAALCRMGRLADAMEKLSQMISIGLKPNTVVYHSLIQGFC 528

Query: 186 KHGGCMRAYQLLEEGIQFGYL-PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
            HG  ++A +L+ E +  G   P+   +  ++  LC E  +  A+ V   ++   D    
Sbjct: 529 THGDLIKAKELVSEMMDQGIPRPNITFFSSIIHSLCNEGRVMNAQDVFNLVIHIGDRPDI 588

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
              N  +   CL+    +   VL  M+    +PDV+T +T+ING+ K GRI++ L +  +
Sbjct: 589 FTFNSLIDGYCLVGKMDKAFGVLDAMVSAGTEPDVVTYSTLINGYFKSGRIDDGLILFRE 648

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
           M+  K   P  VT++ ++ GL   GR   A  + ++ M + G +  I TY  +L+GL R 
Sbjct: 649 MLC-KRVKPTTVTYSLVLDGLFRAGRTSAAKKMFHE-MIESGTAMSISTYTIILQGLCRN 706

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY 424
              +EA  +F+ +  + +  +      +I  L +  + +EA   +  +     + +   Y
Sbjct: 707 NCTDEAITLFHKLGAMNLKFEIAILNTMIHALYKVKRREEAHDLFASVSASGLVPNASTY 766

Query: 425 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463
             MI  L + G + EA      +  +G  P+    N +I
Sbjct: 767 GVMIINLLKEGSVEEADIMFSSMEKTGCAPSSRLLNDII 805



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 83/297 (27%), Positives = 140/297 (47%), Gaps = 2/297 (0%)

Query: 210 HTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVF 269
           HTY +L++  C     +        +L         + N +L+ LC  K   E L++L+ 
Sbjct: 166 HTYGILMDCCCRARRPDLGPAFFARLLRAGLRTDGIVTNTFLKCLCYAKRTDEALSMLLH 225

Query: 270 -MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNV 328
            M +  C PD  + NTVI   C   R +EAL +L  M  G  C+PD V++T +I GL   
Sbjct: 226 RMSELGCVPDAFSYNTVIKSLCGGSRSQEALDMLLRMTKGDGCSPDVVSYTMVIHGLFME 285

Query: 329 GRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTT 388
           G I +A NL +  M Q+G  P +VTYN+++  L + R +++A+ V   M    +  D  T
Sbjct: 286 GEISKACNL-FNEMVQKGVVPNVVTYNSIVHALCKARAMDKAELVLRQMFDNSIQPDEVT 344

Query: 389 YAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELV 448
           Y  +I G     +  EA + + ++     I D   + +++  LC+  +  EA    + + 
Sbjct: 345 YTAMIHGYSCLGRWKEAAKMFKEMTREGLIPDIVTFNSLMDSLCKHKRSKEAAEIFHSIA 404

Query: 449 DSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
             G  P+I+ Y++++ G        +   +   M  NG+  D+  + IL   H  RG
Sbjct: 405 TKGHKPDIISYSILLHGYATEGRFVDMNNLFHSMTDNGIVADSHCFNILINAHAKRG 461



 Score = 43.5 bits (101), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 43/84 (51%)

Query: 7   LSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLT 66
           + R  EAH LF  + + G VPN  +Y  +I    + G ++ A  +F  M   G  P+S  
Sbjct: 741 VKRREEAHDLFASVSASGLVPNASTYGVMIINLLKEGSVEEADIMFSSMEKTGCAPSSRL 800

Query: 67  YSVLVRGVLRTRDVERANVLMFKL 90
            + ++R +L+  ++ +A   M K+
Sbjct: 801 LNDIIRMLLQKGEIVKAGYYMSKV 824


>gi|242033891|ref|XP_002464340.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
 gi|241918194|gb|EER91338.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
          Length = 758

 Score =  204 bits (519), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 133/491 (27%), Positives = 244/491 (49%), Gaps = 9/491 (1%)

Query: 8   SRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTY 67
           S++     ++ +M  RG  P+VV+  TLI   CR  ++  A  + +EM   GV P+  T+
Sbjct: 176 SKLKLLESVYNEMTGRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHGVAPDETTF 235

Query: 68  SVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF-RI 126
           + L++G +    +E A  +  K+ E       ++VN      L++  C+ G V +    I
Sbjct: 236 TTLMQGFIEEGSIEAALRVKAKMMEAGCSPTGVTVNV-----LINGYCKMGRVEDALGYI 290

Query: 127 AEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK 186
            +++  G    ++      +  LC++G    A +V+ +M + G  P + +YN++++ L K
Sbjct: 291 QQEIADGFE-PDQVTYNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSK 349

Query: 187 HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRI 246
           +G    A  ++ + +  G LP   T+  L+  L  ++ LE+A  + + +  K        
Sbjct: 350 NGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSPDVYT 409

Query: 247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV 306
            NI + ALC + +P   + +   M  + C PD +T N +I+  C MG++  AL +LN+M 
Sbjct: 410 FNILINALCKVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEME 469

Query: 307 AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 366
           +   C    VT+ TII  L    RI+EA  +  Q M  +G S   VT+N ++ GL + +R
Sbjct: 470 SNG-CPRSTVTYNTIIDALCKKMRIEEAEEVFDQ-MDAQGISRSAVTFNTLIDGLCKAKR 527

Query: 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAA 426
           +++A E+   M+  G+  ++ TY  ++   C+   + +A    + +       D   Y  
Sbjct: 528 IDDATELIEQMVKEGLQPNNITYNSILTHYCKQGNIKKAADILETMTANGFEIDVVTYGT 587

Query: 427 MIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG 486
           +I GLC++G+   A+  L  +   G+ P    YN VI    + +  R+A  + REM + G
Sbjct: 588 LINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALNLFREMTEVG 647

Query: 487 LNPDAVTWRIL 497
             PDA+T++I+
Sbjct: 648 EPPDALTYKIV 658



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 125/487 (25%), Positives = 220/487 (45%), Gaps = 14/487 (2%)

Query: 16  LFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYK-VFDEMRH--CGVLPNSLTYSVLVR 72
           L  +M+  GH    V   + +  Y R    D A   V +++ +   GV  +++ ++ L+ 
Sbjct: 111 LVREMRREGHQVRAVVVRSFVESYARLRRFDDAVDLVLNQLDNDTFGVQADTVVFNHLLN 170

Query: 73  GVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQ 132
            ++    ++    +  ++  R  + + +++N      L+ +LCR   V     + E+M  
Sbjct: 171 VLVEGSKLKLLESVYNEMTGRGIQPDVVTLNT-----LIKALCRAHQVRTAVLMLEEMSS 225

Query: 133 GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMR 192
                +E     ++      G    A RV   M + G +P+ V+ N +++G CK G    
Sbjct: 226 HGVAPDETTFTTLMQGFIEEGSIEAALRVKAKMMEAGCSPTGVTVNVLINGYCKMGRVED 285

Query: 193 AYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLR 252
           A   +++ I  G+ P + TY   V GLC    +  A KV+  ML +         N  + 
Sbjct: 286 ALGYIQQEIADGFEPDQVTYNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVIN 345

Query: 253 ALCLIKNPT--ELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKF 310
             CL KN    E   ++  M+   C PD  T NT+I       R+EEAL +  ++   K 
Sbjct: 346 --CLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALSSQNRLEEALDLARELTV-KG 402

Query: 311 CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEA 370
            +PD  TF  +I  L  VG     + L ++ M   G +P  VTYN ++  L  + ++  A
Sbjct: 403 LSPDVYTFNILINALCKVGDPHLGIRL-FEEMKSSGCTPDEVTYNILIDHLCSMGKLGNA 461

Query: 371 KEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKG 430
            ++ N M   G    + TY  +ID LC+  +++EA+  +D +           +  +I G
Sbjct: 462 LDLLNEMESNGCPRSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLIDG 521

Query: 431 LCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD 490
           LC++ +I +A   + ++V  G+ PN + YN ++   CK    ++A  IL  M  NG   D
Sbjct: 522 LCKAKRIDDATELIEQMVKEGLQPNNITYNSILTHYCKQGNIKKAADILETMTANGFEID 581

Query: 491 AVTWRIL 497
            VT+  L
Sbjct: 582 VVTYGTL 588



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/378 (24%), Positives = 176/378 (46%), Gaps = 10/378 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           L   +R+ EA  L  ++  +G  P+V ++  LI+  C+ G+  +  ++F+EM+  G  P+
Sbjct: 382 LSSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCTPD 441

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY++L+  +     +  A  L+ ++     E      +   +  ++D+LC++  + E 
Sbjct: 442 EVTYNILIDHLCSMGKLGNALDLLNEM-----ESNGCPRSTVTYNTIIDALCKKMRIEEA 496

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             + + M              +ID LC++ R   A+ ++  M K GL P+ ++YNSI+  
Sbjct: 497 EEVFDQMDAQGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPNNITYNSILTH 556

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK G   +A  +LE     G+     TY  L+ GLC     + A K+L+ M  K     
Sbjct: 557 YCKQGNIKKAADILETMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPT 616

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK-MGRIEEALKVL 302
            +  N  +++L    N  + LN+   M +    PD +T   V    C+  G I+EA   L
Sbjct: 617 PKAYNPVIQSLFRRNNLRDALNLFREMTEVGEPPDALTYKIVFRSLCRGGGPIKEAFDFL 676

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
            +MV   F  P+  +F  +  GLLN+G     ++ +  ++ +  +     +    +RG  
Sbjct: 677 VEMVNKGFM-PEFSSFRMLAEGLLNLGMDDYLISAIELIIEKAKFRESDAS---AIRGYL 732

Query: 363 RLRRVEEAKEVFNCMLGI 380
           ++R+  +A   F  +L I
Sbjct: 733 KIRKYYDALATFGRLLEI 750



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 125/239 (52%), Gaps = 6/239 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC + ++G A  L  +M+S G   + V+Y T+I   C+   ++ A +VFD+M   G+
Sbjct: 449 IDHLCSMGKLGNALDLLNEMESNGCPRSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQGI 508

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             +++T++ L+ G+ + + ++ A     +L E+M  +E L  NN  + +++   C++G +
Sbjct: 509 SRSAVTFNTLIDGLCKAKRIDDAT----ELIEQMV-KEGLQPNNITYNSILTHYCKQGNI 563

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +   I E M       +    G +I+ LC++GR   A +++  MR +G+ P+  +YN +
Sbjct: 564 KKAADILETMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPV 623

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLC-GESDLEKARKVLQFMLSK 238
           +  L +      A  L  E  + G  P   TYK++   LC G   +++A   L  M++K
Sbjct: 624 IQSLFRRNNLRDALNLFREMTEVGEPPDALTYKIVFRSLCRGGGPIKEAFDFLVEMVNK 682



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/245 (22%), Positives = 101/245 (41%), Gaps = 41/245 (16%)

Query: 296 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN 355
           E AL++LN  +A +  AP +  +  I+  L   G   + +  L + M + G+    V   
Sbjct: 70  EAALRMLNSALAREDFAPSSAVYEEIVQKLGTAGAF-DLMEGLVREMRREGHQVRAVVVR 128

Query: 356 AVLRGLFRLRRVEEA--------------------------------------KEVFNCM 377
           + +    RLRR ++A                                      + V+N M
Sbjct: 129 SFVESYARLRRFDDAVDLVLNQLDNDTFGVQADTVVFNHLLNVLVEGSKLKLLESVYNEM 188

Query: 378 LGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKI 437
            G G+  D  T   +I  LC ++Q+  A    +++       D   +  +++G    G I
Sbjct: 189 TGRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHGVAPDETTFTTLMQGFIEEGSI 248

Query: 438 HEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
             A+    +++++G +P  V  NV+I+G CK+    +A   +++   +G  PD VT+   
Sbjct: 249 EAALRVKAKMMEAGCSPTGVTVNVLINGYCKMGRVEDALGYIQQEIADGFEPDQVTYNTF 308

Query: 498 DKLHG 502
             +HG
Sbjct: 309 --VHG 311


>gi|115475796|ref|NP_001061494.1| Os08g0300700 [Oryza sativa Japonica Group]
 gi|34015356|gb|AAQ56545.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|34015369|gb|AAQ56557.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|35215067|dbj|BAC92425.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113623463|dbj|BAF23408.1| Os08g0300700 [Oryza sativa Japonica Group]
 gi|215678779|dbj|BAG95216.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|258644436|dbj|BAI39696.1| putative fertility restorer [Oryza sativa Indica Group]
          Length = 735

 Score =  204 bits (519), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 146/499 (29%), Positives = 250/499 (50%), Gaps = 40/499 (8%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R  EA  L  +  S G  PN+V Y  LI GYC  GEM+ A KVF+ M      PN
Sbjct: 187 LCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPN 246

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             TY+ L+ G+ ++  VERA V    L+ RM  E  L  N   +  L+   C EG++   
Sbjct: 247 VRTYTELIHGLCKSGKVERAMV----LFSRMV-EAGLEPNVVTYTALIQGQCNEGHLQCA 301

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           FR+   M     V  ++    +ID+LC+  +   A   +  + K+G+  + V Y S++ G
Sbjct: 302 FRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDG 361

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK----K 239
           LCK G    A +L+++ I  G++P  H+Y  L++GLC +  L +A  +L+ M+ K     
Sbjct: 362 LCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQAS 421

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
            V  T I +  +R +   + P ++ +    M+ T   PD++T    +  +C+ GR+E+A 
Sbjct: 422 PVTYTIIIDELVREVG-SEGPKKIFDK---MIATGINPDIVTYTVFVRSYCEEGRMEDAE 477

Query: 300 KVLNDMV-AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
            ++  MV  G F  P+ VT+ T+I G  N+G + +A +  ++VM  +G+ P   +Y  +L
Sbjct: 478 SMIVQMVDRGVF--PNLVTYNTLIRGYANLGLVSQAFS-TFEVMVGKGWKPNEDSYTVLL 534

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
           R + +    + + +++        +AD     ++++ + E  QL  A             
Sbjct: 535 RLVVKKSSSDNSVDIWK-------IADMKDLQVLLEDITE-RQLPLAAD----------- 575

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI 478
               +Y+  I+ LCR  ++ EA HF   + ++ +TP+   Y  +ID  C+L +  +A  +
Sbjct: 576 ----IYSCFIRCLCRVDRLEEAKHFFMGMQNANLTPSEDVYTSIIDCCCRLKILTDALTL 631

Query: 479 LREMRKNGLNPDAVTWRIL 497
           L  M K+G  P   ++RI+
Sbjct: 632 LDSMTKSGYLPHLESYRII 650



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 127/500 (25%), Positives = 220/500 (44%), Gaps = 42/500 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C    +  A +    +   G  P+  +YT+ + GYCR G +  A +VF  M   G 
Sbjct: 79  INAYCLAGDIPAAKQHLTSLLHAGLAPDSYAYTSFVLGYCRAGMLTHACRVFVLMPLRGC 138

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           L  + TY+ L+ G+L    V  A  +   +       +  + +   +A +V  LC  G  
Sbjct: 139 LRTAFTYTALLHGLLGAGMVREAMAVFVGM-----RADSCAPDTHVYATMVHGLCEAGRT 193

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E   + E+               +ID  C +G    A +V   M     +P++ +Y  +
Sbjct: 194 EEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTEL 253

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +HGLCK G   RA  L    ++ G  P+  TY  L++G C E  L+ A ++L  M +   
Sbjct: 254 IHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMET--- 310

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                   N LV        P+  T + +I+  CK  ++EEA  
Sbjct: 311 ------------------------NGLV--------PNDWTFSVLIDALCKREKVEEAQL 338

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
            L  +V  K    + V +T++I GL   G+I +A + L Q M   G+ P   +Y++++ G
Sbjct: 339 FLGSLVK-KGVKVNEVVYTSLIDGLCKTGKI-DAADELMQKMISEGFVPDAHSYSSLIDG 396

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L R +++ +A  +   M+  G+ A   TY I+ID L      +  K+ +D ++      D
Sbjct: 397 LCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMIATGINPD 456

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              Y   ++  C  G++ +A   + ++VD GV PN+V YN +I G   L +  +A+    
Sbjct: 457 IVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYANLGLVSQAFSTFE 516

Query: 481 EMRKNGLNPDAVTWRILDKL 500
            M   G  P+  ++ +L +L
Sbjct: 517 VMVGKGWKPNEDSYTVLLRL 536



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 132/530 (24%), Positives = 219/530 (41%), Gaps = 115/530 (21%)

Query: 14  HKLFFDMKS---RGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVL 70
           H++F DM+S   R    N+ +YTTLI+ YC  G++  A +    + H G+ P+S  Y+  
Sbjct: 54  HRMFPDMESLASRMPARNLRTYTTLINAYCLAGDIPAAKQHLTSLLHAGLAPDSYAYTSF 113

Query: 71  VRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDM 130
           V G                                         CR G +    R+   M
Sbjct: 114 VLGY----------------------------------------CRAGMLTHACRVFVLM 133

Query: 131 PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGC 190
           P    +   F    ++  L  +G    A  V   MR     P    Y ++VHGLC+ G  
Sbjct: 134 PLRGCLRTAFTYTALLHGLLGAGMVREAMAVFVGMRADSCAPDTHVYATMVHGLCEAGRT 193

Query: 191 MRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIY 250
             A  LLEE +  G+ P+   Y  L++G C   ++E A KV + M    D +R       
Sbjct: 194 EEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGM----DGNR------- 242

Query: 251 LRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKF 310
                                   C P+V T   +I+G CK G++E A+ + + MV    
Sbjct: 243 ------------------------CSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGL 278

Query: 311 CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEA 370
             P+ VT+T +I G  N G +Q A  LL+ +M   G  P   T++ ++  L +  +VEEA
Sbjct: 279 -EPNVVTYTALIQGQCNEGHLQCAFRLLH-LMETNGLVPNDWTFSVLIDALCKREKVEEA 336

Query: 371 KEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKG 430
           +     ++  GV  +   Y  +IDGLC++ ++D A      ++    + D + Y+++I G
Sbjct: 337 QLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDG 396

Query: 431 LCRSGKIHEAVHFLYELVD-----------------------------------SGVTPN 455
           LCR  K+ +A   L ++++                                   +G+ P+
Sbjct: 397 LCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMIATGINPD 456

Query: 456 IVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
           IV Y V +   C+     +A  ++ +M   G+ P+ VT+  L + + N G
Sbjct: 457 IVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYANLG 506



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 117/481 (24%), Positives = 206/481 (42%), Gaps = 70/481 (14%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   +V EA      +  +G   N V YT+LI G C+TG++D A ++  +M   G 
Sbjct: 324 IDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGF 383

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P++ +YS L+ G+ R + + +A +++  + E+      +  +   +  ++D L RE   
Sbjct: 384 VPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEK-----GIQASPVTYTIIIDELVREVGS 438

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHM-IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
               +I + M     +N +     + + S C  GR   A  ++  M  RG+ P+LV+YN+
Sbjct: 439 EGPKKIFDKM-IATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNT 497

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++ G    G   +A+   E  +  G+ P+E +Y VL+            R V++   S  
Sbjct: 498 LIRGYANLGLVSQAFSTFEVMVGKGWKPNEDSYTVLL------------RLVVKKSSSDN 545

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
            VD  +I ++            +L  +L  + + Q        +  I   C++ R+EEA 
Sbjct: 546 SVDIWKIADM-----------KDLQVLLEDITERQLPLAADIYSCFIRCLCRVDRLEEAK 594

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
                M       P    +T+II     +  + +AL LL   M + GY P + +Y  ++ 
Sbjct: 595 HFFMGMQNANL-TPSEDVYTSIIDCCCRLKILTDALTLL-DSMTKSGYLPHLESYRIIIS 652

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
            L        AKEVF  +L                 L ESN        +D+IVW     
Sbjct: 653 SLCEGGNFRTAKEVFGDLL-----------------LKESN--------YDEIVW----- 682

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
                  +I GL + G + E    L  + + G  P+    N +I G  ++++  E  +I 
Sbjct: 683 -----KILIYGLLQKGSVAEFSSLLSVMKEHGYQPSNT-INAMITG--EITVTNEVQEIA 734

Query: 480 R 480
           R
Sbjct: 735 R 735



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 107/226 (47%), Gaps = 2/226 (0%)

Query: 281 TLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQ 340
           T  T+IN +C  G I  A + L  ++     APD+  +T+ + G    G +  A  + + 
Sbjct: 74  TYTTLINAYCLAGDIPAAKQHLTSLLHAGL-APDSYAYTSFVLGYCRAGMLTHACRV-FV 131

Query: 341 VMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN 400
           +MP RG      TY A+L GL     V EA  VF  M       D+  YA ++ GLCE+ 
Sbjct: 132 LMPLRGCLRTAFTYTALLHGLLGAGMVREAMAVFVGMRADSCAPDTHVYATMVHGLCEAG 191

Query: 401 QLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYN 460
           + +EA+   ++ +      +  VY A+I G C +G++  A+     +  +  +PN+  Y 
Sbjct: 192 RTEEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYT 251

Query: 461 VVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
            +I G CK      A  +   M + GL P+ VT+  L +   N G+
Sbjct: 252 ELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGH 297


>gi|60390261|sp|Q76C99.1|RF1_ORYSI RecName: Full=Protein Rf1, mitochondrial; AltName: Full=Fertility
           restorer; AltName: Full=Protein PPR; AltName:
           Full=Restorer for CMS; Flags: Precursor
 gi|33859440|dbj|BAC77665.2| PPR protein [Oryza sativa Indica Group]
 gi|33859442|dbj|BAC77666.2| Rf1 [Oryza sativa Indica Group]
 gi|41152689|dbj|BAD08214.1| fertility restorer [Oryza sativa Indica Group]
 gi|46091159|dbj|BAD13708.1| PPR protein [Oryza sativa Indica Group]
 gi|47550657|dbj|BAD20283.1| restorer for CMS [Oryza sativa Indica Group]
          Length = 791

 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 133/488 (27%), Positives = 243/488 (49%), Gaps = 7/488 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC    + +A ++   M   G +P+ ++Y +++HGYC +G+   A     +MR  GV P+
Sbjct: 241 LCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPD 300

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TYS+L+  + +      A     K+++ M +   L      +  L+     +G + E+
Sbjct: 301 VVTYSLLMDYLCKNGRCMEAR----KIFDSMTKR-GLKPEITTYGTLLQGYATKGALVEM 355

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             + + M +     + +    +I +  + G+   A  V   MR++GL P+ V+Y +++  
Sbjct: 356 HGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGI 415

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LCK G    A    E+ I  G  P    Y  L+ GLC  +  E+A +++  ML +     
Sbjct: 416 LCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLN 475

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
           T   N  + + C      E   +   M++   +P+VIT NT+ING+C  G+++EA+K+L+
Sbjct: 476 TIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLS 535

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            MV+     P+ VT++T+I G   + R+++AL +L++ M   G SP I+TYN +L+GLF+
Sbjct: 536 GMVSVGL-KPNTVTYSTLINGYCKISRMEDAL-VLFKEMESSGVSPDIITYNIILQGLFQ 593

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
            RR   AKE++  +   G   + +TY I++ GLC++   D+A + + ++       +   
Sbjct: 594 TRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEART 653

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           +  MI  L + G+  EA         +G+ PN   Y ++ +      +  E  Q+   M 
Sbjct: 654 FNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSME 713

Query: 484 KNGLNPDA 491
            NG   D+
Sbjct: 714 DNGCTVDS 721



 Score =  177 bits (450), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 123/502 (24%), Positives = 237/502 (47%), Gaps = 47/502 (9%)

Query: 4   LCGLSRVGEAHKLFF---DMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           LC  +R  EA +L     D +  G  P+VVSYTT+I+G+ + G+ D AY  + EM   G+
Sbjct: 168 LCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGI 227

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           LP+ +TY+ ++  + + + +++A  ++  + +     + ++ N+     ++   C  G  
Sbjct: 228 LPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNS-----ILHGYCSSGQP 282

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E     + M       +      ++D LC++GR   A ++   M KRGL P + +Y ++
Sbjct: 283 KEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTL 342

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G    G  +  + LL+  ++ G  P  + + +L+   C  +   K  KV Q ML    
Sbjct: 343 LQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILI---CAYA---KQGKVDQAML---- 392

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                    V   M Q    P+ +T   VI   CK GR+E+A+ 
Sbjct: 393 -------------------------VFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAML 427

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
               M+  +  +P  + + ++I GL    + + A  L+ + M  RG     + +N+++  
Sbjct: 428 YFEQMI-DEGLSPGNIVYNSLIHGLCTCNKWERAEELILE-MLDRGICLNTIFFNSIIDS 485

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
             +  RV E++++F  M+ IGV  +  TY  +I+G C + ++DEA +    +V      +
Sbjct: 486 HCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPN 545

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              Y+ +I G C+  ++ +A+    E+  SGV+P+I+ YN+++ G  +      A ++  
Sbjct: 546 TVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYV 605

Query: 481 EMRKNGLNPDAVTWRILDKLHG 502
            + ++G   +  T+ I+  LHG
Sbjct: 606 RITESGTQIELSTYNII--LHG 625



 Score =  161 bits (407), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 123/493 (24%), Positives = 224/493 (45%), Gaps = 15/493 (3%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCG---VLPNSLTYS 68
           +A  +F ++  RG   ++      +    R      A   ++ M   G   V P+  TY 
Sbjct: 33  DARHVFDELLRRGRGASIYGLNRALADVARDSPA-AAVSRYNRMARAGADEVTPDLCTYG 91

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIA- 127
           +L+    R     R ++    L   +K+     V+  AF  L+  LC +   ++   I  
Sbjct: 92  ILIGCCCRA---GRLDLGFAALGNVIKK--GFRVDAIAFTPLLKGLCADKRTSDAMDIVL 146

Query: 128 EDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVM---RKRGLTPSLVSYNSIVHGL 184
             M +   +   F+   ++  LC   R+  A  ++++M   R  G  P +VSY ++++G 
Sbjct: 147 RRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGF 206

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
            K G   +AY    E +  G LP   TY  ++  LC    ++KA +VL  M+    +   
Sbjct: 207 FKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDC 266

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
              N  L   C    P E +  L  M     +PDV+T + +++  CK GR  EA K+ + 
Sbjct: 267 MTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDS 326

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
           M   +   P+  T+ T++ G    G + E   LL  +M + G  P    ++ ++    + 
Sbjct: 327 MTK-RGLKPEITTYGTLLQGYATKGALVEMHGLL-DLMVRNGIHPDHYVFSILICAYAKQ 384

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY 424
            +V++A  VF+ M   G+  ++ TY  VI  LC+S ++++A  +++ ++       N VY
Sbjct: 385 GKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVY 444

Query: 425 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484
            ++I GLC   K   A   + E++D G+  N + +N +ID  CK     E+ ++   M +
Sbjct: 445 NSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVR 504

Query: 485 NGLNPDAVTWRIL 497
            G+ P+ +T+  L
Sbjct: 505 IGVKPNVITYNTL 517



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 116/470 (24%), Positives = 216/470 (45%), Gaps = 56/470 (11%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           MD LC   R  EA K+F  M  RG  P + +Y TL+ GY   G +   + + D M   G+
Sbjct: 308 MDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGI 367

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+   +S+L+    +   V++A ++  K+      ++ L+ N   +  ++  LC+ G V
Sbjct: 368 HPDHYVFSILICAYAKQGKVDQAMLVFSKM-----RQQGLNPNAVTYGAVIGILCKSGRV 422

Query: 121 NEVFRIAEDMPQGKSVNEEFACGH-----MIDSLCRSGRNHGASRVVYVMRKRGLTPSLV 175
            +     E M     ++E  + G+     +I  LC   +   A  ++  M  RG+  + +
Sbjct: 423 EDAMLYFEQM-----IDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTI 477

Query: 176 SYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM 235
            +NSI+   CK G  + + +L E  ++ G  P+  TY  L+ G C    +++A K+L  M
Sbjct: 478 FFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGM 537

Query: 236 LSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 295
           +S                                      +P+ +T +T+ING+CK+ R+
Sbjct: 538 VS-----------------------------------VGLKPNTVTYSTLINGYCKISRM 562

Query: 296 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN 355
           E+AL +  +M +    +PD +T+  I+ GL    R   A   LY  + + G    + TYN
Sbjct: 563 EDALVLFKEMESSGV-SPDIITYNIILQGLFQTRRTAAAKE-LYVRITESGTQIELSTYN 620

Query: 356 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP 415
            +L GL + +  ++A ++F  +  + +  ++ T+ I+ID L +  + DEAK  +  + + 
Sbjct: 621 IILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLF--VAFS 678

Query: 416 SN--IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463
           SN  + + + Y  M + +   G + E       + D+G T +    N ++
Sbjct: 679 SNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIV 728



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 105/433 (24%), Positives = 197/433 (45%), Gaps = 7/433 (1%)

Query: 77  TRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSV 136
            RD   A V  +    R   +E ++ +   +  L+   CR G ++  F    ++ +    
Sbjct: 61  ARDSPAAAVSRYNRMARAGADE-VTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFR 119

Query: 137 NEEFACGHMIDSLCRSGRNHGASRVVYV-MRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQ 195
            +  A   ++  LC   R   A  +V   M + G  P++ SYN ++ GLC       A +
Sbjct: 120 VDAIAFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALE 179

Query: 196 LLE---EGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLR 252
           LL    +    G  P   +Y  ++ G   E D +KA      ML +  +      N  + 
Sbjct: 180 LLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIA 239

Query: 253 ALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCA 312
           ALC  +   + + VL  M++    PD +T N++++G+C  G+ +EA+  L  M +     
Sbjct: 240 ALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGV-E 298

Query: 313 PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKE 372
           PD VT++ ++  L   GR  EA  + +  M +RG  P I TY  +L+G      + E   
Sbjct: 299 PDVVTYSLLMDYLCKNGRCMEARKI-FDSMTKRGLKPEITTYGTLLQGYATKGALVEMHG 357

Query: 373 VFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLC 432
           + + M+  G+  D   ++I+I    +  ++D+A   +  +       +   Y A+I  LC
Sbjct: 358 LLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILC 417

Query: 433 RSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAV 492
           +SG++ +A+ +  +++D G++P  + YN +I G C  +    A +++ EM   G+  + +
Sbjct: 418 KSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTI 477

Query: 493 TWRILDKLHGNRG 505
            +  +   H   G
Sbjct: 478 FFNSIIDSHCKEG 490


>gi|83744086|gb|ABC42329.1| PPR protein [Oryza sativa Indica Group]
          Length = 761

 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 132/481 (27%), Positives = 237/481 (49%), Gaps = 2/481 (0%)

Query: 11  GEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVL 70
           G+A+  + +M  R   P+VV+Y+++I   C+   MD A +V   M   GV+PN  TY+ +
Sbjct: 213 GKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTSMVKNGVMPNCRTYTSI 272

Query: 71  VRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDM 130
           + G   +   + A   + K+     E + L  + A +  L+     +G +  +  + + M
Sbjct: 273 MHGYCSSGQPKEAIGFLKKVRSDGVEPDGLEPDIATYCTLLQGYATKGALVGMHALLDLM 332

Query: 131 PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGC 190
            +     + +    +I +  + G+   A  V   MR++GL P  V+Y +++  LCK G  
Sbjct: 333 VRNGIHPDHYVYNILICAYAKQGKVDEAMLVFSKMRQQGLNPDAVTYGAVIGILCKSGRV 392

Query: 191 MRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIY 250
             A    E+ I  G  P    Y  L+ GLC  +  E+A +++  ML +     T   N  
Sbjct: 393 EDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSI 452

Query: 251 LRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKF 310
           + + C      E   +   M++   +PD+IT +T+I+G+C  G+++EA+K+L+ MV+   
Sbjct: 453 IDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGL 512

Query: 311 CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEA 370
             P+ VT+ T+I G   + R+ +AL +L++ M   G SP I+TYN +L+GLF+ RR   A
Sbjct: 513 -KPNTVTYRTLINGYCKISRMGDAL-VLFKEMESSGVSPDIITYNIILQGLFQTRRTAAA 570

Query: 371 KEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKG 430
           KE++  +   G   + +TY I++ GLC++   D+A R + ++       +   +  MI  
Sbjct: 571 KELYVRITESGTQIELSTYNIILHGLCKNKLTDDALRMFQNLCLMDLKLEARTFNIMIDA 630

Query: 431 LCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD 490
           L + G+  EA         +G+ PN   Y ++ +      +  E  Q+   M  NG   D
Sbjct: 631 LLKVGRNGEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVD 690

Query: 491 A 491
           +
Sbjct: 691 S 691



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 128/483 (26%), Positives = 234/483 (48%), Gaps = 20/483 (4%)

Query: 26  VPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANV 85
            P V +Y  LI   CR   +D+ +     +   G    ++T++ L++G+   +   R + 
Sbjct: 84  TPTVHTYAILIGCCCRADRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADK---RTSD 140

Query: 86  LMFKLWERMKEEEDLSVNNAAFAN--LVDSLCREGYVNEVFRIAEDMPQGK---SVNEEF 140
            M  +  RM E   LS     F+   L+  LC E    E   +   M  G+   S  +  
Sbjct: 141 AMDIVLRRMTE---LSCMPDVFSCTILLKGLCDENRSQEALELPHMMADGRGGGSAPDVV 197

Query: 141 ACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEG 200
           +   +I+   + G +  A    + M  R ++P +V+Y+SI+  LCK     +A ++L   
Sbjct: 198 SYTTVINGFFKEGDSGKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTSM 257

Query: 201 IQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK------DVDRTRICNIYLRAL 254
           ++ G +P+  TY  ++ G C     ++A   L+ + S        + D    C + L+  
Sbjct: 258 VKNGVMPNCRTYTSIMHGYCSSGQPKEAIGFLKKVRSDGVEPDGLEPDIATYCTL-LQGY 316

Query: 255 CLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPD 314
                   +  +L  M++    PD    N +I  + K G+++EA+ V + M       PD
Sbjct: 317 ATKGALVGMHALLDLMVRNGIHPDHYVYNILICAYAKQGKVDEAMLVFSKMRQQGL-NPD 375

Query: 315 AVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVF 374
           AVT+  +I  L   GR+++A+ L ++ M   G SPG + YN+++ GL    + E A+E+ 
Sbjct: 376 AVTYGAVIGILCKSGRVEDAM-LYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELI 434

Query: 375 NCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRS 434
             ML  G+  ++  +  +ID  C+  ++ E+++ +D +V      D   Y+ +I G C +
Sbjct: 435 LEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLA 494

Query: 435 GKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
           GK+ EA+  L  +V  G+ PN V Y  +I+G CK+S   +A  + +EM  +G++PD +T+
Sbjct: 495 GKMDEAMKLLSGMVSVGLKPNTVTYRTLINGYCKISRMGDALVLFKEMESSGVSPDIITY 554

Query: 495 RIL 497
            I+
Sbjct: 555 NII 557



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 152/332 (45%), Gaps = 42/332 (12%)

Query: 170 LTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKAR 229
           +TP++ +Y  ++   C+       +  L   ++ G+     T+  L++GLC +     A 
Sbjct: 83  VTPTVHTYAILIGCCCRADRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAM 142

Query: 230 KVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGF 289
            +                                  VL  M +  C PDV +   ++ G 
Sbjct: 143 DI----------------------------------VLRRMTELSCMPDVFSCTILLKGL 168

Query: 290 CKMGRIEEALKVLNDMVAGK--FCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGY 347
           C   R +EAL++ + M  G+    APD V++TT+I G    G   +A +  ++++ +R  
Sbjct: 169 CDENRSQEALELPHMMADGRGGGSAPDVVSYTTVINGFFKEGDSGKAYSTYHEMLDRR-I 227

Query: 348 SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA-- 405
           SP +VTY++++  L + + +++A EV   M+  GV+ +  TY  ++ G C S Q  EA  
Sbjct: 228 SPDVVTYSSIIAALCKGQAMDKAMEVLTSMVKNGVMPNCRTYTSIMHGYCSSGQPKEAIG 287

Query: 406 --KRFWDDIVWPSNIH-DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVV 462
             K+   D V P  +  D   Y  +++G    G +      L  +V +G+ P+   YN++
Sbjct: 288 FLKKVRSDGVEPDGLEPDIATYCTLLQGYATKGALVGMHALLDLMVRNGIHPDHYVYNIL 347

Query: 463 IDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
           I    K     EA  +  +MR+ GLNPDAVT+
Sbjct: 348 ICAYAKQGKVDEAMLVFSKMRQQGLNPDAVTY 379



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 101/438 (23%), Positives = 188/438 (42%), Gaps = 43/438 (9%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           +V EA  +F  M+ +G  P+ V+Y  +I   C++G ++ A   F++M   G+ P ++ Y+
Sbjct: 356 KVDEAMLVFSKMRQQGLNPDAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYN 415

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
            L+ G+      ERA  L+ ++ +R      + +N   F +++DS C+EG V E      
Sbjct: 416 SLIHGLCTCNKWERAEELILEMLDR-----GICLNTIFFNSIIDSHCKEGRVIE------ 464

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
                                        + ++  +M + G+ P +++Y++++ G C  G
Sbjct: 465 -----------------------------SEKLFDLMVRIGVKPDIITYSTLIDGYCLAG 495

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
               A +LL   +  G  P+  TY+ L+ G C  S +  A  + + M S          N
Sbjct: 496 KMDEAMKLLSGMVSVGLKPNTVTYRTLINGYCKISRMGDALVLFKEMESSGVSPDIITYN 555

Query: 249 IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 308
           I L+ L   +       + V + ++  Q ++ T N +++G CK    ++AL++  ++   
Sbjct: 556 IILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALRMFQNLCLM 615

Query: 309 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE 368
                +A TF  +I  LL VGR  EA + L+      G  P   TY  +   +     +E
Sbjct: 616 DL-KLEARTFNIMIDALLKVGRNGEAKD-LFVAFSSNGLVPNYWTYRLMAENIIGQGLLE 673

Query: 369 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI 428
           E  ++F  M   G   DS     ++  L +  ++  A  +   ++   +       A++ 
Sbjct: 674 ELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYL-SMIDEKHFSLEASTASLF 732

Query: 429 KGLCRSGKIHEAVHFLYE 446
             L   GK  E   FL E
Sbjct: 733 IDLLSGGKYQEYHRFLPE 750



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/199 (30%), Positives = 95/199 (47%), Gaps = 12/199 (6%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C   ++ EA KL   M S G  PN V+Y TLI+GYC+   M  A  +F EM   GV
Sbjct: 488 IDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYRTLINGYCKISRMGDALVLFKEMESSGV 547

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TY+++++G+ +TR    A  L  ++ E   + E LS  N     ++  LC+    
Sbjct: 548 SPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIE-LSTYNI----ILHGLCKNKLT 602

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           ++  R+ +++       E      MID+L + GRN  A  +       GL P+  +Y  +
Sbjct: 603 DDALRMFQNLCLMDLKLEARTFNIMIDALLKVGRNGEAKDLFVAFSSNGLVPNYWTYRLM 662

Query: 181 VHGLCKHGGCMRAYQLLEE 199
              +   G       LLEE
Sbjct: 663 AENIIGQG-------LLEE 674



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 109/241 (45%), Gaps = 10/241 (4%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C   RV E+ KLF  M   G  P++++Y+TLI GYC  G+MD A K+   M   G+
Sbjct: 453 IDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGL 512

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN++TY  L+ G  +   +  A VL FK  E      D+   N     L  +  R    
Sbjct: 513 KPNTVTYRTLINGYCKISRMGDALVL-FKEMESSGVSPDIITYNIILQGLFQTR-RTAAA 570

Query: 121 NEVF-RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
            E++ RI E   Q     E      ++  LC++     A R+   +    L     ++N 
Sbjct: 571 KELYVRITESGTQ----IELSTYNIILHGLCKNKLTDDALRMFQNLCLMDLKLEARTFNI 626

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++  L K G    A  L       G +P+  TY+++ E + G+  LE   ++ Q  LS +
Sbjct: 627 MIDALLKVGRNGEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLE---ELDQLFLSME 683

Query: 240 D 240
           D
Sbjct: 684 D 684



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 76/347 (21%), Positives = 144/347 (41%), Gaps = 21/347 (6%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC  ++   A +L  +M  RG   N + + ++I  +C+ G +  + K+FD M   GV P+
Sbjct: 421 LCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPD 480

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TYS L+ G      ++ A     KL   M     L  N   +  L++  C+   + + 
Sbjct: 481 IITYSTLIDGYCLAGKMDEA----MKLLSGMV-SVGLKPNTVTYRTLINGYCKISRMGDA 535

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             + ++M       +      ++  L ++ R   A  +   + + G    L +YN I+HG
Sbjct: 536 LVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHG 595

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD- 242
           LCK+     A ++ +            T+ ++++ L       +A+ +     S   V  
Sbjct: 596 LCKNKLTDDALRMFQNLCLMDLKLEARTFNIMIDALLKVGRNGEAKDLFVAFSSNGLVPN 655

Query: 243 ----RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
               R    NI  + L       EL  + + M    C  D   LN ++    + G I  A
Sbjct: 656 YWTYRLMAENIIGQGLL-----EELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRA 710

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQR 345
              L+ M+  K  + +A T  ++   LL+ G+ QE     ++ +P++
Sbjct: 711 GTYLS-MIDEKHFSLEAST-ASLFIDLLSGGKYQE----YHRFLPEK 751



 Score = 41.6 bits (96), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 63/143 (44%), Gaps = 10/143 (6%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D L  + R GEA  LF    S G VPN  +Y  +       G ++   ++F  M   G 
Sbjct: 628 IDALLKVGRNGEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGC 687

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             +S   + +VR +L+  ++ RA       +  M +E+  S+  A+ A+L   L   G  
Sbjct: 688 TVDSGMLNFIVRELLQRGEITRAGT-----YLSMIDEKHFSL-EASTASLFIDLLSGGKY 741

Query: 121 NEVFRIAEDMPQG-KSVNEEFAC 142
            E  R    +P+  KS  E  +C
Sbjct: 742 QEYHRF---LPEKYKSFIESLSC 761


>gi|357149641|ref|XP_003575182.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 557

 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 122/386 (31%), Positives = 189/386 (48%), Gaps = 10/386 (2%)

Query: 114 LCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPS 173
           L R G + E  R+ E M   +       C  +I  LC SGR   A RV+         P 
Sbjct: 69  LVRRGDLEEALRLVESMSGLEPSAAPGPCAALIKKLCASGRTAEARRVLAACE-----PD 123

Query: 174 LVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQ 233
           +++YN++V G C  G    A +L+ +       P  +TY  L+ GLCG      A  VL 
Sbjct: 124 VMAYNAMVAGYCVTGQLDAARRLVAD---MPMEPDSYTYNTLIRGLCGRGRTGNALVVLD 180

Query: 234 FMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMG 293
            ML +  V       I L A C      + + +L  M    C PD+IT N V+NG C+ G
Sbjct: 181 DMLRRGCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRAKGCAPDIITYNVVVNGICQEG 240

Query: 294 RIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVT 353
           R+++A++ L  +     C P+ V++  ++ GL    R ++A  L+ + M Q+GY P +VT
Sbjct: 241 RVDDAIEFLKSL-PSHGCEPNTVSYNIVLKGLCTAERWEDAEKLMAE-MSQKGYPPNVVT 298

Query: 354 YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413
           +N ++  L R   VE A EV + +   G   +S +Y  ++   C+  ++D A  F + +V
Sbjct: 299 FNMLISFLCRRGLVEPAMEVLDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMV 358

Query: 414 WPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKR 473
                 D   Y  ++  LCR G++  AV  L++L D G TP ++ YN VIDG  K    +
Sbjct: 359 SRGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTK 418

Query: 474 EAYQILREMRKNGLNPDAVTWRILDK 499
           EA ++L EM   GL PD +T+  +  
Sbjct: 419 EALELLNEMVTKGLQPDIITYSTISS 444



 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 123/488 (25%), Positives = 234/488 (47%), Gaps = 52/488 (10%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           + +LC   R  EA ++    +     P+V++Y  ++ GYC TG++D A ++  +M    +
Sbjct: 101 IKKLCASGRTAEARRVLAACE-----PDVMAYNAMVAGYCVTGQLDAARRLVADM---PM 152

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+S TY+ L+RG                                        LC  G  
Sbjct: 153 EPDSYTYNTLIRG----------------------------------------LCGRGRT 172

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                + +DM +   V +      ++++ C+      A +++  MR +G  P +++YN +
Sbjct: 173 GNALVVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRAKGCAPDIITYNVV 232

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           V+G+C+ G    A + L+     G  P+  +Y ++++GLC     E A K++  M  K  
Sbjct: 233 VNGICQEGRVDDAIEFLKSLPSHGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSQKGY 292

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                  N+ +  LC        + VL  + +  C P+ ++ N +++ FCK  +++ A+ 
Sbjct: 293 PPNVVTFNMLISFLCRRGLVEPAMEVLDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMA 352

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
            +  MV+ + C PD V++ T++  L   G +  A+ LL+Q +  +G +P +++YN V+ G
Sbjct: 353 FVELMVS-RGCYPDIVSYNTLLTALCRGGEVDAAVELLHQ-LKDKGCTPVLISYNTVIDG 410

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L +  + +EA E+ N M+  G+  D  TY+ +  GLC  ++++EA R +   V    I  
Sbjct: 411 LTKAGKTKEALELLNEMVTKGLQPDIITYSTISSGLCREDRIEEAIRAFCK-VQDMGIRP 469

Query: 421 NYV-YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           N V Y A++ GLC+  + H A+     ++ +G  PN   Y ++I+G     + +EA ++L
Sbjct: 470 NTVLYNAILLGLCKRRETHNAIDLFIYMISNGCMPNESTYTILIEGLTYEGLVKEARELL 529

Query: 480 REMRKNGL 487
            E+   G+
Sbjct: 530 GELCSRGV 537



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 120/435 (27%), Positives = 204/435 (46%), Gaps = 44/435 (10%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LCG  R G A  +  DM  RG VP+VV+YT L+   C+      A K+ DEMR  G  P+
Sbjct: 166 LCGRGRTGNALVVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRAKGCAPD 225

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY+V+V G+                                        C+EG V++ 
Sbjct: 226 IITYNVVVNGI----------------------------------------CQEGRVDDA 245

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
               + +P         +   ++  LC + R   A +++  M ++G  P++V++N ++  
Sbjct: 246 IEFLKSLPSHGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSQKGYPPNVVTFNMLISF 305

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LC+ G    A ++L++  ++G  P+  +Y  ++   C +  +++A   ++ M+S+     
Sbjct: 306 LCRRGLVEPAMEVLDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSRGCYPD 365

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               N  L ALC        + +L  +    C P +I+ NTVI+G  K G+ +EAL++LN
Sbjct: 366 IVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTKEALELLN 425

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           +MV  K   PD +T++TI  GL    RI+EA+    +V    G  P  V YNA+L GL +
Sbjct: 426 EMVT-KGLQPDIITYSTISSGLCREDRIEEAIRAFCKVQ-DMGIRPNTVLYNAILLGLCK 483

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
            R    A ++F  M+  G + + +TY I+I+GL     + EA+    ++     +    +
Sbjct: 484 RRETHNAIDLFIYMISNGCMPNESTYTILIEGLTYEGLVKEARELLGELCSRGVVSKGLI 543

Query: 424 YAAMIKGLCRSGKIH 438
             A I+ L   G  H
Sbjct: 544 NKAAIRLL--DGTTH 556



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 135/490 (27%), Positives = 228/490 (46%), Gaps = 25/490 (5%)

Query: 15  KLFFDMKSRGHVPNVVSYTTL----IHGYCRTGEMDVAYKVFDEMRHCGVLPNSLT--YS 68
           +L F        PN V +  +    + G  R G+++ A ++ + M   G+ P++     +
Sbjct: 41  RLNFAHAGVAASPNAVPHRAVSNDRLRGLVRRGDLEEALRLVESMS--GLEPSAAPGPCA 98

Query: 69  VLVRGVLRT-RDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIA 127
            L++ +  + R  E   VL          E D+   NA    +V   C  G ++   R+ 
Sbjct: 99  ALIKKLCASGRTAEARRVLA-------ACEPDVMAYNA----MVAGYCVTGQLDAARRLV 147

Query: 128 EDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKH 187
            DMP      + +    +I  LC  GR   A  V+  M +RG  P +V+Y  ++   CK 
Sbjct: 148 ADMPMEP---DSYTYNTLIRGLCGRGRTGNALVVLDDMLRRGCVPDVVTYTILLEATCKR 204

Query: 188 GGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC 247
            G  +A +LL+E    G  P   TY V+V G+C E  ++ A + L+ + S      T   
Sbjct: 205 SGYKQAMKLLDEMRAKGCAPDIITYNVVVNGICQEGRVDDAIEFLKSLPSHGCEPNTVSY 264

Query: 248 NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA 307
           NI L+ LC  +   +   ++  M Q    P+V+T N +I+  C+ G +E A++VL D + 
Sbjct: 265 NIVLKGLCTAERWEDAEKLMAEMSQKGYPPNVVTFNMLISFLCRRGLVEPAMEVL-DQIP 323

Query: 308 GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRV 367
              C P+++++  I+       ++  A+  + ++M  RG  P IV+YN +L  L R   V
Sbjct: 324 KYGCTPNSLSYNPILHAFCKQKKMDRAMAFV-ELMVSRGCYPDIVSYNTLLTALCRGGEV 382

Query: 368 EEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAM 427
           + A E+ + +   G      +Y  VIDGL ++ +  EA    +++V      D   Y+ +
Sbjct: 383 DAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTKEALELLNEMVTKGLQPDIITYSTI 442

Query: 428 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
             GLCR  +I EA+    ++ D G+ PN V YN ++ G CK      A  +   M  NG 
Sbjct: 443 SSGLCREDRIEEAIRAFCKVQDMGIRPNTVLYNAILLGLCKRRETHNAIDLFIYMISNGC 502

Query: 488 NPDAVTWRIL 497
            P+  T+ IL
Sbjct: 503 MPNESTYTIL 512



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 93/384 (24%), Positives = 173/384 (45%), Gaps = 42/384 (10%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C  S   +A KL  +M+++G  P++++Y  +++G C+ G +D A +    +   G 
Sbjct: 198 LEATCKRSGYKQAMKLLDEMRAKGCAPDIITYNVVVNGICQEGRVDDAIEFLKSLPSHGC 257

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN+++Y+++++G+      E A  LM ++ ++         N   F  L+  LCR G V
Sbjct: 258 EPNTVSYNIVLKGLCTAERWEDAEKLMAEMSQK-----GYPPNVVTFNMLISFLCRRGLV 312

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                + + +P+        +   ++ + C+  +   A   V +M  RG  P +VSYN++
Sbjct: 313 EPAMEVLDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSRGCYPDIVSYNTL 372

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +  LC+ G    A +LL +    G  P   +Y  +++GL      ++A ++L  M++K  
Sbjct: 373 LTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTKEALELLNEMVTKG- 431

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                              QPD+IT +T+ +G C+  RIEEA++
Sbjct: 432 ----------------------------------LQPDIITYSTISSGLCREDRIEEAIR 457

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
                V      P+ V +  I+ GL        A++ L+  M   G  P   TY  ++ G
Sbjct: 458 AFCK-VQDMGIRPNTVLYNAILLGLCKRRETHNAID-LFIYMISNGCMPNESTYTILIEG 515

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVA 384
           L     V+EA+E+   +   GVV+
Sbjct: 516 LTYEGLVKEARELLGELCSRGVVS 539



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/221 (29%), Positives = 105/221 (47%), Gaps = 10/221 (4%)

Query: 285 VINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ 344
           +I   C  GR  EA +VL        C PD + +  ++ G    G++  A  L+   MP 
Sbjct: 100 LIKKLCASGRTAEARRVL------AACEPDVMAYNAMVAGYCVTGQLDAARRLVAD-MPM 152

Query: 345 RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 404
               P   TYN ++RGL    R   A  V + ML  G V D  TY I+++  C+ +   +
Sbjct: 153 E---PDSYTYNTLIRGLCGRGRTGNALVVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQ 209

Query: 405 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
           A +  D++       D   Y  ++ G+C+ G++ +A+ FL  L   G  PN V YN+V+ 
Sbjct: 210 AMKLLDEMRAKGCAPDIITYNVVVNGICQEGRVDDAIEFLKSLPSHGCEPNTVSYNIVLK 269

Query: 465 GACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
           G C      +A +++ EM + G  P+ VT+ +L      RG
Sbjct: 270 GLCTAERWEDAEKLMAEMSQKGYPPNVVTFNMLISFLCRRG 310


>gi|297737746|emb|CBI26947.3| unnamed protein product [Vitis vinifera]
          Length = 1078

 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 129/497 (25%), Positives = 237/497 (47%), Gaps = 42/497 (8%)

Query: 10  VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSV 69
           + +A +++  M   G  P +V+Y TL+  YC+ G++     +  EM+  G  PN +TY+V
Sbjct: 215 MSKAVEVYRTMGEFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNV 274

Query: 70  LVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAED 129
           L+ G+ +  + E+A  L+ ++ +       L V+   +  L+     +G + E   + E+
Sbjct: 275 LINGLSKKGEFEQAKGLIGEMLK-----TGLKVSAYTYNPLIYGYFNKGMLAEALSLQEE 329

Query: 130 MPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG 189
           M    +          I  LC+ GR   A + +  M    L P +VSYN++++G C+ G 
Sbjct: 330 MVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGN 389

Query: 190 CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNI 249
            M+A+ L +E       P+  TY  L++GLC + +LE A+++                  
Sbjct: 390 LMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLK----------------- 432

Query: 250 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK 309
                             V M+     PD++T   ++NG CKMG +  A +  ++M+  +
Sbjct: 433 ------------------VEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLH-E 473

Query: 310 FCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEE 369
               D+  + T I G L +G    A +L  +++  +G+ P ++ YN V+ GL +L  +EE
Sbjct: 474 GLELDSYAYATRIVGELKLGDTSRAFSLQEEMLA-KGFPPDLIIYNVVVDGLCKLGNLEE 532

Query: 370 AKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIK 429
           A E+   M+  GV+ D  TY  +I    E+ +L + +  + +++          Y  +I 
Sbjct: 533 ASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLIH 592

Query: 430 GLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNP 489
           G    G++  A  +  E+ + G+ PN++ YN +I+G CK+    +AY    EM + G+ P
Sbjct: 593 GHAGKGRLERAFIYFSEMQEKGILPNVITYNSLINGLCKVRRMDQAYNFFAEMVEKGIFP 652

Query: 490 DAVTWRILDKLHGNRGN 506
           +  ++ IL   + N GN
Sbjct: 653 NKYSYTILINENCNMGN 669



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 106/361 (29%), Positives = 177/361 (49%), Gaps = 13/361 (3%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC L R+ +A +   DM +   +P+VVSY TLI+GYCR G +  A+ +FDE+R   + P 
Sbjct: 349 LCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPT 408

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY+ L+ G+ R  ++E A  L  ++       E ++ +   +  LV+  C+ G ++  
Sbjct: 409 IVTYNTLLDGLCRQGELEVAQQLKVEMI-----NEGIAPDIVTYTILVNGSCKMGSLSMA 463

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
               ++M       + +A    I    + G    A  +   M  +G  P L+ YN +V G
Sbjct: 464 QEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDG 523

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LCK G    A +LL++ +  G +P   TY  ++        L K R++   MLSK     
Sbjct: 524 LCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPS 583

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQ---PDVITLNTVINGFCKMGRIEEALK 300
                + +           L    ++  + Q +   P+VIT N++ING CK+ R+++A  
Sbjct: 584 VVTYTVLIHGHA---GKGRLERAFIYFSEMQEKGILPNVITYNSLINGLCKVRRMDQAYN 640

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
              +MV  K   P+  ++T +I    N+G  QEAL+ LY+ M  RG  P   T++A+L+ 
Sbjct: 641 FFAEMVE-KGIFPNKYSYTILINENCNMGNWQEALS-LYKQMLDRGVQPDSCTHSALLKQ 698

Query: 361 L 361
           L
Sbjct: 699 L 699



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/294 (29%), Positives = 138/294 (46%), Gaps = 14/294 (4%)

Query: 4   LCGLSRVGE---AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           L GL R GE   A +L  +M + G  P++V+YT L++G C+ G + +A + FDEM H G+
Sbjct: 416 LDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGL 475

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEE---EDLSVNNAAFANLVDSLCRE 117
             +S  Y+  + G L+  D  RA    F L E M  +    DL + N     +VD LC+ 
Sbjct: 476 ELDSYAYATRIVGELKLGDTSRA----FSLQEEMLAKGFPPDLIIYNV----VVDGLCKL 527

Query: 118 GYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
           G + E   + + M     + +      +I +   +GR      + Y M  +GLTPS+V+Y
Sbjct: 528 GNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTY 587

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
             ++HG    G   RA+    E  + G LP+  TY  L+ GLC    +++A      M+ 
Sbjct: 588 TVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLINGLCKVRRMDQAYNFFAEMVE 647

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK 291
           K          I +   C + N  E L++   ML    QPD  T + ++    K
Sbjct: 648 KGIFPNKYSYTILINENCNMGNWQEALSLYKQMLDRGVQPDSCTHSALLKQLGK 701



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 94/186 (50%), Gaps = 5/186 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC L  + EA +L   M S G +P+ V+YT++IH +   G +    ++F EM   G+
Sbjct: 521 VDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGL 580

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TY+VL+ G      +ERA    F  +  M+E+  L  N   + +L++ LC+   +
Sbjct: 581 TPSVVTYTVLIHGHAGKGRLERA----FIYFSEMQEKGILP-NVITYNSLINGLCKVRRM 635

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           ++ +    +M +      +++   +I+  C  G    A  +   M  RG+ P   +++++
Sbjct: 636 DQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEALSLYKQMLDRGVQPDSCTHSAL 695

Query: 181 VHGLCK 186
           +  L K
Sbjct: 696 LKQLGK 701



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 48/202 (23%), Positives = 81/202 (40%), Gaps = 36/202 (17%)

Query: 331 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYA 390
           +++ L++  +++  R  SP +   N +LR L     + +A EV+  M   G+     TY 
Sbjct: 180 VEQCLSVFDKMIKSR-LSPDVKNCNRILRILRDKDLMSKAVEVYRTMGEFGIKPTIVTYN 238

Query: 391 IVID-----------------------------------GLCESNQLDEAKRFWDDIVWP 415
            ++D                                   GL +  + ++AK    +++  
Sbjct: 239 TLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKT 298

Query: 416 SNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREA 475
                 Y Y  +I G    G + EA+    E+V  G +P +  YN  I G CKL    +A
Sbjct: 299 GLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDA 358

Query: 476 YQILREMRKNGLNPDAVTWRIL 497
            Q L +M  N L PD V++  L
Sbjct: 359 MQQLSDMLANNLLPDVVSYNTL 380


>gi|224092696|ref|XP_002309701.1| predicted protein [Populus trichocarpa]
 gi|222855677|gb|EEE93224.1| predicted protein [Populus trichocarpa]
          Length = 597

 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 130/490 (26%), Positives = 230/490 (46%), Gaps = 42/490 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M+  C L RV     +   +   G  P +V++TTLI+G C+ GE   A ++FD+M   G 
Sbjct: 135 MNCFCQLQRVDLGFSVLAKVIKLGLQPTIVTFTTLINGLCKVGEFAQAVELFDDMVAKGC 194

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+  TY+ ++ G+ +  +   A  L+ K+     EE     N   ++ L+DSLCR+  V
Sbjct: 195 QPDVYTYNTIINGLCKIGETAAAAGLLKKM-----EEAGCQPNMVTYSTLIDSLCRDRLV 249

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           NE   I   M       + F    +I  LC+  R   AS ++  M    + P +V++N +
Sbjct: 250 NEALDIFSYMKAKGISPDIFTYTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTFNVL 309

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           V   CK G    A  +L+   + G  P+  TY  L+ G    +D+ +ARK+   M++K  
Sbjct: 310 VDTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEARKLFHVMITKG- 368

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                             C+P++ + N +ING+CK  RI+EA++
Sbjct: 369 ----------------------------------CKPNIFSYNILINGYCKAKRIDEAMQ 394

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           + N+M+      P+ V++ T+I G   +G+++EA + L++ M   G  P + TY+ +L G
Sbjct: 395 LFNEMIHQGL-TPNNVSYNTLIHGFCQLGKLREAQD-LFRNMCTNGNLPDLFTYSILLDG 452

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
             +   + +A  +F  M    +  +   Y I++  +C+S    +A++ + ++        
Sbjct: 453 FCKQGYLGKAFRLFRAMQSTYLKPNLVMYTILVHAMCKSGNHKDARKLFSELFVQGLQPH 512

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
             +Y  +I GLC+ G + EA+     +   G  P+ + YNV+I G  +   +  A  ++ 
Sbjct: 513 VQLYTTIINGLCKEGLLDEALEAFRNMEADGCPPDEISYNVIIRGLLQHKDESRALLLVG 572

Query: 481 EMRKNGLNPD 490
           EMR  G   D
Sbjct: 573 EMRDRGFIAD 582



 Score =  188 bits (477), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 123/498 (24%), Positives = 236/498 (47%), Gaps = 10/498 (2%)

Query: 2   DQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEM-DVAYKVFDEMRHCGV 60
           D       + +A   F  M  R  +P ++ +  L+    + G+  DV   +  +M   G+
Sbjct: 65  DASSSFRNIDDALASFNHMLHRKPLPCIIQFAKLLSAIVKMGQYYDVVISLSKQMELVGL 124

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN  T S+ +    + + V+    ++ K+ +       L      F  L++ LC+ G  
Sbjct: 125 SPNIYTLSIFMNCFCQLQRVDLGFSVLAKVIKL-----GLQPTIVTFTTLINGLCKVGEF 179

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +   + +DM       + +    +I+ LC+ G    A+ ++  M + G  P++V+Y+++
Sbjct: 180 AQAVELFDDMVAKGCQPDVYTYNTIINGLCKIGETAAAAGLLKKMEEAGCQPNMVTYSTL 239

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +  LC+      A  +       G  P   TY  L++GLC  S  ++A  +L  M S   
Sbjct: 240 IDSLCRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQGLCKFSRWKEASALLNEMTSLNI 299

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           +      N+ +   C     +E L VL  M +   +P+V+T ++++ G+     + EA K
Sbjct: 300 MPDIVTFNVLVDTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEARK 359

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           + + M+  K C P+  ++  +I G     RI EA+ L  +++ Q G +P  V+YN ++ G
Sbjct: 360 LFHVMIT-KGCKPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQ-GLTPNNVSYNTLIHG 417

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
             +L ++ EA+++F  M   G + D  TY+I++DG C+   L +A R +  +   + +  
Sbjct: 418 FCQLGKLREAQDLFRNMCTNGNLPDLFTYSILLDGFCKQGYLGKAFRLFRAM-QSTYLKP 476

Query: 421 NYV-YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           N V Y  ++  +C+SG   +A     EL   G+ P++  Y  +I+G CK  +  EA +  
Sbjct: 477 NLVMYTILVHAMCKSGNHKDARKLFSELFVQGLQPHVQLYTTIINGLCKEGLLDEALEAF 536

Query: 480 REMRKNGLNPDAVTWRIL 497
           R M  +G  PD +++ ++
Sbjct: 537 RNMEADGCPPDEISYNVI 554



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 107/401 (26%), Positives = 204/401 (50%), Gaps = 3/401 (0%)

Query: 107 FANLVDSLCREG-YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVM 165
           FA L+ ++ + G Y + V  +++ M         +     ++  C+  R      V+  +
Sbjct: 95  FAKLLSAIVKMGQYYDVVISLSKQMELVGLSPNIYTLSIFMNCFCQLQRVDLGFSVLAKV 154

Query: 166 RKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDL 225
            K GL P++V++ ++++GLCK G   +A +L ++ +  G  P  +TY  ++ GLC   + 
Sbjct: 155 IKLGLQPTIVTFTTLINGLCKVGEFAQAVELFDDMVAKGCQPDVYTYNTIINGLCKIGET 214

Query: 226 EKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTV 285
             A  +L+ M            +  + +LC  +   E L++  +M      PD+ T  ++
Sbjct: 215 AAAAGLLKKMEEAGCQPNMVTYSTLIDSLCRDRLVNEALDIFSYMKAKGISPDIFTYTSL 274

Query: 286 INGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQR 345
           I G CK  R +EA  +LN+M +     PD VTF  ++      G++ EAL +L + M + 
Sbjct: 275 IQGLCKFSRWKEASALLNEMTSLNI-MPDIVTFNVLVDTFCKEGKVSEALGVL-KTMTEM 332

Query: 346 GYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA 405
           G  P +VTY++++ G      V EA+++F+ M+  G   +  +Y I+I+G C++ ++DEA
Sbjct: 333 GVEPNVVTYSSLMYGYSLWTDVVEARKLFHVMITKGCKPNIFSYNILINGYCKAKRIDEA 392

Query: 406 KRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDG 465
            + +++++      +N  Y  +I G C+ GK+ EA      +  +G  P++  Y++++DG
Sbjct: 393 MQLFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREAQDLFRNMCTNGNLPDLFTYSILLDG 452

Query: 466 ACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
            CK     +A+++ R M+   L P+ V + IL       GN
Sbjct: 453 FCKQGYLGKAFRLFRAMQSTYLKPNLVMYTILVHAMCKSGN 493


>gi|15221282|ref|NP_172694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122242333|sp|Q0WKV3.1|PPR36_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12300, mitochondrial; Flags: Precursor
 gi|110741411|dbj|BAF02254.1| hypothetical protein [Arabidopsis thaliana]
 gi|332190743|gb|AEE28864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 637

 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 132/487 (27%), Positives = 239/487 (49%), Gaps = 7/487 (1%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M+ +G   N+ + + +I+ +CR  ++ +A+    ++   G  PN++T+S L+ G+     
Sbjct: 114 MELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGR 173

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
           V  A  L+ ++ E   + + +++N      LV+ LC  G   E   + + M +       
Sbjct: 174 VSEALELVDRMVEMGHKPDLITINT-----LVNGLCLSGKEAEAMLLIDKMVEYGCQPNA 228

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
              G +++ +C+SG+   A  ++  M +R +    V Y+ I+ GLCKHG    A+ L  E
Sbjct: 229 VTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNE 288

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
               G   +  TY +L+ G C     +   K+L+ M+ +K        ++ + +      
Sbjct: 289 MEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGK 348

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
             E   +   M+     PD IT  ++I+GFCK   +++A +++ D++  K C P+  TF 
Sbjct: 349 LREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMV-DLMVSKGCDPNIRTFN 407

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
            +I G     RI + L L ++ M  RG     VTYN +++G   L ++  AKE+F  M+ 
Sbjct: 408 ILINGYCKANRIDDGLEL-FRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVS 466

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
             V  +  TY I++DGLC++ + ++A   ++ I       D  +Y  +I G+C + K+ +
Sbjct: 467 RKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDD 526

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
           A      L   GV P +  YN++I G CK     EA  + R+M ++G  PD  T+ IL +
Sbjct: 527 AWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIR 586

Query: 500 LHGNRGN 506
            H   G+
Sbjct: 587 AHLGDGD 593



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 132/505 (26%), Positives = 239/505 (47%), Gaps = 43/505 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   RV EA +L   M   GH P++++  TL++G C +G+   A  + D+M   G 
Sbjct: 165 INGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGC 224

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN++TY  ++  + ++     A  L+ K+     EE ++ ++   ++ ++D LC+ G +
Sbjct: 225 QPNAVTYGPVLNVMCKSGQTALAMELLRKM-----EERNIKLDAVKYSIIIDGLCKHGSL 279

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +  F +  +M              +I   C +GR    ++++  M KR + P++V+++ +
Sbjct: 280 DNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVL 339

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +    K G    A +L +E I  G  P   TY  L++G C E+ L+KA +++  M+SK  
Sbjct: 340 IDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSK-- 397

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                             C P++ T N +ING+CK  RI++ L+
Sbjct: 398 ---------------------------------GCDPNIRTFNILINGYCKANRIDDGLE 424

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +   M      A D VT+ T+I G   +G++  A   L+Q M  R   P IVTY  +L G
Sbjct: 425 LFRKMSLRGVVA-DTVTYNTLIQGFCELGKLNVAKE-LFQEMVSRKVPPNIVTYKILLDG 482

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L      E+A E+F  +    +  D   Y I+I G+C ++++D+A   +  +        
Sbjct: 483 LCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPG 542

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              Y  MI GLC+ G + EA     ++ + G  P+   YN++I          ++ +++ 
Sbjct: 543 VKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIE 602

Query: 481 EMRKNGLNPDAVTWR-ILDKLHGNR 504
           E+++ G + DA T + ++D L   R
Sbjct: 603 ELKRCGFSVDASTIKMVIDMLSDGR 627



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 107/220 (48%), Gaps = 5/220 (2%)

Query: 294 RIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVT 353
           + ++A+ +  DM+  +   P  + F+ +   +    +    L L  Q M  +G +  + T
Sbjct: 68  KADDAIDLFRDMIHSR-PLPTVIDFSRLFSAIAKTKQYDLVLALCKQ-MELKGIAHNLYT 125

Query: 354 YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413
            + ++    R R++  A      ++ +G   ++ T++ +I+GLC   ++ EA    D +V
Sbjct: 126 LSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMV 185

Query: 414 WPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKR 473
              +  D      ++ GLC SGK  EA+  + ++V+ G  PN V Y  V++  CK     
Sbjct: 186 EMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTA 245

Query: 474 EAYQILREMRKNGLNPDAVTWR-ILDKL--HGNRGNDFGL 510
            A ++LR+M +  +  DAV +  I+D L  HG+  N F L
Sbjct: 246 LAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNL 285


>gi|224100421|ref|XP_002311869.1| predicted protein [Populus trichocarpa]
 gi|222851689|gb|EEE89236.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 131/488 (26%), Positives = 234/488 (47%), Gaps = 44/488 (9%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           MK RG  P+VVSY+T+I+GYC  GE+    K+  EM+  G+ PN  TY+ ++  + ++  
Sbjct: 1   MKFRGDAPDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGK 60

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
           V+ A  ++ ++       + +  +   +  L+D  C+ G +   +++ ++M + + V + 
Sbjct: 61  VDDAERVLREMIN-----QGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDF 115

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
            A   +I  LCR G+   A +V   M  RG+ P  V+Y +++ G CK G   +A+ L  +
Sbjct: 116 IAYTAVICGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQ 175

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
            +Q G  P+  TY  L +GLC    ++ A ++L  M  K                     
Sbjct: 176 MVQSGLTPNVVTYTALADGLCKLGQVDTANELLHEMCGKG-------------------- 215

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM-VAGKFCAPDAVTF 318
                           Q ++ T N+++NG CK G I +A+K++ +M VAG +  PD +TF
Sbjct: 216 ---------------LQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGMY--PDTITF 258

Query: 319 TTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCML 378
           TT++      G + +A  LL + M  RG  P ++T+N ++ G      +E+ + +   ML
Sbjct: 259 TTLMDAYCKTGEMVKAHELLRE-MLDRGLQPTVITFNVLMNGFCMSGMLEDGERLLAWML 317

Query: 379 GIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIH 438
             G++ ++TTY  ++   C  N +      +  +     + D+  Y  +IKG C++  + 
Sbjct: 318 EKGIMPNTTTYNSLMKQYCIRNNMRCTTEIYKGMCARGVMPDSNTYNILIKGHCKARNMK 377

Query: 439 EAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILD 498
           EA     E+ + G       YN +I G  K     EA ++  EMR+ G+  DA  + +  
Sbjct: 378 EAWFLHKEMAEKGFNLTASSYNSIIKGFFKKKKISEARELFEEMRREGMAADAEIYNLFV 437

Query: 499 KLHGNRGN 506
            +    GN
Sbjct: 438 DISYGEGN 445



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 107/410 (26%), Positives = 213/410 (51%), Gaps = 7/410 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   +V +A ++  +M ++G VP+ V YTTLI G+C+ G +  AYK+FDEM    ++P+
Sbjct: 55  LCKSGKVDDAERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPD 114

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            + Y+ ++ G+ R   +  A+ +  K++ R  E ++++     +  L+D  C+ G + + 
Sbjct: 115 FIAYTAVICGLCRCGKMMEADKVFNKMFSRGVEPDEVT-----YTTLIDGYCKSGEMEKA 169

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           F +   M Q            + D LC+ G+   A+ +++ M  +GL  ++ +YNS+V+G
Sbjct: 170 FSLHNQMVQSGLTPNVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNG 229

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LCK G   +A +L+EE    G  P   T+  L++  C   ++ KA ++L+ ML +     
Sbjct: 230 LCKSGNIRQAVKLMEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPT 289

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               N+ +   C+     +   +L +ML+    P+  T N+++  +C    +    ++  
Sbjct: 290 VITFNVLMNGFCMSGMLEDGERLLAWMLEKGIMPNTTTYNSLMKQYCIRNNMRCTTEIYK 349

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            M A +   PD+ T+  +I G      ++EA   L++ M ++G++    +YN++++G F+
Sbjct: 350 GMCA-RGVMPDSNTYNILIKGHCKARNMKEAW-FLHKEMAEKGFNLTASSYNSIIKGFFK 407

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413
            +++ EA+E+F  M   G+ AD+  Y + +D       ++ A    D+ +
Sbjct: 408 KKKISEARELFEEMRREGMAADAEIYNLFVDISYGEGNMETALELCDEAI 457


>gi|302826367|ref|XP_002994672.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
 gi|300137182|gb|EFJ04264.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
          Length = 816

 Score =  203 bits (517), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 141/497 (28%), Positives = 233/497 (46%), Gaps = 53/497 (10%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R+ EA ++F  M  R   P+  SY  LI G  + G+++ A  +F ++ H GV P+
Sbjct: 298 LCQNDRIDEAVQMFEKMNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPS 357

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           ++ Y+ L+ G+      + A  L   +  R      ++ N      ++D+ C+ G + E 
Sbjct: 358 TVAYTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNV-----MIDASCKRGMLEEA 412

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             + + M +   V +      ++D LC+S R   A  +   M + G TP+  S+N+I+ G
Sbjct: 413 CDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILG 472

Query: 184 LCKHG----GCMR-----AYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQF 234
           LC+       C R     A++LL+     G++P   TY  L+ GLC  + ++ AR +L+ 
Sbjct: 473 LCQQSKIDQACQRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLED 532

Query: 235 MLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGR 294
           M+ +                                   QC+P V+T NT+I+G CK GR
Sbjct: 533 MVKR-----------------------------------QCKPTVVTQNTLIHGLCKAGR 557

Query: 295 IEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTY 354
           I+EA +VL+ MV+    +PD VT+ T++ G    G+ + A  LL   M  RG +P +VTY
Sbjct: 558 IKEAREVLDAMVSSGQ-SPDVVTYNTLVHGHCRAGQTERARELLSD-MVARGLAPNVVTY 615

Query: 355 NAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVW 414
            A++ GL +  R+ EA  VF  M   G   +  TY  +I G C + Q+D   + + ++V 
Sbjct: 616 TALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVC 675

Query: 415 PSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS--GVTPNIVCYNVVIDGACKLSMK 472
                D+ VY  +   LC+SG+   A+  L E  +S          Y   +DG  +    
Sbjct: 676 AGISPDHVVYGTLAAELCKSGRSARALEILREGRESLRSEAWGDEVYRFAVDGLLEAGKM 735

Query: 473 REAYQILREMRKNGLNP 489
             A   +R+M + G  P
Sbjct: 736 EMALGFVRDMVRGGQLP 752



 Score =  202 bits (513), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 134/500 (26%), Positives = 244/500 (48%), Gaps = 17/500 (3%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           R+ EA +++ + +     P +V+   L+ G+C  G++D A ++   M      P+ ++Y 
Sbjct: 195 RIDEALQVYRENRRE---PCLVTLNVLLEGFCSRGQVDKARELLRAMPDEECAPDEVSYC 251

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNA--AFANLVDSLCREGYVNEVFRI 126
            ++ G+ +   VE A V +F   E        S   +   +  ++  LC+   ++E  ++
Sbjct: 252 TVLDGLCKAGRVEEA-VRLFGDRELPSSSSSSSSPPSLRGYNIVILGLCQNDRIDEAVQM 310

Query: 127 AEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK 186
            E M +     + ++ G +ID L ++G+ + A  +   +   G+TPS V+Y S++HGLC 
Sbjct: 311 FEKMNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCM 370

Query: 187 HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRI 246
                 A +L  +  + G  PS  TY V+++  C    LE+A  +++ M+    V     
Sbjct: 371 ANSFDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVT 430

Query: 247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKM---------GRIEE 297
            N  +  LC      E L +   M +  C P+  + NT+I G C+          G+++E
Sbjct: 431 YNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQRGKLDE 490

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           A ++L  M       PD VT++T+I GL ++ R+ +A +LL + M +R   P +VT N +
Sbjct: 491 AFRLLKRMTDDGH-VPDVVTYSTLISGLCSIARVDDARHLL-EDMVKRQCKPTVVTQNTL 548

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 417
           + GL +  R++EA+EV + M+  G   D  TY  ++ G C + Q + A+    D+V    
Sbjct: 549 IHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGL 608

Query: 418 IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQ 477
             +   Y A++ GLC++ ++ EA     ++  SG  PN+  Y  +I G C         +
Sbjct: 609 APNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLK 668

Query: 478 ILREMRKNGLNPDAVTWRIL 497
           +  EM   G++PD V +  L
Sbjct: 669 LFGEMVCAGISPDHVVYGTL 688



 Score =  195 bits (495), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 140/509 (27%), Positives = 241/509 (47%), Gaps = 25/509 (4%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC  +RV +A +L   M  +       S  +++ G   +G +D A +V+ E R     P 
Sbjct: 155 LCKAARVDDALELARTMSEKRIPLAAGSLDSVLVGLMDSGRIDEALQVYRENRR---EPC 211

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +T +VL+ G      V++A  L+     R   +E+ + +  ++  ++D LC+ G V E 
Sbjct: 212 LVTLNVLLEGFCSRGQVDKARELL-----RAMPDEECAPDEVSYCTVLDGLCKAGRVEEA 266

Query: 124 FRIAEDMPQGKSVNEEFACGHM------IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
            R+  D     S +   +   +      I  LC++ R   A ++   M +R ++P   SY
Sbjct: 267 VRLFGDRELPSSSSSSSSPPSLRGYNIVILGLCQNDRIDEAVQMFEKMNERNVSPDSWSY 326

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
             ++ GL K G    A  L ++ +  G  PS   Y  L+ GLC  +  + AR++   M  
Sbjct: 327 GILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMNR 386

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
           +         N+ + A C      E  +++  M++    PDV+T NTV++G CK  R+EE
Sbjct: 387 RGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEE 446

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNV---------GRIQEALNLLYQVMPQRGYS 348
           AL + N+M     C P+  +  TII GL            G++ EA  LL + M   G+ 
Sbjct: 447 ALLLFNEM-ERLGCTPNRRSHNTIILGLCQQSKIDQACQRGKLDEAFRLLKR-MTDDGHV 504

Query: 349 PGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRF 408
           P +VTY+ ++ GL  + RV++A+ +   M+         T   +I GLC++ ++ EA+  
Sbjct: 505 PDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREV 564

Query: 409 WDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACK 468
            D +V      D   Y  ++ G CR+G+   A   L ++V  G+ PN+V Y  ++ G CK
Sbjct: 565 LDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCK 624

Query: 469 LSMKREAYQILREMRKNGLNPDAVTWRIL 497
            +   EA  +  +M+ +G  P+  T+  L
Sbjct: 625 ANRLPEACGVFAQMKSSGCAPNLFTYTAL 653



 Score =  185 bits (469), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 149/556 (26%), Positives = 246/556 (44%), Gaps = 72/556 (12%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D L          K+   M  RG  P+  ++TT++ G C+ G+MD A  V DEMR   +
Sbjct: 51  IDSLSKRQETEAVKKMVQVMVDRGCFPDSFTFTTILCGLCKAGKMDEAELVMDEMRSRMI 110

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P   T S L   +     +ERA    F+L E M        N++A+  +V +LC+   V
Sbjct: 111 PPYFATSSFLAHELCLRGSMERA----FQLLEIMP-----VANSSAYNIVVVALCKAARV 161

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           ++   +A  M + +      +   ++  L  SGR   A   + V R+    P LV+ N +
Sbjct: 162 DDALELARTMSEKRIPLAAGSLDSVLVGLMDSGRIDEA---LQVYRENRREPCLVTLNVL 218

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKA------RKVLQF 234
           + G C  G   +A +LL         P E +Y  +++GLC    +E+A      R++   
Sbjct: 219 LEGFCSRGQVDKARELLRAMPDEECAPDEVSYCTVLDGLCKAGRVEEAVRLFGDRELPSS 278

Query: 235 MLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGR 294
             S       R  NI +  LC      E + +   M +    PD  +   +I+G  K G+
Sbjct: 279 SSSSSSPPSLRGYNIVILGLCQNDRIDEAVQMFEKMNERNVSPDSWSYGILIDGLAKAGK 338

Query: 295 IEEALKVLNDMV--------------------AGKF--------------CAPDAVTFTT 320
           + +A  +   ++                    A  F              C P  VT+  
Sbjct: 339 LNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNV 398

Query: 321 IIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI 380
           +I      G ++EA +L+ + M + G+ P +VTYN V+ GL +  RVEEA  +FN M  +
Sbjct: 399 MIDASCKRGMLEEACDLIKK-MIEDGHVPDVVTYNTVMDGLCKSSRVEEALLLFNEMERL 457

Query: 381 GVVADSTTYAIVIDGLCESNQLDEA-------------KRFWDDIVWPSNIHDNYVYAAM 427
           G   +  ++  +I GLC+ +++D+A             KR  DD     ++ D   Y+ +
Sbjct: 458 GCTPNRRSHNTIILGLCQQSKIDQACQRGKLDEAFRLLKRMTDD----GHVPDVVTYSTL 513

Query: 428 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
           I GLC   ++ +A H L ++V     P +V  N +I G CK    +EA ++L  M  +G 
Sbjct: 514 ISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQ 573

Query: 488 NPDAVTWRILDKLHGN 503
           +PD VT+  L  +HG+
Sbjct: 574 SPDVVTYNTL--VHGH 587



 Score =  174 bits (441), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 128/491 (26%), Positives = 221/491 (45%), Gaps = 54/491 (10%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C + R  EA K+F  M+   H P    Y  LI    +  E +   K+   M   G  P+S
Sbjct: 21  CNVGRTFEAVKIFSLMEE-CHSPYPDVYNVLIDSLSKRQETEAVKKMVQVMVDRGCFPDS 79

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
            T++ ++ G+ +   ++ A ++M ++  RM     +    A  + L   LC  G +   F
Sbjct: 80  FTFTTILCGLCKAGKMDEAELVMDEMRSRM-----IPPYFATSSFLAHELCLRGSMERAF 134

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
           ++ E MP    V    A   ++ +LC++ R   A  +   M ++ +  +  S +S++ GL
Sbjct: 135 QLLEIMP----VANSSAYNIVVVALCKAARVDDALELARTMSEKRIPLAAGSLDSVLVGL 190

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
              G    A Q+  E  +    P   T  VL+EG C    ++KAR++L+ M         
Sbjct: 191 MDSGRIDEALQVYRENRRE---PCLVTLNVLLEGFCSRGQVDKARELLRAM--------- 238

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
                          P E           +C PD ++  TV++G CK GR+EEA+++  D
Sbjct: 239 ---------------PDE-----------ECAPDEVSYCTVLDGLCKAGRVEEAVRLFGD 272

Query: 305 MVAGKFCAPDAVT-----FTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
                  +  +       +  +I GL    RI EA+  +++ M +R  SP   +Y  ++ 
Sbjct: 273 RELPSSSSSSSSPPSLRGYNIVILGLCQNDRIDEAVQ-MFEKMNERNVSPDSWSYGILID 331

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
           GL +  ++ +A+ +F  +L  GV   +  Y  +I GLC +N  D+A+  + D+       
Sbjct: 332 GLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMNRRGCPP 391

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
               Y  MI   C+ G + EA   + ++++ G  P++V YN V+DG CK S   EA  + 
Sbjct: 392 SPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEALLLF 451

Query: 480 REMRKNGLNPD 490
            EM + G  P+
Sbjct: 452 NEMERLGCTPN 462



 Score =  171 bits (434), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 125/458 (27%), Positives = 212/458 (46%), Gaps = 18/458 (3%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC  +   +A +LF DM  RG  P+ V+Y  +I   C+ G ++ A  +  +M   G +P+
Sbjct: 368 LCMANSFDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPD 427

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANL-----VDSLCREG 118
            +TY+ ++ G+ ++  VE A +L+F   ER+    +   +N     L     +D  C+ G
Sbjct: 428 VVTYNTVMDGLCKSSRVEEA-LLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQRG 486

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
            ++E FR+ + M     V +      +I  LC   R   A  ++  M KR   P++V+ N
Sbjct: 487 KLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQN 546

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
           +++HGLCK G    A ++L+  +  G  P   TY  LV G C     E+AR++L  M+++
Sbjct: 547 TLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVAR 606

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
                       +  LC      E   V   M  + C P++ T   +I GFC  G+++  
Sbjct: 607 GLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGG 666

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ-RGYSPGIVTYNAV 357
           LK+  +MV     +PD V + T+   L   GR   AL +L +     R  + G   Y   
Sbjct: 667 LKLFGEMVCAGI-SPDHVVYGTLAAELCKSGRSARALEILREGRESLRSEAWGDEVYRFA 725

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 417
           + GL    ++E A      M+  G +      A ++ GLC+S Q  EA+   ++I+    
Sbjct: 726 VDGLLEAGKMEMALGFVRDMVRGGQLPAPERCASLVAGLCKSGQGGEARAVLEEIM---- 781

Query: 418 IHDNYVYAAMIKGLCRSGK-IHEAVHFLYELVDSGVTP 454
              +  Y    +G  ++ K + E V   YE+ D+ + P
Sbjct: 782 ---DLAYGGKARG--KAAKFVEEMVGKGYEIEDAVLGP 814



 Score =  168 bits (425), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 128/487 (26%), Positives = 222/487 (45%), Gaps = 55/487 (11%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M  +G  P  + +T++I G+C  G    A K+F  M  C   P    Y+VL+        
Sbjct: 1   MFQQGIFPAPLLFTSVIQGWCNVGRTFEAVKIFSLMEECHS-PYPDVYNVLI-------- 51

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
                                           DSL +      V ++ + M       + 
Sbjct: 52  --------------------------------DSLSKRQETEAVKKMVQVMVDRGCFPDS 79

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
           F    ++  LC++G+   A  V+  MR R + P   + + + H LC  G   RA+QLLE 
Sbjct: 80  FTFTTILCGLCKAGKMDEAELVMDEMRSRMIPPYFATSSFLAHELCLRGSMERAFQLLE- 138

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
                 + +   Y ++V  LC  + ++ A ++ + M  K+        +  L  L     
Sbjct: 139 ---IMPVANSSAYNIVVVALCKAARVDDALELARTMSEKRIPLAAGSLDSVLVGLMDSGR 195

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
             E L V     + + +P ++TLN ++ GFC  G++++A ++L  M   + CAPD V++ 
Sbjct: 196 IDEALQVY---RENRREPCLVTLNVLLEGFCSRGQVDKARELLRAM-PDEECAPDEVSYC 251

Query: 320 TIIFGLLNVGRIQEALNL-----LYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVF 374
           T++ GL   GR++EA+ L     L          P +  YN V+ GL +  R++EA ++F
Sbjct: 252 TVLDGLCKAGRVEEAVRLFGDRELPSSSSSSSSPPSLRGYNIVILGLCQNDRIDEAVQMF 311

Query: 375 NCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRS 434
             M    V  DS +Y I+IDGL ++ +L++A+  +  ++          Y ++I GLC +
Sbjct: 312 EKMNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMA 371

Query: 435 GKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
               +A     ++   G  P+ V YNV+ID +CK  M  EA  ++++M ++G  PD VT+
Sbjct: 372 NSFDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTY 431

Query: 495 R-ILDKL 500
             ++D L
Sbjct: 432 NTVMDGL 438



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 112/405 (27%), Positives = 192/405 (47%), Gaps = 16/405 (3%)

Query: 107 FANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMR 166
           F +++   C  G   E  +I   M +  S   +     +IDSL +        ++V VM 
Sbjct: 13  FTSVIQGWCNVGRTFEAVKIFSLMEECHSPYPDVY-NVLIDSLSKRQETEAVKKMVQVMV 71

Query: 167 KRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLE 226
            RG  P   ++ +I+ GLCK G    A  +++E       P   T   L   LC    +E
Sbjct: 72  DRGCFPDSFTFTTILCGLCKAGKMDEAELVMDEMRSRMIPPYFATSSFLAHELCLRGSME 131

Query: 227 KARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVI 286
           +A ++L+ M     V  +   NI + ALC      + L +   M + +      +L++V+
Sbjct: 132 RAFQLLEIM----PVANSSAYNIVVVALCKAARVDDALELARTMSEKRIPLAAGSLDSVL 187

Query: 287 NGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
            G    GRI+EAL+V  +        P  VT   ++ G  + G++ +A  LL + MP   
Sbjct: 188 VGLMDSGRIDEALQVYRENRR----EPCLVTLNVLLEGFCSRGQVDKARELL-RAMPDEE 242

Query: 347 YSPGIVTYNAVLRGLFRLRRVEEA------KEVFNCMLGIGVVADSTTYAIVIDGLCESN 400
            +P  V+Y  VL GL +  RVEEA      +E+ +             Y IVI GLC+++
Sbjct: 243 CAPDEVSYCTVLDGLCKAGRVEEAVRLFGDRELPSSSSSSSSPPSLRGYNIVILGLCQND 302

Query: 401 QLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYN 460
           ++DEA + ++ +   +   D++ Y  +I GL ++GK+++A +   +L+ SGVTP+ V Y 
Sbjct: 303 RIDEAVQMFEKMNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYT 362

Query: 461 VVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
            +I G C  +   +A ++  +M + G  P  VT+ ++      RG
Sbjct: 363 SLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVMIDASCKRG 407


>gi|224092332|ref|XP_002309562.1| predicted protein [Populus trichocarpa]
 gi|222855538|gb|EEE93085.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 133/496 (26%), Positives = 225/496 (45%), Gaps = 44/496 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D    L RV  A  +F  M   G  P+ V++ TLI+G C+ G+   A + FD+    G 
Sbjct: 137 IDCFSHLQRVDLAFSVFSKMIKLGLQPDAVTFNTLINGLCKVGKFAQAVEFFDDFEASGC 196

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P   TY+ ++ G+ +  +   A  L  K+     EE     N   +  L+DSLC++  V
Sbjct: 197 QPTVYTYTTIINGLCKIGETTAAAGLFKKM-----EEAGCQPNVVTYNILIDSLCKDKLV 251

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           NE   I   M   +   + F    +I  LC   R   AS ++  M    + P++ ++N +
Sbjct: 252 NEALDIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPNIFTFNVL 311

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           V  +CK G    A  + +   + G  P   TY  L+ G     ++ +ARK+   M++K  
Sbjct: 312 VDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVEARKLFDAMITKG- 370

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                             C+PD  + N +I G+CK  RI+EA +
Sbjct: 371 ----------------------------------CKPDAFSYNILIKGYCKAKRIDEAKQ 396

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           + N+M+      PD V + T+I GL  +GR++EA +L ++ M   G  P + TY+ +L G
Sbjct: 397 LFNEMIHQGL-TPDNVNYNTLIHGLCQLGRLREAQDL-FKNMHSNGNLPDLFTYSMLLDG 454

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
             +   + +A  +F  M    +  D   Y I+ID +C+   L +A++ + ++     + +
Sbjct: 455 FCKEGYLGKAFRLFRVMQSTYLKPDIAMYNILIDAMCKFGNLKDARKLFSELFVQGLLPN 514

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
             +Y  +I  LC+ G + EA+     +   G  P+   YNV+I G  +   +  A Q++ 
Sbjct: 515 VQIYTTIINNLCKEGLLDEALEAFRNMEGDGCPPDEFSYNVIIRGFLQYKDESRAAQLIG 574

Query: 481 EMRKNGLNPDA--VTW 494
           EMR  G   +A   TW
Sbjct: 575 EMRDRGFVAEAGTTTW 590



 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 129/504 (25%), Positives = 233/504 (46%), Gaps = 22/504 (4%)

Query: 2   DQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEM-DVAYKVFDEMRHCGV 60
           D       + +A   F  M  R  +P ++ +T L+    + G+       +  +M   G+
Sbjct: 67  DDASSFRNIDDALASFNHMLHREPLPCIIQFTKLLSAIVKMGQYYGAVISLSKQMELAGL 126

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+  T S+L+      + V+    L F ++ +M +   L  +   F  L++ LC+ G  
Sbjct: 127 SPDIYTLSILIDCFSHLQRVD----LAFSVFSKMIKL-GLQPDAVTFNTLINGLCKVGKF 181

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +     +D          +    +I+ LC+ G    A+ +   M + G  P++V+YN +
Sbjct: 182 AQAVEFFDDFEASGCQPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNIL 241

Query: 181 VHGLCKHGGCMRAYQLLEEGIQ-FGYL------PSEHTYKVLVEGLCGESDLEKARKVLQ 233
           +  LCK        +L+ E +  F Y+      P   TY  L++GLC     ++A  +L 
Sbjct: 242 IDSLCKD-------KLVNEALDIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASALLN 294

Query: 234 FMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMG 293
            M S   +      N+ + A+C     +E   V   M +   +PDV+T ++++ G+    
Sbjct: 295 EMTSLNIMPNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRM 354

Query: 294 RIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVT 353
            I EA K+ + M+  K C PDA ++  +I G     RI EA  L  +++ Q G +P  V 
Sbjct: 355 EIVEARKLFDAMIT-KGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQ-GLTPDNVN 412

Query: 354 YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413
           YN ++ GL +L R+ EA+++F  M   G + D  TY++++DG C+   L +A R +  + 
Sbjct: 413 YNTLIHGLCQLGRLREAQDLFKNMHSNGNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQ 472

Query: 414 WPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKR 473
                 D  +Y  +I  +C+ G + +A     EL   G+ PN+  Y  +I+  CK  +  
Sbjct: 473 STYLKPDIAMYNILIDAMCKFGNLKDARKLFSELFVQGLLPNVQIYTTIINNLCKEGLLD 532

Query: 474 EAYQILREMRKNGLNPDAVTWRIL 497
           EA +  R M  +G  PD  ++ ++
Sbjct: 533 EALEAFRNMEGDGCPPDEFSYNVI 556


>gi|115482712|ref|NP_001064949.1| Os10g0495200 [Oryza sativa Japonica Group]
 gi|78708847|gb|ABB47822.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639558|dbj|BAF26863.1| Os10g0495200 [Oryza sativa Japonica Group]
          Length = 782

 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 140/515 (27%), Positives = 246/515 (47%), Gaps = 42/515 (8%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           +A+  + +M  RG +P+VV+Y+++I   C+   MD A +V + M   GV+P+ +TY+ ++
Sbjct: 219 KAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSIL 278

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP 131
            G   +   + A   + K+       + +  N   +++L++ LC+ G   E  +I + M 
Sbjct: 279 HGYCSSGQPKEAIGTLKKM-----RSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMT 333

Query: 132 ---------------QGKSVNEEFACGH-MIDSLCRSG-------------------RNH 156
                          QG +        H ++D + R+G                   +  
Sbjct: 334 KRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVD 393

Query: 157 GASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLV 216
            A  V   MR+ GL P++V Y +++  LCK G    A    E+ I  G  P+   Y  L+
Sbjct: 394 QAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLI 453

Query: 217 EGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQ 276
            GLC     +KA +++  ML +     T   N  + + C      E   +   M++   +
Sbjct: 454 HGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVK 513

Query: 277 PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALN 336
           PD+IT NT+I+G C  G+++EA K+L  MV+     PD VT+ T+I G   V R+ +AL 
Sbjct: 514 PDIITYNTLIDGCCLAGKMDEATKLLASMVSVGV-KPDIVTYGTLINGYCRVSRMDDALA 572

Query: 337 LLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 396
           L ++ M   G SP I+TYN +L+GLF  RR   AKE++  +   G   + +TY I++ GL
Sbjct: 573 L-FKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGL 631

Query: 397 CESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNI 456
           C++N  DEA R + ++       +   +  MI  L + G++ EA         +G+ P++
Sbjct: 632 CKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDV 691

Query: 457 VCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 491
             Y+++ +   +     E   +   M +NG + D+
Sbjct: 692 RTYSLMAENLIEQGSLEELDDLFLSMEENGCSADS 726



 Score =  191 bits (486), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 132/515 (25%), Positives = 244/515 (47%), Gaps = 50/515 (9%)

Query: 4   LCGLSRVGEAHKLFF---DMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           LC  +R  EA +L     D +  G  P+VVSY T+++G+ + G+ D AY  + EM   G+
Sbjct: 173 LCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGI 232

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           LP+ +TYS ++  + + + +++A  ++  + +     + ++ N+     ++   C  G  
Sbjct: 233 LPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNS-----ILHGYCSSGQP 287

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E     + M              +++ LC++GR+  A ++   M KRGL P + +Y ++
Sbjct: 288 KEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTL 347

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G    G  +  + LL+  ++ G  P  H + +L+   C  +   K  KV Q ML    
Sbjct: 348 LQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILI---CAYA---KQEKVDQAML---- 397

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                    V   M Q    P+V+   TVI+  CK G +++A+ 
Sbjct: 398 -------------------------VFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAML 432

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
               M+  +   P+ + +T++I GL    +  +A  L+ +++  RG     + +N+++  
Sbjct: 433 YFEQMI-DEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEML-DRGICLNTIFFNSIIDS 490

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
             +  RV E++++F+ M+ IGV  D  TY  +IDG C + ++DEA +    +V      D
Sbjct: 491 HCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPD 550

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              Y  +I G CR  ++ +A+    E+V SGV+PNI+ YN+++ G         A ++  
Sbjct: 551 IVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYV 610

Query: 481 EMRKNGLNPDAVTWRILDKLHG---NRGNDFGLRI 512
            + K+G   +  T+ I+  LHG   N   D  LR+
Sbjct: 611 SITKSGTQLELSTYNII--LHGLCKNNLTDEALRM 643



 Score =  171 bits (433), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 119/479 (24%), Positives = 229/479 (47%), Gaps = 11/479 (2%)

Query: 23  RGHVPNVVSYTTLIHGYC---RTGE-MDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTR 78
           +G   + +++T L+ G C   RT + MD+   V   M   G +P+  +Y+ L++G+    
Sbjct: 121 KGFRVDAITFTPLLKGLCADKRTSDAMDI---VLRRMTELGCIPDVFSYNNLLKGLCDEN 177

Query: 79  DVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNE 138
             + A  L+  + +         V   ++  +++   +EG  ++ +    +M     + +
Sbjct: 178 RSQEALELLHMMADDRGGGSPPDV--VSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPD 235

Query: 139 EFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLE 198
                 +I +LC++     A  V+  M K G+ P  ++YNSI+HG C  G    A   L+
Sbjct: 236 VVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLK 295

Query: 199 EGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIK 258
           +    G  P+  TY  L+  LC      +ARK+   M  +            L+      
Sbjct: 296 KMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKG 355

Query: 259 NPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTF 318
              E+  +L  M++   QPD    N +I  + K  ++++A+ V + M       P+ V +
Sbjct: 356 ALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGL-NPNVVCY 414

Query: 319 TTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCML 378
            T+I  L   G + +A+ L ++ M   G +P I+ Y +++ GL    + ++A+E+   ML
Sbjct: 415 GTVIDVLCKSGSVDDAM-LYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEML 473

Query: 379 GIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIH 438
             G+  ++  +  +ID  C+  ++ E+++ +D +V      D   Y  +I G C +GK+ 
Sbjct: 474 DRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMD 533

Query: 439 EAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           EA   L  +V  GV P+IV Y  +I+G C++S   +A  + +EM  +G++P+ +T+ I+
Sbjct: 534 EATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNII 592



 Score =  171 bits (433), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 121/475 (25%), Positives = 217/475 (45%), Gaps = 44/475 (9%)

Query: 26  VPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANV 85
            P V +Y  LI   CR G +D+ +     +   G   +++T++ L++G+   +   R + 
Sbjct: 89  TPTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADK---RTSD 145

Query: 86  LMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHM 145
            M  +  RM E                     G + +V                F+  ++
Sbjct: 146 AMDIVLRRMTE--------------------LGCIPDV----------------FSYNNL 169

Query: 146 IDSLCRSGRNHGASRVVYVM---RKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQ 202
           +  LC   R+  A  ++++M   R  G  P +VSYN++++G  K G   +AY    E + 
Sbjct: 170 LKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLD 229

Query: 203 FGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTE 262
            G LP   TY  ++  LC    ++KA +VL  M+    +      N  L   C    P E
Sbjct: 230 RGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKE 289

Query: 263 LLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTII 322
            +  L  M     +P+V+T ++++N  CK GR  EA K+ + M   +   PD  T+ T++
Sbjct: 290 AIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTK-RGLEPDIATYRTLL 348

Query: 323 FGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGV 382
            G    G + E ++ L  +M + G  P    +N ++    +  +V++A  VF+ M   G+
Sbjct: 349 QGYATKGALVE-MHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGL 407

Query: 383 VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVH 442
             +   Y  VID LC+S  +D+A  +++ ++      +  VY ++I GLC   K  +A  
Sbjct: 408 NPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEE 467

Query: 443 FLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            + E++D G+  N + +N +ID  CK     E+ ++   M + G+ PD +T+  L
Sbjct: 468 LILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTL 522



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 109/463 (23%), Positives = 207/463 (44%), Gaps = 42/463 (9%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M+ LC   R  EA K+F  M  RG  P++ +Y TL+ GY   G +   + + D M   G+
Sbjct: 313 MNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGI 372

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+   +++L+    +   V++A ++  K+      +  L+ N   +  ++D LC+ G V
Sbjct: 373 QPDHHVFNILICAYAKQEKVDQAMLVFSKM-----RQHGLNPNVVCYGTVIDVLCKSGSV 427

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           ++     E M              +I  LC   +   A  ++  M  RG+  + + +NSI
Sbjct: 428 DDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSI 487

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +   CK G  + + +L +  ++ G  P   TY  L++G C    +++A K+L  M+S   
Sbjct: 488 IDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVS--- 544

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                              +PD++T  T+ING+C++ R+++AL 
Sbjct: 545 --------------------------------VGVKPDIVTYGTLINGYCRVSRMDDALA 572

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +  +MV+    +P+ +T+  I+ GL +  R   A   LY  + + G    + TYN +L G
Sbjct: 573 LFKEMVSSGV-SPNIITYNIILQGLFHTRRTAAAKE-LYVSITKSGTQLELSTYNIILHG 630

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L +    +EA  +F  +    +  ++ T+ I+I  L +  ++DEAK  +        + D
Sbjct: 631 LCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPD 690

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463
              Y+ M + L   G + E       + ++G + +    N ++
Sbjct: 691 VRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIV 733



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 121/230 (52%), Gaps = 2/230 (0%)

Query: 278 DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNL 337
           D IT   ++ G C   R  +A+ ++   +    C PD  ++  ++ GL +  R QEAL L
Sbjct: 126 DAITFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALEL 185

Query: 338 LYQVMPQRG--YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG 395
           L+ +   RG    P +V+YN VL G F+    ++A   ++ ML  G++ D  TY+ +I  
Sbjct: 186 LHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAA 245

Query: 396 LCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN 455
           LC++  +D+A    + +V    + D   Y +++ G C SG+  EA+  L ++   GV PN
Sbjct: 246 LCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPN 305

Query: 456 IVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
           +V Y+ +++  CK     EA +I   M K GL PD  T+R L + +  +G
Sbjct: 306 VVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKG 355



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 86/334 (25%), Positives = 150/334 (44%), Gaps = 45/334 (13%)

Query: 170 LTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKAR 229
           +TP++ +Y  ++   C+ G     +  L   ++ G+     T+  L++GLC +     A 
Sbjct: 88  VTPTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAM 147

Query: 230 KVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGF 289
            +                                  VL  M +  C PDV + N ++ G 
Sbjct: 148 DI----------------------------------VLRRMTELGCIPDVFSYNNLLKGL 173

Query: 290 CKMGRIEEALKVLNDMVA--GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGY 347
           C   R +EAL++L+ M    G    PD V++ T++ G    G   +A +  Y  M  RG 
Sbjct: 174 CDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSDKAYS-TYHEMLDRGI 232

Query: 348 SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA-- 405
            P +VTY++++  L + + +++A EV N M+  GV+ D  TY  ++ G C S Q  EA  
Sbjct: 233 LPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIG 292

Query: 406 --KRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463
             K+   D V P+ +     Y++++  LC++G+  EA      +   G+ P+I  Y  ++
Sbjct: 293 TLKKMRSDGVEPNVV----TYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLL 348

Query: 464 DGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            G        E + +L  M +NG+ PD   + IL
Sbjct: 349 QGYATKGALVEMHALLDLMVRNGIQPDHHVFNIL 382



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 107/239 (44%), Gaps = 6/239 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C   ++ EA KL   M S G  P++V+Y TLI+GYCR   MD A  +F EM   GV
Sbjct: 523 IDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGV 582

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +TY+++++G+  TR    A  L   + +   + E LS  N     ++  LC+    
Sbjct: 583 SPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLE-LSTYNI----ILHGLCKNNLT 637

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E  R+ +++       E      MI +L + GR   A  +       GL P + +Y+ +
Sbjct: 638 DEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLM 697

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
              L + G       L     + G          +V  L    D+ +A   L FM+ +K
Sbjct: 698 AENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKLLQRGDITRAGTYL-FMIDEK 755



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 68/298 (22%), Positives = 120/298 (40%), Gaps = 40/298 (13%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C   RV E+ KLF  M   G  P++++Y TLI G C  G+MD A K+   M   GV
Sbjct: 488 IDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGV 547

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TY  L+ G  R   ++ A      L++ M       V++    N++         
Sbjct: 548 KPDIVTYGTLINGYCRVSRMDDA----LALFKEM-------VSSGVSPNII--------- 587

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
              + I                  ++  L  + R   A  +   + K G    L +YN I
Sbjct: 588 --TYNI------------------ILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNII 627

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +HGLCK+     A ++ +            T+ +++  L     +++A+ +     +   
Sbjct: 628 LHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGL 687

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
           V   R  ++    L    +  EL ++ + M +  C  D   LN+++    + G I  A
Sbjct: 688 VPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKLLQRGDITRA 745


>gi|293330959|ref|NP_001169662.1| uncharacterized protein LOC100383543 [Zea mays]
 gi|224030695|gb|ACN34423.1| unknown [Zea mays]
 gi|414870691|tpg|DAA49248.1| TPA: hypothetical protein ZEAMMB73_502001 [Zea mays]
          Length = 756

 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 134/491 (27%), Positives = 241/491 (49%), Gaps = 9/491 (1%)

Query: 8   SRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTY 67
           SR+     ++ +M  RG  P+VV+  TLI   CR  ++  A  + +EM    V P+  T+
Sbjct: 174 SRMKLLESVYNEMTDRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHAVAPDETTF 233

Query: 68  SVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF-RI 126
           + L++G +    +E A  +  K+ E       ++VN      L++  C+ G V +    I
Sbjct: 234 TTLMQGFIEEGSIEAALRVKTKMMETGCSPTRVTVNV-----LINGYCKMGRVEDALGYI 288

Query: 127 AEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK 186
            +++  G    ++      +  LC++G    A +V+ +M + G  P + +YN++++ L K
Sbjct: 289 QKEIADGFE-PDQVTYNTFVHCLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSK 347

Query: 187 HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRI 246
           +G    A  ++ + +  G LP   T+  L+  LC ++ LE+A  + + +  K        
Sbjct: 348 NGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALCSQNRLEEALDLARELTVKGLSPDVYT 407

Query: 247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV 306
            NI + ALC + +P   + +   M  + C PD +T N +I+  C MG++  AL +L +M 
Sbjct: 408 FNILINALCKVGDPHLGIRLFEEMKSSGCAPDEVTYNILIDHLCSMGKLVNALDLLKEME 467

Query: 307 AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 366
           +   C    VT+ TII  L    RI+EA  +  Q M   G S   VT+N ++ GL + +R
Sbjct: 468 SNG-CPRSTVTYNTIIDALCKQMRIEEAEEVFDQ-MDAHGISRSAVTFNTLIDGLCKAKR 525

Query: 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAA 426
           +++A E+   M+  G+   + TY  ++   C+   L +A    + +       D   Y  
Sbjct: 526 IDDATELIEQMVKEGLQPSNITYNSILTHYCKQGDLKKAADILETMTANGFEIDVVTYGT 585

Query: 427 MIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG 486
           +I GLC++G+   A+  L  +   G+ P    YN VI    + +  R+A  + REM + G
Sbjct: 586 LINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALSLFREMTEVG 645

Query: 487 LNPDAVTWRIL 497
             PDA+T++I+
Sbjct: 646 EPPDALTYKIV 656



 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 126/470 (26%), Positives = 225/470 (47%), Gaps = 7/470 (1%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           + + G   +   Y  L++       M +   V++EM   G+ P+ +T + L++ + R   
Sbjct: 151 LNTFGVQADTAVYNHLLNVLAEGSRMKLLESVYNEMTDRGIQPDVVTLNTLIKALCRAHQ 210

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
           V R  VLM    E M     ++ +   F  L+     EG +    R+   M +       
Sbjct: 211 V-RTAVLML---EEMSSHA-VAPDETTFTTLMQGFIEEGSIEAALRVKTKMMETGCSPTR 265

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
                +I+  C+ GR   A   +      G  P  V+YN+ VH LC++G    A ++++ 
Sbjct: 266 VTVNVLINGYCKMGRVEDALGYIQKEIADGFEPDQVTYNTFVHCLCQNGHVSHALKVMDL 325

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
            +Q G+ P   TY  ++  L    +L++A+ ++  M+ +  +  T   N  + ALC    
Sbjct: 326 MLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALCSQNR 385

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
             E L++   +      PDV T N +IN  CK+G     +++  +M +   CAPD VT+ 
Sbjct: 386 LEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSG-CAPDEVTYN 444

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
            +I  L ++G++  AL+LL + M   G     VTYN ++  L +  R+EEA+EVF+ M  
Sbjct: 445 ILIDHLCSMGKLVNALDLLKE-MESNGCPRSTVTYNTIIDALCKQMRIEEAEEVFDQMDA 503

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
            G+   + T+  +IDGLC++ ++D+A    + +V       N  Y +++   C+ G + +
Sbjct: 504 HGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPSNITYNSILTHYCKQGDLKK 563

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNP 489
           A   L  +  +G   ++V Y  +I+G CK    + A ++LR MR  G+ P
Sbjct: 564 AADILETMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRP 613



 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 137/506 (27%), Positives = 227/506 (44%), Gaps = 10/506 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   +V  A  +  +M S    P+  ++TTL+ G+   G ++ A +V  +M   G  P 
Sbjct: 205 LCRAHQVRTAVLMLEEMSSHAVAPDETTFTTLMQGFIEEGSIEAALRVKTKMMETGCSPT 264

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEED-LSVNNAAFANLVDSLCREGYVNE 122
            +T +VL+ G  +   VE A      L    KE  D    +   +   V  LC+ G+V+ 
Sbjct: 265 RVTVNVLINGYCKMGRVEDA------LGYIQKEIADGFEPDQVTYNTFVHCLCQNGHVSH 318

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
             ++ + M Q     + F    +I+ L ++G    A  +V  M  RG  P   ++N+++ 
Sbjct: 319 ALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIV 378

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
            LC       A  L  E    G  P  +T+ +L+  LC   D     ++ + M S     
Sbjct: 379 ALCSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCAP 438

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
                NI +  LC +      L++L  M    C    +T NT+I+  CK  RIEEA +V 
Sbjct: 439 DEVTYNILIDHLCSMGKLVNALDLLKEMESNGCPRSTVTYNTIIDALCKQMRIEEAEEVF 498

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
           + M A    +  AVTF T+I GL    RI +A  L+ Q M + G  P  +TYN++L    
Sbjct: 499 DQMDAHGI-SRSAVTFNTLIDGLCKAKRIDDATELIEQ-MVKEGLQPSNITYNSILTHYC 556

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
           +   +++A ++   M   G   D  TY  +I+GLC++ +   A +    +          
Sbjct: 557 KQGDLKKAADILETMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPK 616

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMK-REAYQILRE 481
            Y  +I+ L R   + +A+    E+ + G  P+ + Y +V  G C+     +EA+  L E
Sbjct: 617 AYNPVIQSLFRRNNLRDALSLFREMTEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFLVE 676

Query: 482 MRKNGLNPDAVTWRILDKLHGNRGND 507
           M   G  P+  ++R+L +   N G D
Sbjct: 677 MVNKGFMPEFSSFRMLAEGLLNLGMD 702



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 105/389 (26%), Positives = 169/389 (43%), Gaps = 72/389 (18%)

Query: 144 HMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQF 203
           H+++ L    R      V   M  RG+ P +V+ N+++  LC+      A  +LEE    
Sbjct: 165 HLLNVLAEGSRMKLLESVYNEMTDRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSH 224

Query: 204 GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTEL 263
              P E T+  L++G   E  +E A +V           +T+                  
Sbjct: 225 AVAPDETTFTTLMQGFIEEGSIEAALRV-----------KTK------------------ 255

Query: 264 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF 323
                 M++T C P  +T+N +ING+CKMGR+E+AL  +   +A  F  PD VT+ T + 
Sbjct: 256 ------MMETGCSPTRVTVNVLINGYCKMGRVEDALGYIQKEIADGF-EPDQVTYNTFVH 308

Query: 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 383
            L   G +  AL ++  +M Q G+ P + TYN V+  L +   ++EAK + N M+  G +
Sbjct: 309 CLCQNGHVSHALKVM-DLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCL 367

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
            D+TT+  +I  LC  N+L+EA     ++       D Y +  +I  LC+ G  H  +  
Sbjct: 368 PDTTTFNTLIVALCSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRL 427

Query: 444 LYELVDSGVTPN-----------------------------------IVCYNVVIDGACK 468
             E+  SG  P+                                    V YN +ID  CK
Sbjct: 428 FEEMKSSGCAPDEVTYNILIDHLCSMGKLVNALDLLKEMESNGCPRSTVTYNTIIDALCK 487

Query: 469 LSMKREAYQILREMRKNGLNPDAVTWRIL 497
                EA ++  +M  +G++  AVT+  L
Sbjct: 488 QMRIEEAEEVFDQMDAHGISRSAVTFNTL 516



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 97/378 (25%), Positives = 179/378 (47%), Gaps = 10/378 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC  +R+ EA  L  ++  +G  P+V ++  LI+  C+ G+  +  ++F+EM+  G  P+
Sbjct: 380 LCSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCAPD 439

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY++L+  +     +  A  L+ ++     E      +   +  ++D+LC++  + E 
Sbjct: 440 EVTYNILIDHLCSMGKLVNALDLLKEM-----ESNGCPRSTVTYNTIIDALCKQMRIEEA 494

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             + + M              +ID LC++ R   A+ ++  M K GL PS ++YNSI+  
Sbjct: 495 EEVFDQMDAHGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPSNITYNSILTH 554

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK G   +A  +LE     G+     TY  L+ GLC     + A K+L+ M  K     
Sbjct: 555 YCKQGDLKKAADILETMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPT 614

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK-MGRIEEALKVL 302
            +  N  +++L    N  + L++   M +    PD +T   V  G C+  G I+EA   L
Sbjct: 615 PKAYNPVIQSLFRRNNLRDALSLFREMTEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFL 674

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
            +MV   F  P+  +F  +  GLLN+G     ++ +  ++ +  +    V+    +RG  
Sbjct: 675 VEMVNKGF-MPEFSSFRMLAEGLLNLGMDDYLISAIELIIEKAKFRESDVS---AIRGYL 730

Query: 363 RLRRVEEAKEVFNCMLGI 380
           ++R+  +A   F  +L I
Sbjct: 731 KIRKYYDALATFGRLLEI 748



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/303 (29%), Positives = 142/303 (46%), Gaps = 6/303 (1%)

Query: 195 QLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRAL 254
           QL   G+Q       H   VL EG    S ++    V   M  +         N  ++AL
Sbjct: 150 QLNTFGVQADTAVYNHLLNVLAEG----SRMKLLESVYNEMTDRGIQPDVVTLNTLIKAL 205

Query: 255 CLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPD 314
           C        + +L  M      PD  T  T++ GF + G IE AL+V   M+    C+P 
Sbjct: 206 CRAHQVRTAVLMLEEMSSHAVAPDETTFTTLMQGFIEEGSIEAALRVKTKMMETG-CSPT 264

Query: 315 AVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVF 374
            VT   +I G   +GR+++AL  + + +   G+ P  VTYN  +  L +   V  A +V 
Sbjct: 265 RVTVNVLINGYCKMGRVEDALGYIQKEIAD-GFEPDQVTYNTFVHCLCQNGHVSHALKVM 323

Query: 375 NCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRS 434
           + ML  G   D  TY  VI+ L ++ +LDEAK   + +V    + D   +  +I  LC  
Sbjct: 324 DLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALCSQ 383

Query: 435 GKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
            ++ EA+    EL   G++P++  +N++I+  CK+       ++  EM+ +G  PD VT+
Sbjct: 384 NRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCAPDEVTY 443

Query: 495 RIL 497
            IL
Sbjct: 444 NIL 446



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 125/239 (52%), Gaps = 6/239 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC + ++  A  L  +M+S G   + V+Y T+I   C+   ++ A +VFD+M   G+
Sbjct: 447 IDHLCSMGKLVNALDLLKEMESNGCPRSTVTYNTIIDALCKQMRIEEAEEVFDQMDAHGI 506

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             +++T++ L+ G+ + + ++ A     +L E+M  +E L  +N  + +++   C++G +
Sbjct: 507 SRSAVTFNTLIDGLCKAKRIDDAT----ELIEQMV-KEGLQPSNITYNSILTHYCKQGDL 561

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +   I E M       +    G +I+ LC++GR   A +++  MR +G+ P+  +YN +
Sbjct: 562 KKAADILETMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPV 621

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLC-GESDLEKARKVLQFMLSK 238
           +  L +      A  L  E  + G  P   TYK++  GLC G   +++A   L  M++K
Sbjct: 622 IQSLFRRNNLRDALSLFREMTEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFLVEMVNK 680



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/234 (22%), Positives = 96/234 (41%), Gaps = 35/234 (14%)

Query: 296 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG-------------------------- 329
           E AL++LN  +A +  AP    +  II  L   G                          
Sbjct: 70  EAALQMLNSALAREDFAPSRAVYEEIIQKLGTAGAFDLMEGLVREMRREGHEAGAGVVRS 129

Query: 330 ---------RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI 380
                    R  +A++L+   +   G       YN +L  L    R++  + V+N M   
Sbjct: 130 FVESYARLRRFDDAVDLVRNQLNTFGVQADTAVYNHLLNVLAEGSRMKLLESVYNEMTDR 189

Query: 381 GVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEA 440
           G+  D  T   +I  LC ++Q+  A    +++   +   D   +  +++G    G I  A
Sbjct: 190 GIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHAVAPDETTFTTLMQGFIEEGSIEAA 249

Query: 441 VHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
           +    +++++G +P  V  NV+I+G CK+    +A   +++   +G  PD VT+
Sbjct: 250 LRVKTKMMETGCSPTRVTVNVLINGYCKMGRVEDALGYIQKEIADGFEPDQVTY 303


>gi|449432854|ref|XP_004134213.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Cucumis sativus]
          Length = 904

 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 134/490 (27%), Positives = 236/490 (48%), Gaps = 8/490 (1%)

Query: 16  LFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVL 75
           LF  M+  G+  NV  +TTLI  + R G +D A  + DEM+   + P+ + Y+V +    
Sbjct: 222 LFQQMQELGYAVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFG 281

Query: 76  RTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKS 135
           +   V+ A    +K +  MK    L +++  + +++  LC+   +NE   + E M Q K 
Sbjct: 282 KAGKVDMA----WKFFHEMK-ANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQ 336

Query: 136 VNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQ 195
           V   +A   MI     +G+   A  ++   R++G  PS+VSYN I+  L + G    A +
Sbjct: 337 VPCAYAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALK 396

Query: 196 LLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALC 255
             EE ++   +P+  TY ++++ LC    LE A  V   M            NI +  LC
Sbjct: 397 KFEE-MKKDAIPNLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLC 455

Query: 256 LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA 315
             +   +  ++   +    C+PD +T  ++I G  + GR++EA K+   M+      P+A
Sbjct: 456 KAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDAN-QIPNA 514

Query: 316 VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN 375
           V +T++I      GR ++  + +Y  M + G SP ++  N  +  +F+   +E+ + +F 
Sbjct: 515 VVYTSLIRNFFKCGRKEDG-HKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQ 573

Query: 376 CMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG 435
            +  +G + D+ +Y I+I GL ++    EA   +  +     + D   Y  +I G C+SG
Sbjct: 574 EIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSG 633

Query: 436 KIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWR 495
           K+++A   L E+   G  P +V Y  VIDG  K+    EAY +  E +  G+  + V + 
Sbjct: 634 KVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYS 693

Query: 496 ILDKLHGNRG 505
            L    G  G
Sbjct: 694 SLIDGFGKVG 703



 Score =  191 bits (486), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 126/494 (25%), Positives = 236/494 (47%), Gaps = 9/494 (1%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           +V EA K F +MK +  +PN+ +Y  +I   C+ G+++ A  V D M+  G+ PN +T +
Sbjct: 390 QVDEALKKFEEMK-KDAIPNLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVN 448

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
           ++V  + + + ++ A  +   L     + +    +   + +L++ L R G V+E +++ E
Sbjct: 449 IMVDRLCKAQRLDDACSIFEGL-----DHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYE 503

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
            M     +        +I +  + GR     ++   M + G +P L+  N+ +  + K G
Sbjct: 504 QMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAG 563

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
              +   L +E    G++P   +Y +L+ GL       +A ++   M  +  V  TR  N
Sbjct: 564 EIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYN 623

Query: 249 IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 308
             +   C      +   +L  M     +P V+T  +VI+G  K+ R++EA  +L +    
Sbjct: 624 TVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAY-MLFEEAKS 682

Query: 309 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE 368
           K    + V ++++I G   VGRI EA  ++ ++M Q+G +P + T+N +L  L +   + 
Sbjct: 683 KGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELM-QKGLTPNVYTWNCLLDALVKAEEIS 741

Query: 369 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI 428
           EA   F  M  +    +  TY+I+I GLC+  + ++A  FW ++       + + Y  MI
Sbjct: 742 EALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMI 801

Query: 429 KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLN 488
            GL ++G I EA     +  + G   +   YN +I+G    +   +AY++  E R  G +
Sbjct: 802 SGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLSNANRASDAYRLFEEARLKGCS 861

Query: 489 PDAVTWRI-LDKLH 501
               T  + LD LH
Sbjct: 862 IYTKTCVVLLDSLH 875



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 130/507 (25%), Positives = 233/507 (45%), Gaps = 16/507 (3%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R+ EA +LF  M     VP   +Y T+I GY   G+ + AY + +  R  G +P+
Sbjct: 315 LCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIPS 374

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            ++Y+ ++  + R   V+ A     K +E MK+  D   N + +  ++D LC+ G +   
Sbjct: 375 VVSYNCILSCLGRKGQVDEA----LKKFEEMKK--DAIPNLSTYNIMIDMLCKAGKLETA 428

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             + + M              M+D LC++ R   A  +   +  +   P  V+Y S++ G
Sbjct: 429 LVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEG 488

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGL--CGESDLEKARKVLQFMLSKKDV 241
           L +HG    AY+L E+ +    +P+   Y  L+     CG    E   K+   ML     
Sbjct: 489 LGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRK--EDGHKIYNEMLRLGCS 546

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVF--MLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
               + N Y+   C+ K         +F  +      PD  +   +I+G  K G   EA 
Sbjct: 547 PDLLLLNTYMD--CVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAY 604

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           ++   M   + C  D   + T+I G    G++ +A  LL + M  +G+ P +VTY +V+ 
Sbjct: 605 ELFYTM-KEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEE-MKTKGHEPTVVTYGSVID 662

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
           GL ++ R++EA  +F      G+  +   Y+ +IDG  +  ++DEA    ++++      
Sbjct: 663 GLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTP 722

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           + Y +  ++  L ++ +I EA+     + D   TPN + Y+++I G CK+    +A+   
Sbjct: 723 NVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFW 782

Query: 480 REMRKNGLNPDAVTWRILDKLHGNRGN 506
           +EM+K G  P+  T+  +       GN
Sbjct: 783 QEMQKQGFKPNVFTYTTMISGLAKAGN 809



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 106/411 (25%), Positives = 204/411 (49%), Gaps = 7/411 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D+LC   R+ +A  +F  +  +   P+ V+Y +LI G  R G +D AYK++++M     
Sbjct: 451 VDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQ 510

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +PN++ Y+ L+R   +    E  + +  ++  R+    DL + N      +D + + G +
Sbjct: 511 IPNAVVYTSLIRNFFKCGRKEDGHKIYNEML-RLGCSPDLLLLN----TYMDCVFKAGEI 565

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +   + +++     + +  +   +I  L ++G  H A  + Y M+++G      +YN++
Sbjct: 566 EKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTV 625

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G CK G   +AYQLLEE    G+ P+  TY  +++GL     L++A  + +   SK  
Sbjct: 626 IDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGI 685

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                I +  +     +    E   ++  ++Q    P+V T N +++   K   I EAL 
Sbjct: 686 ELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALV 745

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
               M   K C P+ +T++ +I GL  + +  +A  + +Q M ++G+ P + TY  ++ G
Sbjct: 746 CFQSMKDLK-CTPNYITYSILIHGLCKIRKFNKAF-VFWQEMQKQGFKPNVFTYTTMISG 803

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDD 411
           L +   + EA  +F      G VADS  Y  +I+GL  +N+  +A R +++
Sbjct: 804 LAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLSNANRASDAYRLFEE 854



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 102/475 (21%), Positives = 202/475 (42%), Gaps = 51/475 (10%)

Query: 66  TYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLS---VNNAAFANLVDSLCREGYVNE 122
            Y+ L+  + RTR         F   E++ EE  ++    +N     +V S  +   + E
Sbjct: 132 AYNSLLMVMARTRK--------FNCLEQILEEMSIAGFGPSNNTCIEIVLSFIKSRKLRE 183

Query: 123 VFRIAEDMPQGK---------------SVNEEFACG----------------HMIDSL-- 149
            F   + M + K               S + +  C                 H+  +L  
Sbjct: 184 AFTFIQTMRKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIR 243

Query: 150 --CRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLP 207
              R GR   A  ++  M+   L P +V YN  +    K G    A++   E    G + 
Sbjct: 244 VFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKFFHEMKANGLVL 303

Query: 208 SEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVL 267
            + TY  ++  LC    L +A ++ + M   K V      N  +    +     +  ++L
Sbjct: 304 DDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLL 363

Query: 268 VFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLN 327
               +  C P V++ N +++   + G+++EALK   +M   K   P+  T+  +I  L  
Sbjct: 364 ERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEM--KKDAIPNLSTYNIMIDMLCK 421

Query: 328 VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADST 387
            G+++ AL ++   M   G  P ++T N ++  L + +R+++A  +F  +       D+ 
Sbjct: 422 AGKLETAL-VVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAV 480

Query: 388 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYEL 447
           TY  +I+GL    ++DEA + ++ ++  + I +  VY ++I+   + G+  +      E+
Sbjct: 481 TYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEM 540

Query: 448 VDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
           +  G +P+++  N  +D   K     +   + +E++  G  PDA ++ IL  +HG
Sbjct: 541 LRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTIL--IHG 593



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 124/254 (48%), Gaps = 5/254 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C   +V +A++L  +MK++GH P VV+Y ++I G  +   +D AY +F+E +  G+
Sbjct: 626 IDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGI 685

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             N + YS L+ G  +   ++ A ++M +L ++      L+ N   +  L+D+L +   +
Sbjct: 686 ELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQK-----GLTPNVYTWNCLLDALVKAEEI 740

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E     + M   K          +I  LC+  + + A      M+K+G  P++ +Y ++
Sbjct: 741 SEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTM 800

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GL K G  + A  L E+  + G +     Y  ++EGL   +    A ++ +    K  
Sbjct: 801 ISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLSNANRASDAYRLFEEARLKGC 860

Query: 241 VDRTRICNIYLRAL 254
              T+ C + L +L
Sbjct: 861 SIYTKTCVVLLDSL 874



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 65/277 (23%), Positives = 121/277 (43%), Gaps = 7/277 (2%)

Query: 234 FMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQC----QPDVITLNTVINGF 289
           F  +++  DR   C     +L ++   T   N L  +L+        P   T   ++  F
Sbjct: 117 FRWAERLTDRAH-CREAYNSLLMVMARTRKFNCLEQILEEMSIAGFGPSNNTCIEIVLSF 175

Query: 290 CKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSP 349
            K  ++ EA   +  M   KF  P    +T +I G L+  R  + +  L+Q M + GY+ 
Sbjct: 176 IKSRKLREAFTFIQTMRKLKF-RPAFSAYTNLI-GALSTSRDSDCMLTLFQQMQELGYAV 233

Query: 350 GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFW 409
            +  +  ++R   R  RV+ A  + + M    +  D   Y + ID   ++ ++D A +F+
Sbjct: 234 NVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKFF 293

Query: 410 DDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKL 469
            ++     + D+  Y +MI  LC++ +++EAV     +  +   P    YN +I G    
Sbjct: 294 HEMKANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMA 353

Query: 470 SMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
               +AY +L   R+ G  P  V++  +    G +G 
Sbjct: 354 GKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQ 390



 Score = 39.3 bits (90), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 3/97 (3%)

Query: 4   LCGLSRVG---EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           + GL++ G   EA  LF   K +G V +   Y  +I G         AY++F+E R  G 
Sbjct: 801 ISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLSNANRASDAYRLFEEARLKGC 860

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEE 97
              + T  VL+  + +   +E+A ++   L E  K +
Sbjct: 861 SIYTKTCVVLLDSLHKAECIEQAAIVGAVLRETAKAQ 897


>gi|224145829|ref|XP_002325779.1| predicted protein [Populus trichocarpa]
 gi|222862654|gb|EEF00161.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 126/470 (26%), Positives = 229/470 (48%), Gaps = 42/470 (8%)

Query: 24  GHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERA 83
           G  P ++++TTLI+G C+ GE   A ++FD+M   G  P+  TY+ ++ G+ +  +   A
Sbjct: 156 GLQPTIITFTTLINGLCKAGEFAQALELFDDMVARGCQPDVYTYTTIINGLCKMGETAAA 215

Query: 84  NVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACG 143
             L+ K+ E   + + ++     ++ L+DSLC++                + VNE     
Sbjct: 216 AGLIKKMGEVGCQPDVVT-----YSTLIDSLCKD----------------RLVNE----- 249

Query: 144 HMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQF 203
                         A  +   M+ +G++P++VSY S++ GLC       A  +L E    
Sbjct: 250 --------------ALDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWKEASAMLNEMTSL 295

Query: 204 GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTEL 263
             +P   T+ +L++  C E ++ +A+ VL+ M            N  +    L     E 
Sbjct: 296 NIMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLMHGYSLQMEVVEA 355

Query: 264 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF 323
             +   M+   C+PDV + + +ING+C + RI+EA ++ N+M+      P+ V++TT+I 
Sbjct: 356 RKLFDVMITRGCKPDVFSYSILINGYCMVKRIDEAKQLFNEMIHQGL-TPNTVSYTTLIH 414

Query: 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 383
               +G+++EA  L ++ M   GY P + TY+ +L G  +   + +A  +F  M G  + 
Sbjct: 415 AFCQLGKLREAREL-FKDMHTNGYLPDLCTYSVLLEGFCKQGYLGKAFRLFRAMQGTYLK 473

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
            +   Y I+ID +C+S  L+ A++ + ++       D  +Y  +I GLC+ G + EA+  
Sbjct: 474 PNLVMYTILIDSMCKSGNLNHARKLFSELFVHGLQPDVQIYTTIINGLCKEGLLDEALEA 533

Query: 444 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVT 493
             ++ + G  PN   YNV+I G  +   +  A Q++ EMR  G   D  T
Sbjct: 534 FRKMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQLIGEMRDKGFVADEGT 583



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 119/497 (23%), Positives = 233/497 (46%), Gaps = 8/497 (1%)

Query: 2   DQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEM-DVAYKVFDEMRHCGV 60
           D       + +A   F  M  R  +P ++ +  L+    R  +  D    +  +M   G+
Sbjct: 63  DASSSFRNIDDALASFNHMLHRKPLPCIIQFNKLLSAIVRMRQYYDAVISLSKQMELAGL 122

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN+ T ++L+      + V+    ++ K+ +       L      F  L++ LC+ G  
Sbjct: 123 SPNTCTLNILINCFCLMQHVDLGFSVLAKVIKL-----GLQPTIITFTTLINGLCKAGEF 177

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +   + +DM       + +    +I+ LC+ G    A+ ++  M + G  P +V+Y+++
Sbjct: 178 AQALELFDDMVARGCQPDVYTYTTIINGLCKMGETAAAAGLIKKMGEVGCQPDVVTYSTL 237

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +  LCK      A  +       G  P+  +Y  L++GLC  S  ++A  +L  M S   
Sbjct: 238 IDSLCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWKEASAMLNEMTSLNI 297

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           +      ++ +   C   N  E   VL  M +   +P+VIT N++++G+     + EA K
Sbjct: 298 MPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLMHGYSLQMEVVEARK 357

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           + + M+  + C PD  +++ +I G   V RI EA   L+  M  +G +P  V+Y  ++  
Sbjct: 358 LFDVMIT-RGCKPDVFSYSILINGYCMVKRIDEA-KQLFNEMIHQGLTPNTVSYTTLIHA 415

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
             +L ++ EA+E+F  M   G + D  TY+++++G C+   L +A R +  +       +
Sbjct: 416 FCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGKAFRLFRAMQGTYLKPN 475

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
             +Y  +I  +C+SG ++ A     EL   G+ P++  Y  +I+G CK  +  EA +  R
Sbjct: 476 LVMYTILIDSMCKSGNLNHARKLFSELFVHGLQPDVQIYTTIINGLCKEGLLDEALEAFR 535

Query: 481 EMRKNGLNPDAVTWRIL 497
           +M ++G  P+  ++ ++
Sbjct: 536 KMEEDGCPPNEFSYNVI 552



 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 105/451 (23%), Positives = 203/451 (45%), Gaps = 42/451 (9%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC      +A +LF DM +RG  P+V +YTT+I+G C+ GE   A  +  +M   G 
Sbjct: 168 INGLCKAGEFAQALELFDDMVARGCQPDVYTYTTIINGLCKMGETAAAAGLIKKMGEVGC 227

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TYS L+  + + R V  A      ++  MK  + +S    ++ +L+  LC     
Sbjct: 228 QPDVVTYSTLIDSLCKDRLVNEA----LDIFSYMK-AKGISPTVVSYTSLIQGLCSFSRW 282

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E   +  +M     + +      +ID  C+ G    A  V+  M + G+ P++++YNS+
Sbjct: 283 KEASAMLNEMTSLNIMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSL 342

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +HG       + A +L +  I  G  P   +Y +L+ G C    +++A+++   M+ +  
Sbjct: 343 MHGYSLQMEVVEARKLFDVMITRGCKPDVFSYSILINGYCMVKRIDEAKQLFNEMIHQG- 401

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                               P+ ++  T+I+ FC++G++ EA +
Sbjct: 402 ----------------------------------LTPNTVSYTTLIHAFCQLGKLREARE 427

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +  DM    +  PD  T++ ++ G    G + +A   L++ M      P +V Y  ++  
Sbjct: 428 LFKDMHTNGY-LPDLCTYSVLLEGFCKQGYLGKAFR-LFRAMQGTYLKPNLVMYTILIDS 485

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           + +   +  A+++F+ +   G+  D   Y  +I+GLC+   LDEA   +  +       +
Sbjct: 486 MCKSGNLNHARKLFSELFVHGLQPDVQIYTTIINGLCKEGLLDEALEAFRKMEEDGCPPN 545

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 451
            + Y  +I+G  +      AV  + E+ D G
Sbjct: 546 EFSYNVIIRGFLQHKDESRAVQLIGEMRDKG 576



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 97/347 (27%), Positives = 162/347 (46%), Gaps = 7/347 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    V EA  +F  MK++G  P VVSYT+LI G C       A  + +EM    +
Sbjct: 238 IDSLCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWKEASAMLNEMTSLNI 297

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P+ +T+S+L+    +  +V  A  ++  + E   E   ++ N     +L+     +  V
Sbjct: 298 MPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVITYN-----SLMHGYSLQMEV 352

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E  ++ + M       + F+   +I+  C   R   A ++   M  +GLTP+ VSY ++
Sbjct: 353 VEARKLFDVMITRGCKPDVFSYSILINGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTTL 412

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +H  C+ G    A +L ++    GYLP   TY VL+EG C +  L KA ++ + M     
Sbjct: 413 IHAFCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGKAFRLFRAMQGTYL 472

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                +  I + ++C   N      +   +     QPDV    T+ING CK G ++EAL+
Sbjct: 473 KPNLVMYTILIDSMCKSGNLNHARKLFSELFVHGLQPDVQIYTTIINGLCKEGLLDEALE 532

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGY 347
               M     C P+  ++  II G L       A+ L+ + M  +G+
Sbjct: 533 AFRKMEEDG-CPPNEFSYNVIIRGFLQHKDESRAVQLIGE-MRDKGF 577



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/250 (24%), Positives = 115/250 (46%), Gaps = 1/250 (0%)

Query: 257 IKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAV 316
            +N  + L     ML  +  P +I  N +++   +M +  +A+  L+  +     +P+  
Sbjct: 68  FRNIDDALASFNHMLHRKPLPCIIQFNKLLSAIVRMRQYYDAVISLSKQMELAGLSPNTC 127

Query: 317 TFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNC 376
           T   +I     +  +    ++L +V+ + G  P I+T+  ++ GL +     +A E+F+ 
Sbjct: 128 TLNILINCFCLMQHVDLGFSVLAKVI-KLGLQPTIITFTTLINGLCKAGEFAQALELFDD 186

Query: 377 MLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGK 436
           M+  G   D  TY  +I+GLC+  +   A      +       D   Y+ +I  LC+   
Sbjct: 187 MVARGCQPDVYTYTTIINGLCKMGETAAAAGLIKKMGEVGCQPDVVTYSTLIDSLCKDRL 246

Query: 437 IHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRI 496
           ++EA+     +   G++P +V Y  +I G C  S  +EA  +L EM    + PD VT+ +
Sbjct: 247 VNEALDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWKEASAMLNEMTSLNIMPDIVTFSL 306

Query: 497 LDKLHGNRGN 506
           L  +    GN
Sbjct: 307 LIDIFCKEGN 316


>gi|449519270|ref|XP_004166658.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g19440, chloroplastic-like [Cucumis sativus]
          Length = 799

 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 124/481 (25%), Positives = 248/481 (51%), Gaps = 9/481 (1%)

Query: 18  FDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRT 77
           F + S G  P+V S+T +I+  C+ G+M+ A ++F +M   G+ PN +TY+ ++ G+ + 
Sbjct: 209 FRVMSEGACPDVFSFTNVINALCKGGKMENAIELFMKMEKLGISPNVVTYNCIINGLCQN 268

Query: 78  RDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVN 137
             ++ A    F+L E+M  +  +  N   +  L++ L +  + ++V  I ++M       
Sbjct: 269 GRLDNA----FELKEKMTVK-GVQPNLKTYGALINGLIKLNFFDKVNHILDEMIGAGFNP 323

Query: 138 EEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLL 197
                 ++ID  C+ G   GA ++  VM  + +TP+ V+  S++ G CK      A   L
Sbjct: 324 NVVVFNNLIDGYCKMGNIEGALKIKDVMISKNITPTSVTLYSLMQGFCKSDQIEHAENAL 383

Query: 198 EEGIQFGY-LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCL 256
           EE +  G  +  ++ Y V V  LC +     A +  + MLS+       +  + +  LC 
Sbjct: 384 EEILSSGLSIHPDNCYSV-VHWLCKKFRYHSAFRFTKMMLSRNFRPSDLLLTMLVCGLCK 442

Query: 257 IKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAV 316
                E   +   +L+       +T N +I+G C  G++ EA +++ +M+  +    D +
Sbjct: 443 DGKHLEATELWFRLLEKGSPASKVTSNALIHGLCGAGKLPEASRIVKEMLE-RGLPMDRI 501

Query: 317 TFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNC 376
           T+  +I G  N G+++    L  + M +RG  P I TYN +LRGL  + ++++A ++++ 
Sbjct: 502 TYNALILGFCNEGKVEGCFRL-REEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDE 560

Query: 377 MLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGK 436
               G++++  TY I+++G C++N++++ +  +++++      ++ VY  +IK  C++G 
Sbjct: 561 FKASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKMELNSIVYNIIIKAHCQNGN 620

Query: 437 IHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRI 496
           +  A+  L  +   G+ PN   Y+ +I G C + +  +A  ++ EMRK G  P+ V +  
Sbjct: 621 VAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTA 680

Query: 497 L 497
           L
Sbjct: 681 L 681



 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 133/506 (26%), Positives = 249/506 (49%), Gaps = 17/506 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ L  L+   + + +  +M   G  PNVV +  LI GYC+ G ++ A K+ D M    +
Sbjct: 297 INGLIKLNFFDKVNHILDEMIGAGFNPNVVVFNNLIDGYCKMGNIEGALKIKDVMISKNI 356

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEE---EDLSVNNAAFANLVDSLCRE 117
            P S+T   L++G  ++  +E A        E   EE     LS++     ++V  LC++
Sbjct: 357 TPTSVTLYSLMQGFCKSDQIEHA--------ENALEEILSSGLSIHPDNCYSVVHWLCKK 408

Query: 118 GYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
              +  FR  + M        +     ++  LC+ G++  A+ + + + ++G   S V+ 
Sbjct: 409 FRYHSAFRFTKMMLSRNFRPSDLLLTMLVCGLCKDGKHLEATELWFRLLEKGSPASKVTS 468

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
           N+++HGLC  G    A ++++E ++ G      TY  L+ G C E  +E   ++ + M  
Sbjct: 469 NALIHGLCGAGKLPEASRIVKEMLERGLPMDRITYNALILGFCNEGKVEGCFRLREEMTK 528

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
           +         N  LR LC +    + + +      +    ++ T   ++ G+CK  RIE+
Sbjct: 529 RGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIED 588

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
              + N++++ K    +++ +  II      G +  AL LL + M  +G  P   TY+++
Sbjct: 589 VENLFNELLSKKM-ELNSIVYNIIIKAHCQNGNVAAALQLL-ENMKSKGILPNCATYSSL 646

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 417
           + G+  +  VE+AK + + M   G V +   Y  +I G C+  Q+D A+  W +++   N
Sbjct: 647 IHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMI-SFN 705

Query: 418 IHDN-YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAY 476
           IH N + Y  MI G C+ G + +A + L ++ +SG+ P++V YNV+ +G CK +    A+
Sbjct: 706 IHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIVPDVVTYNVLTNGFCKANDMDNAF 765

Query: 477 QILREMRKNGLNPDAVTWRILDKLHG 502
           ++  +M   GL  D +T+  L  +HG
Sbjct: 766 KVCDQMATEGLPVDEITYTTL--VHG 789



 Score =  195 bits (495), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 128/506 (25%), Positives = 237/506 (46%), Gaps = 7/506 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   ++  A +LF  M+  G  PNVV+Y  +I+G C+ G +D A+++ ++M   GV
Sbjct: 227 INALCKGGKMENAIELFMKMEKLGISPNVVTYNCIINGLCQNGRLDNAFELKEKMTVKGV 286

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN  TY  L+ G+++    ++ N ++ ++          + N   F NL+D  C+ G +
Sbjct: 287 QPNLKTYGALINGLIKLNFFDKVNHILDEMIG-----AGFNPNVVVFNNLIDGYCKMGNI 341

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
               +I + M              ++   C+S +   A   +  +   GL+    +  S+
Sbjct: 342 EGALKIKDVMISKNITPTSVTLYSLMQGFCKSDQIEHAENALEEILSSGLSIHPDNCYSV 401

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           VH LCK      A++  +  +   + PS+    +LV GLC +    +A ++   +L K  
Sbjct: 402 VHWLCKKFRYHSAFRFTKMMLSRNFRPSDLLLTMLVCGLCKDGKHLEATELWFRLLEKGS 461

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                  N  +  LC      E   ++  ML+     D IT N +I GFC  G++E   +
Sbjct: 462 PASKVTSNALIHGLCGAGKLPEASRIVKEMLERGLPMDRITYNALILGFCNEGKVEGCFR 521

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +  +M   +   PD  T+  ++ GL NVG++ +A+ L +      G    I TY  ++ G
Sbjct: 522 LREEMTK-RGIQPDIYTYNFLLRGLCNVGKLDDAIKL-WDEFKASGLISNIHTYGIMMEG 579

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
             +  R+E+ + +FN +L   +  +S  Y I+I   C++  +  A +  +++     + +
Sbjct: 580 YCKANRIEDVENLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPN 639

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              Y+++I G+C  G + +A H + E+   G  PN+VCY  +I G CKL     A     
Sbjct: 640 CATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWL 699

Query: 481 EMRKNGLNPDAVTWRILDKLHGNRGN 506
           EM    ++P+  T+ ++   +   GN
Sbjct: 700 EMISFNIHPNKFTYTVMIDGYCKLGN 725



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 91/357 (25%), Positives = 163/357 (45%), Gaps = 3/357 (0%)

Query: 141 ACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEG 200
            C   + SL ++        V  VM + G  P + S+ ++++ LCK G    A +L  + 
Sbjct: 188 TCNFXLSSLVKANEFEKCCEVFRVMSE-GACPDVFSFTNVINALCKGGKMENAIELFMKM 246

Query: 201 IQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNP 260
            + G  P+  TY  ++ GLC    L+ A ++ + M  K      +     +  L  +   
Sbjct: 247 EKLGISPNVVTYNCIINGLCQNGRLDNAFELKEKMTVKGVQPNLKTYGALINGLIKLNFF 306

Query: 261 TELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTT 320
            ++ ++L  M+     P+V+  N +I+G+CKMG IE ALK+  D++  K   P +VT  +
Sbjct: 307 DKVNHILDEMIGAGFNPNVVVFNNLIDGYCKMGNIEGALKI-KDVMISKNITPTSVTLYS 365

Query: 321 IIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI 380
           ++ G     +I+ A N L +++   G S       +V+  L +  R   A      ML  
Sbjct: 366 LMQGFCKSDQIEHAENALEEIL-SSGLSIHPDNCYSVVHWLCKKFRYHSAFRFTKMMLSR 424

Query: 381 GVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEA 440
                     +++ GLC+  +  EA   W  ++   +        A+I GLC +GK+ EA
Sbjct: 425 NFRPSDLLLTMLVCGLCKDGKHLEATELWFRLLEKGSPASKVTSNALIHGLCGAGKLPEA 484

Query: 441 VHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
              + E+++ G+  + + YN +I G C        +++  EM K G+ PD  T+  L
Sbjct: 485 SRIVKEMLERGLPMDRITYNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNFL 541


>gi|8778650|gb|AAF79658.1|AC025416_32 F5O11.4 [Arabidopsis thaliana]
          Length = 975

 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 132/487 (27%), Positives = 239/487 (49%), Gaps = 7/487 (1%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M+ +G   N+ + + +I+ +CR  ++ +A+    ++   G  PN++T+S L+ G+     
Sbjct: 212 MELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGR 271

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
           V  A  L+ ++ E   + + +++N      LV+ LC  G   E   + + M +       
Sbjct: 272 VSEALELVDRMVEMGHKPDLITINT-----LVNGLCLSGKEAEAMLLIDKMVEYGCQPNA 326

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
              G +++ +C+SG+   A  ++  M +R +    V Y+ I+ GLCKHG    A+ L  E
Sbjct: 327 VTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNE 386

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
               G   +  TY +L+ G C     +   K+L+ M+ +K        ++ + +      
Sbjct: 387 MEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGK 446

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
             E   +   M+     PD IT  ++I+GFCK   +++A +++ D++  K C P+  TF 
Sbjct: 447 LREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMV-DLMVSKGCDPNIRTFN 505

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
            +I G     RI + L L ++ M  RG     VTYN +++G   L ++  AKE+F  M+ 
Sbjct: 506 ILINGYCKANRIDDGLEL-FRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVS 564

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
             V  +  TY I++DGLC++ + ++A   ++ I       D  +Y  +I G+C + K+ +
Sbjct: 565 RKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDD 624

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
           A      L   GV P +  YN++I G CK     EA  + R+M ++G  PD  T+ IL +
Sbjct: 625 AWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIR 684

Query: 500 LHGNRGN 506
            H   G+
Sbjct: 685 AHLGDGD 691



 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 133/510 (26%), Positives = 242/510 (47%), Gaps = 43/510 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   RV EA +L   M   GH P++++  TL++G C +G+   A  + D+M   G 
Sbjct: 263 INGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGC 322

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN++TY  ++  + ++     A  L+ K+     EE ++ ++   ++ ++D LC+ G +
Sbjct: 323 QPNAVTYGPVLNVMCKSGQTALAMELLRKM-----EERNIKLDAVKYSIIIDGLCKHGSL 377

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +  F +  +M              +I   C +GR    ++++  M KR + P++V+++ +
Sbjct: 378 DNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVL 437

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +    K G    A +L +E I  G  P   TY  L++G C E+ L+KA +++  M+SK  
Sbjct: 438 IDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSK-- 495

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                             C P++ T N +ING+CK  RI++ L+
Sbjct: 496 ---------------------------------GCDPNIRTFNILINGYCKANRIDDGLE 522

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +   M      A D VT+ T+I G   +G++  A   L+Q M  R   P IVTY  +L G
Sbjct: 523 LFRKMSLRGVVA-DTVTYNTLIQGFCELGKLNVAKE-LFQEMVSRKVPPNIVTYKILLDG 580

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L      E+A E+F  +    +  D   Y I+I G+C ++++D+A   +  +        
Sbjct: 581 LCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPG 640

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              Y  MI GLC+ G + EA     ++ + G  P+   YN++I          ++ +++ 
Sbjct: 641 VKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIE 700

Query: 481 EMRKNGLNPDAVTWR-ILDKLHGNRGNDFG 509
           E+++ G + DA T + ++D L  ++ N F 
Sbjct: 701 ELKRCGFSVDASTIKMVIDMLSDDKANYFS 730



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 99/440 (22%), Positives = 201/440 (45%), Gaps = 18/440 (4%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ +C   +   A +L   M+ R    + V Y+ +I G C+ G +D A+ +F+EM   G+
Sbjct: 333 LNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGI 392

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             N +TY++L+ G       +    L+  + +R      ++ N   F+ L+DS  +EG +
Sbjct: 393 TTNIITYNILIGGFCNAGRWDDGAKLLRDMIKR-----KINPNVVTFSVLIDSFVKEGKL 447

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E   + ++M       +      +ID  C+      A+++V +M  +G  P++ ++N +
Sbjct: 448 REAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNIL 507

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++G CK        +L  +    G +    TY  L++G C    L  A+++ Q M+S+K 
Sbjct: 508 INGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKV 567

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                   I L  LC      + L +   + +++ + D+   N +I+G C   ++++A  
Sbjct: 568 PPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWD 627

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +   +   K   P   T+  +I GL   G + EA  LL++ M + G++P   TYN ++R 
Sbjct: 628 LFCSLPL-KGVKPGVKTYNIMIGGLCKKGPLSEA-ELLFRKMEEDGHAPDGWTYNILIRA 685

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCES--------NQLDEAKRFWDDI 412
                   ++ ++   +   G   D++T  +VID L +         +   ++  FW+  
Sbjct: 686 HLGDGDATKSVKLIEELKRCGFSVDASTIKMVIDMLSDDKANYFSKYHNCSKSTSFWNQ- 744

Query: 413 VWPSNIHDNYVYAAMIKGLC 432
             P    D++ +  +++  C
Sbjct: 745 --PEKPSDSWNWKCLLRLRC 762



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 107/220 (48%), Gaps = 5/220 (2%)

Query: 294 RIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVT 353
           + ++A+ +  DM+  +   P  + F+ +   +    +    L L  Q M  +G +  + T
Sbjct: 166 KADDAIDLFRDMIHSR-PLPTVIDFSRLFSAIAKTKQYDLVLALCKQ-MELKGIAHNLYT 223

Query: 354 YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413
            + ++    R R++  A      ++ +G   ++ T++ +I+GLC   ++ EA    D +V
Sbjct: 224 LSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMV 283

Query: 414 WPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKR 473
              +  D      ++ GLC SGK  EA+  + ++V+ G  PN V Y  V++  CK     
Sbjct: 284 EMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTA 343

Query: 474 EAYQILREMRKNGLNPDAVTWR-ILDKL--HGNRGNDFGL 510
            A ++LR+M +  +  DAV +  I+D L  HG+  N F L
Sbjct: 344 LAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNL 383


>gi|83744088|gb|ABC42330.1| PPR protein [Oryza sativa Indica Group]
          Length = 791

 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 140/515 (27%), Positives = 248/515 (48%), Gaps = 42/515 (8%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           +A+  + +M  RG +P+VV+Y ++I   C+   MD A +V + M   GV+P+ +TY+ ++
Sbjct: 214 KAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSIL 273

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP 131
            G   +   + A   + K+       + +  +   ++ L+D LC+ G   E  +I + M 
Sbjct: 274 HGYCSSGQPKEAIGFLKKM-----RSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMT 328

Query: 132 ---------------QGKSVNEEFACGH-MIDSLCRSG---------------RNHG--- 157
                          QG +        H ++D + R+G                N G   
Sbjct: 329 KRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYANQGKVD 388

Query: 158 -ASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLV 216
            A  V   MR++GL P+ V+Y +++  LCK G    A    E+ I  G  P    Y  L+
Sbjct: 389 QAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLI 448

Query: 217 EGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQ 276
            GLC  +  E+A +++  ML +     T   N  + + C      E   +   M++   +
Sbjct: 449 HGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVK 508

Query: 277 PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALN 336
           P+VIT NT+ING+C  G+++EA+K+L+ MV+     P+ VT++T+I G   + R+++AL 
Sbjct: 509 PNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGL-KPNTVTYSTLINGYCKISRMEDAL- 566

Query: 337 LLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 396
           +L++ M   G SP I+TYN +L+GLF+ RR   AKE++  +   G   + +TY I++ GL
Sbjct: 567 VLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGL 626

Query: 397 CESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNI 456
           C++   D+A + + ++       +   +  MI  L + G+  EA         +G+ PN 
Sbjct: 627 CKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNY 686

Query: 457 VCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 491
             Y ++ +      +  E  Q+   M  NG   D+
Sbjct: 687 WTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDS 721



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 126/502 (25%), Positives = 235/502 (46%), Gaps = 47/502 (9%)

Query: 4   LCGLSRVGEAHKLFF---DMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           LC  +R  EA +L     D +  G  P+VVSYTT+I+G+ + G+ D AY  + EM   G+
Sbjct: 168 LCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGI 227

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           LP+ +TY+ ++  + + + +++A                + V N    N V         
Sbjct: 228 LPDVVTYNSIIAALCKAQAMDKA----------------MEVLNTMVKNGV--------- 262

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                    MP   + N       ++   C SG+   A   +  MR  G+ P +V+Y+ +
Sbjct: 263 ---------MPDCMTYNS------ILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLL 307

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +  LCK+G CM A ++ +   + G  P   TY  L++G   +  L +   +L  M+    
Sbjct: 308 MDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGI 367

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                + +I + A        + + V   M Q    P+ +T   VI   CK GR+E+A+ 
Sbjct: 368 HPDHYVFSILICAYANQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAML 427

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
               M+  +  +P  + + ++I GL    + + A  L+ + M  RG     + +N+++  
Sbjct: 428 YFEQMI-DEGLSPGNIVYNSLIHGLCTCNKWERAEELILE-MLDRGICLNTIFFNSIIDS 485

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
             +  RV E++++F  M+ IGV  +  TY  +I+G C + ++DEA +    +V      +
Sbjct: 486 HCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPN 545

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              Y+ +I G C+  ++ +A+    E+  SGV+P+I+ YN+++ G  +      A ++  
Sbjct: 546 TVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYV 605

Query: 481 EMRKNGLNPDAVTWRILDKLHG 502
            + ++G   +  T+ I+  LHG
Sbjct: 606 RITESGTQIELSTYNII--LHG 625



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 123/493 (24%), Positives = 223/493 (45%), Gaps = 15/493 (3%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCG---VLPNSLTYS 68
           +A  +F ++  RG   ++      +    R      A   ++ M   G   V P+  TY 
Sbjct: 33  DARHVFDELLRRGRGASIYGLNRALADVARDSPA-AAVSRYNRMARAGADEVTPDLCTYG 91

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIA- 127
           +L+    R     R ++    L   +K+     V+  AF  L+  LC +   ++   I  
Sbjct: 92  ILIGCCCRA---GRLDLGFAALGNVIKK--GFRVDAIAFTPLLKGLCADKRTSDAMDIVL 146

Query: 128 EDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVM---RKRGLTPSLVSYNSIVHGL 184
             M +   +   F+   ++  LC   R+  A  ++++M   R  G  P +VSY ++++G 
Sbjct: 147 RRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGF 206

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
            K G   +AY    E +  G LP   TY  ++  LC    ++KA +VL  M+    +   
Sbjct: 207 FKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDC 266

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
              N  L   C    P E +  L  M     +PDV+T + +++  CK GR  EA K+ + 
Sbjct: 267 MTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDS 326

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
           M   +   P+  T+ T++ G    G + E   LL  +M + G  P    ++ ++      
Sbjct: 327 MTK-RGLKPEITTYGTLLQGYATKGALVEMHGLL-DLMVRNGIHPDHYVFSILICAYANQ 384

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY 424
            +V++A  VF+ M   G+  ++ TY  VI  LC+S ++++A  +++ ++       N VY
Sbjct: 385 GKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVY 444

Query: 425 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484
            ++I GLC   K   A   + E++D G+  N + +N +ID  CK     E+ ++   M +
Sbjct: 445 NSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVR 504

Query: 485 NGLNPDAVTWRIL 497
            G+ P+ +T+  L
Sbjct: 505 IGVKPNVITYNTL 517



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 116/470 (24%), Positives = 215/470 (45%), Gaps = 56/470 (11%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           MD LC   R  EA K+F  M  RG  P + +Y TL+ GY   G +   + + D M   G+
Sbjct: 308 MDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGI 367

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+   +S+L+        V++A ++  K+      ++ L+ N   +  ++  LC+ G V
Sbjct: 368 HPDHYVFSILICAYANQGKVDQAMLVFSKM-----RQQGLNPNAVTYGAVIGILCKSGRV 422

Query: 121 NEVFRIAEDMPQGKSVNEEFACGH-----MIDSLCRSGRNHGASRVVYVMRKRGLTPSLV 175
            +     E M     ++E  + G+     +I  LC   +   A  ++  M  RG+  + +
Sbjct: 423 EDAMLYFEQM-----IDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTI 477

Query: 176 SYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM 235
            +NSI+   CK G  + + +L E  ++ G  P+  TY  L+ G C    +++A K+L  M
Sbjct: 478 FFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGM 537

Query: 236 LSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 295
           +S                                      +P+ +T +T+ING+CK+ R+
Sbjct: 538 VS-----------------------------------VGLKPNTVTYSTLINGYCKISRM 562

Query: 296 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN 355
           E+AL +  +M +    +PD +T+  I+ GL    R   A   LY  + + G    + TYN
Sbjct: 563 EDALVLFKEMESSGV-SPDIITYNIILQGLFQTRRTAAAKE-LYVRITESGTQIELSTYN 620

Query: 356 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP 415
            +L GL + +  ++A ++F  +  + +  ++ T+ I+ID L +  + DEAK  +  + + 
Sbjct: 621 IILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLF--VAFS 678

Query: 416 SN--IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463
           SN  + + + Y  M + +   G + E       + D+G T +    N ++
Sbjct: 679 SNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIV 728



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 105/433 (24%), Positives = 196/433 (45%), Gaps = 7/433 (1%)

Query: 77  TRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSV 136
            RD   A V  +    R   +E ++ +   +  L+   CR G ++  F    ++ +    
Sbjct: 61  ARDSPAAAVSRYNRMARAGADE-VTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFR 119

Query: 137 NEEFACGHMIDSLCRSGRNHGASRVVYV-MRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQ 195
            +  A   ++  LC   R   A  +V   M + G  P++ SYN ++ GLC       A +
Sbjct: 120 VDAIAFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALE 179

Query: 196 LLE---EGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLR 252
           LL    +    G  P   +Y  ++ G   E D +KA      ML +  +      N  + 
Sbjct: 180 LLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIA 239

Query: 253 ALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCA 312
           ALC  +   + + VL  M++    PD +T N++++G+C  G+ +EA+  L  M +     
Sbjct: 240 ALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGV-E 298

Query: 313 PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKE 372
           PD VT++ ++  L   GR  EA  + +  M +RG  P I TY  +L+G      + E   
Sbjct: 299 PDVVTYSLLMDYLCKNGRCMEARKI-FDSMTKRGLKPEITTYGTLLQGYATKGALVEMHG 357

Query: 373 VFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLC 432
           + + M+  G+  D   ++I+I       ++D+A   +  +       +   Y A+I  LC
Sbjct: 358 LLDLMVRNGIHPDHYVFSILICAYANQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILC 417

Query: 433 RSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAV 492
           +SG++ +A+ +  +++D G++P  + YN +I G C  +    A +++ EM   G+  + +
Sbjct: 418 KSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTI 477

Query: 493 TWRILDKLHGNRG 505
            +  +   H   G
Sbjct: 478 FFNSIIDSHCKEG 490


>gi|359485815|ref|XP_003633341.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Vitis vinifera]
          Length = 822

 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 138/482 (28%), Positives = 238/482 (49%), Gaps = 11/482 (2%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           +V EA  +   +      P+V +YT+LI G+CR   +D+A+ VFD M   G  PNS+TYS
Sbjct: 213 KVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYS 272

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
            L+ G+     V+ A      + E M E+  +      +   + +LC   +  E   +  
Sbjct: 273 TLINGLCNEGRVDEA----LDMLEEMIEK-GIEPTVYTYTLPITALCAIEHEEEAIELVA 327

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
            M +            +I  L R G+   A  + + M K GL P+ V+YN++++ LC  G
Sbjct: 328 RMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGG 387

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
               A ++       G L +  TY  +++GLC   D+EKA  + + ML    +      N
Sbjct: 388 RFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYN 447

Query: 249 IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 308
             +       N      +L  M +  C+PD  T N +++GF K G++E A     +MV  
Sbjct: 448 TLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVEC 507

Query: 309 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE 368
               P+ V++T +I G    G++  AL+LL + M + G +P + +YNAV+ GL +  R  
Sbjct: 508 GL-NPNPVSYTALIDGHSKDGKVDIALSLLKR-MEEMGCNPNVESYNAVINGLSKENRFS 565

Query: 369 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI 428
           EA+++ + M+  G++ +  TY  +IDGLC + +   A + + D+     + + Y Y+++I
Sbjct: 566 EAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLI 625

Query: 429 KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLN 488
            GLC+ GK  EA      + + G  P +  Y+ ++ G C+     EA Q++++M++ G  
Sbjct: 626 YGLCQEGKADEA----ERMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFC 681

Query: 489 PD 490
           PD
Sbjct: 682 PD 683



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 138/507 (27%), Positives = 224/507 (44%), Gaps = 31/507 (6%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   RV EA  +  +M  +G  P V +YT  I   C     + A ++   M+  G 
Sbjct: 275 INGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGC 334

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN  TY+ L+ G+ R   +E A  L  K+      +E L  N   +  L++ LC  G  
Sbjct: 335 RPNVQTYTALISGLSRLGKLEVAIGLYHKML-----KEGLVPNTVTYNALINELCVGGRF 389

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +   +I   M    S+        +I  LC  G    A  +   M K G  P++V+YN++
Sbjct: 390 STALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTL 449

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM----L 236
           ++G    G    A +LL+   + G  P E TY  LV G      LE A    Q M    L
Sbjct: 450 INGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGL 509

Query: 237 SKKDVDRTRICNIYLR------ALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFC 290
           +   V  T + + + +      AL L+K           M +  C P+V + N VING  
Sbjct: 510 NPNPVSYTALIDGHSKDGKVDIALSLLKR----------MEEMGCNPNVESYNAVINGLS 559

Query: 291 KMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG 350
           K  R  EA K+ + MV      P+ +T+TT+I GL   GR Q A  + +  M +R   P 
Sbjct: 560 KENRFSEAEKICDKMVEQGLL-PNVITYTTLIDGLCRNGRTQFAFKIFHD-MEKRKCLPN 617

Query: 351 IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD 410
           + TY++++ GL +  + +EA+     M  IG      TY+ ++ GLC   +  EA++   
Sbjct: 618 LYTYSSLIYGLCQEGKADEAER----MSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVK 673

Query: 411 DIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLS 470
           D+       D  +Y +++   C++ ++  A+   + +   G   ++  Y  +I   CK  
Sbjct: 674 DMKERGFCPDREIYYSLLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIYRALICALCKAG 733

Query: 471 MKREAYQILREMRKNGLNPDAVTWRIL 497
              EA  +   M +   N D + W +L
Sbjct: 734 QVEEAQALFDNMLEKEWNADEIVWTVL 760



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 126/496 (25%), Positives = 232/496 (46%), Gaps = 11/496 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC +    EA +L   MK RG  PNV +YT LI G  R G+++VA  ++ +M   G++PN
Sbjct: 313 LCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPN 372

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           ++TY+ L+  +        A     K++  M+    L+ N   +  ++  LC  G + + 
Sbjct: 373 TVTYNALINELCVGGRFSTA----LKIFHWMEGHGSLA-NTQTYNEIIKGLCLGGDIEKA 427

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             + E M +   +        +I+     G  + A+R++ +M++ G  P   +YN +V G
Sbjct: 428 MVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSG 487

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
             K G    A    +E ++ G  P+  +Y  L++G   +  ++ A  +L+ M        
Sbjct: 488 FSKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPN 547

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               N  +  L      +E   +   M++    P+VIT  T+I+G C+ GR + A K+ +
Sbjct: 548 VESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFH 607

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           DM   K C P+  T++++I+GL   G+  EA     + M + G  P + TY+ ++ GL R
Sbjct: 608 DMEKRK-CLPNLYTYSSLIYGLCQEGKADEA-----ERMSEIGCEPTLDTYSTLVSGLCR 661

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
             R  EA+++   M   G   D   Y  ++   C++ ++D A + +  I          +
Sbjct: 662 KGRFYEAEQLVKDMKERGFCPDREIYYSLLIAHCKNLEVDHALKIFHSIEAKGFQLHLSI 721

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y A+I  LC++G++ EA      +++     + + + V++DG  K        ++L  M 
Sbjct: 722 YRALICALCKAGQVEEAQALFDNMLEKEWNADEIVWTVLVDGLLKEGELDLCMKLLHIME 781

Query: 484 KNGLNPDAVTWRILDK 499
                P+  T+ IL +
Sbjct: 782 SKNFTPNIQTYVILGR 797



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 111/462 (24%), Positives = 213/462 (46%), Gaps = 46/462 (9%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +++LC   R   A K+F  M+  G + N  +Y  +I G C  G+++ A  +F++M   G 
Sbjct: 380 INELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGP 439

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           LP  +TY+ L+ G L   +V  A  L+  + E   E ++ + N      LV    + G +
Sbjct: 440 LPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYN-----ELVSGFSKWGKL 494

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                  ++M +        +   +ID   + G+   A  ++  M + G  P++ SYN++
Sbjct: 495 ESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAV 554

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++GL K      A ++ ++ ++ G LP+  TY  L++GLC     + A K+   M  +K 
Sbjct: 555 INGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRK- 613

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                             C P++ T +++I G C+ G+ +EA  
Sbjct: 614 ----------------------------------CLPNLYTYSSLIYGLCQEGKADEA-- 637

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
              + ++   C P   T++T++ GL   GR  EA  L+ + M +RG+ P    Y ++L  
Sbjct: 638 ---ERMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLV-KDMKERGFCPDREIYYSLLIA 693

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
             +   V+ A ++F+ +   G     + Y  +I  LC++ Q++EA+  +D+++      D
Sbjct: 694 HCKNLEVDHALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLEKEWNAD 753

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVV 462
             V+  ++ GL + G++   +  L+ +     TPNI  Y ++
Sbjct: 754 EIVWTVLVDGLLKEGELDLCMKLLHIMESKNFTPNIQTYVIL 795



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 113/408 (27%), Positives = 190/408 (46%), Gaps = 3/408 (0%)

Query: 106 AFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVM 165
            F  L++ L ++G V E   I   + Q     + F    +I   CR+     A  V   M
Sbjct: 200 TFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRM 259

Query: 166 RKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDL 225
            K G  P+ V+Y+++++GLC  G    A  +LEE I+ G  P+ +TY + +  LC     
Sbjct: 260 VKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHE 319

Query: 226 EKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTV 285
           E+A +++  M  +      +     +  L  +      + +   ML+    P+ +T N +
Sbjct: 320 EEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNAL 379

Query: 286 INGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQR 345
           IN  C  GR   ALK+ + M  G     +  T+  II GL   G I++A+ +L++ M + 
Sbjct: 380 INELCVGGRFSTALKIFHWM-EGHGSLANTQTYNEIIKGLCLGGDIEKAM-VLFEKMLKM 437

Query: 346 GYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA 405
           G  P +VTYN ++ G      V  A  + + M   G   D  TY  ++ G  +  +L+ A
Sbjct: 438 GPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESA 497

Query: 406 KRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDG 465
             ++ ++V      +   Y A+I G  + GK+  A+  L  + + G  PN+  YN VI+G
Sbjct: 498 SFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVING 557

Query: 466 ACKLSMKREAYQILREMRKNGLNPDAVTWRIL-DKLHGNRGNDFGLRI 512
             K +   EA +I  +M + GL P+ +T+  L D L  N    F  +I
Sbjct: 558 LSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKI 605



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 100/358 (27%), Positives = 172/358 (48%), Gaps = 37/358 (10%)

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
           ++C  ++  L +     GA  +   M   G+ PSL+++N++++ L K G    A  +L +
Sbjct: 164 YSCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQ 223

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
             Q+   P   TY  L+ G C   +L+ A  V          DR                
Sbjct: 224 IFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVF---------DR---------------- 258

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
                     M++  C P+ +T +T+ING C  GR++EAL +L +M+  K   P   T+T
Sbjct: 259 ----------MVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIE-KGIEPTVYTYT 307

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
             I  L  +   +EA+ L+ + M +RG  P + TY A++ GL RL ++E A  +++ ML 
Sbjct: 308 LPITALCAIEHEEEAIELVAR-MKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLK 366

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
            G+V ++ TY  +I+ LC   +   A + +  +    ++ +   Y  +IKGLC  G I +
Sbjct: 367 EGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEK 426

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           A+    +++  G  P +V YN +I+G         A ++L  M++NG  PD  T+  L
Sbjct: 427 AMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNEL 484



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 97/371 (26%), Positives = 171/371 (46%), Gaps = 49/371 (13%)

Query: 6   GLSRVG--EAHKLFF-DMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           G S+ G  E+   +F +M   G  PN VSYT LI G+ + G++D+A  +   M   G  P
Sbjct: 487 GFSKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNP 546

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           N  +Y+ ++ G+ +      A     K+ ++M E+  L  N   +  L+D LCR G    
Sbjct: 547 NVESYNAVINGLSKENRFSEAE----KICDKMVEQ-GLLPNVITYTTLIDGLCRNGRTQF 601

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
            F+I  DM + K +   +    +I  LC+ G+   A R    M + G  P+L +Y+++V 
Sbjct: 602 AFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAER----MSEIGCEPTLDTYSTLVS 657

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           GLC+ G    A QL+++  + G+ P    Y  L+   C   +++ A K+   + +K    
Sbjct: 658 GLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLIAHCKNLEVDHALKIFHSIEAKG--- 714

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
                                     F L             +I   CK G++EEA  + 
Sbjct: 715 --------------------------FQLHLS------IYRALICALCKAGQVEEAQALF 742

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
           ++M+  ++ A D + +T ++ GLL  G +   + LL+ +M  + ++P I TY  + R L 
Sbjct: 743 DNMLEKEWNA-DEIVWTVLVDGLLKEGELDLCMKLLH-IMESKNFTPNIQTYVILGRELS 800

Query: 363 RLRRVEEAKEV 373
           R+ +  E++ +
Sbjct: 801 RIGKSIESEPL 811



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 103/210 (49%), Gaps = 4/210 (1%)

Query: 291 KMGRIEEALKVLNDM---VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGY 347
           K  R EE ++ + D    ++G        +  T++  L     ++ A NL Y+ M   G 
Sbjct: 136 KACRNEEEIRRVADFLNEISGMGFGFSLYSCNTLLIQLAKFEMVEGARNL-YKQMLNSGI 194

Query: 348 SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKR 407
            P ++T+N ++  L +  +V EA+ + + +    +  D  TY  +I G C +  LD A  
Sbjct: 195 QPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFG 254

Query: 408 FWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGAC 467
            +D +V      ++  Y+ +I GLC  G++ EA+  L E+++ G+ P +  Y + I   C
Sbjct: 255 VFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALC 314

Query: 468 KLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            +  + EA +++  M+K G  P+  T+  L
Sbjct: 315 AIEHEEEAIELVARMKKRGCRPNVQTYTAL 344


>gi|356532718|ref|XP_003534918.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 529

 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 128/471 (27%), Positives = 235/471 (49%), Gaps = 13/471 (2%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M+ +G   N V+   LI+ +C  G+M  ++ V  ++   G  P+++T + L++G+    +
Sbjct: 36  MEVKGIRANFVTLNILINCFCHLGQMAFSFSVLGKILKLGYQPDTITLNTLMKGLCLKGE 95

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVN---EVFRIAEDMPQGKSV 136
           V+++     K+       +   +++ ++  L++ LC+ G      ++ R+ ED     +V
Sbjct: 96  VKKSLHFHDKVVA-----QGFQMDHVSYGTLLNGLCKIGETRCAVKLLRMIEDRSTRPNV 150

Query: 137 NEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQL 196
                   +ID LC+    + A  +   M  RG+ P  ++Y ++++G C  G  M A+ L
Sbjct: 151 ---VMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPDAITYTTLIYGFCLLGQLMGAFSL 207

Query: 197 LEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCL 256
           L+E I     P  + Y +L+  LC E ++++A+ +L  M  +         +  +   CL
Sbjct: 208 LDEMILKNINPGVYIYNILINALCKEGNVKEAKNLLAVMTKEGIKPGVVTYSTLMDGYCL 267

Query: 257 IKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAV 316
           +        +   M+Q    P+V + N +ING CK  R++EA+ +L +M+  K   PD V
Sbjct: 268 VGEVQNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLH-KNMVPDTV 326

Query: 317 TFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNC 376
           T+ ++I GL   GRI  ALNL+ + M  RG    +VTY ++L  L + + +++A  +F  
Sbjct: 327 TYNSLIDGLCKSGRITSALNLMNE-MHHRGQPADVVTYTSLLDALCKNQNLDKATALFMK 385

Query: 377 MLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGK 436
           M   G+     TY  +IDGLC+  +L  A+  +  ++      D + Y  MI GLC+ G 
Sbjct: 386 MKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCCIDVWTYTVMISGLCKEGM 445

Query: 437 IHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
             EA+    ++ D+G  PN V + ++I    +     +A ++L EM   GL
Sbjct: 446 FDEALAIKSKMEDNGCIPNAVTFEIIIRSLFEKDENDKAEKLLHEMIAKGL 496



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 117/449 (26%), Positives = 211/449 (46%), Gaps = 7/449 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C L ++  +  +   +   G+ P+ ++  TL+ G C  GE+  +    D++   G   +
Sbjct: 55  FCHLGQMAFSFSVLGKILKLGYQPDTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMD 114

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            ++Y  L+ G+ +  +   A  L+     RM E+     N   +  ++D LC++  VNE 
Sbjct: 115 HVSYGTLLNGLCKIGETRCAVKLL-----RMIEDRSTRPNVVMYNTIIDGLCKDKLVNEA 169

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           + +  +M       +      +I   C  G+  GA  ++  M  + + P +  YN +++ 
Sbjct: 170 YDLYSEMDARGIFPDAITYTTLIYGFCLLGQLMGAFSLLDEMILKNINPGVYIYNILINA 229

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LCK G    A  LL    + G  P   TY  L++G C   +++ A+++   M+       
Sbjct: 230 LCKEGNVKEAKNLLAVMTKEGIKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVNPN 289

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               NI +  LC  K   E +N+L  ML     PD +T N++I+G CK GRI  AL ++N
Sbjct: 290 VYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMN 349

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           +M   +    D VT+T+++  L     + +A   L+  M +RG  P + TY A++ GL +
Sbjct: 350 EM-HHRGQPADVVTYTSLLDALCKNQNLDKA-TALFMKMKERGIQPTMYTYTALIDGLCK 407

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
             R++ A+E+F  +L  G   D  TY ++I GLC+    DEA      +     I +   
Sbjct: 408 GGRLKNAQELFQHLLVKGCCIDVWTYTVMISGLCKEGMFDEALAIKSKMEDNGCIPNAVT 467

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGV 452
           +  +I+ L    +  +A   L+E++  G+
Sbjct: 468 FEIIIRSLFEKDENDKAEKLLHEMIAKGL 496



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 98/353 (27%), Positives = 181/353 (51%), Gaps = 2/353 (0%)

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
           +I+  C  G+   +  V+  + K G  P  ++ N+++ GLC  G   ++    ++ +  G
Sbjct: 51  LINCFCHLGQMAFSFSVLGKILKLGYQPDTITLNTLMKGLCLKGEVKKSLHFHDKVVAQG 110

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL 264
           +     +Y  L+ GLC   +   A K+L+ +  +       + N  +  LC  K   E  
Sbjct: 111 FQMDHVSYGTLLNGLCKIGETRCAVKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAY 170

Query: 265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 324
           ++   M      PD IT  T+I GFC +G++  A  +L++M+  K   P    +  +I  
Sbjct: 171 DLYSEMDARGIFPDAITYTTLIYGFCLLGQLMGAFSLLDEMIL-KNINPGVYIYNILINA 229

Query: 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 384
           L   G ++EA NLL  VM + G  PG+VTY+ ++ G   +  V+ AK++F+ M+ +GV  
Sbjct: 230 LCKEGNVKEAKNLL-AVMTKEGIKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVNP 288

Query: 385 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFL 444
           +  +Y I+I+GLC+  ++DEA     +++  + + D   Y ++I GLC+SG+I  A++ +
Sbjct: 289 NVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLM 348

Query: 445 YELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            E+   G   ++V Y  ++D  CK     +A  +  +M++ G+ P   T+  L
Sbjct: 349 NEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTMYTYTAL 401



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 111/413 (26%), Positives = 197/413 (47%), Gaps = 14/413 (3%)

Query: 4   LCGLSRVGE---AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           L GL ++GE   A KL   ++ R   PNVV Y T+I G C+   ++ AY ++ EM   G+
Sbjct: 122 LNGLCKIGETRCAVKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGI 181

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+++TY+ L+ G      +  A    F L + M   ++++     +  L+++LC+EG V
Sbjct: 182 FPDAITYTTLIYGFCLLGQLMGA----FSLLDEMI-LKNINPGVYIYNILINALCKEGNV 236

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E   +   M +            ++D  C  G    A ++ + M + G+ P++ SYN +
Sbjct: 237 KEAKNLLAVMTKEGIKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNIM 296

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++GLCK      A  LL E +    +P   TY  L++GLC    +  A  ++  M  +  
Sbjct: 297 INGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQ 356

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                     L ALC  +N  +   + + M +   QP + T   +I+G CK GR++ A +
Sbjct: 357 PADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQE 416

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +   ++  K C  D  T+T +I GL   G   EAL +  + M   G  P  VT+  ++R 
Sbjct: 417 LFQHLLV-KGCCIDVWTYTVMISGLCKEGMFDEALAIKSK-MEDNGCIPNAVTFEIIIRS 474

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413
           LF     ++A+++ + M+  G++      A V       N+ D+A++   +++
Sbjct: 475 LFEKDENDKAEKLLHEMIAKGLLVLDFKVADVF----VQNENDKAEKLLHEMI 523



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 125/254 (49%), Gaps = 5/254 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC    V EA  L   M   G  P VV+Y+TL+ GYC  GE+  A ++F  M   GV
Sbjct: 227 INALCKEGNVKEAKNLLAVMTKEGIKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGV 286

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN  +Y++++ G+ + + V+ A  L+ ++  +     ++  +   + +L+D LC+ G +
Sbjct: 287 NPNVYSYNIMINGLCKCKRVDEAMNLLREMLHK-----NMVPDTVTYNSLIDGLCKSGRI 341

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                +  +M       +      ++D+LC++     A+ +   M++RG+ P++ +Y ++
Sbjct: 342 TSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTMYTYTAL 401

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GLCK G    A +L +  +  G      TY V++ GLC E   ++A  +   M     
Sbjct: 402 IDGLCKGGRLKNAQELFQHLLVKGCCIDVWTYTVMISGLCKEGMFDEALAIKSKMEDNGC 461

Query: 241 VDRTRICNIYLRAL 254
           +       I +R+L
Sbjct: 462 IPNAVTFEIIIRSL 475



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 109/237 (45%), Gaps = 2/237 (0%)

Query: 270 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG 329
           ML  +  P +I  N ++    KM +   A+ +   M   K    + VT   +I    ++G
Sbjct: 1   MLLVRHTPPIIEFNKILGSLAKMKQYLTAISLSKQMEV-KGIRANFVTLNILINCFCHLG 59

Query: 330 RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTY 389
           ++  + ++L +++ + GY P  +T N +++GL     V+++    + ++  G   D  +Y
Sbjct: 60  QMAFSFSVLGKIL-KLGYQPDTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDHVSY 118

Query: 390 AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449
             +++GLC+  +   A +    I   S   +  +Y  +I GLC+   ++EA     E+  
Sbjct: 119 GTLLNGLCKIGETRCAVKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDA 178

Query: 450 SGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
            G+ P+ + Y  +I G C L     A+ +L EM    +NP    + IL       GN
Sbjct: 179 RGIFPDAITYTTLIYGFCLLGQLMGAFSLLDEMILKNINPGVYIYNILINALCKEGN 235


>gi|22128712|gb|AAM92824.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
           Group]
          Length = 878

 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 140/515 (27%), Positives = 246/515 (47%), Gaps = 42/515 (8%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           +A+  + +M  RG +P+VV+Y+++I   C+   MD A +V + M   GV+P+ +TY+ ++
Sbjct: 219 KAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSIL 278

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP 131
            G   +   + A   + K+       + +  N   +++L++ LC+ G   E  +I + M 
Sbjct: 279 HGYCSSGQPKEAIGTLKKM-----RSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMT 333

Query: 132 ---------------QGKSVNEEFACGH-MIDSLCRSG-------------------RNH 156
                          QG +        H ++D + R+G                   +  
Sbjct: 334 KRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVD 393

Query: 157 GASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLV 216
            A  V   MR+ GL P++V Y +++  LCK G    A    E+ I  G  P+   Y  L+
Sbjct: 394 QAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLI 453

Query: 217 EGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQ 276
            GLC     +KA +++  ML +     T   N  + + C      E   +   M++   +
Sbjct: 454 HGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVK 513

Query: 277 PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALN 336
           PD+IT NT+I+G C  G+++EA K+L  MV+     PD VT+ T+I G   V R+ +AL 
Sbjct: 514 PDIITYNTLIDGCCLAGKMDEATKLLASMVSVGV-KPDIVTYGTLINGYCRVSRMDDAL- 571

Query: 337 LLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 396
            L++ M   G SP I+TYN +L+GLF  RR   AKE++  +   G   + +TY I++ GL
Sbjct: 572 ALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGL 631

Query: 397 CESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNI 456
           C++N  DEA R + ++       +   +  MI  L + G++ EA         +G+ P++
Sbjct: 632 CKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDV 691

Query: 457 VCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 491
             Y+++ +   +     E   +   M +NG + D+
Sbjct: 692 RTYSLMAENLIEQGSLEELDDLFLSMEENGCSADS 726



 Score =  191 bits (486), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 132/515 (25%), Positives = 244/515 (47%), Gaps = 50/515 (9%)

Query: 4   LCGLSRVGEAHKLFF---DMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           LC  +R  EA +L     D +  G  P+VVSY T+++G+ + G+ D AY  + EM   G+
Sbjct: 173 LCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGI 232

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           LP+ +TYS ++  + + + +++A  ++  + +     + ++ N+     ++   C  G  
Sbjct: 233 LPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNS-----ILHGYCSSGQP 287

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E     + M              +++ LC++GR+  A ++   M KRGL P + +Y ++
Sbjct: 288 KEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTL 347

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G    G  +  + LL+  ++ G  P  H + +L+   C  +   K  KV Q ML    
Sbjct: 348 LQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILI---CAYA---KQEKVDQAML---- 397

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                    V   M Q    P+V+   TVI+  CK G +++A+ 
Sbjct: 398 -------------------------VFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAML 432

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
               M+  +   P+ + +T++I GL    +  +A  L+ +++  RG     + +N+++  
Sbjct: 433 YFEQMI-DEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEML-DRGICLNTIFFNSIIDS 490

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
             +  RV E++++F+ M+ IGV  D  TY  +IDG C + ++DEA +    +V      D
Sbjct: 491 HCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPD 550

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              Y  +I G CR  ++ +A+    E+V SGV+PNI+ YN+++ G         A ++  
Sbjct: 551 IVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYV 610

Query: 481 EMRKNGLNPDAVTWRILDKLHG---NRGNDFGLRI 512
            + K+G   +  T+ I+  LHG   N   D  LR+
Sbjct: 611 SITKSGTQLELSTYNII--LHGLCKNNLTDEALRM 643



 Score =  171 bits (434), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 121/497 (24%), Positives = 234/497 (47%), Gaps = 11/497 (2%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYC---RTGE-MDVAYKVFDEMRHCGV 60
           C   R+        ++  +G   + +++T L+ G C   RT + MD+   V   M   G 
Sbjct: 103 CRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDI---VLRRMTELGC 159

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P+  +Y+ L++G+      + A  L+  + +         V   ++  +++   +EG  
Sbjct: 160 IPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDV--VSYNTVLNGFFKEGDS 217

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           ++ +    +M     + +      +I +LC++     A  V+  M K G+ P  ++YNSI
Sbjct: 218 DKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSI 277

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +HG C  G    A   L++    G  P+  TY  L+  LC      +ARK+   M  +  
Sbjct: 278 LHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGL 337

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                     L+         E+  +L  M++   QPD    N +I  + K  ++++A+ 
Sbjct: 338 EPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAML 397

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           V + M       P+ V + T+I  L   G + +A+ L ++ M   G +P I+ Y +++ G
Sbjct: 398 VFSKMRQHGL-NPNVVCYGTVIDVLCKSGSVDDAM-LYFEQMIDEGLTPNIIVYTSLIHG 455

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L    + ++A+E+   ML  G+  ++  +  +ID  C+  ++ E+++ +D +V      D
Sbjct: 456 LCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPD 515

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              Y  +I G C +GK+ EA   L  +V  GV P+IV Y  +I+G C++S   +A  + +
Sbjct: 516 IITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFK 575

Query: 481 EMRKNGLNPDAVTWRIL 497
           EM  +G++P+ +T+ I+
Sbjct: 576 EMVSSGVSPNIITYNII 592



 Score =  171 bits (433), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 121/475 (25%), Positives = 217/475 (45%), Gaps = 44/475 (9%)

Query: 26  VPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANV 85
            P V +Y  LI   CR G +D+ +     +   G   +++T++ L++G+   +   R + 
Sbjct: 89  TPTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADK---RTSD 145

Query: 86  LMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHM 145
            M  +  RM E                     G + +V                F+  ++
Sbjct: 146 AMDIVLRRMTE--------------------LGCIPDV----------------FSYNNL 169

Query: 146 IDSLCRSGRNHGASRVVYVM---RKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQ 202
           +  LC   R+  A  ++++M   R  G  P +VSYN++++G  K G   +AY    E + 
Sbjct: 170 LKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLD 229

Query: 203 FGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTE 262
            G LP   TY  ++  LC    ++KA +VL  M+    +      N  L   C    P E
Sbjct: 230 RGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKE 289

Query: 263 LLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTII 322
            +  L  M     +P+V+T ++++N  CK GR  EA K+ + M   +   PD  T+ T++
Sbjct: 290 AIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTK-RGLEPDIATYRTLL 348

Query: 323 FGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGV 382
            G    G + E ++ L  +M + G  P    +N ++    +  +V++A  VF+ M   G+
Sbjct: 349 QGYATKGALVE-MHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGL 407

Query: 383 VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVH 442
             +   Y  VID LC+S  +D+A  +++ ++      +  VY ++I GLC   K  +A  
Sbjct: 408 NPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEE 467

Query: 443 FLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            + E++D G+  N + +N +ID  CK     E+ ++   M + G+ PD +T+  L
Sbjct: 468 LILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTL 522



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 109/463 (23%), Positives = 207/463 (44%), Gaps = 42/463 (9%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M+ LC   R  EA K+F  M  RG  P++ +Y TL+ GY   G +   + + D M   G+
Sbjct: 313 MNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGI 372

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+   +++L+    +   V++A ++  K+      +  L+ N   +  ++D LC+ G V
Sbjct: 373 QPDHHVFNILICAYAKQEKVDQAMLVFSKM-----RQHGLNPNVVCYGTVIDVLCKSGSV 427

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           ++     E M              +I  LC   +   A  ++  M  RG+  + + +NSI
Sbjct: 428 DDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSI 487

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +   CK G  + + +L +  ++ G  P   TY  L++G C    +++A K+L  M+S   
Sbjct: 488 IDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVS--- 544

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                              +PD++T  T+ING+C++ R+++AL 
Sbjct: 545 --------------------------------VGVKPDIVTYGTLINGYCRVSRMDDALA 572

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +  +MV+    +P+ +T+  I+ GL +  R   A   LY  + + G    + TYN +L G
Sbjct: 573 LFKEMVSSGV-SPNIITYNIILQGLFHTRRTAAAKE-LYVSITKSGTQLELSTYNIILHG 630

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L +    +EA  +F  +    +  ++ T+ I+I  L +  ++DEAK  +        + D
Sbjct: 631 LCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPD 690

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463
              Y+ M + L   G + E       + ++G + +    N ++
Sbjct: 691 VRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIV 733



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 121/230 (52%), Gaps = 2/230 (0%)

Query: 278 DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNL 337
           D IT   ++ G C   R  +A+ ++   +    C PD  ++  ++ GL +  R QEAL L
Sbjct: 126 DAITFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALEL 185

Query: 338 LYQVMPQRG--YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG 395
           L+ +   RG    P +V+YN VL G F+    ++A   ++ ML  G++ D  TY+ +I  
Sbjct: 186 LHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAA 245

Query: 396 LCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN 455
           LC++  +D+A    + +V    + D   Y +++ G C SG+  EA+  L ++   GV PN
Sbjct: 246 LCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPN 305

Query: 456 IVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
           +V Y+ +++  CK     EA +I   M K GL PD  T+R L + +  +G
Sbjct: 306 VVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKG 355



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 86/334 (25%), Positives = 150/334 (44%), Gaps = 45/334 (13%)

Query: 170 LTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKAR 229
           +TP++ +Y  ++   C+ G     +  L   ++ G+     T+  L++GLC +     A 
Sbjct: 88  VTPTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAM 147

Query: 230 KVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGF 289
            +                                  VL  M +  C PDV + N ++ G 
Sbjct: 148 DI----------------------------------VLRRMTELGCIPDVFSYNNLLKGL 173

Query: 290 CKMGRIEEALKVLNDMVA--GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGY 347
           C   R +EAL++L+ M    G    PD V++ T++ G    G   +A +  Y  M  RG 
Sbjct: 174 CDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSDKAYS-TYHEMLDRGI 232

Query: 348 SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA-- 405
            P +VTY++++  L + + +++A EV N M+  GV+ D  TY  ++ G C S Q  EA  
Sbjct: 233 LPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIG 292

Query: 406 --KRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463
             K+   D V P+ +     Y++++  LC++G+  EA      +   G+ P+I  Y  ++
Sbjct: 293 TLKKMRSDGVEPNVV----TYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLL 348

Query: 464 DGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            G        E + +L  M +NG+ PD   + IL
Sbjct: 349 QGYATKGALVEMHALLDLMVRNGIQPDHHVFNIL 382



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 107/239 (44%), Gaps = 6/239 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C   ++ EA KL   M S G  P++V+Y TLI+GYCR   MD A  +F EM   GV
Sbjct: 523 IDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGV 582

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +TY+++++G+  TR    A  L   + +   + E LS  N     ++  LC+    
Sbjct: 583 SPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLE-LSTYNI----ILHGLCKNNLT 637

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E  R+ +++       E      MI +L + GR   A  +       GL P + +Y+ +
Sbjct: 638 DEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLM 697

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
              L + G       L     + G          +V  L    D+ +A   L FM+ +K
Sbjct: 698 AENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKLLQRGDITRAGTYL-FMIDEK 755



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 68/298 (22%), Positives = 120/298 (40%), Gaps = 40/298 (13%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C   RV E+ KLF  M   G  P++++Y TLI G C  G+MD A K+   M   GV
Sbjct: 488 IDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGV 547

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TY  L+ G  R   ++ A      L++ M       V++    N++         
Sbjct: 548 KPDIVTYGTLINGYCRVSRMDDA----LALFKEM-------VSSGVSPNII--------- 587

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
              + I                  ++  L  + R   A  +   + K G    L +YN I
Sbjct: 588 --TYNI------------------ILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNII 627

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +HGLCK+     A ++ +            T+ +++  L     +++A+ +     +   
Sbjct: 628 LHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGL 687

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
           V   R  ++    L    +  EL ++ + M +  C  D   LN+++    + G I  A
Sbjct: 688 VPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKLLQRGDITRA 745


>gi|255572227|ref|XP_002527053.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533615|gb|EEF35353.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 677

 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 133/525 (25%), Positives = 250/525 (47%), Gaps = 44/525 (8%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           ++ E    F  ++ +G + ++ +  +L+ G  + G +D+A++V++E+   G+  N  T +
Sbjct: 130 KLNEGTDTFKILRRKGFLVSINACNSLLGGLVKMGWVDLAWEVYNEIARSGIELNVYTLN 189

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
           ++V  + +   ++     +  +     E++ +  +   +  L+++ CREG + E F +  
Sbjct: 190 IMVNALCKDHKIDDVKPFLIDM-----EQKGIFADIVTYNTLINAYCREGLLGEAFEVMN 244

Query: 129 DMPQGKSVNEE-FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKH 187
            M  GK +    F    +I+ LC+ GR   A  V   M   GL+P   +YN+++   C++
Sbjct: 245 SM-SGKGLKPTLFTYNAVINGLCKKGRYVRAKGVFNEMLSIGLSPDTTTYNTLLVESCRN 303

Query: 188 GGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC 247
              + A  +  + +  G  P   ++  L+        L++A    + M +   V    I 
Sbjct: 304 NNFLEAKDIFSDMLHRGVSPDLISFSSLIGVSSRNGHLDQALMYFRDMKTSGLVPDNVIY 363

Query: 248 NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA 307
            I +   C     +E L +   ML+  C  DV+  NT++NG CK   + +A  + ++MV 
Sbjct: 364 TILINGYCRNGMMSEALEIRDKMLEQGCALDVVAYNTILNGLCKKKLLADANALFDEMVE 423

Query: 308 GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRV 367
            +   PD  TFTT+I G    G + +AL+L + +M Q+   P IVTYN ++ G  +   +
Sbjct: 424 -RGVVPDFCTFTTLIHGHCKEGNMGKALSL-FGIMTQKNIKPDIVTYNILIDGFCKTTEM 481

Query: 368 EEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAM 427
           E+A E++N M+   +  +  +YAI+++G C    + EA R WD+++             +
Sbjct: 482 EKANELWNEMISRKIFPNHISYAILVNGYCNLGFVSEAFRLWDEMIRKGIKPTLVTCNTV 541

Query: 428 IKGLCRSGKIHEAVHFLYELVDSGV----------------------------------- 452
           IKG CRSG + +A  FL +++  GV                                   
Sbjct: 542 IKGYCRSGDLSKADEFLGKMISEGVGPDSITYNTLINGFVKGEYMDKAFFLINKMETKGL 601

Query: 453 TPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            P++V YNV+++G C+    +EA  ILR+M + G++PD  T+  L
Sbjct: 602 QPDVVTYNVILNGFCRQGRMQEAELILRKMIERGIDPDRSTYTTL 646



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 125/490 (25%), Positives = 230/490 (46%), Gaps = 7/490 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   ++ +      DM+ +G   ++V+Y TLI+ YCR G +  A++V + M   G+
Sbjct: 192 VNALCKDHKIDDVKPFLIDMEQKGIFADIVTYNTLINAYCREGLLGEAFEVMNSMSGKGL 251

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P   TY+ ++ G+ +     RA  +  ++         LS +   +  L+   CR    
Sbjct: 252 KPTLFTYNAVINGLCKKGRYVRAKGVFNEMLSI-----GLSPDTTTYNTLLVESCRNNNF 306

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E   I  DM       +  +   +I    R+G    A      M+  GL P  V Y  +
Sbjct: 307 LEAKDIFSDMLHRGVSPDLISFSSLIGVSSRNGHLDQALMYFRDMKTSGLVPDNVIYTIL 366

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++G C++G    A ++ ++ ++ G       Y  ++ GLC +  L  A  +   M+ +  
Sbjct: 367 INGYCRNGMMSEALEIRDKMLEQGCALDVVAYNTILNGLCKKKLLADANALFDEMVERGV 426

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           V         +   C   N  + L++   M Q   +PD++T N +I+GFCK   +E+A +
Sbjct: 427 VPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNILIDGFCKTTEMEKANE 486

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           + N+M++ K   P+ +++  ++ G  N+G + EA   L+  M ++G  P +VT N V++G
Sbjct: 487 LWNEMISRKI-FPNHISYAILVNGYCNLGFVSEAFR-LWDEMIRKGIKPTLVTCNTVIKG 544

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
             R   + +A E    M+  GV  DS TY  +I+G  +   +D+A    + +       D
Sbjct: 545 YCRSGDLSKADEFLGKMISEGVGPDSITYNTLINGFVKGEYMDKAFFLINKMETKGLQPD 604

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              Y  ++ G CR G++ EA   L ++++ G+ P+   Y  +I+G       +EA++   
Sbjct: 605 VVTYNVILNGFCRQGRMQEAELILRKMIERGIDPDRSTYTTLINGYVSQDNLKEAFRFHD 664

Query: 481 EMRKNGLNPD 490
           EM + G  PD
Sbjct: 665 EMLQRGFVPD 674



 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 114/421 (27%), Positives = 208/421 (49%), Gaps = 7/421 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   R   A  +F +M S G  P+  +Y TL+   CR      A  +F +M H GV
Sbjct: 262 INGLCKKGRYVRAKGVFNEMLSIGLSPDTTTYNTLLVESCRNNNFLEAKDIFSDMLHRGV 321

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +++S L+    R   +++A      ++ R  +   L  +N  +  L++  CR G +
Sbjct: 322 SPDLISFSSLIGVSSRNGHLDQA-----LMYFRDMKTSGLVPDNVIYTILINGYCRNGMM 376

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E   I + M +     +  A   +++ LC+      A+ +   M +RG+ P   ++ ++
Sbjct: 377 SEALEIRDKMLEQGCALDVVAYNTILNGLCKKKLLADANALFDEMVERGVVPDFCTFTTL 436

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +HG CK G   +A  L     Q    P   TY +L++G C  +++EKA ++   M+S+K 
Sbjct: 437 IHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNILIDGFCKTTEMEKANELWNEMISRKI 496

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                   I +   C +   +E   +   M++   +P ++T NTVI G+C+ G + +A +
Sbjct: 497 FPNHISYAILVNGYCNLGFVSEAFRLWDEMIRKGIKPTLVTCNTVIKGYCRSGDLSKADE 556

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
            L  M++ +   PD++T+ T+I G +  G   +    L   M  +G  P +VTYN +L G
Sbjct: 557 FLGKMIS-EGVGPDSITYNTLINGFVK-GEYMDKAFFLINKMETKGLQPDVVTYNVILNG 614

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
             R  R++EA+ +   M+  G+  D +TY  +I+G    + L EA RF D+++    + D
Sbjct: 615 FCRQGRMQEAELILRKMIERGIDPDRSTYTTLINGYVSQDNLKEAFRFHDEMLQRGFVPD 674

Query: 421 N 421
           +
Sbjct: 675 D 675



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 132/498 (26%), Positives = 237/498 (47%), Gaps = 21/498 (4%)

Query: 6   GLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSL 65
           G+SRV E  +    M S   V N+V +  LI  Y +  +++     F  +R  G L +  
Sbjct: 94  GVSRV-EIVESLISMSSTCGVDNLV-FDLLIRSYVQARKLNEGTDTFKILRRKGFLVSIN 151

Query: 66  TYSVLVRGVLRTRDVERANVLMFKLWERMKE--EEDLSVNNAAFANLVDSLCREGYVNEV 123
             + L+ G+++   V+ A       WE   E     + +N      +V++LC++  +++V
Sbjct: 152 ACNSLLGGLVKMGWVDLA-------WEVYNEIARSGIELNVYTLNIMVNALCKDHKIDDV 204

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
                DM Q     +      +I++ CR G    A  V+  M  +GL P+L +YN++++G
Sbjct: 205 KPFLIDMEQKGIFADIVTYNTLINAYCREGLLGEAFEVMNSMSGKGLKPTLFTYNAVING 264

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFML----SKK 239
           LCK G  +RA  +  E +  G  P   TY  L+   C  ++  +A+ +   ML    S  
Sbjct: 265 LCKKGRYVRAKGVFNEMLSIGLSPDTTTYNTLLVESCRNNNFLEAKDIFSDMLHRGVSPD 324

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
            +  + +  +  R   L     + L     M  +   PD +    +ING+C+ G + EAL
Sbjct: 325 LISFSSLIGVSSRNGHL----DQALMYFRDMKTSGLVPDNVIYTILINGYCRNGMMSEAL 380

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           ++ + M+  + CA D V + TI+ GL     + +A N L+  M +RG  P   T+  ++ 
Sbjct: 381 EIRDKMLE-QGCALDVVAYNTILNGLCKKKLLADA-NALFDEMVERGVVPDFCTFTTLIH 438

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
           G  +   + +A  +F  M    +  D  TY I+IDG C++ ++++A   W++++      
Sbjct: 439 GHCKEGNMGKALSLFGIMTQKNIKPDIVTYNILIDGFCKTTEMEKANELWNEMISRKIFP 498

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           ++  YA ++ G C  G + EA     E++  G+ P +V  N VI G C+     +A + L
Sbjct: 499 NHISYAILVNGYCNLGFVSEAFRLWDEMIRKGIKPTLVTCNTVIKGYCRSGDLSKADEFL 558

Query: 480 REMRKNGLNPDAVTWRIL 497
            +M   G+ PD++T+  L
Sbjct: 559 GKMISEGVGPDSITYNTL 576



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 95/362 (26%), Positives = 169/362 (46%), Gaps = 37/362 (10%)

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
           +I S  ++ + +  +    ++R++G   S+ + NS++ GL K G    A+++  E  + G
Sbjct: 121 LIRSYVQARKLNEGTDTFKILRRKGFLVSINACNSLLGGLVKMGWVDLAWEVYNEIARSG 180

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL 264
              + +T  ++V  LC +  ++  +  L                                
Sbjct: 181 IELNVYTLNIMVNALCKDHKIDDVKPFL-------------------------------- 208

Query: 265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 324
              + M Q     D++T NT+IN +C+ G + EA +V+N M +GK   P   T+  +I G
Sbjct: 209 ---IDMEQKGIFADIVTYNTLINAYCREGLLGEAFEVMNSM-SGKGLKPTLFTYNAVING 264

Query: 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 384
           L   GR   A  + +  M   G SP   TYN +L    R     EAK++F+ ML  GV  
Sbjct: 265 LCKKGRYVRAKGV-FNEMLSIGLSPDTTTYNTLLVESCRNNNFLEAKDIFSDMLHRGVSP 323

Query: 385 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFL 444
           D  +++ +I     +  LD+A  ++ D+     + DN +Y  +I G CR+G + EA+   
Sbjct: 324 DLISFSSLIGVSSRNGHLDQALMYFRDMKTSGLVPDNVIYTILINGYCRNGMMSEALEIR 383

Query: 445 YELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNR 504
            ++++ G   ++V YN +++G CK  +  +A  +  EM + G+ PD  T+  L   H   
Sbjct: 384 DKMLEQGCALDVVAYNTILNGLCKKKLLADANALFDEMVERGVVPDFCTFTTLIHGHCKE 443

Query: 505 GN 506
           GN
Sbjct: 444 GN 445


>gi|224103543|ref|XP_002313097.1| predicted protein [Populus trichocarpa]
 gi|222849505|gb|EEE87052.1| predicted protein [Populus trichocarpa]
          Length = 751

 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 138/515 (26%), Positives = 245/515 (47%), Gaps = 22/515 (4%)

Query: 13  AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVR 72
           A K++ +M + G   NV SY  LI G+C  G +++  + F+EM     LPN +TY+ ++ 
Sbjct: 187 AEKVYREMIASGVSLNVFSYNILIRGFCAAGNLEMGLRFFEEMERNRCLPNVVTYNTVIG 246

Query: 73  GVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQ 132
              + + ++ A    FKL   M   E L  N   +  +++ LCR G + E   +  +M +
Sbjct: 247 AYCKLKRIDEA----FKLLRSMG-LEGLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDR 301

Query: 133 GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMR 192
                +      +++  C+ G  H A  +   M + GL P +V+Y S+++ +CK G   R
Sbjct: 302 KGFAPDGVTYNTLVNGYCKVGNFHQALVLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNR 361

Query: 193 AYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLR 252
           A +  ++    G  P+  TY  L+ G   +  +++A ++   M+           N  L 
Sbjct: 362 AMEFFDQMHVRGLRPNGVTYTSLINGFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALLN 421

Query: 253 ALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCA 312
             C+     E + +L  M      PDV++ +T+I GFC+   ++ A ++  +MV  K  +
Sbjct: 422 GHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFCRYQELDRAFQMNAEMVE-KGVS 480

Query: 313 PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKE 372
           PDA+T++++I GL    R+ EA + L+Q M  +   P   TY +++ G  +   + EA  
Sbjct: 481 PDAITYSSLIQGLCEQRRLNEACD-LFQEMLNKSLLPDEFTYTSLINGYCKEGDLNEALN 539

Query: 373 VFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY-------- 424
           + + M+  G + D+ TY ++I+GL +  +  EAKR    + +  +I +   Y        
Sbjct: 540 LHDEMIKKGFLPDTVTYNVLINGLNKQARTREAKRLLLKLFYDESIPNGITYDTLIESCS 599

Query: 425 -------AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQ 477
                   A+IKG C  G ++EA      ++     PN   YNV+I G C+     +A++
Sbjct: 600 DIEFKSVVALIKGFCMKGLMNEADQVFESMIKRNQKPNEAVYNVIIHGHCRDGNVHKAHK 659

Query: 478 ILREMRKNGLNPDAVTWRILDKLHGNRGNDFGLRI 512
           + +EM   G  P  VT   L K   + G D  L +
Sbjct: 660 LYKEMVDFGFIPHTVTIIALVKALYSEGMDEQLNL 694



 Score =  199 bits (505), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 131/478 (27%), Positives = 240/478 (50%), Gaps = 43/478 (8%)

Query: 21  KSRGHVPNVVSYTTLIHGYCRTGEMDV-AYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           K  G +P V+SY  ++    R  +  + A KV+ EM   GV  N  +Y++L+RG     +
Sbjct: 159 KLNGFMPGVLSYNAILDSIVRCRKPVIFAEKVYREMIASGVSLNVFSYNILIRGFCAAGN 218

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
           +E    +  + +E M+    L  N   +  ++ + C+   ++E F++   M         
Sbjct: 219 LE----MGLRFFEEMERNRCLP-NVVTYNTVIGAYCKLKRIDEAFKLLRSMGLEGLEPNL 273

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
                +I+ LCR GR    S V+  M ++G  P  V+YN++V+G CK G   +A  L  E
Sbjct: 274 LTYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQALVLHSE 333

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
            ++ G  P   TY  L+  +C   +L +A +    M              ++R L     
Sbjct: 334 MLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQM--------------HVRGL----- 374

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
                           +P+ +T  ++INGF + G ++EA ++ ++M+   F  P  VT+ 
Sbjct: 375 ----------------RPNGVTYTSLINGFSQKGFMDEAYRIWDEMIRSGF-PPTIVTYN 417

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
            ++ G    GR++EA+ LL + M  +G SP +V+Y+ ++ G  R + ++ A ++   M+ 
Sbjct: 418 ALLNGHCVSGRMEEAIGLL-RGMEGKGLSPDVVSYSTIIAGFCRYQELDRAFQMNAEMVE 476

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
            GV  D+ TY+ +I GLCE  +L+EA   + +++  S + D + Y ++I G C+ G ++E
Sbjct: 477 KGVSPDAITYSSLIQGLCEQRRLNEACDLFQEMLNKSLLPDEFTYTSLINGYCKEGDLNE 536

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           A++   E++  G  P+ V YNV+I+G  K +  REA ++L ++  +   P+ +T+  L
Sbjct: 537 ALNLHDEMIKKGFLPDTVTYNVLINGLNKQARTREAKRLLLKLFYDESIPNGITYDTL 594



 Score =  194 bits (494), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 128/518 (24%), Positives = 246/518 (47%), Gaps = 22/518 (4%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C    +    + F +M+    +PNVV+Y T+I  YC+   +D A+K+   M   G+ PN
Sbjct: 213 FCAAGNLEMGLRFFEEMERNRCLPNVVTYNTVIGAYCKLKRIDEAFKLLRSMGLEGLEPN 272

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            LTY++++ G+ R   +E  + ++ ++     + +  + +   +  LV+  C+ G  ++ 
Sbjct: 273 LLTYNMVINGLCRVGRIEETSGVLAEM-----DRKGFAPDGVTYNTLVNGYCKVGNFHQA 327

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             +  +M +     +      +I+++C++G  + A      M  RGL P+ V+Y S+++G
Sbjct: 328 LVLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLING 387

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
             + G    AY++ +E I+ G+ P+  TY  L+ G C    +E+A  +L+ M  K     
Sbjct: 388 FSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPD 447

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               +  +   C  +       +   M++    PD IT +++I G C+  R+ EA  +  
Sbjct: 448 VVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQ 507

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           +M+  K   PD  T+T++I G    G + EALN L+  M ++G+ P  VTYN ++ GL +
Sbjct: 508 EML-NKSLLPDEFTYTSLINGYCKEGDLNEALN-LHDEMIKKGFLPDTVTYNVLINGLNK 565

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVID---------------GLCESNQLDEAKRF 408
             R  EAK +   +     + +  TY  +I+               G C    ++EA + 
Sbjct: 566 QARTREAKRLLLKLFYDESIPNGITYDTLIESCSDIEFKSVVALIKGFCMKGLMNEADQV 625

Query: 409 WDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACK 468
           ++ ++  +   +  VY  +I G CR G +H+A     E+VD G  P+ V    ++     
Sbjct: 626 FESMIKRNQKPNEAVYNVIIHGHCRDGNVHKAHKLYKEMVDFGFIPHTVTIIALVKALYS 685

Query: 469 LSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
             M  +   ++R++ ++    DA   + L +++   GN
Sbjct: 686 EGMDEQLNLVIRDILRSCKLSDAELSKALVQINHKEGN 723



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 94/354 (26%), Positives = 169/354 (47%), Gaps = 24/354 (6%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ +C    +  A + F  M  RG  PN V+YT+LI+G+ + G MD AY+++DEM   G 
Sbjct: 350 INTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQKGFMDEAYRIWDEMIRSGF 409

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P  +TY+ L+ G   +  +E A  L+     R  E + LS +  +++ ++   CR   +
Sbjct: 410 PPTIVTYNALLNGHCVSGRMEEAIGLL-----RGMEGKGLSPDVVSYSTIIAGFCRYQEL 464

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +  F++  +M +     +      +I  LC   R + A  +   M  + L P   +Y S+
Sbjct: 465 DRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQEMLNKSLLPDEFTYTSL 524

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVL-------- 232
           ++G CK G    A  L +E I+ G+LP   TY VL+ GL  ++   +A+++L        
Sbjct: 525 INGYCKEGDLNEALNLHDEMIKKGFLPDTVTYNVLINGLNKQARTREAKRLLLKLFYDES 584

Query: 233 --------QFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNT 284
                     + S  D++   +  + ++  C+     E   V   M++   +P+    N 
Sbjct: 585 IPNGITYDTLIESCSDIEFKSVVAL-IKGFCMKGLMNEADQVFESMIKRNQKPNEAVYNV 643

Query: 285 VINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLL 338
           +I+G C+ G + +A K+  +MV   F  P  VT   ++  L + G + E LNL+
Sbjct: 644 IIHGHCRDGNVHKAHKLYKEMVDFGFI-PHTVTIIALVKALYSEG-MDEQLNLV 695



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/328 (24%), Positives = 152/328 (46%), Gaps = 22/328 (6%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C   R+ EA  L   M+ +G  P+VVSY+T+I G+CR  E+D A+++  EM   GV P++
Sbjct: 424 CVSGRMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDA 483

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           +TYS L++G+   R +  A  L  ++  +      L  +   + +L++  C+EG +NE  
Sbjct: 484 ITYSSLIQGLCEQRRLNEACDLFQEMLNK-----SLLPDEFTYTSLINGYCKEGDLNEAL 538

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH-- 182
            + ++M +   + +      +I+ L +  R   A R++  +      P+ ++Y++++   
Sbjct: 539 NLHDEMIKKGFLPDTVTYNVLINGLNKQARTREAKRLLLKLFYDESIPNGITYDTLIESC 598

Query: 183 -------------GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKAR 229
                        G C  G    A Q+ E  I+    P+E  Y V++ G C + ++ KA 
Sbjct: 599 SDIEFKSVVALIKGFCMKGLMNEADQVFESMIKRNQKPNEAVYNVIIHGHCRDGNVHKAH 658

Query: 230 KVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQ-PDVITLNTVING 288
           K+ + M+    +  T      ++AL   +   E LN+++  +   C+  D      ++  
Sbjct: 659 KLYKEMVDFGFIPHTVTIIALVKAL-YSEGMDEQLNLVIRDILRSCKLSDAELSKALVQI 717

Query: 289 FCKMGRIEEALKVLNDMVAGKFCAPDAV 316
             K G I+    +L +M    F    A 
Sbjct: 718 NHKEGNIDAVFNLLTEMAKDGFLPSGAA 745


>gi|357499275|ref|XP_003619926.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494941|gb|AES76144.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 727

 Score =  202 bits (515), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 135/497 (27%), Positives = 247/497 (49%), Gaps = 11/497 (2%)

Query: 7   LSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLT 66
           L  V  +  +F  +  RG+  + V+  T++ G C  G +  A +  DE+ + G   N ++
Sbjct: 85  LGHVSFSFSIFGKILKRGYGLDTVALNTVLKGLCVNGGVLKALEFHDEIVNNGFSLNEVS 144

Query: 67  YSVLVRGVLRTRDVERANVLMFKLWERMKEEED---LSVNNAAFANLVDSLCREGYVNEV 123
           Y +L+ G+     V  A  L+  + +  ++E+D   +  N   ++ ++D LCR G+V+E 
Sbjct: 145 YGILINGLCENGRVNEAVNLLRMIEKEKEKEKDGFFVKGNVVMYSIVIDCLCRNGFVDEG 204

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           F    +M        EF  G +I  LC  G+      +V  M +RGL  S+  +  ++ G
Sbjct: 205 FEFYNEMMGNGVCPNEFTYGSLIRGLCGVGKFLEGFGLVDEMIRRGLDVSVYVFTVLIDG 264

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS---KKD 240
           LCK+G  + A ++ +E +  GY P+  T   L+ G C + +++ AR++   +     K+D
Sbjct: 265 LCKNGMLVEAREMFDEMVNRGYEPNIVTCTALMGGYCLKGNVDMARELFDAIGEWGFKRD 324

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           V      N+++   C +    + + V   M +    P+++T N++I+  CK G +  A +
Sbjct: 325 V---WTYNVFIHGYCKVGRVRDAVRVFDEMCREGVVPNIVTYNSLIDCLCKAGEVSGAWE 381

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           ++  M       PD VT   ++ GL    R+ +A+ LL+  + + G +P + +Y  ++ G
Sbjct: 382 IVKTMHRSGL-TPDIVTCCILLDGLCKSKRLDQAI-LLFNQLVESGLTPDVWSYTILIHG 439

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
               RR+ EA  +   M    +V    TY+ +IDGLC S ++  A R  +++     + D
Sbjct: 440 CCTSRRMGEAMNLLRDMHLKNLVPHIVTYSCLIDGLCRSGRISNAWRLLNEMHVKGPLPD 499

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              Y+ ++  L +   + EAV    +++  G+ P+++CY ++IDG CK     EA  + R
Sbjct: 500 TITYSILLDALWKKQHLDEAVFLFNQMIKRGLEPDVMCYTIMIDGYCKSERIDEAINLFR 559

Query: 481 EMRKNGLNPDAVTWRIL 497
           EM    L PD VT+ IL
Sbjct: 560 EMHMKNLVPDIVTYTIL 576



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 118/432 (27%), Positives = 204/432 (47%), Gaps = 7/432 (1%)

Query: 28  NVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLM 87
           NVV Y+ +I   CR G +D  ++ ++EM   GV PN  TY  L+RG+           L+
Sbjct: 184 NVVMYSIVIDCLCRNGFVDEGFEFYNEMMGNGVCPNEFTYGSLIRGLCGVGKFLEGFGLV 243

Query: 88  FKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMID 147
            ++  R      L V+   F  L+D LC+ G + E   + ++M           C  ++ 
Sbjct: 244 DEMIRR-----GLDVSVYVFTVLIDGLCKNGMLVEAREMFDEMVNRGYEPNIVTCTALMG 298

Query: 148 SLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLP 207
             C  G    A  +   + + G    + +YN  +HG CK G    A ++ +E  + G +P
Sbjct: 299 GYCLKGNVDMARELFDAIGEWGFKRDVWTYNVFIHGYCKVGRVRDAVRVFDEMCREGVVP 358

Query: 208 SEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVL 267
           +  TY  L++ LC   ++  A ++++ M           C I L  LC  K   + + + 
Sbjct: 359 NIVTYNSLIDCLCKAGEVSGAWEIVKTMHRSGLTPDIVTCCILLDGLCKSKRLDQAILLF 418

Query: 268 VFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLN 327
             ++++   PDV +   +I+G C   R+ EA+ +L DM   K   P  VT++ +I GL  
Sbjct: 419 NQLVESGLTPDVWSYTILIHGCCTSRRMGEAMNLLRDMHL-KNLVPHIVTYSCLIDGLCR 477

Query: 328 VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADST 387
            GRI  A  LL + M  +G  P  +TY+ +L  L++ + ++EA  +FN M+  G+  D  
Sbjct: 478 SGRISNAWRLLNE-MHVKGPLPDTITYSILLDALWKKQHLDEAVFLFNQMIKRGLEPDVM 536

Query: 388 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYEL 447
            Y I+IDG C+S ++DEA   + ++   + + D   Y  +   + +SG       F+  +
Sbjct: 537 CYTIMIDGYCKSERIDEAINLFREMHMKNLVPDIVTYTILFNAVFKSGSNSYEWKFVNVI 596

Query: 448 VDSGVTPNIVCY 459
            D    P ++ Y
Sbjct: 597 RDINPPPRVLKY 608



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 105/364 (28%), Positives = 177/364 (48%), Gaps = 19/364 (5%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    + EA ++F +M +RG+ PN+V+ T L+ GYC  G +D+A ++FD +   G 
Sbjct: 262 IDGLCKNGMLVEAREMFDEMVNRGYEPNIVTCTALMGGYCLKGNVDMARELFDAIGEWGF 321

Query: 61  LPNSLTYSVLVRG---VLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCRE 117
             +  TY+V + G   V R RD  R    M +        E +  N   + +L+D LC+ 
Sbjct: 322 KRDVWTYNVFIHGYCKVGRVRDAVRVFDEMCR--------EGVVPNIVTYNSLIDCLCKA 373

Query: 118 GYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
           G V+  + I + M +     +   C  ++D LC+S R   A  +   + + GLTP + SY
Sbjct: 374 GEVSGAWEIVKTMHRSGLTPDIVTCCILLDGLCKSKRLDQAILLFNQLVESGLTPDVWSY 433

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
             ++HG C       A  LL +      +P   TY  L++GLC    +  A ++L  M  
Sbjct: 434 TILIHGCCTSRRMGEAMNLLRDMHLKNLVPHIVTYSCLIDGLCRSGRISNAWRLLNEMHV 493

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
           K  +  T   +I L AL   ++  E + +   M++   +PDV+    +I+G+CK  RI+E
Sbjct: 494 KGPLPDTITYSILLDALWKKQHLDEAVFLFNQMIKRGLEPDVMCYTIMIDGYCKSERIDE 553

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQ---EALNLLYQVMPQRGYSPGIVTY 354
           A+ +  +M   K   PD VT+T +   +   G      + +N++  + P     P ++ Y
Sbjct: 554 AINLFREMHM-KNLVPDIVTYTILFNAVFKSGSNSYEWKFVNVIRDINP----PPRVLKY 608

Query: 355 NAVL 358
            A L
Sbjct: 609 LAAL 612



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 103/409 (25%), Positives = 190/409 (46%), Gaps = 9/409 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    V E  + + +M   G  PN  +Y +LI G C  G+    + + DEM   G+
Sbjct: 192 IDCLCRNGFVDEGFEFYNEMMGNGVCPNEFTYGSLIRGLCGVGKFLEGFGLVDEMIRRGL 251

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             +   ++VL+ G+ +   +  A  +  ++  R  E      N      L+   C +G V
Sbjct: 252 DVSVYVFTVLIDGLCKNGMLVEAREMFDEMVNRGYEP-----NIVTCTALMGGYCLKGNV 306

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +    + + + +     + +     I   C+ GR   A RV   M + G+ P++V+YNS+
Sbjct: 307 DMARELFDAIGEWGFKRDVWTYNVFIHGYCKVGRVRDAVRVFDEMCREGVVPNIVTYNSL 366

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +  LCK G    A+++++   + G  P   T  +L++GLC    L++A  +   ++    
Sbjct: 367 IDCLCKAGEVSGAWEIVKTMHRSGLTPDIVTCCILLDGLCKSKRLDQAILLFNQLVESGL 426

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                   I +   C  +   E +N+L  M      P ++T + +I+G C+ GRI  A +
Sbjct: 427 TPDVWSYTILIHGCCTSRRMGEAMNLLRDMHLKNLVPHIVTYSCLIDGLCRSGRISNAWR 486

Query: 301 VLNDM-VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           +LN+M V G    PD +T++ ++  L     + EA+  L+  M +RG  P ++ Y  ++ 
Sbjct: 487 LLNEMHVKGPL--PDTITYSILLDALWKKQHLDEAV-FLFNQMIKRGLEPDVMCYTIMID 543

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRF 408
           G  +  R++EA  +F  M    +V D  TY I+ + + +S       +F
Sbjct: 544 GYCKSERIDEAINLFREMHMKNLVPDIVTYTILFNAVFKSGSNSYEWKF 592



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 108/229 (47%), Gaps = 29/229 (12%)

Query: 278 DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNL 337
           D + LNTV+ G C  G + +AL+  +++V   F + + V++  +I GL   GR+ EA+NL
Sbjct: 106 DTVALNTVLKGLCVNGGVLKALEFHDEIVNNGF-SLNEVSYGILINGLCENGRVNEAVNL 164

Query: 338 LYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLC 397
           L  +  ++                                 G  V  +   Y+IVID LC
Sbjct: 165 LRMIEKEKEKEKD----------------------------GFFVKGNVVMYSIVIDCLC 196

Query: 398 ESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIV 457
            +  +DE   F+++++      + + Y ++I+GLC  GK  E    + E++  G+  ++ 
Sbjct: 197 RNGFVDEGFEFYNEMMGNGVCPNEFTYGSLIRGLCGVGKFLEGFGLVDEMIRRGLDVSVY 256

Query: 458 CYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
            + V+IDG CK  M  EA ++  EM   G  P+ VT   L   +  +GN
Sbjct: 257 VFTVLIDGLCKNGMLVEAREMFDEMVNRGYEPNIVTCTALMGGYCLKGN 305



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 67/142 (47%), Gaps = 8/142 (5%)

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
            F L  V  +  +F  +L  G   D+     V+ GLC +  + +A  F D+IV      +
Sbjct: 82  FFHLGHVSFSFSIFGKILKRGYGLDTVALNTVLKGLCVNGGVLKALEFHDEIVNNGFSLN 141

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSG--------VTPNIVCYNVVIDGACKLSMK 472
              Y  +I GLC +G+++EAV+ L  +            V  N+V Y++VID  C+    
Sbjct: 142 EVSYGILINGLCENGRVNEAVNLLRMIEKEKEKEKDGFFVKGNVVMYSIVIDCLCRNGFV 201

Query: 473 REAYQILREMRKNGLNPDAVTW 494
            E ++   EM  NG+ P+  T+
Sbjct: 202 DEGFEFYNEMMGNGVCPNEFTY 223


>gi|297745840|emb|CBI15896.3| unnamed protein product [Vitis vinifera]
          Length = 650

 Score =  202 bits (515), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 129/478 (26%), Positives = 239/478 (50%), Gaps = 15/478 (3%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C   +  +A +L   M  +G  P+V SY TLI+   + G M  A K+FDEM   GV P+ 
Sbjct: 160 CRKKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDV 219

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
             Y++L+ G  +  D+  A+    ++WER+ +   +  N  ++  +++ LC+ G  +E F
Sbjct: 220 ACYNILIDGFFKKGDILNAS----EIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESF 275

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
            I   M + +   + +    +I  LC SG   GA+RV   M + G++P +V YN++++G 
Sbjct: 276 EIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGY 335

Query: 185 CKHG---GCMRAYQLLE-EGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
            + G    C+  ++++E EG +     +  +Y +L+ GL   + +++A  + + +  K  
Sbjct: 336 LRAGRIEECLELWKVMEKEGCR-----TVVSYNILIRGLFENAKVDEAISIWELLPEKDC 390

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
              +    + +  LC      + L++L      +   D    +++ING C+ GR++E   
Sbjct: 391 CADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAG 450

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           VL+ M     C P+      +I G +   ++++AL   +  M  +G  P +VTYN ++ G
Sbjct: 451 VLDQMTKHG-CKPNPHVCNAVINGFVRASKLEDALR-FFGNMVSKGCFPTVVTYNTLING 508

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L +  R  EA  +   ML  G   +  TY+++++GLC+  +LD A   W   +      D
Sbjct: 509 LSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPD 568

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI 478
             ++  +I GLC SGK+ +A+    E+      PN+V +N +++G  K+     A +I
Sbjct: 569 VKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTHNTLMEGFYKVRDFERASKI 626



 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 121/485 (24%), Positives = 242/485 (49%), Gaps = 21/485 (4%)

Query: 24  GHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERA 83
           G  P + SY +L++    + + D A   F      G+ PN  TY++L++   R +  ++A
Sbjct: 109 GCQPGIRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKA 168

Query: 84  NVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACG 143
             L+  +WE     +  S +  ++  L++SL + GY+++  ++ ++MP+ + V  + AC 
Sbjct: 169 KELLNWMWE-----QGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPE-RGVTPDVACY 222

Query: 144 H-MIDSLCRSGRNHGASRVV-YVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGI 201
           + +ID   + G    AS +   +++   + P++ SYN +++GLCK G    ++++     
Sbjct: 223 NILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMK 282

Query: 202 QFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM----LSKKDVDRTRICNIYLRALCLI 257
           +       +TY  L+ GLCG  +L+ A +V + M    +S   V    + N YLRA    
Sbjct: 283 KNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRA---- 338

Query: 258 KNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVT 317
               E L +   M +  C+  V++ N +I G  +  +++EA+ +  +++  K C  D++T
Sbjct: 339 GRIEECLELWKVMEKEGCR-TVVSYNILIRGLFENAKVDEAISIW-ELLPEKDCCADSMT 396

Query: 318 FTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCM 377
           +  ++ GL   G + +AL++L +    RG       Y++++ GL R  R++E   V + M
Sbjct: 397 YGVLVHGLCKNGYLNKALSILEEAENGRG-DLDTFAYSSMINGLCREGRLDEVAGVLDQM 455

Query: 378 LGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKI 437
              G   +      VI+G   +++L++A RF+ ++V          Y  +I GL ++ + 
Sbjct: 456 TKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERF 515

Query: 438 HEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            EA   + E++  G  PN++ Y+++++G C+      A  +  +  + G  PD     I+
Sbjct: 516 SEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNII 575

Query: 498 DKLHG 502
             +HG
Sbjct: 576 --IHG 578



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 123/498 (24%), Positives = 226/498 (45%), Gaps = 23/498 (4%)

Query: 15  KLFFDMKSRGHVPNVVSYT-------------TLIHGYCRTGEMDVAYKVFDEMRHC-GV 60
           K  FD K   HV  +V                T+I  Y +    D A  +F  M    G 
Sbjct: 51  KRLFDPKLVAHVSRIVELIRTQKCKCPEDVALTVIKAYAKNSMPDQALDIFQRMHEIFGC 110

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P   +Y+ L+  ++ +   + A    F  +E M     LS N   +  L+   CR+   
Sbjct: 111 QPGIRSYNSLLNALIESNKWDEAESF-FLYFETM----GLSPNLQTYNILIKISCRKKQF 165

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           ++   +   M +     + F+ G +I+SL ++G    A ++   M +RG+TP +  YN +
Sbjct: 166 DKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNIL 225

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYL-PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           + G  K G  + A ++ E  ++   + P+  +Y V++ GLC     +++ ++   M   +
Sbjct: 226 IDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNE 285

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                   +  +  LC   N      V   M +    PDV+  NT++NG+ + GRIEE L
Sbjct: 286 RGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECL 345

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           ++    V  K      V++  +I GL    ++ EA+++ ++++P++      +TY  ++ 
Sbjct: 346 ELWK--VMEKEGCRTVVSYNILIRGLFENAKVDEAISI-WELLPEKDCCADSMTYGVLVH 402

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
           GL +   + +A  +           D+  Y+ +I+GLC   +LDE     D +       
Sbjct: 403 GLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKP 462

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           + +V  A+I G  R+ K+ +A+ F   +V  G  P +V YN +I+G  K     EAY ++
Sbjct: 463 NPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALV 522

Query: 480 REMRKNGLNPDAVTWRIL 497
           +EM   G  P+ +T+ +L
Sbjct: 523 KEMLHKGWKPNMITYSLL 540



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 99/371 (26%), Positives = 173/371 (46%), Gaps = 30/371 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   +  E+ +++  MK      ++ +Y+TLIHG C +G +D A +V+ EM   GV
Sbjct: 262 INGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGV 321

Query: 61  LPNSLTYSVLVRGVLRT------------------RDVERANVLMFKLWERMKEEEDLSV 102
            P+ + Y+ ++ G LR                   R V   N+L+  L+E  K +E +S+
Sbjct: 322 SPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRTVVSYNILIRGLFENAKVDEAISI 381

Query: 103 -----------NNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCR 151
                      ++  +  LV  LC+ GY+N+   I E+   G+   + FA   MI+ LCR
Sbjct: 382 WELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGLCR 441

Query: 152 SGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHT 211
            GR    + V+  M K G  P+    N++++G  +      A +     +  G  P+  T
Sbjct: 442 EGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVT 501

Query: 212 YKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFML 271
           Y  L+ GL       +A  +++ ML K         ++ +  LC  K     LN+    L
Sbjct: 502 YNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQAL 561

Query: 272 QTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRI 331
           +   +PDV   N +I+G C  G++E+AL++ ++M   K C P+ VT  T++ G   V   
Sbjct: 562 EKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRK-CVPNLVTHNTLMEGFYKVRDF 620

Query: 332 QEALNLLYQVM 342
           + A  +   ++
Sbjct: 621 ERASKIWDHIL 631


>gi|356529489|ref|XP_003533323.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 550

 Score =  202 bits (515), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 127/451 (28%), Positives = 228/451 (50%), Gaps = 9/451 (1%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M  RG  P++V+ + LI+ YC  G M  A+ V   +   G   N++T + +++G+    +
Sbjct: 104 MGLRGITPSIVTLSILINCYCHLGHMGFAFSVLGMVLKRGYQLNAITLTTIMKGLCINGE 163

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
           V +A     +  + +  +  L ++   +  L++ LC+ G   E F +   M +G+ V   
Sbjct: 164 VRKA----LEFHDSVVAQGFL-LDEVTYGTLINGLCKIGLTREAFELLHKM-EGQVVRPN 217

Query: 140 FACGHMI-DSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLE 198
               +MI D LC+ G    A  +   +  RG+ P + +Y  ++HG C  G      +LL 
Sbjct: 218 VVIYNMIVDGLCKDGLVTEARDLYSDVVGRGIDPDVFTYTCLIHGFCGLGQWREVTRLLC 277

Query: 199 EGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIK 258
           + +      + +TY +L++ LC +  L KA  +   M+ +         N  +   CL  
Sbjct: 278 DMVDRNVNLNVYTYNILIDALCKKGMLGKAHDMRNLMIERGQRPDLVTFNTLMSGYCLYN 337

Query: 259 NPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTF 318
           +  E   +     +    PDV + N +I G+CK  RI+EAL + N M   K  AP+ VT+
Sbjct: 338 DVVEARKLFDTFAECGITPDVWSYNILIIGYCKNNRIDEALSLFNKMNYKKL-APNIVTY 396

Query: 319 TTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCML 378
           +++I GL   GRI  A  L +  +   G SP ++TYN +L  L +++ V++A E+FN M 
Sbjct: 397 SSLIDGLCKSGRISYAWEL-FSAIHDGGPSPNVITYNIMLDALCKIQLVDKAIELFNLMF 455

Query: 379 GIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIH 438
             G+  + ++Y I+I+G C+S ++DEA   ++++   + + D+  Y  +I GLC+SG+I 
Sbjct: 456 ERGLTPNVSSYNILINGYCKSKRIDEAMNLFEEMHRRNLVPDSVTYNCLIDGLCKSGRIS 515

Query: 439 EAVHFLYELVDSGVTPNIVCYNVVIDGACKL 469
            A      + D G   +++ YN++ D   K+
Sbjct: 516 HAWELFNVMHDGGPPVDVITYNILFDAFSKI 546



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 99/353 (28%), Positives = 183/353 (51%), Gaps = 2/353 (0%)

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
           +I+  C  G    A  V+ ++ KRG   + ++  +I+ GLC +G   +A +  +  +  G
Sbjct: 119 LINCYCHLGHMGFAFSVLGMVLKRGYQLNAITLTTIMKGLCINGEVRKALEFHDSVVAQG 178

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL 264
           +L  E TY  L+ GLC      +A ++L  M  +       I N+ +  LC     TE  
Sbjct: 179 FLLDEVTYGTLINGLCKIGLTREAFELLHKMEGQVVRPNVVIYNMIVDGLCKDGLVTEAR 238

Query: 265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 324
           ++   ++     PDV T   +I+GFC +G+  E  ++L DMV  +    +  T+  +I  
Sbjct: 239 DLYSDVVGRGIDPDVFTYTCLIHGFCGLGQWREVTRLLCDMV-DRNVNLNVYTYNILIDA 297

Query: 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 384
           L   G + +A ++   +M +RG  P +VT+N ++ G      V EA+++F+     G+  
Sbjct: 298 LCKKGMLGKAHDM-RNLMIERGQRPDLVTFNTLMSGYCLYNDVVEARKLFDTFAECGITP 356

Query: 385 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFL 444
           D  +Y I+I G C++N++DEA   ++ + +     +   Y+++I GLC+SG+I  A    
Sbjct: 357 DVWSYNILIIGYCKNNRIDEALSLFNKMNYKKLAPNIVTYSSLIDGLCKSGRISYAWELF 416

Query: 445 YELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
             + D G +PN++ YN+++D  CK+ +  +A ++   M + GL P+  ++ IL
Sbjct: 417 SAIHDGGPSPNVITYNIMLDALCKIQLVDKAIELFNLMFERGLTPNVSSYNIL 469



 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 101/410 (24%), Positives = 194/410 (47%), Gaps = 42/410 (10%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M  LC    V +A +    + ++G + + V+Y TLI+G C+ G    A+++  +M    V
Sbjct: 155 MKGLCINGEVRKALEFHDSVVAQGFLLDEVTYGTLINGLCKIGLTREAFELLHKMEGQVV 214

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN + Y+++V G+ +   V  A  L   +  R  + +  +     +  L+   C  G  
Sbjct: 215 RPNVVIYNMIVDGLCKDGLVTEARDLYSDVVGRGIDPDVFT-----YTCLIHGFCGLGQW 269

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            EV R+  DM         +    +ID+LC+ G    A  +  +M +RG  P LV++N++
Sbjct: 270 REVTRLLCDMVDRNVNLNVYTYNILIDALCKKGMLGKAHDMRNLMIERGQRPDLVTFNTL 329

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G C +   + A +L +   + G  P   +Y +L+ G C  + +++A  +   M  KK 
Sbjct: 330 MSGYCLYNDVVEARKLFDTFAECGITPDVWSYNILIIGYCKNNRIDEALSLFNKMNYKK- 388

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                               P+++T +++I+G CK GRI  A +
Sbjct: 389 ----------------------------------LAPNIVTYSSLIDGLCKSGRISYAWE 414

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           + + +  G   +P+ +T+  ++  L  +  + +A+  L+ +M +RG +P + +YN ++ G
Sbjct: 415 LFSAIHDGG-PSPNVITYNIMLDALCKIQLVDKAIE-LFNLMFERGLTPNVSSYNILING 472

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD 410
             + +R++EA  +F  M    +V DS TY  +IDGLC+S ++  A   ++
Sbjct: 473 YCKSKRIDEAMNLFEEMHRRNLVPDSVTYNCLIDGLCKSGRISHAWELFN 522



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 91/367 (24%), Positives = 168/367 (45%), Gaps = 7/367 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC +    EA +L   M+ +   PNVV Y  ++ G C+ G +  A  ++ ++   G+
Sbjct: 190 INGLCKIGLTREAFELLHKMEGQVVRPNVVIYNMIVDGLCKDGLVTEARDLYSDVVGRGI 249

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+  TY+ L+ G            L+  + +R     ++++N   +  L+D+LC++G +
Sbjct: 250 DPDVFTYTCLIHGFCGLGQWREVTRLLCDMVDR-----NVNLNVYTYNILIDALCKKGML 304

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +   +   M +     +      ++   C       A ++     + G+TP + SYN +
Sbjct: 305 GKAHDMRNLMIERGQRPDLVTFNTLMSGYCLYNDVVEARKLFDTFAECGITPDVWSYNIL 364

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G CK+     A  L  +       P+  TY  L++GLC    +  A ++   +     
Sbjct: 365 IIGYCKNNRIDEALSLFNKMNYKKLAPNIVTYSSLIDGLCKSGRISYAWELFSAIHDGGP 424

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                  NI L ALC I+   + + +   M +    P+V + N +ING+CK  RI+EA+ 
Sbjct: 425 SPNVITYNIMLDALCKIQLVDKAIELFNLMFERGLTPNVSSYNILINGYCKSKRIDEAMN 484

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +  +M   +   PD+VT+  +I GL   GRI  A  L + VM   G    ++TYN +   
Sbjct: 485 LFEEM-HRRNLVPDSVTYNCLIDGLCKSGRISHAWEL-FNVMHDGGPPVDVITYNILFDA 542

Query: 361 LFRLRRV 367
             +++ V
Sbjct: 543 FSKIQHV 549



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 95/190 (50%), Gaps = 3/190 (1%)

Query: 313 PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKE 372
           P  V F  I+  ++ +     A++L  Q M  RG +P IVT + ++     L  +  A  
Sbjct: 76  PSVVEFNMILGSIVKMKHYPTAISLSKQ-MGLRGITPSIVTLSILINCYCHLGHMGFAFS 134

Query: 373 VFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLC 432
           V   +L  G   ++ T   ++ GLC + ++ +A  F D +V    + D   Y  +I GLC
Sbjct: 135 VLGMVLKRGYQLNAITLTTIMKGLCINGEVRKALEFHDSVVAQGFLLDEVTYGTLINGLC 194

Query: 433 RSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAV 492
           + G   EA   L+++    V PN+V YN+++DG CK  +  EA  +  ++   G++PD  
Sbjct: 195 KIGLTREAFELLHKMEGQVVRPNVVIYNMIVDGLCKDGLVTEARDLYSDVVGRGIDPDVF 254

Query: 493 TWRILDKLHG 502
           T+  L  +HG
Sbjct: 255 TYTCL--IHG 262


>gi|15221671|ref|NP_176495.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169919|sp|Q9CAN6.1|PPR97_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63070, mitochondrial; Flags: Precursor
 gi|12323265|gb|AAG51617.1|AC010795_21 unknown protein; 38394-36551 [Arabidopsis thaliana]
 gi|332195929|gb|AEE34050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 590

 Score =  202 bits (515), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 127/490 (25%), Positives = 240/490 (48%), Gaps = 8/490 (1%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           ++ +A  LF DM      P++V ++ L+    +  + D+   + ++M++ G+  N  TYS
Sbjct: 55  KLDDAIGLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYS 114

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
           + +    R   +  A  ++ K+ +       +++N+     L++  C    ++E   + +
Sbjct: 115 IFINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNS-----LLNGFCHGNRISEAVALVD 169

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
            M +     +      ++  L +  +   A  +V  M  +G  P LV+Y ++++GLCK G
Sbjct: 170 QMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRG 229

Query: 189 GCMRAYQLLEEGIQFGYLPSEHT-YKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC 247
               A  LL + ++ G + ++   Y  +++GLC    ++ A  +   M +K         
Sbjct: 230 EPDLALNLLNK-MEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTY 288

Query: 248 NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA 307
           N  +  LC     ++   +L  ML+    PD++  N +I+ F K G++ EA K+ ++MV 
Sbjct: 289 NPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVK 348

Query: 308 GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRV 367
            K C PD V + T+I G     R++E + + ++ M QRG     VTY  ++ G F+ R  
Sbjct: 349 SKHCFPDVVAYNTLIKGFCKYKRVEEGMEV-FREMSQRGLVGNTVTYTTLIHGFFQARDC 407

Query: 368 EEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAM 427
           + A+ VF  M+  GV  D  TY I++DGLC +  ++ A   ++ +       D   Y  M
Sbjct: 408 DNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTM 467

Query: 428 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
           I+ LC++GK+ +       L   GV PN+V Y  ++ G C+  +K EA  +  EM+++G 
Sbjct: 468 IEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDGP 527

Query: 488 NPDAVTWRIL 497
            P++ T+  L
Sbjct: 528 LPNSGTYNTL 537



 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 131/511 (25%), Positives = 227/511 (44%), Gaps = 54/511 (10%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C  S++  A  +   M   G+ P++V+  +L++G+C    +  A  + D+M   G 
Sbjct: 117 INYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGY 176

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKE---EEDLSVNNAAFANLVDSLCRE 117
            P+++T++ LV G+ +      A  L+    ERM     + DL      +  +++ LC+ 
Sbjct: 177 QPDTVTFTTLVHGLFQHNKASEAVALV----ERMVVKGCQPDL----VTYGAVINGLCKR 228

Query: 118 GYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
           G  +    +   M +GK   +      +ID LC+      A  +   M  +G+ P + +Y
Sbjct: 229 GEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTY 288

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
           N ++  LC +G    A +LL + ++    P    +  L++    E  L +A K+   M+ 
Sbjct: 289 NPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVK 348

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
            K                                   C PDV+  NT+I GFCK  R+EE
Sbjct: 349 SK----------------------------------HCFPDVVAYNTLIKGFCKYKRVEE 374

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
            ++V  +M + +    + VT+TT+I G         A  ++++ M   G  P I+TYN +
Sbjct: 375 GMEVFREM-SQRGLVGNTVTYTTLIHGFFQARDCDNA-QMVFKQMVSDGVHPDIMTYNIL 432

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS- 416
           L GL     VE A  VF  M    +  D  TY  +I+ LC++ ++++    WD     S 
Sbjct: 433 LDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDG---WDLFCSLSL 489

Query: 417 -NIHDNYV-YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKRE 474
             +  N V Y  M+ G CR G   EA     E+ + G  PN   YN +I    +   +  
Sbjct: 490 KGVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTLIRARLRDGDEAA 549

Query: 475 AYQILREMRKNGLNPDAVTWRIL-DKLHGNR 504
           + ++++EMR  G   DA T+ ++ + LH  R
Sbjct: 550 SAELIKEMRSCGFAGDASTFGLVTNMLHDGR 580



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 112/225 (49%), Gaps = 6/225 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C   RV E  ++F +M  RG V N V+YTTLIHG+ +  + D A  VF +M   GV P+
Sbjct: 366 FCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPD 425

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY++L+ G+    +VE A V    ++E M ++ D+ ++   +  ++++LC+ G V + 
Sbjct: 426 IMTYNILLDGLCNNGNVETALV----VFEYM-QKRDMKLDIVTYTTMIEALCKAGKVEDG 480

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           + +   +              M+   CR G    A  +   M++ G  P+  +YN+++  
Sbjct: 481 WDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTLIRA 540

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKA 228
             + G    + +L++E    G+     T+  LV  +  +  L+K+
Sbjct: 541 RLRDGDEAASAELIKEMRSCGFAGDASTFG-LVTNMLHDGRLDKS 584


>gi|357450627|ref|XP_003595590.1| hypothetical protein MTR_2g049740 [Medicago truncatula]
 gi|355484638|gb|AES65841.1| hypothetical protein MTR_2g049740 [Medicago truncatula]
          Length = 859

 Score =  202 bits (515), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 156/598 (26%), Positives = 261/598 (43%), Gaps = 111/598 (18%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C + RV  A ++   M   G  PNVV+Y  L++GY   G+ +   +V   M   GV  N 
Sbjct: 237 CQVGRVDVAMEVLEKMVKEGLEPNVVTYNGLVNGYVGRGDFEGVERVLRLMSERGVSRNV 296

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           +T ++L+RG  +   ++ A     KL   ++E+E L V+   +  LVD  C+ G + +  
Sbjct: 297 VTCTMLMRGYCKKGKMDEAE----KLLREVEEDELLVVDERVYGVLVDGYCQMGRMEDAV 352

Query: 125 RIAEDMPQ-GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           RI ++M + G  VN    C  +I   C+ G+   A RV   M    L P   SYN+++ G
Sbjct: 353 RIRDEMLRVGLKVNM-VICNTLIKGYCKLGQVCEAERVFVGMVDWNLKPDCYSYNTLLDG 411

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK---- 239
            C+ G   +A+ L EE +  G  P+  TY  +++GL      + A  +   M+ +     
Sbjct: 412 YCREGKVSKAFMLCEEMLGDGITPTVVTYNTVIKGLVDVGSYDDALHLWHLMVERGVTPN 471

Query: 240 ---------------DVDR----------------TRICNIYLRALCLIKNPTELLNVLV 268
                          D DR                T   N  +  LC +    E   V  
Sbjct: 472 EISCCTMLDCFFKMGDSDRAMMLWKEILGRGFTKSTVAFNTMISGLCKMGKLMEAGAVFD 531

Query: 269 FMLQTQCQPDVITLNTVINGFCKMGRIEEALKV---------------LNDMVAGKF--- 310
            M +    PD IT  T+ +G+CK G ++EA ++                N ++ G F   
Sbjct: 532 RMKELGLSPDEITYRTLSDGYCKNGNVQEAFQIKGVMERQAMSASIEMYNSLIDGLFKIR 591

Query: 311 ----------------CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTY 354
                            +P+ VT+ T+I G  +  ++ +A +L ++ M +RG++P +V  
Sbjct: 592 KLNDVTDLLVEMQTRGLSPNVVTYGTLISGWCDEQKLDKAFHLYFE-MIERGFTPNVVVC 650

Query: 355 NAVLRGLFRLRRVEEAKEVFNCMLGIGVVA------------------------------ 384
           + ++  L+R  R+ EA  + + ML   ++A                              
Sbjct: 651 SKIVSSLYRDDRISEATVILDKMLDFDILAVHNKCSDKLVKNDLTLEAQKIADSLDKSDI 710

Query: 385 -----DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
                ++  Y I IDGLC+S +LDEA+     ++    + DN+ Y  +I     SG + E
Sbjct: 711 CNSLSNNIVYNIAIDGLCKSGKLDEARSVLSVLMSRGFLPDNFTYCTLIHACSVSGNVDE 770

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           A     E+++ G+ PNI  YN +I+G CKL     A ++  ++ + GL P+AVT+ IL
Sbjct: 771 AFKLRDEMLEKGLIPNITIYNALINGLCKLGNIDRAQRLFYKLYQKGLVPNAVTYNIL 828



 Score =  167 bits (424), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 123/484 (25%), Positives = 231/484 (47%), Gaps = 44/484 (9%)

Query: 11  GEAHKLFFD-MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSV 69
           G    + FD +   G VP+V   + +++ +C+ G +DVA +V ++M   G+ PN +TY+ 
Sbjct: 207 GRVAVMVFDQIVGTGIVPDVYMCSIVVNAHCQVGRVDVAMEVLEKMVKEGLEPNVVTYNG 266

Query: 70  LVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAED 129
           LV G +   D E    ++     R+  E  +S N      L+   C++G ++E  ++  +
Sbjct: 267 LVNGYVGRGDFEGVERVL-----RLMSERGVSRNVVTCTMLMRGYCKKGKMDEAEKLLRE 321

Query: 130 MPQGKS-VNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
           + + +  V +E   G ++D  C+ GR   A R+   M + GL  ++V  N+++ G CK G
Sbjct: 322 VEEDELLVVDERVYGVLVDGYCQMGRMEDAVRIRDEMLRVGLKVNMVICNTLIKGYCKLG 381

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
               A ++    + +   P  ++Y  L++G C E  + KA     FML ++         
Sbjct: 382 QVCEAERVFVGMVDWNLKPDCYSYNTLLDGYCREGKVSKA-----FMLCEE--------- 427

Query: 249 IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 308
                                ML     P V+T NTVI G   +G  ++AL + + MV  
Sbjct: 428 ---------------------MLGDGITPTVVTYNTVIKGLVDVGSYDDALHLWHLMVE- 465

Query: 309 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE 368
           +   P+ ++  T++     +G    A+ +L++ +  RG++   V +N ++ GL ++ ++ 
Sbjct: 466 RGVTPNEISCCTMLDCFFKMGDSDRAM-MLWKEILGRGFTKSTVAFNTMISGLCKMGKLM 524

Query: 369 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI 428
           EA  VF+ M  +G+  D  TY  + DG C++  + EA +    +   +      +Y ++I
Sbjct: 525 EAGAVFDRMKELGLSPDEITYRTLSDGYCKNGNVQEAFQIKGVMERQAMSASIEMYNSLI 584

Query: 429 KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLN 488
            GL +  K+++    L E+   G++PN+V Y  +I G C      +A+ +  EM + G  
Sbjct: 585 DGLFKIRKLNDVTDLLVEMQTRGLSPNVVTYGTLISGWCDEQKLDKAFHLYFEMIERGFT 644

Query: 489 PDAV 492
           P+ V
Sbjct: 645 PNVV 648



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 116/491 (23%), Positives = 212/491 (43%), Gaps = 48/491 (9%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C L +V EA ++F  M      P+  SY TL+ GYCR G++  A+ + +EM   G+ P  
Sbjct: 378 CKLGQVCEAERVFVGMVDWNLKPDCYSYNTLLDGYCREGKVSKAFMLCEEMLGDGITPTV 437

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           +TY+ +++G++     + A      LW  M E   ++ N  +   ++D   + G  +   
Sbjct: 438 VTYNTVIKGLVDVGSYDDA----LHLWHLMVER-GVTPNEISCCTMLDCFFKMGDSDRAM 492

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
            + +++          A   MI  LC+ G+   A  V   M++ GL+P  ++Y ++  G 
Sbjct: 493 MLWKEILGRGFTKSTVAFNTMISGLCKMGKLMEAGAVFDRMKELGLSPDEITYRTLSDGY 552

Query: 185 CKHGGCMRAYQ-----------------------------------LLEEGIQFGYLPSE 209
           CK+G    A+Q                                   LL E    G  P+ 
Sbjct: 553 CKNGNVQEAFQIKGVMERQAMSASIEMYNSLIDGLFKIRKLNDVTDLLVEMQTRGLSPNV 612

Query: 210 HTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVF 269
            TY  L+ G C E  L+KA  +   M+ +       +C+  + +L      +E   +L  
Sbjct: 613 VTYGTLISGWCDEQKLDKAFHLYFEMIERGFTPNVVVCSKIVSSLYRDDRISEATVILDK 672

Query: 270 MLQTQCQPDVITL-NTVINGFCKMGRIEEALKVLNDMVAGKFC--APDAVTFTTIIFGLL 326
           ML      D++ + N   +   K     EA K+ + +     C    + + +   I GL 
Sbjct: 673 MLDF----DILAVHNKCSDKLVKNDLTLEAQKIADSLDKSDICNSLSNNIVYNIAIDGLC 728

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
             G++ EA ++L  V+  RG+ P   TY  ++        V+EA ++ + ML  G++ + 
Sbjct: 729 KSGKLDEARSVL-SVLMSRGFLPDNFTYCTLIHACSVSGNVDEAFKLRDEMLEKGLIPNI 787

Query: 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE 446
           T Y  +I+GLC+   +D A+R +  +     + +   Y  +I   CR G + +A     +
Sbjct: 788 TIYNALINGLCKLGNIDRAQRLFYKLYQKGLVPNAVTYNILIGCYCRIGDLDKASRLREK 847

Query: 447 LVDSGVTPNIV 457
           + + G++  I+
Sbjct: 848 MTEEGISTRII 858



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 112/479 (23%), Positives = 210/479 (43%), Gaps = 55/479 (11%)

Query: 62  PNSLTYSVLVRGVLRTRDVERANVLMFKLWER---------------MKEEEDLSVNNAA 106
           P+SL+YS+L+  +   R    A  ++ +L +                    ++    +  
Sbjct: 99  PHSLSYSILLHILTHARLFPEATTVLRQLMDLHCTNNYRAYAVCNHVFSVYKEFGFCSGV 158

Query: 107 FANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMR 166
           F  L+ +    G       + ++M +   V    +C  ++  L + G    A  V   + 
Sbjct: 159 FDMLMKAFAERGMTKHALYVFDEMSRIGRVPGLRSCSFLLGKLVQKGEGRVAVMVFDQIV 218

Query: 167 KRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLE 226
             G+ P +   + +V+  C+ G    A ++LE+ ++ G  P+  TY  LV G  G  D E
Sbjct: 219 GTGIVPDVYMCSIVVNAHCQVGRVDVAMEVLEKMVKEGLEPNVVTYNGLVNGYVGRGDFE 278

Query: 227 KARKVLQFMLSKKDVDRTRI-CNIYLRALC----------LIKNPTE---------LLNV 266
              +VL+ M S++ V R  + C + +R  C          L++   E         +  V
Sbjct: 279 GVERVLRLM-SERGVSRNVVTCTMLMRGYCKKGKMDEAEKLLREVEEDELLVVDERVYGV 337

Query: 267 LV-----------------FMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK 309
           LV                  ML+   + +++  NT+I G+CK+G++ EA +V   MV   
Sbjct: 338 LVDGYCQMGRMEDAVRIRDEMLRVGLKVNMVICNTLIKGYCKLGQVCEAERVFVGMVDWN 397

Query: 310 FCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEE 369
              PD  ++ T++ G    G++ +A  +L + M   G +P +VTYN V++GL  +   ++
Sbjct: 398 L-KPDCYSYNTLLDGYCREGKVSKAF-MLCEEMLGDGITPTVVTYNTVIKGLVDVGSYDD 455

Query: 370 AKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIK 429
           A  +++ M+  GV  +  +   ++D   +    D A   W +I+          +  MI 
Sbjct: 456 ALHLWHLMVERGVTPNEISCCTMLDCFFKMGDSDRAMMLWKEILGRGFTKSTVAFNTMIS 515

Query: 430 GLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLN 488
           GLC+ GK+ EA      + + G++P+ + Y  + DG CK    +EA+QI   M +  ++
Sbjct: 516 GLCKMGKLMEAGAVFDRMKELGLSPDEITYRTLSDGYCKNGNVQEAFQIKGVMERQAMS 574



 Score = 44.3 bits (103), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 36/192 (18%), Positives = 77/192 (40%), Gaps = 20/192 (10%)

Query: 335 LNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAI--- 391
           L+  +       Y P  ++Y+ +L  L   R   EA  V   ++ +    +   YA+   
Sbjct: 85  LSFFHLATQNSHYRPHSLSYSILLHILTHARLFPEATTVLRQLMDLHCTNNYRAYAVCNH 144

Query: 392 -----------------VIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRS 434
                            ++    E      A   +D++     +      + ++  L + 
Sbjct: 145 VFSVYKEFGFCSGVFDMLMKAFAERGMTKHALYVFDEMSRIGRVPGLRSCSFLLGKLVQK 204

Query: 435 GKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
           G+   AV    ++V +G+ P++   ++V++  C++     A ++L +M K GL P+ VT+
Sbjct: 205 GEGRVAVMVFDQIVGTGIVPDVYMCSIVVNAHCQVGRVDVAMEVLEKMVKEGLEPNVVTY 264

Query: 495 RILDKLHGNRGN 506
             L   +  RG+
Sbjct: 265 NGLVNGYVGRGD 276


>gi|297797589|ref|XP_002866679.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312514|gb|EFH42938.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 915

 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 133/509 (26%), Positives = 251/509 (49%), Gaps = 16/509 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ L     V E  +++ +M      PN+ +Y  +++GYC+ G ++ A +    +   G+
Sbjct: 190 LNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKVGNVEEANQYVSMIVEAGL 249

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+  TY+ L+ G  + +D++ A    FK+++ M   +    N  A+ +L+  LC E  +
Sbjct: 250 DPDFFTYTSLIMGYCQRKDLDSA----FKVFKEMP-LKGCRRNEVAYTHLIHGLCVERRI 304

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E   +   M              +I +LC S R   A  +V  M ++G+ P++ +Y  +
Sbjct: 305 DEAMDLFVKMKDDDCYPTVRTYTVLIKALCGSERKSEALNLVKEMEEKGIKPNIHTYTVL 364

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +  LC      +A +LL + ++ G +P+  TY  L+ G C    +E A  V++ M S+  
Sbjct: 365 IDSLCSQCKLEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDALDVVELMESRNL 424

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
              TR  N  ++  C  +N  + + VL  ML+ +  PDV+T N++I+G C+ G  + A +
Sbjct: 425 RPNTRTYNELIKGYCK-RNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYR 483

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +L+ ++  +   PD  T+T++I  L    R++EA + L+  + Q+   P +V Y A++ G
Sbjct: 484 LLS-LMNDRGLVPDPWTYTSMIDSLCKSKRVEEACD-LFDSLEQKDVIPNVVMYTALIDG 541

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV----WPS 416
             +  +V EA  +   ML    + +S T+  +I GLC   +L EA    + +V     P+
Sbjct: 542 YCKAGKVNEAHLMLEKMLSKNCLPNSLTFNALIHGLCTDGKLKEATLLEEKMVKIDLQPT 601

Query: 417 NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAY 476
              D      +I  L + G    A     +++ SG  P+   Y   I   C+    ++A 
Sbjct: 602 VSTD----TILIHRLLKDGDFDHAYRRFQQMLSSGTKPDAHTYTTFIQTYCREGRLQDAE 657

Query: 477 QILREMRKNGLNPDAVTWRILDKLHGNRG 505
            ++ +M++NG++PD  T+  L K +G+ G
Sbjct: 658 DMVAKMKENGVSPDLFTYSSLIKGYGDLG 686



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 132/495 (26%), Positives = 237/495 (47%), Gaps = 8/495 (1%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C +  V EA++    +   G  P+  +YT+LI GYC+  ++D A+KVF EM   G   N 
Sbjct: 229 CKVGNVEEANQYVSMIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFKEMPLKGCRRNE 288

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           + Y+ L+ G+   R ++ A  L  K+     +++D       +  L+ +LC     +E  
Sbjct: 289 VAYTHLIHGLCVERRIDEAMDLFVKM-----KDDDCYPTVRTYTVLIKALCGSERKSEAL 343

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
            + ++M +            +IDSLC   +   A  ++  M ++GL P++++YN++++G 
Sbjct: 344 NLVKEMEEKGIKPNIHTYTVLIDSLCSQCKLEKARELLGQMLEKGLMPNVITYNALINGY 403

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
           CK G    A  ++E        P+  TY  L++G C + ++ KA  VL  ML +K +   
Sbjct: 404 CKRGMIEDALDVVELMESRNLRPNTRTYNELIKGYC-KRNVHKAMGVLNKMLERKVLPDV 462

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
              N  +   C   N      +L  M      PD  T  ++I+  CK  R+EEA  +  D
Sbjct: 463 VTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDPWTYTSMIDSLCKSKRVEEACDLF-D 521

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
            +  K   P+ V +T +I G    G++ EA +L+ + M  +   P  +T+NA++ GL   
Sbjct: 522 SLEQKDVIPNVVMYTALIDGYCKAGKVNEA-HLMLEKMLSKNCLPNSLTFNALIHGLCTD 580

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY 424
            +++EA  +   M+ I +    +T  I+I  L +    D A R +  ++      D + Y
Sbjct: 581 GKLKEATLLEEKMVKIDLQPTVSTDTILIHRLLKDGDFDHAYRRFQQMLSSGTKPDAHTY 640

Query: 425 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484
              I+  CR G++ +A   + ++ ++GV+P++  Y+ +I G   L     A+ +L+ M  
Sbjct: 641 TTFIQTYCREGRLQDAEDMVAKMKENGVSPDLFTYSSLIKGYGDLGRTNSAFVVLKRMHD 700

Query: 485 NGLNPDAVTWRILDK 499
            G  P   T+  L K
Sbjct: 701 TGCEPSQHTFLSLIK 715



 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 133/466 (28%), Positives = 222/466 (47%), Gaps = 43/466 (9%)

Query: 32  YTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLW 91
           Y TL++   R G +D   +V+ EM    V PN  TY+ +V G  +  +VE AN      +
Sbjct: 186 YNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKVGNVEEANQ-----Y 240

Query: 92  ERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCR 151
             M  E  L  +   + +L+   C+   ++  F++ ++MP       E A  H+I  LC 
Sbjct: 241 VSMIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFKEMPLKGCRRNEVAYTHLIHGLCV 300

Query: 152 SGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHT 211
             R   A  +   M+     P++ +Y  ++  LC       A  L++E  + G  P+ HT
Sbjct: 301 ERRIDEAMDLFVKMKDDDCYPTVRTYTVLIKALCGSERKSEALNLVKEMEEKGIKPNIHT 360

Query: 212 YKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFML 271
           Y VL++ LC +  LEKAR++L  ML K                                 
Sbjct: 361 YTVLIDSLCSQCKLEKARELLGQMLEK--------------------------------- 387

Query: 272 QTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRI 331
                P+VIT N +ING+CK G IE+AL V+ +++  +   P+  T+  +I G      +
Sbjct: 388 --GLMPNVITYNALINGYCKRGMIEDALDVV-ELMESRNLRPNTRTYNELIKGYCK-RNV 443

Query: 332 QEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAI 391
            +A+ +L +++ +R   P +VTYN+++ G  R    + A  + + M   G+V D  TY  
Sbjct: 444 HKAMGVLNKML-ERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDPWTYTS 502

Query: 392 VIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 451
           +ID LC+S +++EA   +D +     I +  +Y A+I G C++GK++EA   L +++   
Sbjct: 503 MIDSLCKSKRVEEACDLFDSLEQKDVIPNVVMYTALIDGYCKAGKVNEAHLMLEKMLSKN 562

Query: 452 VTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
             PN + +N +I G C     +EA  +  +M K  L P   T  IL
Sbjct: 563 CLPNSLTFNALIHGLCTDGKLKEATLLEEKMVKIDLQPTVSTDTIL 608



 Score =  175 bits (443), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 134/528 (25%), Positives = 256/528 (48%), Gaps = 35/528 (6%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   ++ +A +L   M  +G +PNV++Y  LI+GYC+ G ++ A  V + M    +
Sbjct: 365 IDSLCSQCKLEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDALDVVELMESRNL 424

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN+ TY+ L++G  + R+V +A  ++ K+ ER    + ++ N     +L+D  CR G  
Sbjct: 425 RPNTRTYNELIKGYCK-RNVHKAMGVLNKMLERKVLPDVVTYN-----SLIDGQCRSGNF 478

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +  +R+   M     V + +    MIDSLC+S R   A  +   + ++ + P++V Y ++
Sbjct: 479 DSAYRLLSLMNDRGLVPDPWTYTSMIDSLCKSKRVEEACDLFDSLEQKDVIPNVVMYTAL 538

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G CK G    A+ +LE+ +    LP+  T+  L+ GLC +  L++A  +L+  + K D
Sbjct: 539 IDGYCKAGKVNEAHLMLEKMLSKNCLPNSLTFNALIHGLCTDGKLKEA-TLLEEKMVKID 597

Query: 241 VDRTRICN-IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
           +  T   + I +  L    +          ML +  +PD  T  T I  +C+ GR+++A 
Sbjct: 598 LQPTVSTDTILIHRLLKDGDFDHAYRRFQQMLSSGTKPDAHTYTTFIQTYCREGRLQDA- 656

Query: 300 KVLNDMVAG---KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
               DMVA       +PD  T++++I G  ++GR   A  +L + M   G  P   T+ +
Sbjct: 657 ---EDMVAKMKENGVSPDLFTYSSLIKGYGDLGRTNSAFVVLKR-MHDTGCEPSQHTFLS 712

Query: 357 VLRGLFRLR--RVEEAK----------------EVFNCMLGIGVVADSTTYAIVIDGLCE 398
           +++ L  ++  +V+  +                E+   M+  GV  ++ +Y  ++ G+CE
Sbjct: 713 LIKHLLEMKYGKVKGGEPGVCVMSNMMEFDIVVELLEKMVEHGVTPNAKSYEKLMLGICE 772

Query: 399 SNQLDEAKRFWDDIVWPSNIHDN-YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIV 457
              L  A++ +D +     I  +  V+ A++   C+  K +EA   + +++  G  P + 
Sbjct: 773 IGNLRVAEKVFDHMQQKEGISPSELVFNALLSCCCKLEKHNEAAKVVDDMICVGHLPQLE 832

Query: 458 CYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
              ++I    K   K     + + + + G   D + W+I+    G +G
Sbjct: 833 SCKILICRLYKKGEKERGTSVFQNLLQCGYYDDELAWKIIIDGVGKQG 880



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 132/495 (26%), Positives = 225/495 (45%), Gaps = 26/495 (5%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LCG  R  EA  L  +M+ +G  PN+ +YT LI   C   +++ A ++  +M   G++PN
Sbjct: 333 LCGSERKSEALNLVKEMEEKGIKPNIHTYTVLIDSLCSQCKLEKARELLGQMLEKGLMPN 392

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY+ L+ G  +   +E A      + E M E  +L  N   +  L+   C+   V++ 
Sbjct: 393 VITYNALINGYCKRGMIEDA----LDVVELM-ESRNLRPNTRTYNELIKGYCKRN-VHKA 446

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             +   M + K + +      +ID  CRSG    A R++ +M  RGL P   +Y S++  
Sbjct: 447 MGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDPWTYTSMIDS 506

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LCK      A  L +   Q   +P+   Y  L++G C    + +A  +L+ MLSK  +  
Sbjct: 507 LCKSKRVEEACDLFDSLEQKDVIPNVVMYTALIDGYCKAGKVNEAHLMLEKMLSKNCLPN 566

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
           +   N  +  LC      E   +   M++   QP V T   +I+   K G  + A +   
Sbjct: 567 SLTFNALIHGLCTDGKLKEATLLEEKMVKIDLQPTVSTDTILIHRLLKDGDFDHAYRRFQ 626

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            M++     PDA T+TT I      GR+Q+A +++ + M + G SP + TY+++++G   
Sbjct: 627 QMLSSG-TKPDAHTYTTFIQTYCREGRLQDAEDMVAK-MKENGVSPDLFTYSSLIKGYGD 684

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
           L R   A  V   M   G      T+  +I  L E  +  + K     +   SN+ +  +
Sbjct: 685 LGRTNSAFVVLKRMHDTGCEPSQHTFLSLIKHLLEM-KYGKVKGGEPGVCVMSNMMEFDI 743

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM- 482
                            V  L ++V+ GVTPN   Y  ++ G C++   R A ++   M 
Sbjct: 744 ----------------VVELLEKMVEHGVTPNAKSYEKLMLGICEIGNLRVAEKVFDHMQ 787

Query: 483 RKNGLNPDAVTWRIL 497
           +K G++P  + +  L
Sbjct: 788 QKEGISPSELVFNAL 802



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 108/420 (25%), Positives = 196/420 (46%), Gaps = 28/420 (6%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   RV EA  LF  ++ +  +PNVV YT LI GYC+ G+++ A+ + ++M     
Sbjct: 504 IDSLCKSKRVEEACDLFDSLEQKDVIPNVVMYTALIDGYCKAGKVNEAHLMLEKMLSKNC 563

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           LPNSLT++ L+ G+     ++ A +L  K+ +      DL    +    L+  L ++G  
Sbjct: 564 LPNSLTFNALIHGLCTDGKLKEATLLEEKMVKI-----DLQPTVSTDTILIHRLLKDGDF 618

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +  +R  + M    +  +       I + CR GR   A  +V  M++ G++P L +Y+S+
Sbjct: 619 DHAYRRFQQMLSSGTKPDAHTYTTFIQTYCREGRLQDAEDMVAKMKENGVSPDLFTYSSL 678

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVE---------------GLCGESDL 225
           + G    G    A+ +L+     G  PS+HT+  L++               G+C  S++
Sbjct: 679 IKGYGDLGRTNSAFVVLKRMHDTGCEPSQHTFLSLIKHLLEMKYGKVKGGEPGVCVMSNM 738

Query: 226 ---EKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQ-CQPDVIT 281
              +   ++L+ M+        +     +  +C I N      V   M Q +   P  + 
Sbjct: 739 MEFDIVVELLEKMVEHGVTPNAKSYEKLMLGICEIGNLRVAEKVFDHMQQKEGISPSELV 798

Query: 282 LNTVINGFCKMGRIEEALKVLNDMV-AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQ 340
            N +++  CK+ +  EA KV++DM+  G    P   +   +I  L   G  +   + ++Q
Sbjct: 799 FNALLSCCCKLEKHNEAAKVVDDMICVGHL--PQLESCKILICRLYKKGEKERGTS-VFQ 855

Query: 341 VMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN 400
            + Q GY    + +  ++ G+ +   VE   E+FN M   G    S TY+++I+G  +S 
Sbjct: 856 NLLQCGYYDDELAWKIIIDGVGKQGLVEAFYELFNVMEKNGCTFSSQTYSLLIEGPPDST 915



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 116/227 (51%), Gaps = 10/227 (4%)

Query: 283 NTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVM 342
           NT++N   + G ++E  +V  +M+  K C P+  T+  ++ G   VG ++EA N    ++
Sbjct: 187 NTLLNSLARFGLVDEMKQVYMEMLEDKVC-PNIYTYNKMVNGYCKVGNVEEA-NQYVSMI 244

Query: 343 PQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQL 402
            + G  P   TY +++ G  + + ++ A +VF  M   G   +   Y  +I GLC   ++
Sbjct: 245 VEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFKEMPLKGCRRNEVAYTHLIHGLCVERRI 304

Query: 403 DEAKRFW----DDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVC 458
           DEA   +    DD  +P+       Y  +IK LC S +  EA++ + E+ + G+ PNI  
Sbjct: 305 DEAMDLFVKMKDDDCYPTV----RTYTVLIKALCGSERKSEALNLVKEMEEKGIKPNIHT 360

Query: 459 YNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
           Y V+ID  C      +A ++L +M + GL P+ +T+  L   +  RG
Sbjct: 361 YTVLIDSLCSQCKLEKARELLGQMLEKGLMPNVITYNALINGYCKRG 407



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 88/219 (40%), Gaps = 43/219 (19%)

Query: 314 DAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEV 373
           D+V  T  +  L       E+  L Y+++        I  YN +L  L R   V+E K+V
Sbjct: 154 DSVADTLFVLDLCRKMNKDESFELKYKLI--------IGCYNTLLNSLARFGLVDEMKQV 205

Query: 374 FNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAM------ 427
           +  ML   V  +  TY  +++G C+   ++EA ++   IV      D + Y ++      
Sbjct: 206 YMEMLEDKVCPNIYTYNKMVNGYCKVGNVEEANQYVSMIVEAGLDPDFFTYTSLIMGYCQ 265

Query: 428 -----------------------------IKGLCRSGKIHEAVHFLYELVDSGVTPNIVC 458
                                        I GLC   +I EA+    ++ D    P +  
Sbjct: 266 RKDLDSAFKVFKEMPLKGCRRNEVAYTHLIHGLCVERRIDEAMDLFVKMKDDDCYPTVRT 325

Query: 459 YNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           Y V+I   C    K EA  +++EM + G+ P+  T+ +L
Sbjct: 326 YTVLIKALCGSERKSEALNLVKEMEEKGIKPNIHTYTVL 364


>gi|255572426|ref|XP_002527150.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533489|gb|EEF35232.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 874

 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 151/540 (27%), Positives = 256/540 (47%), Gaps = 85/540 (15%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC    + +A +LF  M +RG  PN  ++  L+ GYCR G      ++  +MR  G+LPN
Sbjct: 157 LCDSGHLEDARELFDKMPARGCEPNEFTFGILVRGYCRAGLASKGLELLGQMRTMGILPN 216

Query: 64  SLTYSVLVRGVL---RTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           ++ Y+ L+       +T D E       KL ++M+ E+ L  +   F + + +LC  G +
Sbjct: 217 NVLYNTLISSFCKEGKTHDAE-------KLVDKMR-EDGLVPHVETFNSRISALCGSGKI 268

Query: 121 NEVFRIAEDMPQGKSVNEEFACGH--------MIDSLCRSGRNHGASRVVYVMRKRGLTP 172
            E  RI  DM     ++EE    H        M+   C+ G    A  +V  M++     
Sbjct: 269 LEASRIFRDM----QIDEELGLPHPNVITYKLMLMGFCKEGMLEEAKTLVDTMKRNANFI 324

Query: 173 SLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVL 232
           +L SYN  + GL ++G  + A+ +L+E +  G  P  ++Y ++++GLC    L  AR ++
Sbjct: 325 NLESYNIWLLGLIRNGKLLEAWIVLKEMLGIGIEPDIYSYNIVMDGLCKNGMLSDARMLM 384

Query: 233 QFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKM 292
                                                M++    PD +T +T+++G+C  
Sbjct: 385 G-----------------------------------LMIRNGILPDTVTYSTLLHGYCSK 409

Query: 293 GRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIV 352
           G++ EA  +L++M++   C+P+  T   ++  L   GRI EA NLL Q M ++GY    V
Sbjct: 410 GKVFEANNLLHEMISNN-CSPNTYTCNVLLHSLWKEGRISEAENLL-QKMNEKGYGVDTV 467

Query: 353 TYNAVLRGLFRLRRVEEAKEVFNCM-------LG------IGVVADS----------TTY 389
           T N ++  L    ++++A E+ N M       LG      IG+V D+           TY
Sbjct: 468 TCNIIINALCNNGQLDKAIEIVNGMWTHGSAALGNLGNSFIGLVDDTISGKKCTPDLVTY 527

Query: 390 AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449
           + +I GLC++ +LD+AK+ + +++      D+ +Y   I   CR GKI  A   L ++  
Sbjct: 528 STIISGLCKAGRLDDAKKKFIEMMSKGLQPDSAIYDTFIHSFCREGKISSAFQVLKDMEK 587

Query: 450 SGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW-RILDKL-HGNRGND 507
            G    +  YN +I G    +   E Y ++ EMR+ G++PD  T+  +L+ L  G R ND
Sbjct: 588 RGCNKTLQTYNSLILGLGSKNQIFELYGLIDEMREKGVSPDVCTYNHMLNCLCEGGRIND 647



 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 132/499 (26%), Positives = 229/499 (45%), Gaps = 36/499 (7%)

Query: 27  PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVL 86
           P++  Y  L+    R   +++   ++ +M    V P + T+++L+  +  +  +E A  L
Sbjct: 110 PSIYLYNVLLKSCIRENRVELVSWLYKDMVLARVSPEAYTFNLLIGLLCDSGHLEDAREL 169

Query: 87  MFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMI 146
             K+  R  E      N   F  LV   CR G  ++   +   M     +        +I
Sbjct: 170 FDKMPARGCEP-----NEFTFGILVRGYCRAGLASKGLELLGQMRTMGILPNNVLYNTLI 224

Query: 147 DSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQL-----LEEGI 201
            S C+ G+ H A ++V  MR+ GL P + ++NS +  LC  G  + A ++     ++E +
Sbjct: 225 SSFCKEGKTHDAEKLVDKMREDGLVPHVETFNSRISALCGSGKILEASRIFRDMQIDEEL 284

Query: 202 QFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPT 261
              + P+  TYK+++ G C E  LE+A+ ++  M    +       NI+L  L       
Sbjct: 285 GLPH-PNVITYKLMLMGFCKEGMLEEAKTLVDTMKRNANFINLESYNIWLLGLIRNGKLL 343

Query: 262 ELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTI 321
           E   VL  ML    +PD+ + N V++G CK G + +A  ++  M+      PD VT++T+
Sbjct: 344 EAWIVLKEMLGIGIEPDIYSYNIVMDGLCKNGMLSDARMLMGLMIRNGIL-PDTVTYSTL 402

Query: 322 IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG 381
           + G  + G++ EA NLL++ M     SP   T N +L  L++  R+ EA+ +   M   G
Sbjct: 403 LHGYCSKGKVFEANNLLHE-MISNNCSPNTYTCNVLLHSLWKEGRISEAENLLQKMNEKG 461

Query: 382 VVADSTTYAIVIDGLCESNQLDEA----KRFW-------------------DDIVWPSNI 418
              D+ T  I+I+ LC + QLD+A       W                   D I      
Sbjct: 462 YGVDTVTCNIIINALCNNGQLDKAIEIVNGMWTHGSAALGNLGNSFIGLVDDTISGKKCT 521

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI 478
            D   Y+ +I GLC++G++ +A     E++  G+ P+   Y+  I   C+      A+Q+
Sbjct: 522 PDLVTYSTIISGLCKAGRLDDAKKKFIEMMSKGLQPDSAIYDTFIHSFCREGKISSAFQV 581

Query: 479 LREMRKNGLNPDAVTWRIL 497
           L++M K G N    T+  L
Sbjct: 582 LKDMEKRGCNKTLQTYNSL 600



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 158/639 (24%), Positives = 267/639 (41%), Gaps = 138/639 (21%)

Query: 6   GLSRVGEAHK---LFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           G  R G A K   L   M++ G +PN V Y TLI  +C+ G+   A K+ D+MR  G++P
Sbjct: 191 GYCRAGLASKGLELLGQMRTMGILPNNVLYNTLISSFCKEGKTHDAEKLVDKMREDGLVP 250

Query: 63  NSLTYSVLVRGVLRT----------RDVE--------RANVLMFKLW------ERMKEEE 98
           +  T++  +  +  +          RD++          NV+ +KL       E M EE 
Sbjct: 251 HVETFNSRISALCGSGKILEASRIFRDMQIDEELGLPHPNVITYKLMLMGFCKEGMLEEA 310

Query: 99  DLSVN----NAAFANLVD------SLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDS 148
              V+    NA F NL         L R G + E + + ++M       + ++   ++D 
Sbjct: 311 KTLVDTMKRNANFINLESYNIWLLGLIRNGKLLEAWIVLKEMLGIGIEPDIYSYNIVMDG 370

Query: 149 LCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPS 208
           LC++G    A  ++ +M + G+ P  V+Y++++HG C  G    A  LL E I     P+
Sbjct: 371 LCKNGMLSDARMLMGLMIRNGILPDTVTYSTLLHGYCSKGKVFEANNLLHEMISNNCSPN 430

Query: 209 EHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALC---LIKNPTELLN 265
            +T  VL+  L  E  + +A  +LQ M  K     T  CNI + ALC    +    E++N
Sbjct: 431 TYTCNVLLHSLWKEGRISEAENLLQKMNEKGYGVDTVTCNIIINALCNNGQLDKAIEIVN 490

Query: 266 --------------------VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM 305
                               V   +   +C PD++T +T+I+G CK GR+++A K   +M
Sbjct: 491 GMWTHGSAALGNLGNSFIGLVDDTISGKKCTPDLVTYSTIISGLCKAGRLDDAKKKFIEM 550

Query: 306 VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQV------------------------ 341
           ++ K   PD+  + T I      G+I  A  +L  +                        
Sbjct: 551 MS-KGLQPDSAIYDTFIHSFCREGKISSAFQVLKDMEKRGCNKTLQTYNSLILGLGSKNQ 609

Query: 342 ----------MPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAI 391
                     M ++G SP + TYN +L  L    R+ +A  V + ML  G+  + +++ I
Sbjct: 610 IFELYGLIDEMREKGVSPDVCTYNHMLNCLCEGGRINDAPSVLDEMLQKGISPNISSFRI 669

Query: 392 VIDGLCES----------------------------------NQLDEAKRFWDDIVWPSN 417
           +I   C++                                   ++ EAK  ++  +  S 
Sbjct: 670 LIKAFCKACDFKASHEVFEIALNVCGHKEALYTLMFNELLVGGKVAEAKELFETALDRSF 729

Query: 418 IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQ 477
              N++Y  +I  LC+  K+  A   L+ L+D G   +   +  VIDG  K+  K  A +
Sbjct: 730 DIGNFLYKDLIDRLCKDEKLEAASDVLHRLIDKGYQFDPASFMPVIDGFGKMGNKHVADE 789

Query: 478 ILREM--------RKNGLNPDAVTWRILDKLHGNRGNDF 508
           +   M        ++N   P+ V   IL   + + GND+
Sbjct: 790 LAERMMEMASESNKENKAYPN-VKGHILRNKNKDAGNDW 827



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 83/301 (27%), Positives = 146/301 (48%), Gaps = 10/301 (3%)

Query: 207 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 266
           PS + Y VL++    E+ +E    + + M+  +        N+ +  LC   +  +   +
Sbjct: 110 PSIYLYNVLLKSCIRENRVELVSWLYKDMVLARVSPEAYTFNLLIGLLCDSGHLEDAREL 169

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
              M    C+P+  T   ++ G+C+ G   + L++L  M       P+ V + T+I    
Sbjct: 170 FDKMPARGCEPNEFTFGILVRGYCRAGLASKGLELLGQMRTMGIL-PNNVLYNTLISSFC 228

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCM-----LGIG 381
             G+  +A  L+ + M + G  P + T+N+ +  L    ++ EA  +F  M     LG+ 
Sbjct: 229 KEGKTHDAEKLVDK-MREDGLVPHVETFNSRISALCGSGKILEASRIFRDMQIDEELGL- 286

Query: 382 VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAV 441
              +  TY +++ G C+   L+EAK   D +   +N  +   Y   + GL R+GK+ EA 
Sbjct: 287 PHPNVITYKLMLMGFCKEGMLEEAKTLVDTMKRNANFINLESYNIWLLGLIRNGKLLEAW 346

Query: 442 HFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLH 501
             L E++  G+ P+I  YN+V+DG CK  M  +A  ++  M +NG+ PD VT+  L  LH
Sbjct: 347 IVLKEMLGIGIEPDIYSYNIVMDGLCKNGMLSDARMLMGLMIRNGILPDTVTYSTL--LH 404

Query: 502 G 502
           G
Sbjct: 405 G 405


>gi|297846140|ref|XP_002890951.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297336793|gb|EFH67210.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 689

 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 141/504 (27%), Positives = 238/504 (47%), Gaps = 36/504 (7%)

Query: 24  GHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERA 83
           G  PNVV++ TLI+G+C+ GEMD A+++F  M   G+ P+ + YS L+ G  +   +   
Sbjct: 173 GPAPNVVTFCTLINGFCKRGEMDRAFELFKVMEQRGIAPDLIAYSTLIDGYFKAGMLGMG 232

Query: 84  NVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP-QGKSVNEEFAC 142
           + L  +   +      + ++   F++ +D   + GY+   F + + M  QG S N     
Sbjct: 233 HKLFSQALHK-----GVKLDVVVFSSTIDVYVKFGYLTTAFDVYKRMLCQGISPNV-VTY 286

Query: 143 GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQ 202
             +I  LC+ GR + A  +   + KRGL PS+V+Y+S++ G CK+G     + L E+ I+
Sbjct: 287 TILIKGLCQDGRIYEAFGIYCQILKRGLEPSVVTYSSLIDGFCKYGNLRSGFALYEDMIK 346

Query: 203 FGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTE 262
            GY P    Y VLV+GLC +  +  A +     L +       + N  +   C +    E
Sbjct: 347 MGYPPDVVIYGVLVDGLCKQGLMLHALRFSVKTLGQSIRPNVVVFNSLIDGWCRLNRCDE 406

Query: 263 LLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTII 322
            L V   M     +PDV T+ T++      GR++E L +   M       PDAV F T++
Sbjct: 407 ALKVFRLMGIYGIKPDVATITTLMRVTVMEGRLKEGLFLFFRMFKMGL-EPDAVAFCTLM 465

Query: 323 FGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGV 382
                  +    L L + +M +      I   N V+  LF+ + VEEA + FN +L   +
Sbjct: 466 DAFCKNMKPTIGLQL-FDLMQRNKIPADIAVCNVVINLLFKGQSVEEASKFFNNLLEGKM 524

Query: 383 VADSTTYAIVIDGLCESNQLDEAKRFWDDIVW----PSNIHDNYVYAAMIK--------- 429
             D  TY  +I G C   +LDEA R ++ + +    P+ +    +   + K         
Sbjct: 525 EPDIVTYNTMICGYCSLRRLDEAARIFEMLKFTPFGPNAVTLTILIHTLCKNSDMDGALR 584

Query: 430 --------------GLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREA 475
                         GLC+ G++ EA +  ++ +D+ + P++V Y ++I G CK+    EA
Sbjct: 585 IISPSIISYSIIIDGLCKRGRVDEATNIFHQAIDAKILPDVVAYAILIRGCCKVGRLVEA 644

Query: 476 YQILREMRKNGLNPDAVTWRILDK 499
             +   M +NG+ PD +  R L +
Sbjct: 645 ALLYEHMLRNGVKPDDLLQRALSE 668



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 103/386 (26%), Positives = 172/386 (44%), Gaps = 53/386 (13%)

Query: 112 DSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLT 171
           D LCR G V          P G S     A G ++D+L R G    A     ++ +RG  
Sbjct: 97  DKLCRGGTV----------PFGVS-----AHGFVLDALFRKGEVTKALDFHRLVMERGFR 141

Query: 172 PSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKV 231
             +VS N I+ GL        A ++L   +  G  P+  T+  L+ G C   ++++A   
Sbjct: 142 VDIVSCNKILKGLSVD-QIEVASRMLSLVLDCGPAPNVVTFCTLINGFCKRGEMDRA--- 197

Query: 232 LQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK 291
                                         EL  V   M Q    PD+I  +T+I+G+ K
Sbjct: 198 -----------------------------FELFKV---MEQRGIAPDLIAYSTLIDGYFK 225

Query: 292 MGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGI 351
            G +    K+ +  +  K    D V F++ I   +  G +  A + +Y+ M  +G SP +
Sbjct: 226 AGMLGMGHKLFSQALH-KGVKLDVVVFSSTIDVYVKFGYLTTAFD-VYKRMLCQGISPNV 283

Query: 352 VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDD 411
           VTY  +++GL +  R+ EA  ++  +L  G+     TY+ +IDG C+   L      ++D
Sbjct: 284 VTYTILIKGLCQDGRIYEAFGIYCQILKRGLEPSVVTYSSLIDGFCKYGNLRSGFALYED 343

Query: 412 IVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSM 471
           ++      D  +Y  ++ GLC+ G +  A+ F  + +   + PN+V +N +IDG C+L+ 
Sbjct: 344 MIKMGYPPDVVIYGVLVDGLCKQGLMLHALRFSVKTLGQSIRPNVVVFNSLIDGWCRLNR 403

Query: 472 KREAYQILREMRKNGLNPDAVTWRIL 497
             EA ++ R M   G+ PD  T   L
Sbjct: 404 CDEALKVFRLMGIYGIKPDVATITTL 429



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 96/411 (23%), Positives = 176/411 (42%), Gaps = 52/411 (12%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R+ EA  ++  +  RG  P+VV+Y++LI G+C+ G +   + ++++M   G  P+
Sbjct: 293 LCQDGRIYEAFGIYCQILKRGLEPSVVTYSSLIDGFCKYGNLRSGFALYEDMIKMGYPPD 352

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            + Y V                                        LVD LC++G +   
Sbjct: 353 VVIYGV----------------------------------------LVDGLCKQGLMLHA 372

Query: 124 FRIAEDMPQGKSVNEEFAC-GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
            R +     G+S+         +ID  CR  R   A +V  +M   G+ P + +  +++ 
Sbjct: 373 LRFSVKT-LGQSIRPNVVVFNSLIDGWCRLNRCDEALKVFRLMGIYGIKPDVATITTLMR 431

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
                G       L     + G  P    +  L++  C         ++   M   K   
Sbjct: 432 VTVMEGRLKEGLFLFFRMFKMGLEPDAVAFCTLMDAFCKNMKPTIGLQLFDLMQRNKIPA 491

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
              +CN+ +  L   ++  E       +L+ + +PD++T NT+I G+C + R++EA ++ 
Sbjct: 492 DIAVCNVVINLLFKGQSVEEASKFFNNLLEGKMEPDIVTYNTMICGYCSLRRLDEAARIF 551

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
             +    F  P+AVT T +I  L     +  AL         R  SP I++Y+ ++ GL 
Sbjct: 552 EMLKFTPF-GPNAVTLTILIHTLCKNSDMDGAL---------RIISPSIISYSIIIDGLC 601

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413
           +  RV+EA  +F+  +   ++ D   YAI+I G C+  +L EA   ++ ++
Sbjct: 602 KRGRVDEATNIFHQAIDAKILPDVVAYAILIRGCCKVGRLVEAALLYEHML 652



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 74/333 (22%), Positives = 132/333 (39%), Gaps = 48/333 (14%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEM--------------- 45
           +D  C    +     L+ DM   G+ P+VV Y  L+ G C+ G M               
Sbjct: 325 IDGFCKYGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGLCKQGLMLHALRFSVKTLGQSI 384

Query: 46  --------------------DVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANV 85
                               D A KVF  M   G+ P+  T + L+R  +    ++    
Sbjct: 385 RPNVVVFNSLIDGWCRLNRCDEALKVFRLMGIYGIKPDVATITTLMRVTVMEGRLKEGLF 444

Query: 86  LMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHM 145
           L F+++ +M  E D      AF  L+D+ C+        ++ + M + K   +   C  +
Sbjct: 445 LFFRMF-KMGLEPD----AVAFCTLMDAFCKNMKPTIGLQLFDLMQRNKIPADIAVCNVV 499

Query: 146 IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY 205
           I+ L +      AS+    + +  + P +V+YN+++ G C       A ++ E      +
Sbjct: 500 INLLFKGQSVEEASKFFNNLLEGKMEPDIVTYNTMICGYCSLRRLDEAARIFEMLKFTPF 559

Query: 206 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 265
            P+  T  +L+  LC  SD++ A +++   +    +            LC      E  N
Sbjct: 560 GPNAVTLTILIHTLCKNSDMDGALRIISPSIISYSIIID--------GLCKRGRVDEATN 611

Query: 266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
           +    +  +  PDV+    +I G CK+GR+ EA
Sbjct: 612 IFHQAIDAKILPDVVAYAILIRGCCKVGRLVEA 644



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 111/229 (48%), Gaps = 6/229 (2%)

Query: 285 VINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ 344
           V++   + G + +AL   + +V  +    D V+   I+ GL +V +I+ A  +L  V+  
Sbjct: 115 VLDALFRKGEVTKALD-FHRLVMERGFRVDIVSCNKILKGL-SVDQIEVASRMLSLVL-D 171

Query: 345 RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 404
            G +P +VT+  ++ G  +   ++ A E+F  M   G+  D   Y+ +IDG  ++  L  
Sbjct: 172 CGPAPNVVTFCTLINGFCKRGEMDRAFELFKVMEQRGIAPDLIAYSTLIDGYFKAGMLGM 231

Query: 405 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
             + +   +      D  V+++ I    + G +  A      ++  G++PN+V Y ++I 
Sbjct: 232 GHKLFSQALHKGVKLDVVVFSSTIDVYVKFGYLTTAFDVYKRMLCQGISPNVVTYTILIK 291

Query: 465 GACKLSMKREAYQILREMRKNGLNPDAVTW-RILDKL--HGNRGNDFGL 510
           G C+     EA+ I  ++ K GL P  VT+  ++D    +GN  + F L
Sbjct: 292 GLCQDGRIYEAFGIYCQILKRGLEPSVVTYSSLIDGFCKYGNLRSGFAL 340



 Score = 43.5 bits (101), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 34/69 (49%)

Query: 2   DQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVL 61
           D LC   RV EA  +F        +P+VV+Y  LI G C+ G +  A  +++ M   GV 
Sbjct: 598 DGLCKRGRVDEATNIFHQAIDAKILPDVVAYAILIRGCCKVGRLVEAALLYEHMLRNGVK 657

Query: 62  PNSLTYSVL 70
           P+ L    L
Sbjct: 658 PDDLLQRAL 666


>gi|79317869|ref|NP_001031033.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75178969|sp|Q9LPX2.1|PPR39_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12775, mitochondrial; Flags: Precursor
 gi|8698724|gb|AAF78482.1|AC012187_2 Contains similarity to an unknown protein F16M19.7 gi|6598837 from
           Arabidopsis thaliana BAC F16M19 gb|AC010795 and contains
           multiple PPR PF|01535 repeats. EST gb|AI999079 comes
           from this gene [Arabidopsis thaliana]
 gi|332190806|gb|AEE28927.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 644

 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 129/497 (25%), Positives = 239/497 (48%), Gaps = 42/497 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   RV EA +L   M   GH P +++  TL++G C  G++  A  + D M   G 
Sbjct: 165 LNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGF 224

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +TY  ++  + ++     A  L+ K+     EE ++ ++   ++ ++D LC++G +
Sbjct: 225 QPNEVTYGPVLNVMCKSGQTALAMELLRKM-----EERNIKLDAVKYSIIIDGLCKDGSL 279

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +  F +  +M       +      +I   C +GR    ++++  M KR ++P++V+++ +
Sbjct: 280 DNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVL 339

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +    K G    A QLL+E +Q G  P+  TY  L++G C E+ LE+A +++  M+SK  
Sbjct: 340 IDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISK-- 397

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                             C PD++T N +ING+CK  RI++ L+
Sbjct: 398 ---------------------------------GCDPDIMTFNILINGYCKANRIDDGLE 424

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +  +M      A + VT+ T++ G    G+++ A   L+Q M  R   P IV+Y  +L G
Sbjct: 425 LFREMSLRGVIA-NTVTYNTLVQGFCQSGKLEVA-KKLFQEMVSRRVRPDIVSYKILLDG 482

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L     +E+A E+F  +    +  D   Y I+I G+C ++++D+A   +  +       D
Sbjct: 483 LCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLD 542

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              Y  MI  LCR   + +A     ++ + G  P+ + YN++I           A +++ 
Sbjct: 543 ARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRAHLGDDDATTAAELIE 602

Query: 481 EMRKNGLNPDAVTWRIL 497
           EM+ +G   D  T +++
Sbjct: 603 EMKSSGFPADVSTVKMV 619



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 130/482 (26%), Positives = 241/482 (50%), Gaps = 7/482 (1%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M+S+G   ++ + + +I+ +CR  ++  A+    ++   G  P+++ ++ L+ G+     
Sbjct: 114 MESKGIAHSIYTLSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECR 173

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
           V  A  L+ ++ E   +   +++N      LV+ LC  G V++   + + M +      E
Sbjct: 174 VSEALELVDRMVEMGHKPTLITLNT-----LVNGLCLNGKVSDAVVLIDRMVETGFQPNE 228

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
              G +++ +C+SG+   A  ++  M +R +    V Y+ I+ GLCK G    A+ L  E
Sbjct: 229 VTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNE 288

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
               G+     TY  L+ G C     +   K+L+ M+ +K        ++ + +      
Sbjct: 289 MEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGK 348

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
             E   +L  M+Q    P+ IT N++I+GFCK  R+EEA++++ D++  K C PD +TF 
Sbjct: 349 LREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMV-DLMISKGCDPDIMTFN 407

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
            +I G     RI + L L ++ M  RG     VTYN +++G  +  ++E AK++F  M+ 
Sbjct: 408 ILINGYCKANRIDDGLEL-FREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVS 466

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
             V  D  +Y I++DGLC++ +L++A   +  I       D  +Y  +I G+C + K+ +
Sbjct: 467 RRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDD 526

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
           A      L   GV  +   YN++I   C+     +A  + R+M + G  PD +T+ IL +
Sbjct: 527 AWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIR 586

Query: 500 LH 501
            H
Sbjct: 587 AH 588



 Score =  192 bits (487), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 125/494 (25%), Positives = 235/494 (47%), Gaps = 44/494 (8%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           +  +A  LF DM     +P V+ +  L     +T + ++   +  +M   G+  +  T S
Sbjct: 68  KADDAVDLFRDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLS 127

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
           +++    R R +  A   M K+  ++  E D  +    F  L++ LC E  V+E   + +
Sbjct: 128 IMINCFCRCRKLSYAFSTMGKIM-KLGYEPDTVI----FNTLLNGLCLECRVSEALELVD 182

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
            M +            +++ LC +G+   A  ++  M + G  P+ V+Y  +++ +CK G
Sbjct: 183 RMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSG 242

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
               A +LL +  +         Y ++++GLC +  L+ A                    
Sbjct: 243 QTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNA-------------------- 282

Query: 249 IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 308
                           N+   M     + D+IT NT+I GFC  GR ++  K+L DM+  
Sbjct: 283 ---------------FNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKR 327

Query: 309 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE 368
           K  +P+ VTF+ +I   +  G+++EA  LL ++M QRG +P  +TYN+++ G  +  R+E
Sbjct: 328 KI-SPNVVTFSVLIDSFVKEGKLREADQLLKEMM-QRGIAPNTITYNSLIDGFCKENRLE 385

Query: 369 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI 428
           EA ++ + M+  G   D  T+ I+I+G C++N++D+    + ++     I +   Y  ++
Sbjct: 386 EAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLV 445

Query: 429 KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLN 488
           +G C+SGK+  A     E+V   V P+IV Y +++DG C      +A +I  ++ K+ + 
Sbjct: 446 QGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKME 505

Query: 489 PDAVTWRILDKLHG 502
            D   + I+  +HG
Sbjct: 506 LDIGIYMII--IHG 517



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 97/410 (23%), Positives = 191/410 (46%), Gaps = 45/410 (10%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    +  A  LF +M+ +G   ++++Y TLI G+C  G  D   K+  +M    +
Sbjct: 270 IDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKI 329

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +T+SVL+   ++   +  A+ L+ ++ +R      ++ N   + +L+D  C+E  +
Sbjct: 330 SPNVVTFSVLIDSFVKEGKLREADQLLKEMMQR-----GIAPNTITYNSLIDGFCKENRL 384

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E  ++ + M       +      +I+  C++ R      +   M  RG+  + V+YN++
Sbjct: 385 EEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTL 444

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           V G C+ G    A +L +E +     P   +YK+L++GLC   +LEKA ++         
Sbjct: 445 VQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFG------K 498

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           ++++++                 L++ ++M+             +I+G C   ++++A  
Sbjct: 499 IEKSKM----------------ELDIGIYMI-------------IIHGMCNASKVDDAWD 529

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +   +   K    DA  +  +I  L     + +A ++L++ M + G++P  +TYN ++R 
Sbjct: 530 LFCSLPL-KGVKLDARAYNIMISELCRKDSLSKA-DILFRKMTEEGHAPDELTYNILIRA 587

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD 410
                    A E+   M   G  AD +T  +VI+ L  S +LD  K F D
Sbjct: 588 HLGDDDATTAAELIEEMKSSGFPADVSTVKMVINML-SSGELD--KSFLD 634


>gi|449513353|ref|XP_004164304.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g06920-like [Cucumis sativus]
          Length = 904

 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 134/490 (27%), Positives = 236/490 (48%), Gaps = 8/490 (1%)

Query: 16  LFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVL 75
           LF  M+  G+  NV  +TTLI  + R G +D A  + DEM+   + P+ + Y+V +    
Sbjct: 222 LFQQMQELGYAVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFG 281

Query: 76  RTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKS 135
           +   V+ A    +K +  MK    L +++  + +++  LC+   +NE   + E M Q K 
Sbjct: 282 KAGKVDMA----WKXFHEMK-ANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQ 336

Query: 136 VNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQ 195
           V   +A   MI     +G+   A  ++   R++G  PS+VSYN I+  L + G    A +
Sbjct: 337 VPCAYAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALK 396

Query: 196 LLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALC 255
             EE ++   +P+  TY ++++ LC    LE A  V   M            NI +  LC
Sbjct: 397 KFEE-MKKDAIPNLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLC 455

Query: 256 LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA 315
             +   +  ++   +    C+PD +T  ++I G  + GR++EA K+   M+      P+A
Sbjct: 456 KAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDAN-QIPNA 514

Query: 316 VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN 375
           V +T++I      GR ++  + +Y  M + G SP ++  N  +  +F+   +E+ + +F 
Sbjct: 515 VVYTSLIRNFFKCGRKEDG-HKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQ 573

Query: 376 CMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG 435
            +  +G + D+ +Y I+I GL ++    EA   +  +     + D   Y  +I G C+SG
Sbjct: 574 EIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSG 633

Query: 436 KIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWR 495
           K+++A   L E+   G  P +V Y  VIDG  K+    EAY +  E +  G+  + V + 
Sbjct: 634 KVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYS 693

Query: 496 ILDKLHGNRG 505
            L    G  G
Sbjct: 694 SLIDGFGKVG 703



 Score =  191 bits (486), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 126/494 (25%), Positives = 236/494 (47%), Gaps = 9/494 (1%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           +V EA K F +MK +  +PN+ +Y  +I   C+ G+++ A  V D M+  G+ PN +T +
Sbjct: 390 QVDEALKKFEEMK-KDAIPNLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVN 448

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
           ++V  + + + ++ A  +   L     + +    +   + +L++ L R G V+E +++ E
Sbjct: 449 IMVDRLCKAQRLDDACSIFEGL-----DHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYE 503

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
            M     +        +I +  + GR     ++   M + G +P L+  N+ +  + K G
Sbjct: 504 QMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAG 563

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
              +   L +E    G++P   +Y +L+ GL       +A ++   M  +  V  TR  N
Sbjct: 564 EIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYN 623

Query: 249 IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 308
             +   C      +   +L  M     +P V+T  +VI+G  K+ R++EA  +L +    
Sbjct: 624 TVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAY-MLFEEAKS 682

Query: 309 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE 368
           K    + V ++++I G   VGRI EA  ++ ++M Q+G +P + T+N +L  L +   + 
Sbjct: 683 KGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELM-QKGLTPNVYTWNCLLDALVKAEEIS 741

Query: 369 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI 428
           EA   F  M  +    +  TY+I+I GLC+  + ++A  FW ++       + + Y  MI
Sbjct: 742 EALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMI 801

Query: 429 KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLN 488
            GL ++G I EA     +  + G   +   YN +I+G    +   +AY++  E R  G +
Sbjct: 802 SGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLSNANRASDAYRLFEEARLKGCS 861

Query: 489 PDAVTWRI-LDKLH 501
               T  + LD LH
Sbjct: 862 IYTKTCVVLLDSLH 875



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 130/507 (25%), Positives = 233/507 (45%), Gaps = 16/507 (3%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R+ EA +LF  M     VP   +Y T+I GY   G+ + AY + +  R  G +P+
Sbjct: 315 LCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIPS 374

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            ++Y+ ++  + R   V+ A     K +E MK+  D   N + +  ++D LC+ G +   
Sbjct: 375 VVSYNCILSCLGRKGQVDEA----LKKFEEMKK--DAIPNLSTYNIMIDMLCKAGKLETA 428

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             + + M              M+D LC++ R   A  +   +  +   P  V+Y S++ G
Sbjct: 429 LVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEG 488

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGL--CGESDLEKARKVLQFMLSKKDV 241
           L +HG    AY+L E+ +    +P+   Y  L+     CG    E   K+   ML     
Sbjct: 489 LGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRK--EDGHKIYNEMLRLGCS 546

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVF--MLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
               + N Y+   C+ K         +F  +      PD  +   +I+G  K G   EA 
Sbjct: 547 PDLLLLNTYMD--CVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAY 604

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           ++   M   + C  D   + T+I G    G++ +A  LL + M  +G+ P +VTY +V+ 
Sbjct: 605 ELFYTM-KEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEE-MKTKGHEPTVVTYGSVID 662

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
           GL ++ R++EA  +F      G+  +   Y+ +IDG  +  ++DEA    ++++      
Sbjct: 663 GLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTP 722

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           + Y +  ++  L ++ +I EA+     + D   TPN + Y+++I G CK+    +A+   
Sbjct: 723 NVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFW 782

Query: 480 REMRKNGLNPDAVTWRILDKLHGNRGN 506
           +EM+K G  P+  T+  +       GN
Sbjct: 783 QEMQKQGFKPNVFTYTTMISGLAKAGN 809



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 106/411 (25%), Positives = 204/411 (49%), Gaps = 7/411 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D+LC   R+ +A  +F  +  +   P+ V+Y +LI G  R G +D AYK++++M     
Sbjct: 451 VDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQ 510

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +PN++ Y+ L+R   +    E  + +  ++  R+    DL + N      +D + + G +
Sbjct: 511 IPNAVVYTSLIRNFFKCGRKEDGHKIYNEML-RLGCSPDLLLLN----TYMDCVFKAGEI 565

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +   + +++     + +  +   +I  L ++G  H A  + Y M+++G      +YN++
Sbjct: 566 EKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTV 625

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G CK G   +AYQLLEE    G+ P+  TY  +++GL     L++A  + +   SK  
Sbjct: 626 IDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGI 685

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                I +  +     +    E   ++  ++Q    P+V T N +++   K   I EAL 
Sbjct: 686 ELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALV 745

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
               M   K C P+ +T++ +I GL  + +  +A  + +Q M ++G+ P + TY  ++ G
Sbjct: 746 CFQSMKDLK-CTPNYITYSILIHGLCKIRKFNKAF-VFWQEMQKQGFKPNVFTYTTMISG 803

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDD 411
           L +   + EA  +F      G VADS  Y  +I+GL  +N+  +A R +++
Sbjct: 804 LAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLSNANRASDAYRLFEE 854



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 102/475 (21%), Positives = 202/475 (42%), Gaps = 51/475 (10%)

Query: 66  TYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLS---VNNAAFANLVDSLCREGYVNE 122
            Y+ L+  + RTR         F   E++ EE  ++    +N     +V S  +   + E
Sbjct: 132 AYNSLLMVMARTRK--------FNCLEQILEEMSIAGFGPSNNTCIEIVLSFIKSRKLRE 183

Query: 123 VFRIAEDMPQGK---------------SVNEEFACG----------------HMIDSL-- 149
            F   + M + K               S + +  C                 H+  +L  
Sbjct: 184 AFTFIQTMRKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIR 243

Query: 150 --CRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLP 207
              R GR   A  ++  M+   L P +V YN  +    K G    A++   E    G + 
Sbjct: 244 VFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKXFHEMKANGLVL 303

Query: 208 SEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVL 267
            + TY  ++  LC    L +A ++ + M   K V      N  +    +     +  ++L
Sbjct: 304 DDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLL 363

Query: 268 VFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLN 327
               +  C P V++ N +++   + G+++EALK   +M   K   P+  T+  +I  L  
Sbjct: 364 ERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEM--KKDAIPNLSTYNIMIDMLCK 421

Query: 328 VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADST 387
            G+++ AL ++   M   G  P ++T N ++  L + +R+++A  +F  +       D+ 
Sbjct: 422 AGKLETAL-VVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAV 480

Query: 388 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYEL 447
           TY  +I+GL    ++DEA + ++ ++  + I +  VY ++I+   + G+  +      E+
Sbjct: 481 TYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEM 540

Query: 448 VDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
           +  G +P+++  N  +D   K     +   + +E++  G  PDA ++ IL  +HG
Sbjct: 541 LRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTIL--IHG 593



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 124/254 (48%), Gaps = 5/254 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C   +V +A++L  +MK++GH P VV+Y ++I G  +   +D AY +F+E +  G+
Sbjct: 626 IDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGI 685

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             N + YS L+ G  +   ++ A ++M +L ++      L+ N   +  L+D+L +   +
Sbjct: 686 ELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQK-----GLTPNVYTWNCLLDALVKAEEI 740

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E     + M   K          +I  LC+  + + A      M+K+G  P++ +Y ++
Sbjct: 741 SEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTM 800

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GL K G  + A  L E+  + G +     Y  ++EGL   +    A ++ +    K  
Sbjct: 801 ISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLSNANRASDAYRLFEEARLKGC 860

Query: 241 VDRTRICNIYLRAL 254
              T+ C + L +L
Sbjct: 861 SIYTKTCVVLLDSL 874



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 64/277 (23%), Positives = 120/277 (43%), Gaps = 7/277 (2%)

Query: 234 FMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQC----QPDVITLNTVINGF 289
           F  +++  DR   C     +L ++   T   N L  +L+        P   T   ++  F
Sbjct: 117 FRWAERLTDRAH-CREAYNSLLMVMARTRKFNCLEQILEEMSIAGFGPSNNTCIEIVLSF 175

Query: 290 CKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSP 349
            K  ++ EA   +  M   KF  P    +T +I G L+  R  + +  L+Q M + GY+ 
Sbjct: 176 IKSRKLREAFTFIQTMRKLKF-RPAFSAYTNLI-GALSTSRDSDCMLTLFQQMQELGYAV 233

Query: 350 GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFW 409
            +  +  ++R   R  RV+ A  + + M    +  D   Y + ID   ++ ++D A + +
Sbjct: 234 NVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKXF 293

Query: 410 DDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKL 469
            ++     + D+  Y +MI  LC++ +++EAV     +  +   P    YN +I G    
Sbjct: 294 HEMKANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMA 353

Query: 470 SMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
               +AY +L   R+ G  P  V++  +    G +G 
Sbjct: 354 GKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQ 390



 Score = 39.3 bits (90), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 3/97 (3%)

Query: 4   LCGLSRVG---EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           + GL++ G   EA  LF   K +G V +   Y  +I G         AY++F+E R  G 
Sbjct: 801 ISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLSNANRASDAYRLFEEARLKGC 860

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEE 97
              + T  VL+  + +   +E+A ++   L E  K +
Sbjct: 861 SIYTKTCVVLLDSLHKAECIEQAAIVGAVLRETAKAQ 897


>gi|413915966|gb|AFW55898.1| hypothetical protein ZEAMMB73_909442, partial [Zea mays]
          Length = 694

 Score =  202 bits (514), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 142/508 (27%), Positives = 236/508 (46%), Gaps = 46/508 (9%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    + EA  LF  MK+ G  P+VV+Y +LI GY + GE++    +  EMR  G 
Sbjct: 206 IDFLCKQGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGELEEVELLVSEMRKSGC 265

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             + +TY+ L+    +   +E+A    +  +  MK                    R G +
Sbjct: 266 AADVVTYNALINCFSKFGWIEKA----YSYFGEMK--------------------RLGVM 301

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
             V  ++                  +D+ C+ G    A ++   MR RG+ P+  +Y S+
Sbjct: 302 ANVVTLST----------------FVDAFCKEGLVREAMKLFAQMRVRGMMPNEFTYTSL 345

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           V G CK G    A  LL+E +  G +P+  TY V+V+GLC E  +  A  VL  M     
Sbjct: 346 VDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAVADDVLSLMERAGV 405

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                +    +    + KN    L++L  M     + DV    T+I G CK+ +++EA  
Sbjct: 406 KANELLYTTLIHGHFMNKNSERALDLLNEMKNKGMELDVSLYGTLIWGLCKVQKLDEAKS 465

Query: 301 VLNDMVAGKFCA--PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
           +L+ M     C   P+ V +TTI+      G+  EA+ LL+++ P  G  P +VTY A++
Sbjct: 466 LLHKM---DDCGLRPNTVIYTTIMDAFFKAGKESEAVALLHKI-PDSGLQPNVVTYCALI 521

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
            GL +   + EA   F+ M  +G+  +   Y  +IDG C+   L +A    +++V     
Sbjct: 522 DGLCKAGSIYEAISHFDKMRELGLDPNVQVYTTLIDGFCKIGSLSKAVHLMNEMVDKGMS 581

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI 478
            D  VY ++I G  + G +  A     +++++G+  ++ CY   I G C ++M +EA  +
Sbjct: 582 LDKVVYTSLIDGHMKQGDLQGAFALKAKMIETGLQLDLYCYTCFISGFCNMNMMQEARGV 641

Query: 479 LREMRKNGLNPDAVTWRILDKLHGNRGN 506
           L EM   G+ PD   +  L + +   GN
Sbjct: 642 LSEMIGTGITPDKTAYNCLIRKYQKLGN 669



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 111/442 (25%), Positives = 198/442 (44%), Gaps = 50/442 (11%)

Query: 10  VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSV 69
           + +A+  F +MK  G + NVV+ +T +  +C+ G +  A K+F +MR  G++PN  TY+ 
Sbjct: 285 IEKAYSYFGEMKRLGVMANVVTLSTFVDAFCKEGLVREAMKLFAQMRVRGMMPNEFTYTS 344

Query: 70  LVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAED 129
           LV G  +   ++ A VL+ ++       + L  N   +  +VD LC+EG V     +A+D
Sbjct: 345 LVDGTCKAGRLDDAIVLLDEMV-----HQGLVPNVVTYTVMVDGLCKEGKV----AVADD 395

Query: 130 MPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG 189
                                          V+ +M + G+  + + Y +++HG   +  
Sbjct: 396 -------------------------------VLSLMERAGVKANELLYTTLIHGHFMNKN 424

Query: 190 CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM----LSKKDVDRTR 245
             RA  LL E    G       Y  L+ GLC    L++A+ +L  M    L    V  T 
Sbjct: 425 SERALDLLNEMKNKGMELDVSLYGTLIWGLCKVQKLDEAKSLLHKMDDCGLRPNTVIYTT 484

Query: 246 ICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM 305
           I + + +A       +E + +L  +  +  QP+V+T   +I+G CK G I EA+   + M
Sbjct: 485 IMDAFFKA----GKESEAVALLHKIPDSGLQPNVVTYCALIDGLCKAGSIYEAISHFDKM 540

Query: 306 VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLR 365
                  P+   +TT+I G   +G + +A++L+ + M  +G S   V Y +++ G  +  
Sbjct: 541 RELGL-DPNVQVYTTLIDGFCKIGSLSKAVHLMNE-MVDKGMSLDKVVYTSLIDGHMKQG 598

Query: 366 RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYA 425
            ++ A  +   M+  G+  D   Y   I G C  N + EA+    +++      D   Y 
Sbjct: 599 DLQGAFALKAKMIETGLQLDLYCYTCFISGFCNMNMMQEARGVLSEMIGTGITPDKTAYN 658

Query: 426 AMIKGLCRSGKIHEAVHFLYEL 447
            +I+   + G + EA     E+
Sbjct: 659 CLIRKYQKLGNMEEASSLQNEM 680



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 97/371 (26%), Positives = 170/371 (45%), Gaps = 39/371 (10%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C    V EA KLF  M+ RG +PN  +YT+L+ G C+ G +D A  + DEM H G+
Sbjct: 311 VDAFCKEGLVREAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGL 370

Query: 61  LPNSLTYSVLVRGVLRTRDV----------ERANV--------------LMFKLWERM-- 94
           +PN +TY+V+V G+ +   V          ERA V               M K  ER   
Sbjct: 371 VPNVVTYTVMVDGLCKEGKVAVADDVLSLMERAGVKANELLYTTLIHGHFMNKNSERALD 430

Query: 95  ----KEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC 150
                + + + ++ + +  L+  LC+   ++E   +   M              ++D+  
Sbjct: 431 LLNEMKNKGMELDVSLYGTLIWGLCKVQKLDEAKSLLHKMDDCGLRPNTVIYTTIMDAFF 490

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
           ++G+   A  +++ +   GL P++V+Y +++ GLCK G    A    ++  + G  P+  
Sbjct: 491 KAGKESEAVALLHKIPDSGLQPNVVTYCALIDGLCKAGSIYEAISHFDKMRELGLDPNVQ 550

Query: 211 TYKVLVEGLCGESDLEKARKVLQFMLSK-KDVDRTRICNIYLRALCLIKNPTELLNVLVF 269
            Y  L++G C    L KA  ++  M+ K   +D+     +Y   +       +L      
Sbjct: 551 VYTTLIDGFCKIGSLSKAVHLMNEMVDKGMSLDKV----VYTSLIDGHMKQGDLQGAFAL 606

Query: 270 ---MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
              M++T  Q D+      I+GFC M  ++EA  VL++M+ G    PD   +  +I    
Sbjct: 607 KAKMIETGLQLDLYCYTCFISGFCNMNMMQEARGVLSEMI-GTGITPDKTAYNCLIRKYQ 665

Query: 327 NVGRIQEALNL 337
            +G ++EA +L
Sbjct: 666 KLGNMEEASSL 676



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/311 (28%), Positives = 153/311 (49%), Gaps = 12/311 (3%)

Query: 197 LEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN-IYLRALC 255
           L  G     LPS   +  L+  L     L+ A + L  +   +    TR CN I LR   
Sbjct: 123 LALGPHRSALPS--VFDTLLSLLADHGLLDDAVRALARVRQLRVPPNTRTCNHILLR--- 177

Query: 256 LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA 315
           L +N    L   +F  +    P+V T N VI+  CK G + EA  +   M A   C+PD 
Sbjct: 178 LARNRQGGLVRRLF--EHLPAPNVFTFNIVIDFLCKQGELVEARALFVRMKAMG-CSPDV 234

Query: 316 VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN 375
           VT+ ++I G    G ++E + LL   M + G +  +VTYNA++    +   +E+A   F 
Sbjct: 235 VTYNSLIDGYGKCGELEE-VELLVSEMRKSGCAADVVTYNALINCFSKFGWIEKAYSYFG 293

Query: 376 CMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG 435
            M  +GV+A+  T +  +D  C+   + EA + +  +     + + + Y +++ G C++G
Sbjct: 294 EMKRLGVMANVVTLSTFVDAFCKEGLVREAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAG 353

Query: 436 KIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWR 495
           ++ +A+  L E+V  G+ PN+V Y V++DG CK      A  +L  M + G+  + + + 
Sbjct: 354 RLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAVADDVLSLMERAGVKANELLYT 413

Query: 496 ILDKLHGNRGN 506
            L  +HG+  N
Sbjct: 414 TL--IHGHFMN 422



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 99/234 (42%), Gaps = 5/234 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC + ++ EA  L   M   G  PN V YTT++  + + G+   A  +  ++   G+ PN
Sbjct: 454 LCKVQKLDEAKSLLHKMDDCGLRPNTVIYTTIMDAFFKAGKESEAVALLHKIPDSGLQPN 513

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY  L+ G+ +   +  A       +++M+E   L  N   +  L+D  C+ G +++ 
Sbjct: 514 VVTYCALIDGLCKAGSIYEA----ISHFDKMREL-GLDPNVQVYTTLIDGFCKIGSLSKA 568

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             +  +M       ++     +ID   + G   GA  +   M + GL   L  Y   + G
Sbjct: 569 VHLMNEMVDKGMSLDKVVYTSLIDGHMKQGDLQGAFALKAKMIETGLQLDLYCYTCFISG 628

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
            C       A  +L E I  G  P +  Y  L+       ++E+A  +   M S
Sbjct: 629 FCNMNMMQEARGVLSEMIGTGITPDKTAYNCLIRKYQKLGNMEEASSLQNEMES 682


>gi|356529507|ref|XP_003533332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  202 bits (514), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 134/496 (27%), Positives = 243/496 (48%), Gaps = 9/496 (1%)

Query: 3   QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           Q   +  V +A   F  M    H P ++ +  ++  + +      A  +   +   G+ P
Sbjct: 33  QPPSIQNVDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKIKHYSTAVSLSHRLELKGIQP 92

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           + +T ++L+        +     ++ K+ +R  +   ++     F  L+  LC +G VN+
Sbjct: 93  DLITLNILINCFCHMGQITFGFSVLAKILKRGYQPHTIT-----FTTLIKGLCLKGQVNK 147

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
                + +       ++ + G +I+ +C+ G   GA ++V  +  R   P++  YN+I+ 
Sbjct: 148 ALHFHDKLLAQGIKFDQVSYGTLINGVCKIGDTRGAIKLVRKIDGRLTKPNVEMYNTIID 207

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
            LCK+     AY L  E    G      TY  L+ G C  S L++A  +L  M+ K    
Sbjct: 208 ALCKYQLVSEAYGLFSEMTAKGISADVVTYTTLIYGFCIASKLKEAIGLLNEMVLKTINP 267

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
                NI + ALC      E  NVL  ML+   +PDVIT +T+++G+  +  +++A  V 
Sbjct: 268 NVYTYNILVDALCKEGKVKEAKNVLAVMLKACVKPDVITYSTLMDGYFLVYELKKAQHVF 327

Query: 303 NDM-VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
           N M + G    PD  ++T +I G      + EALNL ++ M Q+   PGIVTY++++ GL
Sbjct: 328 NAMSLMG--VTPDVHSYTILINGFCKNKMVDEALNL-FKEMHQKNMVPGIVTYSSLIDGL 384

Query: 362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
            +  R+    ++ + M   G+ A+  TY  +IDGLC++  LD A   ++ +        +
Sbjct: 385 CKSGRISYVWDLIDEMRDRGIPANVITYNSLIDGLCKNGHLDRAIALFNKMKDQGIRPCS 444

Query: 422 YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
           + +  ++ GLC+ G++ +A     +L+  G   ++  YNV+I+G CK  +  EA  +L +
Sbjct: 445 FTFTILLDGLCKGGRLKDAQEAFQDLLTKGYHLDVYKYNVMINGHCKQGLLEEALTMLSK 504

Query: 482 MRKNGLNPDAVTWRIL 497
           M +NG  P+AVT+ I+
Sbjct: 505 MEENGCVPNAVTFDII 520



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 91/383 (23%), Positives = 163/383 (42%), Gaps = 42/383 (10%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    V EA+ LF +M ++G   +VV+YTTLI+G+C   ++  A  + +EM    +
Sbjct: 206 IDALCKYQLVSEAYGLFSEMTAKGISADVVTYTTLIYGFCIASKLKEAIGLLNEMVLKTI 265

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN  TY++LV                                        D+LC+EG V
Sbjct: 266 NPNVYTYNILV----------------------------------------DALCKEGKV 285

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E   +   M +     +      ++D          A  V   M   G+TP + SY  +
Sbjct: 286 KEAKNVLAVMLKACVKPDVITYSTLMDGYFLVYELKKAQHVFNAMSLMGVTPDVHSYTIL 345

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++G CK+     A  L +E  Q   +P   TY  L++GLC    +     ++  M  +  
Sbjct: 346 INGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDRGI 405

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                  N  +  LC   +    + +   M     +P   T   +++G CK GR+++A +
Sbjct: 406 PANVITYNSLIDGLCKNGHLDRAIALFNKMKDQGIRPCSFTFTILLDGLCKGGRLKDAQE 465

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
              D++   +   D   +  +I G    G ++EAL +L + M + G  P  VT++ ++  
Sbjct: 466 AFQDLLTKGY-HLDVYKYNVMINGHCKQGLLEEALTMLSK-MEENGCVPNAVTFDIIINA 523

Query: 361 LFRLRRVEEAKEVFNCMLGIGVV 383
           LF+    ++A+++   M+  G++
Sbjct: 524 LFKKDENDKAEKLLRQMICRGLL 546


>gi|356548144|ref|XP_003542463.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Glycine max]
          Length = 756

 Score =  202 bits (514), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 132/472 (27%), Positives = 233/472 (49%), Gaps = 11/472 (2%)

Query: 27  PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVL 86
           P+V ++  LI   C+  ++  A  + ++M + G+ P+  T++ L++G +   DVE A  +
Sbjct: 197 PDVSTFNILIRALCKAHQLRPAILMLEDMPNYGLRPDEKTFTTLMQGFIEEADVEGALRI 256

Query: 87  MFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMI 146
              + E   E   +SVN      LV+ LC+EG + E  R   +  +     ++     ++
Sbjct: 257 KELMVESGCELTSVSVNV-----LVNGLCKEGRIEEALRFIYE--EEGFCPDQVTFNALV 309

Query: 147 DSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL 206
           + LCR+G       ++  M ++G    + +YNS++ GLCK G    A ++L   +     
Sbjct: 310 NGLCRTGHIKQGLEMMDFMLEKGFELDVYTYNSLISGLCKLGEIDEAVEILHHMVSRDCE 369

Query: 207 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 266
           P+  TY  L+  LC E+ +E A ++ + + SK  +      N  ++ LCL  N    + +
Sbjct: 370 PNTVTYNTLIGTLCKENHVEAATELARVLTSKGVLPDVCTFNSLIQGLCLTSNREIAMEL 429

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM-VAGKFCAPDAVTFTTIIFGL 325
              M +  C PD  T + +I   C   R++EAL +L +M ++G  CA + V + T+I GL
Sbjct: 430 FEEMKEKGCDPDEFTYSILIESLCSERRLKEALMLLKEMELSG--CARNVVVYNTLIDGL 487

Query: 326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 385
               R+ +A ++  Q M   G S   VTYN ++ GL + +RVEEA ++ + M+  G+  D
Sbjct: 488 CKNNRVGDAEDIFDQ-MEMLGVSRSSVTYNTLINGLCKSKRVEEAAQLMDQMIMEGLKPD 546

Query: 386 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY 445
             TY  ++   C+   +  A     ++       D   Y  +I GLC++G++  A   L 
Sbjct: 547 KFTYTTMLKYFCQQGDIKRAADIVQNMTLNGCEPDIVTYGTLIGGLCKAGRVDVASKLLR 606

Query: 446 ELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            +   G+      YN VI   CK    +EA ++ REM + G  PD +T++I+
Sbjct: 607 SVQMKGMVLTPQAYNPVIQALCKRKRTKEAMRLFREMMEKGDPPDVITYKIV 658



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 129/480 (26%), Positives = 229/480 (47%), Gaps = 12/480 (2%)

Query: 30  VSYTTLIHGYCRTGEMDVAYK-VFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMF 88
           VS   L++G C+ G ++ A + +++E   C   P+ +T++ LV G+ RT  +++   +M 
Sbjct: 270 VSVNVLVNGLCKEGRIEEALRFIYEEEGFC---PDQVTFNALVNGLCRTGHIKQGLEMMD 326

Query: 89  KLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDS 148
            + E+        ++   + +L+  LC+ G ++E   I   M              +I +
Sbjct: 327 FMLEK-----GFELDVYTYNSLISGLCKLGEIDEAVEILHHMVSRDCEPNTVTYNTLIGT 381

Query: 149 LCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPS 208
           LC+      A+ +  V+  +G+ P + ++NS++ GLC       A +L EE  + G  P 
Sbjct: 382 LCKENHVEAATELARVLTSKGVLPDVCTFNSLIQGLCLTSNREIAMELFEEMKEKGCDPD 441

Query: 209 EHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLV 268
           E TY +L+E LC E  L++A  +L+ M          + N  +  LC      +  ++  
Sbjct: 442 EFTYSILIESLCSERRLKEALMLLKEMELSGCARNVVVYNTLIDGLCKNNRVGDAEDIFD 501

Query: 269 FMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNV 328
            M         +T NT+ING CK  R+EEA ++++ M+      PD  T+TT++      
Sbjct: 502 QMEMLGVSRSSVTYNTLINGLCKSKRVEEAAQLMDQMIMEGL-KPDKFTYTTMLKYFCQQ 560

Query: 329 GRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTT 388
           G I+ A +++ Q M   G  P IVTY  ++ GL +  RV+ A ++   +   G+V     
Sbjct: 561 GDIKRAADIV-QNMTLNGCEPDIVTYGTLIGGLCKAGRVDVASKLLRSVQMKGMVLTPQA 619

Query: 389 YAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG-KIHEAVHFLYEL 447
           Y  VI  LC+  +  EA R + +++   +  D   Y  + +GLC  G  I EAV F  E+
Sbjct: 620 YNPVIQALCKRKRTKEAMRLFREMMEKGDPPDVITYKIVFRGLCNGGGPIQEAVDFTVEM 679

Query: 448 VDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGND 507
           ++ G+ P    +  + +G C LSM+    Q++  + + G    + T  I   L   + ND
Sbjct: 680 LEKGILPEFPSFGFLAEGLCSLSMEDTLIQLINMVMEKGRFSQSETSIIRGFLKIQKFND 739



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 114/442 (25%), Positives = 209/442 (47%), Gaps = 9/442 (2%)

Query: 56  RHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLC 115
           R   V P++  Y+V +  +++   ++    L  K+       + +  + + F  L+ +LC
Sbjct: 156 RDFAVKPDTRFYNVALSLLVKANKLKLVETLHSKMVA-----DAVPPDVSTFNILIRALC 210

Query: 116 REGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLV 175
           +   +     + EDMP      +E     ++          GA R+  +M + G   + V
Sbjct: 211 KAHQLRPAILMLEDMPNYGLRPDEKTFTTLMQGFIEEADVEGALRIKELMVESGCELTSV 270

Query: 176 SYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM 235
           S N +V+GLCK G    A + + E  + G+ P + T+  LV GLC    +++  +++ FM
Sbjct: 271 SVNVLVNGLCKEGRIEEALRFIYE--EEGFCPDQVTFNALVNGLCRTGHIKQGLEMMDFM 328

Query: 236 LSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 295
           L K         N  +  LC +    E + +L  M+   C+P+ +T NT+I   CK   +
Sbjct: 329 LEKGFELDVYTYNSLISGLCKLGEIDEAVEILHHMVSRDCEPNTVTYNTLIGTLCKENHV 388

Query: 296 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN 355
           E A + L  ++  K   PD  TF ++I GL      + A+ L ++ M ++G  P   TY+
Sbjct: 389 EAATE-LARVLTSKGVLPDVCTFNSLIQGLCLTSNREIAMEL-FEEMKEKGCDPDEFTYS 446

Query: 356 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP 415
            ++  L   RR++EA  +   M   G   +   Y  +IDGLC++N++ +A+  +D +   
Sbjct: 447 ILIESLCSERRLKEALMLLKEMELSGCARNVVVYNTLIDGLCKNNRVGDAEDIFDQMEML 506

Query: 416 SNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREA 475
                +  Y  +I GLC+S ++ EA   + +++  G+ P+   Y  ++   C+    + A
Sbjct: 507 GVSRSSVTYNTLINGLCKSKRVEEAAQLMDQMIMEGLKPDKFTYTTMLKYFCQQGDIKRA 566

Query: 476 YQILREMRKNGLNPDAVTWRIL 497
             I++ M  NG  PD VT+  L
Sbjct: 567 ADIVQNMTLNGCEPDIVTYGTL 588



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 96/368 (26%), Positives = 177/368 (48%), Gaps = 10/368 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC  + V  A +L   + S+G +P+V ++ +LI G C T   ++A ++F+EM+  G  P+
Sbjct: 382 LCKENHVEAATELARVLTSKGVLPDVCTFNSLIQGLCLTSNREIAMELFEEMKEKGCDPD 441

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             TYS+L+  +   R ++ A +L+ ++     E    + N   +  L+D LC+   V + 
Sbjct: 442 EFTYSILIESLCSERRLKEALMLLKEM-----ELSGCARNVVVYNTLIDGLCKNNRVGDA 496

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             I + M              +I+ LC+S R   A++++  M   GL P   +Y +++  
Sbjct: 497 EDIFDQMEMLGVSRSSVTYNTLINGLCKSKRVEEAAQLMDQMIMEGLKPDKFTYTTMLKY 556

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            C+ G   RA  +++     G  P   TY  L+ GLC    ++ A K+L+ +  K  V  
Sbjct: 557 FCQQGDIKRAADIVQNMTLNGCEPDIVTYGTLIGGLCKAGRVDVASKLLRSVQMKGMVLT 616

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK-MGRIEEALKVL 302
            +  N  ++ALC  K   E + +   M++    PDVIT   V  G C   G I+EA+   
Sbjct: 617 PQAYNPVIQALCKRKRTKEAMRLFREMMEKGDPPDVITYKIVFRGLCNGGGPIQEAVDFT 676

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
            +M+  K   P+  +F  +  GL ++      + L+  VM +  +S    +  +++RG  
Sbjct: 677 VEMLE-KGILPEFPSFGFLAEGLCSLSMEDTLIQLINMVMEKGRFSQ---SETSIIRGFL 732

Query: 363 RLRRVEEA 370
           ++++  +A
Sbjct: 733 KIQKFNDA 740



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 149/314 (47%), Gaps = 16/314 (5%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   R+ EA  L  +M+  G   NVV Y TLI G C+   +  A  +FD+M   GV
Sbjct: 449 IESLCSERRLKEALMLLKEMELSGCARNVVVYNTLIDGLCKNNRVGDAEDIFDQMEMLGV 508

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             +S+TY+ L+ G+ +++ VE A  LM ++       E L  +   +  ++   C++G +
Sbjct: 509 SRSSVTYNTLINGLCKSKRVEEAAQLMDQMI-----MEGLKPDKFTYTTMLKYFCQQGDI 563

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                I ++M       +    G +I  LC++GR   AS+++  ++ +G+  +  +YN +
Sbjct: 564 KRAADIVQNMTLNGCEPDIVTYGTLIGGLCKAGRVDVASKLLRSVQMKGMVLTPQAYNPV 623

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLC-GESDLEKARKVLQFMLSKK 239
           +  LCK      A +L  E ++ G  P   TYK++  GLC G   +++A      ML K 
Sbjct: 624 IQALCKRKRTKEAMRLFREMMEKGDPPDVITYKIVFRGLCNGGGPIQEAVDFTVEMLEKG 683

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQ----TQCQPDVITLNTVINGFCKMGRI 295
            +            LC +     L+ ++  +++    +Q +       ++I GF K+ + 
Sbjct: 684 ILPEFPSFGFLAEGLCSLSMEDTLIQLINMVMEKGRFSQSE------TSIIRGFLKIQKF 737

Query: 296 EEALKVLNDMVAGK 309
            +AL  L  ++  K
Sbjct: 738 NDALANLGAILDRK 751


>gi|302755296|ref|XP_002961072.1| hypothetical protein SELMODRAFT_75621 [Selaginella moellendorffii]
 gi|300172011|gb|EFJ38611.1| hypothetical protein SELMODRAFT_75621 [Selaginella moellendorffii]
          Length = 628

 Score =  202 bits (514), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 131/503 (26%), Positives = 245/503 (48%), Gaps = 11/503 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   R  +A +    M   G  P++V+Y +LIHG C    MD A  V  E+   G 
Sbjct: 52  IDGLCKARRPHDAIQTVKRMLRSGCEPDLVTYNSLIHGLCMANRMDDAGLVLQELVRNGF 111

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +TYS LV    R R +++A  L+ ++  R         N   + + +   C     
Sbjct: 112 APNHITYSTLVIWNCRRRRLDQARGLIREMILRGS-----VCNLVVYIDCIFGFCEARCQ 166

Query: 121 NEVF--RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
           +  +  R  ++M +   + +       I  LC++G+      ++  M + G+ P +V++ 
Sbjct: 167 SSRYECRDGDEMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGIPPDVVTFC 226

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
           SI+ GLCK      A+Q+ +  ++ G +P   TY ++++ L   + L+   +VL+ M + 
Sbjct: 227 SIISGLCKANRIDDAFQVFKGMLERGCVPDSLTYSIMLDNLSRANRLDTVDEVLEHMQAM 286

Query: 239 KD--VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIE 296
           K   V      N ++ ALC         N+L+ M+++   P++++ N VI+G CK G ++
Sbjct: 287 KAGCVMEVYTHNAFIGALCRSGKFPLAKNILLGMIESGSLPNLLSYNFVIDGLCKSGNVD 346

Query: 297 EALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
           +A K+   M+    C PD + F T+I G    GR+ +A  LL ++  +    P +VTYN 
Sbjct: 347 DAWKLSRKMLDSGCCKPDVIFFNTLISGFCKAGRLSQAHQLLIEMKAKNICVPDVVTYNT 406

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416
           ++ G  +   +++AK +   M  +G   +  TYA +I+G  +    +EA+  +D++    
Sbjct: 407 LIDGQSKFGSLKQAKLLLQEMQAVGCKPNVVTYAALINGYAKHGMYEEAESLFDEMSAKG 466

Query: 417 NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD--SGVTPNIVCYNVVIDGACKLSMKRE 474
              D   Y  ++    ++G + +A     +L +  S  +P+ + Y ++IDG C+     +
Sbjct: 467 CFPDIITYNTVLSAFSKAGMMSKAEGVYQQLKNKTSYCSPDAITYRILIDGYCRAEDTEQ 526

Query: 475 AYQILREMRKNGLNPDAVTWRIL 497
              +L+EM   G + D+ T+ +L
Sbjct: 527 GLTLLQEMTARGWSCDSYTYNVL 549



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 123/402 (30%), Positives = 204/402 (50%), Gaps = 18/402 (4%)

Query: 107 FANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMR 166
           +  L+D LC+ G ++    + + M              +ID LC++ R H A + V  M 
Sbjct: 13  YTTLIDGLCKSGDLDAAQALLQKMADAGCAPNVVTYTALIDGLCKARRPHDAIQTVKRML 72

Query: 167 KRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLE 226
           + G  P LV+YNS++HGLC       A  +L+E ++ G+ P+  TY  LV   C    L+
Sbjct: 73  RSGCEPDLVTYNSLIHGLCMANRMDDAGLVLQELVRNGFAPNHITYSTLVIWNCRRRRLD 132

Query: 227 KARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVF-------MLQTQCQPDV 279
           +AR +++ M+      R  +CN+ +   C+            +       M+++   PDV
Sbjct: 133 QARGLIREMIL-----RGSVCNLVVYIDCIFGFCEARCQSSRYECRDGDEMIESGRIPDV 187

Query: 280 ITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLY 339
           +T NT I+G CK G++++ L++L +M  G    PD VTF +II GL    RI +A   ++
Sbjct: 188 VTYNTFISGLCKAGKLDKGLEMLEEMDRGGI-PPDVVTFCSIISGLCKANRIDDAFQ-VF 245

Query: 340 QVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI--GVVADSTTYAIVIDGLC 397
           + M +RG  P  +TY+ +L  L R  R++   EV   M  +  G V +  T+   I  LC
Sbjct: 246 KGMLERGCVPDSLTYSIMLDNLSRANRLDTVDEVLEHMQAMKAGCVMEVYTHNAFIGALC 305

Query: 398 ESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG-VTPNI 456
            S +   AK     ++   ++ +   Y  +I GLC+SG + +A     +++DSG   P++
Sbjct: 306 RSGKFPLAKNILLGMIESGSLPNLLSYNFVIDGLCKSGNVDDAWKLSRKMLDSGCCKPDV 365

Query: 457 VCYNVVIDGACKLSMKREAYQILREMR-KNGLNPDAVTWRIL 497
           + +N +I G CK     +A+Q+L EM+ KN   PD VT+  L
Sbjct: 366 IFFNTLISGFCKAGRLSQAHQLLIEMKAKNICVPDVVTYNTL 407



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 98/216 (45%), Gaps = 38/216 (17%)

Query: 316 VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN 375
           VT+TT+I GL   G +  A  LL Q M   G +P +VTY A++ GL + RR  +A +   
Sbjct: 11  VTYTTLIDGLCKSGDLDAAQALL-QKMADAGCAPNVVTYTALIDGLCKARRPHDAIQTVK 69

Query: 376 CMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG 435
            ML  G   D  TY  +I GLC +N++D+A     ++V      ++  Y+ ++   CR  
Sbjct: 70  RMLRSGCEPDLVTYNSLIHGLCMANRMDDAGLVLQELVRNGFAPNHITYSTLVIWNCRRR 129

Query: 436 KIHEAVHFLY-------------------------------------ELVDSGVTPNIVC 458
           ++ +A   +                                      E+++SG  P++V 
Sbjct: 130 RLDQARGLIREMILRGSVCNLVVYIDCIFGFCEARCQSSRYECRDGDEMIESGRIPDVVT 189

Query: 459 YNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
           YN  I G CK     +  ++L EM + G+ PD VT+
Sbjct: 190 YNTFISGLCKAGKLDKGLEMLEEMDRGGIPPDVVTF 225



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 59/257 (22%), Positives = 117/257 (45%), Gaps = 10/257 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHV-PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCG 59
           +D LC    V +A KL   M   G   P+V+ + TLI G+C+ G +  A+++  EM+   
Sbjct: 336 IDGLCKSGNVDDAWKLSRKMLDSGCCKPDVIFFNTLISGFCKAGRLSQAHQLLIEMKAKN 395

Query: 60  V-LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREG 118
           + +P+ +TY+ L+ G  +   +++A +L+ ++     +      N   +A L++   + G
Sbjct: 396 ICVPDVVTYNTLIDGQSKFGSLKQAKLLLQEM-----QAVGCKPNVVTYAALINGYAKHG 450

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRG--LTPSLVS 176
              E   + ++M       +      ++ +  ++G    A  V   ++ +    +P  ++
Sbjct: 451 MYEEAESLFDEMSAKGCFPDIITYNTVLSAFSKAGMMSKAEGVYQQLKNKTSYCSPDAIT 510

Query: 177 YNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDL-EKARKVLQFM 235
           Y  ++ G C+     +   LL+E    G+    +TY VL+  L    ++  KA  V Q M
Sbjct: 511 YRILIDGYCRAEDTEQGLTLLQEMTARGWSCDSYTYNVLIAKLAETEEVPSKALAVYQQM 570

Query: 236 LSKKDVDRTRICNIYLR 252
           L +  V    I N  +R
Sbjct: 571 LDQDCVPSASIFNSLVR 587



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 96/215 (44%), Gaps = 9/215 (4%)

Query: 6   GLSRVG---EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           G S+ G   +A  L  +M++ G  PNVV+Y  LI+GY + G  + A  +FDEM   G  P
Sbjct: 410 GQSKFGSLKQAKLLLQEMQAVGCKPNVVTYAALINGYAKHGMYEEAESLFDEMSAKGCFP 469

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNA-AFANLVDSLCREGYVN 121
           + +TY+ ++    +   + +A      +++++K +      +A  +  L+D  CR     
Sbjct: 470 DIITYNTVLSAFSKAGMMSKAE----GVYQQLKNKTSYCSPDAITYRILIDGYCRAEDTE 525

Query: 122 EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYV-MRKRGLTPSLVSYNSI 180
           +   + ++M       + +    +I  L  +      +  VY  M  +   PS   +NS+
Sbjct: 526 QGLTLLQEMTARGWSCDSYTYNVLIAKLAETEEVPSKALAVYQQMLDQDCVPSASIFNSL 585

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVL 215
           V    + G    A  +++E  + G+L      + L
Sbjct: 586 VRLFLRTGDVNSARSMVQEMNEKGHLVDASNLEAL 620


>gi|302795027|ref|XP_002979277.1| hypothetical protein SELMODRAFT_51561 [Selaginella moellendorffii]
 gi|300153045|gb|EFJ19685.1| hypothetical protein SELMODRAFT_51561 [Selaginella moellendorffii]
          Length = 570

 Score =  202 bits (514), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 133/480 (27%), Positives = 246/480 (51%), Gaps = 20/480 (4%)

Query: 28  NVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLM 87
           +V SY  L+ GYC TGE+  A ++  EM+   + PN  T+  +++G  +   +E A    
Sbjct: 1   SVASYNLLVRGYCETGEVCKALRLVKEMKARDLAPNETTHGEILKGFCQIGRMEEA---- 56

Query: 88  FKLWERMKEEEDLS-VNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKS-VNEEFACGHM 145
               E  +   D S V+ A +  L+D  C+   +++ F +AE+M      +     C  +
Sbjct: 57  ---LEHFRSVIDTSGVDPAMYNTLIDGFCKVAKLSDAFNLAEEMIVDLGWMPSAVTCNTL 113

Query: 146 IDSLCRSGRNHGASRVVYVMRKR----GLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGI 201
           +  LC++G    A ++   M +R        +L + N+++ GLC+ G    A +L+ EG 
Sbjct: 114 VAGLCKAGSFDKAVKLFTRMAERTKRNSTMVTLAAANALIDGLCRAGRVDEALELVFEGC 173

Query: 202 QFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC-NIYLRALCLIKNP 260
           +   + +  TY +L++GLC    +E   ++L+ M + + ++      N  +   C +   
Sbjct: 174 KDKAMINAVTYGILIQGLCKSKRVEDGLRLLEEMSTSRGLNPDAATYNSIVAGFCELDMV 233

Query: 261 TELLNVLVFMLQ-TQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
            + L +   + Q  +C PD + + T++NG CK GR  +AL++L +M     C P +  + 
Sbjct: 234 EQALELFSNVTQGNKCAPDPVMIGTLVNGLCKSGRSLQALELLEEM-DRVGCQPSSQVYC 292

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIV-TYNAVLRGLFRLRRVEEAKEVFNCML 378
            +I  L N G   +A  LL++ + ++G +P    TY  ++ GL++  R E+A+     +L
Sbjct: 293 LMIEELCNSGEADKACKLLHETL-RKGRAPANTGTYTMIVDGLYKTHRPEKARRHLKGIL 351

Query: 379 GIGVVADS-TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKI 437
              + A S  T   +IDGLC+S +  EA+ F   +    +  + ++Y +++ GLC++ K+
Sbjct: 352 SSSLSAPSVVTSCAIIDGLCKSGRFSEARWFLLSMGQMGSKANTHIYNSLLGGLCKAAKM 411

Query: 438 HEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            EA+ F +E+ D G+ P++V YN+++DG CK+    EA  +   M      P AVT++ L
Sbjct: 412 GEALAFFHEMQDEGL-PSVVTYNILLDGFCKVVKIEEACAVFVAMVDAKCLPTAVTYKTL 470



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 142/530 (26%), Positives = 236/530 (44%), Gaps = 56/530 (10%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEM-RHCGVLP 62
            C + R+ EA + F  +     V   + Y TLI G+C+  ++  A+ + +EM    G +P
Sbjct: 47  FCQIGRMEEALEHFRSVIDTSGVDPAM-YNTLIDGFCKVAKLSDAFNLAEEMIVDLGWMP 105

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           +++T + LV G+ +    ++A  L  ++ ER K    + V  AA   L+D LCR G V+E
Sbjct: 106 SAVTCNTLVAGLCKAGSFDKAVKLFTRMAERTKRNSTM-VTLAAANALIDGLCRAGRVDE 164

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMR-KRGLTPSLVSYNSIV 181
              +  +  + K++      G +I  LC+S R     R++  M   RGL P   +YNSIV
Sbjct: 165 ALELVFEGCKDKAMINAVTYGILIQGLCKSKRVEDGLRLLEEMSTSRGLNPDAATYNSIV 224

Query: 182 ------------------------------------HGLCKHGGCMRAYQLLEEGIQFGY 205
                                               +GLCK G  ++A +LLEE  + G 
Sbjct: 225 AGFCELDMVEQALELFSNVTQGNKCAPDPVMIGTLVNGLCKSGRSLQALELLEEMDRVGC 284

Query: 206 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK-KDVDRTRICNIYLRALCLIKNPTELL 264
            PS   Y +++E LC   + +KA K+L   L K +    T    + +  L     P +  
Sbjct: 285 QPSSQVYCLMIEELCNSGEADKACKLLHETLRKGRAPANTGTYTMIVDGLYKTHRPEKAR 344

Query: 265 NVLVFMLQTQ-CQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCA-PDAVTFTTII 322
             L  +L +    P V+T   +I+G CK GR  EA   L  M  G+  +  +   + +++
Sbjct: 345 RHLKGILSSSLSAPSVVTSCAIIDGLCKSGRFSEARWFLLSM--GQMGSKANTHIYNSLL 402

Query: 323 FGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGV 382
            GL    ++ EAL   ++ M   G  P +VTYN +L G  ++ ++EEA  VF  M+    
Sbjct: 403 GGLCKAAKMGEALAFFHE-MQDEGL-PSVVTYNILLDGFCKVVKIEEACAVFVAMVDAKC 460

Query: 383 VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVH 442
           +  + TY  + +G   S ++ E  +F D         D +     I  L R   +     
Sbjct: 461 LPTAVTYKTLTEGFTRSGKMAEDYQFADQ-------RDGFPKGLDII-LSRLKNLEPGFQ 512

Query: 443 FLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAV 492
            +Y +VD G+   ++  N +I    K  M  +A ++ + + K G  P AV
Sbjct: 513 VIYMMVDKGLI-KLMTVNSIIRRLWKAGMGDQADKLAQTLVKKGGIPPAV 561



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 93/222 (41%), Gaps = 21/222 (9%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   R  EA      M   G   N   Y +L+ G C+  +M  A   F EM+  G 
Sbjct: 367 IDGLCKSGRFSEARWFLLSMGQMGSKANTHIYNSLLGGLCKAAKMGEALAFFHEMQDEG- 425

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           LP+ +TY++L+ G  +   +E A  +   + +              +  L +   R G +
Sbjct: 426 LPSVVTYNILLDGFCKVVKIEEACAVFVAMVD-----AKCLPTAVTYKTLTEGFTRSGKM 480

Query: 121 NEVFRIAED---MPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
            E ++ A+     P+G  +            L R        +V+Y+M  +GL   L++ 
Sbjct: 481 AEDYQFADQRDGFPKGLDI-----------ILSRLKNLEPGFQVIYMMVDKGLI-KLMTV 528

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGL 219
           NSI+  L K G   +A +L +  ++ G +P       + +GL
Sbjct: 529 NSIIRRLWKAGMGDQADKLAQTLVKKGGIPPAVMRAAVTDGL 570


>gi|414880311|tpg|DAA57442.1| TPA: hypothetical protein ZEAMMB73_673693 [Zea mays]
          Length = 770

 Score =  202 bits (514), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 137/496 (27%), Positives = 242/496 (48%), Gaps = 44/496 (8%)

Query: 13  AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHC-GVLPNSLTYSVLV 71
           A   F ++ +RG  P++ +   L+      G++D+A KVF EMR    V P+  TY+V++
Sbjct: 164 AADAFLELSTRGASPSIKTCNILVEALGCGGQLDLARKVFGEMRDGNAVAPDVYTYTVMI 223

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP 131
           + + R  +++ A V++ +L     E   +      +  L+D+LCR G V E F++   M 
Sbjct: 224 KALCRAGEIDAAFVMLAEL-----ERSGIQPTVVTYNVLMDALCRSGRVEEAFQLKGRMV 278

Query: 132 QGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCM 191
           +G+        G +I+ L R  R      V+  M   G+TP+ V YN ++   C+ G C 
Sbjct: 279 EGRLRPSIVTFGILINGLARGQRFGEVDAVLQEMEGFGITPNEVIYNQLIGWHCREGHCS 338

Query: 192 RAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYL 251
            A +L +E +  G   +  TY ++ + LC E ++E A ++L  ML       T  C+++ 
Sbjct: 339 EALRLFDEMVSKGIKQTVVTYNLIAKALCKEGEMEHAEQILDEMLL---AGMTVHCSLF- 394

Query: 252 RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK-MGRIEEALKVLNDMVAGKF 310
                                          N+V+    +  GR++  L+++ +MVA +F
Sbjct: 395 -------------------------------NSVVAWHLRGTGRLDVVLRLIREMVA-RF 422

Query: 311 CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEA 370
             P+    T  I  L   G+ +EA  + + V+  +G    I T NA++ GL +   ++EA
Sbjct: 423 LKPNDAVMTACIQELCKRGKHEEAAEIWFLVL-GKGLGVNIATSNALIHGLCQGNNMKEA 481

Query: 371 KEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKG 430
            +V   M+  GV  D  TY I+I   C++++++EA +  DD++      D + +   ++ 
Sbjct: 482 TKVLKAMVDSGVEFDRITYNIMIQFCCKASKMEEAIQLRDDMIKRGFKPDLFTFNTFLRA 541

Query: 431 LCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD 490
            C  GK+ + +H L ++   G+ P+IV Y  +IDG CK     +A + L E+ KNGL P+
Sbjct: 542 YCNLGKVEDILHLLDQMKSEGLKPDIVTYGTIIDGYCKAKDVHKANKYLIELIKNGLRPN 601

Query: 491 AVTWRILDKLHGNRGN 506
           AV +  L   +G  G+
Sbjct: 602 AVIYNALIGGYGRNGS 617



 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 123/466 (26%), Positives = 235/466 (50%), Gaps = 16/466 (3%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           R GE   +  +M+  G  PN V Y  LI  +CR G    A ++FDEM   G+    +TY+
Sbjct: 301 RFGEVDAVLQEMEGFGITPNEVIYNQLIGWHCREGHCSEALRLFDEMVSKGIKQTVVTYN 360

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCR-EGYVNEVFRIA 127
           ++ + + +  ++E A  ++ ++         ++V+ + F ++V    R  G ++ V R+ 
Sbjct: 361 LIAKALCKEGEMEHAEQILDEMLL-----AGMTVHCSLFNSVVAWHLRGTGRLDVVLRLI 415

Query: 128 EDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKH 187
            +M        +      I  LC+ G++  A+ + +++  +GL  ++ + N+++HGLC+ 
Sbjct: 416 REMVARFLKPNDAVMTACIQELCKRGKHEEAAEIWFLVLGKGLGVNIATSNALIHGLCQG 475

Query: 188 GGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC 247
                A ++L+  +  G      TY ++++  C  S +E+A ++   M+ +         
Sbjct: 476 NNMKEATKVLKAMVDSGVEFDRITYNIMIQFCCKASKMEEAIQLRDDMIKRGFKPDLFTF 535

Query: 248 NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA 307
           N +LRA C +    ++L++L  M     +PD++T  T+I+G+CK   + +A K L +++ 
Sbjct: 536 NTFLRAYCNLGKVEDILHLLDQMKSEGLKPDIVTYGTIIDGYCKAKDVHKANKYLIELIK 595

Query: 308 GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRV 367
                P+AV +  +I G    G I +A+ +L   M   G  P  +TYN+++  +     V
Sbjct: 596 NGL-RPNAVIYNALIGGYGRNGSISDAIGVL-DTMKHNGIQPTPITYNSLMYWMCHAGLV 653

Query: 368 EEAKEVF-NCMLG---IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
           EEAKE+F  C+L    +GV+     Y I+I G C+  ++DEA  ++ ++ +     +   
Sbjct: 654 EEAKEIFAQCILKNIELGVIG----YTIIIQGFCKIGKIDEAVMYFKEMHYRDIRPNKMT 709

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKL 469
           Y  ++   C+ G   EA     E+V SG+ P+ V YN +I G C++
Sbjct: 710 YTTLMYAYCKCGNKEEAFKLFDEMVSSGIVPDTVSYNTLISGCCEV 755



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 146/558 (26%), Positives = 252/558 (45%), Gaps = 81/558 (14%)

Query: 13  AHKLFFDMKSRGHV-PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           A K+F +M+    V P+V +YT +I   CR GE+D A+ +  E+   G+ P  +TY+VL+
Sbjct: 199 ARKVFGEMRDGNAVAPDVYTYTVMIKALCRAGEIDAAFVMLAELERSGIQPTVVTYNVLM 258

Query: 72  RGVLRTRDVERANVLMFKLWERMKE------------------------EED-------- 99
             + R+  VE A    F+L  RM E                        E D        
Sbjct: 259 DALCRSGRVEEA----FQLKGRMVEGRLRPSIVTFGILINGLARGQRFGEVDAVLQEMEG 314

Query: 100 --LSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMI-DSLCRSGRNH 156
             ++ N   +  L+   CREG+ +E  R+ ++M   K + +     ++I  +LC+ G   
Sbjct: 315 FGITPNEVIYNQLIGWHCREGHCSEALRLFDEM-VSKGIKQTVVTYNLIAKALCKEGEME 373

Query: 157 GASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRA-YQLLEEGIQFGYLPSEHTYKVL 215
            A +++  M   G+T     +NS+V    +  G +    +L+ E +     P++      
Sbjct: 374 HAEQILDEMLLAGMTVHCSLFNSVVAWHLRGTGRLDVVLRLIREMVARFLKPNDAVMTAC 433

Query: 216 VEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQC 275
           ++ LC     E+A ++   +L K         N  +  LC   N  E   VL  M+ +  
Sbjct: 434 IQELCKRGKHEEAAEIWFLVLGKGLGVNIATSNALIHGLCQGNNMKEATKVLKAMVDSGV 493

Query: 276 QPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEAL 335
           + D IT N +I   CK  ++EEA+++ +DM+   F  PD  TF T +    N+G++++ L
Sbjct: 494 EFDRITYNIMIQFCCKASKMEEAIQLRDDMIKRGF-KPDLFTFNTFLRAYCNLGKVEDIL 552

Query: 336 NLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKE---------------VFNCMLG- 379
           +LL Q M   G  P IVTY  ++ G  + + V +A +               ++N ++G 
Sbjct: 553 HLLDQ-MKSEGLKPDIVTYGTIIDGYCKAKDVHKANKYLIELIKNGLRPNAVIYNALIGG 611

Query: 380 ----------IGVV---------ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
                     IGV+             TY  ++  +C +  ++EAK  +   +   NI  
Sbjct: 612 YGRNGSISDAIGVLDTMKHNGIQPTPITYNSLMYWMCHAGLVEEAKEIFAQCIL-KNIEL 670

Query: 421 NYV-YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
             + Y  +I+G C+ GKI EAV +  E+    + PN + Y  ++   CK   K EA+++ 
Sbjct: 671 GVIGYTIIIQGFCKIGKIDEAVMYFKEMHYRDIRPNKMTYTTLMYAYCKCGNKEEAFKLF 730

Query: 480 REMRKNGLNPDAVTWRIL 497
            EM  +G+ PD V++  L
Sbjct: 731 DEMVSSGIVPDTVSYNTL 748



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/305 (20%), Positives = 132/305 (43%), Gaps = 48/305 (15%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C  S++ EA +L  DM  RG  P++ ++ T +  YC  G+++    + D+M+  G+ P+ 
Sbjct: 508 CKASKMEEAIQLRDDMIKRGFKPDLFTFNTFLRAYCNLGKVEDILHLLDQMKSEGLKPDI 567

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           +TY  ++ G  + +DV +AN  + +L      +  L  N   +  L+    R G +++  
Sbjct: 568 VTYGTIIDGYCKAKDVHKANKYLIELI-----KNGLRPNAVIYNALIGGYGRNGSISD-- 620

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
                                            A  V+  M+  G+ P+ ++YNS+++ +
Sbjct: 621 ---------------------------------AIGVLDTMKHNGIQPTPITYNSLMYWM 647

Query: 185 CKHGGCMRAYQLLEE----GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           C  G    A ++  +     I+ G +     Y ++++G C    +++A    + M  +  
Sbjct: 648 CHAGLVEEAKEIFAQCILKNIELGVI----GYTIIIQGFCKIGKIDEAVMYFKEMHYRDI 703

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                     + A C   N  E   +   M+ +   PD ++ NT+I+G C++  +++ ++
Sbjct: 704 RPNKMTYTTLMYAYCKCGNKEEAFKLFDEMVSSGIVPDTVSYNTLISGCCEVDSLDKIVE 763

Query: 301 VLNDM 305
              +M
Sbjct: 764 SPAEM 768


>gi|449462543|ref|XP_004149000.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic-like [Cucumis sativus]
          Length = 822

 Score =  202 bits (514), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 125/482 (25%), Positives = 250/482 (51%), Gaps = 11/482 (2%)

Query: 18  FDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRT 77
           F + S G  P+V S+T +I+  C+ G+M+ A ++F +M   G+ PN +TY+ ++ G+ + 
Sbjct: 232 FRVMSEGACPDVFSFTNVINALCKGGKMENAIELFMKMEKLGISPNVVTYNCIINGLCQN 291

Query: 78  RDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVN 137
             ++ A    F+L E+M  +  +  N   +  L++ L +  + ++V  + ++M  G   N
Sbjct: 292 GRLDNA----FELKEKMTVK-GVQPNLKTYGALINGLIKLNFFDKVNHVLDEM-IGSGFN 345

Query: 138 EEFAC-GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQL 196
                  ++ID  C+ G   GA ++  VM  + +TP+ V+  S++ G CK      A   
Sbjct: 346 PNVVVFNNLIDGYCKMGNIEGALKIKDVMISKNITPTSVTLYSLMQGFCKSDQIEHAENA 405

Query: 197 LEEGIQFGY-LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALC 255
           LEE +  G  +  ++ Y V V  LC +     A +  + MLS+       +  + +  LC
Sbjct: 406 LEEILSSGLSIHPDNCYSV-VHWLCKKFRYHSAFRFTKMMLSRNFRPSDLLLTMLVCGLC 464

Query: 256 LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA 315
                 E   +   +L+       +T N +I+G C  G++ EA +++ +M+  +    D 
Sbjct: 465 KDGKHLEATELWFRLLEKGSPASKVTSNALIHGLCGAGKLPEASRIVKEMLE-RGLPMDR 523

Query: 316 VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN 375
           +T+  +I G  N G+++    L  + M +RG  P I TYN +LRGL  + ++++A ++++
Sbjct: 524 ITYNALILGFCNEGKVEGCFRL-REEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWD 582

Query: 376 CMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG 435
                G++++  TY I+++G C++N++++ +  +++++      ++ VY  +IK  C++G
Sbjct: 583 EFKASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKMELNSIVYNIIIKAHCQNG 642

Query: 436 KIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWR 495
            +  A+  L  +   G+ PN   Y+ +I G C + +  +A  ++ EMRK G  P+ V + 
Sbjct: 643 NVAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYT 702

Query: 496 IL 497
            L
Sbjct: 703 AL 704



 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 131/488 (26%), Positives = 241/488 (49%), Gaps = 17/488 (3%)

Query: 19  DMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTR 78
           +M   G  PNVV +  LI GYC+ G ++ A K+ D M    + P S+T   L++G  ++ 
Sbjct: 338 EMIGSGFNPNVVVFNNLIDGYCKMGNIEGALKIKDVMISKNITPTSVTLYSLMQGFCKSD 397

Query: 79  DVERANVLMFKLWERMKEE---EDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKS 135
            +E A        E   EE     LS++     ++V  LC++   +  FR  + M     
Sbjct: 398 QIEHA--------ENALEEILSSGLSIHPDNCYSVVHWLCKKFRYHSAFRFTKMMLSRNF 449

Query: 136 VNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQ 195
              +     ++  LC+ G++  A+ + + + ++G   S V+ N+++HGLC  G    A +
Sbjct: 450 RPSDLLLTMLVCGLCKDGKHLEATELWFRLLEKGSPASKVTSNALIHGLCGAGKLPEASR 509

Query: 196 LLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALC 255
           +++E ++ G      TY  L+ G C E  +E   ++ + M  +         N  LR LC
Sbjct: 510 IVKEMLERGLPMDRITYNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNFLLRGLC 569

Query: 256 LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA 315
            +    + + +      +    ++ T   ++ G+CK  RIE+   + N++++ K    ++
Sbjct: 570 NVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKM-ELNS 628

Query: 316 VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN 375
           + +  II      G +  AL LL + M  +G  P   TY++++ G+  +  VE+AK + +
Sbjct: 629 IVYNIIIKAHCQNGNVAAALQLL-ENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLID 687

Query: 376 CMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN-YVYAAMIKGLCRS 434
            M   G V +   Y  +I G C+  Q+D A+  W +++   NIH N + Y  MI G C+ 
Sbjct: 688 EMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMI-SFNIHPNKFTYTVMIDGYCKL 746

Query: 435 GKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
           G + +A + L ++ +SG+ P++V YNV+ +G CK +    A+++  +M   GL  D +T+
Sbjct: 747 GNMEKANNLLIKMKESGIVPDVVTYNVLTNGFCKANDMDNAFKVCDQMATEGLPVDEITY 806

Query: 495 RILDKLHG 502
             L  +HG
Sbjct: 807 TTL--VHG 812



 Score =  194 bits (494), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 128/506 (25%), Positives = 237/506 (46%), Gaps = 7/506 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   ++  A +LF  M+  G  PNVV+Y  +I+G C+ G +D A+++ ++M   GV
Sbjct: 250 INALCKGGKMENAIELFMKMEKLGISPNVVTYNCIINGLCQNGRLDNAFELKEKMTVKGV 309

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN  TY  L+ G+++    ++ N ++ ++          + N   F NL+D  C+ G +
Sbjct: 310 QPNLKTYGALINGLIKLNFFDKVNHVLDEMIG-----SGFNPNVVVFNNLIDGYCKMGNI 364

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
               +I + M              ++   C+S +   A   +  +   GL+    +  S+
Sbjct: 365 EGALKIKDVMISKNITPTSVTLYSLMQGFCKSDQIEHAENALEEILSSGLSIHPDNCYSV 424

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           VH LCK      A++  +  +   + PS+    +LV GLC +    +A ++   +L K  
Sbjct: 425 VHWLCKKFRYHSAFRFTKMMLSRNFRPSDLLLTMLVCGLCKDGKHLEATELWFRLLEKGS 484

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                  N  +  LC      E   ++  ML+     D IT N +I GFC  G++E   +
Sbjct: 485 PASKVTSNALIHGLCGAGKLPEASRIVKEMLERGLPMDRITYNALILGFCNEGKVEGCFR 544

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +  +M   +   PD  T+  ++ GL NVG++ +A+ L +      G    I TY  ++ G
Sbjct: 545 LREEMTK-RGIQPDIYTYNFLLRGLCNVGKLDDAIKL-WDEFKASGLISNIHTYGIMMEG 602

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
             +  R+E+ + +FN +L   +  +S  Y I+I   C++  +  A +  +++     + +
Sbjct: 603 YCKANRIEDVENLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPN 662

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              Y+++I G+C  G + +A H + E+   G  PN+VCY  +I G CKL     A     
Sbjct: 663 CATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWL 722

Query: 481 EMRKNGLNPDAVTWRILDKLHGNRGN 506
           EM    ++P+  T+ ++   +   GN
Sbjct: 723 EMISFNIHPNKFTYTVMIDGYCKLGN 748



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 92/357 (25%), Positives = 165/357 (46%), Gaps = 3/357 (0%)

Query: 141 ACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEG 200
            C  ++ SL ++        V  VM + G  P + S+ ++++ LCK G    A +L  + 
Sbjct: 211 TCNFLLSSLVKANEFEKCCEVFRVMSE-GACPDVFSFTNVINALCKGGKMENAIELFMKM 269

Query: 201 IQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNP 260
            + G  P+  TY  ++ GLC    L+ A ++ + M  K      +     +  L  +   
Sbjct: 270 EKLGISPNVVTYNCIINGLCQNGRLDNAFELKEKMTVKGVQPNLKTYGALINGLIKLNFF 329

Query: 261 TELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTT 320
            ++ +VL  M+ +   P+V+  N +I+G+CKMG IE ALK+  D++  K   P +VT  +
Sbjct: 330 DKVNHVLDEMIGSGFNPNVVVFNNLIDGYCKMGNIEGALKI-KDVMISKNITPTSVTLYS 388

Query: 321 IIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI 380
           ++ G     +I+ A N L +++   G S       +V+  L +  R   A      ML  
Sbjct: 389 LMQGFCKSDQIEHAENALEEIL-SSGLSIHPDNCYSVVHWLCKKFRYHSAFRFTKMMLSR 447

Query: 381 GVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEA 440
                     +++ GLC+  +  EA   W  ++   +        A+I GLC +GK+ EA
Sbjct: 448 NFRPSDLLLTMLVCGLCKDGKHLEATELWFRLLEKGSPASKVTSNALIHGLCGAGKLPEA 507

Query: 441 VHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
              + E+++ G+  + + YN +I G C        +++  EM K G+ PD  T+  L
Sbjct: 508 SRIVKEMLERGLPMDRITYNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNFL 564



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 83/321 (25%), Positives = 145/321 (45%), Gaps = 41/321 (12%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C   +V    +L  +M  RG  P++ +Y  L+ G C  G++D A K++DE +  G++ N
Sbjct: 533 FCNEGKVEGCFRLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISN 592

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             TY +++ G  +   +E    L  +L  +  E     +N+  +  ++ + C+ G V   
Sbjct: 593 IHTYGIMMEGYCKANRIEDVENLFNELLSKKME-----LNSIVYNIIIKAHCQNGNVAAA 647

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            ++ E+M     +        +I  +C  G    A  ++  MRK G  P++V Y +++ G
Sbjct: 648 LQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTALIGG 707

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK G    A     E I F   P++ TY V+++G C   ++EKA               
Sbjct: 708 YCKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKAN-------------- 753

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                                N+L+ M ++   PDV+T N + NGFCK   ++ A KV  
Sbjct: 754 ---------------------NLLIKMKESGIVPDVVTYNVLTNGFCKANDMDNAFKVC- 791

Query: 304 DMVAGKFCAPDAVTFTTIIFG 324
           D +A +    D +T+TT++ G
Sbjct: 792 DQMATEGLPVDEITYTTLVHG 812



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 45/73 (61%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C L  + +A+ L   MK  G VP+VV+Y  L +G+C+  +MD A+KV D+M   G+
Sbjct: 740 IDGYCKLGNMEKANNLLIKMKESGIVPDVVTYNVLTNGFCKANDMDNAFKVCDQMATEGL 799

Query: 61  LPNSLTYSVLVRG 73
             + +TY+ LV G
Sbjct: 800 PVDEITYTTLVHG 812


>gi|297796945|ref|XP_002866357.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312192|gb|EFH42616.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 907

 Score =  202 bits (514), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 140/493 (28%), Positives = 237/493 (48%), Gaps = 44/493 (8%)

Query: 3   QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
            LC L  +  A ++   M++ G   N+V Y  LI G C+  ++  A  +  ++    + P
Sbjct: 236 SLCELKDLSRAKEMIVQMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKELKP 295

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           + +TY  LV G+ + ++ E   + M     R++     S + AA ++LV+ L + G V E
Sbjct: 296 DVVTYCTLVCGLCKVQEFE-VGLEMIDEMLRLR----FSPSEAAVSSLVEGLRKRGKVEE 350

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVY-VMRKRGLTPSLVSYNSIV 181
              + + + +       F    +IDSLC+ GRN   + +++  M K GL P+ V+Y+ ++
Sbjct: 351 ALNLVKRVAEFGVSPNIFVYNALIDSLCK-GRNFDEAELLFDRMGKIGLCPNDVTYSILI 409

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
              C+ G    A   L E I  G  PS + Y  L+ G C   D+  A  ++  M++KK  
Sbjct: 410 DMFCRRGKLDTALSFLGEMIDMGLKPSVYPYNSLINGHCKFGDISAAESLMAEMINKK-- 467

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
                                             +P V+T  +++ G+C  G+I +AL++
Sbjct: 468 ---------------------------------LEPTVVTYTSLMGGYCSKGKINKALRL 494

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
            ++M  GK   P   TFTT++ GL   G I++A+ L  + M +    P  VTYN ++ G 
Sbjct: 495 YHEM-TGKGIVPSIYTFTTLLSGLFRAGLIRDAVKLFTE-MAEWNVKPNRVTYNVMIEGY 552

Query: 362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
                + +A E  N M+  G+V D+ +Y  +I GLC + Q  EAK F D +   +   + 
Sbjct: 553 CEEGNMSKAFEFLNEMIEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNE 612

Query: 422 YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
             Y  ++ G CR GK+ EA+    ++   GV  ++VCY V+IDG+ K   ++    +L+E
Sbjct: 613 ICYTGLLHGFCREGKLEEALSVCQDMGLRGVDLDLVCYGVLIDGSLKHKDRKVFLGLLKE 672

Query: 482 MRKNGLNPDAVTW 494
           M   GL PD V +
Sbjct: 673 MHDRGLKPDDVIY 685



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 139/530 (26%), Positives = 238/530 (44%), Gaps = 46/530 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC      EA  LF  M   G  PN V+Y+ LI  +CR G++D A     EM   G+
Sbjct: 374 IDSLCKGRNFDEAELLFDRMGKIGLCPNDVTYSILIDMFCRRGKLDTALSFLGEMIDMGL 433

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+   Y+ L+ G  +  D+  A  LM ++  +      L      + +L+   C +G +
Sbjct: 434 KPSVYPYNSLINGHCKFGDISAAESLMAEMINK-----KLEPTVVTYTSLMGGYCSKGKI 488

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           N+  R+  +M     V   +    ++  L R+G    A ++   M +  + P+ V+YN +
Sbjct: 489 NKALRLYHEMTGKGIVPSIYTFTTLLSGLFRAGLIRDAVKLFTEMAEWNVKPNRVTYNVM 548

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGL--------------------- 219
           + G C+ G   +A++ L E I+ G +P  ++Y+ L+ GL                     
Sbjct: 549 IEGYCEEGNMSKAFEFLNEMIEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNC 608

Query: 220 --------------CGESDLEKARKVLQFMLSKKDVDRTRIC-NIYLRALCLIKNPTELL 264
                         C E  LE+A  V Q M   + VD   +C  + +      K+    L
Sbjct: 609 ELNEICYTGLLHGFCREGKLEEALSVCQDM-GLRGVDLDLVCYGVLIDGSLKHKDRKVFL 667

Query: 265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 324
            +L  M     +PD +   ++I+   K G  +EA  +  D++  + C P+ VT+T +I G
Sbjct: 668 GLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIW-DLMINEGCVPNEVTYTAVING 726

Query: 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR-LRRVEEAKEVFNCMLGIGVV 383
           L   G + EA  L  ++ P     P  VTY   L  L + +  +++A E+ N +L  G++
Sbjct: 727 LCKAGFVNEAEILCSKMRPGNSV-PNQVTYGCFLDILTKGVGDMKKAVELHNAILK-GLL 784

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
           A++ TY ++I G C   +++EA      ++      D   Y  MI  LCR   + +A+  
Sbjct: 785 ANTATYNMLIRGFCRQGRMEEASELITRMIGDGVSPDCITYTTMISELCRRNDVKKAIEL 844

Query: 444 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVT 493
              + + G+ P+ V YN +I G C      +A ++  EM + GL P+  T
Sbjct: 845 WNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGLKPNTET 894



 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 127/476 (26%), Positives = 231/476 (48%), Gaps = 15/476 (3%)

Query: 26  VPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANV 85
           +P V + + L+HG  +     +A ++FD+M + G+ P+   Y+ ++R +   +D+ RA  
Sbjct: 189 LPEVRTLSALLHGLVKFRHFGLAMELFDDMINVGIRPDVYIYTGVIRSLCELKDLSRAKE 248

Query: 86  LMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHM 145
           ++ ++     E     VN   +  L+D LC++  V E   I +D+   +   +      +
Sbjct: 249 MIVQM-----EATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKELKPDVVTYCTL 303

Query: 146 IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY 205
           +  LC+         ++  M +   +PS  + +S+V GL K G    A  L++   +FG 
Sbjct: 304 VCGLCKVQEFEVGLEMIDEMLRLRFSPSEAAVSSLVEGLRKRGKVEEALNLVKRVAEFGV 363

Query: 206 LPSEHTYKVLVEGLCGESDLEKARKVLQFM----LSKKDVDRTRICNIYLRALCLIKNPT 261
            P+   Y  L++ LC   + ++A  +   M    L   DV  + + +++ R   L     
Sbjct: 364 SPNIFVYNALIDSLCKGRNFDEAELLFDRMGKIGLCPNDVTYSILIDMFCRRGKL----D 419

Query: 262 ELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTI 321
             L+ L  M+    +P V   N++ING CK G I  A  ++ +M+  K   P  VT+T++
Sbjct: 420 TALSFLGEMIDMGLKPSVYPYNSLINGHCKFGDISAAESLMAEMINKKL-EPTVVTYTSL 478

Query: 322 IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG 381
           + G  + G+I +AL L Y  M  +G  P I T+  +L GLFR   + +A ++F  M    
Sbjct: 479 MGGYCSKGKINKALRL-YHEMTGKGIVPSIYTFTTLLSGLFRAGLIRDAVKLFTEMAEWN 537

Query: 382 VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAV 441
           V  +  TY ++I+G CE   + +A  F ++++    + D Y Y  +I GLC +G+  EA 
Sbjct: 538 VKPNRVTYNVMIEGYCEEGNMSKAFEFLNEMIEKGIVPDTYSYRPLIHGLCLTGQASEAK 597

Query: 442 HFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            F+  L       N +CY  ++ G C+     EA  + ++M   G++ D V + +L
Sbjct: 598 VFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQDMGLRGVDLDLVCYGVL 653



 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 140/498 (28%), Positives = 223/498 (44%), Gaps = 15/498 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   +V EA  +  D+  +   P+VV+Y TL+ G C+  E +V  ++ DEM     
Sbjct: 269 IDGLCKKQKVWEAVGIKKDLAGKELKPDVVTYCTLVCGLCKVQEFEVGLEMIDEMLRLRF 328

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+    S LV G+ +   VE A      L +R+  E  +S N   +  L+DSLC+    
Sbjct: 329 SPSEAAVSSLVEGLRKRGKVEEA----LNLVKRVA-EFGVSPNIFVYNALIDSLCKGRNF 383

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E   + + M +      +     +ID  CR G+   A   +  M   GL PS+  YNS+
Sbjct: 384 DEAELLFDRMGKIGLCPNDVTYSILIDMFCRRGKLDTALSFLGEMIDMGLKPSVYPYNSL 443

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++G CK G    A  L+ E I     P+  TY  L+ G C +  + KA ++   M  K  
Sbjct: 444 INGHCKFGDISAAESLMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGI 503

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           V         L  L       + + +   M +   +P+ +T N +I G+C+ G + +A +
Sbjct: 504 VPSIYTFTTLLSGLFRAGLIRDAVKLFTEMAEWNVKPNRVTYNVMIEGYCEEGNMSKAFE 563

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
            LN+M+  K   PD  ++  +I GL   G+  EA  +    + +       + Y  +L G
Sbjct: 564 FLNEMIE-KGIVPDTYSYRPLIHGLCLTGQASEA-KVFVDGLHKGNCELNEICYTGLLHG 621

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ----LDEAKRFWDDIVWPS 416
             R  ++EEA  V   M   GV  D   Y ++IDG  +       L   K   D  + P 
Sbjct: 622 FCREGKLEEALSVCQDMGLRGVDLDLVCYGVLIDGSLKHKDRKVFLGLLKEMHDRGLKP- 680

Query: 417 NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAY 476
              D+ +Y +MI    ++G   EA      +++ G  PN V Y  VI+G CK     EA 
Sbjct: 681 ---DDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAE 737

Query: 477 QILREMRKNGLNPDAVTW 494
            +  +MR     P+ VT+
Sbjct: 738 ILCSKMRPGNSVPNQVTY 755



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 94/335 (28%), Positives = 175/335 (52%), Gaps = 4/335 (1%)

Query: 164 VMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGES 223
           +M K  L P + + ++++HGL K      A +L ++ I  G  P  + Y  ++  LC   
Sbjct: 182 MMTKVSLLPEVRTLSALLHGLVKFRHFGLAMELFDDMINVGIRPDVYIYTGVIRSLCELK 241

Query: 224 DLEKARK-VLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITL 282
           DL +A++ ++Q   +  DV+     N+ +  LC  +   E + +   +   + +PDV+T 
Sbjct: 242 DLSRAKEMIVQMEATGCDVNIVPY-NVLIDGLCKKQKVWEAVGIKKDLAGKELKPDVVTY 300

Query: 283 NTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVM 342
            T++ G CK+   E  L+++++M+  +F +P     ++++ GL   G+++EALNL+ +V 
Sbjct: 301 CTLVCGLCKVQEFEVGLEMIDEMLRLRF-SPSEAAVSSLVEGLRKRGKVEEALNLVKRV- 358

Query: 343 PQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQL 402
            + G SP I  YNA++  L + R  +EA+ +F+ M  IG+  +  TY+I+ID  C   +L
Sbjct: 359 AEFGVSPNIFVYNALIDSLCKGRNFDEAELLFDRMGKIGLCPNDVTYSILIDMFCRRGKL 418

Query: 403 DEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVV 462
           D A  F  +++        Y Y ++I G C+ G I  A   + E+++  + P +V Y  +
Sbjct: 419 DTALSFLGEMIDMGLKPSVYPYNSLINGHCKFGDISAAESLMAEMINKKLEPTVVTYTSL 478

Query: 463 IDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           + G C      +A ++  EM   G+ P   T+  L
Sbjct: 479 MGGYCSKGKINKALRLYHEMTGKGIVPSIYTFTTL 513



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 121/244 (49%), Gaps = 5/244 (2%)

Query: 266 VLVF---MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTII 322
           VLVF   M +    P+V TL+ +++G  K      A+++ +DM+      PD   +T +I
Sbjct: 176 VLVFKMMMTKVSLLPEVRTLSALLHGLVKFRHFGLAMELFDDMINVGI-RPDVYIYTGVI 234

Query: 323 FGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGV 382
             L  +  +  A  ++ Q M   G    IV YN ++ GL + ++V EA  +   + G  +
Sbjct: 235 RSLCELKDLSRAKEMIVQ-MEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKEL 293

Query: 383 VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVH 442
             D  TY  ++ GLC+  + +      D+++           +++++GL + GK+ EA++
Sbjct: 294 KPDVVTYCTLVCGLCKVQEFEVGLEMIDEMLRLRFSPSEAAVSSLVEGLRKRGKVEEALN 353

Query: 443 FLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
            +  + + GV+PNI  YN +ID  CK     EA  +   M K GL P+ VT+ IL  +  
Sbjct: 354 LVKRVAEFGVSPNIFVYNALIDSLCKGRNFDEAELLFDRMGKIGLCPNDVTYSILIDMFC 413

Query: 503 NRGN 506
            RG 
Sbjct: 414 RRGK 417



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 98/210 (46%), Gaps = 15/210 (7%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTY---- 67
           EA  ++  M + G VPN V+YT +I+G C+ G ++ A  +  +MR    +PN +TY    
Sbjct: 700 EAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEILCSKMRPGNSVPNQVTYGCFL 759

Query: 68  SVLVRGVLRTRD-VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRI 126
            +L +GV   +  VE  N ++          + L  N A +  L+   CR+G + E   +
Sbjct: 760 DILTKGVGDMKKAVELHNAIL----------KGLLANTATYNMLIRGFCRQGRMEEASEL 809

Query: 127 AEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK 186
              M       +      MI  LCR      A  +   M ++G+ P  V+YN+++HG C 
Sbjct: 810 ITRMIGDGVSPDCITYTTMISELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCV 869

Query: 187 HGGCMRAYQLLEEGIQFGYLPSEHTYKVLV 216
            G   +A +L  E ++ G  P+  T +  +
Sbjct: 870 AGEMGKATELRNEMLRQGLKPNTETSETTI 899



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 71/142 (50%), Gaps = 1/142 (0%)

Query: 354 YNAVLRGLFRLRRVEEAKEVFNCMLG-IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI 412
           ++ +++   R RRV +   VF  M+  + ++ +  T + ++ GL +      A   +DD+
Sbjct: 159 FDLLIQHYVRSRRVLDGVLVFKMMMTKVSLLPEVRTLSALLHGLVKFRHFGLAMELFDDM 218

Query: 413 VWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMK 472
           +      D Y+Y  +I+ LC    +  A   + ++  +G   NIV YNV+IDG CK    
Sbjct: 219 INVGIRPDVYIYTGVIRSLCELKDLSRAKEMIVQMEATGCDVNIVPYNVLIDGLCKKQKV 278

Query: 473 REAYQILREMRKNGLNPDAVTW 494
            EA  I +++    L PD VT+
Sbjct: 279 WEAVGIKKDLAGKELKPDVVTY 300


>gi|296081998|emb|CBI21003.3| unnamed protein product [Vitis vinifera]
          Length = 837

 Score =  202 bits (514), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 145/525 (27%), Positives = 247/525 (47%), Gaps = 33/525 (6%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           EA +L  +M + G   N+V  T+L+ GYC  G +D A  +F+++   G+ PN +TYSVL+
Sbjct: 308 EALRLKEEMINCGKPMNLVVATSLMKGYCAQGNLDSALNLFNKITEDGLFPNKVTYSVLI 367

Query: 72  RGVLRTRDVERANVLMFK------------------------LWER----MKEEEDLSVN 103
            G   + ++E+A+ L  +                        LWE       E  D  V 
Sbjct: 368 EGCCNSGNIEKASELYTQMKLNGIPPSVFNVNSLLRGYLKAPLWEEASKLFDEAVDCGVA 427

Query: 104 NAAFANLVDS-LCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVV 162
           N    N++ S LC+ G ++E   + ++M     V    +   MI   CR G    AS V 
Sbjct: 428 NIFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASSVF 487

Query: 163 YVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGE 222
             M  R L P++V+Y+ ++ G  K G   +A  L ++ +     P++ T+  ++ GLC  
Sbjct: 488 SDMLARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKV 547

Query: 223 SDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITL 282
             + +AR  L+  L +  +      N  +       N    L V   M +    P+V+T 
Sbjct: 548 GQMSEARDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTY 607

Query: 283 NTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVM 342
            ++INGFCK  RI+ ALK  ++M   K    D   ++ +I G      ++ A +L ++++
Sbjct: 608 TSLINGFCKSNRIDLALKTRDEMRE-KGLELDVTAYSALIDGFCKRRDMESAQDLFFELL 666

Query: 343 PQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQL 402
            + G SP  + YN+++ G   L  +E A   +  M+   +  D  TY  +IDGL +  +L
Sbjct: 667 -EVGLSPNRIVYNSMISGFRDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGLLKEGRL 725

Query: 403 DEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVV 462
             A   + +++    + D   +  ++ GLC  G++  A   L E+    +TP+++ YN +
Sbjct: 726 VFASDLYMEMLSKGIVPDIITFHVLVNGLCNKGQLENARKILEEMDRKNMTPSVLIYNTL 785

Query: 463 IDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL--DKLHGNRG 505
           I G  +    +EA+ +  EM   GL PD VT+ IL   K  G+R 
Sbjct: 786 IAGYFREGNLKEAFTLHDEMLDRGLVPDDVTYDILINGKFKGDRS 830



 Score =  167 bits (424), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 118/402 (29%), Positives = 207/402 (51%), Gaps = 21/402 (5%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M  LC   ++ EA  L  +M ++G VPNVVSY  +I G+CR G MD+A  VF +M    +
Sbjct: 436 MSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASSVFSDMLARDL 495

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNA----AFANLVDSLCR 116
            PN +TYS+L+ G  +  D E+A      L+++M     LS+N A     F  +++ LC+
Sbjct: 496 KPNVVTYSILIDGNFKKGDSEKA----LDLFDQM-----LSLNIAPTDFTFNTIINGLCK 546

Query: 117 EGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVS 176
            G ++E     ++  +   +        ++D   + G    A  V   M + G++P++V+
Sbjct: 547 VGQMSEARDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVT 606

Query: 177 YNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFML 236
           Y S+++G CK      A +  +E  + G       Y  L++G C   D+E A+ +  F L
Sbjct: 607 YTSLINGFCKSNRIDLALKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQDLF-FEL 665

Query: 237 SKKDVDRTRICNIYLRALCLIKNPTELLNVLVF---MLQTQCQPDVITLNTVINGFCKMG 293
            +  +   RI  +Y   +   ++   +   LV+   M+  +   D+ T  T+I+G  K G
Sbjct: 666 LEVGLSPNRI--VYNSMISGFRDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGLLKEG 723

Query: 294 RIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVT 353
           R+  A  +  +M++ K   PD +TF  ++ GL N G+++ A  +L + M ++  +P ++ 
Sbjct: 724 RLVFASDLYMEMLS-KGIVPDIITFHVLVNGLCNKGQLENARKILEE-MDRKNMTPSVLI 781

Query: 354 YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG 395
           YN ++ G FR   ++EA  + + ML  G+V D  TY I+I+G
Sbjct: 782 YNTLIAGYFREGNLKEAFTLHDEMLDRGLVPDDVTYDILING 823



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 123/491 (25%), Positives = 225/491 (45%), Gaps = 10/491 (2%)

Query: 8   SRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTY 67
           +R+  A   F  M  +  +P V     L+    R   +     ++++M   G+  +  T 
Sbjct: 164 NRIENAIDCFNAMICQDVIPWVPYMNILLTALVRRNMIGELRDLYNKMVLRGIYGDHFTV 223

Query: 68  SVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIA 127
            V+VR  L+   VE A     + + R  +E  + ++  A++ ++ ++C++   N    + 
Sbjct: 224 HVMVRACLKEGRVEEA-----EEYFRETKERGVKLDAGAYSIIIQAVCKKPNSNLGLELL 278

Query: 128 EDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKH 187
           E+M +   V  E     +I +    G    A R+   M   G   +LV   S++ G C  
Sbjct: 279 EEMKERGWVPSEATFTSVIVACVAQGNMVEALRLKEEMINCGKPMNLVVATSLMKGYCAQ 338

Query: 188 GGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC 247
           G    A  L  +  + G  P++ TY VL+EG C   ++EKA ++   M            
Sbjct: 339 GNLDSALNLFNKITEDGLFPNKVTYSVLIEGCCNSGNIEKASELYTQMKLNGIPPSVFNV 398

Query: 248 NIYLRALCLIKNPTELLNVLVFMLQTQCQ-PDVITLNTVINGFCKMGRIEEALKVLNDMV 306
           N  LR    +K P       +F     C   ++ T N +++  CK G+++EA  +L++MV
Sbjct: 399 NSLLRG--YLKAPLWEEASKLFDEAVDCGVANIFTYNIMMSWLCKGGKMDEACSLLDNMV 456

Query: 307 AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 366
             +   P+ V++  +I G    G +  A + ++  M  R   P +VTY+ ++ G F+   
Sbjct: 457 -NQGMVPNVVSYNDMILGHCRKGNMDMA-SSVFSDMLARDLKPNVVTYSILIDGNFKKGD 514

Query: 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAA 426
            E+A ++F+ ML + +     T+  +I+GLC+  Q+ EA+    + +    I     Y +
Sbjct: 515 SEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQMSEARDKLKNFLEEGFIPSCMTYNS 574

Query: 427 MIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG 486
           ++ G  + G I  A+    E+ + GV+PN+V Y  +I+G CK +    A +   EMR+ G
Sbjct: 575 IVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNRIDLALKTRDEMREKG 634

Query: 487 LNPDAVTWRIL 497
           L  D   +  L
Sbjct: 635 LELDVTAYSAL 645



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 88/417 (21%), Positives = 154/417 (36%), Gaps = 83/417 (19%)

Query: 149 LCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPS 208
           L RS   HG +R +               N  V G       +    L+    +F +   
Sbjct: 104 LMRSPETHGHARKLL--------------NRYVSGDSDPSPVVFVDHLINCAKRFDFELD 149

Query: 209 EHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLV 268
              +  L+      + +E A      M+ +  +      NI L AL       EL ++  
Sbjct: 150 HRVFNYLLNAYIRANRIENAIDCFNAMICQDVIPWVPYMNILLTALVRRNMIGELRDLYN 209

Query: 269 FMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND-------MVAGKFC---------- 311
            M+      D  T++ ++    K GR+EEA +   +       + AG +           
Sbjct: 210 KMVLRGIYGDHFTVHVMVRACLKEGRVEEAEEYFRETKERGVKLDAGAYSIIIQAVCKKP 269

Query: 312 -----------------APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTY 354
                             P   TFT++I   +  G + EAL  L + M   G    +V  
Sbjct: 270 NSNLGLELLEEMKERGWVPSEATFTSVIVACVAQGNMVEALR-LKEEMINCGKPMNLVVA 328

Query: 355 NAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI-- 412
            ++++G      ++ A  +FN +   G+  +  TY+++I+G C S  +++A   +  +  
Sbjct: 329 TSLMKGYCAQGNLDSALNLFNKITEDGLFPNKVTYSVLIEGCCNSGNIEKASELYTQMKL 388

Query: 413 --VWPSNIHDN------------------------------YVYAAMIKGLCRSGKIHEA 440
             + PS  + N                              + Y  M+  LC+ GK+ EA
Sbjct: 389 NGIPPSVFNVNSLLRGYLKAPLWEEASKLFDEAVDCGVANIFTYNIMMSWLCKGGKMDEA 448

Query: 441 VHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
              L  +V+ G+ PN+V YN +I G C+      A  +  +M    L P+ VT+ IL
Sbjct: 449 CSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASSVFSDMLARDLKPNVVTYSIL 505



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 97/225 (43%), Gaps = 2/225 (0%)

Query: 282 LNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQV 341
            N ++N + +  RIE A+   N M+         V +  I+   L    +   L  LY  
Sbjct: 153 FNYLLNAYIRANRIENAIDCFNAMICQDVIP--WVPYMNILLTALVRRNMIGELRDLYNK 210

Query: 342 MPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ 401
           M  RG      T + ++R   +  RVEEA+E F      GV  D+  Y+I+I  +C+   
Sbjct: 211 MVLRGIYGDHFTVHVMVRACLKEGRVEEAEEYFRETKERGVKLDAGAYSIIIQAVCKKPN 270

Query: 402 LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNV 461
            +      +++     +     + ++I      G + EA+    E+++ G   N+V    
Sbjct: 271 SNLGLELLEEMKERGWVPSEATFTSVIVACVAQGNMVEALRLKEEMINCGKPMNLVVATS 330

Query: 462 VIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           ++ G C       A  +  ++ ++GL P+ VT+ +L +   N GN
Sbjct: 331 LMKGYCAQGNLDSALNLFNKITEDGLFPNKVTYSVLIEGCCNSGN 375


>gi|414871694|tpg|DAA50251.1| TPA: hypothetical protein ZEAMMB73_705675 [Zea mays]
          Length = 1161

 Score =  202 bits (513), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 130/490 (26%), Positives = 238/490 (48%), Gaps = 6/490 (1%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C +S +G A  L  D+KSRG   N    T LI G+C+ GE+  A ++   M   G+ P+ 
Sbjct: 411 CKVSMLGPAIYLMEDLKSRGITINKTMRTILIDGFCQVGEISKAKQILKSMFEDGIDPDV 470

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           +TYS L+ G+ R   +        ++  RM++   L  N+  +  L+   C+ GYV E  
Sbjct: 471 ITYSALINGMCRMAKMHETK----EILSRMQKSGILP-NDVLYTTLICYYCKAGYVKEAL 525

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
           +   D+ +   V        ++ +  R G    A      M +  ++   VS+N I+   
Sbjct: 526 KHFVDIYRRGLVANPVIHNALLHAFYREGMITEAEHFRQYMSRMNISFDSVSFNRIIDSY 585

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
           C  G  + A+ + ++ +++GY P+  TY+ L+ GLC    L +AR+ +  +L        
Sbjct: 586 CHRGNIVGAFSVYDDMVRYGYSPNVCTYQNLLRGLCQGGHLVQARQFMSCLLDIPFAIDE 645

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
           +  N  L  +C      E L++   M++  C PD+ T   +++GFC+ G+I  AL +L  
Sbjct: 646 KTFNALLLGICRYGTLDEALDLCEKMIKNNCLPDIHTYTILLSGFCRKGKILPALVILQ- 704

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
           M+  K   PD V +T ++ GL+N G+++ A  + ++++ + G     + YN+++ G  + 
Sbjct: 705 MMLEKGVVPDTVAYTCLLNGLINEGQVKAASYVFHEIICKEGLYADCIAYNSLMNGYLKS 764

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY 424
           R V   K + + M    V  +S +Y I++ G  +  Q  ++   +  +V      DN  Y
Sbjct: 765 RNVNTIKRMMSDMYQNEVYPNSASYNILMHGYVKRGQFSKSLYLYKYMVRKGIRPDNVTY 824

Query: 425 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484
             +I GL   G I  AV FL ++V  G+ P+ + ++++I    + S    A Q+   M+ 
Sbjct: 825 RLLILGLSECGLIDIAVKFLEKMVLEGIFPDRLVFDILITAFSEKSKMHNALQVFNCMKW 884

Query: 485 NGLNPDAVTW 494
             ++P + T+
Sbjct: 885 LHMSPSSKTF 894



 Score =  181 bits (460), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 134/532 (25%), Positives = 243/532 (45%), Gaps = 42/532 (7%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC      +A  +   MKS  H+ N V+Y T++H Y + G    A  V ++M    V
Sbjct: 233 LNSLCTNGEFRKAEDMLQKMKS-CHISNSVTYNTILHWYVKKGRFKAALCVLEDMERDSV 291

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             +  TY++++  + R +   RA    F L +RM+ ++DL+ +   +  L++   REG +
Sbjct: 292 QADVYTYNIMIDKLCRIKRSTRA----FLLLKRMR-KDDLTPDECTYNTLINGFFREGKI 346

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           N    +   M +   V        MID  CR+ R   A  ++  M+  G+ PS ++Y+++
Sbjct: 347 NHARYVFNHMLRQNLVPSVATYTTMIDGYCRNRRIDKALSILSEMQITGVMPSELTYSAL 406

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++G CK      A  L+E+    G   ++    +L++G C   ++ KA+++L+ M     
Sbjct: 407 LNGYCKVSMLGPAIYLMEDLKSRGITINKTMRTILIDGFCQVGEISKAKQILKSMFEDGI 466

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                  +  +  +C +    E   +L  M ++   P+ +   T+I  +CK G ++EALK
Sbjct: 467 DPDVITYSALINGMCRMAKMHETKEILSRMQKSGILPNDVLYTTLICYYCKAGYVKEALK 526

Query: 301 VLNDMV-AGKFCAP---------------------------------DAVTFTTIIFGLL 326
              D+   G    P                                 D+V+F  II    
Sbjct: 527 HFVDIYRRGLVANPVIHNALLHAFYREGMITEAEHFRQYMSRMNISFDSVSFNRIIDSYC 586

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
           + G I  A + +Y  M + GYSP + TY  +LRGL +   + +A++  +C+L I    D 
Sbjct: 587 HRGNIVGAFS-VYDDMVRYGYSPNVCTYQNLLRGLCQGGHLVQARQFMSCLLDIPFAIDE 645

Query: 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE 446
            T+  ++ G+C    LDEA    + ++  + + D + Y  ++ G CR GKI  A+  L  
Sbjct: 646 KTFNALLLGICRYGTLDEALDLCEKMIKNNCLPDIHTYTILLSGFCRKGKILPALVILQM 705

Query: 447 LVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR-KNGLNPDAVTWRIL 497
           +++ GV P+ V Y  +++G       + A  +  E+  K GL  D + +  L
Sbjct: 706 MLEKGVVPDTVAYTCLLNGLINEGQVKAASYVFHEIICKEGLYADCIAYNSL 757



 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 126/494 (25%), Positives = 233/494 (47%), Gaps = 16/494 (3%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           ++  A  +F  M  +  VP+V +YTT+I GYCR   +D A  +  EM+  GV+P+ LTYS
Sbjct: 345 KINHARYVFNHMLRQNLVPSVATYTTMIDGYCRNRRIDKALSILSEMQITGVMPSELTYS 404

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
            L+ G  +   +  A  LM  L  R      +++N      L+D  C+ G +++  +I +
Sbjct: 405 ALLNGYCKVSMLGPAIYLMEDLKSR-----GITINKTMRTILIDGFCQVGEISKAKQILK 459

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
            M +     +      +I+ +CR  + H    ++  M+K G+ P+ V Y +++   CK G
Sbjct: 460 SMFEDGIDPDVITYSALINGMCRMAKMHETKEILSRMQKSGILPNDVLYTTLICYYCKAG 519

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM----LSKKDVDRT 244
               A +   +  + G + +   +  L+     E  + +A    Q+M    +S   V   
Sbjct: 520 YVKEALKHFVDIYRRGLVANPVIHNALLHAFYREGMITEAEHFRQYMSRMNISFDSVSFN 579

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
           RI + Y    C   N     +V   M++    P+V T   ++ G C+ G + +A + ++ 
Sbjct: 580 RIIDSY----CHRGNIVGAFSVYDDMVRYGYSPNVCTYQNLLRGLCQGGHLVQARQFMSC 635

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
           ++   F A D  TF  ++ G+   G + EAL+L  + M +    P I TY  +L G  R 
Sbjct: 636 LLDIPF-AIDEKTFNALLLGICRYGTLDEALDLC-EKMIKNNCLPDIHTYTILLSGFCRK 693

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH-DNYV 423
            ++  A  +   ML  GVV D+  Y  +++GL    Q+  A   + +I+    ++ D   
Sbjct: 694 GKILPALVILQMMLEKGVVPDTVAYTCLLNGLINEGQVKAASYVFHEIICKEGLYADCIA 753

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y +++ G  +S  ++     + ++  + V PN   YN+++ G  K     ++  + + M 
Sbjct: 754 YNSLMNGYLKSRNVNTIKRMMSDMYQNEVYPNSASYNILMHGYVKRGQFSKSLYLYKYMV 813

Query: 484 KNGLNPDAVTWRIL 497
           + G+ PD VT+R+L
Sbjct: 814 RKGIRPDNVTYRLL 827



 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 138/600 (23%), Positives = 254/600 (42%), Gaps = 107/600 (17%)

Query: 1    MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
            +D  C +  + +A ++   M   G  P+V++Y+ LI+G CR  +M    ++   M+  G+
Sbjct: 442  IDGFCQVGEISKAKQILKSMFEDGIDPDVITYSALINGMCRMAKMHETKEILSRMQKSGI 501

Query: 61   LPNSLTYSVLV---------------------RGVLRTRDVERANVLMFKLWERMKEEE- 98
            LPN + Y+ L+                     RG++    +  A +  F     + E E 
Sbjct: 502  LPNDVLYTTLICYYCKAGYVKEALKHFVDIYRRGLVANPVIHNALLHAFYREGMITEAEH 561

Query: 99   --------DLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQ-GKSVNEEFACGH--MID 147
                    ++S ++ +F  ++DS C  G +   F + +DM + G S N    C +  ++ 
Sbjct: 562  FRQYMSRMNISFDSVSFNRIIDSYCHRGNIVGAFSVYDDMVRYGYSPN---VCTYQNLLR 618

Query: 148  SLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLP 207
             LC+ G    A + +  +          ++N+++ G+C++G    A  L E+ I+   LP
Sbjct: 619  GLCQGGHLVQARQFMSCLLDIPFAIDEKTFNALLLGICRYGTLDEALDLCEKMIKNNCLP 678

Query: 208  SEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTR---------------------- 245
              HTY +L+ G C +  +  A  +LQ ML K  V  T                       
Sbjct: 679  DIHTYTILLSGFCRKGKILPALVILQMMLEKGVVPDTVAYTCLLNGLINEGQVKAASYVF 738

Query: 246  ---ICNIYLRALCLI-----------KNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK 291
               IC   L A C+            +N   +  ++  M Q +  P+  + N +++G+ K
Sbjct: 739  HEIICKEGLYADCIAYNSLMNGYLKSRNVNTIKRMMSDMYQNEVYPNSASYNILMHGYVK 798

Query: 292  MGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQ-----VMPQR- 345
             G+  ++L +   MV  K   PD VT+  +I GL   G I  A+  L +     + P R 
Sbjct: 799  RGQFSKSLYLYKYMVR-KGIRPDNVTYRLLILGLSECGLIDIAVKFLEKMVLEGIFPDRL 857

Query: 346  ----------------------------GYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCM 377
                                          SP   T++A++ GL R   ++ + +V + M
Sbjct: 858  VFDILITAFSEKSKMHNALQVFNCMKWLHMSPSSKTFSAMINGLIRKGYLDHSHKVLHEM 917

Query: 378  LGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKI 437
            L +G+  + T Y  +++  C   ++D A R  +++     +      +++I+GLCR GK+
Sbjct: 918  LQVGLQPNHTHYIALVNAKCRVGEIDRAFRLKEEMKAIGIVPAEVAESSIIRGLCRCGKL 977

Query: 438  HEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
             EAV     ++ SG+ P +  +  ++   CK S   +A  + R M    L  D V++ +L
Sbjct: 978  EEAVIVFSSMMRSGMVPTVATFTTLMHSLCKESKIADALHLKRLMELCRLRVDVVSYNVL 1037



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 120/491 (24%), Positives = 216/491 (43%), Gaps = 48/491 (9%)

Query: 4    LCGLSRVG---EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
            L G+ R G   EA  L   M     +P++ +YT L+ G+CR G++  A  +   M   GV
Sbjct: 652  LLGICRYGTLDEALDLCEKMIKNNCLPDIHTYTILLSGFCRKGKILPALVILQMMLEKGV 711

Query: 61   LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            +P+++ Y+ L+ G++    V+ A+ +  ++  +    E L  +  A+ +L++   +   V
Sbjct: 712  VPDTVAYTCLLNGLINEGQVKAASYVFHEIICK----EGLYADCIAYNSLMNGYLKSRNV 767

Query: 121  NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            N + R+  DM Q    NE +                               P+  SYN +
Sbjct: 768  NTIKRMMSDMYQ----NEVY-------------------------------PNSASYNIL 792

Query: 181  VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGL--CGESDLEKARKVLQFMLSK 238
            +HG  K G   ++  L +  ++ G  P   TY++L+ GL  CG  D+  A K L+ M+ +
Sbjct: 793  MHGYVKRGQFSKSLYLYKYMVRKGIRPDNVTYRLLILGLSECGLIDI--AVKFLEKMVLE 850

Query: 239  KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
                   + +I + A          L V   M      P   T + +ING  + G ++ +
Sbjct: 851  GIFPDRLVFDILITAFSEKSKMHNALQVFNCMKWLHMSPSSKTFSAMINGLIRKGYLDHS 910

Query: 299  LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
             KVL++M+      P+   +  ++     VG I  A  L  + M   G  P  V  ++++
Sbjct: 911  HKVLHEMLQVGL-QPNHTHYIALVNAKCRVGEIDRAFRL-KEEMKAIGIVPAEVAESSII 968

Query: 359  RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
            RGL R  ++EEA  VF+ M+  G+V    T+  ++  LC+ +++ +A      +      
Sbjct: 969  RGLCRCGKLEEAVIVFSSMMRSGMVPTVATFTTLMHSLCKESKIADALHLKRLMELCRLR 1028

Query: 419  HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI 478
             D   Y  +I GLC+   I +A+    E+   G+ PNI  Y  +          +   ++
Sbjct: 1029 VDVVSYNVLITGLCKDKHISDALDLYGEMKSKGLWPNITTYITLTGAMYSTGRVQNGEEL 1088

Query: 479  LREMRKNGLNP 489
            L ++ + GL P
Sbjct: 1089 LEDIEERGLIP 1099



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 93/340 (27%), Positives = 153/340 (45%), Gaps = 38/340 (11%)

Query: 158 ASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVE 217
           A+  V  M   G   S VS N+I++ L + G     +  L E +   +     T  +L+ 
Sbjct: 175 AAVAVLFMDDCGFKASPVSCNTILNALVEEGESKHVWLFLRESLARKFPLGVTTCNILLN 234

Query: 218 GLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQP 277
            LC   +  KA  +LQ M S                 C I N                  
Sbjct: 235 SLCTNGEFRKAEDMLQKMKS-----------------CHISNS----------------- 260

Query: 278 DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNL 337
             +T NT+++ + K GR + AL VL DM      A D  T+  +I  L  + R   A  L
Sbjct: 261 --VTYNTILHWYVKKGRFKAALCVLEDMERDSVQA-DVYTYNIMIDKLCRIKRSTRAF-L 316

Query: 338 LYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLC 397
           L + M +   +P   TYN ++ G FR  ++  A+ VFN ML   +V    TY  +IDG C
Sbjct: 317 LLKRMRKDDLTPDECTYNTLINGFFREGKINHARYVFNHMLRQNLVPSVATYTTMIDGYC 376

Query: 398 ESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIV 457
            + ++D+A     ++     +     Y+A++ G C+   +  A++ + +L   G+T N  
Sbjct: 377 RNRRIDKALSILSEMQITGVMPSELTYSALLNGYCKVSMLGPAIYLMEDLKSRGITINKT 436

Query: 458 CYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
              ++IDG C++    +A QIL+ M ++G++PD +T+  L
Sbjct: 437 MRTILIDGFCQVGEISKAKQILKSMFEDGIDPDVITYSAL 476



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 106/458 (23%), Positives = 217/458 (47%), Gaps = 30/458 (6%)

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           N + + +LV+  ++ R V  A V +  + +   +   +S N      ++++L  EG    
Sbjct: 155 NHVVFELLVKAYVKERKVLDAAVAVLFMDDCGFKASPVSCNT-----ILNALVEEGESKH 209

Query: 123 VF-----RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
           V+      +A   P G +      C  +++SLC +G    A  ++  M+   ++ S V+Y
Sbjct: 210 VWLFLRESLARKFPLGVT-----TCNILLNSLCTNGEFRKAEDMLQKMKSCHISNS-VTY 263

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM-- 235
           N+I+H   K G    A  +LE+  +       +TY ++++ LC      +A  +L+ M  
Sbjct: 264 NTILHWYVKKGRFKAALCVLEDMERDSVQADVYTYNIMIDKLCRIKRSTRAFLLLKRMRK 323

Query: 236 --LSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMG 293
             L+  +     + N + R    I +   + N    ML+    P V T  T+I+G+C+  
Sbjct: 324 DDLTPDECTYNTLINGFFRE-GKINHARYVFN---HMLRQNLVPSVATYTTMIDGYCRNR 379

Query: 294 RIEEALKVLNDM-VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIV 352
           RI++AL +L++M + G    P  +T++ ++ G   V  +  A+ L+ + +  RG +    
Sbjct: 380 RIDKALSILSEMQITG--VMPSELTYSALLNGYCKVSMLGPAIYLM-EDLKSRGITINKT 436

Query: 353 TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI 412
               ++ G  ++  + +AK++   M   G+  D  TY+ +I+G+C   ++ E K     +
Sbjct: 437 MRTILIDGFCQVGEISKAKQILKSMFEDGIDPDVITYSALINGMCRMAKMHETKEILSRM 496

Query: 413 VWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMK 472
                + ++ +Y  +I   C++G + EA+    ++   G+  N V +N ++    +  M 
Sbjct: 497 QKSGILPNDVLYTTLICYYCKAGYVKEALKHFVDIYRRGLVANPVIHNALLHAFYREGMI 556

Query: 473 REAYQILREMRKNGLNPDAVTW-RILDKLHGNRGNDFG 509
            EA    + M +  ++ D+V++ RI+D  + +RGN  G
Sbjct: 557 TEAEHFRQYMSRMNISFDSVSFNRIIDS-YCHRGNIVG 593



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 99/206 (48%), Gaps = 8/206 (3%)

Query: 6    GLSRVG---EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
            GL R G    +HK+  +M   G  PN   Y  L++  CR GE+D A+++ +EM+  G++P
Sbjct: 900  GLIRKGYLDHSHKVLHEMLQVGLQPNHTHYIALVNAKCRVGEIDRAFRLKEEMKAIGIVP 959

Query: 63   NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
              +  S ++RG+ R   +E A V++F    R      +    A F  L+ SLC+E  + +
Sbjct: 960  AEVAESSIIRGLCRCGKLEEA-VIVFSSMMR----SGMVPTVATFTTLMHSLCKESKIAD 1014

Query: 123  VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
               +   M   +   +  +   +I  LC+      A  +   M+ +GL P++ +Y ++  
Sbjct: 1015 ALHLKRLMELCRLRVDVVSYNVLITGLCKDKHISDALDLYGEMKSKGLWPNITTYITLTG 1074

Query: 183  GLCKHGGCMRAYQLLEEGIQFGYLPS 208
             +   G      +LLE+  + G +P+
Sbjct: 1075 AMYSTGRVQNGEELLEDIEERGLIPA 1100



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 82/338 (24%), Positives = 137/338 (40%), Gaps = 66/338 (19%)

Query: 218 GLCGESDLEKARKVLQFMLSKKDVDRTRI-----------CNIYLRALCLIK-------- 258
           G  G+SD + A K+L  ++ +  +DR                ++ +A+ ++K        
Sbjct: 77  GSLGKSDGKLALKILSSIVERSGLDRITYVYCMAVPILIQAQMHSQAMSVLKHLAVTGFS 136

Query: 259 ---------------NPT-----ELL--------------NVLVFMLQTQCQPDVITLNT 284
                          +PT     ELL                ++FM     +   ++ NT
Sbjct: 137 CTAIFTSLLRTISRFDPTNHVVFELLVKAYVKERKVLDAAVAVLFMDDCGFKASPVSCNT 196

Query: 285 VINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF-GLLNVGRIQEALNLLYQVMP 343
           ++N   + G  +     L + +A KF  P  VT   I+   L   G  ++A ++L ++  
Sbjct: 197 ILNALVEEGESKHVWLFLRESLARKF--PLGVTTCNILLNSLCTNGEFRKAEDMLQKM-- 252

Query: 344 QRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLD 403
           +  +    VTYN +L    +  R + A  V   M    V AD  TY I+ID LC   +  
Sbjct: 253 KSCHISNSVTYNTILHWYVKKGRFKAALCVLEDMERDSVQADVYTYNIMIDKLCRIKRST 312

Query: 404 EA----KRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCY 459
            A    KR   D + P    D   Y  +I G  R GKI+ A +    ++   + P++  Y
Sbjct: 313 RAFLLLKRMRKDDLTP----DECTYNTLINGFFREGKINHARYVFNHMLRQNLVPSVATY 368

Query: 460 NVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
             +IDG C+     +A  IL EM+  G+ P  +T+  L
Sbjct: 369 TTMIDGYCRNRRIDKALSILSEMQITGVMPSELTYSAL 406



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 82/169 (48%), Gaps = 5/169 (2%)

Query: 5    CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
            C +  +  A +L  +MK+ G VP  V+ +++I G CR G+++ A  VF  M   G++P  
Sbjct: 937  CRVGEIDRAFRLKEEMKAIGIVPAEVAESSIIRGLCRCGKLEEAVIVFSSMMRSGMVPTV 996

Query: 65   LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
             T++ L+  + +   +  A+ L  K   R+ E   L V+  ++  L+  LC++ ++++  
Sbjct: 997  ATFTTLMHSLCKESKI--ADALHLK---RLMELCRLRVDVVSYNVLITGLCKDKHISDAL 1051

Query: 125  RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPS 173
             +  +M              +  ++  +GR      ++  + +RGL P+
Sbjct: 1052 DLYGEMKSKGLWPNITTYITLTGAMYSTGRVQNGEELLEDIEERGLIPA 1100


>gi|359476104|ref|XP_003631789.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Vitis vinifera]
          Length = 877

 Score =  201 bits (512), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 145/525 (27%), Positives = 247/525 (47%), Gaps = 33/525 (6%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           EA +L  +M + G   N+V  T+L+ GYC  G +D A  +F+++   G+ PN +TYSVL+
Sbjct: 348 EALRLKEEMINCGKPMNLVVATSLMKGYCAQGNLDSALNLFNKITEDGLFPNKVTYSVLI 407

Query: 72  RGVLRTRDVERANVLMFK------------------------LWER----MKEEEDLSVN 103
            G   + ++E+A+ L  +                        LWE       E  D  V 
Sbjct: 408 EGCCNSGNIEKASELYTQMKLNGIPPSVFNVNSLLRGYLKAPLWEEASKLFDEAVDCGVA 467

Query: 104 NAAFANLVDS-LCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVV 162
           N    N++ S LC+ G ++E   + ++M     V    +   MI   CR G    AS V 
Sbjct: 468 NIFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASSVF 527

Query: 163 YVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGE 222
             M  R L P++V+Y+ ++ G  K G   +A  L ++ +     P++ T+  ++ GLC  
Sbjct: 528 SDMLARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKV 587

Query: 223 SDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITL 282
             + +AR  L+  L +  +      N  +       N    L V   M +    P+V+T 
Sbjct: 588 GQMSEARDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTY 647

Query: 283 NTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVM 342
            ++INGFCK  RI+ ALK  ++M   K    D   ++ +I G      ++ A +L ++++
Sbjct: 648 TSLINGFCKSNRIDLALKTRDEMRE-KGLELDVTAYSALIDGFCKRRDMESAQDLFFELL 706

Query: 343 PQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQL 402
            + G SP  + YN+++ G   L  +E A   +  M+   +  D  TY  +IDGL +  +L
Sbjct: 707 -EVGLSPNRIVYNSMISGFRDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGLLKEGRL 765

Query: 403 DEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVV 462
             A   + +++    + D   +  ++ GLC  G++  A   L E+    +TP+++ YN +
Sbjct: 766 VFASDLYMEMLSKGIVPDIITFHVLVNGLCNKGQLENARKILEEMDRKNMTPSVLIYNTL 825

Query: 463 IDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL--DKLHGNRG 505
           I G  +    +EA+ +  EM   GL PD VT+ IL   K  G+R 
Sbjct: 826 IAGYFREGNLKEAFTLHDEMLDRGLVPDDVTYDILINGKFKGDRS 870



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 118/402 (29%), Positives = 207/402 (51%), Gaps = 21/402 (5%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M  LC   ++ EA  L  +M ++G VPNVVSY  +I G+CR G MD+A  VF +M    +
Sbjct: 476 MSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASSVFSDMLARDL 535

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNA----AFANLVDSLCR 116
            PN +TYS+L+ G  +  D E+A      L+++M     LS+N A     F  +++ LC+
Sbjct: 536 KPNVVTYSILIDGNFKKGDSEKA----LDLFDQM-----LSLNIAPTDFTFNTIINGLCK 586

Query: 117 EGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVS 176
            G ++E     ++  +   +        ++D   + G    A  V   M + G++P++V+
Sbjct: 587 VGQMSEARDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVT 646

Query: 177 YNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFML 236
           Y S+++G CK      A +  +E  + G       Y  L++G C   D+E A+ +  F L
Sbjct: 647 YTSLINGFCKSNRIDLALKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQDLF-FEL 705

Query: 237 SKKDVDRTRICNIYLRALCLIKNPTELLNVLVF---MLQTQCQPDVITLNTVINGFCKMG 293
            +  +   RI  +Y   +   ++   +   LV+   M+  +   D+ T  T+I+G  K G
Sbjct: 706 LEVGLSPNRI--VYNSMISGFRDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGLLKEG 763

Query: 294 RIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVT 353
           R+  A  +  +M++ K   PD +TF  ++ GL N G+++ A  +L + M ++  +P ++ 
Sbjct: 764 RLVFASDLYMEMLS-KGIVPDIITFHVLVNGLCNKGQLENARKILEE-MDRKNMTPSVLI 821

Query: 354 YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG 395
           YN ++ G FR   ++EA  + + ML  G+V D  TY I+I+G
Sbjct: 822 YNTLIAGYFREGNLKEAFTLHDEMLDRGLVPDDVTYDILING 863



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 123/491 (25%), Positives = 225/491 (45%), Gaps = 10/491 (2%)

Query: 8   SRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTY 67
           +R+  A   F  M  +  +P V     L+    R   +     ++++M   G+  +  T 
Sbjct: 204 NRIENAIDCFNAMICQDVIPWVPYMNILLTALVRRNMIGELRDLYNKMVLRGIYGDHFTV 263

Query: 68  SVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIA 127
            V+VR  L+   VE A     + + R  +E  + ++  A++ ++ ++C++   N    + 
Sbjct: 264 HVMVRACLKEGRVEEA-----EEYFRETKERGVKLDAGAYSIIIQAVCKKPNSNLGLELL 318

Query: 128 EDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKH 187
           E+M +   V  E     +I +    G    A R+   M   G   +LV   S++ G C  
Sbjct: 319 EEMKERGWVPSEATFTSVIVACVAQGNMVEALRLKEEMINCGKPMNLVVATSLMKGYCAQ 378

Query: 188 GGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC 247
           G    A  L  +  + G  P++ TY VL+EG C   ++EKA ++   M            
Sbjct: 379 GNLDSALNLFNKITEDGLFPNKVTYSVLIEGCCNSGNIEKASELYTQMKLNGIPPSVFNV 438

Query: 248 NIYLRALCLIKNPTELLNVLVFMLQTQCQ-PDVITLNTVINGFCKMGRIEEALKVLNDMV 306
           N  LR    +K P       +F     C   ++ T N +++  CK G+++EA  +L++MV
Sbjct: 439 NSLLRG--YLKAPLWEEASKLFDEAVDCGVANIFTYNIMMSWLCKGGKMDEACSLLDNMV 496

Query: 307 AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 366
             +   P+ V++  +I G    G +  A + ++  M  R   P +VTY+ ++ G F+   
Sbjct: 497 -NQGMVPNVVSYNDMILGHCRKGNMDMA-SSVFSDMLARDLKPNVVTYSILIDGNFKKGD 554

Query: 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAA 426
            E+A ++F+ ML + +     T+  +I+GLC+  Q+ EA+    + +    I     Y +
Sbjct: 555 SEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQMSEARDKLKNFLEEGFIPSCMTYNS 614

Query: 427 MIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG 486
           ++ G  + G I  A+    E+ + GV+PN+V Y  +I+G CK +    A +   EMR+ G
Sbjct: 615 IVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNRIDLALKTRDEMREKG 674

Query: 487 LNPDAVTWRIL 497
           L  D   +  L
Sbjct: 675 LELDVTAYSAL 685



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 88/417 (21%), Positives = 154/417 (36%), Gaps = 83/417 (19%)

Query: 149 LCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPS 208
           L RS   HG +R +               N  V G       +    L+    +F +   
Sbjct: 144 LMRSPETHGHARKLL--------------NRYVSGDSDPSPVVFVDHLINCAKRFDFELD 189

Query: 209 EHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLV 268
              +  L+      + +E A      M+ +  +      NI L AL       EL ++  
Sbjct: 190 HRVFNYLLNAYIRANRIENAIDCFNAMICQDVIPWVPYMNILLTALVRRNMIGELRDLYN 249

Query: 269 FMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND-------MVAGKFC---------- 311
            M+      D  T++ ++    K GR+EEA +   +       + AG +           
Sbjct: 250 KMVLRGIYGDHFTVHVMVRACLKEGRVEEAEEYFRETKERGVKLDAGAYSIIIQAVCKKP 309

Query: 312 -----------------APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTY 354
                             P   TFT++I   +  G + EAL  L + M   G    +V  
Sbjct: 310 NSNLGLELLEEMKERGWVPSEATFTSVIVACVAQGNMVEALR-LKEEMINCGKPMNLVVA 368

Query: 355 NAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI-- 412
            ++++G      ++ A  +FN +   G+  +  TY+++I+G C S  +++A   +  +  
Sbjct: 369 TSLMKGYCAQGNLDSALNLFNKITEDGLFPNKVTYSVLIEGCCNSGNIEKASELYTQMKL 428

Query: 413 --VWPSNIHDN------------------------------YVYAAMIKGLCRSGKIHEA 440
             + PS  + N                              + Y  M+  LC+ GK+ EA
Sbjct: 429 NGIPPSVFNVNSLLRGYLKAPLWEEASKLFDEAVDCGVANIFTYNIMMSWLCKGGKMDEA 488

Query: 441 VHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
              L  +V+ G+ PN+V YN +I G C+      A  +  +M    L P+ VT+ IL
Sbjct: 489 CSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASSVFSDMLARDLKPNVVTYSIL 545



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 97/225 (43%), Gaps = 2/225 (0%)

Query: 282 LNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQV 341
            N ++N + +  RIE A+   N M+         V +  I+   L    +   L  LY  
Sbjct: 193 FNYLLNAYIRANRIENAIDCFNAMICQDVIP--WVPYMNILLTALVRRNMIGELRDLYNK 250

Query: 342 MPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ 401
           M  RG      T + ++R   +  RVEEA+E F      GV  D+  Y+I+I  +C+   
Sbjct: 251 MVLRGIYGDHFTVHVMVRACLKEGRVEEAEEYFRETKERGVKLDAGAYSIIIQAVCKKPN 310

Query: 402 LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNV 461
            +      +++     +     + ++I      G + EA+    E+++ G   N+V    
Sbjct: 311 SNLGLELLEEMKERGWVPSEATFTSVIVACVAQGNMVEALRLKEEMINCGKPMNLVVATS 370

Query: 462 VIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           ++ G C       A  +  ++ ++GL P+ VT+ +L +   N GN
Sbjct: 371 LMKGYCAQGNLDSALNLFNKITEDGLFPNKVTYSVLIEGCCNSGN 415


>gi|359488005|ref|XP_002263693.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 586

 Score =  201 bits (511), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 129/478 (26%), Positives = 226/478 (47%), Gaps = 8/478 (1%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M S G  P+V +   LI+ +C    +  A+ V  ++   G  P++ T++ L+RG+     
Sbjct: 95  MDSFGIPPDVYTLNILINSFCHLNRLGFAFSVLAKILKLGHQPDTATFTTLIRGLCVEGK 154

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
           +  A      L+++M  E     N   +  L++ LC+ G  N   R+   M QG    + 
Sbjct: 155 IGDA----LHLFDKMIGE-GFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDV 209

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
                +IDSLC+  +   A  +   M  +G++P + +Y S++H LC          LL +
Sbjct: 210 VVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQ 269

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
            I    +P    +  +V+ LC E  + +A  V+  M+ +         N  +   CL   
Sbjct: 270 MINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSE 329

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
             E + V   M+     P+VI+ NT+ING+CK+ R+++A  +  +M   +   P+ VT+ 
Sbjct: 330 MDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKEL-IPNTVTYN 388

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
           T++    +VGR+Q+A+ L ++ M   G  P + TY  +L  L +   ++EA  +   + G
Sbjct: 389 TLMH-XCHVGRLQDAIALFHE-MVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEG 446

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
             +  D   Y IVIDG+C + +L+ A+  + ++       +   Y  MI GLCR G + E
Sbjct: 447 SNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDE 506

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           A     E+  +G +P+   YN +  G  +      A Q+L+EM   G + D  T  +L
Sbjct: 507 ANKLFMEMDGNGCSPDGCTYNTITQGLLQNKEALRAIQLLQEMLARGFSADVSTTTLL 564



 Score =  187 bits (476), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 125/483 (25%), Positives = 240/483 (49%), Gaps = 12/483 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C L+R+G A  +   +   GH P+  ++TTLI G C  G++  A  +FD+M   G 
Sbjct: 111 INSFCHLNRLGFAFSVLAKILKLGHQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGF 170

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +TY  L+ G+ +  +   A  L+     R  E+ +   +   + +++DSLC++  V
Sbjct: 171 QPNVVTYGTLINGLCKVGNTNAAIRLL-----RSMEQGNCQPDVVVYTSIIDSLCKDRQV 225

Query: 121 NEVFRIAEDMPQGKSVNEE-FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
            E F +   M  G+ ++ + F    +I SLC        + ++  M    + P +V +++
Sbjct: 226 TEAFNLFSKM-VGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFST 284

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           +V  LCK G    A+ +++  I  G  P+  TY  L++G C +S++++A KV   M+   
Sbjct: 285 VVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNG 344

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                   N  +   C I+   +   +   M Q +  P+ +T NT+++  C +GR+++A+
Sbjct: 345 YAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHX-CHVGRLQDAI 403

Query: 300 KVLNDMVA-GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
            + ++MVA G+   PD  T+  ++  L     + EA+ LL + +      P I  Y  V+
Sbjct: 404 ALFHEMVAHGQI--PDLATYRILLDYLCKKSHLDEAMALL-KTIEGSNMDPDIQIYTIVI 460

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
            G+ R   +E A+++F+ +   G+  +  TY I+I+GLC    LDEA + + ++      
Sbjct: 461 DGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCS 520

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI 478
            D   Y  + +GL ++ +   A+  L E++  G + ++    ++++  C   + +   QI
Sbjct: 521 PDGCTYNTITQGLLQNKEALRAIQLLQEMLARGFSADVSTTTLLVEMLCDDKLDQSVKQI 580

Query: 479 LRE 481
           L E
Sbjct: 581 LSE 583



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 100/391 (25%), Positives = 189/391 (48%), Gaps = 3/391 (0%)

Query: 107 FANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMR 166
           F  L+ S+ +      VF ++  M       + +    +I+S C   R   A  V+  + 
Sbjct: 72  FNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNILINSFCHLNRLGFAFSVLAKIL 131

Query: 167 KRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLE 226
           K G  P   ++ +++ GLC  G    A  L ++ I  G+ P+  TY  L+ GLC   +  
Sbjct: 132 KLGHQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTN 191

Query: 227 KARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVI 286
            A ++L+ M          +    + +LC  +  TE  N+   M+     PD+ T  ++I
Sbjct: 192 AAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLI 251

Query: 287 NGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
           +  C +   +    +LN M+  K   PD V F+T++  L   G+I EA +++  +M  RG
Sbjct: 252 HSLCNLCEWKHVTTLLNQMINSKI-MPDVVIFSTVVDALCKEGKITEAHDVV-DMMIIRG 309

Query: 347 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
             P +VTYNA++ G      ++EA +VF+ M+  G   +  +Y  +I+G C+  ++D+A 
Sbjct: 310 VEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKAT 369

Query: 407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466
             ++++     I +   Y  ++   C  G++ +A+   +E+V  G  P++  Y +++D  
Sbjct: 370 YLFEEMCQKELIPNTVTYNTLMH-XCHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYL 428

Query: 467 CKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           CK S   EA  +L+ +  + ++PD   + I+
Sbjct: 429 CKKSHLDEAMALLKTIEGSNMDPDIQIYTIV 459



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 94/326 (28%), Positives = 158/326 (48%), Gaps = 2/326 (0%)

Query: 172 PSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKV 231
           PS V +N ++  + K       + L  +   FG  P  +T  +L+   C  + L  A  V
Sbjct: 67  PSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNILINSFCHLNRLGFAFSV 126

Query: 232 LQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK 291
           L  +L       T      +R LC+     + L++   M+    QP+V+T  T+ING CK
Sbjct: 127 LAKILKLGHQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCK 186

Query: 292 MGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGI 351
           +G    A+++L  M  G  C PD V +T+II  L    ++ EA NL  +++ Q G SP I
Sbjct: 187 VGNTNAAIRLLRSMEQGN-CQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQ-GISPDI 244

Query: 352 VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDD 411
            TY +++  L  L   +    + N M+   ++ D   ++ V+D LC+  ++ EA    D 
Sbjct: 245 FTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDM 304

Query: 412 IVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSM 471
           ++      +   Y A++ G C   ++ EAV     +V +G  PN++ YN +I+G CK+  
Sbjct: 305 MIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQR 364

Query: 472 KREAYQILREMRKNGLNPDAVTWRIL 497
             +A  +  EM +  L P+ VT+  L
Sbjct: 365 MDKATYLFEEMCQKELIPNTVTYNTL 390


>gi|302759537|ref|XP_002963191.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
 gi|300168459|gb|EFJ35062.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
          Length = 628

 Score =  201 bits (511), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 139/511 (27%), Positives = 251/511 (49%), Gaps = 34/511 (6%)

Query: 13  AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVR 72
           A++ F  M+ RG+ P+  +Y+ ++ G C+ GE+D A ++  ++R  GV  N +TYSV++ 
Sbjct: 57  AYEKFQQMQRRGYPPDDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVID 116

Query: 73  GVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQ 132
           G  +   V+ A     ++++ M        +   F +L+  LC    ++E F + E M +
Sbjct: 117 GCCKASRVDDA----LEIFKTMSSGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAK 172

Query: 133 GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG---- 188
                   +   ++D LC++GR   A R+   M ++   P LV+Y S V GLCK      
Sbjct: 173 AGCEPNVISYSTLLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAE 232

Query: 189 GCMRAYQLLEEGIQFGYLP-------------SEHTYKVLVEGLCGESDLEKARKVLQFM 235
            C    +++ +G +   +              +E     ++E LC    L++A K  + M
Sbjct: 233 ACDCCRKMVTKGSKADAVAFSTVIGILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEM 292

Query: 236 LSKKDVDRTRICNIYLRALCLIKNPTELLNVLVF-----MLQTQCQPDVITLNTVINGFC 290
           +S+       + N  + A+C  K   +   VL+F     M +  C P++ T N +++  C
Sbjct: 293 ISRNHPPSAELFNTLIHAVCKSKRLPD--GVLLFQRMKSMKEFYCPPNLETYNIMVDNLC 350

Query: 291 KMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG 350
           K  +++EA +++N+M A    +PD VT++ ++ GL  +G++  A +LL + M + G  P 
Sbjct: 351 KAKQLDEAQELVNEM-ANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEE-MSKEGVFPD 408

Query: 351 IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD 410
             T  ++L  L +  +V+ A      M   G   D  TY  ++DGLC++ ++DEA  F  
Sbjct: 409 SFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLA 468

Query: 411 DIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLS 470
            +V      D + Y  +I  LCRSG+   A     E+V  GV P+ V Y+ ++DG  +  
Sbjct: 469 KMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLDGLARNG 528

Query: 471 MKREAYQILREMRKNGLNPDAVTWR-ILDKL 500
           ++  A ++L   + +   PD V  + +LD L
Sbjct: 529 LEDLALELL---KTSLCKPDFVMHKMVLDGL 556



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 137/513 (26%), Positives = 238/513 (46%), Gaps = 33/513 (6%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRH-CGVLP 62
           LC    + +A +L   ++  G   NV++Y+ +I G C+   +D A ++F  M    G +P
Sbjct: 83  LCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEIFKTMSSGGGCVP 142

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           + +T++ L++G+     +  A    F L+E M  +     N  +++ L+D LC+ G ++E
Sbjct: 143 DVVTFNSLLKGLCSGERMSEA----FVLFEYMA-KAGCEPNVISYSTLLDGLCKAGRLDE 197

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
             R+ E+M +   V +  A    +  LC++ R   A      M  +G     V++++++ 
Sbjct: 198 ACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIG 257

Query: 183 GLCKHGGCMRAY-----------------QLLEEGIQFGYLPSEHTYKVLVEGLCGESDL 225
            LCK G    A                  +  EE I   + PS   +  L+  +C    L
Sbjct: 258 ILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRL 317

Query: 226 EKARKVLQFMLSKKDV---DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITL 282
                + Q M S K+          NI +  LC  K   E   ++  M      PDV+T 
Sbjct: 318 PDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTY 377

Query: 283 NTVINGFCKMGRIEEALKVLNDMVA-GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQV 341
           + +++G CK+G+++ A  +L +M   G F  PD+ T  +I+  L   G++  AL+ L + 
Sbjct: 378 SALVDGLCKLGKLDRACDLLEEMSKEGVF--PDSFTDASILNALSKAGKVDYALSHL-ET 434

Query: 342 MPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ 401
           M  RG +P +VTYN +L GL +  R++EA      M+      D  +Y I+I  LC S Q
Sbjct: 435 MKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQ 494

Query: 402 LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNV 461
              A   + ++V    + D  +Y +++ GL R+G    A+  L     S   P+ V + +
Sbjct: 495 AAGAHAIFQEMVKRGVLPDTVLYHSLLDGLARNGLEDLALELLKT---SLCKPDFVMHKM 551

Query: 462 VIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
           V+DG CK     +A +++  M   G   DA T+
Sbjct: 552 VLDGLCKAGKAEDACEVVERMADAGFPADAFTY 584



 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 132/455 (29%), Positives = 219/455 (48%), Gaps = 26/455 (5%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R+ EA  LF  M   G  PNV+SY+TL+ G C+ G +D A ++++EM     +P+
Sbjct: 154 LCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEACRLWEEMVEKSCVPD 213

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNA------------AFANLV 111
            + Y+  V G+ +   V  A     K+  +  + + ++ +              A   ++
Sbjct: 214 LVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIGILCKKGHAEEAQNQMI 273

Query: 112 DSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGL- 170
           + LCR G ++E  +  E+M              +I ++C+S R      V+   R + + 
Sbjct: 274 EHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDG--VLLFQRMKSMK 331

Query: 171 ----TPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLE 226
                P+L +YN +V  LCK      A +L+ E   +G  P   TY  LV+GLC    L+
Sbjct: 332 EFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLD 391

Query: 227 KARKVLQFMLSKKDVDRTRICNI-YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTV 285
           +A  +L+ M SK+ V      +   L AL         L+ L  M      PD++T NT+
Sbjct: 392 RACDLLEEM-SKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTL 450

Query: 286 INGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQR 345
           ++G CK GRI+EA+  L  MVA K C PD  ++T II  L   G+   A + ++Q M +R
Sbjct: 451 LDGLCKAGRIDEAITFLAKMVAAK-CTPDVFSYTIIITALCRSGQAAGA-HAIFQEMVKR 508

Query: 346 GYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA 405
           G  P  V Y+++L GL R    + A E+    L      D   + +V+DGLC++ + ++A
Sbjct: 509 GVLPDTVLYHSLLDGLARNGLEDLALELLKTSL---CKPDFVMHKMVLDGLCKAGKAEDA 565

Query: 406 KRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEA 440
               + +       D + Y +++ GL + GK+ +A
Sbjct: 566 CEVVERMADAGFPADAFTYISVVSGLRKLGKVDKA 600



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 123/235 (52%), Gaps = 8/235 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   ++ EA +L  +M + G  P+VV+Y+ L+ G C+ G++D A  + +EM   GV
Sbjct: 346 VDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGV 405

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+S T + ++  + +   V+ A   +  +  R    + ++ N      L+D LC+ G +
Sbjct: 406 FPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYN-----TLLDGLCKAGRI 460

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E       M   K   + F+   +I +LCRSG+  GA  +   M KRG+ P  V Y+S+
Sbjct: 461 DEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSL 520

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM 235
           + GL ++G    A +LL+  +     P    +K++++GLC     E A +V++ M
Sbjct: 521 LDGLARNGLEDLALELLKTSL---CKPDFVMHKMVLDGLCKAGKAEDACEVVERM 572



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 87/181 (48%), Gaps = 1/181 (0%)

Query: 318 FTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCM 377
           +T +   L ++G+I   + L   +  Q+GY   + TYN  L  L +    + A E F  M
Sbjct: 5   YTVVGEVLRHLGKISTIVRLFDWLGRQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQM 64

Query: 378 LGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKI 437
              G   D  TY+IV+ GLC++ +LD+AK     +       +   Y+ +I G C++ ++
Sbjct: 65  QRRGYPPDDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRV 124

Query: 438 HEAVHFLYELVD-SGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRI 496
            +A+     +    G  P++V +N ++ G C      EA+ +   M K G  P+ +++  
Sbjct: 125 DDALEIFKTMSSGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYST 184

Query: 497 L 497
           L
Sbjct: 185 L 185


>gi|302763353|ref|XP_002965098.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
 gi|300167331|gb|EFJ33936.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
          Length = 600

 Score =  201 bits (511), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 130/496 (26%), Positives = 240/496 (48%), Gaps = 14/496 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           L  + ++ EA+K F  M   G  P+V+++TTLIHG+C+ G+  V +K+ ++       P+
Sbjct: 17  LASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHKLLNQALK-RFRPD 75

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
              Y+ ++ G  +  D++         +  +  +  L V   ++  ++  L     ++E 
Sbjct: 76  VFLYTSVIHGYCKAGDLDTG------YFRAVTPKASLDV--ISYTTVIKGLADSKRIDEA 127

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             + E++          A   +ID L ++GR     +    M      P+  +Y  ++ G
Sbjct: 128 CELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMSGSSCVPTRTTYTVVIDG 187

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LCK      A ++ E+ +Q G +P   TY  L++G    S +++ARK+L  ML+K     
Sbjct: 188 LCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPT 247

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                  +   C +    E   V+  M +  C+P +    ++++ +   GR EEA +VL 
Sbjct: 248 AVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLT 307

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           +M A + CAPD + +T++I  L + GR+ EA + ++  M ++G +P  +TY  +++   +
Sbjct: 308 EMTA-RGCAPDVILYTSLIDLLFSTGRVPEARH-VFDSMIEKGCAPDALTYGTIIQNFSK 365

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
           +  VE A E+   M   GV  D   Y  ++DG  +  ++D+A   +D +V  S I  N V
Sbjct: 366 IGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVA-SGIKPNAV 424

Query: 424 -YAAMIKGLCRSGKIHEAVHFLYELVD-SGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
            +  ++ GL + GK   A     E+++   V P +V Y ++IDG  K     EA+   +E
Sbjct: 425 TFNVLMHGLFKDGKTDRAFSLFKEMLEKEEVPPTLVSYTILIDGLGKAGRVSEAFLQFQE 484

Query: 482 MRKNGLNPDAVTWRIL 497
           M   G+ P+  T+  L
Sbjct: 485 MIDRGIIPECHTYTSL 500



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 122/457 (26%), Positives = 218/457 (47%), Gaps = 6/457 (1%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           R+ EA +LF ++K+ G  PNVV+YT +I G  + G ++   K F+EM     +P   TY+
Sbjct: 123 RIDEACELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMSGSSCVPTRTTYT 182

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
           V++ G+ + + +  A     K++E+M ++  +  +   +  L+D   +   ++E  ++ +
Sbjct: 183 VVIDGLCKAQMLPDAC----KVFEQMVQKGCVP-DTITYTTLIDGFSKASKMDEARKLLD 237

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
            M            G ++   C+    + A  V+  MR+RG  P L  + S++      G
Sbjct: 238 VMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKG 297

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
               AYQ+L E    G  P    Y  L++ L     + +AR V   M+ K          
Sbjct: 298 RAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYG 357

Query: 249 IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 308
             ++    I N      +L  M ++   PD    N++++G+ K+ R+++A  V + MVA 
Sbjct: 358 TIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVAS 417

Query: 309 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE 368
               P+AVTF  ++ GL   G+   A +L  +++ +    P +V+Y  ++ GL +  RV 
Sbjct: 418 GI-KPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKEEVPPTLVSYTILIDGLGKAGRVS 476

Query: 369 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI 428
           EA   F  M+  G++ +  TY  +I  L ++ ++ EAK+  +D+V      D   Y+A+I
Sbjct: 477 EAFLQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALI 536

Query: 429 KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDG 465
            GL  S  +  A     E++  G  PN V Y V+  G
Sbjct: 537 TGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVLRRG 573



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 128/480 (26%), Positives = 219/480 (45%), Gaps = 50/480 (10%)

Query: 24  GHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERA 83
           G  P +VSY T+I G     +MD AYK F+ M   G  P+ + ++ L+ G  +    +  
Sbjct: 2   GCEPTIVSYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVG 61

Query: 84  NVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE-VFRIAEDMPQGKSVNEEFAC 142
           + L+ +  +R + +  L      + +++   C+ G ++   FR        K+  +  + 
Sbjct: 62  HKLLNQALKRFRPDVFL------YTSVIHGYCKAGDLDTGYFRAVTP----KASLDVISY 111

Query: 143 GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQ 202
             +I  L  S R   A  +   ++  G +P++V+Y +++ GL K G      +  EE   
Sbjct: 112 TTVIKGLADSKRIDEACELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMSG 171

Query: 203 FGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTE 262
              +P+  TY V+++GLC    L  A KV + M+                          
Sbjct: 172 SSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMV-------------------------- 205

Query: 263 LLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTII 322
                    Q  C PD IT  T+I+GF K  +++EA K+L+ M+  K   P AVT+ +I+
Sbjct: 206 ---------QKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLT-KGPEPTAVTYGSIV 255

Query: 323 FGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGV 382
            G   +  I EA  ++ Q M +RG  PG+  + ++L       R EEA +V   M   G 
Sbjct: 256 HGFCKLDMINEAKEVIAQ-MRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGC 314

Query: 383 VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVH 442
             D   Y  +ID L  + ++ EA+  +D ++      D   Y  +I+   + G +  A  
Sbjct: 315 APDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGE 374

Query: 443 FLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
            L  +  SGV P+   YN ++DG  KL    +A+ +   M  +G+ P+AVT+ +L  +HG
Sbjct: 375 ILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVL--MHG 432



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 102/397 (25%), Positives = 183/397 (46%), Gaps = 8/397 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    + +A K+F  M  +G VP+ ++YTTLI G+ +  +MD A K+ D M   G 
Sbjct: 185 IDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGP 244

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P ++TY  +V G  +   +  A  ++ ++ ER  E          F +L+     +G  
Sbjct: 245 EPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEP-----GLFIFTSLLSYYLSKGRA 299

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E +++  +M       +      +ID L  +GR   A  V   M ++G  P  ++Y +I
Sbjct: 300 EEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTI 359

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +    K G    A ++LE   + G  P    Y  L++G      +++A  V   M++   
Sbjct: 360 IQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGI 419

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQT-QCQPDVITLNTVINGFCKMGRIEEAL 299
                  N+ +  L          ++   ML+  +  P +++   +I+G  K GR+ EA 
Sbjct: 420 KPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKEEVPPTLVSYTILIDGLGKAGRVSEAF 479

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
               +M+  +   P+  T+T++I+ L   GRI EA  L+ + M + G +P +  Y+A++ 
Sbjct: 480 LQFQEMI-DRGIIPECHTYTSLIYSLAKAGRIPEAKKLV-EDMVKLGVNPDVQAYSALIT 537

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 396
           GL     V+ A +VF  M+  G   +  TY ++  G 
Sbjct: 538 GLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVLRRGF 574



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 87/362 (24%), Positives = 163/362 (45%), Gaps = 6/362 (1%)

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
           +I  L    +   A +    M   G  P ++++ +++HG CK G     ++LL + ++  
Sbjct: 13  VISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHKLLNQALK-R 71

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL 264
           + P    Y  ++ G C   DL+      + +  K  +D      + ++ L   K   E  
Sbjct: 72  FRPDVFLYTSVIHGYCKAGDLDTG--YFRAVTPKASLDVISYTTV-IKGLADSKRIDEAC 128

Query: 265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 324
            +   +    C P+V+    VI+G  K GRIE+ LK   +M +G  C P   T+T +I G
Sbjct: 129 ELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEM-SGSSCVPTRTTYTVVIDG 187

Query: 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 384
           L     + +A  +  Q M Q+G  P  +TY  ++ G  +  +++EA+++ + ML  G   
Sbjct: 188 LCKAQMLPDACKVFEQ-MVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEP 246

Query: 385 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFL 444
            + TY  ++ G C+ + ++EAK     +         +++ +++      G+  EA   L
Sbjct: 247 TAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVL 306

Query: 445 YELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNR 504
            E+   G  P+++ Y  +ID         EA  +   M + G  PDA+T+  + +     
Sbjct: 307 TEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKI 366

Query: 505 GN 506
           GN
Sbjct: 367 GN 368


>gi|115475728|ref|NP_001061460.1| Os08g0290000 [Oryza sativa Japonica Group]
 gi|38175588|dbj|BAD01297.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|38175668|dbj|BAD01373.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113623429|dbj|BAF23374.1| Os08g0290000 [Oryza sativa Japonica Group]
 gi|125602875|gb|EAZ42200.1| hypothetical protein OsJ_26764 [Oryza sativa Japonica Group]
          Length = 806

 Score =  201 bits (511), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 133/498 (26%), Positives = 235/498 (47%), Gaps = 42/498 (8%)

Query: 13  AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHC-GVLPNSLTYSVLV 71
           A   F  + SRG  P++ +    +    R G++D A +VFDEMR    V  N  +Y+ ++
Sbjct: 169 AADAFRVLSSRGAPPSIKTCNAFLEALVRAGQLDAAREVFDEMRESRNVALNEYSYTAMI 228

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP 131
           + + +   V+    ++ +LW        L      +  L+D+LC+ G V E FR+   M 
Sbjct: 229 KALCKAGKVDAGFEMLAELWR-----AGLQPTVVTYNVLMDALCKSGRVEEAFRLKGRME 283

Query: 132 QGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCM 191
           QG         G +I+ L R  R      V+  M + G++P+ V YN ++   C+ G C 
Sbjct: 284 QGGMTPSVVTFGILINGLARGERFGEVGIVLQEMEQLGVSPNEVIYNELIGWHCRKGHCS 343

Query: 192 RAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYL 251
           +A +L +E +     P+  TY ++ + LC E ++E+A ++L+ MLS   +  T  C ++ 
Sbjct: 344 QALRLFDEMVLKKMKPTAVTYNLIAKALCKEGEMERAERILEDMLS---IGMTVHCGLFN 400

Query: 252 RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC 311
                         V+ ++LQ                  +  R+E  + + N+MV  +  
Sbjct: 401 -------------TVVAWLLQ------------------RTRRLESVVSITNEMVT-RGM 428

Query: 312 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK 371
            P+    T  +  L   G+ QEA+ + ++ +  +G    + T NA++ GL   + ++EA 
Sbjct: 429 RPNDPLMTACMRELCKGGKHQEAVGIWFKTL-NKGLGVNLATSNALIHGLCEGKYMKEAT 487

Query: 372 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 431
           +V   ML  G+  DS TY I+I G C+ ++++EA +   D+       D + +  ++   
Sbjct: 488 KVIQTMLNKGIELDSITYNIMIRGCCKDSKMEEAIKLHGDMTRRGFKPDLFTFNTLLHAY 547

Query: 432 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 491
           C  GK+ E  H L ++   G+ P+IV Y  +IDG CK    R+A + L E+   GL P+ 
Sbjct: 548 CNLGKMEETFHLLDQMKTEGLQPDIVSYGTIIDGHCKAKDIRKAKEYLTELMDRGLKPNV 607

Query: 492 VTWRILDKLHGNRGNDFG 509
             +  L   +G  G+  G
Sbjct: 608 FIYNALIGGYGRNGDISG 625



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 143/548 (26%), Positives = 242/548 (44%), Gaps = 55/548 (10%)

Query: 4   LCGLSRVGE---AHKLFFDMK-SRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCG 59
           L  L R G+   A ++F +M+ SR    N  SYT +I   C+ G++D  +++  E+   G
Sbjct: 192 LEALVRAGQLDAAREVFDEMRESRNVALNEYSYTAMIKALCKAGKVDAGFEMLAELWRAG 251

Query: 60  VLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGY 119
           + P  +TY+VL+  + ++  VE A    F+L  RM E+  ++ +   F  L++ L R   
Sbjct: 252 LQPTVVTYNVLMDALCKSGRVEEA----FRLKGRM-EQGGMTPSVVTFGILINGLARGER 306

Query: 120 VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
             EV  + ++M Q      E     +I   CR G    A R+   M  + + P+ V+YN 
Sbjct: 307 FGEVGIVLQEMEQLGVSPNEVIYNELIGWHCRKGHCSQALRLFDEMVLKKMKPTAVTYNL 366

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYL--------------------------------- 206
           I   LCK G   RA ++LE+ +  G                                   
Sbjct: 367 IAKALCKEGEMERAERILEDMLSIGMTVHCGLFNTVVAWLLQRTRRLESVVSITNEMVTR 426

Query: 207 ---PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTEL 263
              P++      +  LC     ++A  +    L+K         N  +  LC  K   E 
Sbjct: 427 GMRPNDPLMTACMRELCKGGKHQEAVGIWFKTLNKGLGVNLATSNALIHGLCEGKYMKEA 486

Query: 264 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF 323
             V+  ML    + D IT N +I G CK  ++EEA+K+  DM    F  PD  TF T++ 
Sbjct: 487 TKVIQTMLNKGIELDSITYNIMIRGCCKDSKMEEAIKLHGDMTRRGF-KPDLFTFNTLLH 545

Query: 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 383
              N+G+++E  +LL Q M   G  P IV+Y  ++ G  + + + +AKE    ++  G+ 
Sbjct: 546 AYCNLGKMEETFHLLDQ-MKTEGLQPDIVSYGTIIDGHCKAKDIRKAKEYLTELMDRGLK 604

Query: 384 ADSTTYAIVIDGLCE----SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
            +   Y  +I G       S  +D  +    + + P+N+     Y +++  +C +G + E
Sbjct: 605 PNVFIYNALIGGYGRNGDISGAIDAVETMKSNGIQPTNV----TYGSLMYWMCHAGLVEE 660

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
           A     +  ++ V   ++ Y ++I G CKL    EA     EMR  G++P+ +T+  L  
Sbjct: 661 AKTIFSQARENNVDLGVIGYTIMIQGYCKLGKMVEAVAYFEEMRSRGISPNKLTYTTLMY 720

Query: 500 LHGNRGND 507
            +   GN 
Sbjct: 721 AYSKSGNS 728



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 141/508 (27%), Positives = 236/508 (46%), Gaps = 28/508 (5%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           MD LC   RV EA +L   M+  G  P+VV++  LI+G  R         V  EM   GV
Sbjct: 263 MDALCKSGRVEEAFRLKGRMEQGGMTPSVVTFGILINGLARGERFGEVGIVLQEMEQLGV 322

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN + Y+ L+    R     +A     +L++ M  ++ +      +  +  +LC+EG +
Sbjct: 323 SPNEVIYNELIGWHCRKGHCSQA----LRLFDEMVLKK-MKPTAVTYNLIAKALCKEGEM 377

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDS-----LCRSGRNHGASRVVYVMRKRGLTPSLV 175
               RI EDM    S+     CG + ++     L R+ R      +   M  RG+ P+  
Sbjct: 378 ERAERILEDM---LSIGMTVHCG-LFNTVVAWLLQRTRRLESVVSITNEMVTRGMRPNDP 433

Query: 176 SYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM 235
              + +  LCK G    A  +  + +  G   +  T   L+ GLC    +++A KV+Q M
Sbjct: 434 LMTACMRELCKGGKHQEAVGIWFKTLNKGLGVNLATSNALIHGLCEGKYMKEATKVIQTM 493

Query: 236 LSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 295
           L+K     +   NI +R  C      E + +   M +   +PD+ T NT+++ +C +G++
Sbjct: 494 LNKGIELDSITYNIMIRGCCKDSKMEEAIKLHGDMTRRGFKPDLFTFNTLLHAYCNLGKM 553

Query: 296 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN 355
           EE   +L+ M   +   PD V++ TII G      I++A   L ++M  RG  P +  YN
Sbjct: 554 EETFHLLDQMKT-EGLQPDIVSYGTIIDGHCKAKDIRKAKEYLTELM-DRGLKPNVFIYN 611

Query: 356 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP 415
           A++ G  R   +  A +    M   G+   + TY  ++  +C +  ++EAK  +      
Sbjct: 612 ALIGGYGRNGDISGAIDAVETMKSNGIQPTNVTYGSLMYWMCHAGLVEEAKTIF------ 665

Query: 416 SNIHDNYV------YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKL 469
           S   +N V      Y  MI+G C+ GK+ EAV +  E+   G++PN + Y  ++    K 
Sbjct: 666 SQARENNVDLGVIGYTIMIQGYCKLGKMVEAVAYFEEMRSRGISPNKLTYTTLMYAYSKS 725

Query: 470 SMKREAYQILREMRKNGLNPDAVTWRIL 497
               EA ++  EM  +G+ PD +T+  L
Sbjct: 726 GNSEEASKLFDEMVGSGVIPDNITYGTL 753



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 116/507 (22%), Positives = 223/507 (43%), Gaps = 51/507 (10%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           R GE   +  +M+  G  PN V Y  LI  +CR G    A ++FDEM    + P ++TY+
Sbjct: 306 RFGEVGIVLQEMEQLGVSPNEVIYNELIGWHCRKGHCSQALRLFDEMVLKKMKPTAVTYN 365

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDS-----LCREGYVNEV 123
           ++ + + +  ++ERA  ++         E+ LS+       L ++     L R   +  V
Sbjct: 366 LIAKALCKEGEMERAERIL---------EDMLSIGMTVHCGLFNTVVAWLLQRTRRLESV 416

Query: 124 FRIAEDM-PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
             I  +M  +G   N+      M + LC+ G++  A  + +    +GL  +L + N+++H
Sbjct: 417 VSITNEMVTRGMRPNDPLMTACMRE-LCKGGKHQEAVGIWFKTLNKGLGVNLATSNALIH 475

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           GLC+      A ++++  +  G      TY +++ G C +S +E+A K+   M  +    
Sbjct: 476 GLCEGKYMKEATKVIQTMLNKGIELDSITYNIMIRGCCKDSKMEEAIKLHGDMTRRGFKP 535

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
                N  L A C +    E  ++L  M     QPD+++  T+I+G CK   I +A + L
Sbjct: 536 DLFTFNTLLHAYCNLGKMEETFHLLDQMKTEGLQPDIVSYGTIIDGHCKAKDIRKAKEYL 595

Query: 303 NDM------------------------VAGKFCA----------PDAVTFTTIIFGLLNV 328
            ++                        ++G   A          P  VT+ ++++ + + 
Sbjct: 596 TELMDRGLKPNVFIYNALIGGYGRNGDISGAIDAVETMKSNGIQPTNVTYGSLMYWMCHA 655

Query: 329 GRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTT 388
           G ++EA  +  Q   +     G++ Y  +++G  +L ++ EA   F  M   G+  +  T
Sbjct: 656 GLVEEAKTIFSQAR-ENNVDLGVIGYTIMIQGYCKLGKMVEAVAYFEEMRSRGISPNKLT 714

Query: 389 YAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELV 448
           Y  ++    +S   +EA + +D++V    I DN  Y  +I        + + +    EL 
Sbjct: 715 YTTLMYAYSKSGNSEEASKLFDEMVGSGVIPDNITYGTLIARCSEVNSLDKDIGHTAELS 774

Query: 449 DSGVTPNIVCYNVVIDGACKLSMKREA 475
              +T +   YN++ +G      ++EA
Sbjct: 775 SGALTKDDRMYNILSNGINAPWCQKEA 801



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 46/67 (68%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C L ++ EA   F +M+SRG  PN ++YTTL++ Y ++G  + A K+FDEM   GV+P++
Sbjct: 688 CKLGKMVEAVAYFEEMRSRGISPNKLTYTTLMYAYSKSGNSEEASKLFDEMVGSGVIPDN 747

Query: 65  LTYSVLV 71
           +TY  L+
Sbjct: 748 ITYGTLI 754


>gi|255548994|ref|XP_002515553.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545497|gb|EEF47002.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 927

 Score =  201 bits (511), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 139/496 (28%), Positives = 232/496 (46%), Gaps = 14/496 (2%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C   ++  A + F  M   G  PN V+Y  LI   C+ G M  AY ++ +M++  + P  
Sbjct: 360 CKQDKLVSALEFFDKMNENGPSPNRVTYAVLIEWCCKNGNMAKAYDLYTQMKNKNICPTV 419

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNA---AFANLVDSLCREGYVN 121
              + L+RG L+    E A+ L          +E ++ + A    + +L+  LC+EG ++
Sbjct: 420 FIVNSLIRGFLKVESREEASKLF---------DEAVACDIANIFTYNSLLSWLCKEGKMS 470

Query: 122 EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
           E   + + M        + +   MI   CR G    A+ V   M   GL P++++Y+ ++
Sbjct: 471 EATTLWQKMLDKGLAPTKVSYNSMILGHCRQGNLDMAASVFSDMLDCGLKPNVITYSILM 530

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
            G  K+G    A+ + +  +    +PS+ TY + + GLC      +A+ +L+  + K  V
Sbjct: 531 DGYFKNGDTEYAFYVFDRMVDENIVPSDFTYNIKINGLCKVGRTSEAQDMLKKFVEKGFV 590

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
                 N  +       + +  L     M ++   P+VIT  T+INGFCK    + ALK+
Sbjct: 591 PVCLTYNSIMDGFIKEGSVSSALTAYREMCESGVSPNVITYTTLINGFCKNNNTDLALKM 650

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
            N+M   K    D   +  +I G      I+ A + L+  +   G SP  V YN+++ G 
Sbjct: 651 RNEM-RNKGLELDIAAYGALIDGFCKKQDIETA-SWLFSELLDGGLSPNSVIYNSLISGY 708

Query: 362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
             L  +E A  +   MLG G+  D  TY  +IDGL +  +L  A   + ++     I D 
Sbjct: 709 RNLNNMEAALNLQKRMLGEGISCDLQTYTTLIDGLLKEGRLVLALDLYSEMSAKGIIPDI 768

Query: 422 YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
            +Y  +I GLC  G++  A   L E+    +TPN+  YN +I G  K    +EA+++  E
Sbjct: 769 IIYTVLINGLCGKGQLENAQKILAEMERDSITPNVPIYNALIAGHFKAGNLQEAFRLHNE 828

Query: 482 MRKNGLNPDAVTWRIL 497
           M   GL P+  T+ IL
Sbjct: 829 MLDKGLTPNDTTYDIL 844



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 136/503 (27%), Positives = 236/503 (46%), Gaps = 24/503 (4%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           EA +L  +M S G   NVV  TTL+ GYC+  ++  A + FD+M   G  PN +TY+VL+
Sbjct: 332 EALRLKDEMVSCGVQMNVVVATTLVKGYCKQDKLVSALEFFDKMNENGPSPNRVTYAVLI 391

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP 131
               +  ++ +A    + L+ +MK +     N      +V+SL R G++    ++     
Sbjct: 392 EWCCKNGNMAKA----YDLYTQMKNK-----NICPTVFIVNSLIR-GFL----KVESREE 437

Query: 132 QGKSVNEEFAC--------GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             K  +E  AC          ++  LC+ G+   A+ +   M  +GL P+ VSYNS++ G
Sbjct: 438 ASKLFDEAVACDIANIFTYNSLLSWLCKEGKMSEATTLWQKMLDKGLAPTKVSYNSMILG 497

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            C+ G    A  +  + +  G  P+  TY +L++G     D E A  V   M+ +  V  
Sbjct: 498 HCRQGNLDMAASVFSDMLDCGLKPNVITYSILMDGYFKNGDTEYAFYVFDRMVDENIVPS 557

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               NI +  LC +   +E  ++L   ++    P  +T N++++GF K G +  AL    
Sbjct: 558 DFTYNIKINGLCKVGRTSEAQDMLKKFVEKGFVPVCLTYNSIMDGFIKEGSVSSALTAYR 617

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           +M      +P+ +T+TT+I G         AL +  + M  +G    I  Y A++ G  +
Sbjct: 618 EMCESG-VSPNVITYTTLINGFCKNNNTDLALKMRNE-MRNKGLELDIAAYGALIDGFCK 675

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
            + +E A  +F+ +L  G+  +S  Y  +I G    N ++ A      ++      D   
Sbjct: 676 KQDIETASWLFSELLDGGLSPNSVIYNSLISGYRNLNNMEAALNLQKRMLGEGISCDLQT 735

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y  +I GL + G++  A+    E+   G+ P+I+ Y V+I+G C       A +IL EM 
Sbjct: 736 YTTLIDGLLKEGRLVLALDLYSEMSAKGIIPDIIIYTVLINGLCGKGQLENAQKILAEME 795

Query: 484 KNGLNPDAVTWRILDKLHGNRGN 506
           ++ + P+   +  L   H   GN
Sbjct: 796 RDSITPNVPIYNALIAGHFKAGN 818



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 116/400 (29%), Positives = 203/400 (50%), Gaps = 17/400 (4%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +  LC   ++ EA  L+  M  +G  P  VSY ++I G+CR G +D+A  VF +M  CG+
Sbjct: 460 LSWLCKEGKMSEATTLWQKMLDKGLAPTKVSYNSMILGHCRQGNLDMAASVFSDMLDCGL 519

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +TYS+L+ G  +  D E A    F +++RM  +E++  ++  +   ++ LC+ G  
Sbjct: 520 KPNVITYSILMDGYFKNGDTEYA----FYVFDRMV-DENIVPSDFTYNIKINGLCKVGRT 574

Query: 121 NEVFRIAEDMPQGKSVNEEF-----ACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLV 175
           +E    A+DM + K V + F         ++D   + G    A      M + G++P+++
Sbjct: 575 SE----AQDMLK-KFVEKGFVPVCLTYNSIMDGFIKEGSVSSALTAYREMCESGVSPNVI 629

Query: 176 SYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM 235
           +Y ++++G CK+     A ++  E    G       Y  L++G C + D+E A  +   +
Sbjct: 630 TYTTLINGFCKNNNTDLALKMRNEMRNKGLELDIAAYGALIDGFCKKQDIETASWLFSEL 689

Query: 236 LSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 295
           L       + I N  +     + N    LN+   ML      D+ T  T+I+G  K GR+
Sbjct: 690 LDGGLSPNSVIYNSLISGYRNLNNMEAALNLQKRMLGEGISCDLQTYTTLIDGLLKEGRL 749

Query: 296 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN 355
             AL + ++M A K   PD + +T +I GL   G+++ A  +L + M +   +P +  YN
Sbjct: 750 VLALDLYSEMSA-KGIIPDIIIYTVLINGLCGKGQLENAQKILAE-MERDSITPNVPIYN 807

Query: 356 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG 395
           A++ G F+   ++EA  + N ML  G+  + TTY I+I+G
Sbjct: 808 ALIAGHFKAGNLQEAFRLHNEMLDKGLTPNDTTYDILING 847



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 126/521 (24%), Positives = 224/521 (42%), Gaps = 43/521 (8%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           EA +++  M  +G   +  +   ++    +    + A K F E +  GV  ++  YS+++
Sbjct: 227 EAREVYEKMVLKGVHGDCFTVHIMMRANLKDNNEEEAKKFFLEAKSRGVKLDAAAYSIVI 286

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP 131
           +   +  DVE A  L+  +      ++    +   F +++ +  ++G + E  R+ ++M 
Sbjct: 287 QAFCKNLDVELACGLLKDM-----RDKGWVPSEGTFTSVIGACVKQGNMVEALRLKDEMV 341

Query: 132 Q-GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGC 190
             G  +N   A   ++   C+  +   A      M + G +P+ V+Y  ++   CK+G  
Sbjct: 342 SCGVQMNVVVAT-TLVKGYCKQDKLVSALEFFDKMNENGPSPNRVTYAVLIEWCCKNGNM 400

Query: 191 MRAYQLLEE--------------GIQFGYLPSEH--------------------TYKVLV 216
            +AY L  +               +  G+L  E                     TY  L+
Sbjct: 401 AKAYDLYTQMKNKNICPTVFIVNSLIRGFLKVESREEASKLFDEAVACDIANIFTYNSLL 460

Query: 217 EGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQ 276
             LC E  + +A  + Q ML K         N  +   C   N     +V   ML    +
Sbjct: 461 SWLCKEGKMSEATTLWQKMLDKGLAPTKVSYNSMILGHCRQGNLDMAASVFSDMLDCGLK 520

Query: 277 PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALN 336
           P+VIT + +++G+ K G  E A  V + MV      P   T+   I GL  VGR  EA +
Sbjct: 521 PNVITYSILMDGYFKNGDTEYAFYVFDRMVDENI-VPSDFTYNIKINGLCKVGRTSEAQD 579

Query: 337 LLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 396
           +L + + ++G+ P  +TYN+++ G  +   V  A   +  M   GV  +  TY  +I+G 
Sbjct: 580 MLKKFV-EKGFVPVCLTYNSIMDGFIKEGSVSSALTAYREMCESGVSPNVITYTTLINGF 638

Query: 397 CESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNI 456
           C++N  D A +  +++       D   Y A+I G C+   I  A     EL+D G++PN 
Sbjct: 639 CKNNNTDLALKMRNEMRNKGLELDIAAYGALIDGFCKKQDIETASWLFSELLDGGLSPNS 698

Query: 457 VCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           V YN +I G   L+    A  + + M   G++ D  T+  L
Sbjct: 699 VIYNSLISGYRNLNNMEAALNLQKRMLGEGISCDLQTYTTL 739



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 114/473 (24%), Positives = 214/473 (45%), Gaps = 10/473 (2%)

Query: 26  VPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANV 85
           VP +     L+    +   +  A +V+++M   GV  +  T  +++R  L+  + E A  
Sbjct: 206 VPWIKFLNFLLTALVKNDMIYEAREVYEKMVLKGVHGDCFTVHIMMRANLKDNNEEEAKK 265

Query: 86  LMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHM 145
              +   R      + ++ AA++ ++ + C+   V     + +DM     V  E     +
Sbjct: 266 FFLEAKSR-----GVKLDAAAYSIVIQAFCKNLDVELACGLLKDMRDKGWVPSEGTFTSV 320

Query: 146 IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY 205
           I +  + G    A R+   M   G+  ++V   ++V G CK    + A +  ++  + G 
Sbjct: 321 IGACVKQGNMVEALRLKDEMVSCGVQMNVVVATTLVKGYCKQDKLVSALEFFDKMNENGP 380

Query: 206 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 265
            P+  TY VL+E  C   ++ KA  +   M +K       I N  +R    +++  E   
Sbjct: 381 SPNRVTYAVLIEWCCKNGNMAKAYDLYTQMKNKNICPTVFIVNSLIRGFLKVESREEASK 440

Query: 266 VLVFMLQTQCQ-PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 324
             +F     C   ++ T N++++  CK G++ EA  +   M+  K  AP  V++ ++I G
Sbjct: 441 --LFDEAVACDIANIFTYNSLLSWLCKEGKMSEATTLWQKML-DKGLAPTKVSYNSMILG 497

Query: 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 384
               G +  A + ++  M   G  P ++TY+ ++ G F+    E A  VF+ M+   +V 
Sbjct: 498 HCRQGNLDMAAS-VFSDMLDCGLKPNVITYSILMDGYFKNGDTEYAFYVFDRMVDENIVP 556

Query: 385 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFL 444
              TY I I+GLC+  +  EA+      V    +     Y +++ G  + G +  A+   
Sbjct: 557 SDFTYNIKINGLCKVGRTSEAQDMLKKFVEKGFVPVCLTYNSIMDGFIKEGSVSSALTAY 616

Query: 445 YELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            E+ +SGV+PN++ Y  +I+G CK +    A ++  EMR  GL  D   +  L
Sbjct: 617 REMCESGVSPNVITYTTLINGFCKNNNTDLALKMRNEMRNKGLELDIAAYGAL 669



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/229 (24%), Positives = 101/229 (44%), Gaps = 2/229 (0%)

Query: 278 DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNL 337
           D+   N ++N + K  ++ +A+   N +V      P       ++  L+    I EA  +
Sbjct: 173 DIRIYNYLLNSYIKANKLNDAIGCFNRLVESDI-VPWIKFLNFLLTALVKNDMIYEAREV 231

Query: 338 LYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLC 397
            Y+ M  +G      T + ++R   +    EEAK+ F      GV  D+  Y+IVI   C
Sbjct: 232 -YEKMVLKGVHGDCFTVHIMMRANLKDNNEEEAKKFFLEAKSRGVKLDAAAYSIVIQAFC 290

Query: 398 ESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIV 457
           ++  ++ A     D+     +     + ++I    + G + EA+    E+V  GV  N+V
Sbjct: 291 KNLDVELACGLLKDMRDKGWVPSEGTFTSVIGACVKQGNMVEALRLKDEMVSCGVQMNVV 350

Query: 458 CYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
               ++ G CK      A +   +M +NG +P+ VT+ +L +     GN
Sbjct: 351 VATTLVKGYCKQDKLVSALEFFDKMNENGPSPNRVTYAVLIEWCCKNGN 399



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 53/253 (20%), Positives = 98/253 (38%), Gaps = 65/253 (25%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           MD       V  A   + +M   G  PNV++YTTLI+G+C+    D+A K+ +EMR+ G+
Sbjct: 600 MDGFIKEGSVSSALTAYREMCESGVSPNVITYTTLINGFCKNNNTDLALKMRNEMRNKGL 659

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLW----------------------------- 91
             +   Y  L+ G  + +D+E A+ L  +L                              
Sbjct: 660 ELDIAAYGALIDGFCKKQDIETASWLFSELLDGGLSPNSVIYNSLISGYRNLNNMEAALN 719

Query: 92  -ERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC 150
            ++    E +S +   +  L+D L +EG +     +  +M     + +      +I+ LC
Sbjct: 720 LQKRMLGEGISCDLQTYTTLIDGLLKEGRLVLALDLYSEMSAKGIIPDIIIYTVLINGLC 779

Query: 151 RSGRNHGASRVVYVMRK-----------------------------------RGLTPSLV 175
             G+   A +++  M +                                   +GLTP+  
Sbjct: 780 GKGQLENAQKILAEMERDSITPNVPIYNALIAGHFKAGNLQEAFRLHNEMLDKGLTPNDT 839

Query: 176 SYNSIVHGLCKHG 188
           +Y+ +++G  K G
Sbjct: 840 TYDILINGKIKGG 852



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 78/378 (20%), Positives = 144/378 (38%), Gaps = 48/378 (12%)

Query: 106 AFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGR--NHGASRVVY 163
            F   +DSLC   ++  + R +E + Q +++   F  G        SG   N      + 
Sbjct: 113 GFVRSLDSLCVLLHI--LTRSSETLKQAQNLLNRFISGD-------SGPMPNILVDHFIG 163

Query: 164 VMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGES 223
             ++      +  YN +++   K      A       ++   +P       L+  L    
Sbjct: 164 STKRFDFDSDIRIYNYLLNSYIKANKLNDAIGCFNRLVESDIVPWIKFLNFLLTALVKND 223

Query: 224 DLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLN 283
            + +AR+V + M+ K         +I +RA     N  E     +       + D    +
Sbjct: 224 MIYEAREVYEKMVLKGVHGDCFTVHIMMRANLKDNNEEEAKKFFLEAKSRGVKLDAAAYS 283

Query: 284 TVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMP 343
            VI  FCK   +E A  +L DM   K   P   TFT++I   +  G + EAL        
Sbjct: 284 IVIQAFCKNLDVELACGLLKDM-RDKGWVPSEGTFTSVIGACVKQGNMVEAL-------- 334

Query: 344 QRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLD 403
                              RL+      E+ +C + + VV  +T    ++ G C+ ++L 
Sbjct: 335 -------------------RLK-----DEMVSCGVQMNVVVATT----LVKGYCKQDKLV 366

Query: 404 EAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463
            A  F+D +       +   YA +I+  C++G + +A     ++ +  + P +   N +I
Sbjct: 367 SALEFFDKMNENGPSPNRVTYAVLIEWCCKNGNMAKAYDLYTQMKNKNICPTVFIVNSLI 426

Query: 464 DGACKLSMKREAYQILRE 481
            G  K+  + EA ++  E
Sbjct: 427 RGFLKVESREEASKLFDE 444



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 48/90 (53%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LCG  ++  A K+  +M+     PNV  Y  LI G+ + G +  A+++ +EM   G+
Sbjct: 775 INGLCGKGQLENAQKILAEMERDSITPNVPIYNALIAGHFKAGNLQEAFRLHNEMLDKGL 834

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKL 90
            PN  TY +L+ G ++  +    ++L  K 
Sbjct: 835 TPNDTTYDILINGKIKGGNSALKSLLSLKF 864



 Score = 43.1 bits (100), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 32/148 (21%), Positives = 62/148 (41%)

Query: 347 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
           +   I  YN +L    +  ++ +A   FN ++   +V        ++  L +++ + EA+
Sbjct: 170 FDSDIRIYNYLLNSYIKANKLNDAIGCFNRLVESDIVPWIKFLNFLLTALVKNDMIYEAR 229

Query: 407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466
             ++ +V      D +    M++   +     EA  F  E    GV  +   Y++VI   
Sbjct: 230 EVYEKMVLKGVHGDCFTVHIMMRANLKDNNEEEAKKFFLEAKSRGVKLDAAAYSIVIQAF 289

Query: 467 CKLSMKREAYQILREMRKNGLNPDAVTW 494
           CK      A  +L++MR  G  P   T+
Sbjct: 290 CKNLDVELACGLLKDMRDKGWVPSEGTF 317


>gi|224130702|ref|XP_002328355.1| predicted protein [Populus trichocarpa]
 gi|222838070|gb|EEE76435.1| predicted protein [Populus trichocarpa]
          Length = 608

 Score =  201 bits (511), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 115/393 (29%), Positives = 204/393 (51%), Gaps = 2/393 (0%)

Query: 105 AAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYV 164
           A F   + S  ++   + V  +   M      +  ++   +I+ LCR      A  ++  
Sbjct: 89  AEFGKFLGSFAKKKQYSTVVSLCNQMDLFGVTHNVYSLNVLINCLCRLNHVDFAVSILGK 148

Query: 165 MRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESD 224
           M K G+ P+  ++N++++GLC  G    A +L  E ++ G+ P+  +Y  ++ GLC   +
Sbjct: 149 MFKLGIHPTASTFNALINGLCNEGKIKEAVELFNEMVRRGHEPNVISYNTIINGLCKTGN 208

Query: 225 LEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNT 284
              A  V + M            N  + +LC  +   + +  L  ML     P+V T N 
Sbjct: 209 TSMAVDVFKKMEQNGCKPDVVTYNTIIDSLCKDRLVNDAMEFLSEMLDRGIPPNVFTYNC 268

Query: 285 VINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ 344
           +++GFC +G++ EA ++  +MV G+   PD VT T ++ GL   G + EA  L+++ M +
Sbjct: 269 MVHGFCILGQLNEATRLFKEMV-GRDVMPDTVTLTILVDGLCKEGMVSEA-RLVFETMTE 326

Query: 345 RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 404
           +G  P I TYNA++ G    R + EAK+VF  M+  G      +Y I+I+G C+S ++DE
Sbjct: 327 KGVEPNISTYNALMDGYCLQRLMNEAKKVFEIMIRQGCAPGVHSYNILINGFCKSRRMDE 386

Query: 405 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
           AK    ++   +   D   Y+ +++GLC+ G+  EA++   E+   G+ PN+V Y++++D
Sbjct: 387 AKSLLAEMYHKALNPDTVTYSTLMQGLCQFGRPKEALNIFKEMCSYGLLPNLVTYSILLD 446

Query: 465 GACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           G CK     EA ++L+ M++  L P+ V   IL
Sbjct: 447 GFCKHGHLDEALKLLKSMQEKKLEPNIVHHTIL 479



 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 135/474 (28%), Positives = 226/474 (47%), Gaps = 7/474 (1%)

Query: 24  GHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERA 83
           G   NV S   LI+  CR   +D A  +  +M   G+ P + T++ L+ G+     ++ A
Sbjct: 118 GVTHNVYSLNVLINCLCRLNHVDFAVSILGKMFKLGIHPTASTFNALINGLCNEGKIKEA 177

Query: 84  NVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACG 143
             L  ++  R  E   +S N      +++ LC+ G  +    + + M Q     +     
Sbjct: 178 VELFNEMVRRGHEPNVISYNT-----IINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYN 232

Query: 144 HMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQF 203
            +IDSLC+    + A   +  M  RG+ P++ +YN +VHG C  G    A +L +E +  
Sbjct: 233 TIIDSLCKDRLVNDAMEFLSEMLDRGIPPNVFTYNCMVHGFCILGQLNEATRLFKEMVGR 292

Query: 204 GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTEL 263
             +P   T  +LV+GLC E  + +AR V + M  K         N  +   CL +   E 
Sbjct: 293 DVMPDTVTLTILVDGLCKEGMVSEARLVFETMTEKGVEPNISTYNALMDGYCLQRLMNEA 352

Query: 264 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF 323
             V   M++  C P V + N +INGFCK  R++EA  +L +M   K   PD VT++T++ 
Sbjct: 353 KKVFEIMIRQGCAPGVHSYNILINGFCKSRRMDEAKSLLAEMYH-KALNPDTVTYSTLMQ 411

Query: 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 383
           GL   GR +EALN +++ M   G  P +VTY+ +L G  +   ++EA ++   M    + 
Sbjct: 412 GLCQFGRPKEALN-IFKEMCSYGLLPNLVTYSILLDGFCKHGHLDEALKLLKSMQEKKLE 470

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
            +   + I+I+G+  + +L+ AK  +  +           Y  MIKGL + G   EA   
Sbjct: 471 PNIVHHTILIEGMFIAGKLEVAKELFSKLFADGIRPTIRTYTVMIKGLLKEGLSDEAYDL 530

Query: 444 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
             ++ D G  PN   YNV+I G  +      A +++ EM     + +  T+++L
Sbjct: 531 FRKMEDDGFLPNSCSYNVMIQGFLQNQDSSTAIRLIDEMVGKRFSANLSTFQML 584



 Score =  198 bits (503), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 118/413 (28%), Positives = 211/413 (51%), Gaps = 7/413 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   ++ EA +LF +M  RGH PNV+SY T+I+G C+TG   +A  VF +M   G 
Sbjct: 165 INGLCNEGKIKEAVELFNEMVRRGHEPNVISYNTIINGLCKTGNTSMAVDVFKKMEQNGC 224

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TY+ ++  + + R V  A   + ++ +R      +  N   +  +V   C  G +
Sbjct: 225 KPDVVTYNTIIDSLCKDRLVNDAMEFLSEMLDR-----GIPPNVFTYNCMVHGFCILGQL 279

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           NE  R+ ++M     + +      ++D LC+ G    A  V   M ++G+ P++ +YN++
Sbjct: 280 NEATRLFKEMVGRDVMPDTVTLTILVDGLCKEGMVSEARLVFETMTEKGVEPNISTYNAL 339

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G C       A ++ E  I+ G  P  H+Y +L+ G C    +++A+ +L  M  K  
Sbjct: 340 MDGYCLQRLMNEAKKVFEIMIRQGCAPGVHSYNILINGFCKSRRMDEAKSLLAEMYHKAL 399

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
              T   +  ++ LC    P E LN+   M      P+++T + +++GFCK G ++EALK
Sbjct: 400 NPDTVTYSTLMQGLCQFGRPKEALNIFKEMCSYGLLPNLVTYSILLDGFCKHGHLDEALK 459

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +L  M   K   P+ V  T +I G+   G+++ A  L  ++    G  P I TY  +++G
Sbjct: 460 LLKSMQEKKL-EPNIVHHTILIEGMFIAGKLEVAKELFSKLFAD-GIRPTIRTYTVMIKG 517

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413
           L +    +EA ++F  M   G + +S +Y ++I G  ++     A R  D++V
Sbjct: 518 LLKEGLSDEAYDLFRKMEDDGFLPNSCSYNVMIQGFLQNQDSSTAIRLIDEMV 570



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 102/399 (25%), Positives = 194/399 (48%), Gaps = 20/399 (5%)

Query: 110 LVDSLCREGYVNEVFRIAEDM------PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVY 163
           L++ LCR  +V+    I   M      P   + N       +I+ LC  G+   A  +  
Sbjct: 129 LINCLCRLNHVDFAVSILGKMFKLGIHPTASTFNA------LINGLCNEGKIKEAVELFN 182

Query: 164 VMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGES 223
            M +RG  P+++SYN+I++GLCK G    A  + ++  Q G  P   TY  +++ LC + 
Sbjct: 183 EMVRRGHEPNVISYNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTIIDSLCKDR 242

Query: 224 DLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLN 283
            +  A + L  ML +         N  +   C++    E   +   M+     PD +TL 
Sbjct: 243 LVNDAMEFLSEMLDRGIPPNVFTYNCMVHGFCILGQLNEATRLFKEMVGRDVMPDTVTLT 302

Query: 284 TVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMP 343
            +++G CK G + EA  V   M   K   P+  T+  ++ G   + R+      ++++M 
Sbjct: 303 ILVDGLCKEGMVSEARLVFETMTE-KGVEPNISTYNALMDGYC-LQRLMNEAKKVFEIMI 360

Query: 344 QRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLD 403
           ++G +PG+ +YN ++ G  + RR++EAK +   M    +  D+ TY+ ++ GLC+  +  
Sbjct: 361 RQGCAPGVHSYNILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQFGRPK 420

Query: 404 EAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463
           EA   + ++     + +   Y+ ++ G C+ G + EA+  L  + +  + PNIV + ++I
Sbjct: 421 EALNIFKEMCSYGLLPNLVTYSILLDGFCKHGHLDEALKLLKSMQEKKLEPNIVHHTILI 480

Query: 464 DG---ACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
           +G   A KL + +E +    ++  +G+ P   T+ ++ K
Sbjct: 481 EGMFIAGKLEVAKELFS---KLFADGIRPTIRTYTVMIK 516



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 102/394 (25%), Positives = 189/394 (47%), Gaps = 42/394 (10%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    V +A +   +M  RG  PNV +Y  ++HG+C  G+++ A ++F EM    V
Sbjct: 235 IDSLCKDRLVNDAMEFLSEMLDRGIPPNVFTYNCMVHGFCILGQLNEATRLFKEMVGRDV 294

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P+++T ++LV G+ +   V  A  L+F+       E ++S  NA    L+D  C +  +
Sbjct: 295 MPDTVTLTILVDGLCKEGMVSEAR-LVFETMTEKGVEPNISTYNA----LMDGYCLQRLM 349

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           NE  ++ E M +        +   +I+  C+S R   A  ++  M  + L P  V+Y+++
Sbjct: 350 NEAKKVFEIMIRQGCAPGVHSYNILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYSTL 409

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GLC+ G    A  + +E   +G LP+  TY +L++G C    L++A K+L+ M  KK 
Sbjct: 410 MQGLCQFGRPKEALNIFKEMCSYGLLPNLVTYSILLDGFCKHGHLDEALKLLKSMQEKK- 468

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                              +P+++    +I G    G++E A +
Sbjct: 469 ----------------------------------LEPNIVHHTILIEGMFIAGKLEVAKE 494

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           + + + A     P   T+T +I GLL  G   EA + L++ M   G+ P   +YN +++G
Sbjct: 495 LFSKLFADGI-RPTIRTYTVMIKGLLKEGLSDEAYD-LFRKMEDDGFLPNSCSYNVMIQG 552

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVID 394
             + +    A  + + M+G    A+ +T+ +++D
Sbjct: 553 FLQNQDSSTAIRLIDEMVGKRFSANLSTFQMLLD 586


>gi|449448914|ref|XP_004142210.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
 gi|449525343|ref|XP_004169677.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
          Length = 768

 Score =  201 bits (511), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 129/486 (26%), Positives = 240/486 (49%), Gaps = 15/486 (3%)

Query: 28  NVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLM 87
           +V ++  LI   C+  ++  A  + +EM   G+ P+  T++ +++G +   +++ A    
Sbjct: 202 DVSTFNILIKALCKAHQVRPAILMMEEMPSYGLSPDETTFTTIMQGYIEGGNLDGA---- 257

Query: 88  FKLWERMKEE----EDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACG 143
            ++ E+M E      D++VN      L++  C++G +++     ++        ++F   
Sbjct: 258 LRIKEQMVEYGCPCTDVTVNV-----LINGFCKQGRIDQALSFIQEAVSEGFRPDQFTYN 312

Query: 144 HMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQF 203
            +++ LC+ G    A  VV  M   GL P + +YNS++ GLCK G    A ++L++ +  
Sbjct: 313 TLVNGLCKIGHAKHAMEVVDAMLLGGLDPDIYTYNSLISGLCKLGEIEEAVKILDQMVSR 372

Query: 204 GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTEL 263
              P+  TY  ++  LC E+ +++A ++ + + SK  +      N  ++ LCL  N    
Sbjct: 373 DCSPNAVTYNAIISSLCKENRVDEATEIARLLTSKGILPDVCTFNSLIQGLCLSSNHKSA 432

Query: 264 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF 323
           +++   M    C+PD  T N +I+  C   ++EEAL +L +M     CA + V + T+I 
Sbjct: 433 MDLFEEMKGKGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNG-CARNVVIYNTLID 491

Query: 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 383
           G     RI+EA   ++  M  +G S   VTYN ++ GL + +RVE+A ++ + M+  G+ 
Sbjct: 492 GFCKNKRIEEA-EEIFDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGLR 550

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
            D  TY  ++   C++  + +A      +       D   YA +I GLC++G++  A   
Sbjct: 551 PDKFTYNSLLTHFCKTGDIKKAADIVQTMTSSGCNPDIVTYATLISGLCKAGRVQVASRL 610

Query: 444 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGN 503
           L  +   G+      YN VI    K +   EA ++ REM      PDA+T++I+ +   N
Sbjct: 611 LRSIQMKGMVLTPHAYNPVIQALFKRNRTHEAMRLFREMLDKSEPPDAITYKIVYRGLCN 670

Query: 504 RGNDFG 509
            G   G
Sbjct: 671 GGGPIG 676



 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 137/504 (27%), Positives = 234/504 (46%), Gaps = 43/504 (8%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   +V  A  +  +M S G  P+  ++TT++ GY   G +D A ++ ++M   G    
Sbjct: 213 LCKAHQVRPAILMMEEMPSYGLSPDETTFTTIMQGYIEGGNLDGALRIKEQMVEYGCPCT 272

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +T +VL+ G  +   +++A  L F + E + E      +   +  LV+ LC+ G+    
Sbjct: 273 DVTVNVLINGFCKQGRIDQA--LSF-IQEAVSE--GFRPDQFTYNTLVNGLCKIGHAKHA 327

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             + + M  G    + +    +I  LC+ G    A +++  M  R  +P+ V+YN+I+  
Sbjct: 328 MEVVDAMLLGGLDPDIYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIISS 387

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LCK      A ++       G LP   T+  L++GLC  S+ + A  + + M  K     
Sbjct: 388 LCKENRVDEATEIARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCRPD 447

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               N+ + +LC  +   E LN+L  M    C  +V+  NT+I+GFCK  RIEEA ++ +
Sbjct: 448 EFTYNMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYNTLIDGFCKNKRIEEAEEIFD 507

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           +M   +  + D+VT+ T+I GL    R+++A  L+ Q M   G  P   TYN++L    +
Sbjct: 508 EMEL-QGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQ-MIMEGLRPDKFTYNSLLTHFCK 565

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCES------------------------ 399
              +++A ++   M   G   D  TYA +I GLC++                        
Sbjct: 566 TGDIKKAADIVQTMTSSGCNPDIVTYATLISGLCKAGRVQVASRLLRSIQMKGMVLTPHA 625

Query: 400 -----------NQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG-KIHEAVHFLYEL 447
                      N+  EA R + +++  S   D   Y  + +GLC  G  I EAV F  E+
Sbjct: 626 YNPVIQALFKRNRTHEAMRLFREMLDKSEPPDAITYKIVYRGLCNGGGPIGEAVDFTVEM 685

Query: 448 VDSGVTPNIVCYNVVIDGACKLSM 471
           ++ G  P    + ++ +G C LSM
Sbjct: 686 IERGNIPEFSSFVMLAEGLCTLSM 709



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 127/478 (26%), Positives = 226/478 (47%), Gaps = 15/478 (3%)

Query: 25  HVPNVVSYTTLIHGYCRTGEMDVAYKVFD-EMRHCGVLPNSLTYSVLVRGVLRTRDVERA 83
           H+P   +   LI    R  +   A +VF+   +    +P+S  Y  ++R + +       
Sbjct: 57  HLPPDFTPKQLIETLRRQTDEVAALRVFNWASKQPNFVPSSSVYEEILRKLGKAGS---- 112

Query: 84  NVLMFKLWERMKEEEDLS---VNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEF 140
               F+   R+ EE  LS    +   F   V+S  +    +EV  I + M     +  + 
Sbjct: 113 ----FEYMRRVLEEMKLSGCEFDRGIFLIFVESYGKFELYDEVVGIVKVMEDEYRIKPDT 168

Query: 141 ACGH-MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
              + +++ L  + +          M +R +   + ++N ++  LCK      A  ++EE
Sbjct: 169 RFYNVLLNVLVDANKLKLVESAHSSMVRRRIRHDVSTFNILIKALCKAHQVRPAILMMEE 228

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
              +G  P E T+  +++G     +L+ A ++ + M+           N+ +   C    
Sbjct: 229 MPSYGLSPDETTFTTIMQGYIEGGNLDGALRIKEQMVEYGCPCTDVTVNVLINGFCKQGR 288

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
             + L+ +   +    +PD  T NT++NG CK+G  + A++V++ M+ G    PD  T+ 
Sbjct: 289 IDQALSFIQEAVSEGFRPDQFTYNTLVNGLCKIGHAKHAMEVVDAMLLGGL-DPDIYTYN 347

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
           ++I GL  +G I+EA+ +L Q M  R  SP  VTYNA++  L +  RV+EA E+   +  
Sbjct: 348 SLISGLCKLGEIEEAVKILDQ-MVSRDCSPNAVTYNAIISSLCKENRVDEATEIARLLTS 406

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
            G++ D  T+  +I GLC S+    A   ++++       D + Y  +I  LC S K+ E
Sbjct: 407 KGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDSLCSSRKLEE 466

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           A++ L E+  +G   N+V YN +IDG CK     EA +I  EM   G++ D+VT+  L
Sbjct: 467 ALNLLKEMELNGCARNVVIYNTLIDGFCKNKRIEEAEEIFDEMELQGVSRDSVTYNTL 524



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 109/448 (24%), Positives = 207/448 (46%), Gaps = 12/448 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC +     A ++   M   G  P++ +Y +LI G C+ GE++ A K+ D+M      PN
Sbjct: 318 LCKIGHAKHAMEVVDAMLLGGLDPDIYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPN 377

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           ++TY+ ++  + +   V+ A  +      R+   + +  +   F +L+  LC        
Sbjct: 378 AVTYNAIISSLCKENRVDEATEIA-----RLLTSKGILPDVCTFNSLIQGLCLSSNHKSA 432

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             + E+M       +EF    +IDSLC S +   A  ++  M   G   ++V YN+++ G
Sbjct: 433 MDLFEEMKGKGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYNTLIDG 492

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK+     A ++ +E    G      TY  L++GLC    +E A +++  M+ +     
Sbjct: 493 FCKNKRIEEAEEIFDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGLRPD 552

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               N  L   C   +  +  +++  M  + C PD++T  T+I+G CK GR++ A ++L 
Sbjct: 553 KFTYNSLLTHFCKTGDIKKAADIVQTMTSSGCNPDIVTYATLISGLCKAGRVQVASRLLR 612

Query: 304 DM-VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
            + + G    P A  +  +I  L    R  EA+  L++ M  +   P  +TY  V RGL 
Sbjct: 613 SIQMKGMVLTPHA--YNPVIQALFKRNRTHEAMR-LFREMLDKSEPPDAITYKIVYRGLC 669

Query: 363 R-LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
                + EA +    M+  G + + +++ ++ +GLC  +  D   +  D I+  +   + 
Sbjct: 670 NGGGPIGEAVDFTVEMIERGNIPEFSSFVMLAEGLCTLSMDDTLVKLVDMIMEKAKFSER 729

Query: 422 YVYAAMIKGLCRSGKIHEAVHFLYELVD 449
            +  + I+G  +  K  +A+  L  ++D
Sbjct: 730 EI--STIRGFLKIRKFQDALSTLGGILD 755



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 94/371 (25%), Positives = 172/371 (46%), Gaps = 10/371 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +  LC  +RV EA ++   + S+G +P+V ++ +LI G C +     A  +F+EM+  G 
Sbjct: 385 ISSLCKENRVDEATEIARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGC 444

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+  TY++L+  +  +R +E A  L+ ++     E    + N   +  L+D  C+   +
Sbjct: 445 RPDEFTYNMLIDSLCSSRKLEEALNLLKEM-----ELNGCARNVVIYNTLIDGFCKNKRI 499

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E   I ++M       +      +ID LC+S R   A++++  M   GL P   +YNS+
Sbjct: 500 EEAEEIFDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSL 559

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +   CK G   +A  +++     G  P   TY  L+ GLC    ++ A ++L+ +  K  
Sbjct: 560 LTHFCKTGDIKKAADIVQTMTSSGCNPDIVTYATLISGLCKAGRVQVASRLLRSIQMKGM 619

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK-MGRIEEAL 299
           V      N  ++AL       E + +   ML     PD IT   V  G C   G I EA+
Sbjct: 620 VLTPHAYNPVIQALFKRNRTHEAMRLFREMLDKSEPPDAITYKIVYRGLCNGGGPIGEAV 679

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
               +M+  +   P+  +F  +  GL  +      + L+  +M +  +S   ++    +R
Sbjct: 680 DFTVEMIE-RGNIPEFSSFVMLAEGLCTLSMDDTLVKLVDMIMEKAKFSEREIS---TIR 735

Query: 360 GLFRLRRVEEA 370
           G  ++R+ ++A
Sbjct: 736 GFLKIRKFQDA 746



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 91/354 (25%), Positives = 157/354 (44%), Gaps = 52/354 (14%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   ++ EA  L  +M+  G   NVV Y TLI G+C+   ++ A ++FDEM   GV
Sbjct: 455 IDSLCSSRKLEEALNLLKEMELNGCARNVVIYNTLIDGFCKNKRIEEAEEIFDEMELQGV 514

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             +S+TY+ L+ G+ +++ VE A                        A L+D +  EG  
Sbjct: 515 SRDSVTYNTLIDGLCKSKRVEDA------------------------AQLMDQMIMEGL- 549

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                            ++F    ++   C++G    A+ +V  M   G  P +V+Y ++
Sbjct: 550 ---------------RPDKFTYNSLLTHFCKTGDIKKAADIVQTMTSSGCNPDIVTYATL 594

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GLCK G    A +LL      G + + H Y  +++ L   +   +A ++ + ML K +
Sbjct: 595 ISGLCKAGRVQVASRLLRSIQMKGMVLTPHAYNPVIQALFKRNRTHEAMRLFREMLDKSE 654

Query: 241 VDRTRICNIYLRALCLIKNPT-ELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                   I  R LC    P  E ++  V M++    P+  +   +  G C +  +++ L
Sbjct: 655 PPDAITYKIVYRGLCNGGGPIGEAVDFTVEMIERGNIPEFSSFVMLAEGLCTLS-MDDTL 713

Query: 300 KVLNDMV--AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVM----PQRGY 347
             L DM+    KF   +  T    I G L + + Q+AL+ L  ++    P+R Y
Sbjct: 714 VKLVDMIMEKAKFSEREIST----IRGFLKIRKFQDALSTLGGILDDMYPRRSY 763



 Score = 42.0 bits (97), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 75/187 (40%), Gaps = 14/187 (7%)

Query: 334 ALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVI 393
           AL +      Q  + P    Y  +LR L +    E  + V   M   G   D   + I +
Sbjct: 80  ALRVFNWASKQPNFVPSSSVYEEILRKLGKAGSFEYMRRVLEEMKLSGCEFDRGIFLIFV 139

Query: 394 DGLCESNQLDEA----KRFWDDI-VWPSNIHDNYVYAAMIKGLCRSGKIH--EAVHFLYE 446
           +   +    DE     K   D+  + P    D   Y  ++  L  + K+   E+ H    
Sbjct: 140 ESYGKFELYDEVVGIVKVMEDEYRIKP----DTRFYNVLLNVLVDANKLKLVESAH--SS 193

Query: 447 LVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           +V   +  ++  +N++I   CK    R A  ++ EM   GL+PD  T+  + + +   GN
Sbjct: 194 MVRRRIRHDVSTFNILIKALCKAHQVRPAILMMEEMPSYGLSPDETTFTTIMQGYIEGGN 253

Query: 507 -DFGLRI 512
            D  LRI
Sbjct: 254 LDGALRI 260


>gi|224113307|ref|XP_002316451.1| predicted protein [Populus trichocarpa]
 gi|222865491|gb|EEF02622.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  201 bits (511), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 149/536 (27%), Positives = 259/536 (48%), Gaps = 48/536 (8%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R+ +A KLF +M  R  VPN V++ TLI GYC+ GE+DVA  + + M+   V P+
Sbjct: 111 LCKEKRIRDAEKLFGEMSVRNLVPNRVTFNTLIDGYCKAGEVDVAIGLRERMKKEKVEPS 170

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +T++ L+ G+ + R +E A  ++ ++       +  + +   F  L+ S    G   ++
Sbjct: 171 IITFNSLLSGLCKARRIEEARCMLNEIKCNGFVPDGFTYS-IIFDGLLKSDDGAGAALDL 229

Query: 124 FRIAEDMPQGKSVN-EEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
           +R A     GK V  + + C  +++ LC+ G+   A  V+  + + GL P  V YN+IV+
Sbjct: 230 YREA----IGKGVKIDNYTCSILLNGLCKEGKVEKAEEVLKSLVEHGLVPGEVIYNTIVN 285

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           G C+ G   RA   +E+    G  P+   +  +++  C    ++KA + ++ M+ K    
Sbjct: 286 GYCQIGDMDRAILTIEQMESRGLRPNCIAFNSVIDKFCEMQMIDKAEEWVKKMVGKGIAP 345

Query: 243 RTRICNIYLRA---LCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                NI +     LC+    +    +L  M +   +P+VI+  ++IN  CK G+I EA 
Sbjct: 346 SVETYNILIDGYGRLCVF---SRCFQILEEMEENGEKPNVISYGSLINCLCKDGKILEAE 402

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
            VL DMV G+   P+A  +  +I G   VG+++EAL   +  M + G    IVTYN++++
Sbjct: 403 MVLRDMV-GRGVLPNANIYNMLIDGSCTVGKLREALRF-FDEMSKNGIGATIVTYNSLIK 460

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL----------------------- 396
           GL ++ +++EA+E+F  +   G   D  TY  +I G                        
Sbjct: 461 GLCKMGKLKEAEEMFFLITSTGHCPDVITYNSLISGYSNAGNSQKCLELYETMKKLGLKP 520

Query: 397 -----------CESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY 445
                      C    +   +  +++++  +   D  VY AMI     +G + +A     
Sbjct: 521 TINTFHPLISGCSKEGIKLKETLFNEMLQMNLSPDRVVYNAMIHCYQETGHVQKAFSLQK 580

Query: 446 ELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLH 501
           E+VD GV P+   YN +I G  K     E   ++ +M+  GL P+A T+ +L + H
Sbjct: 581 EMVDMGVRPDNKTYNSLILGHLKEGKLSETKDLVDDMKAKGLIPEADTYSLLIQGH 636



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 131/483 (27%), Positives = 232/483 (48%), Gaps = 8/483 (1%)

Query: 16  LFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVL 75
           LF +M   G  P+ + Y   +    + G++ +A ++F+ M+   V+PN   Y+VL+ G+ 
Sbjct: 53  LFKEMVGLGFRPDKLVYGRAMLAAVKLGDLKLAMELFETMKRRKVVPNVFVYNVLIGGLC 112

Query: 76  RTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKS 135
           + + +  A  L  ++  R     +L  N   F  L+D  C+ G V+    + E M + K 
Sbjct: 113 KEKRIRDAEKLFGEMSVR-----NLVPNRVTFNTLIDGYCKAGEVDVAIGLRERMKKEKV 167

Query: 136 VNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG-GCMRAY 194
                    ++  LC++ R   A  ++  ++  G  P   +Y+ I  GL K   G   A 
Sbjct: 168 EPSIITFNSLLSGLCKARRIEEARCMLNEIKCNGFVPDGFTYSIIFDGLLKSDDGAGAAL 227

Query: 195 QLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRAL 254
            L  E I  G     +T  +L+ GLC E  +EKA +VL+ ++    V    I N  +   
Sbjct: 228 DLYREAIGKGVKIDNYTCSILLNGLCKEGKVEKAEEVLKSLVEHGLVPGEVIYNTIVNGY 287

Query: 255 CLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPD 314
           C I +    +  +  M     +P+ I  N+VI+ FC+M  I++A + +  MV GK  AP 
Sbjct: 288 CQIGDMDRAILTIEQMESRGLRPNCIAFNSVIDKFCEMQMIDKAEEWVKKMV-GKGIAPS 346

Query: 315 AVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVF 374
             T+  +I G   +        +L + M + G  P +++Y +++  L +  ++ EA+ V 
Sbjct: 347 VETYNILIDGYGRLCVFSRCFQILEE-MEENGEKPNVISYGSLINCLCKDGKILEAEMVL 405

Query: 375 NCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRS 434
             M+G GV+ ++  Y ++IDG C   +L EA RF+D++           Y ++IKGLC+ 
Sbjct: 406 RDMVGRGVLPNANIYNMLIDGSCTVGKLREALRFFDEMSKNGIGATIVTYNSLIKGLCKM 465

Query: 435 GKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
           GK+ EA    + +  +G  P+++ YN +I G       ++  ++   M+K GL P   T+
Sbjct: 466 GKLKEAEEMFFLITSTGHCPDVITYNSLISGYSNAGNSQKCLELYETMKKLGLKPTINTF 525

Query: 495 RIL 497
             L
Sbjct: 526 HPL 528



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 125/506 (24%), Positives = 234/506 (46%), Gaps = 9/506 (1%)

Query: 3   QLCGLSRV-GEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVL 61
            +C  S++  +  +L+  M+  G +P+      ++     + + D    +F EM   G  
Sbjct: 4   SVCSESKMHSQVSELYDFMRQEGRLPSFGYVRMIVESLVESKKFDNVLDLFKEMVGLGFR 63

Query: 62  PNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVN 121
           P+ L Y   +   ++  D++    L  +L+E MK  + +  N   +  L+  LC+E  + 
Sbjct: 64  PDKLVYGRAMLAAVKLGDLK----LAMELFETMKRRK-VVPNVFVYNVLIGGLCKEKRIR 118

Query: 122 EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
           +  ++  +M     V        +ID  C++G    A  +   M+K  + PS++++NS++
Sbjct: 119 DAEKLFGEMSVRNLVPNRVTFNTLIDGYCKAGEVDVAIGLRERMKKEKVEPSIITFNSLL 178

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
            GLCK      A  +L E    G++P   TY ++ +GL    D   A   L      K V
Sbjct: 179 SGLCKARRIEEARCMLNEIKCNGFVPDGFTYSIIFDGLLKSDDGAGAALDLYREAIGKGV 238

Query: 242 D-RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                 C+I L  LC      +   VL  +++    P  +  NT++NG+C++G ++ A+ 
Sbjct: 239 KIDNYTCSILLNGLCKEGKVEKAEEVLKSLVEHGLVPGEVIYNTIVNGYCQIGDMDRAIL 298

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
            +  M + +   P+ + F ++I     +  I +A   + + M  +G +P + TYN ++ G
Sbjct: 299 TIEQMES-RGLRPNCIAFNSVIDKFCEMQMIDKAEEWVKK-MVGKGIAPSVETYNILIDG 356

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
             RL       ++   M   G   +  +Y  +I+ LC+  ++ EA+    D+V    + +
Sbjct: 357 YGRLCVFSRCFQILEEMEENGEKPNVISYGSLINCLCKDGKILEAEMVLRDMVGRGVLPN 416

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
             +Y  +I G C  GK+ EA+ F  E+  +G+   IV YN +I G CK+   +EA ++  
Sbjct: 417 ANIYNMLIDGSCTVGKLREALRFFDEMSKNGIGATIVTYNSLIKGLCKMGKLKEAEEMFF 476

Query: 481 EMRKNGLNPDAVTWRILDKLHGNRGN 506
            +   G  PD +T+  L   + N GN
Sbjct: 477 LITSTGHCPDVITYNSLISGYSNAGN 502



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 122/489 (24%), Positives = 219/489 (44%), Gaps = 45/489 (9%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   +V +A ++   +   G VP  V Y T+++GYC+ G+MD A    ++M   G+
Sbjct: 249 LNGLCKEGKVEKAEEVLKSLVEHGLVPGEVIYNTIVNGYCQIGDMDRAILTIEQMESRGL 308

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN + ++ ++      + +++A     + W +    + ++ +   +  L+D   R    
Sbjct: 309 RPNCIAFNSVIDKFCEMQMIDKA-----EEWVKKMVGKGIAPSVETYNILIDGYGRLCVF 363

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +  F+I E+M +        + G +I+ LC+ G+   A  V+  M  RG+ P+   YN +
Sbjct: 364 SRCFQILEEMEENGEKPNVISYGSLINCLCKDGKILEAEMVLRDMVGRGVLPNANIYNML 423

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G C  G    A +  +E  + G   +  TY  L++GLC    L++A ++   + S   
Sbjct: 424 IDGSCTVGKLREALRFFDEMSKNGIGATIVTYNSLIKGLCKMGKLKEAEEMFFLITS--- 480

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
              T  C                             PDVIT N++I+G+   G  ++ L+
Sbjct: 481 ---TGHC-----------------------------PDVITYNSLISGYSNAGNSQKCLE 508

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVG-RIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           +   M       P   TF  +I G    G +++E    L+  M Q   SP  V YNA++ 
Sbjct: 509 LYETMKKLGL-KPTINTFHPLISGCSKEGIKLKET---LFNEMLQMNLSPDRVVYNAMIH 564

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
                  V++A  +   M+ +GV  D+ TY  +I G  +  +L E K   DD+     I 
Sbjct: 565 CYQETGHVQKAFSLQKEMVDMGVRPDNKTYNSLILGHLKEGKLSETKDLVDDMKAKGLIP 624

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           +   Y+ +I+G C     + A  +  E++++G  PN+   N +  G  K    +EA  I 
Sbjct: 625 EADTYSLLIQGHCDLKDFNGAYVWYREMLENGFLPNVCICNELSTGLRKDGRLQEAQSIC 684

Query: 480 REMRKNGLN 488
            EM  NG++
Sbjct: 685 SEMIANGMD 693


>gi|15238562|ref|NP_200798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171023|sp|Q9FJE6.1|PP437_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g59900
 gi|9757911|dbj|BAB08358.1| unnamed protein product [Arabidopsis thaliana]
 gi|332009866|gb|AED97249.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 907

 Score =  201 bits (511), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 137/489 (28%), Positives = 236/489 (48%), Gaps = 17/489 (3%)

Query: 11  GEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVL 70
           G A +LF DM S G  P+V  YT +I   C   ++  A ++   M   G   N + Y+VL
Sbjct: 209 GLAMELFNDMVSVGIRPDVYIYTGVIRSLCELKDLSRAKEMIAHMEATGCDVNIVPYNVL 268

Query: 71  VRGVLRTRDVERANVLMFKLWERMKEEEDLSVNN-----AAFANLVDSLCREGYVNEVFR 125
           + G+ + +          K+WE +  ++DL+  +       +  LV  LC+         
Sbjct: 269 IDGLCKKQ----------KVWEAVGIKKDLAGKDLKPDVVTYCTLVYGLCKVQEFEIGLE 318

Query: 126 IAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLC 185
           + ++M   +    E A   +++ L + G+   A  +V  +   G++P+L  YN+++  LC
Sbjct: 319 MMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLC 378

Query: 186 KHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTR 245
           K      A  L +   + G  P++ TY +L++  C    L+ A   L  M+         
Sbjct: 379 KGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVY 438

Query: 246 ICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM 305
             N  +   C   + +     +  M+  + +P V+T  +++ G+C  G+I +AL++ ++M
Sbjct: 439 PYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEM 498

Query: 306 VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLR 365
             GK  AP   TFTT++ GL   G I++A+  L+  M +    P  VTYN ++ G     
Sbjct: 499 -TGKGIAPSIYTFTTLLSGLFRAGLIRDAVK-LFNEMAEWNVKPNRVTYNVMIEGYCEEG 556

Query: 366 RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYA 425
            + +A E    M   G+V D+ +Y  +I GLC + Q  EAK F D +   +   +   Y 
Sbjct: 557 DMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYT 616

Query: 426 AMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN 485
            ++ G CR GK+ EA+    E+V  GV  ++VCY V+IDG+ K   ++  + +L+EM   
Sbjct: 617 GLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMHDR 676

Query: 486 GLNPDAVTW 494
           GL PD V +
Sbjct: 677 GLKPDDVIY 685



 Score =  181 bits (460), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 135/532 (25%), Positives = 237/532 (44%), Gaps = 46/532 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   +  EA  LF  M   G  PN V+Y+ LI  +CR G++D A     EM   G+
Sbjct: 374 IDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGL 433

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             +   Y+ L+ G  +  D+  A   M ++  +      L      + +L+   C +G +
Sbjct: 434 KLSVYPYNSLINGHCKFGDISAAEGFMAEMINK-----KLEPTVVTYTSLMGGYCSKGKI 488

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           N+  R+  +M         +    ++  L R+G    A ++   M +  + P+ V+YN +
Sbjct: 489 NKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVM 548

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLC-------------------- 220
           + G C+ G   +A++ L+E  + G +P  ++Y+ L+ GLC                    
Sbjct: 549 IEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNC 608

Query: 221 ---------------GESDLEKARKVLQFMLSKKDVDRTRIC-NIYLRALCLIKNPTELL 264
                           E  LE+A  V Q M+ ++ VD   +C  + +      K+     
Sbjct: 609 ELNEICYTGLLHGFCREGKLEEALSVCQEMV-QRGVDLDLVCYGVLIDGSLKHKDRKLFF 667

Query: 265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 324
            +L  M     +PD +   ++I+   K G  +EA  +  D++  + C P+ VT+T +I G
Sbjct: 668 GLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIW-DLMINEGCVPNEVTYTAVING 726

Query: 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLR-RVEEAKEVFNCMLGIGVV 383
           L   G + EA  L  ++ P     P  VTY   L  L +    +++A E+ N +L  G++
Sbjct: 727 LCKAGFVNEAEVLCSKMQPVSSV-PNQVTYGCFLDILTKGEVDMQKAVELHNAILK-GLL 784

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
           A++ TY ++I G C   +++EA      ++      D   Y  MI  LCR   + +A+  
Sbjct: 785 ANTATYNMLIRGFCRQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIEL 844

Query: 444 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWR 495
              + + G+ P+ V YN +I G C      +A ++  EM + GL P+  T R
Sbjct: 845 WNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGLIPNNKTSR 896



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 140/601 (23%), Positives = 249/601 (41%), Gaps = 102/601 (16%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   +V EA  +  D+  +   P+VV+Y TL++G C+  E ++  ++ DEM     
Sbjct: 269 IDGLCKKQKVWEAVGIKKDLAGKDLKPDVVTYCTLVYGLCKVQEFEIGLEMMDEMLCLRF 328

Query: 61  LPNSLTYSVLVRGVLRTRDVERA-------------------NVLMFKLWERMKEEE--- 98
            P+    S LV G+ +   +E A                   N L+  L +  K  E   
Sbjct: 329 SPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAEL 388

Query: 99  --------DLSVNNAAFANLVDSLCREGYVNEVFRIAEDM----------PQGKSVNEEF 140
                    L  N+  ++ L+D  CR G ++       +M          P    +N   
Sbjct: 389 LFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHC 448

Query: 141 ACG-------------------------HMIDSLCRSGRNHGASRVVYVMRKRGLTPSLV 175
             G                          ++   C  G+ + A R+ + M  +G+ PS+ 
Sbjct: 449 KFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIY 508

Query: 176 SYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM 235
           ++ +++ GL + G    A +L  E  ++   P+  TY V++EG C E D+ KA + L+ M
Sbjct: 509 TFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEM 568

Query: 236 LSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 295
             K  V  T      +  LCL    +E    +  + +  C+ + I    +++GFC+ G++
Sbjct: 569 TEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGKL 628

Query: 296 EEALKVLNDMVA----------------------------------GKFCAPDAVTFTTI 321
           EEAL V  +MV                                    +   PD V +T++
Sbjct: 629 EEALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMHDRGLKPDDVIYTSM 688

Query: 322 IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG 381
           I      G  +EA   ++ +M   G  P  VTY AV+ GL +   V EA+ + + M  + 
Sbjct: 689 IDAKSKTGDFKEAFG-IWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEVLCSKMQPVS 747

Query: 382 VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAV 441
            V +  TY   +D L +     +      + +    + +   Y  +I+G CR G+I EA 
Sbjct: 748 SVPNQVTYGCFLDILTKGEVDMQKAVELHNAILKGLLANTATYNMLIRGFCRQGRIEEAS 807

Query: 442 HFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLH 501
             +  ++  GV+P+ + Y  +I+  C+ +  ++A ++   M + G+ PD V +  L  +H
Sbjct: 808 ELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTL--IH 865

Query: 502 G 502
           G
Sbjct: 866 G 866



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 94/335 (28%), Positives = 174/335 (51%), Gaps = 4/335 (1%)

Query: 164 VMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGES 223
           ++ K  L P + + ++++HGL K      A +L  + +  G  P  + Y  ++  LC   
Sbjct: 182 MITKVSLLPEVRTLSALLHGLVKFRHFGLAMELFNDMVSVGIRPDVYIYTGVIRSLCELK 241

Query: 224 DLEKARKVLQFMLSKK-DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITL 282
           DL +A++++  M +   DV+     N+ +  LC  +   E + +   +     +PDV+T 
Sbjct: 242 DLSRAKEMIAHMEATGCDVNIVPY-NVLIDGLCKKQKVWEAVGIKKDLAGKDLKPDVVTY 300

Query: 283 NTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVM 342
            T++ G CK+   E  L+++++M+  +F +P     ++++ GL   G+I+EALNL+ +V+
Sbjct: 301 CTLVYGLCKVQEFEIGLEMMDEMLCLRF-SPSEAAVSSLVEGLRKRGKIEEALNLVKRVV 359

Query: 343 PQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQL 402
              G SP +  YNA++  L + R+  EA+ +F+ M  IG+  +  TY+I+ID  C   +L
Sbjct: 360 -DFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKL 418

Query: 403 DEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVV 462
           D A  F  ++V        Y Y ++I G C+ G I  A  F+ E+++  + P +V Y  +
Sbjct: 419 DTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSL 478

Query: 463 IDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           + G C      +A ++  EM   G+ P   T+  L
Sbjct: 479 MGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTL 513



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 72/153 (47%)

Query: 330 RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTY 389
           R+ + + +   ++ +    P + T +A+L GL + R    A E+FN M+ +G+  D   Y
Sbjct: 171 RVLDGVLVFKMMITKVSLLPEVRTLSALLHGLVKFRHFGLAMELFNDMVSVGIRPDVYIY 230

Query: 390 AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449
             VI  LCE   L  AK     +       +   Y  +I GLC+  K+ EAV    +L  
Sbjct: 231 TGVIRSLCELKDLSRAKEMIAHMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAG 290

Query: 450 SGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
             + P++V Y  ++ G CK+       +++ EM
Sbjct: 291 KDLKPDVVTYCTLVYGLCKVQEFEIGLEMMDEM 323



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 70/142 (49%), Gaps = 1/142 (0%)

Query: 354 YNAVLRGLFRLRRVEEAKEVFNCMLG-IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI 412
           ++ +++   R RRV +   VF  M+  + ++ +  T + ++ GL +      A   ++D+
Sbjct: 159 FDLLIQHYVRSRRVLDGVLVFKMMITKVSLLPEVRTLSALLHGLVKFRHFGLAMELFNDM 218

Query: 413 VWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMK 472
           V      D Y+Y  +I+ LC    +  A   +  +  +G   NIV YNV+IDG CK    
Sbjct: 219 VSVGIRPDVYIYTGVIRSLCELKDLSRAKEMIAHMEATGCDVNIVPYNVLIDGLCKKQKV 278

Query: 473 REAYQILREMRKNGLNPDAVTW 494
            EA  I +++    L PD VT+
Sbjct: 279 WEAVGIKKDLAGKDLKPDVVTY 300


>gi|222636130|gb|EEE66262.1| hypothetical protein OsJ_22447 [Oryza sativa Japonica Group]
          Length = 876

 Score =  201 bits (511), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 139/496 (28%), Positives = 237/496 (47%), Gaps = 17/496 (3%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C    +  AH+ F  +   G  P   +   L+ GYCRTGE+  A  +F  M   G   N 
Sbjct: 79  CKEGDLTTAHRYFRLLLEGGLEPETFTCNALVLGYCRTGELRKACWLFLMMPLMGCQRNE 138

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
            +Y++L++G+   + V +A VL       M + +  S N  AF  L+  LC+ G V +  
Sbjct: 139 YSYTILIQGLCDAKCVRKALVLFL-----MMKRDGCSPNVRAFTFLISGLCKSGRVGDAR 193

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
            + + MPQ   V        MI    + GR + A ++  +M K G  P   +YN++++GL
Sbjct: 194 LLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGL 253

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
           C       A +LL   ++ G+ P+  T+  L+ G C     + A ++   M+S K     
Sbjct: 254 CDQKT-EEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDL 312

Query: 245 RICNIYLRALCL---IKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
           ++    + +L     +K   ELLN +         P+VIT  ++I+G+CK G+++ AL+V
Sbjct: 313 QVFGKLINSLIKKDRLKEAKELLNEIS---ANGLVPNVITYTSIIDGYCKSGKVDIALEV 369

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
           L  M+    C P+A T+ ++++GL+   ++ +A+ LL + M + G  P ++TY  +L+G 
Sbjct: 370 LK-MMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTK-MQKDGIIPNVITYTTLLQGQ 427

Query: 362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
                 + A  +F  M   G+  D   YA++ D LC++ + +EA  F   IV        
Sbjct: 428 CDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSF---IVRKGVALTK 484

Query: 422 YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
             Y  +I G  ++G    A   +  ++D G TP+   Y+V++   CK     EA  IL +
Sbjct: 485 VYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQ 544

Query: 482 MRKNGLNPDAVTWRIL 497
           M   G+      + IL
Sbjct: 545 MSLRGIKCTIFAYTIL 560



 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 135/503 (26%), Positives = 225/503 (44%), Gaps = 12/503 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   RVG+A  LF  M   G VP+V++Y  +I GY + G M+ A K+ + M   G  P+
Sbjct: 183 LCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPD 242

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             TY+ L+ G+   +  E   +L   +      +E  +     F NL++  C     ++ 
Sbjct: 243 DWTYNTLIYGLCDQKTEEAEELLNNAV------KEGFTPTVVTFTNLINGYCMAEKFDDA 296

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            R+   M   K   +    G +I+SL +  R   A  ++  +   GL P++++Y SI+ G
Sbjct: 297 LRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDG 356

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK G    A ++L+   + G  P+  TY  L+ GL  +  L KA  +L  M     +  
Sbjct: 357 YCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPN 416

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                  L+  C   +      +   M Q   +PD      + +  CK GR EEA     
Sbjct: 417 VITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYS--- 473

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
             +  K  A   V +TT+I G    G    A  L+ + M   G +P   TY+ +L  L +
Sbjct: 474 -FIVRKGVALTKVYYTTLIDGFSKAGNTDFAATLI-ERMIDEGCTPDSYTYSVLLHALCK 531

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
            +R+ EA  + + M   G+      Y I+ID +    + D AKR ++++    +      
Sbjct: 532 QKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATT 591

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y   I   C+ G++ +A   + ++   GV P++V YN++IDG   +     A+  L+ M 
Sbjct: 592 YTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMV 651

Query: 484 KNGLNPDAVTWRILDKLHGNRGN 506
                P+  T+ +L K H  +GN
Sbjct: 652 GASCEPNYWTYCLLLK-HLLKGN 673



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 135/511 (26%), Positives = 244/511 (47%), Gaps = 36/511 (7%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           R+ EA +L  ++ + G VPNV++YT++I GYC++G++D+A +V   M   G  PN+ TY+
Sbjct: 327 RLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYN 386

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
            L+ G+++ + + +A  L+ K+     +++ +  N   +  L+   C E   +  FR+ E
Sbjct: 387 SLMYGLVKDKKLHKAMALLTKM-----QKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFE 441

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
            M Q     +E A   + D+LC++GR   A    +++RK G+  + V Y +++ G  K G
Sbjct: 442 MMEQNGLKPDEHAYAVLTDALCKAGRAEEAYS--FIVRK-GVALTKVYYTTLIDGFSKAG 498

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
               A  L+E  I  G  P  +TY VL+  LC +  L +A  +L  M       R   C 
Sbjct: 499 NTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSL-----RGIKCT 553

Query: 249 IYLRALCLIKNPTE-----LLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
           I+   + + +   E        +   M  +  +P   T    IN +CK GR+E+A  ++ 
Sbjct: 554 IFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLIL 613

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR---- 359
            M   +  APD VT+  +I G  ++G I  A + L + M      P   TY  +L+    
Sbjct: 614 KM-EREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKR-MVGASCEPNYWTYCLLLKHLLK 671

Query: 360 ------------GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKR 407
                       G++ L  ++   ++   M+  G+    TTY+ +I G C++ +L+EA  
Sbjct: 672 GNLAYVRSVDTSGMWNLIELDITWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACL 731

Query: 408 FWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGAC 467
             D +       +  +Y  +IK  C +    +A+ F+  + + G  P +  Y +++ G C
Sbjct: 732 LLDHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMSECGFQPQLESYRLLVVGLC 791

Query: 468 KLSMKREAYQILREMRKNGLNPDAVTWRILD 498
                 +   +  ++ + G N D V W+IL+
Sbjct: 792 NEGDFEKVKSLFCDLLELGYNHDEVAWKILN 822



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 115/478 (24%), Positives = 217/478 (45%), Gaps = 36/478 (7%)

Query: 50  KVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSV------- 102
           +V+ ++   G+LP+++TY+ +++   +  D+  A+     L E   E E  +        
Sbjct: 54  RVYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRYFRLLLEGGLEPETFTCNALVLGY 113

Query: 103 -----------------------NNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
                                  N  ++  L+  LC    V +   +   M +       
Sbjct: 114 CRTGELRKACWLFLMMPLMGCQRNEYSYTILIQGLCDAKCVRKALVLFLMMKRDGCSPNV 173

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
            A   +I  LC+SGR   A  +   M + G+ PS+++YN+++ G  K G    A ++ E 
Sbjct: 174 RAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKEL 233

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
             + G  P + TY  L+ GLC +   E+A ++L   + +            +   C+ + 
Sbjct: 234 MEKNGCHPDDWTYNTLIYGLCDQKT-EEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEK 292

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
             + L +   M+ ++C+ D+     +IN   K  R++EA ++LN++ A     P+ +T+T
Sbjct: 293 FDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGL-VPNVITYT 351

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
           +II G    G++  AL +L ++M + G  P   TYN+++ GL + +++ +A  +   M  
Sbjct: 352 SIIDGYCKSGKVDIALEVL-KMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQK 410

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
            G++ +  TY  ++ G C+ +  D A R ++ +       D + YA +   LC++G+  E
Sbjct: 411 DGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEE 470

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           A  F   +V  GV    V Y  +IDG  K      A  ++  M   G  PD+ T+ +L
Sbjct: 471 AYSF---IVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVL 525



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 108/435 (24%), Positives = 200/435 (45%), Gaps = 42/435 (9%)

Query: 100 LSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGAS 159
           L+++   +   + SL R      + R+   + Q   + +      MI S C+ G    A 
Sbjct: 29  LALSPKCYNFALRSLARFDMTEYMGRVYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAH 88

Query: 160 RVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGL 219
           R   ++ + GL P   + N++V G C+ G   +A  L       G   +E++Y +L++GL
Sbjct: 89  RYFRLLLEGGLEPETFTCNALVLGYCRTGELRKACWLFLMMPLMGCQRNEYSYTILIQGL 148

Query: 220 CGESDLEKARKVLQFMLSKKD--VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQP 277
           C    + KA  ++ F++ K+D      R     +  LC      +   +   M Q    P
Sbjct: 149 CDAKCVRKA--LVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVP 206

Query: 278 DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNL 337
            V+T N +I G+ K+GR+ +ALK+  +++    C PD  T+ T+I+GL +  + +EA  L
Sbjct: 207 SVMTYNAMIVGYSKLGRMNDALKI-KELMEKNGCHPDDWTYNTLIYGLCD-QKTEEAEEL 264

Query: 338 LYQVMPQRGYSPGIVTYNAVLRG-----------------------------------LF 362
           L   + + G++P +VT+  ++ G                                   L 
Sbjct: 265 LNNAVKE-GFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLI 323

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
           +  R++EAKE+ N +   G+V +  TY  +IDG C+S ++D A      +       + +
Sbjct: 324 KKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAW 383

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
            Y +++ GL +  K+H+A+  L ++   G+ PN++ Y  ++ G C       A+++   M
Sbjct: 384 TYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMM 443

Query: 483 RKNGLNPDAVTWRIL 497
            +NGL PD   + +L
Sbjct: 444 EQNGLKPDEHAYAVL 458



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/272 (25%), Positives = 119/272 (43%), Gaps = 22/272 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C   R+ +A  L   M+  G  P+VV+Y  LI G    G +D A+     M     
Sbjct: 596 INSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASC 655

Query: 61  LPNSLTYSVLVRGVLR-----TRDVERANV-------LMFKLWERMKEEEDLSVNNAAFA 108
            PN  TY +L++ +L+      R V+ + +       + ++L ERM +   L+     ++
Sbjct: 656 EPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERMVKH-GLNPTVTTYS 714

Query: 109 NLVDSLCREGYVNEVFRIAEDM-PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRK 167
           +L+   C+ G + E   + + M  +G S NE+     +I   C +     A   V +M +
Sbjct: 715 SLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIY-TLLIKCCCDTKFFEKALSFVSIMSE 773

Query: 168 RGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEK 227
            G  P L SY  +V GLC  G   +   L  + ++ GY   E  +K+L +GL     ++ 
Sbjct: 774 CGFQPQLESYRLLVVGLCNEGDFEKVKSLFCDLLELGYNHDEVAWKILNDGLLKAGYVDI 833

Query: 228 ARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
             ++L  M         R C I  +   L+ N
Sbjct: 834 CFQMLSIM-------EKRYCCISSQTYALVTN 858


>gi|115469638|ref|NP_001058418.1| Os06g0690900 [Oryza sativa Japonica Group]
 gi|52076717|dbj|BAD45630.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|53793285|dbj|BAD54507.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113596458|dbj|BAF20332.1| Os06g0690900 [Oryza sativa Japonica Group]
          Length = 991

 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 139/496 (28%), Positives = 237/496 (47%), Gaps = 17/496 (3%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C    +  AH+ F  +   G  P   +   L+ GYCRTGE+  A  +F  M   G   N 
Sbjct: 194 CKEGDLTTAHRYFRLLLEGGLEPETFTCNALVLGYCRTGELRKACWLFLMMPLMGCQRNE 253

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
            +Y++L++G+   + V +A VL       M + +  S N  AF  L+  LC+ G V +  
Sbjct: 254 YSYTILIQGLCDAKCVRKALVLFL-----MMKRDGCSPNVRAFTFLISGLCKSGRVGDAR 308

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
            + + MPQ   V        MI    + GR + A ++  +M K G  P   +YN++++GL
Sbjct: 309 LLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGL 368

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
           C       A +LL   ++ G+ P+  T+  L+ G C     + A ++   M+S K     
Sbjct: 369 CDQKT-EEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDL 427

Query: 245 RICNIYLRALC---LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
           ++    + +L     +K   ELLN +         P+VIT  ++I+G+CK G+++ AL+V
Sbjct: 428 QVFGKLINSLIKKDRLKEAKELLNEIS---ANGLVPNVITYTSIIDGYCKSGKVDIALEV 484

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
           L  M+    C P+A T+ ++++GL+   ++ +A+ LL + M + G  P ++TY  +L+G 
Sbjct: 485 LK-MMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTK-MQKDGIIPNVITYTTLLQGQ 542

Query: 362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
                 + A  +F  M   G+  D   YA++ D LC++ + +EA  F   IV        
Sbjct: 543 CDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSF---IVRKGVALTK 599

Query: 422 YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
             Y  +I G  ++G    A   +  ++D G TP+   Y+V++   CK     EA  IL +
Sbjct: 600 VYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQ 659

Query: 482 MRKNGLNPDAVTWRIL 497
           M   G+      + IL
Sbjct: 660 MSLRGIKCTIFAYTIL 675



 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 135/503 (26%), Positives = 225/503 (44%), Gaps = 12/503 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   RVG+A  LF  M   G VP+V++Y  +I GY + G M+ A K+ + M   G  P+
Sbjct: 298 LCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPD 357

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             TY+ L+ G+   +  E   +L   +      +E  +     F NL++  C     ++ 
Sbjct: 358 DWTYNTLIYGLCDQKTEEAEELLNNAV------KEGFTPTVVTFTNLINGYCMAEKFDDA 411

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            R+   M   K   +    G +I+SL +  R   A  ++  +   GL P++++Y SI+ G
Sbjct: 412 LRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDG 471

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK G    A ++L+   + G  P+  TY  L+ GL  +  L KA  +L  M     +  
Sbjct: 472 YCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPN 531

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                  L+  C   +      +   M Q   +PD      + +  CK GR EEA     
Sbjct: 532 VITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYS--- 588

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
             +  K  A   V +TT+I G    G    A  L+ + M   G +P   TY+ +L  L +
Sbjct: 589 -FIVRKGVALTKVYYTTLIDGFSKAGNTDFAATLI-ERMIDEGCTPDSYTYSVLLHALCK 646

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
            +R+ EA  + + M   G+      Y I+ID +    + D AKR ++++    +      
Sbjct: 647 QKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATT 706

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y   I   C+ G++ +A   + ++   GV P++V YN++IDG   +     A+  L+ M 
Sbjct: 707 YTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMV 766

Query: 484 KNGLNPDAVTWRILDKLHGNRGN 506
                P+  T+ +L K H  +GN
Sbjct: 767 GASCEPNYWTYCLLLK-HLLKGN 788



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 136/519 (26%), Positives = 249/519 (47%), Gaps = 36/519 (6%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ L    R+ EA +L  ++ + G VPNV++YT++I GYC++G++D+A +V   M   G 
Sbjct: 434 INSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGC 493

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN+ TY+ L+ G+++ + + +A  L+ K+     +++ +  N   +  L+   C E   
Sbjct: 494 QPNAWTYNSLMYGLVKDKKLHKAMALLTKM-----QKDGIIPNVITYTTLLQGQCDEHDF 548

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +  FR+ E M Q     +E A   + D+LC++GR   A    +++RK G+  + V Y ++
Sbjct: 549 DNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEA--YSFIVRK-GVALTKVYYTTL 605

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G  K G    A  L+E  I  G  P  +TY VL+  LC +  L +A  +L  M S + 
Sbjct: 606 IDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQM-SLRG 664

Query: 241 VDRTRICNIYLRALCLIKNPTE-----LLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 295
           +     C I+   + + +   E        +   M  +  +P   T    IN +CK GR+
Sbjct: 665 IK----CTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRL 720

Query: 296 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN 355
           E+A  ++  M   +  APD VT+  +I G  ++G I  A + L + M      P   TY 
Sbjct: 721 EDAEDLILKM-EREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKR-MVGASCEPNYWTYC 778

Query: 356 AVLR----------------GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCES 399
            +L+                G++ L  ++   ++   M+  G+    TTY+ +I G C++
Sbjct: 779 LLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERMVKHGLNPTVTTYSSLIAGFCKA 838

Query: 400 NQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCY 459
            +L+EA    D +       +  +Y  +IK  C +    +A+ F+  + + G  P +  Y
Sbjct: 839 GRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMSECGFQPQLESY 898

Query: 460 NVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILD 498
            +++ G C      +   +  ++ + G N D V W+IL+
Sbjct: 899 RLLVVGLCNEGDFEKVKSLFCDLLELGYNHDEVAWKILN 937



 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 115/478 (24%), Positives = 217/478 (45%), Gaps = 36/478 (7%)

Query: 50  KVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSV------- 102
           +V+ ++   G+LP+++TY+ +++   +  D+  A+     L E   E E  +        
Sbjct: 169 RVYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRYFRLLLEGGLEPETFTCNALVLGY 228

Query: 103 -----------------------NNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
                                  N  ++  L+  LC    V +   +   M +       
Sbjct: 229 CRTGELRKACWLFLMMPLMGCQRNEYSYTILIQGLCDAKCVRKALVLFLMMKRDGCSPNV 288

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
            A   +I  LC+SGR   A  +   M + G+ PS+++YN+++ G  K G    A ++ E 
Sbjct: 289 RAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKEL 348

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
             + G  P + TY  L+ GLC +   E+A ++L   + +            +   C+ + 
Sbjct: 349 MEKNGCHPDDWTYNTLIYGLCDQKT-EEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEK 407

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
             + L +   M+ ++C+ D+     +IN   K  R++EA ++LN++ A     P+ +T+T
Sbjct: 408 FDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGL-VPNVITYT 466

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
           +II G    G++  AL +L ++M + G  P   TYN+++ GL + +++ +A  +   M  
Sbjct: 467 SIIDGYCKSGKVDIALEVL-KMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQK 525

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
            G++ +  TY  ++ G C+ +  D A R ++ +       D + YA +   LC++G+  E
Sbjct: 526 DGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEE 585

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           A  F   +V  GV    V Y  +IDG  K      A  ++  M   G  PD+ T+ +L
Sbjct: 586 AYSF---IVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVL 640



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 108/435 (24%), Positives = 200/435 (45%), Gaps = 42/435 (9%)

Query: 100 LSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGAS 159
           L+++   +   + SL R      + R+   + Q   + +      MI S C+ G    A 
Sbjct: 144 LALSPKCYNFALRSLARFDMTEYMGRVYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAH 203

Query: 160 RVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGL 219
           R   ++ + GL P   + N++V G C+ G   +A  L       G   +E++Y +L++GL
Sbjct: 204 RYFRLLLEGGLEPETFTCNALVLGYCRTGELRKACWLFLMMPLMGCQRNEYSYTILIQGL 263

Query: 220 CGESDLEKARKVLQFMLSKKD--VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQP 277
           C    + KA  ++ F++ K+D      R     +  LC      +   +   M Q    P
Sbjct: 264 CDAKCVRKA--LVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVP 321

Query: 278 DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNL 337
            V+T N +I G+ K+GR+ +ALK+  +++    C PD  T+ T+I+GL +  + +EA  L
Sbjct: 322 SVMTYNAMIVGYSKLGRMNDALKI-KELMEKNGCHPDDWTYNTLIYGLCD-QKTEEAEEL 379

Query: 338 LYQVMPQRGYSPGIVTYNAVLRG-----------------------------------LF 362
           L   + + G++P +VT+  ++ G                                   L 
Sbjct: 380 LNNAV-KEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLI 438

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
           +  R++EAKE+ N +   G+V +  TY  +IDG C+S ++D A      +       + +
Sbjct: 439 KKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAW 498

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
            Y +++ GL +  K+H+A+  L ++   G+ PN++ Y  ++ G C       A+++   M
Sbjct: 499 TYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMM 558

Query: 483 RKNGLNPDAVTWRIL 497
            +NGL PD   + +L
Sbjct: 559 EQNGLKPDEHAYAVL 573



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/272 (25%), Positives = 119/272 (43%), Gaps = 22/272 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C   R+ +A  L   M+  G  P+VV+Y  LI G    G +D A+     M     
Sbjct: 711 INSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASC 770

Query: 61  LPNSLTYSVLVRGVLR-----TRDVERANV-------LMFKLWERMKEEEDLSVNNAAFA 108
            PN  TY +L++ +L+      R V+ + +       + ++L ERM +   L+     ++
Sbjct: 771 EPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERMVKH-GLNPTVTTYS 829

Query: 109 NLVDSLCREGYVNEVFRIAEDM-PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRK 167
           +L+   C+ G + E   + + M  +G S NE+     +I   C +     A   V +M +
Sbjct: 830 SLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIY-TLLIKCCCDTKFFEKALSFVSIMSE 888

Query: 168 RGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEK 227
            G  P L SY  +V GLC  G   +   L  + ++ GY   E  +K+L +GL     ++ 
Sbjct: 889 CGFQPQLESYRLLVVGLCNEGDFEKVKSLFCDLLELGYNHDEVAWKILNDGLLKAGYVDI 948

Query: 228 ARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
             ++L  M         R C I  +   L+ N
Sbjct: 949 CFQMLSIM-------EKRYCCISSQTYALVTN 973


>gi|255541015|ref|XP_002511572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550687|gb|EEF52174.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 735

 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 146/527 (27%), Positives = 254/527 (48%), Gaps = 26/527 (4%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M+ L       +AHK++  MK  G  P+V ++T  I  +CRT     A ++ + M   G 
Sbjct: 118 MNILVEYGYFNQAHKVYLRMKHEGIAPDVCTFTIRIKSFCRTKRPLAALRLLNNMPSQGC 177

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             N++ Y  ++ G       E   V  ++L+ +M     +  + A F  L+  LC++G++
Sbjct: 178 ELNAVVYCTVISGFYE----ENYQVEAYELFNKML-RLGIFPHIATFNKLMHILCKKGHL 232

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGA-SRVV------YVMRKRGLTPS 173
            E  ++   + +       F     I  LCR G   GA S+VV      + M  +GL P 
Sbjct: 233 QEGEKLLNKVLKNGVCPNLFTFNIFIQGLCRKGVLEGANSKVVEAENYLHKMVNKGLEPD 292

Query: 174 LVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQ 233
             +YN+I++G  K G    A ++L++    G++P E TY  L+ G+C + D++ A  + +
Sbjct: 293 DFTYNTIIYGYSKVGKIQDASRILKDAKFKGFVPDEFTYCSLIIGVCQDGDIDHALALFE 352

Query: 234 FMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMG 293
             L K       + N  ++ L       + L ++  M +    PD+ T N VING CKMG
Sbjct: 353 EALGKGLKPSIVLYNTLIKGLSQQGLVLKALQLMNDMSKEGMSPDIWTYNLVINGLCKMG 412

Query: 294 RIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVT 353
            + +A  +LN  +A  +  PD  TF T+I G     ++  A+ +L   M   G +P ++T
Sbjct: 413 CVSDANNLLNAAIAKGYL-PDIFTFNTLIDGYCKRLKMDNAIGIL-DSMWSHGVTPDVIT 470

Query: 354 YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413
           YN++L GL +  + E+  E F  ++  G + +  TY I+I+ LC++ ++ EA    ++I 
Sbjct: 471 YNSILNGLCKAAKPEDVMETFKMIMEKGCLPNIITYNILIESLCKARKVTEALDLLEEIR 530

Query: 414 WPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS-GVTPNIVCYNVVIDG-ACKLSM 471
               I D   +  +I G C +G + EA      +     +   +  YN++I+  + KL M
Sbjct: 531 NRGLIPDPVSFGTVISGFCNNGDLDEAYQLFRRMEQQYRICHTVATYNIMINAFSEKLDM 590

Query: 472 KREAYQILREMRKNGLNPDAVTWRILDKLHG-------NRGNDFGLR 511
              A ++  EM   G +PD+ T+R++  + G       N G DF L+
Sbjct: 591 DM-AQKLFHEMGDKGCDPDSYTYRVM--IDGFCKVGNVNSGYDFLLK 634



 Score =  191 bits (486), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 127/489 (25%), Positives = 233/489 (47%), Gaps = 15/489 (3%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           EA++LF  M   G  P++ ++  L+H  C+ G +    K+ +++   GV PN  T+++ +
Sbjct: 199 EAYELFNKMLRLGIFPHIATFNKLMHILCKKGHLQEGEKLLNKVLKNGVCPNLFTFNIFI 258

Query: 72  RGVLRTRDVERANV-------LMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           +G+ R   +E AN         + K+  +  E +D + N      ++    + G + +  
Sbjct: 259 QGLCRKGVLEGANSKVVEAENYLHKMVNKGLEPDDFTYN-----TIIYGYSKVGKIQDAS 313

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
           RI +D      V +EF    +I  +C+ G    A  +      +GL PS+V YN+++ GL
Sbjct: 314 RILKDAKFKGFVPDEFTYCSLIIGVCQDGDIDHALALFEEALGKGLKPSIVLYNTLIKGL 373

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
            + G  ++A QL+ +  + G  P   TY +++ GLC    +  A  +L   ++K  +   
Sbjct: 374 SQQGLVLKALQLMNDMSKEGMSPDIWTYNLVINGLCKMGCVSDANNLLNAAIAKGYLPDI 433

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
              N  +   C        + +L  M      PDVIT N+++NG CK  + E+ ++    
Sbjct: 434 FTFNTLIDGYCKRLKMDNAIGILDSMWSHGVTPDVITYNSILNGLCKAAKPEDVMETFK- 492

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
           M+  K C P+ +T+  +I  L    ++ EAL+LL ++   RG  P  V++  V+ G    
Sbjct: 493 MIMEKGCLPNIITYNILIESLCKARKVTEALDLLEEIR-NRGLIPDPVSFGTVISGFCNN 551

Query: 365 RRVEEAKEVFNCM-LGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
             ++EA ++F  M     +     TY I+I+   E   +D A++ + ++       D+Y 
Sbjct: 552 GDLDEAYQLFRRMEQQYRICHTVATYNIMINAFSEKLDMDMAQKLFHEMGDKGCDPDSYT 611

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y  MI G C+ G ++    FL + ++ G  P++  +  VI+  C      EA  I+  M 
Sbjct: 612 YRVMIDGFCKVGNVNSGYDFLLKEIEIGFVPSLTTFGRVINCLCVQHRVHEAVGIVHLMV 671

Query: 484 KNGLNPDAV 492
           + G+ P+AV
Sbjct: 672 RTGVVPEAV 680



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 119/465 (25%), Positives = 217/465 (46%), Gaps = 15/465 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVA-YKVFD------ 53
           M  LC    + E  KL   +   G  PN+ ++   I G CR G ++ A  KV +      
Sbjct: 223 MHILCKKGHLQEGEKLLNKVLKNGVCPNLFTFNIFIQGLCRKGVLEGANSKVVEAENYLH 282

Query: 54  EMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDS 113
           +M + G+ P+  TY+ ++ G  +   ++ A+ ++     +  + +    +   + +L+  
Sbjct: 283 KMVNKGLEPDDFTYNTIIYGYSKVGKIQDASRIL-----KDAKFKGFVPDEFTYCSLIIG 337

Query: 114 LCREGYVNEVFRIAEDMPQGKSVNEEFAC-GHMIDSLCRSGRNHGASRVVYVMRKRGLTP 172
           +C++G ++    + E+   GK +         +I  L + G    A +++  M K G++P
Sbjct: 338 VCQDGDIDHALALFEE-ALGKGLKPSIVLYNTLIKGLSQQGLVLKALQLMNDMSKEGMSP 396

Query: 173 SLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVL 232
            + +YN +++GLCK G    A  LL   I  GYLP   T+  L++G C    ++ A  +L
Sbjct: 397 DIWTYNLVINGLCKMGCVSDANNLLNAAIAKGYLPDIFTFNTLIDGYCKRLKMDNAIGIL 456

Query: 233 QFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKM 292
             M S          N  L  LC    P +++     +++  C P++IT N +I   CK 
Sbjct: 457 DSMWSHGVTPDVITYNSILNGLCKAAKPEDVMETFKMIMEKGCLPNIITYNILIESLCKA 516

Query: 293 GRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIV 352
            ++ EAL +L + +  +   PD V+F T+I G  N G + EA  L  ++  Q      + 
Sbjct: 517 RKVTEALDLLEE-IRNRGLIPDPVSFGTVISGFCNNGDLDEAYQLFRRMEQQYRICHTVA 575

Query: 353 TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI 412
           TYN ++        ++ A+++F+ M   G   DS TY ++IDG C+   ++    F    
Sbjct: 576 TYNIMINAFSEKLDMDMAQKLFHEMGDKGCDPDSYTYRVMIDGFCKVGNVNSGYDFLLKE 635

Query: 413 VWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIV 457
           +    +     +  +I  LC   ++HEAV  ++ +V +GV P  V
Sbjct: 636 IEIGFVPSLTTFGRVINCLCVQHRVHEAVGIVHLMVRTGVVPEAV 680



 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 120/467 (25%), Positives = 218/467 (46%), Gaps = 37/467 (7%)

Query: 32  YTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLW 91
           Y + +  Y R G++  A  VF+ M      P+  +Y+ ++  ++      +A+    K++
Sbjct: 79  YVSAMRNYGRKGKVQEAVDVFERMDFYNCEPSIFSYNAIMNILVEYGYFNQAH----KVY 134

Query: 92  ERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP-QGKSVNEEFACGHMIDSLC 150
            RMK E  ++ +   F   + S CR        R+  +MP QG  +N    C  +I    
Sbjct: 135 LRMKHE-GIAPDVCTFTIRIKSFCRTKRPLAALRLLNNMPSQGCELNAVVYCT-VISGFY 192

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
                  A  +   M + G+ P + ++N ++H LCK G      +LL + ++ G  P+  
Sbjct: 193 EENYQVEAYELFNKMLRLGIFPHIATFNKLMHILCKKGHLQEGEKLLNKVLKNGVCPNLF 252

Query: 211 TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM 270
           T+ + ++GLC +  LE A   +                             E  N L  M
Sbjct: 253 TFNIFIQGLCRKGVLEGANSKV----------------------------VEAENYLHKM 284

Query: 271 LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR 330
           +    +PD  T NT+I G+ K+G+I++A ++L D     F  PD  T+ ++I G+   G 
Sbjct: 285 VNKGLEPDDFTYNTIIYGYSKVGKIQDASRILKDAKFKGF-VPDEFTYCSLIIGVCQDGD 343

Query: 331 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYA 390
           I  AL L  + +  +G  P IV YN +++GL +   V +A ++ N M   G+  D  TY 
Sbjct: 344 IDHALALFEEAL-GKGLKPSIVLYNTLIKGLSQQGLVLKALQLMNDMSKEGMSPDIWTYN 402

Query: 391 IVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 450
           +VI+GLC+   + +A    +  +    + D + +  +I G C+  K+  A+  L  +   
Sbjct: 403 LVINGLCKMGCVSDANNLLNAAIAKGYLPDIFTFNTLIDGYCKRLKMDNAIGILDSMWSH 462

Query: 451 GVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           GVTP+++ YN +++G CK +   +  +  + + + G  P+ +T+ IL
Sbjct: 463 GVTPDVITYNSILNGLCKAAKPEDVMETFKMIMEKGCLPNIITYNIL 509



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 112/493 (22%), Positives = 217/493 (44%), Gaps = 36/493 (7%)

Query: 8   SRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTY 67
           S+V EA      M ++G  P+  +Y T+I+GY + G++  A ++  + +  G +P+  TY
Sbjct: 272 SKVVEAENYLHKMVNKGLEPDDFTYNTIIYGYSKVGKIQDASRILKDAKFKGFVPDEFTY 331

Query: 68  SVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIA 127
             L+ GV +  D++ A  L  +   +      L  +   +  L+  L ++G V +  ++ 
Sbjct: 332 CSLIIGVCQDGDIDHALALFEEALGK-----GLKPSIVLYNTLIKGLSQQGLVLKALQLM 386

Query: 128 EDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKH 187
            DM +     + +    +I+ LC+ G    A+ ++     +G  P + ++N+++ G CK 
Sbjct: 387 NDMSKEGMSPDIWTYNLVINGLCKMGCVSDANNLLNAAIAKGYLPDIFTFNTLIDGYCKR 446

Query: 188 GGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC 247
                A  +L+     G  P   TY  ++ GLC  +  E   +  + ++ K  +      
Sbjct: 447 LKMDNAIGILDSMWSHGVTPDVITYNSILNGLCKAAKPEDVMETFKMIMEKGCLPNIITY 506

Query: 248 NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA 307
           NI + +LC  +  TE L++L  +      PD ++  TVI+GFC  G ++EA ++   M  
Sbjct: 507 NILIESLCKARKVTEALDLLEEIRNRGLIPDPVSFGTVISGFCNNGDLDEAYQLFRRMEQ 566

Query: 308 GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRV 367
                    T+  +I        +  A  L ++ M  +G  P   TY  ++ G  ++  V
Sbjct: 567 QYRICHTVATYNIMINAFSEKLDMDMAQKLFHE-MGDKGCDPDSYTYRVMIDGFCKVGNV 625

Query: 368 EEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAM 427
               +     + IG V   TT+  VI+ LC  +++ EA                     +
Sbjct: 626 NSGYDFLLKEIEIGFVPSLTTFGRVINCLCVQHRVHEA-------------------VGI 666

Query: 428 IKGLCRSGKIHEAVHFLYELVDSGV-TPNIVCYNVVIDGACKLSMKREAYQIL------R 480
           +  + R+G + EAV  +++     V  P I    +V D   K  +   AY++L      +
Sbjct: 667 VHLMVRTGVVPEAVVTIFDADKKAVAAPKI----IVEDLLKKSHITYYAYELLYDGIRNK 722

Query: 481 EMRKNGLNPDAVT 493
           +++KN  + + +T
Sbjct: 723 KLQKNKASKEVLT 735



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 111/439 (25%), Positives = 211/439 (48%), Gaps = 19/439 (4%)

Query: 6   GLSRVG---EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           G S+VG   +A ++  D K +G VP+  +Y +LI G C+ G++D A  +F+E    G+ P
Sbjct: 302 GYSKVGKIQDASRILKDAKFKGFVPDEFTYCSLIIGVCQDGDIDHALALFEEALGKGLKP 361

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           + + Y+ L++G+ +   V +A  LM  +      +E +S +   +  +++ LC+ G V++
Sbjct: 362 SIVLYNTLIKGLSQQGLVLKALQLMNDM-----SKEGMSPDIWTYNLVINGLCKMGCVSD 416

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
              +         + + F    +ID  C+  +   A  ++  M   G+TP +++YNSI++
Sbjct: 417 ANNLLNAAIAKGYLPDIFTFNTLIDGYCKRLKMDNAIGILDSMWSHGVTPDVITYNSILN 476

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           GLCK        +  +  ++ G LP+  TY +L+E LC    + +A  +L+ + ++  + 
Sbjct: 477 GLCKAAKPEDVMETFKMIMEKGCLPNIITYNILIESLCKARKVTEALDLLEEIRNRGLIP 536

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQ--CQPDVITLNTVINGFCKMGRIEEALK 300
                   +   C   +  E   +   M Q    C   V T N +IN F +   ++ A K
Sbjct: 537 DPVSFGTVISGFCNNGDLDEAYQLFRRMEQQYRICHT-VATYNIMINAFSEKLDMDMAQK 595

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           + ++M   K C PD+ T+  +I G   VG +    + L + + + G+ P + T+  V+  
Sbjct: 596 LFHEM-GDKGCDPDSYTYRVMIDGFCKVGNVNSGYDFLLKEI-EIGFVPSLTTFGRVINC 653

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L    RV EA  + + M+  GVV +    A+V     +   +   K   +D++  S+I  
Sbjct: 654 LCVQHRVHEAVGIVHLMVRTGVVPE----AVVTIFDADKKAVAAPKIIVEDLLKKSHI-T 708

Query: 421 NYVYAAMIKGLCRSGKIHE 439
            Y Y  +  G+ R+ K+ +
Sbjct: 709 YYAYELLYDGI-RNKKLQK 726


>gi|222613080|gb|EEE51212.1| hypothetical protein OsJ_32033 [Oryza sativa Japonica Group]
          Length = 1144

 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 142/515 (27%), Positives = 248/515 (48%), Gaps = 42/515 (8%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           +A+  + +M  RG +PNVV+Y+++I   C+   MD A +V   M   GV+PN  TY+ +V
Sbjct: 217 KAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIV 276

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP 131
            G   +   + A   + K+     E + ++ N+     L+D LC+ G   E  ++ + M 
Sbjct: 277 HGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNS-----LMDYLCKNGRCTEARKMFDSMT 331

Query: 132 ---------------QGKSVNEEFACGH-MIDSLCRSG--RNH----------------- 156
                          QG +        H ++D + R+G   NH                 
Sbjct: 332 KRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVD 391

Query: 157 GASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLV 216
            A  V   MR++GL P  V+Y +++  LCK G    A +  E+ I     P    Y  L+
Sbjct: 392 QAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLI 451

Query: 217 EGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQ 276
             LC     +KA++++  ML +     T   N  + + C      E   +   M++   +
Sbjct: 452 HSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVK 511

Query: 277 PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALN 336
           PD+IT +T+I+G+C  G+++EA K+L  MV+     PD VT+ T+I G   + R+++AL 
Sbjct: 512 PDIITYSTLIDGYCLAGKMDEATKLLASMVSVGM-KPDCVTYNTLINGYCKISRMEDAL- 569

Query: 337 LLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 396
           +L++ M   G SP I+TYN +L+GLF+ RR   AKE++  +   G   + +TY I++ GL
Sbjct: 570 VLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGL 629

Query: 397 CESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNI 456
           C++N  DEA R + ++       +   +  MI  L + G+  EA      L  +G+ P++
Sbjct: 630 CKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDV 689

Query: 457 VCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 491
             Y+++ +   +  +  E   +   M +NG   ++
Sbjct: 690 RTYSLMAENLIEQGLLEELDDLFLSMEENGCTANS 724



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 127/480 (26%), Positives = 237/480 (49%), Gaps = 14/480 (2%)

Query: 23  RGHVPNVVSYTTLIHGYC---RTGE-MDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTR 78
           +G   + +++T L+ G C   RT + MD+   V   M   G +PN  +Y++L++G+    
Sbjct: 120 KGFRVDAIAFTPLLKGLCADKRTSDAMDI---VLRRMTQLGCIPNVFSYNILLKGLCDEN 176

Query: 79  DVERANVLMFKLWERMKEEE-DLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVN 137
             + A     +L + M ++  D   +  ++  +++   +EG +++ +    +M     + 
Sbjct: 177 RSQEA----LELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILP 232

Query: 138 EEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLL 197
                  +I +LC++     A  V+  M K G+ P+  +YNSIVHG C  G    A   L
Sbjct: 233 NVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFL 292

Query: 198 EEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLI 257
           ++    G  P   TY  L++ LC      +ARK+   M  +            L+     
Sbjct: 293 KKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATK 352

Query: 258 KNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVT 317
               E+  +L  M++    P+    + +I  + K G++++A+ V + M       PD VT
Sbjct: 353 GALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGL-NPDTVT 411

Query: 318 FTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCM 377
           + T+I  L   GR+++A+    Q++ +R  SPG + YN+++  L    + ++AKE+   M
Sbjct: 412 YGTVIGILCKSGRVEDAMRYFEQMIDER-LSPGNIVYNSLIHSLCIFDKWDKAKELILEM 470

Query: 378 LGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKI 437
           L  G+  D+  +  +ID  C+  ++ E+++ +D +V      D   Y+ +I G C +GK+
Sbjct: 471 LDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKM 530

Query: 438 HEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            EA   L  +V  G+ P+ V YN +I+G CK+S   +A  + REM  +G++PD +T+ I+
Sbjct: 531 DEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNII 590



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 133/514 (25%), Positives = 245/514 (47%), Gaps = 49/514 (9%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGH--VPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVL 61
           LC  +R  EA +L   M   G    P+VVSYTT+I+G+ + G++D AY  + EM   G+L
Sbjct: 172 LCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGIL 231

Query: 62  PNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVN 121
           PN +TYS ++  + + + +++A  ++  + +       +  N   + ++V   C  G   
Sbjct: 232 PNVVTYSSIIAALCKAQAMDKAMEVLTSMVK-----NGVMPNCRTYNSIVHGYCSSGQPK 286

Query: 122 EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
           E     + M       +      ++D LC++GR   A ++   M KRGL P + +Y +++
Sbjct: 287 EAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLL 346

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
            G    G  +  + LL+  ++ G  P+ + + +L+   C  +   K  KV Q ML     
Sbjct: 347 QGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILI---CAYA---KQGKVDQAML----- 395

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
                                   V   M Q    PD +T  TVI   CK GR+E+A++ 
Sbjct: 396 ------------------------VFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRY 431

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
              M+  +  +P  + + ++I  L    +  +A  L+ +++  RG     + +N+++   
Sbjct: 432 FEQMIDERL-SPGNIVYNSLIHSLCIFDKWDKAKELILEML-DRGICLDTIFFNSIIDSH 489

Query: 362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
            +  RV E++++F+ M+ IGV  D  TY+ +IDG C + ++DEA +    +V      D 
Sbjct: 490 CKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDC 549

Query: 422 YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
             Y  +I G C+  ++ +A+    E+  SGV+P+I+ YN+++ G  +      A ++   
Sbjct: 550 VTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVG 609

Query: 482 MRKNGLNPDAVTWRILDKLHG---NRGNDFGLRI 512
           + ++G   +  T+ I+  LHG   N   D  LR+
Sbjct: 610 ITESGTQLELSTYNII--LHGLCKNNLTDEALRM 641



 Score =  164 bits (415), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 117/463 (25%), Positives = 205/463 (44%), Gaps = 42/463 (9%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           MD LC   R  EA K+F  M  RG  P + +Y TL+ GY   G +   + + D M   G+
Sbjct: 311 MDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGI 370

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN   +S+L+    +   V++A ++  K+      ++ L+ +   +  ++  LC+ G V
Sbjct: 371 HPNHYVFSILICAYAKQGKVDQAMLVFSKM-----RQQGLNPDTVTYGTVIGILCKSGRV 425

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +  R  E M   +          +I SLC   +   A  ++  M  RG+    + +NSI
Sbjct: 426 EDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSI 485

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +   CK G  + + +L +  ++ G  P   TY  L++G C    +++A K+L  M+S   
Sbjct: 486 IDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVS--- 542

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                              +PD +T NT+ING+CK+ R+E+AL 
Sbjct: 543 --------------------------------VGMKPDCVTYNTLINGYCKISRMEDALV 570

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +  +M +    +PD +T+  I+ GL    R   A  L Y  + + G    + TYN +L G
Sbjct: 571 LFREMESSGV-SPDIITYNIILQGLFQTRRTAAAKEL-YVGITESGTQLELSTYNIILHG 628

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L +    +EA  +F  +    +  ++ T+ I+I  L +  + DEAK  +  +     + D
Sbjct: 629 LCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPD 688

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463
              Y+ M + L   G + E       + ++G T N    N ++
Sbjct: 689 VRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIV 731



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 90/328 (27%), Positives = 155/328 (47%), Gaps = 5/328 (1%)

Query: 170 LTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKAR 229
           +TP+L +Y  ++   C  G     +  L   I+ G+      +  L++GLC +     A 
Sbjct: 87  VTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAM 146

Query: 230 K-VLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQT--QCQPDVITLNTVI 286
             VL+ M     +      NI L+ LC      E L +L  M      C PDV++  TVI
Sbjct: 147 DIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVI 206

Query: 287 NGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
           NGF K G +++A    ++M+  +   P+ VT+++II  L     + +A+ +L   M + G
Sbjct: 207 NGFFKEGDLDKAYGTYHEML-DRGILPNVVTYSSIIAALCKAQAMDKAMEVLTS-MVKNG 264

Query: 347 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
             P   TYN+++ G     + +EA      M   GV  D  TY  ++D LC++ +  EA+
Sbjct: 265 VMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEAR 324

Query: 407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466
           + +D +       +   Y  +++G    G + E    L  +V +G+ PN   ++++I   
Sbjct: 325 KMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAY 384

Query: 467 CKLSMKREAYQILREMRKNGLNPDAVTW 494
            K     +A  +  +MR+ GLNPD VT+
Sbjct: 385 AKQGKVDQAMLVFSKMRQQGLNPDTVTY 412



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 120/230 (52%), Gaps = 3/230 (1%)

Query: 278 DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNL 337
           D I    ++ G C   R  +A+ ++   +    C P+  ++  ++ GL +  R QEAL L
Sbjct: 125 DAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALEL 184

Query: 338 LYQVMPQRGYS--PGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG 395
           L Q+MP  G    P +V+Y  V+ G F+   +++A   ++ ML  G++ +  TY+ +I  
Sbjct: 185 L-QMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAA 243

Query: 396 LCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN 455
           LC++  +D+A      +V    + +   Y +++ G C SG+  EA+ FL ++   GV P+
Sbjct: 244 LCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPD 303

Query: 456 IVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
           +V YN ++D  CK     EA ++   M K GL P+  T+  L + +  +G
Sbjct: 304 VVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKG 353



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 110/239 (46%), Gaps = 6/239 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C   ++ EA KL   M S G  P+ V+Y TLI+GYC+   M+ A  +F EM   GV
Sbjct: 521 IDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGV 580

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TY+++++G+ +TR    A  L   + E   + E LS  N     ++  LC+    
Sbjct: 581 SPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLE-LSTYNI----ILHGLCKNNLT 635

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E  R+ +++       E      MI +L + GRN  A  +   +   GL P + +Y+ +
Sbjct: 636 DEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLM 695

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
              L + G       L     + G   +      +V  L    D+ +A   L FM+ +K
Sbjct: 696 AENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRAGTYL-FMIDEK 753


>gi|357449185|ref|XP_003594869.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483917|gb|AES65120.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 545

 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 122/469 (26%), Positives = 238/469 (50%), Gaps = 9/469 (1%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M+  G  P+ ++   L++ + + G +  ++ VF ++   G  P+++T+++L++G+    +
Sbjct: 84  MEFNGIKPDFITCNLLMNCFSQLGHIKFSFSVFAKILKKGYHPDAVTFTILIKGLCLKGE 143

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
           V +A     K+       +   ++  ++  L++ LCR G      ++   +  GK V   
Sbjct: 144 VHKALYFHDKVVA-----QGFQLDQVSYGTLINGLCRVGETKAAVQLLRRV-DGKLVRPN 197

Query: 140 FAC-GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLE 198
                 +IDS+C+    + A  +   M  + ++P +V+Y+S++ G C  G    A  L  
Sbjct: 198 VVMYSTIIDSMCKDKLVNDAFDLYCEMVSKRISPDVVTYSSLISGFCVVGKLKYAVDLFN 257

Query: 199 EGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIK 258
             I     P+ +T+ +L++G C E  + +A+ VL  M+ K         N  +   CL+K
Sbjct: 258 RMISDNINPNVYTFSILIDGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMDGYCLVK 317

Query: 259 NPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTF 318
              +  ++   M Q    PDV + + +INGFCK+  ++EA+K+  +M   +   P+ VT+
Sbjct: 318 QVNKAKSLFNVMAQRGVTPDVWSYSIMINGFCKIKMVDEAMKLFEEMHCKQI-FPNVVTY 376

Query: 319 TTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCML 378
            +++ GL   GR   AL L+ + M  RG    I+TYN++L  + +   V++A  +   + 
Sbjct: 377 NSLVDGLCKSGRTSCALELVDE-MHDRGQPSNIITYNSILDAICKNNHVDKAIVLLTKIK 435

Query: 379 GIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIH 438
             G+  D  TY ++I+GLC+  +LD+A++ ++D++      + Y Y ++I G C  G   
Sbjct: 436 EKGIQPDIFTYTVLINGLCKVGRLDDAQKVFEDLLVKGYSPNIYTYTSLINGFCNKGFFD 495

Query: 439 EAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
           E +  L ++ D+G  PN + Y ++I    +     +A ++LREM   GL
Sbjct: 496 EGLAMLSKMKDNGCIPNAITYEILIHSLFEKDENDKAEKLLREMIARGL 544



 Score =  172 bits (435), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 100/408 (24%), Positives = 210/408 (51%), Gaps = 2/408 (0%)

Query: 90  LWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSL 149
           L+ R+  + +       F  ++ SL +         +++ M       +   C  +++  
Sbjct: 44  LFNRLLHKNNPIPPAIEFGKILGSLLKAKQYQTALSLSQQMEFNGIKPDFITCNLLMNCF 103

Query: 150 CRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSE 209
            + G    +  V   + K+G  P  V++  ++ GLC  G   +A    ++ +  G+   +
Sbjct: 104 SQLGHIKFSFSVFAKILKKGYHPDAVTFTILIKGLCLKGEVHKALYFHDKVVAQGFQLDQ 163

Query: 210 HTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVF 269
            +Y  L+ GLC   + + A ++L+ +  K       + +  + ++C  K   +  ++   
Sbjct: 164 VSYGTLINGLCRVGETKAAVQLLRRVDGKLVRPNVVMYSTIIDSMCKDKLVNDAFDLYCE 223

Query: 270 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG 329
           M+  +  PDV+T +++I+GFC +G+++ A+ + N M++     P+  TF+ +I G    G
Sbjct: 224 MVSKRISPDVVTYSSLISGFCVVGKLKYAVDLFNRMISDNI-NPNVYTFSILIDGFCKEG 282

Query: 330 RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTY 389
           +++EA N+L  VM ++     +VTYN+++ G   +++V +AK +FN M   GV  D  +Y
Sbjct: 283 KVREAKNVL-AVMMKKNVKLDVVTYNSLMDGYCLVKQVNKAKSLFNVMAQRGVTPDVWSY 341

Query: 390 AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449
           +I+I+G C+   +DEA + ++++       +   Y +++ GLC+SG+   A+  + E+ D
Sbjct: 342 SIMINGFCKIKMVDEAMKLFEEMHCKQIFPNVVTYNSLVDGLCKSGRTSCALELVDEMHD 401

Query: 450 SGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            G   NI+ YN ++D  CK +   +A  +L ++++ G+ PD  T+ +L
Sbjct: 402 RGQPSNIITYNSILDAICKNNHVDKAIVLLTKIKEKGIQPDIFTYTVL 449



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 107/381 (28%), Positives = 188/381 (49%), Gaps = 10/381 (2%)

Query: 6   GLSRVGE---AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           GL RVGE   A +L   +  +   PNVV Y+T+I   C+   ++ A+ ++ EM    + P
Sbjct: 172 GLCRVGETKAAVQLLRRVDGKLVRPNVVMYSTIIDSMCKDKLVNDAFDLYCEMVSKRISP 231

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           + +TYS L+ G      ++ A      L+ RM   ++++ N   F+ L+D  C+EG V E
Sbjct: 232 DVVTYSSLISGFCVVGKLKYA----VDLFNRMI-SDNINPNVYTFSILIDGFCKEGKVRE 286

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
              +   M +     +      ++D  C   + + A  +  VM +RG+TP + SY+ +++
Sbjct: 287 AKNVLAVMMKKNVKLDVVTYNSLMDGYCLVKQVNKAKSLFNVMAQRGVTPDVWSYSIMIN 346

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           G CK      A +L EE       P+  TY  LV+GLC       A +++  M  +    
Sbjct: 347 GFCKIKMVDEAMKLFEEMHCKQIFPNVVTYNSLVDGLCKSGRTSCALELVDEMHDRGQPS 406

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
                N  L A+C   +  + + +L  + +   QPD+ T   +ING CK+GR+++A KV 
Sbjct: 407 NIITYNSILDAICKNNHVDKAIVLLTKIKEKGIQPDIFTYTVLINGLCKVGRLDDAQKVF 466

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
            D++   + +P+  T+T++I G  N G   E L +L + M   G  P  +TY  ++  LF
Sbjct: 467 EDLLVKGY-SPNIYTYTSLINGFCNKGFFDEGLAMLSK-MKDNGCIPNAITYEILIHSLF 524

Query: 363 RLRRVEEAKEVFNCMLGIGVV 383
                ++A+++   M+  G++
Sbjct: 525 EKDENDKAEKLLREMIARGLL 545



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 111/412 (26%), Positives = 199/412 (48%), Gaps = 12/412 (2%)

Query: 6   GLSRVGEAHK-LFFDMK--SRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           GL   GE HK L+F  K  ++G   + VSY TLI+G CR GE   A ++   +    V P
Sbjct: 137 GLCLKGEVHKALYFHDKVVAQGFQLDQVSYGTLINGLCRVGETKAAVQLLRRVDGKLVRP 196

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           N + YS ++  + + + V  A    F L+  M  +  +S +   +++L+   C  G +  
Sbjct: 197 NVVMYSTIIDSMCKDKLVNDA----FDLYCEMVSKR-ISPDVVTYSSLISGFCVVGKLKY 251

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
              +   M         +    +ID  C+ G+   A  V+ VM K+ +   +V+YNS++ 
Sbjct: 252 AVDLFNRMISDNINPNVYTFSILIDGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMD 311

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           G C      +A  L     Q G  P   +Y +++ G C    +++A K+ + M  K+   
Sbjct: 312 GYCLVKQVNKAKSLFNVMAQRGVTPDVWSYSIMINGFCKIKMVDEAMKLFEEMHCKQIFP 371

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQP-DVITLNTVINGFCKMGRIEEALKV 301
                N  +  LC     +  L  LV  +  + QP ++IT N++++  CK   +++A+ V
Sbjct: 372 NVVTYNSLVDGLCKSGRTSCALE-LVDEMHDRGQPSNIITYNSILDAICKNNHVDKAI-V 429

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
           L   +  K   PD  T+T +I GL  VGR+ +A   +++ +  +GYSP I TY +++ G 
Sbjct: 430 LLTKIKEKGIQPDIFTYTVLINGLCKVGRLDDAQK-VFEDLLVKGYSPNIYTYTSLINGF 488

Query: 362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413
                 +E   + + M   G + ++ TY I+I  L E ++ D+A++   +++
Sbjct: 489 CNKGFFDEGLAMLSKMKDNGCIPNAITYEILIHSLFEKDENDKAEKLLREMI 540



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 96/347 (27%), Positives = 166/347 (47%), Gaps = 9/347 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D +C    V +A  L+ +M S+   P+VV+Y++LI G+C  G++  A  +F+ M    +
Sbjct: 205 IDSMCKDKLVNDAFDLYCEMVSKRISPDVVTYSSLISGFCVVGKLKYAVDLFNRMISDNI 264

Query: 61  LPNSLTYSVLVRGVLRTRDVERA-NVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGY 119
            PN  T+S+L+ G  +   V  A NVL       MK+   L V    + +L+D  C    
Sbjct: 265 NPNVYTFSILIDGFCKEGKVREAKNVLAV----MMKKNVKLDV--VTYNSLMDGYCLVKQ 318

Query: 120 VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           VN+   +   M Q     + ++   MI+  C+      A ++   M  + + P++V+YNS
Sbjct: 319 VNKAKSLFNVMAQRGVTPDVWSYSIMINGFCKIKMVDEAMKLFEEMHCKQIFPNVVTYNS 378

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           +V GLCK G    A +L++E    G   +  TY  +++ +C  + ++KA  +L  +  K 
Sbjct: 379 LVDGLCKSGRTSCALELVDEMHDRGQPSNIITYNSILDAICKNNHVDKAIVLLTKIKEKG 438

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                    + +  LC +    +   V   +L     P++ T  ++INGFC  G  +E L
Sbjct: 439 IQPDIFTYTVLINGLCKVGRLDDAQKVFEDLLVKGYSPNIYTYTSLINGFCNKGFFDEGL 498

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
            +L+ M     C P+A+T+  +I  L       +A  LL + M  RG
Sbjct: 499 AMLSKM-KDNGCIPNAITYEILIHSLFEKDENDKAEKLLRE-MIARG 543


>gi|18071404|gb|AAL58263.1|AC068923_5 putative membrane-associated protein [Oryza sativa Japonica Group]
          Length = 1219

 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 142/515 (27%), Positives = 248/515 (48%), Gaps = 42/515 (8%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           +A+  + +M  RG +PNVV+Y+++I   C+   MD A +V   M   GV+PN  TY+ +V
Sbjct: 217 KAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIV 276

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP 131
            G   +   + A   + K+     E + ++ N+     L+D LC+ G   E  ++ + M 
Sbjct: 277 HGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNS-----LMDYLCKNGRCTEARKMFDSMT 331

Query: 132 ---------------QGKSVNEEFACGH-MIDSLCRSG--RNH----------------- 156
                          QG +        H ++D + R+G   NH                 
Sbjct: 332 KRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVD 391

Query: 157 GASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLV 216
            A  V   MR++GL P  V+Y +++  LCK G    A +  E+ I     P    Y  L+
Sbjct: 392 QAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLI 451

Query: 217 EGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQ 276
             LC     +KA++++  ML +     T   N  + + C      E   +   M++   +
Sbjct: 452 HSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVK 511

Query: 277 PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALN 336
           PD+IT +T+I+G+C  G+++EA K+L  MV+     PD VT+ T+I G   + R+++AL 
Sbjct: 512 PDIITYSTLIDGYCLAGKMDEATKLLASMVSVGM-KPDCVTYNTLINGYCKISRMEDAL- 569

Query: 337 LLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 396
           +L++ M   G SP I+TYN +L+GLF+ RR   AKE++  +   G   + +TY I++ GL
Sbjct: 570 VLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGL 629

Query: 397 CESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNI 456
           C++N  DEA R + ++       +   +  MI  L + G+  EA      L  +G+ P++
Sbjct: 630 CKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDV 689

Query: 457 VCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 491
             Y+++ +   +  +  E   +   M +NG   ++
Sbjct: 690 RTYSLMAENLIEQGLLEELDDLFLSMEENGCTANS 724



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 127/480 (26%), Positives = 237/480 (49%), Gaps = 14/480 (2%)

Query: 23  RGHVPNVVSYTTLIHGYC---RTGE-MDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTR 78
           +G   + +++T L+ G C   RT + MD+   V   M   G +PN  +Y++L++G+    
Sbjct: 120 KGFRVDAIAFTPLLKGLCADKRTSDAMDI---VLRRMTQLGCIPNVFSYNILLKGLCDEN 176

Query: 79  DVERANVLMFKLWERMKEEE-DLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVN 137
             + A     +L + M ++  D   +  ++  +++   +EG +++ +    +M     + 
Sbjct: 177 RSQEA----LELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILP 232

Query: 138 EEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLL 197
                  +I +LC++     A  V+  M K G+ P+  +YNSIVHG C  G    A   L
Sbjct: 233 NVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFL 292

Query: 198 EEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLI 257
           ++    G  P   TY  L++ LC      +ARK+   M  +            L+     
Sbjct: 293 KKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATK 352

Query: 258 KNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVT 317
               E+  +L  M++    P+    + +I  + K G++++A+ V + M       PD VT
Sbjct: 353 GALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGL-NPDTVT 411

Query: 318 FTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCM 377
           + T+I  L   GR+++A+    Q++ +R  SPG + YN+++  L    + ++AKE+   M
Sbjct: 412 YGTVIGILCKSGRVEDAMRYFEQMIDER-LSPGNIVYNSLIHSLCIFDKWDKAKELILEM 470

Query: 378 LGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKI 437
           L  G+  D+  +  +ID  C+  ++ E+++ +D +V      D   Y+ +I G C +GK+
Sbjct: 471 LDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKM 530

Query: 438 HEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            EA   L  +V  G+ P+ V YN +I+G CK+S   +A  + REM  +G++PD +T+ I+
Sbjct: 531 DEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNII 590



 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 133/514 (25%), Positives = 245/514 (47%), Gaps = 49/514 (9%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGH--VPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVL 61
           LC  +R  EA +L   M   G    P+VVSYTT+I+G+ + G++D AY  + EM   G+L
Sbjct: 172 LCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGIL 231

Query: 62  PNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVN 121
           PN +TYS ++  + + + +++A  ++  + +       +  N   + ++V   C  G   
Sbjct: 232 PNVVTYSSIIAALCKAQAMDKAMEVLTSMVK-----NGVMPNCRTYNSIVHGYCSSGQPK 286

Query: 122 EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
           E     + M       +      ++D LC++GR   A ++   M KRGL P + +Y +++
Sbjct: 287 EAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLL 346

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
            G    G  +  + LL+  ++ G  P+ + + +L+   C  +   K  KV Q ML     
Sbjct: 347 QGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILI---CAYA---KQGKVDQAML----- 395

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
                                   V   M Q    PD +T  TVI   CK GR+E+A++ 
Sbjct: 396 ------------------------VFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRY 431

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
              M+  +  +P  + + ++I  L    +  +A  L+ +++  RG     + +N+++   
Sbjct: 432 FEQMIDERL-SPGNIVYNSLIHSLCIFDKWDKAKELILEML-DRGICLDTIFFNSIIDSH 489

Query: 362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
            +  RV E++++F+ M+ IGV  D  TY+ +IDG C + ++DEA +    +V      D 
Sbjct: 490 CKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDC 549

Query: 422 YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
             Y  +I G C+  ++ +A+    E+  SGV+P+I+ YN+++ G  +      A ++   
Sbjct: 550 VTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVG 609

Query: 482 MRKNGLNPDAVTWRILDKLHG---NRGNDFGLRI 512
           + ++G   +  T+ I+  LHG   N   D  LR+
Sbjct: 610 ITESGTQLELSTYNII--LHGLCKNNLTDEALRM 641



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 117/463 (25%), Positives = 205/463 (44%), Gaps = 42/463 (9%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           MD LC   R  EA K+F  M  RG  P + +Y TL+ GY   G +   + + D M   G+
Sbjct: 311 MDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGI 370

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN   +S+L+    +   V++A ++  K+      ++ L+ +   +  ++  LC+ G V
Sbjct: 371 HPNHYVFSILICAYAKQGKVDQAMLVFSKM-----RQQGLNPDTVTYGTVIGILCKSGRV 425

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +  R  E M   +          +I SLC   +   A  ++  M  RG+    + +NSI
Sbjct: 426 EDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSI 485

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +   CK G  + + +L +  ++ G  P   TY  L++G C    +++A K+L  M+S   
Sbjct: 486 IDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVS--- 542

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                              +PD +T NT+ING+CK+ R+E+AL 
Sbjct: 543 --------------------------------VGMKPDCVTYNTLINGYCKISRMEDALV 570

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +  +M +    +PD +T+  I+ GL    R   A  L Y  + + G    + TYN +L G
Sbjct: 571 LFREMESSGV-SPDIITYNIILQGLFQTRRTAAAKEL-YVGITESGTQLELSTYNIILHG 628

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L +    +EA  +F  +    +  ++ T+ I+I  L +  + DEAK  +  +     + D
Sbjct: 629 LCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPD 688

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463
              Y+ M + L   G + E       + ++G T N    N ++
Sbjct: 689 VRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIV 731



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 90/328 (27%), Positives = 155/328 (47%), Gaps = 5/328 (1%)

Query: 170 LTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKAR 229
           +TP+L +Y  ++   C  G     +  L   I+ G+      +  L++GLC +     A 
Sbjct: 87  VTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAM 146

Query: 230 K-VLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQT--QCQPDVITLNTVI 286
             VL+ M     +      NI L+ LC      E L +L  M      C PDV++  TVI
Sbjct: 147 DIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVI 206

Query: 287 NGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
           NGF K G +++A    ++M+  +   P+ VT+++II  L     + +A+ +L   M + G
Sbjct: 207 NGFFKEGDLDKAYGTYHEML-DRGILPNVVTYSSIIAALCKAQAMDKAMEVLTS-MVKNG 264

Query: 347 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
             P   TYN+++ G     + +EA      M   GV  D  TY  ++D LC++ +  EA+
Sbjct: 265 VMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEAR 324

Query: 407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466
           + +D +       +   Y  +++G    G + E    L  +V +G+ PN   ++++I   
Sbjct: 325 KMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAY 384

Query: 467 CKLSMKREAYQILREMRKNGLNPDAVTW 494
            K     +A  +  +MR+ GLNPD VT+
Sbjct: 385 AKQGKVDQAMLVFSKMRQQGLNPDTVTY 412



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 120/230 (52%), Gaps = 3/230 (1%)

Query: 278 DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNL 337
           D I    ++ G C   R  +A+ ++   +    C P+  ++  ++ GL +  R QEAL L
Sbjct: 125 DAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALEL 184

Query: 338 LYQVMPQRGYS--PGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG 395
           L Q+MP  G    P +V+Y  V+ G F+   +++A   ++ ML  G++ +  TY+ +I  
Sbjct: 185 L-QMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAA 243

Query: 396 LCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN 455
           LC++  +D+A      +V    + +   Y +++ G C SG+  EA+ FL ++   GV P+
Sbjct: 244 LCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPD 303

Query: 456 IVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
           +V YN ++D  CK     EA ++   M K GL P+  T+  L + +  +G
Sbjct: 304 VVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKG 353



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 110/239 (46%), Gaps = 6/239 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C   ++ EA KL   M S G  P+ V+Y TLI+GYC+   M+ A  +F EM   GV
Sbjct: 521 IDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGV 580

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TY+++++G+ +TR    A  L   + E   + E LS  N     ++  LC+    
Sbjct: 581 SPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLE-LSTYNI----ILHGLCKNNLT 635

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E  R+ +++       E      MI +L + GRN  A  +   +   GL P + +Y+ +
Sbjct: 636 DEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLM 695

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
              L + G       L     + G   +      +V  L    D+ +A   L FM+ +K
Sbjct: 696 AENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRAGTYL-FMIDEK 753


>gi|46091165|dbj|BAD13711.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 142/515 (27%), Positives = 248/515 (48%), Gaps = 42/515 (8%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           +A+  + +M  RG +PNVV+Y+++I   C+   MD A +V   M   GV+PN  TY+ +V
Sbjct: 217 KAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIV 276

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP 131
            G   +   + A   + K+     E + ++ N+     L+D LC+ G   E  ++ + M 
Sbjct: 277 HGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNS-----LMDYLCKNGRCTEARKMFDSMT 331

Query: 132 ---------------QGKSVNEEFACGH-MIDSLCRSG--RNH----------------- 156
                          QG +        H ++D + R+G   NH                 
Sbjct: 332 KRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVD 391

Query: 157 GASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLV 216
            A  V   MR++GL P  V+Y +++  LCK G    A +  E+ I     P    Y  L+
Sbjct: 392 QAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLI 451

Query: 217 EGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQ 276
             LC     +KA++++  ML +     T   N  + + C      E   +   M++   +
Sbjct: 452 HSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVK 511

Query: 277 PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALN 336
           PD+IT +T+I+G+C  G+++EA K+L  MV+     PD VT+ T+I G   + R+++AL 
Sbjct: 512 PDIITYSTLIDGYCLAGKMDEATKLLASMVSVGM-KPDCVTYNTLINGYCKISRMEDAL- 569

Query: 337 LLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 396
           +L++ M   G SP I+TYN +L+GLF+ RR   AKE++  +   G   + +TY I++ GL
Sbjct: 570 VLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGL 629

Query: 397 CESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNI 456
           C++N  DEA R + ++       +   +  MI  L + G+  EA      L  +G+ P++
Sbjct: 630 CKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDV 689

Query: 457 VCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 491
             Y+++ +   +  +  E   +   M +NG   ++
Sbjct: 690 RTYSLMAENLIEQGLLEELDDLFLSMEENGCTANS 724



 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 129/502 (25%), Positives = 244/502 (48%), Gaps = 14/502 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYC---RTGE-MDVAYKVFDEMR 56
           M   C   R+        ++  +G + + +++T ++ G C   RT + MD+   V   M 
Sbjct: 98  MGSCCCAGRLDLGFAALGNVIKKGFIVDAIAFTPMLKGLCADKRTSDAMDI---VLRRMT 154

Query: 57  HCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEE-DLSVNNAAFANLVDSLC 115
             G +PN  +Y++L++G+      + A     +L + M ++  D   +  ++  +++   
Sbjct: 155 QLGCIPNVFSYNILLKGLCDDNRSQEA----LELLQMMPDDGGDCPPDVVSYTTVINGFF 210

Query: 116 REGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLV 175
           +EG +++ +    +M     +        +I +LC++     A  V+  M K G+ P+  
Sbjct: 211 KEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCR 270

Query: 176 SYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM 235
           +YNSIVHG C  G    A   L++    G  P   TY  L++ LC      +ARK+   M
Sbjct: 271 TYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSM 330

Query: 236 LSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 295
             +            L+         E+  +L  M++    P+    + +I  + K G++
Sbjct: 331 TKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKV 390

Query: 296 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN 355
           ++A+ V + M       PD VT+ T+I  L   GR+++A+    Q++ +R  SPG + YN
Sbjct: 391 DQAMLVFSKMRQQGL-NPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDER-LSPGNIVYN 448

Query: 356 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP 415
           +++  L    + ++AKE+   ML  G+  D+  +  +ID  C+  ++ E+++ +D +V  
Sbjct: 449 SLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRI 508

Query: 416 SNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREA 475
               D   Y+ +I G C +GK+ EA   L  +V  G+ P+ V YN +I+G CK+S   +A
Sbjct: 509 GVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDA 568

Query: 476 YQILREMRKNGLNPDAVTWRIL 497
             + REM  +G++PD +T+ I+
Sbjct: 569 LVLFREMESSGVSPDIITYNII 590



 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 134/514 (26%), Positives = 244/514 (47%), Gaps = 49/514 (9%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGH--VPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVL 61
           LC  +R  EA +L   M   G    P+VVSYTT+I+G+ + G++D AY  + EM   G+L
Sbjct: 172 LCDDNRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGIL 231

Query: 62  PNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVN 121
           PN +TYS ++  + + + +++A  ++  + +       +  N   + ++V   C  G   
Sbjct: 232 PNVVTYSSIIAALCKAQAMDKAMEVLTSMVK-----NGVMPNCRTYNSIVHGYCSSGQPK 286

Query: 122 EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
           E     + M       +      ++D LC++GR   A ++   M KRGL P + +Y +++
Sbjct: 287 EAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLL 346

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
            G    G  +  + LL+  ++ G  P+ + + +L+   C  +   K  KV Q ML     
Sbjct: 347 QGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILI---CAYA---KQGKVDQAML----- 395

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
                                   V   M Q    PD +T  TVI   CK GR+E+A++ 
Sbjct: 396 ------------------------VFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRY 431

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
              M+  +  +P  + + ++I  L    +  +A  L+ + M  RG     + +N+++   
Sbjct: 432 FEQMIDERL-SPGNIVYNSLIHSLCIFDKWDKAKELILE-MLDRGICLDTIFFNSIIDSH 489

Query: 362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
            +  RV E++++F+ M+ IGV  D  TY+ +IDG C + ++DEA +    +V      D 
Sbjct: 490 CKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDC 549

Query: 422 YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
             Y  +I G C+  ++ +A+    E+  SGV+P+I+ YN+++ G  +      A ++   
Sbjct: 550 VTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVG 609

Query: 482 MRKNGLNPDAVTWRILDKLHG---NRGNDFGLRI 512
           + ++G   +  T+ I+  LHG   N   D  LR+
Sbjct: 610 ITESGTQLELSTYNII--LHGLCKNNLTDEALRM 641



 Score =  164 bits (416), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 117/463 (25%), Positives = 205/463 (44%), Gaps = 42/463 (9%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           MD LC   R  EA K+F  M  RG  P + +Y TL+ GY   G +   + + D M   G+
Sbjct: 311 MDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGI 370

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN   +S+L+    +   V++A ++  K+      ++ L+ +   +  ++  LC+ G V
Sbjct: 371 HPNHYVFSILICAYAKQGKVDQAMLVFSKM-----RQQGLNPDTVTYGTVIGILCKSGRV 425

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +  R  E M   +          +I SLC   +   A  ++  M  RG+    + +NSI
Sbjct: 426 EDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSI 485

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +   CK G  + + +L +  ++ G  P   TY  L++G C    +++A K+L  M+S   
Sbjct: 486 IDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVS--- 542

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                              +PD +T NT+ING+CK+ R+E+AL 
Sbjct: 543 --------------------------------VGMKPDCVTYNTLINGYCKISRMEDALV 570

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +  +M +    +PD +T+  I+ GL    R   A  L Y  + + G    + TYN +L G
Sbjct: 571 LFREMESSGV-SPDIITYNIILQGLFQTRRTAAAKEL-YVGITESGTQLELSTYNIILHG 628

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L +    +EA  +F  +    +  ++ T+ I+I  L +  + DEAK  +  +     + D
Sbjct: 629 LCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPD 688

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463
              Y+ M + L   G + E       + ++G T N    N ++
Sbjct: 689 VRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIV 731



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 108/438 (24%), Positives = 197/438 (44%), Gaps = 40/438 (9%)

Query: 98  EDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHG 157
           ++++ N   +  L+ S C  G ++  F    ++ +   + +  A   M+  LC   R   
Sbjct: 85  DEVTPNLCTYGILMGSCCCAGRLDLGFAALGNVIKKGFIVDAIAFTPMLKGLCADKRTSD 144

Query: 158 ASRVV---------------YVMRKRGL-----------------------TPSLVSYNS 179
           A  +V               Y +  +GL                        P +VSY +
Sbjct: 145 AMDIVLRRMTQLGCIPNVFSYNILLKGLCDDNRSQEALELLQMMPDDGGDCPPDVVSYTT 204

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           +++G  K G   +AY    E +  G LP+  TY  ++  LC    ++KA +VL  M+   
Sbjct: 205 VINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNG 264

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
            +   R  N  +   C    P E +  L  M     +PDV+T N++++  CK GR  EA 
Sbjct: 265 VMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEAR 324

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           K+ + M   +   P+  T+ T++ G    G + E   LL  +M + G  P    ++ ++ 
Sbjct: 325 KMFDSMTK-RGLKPEITTYGTLLQGYATKGALVEMHGLL-DLMVRNGIHPNHYVFSILIC 382

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
              +  +V++A  VF+ M   G+  D+ TY  VI  LC+S ++++A R+++ ++      
Sbjct: 383 AYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSP 442

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
            N VY ++I  LC   K  +A   + E++D G+  + + +N +ID  CK     E+ ++ 
Sbjct: 443 GNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLF 502

Query: 480 REMRKNGLNPDAVTWRIL 497
             M + G+ PD +T+  L
Sbjct: 503 DLMVRIGVKPDIITYSTL 520



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 120/230 (52%), Gaps = 3/230 (1%)

Query: 278 DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNL 337
           D I    ++ G C   R  +A+ ++   +    C P+  ++  ++ GL +  R QEAL L
Sbjct: 125 DAIAFTPMLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDDNRSQEALEL 184

Query: 338 LYQVMPQRGYS--PGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG 395
           L Q+MP  G    P +V+Y  V+ G F+   +++A   ++ ML  G++ +  TY+ +I  
Sbjct: 185 L-QMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAA 243

Query: 396 LCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN 455
           LC++  +D+A      +V    + +   Y +++ G C SG+  EA+ FL ++   GV P+
Sbjct: 244 LCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPD 303

Query: 456 IVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
           +V YN ++D  CK     EA ++   M K GL P+  T+  L + +  +G
Sbjct: 304 VVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKG 353



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 110/239 (46%), Gaps = 6/239 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C   ++ EA KL   M S G  P+ V+Y TLI+GYC+   M+ A  +F EM   GV
Sbjct: 521 IDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGV 580

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TY+++++G+ +TR    A  L   + E   + E LS  N     ++  LC+    
Sbjct: 581 SPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLE-LSTYNI----ILHGLCKNNLT 635

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E  R+ +++       E      MI +L + GRN  A  +   +   GL P + +Y+ +
Sbjct: 636 DEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLM 695

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
              L + G       L     + G   +      +V  L    D+ +A   L FM+ +K
Sbjct: 696 AENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRAGTYL-FMIDEK 753



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 74/163 (45%), Gaps = 7/163 (4%)

Query: 338 LYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG---VVADSTTYAIVID 394
           ++  + +RG    I   N  L  + R      A   +N M   G   V  +  TY I++ 
Sbjct: 41  VFDELLRRGRGASIYGLNCALADVAR-HSPAAAVSRYNRMARAGADEVTPNLCTYGILMG 99

Query: 395 GLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF-LYELVDSGVT 453
             C + +LD       +++    I D   +  M+KGLC   +  +A+   L  +   G  
Sbjct: 100 SCCCAGRLDLGFAALGNVIKKGFIVDAIAFTPMLKGLCADKRTSDAMDIVLRRMTQLGCI 159

Query: 454 PNIVCYNVVIDGACKLSMKREAYQILREMRKNGLN--PDAVTW 494
           PN+  YN+++ G C  +  +EA ++L+ M  +G +  PD V++
Sbjct: 160 PNVFSYNILLKGLCDDNRSQEALELLQMMPDDGGDCPPDVVSY 202


>gi|115482730|ref|NP_001064958.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|41152691|dbj|BAD08215.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113639567|dbj|BAF26872.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|215693996|dbj|BAG89195.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 794

 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 142/515 (27%), Positives = 248/515 (48%), Gaps = 42/515 (8%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           +A+  + +M  RG +PNVV+Y+++I   C+   MD A +V   M   GV+PN  TY+ +V
Sbjct: 217 KAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIV 276

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP 131
            G   +   + A   + K+     E + ++ N+     L+D LC+ G   E  ++ + M 
Sbjct: 277 HGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNS-----LMDYLCKNGRCTEARKMFDSMT 331

Query: 132 ---------------QGKSVNEEFACGH-MIDSLCRSG--RNH----------------- 156
                          QG +        H ++D + R+G   NH                 
Sbjct: 332 KRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVD 391

Query: 157 GASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLV 216
            A  V   MR++GL P  V+Y +++  LCK G    A +  E+ I     P    Y  L+
Sbjct: 392 QAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLI 451

Query: 217 EGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQ 276
             LC     +KA++++  ML +     T   N  + + C      E   +   M++   +
Sbjct: 452 HSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVK 511

Query: 277 PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALN 336
           PD+IT +T+I+G+C  G+++EA K+L  MV+     PD VT+ T+I G   + R+++AL 
Sbjct: 512 PDIITYSTLIDGYCLAGKMDEATKLLASMVSVGM-KPDCVTYNTLINGYCKISRMEDAL- 569

Query: 337 LLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 396
           +L++ M   G SP I+TYN +L+GLF+ RR   AKE++  +   G   + +TY I++ GL
Sbjct: 570 VLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGL 629

Query: 397 CESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNI 456
           C++N  DEA R + ++       +   +  MI  L + G+  EA      L  +G+ P++
Sbjct: 630 CKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDV 689

Query: 457 VCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 491
             Y+++ +   +  +  E   +   M +NG   ++
Sbjct: 690 RTYSLMAENLIEQGLLEELDDLFLSMEENGCTANS 724



 Score =  195 bits (495), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 127/480 (26%), Positives = 237/480 (49%), Gaps = 14/480 (2%)

Query: 23  RGHVPNVVSYTTLIHGYC---RTGE-MDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTR 78
           +G   + +++T L+ G C   RT + MD+   V   M   G +PN  +Y++L++G+    
Sbjct: 120 KGFRVDAIAFTPLLKGLCADKRTSDAMDI---VLRRMTQLGCIPNVFSYNILLKGLCDEN 176

Query: 79  DVERANVLMFKLWERMKEEE-DLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVN 137
             + A     +L + M ++  D   +  ++  +++   +EG +++ +    +M     + 
Sbjct: 177 RSQEA----LELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILP 232

Query: 138 EEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLL 197
                  +I +LC++     A  V+  M K G+ P+  +YNSIVHG C  G    A   L
Sbjct: 233 NVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFL 292

Query: 198 EEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLI 257
           ++    G  P   TY  L++ LC      +ARK+   M  +            L+     
Sbjct: 293 KKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATK 352

Query: 258 KNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVT 317
               E+  +L  M++    P+    + +I  + K G++++A+ V + M       PD VT
Sbjct: 353 GALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGL-NPDTVT 411

Query: 318 FTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCM 377
           + T+I  L   GR+++A+    Q++ +R  SPG + YN+++  L    + ++AKE+   M
Sbjct: 412 YGTVIGILCKSGRVEDAMRYFEQMIDER-LSPGNIVYNSLIHSLCIFDKWDKAKELILEM 470

Query: 378 LGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKI 437
           L  G+  D+  +  +ID  C+  ++ E+++ +D +V      D   Y+ +I G C +GK+
Sbjct: 471 LDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKM 530

Query: 438 HEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            EA   L  +V  G+ P+ V YN +I+G CK+S   +A  + REM  +G++PD +T+ I+
Sbjct: 531 DEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNII 590



 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 134/514 (26%), Positives = 244/514 (47%), Gaps = 49/514 (9%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGH--VPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVL 61
           LC  +R  EA +L   M   G    P+VVSYTT+I+G+ + G++D AY  + EM   G+L
Sbjct: 172 LCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGIL 231

Query: 62  PNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVN 121
           PN +TYS ++  + + + +++A  ++  + +       +  N   + ++V   C  G   
Sbjct: 232 PNVVTYSSIIAALCKAQAMDKAMEVLTSMVK-----NGVMPNCRTYNSIVHGYCSSGQPK 286

Query: 122 EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
           E     + M       +      ++D LC++GR   A ++   M KRGL P + +Y +++
Sbjct: 287 EAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLL 346

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
            G    G  +  + LL+  ++ G  P+ + + +L+   C  +   K  KV Q ML     
Sbjct: 347 QGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILI---CAYA---KQGKVDQAML----- 395

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
                                   V   M Q    PD +T  TVI   CK GR+E+A++ 
Sbjct: 396 ------------------------VFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRY 431

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
              M+  +  +P  + + ++I  L    +  +A  L+ + M  RG     + +N+++   
Sbjct: 432 FEQMIDERL-SPGNIVYNSLIHSLCIFDKWDKAKELILE-MLDRGICLDTIFFNSIIDSH 489

Query: 362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
            +  RV E++++F+ M+ IGV  D  TY+ +IDG C + ++DEA +    +V      D 
Sbjct: 490 CKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDC 549

Query: 422 YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
             Y  +I G C+  ++ +A+    E+  SGV+P+I+ YN+++ G  +      A ++   
Sbjct: 550 VTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVG 609

Query: 482 MRKNGLNPDAVTWRILDKLHG---NRGNDFGLRI 512
           + ++G   +  T+ I+  LHG   N   D  LR+
Sbjct: 610 ITESGTQLELSTYNII--LHGLCKNNLTDEALRM 641



 Score =  164 bits (416), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 117/463 (25%), Positives = 205/463 (44%), Gaps = 42/463 (9%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           MD LC   R  EA K+F  M  RG  P + +Y TL+ GY   G +   + + D M   G+
Sbjct: 311 MDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGI 370

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN   +S+L+    +   V++A ++  K+      ++ L+ +   +  ++  LC+ G V
Sbjct: 371 HPNHYVFSILICAYAKQGKVDQAMLVFSKM-----RQQGLNPDTVTYGTVIGILCKSGRV 425

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +  R  E M   +          +I SLC   +   A  ++  M  RG+    + +NSI
Sbjct: 426 EDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSI 485

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +   CK G  + + +L +  ++ G  P   TY  L++G C    +++A K+L  M+S   
Sbjct: 486 IDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVS--- 542

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                              +PD +T NT+ING+CK+ R+E+AL 
Sbjct: 543 --------------------------------VGMKPDCVTYNTLINGYCKISRMEDALV 570

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +  +M +    +PD +T+  I+ GL    R   A  L Y  + + G    + TYN +L G
Sbjct: 571 LFREMESSGV-SPDIITYNIILQGLFQTRRTAAAKEL-YVGITESGTQLELSTYNIILHG 628

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L +    +EA  +F  +    +  ++ T+ I+I  L +  + DEAK  +  +     + D
Sbjct: 629 LCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPD 688

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463
              Y+ M + L   G + E       + ++G T N    N ++
Sbjct: 689 VRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIV 731



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 90/328 (27%), Positives = 155/328 (47%), Gaps = 5/328 (1%)

Query: 170 LTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKAR 229
           +TP+L +Y  ++   C  G     +  L   I+ G+      +  L++GLC +     A 
Sbjct: 87  VTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAM 146

Query: 230 K-VLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQT--QCQPDVITLNTVI 286
             VL+ M     +      NI L+ LC      E L +L  M      C PDV++  TVI
Sbjct: 147 DIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVI 206

Query: 287 NGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
           NGF K G +++A    ++M+  +   P+ VT+++II  L     + +A+ +L   M + G
Sbjct: 207 NGFFKEGDLDKAYGTYHEML-DRGILPNVVTYSSIIAALCKAQAMDKAMEVLTS-MVKNG 264

Query: 347 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
             P   TYN+++ G     + +EA      M   GV  D  TY  ++D LC++ +  EA+
Sbjct: 265 VMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEAR 324

Query: 407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466
           + +D +       +   Y  +++G    G + E    L  +V +G+ PN   ++++I   
Sbjct: 325 KMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAY 384

Query: 467 CKLSMKREAYQILREMRKNGLNPDAVTW 494
            K     +A  +  +MR+ GLNPD VT+
Sbjct: 385 AKQGKVDQAMLVFSKMRQQGLNPDTVTY 412



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 120/230 (52%), Gaps = 3/230 (1%)

Query: 278 DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNL 337
           D I    ++ G C   R  +A+ ++   +    C P+  ++  ++ GL +  R QEAL L
Sbjct: 125 DAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALEL 184

Query: 338 LYQVMPQRGYS--PGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG 395
           L Q+MP  G    P +V+Y  V+ G F+   +++A   ++ ML  G++ +  TY+ +I  
Sbjct: 185 L-QMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAA 243

Query: 396 LCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN 455
           LC++  +D+A      +V    + +   Y +++ G C SG+  EA+ FL ++   GV P+
Sbjct: 244 LCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPD 303

Query: 456 IVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
           +V YN ++D  CK     EA ++   M K GL P+  T+  L + +  +G
Sbjct: 304 VVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKG 353



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 110/239 (46%), Gaps = 6/239 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C   ++ EA KL   M S G  P+ V+Y TLI+GYC+   M+ A  +F EM   GV
Sbjct: 521 IDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGV 580

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TY+++++G+ +TR    A  L   + E   + E LS  N     ++  LC+    
Sbjct: 581 SPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLE-LSTYNI----ILHGLCKNNLT 635

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E  R+ +++       E      MI +L + GRN  A  +   +   GL P + +Y+ +
Sbjct: 636 DEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLM 695

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
              L + G       L     + G   +      +V  L    D+ +A   L FM+ +K
Sbjct: 696 AENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRAGTYL-FMIDEK 753


>gi|356524758|ref|XP_003530995.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17140-like [Glycine max]
          Length = 875

 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 145/513 (28%), Positives = 242/513 (47%), Gaps = 36/513 (7%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           R G    L+ DM +    P   ++  LIH  C +   D A ++F++M   G  PN  T  
Sbjct: 130 RPGFVSWLYSDMLAARVAPQTYTFNLLIHSLCESRAFDHALQLFEKMPQKGCCPNEFTLG 189

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSV-NNAAFANLVDSLCREGYVNEVFRIA 127
           +LVRG+ R   V++A        E +       + N   +  LV   CRE   NE  R+ 
Sbjct: 190 ILVRGLCRAGLVKQA-------LELVNNNNSCRIANRVVYNTLVSRFCREEMNNEAERLV 242

Query: 128 EDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMR---KRGLT-PSLVSYNSIVHG 183
           E M +   + +       I +LCR+G+   ASR+   M+   + GL  P++V++N ++ G
Sbjct: 243 ERMNELGVLPDVVTFNSRISALCRAGKVMEASRIFRDMQMDAELGLPRPNVVTFNLMLKG 302

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CKHG    A  L+E   + G   S   Y + + GL    +L +AR VL  M++K     
Sbjct: 303 FCKHGMMGDARGLVETMKKVGNFDSLECYNIWLMGLLRNGELLEARLVLDEMVAKGIEPN 362

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               NI +  LC     ++   ++  M++    PD +  +T+++G+C  G++ EA  VL+
Sbjct: 363 AYTYNIMMDGLCRNHMLSDARGLMDLMMRNGVYPDTVAYSTLLHGYCSRGKVFEAKSVLH 422

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           +M+    C P+  T  T++  L   GR  EA  +L Q M ++ Y P  VT N V+ GL R
Sbjct: 423 EMIRNG-CQPNTYTCNTLLHSLWKEGRTLEAEEML-QKMNEKCYQPDTVTCNIVVNGLCR 480

Query: 364 LRRVEEAKEVFNCMLGIGVVA----------------------DSTTYAIVIDGLCESNQ 401
              +++A E+ + M   G  +                      D  TY  +I+GLC+  +
Sbjct: 481 NGELDKASEIVSEMWTNGPTSLDKGNSFASLINSIHNVSNCLPDGITYTTLINGLCKVGR 540

Query: 402 LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNV 461
           L+EAK+ + +++  +   D+  Y   I   C+ GKI  A   L ++  +G +  +  YN 
Sbjct: 541 LEEAKKKFIEMLAKNLRPDSVTYDTFIWSFCKQGKISSAFRVLKDMERNGCSKTLQTYNA 600

Query: 462 VIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
           +I G    +   E Y +  EM++ G++PD  T+
Sbjct: 601 LILGLGSNNQIFEIYGLKDEMKEKGISPDICTY 633



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 136/576 (23%), Positives = 253/576 (43%), Gaps = 96/576 (16%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHV----PNVVSYTTLIHGYCRTGEMDVAYKVFDEMR 56
           +  LC   +V EA ++F DM+    +    PNVV++  ++ G+C+ G M  A  + + M+
Sbjct: 261 ISALCRAGKVMEASRIFRDMQMDAELGLPRPNVVTFNLMLKGFCKHGMMGDARGLVETMK 320

Query: 57  HCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCR 116
             G   +   Y++ + G+LR  ++  A +++ ++  +  E      N   +  ++D LCR
Sbjct: 321 KVGNFDSLECYNIWLMGLLRNGELLEARLVLDEMVAKGIEP-----NAYTYNIMMDGLCR 375

Query: 117 EGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVS 176
              +++   + + M +     +  A   ++   C  G+   A  V++ M + G  P+  +
Sbjct: 376 NHMLSDARGLMDLMMRNGVYPDTVAYSTLLHGYCSRGKVFEAKSVLHEMIRNGCQPNTYT 435

Query: 177 YNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFML 236
            N+++H L K G  + A ++L++  +  Y P   T  ++V GLC   +L+KA +++  M 
Sbjct: 436 CNTLLHSLWKEGRTLEAEEMLQKMNEKCYQPDTVTCNIVVNGLCRNGELDKASEIVSEMW 495

Query: 237 SKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIE 296
           +       +  N +   +  I N +             C PD IT  T+ING CK+GR+E
Sbjct: 496 TNGPTSLDK-GNSFASLINSIHNVS------------NCLPDGITYTTLINGLCKVGRLE 542

Query: 297 EALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQV--------------- 341
           EA K   +M+A K   PD+VT+ T I+     G+I  A  +L  +               
Sbjct: 543 EAKKKFIEMLA-KNLRPDSVTYDTFIWSFCKQGKISSAFRVLKDMERNGCSKTLQTYNAL 601

Query: 342 -------------------MPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGV 382
                              M ++G SP I TYN ++  L    + ++A  + + ML  G+
Sbjct: 602 ILGLGSNNQIFEIYGLKDEMKEKGISPDICTYNNIITCLCEGGKAKDAISLLHEMLDKGI 661

Query: 383 VADSTTYAIVIDGLCESN----------------------------------QLDEAKRF 408
             + +++ I+I    +S+                                  QL EAK  
Sbjct: 662 SPNVSSFKILIKAFSKSSDFKVACELFEVALNICGRKEALYSLMFNELLAGGQLSEAKEL 721

Query: 409 WDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACK 468
           ++  +       N++Y  +I  LC+  ++ +A   LY+L+D G   +   +  VIDG  K
Sbjct: 722 FEVSLDRYLTLKNFMYKDLIARLCQDERLADANSLLYKLIDKGYGFDHASFMPVIDGLSK 781

Query: 469 LSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNR 504
              KR+A ++ + M +  L       R +D+ + NR
Sbjct: 782 RGNKRQADELAKRMMELELED-----RPVDRTYSNR 812



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 130/485 (26%), Positives = 219/485 (45%), Gaps = 68/485 (14%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVL----PNSLTY 67
           EA +L   M   G +P+VV++ + I   CR G++  A ++F +M+    L    PN +T+
Sbjct: 237 EAERLVERMNELGVLPDVVTFNSRISALCRAGKVMEASRIFRDMQMDAELGLPRPNVVTF 296

Query: 68  SVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIA 127
           +++++G  +   +  A  L+ +  +++   + L   N     L+    R G + E   + 
Sbjct: 297 NLMLKGFCKHGMMGDARGLV-ETMKKVGNFDSLECYNIWLMGLL----RNGELLEARLVL 351

Query: 128 EDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKH 187
           ++M         +    M+D LCR+     A  ++ +M + G+ P  V+Y++++HG C  
Sbjct: 352 DEMVAKGIEPNAYTYNIMMDGLCRNHMLSDARGLMDLMMRNGVYPDTVAYSTLLHGYCSR 411

Query: 188 GGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC 247
           G    A  +L E I+ G  P+ +T   L+  L  E    +A ++LQ M  K     T  C
Sbjct: 412 GKVFEAKSVLHEMIRNGCQPNTYTCNTLLHSLWKEGRTLEAEEMLQKMNEKCYQPDTVTC 471

Query: 248 NIYLRALC---------------LIKNPTELL--NVLVFMLQ-----TQCQPDVITLNTV 285
           NI +  LC                   PT L   N    ++      + C PD IT  T+
Sbjct: 472 NIVVNGLCRNGELDKASEIVSEMWTNGPTSLDKGNSFASLINSIHNVSNCLPDGITYTTL 531

Query: 286 INGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQR 345
           ING CK+GR+EEA K   +M+A K   PD+VT+ T I+     G+I  A  +L + M + 
Sbjct: 532 INGLCKVGRLEEAKKKFIEMLA-KNLRPDSVTYDTFIWSFCKQGKISSAFRVL-KDMERN 589

Query: 346 GYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA 405
           G S  + TYNA++ GL    ++ E   + + M   G+  D  TY  +I  LCE       
Sbjct: 590 GCSKTLQTYNALILGLGSNNQIFEIYGLKDEMKEKGISPDICTYNNIITCLCE------- 642

Query: 406 KRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDG 465
                                        GK  +A+  L+E++D G++PN+  + ++I  
Sbjct: 643 ----------------------------GGKAKDAISLLHEMLDKGISPNVSSFKILIKA 674

Query: 466 ACKLS 470
             K S
Sbjct: 675 FSKSS 679



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 93/331 (28%), Positives = 164/331 (49%), Gaps = 5/331 (1%)

Query: 170 LTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKAR 229
           + P   ++N ++H LC+      A QL E+  Q G  P+E T  +LV GLC    +++A 
Sbjct: 146 VAPQTYTFNLLIHSLCESRAFDHALQLFEKMPQKGCCPNEFTLGILVRGLCRAGLVKQAL 205

Query: 230 KVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGF 289
           +++    S +  +R  + N  +   C  +   E   ++  M +    PDV+T N+ I+  
Sbjct: 206 ELVNNNNSCRIANRV-VYNTLVSRFCREEMNNEAERLVERMNELGVLPDVVTFNSRISAL 264

Query: 290 CKMGRIEEALKVLNDMVAGK---FCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
           C+ G++ EA ++  DM          P+ VTF  ++ G    G + +A  L+ + M + G
Sbjct: 265 CRAGKVMEASRIFRDMQMDAELGLPRPNVVTFNLMLKGFCKHGMMGDARGLV-ETMKKVG 323

Query: 347 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
               +  YN  L GL R   + EA+ V + M+  G+  ++ TY I++DGLC ++ L +A+
Sbjct: 324 NFDSLECYNIWLMGLLRNGELLEARLVLDEMVAKGIEPNAYTYNIMMDGLCRNHMLSDAR 383

Query: 407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466
              D ++      D   Y+ ++ G C  GK+ EA   L+E++ +G  PN    N ++   
Sbjct: 384 GLMDLMMRNGVYPDTVAYSTLLHGYCSRGKVFEAKSVLHEMIRNGCQPNTYTCNTLLHSL 443

Query: 467 CKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            K     EA ++L++M +    PD VT  I+
Sbjct: 444 WKEGRTLEAEEMLQKMNEKCYQPDTVTCNIV 474



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 89/182 (48%), Gaps = 8/182 (4%)

Query: 317 TFTTIIFGLLNVGRIQEALNLLYQVMPQ-RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN 375
           +  +++  L  +G + +A+     +  Q    SP +  YN +LR   R  R      +++
Sbjct: 80  SLISMVRVLAQLGHVDDAITHFKSLRAQFPSLSPSLPLYNLLLRSTLRHHRPGFVSWLYS 139

Query: 376 CMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG 435
            ML   V   + T+ ++I  LCES   D A + ++ +       + +    +++GLCR+G
Sbjct: 140 DMLAARVAPQTYTFNLLIHSLCESRAFDHALQLFEKMPQKGCCPNEFTLGILVRGLCRAG 199

Query: 436 KIHEAVHFLYELVDSGVT---PNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAV 492
            + +A+    ELV++  +    N V YN ++   C+  M  EA +++  M + G+ PD V
Sbjct: 200 LVKQAL----ELVNNNNSCRIANRVVYNTLVSRFCREEMNNEAERLVERMNELGVLPDVV 255

Query: 493 TW 494
           T+
Sbjct: 256 TF 257


>gi|357118714|ref|XP_003561096.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Brachypodium distachyon]
          Length = 718

 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 133/490 (27%), Positives = 238/490 (48%), Gaps = 46/490 (9%)

Query: 13  AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVF-DEMRHCGVLPNSLTYSVLV 71
           A +L   M   G  PNV +Y  L+   C  G+ + A  V  D+MR  G  PN +TY+ LV
Sbjct: 138 ARRLLASMLRDGVAPNVYTYNILVRALCARGQREEALGVVGDDMRGAGCAPNVVTYNTLV 197

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP 131
               R  +V+ A  L+      +  E  +  +   F  +V+ LC+ G + +  ++ ++M 
Sbjct: 198 AAFCRAGEVDAAERLV-----GVMREGGVRPSLVTFNTVVNGLCKAGRMEDARKMFDEMA 252

Query: 132 QGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCM 191
           +     +  +   ++   C++G  H A  V   M ++G+ P +V++ S++H +C+ G   
Sbjct: 253 REGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGVVPDVVTFTSLIHAMCRAGNLE 312

Query: 192 RAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYL 251
           RA  L+ +  + G   +E T+  L++G C    L+ A      +L+ K++   RI     
Sbjct: 313 RAVALVGQMRERGLRMNEFTFTALIDGFCRNGFLDDA------LLAMKEMRECRI----- 361

Query: 252 RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC 311
                                   QP V+  N +ING+CK+GR++EA +++++M A K  
Sbjct: 362 ------------------------QPSVVCYNVLINGYCKLGRMDEARELIHEMEA-KGM 396

Query: 312 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK 371
            PD VT++TI+ G   +G    A  L  + M ++G  P  +TY++++RGL   RR+ +A 
Sbjct: 397 KPDVVTYSTILSGYCKIGDTDSAFEL-NRKMLKKGVVPDAITYSSLIRGLCEERRLGDAC 455

Query: 372 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 431
           E+F  ML +G+  D  TY  +IDG C+   + +A    D+++    + D   Y+ +I GL
Sbjct: 456 ELFEKMLQLGLQPDEFTYTTLIDGHCKEGNVQKALSLHDEMIKKGVLPDVVTYSVLIDGL 515

Query: 432 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL--NP 489
            +S +  EA   L++L      P+ + Y  ++   C+ +  +    +L+     GL    
Sbjct: 516 SKSARTKEAQRLLFKLYYEDPVPDNIKYEALMH-CCRTAEFKSVVALLKGFSMKGLMNQA 574

Query: 490 DAVTWRILDK 499
           D V   +LD+
Sbjct: 575 DKVYQSMLDR 584



 Score =  195 bits (495), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 135/485 (27%), Positives = 231/485 (47%), Gaps = 44/485 (9%)

Query: 24  GHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERA 83
           G+ P++++Y  ++        +  A ++   M   GV PN  TY++LVR           
Sbjct: 115 GYAPSLLAYNAVLLAL-SDASLPSARRLLASMLRDGVAPNVYTYNILVRA---------- 163

Query: 84  NVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACG 143
                 L  R + EE L                 G V +  R A   P   + N      
Sbjct: 164 ------LCARGQREEAL-----------------GVVGDDMRGAGCAPNVVTYNT----- 195

Query: 144 HMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQF 203
            ++ + CR+G    A R+V VMR+ G+ PSLV++N++V+GLCK G    A ++ +E  + 
Sbjct: 196 -LVAAFCRAGEVDAAERLVGVMREGGVRPSLVTFNTVVNGLCKAGRMEDARKMFDEMARE 254

Query: 204 GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTEL 263
           G  P   +Y  LV G C    L +A  V   M  K  V         + A+C   N    
Sbjct: 255 GLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGVVPDVVTFTSLIHAMCRAGNLERA 314

Query: 264 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF 323
           + ++  M +   + +  T   +I+GFC+ G +++AL  + +M   +   P  V +  +I 
Sbjct: 315 VALVGQMRERGLRMNEFTFTALIDGFCRNGFLDDALLAMKEMRECRI-QPSVVCYNVLIN 373

Query: 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 383
           G   +GR+ EA  L+++ M  +G  P +VTY+ +L G  ++   + A E+   ML  GVV
Sbjct: 374 GYCKLGRMDEARELIHE-MEAKGMKPDVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVV 432

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
            D+ TY+ +I GLCE  +L +A   ++ ++      D + Y  +I G C+ G + +A+  
Sbjct: 433 PDAITYSSLIRGLCEERRLGDACELFEKMLQLGLQPDEFTYTTLIDGHCKEGNVQKALSL 492

Query: 444 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGN 503
             E++  GV P++V Y+V+IDG  K +  +EA ++L ++      PD + +  L  +H  
Sbjct: 493 HDEMIKKGVLPDVVTYSVLIDGLSKSARTKEAQRLLFKLYYEDPVPDNIKYEAL--MHCC 550

Query: 504 RGNDF 508
           R  +F
Sbjct: 551 RTAEF 555



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 134/502 (26%), Positives = 243/502 (48%), Gaps = 22/502 (4%)

Query: 19  DMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTR 78
           DM+  G  PNVV+Y TL+  +CR GE+D A ++   MR  GV P+ +T++ +V G+ +  
Sbjct: 180 DMRGAGCAPNVVTYNTLVAAFCRAGEVDAAERLVGVMREGGVRPSLVTFNTVVNGLCKAG 239

Query: 79  DVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNE 138
            +E A     K+++ M   E L+ +  ++  LV   C+ G ++E   +  +M Q   V +
Sbjct: 240 RMEDAR----KMFDEMA-REGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGVVPD 294

Query: 139 EFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLE 198
                 +I ++CR+G    A  +V  MR+RGL  +  ++ +++ G C++G    A   ++
Sbjct: 295 VVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFLDDALLAMK 354

Query: 199 EGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIK 258
           E  +    PS   Y VL+ G C    +++AR+++  M +K         +  L   C I 
Sbjct: 355 EMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYCKIG 414

Query: 259 NPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTF 318
           +      +   ML+    PD IT +++I G C+  R+ +A ++   M+      PD  T+
Sbjct: 415 DTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDACELFEKMLQLGL-QPDEFTY 473

Query: 319 TTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCML 378
           TT+I G    G +Q+AL+ L+  M ++G  P +VTY+ ++ GL +  R +EA+ +   + 
Sbjct: 474 TTLIDGHCKEGNVQKALS-LHDEMIKKGVLPDVVTYSVLIDGLSKSARTKEAQRLLFKLY 532

Query: 379 GIGVVADSTTY---------------AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
               V D+  Y                 ++ G      +++A + +  ++      D  V
Sbjct: 533 YEDPVPDNIKYEALMHCCRTAEFKSVVALLKGFSMKGLMNQADKVYQSMLDRHWKLDGSV 592

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y+ +I G CR G I +A+ F  +L+  G +PN      ++ G  +  M  EA  +++E+ 
Sbjct: 593 YSVLIHGHCRGGNIMKALSFHKQLLRCGFSPNSTSTISLVRGLFEEGMTVEADNVIQELL 652

Query: 484 KNGLNPDAVTWRILDKLHGNRG 505
                 DA T + L  L+   G
Sbjct: 653 NCCSLADAETSKALIDLNRKEG 674



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 67/234 (28%), Positives = 109/234 (46%), Gaps = 25/234 (10%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R+G+A +LF  M   G  P+  +YTTLI G+C+ G +  A  + DEM   GVLP+
Sbjct: 445 LCEERRLGDACELFEKMLQLGLQPDEFTYTTLIDGHCKEGNVQKALSLHDEMIKKGVLPD 504

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TYSVL+ G+ ++   + A  L+FKL+      ED   +N  +  L+   CR      V
Sbjct: 505 VVTYSVLIDGLSKSARTKEAQRLLFKLY-----YEDPVPDNIKYEALMHC-CRTAEFKSV 558

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             + +       +N+                   A +V   M  R        Y+ ++HG
Sbjct: 559 VALLKGFSMKGLMNQ-------------------ADKVYQSMLDRHWKLDGSVYSVLIHG 599

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
            C+ G  M+A    ++ ++ G+ P+  +   LV GL  E    +A  V+Q +L+
Sbjct: 600 HCRGGNIMKALSFHKQLLRCGFSPNSTSTISLVRGLFEEGMTVEADNVIQELLN 653


>gi|255570715|ref|XP_002526312.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534393|gb|EEF36101.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 729

 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 135/496 (27%), Positives = 244/496 (49%), Gaps = 46/496 (9%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           +A +++  M   G  P V +Y T++H +C+ GE+  A  +  +M+  G  P+ +T++VL+
Sbjct: 220 KALEVYRMMGEYGIRPTVTTYNTMLHSFCKGGEVQRALDLVPKMQERGCYPSEVTFNVLI 279

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP 131
            G+ +  ++++A  L+ ++      +  L V+   +  L+   C++G + E   + E+M 
Sbjct: 280 NGLSKKGELQQAKGLIQEM-----AKAGLRVSPYTYNPLICGYCKKGLLVEALALWEEMV 334

Query: 132 QGKSVNEEFACGHMI-DSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGC 190
             + V+   A  + I    C+ G+   A + +  M K+ L P ++SYN++++G C+ G  
Sbjct: 335 T-RGVSPTVASHNTIMYGFCKEGKMSDARQQLSDMLKKNLMPDIISYNTLIYGFCRLGNI 393

Query: 191 MRAYQLLEEGIQFGYLPSEH-TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNI 249
             A+ LL+E ++F  L     TY  L++GLC   DLE A K+      K+D         
Sbjct: 394 GEAFILLDE-LRFRNLSFNIVTYNTLIDGLCRLGDLETALKL------KED--------- 437

Query: 250 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK 309
                               M+     PDV+T   ++NG CK+G +  A +  ++M+   
Sbjct: 438 --------------------MINRGIHPDVVTYTVLVNGACKLGNMLMAKEFFDEMLHVG 477

Query: 310 FCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEE 369
             APD   +T  I G L +G   +A  L  + M  +G+ P ++TYN  + GL +L  +EE
Sbjct: 478 L-APDQFAYTARIVGELKLGDTAKAFKL-QEEMLTKGFPPDVITYNVFVNGLCKLGNLEE 535

Query: 370 AKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIK 429
           A E+   M+  G V D  TY   +    E+  L E +  + D++          Y  +I 
Sbjct: 536 AGELLQKMIRDGHVPDHVTYTSFMHAHMENGHLREGREIFYDMLSRGQTPTVVTYTVLIH 595

Query: 430 GLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNP 489
               +G++  A+ +  E+ + GV PN++ YNV+I+G CK+    +A +   EM++ G+ P
Sbjct: 596 AHALNGRLDWAMAYFLEMQEKGVVPNVITYNVLINGFCKVRKMDQACKFFIEMQEKGIFP 655

Query: 490 DAVTWRILDKLHGNRG 505
           +  T+ IL   + N G
Sbjct: 656 NKYTYTILINENCNMG 671



 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 116/390 (29%), Positives = 201/390 (51%), Gaps = 3/390 (0%)

Query: 118 GYVN-EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVS 176
           GY+N +   + E M + + + +   C  ++  L        A  V  +M + G+ P++ +
Sbjct: 180 GYLNYQCLLVFEKMMRNRFLPDVKNCNRILKILRDKNLLVKALEVYRMMGEYGIRPTVTT 239

Query: 177 YNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFML 236
           YN+++H  CK G   RA  L+ +  + G  PSE T+ VL+ GL  + +L++A+ ++Q M 
Sbjct: 240 YNTMLHSFCKGGEVQRALDLVPKMQERGCYPSEVTFNVLINGLSKKGELQQAKGLIQEMA 299

Query: 237 SKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIE 296
                      N  +   C      E L +   M+     P V + NT++ GFCK G++ 
Sbjct: 300 KAGLRVSPYTYNPLICGYCKKGLLVEALALWEEMVTRGVSPTVASHNTIMYGFCKEGKMS 359

Query: 297 EALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
           +A + L+DM+  K   PD +++ T+I+G   +G I EA  LL + +  R  S  IVTYN 
Sbjct: 360 DARQQLSDMLK-KNLMPDIISYNTLIYGFCRLGNIGEAFILLDE-LRFRNLSFNIVTYNT 417

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416
           ++ GL RL  +E A ++   M+  G+  D  TY ++++G C+   +  AK F+D+++   
Sbjct: 418 LIDGLCRLGDLETALKLKEDMINRGIHPDVVTYTVLVNGACKLGNMLMAKEFFDEMLHVG 477

Query: 417 NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAY 476
              D + Y A I G  + G   +A     E++  G  P+++ YNV ++G CKL    EA 
Sbjct: 478 LAPDQFAYTARIVGELKLGDTAKAFKLQEEMLTKGFPPDVITYNVFVNGLCKLGNLEEAG 537

Query: 477 QILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           ++L++M ++G  PD VT+      H   G+
Sbjct: 538 ELLQKMIRDGHVPDHVTYTSFMHAHMENGH 567



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 106/388 (27%), Positives = 188/388 (48%), Gaps = 7/388 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M   C   ++ +A +   DM  +  +P+++SY TLI+G+CR G +  A+ + DE+R   +
Sbjct: 349 MYGFCKEGKMSDARQQLSDMLKKNLMPDIISYNTLIYGFCRLGNIGEAFILLDELRFRNL 408

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             N +TY+ L+ G+ R  D+E A     KL E M     +  +   +  LV+  C+ G +
Sbjct: 409 SFNIVTYNTLIDGLCRLGDLETA----LKLKEDMI-NRGIHPDVVTYTVLVNGACKLGNM 463

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                  ++M       ++FA    I    + G    A ++   M  +G  P +++YN  
Sbjct: 464 LMAKEFFDEMLHVGLAPDQFAYTARIVGELKLGDTAKAFKLQEEMLTKGFPPDVITYNVF 523

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           V+GLCK G    A +LL++ I+ G++P   TY   +        L + R++   MLS+  
Sbjct: 524 VNGLCKLGNLEEAGELLQKMIRDGHVPDHVTYTSFMHAHMENGHLREGREIFYDMLSRGQ 583

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                   + + A  L       +   + M +    P+VIT N +INGFCK+ ++++A K
Sbjct: 584 TPTVVTYTVLIHAHALNGRLDWAMAYFLEMQEKGVVPNVITYNVLINGFCKVRKMDQACK 643

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
              +M   K   P+  T+T +I    N+G+ QEAL L  Q++ +R   P   T+ A+L+ 
Sbjct: 644 FFIEM-QEKGIFPNKYTYTILINENCNMGKWQEALRLYAQMLGKR-IRPDSCTHGALLKK 701

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTT 388
           L +  +V+  + + + +L      D+ T
Sbjct: 702 LDKDYKVQAVQFIESLILDGDRTIDANT 729


>gi|357518651|ref|XP_003629614.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523636|gb|AET04090.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 592

 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 137/508 (26%), Positives = 234/508 (46%), Gaps = 43/508 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC L  V     +   M   G  P+VV++T LI+G C  G++  A ++ D +   G 
Sbjct: 118 INSLCHLKLVAFGFSVLGTMLKLGLEPSVVTFTILINGLCVKGDVGRAVELVDHVEKTGY 177

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             +  TY VL+ G+ +      A       W R  EE + + N   ++ ++D LC++G V
Sbjct: 178 RSDVKTYGVLINGLCKMGKTSEA-----VGWLRKMEERNWNPNVVVYSTVMDGLCKDGLV 232

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E                          LC              M  +G+ P+LV+Y  +
Sbjct: 233 SEAL-----------------------GLCLE------------MSGKGIKPNLVTYTCL 257

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GLC  G    A  LL+E ++ G +P   +  +LV+ LC E  + +A+ V+ FM+   +
Sbjct: 258 IQGLCNFGRWKEAGSLLDEMMKMGVMPDLQSLNILVDVLCKEGKIMQAKSVIGFMILVGE 317

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           V      N  +   CL     E   V   M+   C PD++   ++I+G+CK+  I +A+ 
Sbjct: 318 VPDVFTYNSLIDRYCLQNQMDEATRVFELMVSRGCLPDIVAYTSLIHGWCKIKNINKAMH 377

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +L++M+   F  PD VT+TT+I G   VGR   A  L    M + G  P + T   +L G
Sbjct: 378 LLDEMIKVGF-TPDVVTWTTLIGGFCQVGRPLAAKELFLN-MHKYGQVPNLQTCAIILDG 435

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L + + + EA  +F+ M    +  +   Y+I++DG+C + +L+ A   +  +       +
Sbjct: 436 LCKSQLLSEALSLFHAMEKSNLDLNIVIYSIILDGMCSAGKLNTALELFSCLPAKGLQIN 495

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
            Y Y  MI G  + G + +A   L  + ++G  P+   YNV + G         + + L 
Sbjct: 496 VYAYTIMINGFAKQGLLDKAEDLLSNMEENGCMPDSCTYNVFVQGLVAEREIARSIKYLT 555

Query: 481 EMRKNGLNPDAVTWR-ILDKLHGNRGND 507
            MR  G + DA T   I++ L  N+G++
Sbjct: 556 MMRDKGFSVDATTTEMIINYLSTNQGDN 583



 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 112/408 (27%), Positives = 195/408 (47%), Gaps = 7/408 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC + +  EA      M+ R   PNVV Y+T++ G C+ G +  A  +  EM   G+
Sbjct: 188 INGLCKMGKTSEAVGWLRKMEERNWNPNVVVYSTVMDGLCKDGLVSEALGLCLEMSGKGI 247

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +TY+ L++G+      + A  L+ ++  +M    DL   N     LVD LC+EG +
Sbjct: 248 KPNLVTYTCLIQGLCNFGRWKEAGSLLDEMM-KMGVMPDLQSLNI----LVDVLCKEGKI 302

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +   +   M     V + F    +ID  C   +   A+RV  +M  RG  P +V+Y S+
Sbjct: 303 MQAKSVIGFMILVGEVPDVFTYNSLIDRYCLQNQMDEATRVFELMVSRGCLPDIVAYTSL 362

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +HG CK     +A  LL+E I+ G+ P   T+  L+ G C       A+++   M     
Sbjct: 363 IHGWCKIKNINKAMHLLDEMIKVGFTPDVVTWTTLIGGFCQVGRPLAAKELFLNMHKYGQ 422

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           V   + C I L  LC  +  +E L++   M ++    +++  + +++G C  G++  AL+
Sbjct: 423 VPNLQTCAIILDGLCKSQLLSEALSLFHAMEKSNLDLNIVIYSIILDGMCSAGKLNTALE 482

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           + + + A K    +   +T +I G    G + +A +LL   M + G  P   TYN  ++G
Sbjct: 483 LFSCLPA-KGLQINVYAYTIMINGFAKQGLLDKAEDLLSN-MEENGCMPDSCTYNVFVQG 540

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRF 408
           L   R +  + +    M   G   D+TT  ++I+ L  +   +E + F
Sbjct: 541 LVAEREIARSIKYLTMMRDKGFSVDATTTEMIINYLSTNQGDNELREF 588



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 72/262 (27%), Positives = 124/262 (47%), Gaps = 11/262 (4%)

Query: 242 DRTRICNIYLRALCL---IKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
           ++T+  N ++R  C    +K+  E LN    M +    P VI    ++    KM     A
Sbjct: 36  NKTQFLN-FMRNQCKSGKLKSIDEALNFFHTMAKMNPLPSVIDFTLLLGFIVKMKHYTTA 94

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
           + ++ +M +     PD      +I  L ++  +    ++L   M + G  P +VT+  ++
Sbjct: 95  ISLVKEMHSSLGIKPDTFILNVVINSLCHLKLVAFGFSVL-GTMLKLGLEPSVVTFTILI 153

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK---RFWDDIVWP 415
            GL     V  A E+ + +   G  +D  TY ++I+GLC+  +  EA    R  ++  W 
Sbjct: 154 NGLCVKGDVGRAVELVDHVEKTGYRSDVKTYGVLINGLCKMGKTSEAVGWLRKMEERNWN 213

Query: 416 SNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREA 475
            N+    VY+ ++ GLC+ G + EA+    E+   G+ PN+V Y  +I G C     +EA
Sbjct: 214 PNV---VVYSTVMDGLCKDGLVSEALGLCLEMSGKGIKPNLVTYTCLIQGLCNFGRWKEA 270

Query: 476 YQILREMRKNGLNPDAVTWRIL 497
             +L EM K G+ PD  +  IL
Sbjct: 271 GSLLDEMMKMGVMPDLQSLNIL 292


>gi|242036829|ref|XP_002465809.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
 gi|241919663|gb|EER92807.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
          Length = 649

 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 133/495 (26%), Positives = 229/495 (46%), Gaps = 45/495 (9%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           EA++L     S     N  +   ++H YC++ E D A  V  EM    V P+ +T++VL+
Sbjct: 143 EAYRLVLSSDSE---VNAYTLNIMVHSYCKSLEFDKADTVISEMEKRCVFPDVVTHNVLI 199

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP 131
               R  DV+ A  L+  +  +      L      F +++  LC+    ++   +   M 
Sbjct: 200 DARFRAGDVDAAIALVDSMANK-----GLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMD 254

Query: 132 QGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCM 191
           Q     +  +   +I   CR G    A +    M++RG+TP +VS++ ++      G   
Sbjct: 255 QCSVAPDVRSFNILIGGFCRVGEVEEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMD 314

Query: 192 RAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYL 251
            A   L E    G +P    Y +++ G C    +                          
Sbjct: 315 HAAAYLREMKGLGLVPDGVIYTMVIGGFCRAGSM-------------------------- 348

Query: 252 RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC 311
                    +E L V   M+   C PDV+T NT++NG CK  R+ +A ++LN+M   +  
Sbjct: 349 ---------SEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEELLNEM-KERGV 398

Query: 312 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK 371
            PD  TFTT+I G    G  ++AL L   ++ QR   P +V YN+++ G+ R   + +A 
Sbjct: 399 TPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQR-LRPDVVAYNSLIDGMCRKGDLAKAN 457

Query: 372 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 431
           E+++ M    +  +  TY+I+ID  CE  Q++EA  F D++V   N+ +   Y ++IKG 
Sbjct: 458 ELWDDMHAREIFPNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIMTYNSIIKGY 517

Query: 432 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 491
           CRSG + +   FL +++   + P+++ +N +I G  K      A+ +   M K  + PDA
Sbjct: 518 CRSGNVKKGQQFLQKMMQDNILPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVQPDA 577

Query: 492 VTWRILDKLHGNRGN 506
           VT+ ++      +GN
Sbjct: 578 VTYNMIINGFSEQGN 592



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 121/490 (24%), Positives = 230/490 (46%), Gaps = 15/490 (3%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C      +A  +  +M+ R   P+VV++  LI    R G++D A  + D M + G+ P  
Sbjct: 168 CKSLEFDKADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIALVDSMANKGLKPGI 227

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           +T++ +++G+ + R  ++A  +      R  ++  ++ +  +F  L+   CR G V E  
Sbjct: 228 VTFNSVLKGLCKHRRFDKAKEVF-----RAMDQCSVAPDVRSFNILIGGFCRVGEVEEAM 282

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
           +  ++M Q     +  +   +I      G+   A+  +  M+  GL P  V Y  ++ G 
Sbjct: 283 KFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKGLGLVPDGVIYTMVIGGF 342

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
           C+ G    A ++ +E +  G LP   TY  L+ GLC +  L  A ++L  M  +      
Sbjct: 343 CRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEELLNEMKERGVTPDL 402

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
                 +   C   N  + L +   +L  + +PDV+  N++I+G C+ G + +A ++ +D
Sbjct: 403 CTFTTLIHGYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSLIDGMCRKGDLAKANELWDD 462

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
           M A +   P+ VT++ +I      G+++EA   L + M  +G  P I+TYN++++G  R 
Sbjct: 463 MHAREIF-PNHVTYSILIDSHCEKGQVEEAFGFLDE-MVSKGNLPNIMTYNSIIKGYCRS 520

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD----DIVWPSNIHD 420
             V++ ++    M+   ++ D  T+  +I G  +   +  A   ++    ++V P    D
Sbjct: 521 GNVKKGQQFLQKMMQDNILPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVQP----D 576

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              Y  +I G    G + EA     ++  SG+ P+   Y  +I+G       +EA+Q+  
Sbjct: 577 AVTYNMIINGFSEQGNMEEAGRVFKKMGASGIEPDRYTYMSLINGHVTAGNSKEAFQLHD 636

Query: 481 EMRKNGLNPD 490
           EM   G  PD
Sbjct: 637 EMMHRGFAPD 646



 Score =  174 bits (442), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 109/411 (26%), Positives = 202/411 (49%), Gaps = 9/411 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R  +A ++F  M      P+V S+  LI G+CR GE++ A K + EM+  GV P+
Sbjct: 237 LCKHRRFDKAKEVFRAMDQCSVAPDVRSFNILIGGFCRVGEVEEAMKFYKEMQQRGVTPD 296

Query: 64  SLTYSVLVRGVLRTR-DVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
            +++S L+ G+  TR  ++ A   +     R  +   L  +   +  ++   CR G ++E
Sbjct: 297 VVSFSCLI-GLFSTRGKMDHAAAYL-----REMKGLGLVPDGVIYTMVIGGFCRAGSMSE 350

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
             R+ ++M     + +      +++ LC+  R   A  ++  M++RG+TP L ++ +++H
Sbjct: 351 ALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEELLNEMKERGVTPDLCTFTTLIH 410

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           G C+ G   +A QL +  +     P    Y  L++G+C + DL KA ++   M +++   
Sbjct: 411 GYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSLIDGMCRKGDLAKANELWDDMHAREIFP 470

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
                +I + + C      E    L  M+     P+++T N++I G+C+ G +++  + L
Sbjct: 471 NHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIMTYNSIIKGYCRSGNVKKGQQFL 530

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
             M+      PD +TF T+I G +    +  A N+ + +M +    P  VTYN ++ G  
Sbjct: 531 QKMMQDNIL-PDLITFNTLIHGYIKEENMHGAFNV-FNIMEKEMVQPDAVTYNMIINGFS 588

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413
               +EEA  VF  M   G+  D  TY  +I+G   +    EA +  D+++
Sbjct: 589 EQGNMEEAGRVFKKMGASGIEPDRYTYMSLINGHVTAGNSKEAFQLHDEMM 639



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 86/314 (27%), Positives = 146/314 (46%), Gaps = 41/314 (13%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   R+ +A +L  +MK RG  P++ ++TTLIHGYCR G  + A ++FD + H  +
Sbjct: 374 LNGLCKQHRLLDAEELLNEMKERGVTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQRL 433

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ + Y+ L+ G+ R  D+ +AN    +LW+ M   E +  N+  ++ L+DS C +G V
Sbjct: 434 RPDVVAYNSLIDGMCRKGDLAKAN----ELWDDMHARE-IFPNHVTYSILIDSHCEKGQV 488

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E F   ++M                                     +G  P++++YNSI
Sbjct: 489 EEAFGFLDEMVS-----------------------------------KGNLPNIMTYNSI 513

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G C+ G   +  Q L++ +Q   LP   T+  L+ G   E ++  A  V   M  +  
Sbjct: 514 IKGYCRSGNVKKGQQFLQKMMQDNILPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMV 573

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                  N+ +       N  E   V   M  +  +PD  T  ++ING    G  +EA +
Sbjct: 574 QPDAVTYNMIINGFSEQGNMEEAGRVFKKMGASGIEPDRYTYMSLINGHVTAGNSKEAFQ 633

Query: 301 VLNDMVAGKFCAPD 314
           + ++M+   F APD
Sbjct: 634 LHDEMMHRGF-APD 646


>gi|357517409|ref|XP_003628993.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523015|gb|AET03469.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 819

 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 150/543 (27%), Positives = 261/543 (48%), Gaps = 48/543 (8%)

Query: 4   LCGLSRVGEAHKLF--FDMKSRGHV-PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +  L +  E HK F  FD   RG V  +V +Y T I+ YC+ G++D A  +F +M   GV
Sbjct: 213 MSSLVKSNELHKSFRVFDAMCRGGVLIDVYTYATAINAYCKGGKIDEAVGLFLKMGEGGV 272

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           LPN +TY+ L+ G+ ++  +E A  LMFK   RM E + ++ +   +  LV+ L +    
Sbjct: 273 LPNVVTYNNLIDGLCKSGRLEEA--LMFK--GRMVENK-VNPSLVTYGILVNGLVKFEKF 327

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E   +  +M        EF    +ID   R G    A RV   M  +GL P+ V++N++
Sbjct: 328 DEANSVLVEMYSKGFSPNEFVFNALIDGYSRKGNMDDALRVRDDMTLKGLKPNAVTHNTL 387

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G C+     +A Q+LE  +      +E     ++  LC  S  + A K+++ +L +  
Sbjct: 388 LQGFCRTNQMEQAEQVLEYLLSNVLSVNEDACSYVLHLLCKSSKFDSALKIVKALLLRNI 447

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQ--CQPDVITLNTVINGFCKMGRIEEA 298
                +  + +  LC      E ++ L F L  +     +  T N ++ G C+ G +EE 
Sbjct: 448 KVNDSLLTLLVCGLCKCGKHLEAID-LWFRLADKKGLAANTTTSNALLYGLCERGNMEEV 506

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
             V  +MV  +    D +++ T+IFG    G+I+EA  L  ++M Q G+ P   TYN ++
Sbjct: 507 FPVCKEMVE-RGLVLDGISYNTLIFGCCKSGKIEEAFKLKEKMMKQ-GFKPDTYTYNFLM 564

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVW---- 414
           +GL    ++++   V +     GVV +  TYA++++G C ++++D A   ++ +V+    
Sbjct: 565 KGLADKGKMDDVGRVLHEAKDHGVVPNIYTYALMLEGYCNADRIDNAVSLFNKLVYNKVE 624

Query: 415 ------------------------------PSNIHDN-YVYAAMIKGLCRSGKIHEAVHF 443
                                          SNIH   + Y+++I G+C +  + EA   
Sbjct: 625 LSYVVYNILIAAHSKAGNFTEAFKLRDAMRSSNIHPTIFTYSSIIHGMCCNDLVEEAKGI 684

Query: 444 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGN 503
             E+ + G+ PN+ CY  +I G CKL    +   IL+EM  N + P+ +T+ I+   +  
Sbjct: 685 FEEMRNEGLMPNVFCYTALIGGYCKLGQMDQIESILQEMTSNCIQPNKITYTIMIDGYCK 744

Query: 504 RGN 506
            GN
Sbjct: 745 MGN 747



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 131/508 (25%), Positives = 236/508 (46%), Gaps = 24/508 (4%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ L    +  EA+ +  +M S+G  PN   +  LI GY R G MD A +V D+M   G+
Sbjct: 318 VNGLVKFEKFDEANSVLVEMYSKGFSPNEFVFNALIDGYSRKGNMDDALRVRDDMTLKGL 377

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN++T++ L++G  RT  +E+A  ++  L   +     LSVN  A + ++  LC+    
Sbjct: 378 KPNAVTHNTLLQGFCRTNQMEQAEQVLEYLLSNV-----LSVNEDACSYVLHLLCKSSKF 432

Query: 121 NEVFRIAE-----DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVY-VMRKRGLTPSL 174
           +   +I +     ++    S+     CG     LC+ G++  A  + + +  K+GL  + 
Sbjct: 433 DSALKIVKALLLRNIKVNDSLLTLLVCG-----LCKCGKHLEAIDLWFRLADKKGLAANT 487

Query: 175 VSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQF 234
            + N++++GLC+ G     + + +E ++ G +    +Y  L+ G C    +E+A K+ + 
Sbjct: 488 TTSNALLYGLCERGNMEEVFPVCKEMVERGLVLDGISYNTLIFGCCKSGKIEEAFKLKEK 547

Query: 235 MLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGR 294
           M+ +     T   N  ++ L       ++  VL         P++ T   ++ G+C   R
Sbjct: 548 MMKQGFKPDTYTYNFLMKGLADKGKMDDVGRVLHEAKDHGVVPNIYTYALMLEGYCNADR 607

Query: 295 IEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTY 354
           I+ A+ + N +V  K      V +  +I      G   EA  L    M      P I TY
Sbjct: 608 IDNAVSLFNKLVYNK-VELSYVVYNILIAAHSKAGNFTEAFKL-RDAMRSSNIHPTIFTY 665

Query: 355 NAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVW 414
           ++++ G+     VEEAK +F  M   G++ +   Y  +I G C+  Q+D+ +    ++  
Sbjct: 666 SSIIHGMCCNDLVEEAKGIFEEMRNEGLMPNVFCYTALIGGYCKLGQMDQIESILQEMTS 725

Query: 415 PSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKRE 474
                +   Y  MI G C+ G   EA   L E++ +G++P+ V Y V+  G CK +   E
Sbjct: 726 NCIQPNKITYTIMIDGYCKMGNTKEATKLLNEMIANGISPDTVTYTVLQKGYCKENELEE 785

Query: 475 AYQILREMRKNGLNPDAVTWRIL-DKLH 501
             Q         +  + +T+  L DKLH
Sbjct: 786 TLQ-----GDTAVPLEEITYTTLVDKLH 808



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 120/494 (24%), Positives = 223/494 (45%), Gaps = 41/494 (8%)

Query: 13  AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVR 72
           A   F    S+G  P++ S   L+    ++ E+  +++VFD M   GVL +  TY+  + 
Sbjct: 190 AFDTFMLFTSKGVFPSLKSCNFLMSSLVKSNELHKSFRVFDAMCRGGVLIDVYTYATAIN 249

Query: 73  GVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQ 132
              +   ++ A  L  K+ E       +  N   + NL+D LC+ G + E       M +
Sbjct: 250 AYCKGGKIDEAVGLFLKMGEG-----GVLPNVVTYNNLIDGLCKSGRLEEALMFKGRMVE 304

Query: 133 GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMR 192
            K        G +++ L +  +   A+ V+  M  +G +P+   +N+++ G  + G    
Sbjct: 305 NKVNPSLVTYGILVNGLVKFEKFDEANSVLVEMYSKGFSPNEFVFNALIDGYSRKGNMDD 364

Query: 193 AYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLR 252
           A ++ ++    G  P+  T+  L++G C  + +E+A +VL+++LS               
Sbjct: 365 ALRVRDDMTLKGLKPNAVTHNTLLQGFCRTNQMEQAEQVLEYLLS--------------- 409

Query: 253 ALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCA 312
                       NVL          D  +   V++  CK  + + ALK++  ++      
Sbjct: 410 ------------NVL------SVNEDACSY--VLHLLCKSSKFDSALKIVKALLLRNIKV 449

Query: 313 PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKE 372
            D++  T ++ GL   G+  EA++L +++  ++G +    T NA+L GL     +EE   
Sbjct: 450 NDSL-LTLLVCGLCKCGKHLEAIDLWFRLADKKGLAANTTTSNALLYGLCERGNMEEVFP 508

Query: 373 VFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLC 432
           V   M+  G+V D  +Y  +I G C+S +++EA +  + ++      D Y Y  ++KGL 
Sbjct: 509 VCKEMVERGLVLDGISYNTLIFGCCKSGKIEEAFKLKEKMMKQGFKPDTYTYNFLMKGLA 568

Query: 433 RSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAV 492
             GK+ +    L+E  D GV PNI  Y ++++G C       A  +  ++  N +    V
Sbjct: 569 DKGKMDDVGRVLHEAKDHGVVPNIYTYALMLEGYCNADRIDNAVSLFNKLVYNKVELSYV 628

Query: 493 TWRILDKLHGNRGN 506
            + IL   H   GN
Sbjct: 629 VYNILIAAHSKAGN 642


>gi|302780004|ref|XP_002971777.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
 gi|300160909|gb|EFJ27526.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
          Length = 556

 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 139/503 (27%), Positives = 245/503 (48%), Gaps = 24/503 (4%)

Query: 17  FFDM--KSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGV 74
           FFD   +  G+  +V SY  L+    ++G      KV+ ++ H G  PN +T+ +L+RG 
Sbjct: 13  FFDWAGEQDGYKHDVHSYNHLLDILVKSGHQFRTGKVYKDLLHSGCSPNLVTFKILIRGN 72

Query: 75  LRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGK 134
            +     RA   +     R  +E  ++ +   F  L+  L ++G  ++  ++ E+M   +
Sbjct: 73  CKAGQATRALEFL-----RALDEFSVAPDVYIFNFLIHGLFKDGNPDQAVKLFENMESSR 127

Query: 135 SVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRG--LTPSLVSYNSIVH-GLCKHGGCM 191
              + F    +I  LC+SG    A  ++  M +RG    P +V+YN++++ G+CK G   
Sbjct: 128 VNPDIFTYNTVISGLCKSGNLEKARELLEEMIRRGGKSAPDIVTYNTLINAGICKDGDVE 187

Query: 192 RAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYL 251
            A ++L+     G  P   TY  ++  LC    + +A ++L+ M    D+      N  L
Sbjct: 188 EALEILDGMKLAGPAPDVITYNSIIHALCVAGRVVEAAEILKTMSCSPDL---VTFNTLL 244

Query: 252 RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC 311
              C        L VL  M +    PDVIT   ++NG C++G+++ A  +L ++V   + 
Sbjct: 245 DGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYI 304

Query: 312 APDAVTFTTIIFGLLNVGRIQEALNLLYQV--------MPQRGYSPGIVTYNAVLRGLFR 363
            PD + +T+++ GL   G I+EA  L+ ++        M      P + TYN VL GL +
Sbjct: 305 -PDVIAYTSLVDGLCKSGEIEEAHKLVKEMSAREILAEMVSINMVPPLFTYNIVLGGLIK 363

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
              + +A  + + ++  G V D  TY  +IDGLC++N++ EA    D++       ++  
Sbjct: 364 DGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADEMASLGCFPNDVT 423

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
             +++ GLCR G++ +A   + E+      PN+V Y  +IDG CK     +A  +L  MR
Sbjct: 424 LGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDGLCKSDRMDDACVVLDAMR 483

Query: 484 KNGLNPDAVTWR--ILDKLHGNR 504
             G+  D   +R  I+  +HG R
Sbjct: 484 GQGVALDDFAYRKLIVSMIHGGR 506



 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 130/496 (26%), Positives = 241/496 (48%), Gaps = 20/496 (4%)

Query: 15  KLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGV 74
           K++ D+   G  PN+V++  LI G C+ G+   A +    +    V P+   ++ L+ G+
Sbjct: 48  KVYKDLLHSGCSPNLVTFKILIRGNCKAGQATRALEFLRALDEFSVAPDVYIFNFLIHGL 107

Query: 75  LRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQ-- 132
            +  + ++A     KL+E M E   ++ +   +  ++  LC+ G + +   + E+M +  
Sbjct: 108 FKDGNPDQA----VKLFENM-ESSRVNPDIFTYNTVISGLCKSGNLEKARELLEEMIRRG 162

Query: 133 GKSVNEEFACGHMIDS-LCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCM 191
           GKS  +      +I++ +C+ G    A  ++  M+  G  P +++YNSI+H LC  G  +
Sbjct: 163 GKSAPDIVTYNTLINAGICKDGDVEEALEILDGMKLAGPAPDVITYNSIIHALCVAGRVV 222

Query: 192 RAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYL 251
            A ++L+        P   T+  L++G C    L +A +VL+ M  +  +       I +
Sbjct: 223 EAAEILK---TMSCSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILV 279

Query: 252 RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC 311
             LC +        +L  +++    PDVI   ++++G CK G IEEA K++ +M A +  
Sbjct: 280 NGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSAREIL 339

Query: 312 A--------PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           A        P   T+  ++ GL+  G I +A++L+  ++  RGY P +VTYN ++ GL +
Sbjct: 340 AEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLV-ARGYVPDVVTYNTLIDGLCK 398

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
             RV EA ++ + M  +G   +  T   V+ GLC   ++D+A     ++    +  +  V
Sbjct: 399 ANRVREACDLADEMASLGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVV 458

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y ++I GLC+S ++ +A   L  +   GV  +   Y  +I          EA  +  EM 
Sbjct: 459 YTSLIDGLCKSDRMDDACVVLDAMRGQGVALDDFAYRKLIVSMIHGGRVAEAMAMYDEMV 518

Query: 484 KNGLNPDAVTWRILDK 499
             G  PD  T + L++
Sbjct: 519 ARGFLPDGSTSKTLEE 534



 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 120/414 (28%), Positives = 221/414 (53%), Gaps = 22/414 (5%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEM--RHCGVLPNSLTYSV 69
           +A KLF +M+S    P++ +Y T+I G C++G ++ A ++ +EM  R     P+ +TY+ 
Sbjct: 115 QAVKLFENMESSRVNPDIFTYNTVISGLCKSGNLEKARELLEEMIRRGGKSAPDIVTYNT 174

Query: 70  LVR-GVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
           L+  G+ +  DVE A     ++ + MK     + +   + +++ +LC  G V E   I +
Sbjct: 175 LINAGICKDGDVEEA----LEILDGMKLAGP-APDVITYNSIIHALCVAGRVVEAAEILK 229

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
            M     +        ++D  C++G    A  V+  M +  + P +++Y  +V+GLC+ G
Sbjct: 230 TMSCSPDL---VTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVG 286

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEK---------ARKVLQFMLSKK 239
               A+ LLEE ++ GY+P    Y  LV+GLC   ++E+         AR++L  M+S  
Sbjct: 287 QVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSAREILAEMVSIN 346

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
            V      NI L  L    + ++ ++++  ++     PDV+T NT+I+G CK  R+ EA 
Sbjct: 347 MVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREAC 406

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
            + ++M A   C P+ VT  +++FGL  VGR+ +A +L+ + M ++ ++P +V Y +++ 
Sbjct: 407 DLADEM-ASLGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVE-MSRKRHAPNVVVYTSLID 464

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413
           GL +  R+++A  V + M G GV  D   Y  +I  +    ++ EA   +D++V
Sbjct: 465 GLCKSDRMDDACVVLDAMRGQGVALDDFAYRKLIVSMIHGGRVAEAMAMYDEMV 518



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 96/355 (27%), Positives = 172/355 (48%), Gaps = 19/355 (5%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           +C    V EA ++   MK  G  P+V++Y ++IH  C  G +  A ++   M  C   P+
Sbjct: 180 ICKDGDVEEALEILDGMKLAGPAPDVITYNSIIHALCVAGRVVEAAEILKTM-SCS--PD 236

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +T++ L+ G  +   + RA     ++ E M  E  L  +   +  LV+ LCR G V   
Sbjct: 237 LVTFNTLLDGFCKAGMLPRA----LEVLEEMCRENILP-DVITYTILVNGLCRVGQVQVA 291

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKR---------GLTPSL 174
           F + E++ +   + +  A   ++D LC+SG    A ++V  M  R          + P L
Sbjct: 292 FYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSAREILAEMVSINMVPPL 351

Query: 175 VSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQF 234
            +YN ++ GL K G   +A  L+ + +  GY+P   TY  L++GLC  + + +A  +   
Sbjct: 352 FTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADE 411

Query: 235 MLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGR 294
           M S             +  LC +    +  +++V M + +  P+V+   ++I+G CK  R
Sbjct: 412 MASLGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDGLCKSDR 471

Query: 295 IEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSP 349
           +++A  VL D + G+  A D   +  +I  +++ GR+ EA+  +Y  M  RG+ P
Sbjct: 472 MDDACVVL-DAMRGQGVALDDFAYRKLIVSMIHGGRVAEAMA-MYDEMVARGFLP 524



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 122/239 (51%), Gaps = 4/239 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C    +  A ++  +M     +P+V++YT L++G CR G++ VA+ + +E+   G 
Sbjct: 244 LDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGY 303

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNA----AFANLVDSLCR 116
           +P+ + Y+ LV G+ ++ ++E A+ L+ ++  R    E +S+N       +  ++  L +
Sbjct: 304 IPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSAREILAEMVSINMVPPLFTYNIVLGGLIK 363

Query: 117 EGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVS 176
           +G +++   +  D+     V +      +ID LC++ R   A  +   M   G  P+ V+
Sbjct: 364 DGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADEMASLGCFPNDVT 423

Query: 177 YNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM 235
             S+V GLC+ G    A+ L+ E  +  + P+   Y  L++GLC    ++ A  VL  M
Sbjct: 424 LGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDGLCKSDRMDDACVVLDAM 482



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 64/263 (24%), Positives = 119/263 (45%), Gaps = 42/263 (15%)

Query: 6   GLSRVGEAHKLFF---DMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVL- 61
           GL RVG+    F+   ++  +G++P+V++YT+L+ G C++GE++ A+K+  EM    +L 
Sbjct: 281 GLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSAREILA 340

Query: 62  --------PNSLTYSVLVRGVLRTRDVERANVLMFKL---------------------WE 92
                   P   TY++++ G+++   + +A  L+  L                       
Sbjct: 341 EMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKAN 400

Query: 93  RMKEEEDLS---------VNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACG 143
           R++E  DL+          N+    ++V  LCR G V++ + +  +M + +         
Sbjct: 401 RVREACDLADEMASLGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVYT 460

Query: 144 HMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQF 203
            +ID LC+S R   A  V+  MR +G+     +Y  ++  +   G    A  + +E +  
Sbjct: 461 SLIDGLCKSDRMDDACVVLDAMRGQGVALDDFAYRKLIVSMIHGGRVAEAMAMYDEMVAR 520

Query: 204 GYLPSEHTYKVLVEGLCGESDLE 226
           G+LP   T K L E     S  E
Sbjct: 521 GFLPDGSTSKTLEEAAMSNSVFE 543



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 55/112 (49%), Gaps = 8/112 (7%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC + RV +A  L  +M  + H PNVV YT+LI G C++  MD A  V D MR  GV  +
Sbjct: 431 LCRVGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDGLCKSDRMDDACVVLDAMRGQGVALD 490

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWER--------MKEEEDLSVNNAAF 107
              Y  L+  ++    V  A  +  ++  R         K  E+ +++N+ F
Sbjct: 491 DFAYRKLIVSMIHGGRVAEAMAMYDEMVARGFLPDGSTSKTLEEAAMSNSVF 542


>gi|115459104|ref|NP_001053152.1| Os04g0488500 [Oryza sativa Japonica Group]
 gi|113564723|dbj|BAF15066.1| Os04g0488500 [Oryza sativa Japonica Group]
          Length = 801

 Score =  200 bits (508), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 139/517 (26%), Positives = 248/517 (47%), Gaps = 32/517 (6%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC  ++V +A  LF +MK  G  P+V +YT LI  +C+ G ++ A  +F+EMR  G  P 
Sbjct: 298 LCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPT 357

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY+ L+   L+ + V +AN     ++ RM  +     N+  +  LVD LC+ G +++ 
Sbjct: 358 VVTYTALIHAYLKAKQVPQAN----DIFHRMV-DAGCRPNDVTYGALVDGLCKAGNISKA 412

Query: 124 FRI-AEDMPQGKSVNEE--FAC-------------GHMIDSLCRSGRNHGASRVVYVMRK 167
           F + A+ +    S + +  F C             G ++D LC++ +   A  ++  M  
Sbjct: 413 FEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLS 472

Query: 168 RGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEK 227
            G  P+ + Y++++ G CK G    A ++  +  + GYLPS HTY  L++ +  +  L+ 
Sbjct: 473 SGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDL 532

Query: 228 ARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVIN 287
           A KVL  ML              +  LC I    + L +L  M +  C P+V+T   +I+
Sbjct: 533 AMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALID 592

Query: 288 GFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGY 347
           G  K G+I+ +L +   M + K C+P+ VT+  +I  L   G + +A  LL   M Q  +
Sbjct: 593 GLGKAGKIDLSLDLFTQM-SRKGCSPNYVTYRVLINHLCAAGLLDKA-RLLLGEMKQTYW 650

Query: 348 SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKR 407
              +  Y   ++G    +    +  +   M   G V  +  Y ++ID   ++ +L+ A  
Sbjct: 651 PKYLQGYRCAIQGFS--KSFIASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAME 708

Query: 408 FWDDIVW-PSNIH-DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDG 465
              +++  PS++  DN +YA++I+ LC + ++ EA     E+   G  P +  +  +I G
Sbjct: 709 LHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMTRRGFVPELSVFVCLIKG 768

Query: 466 ACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
             ++    EA Q+       G+  + V W+     HG
Sbjct: 769 LVEVKKWDEALQLCY-----GICHEGVNWQGNKSFHG 800



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 123/511 (24%), Positives = 225/511 (44%), Gaps = 64/511 (12%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           ++G   ++   M + G  PN   + +L+H YC   +   AYK+ + M  CG  P  + Y+
Sbjct: 157 QLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYN 216

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEE---EDLSVNNAAFANLVDSLCREGYVNEVFR 125
           + +  +     +   ++L   L E++  E    +  +N    AN    LC  G  ++ F+
Sbjct: 217 IFIGSICGQEKLPSPDLL--DLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQ 274

Query: 126 IAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLC 185
           + ++M                                  MRK G  P   +Y+ ++  LC
Sbjct: 275 LIKEM----------------------------------MRK-GFVPDTSTYSKVITFLC 299

Query: 186 KHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM----LSKKDV 241
                 +A+ L +E    G  P  +TY +L++  C    +E+A+ + + M     S   V
Sbjct: 300 HATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVV 359

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
             T + + YL+A    K   +  ++   M+   C+P+ +T   +++G CK G I +A +V
Sbjct: 360 TYTALIHAYLKA----KQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEV 415

Query: 302 LNDMVAGK---------------FCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
              ++                    AP+ VT+  ++ GL    ++  A  LL   M   G
Sbjct: 416 YAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELL-DAMLSSG 474

Query: 347 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
             P  + Y+A++ G  +  +++ A+EVF  M   G +    TY  +ID + +  +LD A 
Sbjct: 475 CEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAM 534

Query: 407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466
           +    ++  S   +   Y AMI GLCR G+  +A+  L  + + G +PN+V Y  +IDG 
Sbjct: 535 KVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGL 594

Query: 467 CKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            K      +  +  +M + G +P+ VT+R+L
Sbjct: 595 GKAGKIDLSLDLFTQMSRKGCSPNYVTYRVL 625



 Score =  137 bits (346), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 112/502 (22%), Positives = 206/502 (41%), Gaps = 96/502 (19%)

Query: 103 NNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVV 162
           +   +  LV  L   G V+  FR+ ++M +     + F  G    +LC+ GR   A  ++
Sbjct: 39  SKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGRWADALDMI 98

Query: 163 --------------------------------YVMRKRGLTPSLVSYNSIVHGLCKH--- 187
                                           + MR     P++V+Y +++ G  K    
Sbjct: 99  EREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQL 158

Query: 188 GGCMR--------------------------------AYQLLEEGIQFGYLPSEHTYKVL 215
           G C R                                AY+LL      G  P    Y + 
Sbjct: 159 GWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIF 218

Query: 216 VEGLCGESDLEK------ARKVLQFMLSKKDV-DRTRICNIYLRALCLIKNPTELLNVLV 268
           +  +CG+  L        A K+   ML+   V ++  + N + R LC +    +   ++ 
Sbjct: 219 IGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVAN-FARCLCGVGKFDKAFQLIK 277

Query: 269 FMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM-VAGKFCAPDAVTFTTIIFGLLN 327
            M++    PD  T + VI   C   ++E+A  +  +M + G    PD  T+T +I     
Sbjct: 278 EMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVG--VTPDVYTYTILIDSFCK 335

Query: 328 VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADST 387
            G I++A   L++ M   G SP +VTY A++    + ++V +A ++F+ M+  G   +  
Sbjct: 336 AGLIEQA-QWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDV 394

Query: 388 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN----------------YVYAAMIKGL 431
           TY  ++DGLC++  + +A   +  ++  S+  D+                  Y A++ GL
Sbjct: 395 TYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGL 454

Query: 432 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 491
           C++ K+  A   L  ++ SG  PN + Y+ +IDG CK      A ++  +M K G  P  
Sbjct: 455 CKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSV 514

Query: 492 VTW-RILDKLHGNRGNDFGLRI 512
            T+  ++D++  +   D  +++
Sbjct: 515 HTYTSLIDRMFKDGRLDLAMKV 536



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 98/383 (25%), Positives = 176/383 (45%), Gaps = 62/383 (16%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   +V  AH+L   M S G  PN + Y  LI G+C+ G++D A +VF +M  CG 
Sbjct: 451 VDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGY 510

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           LP+  TY+ L+  + +     R ++ M  L + +K+    + N   +  ++D LC     
Sbjct: 511 LPSVHTYTSLIDRMFKDG---RLDLAMKVLSQMLKDS--CTPNVVTYTAMIDGLC----- 560

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                                         R G +  A +++ +M ++G +P++V+Y ++
Sbjct: 561 ------------------------------RIGESEKALKLLSLMEEKGCSPNVVTYTAL 590

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GL K G    +  L  +  + G  P+  TY+VL+  LC    L+KAR +L  M     
Sbjct: 591 IDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEM----- 645

Query: 241 VDRTRICNIYLRAL-CLI----KNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 295
             +      YL+   C I    K+    L +L  M      P       +I+ F K GR+
Sbjct: 646 --KQTYWPKYLQGYRCAIQGFSKSFIASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRL 703

Query: 296 EEALKVLNDMVAGKFCAPDAVT-----FTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG 350
           E A+++  +M+      P +V      + ++I  L    +++EA   LY  M +RG+ P 
Sbjct: 704 EIAMELHKEMME----VPSSVKTDNDMYASLIQALCLASQVEEAFR-LYSEMTRRGFVPE 758

Query: 351 IVTYNAVLRGLFRLRRVEEAKEV 373
           +  +  +++GL  +++ +EA ++
Sbjct: 759 LSVFVCLIKGLVEVKKWDEALQL 781



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 85/349 (24%), Positives = 152/349 (43%), Gaps = 11/349 (3%)

Query: 155 NHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKV 214
           +H A      ++  G  PS V+YN++V  L   G     +++ +E  + G+     T   
Sbjct: 21  SHAAGDSEDPLKDFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGC 80

Query: 215 LVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQ 274
               LC E     A  +++    K D   T +C   +  L       E ++ L  M    
Sbjct: 81  FAHALCKEGRWADALDMIEREDFKLD---TVLCTHMISGLMEASYFDEAMSFLHRMRCNS 137

Query: 275 CQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEA 334
           C P+V+T  T+++GF K  ++    +++N M+  + C P+   F +++    N      A
Sbjct: 138 CIPNVVTYRTLLSGFLKKKQLGWCKRIIN-MMMTEGCNPNPSLFNSLVHSYCNEKDYAYA 196

Query: 335 LNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEE------AKEVFNCMLGIGVVADSTT 388
             LL + M   G  PG V YN  +  +    ++        A++++  ML    V +   
Sbjct: 197 YKLLNR-MTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVN 255

Query: 389 YAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELV 448
            A     LC   + D+A +   +++    + D   Y+ +I  LC + K+ +A     E+ 
Sbjct: 256 VANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMK 315

Query: 449 DSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
             GVTP++  Y ++ID  CK  +  +A  +  EMR  G +P  VT+  L
Sbjct: 316 MVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTAL 364


>gi|125556563|gb|EAZ02169.1| hypothetical protein OsI_24261 [Oryza sativa Indica Group]
          Length = 991

 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 139/496 (28%), Positives = 236/496 (47%), Gaps = 17/496 (3%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C    +  AH+ F  +   G  P   +   L+ GYCRTGE+  A  +F  M   G   N 
Sbjct: 194 CKEGDLTTAHRCFRLLLEGGLEPETFTCNALVLGYCRTGELRKACWLFLMMPLMGCQRNE 253

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
            +Y++L++G+   + V  A VL       M + +  S N  AF  L+  LC+ G V +  
Sbjct: 254 YSYTILIQGLCEAKCVREALVLFL-----MMKRDGCSPNVRAFTFLISGLCKSGRVGDAR 308

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
            + + MPQ   V        MI    + GR + A ++  +M K G  P   +YN++++GL
Sbjct: 309 LLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGL 368

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
           C       A +LL   ++ G+ P+  T+  L+ G C     + A ++   M+S K     
Sbjct: 369 CDQKT-EEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDL 427

Query: 245 RICNIYLRALC---LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
           ++    + +L     +K   ELLN +         P+VIT  ++I+G+CK G+++ AL+V
Sbjct: 428 QVFGKLINSLIKKDRLKEAKELLNEIS---ANGLVPNVITYTSIIDGYCKSGKVDIALEV 484

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
           L  M+    C P+A T+ ++++GL+   ++ +A+ LL + M + G  P ++TY  +L+G 
Sbjct: 485 LK-MMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTK-MQKDGIIPNVITYTTLLQGQ 542

Query: 362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
                 + A  +F  M   G+  D   YA++ D LC++ + +EA  F   IV        
Sbjct: 543 CDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSF---IVRKGVALTK 599

Query: 422 YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
             Y  +I G  ++G    A   +  ++D G TP+   Y+V++   CK     EA  IL +
Sbjct: 600 VYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQ 659

Query: 482 MRKNGLNPDAVTWRIL 497
           M   G+      + IL
Sbjct: 660 MSLRGIKCTIFAYTIL 675



 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 135/503 (26%), Positives = 225/503 (44%), Gaps = 12/503 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   RVG+A  LF  M   G VP+V++Y  +I GY + G M+ A K+ + M   G  P+
Sbjct: 298 LCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPD 357

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             TY+ L+ G+   +  E   +L   +      +E  +     F NL++  C     ++ 
Sbjct: 358 DWTYNTLIYGLCDQKTEEAEELLNNAV------KEGFTPTVVTFTNLINGYCMAEKFDDA 411

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            R+   M   K   +    G +I+SL +  R   A  ++  +   GL P++++Y SI+ G
Sbjct: 412 LRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDG 471

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK G    A ++L+   + G  P+  TY  L+ GL  +  L KA  +L  M     +  
Sbjct: 472 YCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPN 531

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                  L+  C   +      +   M Q   +PD      + +  CK GR EEA     
Sbjct: 532 VITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYS--- 588

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
             +  K  A   V +TT+I G    G    A  L+ + M   G +P   TY+ +L  L +
Sbjct: 589 -FIVRKGVALTKVYYTTLIDGFSKAGNTDFAATLI-ERMIDEGCTPDSYTYSVLLHALCK 646

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
            +R+ EA  + + M   G+      Y I+ID +    + D AKR ++++    +      
Sbjct: 647 QKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATT 706

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y   I   C+ G++ +A   + ++   GV P++V YN++IDG   +     A+  L+ M 
Sbjct: 707 YTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMV 766

Query: 484 KNGLNPDAVTWRILDKLHGNRGN 506
                P+  T+ +L K H  +GN
Sbjct: 767 GASCEPNYWTYCLLLK-HLLKGN 788



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 136/519 (26%), Positives = 249/519 (47%), Gaps = 36/519 (6%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ L    R+ EA +L  ++ + G VPNV++YT++I GYC++G++D+A +V   M   G 
Sbjct: 434 INSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGC 493

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN+ TY+ L+ G+++ + + +A  L+ K+     +++ +  N   +  L+   C E   
Sbjct: 494 QPNAWTYNSLMYGLVKDKKLHKAMALLTKM-----QKDGIIPNVITYTTLLQGQCDEHDF 548

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +  FR+ E M Q     +E A   + D+LC++GR   A    +++RK G+  + V Y ++
Sbjct: 549 DNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEA--YSFIVRK-GVALTKVYYTTL 605

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G  K G    A  L+E  I  G  P  +TY VL+  LC +  L +A  +L  M S + 
Sbjct: 606 IDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQM-SLRG 664

Query: 241 VDRTRICNIYLRALCLIKNPTE-----LLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 295
           +     C I+   + + +   E        +   M  +  +P   T    IN +CK GR+
Sbjct: 665 IK----CTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRL 720

Query: 296 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN 355
           E+A  ++  M   +  APD VT+  +I G  ++G I  A + L + M      P   TY 
Sbjct: 721 EDAEDLILKM-EREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKR-MVGASCEPNYWTYC 778

Query: 356 AVLR----------------GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCES 399
            +L+                G++ L  ++   ++   M+  G+    TTY+ +I G C++
Sbjct: 779 LLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERMVKHGLNPTVTTYSSLIAGFCKA 838

Query: 400 NQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCY 459
            +L+EA    D +       +  +Y  +IK  C +    +A+ F+  + + G  P +  Y
Sbjct: 839 GRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMSECGFQPQLESY 898

Query: 460 NVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILD 498
            +++ G C      +   +  ++ + G N D V W+IL+
Sbjct: 899 RLLVVGLCNEGDFEKVKSLFCDLLELGYNHDEVAWKILN 937



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 123/517 (23%), Positives = 220/517 (42%), Gaps = 79/517 (15%)

Query: 15  KLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGV 74
           +++  +   G +P+ V+Y T+I  YC+ G++  A++ F  +   G+ P + T + LV G 
Sbjct: 169 RVYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRCFRLLLEGGLEPETFTCNALVLGY 228

Query: 75  LRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGK 134
            RT ++ +A  L                                           MP   
Sbjct: 229 CRTGELRKACWLFLM----------------------------------------MPLMG 248

Query: 135 SVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAY 194
               E++   +I  LC +     A  +  +M++ G +P++ ++  ++ GLCK G    A 
Sbjct: 249 CQRNEYSYTILIQGLCEAKCVREALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDAR 308

Query: 195 QLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRAL 254
            L +   Q G +PS  TY  ++ G      +  A K+ + M            N  +  L
Sbjct: 309 LLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGL 368

Query: 255 CLIKN--PTELLN----------VLVF----------------------MLQTQCQPDVI 280
           C  K     ELLN          V+ F                      M+ ++C+ D+ 
Sbjct: 369 CDQKTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQ 428

Query: 281 TLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQ 340
               +IN   K  R++EA ++LN++ A     P+ +T+T+II G    G++  AL +L +
Sbjct: 429 VFGKLINSLIKKDRLKEAKELLNEISANGL-VPNVITYTSIIDGYCKSGKVDIALEVL-K 486

Query: 341 VMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN 400
           +M + G  P   TYN+++ GL + +++ +A  +   M   G++ +  TY  ++ G C+ +
Sbjct: 487 MMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEH 546

Query: 401 QLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYN 460
             D A R ++ +       D + YA +   LC++G+  EA  F   +V  GV    V Y 
Sbjct: 547 DFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSF---IVRKGVALTKVYYT 603

Query: 461 VVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            +IDG  K      A  ++  M   G  PD+ T+ +L
Sbjct: 604 TLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVL 640



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 113/247 (45%), Gaps = 3/247 (1%)

Query: 248 NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA 307
           N  LR+L        +  V   ++Q    PD +T NT+I  +CK G +  A +    ++ 
Sbjct: 152 NFALRSLARFDMTEYMGRVYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRCFRLLLE 211

Query: 308 GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRV 367
           G    P+  T   ++ G    G +++A   L+ +MP  G      +Y  +++GL   + V
Sbjct: 212 GGL-EPETFTCNALVLGYCRTGELRKAC-WLFLMMPLMGCQRNEYSYTILIQGLCEAKCV 269

Query: 368 EEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAM 427
            EA  +F  M   G   +   +  +I GLC+S ++ +A+  +D +     +     Y AM
Sbjct: 270 REALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAM 329

Query: 428 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
           I G  + G++++A+     +  +G  P+   YN +I G C      EA ++L    K G 
Sbjct: 330 IVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLCD-QKTEEAEELLNNAVKEGF 388

Query: 488 NPDAVTW 494
            P  VT+
Sbjct: 389 TPTVVTF 395



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/272 (25%), Positives = 119/272 (43%), Gaps = 22/272 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C   R+ +A  L   M+  G  P+VV+Y  LI G    G +D A+     M     
Sbjct: 711 INSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASC 770

Query: 61  LPNSLTYSVLVRGVLR-----TRDVERANV-------LMFKLWERMKEEEDLSVNNAAFA 108
            PN  TY +L++ +L+      R V+ + +       + ++L ERM +   L+     ++
Sbjct: 771 EPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERMVKH-GLNPTVTTYS 829

Query: 109 NLVDSLCREGYVNEVFRIAEDM-PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRK 167
           +L+   C+ G + E   + + M  +G S NE+     +I   C +     A   V +M +
Sbjct: 830 SLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIY-TLLIKCCCDTKFFEKALSFVSIMSE 888

Query: 168 RGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEK 227
            G  P L SY  +V GLC  G   +   L  + ++ GY   E  +K+L +GL     ++ 
Sbjct: 889 CGFQPQLESYRLLVVGLCNEGDFEKVKSLFCDLLELGYNHDEVAWKILNDGLLKAGYVDI 948

Query: 228 ARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
             ++L  M         R C I  +   L+ N
Sbjct: 949 CFQMLSIM-------EKRYCCISSQTYALVTN 973


>gi|302773712|ref|XP_002970273.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
 gi|300161789|gb|EFJ28403.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
          Length = 831

 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 136/491 (27%), Positives = 234/491 (47%), Gaps = 12/491 (2%)

Query: 11  GEAHKLF-FDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSV 69
           GE  ++F  D++ R  V  ++    L++   +   ++ A K+F  M   G  P++  YS 
Sbjct: 216 GEFSRVFGRDLEKRVAVEMMLKKALLVNFVIQDKAIE-ASKLFRAMVKSGCKPDATIYSY 274

Query: 70  LVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAED 129
           +V    +  +++ A    FKL+  M  E    +NN A+   +  LC+ G + + F     
Sbjct: 275 MVLAHCKLENLDEA----FKLFLEMAVESKAPLNNVAWTAFLSGLCKSGKIEQAFEACRT 330

Query: 130 MPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG 189
           M +  S ++      +I  L  SGR   A      +  R + PS  + +S++  LCK G 
Sbjct: 331 MQESLSSSQPVY-DMLIRLLIESGRIDKAEEACLEIAGRNIQPSSGTCHSVIQELCKAGR 389

Query: 190 CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK--KDVDRTRIC 247
              A  LLE  I+ GY P   T+ +L+  LC    +++A++ LQ M  K           
Sbjct: 390 VDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMDRKISSRSSSCFSY 449

Query: 248 NIYLRALCLIKNPTELLNVLVFMLQTQC-QPDVITLNTVINGFCKMGRIEEALKVLNDMV 306
           N  L +LC  K   +   +   M+  +   PDV++ + +I+GFCK+  +  A K+   M+
Sbjct: 450 NSLLNSLCKAKKVHQAFAIFSTMVSERSFVPDVVSYSILIDGFCKIDELGRAEKLYKQMI 509

Query: 307 AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 366
               C P+  T+   + GL+  GRI +A  + Y+ M   G SP ++TY+ ++ G    R+
Sbjct: 510 DLN-CVPNVTTYNAFLNGLMRKGRIADAQGV-YEEMVAAGCSPDVITYSTLIHGFSLARK 567

Query: 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAA 426
            ++A E+F  M+  G   ++ TY  ++ GLC+ ++ DEA   +  +V      D   Y  
Sbjct: 568 HDQAHELFETMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDRVTYTT 627

Query: 427 MIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG 486
           ++ G C  GKI +AV    E+V  G  P++V YN ++ G  +     EA Q+ + M    
Sbjct: 628 LLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEAKQLFQVMVSRQ 687

Query: 487 LNPDAVTWRIL 497
             PD V+  I+
Sbjct: 688 CKPDTVSHNIM 698



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 134/492 (27%), Positives = 237/492 (48%), Gaps = 15/492 (3%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP-NSLTYSVL 70
           EA KLF  M   G  P+   Y+ ++  +C+   +D A+K+F EM      P N++ ++  
Sbjct: 252 EASKLFRAMVKSGCKPDATIYSYMVLAHCKLENLDEAFKLFLEMAVESKAPLNNVAWTAF 311

Query: 71  VRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDM 130
           + G+ ++  +E+A    F+    M  +E LS +   +  L+  L   G +++      ++
Sbjct: 312 LSGLCKSGKIEQA----FEACRTM--QESLSSSQPVYDMLIRLLIESGRIDKAEEACLEI 365

Query: 131 PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGC 190
                      C  +I  LC++GR   A  ++  M KRG  P + +++ +++ LCK    
Sbjct: 366 AGRNIQPSSGTCHSVIQELCKAGRVDSALSLLETMIKRGYCPDMATHSMLINELCKADKI 425

Query: 191 MRAYQLLEEGIQ---FGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD-VDRTRI 246
             A + L+ G+         S  +Y  L+  LC    + +A  +   M+S++  V     
Sbjct: 426 QEAQEFLQ-GMDRKISSRSSSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSFVPDVVS 484

Query: 247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV 306
            +I +   C I        +   M+   C P+V T N  +NG  + GRI +A  V  +MV
Sbjct: 485 YSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMV 544

Query: 307 AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 366
           A   C+PD +T++T+I G  ++ R  +  + L++ M  RG  P  VTYN +L GL +  +
Sbjct: 545 AAG-CSPDVITYSTLIHGF-SLARKHDQAHELFETMISRGCRPNAVTYNCLLHGLCKESK 602

Query: 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAA 426
            +EA E+F  M+  G   D  TY  ++ G C   ++++A   +D++V   +  D   Y  
Sbjct: 603 PDEAHELFRKMVERGCDPDRVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNC 662

Query: 427 MIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN- 485
           ++KG  R+GK  EA      +V     P+ V +N++IDG  K     +A ++   M ++ 
Sbjct: 663 LLKGFFRAGKPGEAKQLFQVMVSRQCKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDH 722

Query: 486 GLNPDAVTWRIL 497
           G +PD VT+  L
Sbjct: 723 GCSPDLVTYNSL 734



 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 122/501 (24%), Positives = 244/501 (48%), Gaps = 48/501 (9%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVP-NVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           C L  + EA KLF +M      P N V++T  + G C++G+++ A++    M+   +  +
Sbjct: 280 CKLENLDEAFKLFLEMAVESKAPLNNVAWTAFLSGLCKSGKIEQAFEACRTMQE-SLSSS 338

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
              Y +L+R ++ +  +++A     ++  R     ++  ++    +++  LC+ G V+  
Sbjct: 339 QPVYDMLIRLLIESGRIDKAEEACLEIAGR-----NIQPSSGTCHSVIQELCKAGRVDSA 393

Query: 124 FRIAEDM------PQGKS----VNE-----------EFACG----------------HMI 146
             + E M      P   +    +NE           EF  G                 ++
Sbjct: 394 LSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMDRKISSRSSSCFSYNSLL 453

Query: 147 DSLCRSGRNHGASRVVYVM-RKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY 205
           +SLC++ + H A  +   M  +R   P +VSY+ ++ G CK     RA +L ++ I    
Sbjct: 454 NSLCKAKKVHQAFAIFSTMVSERSFVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNC 513

Query: 206 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 265
           +P+  TY   + GL  +  +  A+ V + M++          +  +    L +   +   
Sbjct: 514 VPNVTTYNAFLNGLMRKGRIADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARKHDQAHE 573

Query: 266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 325
           +   M+   C+P+ +T N +++G CK  + +EA ++   MV  + C PD VT+TT+++G 
Sbjct: 574 LFETMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVE-RGCDPDRVTYTTLLYGF 632

Query: 326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 385
            NVG+I++A+ + +  M  +G+ P +V YN +L+G FR  +  EAK++F  M+      D
Sbjct: 633 CNVGKIEQAVEV-FDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEAKQLFQVMVSRQCKPD 691

Query: 386 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV-YAAMIKGLCRSGKIHEAVHFL 444
           + ++ I+IDGL ++ +LD+A   ++ +        + V Y ++I GLC   ++ EA+   
Sbjct: 692 TVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVF 751

Query: 445 YELVDSGVTPNIVCYNVVIDG 465
            E+    ++P+   +NV+++ 
Sbjct: 752 KEIDRLKLSPDPHAFNVLLEA 772



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 123/497 (24%), Positives = 234/497 (47%), Gaps = 16/497 (3%)

Query: 11  GEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVL 70
           GEA   F  +++R    +V +Y  L+    R  ++  A +VF++M   GV+PN  TY+VL
Sbjct: 111 GEALTFFRWLQARNFKHDVFTYNCLLDKLIRHRDLKQAGQVFEKMVAQGVVPNGFTYAVL 170

Query: 71  VRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRI-AED 129
           V+     R+ + A     ++ ++         ++  +  + + L   G   E  R+   D
Sbjct: 171 VQSSCYERNSDEAVRFFGEMVDK-----GFKPSSTLYQKVTECLKATGKEGEFSRVFGRD 225

Query: 130 MPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG 189
           + +  +V        +++ + +  +   AS++   M K G  P    Y+ +V   CK   
Sbjct: 226 LEKRVAVEMMLKKALLVNFVIQD-KAIEASKLFRAMVKSGCKPDATIYSYMVLAHCKLEN 284

Query: 190 CMRAYQL-LEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
              A++L LE  ++     +   +   + GLC    +E+A +  + M       +  + +
Sbjct: 285 LDEAFKLFLEMAVESKAPLNNVAWTAFLSGLCKSGKIEQAFEACRTMQESLSSSQP-VYD 343

Query: 249 IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 308
           + +R L       +     + +     QP   T ++VI   CK GR++ AL +L  M+  
Sbjct: 344 MLIRLLIESGRIDKAEEACLEIAGRNIQPSSGTCHSVIQELCKAGRVDSALSLLETMIKR 403

Query: 309 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQR--GYSPGIVTYNAVLRGLFRLRR 366
            +C PD  T + +I  L    +IQEA   L Q M ++    S    +YN++L  L + ++
Sbjct: 404 GYC-PDMATHSMLINELCKADKIQEAQEFL-QGMDRKISSRSSSCFSYNSLLNSLCKAKK 461

Query: 367 VEEAKEVFNCMLGI-GVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYA 425
           V +A  +F+ M+     V D  +Y+I+IDG C+ ++L  A++ +  ++  + + +   Y 
Sbjct: 462 VHQAFAIFSTMVSERSFVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYN 521

Query: 426 AMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN 485
           A + GL R G+I +A     E+V +G +P+++ Y+ +I G        +A+++   M   
Sbjct: 522 AFLNGLMRKGRIADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARKHDQAHELFETMISR 581

Query: 486 GLNPDAVTWRILDKLHG 502
           G  P+AVT+  L  LHG
Sbjct: 582 GCRPNAVTYNCL--LHG 596



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 93/362 (25%), Positives = 162/362 (44%), Gaps = 42/362 (11%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKS-RGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCG 59
           ++ LC   +V +A  +F  M S R  VP+VVSY+ LI G+C+  E+  A K++ +M    
Sbjct: 453 LNSLCKAKKVHQAFAIFSTMVSERSFVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLN 512

Query: 60  VLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGY 119
            +PN  TY+  + G++R                                        +G 
Sbjct: 513 CVPNVTTYNAFLNGLMR----------------------------------------KGR 532

Query: 120 VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           + +   + E+M       +      +I     + ++  A  +   M  RG  P+ V+YN 
Sbjct: 533 IADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARKHDQAHELFETMISRGCRPNAVTYNC 592

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++HGLCK      A++L  + ++ G  P   TY  L+ G C    +E+A +V   M+SK 
Sbjct: 593 LLHGLCKESKPDEAHELFRKMVERGCDPDRVTYTTLLYGFCNVGKIEQAVEVFDEMVSKG 652

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                   N  L+       P E   +   M+  QC+PD ++ N +I+G  K  R+++A+
Sbjct: 653 HDPDVVAYNCLLKGFFRAGKPGEAKQLFQVMVSRQCKPDTVSHNIMIDGLSKAKRLDDAV 712

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           +V   M     C+PD VT+ ++IFGL    R+ EA+ +  ++  +   SP    +N +L 
Sbjct: 713 EVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVFKEI-DRLKLSPDPHAFNVLLE 771

Query: 360 GL 361
            +
Sbjct: 772 AI 773



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 97/399 (24%), Positives = 191/399 (47%), Gaps = 9/399 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEM--RHC 58
           + +LC   RV  A  L   M  RG+ P++ +++ LI+  C+  ++  A +    M  +  
Sbjct: 381 IQELCKAGRVDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMDRKIS 440

Query: 59  GVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREG 118
               +  +Y+ L+  + + + V +A    F ++  M  E     +  +++ L+D  C+  
Sbjct: 441 SRSSSCFSYNSLLNSLCKAKKVHQA----FAIFSTMVSERSFVPDVVSYSILIDGFCKID 496

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
            +    ++ + M     V         ++ L R GR   A  V   M   G +P +++Y+
Sbjct: 497 ELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMVAAGCSPDVITYS 556

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
           +++HG        +A++L E  I  G  P+  TY  L+ GLC ES  ++A ++ + M+ +
Sbjct: 557 TLIHGFSLARKHDQAHELFETMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVER 616

Query: 239 K-DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
             D DR     + L   C +    + + V   M+     PDV+  N ++ GF + G+  E
Sbjct: 617 GCDPDRVTYTTL-LYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGE 675

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           A ++   MV+ + C PD V+   +I GL    R+ +A+ +  ++    G SP +VTYN++
Sbjct: 676 AKQLFQVMVSRQ-CKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSL 734

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 396
           + GL   +R+ EA +VF  +  + +  D   + ++++ +
Sbjct: 735 IFGLCGEQRLSEAMKVFKEIDRLKLSPDPHAFNVLLEAI 773



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 42/184 (22%), Positives = 70/184 (38%), Gaps = 38/184 (20%)

Query: 353 TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI 412
           T  AV++    LR   EA   F  +       D  TY  ++D L     L +A + ++ +
Sbjct: 99  TVGAVIK---HLRDGGEALTFFRWLQARNFKHDVFTYNCLLDKLIRHRDLKQAGQVFEKM 155

Query: 413 VWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDG------- 465
           V    + + + YA +++  C      EAV F  E+VD G  P+   Y  V +        
Sbjct: 156 VAQGVVPNGFTYAVLVQSSCYERNSDEAVRFFGEMVDKGFKPSSTLYQKVTECLKATGKE 215

Query: 466 ---------------ACKLSMKR-------------EAYQILREMRKNGLNPDAVTWRIL 497
                          A ++ +K+             EA ++ R M K+G  PDA  +  +
Sbjct: 216 GEFSRVFGRDLEKRVAVEMMLKKALLVNFVIQDKAIEASKLFRAMVKSGCKPDATIYSYM 275

Query: 498 DKLH 501
              H
Sbjct: 276 VLAH 279


>gi|38344241|emb|CAE02059.2| OJ991113_30.18 [Oryza sativa Japonica Group]
          Length = 736

 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 139/517 (26%), Positives = 248/517 (47%), Gaps = 32/517 (6%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC  ++V +A  LF +MK  G  P+V +YT LI  +C+ G ++ A  +F+EMR  G  P 
Sbjct: 233 LCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPT 292

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY+ L+   L+ + V +AN     ++ RM  +     N+  +  LVD LC+ G +++ 
Sbjct: 293 VVTYTALIHAYLKAKQVPQAN----DIFHRMV-DAGCRPNDVTYGALVDGLCKAGNISKA 347

Query: 124 FRI-AEDMPQGKSVNEE--FAC-------------GHMIDSLCRSGRNHGASRVVYVMRK 167
           F + A+ +    S + +  F C             G ++D LC++ +   A  ++  M  
Sbjct: 348 FEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLS 407

Query: 168 RGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEK 227
            G  P+ + Y++++ G CK G    A ++  +  + GYLPS HTY  L++ +  +  L+ 
Sbjct: 408 SGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDL 467

Query: 228 ARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVIN 287
           A KVL  ML              +  LC I    + L +L  M +  C P+V+T   +I+
Sbjct: 468 AMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALID 527

Query: 288 GFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGY 347
           G  K G+I+ +L +   M + K C+P+ VT+  +I  L   G + +A  LL   M Q  +
Sbjct: 528 GLGKAGKIDLSLDLFTQM-SRKGCSPNYVTYRVLINHLCAAGLLDKA-RLLLGEMKQTYW 585

Query: 348 SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKR 407
              +  Y   ++G    +    +  +   M   G V  +  Y ++ID   ++ +L+ A  
Sbjct: 586 PKYLQGYRCAIQGFS--KSFIASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAME 643

Query: 408 FWDDIVW-PSNIH-DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDG 465
              +++  PS++  DN +YA++I+ LC + ++ EA     E+   G  P +  +  +I G
Sbjct: 644 LHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMTRRGFVPELSVFVCLIKG 703

Query: 466 ACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
             ++    EA Q+       G+  + V W+     HG
Sbjct: 704 LVEVKKWDEALQLCY-----GICHEGVNWQGNKSFHG 735



 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 123/511 (24%), Positives = 225/511 (44%), Gaps = 64/511 (12%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           ++G   ++   M + G  PN   + +L+H YC   +   AYK+ + M  CG  P  + Y+
Sbjct: 92  QLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYN 151

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEE---EDLSVNNAAFANLVDSLCREGYVNEVFR 125
           + +  +     +   ++L   L E++  E    +  +N    AN    LC  G  ++ F+
Sbjct: 152 IFIGSICGQEKLPSPDLL--DLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQ 209

Query: 126 IAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLC 185
           + ++M                                  MRK G  P   +Y+ ++  LC
Sbjct: 210 LIKEM----------------------------------MRK-GFVPDTSTYSKVITFLC 234

Query: 186 KHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM----LSKKDV 241
                 +A+ L +E    G  P  +TY +L++  C    +E+A+ + + M     S   V
Sbjct: 235 HATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVV 294

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
             T + + YL+A    K   +  ++   M+   C+P+ +T   +++G CK G I +A +V
Sbjct: 295 TYTALIHAYLKA----KQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEV 350

Query: 302 LNDMVAGK---------------FCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
              ++                    AP+ VT+  ++ GL    ++  A  LL   M   G
Sbjct: 351 YAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELL-DAMLSSG 409

Query: 347 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
             P  + Y+A++ G  +  +++ A+EVF  M   G +    TY  +ID + +  +LD A 
Sbjct: 410 CEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAM 469

Query: 407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466
           +    ++  S   +   Y AMI GLCR G+  +A+  L  + + G +PN+V Y  +IDG 
Sbjct: 470 KVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGL 529

Query: 467 CKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            K      +  +  +M + G +P+ VT+R+L
Sbjct: 530 GKAGKIDLSLDLFTQMSRKGCSPNYVTYRVL 560



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 98/383 (25%), Positives = 176/383 (45%), Gaps = 62/383 (16%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   +V  AH+L   M S G  PN + Y  LI G+C+ G++D A +VF +M  CG 
Sbjct: 386 VDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGY 445

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           LP+  TY+ L+  + +     R ++ M  L + +K+    + N   +  ++D LC     
Sbjct: 446 LPSVHTYTSLIDRMFKDG---RLDLAMKVLSQMLKDS--CTPNVVTYTAMIDGLC----- 495

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                                         R G +  A +++ +M ++G +P++V+Y ++
Sbjct: 496 ------------------------------RIGESEKALKLLSLMEEKGCSPNVVTYTAL 525

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GL K G    +  L  +  + G  P+  TY+VL+  LC    L+KAR +L  M     
Sbjct: 526 IDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEM----- 580

Query: 241 VDRTRICNIYLRAL-CLI----KNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 295
             +      YL+   C I    K+    L +L  M      P       +I+ F K GR+
Sbjct: 581 --KQTYWPKYLQGYRCAIQGFSKSFIASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRL 638

Query: 296 EEALKVLNDMVAGKFCAPDAVT-----FTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG 350
           E A+++  +M+      P +V      + ++I  L    +++EA   LY  M +RG+ P 
Sbjct: 639 EIAMELHKEMME----VPSSVKTDNDMYASLIQALCLASQVEEAFR-LYSEMTRRGFVPE 693

Query: 351 IVTYNAVLRGLFRLRRVEEAKEV 373
           +  +  +++GL  +++ +EA ++
Sbjct: 694 LSVFVCLIKGLVEVKKWDEALQL 716



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 78/365 (21%), Positives = 152/365 (41%), Gaps = 40/365 (10%)

Query: 165 MRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLE-------------------------E 199
           M + G      +     H LCK G    A  ++E                         E
Sbjct: 1   MSESGFCMDRFTVGCFAHALCKEGRWADALDMIEREDFKLDTVLCTHMISGLMEASYFDE 60

Query: 200 GIQFGY-------LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLR 252
            + F +       +P+  TY+ L+ G   +  L   ++++  M+++       + N  + 
Sbjct: 61  AMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVH 120

Query: 253 ALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE------ALKVLNDMV 306
           + C  K+      +L  M    C P  +  N  I   C   ++        A K+  +M+
Sbjct: 121 SYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEML 180

Query: 307 AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 366
           A   C  + V        L  VG+  +A  L+ ++M ++G+ P   TY+ V+  L    +
Sbjct: 181 AAN-CVLNKVNVANFARCLCGVGKFDKAFQLIKEMM-RKGFVPDTSTYSKVITFLCHATK 238

Query: 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAA 426
           VE+A  +F  M  +GV  D  TY I+ID  C++  +++A+  ++++           Y A
Sbjct: 239 VEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTA 298

Query: 427 MIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG 486
           +I    ++ ++ +A    + +VD+G  PN V Y  ++DG CK     +A+++  ++    
Sbjct: 299 LIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTS 358

Query: 487 LNPDA 491
            + D+
Sbjct: 359 DSADS 363



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 59/261 (22%), Positives = 106/261 (40%), Gaps = 46/261 (17%)

Query: 278 DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNL 337
           D  T+    +  CK GR  +AL    DM+  +    D V  T +I GL+      EA++ 
Sbjct: 9   DRFTVGCFAHALCKEGRWADAL----DMIEREDFKLDTVLCTHMISGLMEASYFDEAMSF 64

Query: 338 LYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADST---------- 387
           L++ M      P +VTY  +L G  + +++   K + N M+  G   + +          
Sbjct: 65  LHR-MRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYC 123

Query: 388 -------------------------TYAIVIDGLC------ESNQLDEAKRFWDDIVWPS 416
                                     Y I I  +C        + LD A++ + +++  +
Sbjct: 124 NEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAAN 183

Query: 417 NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAY 476
            + +    A   + LC  GK  +A   + E++  G  P+   Y+ VI   C  +   +A+
Sbjct: 184 CVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAF 243

Query: 477 QILREMRKNGLNPDAVTWRIL 497
            + +EM+  G+ PD  T+ IL
Sbjct: 244 LLFQEMKMVGVTPDVYTYTIL 264


>gi|302799687|ref|XP_002981602.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
 gi|300150768|gb|EFJ17417.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
          Length = 628

 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 133/490 (27%), Positives = 242/490 (49%), Gaps = 30/490 (6%)

Query: 13  AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVR 72
           A++ F  M+ RG+ P+  +Y+ ++ G C+ GE+D A ++  ++R  GV  N +TYSV++ 
Sbjct: 57  AYEKFQQMQRRGYPPDDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVID 116

Query: 73  GVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQ 132
           G  +   V+ A     ++++ M        +   F +L+  LC    ++E F + E M +
Sbjct: 117 GCCKASRVDDA----LEIFKTMSAGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAK 172

Query: 133 GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG---- 188
                   +   ++D LC++GR   A R+   M ++   P LV+Y S V GLCK      
Sbjct: 173 AGCEPNVISYSTLLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAE 232

Query: 189 GCMRAYQLLEEGIQFGYLP-------------SEHTYKVLVEGLCGESDLEKARKVLQFM 235
            C    +++ +G +   +              +E     ++E LC    L++A K  + M
Sbjct: 233 ACDCCRKMVTKGSKADAVAFSTVIGILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEM 292

Query: 236 LSKKDVDRTRICNIYLRALCLIKNPTELLNVLVF-----MLQTQCQPDVITLNTVINGFC 290
           +S+       + N  + A+C  K   +   VL+F     M +  C P++ T N +++  C
Sbjct: 293 ISRNHPPSAELFNTLIHAVCKSKRLPD--GVLLFQRMKSMKEFYCPPNLETYNIMVDNLC 350

Query: 291 KMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG 350
           K  +++EA +++N+M A    +PD VT++ ++ GL  +G++  A +LL + M + G  P 
Sbjct: 351 KAKQLDEAQELVNEM-ANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEE-MSKEGVFPD 408

Query: 351 IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD 410
             T  ++L  L +  +V+ A      M   G   D  TY  ++DGLC++ ++DEA  F  
Sbjct: 409 SFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLA 468

Query: 411 DIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLS 470
            +V      D + Y  +I  LCRSG+   A     E+V  GV P+ V Y+ ++DG  +  
Sbjct: 469 KMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLDGLARNG 528

Query: 471 MKREAYQILR 480
           ++  A ++L+
Sbjct: 529 LEDLALELLK 538



 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 137/513 (26%), Positives = 238/513 (46%), Gaps = 33/513 (6%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRH-CGVLP 62
           LC    + +A +L   ++  G   NV++Y+ +I G C+   +D A ++F  M    G +P
Sbjct: 83  LCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEIFKTMSAGGGCVP 142

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           + +T++ L++G+     +  A    F L+E M  +     N  +++ L+D LC+ G ++E
Sbjct: 143 DVVTFNSLLKGLCSGERMSEA----FVLFEYMA-KAGCEPNVISYSTLLDGLCKAGRLDE 197

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
             R+ E+M +   V +  A    +  LC++ R   A      M  +G     V++++++ 
Sbjct: 198 ACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIG 257

Query: 183 GLCKHGGCMRAY-----------------QLLEEGIQFGYLPSEHTYKVLVEGLCGESDL 225
            LCK G    A                  +  EE I   + PS   +  L+  +C    L
Sbjct: 258 ILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRL 317

Query: 226 EKARKVLQFMLSKKDV---DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITL 282
                + Q M S K+          NI +  LC  K   E   ++  M      PDV+T 
Sbjct: 318 PDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTY 377

Query: 283 NTVINGFCKMGRIEEALKVLNDMVA-GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQV 341
           + +++G CK+G+++ A  +L +M   G F  PD+ T  +I+  L   G++  AL+ L + 
Sbjct: 378 SALVDGLCKLGKLDRACDLLEEMSKEGVF--PDSFTDASILNALSKAGKVDYALSHL-ET 434

Query: 342 MPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ 401
           M  RG +P +VTYN +L GL +  R++EA      M+      D  +Y I+I  LC S Q
Sbjct: 435 MKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQ 494

Query: 402 LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNV 461
              A   + ++V    + D  +Y +++ GL R+G    A+  L     S   P+ V + +
Sbjct: 495 AAGAHAIFQEMVKRGVLPDTVLYHSLLDGLARNGLEDLALELLKT---SLCKPDFVMHKM 551

Query: 462 VIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
           V+DG CK     +A +++  M   G   DA T+
Sbjct: 552 VVDGLCKAGKAEDACEVVERMADAGFPADAFTY 584



 Score =  174 bits (442), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 132/455 (29%), Positives = 219/455 (48%), Gaps = 26/455 (5%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R+ EA  LF  M   G  PNV+SY+TL+ G C+ G +D A ++++EM     +P+
Sbjct: 154 LCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEACRLWEEMVEKSCVPD 213

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNA------------AFANLV 111
            + Y+  V G+ +   V  A     K+  +  + + ++ +              A   ++
Sbjct: 214 LVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIGILCKKGHAEEAQNQMI 273

Query: 112 DSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGL- 170
           + LCR G ++E  +  E+M              +I ++C+S R      V+   R + + 
Sbjct: 274 EHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDG--VLLFQRMKSMK 331

Query: 171 ----TPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLE 226
                P+L +YN +V  LCK      A +L+ E   +G  P   TY  LV+GLC    L+
Sbjct: 332 EFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLD 391

Query: 227 KARKVLQFMLSKKDVDRTRICNI-YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTV 285
           +A  +L+ M SK+ V      +   L AL         L+ L  M      PD++T NT+
Sbjct: 392 RACDLLEEM-SKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTL 450

Query: 286 INGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQR 345
           ++G CK GRI+EA+  L  MVA K C PD  ++T II  L   G+   A + ++Q M +R
Sbjct: 451 LDGLCKAGRIDEAITFLAKMVAAK-CTPDVFSYTIIITALCRSGQAAGA-HAIFQEMVKR 508

Query: 346 GYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA 405
           G  P  V Y+++L GL R    + A E+    L      D   + +V+DGLC++ + ++A
Sbjct: 509 GVLPDTVLYHSLLDGLARNGLEDLALELLKTSL---CKPDFVMHKMVVDGLCKAGKAEDA 565

Query: 406 KRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEA 440
               + +       D + Y  +++GL + GK+ +A
Sbjct: 566 CEVVERMADAGFPADAFTYINVVRGLRKLGKVDKA 600



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 116/216 (53%), Gaps = 2/216 (0%)

Query: 277 PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALN 336
           PD  T + V+ G CK G +++A ++L  +        + +T++ +I G     R+ +AL 
Sbjct: 71  PDDFTYSIVLRGLCKAGELDKAKELLGQLRESGV-KLNVITYSVVIDGCCKASRVDDALE 129

Query: 337 LLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 396
           +   +    G  P +VT+N++L+GL    R+ EA  +F  M   G   +  +Y+ ++DGL
Sbjct: 130 IFKTMSAGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGL 189

Query: 397 CESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNI 456
           C++ +LDEA R W+++V  S + D   Y + + GLC++ ++ EA     ++V  G   + 
Sbjct: 190 CKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADA 249

Query: 457 VCYNVVIDGACKLSMKREAY-QILREMRKNGLNPDA 491
           V ++ VI   CK     EA  Q++  + ++G+  +A
Sbjct: 250 VAFSTVIGILCKKGHAEEAQNQMIEHLCRSGMLDEA 285



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 70/235 (29%), Positives = 123/235 (52%), Gaps = 8/235 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   ++ EA +L  +M + G  P+VV+Y+ L+ G C+ G++D A  + +EM   GV
Sbjct: 346 VDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGV 405

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+S T + ++  + +   V+ A   +  +  R    + ++ N      L+D LC+ G +
Sbjct: 406 FPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYN-----TLLDGLCKAGRI 460

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E       M   K   + F+   +I +LCRSG+  GA  +   M KRG+ P  V Y+S+
Sbjct: 461 DEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSL 520

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM 235
           + GL ++G    A +LL+  +     P    +K++V+GLC     E A +V++ M
Sbjct: 521 LDGLARNGLEDLALELLKTSL---CKPDFVMHKMVVDGLCKAGKAEDACEVVERM 572



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 87/181 (48%), Gaps = 1/181 (0%)

Query: 318 FTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCM 377
           +T +   L ++G+I   + L   +  Q+GY   + TYN  L  L +    + A E F  M
Sbjct: 5   YTVVGEVLRHLGKISTIVRLFDWLGRQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQM 64

Query: 378 LGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKI 437
              G   D  TY+IV+ GLC++ +LD+AK     +       +   Y+ +I G C++ ++
Sbjct: 65  QRRGYPPDDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRV 124

Query: 438 HEAVHFLYEL-VDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRI 496
            +A+     +    G  P++V +N ++ G C      EA+ +   M K G  P+ +++  
Sbjct: 125 DDALEIFKTMSAGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYST 184

Query: 497 L 497
           L
Sbjct: 185 L 185



 Score = 40.8 bits (94), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 32/134 (23%), Positives = 53/134 (39%), Gaps = 32/134 (23%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTL---------------------------- 35
           LC   +   AH +F +M  RG +P+ V Y +L                            
Sbjct: 489 LCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLDGLARNGLEDLALELLKTSLCKPDFVM 548

Query: 36  ----IHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLW 91
               + G C+ G+ + A +V + M   G   ++ TY  +VRG+ +   V++A  L+    
Sbjct: 549 HKMVVDGLCKAGKAEDACEVVERMADAGFPADAFTYINVVRGLRKLGKVDKARQLVDDAS 608

Query: 92  ERMKEEEDLSVNNA 105
           E     E LS+  A
Sbjct: 609 ETHTSVERLSMEKA 622


>gi|449462477|ref|XP_004148967.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 597

 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 138/497 (27%), Positives = 238/497 (47%), Gaps = 79/497 (15%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC ++RVGE   +   +  RG++P++V+YTTLI G C    +  A  +F  M+  G 
Sbjct: 138 LNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKLGC 197

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN++TY  L++G+ RT ++  A     KL + M    D S+    F  +V S       
Sbjct: 198 TPNAITYGTLMKGLCRTGNISIA----LKLHQEMLN--DSSLYGINFKPVVIS------- 244

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
              + I                  +ID+LC+  R   A  +   M+ +G+TP+++SY S+
Sbjct: 245 ---YSI------------------IIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSL 283

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +           A +L  E +  G  P+  T+ VL++ LC E  + +A+ +L+ M+ +  
Sbjct: 284 MWE--------EAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGI 335

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           V                                   P+++T N++I GFC +G +  A +
Sbjct: 336 V-----------------------------------PNLLTYNSLIEGFCLVGDLNSARE 360

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +   M   K C PD + +T +I G     +++EA+ L Y  M Q G  P + TY A+L G
Sbjct: 361 LFVSM-PSKGCEPDVICYTVLINGYCKTSKVEEAMKL-YNGMLQVGKRPDVKTYGALLTG 418

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           LF+  +V +AK++F  M   G+  D   Y I ++GLC++  L EA   ++ +   +   D
Sbjct: 419 LFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLD 478

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              +  +I GLC++GK+  A     +L    + P++V YN++I   C+     +A  + +
Sbjct: 479 IECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQ 538

Query: 481 EMRKNGLNPDAVTWRIL 497
           +M KNG  PD +T+  L
Sbjct: 539 KMEKNGCTPDKITYATL 555



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 119/468 (25%), Positives = 228/468 (48%), Gaps = 27/468 (5%)

Query: 40  CRTGEMDV--AYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEE 97
           C+TG +    A++ F  M +    P   +++ L+ G+ + +   +    +F L+ +M+  
Sbjct: 70  CKTGNITAIQAFQFFHLMMYSNPTPPLSSFTHLLSGLAKIKHYSQ----VFYLYNQMRLS 125

Query: 98  EDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHG 157
             +S +      L++ LC    V E   +   + +   + +      +I  LC   R   
Sbjct: 126 -GISPDCCTLNILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISK 184

Query: 158 ASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE--------GIQFGYLPSE 209
           A+ +   M+K G TP+ ++Y +++ GLC+ G    A +L +E        GI F   P  
Sbjct: 185 AALLFTRMQKLGCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFK--PVV 242

Query: 210 HTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVF 269
            +Y ++++ LC +   ++AR + + M   + +  T I    L    + +    L N    
Sbjct: 243 ISYSIIIDALCKDRREDEARDLFEEM-KVQGMTPTVISYTSL----MWEEAKRLFNE--- 294

Query: 270 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG 329
           M+    QP+V+T N +I+  CK G++ EA  +L  M+  +   P+ +T+ ++I G   VG
Sbjct: 295 MVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQ-RGIVPNLLTYNSLIEGFCLVG 353

Query: 330 RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTY 389
            +  A  L +  MP +G  P ++ Y  ++ G  +  +VEEA +++N ML +G   D  TY
Sbjct: 354 DLNSAREL-FVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTY 412

Query: 390 AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449
             ++ GL +  ++ +AK+ +  +       D Y+Y   + GLC++G + EA+    +L  
Sbjct: 413 GALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKS 472

Query: 450 SGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
             +  +I C+N +IDG CK      A+++  ++ +  L PD VT+ I+
Sbjct: 473 YNIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNIM 520



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 101/385 (26%), Positives = 167/385 (43%), Gaps = 50/385 (12%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   R  EA  LF +MK +G  P V+SYT+L+         + A ++F+EM + GV
Sbjct: 249 IDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLM--------WEEAKRLFNEMVNQGV 300

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +T++V                                        L+D LC+EG V
Sbjct: 301 QPNVVTFNV----------------------------------------LIDVLCKEGKV 320

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E   + E M Q   V        +I+  C  G  + A  +   M  +G  P ++ Y  +
Sbjct: 321 IEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVL 380

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++G CK      A +L    +Q G  P   TY  L+ GL     +  A+K+   M     
Sbjct: 381 INGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGI 440

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                I  I+L  LC      E + +   +     + D+   N +I+G CK G++E A +
Sbjct: 441 PGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWE 500

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +   +   +   PD VT+  +I      G++ +A N+L+Q M + G +P  +TY  ++RG
Sbjct: 501 LFEKLPQEEL-QPDVVTYNIMIHEFCRGGQVVKA-NILFQKMEKNGCTPDKITYATLIRG 558

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVAD 385
            F  +++E+  E+ + M+   V  D
Sbjct: 559 FFESKKLEKVVELLHMMVQRDVSLD 583



 Score = 47.4 bits (111), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 68/169 (40%), Gaps = 35/169 (20%)

Query: 338 LYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLC 397
            + +M     +P + ++  +L GL +++   +   ++N M   G+  D  T  I+++ LC
Sbjct: 83  FFHLMMYSNPTPPLSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGISPDCCTLNILLNCLC 142

Query: 398 ESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIV 457
             N++ E                     A++ G+ R G I                P+IV
Sbjct: 143 NVNRVGEG-------------------LAVMAGILRRGYI----------------PDIV 167

Query: 458 CYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
            Y  +I G C      +A  +   M+K G  P+A+T+  L K     GN
Sbjct: 168 TYTTLIKGLCMEHRISKAALLFTRMQKLGCTPNAITYGTLMKGLCRTGN 216


>gi|225435038|ref|XP_002281336.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900 [Vitis vinifera]
          Length = 900

 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 127/522 (24%), Positives = 247/522 (47%), Gaps = 41/522 (7%)

Query: 10  VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSV 69
           +G A  L   +K  G  P++  Y  LI+  C+ G++D A  +F+ M H G+ PN +TYS+
Sbjct: 336 IGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSI 395

Query: 70  LVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAED 129
           L+    +   ++ A   + K+      E  +      +++L+   C+ G +     + ++
Sbjct: 396 LIDSFCKRGKLDVALHFLGKM-----TEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDE 450

Query: 130 MPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG 189
           M              +I   C+ G  H A R+ + M  +G++P+  ++ +++ GLC    
Sbjct: 451 MIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANR 510

Query: 190 CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNI 249
              A +L  E +++  +P+E TY VL+EG C E +  +A ++L  M+ K  V  T     
Sbjct: 511 MAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRP 570

Query: 250 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK 309
            +  LC     +E    +  +   Q + + +  + +++G+CK GR+++AL    +M+ G+
Sbjct: 571 LISGLCSTGRVSEAREFMNDLQGEQQKLNEMCFSALLHGYCKEGRLDDALDACREML-GR 629

Query: 310 FCAPDAVTFTTIIFGLLNVGRIQEALNLLYQ----------------------------- 340
             A D V ++ +I+G+L     +  ++LL Q                             
Sbjct: 630 GVAMDLVCYSVLIYGILRQQDRRSIIDLLKQMHDQGLRPDNVLYTTMIDANAKAGNLKMA 689

Query: 341 -----VMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG 395
                +M   G  P +VTY A++ GL ++  +++A+ +   ML    + +  TYA  +D 
Sbjct: 690 FGLWDIMVSEGCLPNVVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDY 749

Query: 396 LCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN 455
           L     +++A +   D++    + +   Y  +I+G C+ G+I EA   L  ++DSG++P+
Sbjct: 750 LTSEGNIEKAIQL-HDVLLEGFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPD 808

Query: 456 IVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            + Y+ +I   C+    +EA ++   M   G+NPD V +  L
Sbjct: 809 CISYSTIIYEYCRRGDLKEAIKLWESMLNRGVNPDTVAYNFL 850



 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 141/520 (27%), Positives = 248/520 (47%), Gaps = 27/520 (5%)

Query: 4   LCGLSRVGE---AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           L GL R+ +   A  LF ++ S G  P+V  YT ++   C   +   A +V   M   G 
Sbjct: 187 LNGLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLCELKDFIRAREVIGRMESSGC 246

Query: 61  LPNSLTYSVLVRGVLRTRDVERA----NVLMFKLWERMKEEEDLSVNNAAFANLVDSLCR 116
             +  TY+V +RG+ + + V  A    N+L +K          L  +   +  LV  LC+
Sbjct: 247 DLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYK---------GLRADVGTYCTLVLGLCK 297

Query: 117 EGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVS 176
                    +  +M +   V  E A  +++D L + G    A  +V  ++K G+ PSL  
Sbjct: 298 VEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFV 357

Query: 177 YNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFML 236
           YN++++ +CK G    A  L       G  P++ TY +L++  C    L+ A   L F+ 
Sbjct: 358 YNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVA---LHFLG 414

Query: 237 SKKDVDRTRICNIY---LRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMG 293
              +V        Y   +   C +       ++   M+    +P+V+   ++I+G+CK G
Sbjct: 415 KMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEG 474

Query: 294 RIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVT 353
            +  A ++ ++M  GK  +P+  TFT +I GL +  R+ EA N L+  M +    P  VT
Sbjct: 475 ELHNAFRLYHEM-TGKGISPNTYTFTALISGLCHANRMAEA-NKLFGEMVEWNVIPNEVT 532

Query: 354 YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413
           YN ++ G  +      A E+ + M+  G+V D+ TY  +I GLC + ++ EA+ F +D+ 
Sbjct: 533 YNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQ 592

Query: 414 WPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKR 473
                 +   ++A++ G C+ G++ +A+    E++  GV  ++VCY+V+I G  +   +R
Sbjct: 593 GEQQKLNEMCFSALLHGYCKEGRLDDALDACREMLGRGVAMDLVCYSVLIYGILRQQDRR 652

Query: 474 EAYQILREMRKNGLNPDAVTWRILDKLHGNRGN---DFGL 510
               +L++M   GL PD V +  +   +   GN    FGL
Sbjct: 653 SIIDLLKQMHDQGLRPDNVLYTTMIDANAKAGNLKMAFGL 692



 Score =  195 bits (495), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 136/538 (25%), Positives = 259/538 (48%), Gaps = 47/538 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ +C   ++ EA  LF +M  +G  PN V+Y+ LI  +C+ G++DVA     +M   G+
Sbjct: 362 INSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGI 421

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
                 YS L+ G  +   +  A  L  ++         L  N   + +L+   C+EG +
Sbjct: 422 KATVYPYSSLISGHCKLGKLRAAKSLFDEMIA-----NGLKPNVVIYTSLISGYCKEGEL 476

Query: 121 NEVFRIAEDMPQGKSVNEE-FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           +  FR+  +M  GK ++   +    +I  LC + R   A+++   M +  + P+ V+YN 
Sbjct: 477 HNAFRLYHEM-TGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNV 535

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++ G CK G  +RA++LL+E ++ G +P  +TY+ L+ GLC    + +AR+ +  +  ++
Sbjct: 536 LIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQ 595

Query: 240 D-----------------------VDRTR-----------IC-NIYLRALCLIKNPTELL 264
                                   +D  R           +C ++ +  +   ++   ++
Sbjct: 596 QKLNEMCFSALLHGYCKEGRLDDALDACREMLGRGVAMDLVCYSVLIYGILRQQDRRSII 655

Query: 265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 324
           ++L  M     +PD +   T+I+   K G ++ A  + + MV+ + C P+ VT+T +I G
Sbjct: 656 DLLKQMHDQGLRPDNVLYTTMIDANAKAGNLKMAFGLWDIMVS-EGCLPNVVTYTALING 714

Query: 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 384
           L  +G + +A  LL + M      P   TY   L  L     +E+A ++ + +L  G +A
Sbjct: 715 LCKIGLMDKA-ELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLHDVLLE-GFLA 772

Query: 385 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFL 444
           ++ TY I+I G C+  ++ EA     +++      D   Y+ +I   CR G + EA+   
Sbjct: 773 NTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLW 832

Query: 445 YELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
             +++ GV P+ V YN +I G C      +A+++  +M + G+ P+  T+  L  +HG
Sbjct: 833 ESMLNRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGVKPNRATYNSL--IHG 888



 Score =  192 bits (487), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 128/466 (27%), Positives = 227/466 (48%), Gaps = 8/466 (1%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C L ++  A  LF +M + G  PNVV YT+LI GYC+ GE+  A++++ EM   G+ PN+
Sbjct: 436 CKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNT 495

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
            T++ L+ G+     +  AN    KL+  M E  ++  N   +  L++  C+EG     F
Sbjct: 496 YTFTALISGLCHANRMAEAN----KLFGEMVEW-NVIPNEVTYNVLIEGHCKEGNTVRAF 550

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
            + ++M +   V + +    +I  LC +GR   A   +  ++      + + +++++HG 
Sbjct: 551 ELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEMCFSALLHGY 610

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
           CK G    A     E +  G       Y VL+ G+  + D      +L+ M  +      
Sbjct: 611 CKEGRLDDALDACREMLGRGVAMDLVCYSVLIYGILRQQDRRSIIDLLKQMHDQGLRPDN 670

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
            +    + A     N      +   M+   C P+V+T   +ING CK+G +++A  +  +
Sbjct: 671 VLYTTMIDANAKAGNLKMAFGLWDIMVSEGCLPNVVTYTALINGLCKIGLMDKAELLCRE 730

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
           M+A     P+  T+   +  L + G I++A+ L + V+ + G+    VTYN ++RG  +L
Sbjct: 731 MLASN-SLPNQNTYACFLDYLTSEGNIEKAIQL-HDVLLE-GFLANTVTYNILIRGFCKL 787

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY 424
            R++EA EV   M+  G+  D  +Y+ +I   C    L EA + W+ ++      D   Y
Sbjct: 788 GRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRGVNPDTVAY 847

Query: 425 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLS 470
             +I G C +G++ +A     +++  GV PN   YN +I G C +S
Sbjct: 848 NFLIYGCCVTGELTKAFELRDDMMRRGVKPNRATYNSLIHGTCLMS 893



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 97/362 (26%), Positives = 176/362 (48%), Gaps = 4/362 (1%)

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
           +I +  ++ R      VV +M   G+ P + + + +++GL +      A  L +E +  G
Sbjct: 151 LIQTYVQNRRELDGLVVVRLMMDCGILPQIRTLSGVLNGLIRIRQFRMALHLFDEIVSSG 210

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL 264
             P  + Y  +V  LC   D  +AR+V+  M S          N+++R LC  +   E +
Sbjct: 211 LRPDVYVYTAVVRSLCELKDFIRAREVIGRMESSGCDLSVATYNVFIRGLCKNQRVWEAV 270

Query: 265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 324
            +   +     + DV T  T++ G CK+   E   +++N+M+   F  P     + ++ G
Sbjct: 271 EIKNLLSYKGLRADVGTYCTLVLGLCKVEEFEAGEEMMNEMIEFGF-VPSEAAVSNLVDG 329

Query: 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 384
           L   G I  A +L+ +V  + G +P +  YNA++  + +  +++EA+ +FN M   G+  
Sbjct: 330 LRKKGNIGSAFDLVNKV-KKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFP 388

Query: 385 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFL 444
           +  TY+I+ID  C+  +LD A  F   +         Y Y+++I G C+ GK+  A    
Sbjct: 389 NDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLF 448

Query: 445 YELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK--LHG 502
            E++ +G+ PN+V Y  +I G CK      A+++  EM   G++P+  T+  L     H 
Sbjct: 449 DEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHA 508

Query: 503 NR 504
           NR
Sbjct: 509 NR 510



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 82/326 (25%), Positives = 141/326 (43%), Gaps = 33/326 (10%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   RV EA +   D++      N + ++ L+HGYC+ G +D A     EM   GV  +
Sbjct: 575 LCSTGRVSEAREFMNDLQGEQQKLNEMCFSALLHGYCKEGRLDDALDACREMLGRGVAMD 634

Query: 64  SLTYSVLVRGVLRTRD---------------VERANVL----------------MFKLWE 92
            + YSVL+ G+LR +D               +   NVL                 F LW+
Sbjct: 635 LVCYSVLIYGILRQQDRRSIIDLLKQMHDQGLRPDNVLYTTMIDANAKAGNLKMAFGLWD 694

Query: 93  RMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRS 152
            M  E  L  N   +  L++ LC+ G +++   +  +M    S+  +      +D L   
Sbjct: 695 IMVSEGCLP-NVVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSE 753

Query: 153 GRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTY 212
           G    A ++  V+ + G   + V+YN ++ G CK G    A ++L   I  G  P   +Y
Sbjct: 754 GNIEKAIQLHDVLLE-GFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISY 812

Query: 213 KVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQ 272
             ++   C   DL++A K+ + ML++     T   N  +   C+    T+   +   M++
Sbjct: 813 STIIYEYCRRGDLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMR 872

Query: 273 TQCQPDVITLNTVINGFCKMGRIEEA 298
              +P+  T N++I+G C M  +   
Sbjct: 873 RGVKPNRATYNSLIHGTCLMSSVSST 898



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 63/141 (44%)

Query: 354 YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413
           ++ +++   + RR  +   V   M+  G++    T + V++GL    Q   A   +D+IV
Sbjct: 148 FDLLIQTYVQNRRELDGLVVVRLMMDCGILPQIRTLSGVLNGLIRIRQFRMALHLFDEIV 207

Query: 414 WPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKR 473
                 D YVY A+++ LC       A   +  +  SG   ++  YNV I G CK     
Sbjct: 208 SSGLRPDVYVYTAVVRSLCELKDFIRAREVIGRMESSGCDLSVATYNVFIRGLCKNQRVW 267

Query: 474 EAYQILREMRKNGLNPDAVTW 494
           EA +I   +   GL  D  T+
Sbjct: 268 EAVEIKNLLSYKGLRADVGTY 288


>gi|218196467|gb|EEC78894.1| hypothetical protein OsI_19266 [Oryza sativa Indica Group]
 gi|222630938|gb|EEE63070.1| hypothetical protein OsJ_17878 [Oryza sativa Japonica Group]
          Length = 939

 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 136/525 (25%), Positives = 253/525 (48%), Gaps = 36/525 (6%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C   RV +A +   +M+  G   N+V+Y  ++  YC  G  + A ++ + ++  G+ PN 
Sbjct: 229 CRDGRVAQAVEFVEEMEGMGLEVNLVAYHAVMDCYCGMGWTEDARRILESLQRKGLSPNV 288

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           +TY++LV+G  +   +E A     ++ + MKE  D+ V+  A+  +++  C+ G +++  
Sbjct: 289 VTYTLLVKGYCKDGRMEEAE----RVVKEMKETGDIVVDEVAYGMMINGYCQRGRMDDAT 344

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
           R+  +M         F    MI+ LC+ GR     +V+  M   G+ P   SYN+++ G 
Sbjct: 345 RVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGY 404

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
           C+ G   +A+++    ++ G   +  TY  L++G C    ++ A + L F++ K+ V   
Sbjct: 405 CREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDDALR-LWFLMLKRGVAPN 463

Query: 245 RI-CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
            I C+  L  L       + LN+    L      +VIT NTVING CK+GR+ EA ++L+
Sbjct: 464 EISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVINGLCKIGRMAEAEELLD 523

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            M   + C PD++T+ T+  G   +G++  A +L+ + M   G++P +  +N+ + G F 
Sbjct: 524 RMKELR-CPPDSLTYRTLFDGYCKLGQLGTATHLMNK-MEHLGFAPSVEMFNSFITGHFI 581

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
            ++  +  ++ + M   G+  +  TY  +I G C+   L EA   + ++V      + ++
Sbjct: 582 AKQWHKVNDIHSEMSARGLSPNLVTYGALIAGWCKEGNLHEACNLYFEMVNNGMNPNVFI 641

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNI--------------------------V 457
            +A++    + GK+ EA   L +LV+  + P                            V
Sbjct: 642 CSALMSCFYKEGKVDEANLVLQKLVNIDMIPGCSISTIEIDKISHVVDTIADGNPHSANV 701

Query: 458 CYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
            +NV+I G CK     +A  +   +R     PD  T+  L  +HG
Sbjct: 702 MWNVIIFGLCKSGRIADAKSLFESLRNKRFLPDNFTYSSL--IHG 744



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 127/476 (26%), Positives = 231/476 (48%), Gaps = 14/476 (2%)

Query: 11  GEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVL 70
           G A  ++  M+  G +P+  +   +   YCR G +  A +  +EM   G+  N + Y  +
Sbjct: 200 GMAAMVYGQMRIAGVLPDEFTVAIMAKAYCRDGRVAQAVEFVEEMEGMGLEVNLVAYHAV 259

Query: 71  VR---GVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIA 127
           +    G+  T D  R       + E + + + LS N   +  LV   C++G + E  R+ 
Sbjct: 260 MDCYCGMGWTEDARR-------ILESL-QRKGLSPNVVTYTLLVKGYCKDGRMEEAERVV 311

Query: 128 EDMPQ-GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK 186
           ++M + G  V +E A G MI+  C+ GR   A+RV   MR  G+  +L  YN++++GLCK
Sbjct: 312 KEMKETGDIVVDEVAYGMMINGYCQRGRMDDATRVRNEMRDAGIHVNLFVYNTMINGLCK 371

Query: 187 HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRI 246
            G      ++L+E    G  P +++Y  L++G C E  + KA ++ + M+       T  
Sbjct: 372 LGRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLT 431

Query: 247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV 306
            N  L+  C +    + L +   ML+    P+ I+ +T+++G  K G+ E+AL +  + +
Sbjct: 432 YNTLLKGFCSLHAIDDALRLWFLMLKRGVAPNEISCSTLLDGLFKAGKTEQALNLWKETL 491

Query: 307 AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 366
           A +  A + +TF T+I GL  +GR+ EA  LL ++   R   P  +TY  +  G  +L +
Sbjct: 492 A-RGLAKNVITFNTVINGLCKIGRMAEAEELLDRMKELR-CPPDSLTYRTLFDGYCKLGQ 549

Query: 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAA 426
           +  A  + N M  +G       +   I G   + Q  +      ++       +   Y A
Sbjct: 550 LGTATHLMNKMEHLGFAPSVEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGA 609

Query: 427 MIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
           +I G C+ G +HEA +  +E+V++G+ PN+   + ++    K     EA  +L+++
Sbjct: 610 LIAGWCKEGNLHEACNLYFEMVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQKL 665



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 133/530 (25%), Positives = 242/530 (45%), Gaps = 39/530 (7%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC L R+ E  K+  +M+  G  P+  SY TLI GYCR G M  A+++   M   G+
Sbjct: 366 INGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGL 425

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
              +LTY+ L++G      ++ A  L F + +R      ++ N  + + L+D L + G  
Sbjct: 426 AATTLTYNTLLKGFCSLHAIDDALRLWFLMLKR-----GVAPNEISCSTLLDGLFKAGKT 480

Query: 121 NEVFRI-AEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
            +   +  E + +G + N       +I+ LC+ GR   A  ++  M++    P  ++Y +
Sbjct: 481 EQALNLWKETLARGLAKNV-ITFNTVINGLCKIGRMAEAEELLDRMKELRCPPDSLTYRT 539

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           +  G CK G    A  L+ +    G+ PS   +   + G        K   +   M ++ 
Sbjct: 540 LFDGYCKLGQLGTATHLMNKMEHLGFAPSVEMFNSFITGHFIAKQWHKVNDIHSEMSARG 599

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                      +   C   N  E  N+   M+     P+V   + +++ F K G+++EA 
Sbjct: 600 LSPNLVTYGALIAGWCKEGNLHEACNLYFEMVNNGMNPNVFICSALMSCFYKEGKVDEAN 659

Query: 300 KVLN-----DMVAGKFCA--------------------PDA--VTFTTIIFGLLNVGRIQ 332
            VL      DM+ G  C+                    P +  V +  IIFGL   GRI 
Sbjct: 660 LVLQKLVNIDMIPG--CSISTIEIDKISHVVDTIADGNPHSANVMWNVIIFGLCKSGRIA 717

Query: 333 EALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIV 392
           +A +L ++ +  + + P   TY++++ G      ++EA  + + ML  G+  +  TY  +
Sbjct: 718 DAKSL-FESLRNKRFLPDNFTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSL 776

Query: 393 IDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGV 452
           I GLC+S +L  A   ++ +       +   Y  +I   C+ GK  EA     ++V+ G+
Sbjct: 777 IYGLCKSGKLSRAVNLFNKLQSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEGI 836

Query: 453 TPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
            P ++ Y+++I G C      EA ++L +M +N ++P+ +T+  L  +HG
Sbjct: 837 QPTVITYSILIYGLCTQGYMEEAIKLLDQMIENNVDPNYITYCTL--IHG 884



 Score =  174 bits (442), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 130/492 (26%), Positives = 228/492 (46%), Gaps = 28/492 (5%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C L  + +A +L+F M  RG  PN +S +TL+ G  + G+ + A  ++ E    G+  N
Sbjct: 439 FCSLHAIDDALRLWFLMLKRGVAPNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKN 498

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +T++ ++ G+ +   +  A  L+    +RMKE      ++  +  L D  C+ G +   
Sbjct: 499 VITFNTVINGLCKIGRMAEAEELL----DRMKELR-CPPDSLTYRTLFDGYCKLGQLGTA 553

Query: 124 FRIAEDM------PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
             +   M      P  +  N  F  GH I     + + H  + +   M  RGL+P+LV+Y
Sbjct: 554 THLMNKMEHLGFAPSVEMFNS-FITGHFI-----AKQWHKVNDIHSEMSARGLSPNLVTY 607

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
            +++ G CK G    A  L  E +  G  P+      L+     E  +++A  VLQ ++ 
Sbjct: 608 GALIAGWCKEGNLHEACNLYFEMVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQKLV- 666

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
             ++D    C+I    +       ++ +V+  +         +  N +I G CK GRI +
Sbjct: 667 --NIDMIPGCSISTIEI------DKISHVVDTIADGNPHSANVMWNVIIFGLCKSGRIAD 718

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           A  +   +   +F  PD  T++++I G    G I EA +L   VM   G +P I+TYN++
Sbjct: 719 AKSLFESLRNKRFL-PDNFTYSSLIHGCAASGSIDEAFSL-RDVMLSAGLTPNIITYNSL 776

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 417
           + GL +  ++  A  +FN +   G+  +  TY  +ID  C+  +  EA +    +V    
Sbjct: 777 IYGLCKSGKLSRAVNLFNKLQSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEGI 836

Query: 418 IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQ 477
                 Y+ +I GLC  G + EA+  L +++++ V PN + Y  +I G  K     E  +
Sbjct: 837 QPTVITYSILIYGLCTQGYMEEAIKLLDQMIENNVDPNYITYCTLIHGYIKSGNMEEISK 896

Query: 478 ILREMRKNGLNP 489
           +  EM   GL P
Sbjct: 897 LYDEMHIRGLLP 908



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 105/445 (23%), Positives = 206/445 (46%), Gaps = 11/445 (2%)

Query: 62  PNSLTYSVLVRGVLRTRDVERANVLMFKL-------WERMKE-EEDLSVNNAAFANLVDS 113
           P+ ++++ L+  + R R    A  L+  L       +  + E   D + +  +F  L+ +
Sbjct: 98  PSLVSHAQLLHILARARRFHDARALLSSLPPHAEPLFPHLAEVYRDFTFSAVSFDLLLRA 157

Query: 114 LCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPS 173
               G ++    + + M +        +C  +++ L +SG    A+ V   MR  G+ P 
Sbjct: 158 HADAGQLSSALNVFDGMGKVGCRPSLRSCNRLLNKLVQSGDPGMAAMVYGQMRIAGVLPD 217

Query: 174 LVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQ 233
             +   +    C+ G   +A + +EE    G   +   Y  +++  CG    E AR++L+
Sbjct: 218 EFTVAIMAKAYCRDGRVAQAVEFVEEMEGMGLEVNLVAYHAVMDCYCGMGWTEDARRILE 277

Query: 234 FMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQT-QCQPDVITLNTVINGFCKM 292
            +  K          + ++  C      E   V+  M +T     D +    +ING+C+ 
Sbjct: 278 SLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYGMMINGYCQR 337

Query: 293 GRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIV 352
           GR+++A +V N+M        +   + T+I GL  +GR++E   +L Q M   G  P   
Sbjct: 338 GRMDDATRVRNEMRDAGIHV-NLFVYNTMINGLCKLGRMEEVQKVL-QEMEDVGMRPDKY 395

Query: 353 TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI 412
           +YN ++ G  R   + +A E+   M+  G+ A + TY  ++ G C  + +D+A R W  +
Sbjct: 396 SYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDDALRLWFLM 455

Query: 413 VWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMK 472
           +      +    + ++ GL ++GK  +A++   E +  G+  N++ +N VI+G CK+   
Sbjct: 456 LKRGVAPNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVINGLCKIGRM 515

Query: 473 REAYQILREMRKNGLNPDAVTWRIL 497
            EA ++L  M++    PD++T+R L
Sbjct: 516 AEAEELLDRMKELRCPPDSLTYRTL 540



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 94/354 (26%), Positives = 165/354 (46%), Gaps = 18/354 (5%)

Query: 161 VVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE-------------GIQFGYLP 207
            +++ R     PSLVS+  ++H L +      A  LL                +   +  
Sbjct: 87  ALHLFRLAPSRPSLVSHAQLLHILARARRFHDARALLSSLPPHAEPLFPHLAEVYRDFTF 146

Query: 208 SEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVL 267
           S  ++ +L+        L  A  V   M         R CN  L  L    +P     V 
Sbjct: 147 SAVSFDLLLRAHADAGQLSSALNVFDGMGKVGCRPSLRSCNRLLNKLVQSGDPGMAAMVY 206

Query: 268 VFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLN 327
             M      PD  T+  +   +C+ GR+ +A++ + +M  G     + V +  ++     
Sbjct: 207 GQMRIAGVLPDEFTVAIMAKAYCRDGRVAQAVEFVEEM-EGMGLEVNLVAYHAVMDCYCG 265

Query: 328 VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG-VVADS 386
           +G  ++A  +L + + ++G SP +VTY  +++G  +  R+EEA+ V   M   G +V D 
Sbjct: 266 MGWTEDARRIL-ESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDE 324

Query: 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN-YVYAAMIKGLCRSGKIHEAVHFLY 445
             Y ++I+G C+  ++D+A R  +++   + IH N +VY  MI GLC+ G++ E    L 
Sbjct: 325 VAYGMMINGYCQRGRMDDATRVRNEMR-DAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQ 383

Query: 446 ELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
           E+ D G+ P+   YN +IDG C+    R+A+++ R M +NGL    +T+  L K
Sbjct: 384 EMEDVGMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLK 437



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 104/205 (50%), Gaps = 5/205 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R+ +A  LF  ++++  +P+  +Y++LIHG   +G +D A+ + D M   G+ PN
Sbjct: 710 LCKSGRIADAKSLFESLRNKRFLPDNFTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPN 769

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY+ L+ G+ ++  + RA  L  KL     + + +S N   +  L+D  C+EG   E 
Sbjct: 770 IITYNSLIYGLCKSGKLSRAVNLFNKL-----QSKGISPNGITYNTLIDEYCKEGKTTEA 824

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           F++ + M +            +I  LC  G    A +++  M +  + P+ ++Y +++HG
Sbjct: 825 FKLKQKMVEEGIQPTVITYSILIYGLCTQGYMEEAIKLLDQMIENNVDPNYITYCTLIHG 884

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPS 208
             K G      +L +E    G LP+
Sbjct: 885 YIKSGNMEEISKLYDEMHIRGLLPT 909



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 4/94 (4%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D+ C   +  EA KL   M   G  P V++Y+ LI+G C  G M+ A K+ D+M    V
Sbjct: 812 IDEYCKEGKTTEAFKLKQKMVEEGIQPTVITYSILIYGLCTQGYMEEAIKLLDQMIENNV 871

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERM 94
            PN +TY  L+ G +++ ++E  +    KL++ M
Sbjct: 872 DPNYITYCTLIHGYIKSGNMEEIS----KLYDEM 901



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 35/61 (57%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC    + EA KL   M      PN ++Y TLIHGY ++G M+   K++DEM   G+LP 
Sbjct: 850 LCTQGYMEEAIKLLDQMIENNVDPNYITYCTLIHGYIKSGNMEEISKLYDEMHIRGLLPT 909

Query: 64  S 64
           +
Sbjct: 910 N 910


>gi|357494043|ref|XP_003617310.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518645|gb|AET00269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 716

 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 129/493 (26%), Positives = 240/493 (48%), Gaps = 13/493 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   ++        +M+ +G   ++V+Y TL++ YCR G +  A+ + D M   G+
Sbjct: 231 VNALCKDGKLDNVGVYLSEMEEKGVYADLVTYNTLVNAYCRRGLVSEAFGLVDCMAGKGL 290

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEE---DLSVNNAAFANLVDSLCRE 117
            P   TY+ L+ G+ +    ERA        +R+ +E     L  N A F  ++   CR+
Sbjct: 291 KPGLFTYNALINGLCKEGSYERA--------KRVLDEMLGVGLCPNAATFNPMLVESCRK 342

Query: 118 GYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
             V E  R+  +M Q   V +  +   ++    R+G    A      M+  GL P  V Y
Sbjct: 343 EDVWEAERVFNEMLQRGVVPDLISFSSIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIY 402

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
             +++G C++     A ++  E ++ G +    TY  L+ GLC    L+ A ++ + M+ 
Sbjct: 403 TILINGYCRNDDVSGALKMRNEMVERGCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVE 462

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
           +            +   C   N T+ L++   M     +PDV+T NT+++GFCK+G +E+
Sbjct: 463 RGVFPDFYTLTTLIHGYCKDGNMTKALSLFETMTLRSLKPDVVTYNTLMDGFCKVGEMEK 522

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           A ++  DM++ +   P  ++F+ +I G  ++G + EA   L+  M ++G  P +VT N +
Sbjct: 523 AKELWYDMISREI-FPSYISFSILINGFCSLGLVSEAFR-LWDEMKEKGIKPTLVTCNTI 580

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 417
           ++G  R   + +A +  N M+  GV  D  TY  +I+   +    D A    +++     
Sbjct: 581 IKGYLRAGNLSKANDFLNTMISEGVPPDCITYNTLINSFVKEENFDRAFFLINNMEERGL 640

Query: 418 IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQ 477
           + +   Y A++ G  R G++ EA   L++++D G+ P+   Y  +I+G       +EA++
Sbjct: 641 LPNLVTYNAILGGFSRHGRMQEAEMVLHKMIDKGINPDKSTYTSLINGYVSKDNMKEAFR 700

Query: 478 ILREMRKNGLNPD 490
           +  EM + G  PD
Sbjct: 701 VHDEMLQRGFVPD 713



 Score =  188 bits (477), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 129/492 (26%), Positives = 246/492 (50%), Gaps = 19/492 (3%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           ++ E  + F  ++ RG   ++ +   L+    + G +D+A+KV+++    G + N  T +
Sbjct: 169 KLREGSEAFQLLRKRGFCVSINACNALLGAIVKVGWVDLAWKVYEDFVKSGNIVNVYTLN 228

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
           ++V  + +   ++   V + ++     EE+ +  +   +  LV++ CR G V+E F + +
Sbjct: 229 IMVNALCKDGKLDNVGVYLSEM-----EEKGVYADLVTYNTLVNAYCRRGLVSEAFGLVD 283

Query: 129 DMPQGKSVNEE-FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKH 187
            M  GK +    F    +I+ LC+ G    A RV+  M   GL P+  ++N ++   C+ 
Sbjct: 284 CM-AGKGLKPGLFTYNALINGLCKEGSYERAKRVLDEMLGVGLCPNAATFNPMLVESCRK 342

Query: 188 GGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC 247
                A ++  E +Q G +P   ++  +V       +L +A    + M     V  T I 
Sbjct: 343 EDVWEAERVFNEMLQRGVVPDLISFSSIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIY 402

Query: 248 NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA 307
            I +   C   + +  L +   M++  C  DV+T NT++NG C+   +++A ++  +MV 
Sbjct: 403 TILINGYCRNDDVSGALKMRNEMVERGCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVE 462

Query: 308 -GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 366
            G F  PD  T TT+I G    G + +AL+ L++ M  R   P +VTYN ++ G  ++  
Sbjct: 463 RGVF--PDFYTLTTLIHGYCKDGNMTKALS-LFETMTLRSLKPDVVTYNTLMDGFCKVGE 519

Query: 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI----VWPSNIHDNY 422
           +E+AKE++  M+   +     +++I+I+G C    + EA R WD++    + P+ +  N 
Sbjct: 520 MEKAKELWYDMISREIFPSYISFSILINGFCSLGLVSEAFRLWDEMKEKGIKPTLVTCN- 578

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
               +IKG  R+G + +A  FL  ++  GV P+ + YN +I+   K      A+ ++  M
Sbjct: 579 ---TIIKGYLRAGNLSKANDFLNTMISEGVPPDCITYNTLINSFVKEENFDRAFFLINNM 635

Query: 483 RKNGLNPDAVTW 494
            + GL P+ VT+
Sbjct: 636 EERGLLPNLVTY 647



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 110/404 (27%), Positives = 202/404 (50%), Gaps = 7/404 (1%)

Query: 110 LVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRG 169
           L+ ++ + G+V+  +++ ED  +  ++   +    M+++LC+ G+       +  M ++G
Sbjct: 195 LLGAIVKVGWVDLAWKVYEDFVKSGNIVNVYTLNIMVNALCKDGKLDNVGVYLSEMEEKG 254

Query: 170 LTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKAR 229
           +   LV+YN++V+  C+ G    A+ L++     G  P   TY  L+ GLC E   E+A+
Sbjct: 255 VYADLVTYNTLVNAYCRRGLVSEAFGLVDCMAGKGLKPGLFTYNALINGLCKEGSYERAK 314

Query: 230 KVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGF 289
           +VL  ML           N  L   C  ++  E   V   MLQ    PD+I+ ++++  F
Sbjct: 315 RVLDEMLGVGLCPNAATFNPMLVESCRKEDVWEAERVFNEMLQRGVVPDLISFSSIVGVF 374

Query: 290 CKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSP 349
            + G +  AL     M  G    PD V +T +I G      +  AL +  + M +RG   
Sbjct: 375 SRNGELGRALAYFEKM-KGVGLVPDTVIYTILINGYCRNDDVSGALKMRNE-MVERGCVM 432

Query: 350 GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFW 409
            +VTYN +L GL R + +++A E+F  M+  GV  D  T   +I G C+   + +A   +
Sbjct: 433 DVVTYNTLLNGLCRGKMLDDADELFKEMVERGVFPDFYTLTTLIHGYCKDGNMTKALSLF 492

Query: 410 DDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKL 469
           + +   S   D   Y  ++ G C+ G++ +A    Y+++   + P+ + ++++I+G C L
Sbjct: 493 ETMTLRSLKPDVVTYNTLMDGFCKVGEMEKAKELWYDMISREIFPSYISFSILINGFCSL 552

Query: 470 SMKREAYQILREMRKNGLNPDAVTWRILDKLH---GN--RGNDF 508
            +  EA+++  EM++ G+ P  VT   + K +   GN  + NDF
Sbjct: 553 GLVSEAFRLWDEMKEKGIKPTLVTCNTIIKGYLRAGNLSKANDF 596



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 104/417 (24%), Positives = 196/417 (47%), Gaps = 42/417 (10%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C    V EA ++F +M  RG VP+++S+++++  + R GE+  A   F++M+  G++P++
Sbjct: 340 CRKEDVWEAERVFNEMLQRGVVPDLISFSSIVGVFSRNGELGRALAYFEKMKGVGLVPDT 399

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           + Y++L+ G                                         CR   V+   
Sbjct: 400 VIYTILINGY----------------------------------------CRNDDVSGAL 419

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
           ++  +M +   V +      +++ LCR      A  +   M +RG+ P   +  +++HG 
Sbjct: 420 KMRNEMVERGCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVERGVFPDFYTLTTLIHGY 479

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
           CK G   +A  L E        P   TY  L++G C   ++EKA+++   M+S++     
Sbjct: 480 CKDGNMTKALSLFETMTLRSLKPDVVTYNTLMDGFCKVGEMEKAKELWYDMISREIFPSY 539

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
              +I +   C +   +E   +   M +   +P ++T NT+I G+ + G + +A   LN 
Sbjct: 540 ISFSILINGFCSLGLVSEAFRLWDEMKEKGIKPTLVTCNTIIKGYLRAGNLSKANDFLNT 599

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
           M++ +   PD +T+ T+I   +       A  L+   M +RG  P +VTYNA+L G  R 
Sbjct: 600 MIS-EGVPPDCITYNTLINSFVKEENFDRAFFLINN-MEERGLLPNLVTYNAILGGFSRH 657

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
            R++EA+ V + M+  G+  D +TY  +I+G    + + EA R  D+++    + D+
Sbjct: 658 GRMQEAEMVLHKMIDKGINPDKSTYTSLINGYVSKDNMKEAFRVHDEMLQRGFVPDD 714



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 45/205 (21%), Positives = 91/205 (44%), Gaps = 19/205 (9%)

Query: 312 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYS-------------------PGIV 352
           +P+     T+I  L+   ++ EA +LL +++ + G S                     +V
Sbjct: 96  SPNPSIIATLIHFLVQSKKLPEAQSLLLRIIRKSGVSHVEVIDSLISTSSSNLNSNQNVV 155

Query: 353 TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI 412
            ++ ++R   + R++ E  E F  +   G          ++  + +   +D A + ++D 
Sbjct: 156 VFDLLIRTYVQARKLREGSEAFQLLRKRGFCVSINACNALLGAIVKVGWVDLAWKVYEDF 215

Query: 413 VWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMK 472
           V   NI + Y    M+  LC+ GK+     +L E+ + GV  ++V YN +++  C+  + 
Sbjct: 216 VKSGNIVNVYTLNIMVNALCKDGKLDNVGVYLSEMEEKGVYADLVTYNTLVNAYCRRGLV 275

Query: 473 REAYQILREMRKNGLNPDAVTWRIL 497
            EA+ ++  M   GL P   T+  L
Sbjct: 276 SEAFGLVDCMAGKGLKPGLFTYNAL 300


>gi|15231338|ref|NP_187348.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75186627|sp|Q9M907.1|PP217_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g06920
 gi|6728999|gb|AAF26996.1|AC016827_7 hypothetical protein [Arabidopsis thaliana]
 gi|332640955|gb|AEE74476.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 136/507 (26%), Positives = 240/507 (47%), Gaps = 27/507 (5%)

Query: 7   LSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLT 66
           + +V EA K+F +MK +   PN+ +Y  LI   CR G++D A+++ D M+  G+ PN  T
Sbjct: 356 MGKVDEALKVFEEMK-KDAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRT 414

Query: 67  YSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSV---NNAAFANLVDSLCREGYVNEV 123
            +++V  + +++ ++ A  +         EE D  V   +   F +L+D L + G V++ 
Sbjct: 415 VNIMVDRLCKSQKLDEACAMF--------EEMDYKVCTPDEITFCSLIDGLGKVGRVDDA 466

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           +++ E M              +I +    GR     ++   M  +  +P L   N+ +  
Sbjct: 467 YKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDC 526

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           + K G   +   + EE     ++P   +Y +L+ GL       +  ++   M  +  V  
Sbjct: 527 MFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLD 586

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
           TR  NI +   C      +   +L  M     +P V+T  +VI+G  K+ R++EA  +  
Sbjct: 587 TRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFE 646

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           +    K    + V ++++I G   VGRI EA  +L ++M Q+G +P + T+N++L  L +
Sbjct: 647 E-AKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELM-QKGLTPNLYTWNSLLDALVK 704

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI----VWPSNIH 419
              + EA   F  M  +    +  TY I+I+GLC+  + ++A  FW ++    + PS I 
Sbjct: 705 AEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTIS 764

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
               Y  MI GL ++G I EA         +G  P+  CYN +I+G    +   +A+ + 
Sbjct: 765 ----YTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLF 820

Query: 480 REMRKNGL---NPDAVTWRILDKLHGN 503
            E R+ GL   N   V   +LD LH N
Sbjct: 821 EETRRRGLPIHNKTCVV--LLDTLHKN 845



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 126/490 (25%), Positives = 231/490 (47%), Gaps = 8/490 (1%)

Query: 16  LFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVL 75
           LF  M+  G+ P V  +TTLI G+ + G +D A  + DEM+   +  + + Y+V +    
Sbjct: 190 LFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFG 249

Query: 76  RTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKS 135
           +   V+ A    +K +  + E   L  +   + +++  LC+   ++E   + E + + + 
Sbjct: 250 KVGKVDMA----WKFFHEI-EANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRR 304

Query: 136 VNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQ 195
           V   +A   MI     +G+   A  ++   R +G  PS+++YN I+  L K G    A +
Sbjct: 305 VPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALK 364

Query: 196 LLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALC 255
           + EE ++    P+  TY +L++ LC    L+ A ++   M         R  NI +  LC
Sbjct: 365 VFEE-MKKDAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLC 423

Query: 256 LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA 315
             +   E   +   M    C PD IT  ++I+G  K+GR+++A KV   M+    C  ++
Sbjct: 424 KSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSD-CRTNS 482

Query: 316 VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN 375
           + +T++I    N GR ++  + +Y+ M  +  SP +   N  +  +F+    E+ + +F 
Sbjct: 483 IVYTSLIKNFFNHGRKEDG-HKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFE 541

Query: 376 CMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG 435
            +     V D+ +Y+I+I GL ++   +E    +  +     + D   Y  +I G C+ G
Sbjct: 542 EIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCG 601

Query: 436 KIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWR 495
           K+++A   L E+   G  P +V Y  VIDG  K+    EAY +  E +   +  + V + 
Sbjct: 602 KVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYS 661

Query: 496 ILDKLHGNRG 505
            L    G  G
Sbjct: 662 SLIDGFGKVG 671



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 120/503 (23%), Positives = 241/503 (47%), Gaps = 8/503 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC  +R+ EA ++F  ++    VP   +Y T+I GY   G+ D AY + +  R  G +P+
Sbjct: 283 LCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPS 342

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            + Y+ ++  + +   V+ A     K++E MK+  D + N + +  L+D LCR G ++  
Sbjct: 343 VIAYNCILTCLRKMGKVDEA----LKVFEEMKK--DAAPNLSTYNILIDMLCRAGKLDTA 396

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           F + + M +            M+D LC+S +   A  +   M  +  TP  +++ S++ G
Sbjct: 397 FELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDG 456

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           L K G    AY++ E+ +      +   Y  L++        E   K+ + M+++     
Sbjct: 457 LGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPD 516

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
            ++ N Y+  +     P +   +   +   +  PD  + + +I+G  K G   E  ++  
Sbjct: 517 LQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFY 576

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            M   + C  D   +  +I G    G++ +A  LL + M  +G+ P +VTY +V+ GL +
Sbjct: 577 SM-KEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEE-MKTKGFEPTVVTYGSVIDGLAK 634

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
           + R++EA  +F       +  +   Y+ +IDG  +  ++DEA    ++++      + Y 
Sbjct: 635 IDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYT 694

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           + +++  L ++ +I+EA+     + +   TPN V Y ++I+G CK+    +A+   +EM+
Sbjct: 695 WNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQ 754

Query: 484 KNGLNPDAVTWRILDKLHGNRGN 506
           K G+ P  +++  +       GN
Sbjct: 755 KQGMKPSTISYTTMISGLAKAGN 777



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 136/503 (27%), Positives = 239/503 (47%), Gaps = 20/503 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D    + +V  A K F ++++ G  P+ V+YT++I   C+   +D A ++F+ +     
Sbjct: 245 IDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRR 304

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P +  Y+ ++ G       + A    + L ER + +  +  +  A+  ++  L + G V
Sbjct: 305 VPCTYAYNTMIMGYGSAGKFDEA----YSLLERQRAKGSIP-SVIAYNCILTCLRKMGKV 359

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E  ++ E+M +  + N       +ID LCR+G+   A  +   M+K GL P++ + N +
Sbjct: 360 DEALKVFEEMKKDAAPNLS-TYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIM 418

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           V  LCK      A  + EE       P E T+  L++GL     ++ A KV + ML   D
Sbjct: 419 VDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKML---D 475

Query: 241 VDRTRICNIYLRALCLIKN------PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGR 294
            D      +Y     LIKN        +   +   M+   C PD+  LNT ++   K G 
Sbjct: 476 SDCRTNSIVYTS---LIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGE 532

Query: 295 IEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTY 354
            E+   +  ++ A +F  PDA +++ +I GL+  G   E   L Y  M ++G       Y
Sbjct: 533 PEKGRAMFEEIKARRF-VPDARSYSILIHGLIKAGFANETYELFYS-MKEQGCVLDTRAY 590

Query: 355 NAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVW 414
           N V+ G  +  +V +A ++   M   G      TY  VIDGL + ++LDEA   +++   
Sbjct: 591 NIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKS 650

Query: 415 PSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKRE 474
                +  +Y+++I G  + G+I EA   L EL+  G+TPN+  +N ++D   K     E
Sbjct: 651 KRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINE 710

Query: 475 AYQILREMRKNGLNPDAVTWRIL 497
           A    + M++    P+ VT+ IL
Sbjct: 711 ALVCFQSMKELKCTPNQVTYGIL 733



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 125/494 (25%), Positives = 232/494 (46%), Gaps = 11/494 (2%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           RV  A  L  +MKS     ++V Y   I  + + G++D+A+K F E+   G+ P+ +TY+
Sbjct: 218 RVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYT 277

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
            ++  + +   ++ A V MF+  E+ +          A+  ++      G  +E + + E
Sbjct: 278 SMIGVLCKANRLDEA-VEMFEHLEKNRR----VPCTYAYNTMIMGYGSAGKFDEAYSLLE 332

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
                 S+    A   ++  L + G+   A +V   M+K    P+L +YN ++  LC+ G
Sbjct: 333 RQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKKDA-APNLSTYNILIDMLCRAG 391

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK-DVDRTRIC 247
               A++L +   + G  P+  T  ++V+ LC    L++A  + + M  K    D    C
Sbjct: 392 KLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFC 451

Query: 248 NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA 307
           ++ +  L  +    +   V   ML + C+ + I   ++I  F   GR E+  K+  DM+ 
Sbjct: 452 SL-IDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMI- 509

Query: 308 GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRV 367
            + C+PD     T +  +   G  ++   +  ++  +R + P   +Y+ ++ GL +    
Sbjct: 510 NQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARR-FVPDARSYSILIHGLIKAGFA 568

Query: 368 EEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAM 427
            E  E+F  M   G V D+  Y IVIDG C+  ++++A +  +++           Y ++
Sbjct: 569 NETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSV 628

Query: 428 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
           I GL +  ++ EA     E     +  N+V Y+ +IDG  K+    EAY IL E+ + GL
Sbjct: 629 IDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGL 688

Query: 488 NPDAVTWR-ILDKL 500
            P+  TW  +LD L
Sbjct: 689 TPNLYTWNSLLDAL 702



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 122/495 (24%), Positives = 222/495 (44%), Gaps = 11/495 (2%)

Query: 8   SRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTY 67
           +++ E + +   M+     P   +YTTLI  +      D+   +F +M+  G  P    +
Sbjct: 147 NKLREGYDVVQMMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLF 206

Query: 68  SVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIA 127
           + L+RG  +   V+ A      L + MK    L  +   +   +DS  + G V+  ++  
Sbjct: 207 TTLIRGFAKEGRVDSA----LSLLDEMKSS-SLDADIVLYNVCIDSFGKVGKVDMAWKFF 261

Query: 128 EDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKH 187
            ++       +E     MI  LC++ R   A  +   + K    P   +YN+++ G    
Sbjct: 262 HEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSA 321

Query: 188 GGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD-VDRTRI 246
           G    AY LLE     G +PS   Y  ++  L     +++A KV + M  KKD       
Sbjct: 322 GKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEM--KKDAAPNLST 379

Query: 247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV 306
            NI +  LC          +   M +    P+V T+N +++  CK  +++EA  +  +M 
Sbjct: 380 YNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEM- 438

Query: 307 AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 366
             K C PD +TF ++I GL  VGR+ +A   +Y+ M         + Y ++++  F   R
Sbjct: 439 DYKVCTPDEITFCSLIDGLGKVGRVDDAYK-VYEKMLDSDCRTNSIVYTSLIKNFFNHGR 497

Query: 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAA 426
            E+  +++  M+      D       +D + ++ + ++ +  +++I     + D   Y+ 
Sbjct: 498 KEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSI 557

Query: 427 MIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG 486
           +I GL ++G  +E     Y + + G   +   YN+VIDG CK     +AYQ+L EM+  G
Sbjct: 558 LIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKG 617

Query: 487 LNPDAVTW-RILDKL 500
             P  VT+  ++D L
Sbjct: 618 FEPTVVTYGSVIDGL 632



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 113/219 (51%), Gaps = 5/219 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C   +V +A++L  +MK++G  P VV+Y ++I G  +   +D AY +F+E +   +
Sbjct: 594 IDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRI 653

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             N + YS L+ G  +   ++ A +++ +L ++      L+ N   + +L+D+L +   +
Sbjct: 654 ELNVVIYSSLIDGFGKVGRIDEAYLILEELMQK-----GLTPNLYTWNSLLDALVKAEEI 708

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           NE     + M + K    +   G +I+ LC+  + + A      M+K+G+ PS +SY ++
Sbjct: 709 NEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTM 768

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGL 219
           + GL K G    A  L +     G +P    Y  ++EGL
Sbjct: 769 ISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGL 807



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 120/226 (53%), Gaps = 8/226 (3%)

Query: 6   GLSRVG---EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           GL + G   E ++LF+ MK +G V +  +Y  +I G+C+ G+++ AY++ +EM+  G  P
Sbjct: 561 GLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEP 620

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
             +TY  ++ G+ +   ++ A    + L+E  K +  + +N   +++L+D   + G ++E
Sbjct: 621 TVVTYGSVIDGLAKIDRLDEA----YMLFEEAKSKR-IELNVVIYSSLIDGFGKVGRIDE 675

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
            + I E++ Q       +    ++D+L ++   + A      M++   TP+ V+Y  +++
Sbjct: 676 AYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILIN 735

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKA 228
           GLCK     +A+   +E  + G  PS  +Y  ++ GL    ++ +A
Sbjct: 736 GLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEA 781



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/206 (20%), Positives = 87/206 (42%), Gaps = 2/206 (0%)

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           ++L +M    F  P   T   ++ G +   +++E  +++ Q+M +  + P    Y  ++ 
Sbjct: 119 QILGEMSVAGF-GPSVNTCIEMVLGCVKANKLREGYDVV-QMMRKFKFRPAFSAYTTLIG 176

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
               +   +    +F  M  +G       +  +I G  +  ++D A    D++   S   
Sbjct: 177 AFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDA 236

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           D  +Y   I    + GK+  A  F +E+  +G+ P+ V Y  +I   CK +   EA ++ 
Sbjct: 237 DIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMF 296

Query: 480 REMRKNGLNPDAVTWRILDKLHGNRG 505
             + KN   P    +  +   +G+ G
Sbjct: 297 EHLEKNRRVPCTYAYNTMIMGYGSAG 322


>gi|226501158|ref|NP_001146427.1| uncharacterized protein LOC100280009 [Zea mays]
 gi|219887141|gb|ACL53945.1| unknown [Zea mays]
          Length = 522

 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 133/492 (27%), Positives = 241/492 (48%), Gaps = 14/492 (2%)

Query: 4   LCGLSRVG---EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           + GL R G   +A K+F +M   G VPN ++Y T+I G+ + G+++  +++ D+M H G 
Sbjct: 23  IAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAGFRLRDQMLHDGP 82

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +TY+VL+ G+ R   ++   VLM ++         +  +   ++ L D L R G  
Sbjct: 83  KPNIVTYNVLLSGLCRAGRMDETRVLMDEM-----ASHSMFPDGFTYSILFDGLTRTGES 137

Query: 121 NEVFRI-AEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
             +  + AE + +G  +   + C  +++ LC+ G+   A +V+ ++   GL P+ V YN+
Sbjct: 138 RTMLSLFAESLKKGVMLG-AYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNT 196

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           +++G C+      A+ + E+       P   TY  L+ GLC    + KA  ++  M  K 
Sbjct: 197 LINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEM-EKS 255

Query: 240 DVDRT-RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
            VD +    N  + A        +   VL  M Q   + DVI+  +V+  FCK G+I EA
Sbjct: 256 GVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEA 315

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
           + +L+DM+  K  AP+A  + +II   +  G  ++A  LL + M   G S  IVTYN +L
Sbjct: 316 VAILDDMIY-KDVAPNAQVYNSIIDAYIESGDTEQAF-LLVEKMKNSGVSASIVTYNLLL 373

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
           +GL R  +++EA+E+   +   G+  D  +Y  +I   C     D+A     ++      
Sbjct: 374 KGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIR 433

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI 478
                Y  ++  L  +G++H+      +++   V P+   Y +++D   +     +   +
Sbjct: 434 PTLRTYHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYVRCENDSKVASL 493

Query: 479 LREMRKNGLNPD 490
            +EM + G+  D
Sbjct: 494 KKEMSEKGIAFD 505



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 119/471 (25%), Positives = 212/471 (45%), Gaps = 42/471 (8%)

Query: 27  PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVL 86
           P+  SY  +I G  R+G+   A KVFDEM   GV+PN +TY+ ++ G ++  D+E     
Sbjct: 14  PDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAG--- 70

Query: 87  MFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMI 146
            F+L ++M                                  D P+   V        ++
Sbjct: 71  -FRLRDQM--------------------------------LHDGPKPNIVTYNV----LL 93

Query: 147 DSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL 206
             LCR+GR      ++  M    + P   +Y+ +  GL + G       L  E ++ G +
Sbjct: 94  SGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTRTGESRTMLSLFAESLKKGVM 153

Query: 207 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 266
              +T  +L+ GLC +  + KA +VL+ ++    V  T I N  +   C +++      +
Sbjct: 154 LGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCI 213

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
              M     +PD IT N +ING CK+  + +A  ++ +M       P   TF T+I    
Sbjct: 214 FEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGV-DPSVETFNTLIDAYG 272

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
             G++++   +L   M Q+G    ++++ +V++   +  ++ EA  + + M+   V  ++
Sbjct: 273 TAGQLEKCFTVLSD-MQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNA 331

Query: 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE 446
             Y  +ID   ES   ++A    + +           Y  ++KGLCRS +I EA   +Y 
Sbjct: 332 QVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYT 391

Query: 447 LVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           L + G+ P++V YN +I   C      +A ++L+EM K G+ P   T+  L
Sbjct: 392 LRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTL 442



 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 103/415 (24%), Positives = 191/415 (46%), Gaps = 3/415 (0%)

Query: 93  RMKEEEDLSVNNAAFANLV-DSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCR 151
           RM   E     +A   N+V   L R G  ++  ++ ++M     V        MID   +
Sbjct: 4   RMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGHVK 63

Query: 152 SGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHT 211
            G      R+   M   G  P++V+YN ++ GLC+ G       L++E       P   T
Sbjct: 64  GGDLEAGFRLRDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFT 123

Query: 212 YKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFML 271
           Y +L +GL    +      +    L K  +     C+I L  LC      +   VL  ++
Sbjct: 124 YSILFDGLTRTGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLV 183

Query: 272 QTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRI 331
            T   P  +  NT+ING+C++  +  A  +   M   +   PD +T+  +I GL  +  +
Sbjct: 184 HTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQM-KSRHIRPDHITYNALINGLCKLEMV 242

Query: 332 QEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAI 391
            +A +L+ + M + G  P + T+N ++       ++E+   V + M   G+ +D  ++  
Sbjct: 243 TKAEDLVME-MEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGS 301

Query: 392 VIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 451
           V+   C++ ++ EA    DD+++     +  VY ++I     SG   +A   + ++ +SG
Sbjct: 302 VVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSG 361

Query: 452 VTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           V+ +IV YN+++ G C+ S   EA +++  +R  GL PD V++  +     N+G+
Sbjct: 362 VSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGD 416



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 92/389 (23%), Positives = 181/389 (46%), Gaps = 46/389 (11%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   +V +A ++   +   G VP  V Y TLI+GYC+  ++  A+ +F++M+   +
Sbjct: 163 LNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHI 222

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TY+ L+ G+ +   V +A  L+ ++     E+  +  +   F  L+D+    G +
Sbjct: 223 RPDHITYNALINGLCKLEMVTKAEDLVMEM-----EKSGVDPSVETFNTLIDAYGTAGQL 277

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            + F +  DM Q    ++  + G ++ + C++G+   A  ++  M  + + P+   YNSI
Sbjct: 278 EKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSI 337

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +    + G   +A+ L+E+    G   S  TY +L++GLC  S +++A +          
Sbjct: 338 IDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEE---------- 387

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQ-CQPDVITLNTVINGFCKMGRIEEAL 299
                                     L++ L+ Q  +PDV++ NT+I+  C  G  ++AL
Sbjct: 388 --------------------------LIYTLRNQGLRPDVVSYNTIISACCNKGDTDKAL 421

Query: 300 KVLNDMVAGKF-CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
           ++L +M   K+   P   T+ T++  L + GR+ + +  LYQ M  +   P    Y  ++
Sbjct: 422 ELLQEM--NKYGIRPTLRTYHTLVSALASAGRVHD-MECLYQQMLHKNVEPSSSIYGIMV 478

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADST 387
               R     +   +   M   G+  D T
Sbjct: 479 DAYVRCENDSKVASLKKEMSEKGIAFDDT 507


>gi|357458533|ref|XP_003599547.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488595|gb|AES69798.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 636

 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 131/482 (27%), Positives = 238/482 (49%), Gaps = 50/482 (10%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           ++  G  P++ ++  LI+ YC   EM+ A+ +  ++   G  P+++T++ L++G      
Sbjct: 94  LEFHGITPDIFTFNILINCYCHMAEMNFAFSMMAKILKMGYEPDTITFNTLIKG------ 147

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
                                             LC  G V E     + +       ++
Sbjct: 148 ----------------------------------LCLNGKVKEALHFHDHVLALGFHLDQ 173

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
           F+ G +I+ LC+ G    A +++  +  + +  ++V YN+I+  LCKH   + AY+L  +
Sbjct: 174 FSYGTLINGLCKIGETRTALQMLRKIDGKLVKINVVMYNTIIDSLCKHKLVIDAYELYSQ 233

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
            I     P   T+  L+ G C    LE+A  + + M+ K         NI + ALC   N
Sbjct: 234 MIAKKISPDVVTFSALIYGFCIVGQLEEAFGLFREMVLKNINPDYYTFNILVDALCKEGN 293

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
                N+LV M++    P+V+T +++++G+C + ++ +A  VLN  ++    AP+A ++ 
Sbjct: 294 LKGAKNMLVVMMKEGVMPNVVTYSSLMDGYCLVNQVNKAKHVLN-TISQMGAAPNAHSYC 352

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
           T+I G   +  + EAL+L +  M  +G +P  VTYN+++ GL +  R+  A E+ + M  
Sbjct: 353 TMINGFCKIKMVDEALSL-FNDMQFKGIAPDKVTYNSLIDGLCKSGRISYAWELVDEMHD 411

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEA----KRFWDDIVWPSNIHDNYVYAAMIKGLCRSG 435
            G  A+  TY  +ID LC+++ +D+A    K+  D  + P    D Y +  +I GLC+ G
Sbjct: 412 NGQPANIFTYNCLIDALCKNHHVDQAIALVKKIKDQGIQP----DMYTFNILIYGLCKVG 467

Query: 436 KIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWR 495
           ++  A     +L+  G + N   YN++++G CK  +  EA  +L +M  NG+ PDAVT+ 
Sbjct: 468 RLKNAQDVFQDLLSKGYSVNAWTYNIMVNGLCKEGLFDEAEALLSKMDDNGIIPDAVTYE 527

Query: 496 IL 497
            L
Sbjct: 528 TL 529



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 104/445 (23%), Positives = 210/445 (47%), Gaps = 44/445 (9%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C ++ +  A  +   +   G+ P+ +++ TLI G C  G++  A    D +   G   + 
Sbjct: 114 CHMAEMNFAFSMMAKILKMGYEPDTITFNTLIKGLCLNGKVKEALHFHDHVLALGFHLDQ 173

Query: 65  LTYSVLVRGVLRTRDVERA--------------NVLMF-----------------KLWER 93
            +Y  L+ G+ +  +   A              NV+M+                 +L+ +
Sbjct: 174 FSYGTLINGLCKIGETRTALQMLRKIDGKLVKINVVMYNTIIDSLCKHKLVIDAYELYSQ 233

Query: 94  MKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGH-MIDSLCRS 152
           M  ++ +S +   F+ L+   C  G + E F +  +M   K++N ++   + ++D+LC+ 
Sbjct: 234 MIAKK-ISPDVVTFSALIYGFCIVGQLEEAFGLFREMVL-KNINPDYYTFNILVDALCKE 291

Query: 153 GRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTY 212
           G   GA  ++ VM K G+ P++V+Y+S++ G C      +A  +L    Q G  P+ H+Y
Sbjct: 292 GNLKGAKNMLVVMMKEGVMPNVVTYSSLMDGYCLVNQVNKAKHVLNTISQMGAAPNAHSY 351

Query: 213 KVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCL---IKNPTELLNVLVF 269
             ++ G C    +++A  +   M  K         N  +  LC    I    EL++    
Sbjct: 352 CTMINGFCKIKMVDEALSLFNDMQFKGIAPDKVTYNSLIDGLCKSGRISYAWELVD---- 407

Query: 270 MLQTQCQP-DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNV 328
            +    QP ++ T N +I+  CK   +++A+ ++   +  +   PD  TF  +I+GL  V
Sbjct: 408 EMHDNGQPANIFTYNCLIDALCKNHHVDQAIALVKK-IKDQGIQPDMYTFNILIYGLCKV 466

Query: 329 GRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTT 388
           GR++ A ++ +Q +  +GYS    TYN ++ GL +    +EA+ + + M   G++ D+ T
Sbjct: 467 GRLKNAQDV-FQDLLSKGYSVNAWTYNIMVNGLCKEGLFDEAEALLSKMDDNGIIPDAVT 525

Query: 389 YAIVIDGLCESNQLDEAKRFWDDIV 413
           Y  +I  L   ++ ++A++   +++
Sbjct: 526 YETLIQALFHKDENEKAEKLLREMI 550



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 101/384 (26%), Positives = 185/384 (48%), Gaps = 44/384 (11%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    V +A++L+  M ++   P+VV+++ LI+G+C  G+++ A+ +F EM    +
Sbjct: 215 IDSLCKHKLVIDAYELYSQMIAKKISPDVVTFSALIYGFCIVGQLEEAFGLFREMVLKNI 274

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+  T+++LV  + +  +++ A  ++  +      +E +  N   +++L+D  C    V
Sbjct: 275 NPDYYTFNILVDALCKEGNLKGAKNMLVVMM-----KEGVMPNVVTYSSLMDGYCLVNQV 329

Query: 121 NEVFRIAEDMPQ-GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           N+   +   + Q G + N    C  MI+  C+      A  +   M+ +G+ P  V+YNS
Sbjct: 330 NKAKHVLNTISQMGAAPNAHSYCT-MINGFCKIKMVDEALSLFNDMQFKGIAPDKVTYNS 388

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++ GLCK G    A++L++E    G   +  TY  L++ LC    +++A       L KK
Sbjct: 389 LIDGLCKSGRISYAWELVDEMHDNGQPANIFTYNCLIDALCKNHHVDQA-----IALVKK 443

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
             D+                                QPD+ T N +I G CK+GR++ A 
Sbjct: 444 IKDQG------------------------------IQPDMYTFNILIYGLCKVGRLKNAQ 473

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
            V  D+++  + + +A T+  ++ GL   G   EA  LL + M   G  P  VTY  +++
Sbjct: 474 DVFQDLLSKGY-SVNAWTYNIMVNGLCKEGLFDEAEALLSK-MDDNGIIPDAVTYETLIQ 531

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVV 383
            LF     E+A+++   M+   VV
Sbjct: 532 ALFHKDENEKAEKLLREMIARDVV 555



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/272 (24%), Positives = 125/272 (45%), Gaps = 26/272 (9%)

Query: 260 PTELLNVLVFMLQTQCQ--PDVITLNTVINGFCKMGR------IEEALKVLNDMVAG--- 308
           P+ L   L+  L +Q Q  P  I ++ V++ F  + R      I E  K+L  +V     
Sbjct: 23  PSFLFPFLITRLYSQFQFVPSNIDVDNVVSSFNHLLRTKPTSSIIEFNKILGSLVKSNNN 82

Query: 309 ------------KF--CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTY 354
                       +F    PD  TF  +I    ++  +  A +++ +++ + GY P  +T+
Sbjct: 83  HYPTAISLSRRLEFHGITPDIFTFNILINCYCHMAEMNFAFSMMAKIL-KMGYEPDTITF 141

Query: 355 NAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVW 414
           N +++GL    +V+EA    + +L +G   D  +Y  +I+GLC+  +   A +    I  
Sbjct: 142 NTLIKGLCLNGKVKEALHFHDHVLALGFHLDQFSYGTLINGLCKIGETRTALQMLRKIDG 201

Query: 415 PSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKRE 474
                +  +Y  +I  LC+   + +A     +++   ++P++V ++ +I G C +    E
Sbjct: 202 KLVKINVVMYNTIIDSLCKHKLVIDAYELYSQMIAKKISPDVVTFSALIYGFCIVGQLEE 261

Query: 475 AYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           A+ + REM    +NPD  T+ IL       GN
Sbjct: 262 AFGLFREMVLKNINPDYYTFNILVDALCKEGN 293



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 96/212 (45%), Gaps = 30/212 (14%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C +  V EA  LF DM+ +G  P+ V+Y +LI G C++G +  A+++ DEM   G 
Sbjct: 355 INGFCKIKMVDEALSLFNDMQFKGIAPDKVTYNSLIDGLCKSGRISYAWELVDEMHDNGQ 414

Query: 61  LPNSLTYSVLVRGVLRTRDVERA-------------------NVLMFKLWE--RMKEEED 99
             N  TY+ L+  + +   V++A                   N+L++ L +  R+K  +D
Sbjct: 415 PANIFTYNCLIDALCKNHHVDQAIALVKKIKDQGIQPDMYTFNILIYGLCKVGRLKNAQD 474

Query: 100 L---------SVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC 150
           +         SVN   +  +V+ LC+EG  +E   +   M     + +      +I +L 
Sbjct: 475 VFQDLLSKGYSVNAWTYNIMVNGLCKEGLFDEAEALLSKMDDNGIIPDAVTYETLIQALF 534

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
               N  A +++  M  R +  +L     ++H
Sbjct: 535 HKDENEKAEKLLREMIARDVVYALEGLEMVLH 566


>gi|297829236|ref|XP_002882500.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328340|gb|EFH58759.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 132/502 (26%), Positives = 244/502 (48%), Gaps = 17/502 (3%)

Query: 7   LSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLT 66
           + +V EA ++F +MK +   PN+ +Y  LI   CR G++D A+++ D M+  G+ PN  T
Sbjct: 356 MGKVDEALRVFEEMK-KDAAPNLSTYNILIDMLCRAGKLDCAFELRDSMQKAGLFPNVRT 414

Query: 67  YSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRI 126
            +++V  + +++ ++ A  +  ++  ++   ++++     F +L+D L + G V++ ++I
Sbjct: 415 VNIMVDRLCKSQKLDEACAIFEQMDYKVCTPDEIT-----FCSLIDGLGKVGRVDDAYKI 469

Query: 127 AEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK 186
            E M              +I +    GR     ++   M  +  +P L   N+ +  + K
Sbjct: 470 YEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMVNQNCSPDLQLLNTYMDCMFK 529

Query: 187 HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRI 246
            G   +   + EE     ++P   +Y +L+ GL       +  ++   M  +  V  TR 
Sbjct: 530 AGEPEKGRAMFEEIKSRRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRA 589

Query: 247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV 306
            NI +   C      +   +L  M     +P V+T  +VI+G  K+ R++EA  +L +  
Sbjct: 590 YNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAY-MLFEEA 648

Query: 307 AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 366
             K    + V ++++I G   VGRI EA  +L ++M Q+G +P + T+N++L  L +   
Sbjct: 649 KSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELM-QKGLTPNVYTWNSLLDALVKAEE 707

Query: 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI----VWPSNIHDNY 422
           + EA   F  M  +    +  TY I+I+GLC+  + ++A  FW ++    + PS I    
Sbjct: 708 INEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTIS--- 764

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
            Y  MI GL ++G I EA         +G  P+  CYN +I+G    +   +A+ +  E 
Sbjct: 765 -YTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLFEET 823

Query: 483 RKNGLNPDAVTWRI-LDKLHGN 503
           R+ GL+    T  + LD LH N
Sbjct: 824 RRRGLHIHNKTCVVLLDTLHKN 845



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 125/490 (25%), Positives = 231/490 (47%), Gaps = 8/490 (1%)

Query: 16  LFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVL 75
           LF  M+  G+ P V  +TTLI G+ + G +D A  + DEM+   +  + + Y+V +    
Sbjct: 190 LFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFG 249

Query: 76  RTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKS 135
           +   V+ A    +K +  + E   L  +   + +++  LC+   ++E   + E + + + 
Sbjct: 250 KVGKVDMA----WKFFHEI-EANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRR 304

Query: 136 VNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQ 195
           V   +A   MI     +G+   A  ++   R +G  PS+++YN I+  L K G    A +
Sbjct: 305 VPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALR 364

Query: 196 LLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALC 255
           + EE ++    P+  TY +L++ LC    L+ A ++   M         R  NI +  LC
Sbjct: 365 VFEE-MKKDAAPNLSTYNILIDMLCRAGKLDCAFELRDSMQKAGLFPNVRTVNIMVDRLC 423

Query: 256 LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA 315
             +   E   +   M    C PD IT  ++I+G  K+GR+++A K+   M+    C  ++
Sbjct: 424 KSQKLDEACAIFEQMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKIYEKMLDSD-CRTNS 482

Query: 316 VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN 375
           + +T++I    N GR ++  + +Y+ M  +  SP +   N  +  +F+    E+ + +F 
Sbjct: 483 IVYTSLIKNFFNHGRKEDG-HKIYKDMVNQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFE 541

Query: 376 CMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG 435
            +     V D+ +Y+I+I GL ++   +E    +  +     + D   Y  +I G C+ G
Sbjct: 542 EIKSRRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCG 601

Query: 436 KIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWR 495
           K+++A   L E+   G  P +V Y  VIDG  K+    EAY +  E +   +  + V + 
Sbjct: 602 KVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYS 661

Query: 496 ILDKLHGNRG 505
            L    G  G
Sbjct: 662 SLIDGFGKVG 671



 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 119/503 (23%), Positives = 241/503 (47%), Gaps = 8/503 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC  +R+ EA ++F  ++    VP   +Y T+I GY   G+ D AY + +  R  G +P+
Sbjct: 283 LCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPS 342

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            + Y+ ++  + +   V+ A     +++E MK+  D + N + +  L+D LCR G ++  
Sbjct: 343 VIAYNCILTCLRKMGKVDEA----LRVFEEMKK--DAAPNLSTYNILIDMLCRAGKLDCA 396

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           F + + M +            M+D LC+S +   A  +   M  +  TP  +++ S++ G
Sbjct: 397 FELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAIFEQMDYKVCTPDEITFCSLIDG 456

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           L K G    AY++ E+ +      +   Y  L++        E   K+ + M+++     
Sbjct: 457 LGKVGRVDDAYKIYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMVNQNCSPD 516

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
            ++ N Y+  +     P +   +   +   +  PD  + + +I+G  K G   E  ++  
Sbjct: 517 LQLLNTYMDCMFKAGEPEKGRAMFEEIKSRRFVPDARSYSILIHGLIKAGFANETYELFY 576

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            M   + C  D   +  +I G    G++ +A  LL + M  +G+ P +VTY +V+ GL +
Sbjct: 577 SM-KEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEE-MKTKGFEPTVVTYGSVIDGLAK 634

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
           + R++EA  +F       +  +   Y+ +IDG  +  ++DEA    ++++      + Y 
Sbjct: 635 IDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNVYT 694

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           + +++  L ++ +I+EA+     + +   TPN V Y ++I+G CK+    +A+   +EM+
Sbjct: 695 WNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQ 754

Query: 484 KNGLNPDAVTWRILDKLHGNRGN 506
           K G+ P  +++  +       GN
Sbjct: 755 KQGMKPSTISYTTMISGLAKAGN 777



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 126/494 (25%), Positives = 232/494 (46%), Gaps = 11/494 (2%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           RV  A  L  +MKS     ++V Y   I  + + G++D+A+K F E+   G+ P+ +TY+
Sbjct: 218 RVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYT 277

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
            ++  + +   ++ A V MF+  E+ +          A+  ++      G  +E + + E
Sbjct: 278 SMIGVLCKANRLDEA-VEMFEHLEKNRR----VPCTYAYNTMIMGYGSAGKFDEAYSLLE 332

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
                 S+    A   ++  L + G+   A RV   M+K    P+L +YN ++  LC+ G
Sbjct: 333 RQRAKGSIPSVIAYNCILTCLRKMGKVDEALRVFEEMKKDA-APNLSTYNILIDMLCRAG 391

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK-DVDRTRIC 247
               A++L +   + G  P+  T  ++V+ LC    L++A  + + M  K    D    C
Sbjct: 392 KLDCAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAIFEQMDYKVCTPDEITFC 451

Query: 248 NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA 307
           ++ +  L  +    +   +   ML + C+ + I   ++I  F   GR E+  K+  DMV 
Sbjct: 452 SL-IDGLGKVGRVDDAYKIYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMV- 509

Query: 308 GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRV 367
            + C+PD     T +  +   G  ++    +++ +  R + P   +Y+ ++ GL +    
Sbjct: 510 NQNCSPDLQLLNTYMDCMFKAGEPEKG-RAMFEEIKSRRFVPDARSYSILIHGLIKAGFA 568

Query: 368 EEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAM 427
            E  E+F  M   G V D+  Y IVIDG C+  ++++A +  +++           Y ++
Sbjct: 569 NETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSV 628

Query: 428 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
           I GL +  ++ EA     E     +  N+V Y+ +IDG  K+    EAY IL E+ + GL
Sbjct: 629 IDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGL 688

Query: 488 NPDAVTWR-ILDKL 500
            P+  TW  +LD L
Sbjct: 689 TPNVYTWNSLLDAL 702



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 113/219 (51%), Gaps = 5/219 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C   +V +A++L  +MK++G  P VV+Y ++I G  +   +D AY +F+E +   +
Sbjct: 594 IDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRI 653

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             N + YS L+ G  +   ++ A +++ +L ++      L+ N   + +L+D+L +   +
Sbjct: 654 ELNVVIYSSLIDGFGKVGRIDEAYLILEELMQK-----GLTPNVYTWNSLLDALVKAEEI 708

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           NE     + M + K    +   G +I+ LC+  + + A      M+K+G+ PS +SY ++
Sbjct: 709 NEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTM 768

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGL 219
           + GL K G    A  L +     G +P    Y  ++EGL
Sbjct: 769 ISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGL 807



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 120/226 (53%), Gaps = 8/226 (3%)

Query: 6   GLSRVG---EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           GL + G   E ++LF+ MK +G V +  +Y  +I G+C+ G+++ AY++ +EM+  G  P
Sbjct: 561 GLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEP 620

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
             +TY  ++ G+ +   ++ A    + L+E  K +  + +N   +++L+D   + G ++E
Sbjct: 621 TVVTYGSVIDGLAKIDRLDEA----YMLFEEAKSKR-IELNVVIYSSLIDGFGKVGRIDE 675

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
            + I E++ Q       +    ++D+L ++   + A      M++   TP+ V+Y  +++
Sbjct: 676 AYLILEELMQKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILIN 735

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKA 228
           GLCK     +A+   +E  + G  PS  +Y  ++ GL    ++ +A
Sbjct: 736 GLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEA 781



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 109/236 (46%), Gaps = 3/236 (1%)

Query: 262 ELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTI 321
           E  +V+  M + + +P      T+I  F  +   +  L +   M    +  P    FTT+
Sbjct: 151 EGFDVVQNMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGY-EPTVHLFTTL 209

Query: 322 IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG 381
           I G    GR+  AL+LL + M        IV YN  +    ++ +V+ A + F+ +   G
Sbjct: 210 IRGFAKEGRVDSALSLLDE-MKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANG 268

Query: 382 VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAV 441
           +  D  TY  +I  LC++N+LDEA   ++ +     +   Y Y  MI G   +GK  EA 
Sbjct: 269 LKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAY 328

Query: 442 HFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
             L      G  P+++ YN ++    K+    EA ++  EM+K+   P+  T+ IL
Sbjct: 329 SLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALRVFEEMKKDAA-PNLSTYNIL 383



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/229 (21%), Positives = 89/229 (38%), Gaps = 37/229 (16%)

Query: 277 PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALN 336
           P V T   ++    K  ++ E   V+ +M   KF  P    +TT+I G  +     + + 
Sbjct: 131 PSVNTCIEMVLSCVKANKLREGFDVVQNMRKFKF-RPAFSAYTTLI-GAFSAVNHSDMML 188

Query: 337 LLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 396
            L+Q M + GY P +  +  ++RG  +  RV+ A  + + M    + AD   Y + ID  
Sbjct: 189 TLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSF 248

Query: 397 CESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNI 456
                                               + GK+  A  F +E+  +G+ P+ 
Sbjct: 249 G-----------------------------------KVGKVDMAWKFFHEIEANGLKPDE 273

Query: 457 VCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
           V Y  +I   CK +   EA ++   + KN   P    +  +   +G+ G
Sbjct: 274 VTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAG 322


>gi|224092336|ref|XP_002309564.1| predicted protein [Populus trichocarpa]
 gi|222855540|gb|EEE93087.1| predicted protein [Populus trichocarpa]
          Length = 593

 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 132/487 (27%), Positives = 228/487 (46%), Gaps = 42/487 (8%)

Query: 7   LSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLT 66
           L RV  A  +   +   G  P +V++TTLI+  C+ G+   A ++FD+M   G  P+  T
Sbjct: 146 LQRVDLAFSVLAKIIKLGLQPTIVTFTTLINWLCKVGKFAQAMELFDDMVARGCRPDVYT 205

Query: 67  YSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRI 126
           Y+ ++ G+ +  +   A  L+ K+     EE     N   ++ ++DS  ++  VNE   I
Sbjct: 206 YTTIINGLCKIGETAAAAGLLKKM-----EEAGCQPNVVTYSTIIDSHRKDRRVNEALDI 260

Query: 127 AEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK 186
              M       + F    +I  LC   +   AS ++  MR   + P +V++N +V  +CK
Sbjct: 261 FSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASALLNEMRSLNIMPDIVTFNVLVDTICK 320

Query: 187 HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRI 246
            G    A  +L+   + G  P   TY  L+ G    S++ +ARK+   M++K        
Sbjct: 321 EGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKLFDAMITKG------- 373

Query: 247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV 306
                                       C+PDV + N +ING+CK+ RI+EA ++ N+M+
Sbjct: 374 ----------------------------CKPDVFSYNILINGYCKVKRIDEAKQLFNEMI 405

Query: 307 AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 366
                 P+ V++ T+I GL  +G ++EA NL ++ M   G  P + TY+ +L G  +   
Sbjct: 406 HQGL-TPNNVSYNTLIHGLCQLGSLREARNL-FKNMHTNGNLPNLFTYSILLDGFCKQGY 463

Query: 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAA 426
             +A  +F  M       +   Y I+ID +C+S  L +A++ + ++       +  +Y  
Sbjct: 464 FGKAFRLFRAMQSTYSKPNLVMYNILIDAMCKSGNLRDARKLFSELFVKGLQPNAQIYTT 523

Query: 427 MIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG 486
           +I GLC+ G + EA+     + + G  P+ + YNV+I G      +  A Q++ EMR  G
Sbjct: 524 IINGLCKEGLLDEALEAFRNMEEDGCPPDEISYNVIIRGFLHHKDESRAVQLIGEMRDKG 583

Query: 487 LNPDAVT 493
              D  T
Sbjct: 584 FIADVGT 590



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 127/497 (25%), Positives = 234/497 (47%), Gaps = 8/497 (1%)

Query: 2   DQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEM-DVAYKVFDEMRHCGV 60
           D  C    + +A   F  M  R  +P ++ +T L+    + G+  D    +  +M   G+
Sbjct: 70  DDACSFRNIDDALASFNHMLHRKPLPCIIQFTKLLSAIVKMGQYYDTVISLTKQMELAGL 129

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN  T S+L+      + V+ A  ++ K+ +       L      F  L++ LC+ G  
Sbjct: 130 SPNIYTLSILINCFSHLQRVDLAFSVLAKIIKL-----GLQPTIVTFTTLINWLCKVGKF 184

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +   + +DM       + +    +I+ LC+ G    A+ ++  M + G  P++V+Y++I
Sbjct: 185 AQAMELFDDMVARGCRPDVYTYTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTI 244

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +    K      A  +       G  P   TY  L++GLC  S  ++A  +L  M S   
Sbjct: 245 IDSHRKDRRVNEALDIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASALLNEMRSLNI 304

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           +      N+ +  +C     +E   VL  M +   +PDV+T ++++ G+     + EA K
Sbjct: 305 MPDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARK 364

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           + + M+  K C PD  ++  +I G   V RI EA  L  +++ Q G +P  V+YN ++ G
Sbjct: 365 LFDAMIT-KGCKPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQ-GLTPNNVSYNTLIHG 422

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L +L  + EA+ +F  M   G + +  TY+I++DG C+     +A R +  +    +  +
Sbjct: 423 LCQLGSLREARNLFKNMHTNGNLPNLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYSKPN 482

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
             +Y  +I  +C+SG + +A     EL   G+ PN   Y  +I+G CK  +  EA +  R
Sbjct: 483 LVMYNILIDAMCKSGNLRDARKLFSELFVKGLQPNAQIYTTIINGLCKEGLLDEALEAFR 542

Query: 481 EMRKNGLNPDAVTWRIL 497
            M ++G  PD +++ ++
Sbjct: 543 NMEEDGCPPDEISYNVI 559



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 104/401 (25%), Positives = 199/401 (49%), Gaps = 3/401 (0%)

Query: 107 FANLVDSLCREG-YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVM 165
           F  L+ ++ + G Y + V  + + M         +    +I+      R   A  V+  +
Sbjct: 100 FTKLLSAIVKMGQYYDTVISLTKQMELAGLSPNIYTLSILINCFSHLQRVDLAFSVLAKI 159

Query: 166 RKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDL 225
            K GL P++V++ ++++ LCK G   +A +L ++ +  G  P  +TY  ++ GLC   + 
Sbjct: 160 IKLGLQPTIVTFTTLINWLCKVGKFAQAMELFDDMVARGCRPDVYTYTTIINGLCKIGET 219

Query: 226 EKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTV 285
             A  +L+ M            +  + +    +   E L++  +M      PD+ T N++
Sbjct: 220 AAAAGLLKKMEEAGCQPNVVTYSTIIDSHRKDRRVNEALDIFSYMKVKGISPDIFTYNSL 279

Query: 286 INGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQR 345
           I G C   + +EA  +LN+M +     PD VTF  ++  +   G++ EA  +L + M + 
Sbjct: 280 IQGLCNFSQWKEASALLNEMRSLNI-MPDIVTFNVLVDTICKEGKVSEAQGVL-KTMTEM 337

Query: 346 GYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA 405
           G  P +VTY++++ G      V EA+++F+ M+  G   D  +Y I+I+G C+  ++DEA
Sbjct: 338 GVEPDVVTYSSLMYGYSLRSEVVEARKLFDAMITKGCKPDVFSYNILINGYCKVKRIDEA 397

Query: 406 KRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDG 465
           K+ +++++      +N  Y  +I GLC+ G + EA +    +  +G  PN+  Y++++DG
Sbjct: 398 KQLFNEMIHQGLTPNNVSYNTLIHGLCQLGSLREARNLFKNMHTNGNLPNLFTYSILLDG 457

Query: 466 ACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
            CK     +A+++ R M+     P+ V + IL       GN
Sbjct: 458 FCKQGYFGKAFRLFRAMQSTYSKPNLVMYNILIDAMCKSGN 498



 Score =  154 bits (389), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 112/420 (26%), Positives = 191/420 (45%), Gaps = 32/420 (7%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC + +  +A +LF DM +RG  P+V +YTT+I+G C+ GE   A  +  +M   G 
Sbjct: 175 INWLCKVGKFAQAMELFDDMVARGCRPDVYTYTTIINGLCKIGETAAAAGLLKKMEEAGC 234

Query: 61  LPNSLTYSVLVRGVLRTRDVERA-------------------NVLM-----FKLWER--- 93
            PN +TYS ++    + R V  A                   N L+     F  W+    
Sbjct: 235 QPNVVTYSTIIDSHRKDRRVNEALDIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASA 294

Query: 94  -MKEEEDLSV--NNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC 150
            + E   L++  +   F  LVD++C+EG V+E   + + M +     +      ++    
Sbjct: 295 LLNEMRSLNIMPDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYS 354

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
                  A ++   M  +G  P + SYN +++G CK      A QL  E I  G  P+  
Sbjct: 355 LRSEVVEARKLFDAMITKGCKPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNV 414

Query: 211 TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM 270
           +Y  L+ GLC    L +AR + + M +  ++      +I L   C      +   +   M
Sbjct: 415 SYNTLIHGLCQLGSLREARNLFKNMHTNGNLPNLFTYSILLDGFCKQGYFGKAFRLFRAM 474

Query: 271 LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR 330
             T  +P+++  N +I+  CK G + +A K+ +++   K   P+A  +TTII GL   G 
Sbjct: 475 QSTYSKPNLVMYNILIDAMCKSGNLRDARKLFSELFV-KGLQPNAQIYTTIINGLCKEGL 533

Query: 331 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYA 390
           + EAL   ++ M + G  P  ++YN ++RG    +    A ++   M   G +AD  T A
Sbjct: 534 LDEALE-AFRNMEEDGCPPDEISYNVIIRGFLHHKDESRAVQLIGEMRDKGFIADVGTTA 592


>gi|297848948|ref|XP_002892355.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338197|gb|EFH68614.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 988

 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 139/531 (26%), Positives = 244/531 (45%), Gaps = 59/531 (11%)

Query: 4   LCGL---SRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           LCG     ++G   ++   M   G  P+   + +L+H YC +G+   AYK+  +M  CG 
Sbjct: 344 LCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGH 403

Query: 61  LPNSLTYSVLVRGVLRTRD-----------------------VERANVLMFK--LWERMK 95
            P  + Y++L+  +   +D                       + + NV  F   L    K
Sbjct: 404 TPGYVVYNILIGSICGDKDSLSCHLLELAEKAYSEMLATGVVLNKINVSSFTRCLCSAGK 463

Query: 96  EEEDLSV-----------NNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGH 144
            E+  SV           + + ++ ++  LC    +   F + E+M +G  V + +    
Sbjct: 464 YEKAFSVIREMIGQGFIPDTSTYSKVLGYLCNASKMELAFLLFEEMKRGGLVADVYTYTI 523

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
           M+DS C++G    A +    MR+ G TP++V+Y +++H   K      A +L E  +  G
Sbjct: 524 MVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEG 583

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL 264
            LP+  TY  L++G C    +EKA ++ + M   KDV      ++Y +            
Sbjct: 584 CLPNIVTYSALIDGHCKAGQMEKACQIFERMCGSKDVPDV---DMYFKQ----------- 629

Query: 265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 324
               +      +P+V+    +++GFCK+ R+EEA K+L D ++ + C P+ + +  +I G
Sbjct: 630 ----YDDDNSERPNVVIYGALLDGFCKLHRVEEARKLL-DAMSMEGCEPNQIVYDALIDG 684

Query: 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 384
           L  VG++ EA  +  + M + G+   + TY++++   F+++R + A +V + ML      
Sbjct: 685 LCKVGKLDEAQEVKAE-MSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAP 743

Query: 385 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFL 444
           +   Y  +IDGLC+  + DEA +    +       +   Y AMI G  R GKI   +  L
Sbjct: 744 NVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGRIGKIETCLELL 803

Query: 445 YELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWR 495
             +   GV PN V Y V+ID  CK      A+ +L EM++      A  +R
Sbjct: 804 ERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHAAGYR 854



 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 139/553 (25%), Positives = 240/553 (43%), Gaps = 71/553 (12%)

Query: 6   GLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSL 65
            L +VG+  +    M++   VP+ V YT LI G C     + A    + MR    LPN +
Sbjct: 279 SLCKVGKWREALTLMETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVV 338

Query: 66  TYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFR 125
           TYS L+ G L  + + R   ++      M   E    +   F +LV + C  G  +  ++
Sbjct: 339 TYSTLLCGCLNKKQLGRCKRVL-----NMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYK 393

Query: 126 IAEDMPQ--------------------------------GKSVNEEFACGHMIDS----- 148
           + + M +                                 K+ +E  A G +++      
Sbjct: 394 LLKKMVKCGHTPGYVVYNILIGSICGDKDSLSCHLLELAEKAYSEMLATGVVLNKINVSS 453

Query: 149 ----LCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
               LC +G+   A  V+  M  +G  P   +Y+ ++  LC       A+ L EE  + G
Sbjct: 454 FTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLGYLCNASKMELAFLLFEEMKRGG 513

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFM----LSKKDVDRTRICNIYLRALCLIKNP 260
            +   +TY ++V+  C    +E+ARK    M     +   V  T + + YL+A   +   
Sbjct: 514 LVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAK-KVSYA 572

Query: 261 TELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCA-------- 312
            EL      ML   C P+++T + +I+G CK G++E+A ++   M   K           
Sbjct: 573 NELFET---MLSEGCLPNIVTYSALIDGHCKAGQMEKACQIFERMCGSKDVPDVDMYFKQ 629

Query: 313 --------PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
                   P+ V +  ++ G   + R++EA  LL   M   G  P  + Y+A++ GL ++
Sbjct: 630 YDDDNSERPNVVIYGALLDGFCKLHRVEEARKLL-DAMSMEGCEPNQIVYDALIDGLCKV 688

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY 424
            +++EA+EV   M   G  A   TY+ +ID   +  + D A +    ++  S   +  +Y
Sbjct: 689 GKLDEAQEVKAEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIY 748

Query: 425 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484
             MI GLC+ GK  EA   +  + + G  PN+V Y  +IDG  ++       ++L  M  
Sbjct: 749 TEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGRIGKIETCLELLERMGS 808

Query: 485 NGLNPDAVTWRIL 497
            G+ P+ VT+R+L
Sbjct: 809 KGVAPNYVTYRVL 821



 Score =  165 bits (417), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 129/535 (24%), Positives = 229/535 (42%), Gaps = 65/535 (12%)

Query: 35  LIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRT----------RDVERAN 84
           L+  YCR+G   +A +    ++     P+  TY+ L++  L+           R++  AN
Sbjct: 206 LVRKYCRSGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADCLDSASLVHREMSLAN 265

Query: 85  VLM--FKL------------WER---MKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIA 127
           + M  F L            W     + E E+   +   +  L+  LC      E     
Sbjct: 266 LRMDGFTLRCYAYSLCKVGKWREALTLMETENFVPDTVFYTKLISGLCEASLFEEAMDFL 325

Query: 128 EDMPQGKSVN-----EEFACGHMIDSLCRSGRNHG-ASRVVYVMRKRGLTPSLVSYNSIV 181
             M     +          CG      C + +  G   RV+ +M   G  PS   +NS+V
Sbjct: 326 NRMRATSCLPNVVTYSTLLCG------CLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLV 379

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESD------LEKARKVLQFM 235
           H  C  G    AY+LL++ ++ G+ P    Y +L+  +CG+ D      LE A K    M
Sbjct: 380 HAYCTSGDHSYAYKLLKKMVKCGHTPGYVVYNILIGSICGDKDSLSCHLLELAEKAYSEM 439

Query: 236 LSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 295
           L+   V      + + R LC      +  +V+  M+     PD  T + V+   C   ++
Sbjct: 440 LATGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLGYLCNASKM 499

Query: 296 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN 355
           E A  +  +M  G   A D  T+T ++      G I++A    +  M + G +P +VTY 
Sbjct: 500 ELAFLLFEEMKRGGLVA-DVYTYTIMVDSFCKAGLIEQARK-WFNEMREVGCTPNVVTYT 557

Query: 356 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD----- 410
           A++    + ++V  A E+F  ML  G + +  TY+ +IDG C++ Q+++A + ++     
Sbjct: 558 ALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQMEKACQIFERMCGS 617

Query: 411 ------DIVWPSNIHDN------YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVC 458
                 D+ +     DN       +Y A++ G C+  ++ EA   L  +   G  PN + 
Sbjct: 618 KDVPDVDMYFKQYDDDNSERPNVVIYGALLDGFCKLHRVEEARKLLDAMSMEGCEPNQIV 677

Query: 459 YNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW-RILDKLHGNRGNDFGLRI 512
           Y+ +IDG CK+    EA ++  EM ++G      T+  ++D+    +  D   ++
Sbjct: 678 YDALIDGLCKVGKLDEAQEVKAEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKV 732



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 130/486 (26%), Positives = 222/486 (45%), Gaps = 39/486 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C    + +A K F +M+  G  PNVV+YT LIH Y +  ++  A ++F+ M   G 
Sbjct: 525 VDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGC 584

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           LPN +TYS L+ G  +   +E+A     +++ERM   +D+   +  F    D        
Sbjct: 585 LPNIVTYSALIDGHCKAGQMEKAC----QIFERMCGSKDVPDVDMYFKQYDD-------- 632

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                   D  +  +V      G ++D  C+  R   A +++  M   G  P+ + Y+++
Sbjct: 633 --------DNSERPNV---VIYGALLDGFCKLHRVEEARKLLDAMSMEGCEPNQIVYDAL 681

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GLCK G    A ++  E  + G+  + +TY  L++        + A KVL  ML    
Sbjct: 682 IDGLCKVGKLDEAQEVKAEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSC 741

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                I    +  LC +    E   ++  M +  CQP+V+T   +I+GF ++G+IE  L+
Sbjct: 742 APNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGRIGKIETCLE 801

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +L  M   K  AP+ VT+  +I      G +  A NLL + M Q  +      Y  V+ G
Sbjct: 802 LLERM-GSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEE-MKQTHWPTHAAGYRKVIEG 859

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTT-----YAIVIDGLCESNQLDEAKRFWDDIVWP 415
             +     E  E    +  IG   D T      Y +++D L ++ +L+ A R  +++   
Sbjct: 860 FNK-----EFIESLGLLDEIG--QDDTAPFLSLYRLLVDNLIKAQRLEMALRLLEEVATF 912

Query: 416 SNIHDNY--VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKR 473
           S    +Y   Y ++I+ LC + K+ +A     E+   GV P +  +  +I G  + S   
Sbjct: 913 SATLVDYSSTYNSLIESLCLANKVDKAFRLFSEMSKKGVIPEMQTFCSLIKGLFRNSKIS 972

Query: 474 EAYQIL 479
           EA  +L
Sbjct: 973 EALLLL 978



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 97/405 (23%), Positives = 160/405 (39%), Gaps = 81/405 (20%)

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM-L 236
           N +V   C+ G    A + L     F + PS  TY  L++       L+ A  V + M L
Sbjct: 204 NVLVRKYCRSGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADCLDSASLVHREMSL 263

Query: 237 SKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIE 296
           +   +D   +   Y  +LC +    E    L  M      PD +    +I+G C+    E
Sbjct: 264 ANLRMDGFTL-RCYAYSLCKVGKWRE---ALTLMETENFVPDTVFYTKLISGLCEASLFE 319

Query: 297 EALKVLNDMVAGKFCAPDAVTFTTIIFGLLN---VGRIQEALNL---------------- 337
           EA+  LN M A   C P+ VT++T++ G LN   +GR +  LN+                
Sbjct: 320 EAMDFLNRMRATS-CLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSL 378

Query: 338 ---------------LYQVMPQRGYSPGIVTYNAVL------------------------ 358
                          L + M + G++PG V YN ++                        
Sbjct: 379 VHAYCTSGDHSYAYKLLKKMVKCGHTPGYVVYNILIGSICGDKDSLSCHLLELAEKAYSE 438

Query: 359 -----------------RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ 401
                            R L    + E+A  V   M+G G + D++TY+ V+  LC +++
Sbjct: 439 MLATGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLGYLCNASK 498

Query: 402 LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNV 461
           ++ A   ++++     + D Y Y  M+   C++G I +A  +  E+ + G TPN+V Y  
Sbjct: 499 MELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTA 558

Query: 462 VIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           +I    K      A ++   M   G  P+ VT+  L   H   G 
Sbjct: 559 LIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQ 603


>gi|242092012|ref|XP_002436496.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
 gi|241914719|gb|EER87863.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
          Length = 698

 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 135/510 (26%), Positives = 236/510 (46%), Gaps = 57/510 (11%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
            A + F  M S G  PNV +Y  L+   C  G    A  V  +MR  G  PN++TY+ LV
Sbjct: 140 SARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEALSVLRDMRGAGCDPNAVTYNTLV 199

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP 131
               R  +V+RA  L+      M  E  L  N   F ++V+ +C+ G + +  ++ ++M 
Sbjct: 200 AAFCRAGEVDRAERLV-----DMMREGGLKPNLVTFNSVVNGICKAGRMEDARKVFDEMV 254

Query: 132 QGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCM 191
           +     +  +   ++   C+ G +H A  V   M ++G+ P +V++ S++H +CK G   
Sbjct: 255 KEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRKGIMPDVVTFTSLIHVMCKAGNLE 314

Query: 192 RAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYL 251
           RA  L+ E  + G   +E T+  L++G C +  L+ A      +L+ +++ + RI     
Sbjct: 315 RAVGLVREMRERGLQMNEITFTALIDGFCKKGFLDDA------LLAVREMRQCRI----- 363

Query: 252 RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC 311
                                   QP V+  N +ING+C +GR++EA +++ +M A K  
Sbjct: 364 ------------------------QPSVVCYNALINGYCMVGRMDEARELVREMEA-KGV 398

Query: 312 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK 371
            PD VT++TI+      G    A   L Q M + G  P  +TY++++R L   +R+ +A 
Sbjct: 399 KPDVVTYSTILSAYCKNGDTHSAFQ-LNQQMLENGVLPDAITYSSLIRVLCEEKRLGDAH 457

Query: 372 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 431
            +F  M+ +G+  D  TY  +IDG C+   ++ A    D++V    + D   Y+ +I GL
Sbjct: 458 VLFKNMISLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEMVKAGVLPDVVTYSVLINGL 517

Query: 432 CRSGKIHEAVHFLYELVDSGVTPNIVCYN---------------VVIDGACKLSMKREAY 476
            +S +  EA   L++L      P  + Y+                ++ G C   +  EA 
Sbjct: 518 SKSARTKEAQRLLFKLYHEEPVPANIKYDALMRCCRNAELKSVLALLKGFCMKGLMNEAD 577

Query: 477 QILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           ++ + +     N D   + +L   H   GN
Sbjct: 578 KVYQSILDRNWNLDGSVYSVLIHGHCREGN 607



 Score =  194 bits (493), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 139/503 (27%), Positives = 232/503 (46%), Gaps = 62/503 (12%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           +C   R+ +A K+F +M   G  P+ VSY TL+ GYC+ G    A  VF EM   G++P+
Sbjct: 237 ICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRKGIMPD 296

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +T++ L+  + +  ++ERA  L+ ++ ER      L +N   F  L+D  C++G++++ 
Sbjct: 297 VVTFTSLIHVMCKAGNLERAVGLVREMRER-----GLQMNEITFTALIDGFCKKGFLDDA 351

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
                +M Q +          +I+  C  GR   A  +V  M  +G+ P +V+Y++I+  
Sbjct: 352 LLAVREMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAKGVKPDVVTYSTILSA 411

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK+G    A+QL ++ ++ G LP   TY  L+  LC E  L  A               
Sbjct: 412 YCKNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLGDAH-------------- 457

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                       L KN          M+    QPD +T  ++I+G CK G +E AL + +
Sbjct: 458 -----------VLFKN----------MISLGLQPDEVTYTSLIDGHCKEGNVERALSLHD 496

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           +MV      PD VT++ +I GL    R +EA  LL+++  +    P  + Y+A    L R
Sbjct: 497 EMVKAGV-LPDVVTYSVLINGLSKSARTKEAQRLLFKLYHEEPV-PANIKYDA----LMR 550

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
             R  E K V                  ++ G C    ++EA + +  I+  +   D  V
Sbjct: 551 CCRNAELKSVL----------------ALLKGFCMKGLMNEADKVYQSILDRNWNLDGSV 594

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y+ +I G CR G + +A+ F  +++  G  PN      +I G  +  M  EA Q+++++ 
Sbjct: 595 YSVLIHGHCREGNVMKALSFHKQMLQCGFAPNSTSTISLIRGLFEKGMVVEADQVIQQLL 654

Query: 484 KNGLNPDAVTWRILDKLHGNRGN 506
                 DA   + L  L+   GN
Sbjct: 655 NCCSLADAEASKALIDLNLKEGN 677



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 125/474 (26%), Positives = 216/474 (45%), Gaps = 43/474 (9%)

Query: 24  GHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERA 83
           G+ P+V++Y  ++        +  A + FD M   GV PN  TY++LVR           
Sbjct: 118 GYAPSVLAYNAVLLAL-SDASLPSARRFFDSMLSDGVAPNVYTYNILVR----------- 165

Query: 84  NVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACG 143
                                        +LC  G+  E   +  DM             
Sbjct: 166 -----------------------------ALCGRGHRKEALSVLRDMRGAGCDPNAVTYN 196

Query: 144 HMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQF 203
            ++ + CR+G    A R+V +MR+ GL P+LV++NS+V+G+CK G    A ++ +E ++ 
Sbjct: 197 TLVAAFCRAGEVDRAERLVDMMREGGLKPNLVTFNSVVNGICKAGRMEDARKVFDEMVKE 256

Query: 204 GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTEL 263
           G  P   +Y  LV G C      +A  V   M  K  +         +  +C   N    
Sbjct: 257 GLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRKGIMPDVVTFTSLIHVMCKAGNLERA 316

Query: 264 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF 323
           + ++  M +   Q + IT   +I+GFCK G +++AL  + +M   +   P  V +  +I 
Sbjct: 317 VGLVREMRERGLQMNEITFTALIDGFCKKGFLDDALLAVREMRQCRI-QPSVVCYNALIN 375

Query: 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 383
           G   VGR+ EA  L+ + M  +G  P +VTY+ +L    +      A ++   ML  GV+
Sbjct: 376 GYCMVGRMDEARELVRE-MEAKGVKPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVL 434

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
            D+ TY+ +I  LCE  +L +A   + +++      D   Y ++I G C+ G +  A+  
Sbjct: 435 PDAITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLIDGHCKEGNVERALSL 494

Query: 444 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
             E+V +GV P++V Y+V+I+G  K +  +EA ++L ++      P  + +  L
Sbjct: 495 HDEMVKAGVLPDVVTYSVLINGLSKSARTKEAQRLLFKLYHEEPVPANIKYDAL 548


>gi|359473521|ref|XP_002273398.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Vitis vinifera]
          Length = 755

 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 133/487 (27%), Positives = 238/487 (48%), Gaps = 7/487 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    +  A  LF  MK  G  P++V+Y +LI G+ + G +D    +F++M+    
Sbjct: 262 IDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADC 321

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TY+ L+    +   + +A    F+    MK    L  N   ++  +D+ C+EG +
Sbjct: 322 DPDVITYNALINCFCKFERMPKA----FEFLHEMKAN-GLKPNVVTYSTFIDAFCKEGML 376

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E  +   DM +      EF    +ID+ C++G    A ++V  + + G+  ++V+Y ++
Sbjct: 377 QEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTAL 436

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GLC+ G    A ++    +  G  P++ TY  LV G     ++E A+ +L+ M  K  
Sbjct: 437 LDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCI 496

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                +    L  LC      E   ++  + ++    + +   T+++ + K G+  EAL 
Sbjct: 497 KPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALT 556

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +L +M+     A + VT+  +I GL   G +QEA++  +  M + G  P +  Y A++ G
Sbjct: 557 LLEEMLDLGLIATE-VTYCALIDGLCKSGLVQEAMHH-FGRMSEIGLQPNVAVYTALVDG 614

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L +    E AK++F+ ML  G++ D   Y  +IDG  +   L EA    D ++      D
Sbjct: 615 LCKNNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMELD 674

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
            + Y A+I GL  SG++ +A + L E++  GV P+ V Y  +I     L    EA ++  
Sbjct: 675 LHAYTALIWGLSHSGQVQKARNLLDEMIGKGVLPDEVVYMCLIKKYYALGKVDEALELQN 734

Query: 481 EMRKNGL 487
           EM K G+
Sbjct: 735 EMAKRGM 741



 Score =  181 bits (459), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 126/512 (24%), Positives = 234/512 (45%), Gaps = 47/512 (9%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           L  L  + EA + F  M+     P   S   L+H   + G  D++ K F +M   G+  +
Sbjct: 195 LIELGMLEEASECFLKMRKFRVFPKPRSCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRS 254

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             TY++++  + +  D+E A      L+ +MKE    + +   + +L+D   + G ++E 
Sbjct: 255 VFTYNIMIDYLCKEGDLEMAR----SLFTQMKEA-GFTPDIVTYNSLIDGHGKLGLLDEC 309

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             I E M       +      +I+  C+  R   A   ++ M+  GL P++V+Y++ +  
Sbjct: 310 ICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDA 369

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK G    A +   +  +    P+E TY  L++  C   +L +A K+++ +L       
Sbjct: 370 FCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEIL------- 422

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                                       Q   + +V+T   +++G C+ GR++EA +V  
Sbjct: 423 ----------------------------QAGIKLNVVTYTALLDGLCEEGRMKEAEEVFR 454

Query: 304 DMV-AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
            M+ AG   AP+  T+T ++ G +    ++ A ++L + M ++   P ++ Y  +L GL 
Sbjct: 455 AMLNAG--VAPNQETYTALVHGFIKAKEMEYAKDILKE-MKEKCIKPDLLLYGTILWGLC 511

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
              R+EEAK +   +   G+  ++  Y  ++D   +S Q  EA    ++++    I    
Sbjct: 512 NESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLGLIATEV 571

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
            Y A+I GLC+SG + EA+H    + + G+ PN+  Y  ++DG CK +    A ++  EM
Sbjct: 572 TYCALIDGLCKSGLVQEAMHHFGRMSEIGLQPNVAVYTALVDGLCKNNCFEVAKKLFDEM 631

Query: 483 RKNGLNPDAVTWRIL---DKLHGNRGNDFGLR 511
              G+ PD + +  L   +  HGN      LR
Sbjct: 632 LDKGMMPDKIAYTALIDGNMKHGNLQEALNLR 663



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 113/425 (26%), Positives = 193/425 (45%), Gaps = 46/425 (10%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C   R+ +A +   +MK+ G  PNVV+Y+T I  +C+ G +  A K F +MR   + PN
Sbjct: 335 FCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPN 394

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE- 122
             TY+ L+    +  ++  A     KL E + +   + +N   +  L+D LC EG + E 
Sbjct: 395 EFTYTSLIDANCKAGNLAEA----LKLVEEILQA-GIKLNVVTYTALLDGLCEEGRMKEA 449

Query: 123 --VFRI----------------------AEDMPQGKSVNEEFA--C--------GHMIDS 148
             VFR                       A++M   K + +E    C        G ++  
Sbjct: 450 EEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWG 509

Query: 149 LCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPS 208
           LC   R   A  ++  +++ G+  + V Y +++    K G    A  LLEE +  G + +
Sbjct: 510 LCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLGLIAT 569

Query: 209 EHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLV 268
           E TY  L++GLC    +++A      M          +    +  LC  KN    +   +
Sbjct: 570 EVTYCALIDGLCKSGLVQEAMHHFGRMSEIGLQPNVAVYTALVDGLC--KNNCFEVAKKL 627

Query: 269 F--MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
           F  ML     PD I    +I+G  K G ++EAL + + M+       D   +T +I+GL 
Sbjct: 628 FDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGM-ELDLHAYTALIWGLS 686

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
           + G++Q+A NLL + M  +G  P  V Y  +++  + L +V+EA E+ N M   G++   
Sbjct: 687 HSGQVQKARNLLDE-MIGKGVLPDEVVYMCLIKKYYALGKVDEALELQNEMAKRGMITGL 745

Query: 387 TTYAI 391
           + +A+
Sbjct: 746 SDHAV 750



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 138/297 (46%), Gaps = 4/297 (1%)

Query: 206 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 265
           +P    +  L   L     LE+A +    M   +   + R CN  L  L  +        
Sbjct: 182 VPGFGVFDALFSALIELGMLEEASECFLKMRKFRVFPKPRSCNALLHRLSKVGRGDLSRK 241

Query: 266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 325
               M     +  V T N +I+  CK G +E A  +   M    F  PD VT+ ++I G 
Sbjct: 242 FFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAGF-TPDIVTYNSLIDGH 300

Query: 326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 385
             +G + E +  +++ M      P ++TYNA++    +  R+ +A E  + M   G+  +
Sbjct: 301 GKLGLLDECI-CIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPN 359

Query: 386 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY 445
             TY+  ID  C+   L EA +F+ D+   +   + + Y ++I   C++G + EA+  + 
Sbjct: 360 VVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVE 419

Query: 446 ELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
           E++ +G+  N+V Y  ++DG C+    +EA ++ R M   G+ P+  T+  L  +HG
Sbjct: 420 EILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTAL--VHG 474



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 103/213 (48%), Gaps = 2/213 (0%)

Query: 283 NTVINGFCKMGRIEEALKVLNDMVAGK-FCAPDAVTFTTIIFGLLNVGRIQEALNLLYQV 341
           N V+     + R+  +  V + + A +  C P    F  +   L+ +G ++EA     ++
Sbjct: 152 NAVLKELICLRRVLPSWDVFDLLWATRNVCVPGFGVFDALFSALIELGMLEEASECFLKM 211

Query: 342 MPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ 401
              R + P   + NA+L  L ++ R + +++ F  M   G+     TY I+ID LC+   
Sbjct: 212 RKFRVF-PKPRSCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNIMIDYLCKEGD 270

Query: 402 LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNV 461
           L+ A+  +  +       D   Y ++I G  + G + E +    ++ D+   P+++ YN 
Sbjct: 271 LEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNA 330

Query: 462 VIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
           +I+  CK     +A++ L EM+ NGL P+ VT+
Sbjct: 331 LINCFCKFERMPKAFEFLHEMKANGLKPNVVTY 363



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 93/222 (41%), Gaps = 44/222 (19%)

Query: 315 AVTFTTIIFGLLNVGRIQEALNLLYQVM-PQRGYSPGIVTYNAVLRGLFRLRRVEEAKEV 373
           A+ F     G +      EA  +L  ++   R YS      NAVL+ L  LRRV  + +V
Sbjct: 115 ALRFFEWAKGRIGFQHTSEAYCILVHILFCARFYSDA----NAVLKELICLRRVLPSWDV 170

Query: 374 FN--------CMLGIGVVADSTTYAIVIDGLCES--------------------NQL--- 402
           F+        C+ G GV  D+   A++  G+ E                     N L   
Sbjct: 171 FDLLWATRNVCVPGFGVF-DALFSALIELGMLEEASECFLKMRKFRVFPKPRSCNALLHR 229

Query: 403 -------DEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN 455
                  D +++F+ D+         + Y  MI  LC+ G +  A     ++ ++G TP+
Sbjct: 230 LSKVGRGDLSRKFFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPD 289

Query: 456 IVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           IV YN +IDG  KL +  E   I  +M+    +PD +T+  L
Sbjct: 290 IVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNAL 331


>gi|357499785|ref|XP_003620181.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495196|gb|AES76399.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 559

 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 128/467 (27%), Positives = 232/467 (49%), Gaps = 48/467 (10%)

Query: 24  GHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERA 83
           G+ PNV++ TTLI G C  G++  A +  D++   G   N ++Y  L+ G+ +      A
Sbjct: 137 GYEPNVITLTTLIKGLCLKGQIHQALQFHDKVVALGFHLNKVSYGTLINGLCKVGQTSAA 196

Query: 84  NVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACG 143
             L+ ++  ++ +      N   +  ++DS+C+   VNE F +  +              
Sbjct: 197 LQLLRRVDGKLVQP-----NVVMYNTIIDSMCKVKLVNEAFDLYSE-------------- 237

Query: 144 HMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQF 203
                                M  +G++P +V+YN+++ G C  G    A  L  + I  
Sbjct: 238 ---------------------MVSKGISPDVVTYNALISGFCIVGKMKDATDLFNKMIFE 276

Query: 204 GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTEL 263
              P+ +T+ +LV+G C E  L++A+ VL  M+ +         N  +   CL+K   + 
Sbjct: 277 NINPNVYTFNILVDGFCKERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVNKA 336

Query: 264 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF 323
            ++   + Q    P++ + + +I+GFCK+ +++EA+ +  +M       PD VT+ ++I 
Sbjct: 337 KHIFNTISQRGVNPNIHSYSIMIHGFCKIKKVDEAMNLFKEMHCNNI-IPDVVTYNSLID 395

Query: 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 383
           GL  +G+I  AL L+ + M  RG     +TYN++L  L +  +V++A  +   M   G+ 
Sbjct: 396 GLCKLGKISYALKLVDE-MHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQ 454

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
            D  TY  ++DGLC++ +L++A+  ++D++    I D  +Y AMI+G C  G   E++  
Sbjct: 455 PDICTYTTLVDGLCKNGRLEDARIVFEDLLVKGYILDVNIYTAMIQGFCSHGLFDESLDL 514

Query: 444 LYELVDSGVTPNIVCYNVVIDGACKLSMKRE---AYQILREMRKNGL 487
           L ++ ++G  PN V Y ++I   C L  K E   A ++LREM   GL
Sbjct: 515 LSKMEENGCIPNAVTYEIII---CSLFDKDENDKAEKLLREMITRGL 558



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 105/407 (25%), Positives = 207/407 (50%), Gaps = 2/407 (0%)

Query: 91  WERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC 150
           + R+  +++   +   F  ++ SL +  + + V  +   M      ++      +I+   
Sbjct: 59  FNRLLHQKNPKPSIFQFGKILGSLVKSNHYSTVVSLHRQMEFNGITSDLVILSILINCFS 118

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
           + G+N  +  V+  + K G  P++++  +++ GLC  G   +A Q  ++ +  G+  ++ 
Sbjct: 119 QLGQNPLSFSVLAKILKMGYEPNVITLTTLIKGLCLKGQIHQALQFHDKVVALGFHLNKV 178

Query: 211 TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM 270
           +Y  L+ GLC       A ++L+ +  K       + N  + ++C +K   E  ++   M
Sbjct: 179 SYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEM 238

Query: 271 LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR 330
           +     PDV+T N +I+GFC +G++++A  + N M+      P+  TF  ++ G     R
Sbjct: 239 VSKGISPDVVTYNALISGFCIVGKMKDATDLFNKMIFENI-NPNVYTFNILVDGFCKERR 297

Query: 331 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYA 390
           ++EA N+L  +M Q G  P + TYN+++     ++ V +AK +FN +   GV  +  +Y+
Sbjct: 298 LKEAKNVLAMMMKQ-GIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRGVNPNIHSYS 356

Query: 391 IVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 450
           I+I G C+  ++DEA   + ++   + I D   Y ++I GLC+ GKI  A+  + E+ D 
Sbjct: 357 IMIHGFCKIKKVDEAMNLFKEMHCNNIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDR 416

Query: 451 GVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           GV  + + YN ++D  CK     +A  +L +M+  G+ PD  T+  L
Sbjct: 417 GVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDICTYTTL 463



 Score =  171 bits (434), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 115/483 (23%), Positives = 234/483 (48%), Gaps = 52/483 (10%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M+  G   ++V  + LI+ + + G+  +++ V  ++   G  PN +T + L++G+     
Sbjct: 98  MEFNGITSDLVILSILINCFSQLGQNPLSFSVLAKILKMGYEPNVITLTTLIKGLCLKGQ 157

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
           + +A     K+           +N  ++  L++ LC+ G  +   ++   +  GK V   
Sbjct: 158 IHQALQFHDKVVAL-----GFHLNKVSYGTLINGLCKVGQTSAALQLLRRV-DGKLVQPN 211

Query: 140 FAC-GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLE 198
                 +IDS+C+    + A  +   M  +G++P +V+YN+++ G C  G    A  L  
Sbjct: 212 VVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYNALISGFCIVGKMKDATDLFN 271

Query: 199 EGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIK 258
           + I     P+ +T+ +LV+G C E  L++A+                             
Sbjct: 272 KMIFENINPNVYTFNILVDGFCKERRLKEAK----------------------------- 302

Query: 259 NPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTF 318
                 NVL  M++   +PDV T N++++ +C +  + +A  + N  ++ +   P+  ++
Sbjct: 303 ------NVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVNKAKHIFN-TISQRGVNPNIHSY 355

Query: 319 TTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCML 378
           + +I G   + ++ EA+NL ++ M      P +VTYN+++ GL +L ++  A ++ + M 
Sbjct: 356 SIMIHGFCKIKKVDEAMNL-FKEMHCNNIIPDVVTYNSLIDGLCKLGKISYALKLVDEMH 414

Query: 379 GIGVVADSTTYAIVIDGLCESNQLDEA----KRFWDDIVWPSNIHDNYVYAAMIKGLCRS 434
             GV  D  TY  ++D LC+++Q+D+A     +  D+ + P    D   Y  ++ GLC++
Sbjct: 415 DRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQP----DICTYTTLVDGLCKN 470

Query: 435 GKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
           G++ +A     +L+  G   ++  Y  +I G C   +  E+  +L +M +NG  P+AVT+
Sbjct: 471 GRLEDARIVFEDLLVKGYILDVNIYTAMIQGFCSHGLFDESLDLLSKMEENGCIPNAVTY 530

Query: 495 RIL 497
            I+
Sbjct: 531 EII 533



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 103/383 (26%), Positives = 182/383 (47%), Gaps = 9/383 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC + +   A +L   +  +   PNVV Y T+I   C+   ++ A+ ++ EM   G+
Sbjct: 184 INGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGI 243

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TY+ L+ G      ++ A  L  K+       E+++ N   F  LVD  C+E  +
Sbjct: 244 SPDVVTYNALISGFCIVGKMKDATDLFNKMI-----FENINPNVYTFNILVDGFCKERRL 298

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E   +   M +     + F    ++D  C     + A  +   + +RG+ P++ SY+ +
Sbjct: 299 KEAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRGVNPNIHSYSIM 358

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +HG CK      A  L +E      +P   TY  L++GLC    +  A K++  M   + 
Sbjct: 359 IHGFCKIKKVDEAMNLFKEMHCNNIIPDVVTYNSLIDGLCKLGKISYALKLVDEM-HDRG 417

Query: 241 VDRTRIC-NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
           V   +I  N  L ALC      + + +L  M     QPD+ T  T+++G CK GR+E+A 
Sbjct: 418 VPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDICTYTTLVDGLCKNGRLEDAR 477

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
            V  D++   +   D   +T +I G  + G   E+L+LL + M + G  P  VTY  ++ 
Sbjct: 478 IVFEDLLVKGYIL-DVNIYTAMIQGFCSHGLFDESLDLLSK-MEENGCIPNAVTYEIIIC 535

Query: 360 GLFRLRRVEEAKEVFNCMLGIGV 382
            LF     ++A+++   M+  G+
Sbjct: 536 SLFDKDENDKAEKLLREMITRGL 558


>gi|242065464|ref|XP_002454021.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
 gi|241933852|gb|EES06997.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
          Length = 729

 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 140/524 (26%), Positives = 244/524 (46%), Gaps = 79/524 (15%)

Query: 3   QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYK------------ 50
           +LC   RV +A ++F  +   G    VV+Y T+++GYCR G ++ A +            
Sbjct: 107 RLCSGGRVADAERVFATL---GASATVVTYNTMVNGYCRAGRIEDARRLISGMPFPPDTF 163

Query: 51  --------------------VFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKL 90
                               VFD+M H G  P+ +TYS+L+    +     +A VL+ ++
Sbjct: 164 TFNPLIRALCVRGRVPDALAVFDDMLHRGCSPSVVTYSILLDATCKASGYRQAMVLLDEM 223

Query: 91  WERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC 150
             +  E + ++ N      L++++C EG V+E   I  D+P      +      ++ SLC
Sbjct: 224 RAKGCEPDIVTYNV-----LINAMCNEGDVDEALNILSDLPSHGCKPDAVTYTPVLKSLC 278

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
            S R      +   M      P  V++N+IV  LC+ G   RA ++++   + G +P   
Sbjct: 279 GSERWKEVEELFAEMASNKCAPDEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHGCIPDIV 338

Query: 211 TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM 270
           TY  +++GLC                   DV R             + +  ELL+ L   
Sbjct: 339 TYSSILDGLC-------------------DVGR-------------VDDAVELLSRLK-- 364

Query: 271 LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR 330
               C+PD I   TV+ G C + + E A +++ +MV    C PD VTF T+I  L   G 
Sbjct: 365 -SYGCKPDTIAYTTVLKGLCSIEQWEHAEELMAEMVCSD-CPPDEVTFNTVIASLCQKGL 422

Query: 331 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYA 390
           +  A+ ++ Q M + G +P IVTYN+++ GL   R +++A E+ + +   G   D  T+ 
Sbjct: 423 VDRAIKVVEQ-MSENGCNPDIVTYNSIIDGLCNERCIDDAMELLSNLQSYGCKPDIVTFN 481

Query: 391 IVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 450
            ++ GLC  ++ ++A++   +++      D   +  +I  LC+ G + +A+  L  + ++
Sbjct: 482 TLLKGLCSVDRWEDAEQLMVNMMHSDCPPDATTFNTVITSLCQKGLLLQAIETLKIMAEN 541

Query: 451 GVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
           G  PN   YN+V+D   K    +EA ++L  M  NG  PD +T+
Sbjct: 542 GCIPNQSTYNIVVDALLKAGKTQEALKLLSGM-TNG-TPDLITY 583



 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 128/500 (25%), Positives = 241/500 (48%), Gaps = 15/500 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C  S   +A  L  +M+++G  P++V+Y  LI+  C  G++D A  +  ++   G 
Sbjct: 204 LDATCKASGYRQAMVLLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSDLPSHGC 263

Query: 61  LPNSLTYSVLVR---GVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCRE 117
            P+++TY+ +++   G  R ++VE       +L+  M   +  + +   F  +V SLC++
Sbjct: 264 KPDAVTYTPVLKSLCGSERWKEVE-------ELFAEMASNK-CAPDEVTFNTIVTSLCQQ 315

Query: 118 GYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
           G V+   ++ + M +   + +      ++D LC  GR   A  ++  ++  G  P  ++Y
Sbjct: 316 GLVDRAIKVVDHMSEHGCIPDIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAY 375

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
            +++ GLC       A +L+ E +     P E T+  ++  LC +  +++A KV++ M  
Sbjct: 376 TTVLKGLCSIEQWEHAEELMAEMVCSDCPPDEVTFNTVIASLCQKGLVDRAIKVVEQMSE 435

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
                     N  +  LC  +   + + +L  +    C+PD++T NT++ G C + R E+
Sbjct: 436 NGCNPDIVTYNSIIDGLCNERCIDDAMELLSNLQSYGCKPDIVTFNTLLKGLCSVDRWED 495

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           A +++ +M+    C PDA TF T+I  L   G + +A+  L ++M + G  P   TYN V
Sbjct: 496 AEQLMVNMMHSD-CPPDATTFNTVITSLCQKGLLLQAIETL-KIMAENGCIPNQSTYNIV 553

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 417
           +  L +  + +EA ++ + M       D  TY  VI  + ++ +++EA      +V    
Sbjct: 554 VDALLKAGKTQEALKLLSGM--TNGTPDLITYNTVISNITKAGKMEEALDLLRVMVSNGL 611

Query: 418 IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQ 477
             D   Y ++  G+CR      A+  L  L D G++P+   YN ++ G C+      A  
Sbjct: 612 SPDTITYRSLAYGICREDGTDRAIRMLCRLQDMGLSPDATFYNDILLGFCQNWRTDIAID 671

Query: 478 ILREMRKNGLNPDAVTWRIL 497
               M  +G  PD  T+ IL
Sbjct: 672 CFAHMVSSGCMPDESTYIIL 691



 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 125/452 (27%), Positives = 211/452 (46%), Gaps = 9/452 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +  LCG  R  E  +LF +M S    P+ V++ T++   C+ G +D A KV D M   G 
Sbjct: 274 LKSLCGSERWKEVEELFAEMASNKCAPDEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHGC 333

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P+ +TYS ++ G+     V+ A  L+ +L     +      +  A+  ++  LC     
Sbjct: 334 IPDIVTYSSILDGLCDVGRVDDAVELLSRL-----KSYGCKPDTIAYTTVLKGLCSIEQW 388

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                +  +M       +E     +I SLC+ G    A +VV  M + G  P +V+YNSI
Sbjct: 389 EHAEELMAEMVCSDCPPDEVTFNTVIASLCQKGLVDRAIKVVEQMSENGCNPDIVTYNSI 448

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GLC       A +LL     +G  P   T+  L++GLC     E A +++  M+    
Sbjct: 449 IDGLCNERCIDDAMELLSNLQSYGCKPDIVTFNTLLKGLCSVDRWEDAEQLMVNMMHSDC 508

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                  N  + +LC      + +  L  M +  C P+  T N V++   K G+ +EALK
Sbjct: 509 PPDATTFNTVITSLCQKGLLLQAIETLKIMAENGCIPNQSTYNIVVDALLKAGKTQEALK 568

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +L+ M  G    PD +T+ T+I  +   G+++EAL+LL +VM   G SP  +TY ++  G
Sbjct: 569 LLSGMTNG---TPDLITYNTVISNITKAGKMEEALDLL-RVMVSNGLSPDTITYRSLAYG 624

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           + R    + A  +   +  +G+  D+T Y  ++ G C++ + D A   +  +V    + D
Sbjct: 625 ICREDGTDRAIRMLCRLQDMGLSPDATFYNDILLGFCQNWRTDIAIDCFAHMVSSGCMPD 684

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGV 452
              Y  +++ L     + EA   L  L   GV
Sbjct: 685 ESTYIILLEALAYECLLDEAKQLLVNLCSLGV 716



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 111/390 (28%), Positives = 188/390 (48%), Gaps = 8/390 (2%)

Query: 110 LVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRG 169
           L+  LC  G V +  R+   +    +V        M++  CR+GR   A R++  M    
Sbjct: 104 LIKRLCSGGRVADAERVFATLGASATV---VTYNTMVNGYCRAGRIEDARRLISGM---P 157

Query: 170 LTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKAR 229
             P   ++N ++  LC  G    A  + ++ +  G  PS  TY +L++  C  S   +A 
Sbjct: 158 FPPDTFTFNPLIRALCVRGRVPDALAVFDDMLHRGCSPSVVTYSILLDATCKASGYRQAM 217

Query: 230 KVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGF 289
            +L  M +K         N+ + A+C   +  E LN+L  +    C+PD +T   V+   
Sbjct: 218 VLLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSDLPSHGCKPDAVTYTPVLKSL 277

Query: 290 CKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSP 349
           C   R +E  ++  +M + K CAPD VTF TI+  L   G +  A+ ++   M + G  P
Sbjct: 278 CGSERWKEVEELFAEMASNK-CAPDEVTFNTIVTSLCQQGLVDRAIKVVDH-MSEHGCIP 335

Query: 350 GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFW 409
            IVTY+++L GL  + RV++A E+ + +   G   D+  Y  V+ GLC   Q + A+   
Sbjct: 336 DIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSIEQWEHAEELM 395

Query: 410 DDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKL 469
            ++V      D   +  +I  LC+ G +  A+  + ++ ++G  P+IV YN +IDG C  
Sbjct: 396 AEMVCSDCPPDEVTFNTVIASLCQKGLVDRAIKVVEQMSENGCNPDIVTYNSIIDGLCNE 455

Query: 470 SMKREAYQILREMRKNGLNPDAVTWRILDK 499
               +A ++L  ++  G  PD VT+  L K
Sbjct: 456 RCIDDAMELLSNLQSYGCKPDIVTFNTLLK 485



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 89/163 (54%), Gaps = 7/163 (4%)

Query: 351 IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD 410
           +V  N +++ L    RV +A+ VF     +G  A   TY  +++G C + ++++A+R   
Sbjct: 98  VVPCNILIKRLCSGGRVADAERVF---ATLGASATVVTYNTMVNGYCRAGRIEDARRLIS 154

Query: 411 DIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLS 470
            + +P    D + +  +I+ LC  G++ +A+    +++  G +P++V Y++++D  CK S
Sbjct: 155 GMPFPP---DTFTFNPLIRALCVRGRVPDALAVFDDMLHRGCSPSVVTYSILLDATCKAS 211

Query: 471 MKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN-DFGLRI 512
             R+A  +L EMR  G  PD VT+ +L     N G+ D  L I
Sbjct: 212 GYRQAMVLLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNI 254



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 61/283 (21%), Positives = 125/283 (44%), Gaps = 46/283 (16%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    + +A +L  +++S G  P++V++ TL+ G C     + A ++   M H   
Sbjct: 449 IDGLCNERCIDDAMELLSNLQSYGCKPDIVTFNTLLKGLCSVDRWEDAEQLMVNMMHSDC 508

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMK--EEEDLSVNNAAFANLVDSLCREG 118
            P++ T++ ++  + +         L+ +  E +K   E     N + +  +VD+L + G
Sbjct: 509 PPDATTFNTVITSLCQKG-------LLLQAIETLKIMAENGCIPNQSTYNIVVDALLKAG 561

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
              E  ++   M  G    +      +I ++ ++G+   A  ++ VM   GL+P  ++Y 
Sbjct: 562 KTQEALKLLSGMTNGTP--DLITYNTVISNITKAGKMEEALDLLRVMVSNGLSPDTITYR 619

Query: 179 SIVHGLCKHGGCMRAYQLL-----------------------------------EEGIQF 203
           S+ +G+C+  G  RA ++L                                      +  
Sbjct: 620 SLAYGICREDGTDRAIRMLCRLQDMGLSPDATFYNDILLGFCQNWRTDIAIDCFAHMVSS 679

Query: 204 GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRI 246
           G +P E TY +L+E L  E  L++A+++L  + S   +D++ I
Sbjct: 680 GCMPDESTYIILLEALAYECLLDEAKQLLVNLCSLGVLDKSLI 722


>gi|357113916|ref|XP_003558747.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Brachypodium distachyon]
          Length = 651

 Score =  199 bits (505), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 141/485 (29%), Positives = 227/485 (46%), Gaps = 57/485 (11%)

Query: 28  NVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLM 87
           N  +   ++H YC+T +      V  EM    V P+ +T++V+V    R  DVE A  L+
Sbjct: 158 NTYTLNIMVHSYCKTLQFGEVDTVISEMEKRCVFPDVVTHNVMVDARFRAGDVEAAMALI 217

Query: 88  FKLWERMKEEEDLSVNNAAFANLVDSLCREG---YVNEVFRIAED---MPQGKSVNEEFA 141
             +  +      +      + +++  L R G      EVFR  +     P  +S N    
Sbjct: 218 DSMVSK-----GIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRSFN---- 268

Query: 142 CGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGI 201
              +I   CR+G    A R    MR R +TP +VS++ ++    + G    A + L E  
Sbjct: 269 --MLIGGFCRAGELEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLREMR 326

Query: 202 QFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPT 261
           +FG +P    Y +++ G C                               RA  ++    
Sbjct: 327 EFGLMPDGVIYTMVIGGFC-------------------------------RAGLML---- 351

Query: 262 ELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTI 321
           E L V   M+   C PDV+T NT++NG CK  R+ +A ++LN+M   +   PD  TFTT+
Sbjct: 352 EALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEELLNEM-KERGVPPDLCTFTTL 410

Query: 322 IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG 381
           I G    G I++AL     +  QR   P IVTYN ++ G+ R   + +A E+++ M    
Sbjct: 411 IHGYCRDGNIEKALQFFDTISDQR-LRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSRE 469

Query: 382 VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAV 441
           +  +  TY+I+ID  CE  Q+D A  F D++V    + +   Y ++IKG CRSG + +  
Sbjct: 470 IFPNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQ 529

Query: 442 HFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILD--- 498
            FL ++    V P+++ YN +I G  K     EA+ +L+ M    + PDAVT+ ++    
Sbjct: 530 QFLPKMRHDKVMPDLITYNTLIHGYVKEGKMHEAFNLLKIMENENVQPDAVTYNMIISGF 589

Query: 499 KLHGN 503
            +HGN
Sbjct: 590 SVHGN 594



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 118/407 (28%), Positives = 197/407 (48%), Gaps = 16/407 (3%)

Query: 102 VNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRV 161
           VN      +V S C+     EV  +  +M +     +      M+D+  R+G    A  +
Sbjct: 157 VNTYTLNIMVHSYCKTLQFGEVDTVISEMEKRCVFPDVVTHNVMVDARFRAGDVEAAMAL 216

Query: 162 VYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCG 221
           +  M  +G+ P LV+YNS++ GL ++G   +A ++       G  P   ++ +L+ G C 
Sbjct: 217 IDSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRSFNMLIGGFCR 276

Query: 222 ESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPT------ELLNVLVFMLQTQC 275
             +LE+A +  + M  +      R+    +   CLI   T           L  M +   
Sbjct: 277 AGELEEALRFYKEMRGR------RVTPDVVSFSCLIGLFTRRGEMDHAAEYLREMREFGL 330

Query: 276 QPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEAL 335
            PD +    VI GFC+ G + EAL+V ++MVA   C PD VT+ T++ GL    R+ +A 
Sbjct: 331 MPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFG-CLPDVVTYNTLLNGLCKERRLSDAE 389

Query: 336 NLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG 395
            LL + M +RG  P + T+  ++ G  R   +E+A + F+ +    +  D  TY  +IDG
Sbjct: 390 ELLNE-MKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTLIDG 448

Query: 396 LCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN 455
           +C    L +A   WDD+       ++  Y+ +I   C  G++  A  FL E+V+ G+ PN
Sbjct: 449 MCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKGIVPN 508

Query: 456 IVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
           I+ YN +I G C+     +  Q L +MR + + PD +T+  L  +HG
Sbjct: 509 IMTYNSIIKGYCRSGNVSKGQQFLPKMRHDKVMPDLITYNTL--IHG 553



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/314 (26%), Positives = 148/314 (47%), Gaps = 41/314 (13%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   R+ +A +L  +MK RG  P++ ++TTLIHGYCR G ++ A + FD +    +
Sbjct: 376 LNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRL 435

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TY+ L+ G+ R  D+ +AN    +LW+ M   E +  N+  ++ L+DS C +G V
Sbjct: 436 RPDIVTYNTLIDGMCRQGDLGKAN----ELWDDMHSRE-IFPNHVTYSILIDSHCEKGQV 490

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +  F   ++M     V        +I   CRSG      + +  MR   + P L++YN++
Sbjct: 491 DNAFAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHDKVMPDLITYNTL 550

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +HG  K G    A+ LL+        P   TY +++ G     ++++A  V + M ++  
Sbjct: 551 IHGYVKEGKMHEAFNLLKIMENENVQPDAVTYNMIISGFSVHGNMQEADWVYKKMGARG- 609

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                              +PD  T  ++ING    G  +++ +
Sbjct: 610 ----------------------------------IEPDRYTYMSMINGHVVAGNSKKSFQ 635

Query: 301 VLNDMVAGKFCAPD 314
           + ++M+  K  APD
Sbjct: 636 LHDEMLQ-KGLAPD 648



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/270 (29%), Positives = 135/270 (50%), Gaps = 41/270 (15%)

Query: 269 FMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCA-PDAVTFTTIIFGLLN 327
            +L +  + +  TLN +++ +CK  +  E   V+++M   K C  PD VT   ++     
Sbjct: 149 LVLSSNSEVNTYTLNIMVHSYCKTLQFGEVDTVISEM--EKRCVFPDVVTHNVMVDARFR 206

Query: 328 VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADST 387
            G ++ A+ L+   M  +G  PG+VTYN+VL+GL R  R ++A+EVF  M   GV  D  
Sbjct: 207 AGDVEAAMALI-DSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVR 265

Query: 388 TYAIVIDGLCESNQLDEAKRFWDDI----VWPSNIH------------------------ 419
           ++ ++I G C + +L+EA RF+ ++    V P  +                         
Sbjct: 266 SFNMLIGGFCRAGELEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLREM 325

Query: 420 -------DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMK 472
                  D  +Y  +I G CR+G + EA+    E+V  G  P++V YN +++G CK    
Sbjct: 326 REFGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRL 385

Query: 473 REAYQILREMRKNGLNPDAVTWRILDKLHG 502
            +A ++L EM++ G+ PD  T+  L  +HG
Sbjct: 386 SDAEELLNEMKERGVPPDLCTFTTL--IHG 413



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 104/209 (49%), Gaps = 5/209 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D +C    +G+A++L+ DM SR   PN V+Y+ LI  +C  G++D A+   DEM + G+
Sbjct: 446 IDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKGI 505

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +PN +TY+ +++G  R+ +V +    + K+       + +  +   +  L+    +EG +
Sbjct: 506 VPNIMTYNSIIKGYCRSGNVSKGQQFLPKM-----RHDKVMPDLITYNTLIHGYVKEGKM 560

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E F + + M       +      +I      G    A  V   M  RG+ P   +Y S+
Sbjct: 561 HEAFNLLKIMENENVQPDAVTYNMIISGFSVHGNMQEADWVYKKMGARGIEPDRYTYMSM 620

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSE 209
           ++G    G   +++QL +E +Q G  P +
Sbjct: 621 INGHVVAGNSKKSFQLHDEMLQKGLAPDD 649


>gi|41152687|dbj|BAD08212.1| hypothetical protein [Oryza sativa Indica Group]
 gi|46091163|dbj|BAD13710.1| PPR protein [Oryza sativa Indica Group]
 gi|67906116|dbj|BAE00068.1| PPR protein [Oryza sativa Indica Group]
 gi|114437073|gb|ABI74690.1| fertility restorer [Oryza sativa Indica Group]
          Length = 683

 Score =  199 bits (505), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 140/500 (28%), Positives = 238/500 (47%), Gaps = 42/500 (8%)

Query: 27  PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVL 86
           PNVV+Y ++I   C+   +D A +V   M   GV+P+ +TY+ +V G   +   + A V 
Sbjct: 121 PNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVF 180

Query: 87  MFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP--------------- 131
           + K+     E + ++ N+     L+D LC+ G   E  +I + M                
Sbjct: 181 LKKMRSDGVEPDVVTYNS-----LMDYLCKNGRCTEARKIFDSMTKRGLKPEITTYGTLL 235

Query: 132 QGKSVNEEFACGH-MIDSLCRSG--RNH-----------------GASRVVYVMRKRGLT 171
           QG +        H ++D + R+G   NH                  A  V   MR++GL 
Sbjct: 236 QGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLN 295

Query: 172 PSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKV 231
           P+ V+Y +++  LCK G    A    E+ I  G  P    Y  L+ GLC  +  E+A ++
Sbjct: 296 PNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEEL 355

Query: 232 LQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK 291
           +  ML +     T   N  + + C      E   +   M++   +PD+IT +T+I+G+C 
Sbjct: 356 ILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCL 415

Query: 292 MGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGI 351
            G+++EA K+L  MV+     PD VT++T+I G   + R+++AL +L++ M   G SP I
Sbjct: 416 AGKMDEATKLLASMVSVGM-KPDCVTYSTLINGYCKISRMKDAL-VLFREMESSGVSPDI 473

Query: 352 VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDD 411
           +TYN +L+GLF+ RR   AKE++  +   G   + +TY I++ GLC++   D+A R + +
Sbjct: 474 ITYNIILQGLFQTRRTAAAKELYVGITKSGRQLELSTYNIILHGLCKNKLTDDALRMFQN 533

Query: 412 IVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSM 471
           +       +   +  MI  L + G+  EA         +G+ PN   Y ++ +      +
Sbjct: 534 LCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGL 593

Query: 472 KREAYQILREMRKNGLNPDA 491
             E  Q+   M  NG   D+
Sbjct: 594 LEELDQLFLSMEDNGCTVDS 613



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 121/488 (24%), Positives = 236/488 (48%), Gaps = 45/488 (9%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCG--VLPNSLTYSV 69
           +A  +F ++  RG +P+V SY  L++G C       A ++   M   G    P+ ++YS 
Sbjct: 35  DARHVFDELLRRG-IPDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYST 93

Query: 70  LVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAED 129
           ++ G  +  D+++     +  +  M ++  +S N   + +++ +LC+   V++   +   
Sbjct: 94  VINGFFKEGDLDKT----YSTYNEMLDQR-ISPNVVTYNSIIAALCKAQTVDKAMEVLTT 148

Query: 130 MPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG 189
           M +   + +      ++   C SG+   A   +  MR  G+ P +V+YNS++  LCK+G 
Sbjct: 149 MVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGR 208

Query: 190 CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNI 249
           C  A ++ +   + G  P   TY  L++G   +  L                        
Sbjct: 209 CTEARKIFDSMTKRGLKPEITTYGTLLQGYATKGAL------------------------ 244

Query: 250 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK 309
                       E+  +L  M++    P+    + ++  + K  ++EEA+ V + M    
Sbjct: 245 -----------VEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQG 293

Query: 310 FCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEE 369
              P+AVT+  +I  L   GR+++A+ L ++ M   G SPG + YN+++ GL    + E 
Sbjct: 294 L-NPNAVTYGAVIGILCKSGRVEDAM-LYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWER 351

Query: 370 AKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIK 429
           A+E+   ML  G+  ++  +  +ID  C+  ++ E+++ +D +V      D   Y+ +I 
Sbjct: 352 AEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLID 411

Query: 430 GLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNP 489
           G C +GK+ EA   L  +V  G+ P+ V Y+ +I+G CK+S  ++A  + REM  +G++P
Sbjct: 412 GYCLAGKMDEATKLLASMVSVGMKPDCVTYSTLINGYCKISRMKDALVLFREMESSGVSP 471

Query: 490 DAVTWRIL 497
           D +T+ I+
Sbjct: 472 DIITYNII 479



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 118/470 (25%), Positives = 214/470 (45%), Gaps = 56/470 (11%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           MD LC   R  EA K+F  M  RG  P + +Y TL+ GY   G +   + + D M   G+
Sbjct: 200 MDYLCKNGRCTEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGI 259

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN   +S+LV    +   VE A ++  K+      ++ L+ N   +  ++  LC+ G V
Sbjct: 260 HPNHYVFSILVCAYAKQEKVEEAMLVFSKM-----RQQGLNPNAVTYGAVIGILCKSGRV 314

Query: 121 NEVFRIAEDMPQGKSVNEEFACGH-----MIDSLCRSGRNHGASRVVYVMRKRGLTPSLV 175
            +     E M     ++E  + G+     +I  LC   +   A  ++  M  RG+  + +
Sbjct: 315 EDAMLYFEQM-----IDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTI 369

Query: 176 SYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM 235
            +NSI+   CK G  + + +L +  ++ G  P   TY  L++G C    +++A K+L  M
Sbjct: 370 FFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASM 429

Query: 236 LSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 295
           +S                                      +PD +T +T+ING+CK+ R+
Sbjct: 430 VS-----------------------------------VGMKPDCVTYSTLINGYCKISRM 454

Query: 296 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN 355
           ++AL +  +M +    +PD +T+  I+ GL    R   A   LY  + + G    + TYN
Sbjct: 455 KDALVLFREMESSGV-SPDIITYNIILQGLFQTRRTAAAKE-LYVGITKSGRQLELSTYN 512

Query: 356 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP 415
            +L GL + +  ++A  +F  +  + +  ++ T+ I+ID L +  + DEAK  +  + + 
Sbjct: 513 IILHGLCKNKLTDDALRMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLF--VAFS 570

Query: 416 SN--IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463
           SN  + + + Y  M + +   G + E       + D+G T +    N ++
Sbjct: 571 SNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIV 620



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/195 (30%), Positives = 102/195 (52%), Gaps = 3/195 (1%)

Query: 313 PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYS--PGIVTYNAVLRGLFRLRRVEEA 370
           PD  ++  ++ GL +  R QEAL LL+ +M   G    P +V+Y+ V+ G F+   +++ 
Sbjct: 49  PDVFSYNILLNGLCDENRSQEALELLH-IMADDGGDCPPDVVSYSTVINGFFKEGDLDKT 107

Query: 371 KEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKG 430
              +N ML   +  +  TY  +I  LC++  +D+A      +V    + D   Y +++ G
Sbjct: 108 YSTYNEMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHG 167

Query: 431 LCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD 490
            C SG+  EA+ FL ++   GV P++V YN ++D  CK     EA +I   M K GL P+
Sbjct: 168 FCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPE 227

Query: 491 AVTWRILDKLHGNRG 505
             T+  L + +  +G
Sbjct: 228 ITTYGTLLQGYATKG 242


>gi|357438771|ref|XP_003589662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478710|gb|AES59913.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 988

 Score =  199 bits (505), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 135/472 (28%), Positives = 228/472 (48%), Gaps = 44/472 (9%)

Query: 27  PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVL 86
           P +V++ T++   C+ GE+  A +V D MR  G  PN ++Y+VLV G+    + +RA   
Sbjct: 205 PTIVTFNTMMDSRCKEGEVGRAVEVLDVMRMFGCDPNDVSYNVLVNGLSGKGEFDRAK-- 262

Query: 87  MFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMI 146
             +L E+M     L V+   +  L+   C++    E   +  +M    ++        ++
Sbjct: 263 --ELIEQM-SMLGLKVSAHTYNPLIRGFCKKEMFEEANDLRREMLGRGALPTVVTYNTIM 319

Query: 147 DSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL 206
            SLCR GR   A R + VM    L P LVSYN++++G  + G    A  L  E      +
Sbjct: 320 YSLCRLGRVSDARRYLDVMVNEDLMPDLVSYNTLIYGYSRLGNFAEALLLFSELRSKNLV 379

Query: 207 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 266
           PS  TY  L++G C   +L+ A+ +      K D+ +  +C                   
Sbjct: 380 PSVVTYNTLIDGGCRTGNLDIAKGM------KDDMIKHGLC------------------- 414

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
                     PDV+T   ++ GFC+MG +  A ++ ++M++ +   PD + +TT I G L
Sbjct: 415 ----------PDVVTFTILVRGFCQMGNLPMAKELFDEMLS-RGLKPDCIAYTTRIVGEL 463

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
            +G   +A   + + M   G+ P ++TYN ++ GL +L   ++A E+   M   G+V D 
Sbjct: 464 KLGNPSKAFG-MKEEMKAEGFPPDLITYNVLINGLCKLGNFDDANELVQKMRLEGIVPDH 522

Query: 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV-YAAMIKGLCRSGKIHEAVHFLY 445
            TY  +I     S  L +A+  + D++    IH + V Y  +I      G++  A  +  
Sbjct: 523 VTYTSIIHAHLISGLLRKAEEVFSDML-KKGIHPSVVTYTVLIHSYAVRGRLDFAKKYFD 581

Query: 446 ELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           E+ D GV+PN++ YN +I G CK +M   AY +  EM   G++P+  T+ IL
Sbjct: 582 EMQDKGVSPNVITYNALIYGLCKENMMDVAYNLFAEMESKGVSPNKYTYTIL 633



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 132/500 (26%), Positives = 227/500 (45%), Gaps = 44/500 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           MD  C    VG A ++   M+  G  PN VSY  L++G    GE D A ++ ++M   G+
Sbjct: 214 MDSRCKEGEVGRAVEVLDVMRMFGCDPNDVSYNVLVNGLSGKGEFDRAKELIEQMSMLGL 273

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             ++ TY+ L+RG  +    E AN L  ++  R      ++ N   +     SLCR G V
Sbjct: 274 KVSAHTYNPLIRGFCKKEMFEEANDLRREMLGRGALPTVVTYNTIMY-----SLCRLGRV 328

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           ++  R  + M     + +  +   +I    R G    A  +   +R + L PS+V+YN++
Sbjct: 329 SDARRYLDVMVNEDLMPDLVSYNTLIYGYSRLGNFAEALLLFSELRSKNLVPSVVTYNTL 388

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G C+ G    A  + ++ I+ G  P   T+ +LV G C   +L  A+++   MLS+  
Sbjct: 389 IDGGCRTGNLDIAKGMKDDMIKHGLCPDVVTFTILVRGFCQMGNLPMAKELFDEMLSRGL 448

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                     +     + NP++   +   M      PD+IT N +ING CK+G  ++A +
Sbjct: 449 KPDCIAYTTRIVGELKLGNPSKAFGMKEEMKAEGFPPDLITYNVLINGLCKLGNFDDANE 508

Query: 301 VLNDM-VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           ++  M + G    PD VT+T+II   L  G +++A   ++  M ++G  P +VTY  ++ 
Sbjct: 509 LVQKMRLEG--IVPDHVTYTSIIHAHLISGLLRKA-EEVFSDMLKKGIHPSVVTYTVLIH 565

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
                 R++ AK+ F+ M   GV  +  TY  +I GLC+ N +D                
Sbjct: 566 SYAVRGRLDFAKKYFDEMQDKGVSPNVITYNALIYGLCKENMMD---------------- 609

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
                               A +   E+   GV+PN   Y ++I+    L   ++A ++ 
Sbjct: 610 -------------------VAYNLFAEMESKGVSPNKYTYTILINENSNLQYWQDALKLY 650

Query: 480 REMRKNGLNPDAVTWRILDK 499
           ++M    + PD+ T   L K
Sbjct: 651 KDMLDREIKPDSCTHSALMK 670



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 105/364 (28%), Positives = 175/364 (48%), Gaps = 25/364 (6%)

Query: 163 YVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQF----GYLP----------S 208
           +V ++     S  ++ +I+  L K+G    AY ++E+ I+     G L           S
Sbjct: 74  WVEKQPNFHRSETAFVAILDILAKNGFMKPAYWVMEKAIEVKVDGGVLDVLVGIGCGRNS 133

Query: 209 EHTYKVL---VEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPT---E 262
           E + K+L   ++    +  LEK   V   M++   +   R CN   R L L+K+ +   E
Sbjct: 134 EVSVKLLDLLIQVFAKKLILEKCLMVFYKMVNNGLLPDVRNCN---RVLKLLKDKSMVNE 190

Query: 263 LLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTII 322
           +  V   M++ Q +P ++T NT+++  CK G +  A++VL D++    C P+ V++  ++
Sbjct: 191 VEEVYSVMIKCQIRPTIVTFNTMMDSRCKEGEVGRAVEVL-DVMRMFGCDPNDVSYNVLV 249

Query: 323 FGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGV 382
            GL   G    A  L+ Q M   G      TYN ++RG  +    EEA ++   MLG G 
Sbjct: 250 NGLSGKGEFDRAKELIEQ-MSMLGLKVSAHTYNPLIRGFCKKEMFEEANDLRREMLGRGA 308

Query: 383 VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVH 442
           +    TY  ++  LC   ++ +A+R+ D +V    + D   Y  +I G  R G   EA+ 
Sbjct: 309 LPTVVTYNTIMYSLCRLGRVSDARRYLDVMVNEDLMPDLVSYNTLIYGYSRLGNFAEALL 368

Query: 443 FLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
              EL    + P++V YN +IDG C+      A  +  +M K+GL PD VT+ IL +   
Sbjct: 369 LFSELRSKNLVPSVVTYNTLIDGGCRTGNLDIAKGMKDDMIKHGLCPDVVTFTILVRGFC 428

Query: 503 NRGN 506
             GN
Sbjct: 429 QMGN 432



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 108/409 (26%), Positives = 188/409 (45%), Gaps = 56/409 (13%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M  LC L RV +A +    M +   +P++VSY TLI+GY R G    A  +F E+R   +
Sbjct: 319 MYSLCRLGRVSDARRYLDVMVNEDLMPDLVSYNTLIYGYSRLGNFAEALLLFSELRSKNL 378

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEE---EDLSVNNAAFANLVDSLCRE 117
           +P+ +TY+ L+ G  RT +++ A        + MK++     L  +   F  LV   C+ 
Sbjct: 379 VPSVVTYNTLIDGGCRTGNLDIA--------KGMKDDMIKHGLCPDVVTFTILVRGFCQM 430

Query: 118 GYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
           G          ++P  K + +E                         M  RGL P  ++Y
Sbjct: 431 G----------NLPMAKELFDE-------------------------MLSRGLKPDCIAY 455

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM-- 235
            + + G  K G   +A+ + EE    G+ P   TY VL+ GLC   + + A +++Q M  
Sbjct: 456 TTRIVGELKLGNPSKAFGMKEEMKAEGFPPDLITYNVLINGLCKLGNFDDANELVQKMRL 515

Query: 236 --LSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMG 293
             +    V  T I + +L +  L++   E   V   ML+    P V+T   +I+ +   G
Sbjct: 516 EGIVPDHVTYTSIIHAHLIS-GLLRKAEE---VFSDMLKKGIHPSVVTYTVLIHSYAVRG 571

Query: 294 RIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVT 353
           R++ A K  ++M   K  +P+ +T+  +I+GL     +  A NL  + M  +G SP   T
Sbjct: 572 RLDFAKKYFDEM-QDKGVSPNVITYNALIYGLCKENMMDVAYNLFAE-MESKGVSPNKYT 629

Query: 354 YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQL 402
           Y  ++     L+  ++A +++  ML   +  DS T++ ++  L +  +L
Sbjct: 630 YTILINENSNLQYWQDALKLYKDMLDREIKPDSCTHSALMKHLSKDYKL 678


>gi|356499433|ref|XP_003518545.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Glycine max]
          Length = 905

 Score =  199 bits (505), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 134/494 (27%), Positives = 229/494 (46%), Gaps = 9/494 (1%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           +V EA ++   MK     PN+ SY  LI   C+ GE++ A KV D M+  G+ PN +T +
Sbjct: 392 KVEEALRILEAMKMDA-APNLTSYNILIDMLCKAGELEAALKVQDSMKEAGLFPNIITVN 450

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
           +++  + + + ++ A  +   L  ++      + ++  F +L+D L R G VN+ + + E
Sbjct: 451 IMIDRLCKAQRLDEACSIFLGLDHKV-----CTPDSVTFCSLIDGLGRHGKVNDAYMLYE 505

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
            M              +I +  + GR     ++   M  RG +P L+  N+ +  + K G
Sbjct: 506 KMLDSGQTPNAVVYTSLIRNFFKCGRKEDGHKIYKEMMHRGCSPDLMLLNNYMDCVFKAG 565

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
              +   L EE    G  P   +Y +L+ GL      +   K+   M  +     TR  N
Sbjct: 566 EIEKGRALFEEIKAQGLTPDVRSYSILIHGLVKGGFSKDTYKLFYEMKEQGLHLDTRAYN 625

Query: 249 IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 308
           I +   C      +   +L  M     QP V+T  +VI+G  K+ R++EA  +  +    
Sbjct: 626 IVIDGFCKSGKVNKAYQLLEEMKTKGLQPTVVTYGSVIDGLAKIDRLDEAYMLFEE-AKS 684

Query: 309 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE 368
           K    + V ++++I G   VGRI EA  +L ++M Q+G +P   T+N +L  L +   ++
Sbjct: 685 KAVDLNVVVYSSLIDGFGKVGRIDEAYLILEELM-QKGLTPNTYTWNCLLDALVKAEEID 743

Query: 369 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI 428
           EA   F  M  +    +  TY+I+++GLC+  + ++A  FW ++       +   Y  MI
Sbjct: 744 EALVCFQNMKNLKCPPNEVTYSIMVNGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTTMI 803

Query: 429 KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLN 488
            GL R G + EA         SG  P+  CYN +I+G    +   +AY +  E R  G  
Sbjct: 804 SGLARVGNVLEAKDLFERFKSSGGIPDSACYNAMIEGLSNANKAMDAYILFEETRLKGCR 863

Query: 489 PDAVTWRI-LDKLH 501
             + T  + LD LH
Sbjct: 864 IYSKTCVVLLDALH 877



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 124/479 (25%), Positives = 229/479 (47%), Gaps = 43/479 (8%)

Query: 16  LFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVL 75
           L   M+  G+   V  +TTLI  + R G +D A  + DEM+      + + Y+V +    
Sbjct: 224 LLRQMQEIGYEVTVHLFTTLICVFAREGRVDAALSLLDEMKSNSFNADLVLYNVCIDCFG 283

Query: 76  RTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKS 135
           +   V+ A    +K +  +K +  L  ++  F +++  LC+   V+E   + E++   KS
Sbjct: 284 KVGKVDMA----WKFFHELKSQ-GLVPDDVTFTSMIGVLCKAERVDEAVELFEELDSNKS 338

Query: 136 VNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQ 195
           V   +A   MI      G+ + A  ++   +++G  PS+++YN I+  L + G    A +
Sbjct: 339 VPCVYAYNTMIMGYGSVGKFNEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALR 398

Query: 196 LLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALC 255
           +LE  ++    P+  +Y +L++ LC   +LE A KV          D  +   ++     
Sbjct: 399 ILE-AMKMDAAPNLTSYNILIDMLCKAGELEAALKV---------QDSMKEAGLF----- 443

Query: 256 LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA 315
                                P++IT+N +I+  CK  R++EA  +   +   K C PD+
Sbjct: 444 ---------------------PNIITVNIMIDRLCKAQRLDEACSIFLGL-DHKVCTPDS 481

Query: 316 VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN 375
           VTF ++I GL   G++ +A  +LY+ M   G +P  V Y +++R  F+  R E+  +++ 
Sbjct: 482 VTFCSLIDGLGRHGKVNDAY-MLYEKMLDSGQTPNAVVYTSLIRNFFKCGRKEDGHKIYK 540

Query: 376 CMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG 435
            M+  G   D       +D + ++ ++++ +  +++I       D   Y+ +I GL + G
Sbjct: 541 EMMHRGCSPDLMLLNNYMDCVFKAGEIEKGRALFEEIKAQGLTPDVRSYSILIHGLVKGG 600

Query: 436 KIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
              +     YE+ + G+  +   YN+VIDG CK     +AYQ+L EM+  GL P  VT+
Sbjct: 601 FSKDTYKLFYEMKEQGLHLDTRAYNIVIDGFCKSGKVNKAYQLLEEMKTKGLQPTVVTY 659



 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 108/421 (25%), Positives = 204/421 (48%), Gaps = 27/421 (6%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D+LC   R+ EA  +F  +  +   P+ V++ +LI G  R G+++ AY ++++M   G 
Sbjct: 453 IDRLCKAQRLDEACSIFLGLDHKVCTPDSVTFCSLIDGLGRHGKVNDAYMLYEKMLDSGQ 512

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN++ Y+ L+R   +    E  + +  ++  R    + + +NN              Y+
Sbjct: 513 TPNAVVYTSLIRNFFKCGRKEDGHKIYKEMMHRGCSPDLMLLNN--------------YM 558

Query: 121 NEVFRIAEDMPQGKSVNEEFAC----------GHMIDSLCRSGRNHGASRVVYVMRKRGL 170
           + VF+  E + +G+++ EE               +I  L + G +    ++ Y M+++GL
Sbjct: 559 DCVFKAGE-IEKGRALFEEIKAQGLTPDVRSYSILIHGLVKGGFSKDTYKLFYEMKEQGL 617

Query: 171 TPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARK 230
                +YN ++ G CK G   +AYQLLEE    G  P+  TY  +++GL     L++A  
Sbjct: 618 HLDTRAYNIVIDGFCKSGKVNKAYQLLEEMKTKGLQPTVVTYGSVIDGLAKIDRLDEAYM 677

Query: 231 VLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFC 290
           + +   SK       + +  +     +    E   +L  ++Q    P+  T N +++   
Sbjct: 678 LFEEAKSKAVDLNVVVYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNTYTWNCLLDALV 737

Query: 291 KMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG 350
           K   I+EAL    +M   K C P+ VT++ ++ GL  V +  +A  + +Q M ++G  P 
Sbjct: 738 KAEEIDEALVCFQNMKNLK-CPPNEVTYSIMVNGLCKVRKFNKAF-VFWQEMQKQGLKPN 795

Query: 351 IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD 410
            +TY  ++ GL R+  V EAK++F      G + DS  Y  +I+GL  +N+  +A   ++
Sbjct: 796 TITYTTMISGLARVGNVLEAKDLFERFKSSGGIPDSACYNAMIEGLSNANKAMDAYILFE 855

Query: 411 D 411
           +
Sbjct: 856 E 856



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 121/507 (23%), Positives = 217/507 (42%), Gaps = 53/507 (10%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           +KS G    V     ++  Y     ++ A   FDEM      P       LV GV+R   
Sbjct: 61  LKSEGMRKTVHDVCRVLDTYPWGAALEDALNTFDEMPQ----PE------LVVGVIRRLK 110

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
             R  +  F+  ER  ++     +  A+  L+  + R   +  + +I E+M         
Sbjct: 111 DVRVALHYFRWVERKTKQLH---SPEAYNALLMLMARTRNLEYLEQILEEMSMAGFGPSN 167

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
             C  M+ S  +S +   A  V+  MRK    P+  +Y +++  L           LL +
Sbjct: 168 NTCIEMVASFVKSRKLREAFGVIETMRKFKFRPAYSAYTTLIGALSAAHEADPMLTLLRQ 227

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
             + GY  + H +  L+     E  ++ A  +L  M S        + N+ +     +  
Sbjct: 228 MQEIGYEVTVHLFTTLICVFAREGRVDAALSLLDEMKSNSFNADLVLYNVCIDCFGKV-G 286

Query: 260 PTELLNVLVFMLQTQ-CQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTF 318
             ++       L++Q   PD +T  ++I   CK  R++EA+++  ++ + K   P    +
Sbjct: 287 KVDMAWKFFHELKSQGLVPDDVTFTSMIGVLCKAERVDEAVELFEELDSNK-SVPCVYAY 345

Query: 319 TTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCML 378
            T+I G  +VG+  EA +LL +   ++G  P ++ YN +L  L R  +VEEA  +   M 
Sbjct: 346 NTMIMGYGSVGKFNEAYSLL-ERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRILEAM- 403

Query: 379 GIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI----VWPSNIH--------------- 419
            +    + T+Y I+ID LC++ +L+ A +  D +    ++P+ I                
Sbjct: 404 KMDAAPNLTSYNILIDMLCKAGELEAALKVQDSMKEAGLFPNIITVNIMIDRLCKAQRLD 463

Query: 420 ----------------DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463
                           D+  + ++I GL R GK+++A     +++DSG TPN V Y  +I
Sbjct: 464 EACSIFLGLDHKVCTPDSVTFCSLIDGLGRHGKVNDAYMLYEKMLDSGQTPNAVVYTSLI 523

Query: 464 DGACKLSMKREAYQILREMRKNGLNPD 490
               K   K + ++I +EM   G +PD
Sbjct: 524 RNFFKCGRKEDGHKIYKEMMHRGCSPD 550



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 109/228 (47%), Gaps = 5/228 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D L  + R+ EA+ LF + KS+    NVV Y++LI G+ + G +D AY + +E+   G+
Sbjct: 663 IDGLAKIDRLDEAYMLFEEAKSKAVDLNVVVYSSLIDGFGKVGRIDEAYLILEELMQKGL 722

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN+ T++ L+  +++  +++ A ++ F+  + +K       N   ++ +V+ LC+    
Sbjct: 723 TPNTYTWNCLLDALVKAEEIDEA-LVCFQNMKNLK----CPPNEVTYSIMVNGLCKVRKF 777

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           N+ F   ++M +            MI  L R G    A  +    +  G  P    YN++
Sbjct: 778 NKAFVFWQEMQKQGLKPNTITYTTMISGLARVGNVLEAKDLFERFKSSGGIPDSACYNAM 837

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKA 228
           + GL      M AY L EE    G      T  VL++ L     LE+A
Sbjct: 838 IEGLSNANKAMDAYILFEETRLKGCRIYSKTCVVLLDALHKADCLEQA 885



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/266 (25%), Positives = 113/266 (42%), Gaps = 3/266 (1%)

Query: 248 NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA 307
           N  L  +   +N   L  +L  M      P   T   ++  F K  ++ EA  V+  M  
Sbjct: 136 NALLMLMARTRNLEYLEQILEEMSMAGFGPSNNTCIEMVASFVKSRKLREAFGVIETMRK 195

Query: 308 GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRV 367
            KF  P    +TT+I  L         L LL Q M + GY   +  +  ++    R  RV
Sbjct: 196 FKF-RPAYSAYTTLIGALSAAHEADPMLTLLRQ-MQEIGYEVTVHLFTTLICVFAREGRV 253

Query: 368 EEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAM 427
           + A  + + M      AD   Y + ID   +  ++D A +F+ ++     + D+  + +M
Sbjct: 254 DAALSLLDEMKSNSFNADLVLYNVCIDCFGKVGKVDMAWKFFHELKSQGLVPDDVTFTSM 313

Query: 428 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
           I  LC++ ++ EAV    EL  +   P +  YN +I G   +    EAY +L   ++ G 
Sbjct: 314 IGVLCKAERVDEAVELFEELDSNKSVPCVYAYNTMIMGYGSVGKFNEAYSLLERQKRKGC 373

Query: 488 NPDAVTWRILDKLHGNRGN-DFGLRI 512
            P  + +  +    G +G  +  LRI
Sbjct: 374 IPSVIAYNCILTCLGRKGKVEEALRI 399



 Score = 42.7 bits (99), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 3/97 (3%)

Query: 4   LCGLSRVG---EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           + GL+RVG   EA  LF   KS G +P+   Y  +I G     +   AY +F+E R  G 
Sbjct: 803 ISGLARVGNVLEAKDLFERFKSSGGIPDSACYNAMIEGLSNANKAMDAYILFEETRLKGC 862

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEE 97
              S T  VL+  + +   +E+A ++   L E  K +
Sbjct: 863 RIYSKTCVVLLDALHKADCLEQAAIVGAVLREMAKSQ 899


>gi|9502388|gb|AAF88095.1|AC025417_23 T12C24.15 [Arabidopsis thaliana]
          Length = 735

 Score =  199 bits (505), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 132/495 (26%), Positives = 235/495 (47%), Gaps = 42/495 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   RV EA +L   M   GH P +++   L++G C  G++  A  + D M   G 
Sbjct: 149 INGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGF 208

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +TY  +++ + ++     A  L+ K+     EE  + ++   ++ ++D LC++G +
Sbjct: 209 QPNEVTYGPVLKVMCKSGQTALAMELLRKM-----EERKIKLDAVKYSIIIDGLCKDGSL 263

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +  F +  +M       +      +I   C +GR    ++++  M KR +TP +V+++++
Sbjct: 264 DNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSAL 323

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +    K G    A +L +E IQ G  P   TY  L++G C E+ L+KA  +L  M+SK  
Sbjct: 324 IDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSK-- 381

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                             C P++ T N +ING+CK   I++ L+
Sbjct: 382 ---------------------------------GCGPNIRTFNILINGYCKANLIDDGLE 408

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +   M      A D VT+ T+I G   +G+++ A   L+Q M  R   P IV+Y  +L G
Sbjct: 409 LFRKMSLRGVVA-DTVTYNTLIQGFCELGKLEVAKE-LFQEMVSRRVRPDIVSYKILLDG 466

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L      E+A E+F  +    +  D   Y I+I G+C ++++D+A   +  +       D
Sbjct: 467 LCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPD 526

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              Y  MI GLC+ G + EA     ++ + G +PN   YN++I          ++ +++ 
Sbjct: 527 VKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIE 586

Query: 481 EMRKNGLNPDAVTWR 495
           E+++ G + DA T R
Sbjct: 587 EIKRCGFSVDASTLR 601



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 137/491 (27%), Positives = 241/491 (49%), Gaps = 15/491 (3%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M+ +G   N+ + + +I+  CR  ++ +A+    ++   G  P+++T+S L+ G+     
Sbjct: 98  MELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGR 157

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
           V  A  L+ ++ E M  +  L   NA    LV+ LC  G V++   + + M +      E
Sbjct: 158 VSEALELVDRMVE-MGHKPTLITLNA----LVNGLCLNGKVSDAVLLIDRMVETGFQPNE 212

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
              G ++  +C+SG+   A  ++  M +R +    V Y+ I+ GLCK G    A+ L  E
Sbjct: 213 VTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNE 272

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRAL--CLI 257
               G+      Y  L+ G C     +   K+L+ M+ +K         +   AL  C +
Sbjct: 273 MEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDV----VAFSALIDCFV 328

Query: 258 KNPT--ELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA 315
           K     E   +   M+Q    PD +T  ++I+GFCK  ++++A  +L D++  K C P+ 
Sbjct: 329 KEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHML-DLMVSKGCGPNI 387

Query: 316 VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN 375
            TF  +I G      I + L L ++ M  RG     VTYN +++G   L ++E AKE+F 
Sbjct: 388 RTFNILINGYCKANLIDDGLEL-FRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQ 446

Query: 376 CMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG 435
            M+   V  D  +Y I++DGLC++ + ++A   ++ I       D  +Y  +I G+C + 
Sbjct: 447 EMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNAS 506

Query: 436 KIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWR 495
           K+ +A      L   GV P++  YN++I G CK     EA  + R+M ++G +P+  T+ 
Sbjct: 507 KVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYN 566

Query: 496 ILDKLHGNRGN 506
           IL + H   G+
Sbjct: 567 ILIRAHLGEGD 577



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 99/391 (25%), Positives = 185/391 (47%), Gaps = 2/391 (0%)

Query: 107 FANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMR 166
           F+ L   + R    + V  + + M      +  +    MI+  CR  +   A   +  + 
Sbjct: 75  FSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKII 134

Query: 167 KRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLE 226
           K G  P  V+++++++GLC  G    A +L++  ++ G+ P+  T   LV GLC    + 
Sbjct: 135 KLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVS 194

Query: 227 KARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVI 286
            A  ++  M+              L+ +C        + +L  M + + + D +  + +I
Sbjct: 195 DAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIII 254

Query: 287 NGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
           +G CK G ++ A  + N+M    F A D + +TT+I G    GR  +   LL   M +R 
Sbjct: 255 DGLCKDGSLDNAFNLFNEMEIKGFKA-DIIIYTTLIRGFCYAGRWDDGAKLLRD-MIKRK 312

Query: 347 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
            +P +V ++A++    +  ++ EA+E+   M+  G+  D+ TY  +IDG C+ NQLD+A 
Sbjct: 313 ITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKAN 372

Query: 407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466
              D +V      +   +  +I G C++  I + +    ++   GV  + V YN +I G 
Sbjct: 373 HMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGF 432

Query: 467 CKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           C+L     A ++ +EM    + PD V+++IL
Sbjct: 433 CELGKLEVAKELFQEMVSRRVRPDIVSYKIL 463



 Score =  144 bits (364), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 115/503 (22%), Positives = 218/503 (43%), Gaps = 36/503 (7%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    +  A  LF +M+ +G   +++ YTTLI G+C  G  D   K+  +M    +
Sbjct: 254 IDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKI 313

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ + +S L+   ++   +  A  L  ++ +R      +S +   + +L+D  C+E  +
Sbjct: 314 TPDVVAFSALIDCFVKEGKLREAEELHKEMIQR-----GISPDTVTYTSLIDGFCKENQL 368

Query: 121 NEVFRIAEDM------PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSL 174
           ++   + + M      P  ++ N       +I+  C++        +   M  RG+    
Sbjct: 369 DKANHMLDLMVSKGCGPNIRTFN------ILINGYCKANLIDDGLELFRKMSLRGVVADT 422

Query: 175 VSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQF 234
           V+YN+++ G C+ G    A +L +E +     P   +YK+L++GLC   + EKA ++ + 
Sbjct: 423 VTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEK 482

Query: 235 MLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGR 294
           +   K      I NI +  +C      +  ++   +     +PDV T N +I G CK G 
Sbjct: 483 IEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGS 542

Query: 295 IEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTY 354
           + EA  +   M      +P+  T+  +I   L  G   ++  L+ ++  + G+S    T 
Sbjct: 543 LSEADLLFRKMEEDGH-SPNGCTYNILIRAHLGEGDATKSAKLIEEI-KRCGFSVDASTL 600

Query: 355 NAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLC--ESNQLDEAKRFWDDI 412
              L  L R+ +     +VF             T+  ++   C  E+  + +A   + ++
Sbjct: 601 RFALSTLARMLKAGHEPDVF-------------TFTTLLRPFCLEENASVYDAPTLFKNM 647

Query: 413 VWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMK 472
                  +   Y  +IKGL     I +    L ++ + G  PN V  +  I G CK  + 
Sbjct: 648 KAMGYKPNVVTYNTVIKGLLNGNMISQVPGVLDQMFERGCQPNAVTKSTFISGLCKQDLH 707

Query: 473 REAYQILREMRKNGLNPDAVTWR 495
             A  +LR+M  +  N D  T +
Sbjct: 708 GSAILLLRKMEND--NEDVTTKK 728


>gi|326505340|dbj|BAK03057.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326511084|dbj|BAJ91889.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518326|dbj|BAJ88192.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518558|dbj|BAJ88308.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 556

 Score =  199 bits (505), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 122/395 (30%), Positives = 193/395 (48%), Gaps = 11/395 (2%)

Query: 104 NAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVY 163
           +AA  + +  L R G + E  R+ E M  G   +    C  +I  LC SGR   A RV+ 
Sbjct: 56  SAASNDRLRVLVRRGDLEEAIRLVESM-AGLEPSAAGPCAALIKKLCASGRTAEARRVLA 114

Query: 164 VMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGES 223
                   P ++SYN++V G C  G    A +L+         P  +TY  L+ GLCG  
Sbjct: 115 -----SCEPDVMSYNAMVAGYCVTGQLDNARRLVA---AMPMEPDTYTYNTLIRGLCGRG 166

Query: 224 DLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLN 283
             + A  VL  ML +  V       I L A C      + + +L  M    C PD++T N
Sbjct: 167 RTDNALAVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAVKLLDEMRDKGCAPDIVTYN 226

Query: 284 TVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMP 343
            V+NG C+ GR+++A++ L  +     C P+ V++  ++ GL    R ++A  L+ + M 
Sbjct: 227 VVVNGICQEGRVDDAMEFLKSL-PSYGCEPNTVSYNIVLKGLCTAERWEDAEKLMAE-MS 284

Query: 344 QRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLD 403
           ++G  P +VT+N ++  L R   VE A E+ + +   G   +S +Y  ++   C+  ++D
Sbjct: 285 RKGRPPNVVTFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPILHAFCKQKKMD 344

Query: 404 EAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463
            A  F + +V      D   Y  ++  LCR G++  AV  L++L D G TP ++ YN VI
Sbjct: 345 RAMAFVELMVSSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVI 404

Query: 464 DGACKLSMKREAYQILREMRKNGLNPDAVTWRILD 498
           DG  K     EA ++L EM   GL PD +T+  + 
Sbjct: 405 DGLTKAGKTEEALELLNEMVTKGLQPDIITYSTIS 439



 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 132/516 (25%), Positives = 248/516 (48%), Gaps = 67/516 (12%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           + +LC   R  EA ++    +     P+V+SY  ++ GYC TG++D A ++   M    +
Sbjct: 97  IKKLCASGRTAEARRVLASCE-----PDVMSYNAMVAGYCVTGQLDNARRLVAAM---PM 148

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P++ TY+ L+RG                                        LC  G  
Sbjct: 149 EPDTYTYNTLIRG----------------------------------------LCGRGRT 168

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +    + +DM +   V +      ++++ C+      A +++  MR +G  P +V+YN +
Sbjct: 169 DNALAVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAVKLLDEMRDKGCAPDIVTYNVV 228

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           V+G+C+ G    A + L+    +G  P+  +Y ++++GLC     E A K++  M  K  
Sbjct: 229 VNGICQEGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSRKGR 288

Query: 241 VDRTRICNIYLRALC---LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
                  N+ +  LC   L++   E+L+ +    +  C P+ ++ N +++ FCK  +++ 
Sbjct: 289 PPNVVTFNMLISFLCRRGLVEPAMEILDQIP---KYGCTPNSLSYNPILHAFCKQKKMDR 345

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           A+  +  MV+   C PD V++ T++  L   G +  A+ LL+Q +  +G +P +++YN V
Sbjct: 346 AMAFVELMVSSG-CYPDIVSYNTLLTALCRGGEVDAAVELLHQ-LKDKGCTPVLISYNTV 403

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 417
           + GL +  + EEA E+ N M+  G+  D  TY+ +  GLC   +++EA + +   V    
Sbjct: 404 IDGLTKAGKTEEALELLNEMVTKGLQPDIITYSTISSGLCREGRIEEAIKAFCK-VQDMG 462

Query: 418 IHDNYV-YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAY 476
           I  N V Y A++ GLC+    H A+     +V +G  PN   Y ++I+G     + +EA 
Sbjct: 463 IRPNTVLYNAILLGLCKRRATHSAIDLFTYMVSNGCMPNESTYTILIEGLAYEGLVKEAR 522

Query: 477 QILREMRKNG------LNPDAVTWRILD-KLHGNRG 505
           +++ E+   G      +N  A+  R+LD  +H ++G
Sbjct: 523 EMMAELCSRGVVSKTLVNKGAI--RLLDGTMHTSKG 556



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 66/221 (29%), Positives = 107/221 (48%), Gaps = 10/221 (4%)

Query: 285 VINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ 344
           +I   C  GR  EA +VL        C PD +++  ++ G    G++  A  L+   MP 
Sbjct: 96  LIKKLCASGRTAEARRVLAS------CEPDVMSYNAMVAGYCVTGQLDNARRLV-AAMPM 148

Query: 345 RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 404
               P   TYN ++RGL    R + A  V + ML  G V D  TY I+++  C+ +   +
Sbjct: 149 E---PDTYTYNTLIRGLCGRGRTDNALAVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQ 205

Query: 405 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
           A +  D++       D   Y  ++ G+C+ G++ +A+ FL  L   G  PN V YN+V+ 
Sbjct: 206 AVKLLDEMRDKGCAPDIVTYNVVVNGICQEGRVDDAMEFLKSLPSYGCEPNTVSYNIVLK 265

Query: 465 GACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
           G C      +A +++ EM + G  P+ VT+ +L      RG
Sbjct: 266 GLCTAERWEDAEKLMAEMSRKGRPPNVVTFNMLISFLCRRG 306


>gi|357502217|ref|XP_003621397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496412|gb|AES77615.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 550

 Score =  199 bits (505), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 131/495 (26%), Positives = 248/495 (50%), Gaps = 62/495 (12%)

Query: 13  AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVR 72
           A  L   ++ +G  P +V++  L++ YC  GEM  A+ +F ++   G  P ++T++ L+ 
Sbjct: 78  AISLSHQLELKGITPTIVTFNILVNCYCHLGEMTFAFSIFAKILKLGYHPTTITFNTLIN 137

Query: 73  GVLRTRDVERANVLMFKLWERMKEEEDL-----SVNNAAFANLVDSLCREGYVNEVFRIA 127
           G+           L  KL E +   + +      ++  ++  L++ LC+ G      ++ 
Sbjct: 138 GI----------CLNGKLKEALHFHDHVIALGFHLDQVSYRTLINGLCKIGETRAALQML 187

Query: 128 EDMPQGKSVNEEFACGHMI-DSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK 186
           + + +GK VN +    ++I +SLC+      A ++   M  + ++P +V++NS++ G C 
Sbjct: 188 KKI-EGKLVNTDVVMYNIIINSLCKDKAVSDAYQLYSEMITKRISPDVVTFNSLILGFCV 246

Query: 187 HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRI 246
            G    A+ L  E +     P  +T+ +LV+ LC + ++ +A+                 
Sbjct: 247 VGQLKEAFGLFHEMVLKNINPDVYTFSILVDALCKDGNITRAK----------------- 289

Query: 247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV 306
                             N+L  M++    PDV+T +++++G+C +  + +A  V + M 
Sbjct: 290 ------------------NMLAVMMKQGVIPDVVTYSSLMDGYCLVNEVNKAKHVFSTM- 330

Query: 307 AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 366
           +    AP A ++  +I GL  +  + EAL+L ++ M  +G +P  VTYN+++ GL +L R
Sbjct: 331 SRLGVAPHAHSYNIMINGLGKIKMVDEALSL-FKEMCCKGIAPDTVTYNSLIDGLCKLGR 389

Query: 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA----KRFWDDIVWPSNIHDNY 422
           +  A ++ + M   G+ AD  TY  +ID LC+++ +D+A    K+  D  + PS     Y
Sbjct: 390 ISYAWQLVDEMHNNGIPADILTYNSLIDVLCKNHHIDKAIALVKKIKDQGIQPSM----Y 445

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
            Y  +I GLC+ G++  A     +L+  G + N   YN++I+G CK  +  EA  +L +M
Sbjct: 446 TYNILIDGLCKGGRLKNAQDVFQDLLIKGYSVNAWTYNIMINGLCKEGLFNEAEVLLSKM 505

Query: 483 RKNGLNPDAVTWRIL 497
             NG+ PDAVT+  +
Sbjct: 506 ENNGIIPDAVTYETI 520



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 117/448 (26%), Positives = 218/448 (48%), Gaps = 7/448 (1%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C L  +  A  +F  +   G+ P  +++ TLI+G C  G++  A    D +   G   + 
Sbjct: 105 CHLGEMTFAFSIFAKILKLGYHPTTITFNTLINGICLNGKLKEALHFHDHVIALGFHLDQ 164

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           ++Y  L+ G+ +  +  RA + M K  E      D+ + N     +++SLC++  V++ +
Sbjct: 165 VSYRTLINGLCKIGET-RAALQMLKKIEGKLVNTDVVMYNI----IINSLCKDKAVSDAY 219

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
           ++  +M   +   +      +I   C  G+   A  + + M  + + P + +++ +V  L
Sbjct: 220 QLYSEMITKRISPDVVTFNSLILGFCVVGQLKEAFGLFHEMVLKNINPDVYTFSILVDAL 279

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
           CK G   RA  +L   ++ G +P   TY  L++G C  +++ KA+ V   M         
Sbjct: 280 CKDGNITRAKNMLAVMMKQGVIPDVVTYSSLMDGYCLVNEVNKAKHVFSTMSRLGVAPHA 339

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
              NI +  L  IK   E L++   M      PD +T N++I+G CK+GRI  A +++++
Sbjct: 340 HSYNIMINGLGKIKMVDEALSLFKEMCCKGIAPDTVTYNSLIDGLCKLGRISYAWQLVDE 399

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
           M      A D +T+ ++I  L     I +A+ L+ ++  Q G  P + TYN ++ GL + 
Sbjct: 400 MHNNGIPA-DILTYNSLIDVLCKNHHIDKAIALVKKIKDQ-GIQPSMYTYNILIDGLCKG 457

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY 424
            R++ A++VF  +L  G   ++ TY I+I+GLC+    +EA+     +     I D   Y
Sbjct: 458 GRLKNAQDVFQDLLIKGYSVNAWTYNIMINGLCKEGLFNEAEVLLSKMENNGIIPDAVTY 517

Query: 425 AAMIKGLCRSGKIHEAVHFLYELVDSGV 452
             +I+ L R  +  +A   L E++  G+
Sbjct: 518 ETIIRALFRKDENEKAEKLLREMIIRGL 545



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 100/383 (26%), Positives = 178/383 (46%), Gaps = 42/383 (10%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC    V +A++L+ +M ++   P+VV++ +LI G+C  G++  A+ +F EM    +
Sbjct: 206 INSLCKDKAVSDAYQLYSEMITKRISPDVVTFNSLILGFCVVGQLKEAFGLFHEMVLKNI 265

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+  T+S+LV  + +  ++ RA  ++  + +     + +  +   +++L+D  C    V
Sbjct: 266 NPDVYTFSILVDALCKDGNITRAKNMLAVMMK-----QGVIPDVVTYSSLMDGYCLVNEV 320

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           N+   +   M +        +   MI+ L +      A  +   M  +G+ P  V+YNS+
Sbjct: 321 NKAKHVFSTMSRLGVAPHAHSYNIMINGLGKIKMVDEALSLFKEMCCKGIAPDTVTYNSL 380

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GLCK G    A+QL++E    G      TY  L++ LC    ++KA       L KK 
Sbjct: 381 IDGLCKLGRISYAWQLVDEMHNNGIPADILTYNSLIDVLCKNHHIDKA-----IALVKKI 435

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
            D+                                QP + T N +I+G CK GR++ A  
Sbjct: 436 KDQ------------------------------GIQPSMYTYNILIDGLCKGGRLKNAQD 465

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           V  D++   +   +A T+  +I GL   G   EA  LL + M   G  P  VTY  ++R 
Sbjct: 466 VFQDLLIKGYSV-NAWTYNIMINGLCKEGLFNEAEVLLSK-MENNGIIPDAVTYETIIRA 523

Query: 361 LFRLRRVEEAKEVFNCMLGIGVV 383
           LFR    E+A+++   M+  G++
Sbjct: 524 LFRKDENEKAEKLLREMIIRGLL 546



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 111/211 (52%), Gaps = 7/211 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ L  +  V EA  LF +M  +G  P+ V+Y +LI G C+ G +  A+++ DEM + G+
Sbjct: 346 INGLGKIKMVDEALSLFKEMCCKGIAPDTVTYNSLIDGLCKLGRISYAWQLVDEMHNNGI 405

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             + LTY+ L+  + +   +++A  L+ K+     +++ +  +   +  L+D LC+ G +
Sbjct: 406 PADILTYNSLIDVLCKNHHIDKAIALVKKI-----KDQGIQPSMYTYNILIDGLCKGGRL 460

Query: 121 NEVFRIAEDM-PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
                + +D+  +G SVN  +    MI+ LC+ G  + A  ++  M   G+ P  V+Y +
Sbjct: 461 KNAQDVFQDLLIKGYSVNA-WTYNIMINGLCKEGLFNEAEVLLSKMENNGIIPDAVTYET 519

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
           I+  L +     +A +LL E I  G L  +H
Sbjct: 520 IIRALFRKDENEKAEKLLREMIIRGLLLCKH 550


>gi|297806115|ref|XP_002870941.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316778|gb|EFH47200.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 719

 Score =  198 bits (504), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 125/497 (25%), Positives = 245/497 (49%), Gaps = 13/497 (2%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           ++ EA++ F  ++S+G+  ++ +   LI    R G +++A++++ E+   GV  N  T +
Sbjct: 170 KLREAYEAFTLLRSKGYTVSIDACNALIGSLVRIGWVELAWRIYQEISRSGVGVNVYTLN 229

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
           ++V  + +   +E+    + ++     +E+ +  +   +  L+ +   +G + E F +  
Sbjct: 230 IMVNALCKDGKMEKVGTFLSEV-----QEKGVYPDIVTYNTLISAYSSQGLMEEAFELMH 284

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
            MP        +    +I+ LC+ G+   A  V   M + GL+P   +Y S++   CK G
Sbjct: 285 AMPSKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKG 344

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
             +    +  +      +P    +  ++       +L+KA      +     +    I  
Sbjct: 345 DAVETENIFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYT 404

Query: 249 IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA- 307
           I ++  C     +E +N+   MLQ  C  DV+T NT+++G CK   + EA K+ N+M   
Sbjct: 405 ILIQGYCRKGMISEAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTER 464

Query: 308 GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRV 367
           G F  PD+ T T +I G   +G +Q A+ L ++ M ++     +VTYN +L G  ++  +
Sbjct: 465 GLF--PDSYTLTILIDGHCKLGNLQNAMEL-FKKMKEKRIKLDVVTYNTLLDGFGKVGDI 521

Query: 368 EEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAM 427
           + AKE++  M+   ++    +++I+++ LC    L EA R WD+++  S      +  +M
Sbjct: 522 DTAKEIWADMVSKEILPTPISFSILVNALCSKGHLSEAFRVWDEMISKSIKPTVMICNSM 581

Query: 428 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM--RKN 485
           IKG CRSG   +   FL +++  G  P+ + YN +I G  K     +A+ ++++M  ++ 
Sbjct: 582 IKGYCRSGNASDGEIFLEKMISEGFVPDCISYNTLIYGFVKEENMSKAFGLVKKMEEKQG 641

Query: 486 GLNPDAVTWRILDKLHG 502
           GL PD  T+  +  LHG
Sbjct: 642 GLVPDVFTYNSI--LHG 656



 Score =  171 bits (434), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 118/492 (23%), Positives = 223/492 (45%), Gaps = 9/492 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   ++ +      +++ +G  P++V+Y TLI  Y   G M+ A+++   M   G 
Sbjct: 232 VNALCKDGKMEKVGTFLSEVQEKGVYPDIVTYNTLISAYSSQGLMEEAFELMHAMPSKGF 291

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P   TY+ ++ G+ +    ERA  +  ++         LS ++  + +L+   C++G  
Sbjct: 292 SPGVYTYNTVINGLCKHGKYERAKEVFAEML-----RSGLSPDSTTYRSLLMEACKKGDA 346

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E   I  DM     V +      M+    RSG    A      +++ GL P  V Y  +
Sbjct: 347 VETENIFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTIL 406

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G C+ G    A  L  E +Q G      TY  ++ GLC    L +A K+   M  +  
Sbjct: 407 IQGYCRKGMISEAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERGL 466

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
              +    I +   C + N    + +   M + + + DV+T NT+++GF K+G I+ A +
Sbjct: 467 FPDSYTLTILIDGHCKLGNLQNAMELFKKMKEKRIKLDVVTYNTLLDGFGKVGDIDTAKE 526

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +  DMV+ K   P  ++F+ ++  L + G + EA   ++  M  +   P ++  N++++G
Sbjct: 527 IWADMVS-KEILPTPISFSILVNALCSKGHLSEAFR-VWDEMISKSIKPTVMICNSMIKG 584

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN--I 418
             R     + +     M+  G V D  +Y  +I G  +   + +A      +       +
Sbjct: 585 YCRSGNASDGEIFLEKMISEGFVPDCISYNTLIYGFVKEENMSKAFGLVKKMEEKQGGLV 644

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI 478
            D + Y +++ G CR  ++ EA   L ++++ GV P+   Y  +I+G        EA++ 
Sbjct: 645 PDVFTYNSILHGFCRENQMKEAEAVLRKMIERGVNPDRSTYTSLINGFVSQDNLTEAFRF 704

Query: 479 LREMRKNGLNPD 490
             EM + G +PD
Sbjct: 705 HDEMLQRGFSPD 716



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 127/510 (24%), Positives = 239/510 (46%), Gaps = 28/510 (5%)

Query: 15  KLFFDMKSRGHVPNVVSYTTLIHGYCRTGEM-DVAYKVFDEMRHCGV----LPNSL--TY 67
           +L F+  +  H    +S + +IH   R+G + D    V   +R  GV    + NSL  TY
Sbjct: 91  QLGFNFPNFKHTS--LSLSAMIHILVRSGRLSDAQSCVLRMIRRSGVSRVEIVNSLVSTY 148

Query: 68  S----------VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCRE 117
           S          +L+R  ++ R +  A    ++ +  ++ +   +V+  A   L+ SL R 
Sbjct: 149 SNCGSNDSVFDLLIRTFVQARKLREA----YEAFTLLRSK-GYTVSIDACNALIGSLVRI 203

Query: 118 GYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
           G+V   +RI +++ +       +    M+++LC+ G+       +  ++++G+ P +V+Y
Sbjct: 204 GWVELAWRIYQEISRSGVGVNVYTLNIMVNALCKDGKMEKVGTFLSEVQEKGVYPDIVTY 263

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFML- 236
           N+++      G    A++L+      G+ P  +TY  ++ GLC     E+A++V   ML 
Sbjct: 264 NTLISAYSSQGLMEEAFELMHAMPSKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLR 323

Query: 237 SKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIE 296
           S    D T   ++ + A C   +  E  N+   M      PD++  +++++ F + G ++
Sbjct: 324 SGLSPDSTTYRSLLMEA-CKKGDAVETENIFSDMRSRDVVPDLVCFSSMMSLFTRSGNLD 382

Query: 297 EALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
           +AL   N +       PD V +T +I G    G I EA+NL  + M Q+G +  +VTYN 
Sbjct: 383 KALMYFNSVKEAGLI-PDNVIYTILIQGYCRKGMISEAMNLRNE-MLQQGCAMDVVTYNT 440

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416
           +L GL + + + EA ++FN M   G+  DS T  I+IDG C+   L  A   +  +    
Sbjct: 441 ILHGLCKRKMLGEADKLFNEMTERGLFPDSYTLTILIDGHCKLGNLQNAMELFKKMKEKR 500

Query: 417 NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAY 476
              D   Y  ++ G  + G I  A     ++V   + P  + ++++++  C      EA+
Sbjct: 501 IKLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISFSILVNALCSKGHLSEAF 560

Query: 477 QILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           ++  EM    + P  +    + K +   GN
Sbjct: 561 RVWDEMISKSIKPTVMICNSMIKGYCRSGN 590


>gi|413920484|gb|AFW60416.1| hypothetical protein ZEAMMB73_230014 [Zea mays]
          Length = 700

 Score =  198 bits (504), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 133/492 (27%), Positives = 241/492 (48%), Gaps = 14/492 (2%)

Query: 4   LCGLSRVG---EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           + GL R G   +A K+F +M   G VPN ++Y T+I G+ + G+++  +++ D+M H G 
Sbjct: 201 IAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAGFRLRDQMLHDGP 260

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +TY+VL+ G+ R   ++   VLM ++         +  +   ++ L D L R G  
Sbjct: 261 KPNIVTYNVLLSGLCRAGRMDETRVLMDEM-----ASHSMFPDGFTYSILFDGLTRTGES 315

Query: 121 NEVFRI-AEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
             +  + AE + +G  +   + C  +++ LC+ G+   A +V+ ++   GL P+ V YN+
Sbjct: 316 RTMLSLFAESLKKGVMLG-AYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNT 374

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           +++G C+      A+ + E+       P   TY  L+ GLC    + KA  ++  M  K 
Sbjct: 375 LINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEM-EKS 433

Query: 240 DVDRT-RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
            VD +    N  + A        +   VL  M Q   + DVI+  +V+  FCK G+I EA
Sbjct: 434 GVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEA 493

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
           + +L+DM+  K  AP+A  + +II   +  G  ++A  LL + M   G S  IVTYN +L
Sbjct: 494 VAILDDMIY-KDVAPNAQVYNSIIDAYIESGDTEQAF-LLVEKMKNSGVSASIVTYNLLL 551

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
           +GL R  +++EA+E+   +   G+  D  +Y  +I   C     D+A     ++      
Sbjct: 552 KGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIR 611

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI 478
                Y  ++  L  +G++H+      +++   V P+   Y +++D   +     +   +
Sbjct: 612 PTLRTYHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYVRCENDSKVASL 671

Query: 479 LREMRKNGLNPD 490
            +EM + G+  D
Sbjct: 672 KKEMSEKGIAFD 683



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 119/471 (25%), Positives = 212/471 (45%), Gaps = 42/471 (8%)

Query: 27  PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVL 86
           P+  SY  +I G  R+G+   A KVFDEM   GV+PN +TY+ ++ G ++  D+E     
Sbjct: 192 PDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAG--- 248

Query: 87  MFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMI 146
            F+L ++M                                  D P+   V        ++
Sbjct: 249 -FRLRDQM--------------------------------LHDGPKPNIVTYNV----LL 271

Query: 147 DSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL 206
             LCR+GR      ++  M    + P   +Y+ +  GL + G       L  E ++ G +
Sbjct: 272 SGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTRTGESRTMLSLFAESLKKGVM 331

Query: 207 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 266
              +T  +L+ GLC +  + KA +VL+ ++    V  T I N  +   C +++      +
Sbjct: 332 LGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCI 391

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
              M     +PD IT N +ING CK+  + +A  ++ +M       P   TF T+I    
Sbjct: 392 FEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGV-DPSVETFNTLIDAYG 450

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
             G++++   +L   M Q+G    ++++ +V++   +  ++ EA  + + M+   V  ++
Sbjct: 451 TAGQLEKCFTVLSD-MQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNA 509

Query: 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE 446
             Y  +ID   ES   ++A    + +           Y  ++KGLCRS +I EA   +Y 
Sbjct: 510 QVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYT 569

Query: 447 LVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           L + G+ P++V YN +I   C      +A ++L+EM K G+ P   T+  L
Sbjct: 570 LRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTL 620



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 113/482 (23%), Positives = 217/482 (45%), Gaps = 7/482 (1%)

Query: 26  VPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANV 85
           +P++ S   L+      G        F  +   G  P++  ++ +V+  +   D++ A  
Sbjct: 119 LPSLSSCNLLLESLLFVGRHADVRAAFGLLVAAGARPDTFAWNKVVQACVAAGDLDVA-- 176

Query: 86  LMFKLWERMKEEEDLSVNNAAFANLV-DSLCREGYVNEVFRIAEDMPQGKSVNEEFACGH 144
               +  RM   E     +A   N+V   L R G  ++  ++ ++M     V        
Sbjct: 177 --LAMVRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNT 234

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
           MID   + G      R+   M   G  P++V+YN ++ GLC+ G       L++E     
Sbjct: 235 MIDGHVKGGDLEAGFRLRDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHS 294

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL 264
             P   TY +L +GL    +      +    L K  +     C+I L  LC      +  
Sbjct: 295 MFPDGFTYSILFDGLTRTGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAE 354

Query: 265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 324
            VL  ++ T   P  +  NT+ING+C++  +  A  +   M + +   PD +T+  +I G
Sbjct: 355 QVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKS-RHIRPDHITYNALING 413

Query: 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 384
           L  +  + +A +L+ + M + G  P + T+N ++       ++E+   V + M   G+ +
Sbjct: 414 LCKLEMVTKAEDLVME-MEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKS 472

Query: 385 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFL 444
           D  ++  V+   C++ ++ EA    DD+++     +  VY ++I     SG   +A   +
Sbjct: 473 DVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLV 532

Query: 445 YELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNR 504
            ++ +SGV+ +IV YN+++ G C+ S   EA +++  +R  GL PD V++  +     N+
Sbjct: 533 EKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNK 592

Query: 505 GN 506
           G+
Sbjct: 593 GD 594


>gi|125557843|gb|EAZ03379.1| hypothetical protein OsI_25524 [Oryza sativa Indica Group]
          Length = 716

 Score =  198 bits (504), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 126/496 (25%), Positives = 245/496 (49%), Gaps = 12/496 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R+GEA +LF  M++   VP   +Y T+I GY   G  + AYK+ + +R  G +P+
Sbjct: 160 LCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPS 219

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            ++++ ++  + + R V+ A      L+E MK+  D   N++ +  ++D LC  G V E 
Sbjct: 220 VVSFNSILTCLGKKRKVDEA----LSLFEVMKK--DAEPNSSTYNIIIDMLCLGGRVEEA 273

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           +RI ++M              M+D LC++ +   A ++     +RG  P  V+Y S++ G
Sbjct: 274 YRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDG 333

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           L K G    AY+L E+ +  G+  +   Y  L+         E   KV + ++ +     
Sbjct: 334 LGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKVFKELIRRGCKPD 393

Query: 244 TRICNIYLRALCLIKNPTELLNVLVF--MLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
             + N Y+   C+ K        ++F  +      PDV + + +I+G  K G+  E   +
Sbjct: 394 LTLLNTYMD--CVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNI 451

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
            + M    F A DA  +  ++ G    G++ +A  +L + M ++   P + TY A++ GL
Sbjct: 452 FHAMKQQGF-ALDARAYNAVVDGFCKSGKVHKAYEILEE-MKEKCVQPTVATYGAIVDGL 509

Query: 362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
            ++ R++EA  +F      G+  +   Y+ +IDG  +  ++DEA    ++++      + 
Sbjct: 510 AKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNV 569

Query: 422 YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
           Y + +++  L ++ +I+EA+     + +    PN   Y+++I+G C++    +A+   ++
Sbjct: 570 YTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQD 629

Query: 482 MRKNGLNPDAVTWRIL 497
           M+K GL P+ VT+  +
Sbjct: 630 MQKQGLVPNVVTYTTM 645



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 122/469 (26%), Positives = 218/469 (46%), Gaps = 8/469 (1%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           +V EA  LF  MK     PN  +Y  +I   C  G ++ AY++ DEM H  + PN LT +
Sbjct: 235 KVDEALSLFEVMKKDAE-PNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVN 293

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
           ++V  + + R +E A    +K++E    +   + +   + +L+D L ++G V+E +R+ E
Sbjct: 294 IMVDRLCKARKLEEA----YKIFES-ASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFE 348

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
            M              +I +    GR     +V   + +RG  P L   N+ +  + K G
Sbjct: 349 KMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKVFKELIRRGCKPDLTLLNTYMDCVFKAG 408

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
              +   + E+   +G+LP   +Y +L+ GL       +   +   M  +      R  N
Sbjct: 409 EVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYN 468

Query: 249 IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 308
             +   C      +   +L  M +   QP V T   +++G  K+ R++EA  +  +    
Sbjct: 469 AVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEE-AKS 527

Query: 309 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE 368
           K    + V ++++I G   VGRI EA  +L ++M ++G +P + T+N++L  L +   + 
Sbjct: 528 KGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMM-KKGLTPNVYTWNSLLDALVKAEEIN 586

Query: 369 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI 428
           EA   F  M  +    ++ TY+I+I+GLC   + ++A  FW D+     + +   Y  MI
Sbjct: 587 EALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMI 646

Query: 429 KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQ 477
            GL + G I +A         +G  P+   +N +I+G    +   EAYQ
Sbjct: 647 SGLAKVGNITDAYSLFERFKANGGIPDAASFNALIEGMSNANRAMEAYQ 695



 Score =  181 bits (459), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 128/498 (25%), Positives = 236/498 (47%), Gaps = 10/498 (2%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           R   A +L   M+  G+   V  +TTL+    R G++  A  + DE++   + P+ + Y+
Sbjct: 60  RPERALELLRQMQEVGYEVGVHLFTTLVRALAREGQVADALALVDEVKGSCLEPDIVLYN 119

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
           V +    +  +V+ A     K +  +K +  L  ++ ++ +++  LC+ G + E   +  
Sbjct: 120 VCIDCFGKAGNVDMA----CKFFHELKAQ-GLKPDDVSYTSMIWVLCKAGRLGEAEELFA 174

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
            M   +SV   +A   MI     +GR   A +++  +R+RG  PS+VS+NSI+  L K  
Sbjct: 175 QMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKR 234

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
               A  L E  ++    P+  TY ++++ LC    +E+A ++L  M            N
Sbjct: 235 KVDEALSLFEV-MKKDAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVN 293

Query: 249 IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV-A 307
           I +  LC  +   E   +     Q  C PD +T  ++I+G  K G+++EA ++   M+ A
Sbjct: 294 IMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDA 353

Query: 308 GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRV 367
           G    P  V +T++I      GR ++   +  +++ +RG  P +   N  +  +F+   V
Sbjct: 354 GHNANP--VVYTSLIRNFFIHGRKEDGHKVFKELI-RRGCKPDLTLLNTYMDCVFKAGEV 410

Query: 368 EEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAM 427
           E+ + +F  +   G + D  +Y+I+I GL ++ Q  E    +  +       D   Y A+
Sbjct: 411 EKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAV 470

Query: 428 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
           + G C+SGK+H+A   L E+ +  V P +  Y  ++DG  K+    EAY +  E +  G+
Sbjct: 471 VDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGI 530

Query: 488 NPDAVTWRILDKLHGNRG 505
             + V +  L    G  G
Sbjct: 531 ELNVVLYSSLIDGFGKVG 548



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 129/503 (25%), Positives = 225/503 (44%), Gaps = 46/503 (9%)

Query: 35  LIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERM 94
           L     R   +D A      MR     P    Y+VL+  +   R  ERA  L+     R 
Sbjct: 16  LAAALVRARRLDDAVLAVAVMRRLKFRPAFSAYTVLIGALAEARRPERALELL-----RQ 70

Query: 95  KEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQ-----------------GKSVN 137
            +E    V    F  LV +L REG V +   + +++                   GK+ N
Sbjct: 71  MQEVGYEVGVHLFTTLVRALAREGQVADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGN 130

Query: 138 EEFACG------------------HMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
            + AC                    MI  LC++GR   A  +   M      P   +YN+
Sbjct: 131 VDMACKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNT 190

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++ G    G    AY+LLE   + G +PS  ++  ++  L  +  +++A  + + M  KK
Sbjct: 191 MIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVM--KK 248

Query: 240 DVD-RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
           D +  +   NI +  LCL     E   +L  M      P+++T+N +++  CK  ++EEA
Sbjct: 249 DAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEA 308

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
            K+  +  + + C PD VT+ ++I GL   G++ EA   L++ M   G++   V Y +++
Sbjct: 309 YKIF-ESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYR-LFEKMLDAGHNANPVVYTSLI 366

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
           R  F   R E+  +VF  ++  G   D T     +D + ++ ++++ +  ++DI     +
Sbjct: 367 RNFFIHGRKEDGHKVFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFL 426

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI 478
            D   Y+ +I GL ++G+  E  +  + +   G   +   YN V+DG CK     +AY+I
Sbjct: 427 PDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEI 486

Query: 479 LREMRKNGLNPDAVTW-RILDKL 500
           L EM++  + P   T+  I+D L
Sbjct: 487 LEEMKEKCVQPTVATYGAIVDGL 509



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 108/408 (26%), Positives = 202/408 (49%), Gaps = 13/408 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D+LC   ++ EA+K+F     RG  P+ V+Y +LI G  + G++D AY++F++M   G 
Sbjct: 296 VDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGH 355

Query: 61  LPNSLTYSVLVRGVL---RTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCRE 117
             N + Y+ L+R      R  D  +    +FK   R   + DL++ N      +D + + 
Sbjct: 356 NANPVVYTSLIRNFFIHGRKEDGHK----VFKELIRRGCKPDLTLLN----TYMDCVFKA 407

Query: 118 GYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
           G V +   I ED+     + +  +   +I  L ++G+    S + + M+++G      +Y
Sbjct: 408 GEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAY 467

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
           N++V G CK G   +AY++LEE  +    P+  TY  +V+GL     L++A  + +   S
Sbjct: 468 NAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKS 527

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
           K       + +  +     +    E   +L  M++    P+V T N++++   K   I E
Sbjct: 528 KGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINE 587

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           AL     M   K C P+  T++ +I GL  V +  +A  + +Q M ++G  P +VTY  +
Sbjct: 588 ALVCFQSMKEMK-CPPNTYTYSILINGLCRVQKYNKAF-VFWQDMQKQGLVPNVVTYTTM 645

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA 405
           + GL ++  + +A  +F      G + D+ ++  +I+G+  +N+  EA
Sbjct: 646 ISGLAKVGNITDAYSLFERFKANGGIPDAASFNALIEGMSNANRAMEA 693



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 98/367 (26%), Positives = 168/367 (45%), Gaps = 6/367 (1%)

Query: 141 ACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEG 200
           AC  +  +L R+ R   A   V VMR+    P+  +Y  ++  L +     RA +LL + 
Sbjct: 12  ACADLAAALVRARRLDDAVLAVAVMRRLKFRPAFSAYTVLIGALAEARRPERALELLRQM 71

Query: 201 IQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNP 260
            + GY    H +  LV  L  E  +  A  ++  +          + N+ +       N 
Sbjct: 72  QEVGYEVGVHLFTTLVRALAREGQVADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNV 131

Query: 261 TELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTT 320
                    +     +PD ++  ++I   CK GR+ EA ++   M A +   P A  + T
Sbjct: 132 DMACKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAER-SVPCAYAYNT 190

Query: 321 IIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI 380
           +I G  + GR ++A  LL + + +RG  P +V++N++L  L + R+V+EA  +F  M   
Sbjct: 191 MIMGYGSAGRFEDAYKLL-ERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKK- 248

Query: 381 GVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEA 440
               +S+TY I+ID LC   +++EA R  D++   S   +      M+  LC++ K+ EA
Sbjct: 249 DAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEA 308

Query: 441 VHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK- 499
                     G  P+ V Y  +IDG  K     EAY++  +M   G N + V +  L + 
Sbjct: 309 YKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRN 368

Query: 500 --LHGNR 504
             +HG +
Sbjct: 369 FFIHGRK 375



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 119/237 (50%), Gaps = 5/237 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C   +V +A+++  +MK +   P V +Y  ++ G  +   +D AY +F+E +  G+
Sbjct: 471 VDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGI 530

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             N + YS L+ G  +   ++ A ++   L E MK+   L+ N   + +L+D+L +   +
Sbjct: 531 ELNVVLYSSLIDGFGKVGRIDEAYLI---LEEMMKK--GLTPNVYTWNSLLDALVKAEEI 585

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           NE     + M + K     +    +I+ LCR  + + A      M+K+GL P++V+Y ++
Sbjct: 586 NEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTM 645

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
           + GL K G    AY L E     G +P   ++  L+EG+   +   +A +   + LS
Sbjct: 646 ISGLAKVGNITDAYSLFERFKANGGIPDAASFNALIEGMSNANRAMEAYQTTVYQLS 702



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 74/182 (40%), Gaps = 1/182 (0%)

Query: 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 383
            L+   R+ +A+ L   VM +  + P    Y  ++  L   RR E A E+   M  +G  
Sbjct: 19  ALVRARRLDDAV-LAVAVMRRLKFRPAFSAYTVLIGALAEARRPERALELLRQMQEVGYE 77

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
                +  ++  L    Q+ +A    D++       D  +Y   I    ++G +  A  F
Sbjct: 78  VGVHLFTTLVRALAREGQVADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMACKF 137

Query: 444 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGN 503
            +EL   G+ P+ V Y  +I   CK     EA ++  +M      P A  +  +   +G+
Sbjct: 138 FHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGS 197

Query: 504 RG 505
            G
Sbjct: 198 AG 199


>gi|449462479|ref|XP_004148968.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 580

 Score =  198 bits (504), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 139/501 (27%), Positives = 237/501 (47%), Gaps = 75/501 (14%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC ++R+ E    F  +  RG+ PN+V+Y TLI G C    +  A ++F  M+  G  P+
Sbjct: 114 LCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPD 173

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERM-----KEEEDLSVNNAAFANLVDSLCREG 118
            +TY  L++G+  T ++  A     KL + M     + E +   N   +  +VD LC+ G
Sbjct: 174 VVTYGTLIKGLCGTGNINIA----LKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVG 229

Query: 119 YVNEVFRIAEDM-PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
             +E  ++ E+M  QG   NE                          M  +GL P +V++
Sbjct: 230 REDEAKQLFEEMKTQGMIPNE--------------------------MLDQGLQPDMVTF 263

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
           N ++  LCK G  + A +LL   I+ G +P   TY  L+EG C   DL  AR++   M S
Sbjct: 264 NVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPS 323

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
           K                                    C+PDVI+ N +ING+ K  ++EE
Sbjct: 324 KG-----------------------------------CEPDVISYNVLINGYSKTLKVEE 348

Query: 298 ALKVLNDM-VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
           A+K+ N+M + GK   P+ +T+ +++ G+   G++ +A   L+ VM   G +    TY  
Sbjct: 349 AMKLYNEMLLVGK--RPNVITYDSLLKGIFLAGKVDDA-KKLFSVMKAHGIAENSYTYGI 405

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416
            L GL +   + EA ++F  +       +      +IDGLC++ +L+ A   ++ +    
Sbjct: 406 FLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEG 465

Query: 417 NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAY 476
           +  +   Y  MI G CR G++ +A   + ++  +G TP+I+ YN ++ G  + +   E  
Sbjct: 466 HEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITYNTLMRGFYESNKLEEVV 525

Query: 477 QILREMRKNGLNPDAVTWRIL 497
           Q+L  M +  ++PDA+T  I+
Sbjct: 526 QLLHRMAQKDVSPDAITCSIV 546



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 116/416 (27%), Positives = 208/416 (50%), Gaps = 21/416 (5%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRH------ 57
           LC   R+ EA +LF  M+  G  P+VV+Y TLI G C TG +++A K+  EM +      
Sbjct: 149 LCMEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYE 208

Query: 58  CGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEE---------EDLSVNNAAFA 108
               PN +TY+++V G+ +    + A     +L+E MK +         + L  +   F 
Sbjct: 209 INCKPNVITYNIIVDGLCKVGREDEAK----QLFEEMKTQGMIPNEMLDQGLQPDMVTFN 264

Query: 109 NLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKR 168
            L+D+LC+EG V E  ++   M +   V +      +I+  C  G  + A  +   M  +
Sbjct: 265 VLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSK 324

Query: 169 GLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKA 228
           G  P ++SYN +++G  K      A +L  E +  G  P+  TY  L++G+     ++ A
Sbjct: 325 GCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDA 384

Query: 229 RKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVING 288
           +K+   M +    + +    I+L  LC      E + +   +  +  + ++  LN +I+G
Sbjct: 385 KKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDG 444

Query: 289 FCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYS 348
            CK G++E A ++  + ++ +   P+ VT+T +I G    G++ +A N+L Q M   G +
Sbjct: 445 LCKAGKLETAWELF-EKLSNEGHEPNVVTYTIMIHGFCREGQVDKA-NVLIQKMEANGCT 502

Query: 349 PGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 404
           P I+TYN ++RG +   ++EE  ++ + M    V  D+ T +IV+D L +  +  E
Sbjct: 503 PDIITYNTLMRGFYESNKLEEVVQLLHRMAQKDVSPDAITCSIVVDMLSKDEKYQE 558



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 125/447 (27%), Positives = 216/447 (48%), Gaps = 31/447 (6%)

Query: 76  RTRDVERANVL-MFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGK 134
           +T +V   + L  F L  R      LS    +F +L+  L +  + ++VF +   M    
Sbjct: 44  KTGNVTATHALHFFHLMMRSTPTPSLS----SFNHLLSGLAKIKHYSQVFSLYNQMRLSG 99

Query: 135 SVNEEFACGHMIDSLCRSGR-NHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRA 193
             ++      +++ LC   R   G +    ++R RG +P++V+YN+++ GLC       A
Sbjct: 100 LSSDRCTLNILLNCLCNVNRLREGFAAFAGILR-RGYSPNIVTYNTLIKGLCMEHRISEA 158

Query: 194 YQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRI-C----- 247
            +L     + G  P   TY  L++GLCG  ++  A K+ Q ML+  D+ R  I C     
Sbjct: 159 TRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLN--DISRYEINCKPNVI 216

Query: 248 --NIYLRALCLIKNPTELLNVLVFM----------LQTQCQPDVITLNTVINGFCKMGRI 295
             NI +  LC +    E   +   M          L    QPD++T N +I+  CK G++
Sbjct: 217 TYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPNEMLDQGLQPDMVTFNVLIDTLCKEGKV 276

Query: 296 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN 355
            EA K+L  M+      PD VT+ ++I G   VG +  A  L +  MP +G  P +++YN
Sbjct: 277 IEAKKLLGVMIESGI-VPDLVTYNSLIEGFCMVGDLNSAREL-FVSMPSKGCEPDVISYN 334

Query: 356 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP 415
            ++ G  +  +VEEA +++N ML +G   +  TY  ++ G+  + ++D+AK+ +  +   
Sbjct: 335 VLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAH 394

Query: 416 SNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREA 475
               ++Y Y   + GLC++  + EA+    EL  S     I   N +IDG CK      A
Sbjct: 395 GIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETA 454

Query: 476 YQILREMRKNGLNPDAVTWRILDKLHG 502
           +++  ++   G  P+ VT+ I+  +HG
Sbjct: 455 WELFEKLSNEGHEPNVVTYTIM--IHG 479



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 130/527 (24%), Positives = 225/527 (42%), Gaps = 66/527 (12%)

Query: 5   CGLSRVGEAHKL-FFDMKSRGH-VPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           C    V   H L FF +  R    P++ S+  L+ G  +       + ++++MR  G+  
Sbjct: 43  CKTGNVTATHALHFFHLMMRSTPTPSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSS 102

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           +  T ++L+  +     +         +  R       S N   +  L+  LC E  ++E
Sbjct: 103 DRCTLNILLNCLCNVNRLREGFAAFAGILRR-----GYSPNIVTYNTLIKGLCMEHRISE 157

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKR------GLTPSLVS 176
             R+   M +     +    G +I  LC +G  + A ++   M            P++++
Sbjct: 158 ATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVIT 217

Query: 177 YNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH----------TYKVLVEGLCGESDLE 226
           YN IV GLCK G    A QL EE    G +P+E           T+ VL++ LC E  + 
Sbjct: 218 YNIIVDGLCKVGREDEAKQLFEEMKTQGMIPNEMLDQGLQPDMVTFNVLIDTLCKEGKVI 277

Query: 227 KARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVI 286
           +A+K+L  M+    V      N  +   C++ +      + V M    C+PDVI+ N +I
Sbjct: 278 EAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLI 337

Query: 287 NGFCKMGRIEEALKVLNDMV-AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQR 345
           NG+ K  ++EEA+K+ N+M+  GK   P+ +T+ +++ G+   G++ +A  L + VM   
Sbjct: 338 NGYSKTLKVEEAMKLYNEMLLVGK--RPNVITYDSLLKGIFLAGKVDDAKKL-FSVMKAH 394

Query: 346 GYSPGIVTYNAVLRGL--------------------FRLR---------------RVEEA 370
           G +    TY   L GL                    F+L                ++E A
Sbjct: 395 GIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETA 454

Query: 371 KEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKG 430
            E+F  +   G   +  TY I+I G C   Q+D+A      +       D   Y  +++G
Sbjct: 455 WELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITYNTLMRG 514

Query: 431 LCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQ 477
              S K+ E V  L+ +    V+P+ +  ++V+D    +  K E YQ
Sbjct: 515 FYESNKLEEVVQLLHRMAQKDVSPDAITCSIVVD----MLSKDEKYQ 557



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 94/350 (26%), Positives = 165/350 (47%), Gaps = 49/350 (14%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   +V EA KL   M   G VP++V+Y +LI G+C  G+++ A ++F  M   G 
Sbjct: 267 IDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGC 326

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSV----NNAAFANLVDSLCR 116
            P+ ++Y+VL+ G  +T  VE A     KL+  M     L V    N   + +L+  +  
Sbjct: 327 EPDVISYNVLINGYSKTLKVEEA----MKLYNEM-----LLVGKRPNVITYDSLLKGIFL 377

Query: 117 EGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVS 176
            G V++  ++   M         +  G  +D LC++     A ++   ++       + +
Sbjct: 378 AGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIEN 437

Query: 177 YNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFML 236
            N ++ GLCK G    A++L E+    G+ P+  TY +++ G C E  ++KA  ++Q M 
Sbjct: 438 LNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKME 497

Query: 237 SKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIE 296
           +                                     C PD+IT NT++ GF +  ++E
Sbjct: 498 ANG-----------------------------------CTPDIITYNTLMRGFYESNKLE 522

Query: 297 EALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
           E +++L+ M A K  +PDA+T + ++  L    + QE L+LL +   Q+G
Sbjct: 523 EVVQLLHRM-AQKDVSPDAITCSIVVDMLSKDEKYQECLHLLPRFPIQKG 571



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 117/273 (42%), Gaps = 30/273 (10%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C +  +  A +LF  M S+G  P+V+SY  LI+GY +T +++ A K+++EM   G 
Sbjct: 302 IEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGK 361

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFK-------------------------LWERMK 95
            PN +TY  L++G+     V+ A  L                            L+E MK
Sbjct: 362 RPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMK 421

Query: 96  EEEDLSVNNAAFA-----NLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC 150
              +L  +N          L+D LC+ G +   + + E +              MI   C
Sbjct: 422 LFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFC 481

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
           R G+   A+ ++  M   G TP +++YN+++ G  +        QLL    Q    P   
Sbjct: 482 REGQVDKANVLIQKMEANGCTPDIITYNTLMRGFYESNKLEEVVQLLHRMAQKDVSPDAI 541

Query: 211 TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           T  ++V+ L  +   ++   +L     +K VD+
Sbjct: 542 TCSIVVDMLSKDEKYQECLHLLPRFPIQKGVDK 574



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 76/144 (52%), Gaps = 5/144 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   ++  A +LF  + + GH PNVV+YT +IHG+CR G++D A  +  +M   G 
Sbjct: 442 IDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGC 501

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TY+ L+RG   +  +E     + +L  RM  ++D+S +    + +VD L ++   
Sbjct: 502 TPDIITYNTLMRGFYESNKLEE----VVQLLHRMA-QKDVSPDAITCSIVVDMLSKDEKY 556

Query: 121 NEVFRIAEDMPQGKSVNEEFACGH 144
            E   +    P  K V++     H
Sbjct: 557 QECLHLLPRFPIQKGVDKHLLMTH 580



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 71/169 (42%), Gaps = 35/169 (20%)

Query: 338 LYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLC 397
            + +M +   +P + ++N +L GL +++   +   ++N M   G+ +D  T  I+++ LC
Sbjct: 56  FFHLMMRSTPTPSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCTLNILLNCLC 115

Query: 398 ESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIV 457
             N+L E                   +AA    L R                 G +PNIV
Sbjct: 116 NVNRLREG------------------FAAFAGILRR-----------------GYSPNIV 140

Query: 458 CYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
            YN +I G C      EA ++   M+K G  PD VT+  L K     GN
Sbjct: 141 TYNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGN 189


>gi|222636757|gb|EEE66889.1| hypothetical protein OsJ_23712 [Oryza sativa Japonica Group]
          Length = 579

 Score =  198 bits (504), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 125/496 (25%), Positives = 245/496 (49%), Gaps = 12/496 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R+GEA +LF  M++   VP   +Y T+I GY   G  + AYK+ + +R  G +P+
Sbjct: 28  LCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPS 87

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            ++++ ++  + + R V+ A      L+E MK+  D   N++ +  ++D LC  G V E 
Sbjct: 88  VVSFNSILTCLGKKRKVDEA----LSLFEVMKK--DAEPNSSTYNIIIDMLCLGGRVEEA 141

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           +RI ++M              M+D LC++ +   A ++     +RG  P  V+Y S++ G
Sbjct: 142 YRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDG 201

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           L K G    AY+L E+ +  G+  +   Y  L+         E   K+ + ++ +     
Sbjct: 202 LGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRGCKPD 261

Query: 244 TRICNIYLRALCLIKNPTELLNVLVF--MLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
             + N Y+   C+ K        ++F  +      PDV + + +I+G  K G+  E   +
Sbjct: 262 LTLLNTYMD--CVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNI 319

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
            + M    F A DA  +  ++ G    G++ +A  +L + M ++   P + TY A++ GL
Sbjct: 320 FHAMKQQGF-ALDARAYNAVVDGFCKSGKVHKAYEIL-EEMKEKCVQPTVATYGAIVDGL 377

Query: 362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
            ++ R++EA  +F      G+  +   Y+ +IDG  +  ++DEA    ++++      + 
Sbjct: 378 AKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNV 437

Query: 422 YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
           Y + +++  L ++ +I+EA+     + +    PN   Y+++I+G C++    +A+   ++
Sbjct: 438 YTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQD 497

Query: 482 MRKNGLNPDAVTWRIL 497
           M+K GL P+ VT+  +
Sbjct: 498 MQKQGLVPNVVTYTTM 513



 Score =  191 bits (484), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 122/469 (26%), Positives = 219/469 (46%), Gaps = 8/469 (1%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           +V EA  LF  MK     PN  +Y  +I   C  G ++ AY++ DEM H  + PN LT +
Sbjct: 103 KVDEALSLFEVMKKDAE-PNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVN 161

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
           ++V  + + R +E A    +K++E    +   + +   + +L+D L ++G V+E +R+ E
Sbjct: 162 IMVDRLCKARKLEEA----YKIFES-ASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFE 216

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
            M              +I +    GR     ++   + +RG  P L   N+ +  + K G
Sbjct: 217 KMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFKAG 276

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
              +   + E+   +G+LP   +Y +L+ GL       +   +   M  +      R  N
Sbjct: 277 EVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYN 336

Query: 249 IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 308
             +   C      +   +L  M +   QP V T   +++G  K+ R++EA  +L +    
Sbjct: 337 AVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAY-MLFEEAKS 395

Query: 309 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE 368
           K    + V ++++I G   VGRI EA  +L ++M ++G +P + T+N++L  L +   + 
Sbjct: 396 KGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMM-KKGLTPNVYTWNSLLDALVKAEEIN 454

Query: 369 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI 428
           EA   F  M  +    ++ TY+I+I+GLC   + ++A  FW D+     + +   Y  MI
Sbjct: 455 EALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMI 514

Query: 429 KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQ 477
            GL + G I +A         +G  P+   +N +I+G    +   EAYQ
Sbjct: 515 SGLAKVGNITDAYSLFERFKANGGIPDAASFNALIEGMSNANRAMEAYQ 563



 Score =  187 bits (476), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 133/555 (23%), Positives = 244/555 (43%), Gaps = 78/555 (14%)

Query: 13  AHKLFFDMKSRGHVPNVVSYT-----------------------------------TLIH 37
           A K F ++K++G  P+ VSYT                                   T+I 
Sbjct: 2   AWKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIM 61

Query: 38  GYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEE 97
           GY   G  + AYK+ + +R  G +P+ ++++ ++  + + R V+ A      L+E MK  
Sbjct: 62  GYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEA----LSLFEVMK-- 115

Query: 98  EDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHG 157
           +D   N++ +  ++D LC  G V E +RI ++M              M+D LC++ +   
Sbjct: 116 KDAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEE 175

Query: 158 ASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVE 217
           A ++     +RG  P  V+Y S++ GL K G    AY+L E+ +  G+  +   Y  L+ 
Sbjct: 176 AYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIR 235

Query: 218 GL-----------------------------------CGESDLEKARKVLQFMLSKKDVD 242
                                                    ++EK R + + + S   + 
Sbjct: 236 NFFIHGRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLP 295

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
             R  +I +  L       E  N+   M Q     D    N V++GFCK G++ +A ++L
Sbjct: 296 DVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEIL 355

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
            +M   K   P   T+  I+ GL  + R+ EA  +L++    +G    +V Y++++ G  
Sbjct: 356 EEM-KEKCVQPTVATYGAIVDGLAKIDRLDEAY-MLFEEAKSKGIELNVVLYSSLIDGFG 413

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
           ++ R++EA  +   M+  G+  +  T+  ++D L ++ +++EA   +  +       + Y
Sbjct: 414 KVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTY 473

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
            Y+ +I GLCR  K ++A  F  ++   G+ PN+V Y  +I G  K+    +AY +    
Sbjct: 474 TYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERF 533

Query: 483 RKNGLNPDAVTWRIL 497
           + NG  PDA ++  L
Sbjct: 534 KANGGIPDAASFNAL 548



 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 109/421 (25%), Positives = 201/421 (47%), Gaps = 6/421 (1%)

Query: 86  LMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHM 145
           + +K +  +K +  L  ++ ++ +++  LC+ G + E   +   M   +SV   +A   M
Sbjct: 1   MAWKFFHELKAQ-GLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTM 59

Query: 146 IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY 205
           I     +GR   A +++  +R+RG  PS+VS+NSI+  L K      A  L E  ++   
Sbjct: 60  IMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEV-MKKDA 118

Query: 206 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 265
            P+  TY ++++ LC    +E+A ++L  M            NI +  LC  +   E   
Sbjct: 119 EPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYK 178

Query: 266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV-AGKFCAPDAVTFTTIIFG 324
           +     Q  C PD +T  ++I+G  K G+++EA ++   M+ AG    P  V +T++I  
Sbjct: 179 IFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANP--VVYTSLIRN 236

Query: 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 384
               GR ++   +  +++ +RG  P +   N  +  +F+   VE+ + +F  +   G + 
Sbjct: 237 FFIHGRKEDGHKIFKELI-RRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLP 295

Query: 385 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFL 444
           D  +Y+I+I GL ++ Q  E    +  +       D   Y A++ G C+SGK+H+A   L
Sbjct: 296 DVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEIL 355

Query: 445 YELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNR 504
            E+ +  V P +  Y  ++DG  K+    EAY +  E +  G+  + V +  L    G  
Sbjct: 356 EEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKV 415

Query: 505 G 505
           G
Sbjct: 416 G 416



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 108/408 (26%), Positives = 202/408 (49%), Gaps = 13/408 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D+LC   ++ EA+K+F     RG  P+ V+Y +LI G  + G++D AY++F++M   G 
Sbjct: 164 VDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGH 223

Query: 61  LPNSLTYSVLVRGVL---RTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCRE 117
             N + Y+ L+R      R  D  +    +FK   R   + DL++ N      +D + + 
Sbjct: 224 NANPVVYTSLIRNFFIHGRKEDGHK----IFKELIRRGCKPDLTLLN----TYMDCVFKA 275

Query: 118 GYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
           G V +   I ED+     + +  +   +I  L ++G+    S + + M+++G      +Y
Sbjct: 276 GEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAY 335

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
           N++V G CK G   +AY++LEE  +    P+  TY  +V+GL     L++A  + +   S
Sbjct: 336 NAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKS 395

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
           K       + +  +     +    E   +L  M++    P+V T N++++   K   I E
Sbjct: 396 KGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINE 455

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           AL     M   K C P+  T++ +I GL  V +  +A  + +Q M ++G  P +VTY  +
Sbjct: 456 ALVCFQSMKEMK-CPPNTYTYSILINGLCRVQKYNKAF-VFWQDMQKQGLVPNVVTYTTM 513

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA 405
           + GL ++  + +A  +F      G + D+ ++  +I+G+  +N+  EA
Sbjct: 514 ISGLAKVGNITDAYSLFERFKANGGIPDAASFNALIEGMSNANRAMEA 561


>gi|357160857|ref|XP_003578899.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Brachypodium distachyon]
          Length = 714

 Score =  198 bits (504), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 141/502 (28%), Positives = 240/502 (47%), Gaps = 20/502 (3%)

Query: 8   SRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEM--RHCGVLPNSL 65
           +R  +   ++ DM   G  P++ +Y TL+  +C+ G MD A  +  +M  R  G LPN +
Sbjct: 208 ARWDDMRAVYSDMLQLGVEPSIFTYNTLLDSFCKAGRMDQAVALLKDMEARAAGCLPNDV 267

Query: 66  TYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFA--NLVDSLCREGYVNEV 123
           TY+V++ G+ R  ++E+A     +L + M+    LS   +AF    L+  L    +V + 
Sbjct: 268 TYNVVINGLARKGELEKAA----QLVDIMR----LSKKASAFTYNPLITGLLARDFVEKA 319

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             +  +M     V        +ID L ++G    A      MR +GL P L++YNS+++G
Sbjct: 320 GALLLEMENEGIVPTVVTYNTLIDGLFKTGNAEAAQVKFDEMRAKGLLPDLITYNSLING 379

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK G   +A  L  +  + G  P+  TY +L++G C   DLE AR++ + M  +  +  
Sbjct: 380 YCKAGNLKQALCLFGDLKRAGLGPTVLTYNILIDGYCRLGDLEGARRLKEEMTEEDCLPD 439

Query: 244 TRICNIYLRALCLIKNPTELLNVLVF---MLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                I +   C+++N   L  V +F   ML    +PD    NT I+    +G I  A +
Sbjct: 440 VCTYTILMNGSCMVRN---LAMVRIFFDEMLSKGLEPDCFAYNTRISAELTIGAITNAFQ 496

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +  +M+  +  + D VT+  +I GL   G +++A  +L+  M   G     VTY  ++  
Sbjct: 497 LREEMML-RGISSDTVTYNVLIDGLCKTGSLKDAY-VLWMKMVTDGLRLDCVTYTCLIHA 554

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
                R+ EAK +F+ M+  G+     TY I I   C    L  A  ++  ++      +
Sbjct: 555 HCERGRLIEAKNIFDGMVASGLSPSVVTYTIFIHTYCRRGNLYLAYGWFRKMLEEGVEPN 614

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              Y  ++  LCR G+   A    +E+++ G+ PN   Y ++IDG+CK      A ++  
Sbjct: 615 EVTYNVLMHALCRMGRTESAYQHFHEMLERGLVPNKYTYTLLIDGSCKEGNWVHAIRLYC 674

Query: 481 EMRKNGLNPDAVTWRILDKLHG 502
           EM + G++PD  T   L K  G
Sbjct: 675 EMHQKGIHPDHCTHNALFKGFG 696



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 122/440 (27%), Positives = 200/440 (45%), Gaps = 45/440 (10%)

Query: 10  VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSV 69
           V +A  L  +M++ G VP VV+Y TLI G  +TG  + A   FDEMR  G+LP+ +TY+ 
Sbjct: 316 VEKAGALLLEMENEGIVPTVVTYNTLIDGLFKTGNAEAAQVKFDEMRAKGLLPDLITYNS 375

Query: 70  LVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAED 129
           L+ G  +  ++++A  L   L     +   L      +  L+D  CR G +    R+ E+
Sbjct: 376 LINGYCKAGNLKQALCLFGDL-----KRAGLGPTVLTYNILIDGYCRLGDLEGARRLKEE 430

Query: 130 MPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVY-VMRKRGLTPSLVSYNSIVHGLCKHG 188
           M +   + +      +++  C   RN    R+ +  M  +GL P   +YN+ +      G
Sbjct: 431 MTEEDCLPDVCTYTILMNGSCMV-RNLAMVRIFFDEMLSKGLEPDCFAYNTRISAELTIG 489

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
               A+QL EE +  G      TY VL++GLC    L+ A  +   M++    D  R+  
Sbjct: 490 AITNAFQLREEMMLRGISSDTVTYNVLIDGLCKTGSLKDAYVLWMKMVT----DGLRL-- 543

Query: 249 IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 308
                                        D +T   +I+  C+ GR+ EA  + + MVA 
Sbjct: 544 -----------------------------DCVTYTCLIHAHCERGRLIEAKNIFDGMVAS 574

Query: 309 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE 368
              +P  VT+T  I      G +  A    ++ M + G  P  VTYN ++  L R+ R E
Sbjct: 575 GL-SPSVVTYTIFIHTYCRRGNLYLAYG-WFRKMLEEGVEPNEVTYNVLMHALCRMGRTE 632

Query: 369 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI 428
            A + F+ ML  G+V +  TY ++IDG C+      A R + ++       D+  + A+ 
Sbjct: 633 SAYQHFHEMLERGLVPNKYTYTLLIDGSCKEGNWVHAIRLYCEMHQKGIHPDHCTHNALF 692

Query: 429 KGLCRSGKIHEAVHFLYELV 448
           KG    G +++AV +L  +V
Sbjct: 693 KGF-GEGHMYDAVQYLENVV 711



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 111/351 (31%), Positives = 180/351 (51%), Gaps = 10/351 (2%)

Query: 160 RVVYV-MRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLE--EGIQFGYLPSEHTYKVLV 216
           R VY  M + G+ PS+ +YN+++   CK G   +A  LL+  E    G LP++ TY V++
Sbjct: 214 RAVYSDMLQLGVEPSIFTYNTLLDSFCKAGRMDQAVALLKDMEARAAGCLPNDVTYNVVI 273

Query: 217 EGLCGESDLEKARKVLQFM-LSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQ- 274
            GL  + +LEKA +++  M LSKK    T   N  +  L L ++  E    L+  ++ + 
Sbjct: 274 NGLARKGELEKAAQLVDIMRLSKKASAFTY--NPLITGL-LARDFVEKAGALLLEMENEG 330

Query: 275 CQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEA 334
             P V+T NT+I+G  K G  E A    ++M A K   PD +T+ ++I G    G +++A
Sbjct: 331 IVPTVVTYNTLIDGLFKTGNAEAAQVKFDEMRA-KGLLPDLITYNSLINGYCKAGNLKQA 389

Query: 335 LNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVID 394
           L  L+  + + G  P ++TYN ++ G  RL  +E A+ +   M     + D  TY I+++
Sbjct: 390 L-CLFGDLKRAGLGPTVLTYNILIDGYCRLGDLEGARRLKEEMTEEDCLPDVCTYTILMN 448

Query: 395 GLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTP 454
           G C    L   + F+D+++      D + Y   I      G I  A     E++  G++ 
Sbjct: 449 GSCMVRNLAMVRIFFDEMLSKGLEPDCFAYNTRISAELTIGAITNAFQLREEMMLRGISS 508

Query: 455 NIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
           + V YNV+IDG CK    ++AY +  +M  +GL  D VT+  L   H  RG
Sbjct: 509 DTVTYNVLIDGLCKTGSLKDAYVLWMKMVTDGLRLDCVTYTCLIHAHCERG 559



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 115/481 (23%), Positives = 209/481 (43%), Gaps = 41/481 (8%)

Query: 17  FFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLR 76
           F +M   G  P V     ++         D    V+ +M   GV P+  TY+ L+    +
Sbjct: 182 FQEMARHGVAPFVKECNCVLRVLRDAARWDDMRAVYSDMLQLGVEPSIFTYNTLLDSFCK 241

Query: 77  TRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSV 136
              +++A  L+  +  R         N+  +  +++ L R+G + +  ++ + M   K  
Sbjct: 242 AGRMDQAVALLKDMEAR---AAGCLPNDVTYNVVINGLARKGELEKAAQLVDIMRLSKKA 298

Query: 137 NEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQL 196
           +  F    +I  L        A  ++  M   G+ P++V+YN+++ GL K G    A   
Sbjct: 299 SA-FTYNPLITGLLARDFVEKAGALLLEMENEGIVPTVVTYNTLIDGLFKTGNAEAAQVK 357

Query: 197 LEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCL 256
            +E    G LP   TY  L+ G C   +L++A                         LCL
Sbjct: 358 FDEMRAKGLLPDLITYNSLINGYCKAGNLKQA-------------------------LCL 392

Query: 257 IKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAV 316
             +          + +    P V+T N +I+G+C++G +E A ++  +M   + C PD  
Sbjct: 393 FGD----------LKRAGLGPTVLTYNILIDGYCRLGDLEGARRLKEEMTE-EDCLPDVC 441

Query: 317 TFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNC 376
           T+T ++ G   V R    + + +  M  +G  P    YN  +     +  +  A ++   
Sbjct: 442 TYTILMNGSCMV-RNLAMVRIFFDEMLSKGLEPDCFAYNTRISAELTIGAITNAFQLREE 500

Query: 377 MLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGK 436
           M+  G+ +D+ TY ++IDGLC++  L +A   W  +V      D   Y  +I   C  G+
Sbjct: 501 MMLRGISSDTVTYNVLIDGLCKTGSLKDAYVLWMKMVTDGLRLDCVTYTCLIHAHCERGR 560

Query: 437 IHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRI 496
           + EA +    +V SG++P++V Y + I   C+      AY   R+M + G+ P+ VT+ +
Sbjct: 561 LIEAKNIFDGMVASGLSPSVVTYTIFIHTYCRRGNLYLAYGWFRKMLEEGVEPNEVTYNV 620

Query: 497 L 497
           L
Sbjct: 621 L 621



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 105/378 (27%), Positives = 181/378 (47%), Gaps = 12/378 (3%)

Query: 6   GLSRVG--EAHKLFFD-MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           GL + G  EA ++ FD M+++G +P++++Y +LI+GYC+ G +  A  +F +++  G+ P
Sbjct: 344 GLFKTGNAEAAQVKFDEMRAKGLLPDLITYNSLINGYCKAGNLKQALCLFGDLKRAGLGP 403

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
             LTY++L+ G  R  D+E A     +L E M EE+ L  +   +  L++  C    +  
Sbjct: 404 TVLTYNILIDGYCRLGDLEGAR----RLKEEMTEEDCLP-DVCTYTILMNGSCMVRNLAM 458

Query: 123 VFRIAEDMPQGKSVNEE-FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
           V RI  D    K +  + FA    I +    G    A ++   M  RG++   V+YN ++
Sbjct: 459 V-RIFFDEMLSKGLEPDCFAYNTRISAELTIGAITNAFQLREEMMLRGISSDTVTYNVLI 517

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
            GLCK G    AY L  + +  G      TY  L+   C    L +A+ +   M++    
Sbjct: 518 DGLCKTGSLKDAYVLWMKMVTDGLRLDCVTYTCLIHAHCERGRLIEAKNIFDGMVASGLS 577

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
                  I++   C   N          ML+   +P+ +T N +++  C+MGR E A + 
Sbjct: 578 PSVVTYTIFIHTYCRRGNLYLAYGWFRKMLEEGVEPNEVTYNVLMHALCRMGRTESAYQH 637

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
            ++M+  +   P+  T+T +I G    G    A+  LY  M Q+G  P   T+NA+ +G 
Sbjct: 638 FHEMLE-RGLVPNKYTYTLLIDGSCKEGNWVHAIR-LYCEMHQKGIHPDHCTHNALFKGF 695

Query: 362 FRLRRVEEAKEVFNCMLG 379
                 +  + + N +LG
Sbjct: 696 GEGHMYDAVQYLENVVLG 713



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 87/340 (25%), Positives = 150/340 (44%), Gaps = 43/340 (12%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C    + +A  LF D+K  G  P V++Y  LI GYCR G+++ A ++ +EM     LP+ 
Sbjct: 381 CKAGNLKQALCLFGDLKRAGLGPTVLTYNILIDGYCRLGDLEGARRLKEEMTEEDCLPDV 440

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWER---------------------------MKEE 97
            TY++L+ G    R++    +   ++  +                           ++EE
Sbjct: 441 CTYTILMNGSCMVRNLAMVRIFFDEMLSKGLEPDCFAYNTRISAELTIGAITNAFQLREE 500

Query: 98  ---EDLSVNNAAFANLVDSLCREGYVNEVFRIAEDM-PQGKSVN-EEFACGHMIDSLCRS 152
                +S +   +  L+D LC+ G + + + +   M   G  ++   + C  +I + C  
Sbjct: 501 MMLRGISSDTVTYNVLIDGLCKTGSLKDAYVLWMKMVTDGLRLDCVTYTC--LIHAHCER 558

Query: 153 GRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAY----QLLEEGIQFGYLPS 208
           GR   A  +   M   GL+PS+V+Y   +H  C+ G    AY    ++LEEG++    P+
Sbjct: 559 GRLIEAKNIFDGMVASGLSPSVVTYTIFIHTYCRRGNLYLAYGWFRKMLEEGVE----PN 614

Query: 209 EHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLV 268
           E TY VL+  LC     E A +    ML +  V       + +   C   N    + +  
Sbjct: 615 EVTYNVLMHALCRMGRTESAYQHFHEMLERGLVPNKYTYTLLIDGSCKEGNWVHAIRLYC 674

Query: 269 FMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 308
            M Q    PD  T N +  GF + G + +A++ L ++V G
Sbjct: 675 EMHQKGIHPDHCTHNALFKGFGE-GHMYDAVQYLENVVLG 713


>gi|224054827|ref|XP_002298371.1| predicted protein [Populus trichocarpa]
 gi|222845629|gb|EEE83176.1| predicted protein [Populus trichocarpa]
          Length = 915

 Score =  198 bits (504), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 134/537 (24%), Positives = 262/537 (48%), Gaps = 45/537 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   +  EA  LF +M  +G   N V+Y+ LI  +CR G++D A     +M   G+
Sbjct: 373 INSLCKDGKFDEAELLFKEMGEKGLCANDVTYSILIDSFCRRGKLDTAIHFLGKMIMAGI 432

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
                 Y+ L+ G  +  ++  A       ++ M ++  L     ++ +L+   C +G +
Sbjct: 433 KITVYPYNSLINGHCKLGNLSAA----VSFFDEMIDK-GLKPTVVSYTSLISGYCNKGKL 487

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E FR+  +M         +    +I +L R+ R   A R+   M ++ + P+ V+YN +
Sbjct: 488 HEAFRLYHEMTGKGIAPNTYTFTTLISALFRANRMTDAFRLFDEMLEQNMMPNEVTYNVM 547

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVL------QF 234
           + G CK G  ++A++LL + +Q G +P  +TY+ L+  LC    + +A+K +       F
Sbjct: 548 IEGHCKEGNTVKAFELLNQMVQKGLVPDTYTYRPLISSLCSTGRVCEAKKFIDDLHREHF 607

Query: 235 MLS----------------------------KKDVDRTRIC-NIYLRALCLIKNPTELLN 265
            L+                            K+ VD   +C  + +      ++ + +  
Sbjct: 608 KLNEMCYSALLHGYCKEGRLRDALGVCREMVKRGVDMDLVCYAVLIDGTIKEQDTSAVFG 667

Query: 266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 325
           +L  M   + +PD +   ++I+G+ K G +++A  +  D++  + C P+ VT+TT+I  L
Sbjct: 668 LLKNMHDQRLRPDKVIYTSMIDGYSKAGSVKKAFGIW-DIMIDEGCTPNIVTYTTLINEL 726

Query: 326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 385
              G + +A  LL++ M     +P  VTY   L  L R   +E+A ++ N ML  G++A+
Sbjct: 727 CKAGLMDKA-ELLWKEMLVSNSTPNHVTYCCFLDHLAREGSMEKAVQLHNDMLK-GLLAN 784

Query: 386 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY 445
           + +Y I++ G C+  +++EA +  D+++  +   D   Y+ +I   CR G +  A+ F  
Sbjct: 785 TVSYNILVRGFCKLGRVEEATKLLDEMIDNAIFPDCITYSTIIYQCCRRGNLDGAIEFWD 844

Query: 446 ELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
            +++ G+ P+ + YN +I G C      +A+++  +M + G+ P+  T + L   HG
Sbjct: 845 TMLNKGLKPDTLAYNFLIYGCCIAGELGKAFELRDDMIRRGVKPNQATHKSLS--HG 899



 Score =  194 bits (494), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 133/494 (26%), Positives = 239/494 (48%), Gaps = 9/494 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ L  + RV     LF ++ S G  P++  Y  +I  +C       A ++   M    +
Sbjct: 200 LNGLAKIRRVDMVLVLFGEILSMGIRPDIYIYVAVIRSFCELKNFAKAKEMIQRMESSDL 259

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             N + Y+VL+ G+ + + V  A  +   L ++      L+ +   +  LV  LC+    
Sbjct: 260 --NVVVYNVLIHGLCKNKRVWEAVEIKNGLIQK-----GLTASEVTYCTLVLGLCKVQEF 312

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                + ++M +   V  E A   +++ L R G+   A  +V  ++K G  PSL  YN++
Sbjct: 313 EVGAGVMDEMIELGFVPTEAALSSLVEGLRRKGKVVDAFDLVNRVKKVGAMPSLFVYNAL 372

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++ LCK G    A  L +E  + G   ++ TY +L++  C    L+ A   L  M+    
Sbjct: 373 INSLCKDGKFDEAELLFKEMGEKGLCANDVTYSILIDSFCRRGKLDTAIHFLGKMIMAGI 432

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                  N  +   C + N +  ++    M+    +P V++  ++I+G+C  G++ EA +
Sbjct: 433 KITVYPYNSLINGHCKLGNLSAAVSFFDEMIDKGLKPTVVSYTSLISGYCNKGKLHEAFR 492

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           + ++M  GK  AP+  TFTT+I  L    R+ +A  L  +++ Q    P  VTYN ++ G
Sbjct: 493 LYHEM-TGKGIAPNTYTFTTLISALFRANRMTDAFRLFDEMLEQ-NMMPNEVTYNVMIEG 550

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
             +     +A E+ N M+  G+V D+ TY  +I  LC + ++ EAK+F DD+       +
Sbjct: 551 HCKEGNTVKAFELLNQMVQKGLVPDTYTYRPLISSLCSTGRVCEAKKFIDDLHREHFKLN 610

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              Y+A++ G C+ G++ +A+    E+V  GV  ++VCY V+IDG  K       + +L+
Sbjct: 611 EMCYSALLHGYCKEGRLRDALGVCREMVKRGVDMDLVCYAVLIDGTIKEQDTSAVFGLLK 670

Query: 481 EMRKNGLNPDAVTW 494
            M    L PD V +
Sbjct: 671 NMHDQRLRPDKVIY 684



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 126/468 (26%), Positives = 227/468 (48%), Gaps = 16/468 (3%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C L  +  A   F +M  +G  P VVSYT+LI GYC  G++  A++++ EM   G+ PN+
Sbjct: 447 CKLGNLSAAVSFFDEMIDKGLKPTVVSYTSLISGYCNKGKLHEAFRLYHEMTGKGIAPNT 506

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
            T++ L+  + R   +  A    F+L++ M E+ ++  N   +  +++  C+EG   + F
Sbjct: 507 YTFTTLISALFRANRMTDA----FRLFDEMLEQ-NMMPNEVTYNVMIEGHCKEGNTVKAF 561

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
            +   M Q   V + +    +I SLC +GR   A + +  + +     + + Y++++HG 
Sbjct: 562 ELLNQMVQKGLVPDTYTYRPLISSLCSTGRVCEAKKFIDDLHREHFKLNEMCYSALLHGY 621

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM----LSKKD 240
           CK G    A  +  E ++ G       Y VL++G   E D      +L+ M    L    
Sbjct: 622 CKEGRLRDALGVCREMVKRGVDMDLVCYAVLIDGTIKEQDTSAVFGLLKNMHDQRLRPDK 681

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           V  T + + Y +A  + K       +   M+   C P+++T  T+IN  CK G +++A  
Sbjct: 682 VIYTSMIDGYSKAGSVKKA----FGIWDIMIDEGCTPNIVTYTTLINELCKAGLMDKAEL 737

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +  +M+      P+ VT+   +  L   G +++A+ L   ++  +G     V+YN ++RG
Sbjct: 738 LWKEMLVSN-STPNHVTYCCFLDHLAREGSMEKAVQLHNDML--KGLLANTVSYNILVRG 794

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
             +L RVEEA ++ + M+   +  D  TY+ +I   C    LD A  FWD ++      D
Sbjct: 795 FCKLGRVEEATKLLDEMIDNAIFPDCITYSTIIYQCCRRGNLDGAIEFWDTMLNKGLKPD 854

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACK 468
              Y  +I G C +G++ +A     +++  GV PN   +  +  GA +
Sbjct: 855 TLAYNFLIYGCCIAGELGKAFELRDDMIRRGVKPNQATHKSLSHGASR 902



 Score =  191 bits (485), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 144/498 (28%), Positives = 230/498 (46%), Gaps = 21/498 (4%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   RV EA ++   +  +G   + V+Y TL+ G C+  E +V   V DEM   G +P 
Sbjct: 271 LCKNKRVWEAVEIKNGLIQKGLTASEVTYCTLVLGLCKVQEFEVGAGVMDEMIELGFVPT 330

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKE---EEDLSVNNAAFANLVDSLCREGYV 120
               S LV G+ R   V  A    F L  R+K+      L V NA    L++SLC++G  
Sbjct: 331 EAALSSLVEGLRRKGKVVDA----FDLVNRVKKVGAMPSLFVYNA----LINSLCKDGKF 382

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E   + ++M +      +     +IDS CR G+   A   +  M   G+  ++  YNS+
Sbjct: 383 DEAELLFKEMGEKGLCANDVTYSILIDSFCRRGKLDTAIHFLGKMIMAGIKITVYPYNSL 442

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++G CK G    A    +E I  G  P+  +Y  L+ G C +  L +A ++   M  K  
Sbjct: 443 INGHCKLGNLSAAVSFFDEMIDKGLKPTVVSYTSLISGYCNKGKLHEAFRLYHEMTGKGI 502

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
              T      + AL      T+   +   ML+    P+ +T N +I G CK G   +A +
Sbjct: 503 APNTYTFTTLISALFRANRMTDAFRLFDEMLEQNMMPNEVTYNVMIEGHCKEGNTVKAFE 562

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +LN MV  K   PD  T+  +I  L + GR+ EA   +   + +  +    + Y+A+L G
Sbjct: 563 LLNQMVQ-KGLVPDTYTYRPLISSLCSTGRVCEAKKFIDD-LHREHFKLNEMCYSALLHG 620

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA----KRFWDDIVWPS 416
             +  R+ +A  V   M+  GV  D   YA++IDG  +           K   D  + P 
Sbjct: 621 YCKEGRLRDALGVCREMVKRGVDMDLVCYAVLIDGTIKEQDTSAVFGLLKNMHDQRLRP- 679

Query: 417 NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAY 476
              D  +Y +MI G  ++G + +A      ++D G TPNIV Y  +I+  CK  +  +A 
Sbjct: 680 ---DKVIYTSMIDGYSKAGSVKKAFGIWDIMIDEGCTPNIVTYTTLINELCKAGLMDKAE 736

Query: 477 QILREMRKNGLNPDAVTW 494
            + +EM  +   P+ VT+
Sbjct: 737 LLWKEMLVSNSTPNHVTY 754



 Score =  181 bits (459), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 123/489 (25%), Positives = 232/489 (47%), Gaps = 9/489 (1%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           R+ ++  +F  M+    +P V +   +++G  +   +D+   +F E+   G+ P+   Y 
Sbjct: 173 RMFDSVLIFRLMRQCELMPQVRTLGEVLNGLAKIRRVDMVLVLFGEILSMGIRPDIYIYV 232

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
            ++R     ++  +A     ++ +RM E  DL+V    +  L+  LC+   V E   I  
Sbjct: 233 AVIRSFCELKNFAKAK----EMIQRM-ESSDLNV--VVYNVLIHGLCKNKRVWEAVEIKN 285

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
            + Q      E     ++  LC+       + V+  M + G  P+  + +S+V GL + G
Sbjct: 286 GLIQKGLTASEVTYCTLVLGLCKVQEFEVGAGVMDEMIELGFVPTEAALSSLVEGLRRKG 345

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
             + A+ L+    + G +PS   Y  L+  LC +   ++A  + + M  K         +
Sbjct: 346 KVVDAFDLVNRVKKVGAMPSLFVYNALINSLCKDGKFDEAELLFKEMGEKGLCANDVTYS 405

Query: 249 IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 308
           I + + C        ++ L  M+    +  V   N++ING CK+G +  A+   ++M+  
Sbjct: 406 ILIDSFCRRGKLDTAIHFLGKMIMAGIKITVYPYNSLINGHCKLGNLSAAVSFFDEMI-D 464

Query: 309 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE 368
           K   P  V++T++I G  N G++ EA  L Y  M  +G +P   T+  ++  LFR  R+ 
Sbjct: 465 KGLKPTVVSYTSLISGYCNKGKLHEAFRL-YHEMTGKGIAPNTYTFTTLISALFRANRMT 523

Query: 369 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI 428
           +A  +F+ ML   ++ +  TY ++I+G C+     +A    + +V    + D Y Y  +I
Sbjct: 524 DAFRLFDEMLEQNMMPNEVTYNVMIEGHCKEGNTVKAFELLNQMVQKGLVPDTYTYRPLI 583

Query: 429 KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLN 488
             LC +G++ EA  F+ +L       N +CY+ ++ G CK    R+A  + REM K G++
Sbjct: 584 SSLCSTGRVCEAKKFIDDLHREHFKLNEMCYSALLHGYCKEGRLRDALGVCREMVKRGVD 643

Query: 489 PDAVTWRIL 497
            D V + +L
Sbjct: 644 MDLVCYAVL 652



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 93/397 (23%), Positives = 178/397 (44%), Gaps = 39/397 (9%)

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
           +I S  +  R   +  +  +MR+  L P + +   +++GL K         L  E +  G
Sbjct: 164 LIQSYVQEKRMFDSVLIFRLMRQCELMPQVRTLGEVLNGLAKIRRVDMVLVLFGEILSMG 223

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL 264
             P  + Y  ++   C   +  KA++++Q M S  D++   + N+ +  LC  K   E +
Sbjct: 224 IRPDIYIYVAVIRSFCELKNFAKAKEMIQRMESS-DLNVV-VYNVLIHGLCKNKRVWEAV 281

Query: 265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 324
            +   ++Q       +T  T++ G CK+   E    V+++M+   F  P     ++++ G
Sbjct: 282 EIKNGLIQKGLTASEVTYCTLVLGLCKVQEFEVGAGVMDEMIELGF-VPTEAALSSLVEG 340

Query: 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 384
           L   G++ +A +L+ +V  + G  P +  YNA++  L +  + +EA+ +F  M   G+ A
Sbjct: 341 LRRKGKVVDAFDLVNRV-KKVGAMPSLFVYNALINSLCKDGKFDEAELLFKEMGEKGLCA 399

Query: 385 DSTTYAIVIDGLCESNQLDEAKRFWDDI--------VWPSN-----------------IH 419
           +  TY+I+ID  C   +LD A  F   +        V+P N                   
Sbjct: 400 NDVTYSILIDSFCRRGKLDTAIHFLGKMIMAGIKITVYPYNSLINGHCKLGNLSAAVSFF 459

Query: 420 DNYV----------YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKL 469
           D  +          Y ++I G C  GK+HEA    +E+   G+ PN   +  +I    + 
Sbjct: 460 DEMIDKGLKPTVVSYTSLISGYCNKGKLHEAFRLYHEMTGKGIAPNTYTFTTLISALFRA 519

Query: 470 SMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           +   +A+++  EM +  + P+ VT+ ++ + H   GN
Sbjct: 520 NRMTDAFRLFDEMLEQNMMPNEVTYNVMIEGHCKEGN 556



 Score = 44.7 bits (104), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 42/84 (50%)

Query: 3   QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           Q C    +  A + +  M ++G  P+ ++Y  LI+G C  GE+  A+++ D+M   GV P
Sbjct: 829 QCCRRGNLDGAIEFWDTMLNKGLKPDTLAYNFLIYGCCIAGELGKAFELRDDMIRRGVKP 888

Query: 63  NSLTYSVLVRGVLRTRDVERANVL 86
           N  T+  L  G  R   +    V+
Sbjct: 889 NQATHKSLSHGASRKFSISTHPVM 912


>gi|413937324|gb|AFW71875.1| hypothetical protein ZEAMMB73_225396 [Zea mays]
          Length = 818

 Score =  198 bits (504), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 133/506 (26%), Positives = 239/506 (47%), Gaps = 27/506 (5%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C  S   +A  L  +M+++G  P++V+Y  LI+  C  G++D A  +   +   G 
Sbjct: 293 LDATCKESGYRQAMALLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSNLPSHGC 352

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDL----SVNNAA-----FANLV 111
            P+++TY+ +++ +  +              ER KE E+L    + NN A     F  +V
Sbjct: 353 KPDAVTYTPVLKSLCGS--------------ERWKEVEELLAEMTSNNCAPDEVTFNTIV 398

Query: 112 DSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLT 171
            SLC++G V+    + + M +   V +      ++D LC  GR   A  ++  ++  G  
Sbjct: 399 TSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCK 458

Query: 172 PSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKV 231
           P  ++Y +++ GLC      RA +L+ E +     P E T+  +V  LC +  +++A +V
Sbjct: 459 PDTIAYTTVLKGLCSTEQWERAEELMAEMLCSDCPPDEVTFNTVVASLCQKGLVDRAIRV 518

Query: 232 LQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK 291
           ++ M            N  +  LC      + + +L  +    C+PD++T NT++ G C 
Sbjct: 519 VEQMSENGCSPDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGCKPDIVTFNTLLKGLCG 578

Query: 292 MGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGI 351
           + R E+A +++ +M+    C PD +TF T+I  L   G + +A+  L ++M + G  P  
Sbjct: 579 VDRWEDAEQLMANMMRSN-CPPDELTFNTVITSLCQKGLLTQAIETL-KIMAENGCVPNS 636

Query: 352 VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDD 411
            TY+ V+  L +  + + A E+ + M       D  TY  VI  L ++ +++EA      
Sbjct: 637 STYSIVVDALLKAGKAQAALELLSGM--TNGTPDLITYNTVISNLTKAGKMEEALDLLRV 694

Query: 412 IVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSM 471
           +V      D   Y ++  G+CR      AV  L  + D+G++P+   YN V+ G C+   
Sbjct: 695 MVSNGLCPDTTTYRSLAYGVCREDGTDRAVRMLRRVQDTGLSPDTTFYNDVLLGFCRDRR 754

Query: 472 KREAYQILREMRKNGLNPDAVTWRIL 497
              A      M  +G  PD  T+ IL
Sbjct: 755 TDLAIDCFAHMVSSGCMPDESTYVIL 780



 Score =  184 bits (468), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 133/524 (25%), Positives = 240/524 (45%), Gaps = 79/524 (15%)

Query: 3   QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYK------------ 50
           +LC   RV +A ++F  +   G    VV+Y T+++GYCR G ++ A +            
Sbjct: 196 RLCSDGRVSDAERVFAAL---GPSATVVTYNTMVNGYCRAGRIEDARRLINGMPFPPDTF 252

Query: 51  --------------------VFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKL 90
                               VFD+M H G  P+ +TYS+L+    +     +A  L+ ++
Sbjct: 253 TFNPLIRALCVRGRIPDALAVFDDMLHRGCSPSVVTYSILLDATCKESGYRQAMALLDEM 312

Query: 91  WERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC 150
             +  E + ++ N      L++++C EG V+E   I  ++P      +      ++ SLC
Sbjct: 313 RAKGCEPDIVTYNV-----LINAMCNEGDVDEALNILSNLPSHGCKPDAVTYTPVLKSLC 367

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
            S R      ++  M      P  V++N+IV  LC+ G   RA ++++   + G +    
Sbjct: 368 GSERWKEVEELLAEMTSNNCAPDEVTFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIV 427

Query: 211 TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM 270
           TY  +++GLC                   DV R             + +  ELL+ L   
Sbjct: 428 TYSSILDGLC-------------------DVGR-------------VDDAVELLSRLK-- 453

Query: 271 LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR 330
               C+PD I   TV+ G C   + E A +++ +M+    C PD VTF T++  L   G 
Sbjct: 454 -SYGCKPDTIAYTTVLKGLCSTEQWERAEELMAEMLCSD-CPPDEVTFNTVVASLCQKGL 511

Query: 331 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYA 390
           +  A+ ++ Q M + G SP IVTYN ++ GL     +++A E+ + +   G   D  T+ 
Sbjct: 512 VDRAIRVVEQ-MSENGCSPDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGCKPDIVTFN 570

Query: 391 IVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 450
            ++ GLC  ++ ++A++   +++  +   D   +  +I  LC+ G + +A+  L  + ++
Sbjct: 571 TLLKGLCGVDRWEDAEQLMANMMRSNCPPDELTFNTVITSLCQKGLLTQAIETLKIMAEN 630

Query: 451 GVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
           G  PN   Y++V+D   K    + A ++L  M  NG  PD +T+
Sbjct: 631 GCVPNSSTYSIVVDALLKAGKAQAALELLSGM-TNG-TPDLITY 672



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 127/462 (27%), Positives = 213/462 (46%), Gaps = 56/462 (12%)

Query: 43  GEMDVAYKVFDEM-----RHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEE 97
           GE+D A  +FD M     R+C   P  +  ++L++ +     V  A        ER+   
Sbjct: 164 GEIDEALVLFDSMASGGGRNC---PPVVPCNILIKRLCSDGRVSDA--------ERVFAA 212

Query: 98  EDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHG 157
              S     +  +V+  CR G + +  R+   MP      + F    +I +LC  GR   
Sbjct: 213 LGPSATVVTYNTMVNGYCRAGRIEDARRLINGMPFPP---DTFTFNPLIRALCVRGRIPD 269

Query: 158 ASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVE 217
           A  V   M  RG +PS+V+Y+ ++   CK  G  +A  LL+E    G  P   TY VL+ 
Sbjct: 270 ALAVFDDMLHRGCSPSVVTYSILLDATCKESGYRQAMALLDEMRAKGCEPDIVTYNVLIN 329

Query: 218 GLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQP 277
            +C E D+++A                                   LN+L  +    C+P
Sbjct: 330 AMCNEGDVDEA-----------------------------------LNILSNLPSHGCKP 354

Query: 278 DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNL 337
           D +T   V+   C   R +E  ++L +M +   CAPD VTF TI+  L   G +  A+ +
Sbjct: 355 DAVTYTPVLKSLCGSERWKEVEELLAEMTSNN-CAPDEVTFNTIVTSLCQQGLVDRAIEV 413

Query: 338 LYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLC 397
           +   M + G    IVTY+++L GL  + RV++A E+ + +   G   D+  Y  V+ GLC
Sbjct: 414 VDH-MSEHGCVADIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLC 472

Query: 398 ESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIV 457
            + Q + A+    +++      D   +  ++  LC+ G +  A+  + ++ ++G +P+IV
Sbjct: 473 STEQWERAEELMAEMLCSDCPPDEVTFNTVVASLCQKGLVDRAIRVVEQMSENGCSPDIV 532

Query: 458 CYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
            YN +IDG C  S   +A ++L +++  G  PD VT+  L K
Sbjct: 533 TYNCIIDGLCNESCIDDAMELLSDLQSCGCKPDIVTFNTLLK 574



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 122/452 (26%), Positives = 206/452 (45%), Gaps = 9/452 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +  LCG  R  E  +L  +M S    P+ V++ T++   C+ G +D A +V D M   G 
Sbjct: 363 LKSLCGSERWKEVEELLAEMTSNNCAPDEVTFNTIVTSLCQQGLVDRAIEVVDHMSEHGC 422

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           + + +TYS ++ G+     V+ A  L+ +L     +      +  A+  ++  LC     
Sbjct: 423 VADIVTYSSILDGLCDVGRVDDAVELLSRL-----KSYGCKPDTIAYTTVLKGLCSTEQW 477

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                +  +M       +E     ++ SLC+ G    A RVV  M + G +P +V+YN I
Sbjct: 478 ERAEELMAEMLCSDCPPDEVTFNTVVASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCI 537

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GLC       A +LL +    G  P   T+  L++GLCG    E A +++  M+    
Sbjct: 538 IDGLCNESCIDDAMELLSDLQSCGCKPDIVTFNTLLKGLCGVDRWEDAEQLMANMMRSNC 597

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                  N  + +LC     T+ +  L  M +  C P+  T + V++   K G+ + AL+
Sbjct: 598 PPDELTFNTVITSLCQKGLLTQAIETLKIMAENGCVPNSSTYSIVVDALLKAGKAQAALE 657

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +L+ M  G    PD +T+ T+I  L   G+++EAL+LL +VM   G  P   TY ++  G
Sbjct: 658 LLSGMTNG---TPDLITYNTVISNLTKAGKMEEALDLL-RVMVSNGLCPDTTTYRSLAYG 713

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           + R    + A  +   +   G+  D+T Y  V+ G C   + D A   +  +V    + D
Sbjct: 714 VCREDGTDRAVRMLRRVQDTGLSPDTTFYNDVLLGFCRDRRTDLAIDCFAHMVSSGCMPD 773

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGV 452
              Y  +++ L   G + EA   L  L   GV
Sbjct: 774 ESTYVILLEALAYGGLLDEAKRLLASLCSLGV 805



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 103/192 (53%), Gaps = 10/192 (5%)

Query: 324 GLLNVGRIQEALNLLYQVMPQRG--YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG 381
            L+  G I EAL +L+  M   G    P +V  N +++ L    RV +A+ VF     +G
Sbjct: 159 SLVQRGEIDEAL-VLFDSMASGGGRNCPPVVPCNILIKRLCSDGRVSDAERVF---AALG 214

Query: 382 VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAV 441
             A   TY  +++G C + ++++A+R  + + +P    D + +  +I+ LC  G+I +A+
Sbjct: 215 PSATVVTYNTMVNGYCRAGRIEDARRLINGMPFPP---DTFTFNPLIRALCVRGRIPDAL 271

Query: 442 HFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLH 501
               +++  G +P++V Y++++D  CK S  R+A  +L EMR  G  PD VT+ +L    
Sbjct: 272 AVFDDMLHRGCSPSVVTYSILLDATCKESGYRQAMALLDEMRAKGCEPDIVTYNVLINAM 331

Query: 502 GNRGN-DFGLRI 512
            N G+ D  L I
Sbjct: 332 CNEGDVDEALNI 343



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 106/243 (43%), Gaps = 7/243 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LCG+ R  +A +L  +M      P+ +++ T+I   C+ G +  A +    M   G +PN
Sbjct: 576 LCGVDRWEDAEQLMANMMRSNCPPDELTFNTVITSLCQKGLLTQAIETLKIMAENGCVPN 635

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           S TYS++V  +L+    + A  L+  +        DL   N   +NL     + G + E 
Sbjct: 636 SSTYSIVVDALLKAGKAQAALELLSGM---TNGTPDLITYNTVISNLT----KAGKMEEA 688

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             +   M       +      +   +CR      A R++  ++  GL+P    YN ++ G
Sbjct: 689 LDLLRVMVSNGLCPDTTTYRSLAYGVCREDGTDRAVRMLRRVQDTGLSPDTTFYNDVLLG 748

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            C+      A       +  G +P E TY +L+E L     L++A+++L  + S   +D+
Sbjct: 749 FCRDRRTDLAIDCFAHMVSSGCMPDESTYVILLEALAYGGLLDEAKRLLASLCSLGVLDK 808

Query: 244 TRI 246
             I
Sbjct: 809 KLI 811


>gi|224092436|ref|XP_002309609.1| predicted protein [Populus trichocarpa]
 gi|222855585|gb|EEE93132.1| predicted protein [Populus trichocarpa]
          Length = 841

 Score =  198 bits (504), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 151/541 (27%), Positives = 254/541 (46%), Gaps = 59/541 (10%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           EA K+  +M S G   NVV  TTL+ GYC+ G++D A ++FD+M   G+ PN++TY+V++
Sbjct: 312 EAVKVKGEMLSCGKPMNVVVATTLMKGYCKQGDLDSALELFDKMNENGICPNNVTYAVII 371

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP 131
               +  ++++A    ++++ +MK ++   ++   F   V+SL R GY+    R  E+  
Sbjct: 372 EWCCKNGNMDKA----YEIYNQMKNKD---ISPTVFN--VNSLIR-GYLKA--RSPEE-- 417

Query: 132 QGKSVNEEFACG--------HMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             K  +E  ACG         ++  LC+ G+   A  +   M ++G+ PS+VSYN+++ G
Sbjct: 418 ASKLFDEAVACGIANVFTYNSLLSWLCKEGKMSEACSIWEKMVRKGVRPSVVSYNNMILG 477

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            C+ G    A  +  E ++ G  P+  TY VL++G   + D E A  +   M  +     
Sbjct: 478 HCQQGDMDSANGVFVEMLEKGLKPNLITYSVLMDGYFKKGDTEYAFGLYDRMRGENIAPS 537

Query: 244 TRICNIYLRALCLIKNPTE-----------------------------------LLNVLV 268
              CNI +  LC     +E                                    L V  
Sbjct: 538 DFTCNIIINGLCKAGRTSESQDRLKKLVQEGFIPTCMTYNCIIDGFVKEGSVNSALAVYT 597

Query: 269 FMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNV 328
            M +    P+V T   +INGFCK   ++ ALKV+++M   K    D   +  +I G    
Sbjct: 598 EMCKIGVSPNVFTYTNLINGFCKSNNMDLALKVMDEM-KNKGIELDVTVYCALIDGFCRK 656

Query: 329 GRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTT 388
           G +  A  LL ++  + G SP  V Y++++ G  +L+ +E A  +   M+  G+  D   
Sbjct: 657 GDMVNASQLLSELQ-EVGLSPNKVVYSSMISGFRKLQNMEAALHLHKRMINEGIPCDLQI 715

Query: 389 YAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELV 448
           Y  +I GL +  +L  A   + +++    + D   Y+ +I GLC  G++  A   L ++ 
Sbjct: 716 YTTLISGLLKEGKLLFASELYAEMLAKGIMPDLITYSVLIHGLCNKGQLENAQKILEDMD 775

Query: 449 DSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGNDF 508
              +TP +  YN +I G  K    +EA+++  EM   GL PD  T+ IL       GN F
Sbjct: 776 RKCMTPTVFIYNTLITGHFKEGNLQEAFRLHNEMLDKGLVPDDTTYDILVNGKVKDGNLF 835

Query: 509 G 509
            
Sbjct: 836 S 836



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 114/488 (23%), Positives = 224/488 (45%), Gaps = 12/488 (2%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           R+ +A   F  +  +  VP +      +    +   +  A  V+++M   GV  +  T S
Sbjct: 169 RINDAVDCFNSLIEKDIVPCLTVMNIFLSELVKNNMIREARDVYNKMASKGVKGDCATIS 228

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
           V++R  +R   +E A     + W R  + + + ++  A++ +++++C++        +  
Sbjct: 229 VMIRASMREGKLEEA-----EGWFREAKNKGVELDARAYSIVIEAVCKKPDSVAALGLLR 283

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
           +M     V  E     +I    + G+   A +V   M   G   ++V   +++ G CK G
Sbjct: 284 EMRDKGWVPHEVIFTRVIGVCMKQGKMLEAVKVKGEMLSCGKPMNVVVATTLMKGYCKQG 343

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRI-C 247
               A +L ++  + G  P+  TY V++E  C   +++KA ++   M   KD+  T    
Sbjct: 344 DLDSALELFDKMNENGICPNNVTYAVIIEWCCKNGNMDKAYEIYNQM-KNKDISPTVFNV 402

Query: 248 NIYLRALCLIKNPTELLNVLVFMLQTQCQ-PDVITLNTVINGFCKMGRIEEALKVLNDMV 306
           N  +R     ++P E     +F     C   +V T N++++  CK G++ EA  +   MV
Sbjct: 403 NSLIRGYLKARSPEEASK--LFDEAVACGIANVFTYNSLLSWLCKEGKMSEACSIWEKMV 460

Query: 307 AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 366
             K   P  V++  +I G    G +  A N ++  M ++G  P ++TY+ ++ G F+   
Sbjct: 461 R-KGVRPSVVSYNNMILGHCQQGDMDSA-NGVFVEMLEKGLKPNLITYSVLMDGYFKKGD 518

Query: 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAA 426
            E A  +++ M G  +     T  I+I+GLC++ +  E++     +V    I     Y  
Sbjct: 519 TEYAFGLYDRMRGENIAPSDFTCNIIINGLCKAGRTSESQDRLKKLVQEGFIPTCMTYNC 578

Query: 427 MIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG 486
           +I G  + G ++ A+    E+   GV+PN+  Y  +I+G CK +    A +++ EM+  G
Sbjct: 579 IIDGFVKEGSVNSALAVYTEMCKIGVSPNVFTYTNLINGFCKSNNMDLALKVMDEMKNKG 638

Query: 487 LNPDAVTW 494
           +  D   +
Sbjct: 639 IELDVTVY 646



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 106/232 (45%), Gaps = 4/232 (1%)

Query: 276 QPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEAL 335
           + D    N ++N + K  RI +A+   N ++  K   P        +  L+    I+EA 
Sbjct: 151 ESDSRVFNYLLNSYVKTKRINDAVDCFNSLIE-KDIVPCLTVMNIFLSELVKNNMIREAR 209

Query: 336 NLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG 395
           ++ Y  M  +G      T + ++R   R  ++EEA+  F      GV  D+  Y+IVI+ 
Sbjct: 210 DV-YNKMASKGVKGDCATISVMIRASMREGKLEEAEGWFREAKNKGVELDARAYSIVIEA 268

Query: 396 LCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLC-RSGKIHEAVHFLYELVDSGVTP 454
           +C+      A     ++     +    ++  +I G+C + GK+ EAV    E++  G   
Sbjct: 269 VCKKPDSVAALGLLREMRDKGWVPHEVIFTRVI-GVCMKQGKMLEAVKVKGEMLSCGKPM 327

Query: 455 NIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           N+V    ++ G CK      A ++  +M +NG+ P+ VT+ ++ +     GN
Sbjct: 328 NVVVATTLMKGYCKQGDLDSALELFDKMNENGICPNNVTYAVIIEWCCKNGN 379



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 81/349 (23%), Positives = 142/349 (40%), Gaps = 33/349 (9%)

Query: 159 SRVVYVMRKRGLTPSLVSYNSIVHGLCKHG-GCMRAYQLLEE--GIQFGYLPSEHTYKVL 215
           S   +  +KRGL  S+ +   ++H L K    C +A  LL       +G +PS     V+
Sbjct: 83  SYFTWASQKRGLIKSVDALCVLLHILTKSTETCGKARNLLNRFASDDWGPVPS-----VV 137

Query: 216 VEGLCGES---DLEKARKVLQFMLS-------------------KKD-VDRTRICNIYLR 252
           V  L   S   D E   +V  ++L+                   +KD V    + NI+L 
Sbjct: 138 VARLIESSRRLDFESDSRVFNYLLNSYVKTKRINDAVDCFNSLIEKDIVPCLTVMNIFLS 197

Query: 253 ALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCA 312
            L       E  +V   M     + D  T++ +I    + G++EEA     +    K   
Sbjct: 198 ELVKNNMIREARDVYNKMASKGVKGDCATISVMIRASMREGKLEEAEGWFRE-AKNKGVE 256

Query: 313 PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKE 372
            DA  ++ +I  +        AL LL + M  +G+ P  V +  V+    +  ++ EA +
Sbjct: 257 LDARAYSIVIEAVCKKPDSVAALGLLRE-MRDKGWVPHEVIFTRVIGVCMKQGKMLEAVK 315

Query: 373 VFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLC 432
           V   ML  G   +      ++ G C+   LD A   +D +       +N  YA +I+  C
Sbjct: 316 VKGEMLSCGKPMNVVVATTLMKGYCKQGDLDSALELFDKMNENGICPNNVTYAVIIEWCC 375

Query: 433 RSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
           ++G + +A     ++ +  ++P +   N +I G  K     EA ++  E
Sbjct: 376 KNGNMDKAYEIYNQMKNKDISPTVFNVNSLIRGYLKARSPEEASKLFDE 424


>gi|449451888|ref|XP_004143692.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Cucumis sativus]
 gi|449529106|ref|XP_004171542.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Cucumis sativus]
          Length = 783

 Score =  198 bits (503), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 139/520 (26%), Positives = 239/520 (45%), Gaps = 77/520 (14%)

Query: 13  AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVR 72
           A ++  D    G VPN  S+  LI+GYC   ++  A    ++M   G +P++++Y+ ++ 
Sbjct: 197 ARQVLKDSIKLGVVPNTNSFNILIYGYCLESKVKDALDWVNKMSEFGCVPDTVSYNTILD 256

Query: 73  GVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQ 132
            +L+ R ++ A  L+  +     + + LS N   +  LV                     
Sbjct: 257 ALLKRRLLQEARDLLLDM-----KSKGLSPNKHTYNMLV--------------------- 290

Query: 133 GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMR 192
                    CG+     CR G    A++V+ +M +  L P++ +YN +V+G C  G    
Sbjct: 291 ---------CGY-----CRLGLLKEATKVIEIMTRNNLLPTVWTYNMLVNGFCNDGKIDE 336

Query: 193 AYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC-NIYL 251
           A+++ +E  +   LP   TY  L++G     D  +   +++ M  KK V    +  NI L
Sbjct: 337 AFRIRDEMEKMNVLPDVVTYNTLIDGCSQWRDSSEVYSLIEEM-DKKGVKCNAVTYNIIL 395

Query: 252 RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC 311
           + +C   N TE    L  M +    PD +T NT+I  +CK G++ +A +++++M + K  
Sbjct: 396 KWMCKKGNMTEATTTLDKMEENGLSPDCVTYNTLIGAYCKAGKMGKAFRMMDEMTS-KGL 454

Query: 312 APDAVTFTTIIFGLLNVGRIQEALNLL--------------------------------- 338
             D  T  TI+  L    ++ EA NLL                                 
Sbjct: 455 KIDTWTLNTILHCLCVEKKLDEAYNLLCSASKRGYILDEVSYGILILGYFKDEKGDRALN 514

Query: 339 -YQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLC 397
            +  M +R   P  +TYN+V+ GL + R+V++A +  N ML  G+V D TTY I+I G C
Sbjct: 515 LWDEMKERQIMPSTITYNSVIGGLCQSRKVDQAIDKLNEMLENGLVPDETTYNIIIHGFC 574

Query: 398 ESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIV 457
               +++A +F ++++      D Y    +++GLCR G + +A+     LV  G   ++V
Sbjct: 575 LEGNVEKAFQFHNEMIENLFKPDVYTCNILLRGLCREGMLEKALKLFNTLVSKGKDIDVV 634

Query: 458 CYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            YN +I   CK      AY +L EM    L PD  T++++
Sbjct: 635 TYNTIISSLCKEGKFENAYDLLTEMEAKKLGPDQYTYKVI 674



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 126/491 (25%), Positives = 229/491 (46%), Gaps = 33/491 (6%)

Query: 4   LCGLSRVG---EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +CG  R+G   EA K+   M     +P V +Y  L++G+C  G++D A+++ DEM    V
Sbjct: 290 VCGYCRLGLLKEATKVIEIMTRNNLLPTVWTYNMLVNGFCNDGKIDEAFRIRDEMEKMNV 349

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           LP+ +TY+ L+ G  + RD       ++ L E M +++ +  N   +  ++  +C++G +
Sbjct: 350 LPDVVTYNTLIDGCSQWRDSSE----VYSLIEEM-DKKGVKCNAVTYNIILKWMCKKGNM 404

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E     + M +     +      +I + C++G+   A R++  M  +GL     + N+I
Sbjct: 405 TEATTTLDKMEENGLSPDCVTYNTLIGAYCKAGKMGKAFRMMDEMTSKGLKIDTWTLNTI 464

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +H LC       AY LL    + GY+  E +Y +L+ G   +   ++A  +   M  ++ 
Sbjct: 465 LHCLCVEKKLDEAYNLLCSASKRGYILDEVSYGILILGYFKDEKGDRALNLWDEMKERQI 524

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           +  T   N  +  LC  +   + ++ L  ML+    PD  T N +I+GFC  G +E+A +
Sbjct: 525 MPSTITYNSVIGGLCQSRKVDQAIDKLNEMLENGLVPDETTYNIIIHGFCLEGNVEKAFQ 584

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
             N+M+   F  PD  T   ++ GL   G +++AL  L+  +  +G    +VTYN ++  
Sbjct: 585 FHNEMIENLF-KPDVYTCNILLRGLCREGMLEKALK-LFNTLVSKGKDIDVVTYNTIISS 642

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L +  + E A ++   M    +  D  TY ++I  L ++ ++ EA+ F   +V    +HD
Sbjct: 643 LCKEGKFENAYDLLTEMEAKKLGPDQYTYKVIIAALTDAGRIKEAEEFTLKMVESGIVHD 702

Query: 421 -----------------------NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIV 457
                                  +  Y+  I  LC   K  +A+H   E+   GV  N  
Sbjct: 703 QNLKLGKGQNVLTSEVSEHFDFKSIAYSDQINELCNQHKYKDAMHLFVEVTKEGVALNKY 762

Query: 458 CYNVVIDGACK 468
            Y  +++G  K
Sbjct: 763 TYLNLMEGLIK 773



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 122/452 (26%), Positives = 215/452 (47%), Gaps = 7/452 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D L     + EA  L  DMKS+G  PN  +Y  L+ GYCR G +  A KV + M    +
Sbjct: 255 LDALLKRRLLQEARDLLLDMKSKGLSPNKHTYNMLVCGYCRLGLLKEATKVIEIMTRNNL 314

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           LP   TY++LV G      ++ A    F++ + M E+ ++  +   +  L+D   +    
Sbjct: 315 LPTVWTYNMLVNGFCNDGKIDEA----FRIRDEM-EKMNVLPDVVTYNTLIDGCSQWRDS 369

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +EV+ + E+M +            ++  +C+ G    A+  +  M + GL+P  V+YN++
Sbjct: 370 SEVYSLIEEMDKKGVKCNAVTYNIILKWMCKKGNMTEATTTLDKMEENGLSPDCVTYNTL 429

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +   CK G   +A+++++E    G      T   ++  LC E  L++A  +L     +  
Sbjct: 430 IGAYCKAGKMGKAFRMMDEMTSKGLKIDTWTLNTILHCLCVEKKLDEAYNLLCSASKRGY 489

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           +       I +      +     LN+   M + Q  P  IT N+VI G C+  ++++A+ 
Sbjct: 490 ILDEVSYGILILGYFKDEKGDRALNLWDEMKERQIMPSTITYNSVIGGLCQSRKVDQAID 549

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
            LN+M+      PD  T+  II G    G +++A    +  M +  + P + T N +LRG
Sbjct: 550 KLNEMLENGL-VPDETTYNIIIHGFCLEGNVEKAFQ-FHNEMIENLFKPDVYTCNILLRG 607

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L R   +E+A ++FN ++  G   D  TY  +I  LC+  + + A     ++       D
Sbjct: 608 LCREGMLEKALKLFNTLVSKGKDIDVVTYNTIISSLCKEGKFENAYDLLTEMEAKKLGPD 667

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGV 452
            Y Y  +I  L  +G+I EA  F  ++V+SG+
Sbjct: 668 QYTYKVIIAALTDAGRIKEAEEFTLKMVESGI 699



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 123/495 (24%), Positives = 233/495 (47%), Gaps = 16/495 (3%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           R  E HKL          P+     T I  Y +  +  +A ++F++M+     PN LT +
Sbjct: 120 RQHELHKLILHPTRDLPEPSKELLDTSIGAYVQMDQPHLATQIFNKMKRLNYRPNLLTCN 179

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSV--NNAAFANLVDSLCREGYVNEVFRI 126
            L+  ++R      +++L+ +  + +K+   L V  N  +F  L+   C E  V +    
Sbjct: 180 TLMNSLVRYP--SSSSILLAR--QVLKDSIKLGVVPNTNSFNILIYGYCLESKVKDALDW 235

Query: 127 AEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK 186
              M +   V +  +   ++D+L +      A  ++  M+ +GL+P+  +YN +V G C+
Sbjct: 236 VNKMSEFGCVPDTVSYNTILDALLKRRLLQEARDLLLDMKSKGLSPNKHTYNMLVCGYCR 295

Query: 187 HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRI 246
            G    A +++E   +   LP+  TY +LV G C +  +++A ++   M     +     
Sbjct: 296 LGLLKEATKVIEIMTRNNLLPTVWTYNMLVNGFCNDGKIDEAFRIRDEMEKMNVLPDVVT 355

Query: 247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV 306
            N  +      ++ +E+ +++  M +   + + +T N ++   CK G + EA   L+ M 
Sbjct: 356 YNTLIDGCSQWRDSSEVYSLIEEMDKKGVKCNAVTYNIILKWMCKKGNMTEATTTLDKME 415

Query: 307 AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 366
                +PD VT+ T+I      G++ +A  ++ + M  +G      T N +L  L   ++
Sbjct: 416 ENGL-SPDCVTYNTLIGAYCKAGKMGKAFRMMDE-MTSKGLKIDTWTLNTILHCLCVEKK 473

Query: 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI----VWPSNIHDNY 422
           ++EA  +       G + D  +Y I+I G  +  + D A   WD++    + PS I    
Sbjct: 474 LDEAYNLLCSASKRGYILDEVSYGILILGYFKDEKGDRALNLWDEMKERQIMPSTI---- 529

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
            Y ++I GLC+S K+ +A+  L E++++G+ P+   YN++I G C      +A+Q   EM
Sbjct: 530 TYNSVIGGLCQSRKVDQAIDKLNEMLENGLVPDETTYNIIIHGFCLEGNVEKAFQFHNEM 589

Query: 483 RKNGLNPDAVTWRIL 497
            +N   PD  T  IL
Sbjct: 590 IENLFKPDVYTCNIL 604



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 120/234 (51%), Gaps = 5/234 (2%)

Query: 276 QPDVITLNTVINGFCKM---GRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQ 332
           +P+++T NT++N   +      I  A +VL D +      P+  +F  +I+G     +++
Sbjct: 172 RPNLLTCNTLMNSLVRYPSSSSILLARQVLKDSIKLGV-VPNTNSFNILIYGYCLESKVK 230

Query: 333 EALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIV 392
           +AL+ + + M + G  P  V+YN +L  L + R ++EA+++   M   G+  +  TY ++
Sbjct: 231 DALDWVNK-MSEFGCVPDTVSYNTILDALLKRRLLQEARDLLLDMKSKGLSPNKHTYNML 289

Query: 393 IDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGV 452
           + G C    L EA +  + +   + +   + Y  ++ G C  GKI EA     E+    V
Sbjct: 290 VCGYCRLGLLKEATKVIEIMTRNNLLPTVWTYNMLVNGFCNDGKIDEAFRIRDEMEKMNV 349

Query: 453 TPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
            P++V YN +IDG  +     E Y ++ EM K G+  +AVT+ I+ K    +GN
Sbjct: 350 LPDVVTYNTLIDGCSQWRDSSEVYSLIEEMDKKGVKCNAVTYNIILKWMCKKGN 403


>gi|297800104|ref|XP_002867936.1| hypothetical protein ARALYDRAFT_492917 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297313772|gb|EFH44195.1| hypothetical protein ARALYDRAFT_492917 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 817

 Score =  198 bits (503), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 138/507 (27%), Positives = 246/507 (48%), Gaps = 9/507 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C   +V EA +LF  M+  G VPNVV+Y T+I G   +G  D A+   ++M   GV
Sbjct: 259 INAFCKGGKVEEAIELFSKMEEAGVVPNVVTYNTVIDGLGMSGRYDEAFMFKEKMVERGV 318

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P  +TYS+LV+G+ + + +  A  ++ ++ E+         N   + NL+DSL   G +
Sbjct: 319 EPTLITYSILVKGLTKAKRIGDAYCVLKEMTEK-----GFPPNVIVYNNLIDSLIEAGSL 373

Query: 121 NEVFRIAEDM-PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           N+   I + M  +G S+        +I   C+SG+   A R++  M   G   +  S+ S
Sbjct: 374 NKAIEIKDLMVSKGLSLTSS-TYNTLIKGYCKSGQADIAERLLKEMLSIGFNVNQGSFTS 432

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++  LC H     A + + E +     P       L+ GLC      KA ++    L+K 
Sbjct: 433 VICLLCSHHMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKAVELWLKFLNKG 492

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
            +  T+  N  L  LC      E   +   +L      D ++ NT+I+G C   +++EA 
Sbjct: 493 FLVDTKTSNALLHGLCEAGKLEEGFRIQKEILGRGFVMDRVSYNTLISGCCGNKKLDEAF 552

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
             +++MV  K   PD  T++ +I GLLN+ +++EA+   +    + G  P + TY+ ++ 
Sbjct: 553 MFMDEMVK-KGLKPDNYTYSILIRGLLNMNKVEEAIQF-WGDCKRNGMIPDVYTYSVMID 610

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
           G  +  R EE +++F+ M+   +  ++  Y  +I   C S +L  A    +D+       
Sbjct: 611 GCCKAERTEEGQKLFDEMMSNNLQPNTVVYNHLIGAYCRSGRLSMALELREDMKHKGISP 670

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           ++  Y ++IKG+    ++ EA   L E+   G+ PN+  Y  +IDG  KL    +   +L
Sbjct: 671 NSATYTSLIKGMSIISRVEEAKLLLEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLL 730

Query: 480 REMRKNGLNPDAVTWRILDKLHGNRGN 506
           REM    ++P+ +T+ ++   +   GN
Sbjct: 731 REMHSKNVHPNKITYTVMIGGYARDGN 757



 Score =  194 bits (494), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 126/505 (24%), Positives = 253/505 (50%), Gaps = 9/505 (1%)

Query: 4   LCGLSRVGEAHKL--FFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVL 61
           L  L R  E  K    F +  +G  P+V  +TT I+ +C+ G+++ A ++F +M   GV+
Sbjct: 225 LTSLVRATEFQKCCEAFHVVCKGVSPDVYLFTTAINAFCKGGKVEEAIELFSKMEEAGVV 284

Query: 62  PNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVN 121
           PN +TY+ ++ G+  +   + A +   K+ ER  E   ++     ++ LV  L +   + 
Sbjct: 285 PNVVTYNTVIDGLGMSGRYDEAFMFKEKMVERGVEPTLIT-----YSILVKGLTKAKRIG 339

Query: 122 EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
           + + + ++M +           ++IDSL  +G  + A  +  +M  +GL+ +  +YN+++
Sbjct: 340 DAYCVLKEMTEKGFPPNVIVYNNLIDSLIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLI 399

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
            G CK G    A +LL+E +  G+  ++ ++  ++  LC     + A + +  ML +   
Sbjct: 400 KGYCKSGQADIAERLLKEMLSIGFNVNQGSFTSVICLLCSHHMFDSALRFVGEMLLRNMS 459

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
               +    +  LC     ++ + + +  L      D  T N +++G C+ G++EE  ++
Sbjct: 460 PGGGLLTTLISGLCKHGKHSKAVELWLKFLNKGFLVDTKTSNALLHGLCEAGKLEEGFRI 519

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
             +++   F   D V++ T+I G     ++ EA   + + M ++G  P   TY+ ++RGL
Sbjct: 520 QKEILGRGFVM-DRVSYNTLISGCCGNKKLDEAFMFMDE-MVKKGLKPDNYTYSILIRGL 577

Query: 362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
             + +VEEA + +      G++ D  TY+++IDG C++ + +E ++ +D+++  +   + 
Sbjct: 578 LNMNKVEEAIQFWGDCKRNGMIPDVYTYSVMIDGCCKAERTEEGQKLFDEMMSNNLQPNT 637

Query: 422 YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
            VY  +I   CRSG++  A+    ++   G++PN   Y  +I G   +S   EA  +L E
Sbjct: 638 VVYNHLIGAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLLEE 697

Query: 482 MRKNGLNPDAVTWRILDKLHGNRGN 506
           MR  GL P+   +  L   +G  G 
Sbjct: 698 MRMEGLEPNVFHYTALIDGYGKLGQ 722



 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 125/463 (26%), Positives = 216/463 (46%), Gaps = 11/463 (2%)

Query: 35  LIHGYCRTGEMD---VAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLW 91
           LI  YC   + D   +A  VF  + + G+ P+  T ++L+  ++R  + ++       + 
Sbjct: 186 LIEVYCTQFKRDGCYLALDVFPVLANKGMFPSKTTCNILLTSLVRATEFQKCCEAFHVVC 245

Query: 92  ERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCR 151
           +       +S +   F   +++ C+ G V E   +   M +   V        +ID L  
Sbjct: 246 K------GVSPDVYLFTTAINAFCKGGKVEEAIELFSKMEEAGVVPNVVTYNTVIDGLGM 299

Query: 152 SGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHT 211
           SGR   A      M +RG+ P+L++Y+ +V GL K      AY +L+E  + G+ P+   
Sbjct: 300 SGRYDEAFMFKEKMVERGVEPTLITYSILVKGLTKAKRIGDAYCVLKEMTEKGFPPNVIV 359

Query: 212 YKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFML 271
           Y  L++ L     L KA ++   M+SK     +   N  ++  C          +L  ML
Sbjct: 360 YNNLIDSLIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKSGQADIAERLLKEML 419

Query: 272 QTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRI 331
                 +  +  +VI   C     + AL+ + +M+  +  +P     TT+I GL   G+ 
Sbjct: 420 SIGFNVNQGSFTSVICLLCSHHMFDSALRFVGEMLL-RNMSPGGGLLTTLISGLCKHGKH 478

Query: 332 QEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAI 391
            +A+ L  + +  +G+     T NA+L GL    ++EE   +   +LG G V D  +Y  
Sbjct: 479 SKAVELWLKFL-NKGFLVDTKTSNALLHGLCEAGKLEEGFRIQKEILGRGFVMDRVSYNT 537

Query: 392 VIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 451
           +I G C + +LDEA  F D++V      DNY Y+ +I+GL    K+ EA+ F  +   +G
Sbjct: 538 LISGCCGNKKLDEAFMFMDEMVKKGLKPDNYTYSILIRGLLNMNKVEEAIQFWGDCKRNG 597

Query: 452 VTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
           + P++  Y+V+IDG CK     E  ++  EM  N L P+ V +
Sbjct: 598 MIPDVYTYSVMIDGCCKAERTEEGQKLFDEMMSNNLQPNTVVY 640



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 110/473 (23%), Positives = 208/473 (43%), Gaps = 54/473 (11%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           R+G+A+ +  +M  +G  PNV+ Y  LI      G ++ A ++ D M   G+   S TY+
Sbjct: 337 RIGDAYCVLKEMTEKGFPPNVIVYNNLIDSLIEAGSLNKAIEIKDLMVSKGLSLTSSTYN 396

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
            L++G  ++   + A  L+ ++          +VN  +F +++  LC     +   R   
Sbjct: 397 TLIKGYCKSGQADIAERLLKEMLSI-----GFNVNQGSFTSVICLLCSHHMFDSALRFVG 451

Query: 129 DM------PQG------------------------KSVNEEF-----ACGHMIDSLCRSG 153
           +M      P G                        K +N+ F         ++  LC +G
Sbjct: 452 EMLLRNMSPGGGLLTTLISGLCKHGKHSKAVELWLKFLNKGFLVDTKTSNALLHGLCEAG 511

Query: 154 RNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYK 213
           +     R+   +  RG     VSYN+++ G C +     A+  ++E ++ G  P  +TY 
Sbjct: 512 KLEEGFRIQKEILGRGFVMDRVSYNTLISGCCGNKKLDEAFMFMDEMVKKGLKPDNYTYS 571

Query: 214 VLVEGLCGESDLEKARKVLQFMLSKKDVDRT-RICNIYLRAL-----CLIKNPTELLNVL 267
           +L+ GL    ++ K  + +QF     D  R   I ++Y  ++     C  +   E   + 
Sbjct: 572 ILIRGLL---NMNKVEEAIQFW---GDCKRNGMIPDVYTYSVMIDGCCKAERTEEGQKLF 625

Query: 268 VFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLN 327
             M+    QP+ +  N +I  +C+ GR+  AL++  DM   K  +P++ T+T++I G+  
Sbjct: 626 DEMMSNNLQPNTVVYNHLIGAYCRSGRLSMALELREDM-KHKGISPNSATYTSLIKGMSI 684

Query: 328 VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADST 387
           + R++EA  LL + M   G  P +  Y A++ G  +L ++ + + +   M    V  +  
Sbjct: 685 ISRVEEA-KLLLEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKI 743

Query: 388 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEA 440
           TY ++I G      + EA R   ++     + D+  Y   I G  + G + +A
Sbjct: 744 TYTVMIGGYARDGNVTEASRLLHEMREKGIVPDSITYKEFIYGYLKQGGVLQA 796



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 108/218 (49%), Gaps = 15/218 (6%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C   R  E  KLF +M S    PN V Y  LI  YCR+G + +A ++ ++M+H G+
Sbjct: 609 IDGCCKAERTEEGQKLFDEMMSNNLQPNTVVYNHLIGAYCRSGRLSMALELREDMKHKGI 668

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PNS TY+ L++G+     VE A +L+ ++  RM   E L  N   +  L+D   + G +
Sbjct: 669 SPNSATYTSLIKGMSIISRVEEAKLLLEEM--RM---EGLEPNVFHYTALIDGYGKLGQM 723

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +V  +  +M        +     MI    R G    ASR+++ MR++G+ P  ++Y   
Sbjct: 724 VKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLHEMREKGIVPDSITYKEF 783

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEG 218
           ++G  K GG ++A++             E  Y  ++EG
Sbjct: 784 IYGYLKQGGVLQAFK----------GSDEENYAAIIEG 811


>gi|18391414|ref|NP_563911.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75167758|sp|Q9ASZ8.1|PPR37_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g12620
 gi|13605505|gb|AAK32746.1|AF361578_1 At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|24111307|gb|AAN46777.1| At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|332190781|gb|AEE28902.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 621

 Score =  198 bits (503), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 134/505 (26%), Positives = 240/505 (47%), Gaps = 43/505 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   RV EA +L   M   GH P +++   L++G C  G++  A  + D M   G 
Sbjct: 149 INGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGF 208

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +TY  +++ + ++     A  L+ K+     EE  + ++   ++ ++D LC++G +
Sbjct: 209 QPNEVTYGPVLKVMCKSGQTALAMELLRKM-----EERKIKLDAVKYSIIIDGLCKDGSL 263

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +  F +  +M       +      +I   C +GR    ++++  M KR +TP +V+++++
Sbjct: 264 DNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSAL 323

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +    K G    A +L +E IQ G  P   TY  L++G C E+ L+KA  +L  M+SK  
Sbjct: 324 IDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSK-- 381

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                             C P++ T N +ING+CK   I++ L+
Sbjct: 382 ---------------------------------GCGPNIRTFNILINGYCKANLIDDGLE 408

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +   M      A D VT+ T+I G   +G+++ A   L+Q M  R   P IV+Y  +L G
Sbjct: 409 LFRKMSLRGVVA-DTVTYNTLIQGFCELGKLEVAKE-LFQEMVSRRVRPDIVSYKILLDG 466

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L      E+A E+F  +    +  D   Y I+I G+C ++++D+A   +  +       D
Sbjct: 467 LCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPD 526

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              Y  MI GLC+ G + EA     ++ + G +PN   YN++I          ++ +++ 
Sbjct: 527 VKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIE 586

Query: 481 EMRKNGLNPDAVTWR-ILDKLHGNR 504
           E+++ G + DA T + ++D L   R
Sbjct: 587 EIKRCGFSVDASTVKMVVDMLSDGR 611



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 138/491 (28%), Positives = 242/491 (49%), Gaps = 15/491 (3%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M+ +G   N+ + + +I+  CR  ++ +A+    ++   G  P+++T+S L+ G+     
Sbjct: 98  MELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGR 157

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
           V  A  L+ ++ E M  +  L   NA    LV+ LC  G V++   + + M +      E
Sbjct: 158 VSEALELVDRMVE-MGHKPTLITLNA----LVNGLCLNGKVSDAVLLIDRMVETGFQPNE 212

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
              G ++  +C+SG+   A  ++  M +R +    V Y+ I+ GLCK G    A+ L  E
Sbjct: 213 VTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNE 272

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRAL--CLI 257
               G+      Y  L+ G C     +   K+L+ M+ +K         +   AL  C +
Sbjct: 273 MEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDV----VAFSALIDCFV 328

Query: 258 KNPT--ELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA 315
           K     E   +   M+Q    PD +T  ++I+GFCK  ++++A  +L+ MV+ K C P+ 
Sbjct: 329 KEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVS-KGCGPNI 387

Query: 316 VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN 375
            TF  +I G      I + L L ++ M  RG     VTYN +++G   L ++E AKE+F 
Sbjct: 388 RTFNILINGYCKANLIDDGLEL-FRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQ 446

Query: 376 CMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG 435
            M+   V  D  +Y I++DGLC++ + ++A   ++ I       D  +Y  +I G+C + 
Sbjct: 447 EMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNAS 506

Query: 436 KIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWR 495
           K+ +A      L   GV P++  YN++I G CK     EA  + R+M ++G +P+  T+ 
Sbjct: 507 KVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYN 566

Query: 496 ILDKLHGNRGN 506
           IL + H   G+
Sbjct: 567 ILIRAHLGEGD 577



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 99/391 (25%), Positives = 185/391 (47%), Gaps = 2/391 (0%)

Query: 107 FANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMR 166
           F+ L   + R    + V  + + M      +  +    MI+  CR  +   A   +  + 
Sbjct: 75  FSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKII 134

Query: 167 KRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLE 226
           K G  P  V+++++++GLC  G    A +L++  ++ G+ P+  T   LV GLC    + 
Sbjct: 135 KLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVS 194

Query: 227 KARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVI 286
            A  ++  M+              L+ +C        + +L  M + + + D +  + +I
Sbjct: 195 DAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIII 254

Query: 287 NGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
           +G CK G ++ A  + N+M    F A D + +TT+I G    GR  +   LL   M +R 
Sbjct: 255 DGLCKDGSLDNAFNLFNEMEIKGFKA-DIIIYTTLIRGFCYAGRWDDGAKLLRD-MIKRK 312

Query: 347 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
            +P +V ++A++    +  ++ EA+E+   M+  G+  D+ TY  +IDG C+ NQLD+A 
Sbjct: 313 ITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKAN 372

Query: 407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466
              D +V      +   +  +I G C++  I + +    ++   GV  + V YN +I G 
Sbjct: 373 HMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGF 432

Query: 467 CKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           C+L     A ++ +EM    + PD V+++IL
Sbjct: 433 CELGKLEVAKELFQEMVSRRVRPDIVSYKIL 463


>gi|357474081|ref|XP_003607325.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355508380|gb|AES89522.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 834

 Score =  198 bits (503), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 134/495 (27%), Positives = 248/495 (50%), Gaps = 8/495 (1%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           EA +L  +M S G   NV+   +L+ GYC  G++++A ++FDE+   GV+P+ + +SVL+
Sbjct: 308 EALRLKDEMVSVGLPMNVIVTRSLMKGYCVLGDVNLALQLFDEVVEGGVVPDVVIFSVLI 367

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP 131
            G  +  D+E+A    ++L+ RMK    +  N     +L++    +  +   + + ++  
Sbjct: 368 NGCSKVGDMEKA----YELYTRMKLM-GIQPNVFIVNSLLEGFHEQNLLEHAYGLFDEAV 422

Query: 132 QGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCM 191
           +   +        ++  L   G+ + A  +   M  +G+TPSLVSYN+++ G CK G   
Sbjct: 423 E-HGITNVVTYNILLKWLGELGKVNEACNLWEKMVSKGITPSLVSYNNLILGHCKKGCMD 481

Query: 192 RAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYL 251
           +AY +L+  ++ G  P+  TY +L++G   + D E+A  V + M++          N  +
Sbjct: 482 KAYSMLKSILERGLKPNAVTYTLLIDGFFKKGDSERAFVVFEQMMAANIAPTDHTFNTVI 541

Query: 252 RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC 311
             L      +E  + L   ++       IT N++I+GF K G ++ AL    +M      
Sbjct: 542 NGLGKTGRVSETQDKLNNFIKQGFVSTSITYNSIIDGFFKEGAVDSALLAYREMCESGI- 600

Query: 312 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK 371
           +PD +T+T++I GL    +I  AL + +  M  +G    +V Y+A++ G  ++  +E A 
Sbjct: 601 SPDVITYTSLIDGLCKSNKIGLALEM-HSDMKYKGMKLDVVAYSALIDGFCKMHDMESAS 659

Query: 372 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 431
           + F  +L IG+  ++  Y  +I G    N ++ A     +++      D  VY ++I GL
Sbjct: 660 KFFTELLDIGLTPNTVVYNSMISGFIHLNNMEAALNLHQEMIKNKVPCDLQVYTSIIGGL 719

Query: 432 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 491
            + GK+  A+    E++   + P+IV Y V+I+G         A +IL+EM  N + P  
Sbjct: 720 LKEGKLSLALDLYSEMLSKDIVPDIVMYTVLINGLSNNGQLENASKILKEMDGNNITPSV 779

Query: 492 VTWRILDKLHGNRGN 506
           + + IL   +   GN
Sbjct: 780 LVYNILIAGNFREGN 794



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 130/477 (27%), Positives = 226/477 (47%), Gaps = 14/477 (2%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           E  K F + K RG   +  +Y+ L+   CR  ++++A ++  EMR  G +P+  TY+ ++
Sbjct: 238 EVEKFFKEAKGRGLEVDAAAYSILVQAVCRRLDLNLACELLKEMREFGWVPSKGTYTAVI 297

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEE---DLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
              ++  +   A         R+K+E     L +N     +L+   C  G VN   ++ +
Sbjct: 298 VACVKQGNFVEA--------LRLKDEMVSVGLPMNVIVTRSLMKGYCVLGDVNLALQLFD 349

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
           ++ +G  V +      +I+   + G    A  +   M+  G+ P++   NS++ G  +  
Sbjct: 350 EVVEGGVVPDVVIFSVLINGCSKVGDMEKAYELYTRMKLMGIQPNVFIVNSLLEGFHEQN 409

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
               AY L +E ++ G + +  TY +L++ L     + +A  + + M+SK         N
Sbjct: 410 LLEHAYGLFDEAVEHG-ITNVVTYNILLKWLGELGKVNEACNLWEKMVSKGITPSLVSYN 468

Query: 249 IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 308
             +   C      +  ++L  +L+   +P+ +T   +I+GF K G  E A  V   M+A 
Sbjct: 469 NLILGHCKKGCMDKAYSMLKSILERGLKPNAVTYTLLIDGFFKKGDSERAFVVFEQMMAA 528

Query: 309 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE 368
              AP   TF T+I GL   GR+ E  + L   + Q G+    +TYN+++ G F+   V+
Sbjct: 529 NI-APTDHTFNTVINGLGKTGRVSETQDKLNNFIKQ-GFVSTSITYNSIIDGFFKEGAVD 586

Query: 369 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI 428
            A   +  M   G+  D  TY  +IDGLC+SN++  A     D+ +     D   Y+A+I
Sbjct: 587 SALLAYREMCESGISPDVITYTSLIDGLCKSNKIGLALEMHSDMKYKGMKLDVVAYSALI 646

Query: 429 KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN 485
            G C+   +  A  F  EL+D G+TPN V YN +I G   L+    A  + +EM KN
Sbjct: 647 DGFCKMHDMESASKFFTELLDIGLTPNTVVYNSMISGFIHLNNMEAALNLHQEMIKN 703



 Score =  167 bits (424), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 110/389 (28%), Positives = 195/389 (50%), Gaps = 7/389 (1%)

Query: 7   LSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLT 66
           L +V EA  L+  M S+G  P++VSY  LI G+C+ G MD AY +   +   G+ PN++T
Sbjct: 442 LGKVNEACNLWEKMVSKGITPSLVSYNNLILGHCKKGCMDKAYSMLKSILERGLKPNAVT 501

Query: 67  YSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRI 126
           Y++L+ G  +  D ERA    F ++E+M    +++  +  F  +++ L + G V+E    
Sbjct: 502 YTLLIDGFFKKGDSERA----FVVFEQMMAA-NIAPTDHTFNTVINGLGKTGRVSETQDK 556

Query: 127 AEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK 186
             +  +   V+       +ID   + G    A      M + G++P +++Y S++ GLCK
Sbjct: 557 LNNFIKQGFVSTSITYNSIIDGFFKEGAVDSALLAYREMCESGISPDVITYTSLIDGLCK 616

Query: 187 HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRI 246
                 A ++  +    G       Y  L++G C   D+E A K    +L       T +
Sbjct: 617 SNKIGLALEMHSDMKYKGMKLDVVAYSALIDGFCKMHDMESASKFFTELLDIGLTPNTVV 676

Query: 247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV 306
            N  +     + N    LN+   M++ +   D+    ++I G  K G++  AL + ++M+
Sbjct: 677 YNSMISGFIHLNNMEAALNLHQEMIKNKVPCDLQVYTSIIGGLLKEGKLSLALDLYSEML 736

Query: 307 AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 366
           + K   PD V +T +I GL N G+++ A  +L + M     +P ++ YN ++ G FR   
Sbjct: 737 S-KDIVPDIVMYTVLINGLSNNGQLENASKILKE-MDGNNITPSVLVYNILIAGNFREGN 794

Query: 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDG 395
           ++EA  + + ML  G+V D TTY I+++G
Sbjct: 795 LQEAFRLHDEMLDKGLVPDDTTYDILVNG 823



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 123/505 (24%), Positives = 228/505 (45%), Gaps = 43/505 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M   C L  V  A +LF ++   G VP+VV ++ LI+G  + G+M+ AY+++  M+  G+
Sbjct: 332 MKGYCVLGDVNLALQLFDEVVEGGVVPDVVIFSVLINGCSKVGDMEKAYELYTRMKLMGI 391

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFAN-LVDSLCREGY 119
            PN    + L+ G      +E A    + L++   E     + N    N L+  L   G 
Sbjct: 392 QPNVFIVNSLLEGFHEQNLLEHA----YGLFDEAVEH---GITNVVTYNILLKWLGELGK 444

Query: 120 VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           VNE   + E M          +  ++I   C+ G    A  ++  + +RGL P+ V+Y  
Sbjct: 445 VNEACNLWEKMVSKGITPSLVSYNNLILGHCKKGCMDKAYSMLKSILERGLKPNAVTYTL 504

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++ G  K G   RA+ + E+ +     P++HT+  ++ GL     + + +  L   + + 
Sbjct: 505 LIDGFFKKGDSERAFVVFEQMMAANIAPTDHTFNTVINGLGKTGRVSETQDKLNNFIKQG 564

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
            V  +   N  +            L     M ++   PDVIT  ++I+G CK  +I  AL
Sbjct: 565 FVSTSITYNSIIDGFFKEGAVDSALLAYREMCESGISPDVITYTSLIDGLCKSNKIGLAL 624

Query: 300 KVLNDM--------------------------VAGKF--------CAPDAVTFTTIIFGL 325
           ++ +DM                           A KF          P+ V + ++I G 
Sbjct: 625 EMHSDMKYKGMKLDVVAYSALIDGFCKMHDMESASKFFTELLDIGLTPNTVVYNSMISGF 684

Query: 326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 385
           +++  ++ ALNL +Q M +      +  Y +++ GL +  ++  A ++++ ML   +V D
Sbjct: 685 IHLNNMEAALNL-HQEMIKNKVPCDLQVYTSIIGGLLKEGKLSLALDLYSEMLSKDIVPD 743

Query: 386 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY 445
              Y ++I+GL  + QL+ A +   ++   +      VY  +I G  R G + EA     
Sbjct: 744 IVMYTVLINGLSNNGQLENASKILKEMDGNNITPSVLVYNILIAGNFREGNLQEAFRLHD 803

Query: 446 ELVDSGVTPNIVCYNVVIDGACKLS 470
           E++D G+ P+   Y+++++G  K+S
Sbjct: 804 EMLDKGLVPDDTTYDILVNGKLKVS 828



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 102/493 (20%), Positives = 221/493 (44%), Gaps = 44/493 (8%)

Query: 43  GEMDVAYKVFDE-MRHC----GVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEE 97
           G+   + KVF E +  C    G   +S  ++ L++  +R   +  A V  F    R   E
Sbjct: 124 GDATPSAKVFVECLLECSGRYGFESDSRVFNYLLKSFVRVNKITDA-VECF----RTMLE 178

Query: 98  EDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHG 157
            DL        NL+ ++ R   V +  ++ ++M +     + +    ++ +  + G+   
Sbjct: 179 HDLVPWVPIMNNLLTAMVRRNMVCDARQLYDEMVERGIYGDCYTLHVVMRACMKEGKFEE 238

Query: 158 ASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVE 217
             +     + RGL     +Y+ +V  +C+      A +LL+E  +FG++PS+ TY  ++ 
Sbjct: 239 VEKFFKEAKGRGLEVDAAAYSILVQAVCRRLDLNLACELLKEMREFGWVPSKGTYTAVIV 298

Query: 218 GLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQP 277
               + +  +A ++   M+S        +    ++  C++ +    L +   +++    P
Sbjct: 299 ACVKQGNFVEALRLKDEMVSVGLPMNVIVTRSLMKGYCVLGDVNLALQLFDEVVEGGVVP 358

Query: 278 DVITLNTVINGFCKMGRIEEALK---------------VLNDMVAG-------------- 308
           DV+  + +ING  K+G +E+A +               ++N ++ G              
Sbjct: 359 DVVIFSVLINGCSKVGDMEKAYELYTRMKLMGIQPNVFIVNSLLEGFHEQNLLEHAYGLF 418

Query: 309 ----KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
               +    + VT+  ++  L  +G++ EA N L++ M  +G +P +V+YN ++ G  + 
Sbjct: 419 DEAVEHGITNVVTYNILLKWLGELGKVNEACN-LWEKMVSKGITPSLVSYNNLILGHCKK 477

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY 424
             +++A  +   +L  G+  ++ TY ++IDG  +    + A   ++ ++  +    ++ +
Sbjct: 478 GCMDKAYSMLKSILERGLKPNAVTYTLLIDGFFKKGDSERAFVVFEQMMAANIAPTDHTF 537

Query: 425 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484
             +I GL ++G++ E    L   +  G     + YN +IDG  K      A    REM +
Sbjct: 538 NTVINGLGKTGRVSETQDKLNNFIKQGFVSTSITYNSIIDGFFKEGAVDSALLAYREMCE 597

Query: 485 NGLNPDAVTWRIL 497
           +G++PD +T+  L
Sbjct: 598 SGISPDVITYTSL 610



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 77/345 (22%), Positives = 148/345 (42%), Gaps = 29/345 (8%)

Query: 164 VMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGL---C 220
           V RKRG   ++   + ++H L  +     + Q L     FG   +  + KV VE L    
Sbjct: 84  VERKRGFVKTVDFISLLIHILSSNSKTCSSLQFLLNNYVFG--DATPSAKVFVECLLECS 141

Query: 221 GESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVI 280
           G    E                 +R+ N  L++   +   T+ +     ML+    P V 
Sbjct: 142 GRYGFE---------------SDSRVFNYLLKSFVRVNKITDAVECFRTMLEHDLVPWVP 186

Query: 281 TLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQ 340
            +N ++    +   + +A ++ ++MV  +    D  T   ++   +  G+ +E +   ++
Sbjct: 187 IMNNLLTAMVRRNMVCDARQLYDEMVE-RGIYGDCYTLHVVMRACMKEGKFEE-VEKFFK 244

Query: 341 VMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN 400
               RG       Y+ +++ + R   +  A E+   M   G V    TY  VI    +  
Sbjct: 245 EAKGRGLEVDAAAYSILVQAVCRRLDLNLACELLKEMREFGWVPSKGTYTAVIVACVKQG 304

Query: 401 QLDEAKRFWDDIV---WPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIV 457
              EA R  D++V    P N+    V  +++KG C  G ++ A+    E+V+ GV P++V
Sbjct: 305 NFVEALRLKDEMVSVGLPMNV---IVTRSLMKGYCVLGDVNLALQLFDEVVEGGVVPDVV 361

Query: 458 CYNVVIDGACKLSMKREAYQILREMRKNGLNPDA-VTWRILDKLH 501
            ++V+I+G  K+    +AY++   M+  G+ P+  +   +L+  H
Sbjct: 362 IFSVLINGCSKVGDMEKAYELYTRMKLMGIQPNVFIVNSLLEGFH 406



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 72/349 (20%), Positives = 149/349 (42%), Gaps = 5/349 (1%)

Query: 159 SRVVYVMRKRGLTPSLVSY--NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLV 216
           S +++++     T S + +  N+ V G       +    LLE   ++G+      +  L+
Sbjct: 98  SLLIHILSSNSKTCSSLQFLLNNYVFGDATPSAKVFVECLLECSGRYGFESDSRVFNYLL 157

Query: 217 EGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQ 276
           +     + +  A +  + ML    V    I N  L A+       +   +   M++    
Sbjct: 158 KSFVRVNKITDAVECFRTMLEHDLVPWVPIMNNLLTAMVRRNMVCDARQLYDEMVERGIY 217

Query: 277 PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALN 336
            D  TL+ V+    K G+ EE  K   +   G+    DA  ++ ++  +     +  A  
Sbjct: 218 GDCYTLHVVMRACMKEGKFEEVEKFFKE-AKGRGLEVDAAAYSILVQAVCRRLDLNLACE 276

Query: 337 LLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 396
           LL + M + G+ P   TY AV+    +     EA  + + M+ +G+  +      ++ G 
Sbjct: 277 LLKE-MREFGWVPSKGTYTAVIVACVKQGNFVEALRLKDEMVSVGLPMNVIVTRSLMKGY 335

Query: 397 CESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNI 456
           C    ++ A + +D++V    + D  +++ +I G  + G + +A      +   G+ PN+
Sbjct: 336 CVLGDVNLALQLFDEVVEGGVVPDVVIFSVLINGCSKVGDMEKAYELYTRMKLMGIQPNV 395

Query: 457 VCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
              N +++G  + ++   AY +  E  ++G+  + VT+ IL K  G  G
Sbjct: 396 FIVNSLLEGFHEQNLLEHAYGLFDEAVEHGIT-NVVTYNILLKWLGELG 443


>gi|300681581|emb|CBI75525.1| PPR repeat domain containing protein [Triticum aestivum]
          Length = 728

 Score =  198 bits (503), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 134/485 (27%), Positives = 228/485 (47%), Gaps = 44/485 (9%)

Query: 15  KLFFDMKSRGHVPNVVSYTTLIHGYCRTGEM--DVAYKVFDEMRHCGVLPNSLTYSVLVR 72
            LF DMK  G  PN+ SY+ L+  Y    ++  + A ++  EM   GV PN+ TY   + 
Sbjct: 197 SLFDDMKISGPSPNIYSYSVLMSMYTHGAKLCLEEAQELLSEMEVEGVRPNAATYGTYLY 256

Query: 73  GVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQ 132
           G+ R + V+ A   +  L +R         N+  F  ++   C +G V++   + + M +
Sbjct: 257 GLCRAKQVKSAWNFLQMLCQR-----GYPCNSYCFNAVIHGFCHDGQVHKAVEVFDGMKK 311

Query: 133 GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMR 192
              V +  +   ++D LC+ G       ++  M + G+TP+LVSY+S++HGLC+ G    
Sbjct: 312 CGFVPDVHSYSILVDGLCKQGDVLTGYYMLVEMARNGITPNLVSYSSLLHGLCRAGRVEL 371

Query: 193 AYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLR 252
           A++L +     G+      Y +++ G C   DLE                   IC     
Sbjct: 372 AFELFKRLKDQGFKHDHIVYSIVLHGCCQHLDLE-------------------IC----- 407

Query: 253 ALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCA 312
                    +L N    M+     PD    +++I  +C+  +++EAL+V   M+    C 
Sbjct: 408 --------YDLWND---MVHHNFVPDAYNYSSLIYAYCRHRQLKEALEVFELMICDGIC- 455

Query: 313 PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKE 372
           P+ VT T ++ G  N G I EA   L +V  Q G  P + TY  ++ GL ++ +  +   
Sbjct: 456 PNVVTCTILVHGFSNEGLIGEAFLFLDKVR-QFGVVPNLCTYRVIINGLCKVNKPNDVWG 514

Query: 373 VFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLC 432
           +F  M+  G V D+  Y+I+IDG  ++  L EA R +  +V      + + Y ++I GLC
Sbjct: 515 IFADMIKRGYVPDTVLYSIIIDGFVKALDLQEAFRLYYKMVDEGTKPNIFTYTSLINGLC 574

Query: 433 RSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAV 492
              K+ E +     ++  G+TP+ + Y  +I   CK S  + A +I REM   GL+ D+ 
Sbjct: 575 HDDKLPEVMTLFKHMIGEGLTPDRILYTSLIACYCKRSNMKAALEIFREMETEGLSADSF 634

Query: 493 TWRIL 497
            +  L
Sbjct: 635 VYTCL 639



 Score =  181 bits (459), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 123/506 (24%), Positives = 222/506 (43%), Gaps = 44/506 (8%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   +V  A      +  RG+  N   +  +IHG+C  G++  A +VFD M+ CG +P+
Sbjct: 258 LCRAKQVKSAWNFLQMLCQRGYPCNSYCFNAVIHGFCHDGQVHKAVEVFDGMKKCGFVPD 317

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             +YS+LV G+ +  DV     ++ ++         ++ N  ++++L+  LCR G V   
Sbjct: 318 VHSYSILVDGLCKQGDVLTGYYMLVEM-----ARNGITPNLVSYSSLLHGLCRAGRVELA 372

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           F + +                                    ++ +G     + Y+ ++HG
Sbjct: 373 FELFKR-----------------------------------LKDQGFKHDHIVYSIVLHG 397

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            C+H      Y L  + +   ++P  + Y  L+   C    L++A +V + M+       
Sbjct: 398 CCQHLDLEICYDLWNDMVHHNFVPDAYNYSSLIYAYCRHRQLKEALEVFELMICDGICPN 457

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
              C I +          E    L  + Q    P++ T   +ING CK+ +  +   +  
Sbjct: 458 VVTCTILVHGFSNEGLIGEAFLFLDKVRQFGVVPNLCTYRVIINGLCKVNKPNDVWGIFA 517

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           DM+   +  PD V ++ II G +    +QEA  L Y+ M   G  P I TY +++ GL  
Sbjct: 518 DMIKRGY-VPDTVLYSIIIDGFVKALDLQEAFRLYYK-MVDEGTKPNIFTYTSLINGLCH 575

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
             ++ E   +F  M+G G+  D   Y  +I   C+ + +  A   + ++       D++V
Sbjct: 576 DDKLPEVMTLFKHMIGEGLTPDRILYTSLIACYCKRSNMKAALEIFREMETEGLSADSFV 635

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y  +I G  +   +  A  F+ E+++ G+TP +V Y  +I G  K+  +++A  +   M 
Sbjct: 636 YTCLIGGFSKVLAMDGAQLFMEEMMNKGLTPTVVTYTDLIIGYFKIGDEKKAMVMYNSML 695

Query: 484 KNGLNPDAVTWRILDKLHGNRGNDFG 509
           + G+ PDA    IL    GN G+DF 
Sbjct: 696 QAGIAPDAKLSCILGL--GNDGDDFA 719



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 99/397 (24%), Positives = 187/397 (47%), Gaps = 17/397 (4%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    V   + +  +M   G  PN+VSY++L+HG CR G +++A+++F  ++  G 
Sbjct: 325 VDGLCKQGDVLTGYYMLVEMARNGITPNLVSYSSLLHGLCRAGRVELAFELFKRLKDQGF 384

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             + + YS+++ G  +  D+E    + + LW  M    +   +   +++L+ + CR   +
Sbjct: 385 KHDHIVYSIVLHGCCQHLDLE----ICYDLWNDMV-HHNFVPDAYNYSSLIYAYCRHRQL 439

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E   + E M           C  ++      G    A   +  +R+ G+ P+L +Y  I
Sbjct: 440 KEALEVFELMICDGICPNVVTCTILVHGFSNEGLIGEAFLFLDKVRQFGVVPNLCTYRVI 499

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++GLCK       + +  + I+ GY+P    Y ++++G     DL++A     F L  K 
Sbjct: 500 INGLCKVNKPNDVWGIFADMIKRGYVPDTVLYSIIIDGFVKALDLQEA-----FRLYYKM 554

Query: 241 VDRTRICNIY-----LRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 295
           VD     NI+     +  LC      E++ +   M+     PD I   ++I  +CK   +
Sbjct: 555 VDEGTKPNIFTYTSLINGLCHDDKLPEVMTLFKHMIGEGLTPDRILYTSLIACYCKRSNM 614

Query: 296 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN 355
           + AL++  +M      A D+  +T +I G   V  +  A  L  + M  +G +P +VTY 
Sbjct: 615 KAALEIFREMETEGLSA-DSFVYTCLIGGFSKVLAMDGA-QLFMEEMMNKGLTPTVVTYT 672

Query: 356 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIV 392
            ++ G F++   ++A  ++N ML  G+  D+    I+
Sbjct: 673 DLIIGYFKIGDEKKAMVMYNSMLQAGIAPDAKLSCIL 709



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 89/326 (27%), Positives = 160/326 (49%), Gaps = 12/326 (3%)

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVE------GLCGESDLEKARKV 231
           N ++ GL +    M    L ++    G  P+ ++Y VL+        LC    LE+A+++
Sbjct: 180 NFLLKGLVEGNQIMYVRSLFDDMKISGPSPNIYSYSVLMSMYTHGAKLC----LEEAQEL 235

Query: 232 LQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK 291
           L  M  +           YL  LC  K      N L  + Q     +    N VI+GFC 
Sbjct: 236 LSEMEVEGVRPNAATYGTYLYGLCRAKQVKSAWNFLQMLCQRGYPCNSYCFNAVIHGFCH 295

Query: 292 MGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGI 351
            G++ +A++V + M    F  PD  +++ ++ GL   G +     +L + M + G +P +
Sbjct: 296 DGQVHKAVEVFDGMKKCGF-VPDVHSYSILVDGLCKQGDVLTGYYMLVE-MARNGITPNL 353

Query: 352 VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDD 411
           V+Y+++L GL R  RVE A E+F  +   G   D   Y+IV+ G C+   L+     W+D
Sbjct: 354 VSYSSLLHGLCRAGRVELAFELFKRLKDQGFKHDHIVYSIVLHGCCQHLDLEICYDLWND 413

Query: 412 IVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSM 471
           +V  + + D Y Y+++I   CR  ++ EA+     ++  G+ PN+V   +++ G     +
Sbjct: 414 MVHHNFVPDAYNYSSLIYAYCRHRQLKEALEVFELMICDGICPNVVTCTILVHGFSNEGL 473

Query: 472 KREAYQILREMRKNGLNPDAVTWRIL 497
             EA+  L ++R+ G+ P+  T+R++
Sbjct: 474 IGEAFLFLDKVRQFGVVPNLCTYRVI 499


>gi|47550658|dbj|BAD20284.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 791

 Score =  198 bits (503), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 141/515 (27%), Positives = 240/515 (46%), Gaps = 42/515 (8%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           +A+  + +M  R   P+VV+Y+++I   C+   MD A +V   M   GV+PN +TY+ ++
Sbjct: 214 KAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSIL 273

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP 131
            G   +   + A   + K+     E + ++ N+     L+D LC+ G   E  +I + M 
Sbjct: 274 HGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNS-----LMDYLCKNGRSTEARKIFDSMT 328

Query: 132 ---------------QGKSVNEEFACGH-MIDSLCRSG-------------------RNH 156
                          QG +        H ++D + R+G                   +  
Sbjct: 329 KRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVD 388

Query: 157 GASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLV 216
            A  V   MR+ GL P++V+Y +++  LCK G    A    E+ I  G  P+   Y  L+
Sbjct: 389 EAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLI 448

Query: 217 EGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQ 276
             LC     +KA +++  ML +     T   N  + + C      E   +   M++   +
Sbjct: 449 HSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVK 508

Query: 277 PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALN 336
           P+VIT +T+I+G+C  G+++EA K+L+ M +     PD VT+ T+I G   V R+ +AL 
Sbjct: 509 PNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGM-KPDCVTYNTLINGYCRVSRMDDALA 567

Query: 337 LLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 396
           L ++ M   G SP I+TYN +L+GLF  RR   AKE++  +   G   + +TY I++ GL
Sbjct: 568 L-FKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGTQLELSTYNIILHGL 626

Query: 397 CESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNI 456
           C++N  DEA R + ++       +   +  MI  L + G+  EA         +G+ PN 
Sbjct: 627 CKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFVAFSSNGLVPNY 686

Query: 457 VCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 491
             Y ++ +      +  E  Q+   M  NG   D+
Sbjct: 687 WTYRLMAENIIGQGLLEELDQLFFSMEDNGCTVDS 721



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 129/515 (25%), Positives = 239/515 (46%), Gaps = 50/515 (9%)

Query: 4   LCGLSRVGEAHKLFF---DMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           LC  +R  EA +L     D +  G  P+VVSYTT+I+G+ + G+ D AY  + EM    +
Sbjct: 168 LCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRI 227

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TYS ++  + + + +++A  ++  + +       +  N   + +++   C     
Sbjct: 228 SPDVVTYSSIIAALCKGQAMDKAMEVLTTMVK-----NGVMPNCMTYNSILHGYCSSEQP 282

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E     + M       +      ++D LC++GR+  A ++   M KRGL P + +Y ++
Sbjct: 283 KEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTL 342

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G    G  +  + LL+  ++ G  P  H + +L+   C  +  EK             
Sbjct: 343 LQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILI---CAYAKQEK------------- 386

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           VD                   E + V   M Q    P+V+T   VI   CK G +++A+ 
Sbjct: 387 VD-------------------EAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAML 427

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
               M+  +   P+ + +T++I  L    +  +A  L+ + M  RG     + +N+++  
Sbjct: 428 YFEQMI-DEGLTPNIIVYTSLIHSLCIFDKWDKAEELILE-MLDRGICLNTIFFNSIIHS 485

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
             +  RV E++++F+ M+ IGV  +  TY+ +IDG C + ++DEA +    +       D
Sbjct: 486 HCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPD 545

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              Y  +I G CR  ++ +A+    E+V SGV+PNI+ YN+++ G         A ++  
Sbjct: 546 CVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYV 605

Query: 481 EMRKNGLNPDAVTWRILDKLHG---NRGNDFGLRI 512
            + K+G   +  T+ I+  LHG   N   D  LR+
Sbjct: 606 GITKSGTQLELSTYNII--LHGLCKNNLTDEALRM 638



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 114/465 (24%), Positives = 211/465 (45%), Gaps = 46/465 (9%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           MD LC   R  EA K+F  M  RG  P++ +Y TL+ GY   G +   + + D M   G+
Sbjct: 308 MDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGI 367

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+   +++L+    +   V+ A ++  K+      +  L+ N   +  ++  LC+ G V
Sbjct: 368 HPDHHVFNILICAYAKQEKVDEAMLVFSKM-----RQHGLNPNVVTYGAVIGILCKSGSV 422

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           ++     E M              +I SLC   +   A  ++  M  RG+  + + +NSI
Sbjct: 423 DDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSI 482

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +H  CK G  + + +L +  ++ G  P+  TY  L++G C    +++A K+L  M S   
Sbjct: 483 IHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFS--- 539

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                              +PD +T NT+ING+C++ R+++AL 
Sbjct: 540 --------------------------------VGMKPDCVTYNTLINGYCRVSRMDDALA 567

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +  +MV+    +P+ +T+  I+ GL +  R   A   LY  + + G    + TYN +L G
Sbjct: 568 LFKEMVSSGV-SPNIITYNIILQGLFHTRRTAAAKE-LYVGITKSGTQLELSTYNIILHG 625

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN--I 418
           L +    +EA  +F  +    +  ++ T+ I+I  L +  + DEAK  +  + + SN  +
Sbjct: 626 LCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLF--VAFSSNGLV 683

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463
            + + Y  M + +   G + E     + + D+G T +    N ++
Sbjct: 684 PNYWTYRLMAENIIGQGLLEELDQLFFSMEDNGCTVDSGMLNFIV 728



 Score =  161 bits (408), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 118/507 (23%), Positives = 231/507 (45%), Gaps = 38/507 (7%)

Query: 26  VPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRG------------ 73
            P V +Y  LI   CR G +D+ +     +   G    ++T++ L++G            
Sbjct: 84  TPTVHTYGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMD 143

Query: 74  -VLR-------TRDVERANVLMFKLWERMKEEEDLSV--------------NNAAFANLV 111
            VLR         DV    +L+  L +  + +E L +              +  ++  ++
Sbjct: 144 IVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVI 203

Query: 112 DSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLT 171
           +   +EG  ++ +    +M   +   +      +I +LC+      A  V+  M K G+ 
Sbjct: 204 NGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVM 263

Query: 172 PSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKV 231
           P+ ++YNSI+HG C       A   L++    G  P   TY  L++ LC      +ARK+
Sbjct: 264 PNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKI 323

Query: 232 LQFMLSKK-DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFC 290
              M  +  + D    C + L+         E+  +L  M++    PD    N +I  + 
Sbjct: 324 FDSMTKRGLEPDIATYCTL-LQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYA 382

Query: 291 KMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG 350
           K  +++EA+ V + M       P+ VT+  +I  L   G + +A+ L ++ M   G +P 
Sbjct: 383 KQEKVDEAMLVFSKMRQHGL-NPNVVTYGAVIGILCKSGSVDDAM-LYFEQMIDEGLTPN 440

Query: 351 IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD 410
           I+ Y +++  L    + ++A+E+   ML  G+  ++  +  +I   C+  ++ E+++ +D
Sbjct: 441 IIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFD 500

Query: 411 DIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLS 470
            +V      +   Y+ +I G C +GK+ EA   L  +   G+ P+ V YN +I+G C++S
Sbjct: 501 LMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVS 560

Query: 471 MKREAYQILREMRKNGLNPDAVTWRIL 497
              +A  + +EM  +G++P+ +T+ I+
Sbjct: 561 RMDDALALFKEMVSSGVSPNIITYNII 587



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 91/329 (27%), Positives = 159/329 (48%), Gaps = 6/329 (1%)

Query: 170 LTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKAR 229
           +TP++ +Y  ++   C+ G     +  L   ++ G+     T+  L++GLC +     A 
Sbjct: 83  VTPTVHTYGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAM 142

Query: 230 K-VLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQ---CQPDVITLNTV 285
             VL+ M     +     C I L+ LC      E L +L  M   +     PDV++  TV
Sbjct: 143 DIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTV 202

Query: 286 INGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQR 345
           INGF K G  ++A    ++M+  +  +PD VT+++II  L     + +A+ +L   M + 
Sbjct: 203 INGFFKEGDSDKAYSTYHEMLDRRI-SPDVVTYSSIIAALCKGQAMDKAMEVL-TTMVKN 260

Query: 346 GYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA 405
           G  P  +TYN++L G     + +EA      M   GV  D  TY  ++D LC++ +  EA
Sbjct: 261 GVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEA 320

Query: 406 KRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDG 465
           ++ +D +       D   Y  +++G    G + E    L  +V +G+ P+   +N++I  
Sbjct: 321 RKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICA 380

Query: 466 ACKLSMKREAYQILREMRKNGLNPDAVTW 494
             K     EA  +  +MR++GLNP+ VT+
Sbjct: 381 YAKQEKVDEAMLVFSKMRQHGLNPNVVTY 409



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 116/230 (50%), Gaps = 2/230 (0%)

Query: 278 DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNL 337
           + IT   ++ G C   R  +A+ ++   +    C PD  + T ++ GL +  R QEAL L
Sbjct: 121 EAITFTPLLKGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALEL 180

Query: 338 LYQVMPQRG--YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG 395
           L+ +   RG   +P +V+Y  V+ G F+    ++A   ++ ML   +  D  TY+ +I  
Sbjct: 181 LHMMADDRGGGSAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAA 240

Query: 396 LCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN 455
           LC+   +D+A      +V    + +   Y +++ G C S +  EA+ FL ++   GV P+
Sbjct: 241 LCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPD 300

Query: 456 IVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
           +V YN ++D  CK     EA +I   M K GL PD  T+  L + +  +G
Sbjct: 301 VVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKG 350


>gi|41152686|dbj|BAD08211.1| hypothetical protein [Oryza sativa Indica Group]
 gi|67906118|dbj|BAE00069.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score =  198 bits (503), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 141/515 (27%), Positives = 247/515 (47%), Gaps = 42/515 (8%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           +A+  + +M  RG +PNVV+Y ++I   C+   MD A +V   M   GV+PN  TY+ +V
Sbjct: 217 KAYGTYHEMLDRGILPNVVTYNSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIV 276

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP 131
            G   +   + A   + K+     E + ++ N+     L+D LC+ G   E  ++ + M 
Sbjct: 277 HGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNS-----LMDYLCKNGRCTEARKMFDSMT 331

Query: 132 ---------------QGKSVNEEFACGH-MIDSLCRSG--RNH----------------- 156
                          QG +        H ++D + R+G   NH                 
Sbjct: 332 KRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVD 391

Query: 157 GASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLV 216
            A  V   MR++GL P  V+Y +++  LCK G    A +  E+ I     P    Y  L+
Sbjct: 392 QAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLI 451

Query: 217 EGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQ 276
             LC     +KA++++  ML +     T   N  + + C      E   +   M++   +
Sbjct: 452 HSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVK 511

Query: 277 PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALN 336
           P++IT +T+I+G+C  G+++EA K+L  MV+     PD VT+ T+I G   + R+++AL 
Sbjct: 512 PNIITYSTLIDGYCLAGKMDEATKLLASMVSVGM-KPDCVTYNTLINGYCKISRMEDAL- 569

Query: 337 LLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 396
           +L++ M   G SP I+TYN +L+GLF+ RR   AKE++  +   G   + +TY I++ GL
Sbjct: 570 VLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGL 629

Query: 397 CESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNI 456
           C++N  DEA R + ++       +   +  MI  L + G+  EA      L  +G+ P++
Sbjct: 630 CKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDV 689

Query: 457 VCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 491
             Y+++ +   +  +  E   +   M +NG   ++
Sbjct: 690 RTYSLMAENLIEQGLLEELDDLFLSMEENGCTANS 724



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 132/514 (25%), Positives = 244/514 (47%), Gaps = 49/514 (9%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGH--VPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVL 61
           LC  +R  EA +L   M   G    P+VVSYTT+I+G+ + G++D AY  + EM   G+L
Sbjct: 172 LCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGIL 231

Query: 62  PNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVN 121
           PN +TY+ ++  + + + +++A  ++  + +       +  N   + ++V   C  G   
Sbjct: 232 PNVVTYNSIIAALCKAQAMDKAMEVLTSMVK-----NGVMPNCRTYNSIVHGYCSSGQPK 286

Query: 122 EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
           E     + M       +      ++D LC++GR   A ++   M KRGL P + +Y +++
Sbjct: 287 EAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLL 346

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
            G    G  +  + LL+  ++ G  P+ + + +L+   C  +   K  KV Q ML     
Sbjct: 347 QGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILI---CAYA---KQGKVDQAML----- 395

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
                                   V   M Q    PD +T  TVI   CK GR+E+A++ 
Sbjct: 396 ------------------------VFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRY 431

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
              M+  +  +P  + + ++I  L    +  +A  L+ + M  RG     + +N+++   
Sbjct: 432 FEQMIDERL-SPGNIVYNSLIHSLCIFDKWDKAKELILE-MLDRGICLDTIFFNSIIDSH 489

Query: 362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
            +  RV E++++F+ M+ IGV  +  TY+ +IDG C + ++DEA +    +V      D 
Sbjct: 490 CKEGRVIESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDC 549

Query: 422 YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
             Y  +I G C+  ++ +A+    E+  SGV+P+I+ YN+++ G  +      A ++   
Sbjct: 550 VTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVG 609

Query: 482 MRKNGLNPDAVTWRILDKLHG---NRGNDFGLRI 512
           + ++G   +  T+ I+  LHG   N   D  LR+
Sbjct: 610 ITESGTQLELSTYNII--LHGLCKNNLTDEALRM 641



 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 117/463 (25%), Positives = 206/463 (44%), Gaps = 42/463 (9%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           MD LC   R  EA K+F  M  RG  P + +Y TL+ GY   G +   + + D M   G+
Sbjct: 311 MDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGI 370

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN   +S+L+    +   V++A ++  K+      ++ L+ +   +  ++  LC+ G V
Sbjct: 371 HPNHYVFSILICAYAKQGKVDQAMLVFSKM-----RQQGLNPDTVTYGTVIGILCKSGRV 425

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +  R  E M   +          +I SLC   +   A  ++  M  RG+    + +NSI
Sbjct: 426 EDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSI 485

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +   CK G  + + +L +  ++ G  P+  TY  L++G C    +++A K+L  M+S   
Sbjct: 486 IDSHCKEGRVIESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGKMDEATKLLASMVS--- 542

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                              +PD +T NT+ING+CK+ R+E+AL 
Sbjct: 543 --------------------------------VGMKPDCVTYNTLINGYCKISRMEDALV 570

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +  +M +    +PD +T+  I+ GL    R   A  L Y  + + G    + TYN +L G
Sbjct: 571 LFREMESSGV-SPDIITYNIILQGLFQTRRTAAAKEL-YVGITESGTQLELSTYNIILHG 628

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L +    +EA  +F  +    +  ++ T+ I+I  L +  + DEAK  +  +     + D
Sbjct: 629 LCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPD 688

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463
              Y+ M + L   G + E       + ++G T N    N ++
Sbjct: 689 VRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIV 731



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 134/532 (25%), Positives = 230/532 (43%), Gaps = 59/532 (11%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCG---VLPNSLTYS 68
           +A  +F ++  RG   ++      +    R      A   ++ M   G   V PN  TY 
Sbjct: 37  DARHVFDELLRRGRGASIYGLNCALADVARHSPA-AAVSRYNRMARAGADEVTPNLCTYG 95

Query: 69  VLV-----RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           +L+      G L        NV+          ++   V+  AF  L+  LC +   ++ 
Sbjct: 96  ILIGSCCCAGRLDLGFAALGNVI----------KKGFRVDAIAFTPLLKGLCADKRTSDA 145

Query: 124 FRIA-EDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRG--LTPSLVSYNSI 180
             I    M Q   +   F+   ++  LC   R+  A  ++ +M   G    P +VSY ++
Sbjct: 146 MDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTV 205

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++G  K G   +AY    E +  G LP+  TY  ++  LC    ++KA +VL  M+    
Sbjct: 206 INGFFKEGDLDKAYGTYHEMLDRGILPNVVTYNSIIAALCKAQAMDKAMEVLTSMVKNGV 265

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           +   R  N  +   C    P E +  L  M     +PDV+T N++++  CK GR  EA K
Sbjct: 266 MPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARK 325

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           + + M   +   P+  T+ T++ G    G + E   LL  +M + G  P    ++ ++  
Sbjct: 326 MFDSMTK-RGLKPEITTYGTLLQGYATKGALVEMHGLL-DLMVRNGIHPNHYVFSILICA 383

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD---------- 410
             +  +V++A  VF+ M   G+  D+ TY  VI  LC+S ++++A R+++          
Sbjct: 384 YAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPG 443

Query: 411 DIVWPSNIH-------------------------DNYVYAAMIKGLCRSGKIHEAVHFLY 445
           +IV+ S IH                         D   + ++I   C+ G++ E+     
Sbjct: 444 NIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFD 503

Query: 446 ELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            +V  GV PNI+ Y+ +IDG C      EA ++L  M   G+ PD VT+  L
Sbjct: 504 LMVRIGVKPNIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTL 555



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 119/230 (51%), Gaps = 3/230 (1%)

Query: 278 DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNL 337
           D I    ++ G C   R  +A+ ++   +    C P+  ++  ++ GL +  R QEAL L
Sbjct: 125 DAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALEL 184

Query: 338 LYQVMPQRGYS--PGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG 395
           L Q+MP  G    P +V+Y  V+ G F+   +++A   ++ ML  G++ +  TY  +I  
Sbjct: 185 L-QMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYNSIIAA 243

Query: 396 LCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN 455
           LC++  +D+A      +V    + +   Y +++ G C SG+  EA+ FL ++   GV P+
Sbjct: 244 LCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPD 303

Query: 456 IVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
           +V YN ++D  CK     EA ++   M K GL P+  T+  L + +  +G
Sbjct: 304 VVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKG 353



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 110/239 (46%), Gaps = 6/239 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C   ++ EA KL   M S G  P+ V+Y TLI+GYC+   M+ A  +F EM   GV
Sbjct: 521 IDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGV 580

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TY+++++G+ +TR    A  L   + E   + E LS  N     ++  LC+    
Sbjct: 581 SPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLE-LSTYNI----ILHGLCKNNLT 635

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E  R+ +++       E      MI +L + GRN  A  +   +   GL P + +Y+ +
Sbjct: 636 DEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLM 695

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
              L + G       L     + G   +      +V  L    D+ +A   L FM+ +K
Sbjct: 696 AENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRAGTYL-FMIDEK 753


>gi|75191658|sp|Q9M9X9.1|PPR18_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g06710, mitochondrial; Flags: Precursor
 gi|7523709|gb|AAF63148.1|AC011001_18 Hypothetical protein [Arabidopsis thaliana]
          Length = 987

 Score =  198 bits (503), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 139/531 (26%), Positives = 246/531 (46%), Gaps = 60/531 (11%)

Query: 4   LCGL---SRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           LCG     ++G   ++   M   G  P+   + +L+H YC +G+   AYK+  +M  CG 
Sbjct: 344 LCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGH 403

Query: 61  LPNSLTYSVLVRGVLRTRD-----------------------VERANVLMFK--LWERMK 95
           +P  + Y++L+  +   +D                       + + NV  F   L    K
Sbjct: 404 MPGYVVYNILIGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGK 463

Query: 96  EEEDLSV-----------NNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGH 144
            E+  SV           + + ++ +++ LC    +   F + E+M +G  V + +    
Sbjct: 464 YEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTI 523

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
           M+DS C++G    A +    MR+ G TP++V+Y +++H   K      A +L E  +  G
Sbjct: 524 MVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEG 583

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL 264
            LP+  TY  L++G C    +EKA ++ + M   KDV      ++Y +      + +E  
Sbjct: 584 CLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDV---DMYFKQY---DDNSE-- 635

Query: 265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 324
                      +P+V+T   +++GFCK  R+EEA K+L D ++ + C P+ + +  +I G
Sbjct: 636 -----------RPNVVTYGALLDGFCKSHRVEEARKLL-DAMSMEGCEPNQIVYDALIDG 683

Query: 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 384
           L  VG++ EA  +  + M + G+   + TY++++   F+++R + A +V + ML      
Sbjct: 684 LCKVGKLDEAQEVKTE-MSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAP 742

Query: 385 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFL 444
           +   Y  +IDGLC+  + DEA +    +       +   Y AMI G    GKI   +  L
Sbjct: 743 NVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELL 802

Query: 445 YELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWR 495
             +   GV PN V Y V+ID  CK      A+ +L EM++         +R
Sbjct: 803 ERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYR 853



 Score =  181 bits (460), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 142/502 (28%), Positives = 233/502 (46%), Gaps = 37/502 (7%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC  S++  A  LF +MK  G V +V +YT ++  +C+ G ++ A K F+EMR  G 
Sbjct: 490 LNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGC 549

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +TY+ L+   L+ + V  AN    +L+E M  E  L  N   ++ L+D  C+ G V
Sbjct: 550 TPNVVTYTALIHAYLKAKKVSYAN----ELFETMLSEGCLP-NIVTYSALIDGHCKAGQV 604

Query: 121 NEVFRIAEDMPQGKSV------------NEE----FACGHMIDSLCRSGRNHGASRVVYV 164
            +  +I E M   K V            N E       G ++D  C+S R   A +++  
Sbjct: 605 EKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDA 664

Query: 165 MRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESD 224
           M   G  P+ + Y++++ GLCK G    A ++  E  + G+  + +TY  L++       
Sbjct: 665 MSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKR 724

Query: 225 LEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNT 284
            + A KVL  ML         I    +  LC +    E   ++  M +  CQP+V+T   
Sbjct: 725 QDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTA 784

Query: 285 VINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ 344
           +I+GF  +G+IE  L++L  M   K  AP+ VT+  +I      G +  A NLL + M Q
Sbjct: 785 MIDGFGMIGKIETCLELLERM-GSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEE-MKQ 842

Query: 345 RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTT-----YAIVIDGLCES 399
             +      Y  V+ G  +     E  E    +  IG   D T      Y ++ID L ++
Sbjct: 843 THWPTHTAGYRKVIEGFNK-----EFIESLGLLDEIG--QDDTAPFLSVYRLLIDNLIKA 895

Query: 400 NQLDEAKRFWDDIVWPSNIHDNY--VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIV 457
            +L+ A R  +++   S    +Y   Y ++I+ LC + K+  A     E+   GV P + 
Sbjct: 896 QRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQ 955

Query: 458 CYNVVIDGACKLSMKREAYQIL 479
            +  +I G  + S   EA  +L
Sbjct: 956 SFCSLIKGLFRNSKISEALLLL 977



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 139/552 (25%), Positives = 240/552 (43%), Gaps = 70/552 (12%)

Query: 6   GLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSL 65
            L +VG+  +    +++   VP+ V YT LI G C     + A    + MR    LPN +
Sbjct: 279 SLCKVGKWREALTLVETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVV 338

Query: 66  TYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFR 125
           TYS L+ G L  + + R   ++      M   E    +   F +LV + C  G  +  ++
Sbjct: 339 TYSTLLCGCLNKKQLGRCKRVL-----NMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYK 393

Query: 126 IAEDMPQ--------------------------------GKSVNEEFACGHMIDS----- 148
           + + M +                                 K+ +E  A G +++      
Sbjct: 394 LLKKMVKCGHMPGYVVYNILIGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSS 453

Query: 149 ----LCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
               LC +G+   A  V+  M  +G  P   +Y+ +++ LC       A+ L EE  + G
Sbjct: 454 FTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGG 513

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFM----LSKKDVDRTRICNIYLRALCLIKNP 260
            +   +TY ++V+  C    +E+ARK    M     +   V  T + + YL+A   +   
Sbjct: 514 LVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAK-KVSYA 572

Query: 261 TELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCA-------- 312
            EL      ML   C P+++T + +I+G CK G++E+A ++   M   K           
Sbjct: 573 NELFET---MLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQ 629

Query: 313 -------PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLR 365
                  P+ VT+  ++ G     R++EA  LL   M   G  P  + Y+A++ GL ++ 
Sbjct: 630 YDDNSERPNVVTYGALLDGFCKSHRVEEARKLL-DAMSMEGCEPNQIVYDALIDGLCKVG 688

Query: 366 RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYA 425
           +++EA+EV   M   G  A   TY+ +ID   +  + D A +    ++  S   +  +Y 
Sbjct: 689 KLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYT 748

Query: 426 AMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN 485
            MI GLC+ GK  EA   +  + + G  PN+V Y  +IDG   +       ++L  M   
Sbjct: 749 EMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSK 808

Query: 486 GLNPDAVTWRIL 497
           G+ P+ VT+R+L
Sbjct: 809 GVAPNYVTYRVL 820



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 129/534 (24%), Positives = 231/534 (43%), Gaps = 64/534 (11%)

Query: 35  LIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRT----------RDVERAN 84
           L+  +CR G   +A +    ++     P+  TY+ L++  L+           R++  AN
Sbjct: 206 LVRKHCRNGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMSLAN 265

Query: 85  VLM--FKL------------WER---MKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIA 127
           + M  F L            W     + E E+   +   +  L+  LC      E     
Sbjct: 266 LRMDGFTLRCFAYSLCKVGKWREALTLVETENFVPDTVFYTKLISGLCEASLFEEAMDFL 325

Query: 128 EDMPQGKSVN-----EEFACGHMIDSLCRSGRNHG-ASRVVYVMRKRGLTPSLVSYNSIV 181
             M     +          CG      C + +  G   RV+ +M   G  PS   +NS+V
Sbjct: 326 NRMRATSCLPNVVTYSTLLCG------CLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLV 379

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESD------LEKARKVLQFM 235
           H  C  G    AY+LL++ ++ G++P    Y +L+  +CG+ D      L+ A K    M
Sbjct: 380 HAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNCDLLDLAEKAYSEM 439

Query: 236 LSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 295
           L+   V      + + R LC      +  +V+  M+     PD  T + V+N  C   ++
Sbjct: 440 LAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKM 499

Query: 296 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN 355
           E A  +  +M  G   A D  T+T ++      G I++A    +  M + G +P +VTY 
Sbjct: 500 ELAFLLFEEMKRGGLVA-DVYTYTIMVDSFCKAGLIEQARK-WFNEMREVGCTPNVVTYT 557

Query: 356 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP 415
           A++    + ++V  A E+F  ML  G + +  TY+ +IDG C++ Q+++A + ++ +   
Sbjct: 558 ALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGS 617

Query: 416 SNIHD---------------NYV-YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCY 459
            ++ D               N V Y A++ G C+S ++ EA   L  +   G  PN + Y
Sbjct: 618 KDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVY 677

Query: 460 NVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW-RILDKLHGNRGNDFGLRI 512
           + +IDG CK+    EA ++  EM ++G      T+  ++D+    +  D   ++
Sbjct: 678 DALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKV 731



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 117/477 (24%), Positives = 197/477 (41%), Gaps = 56/477 (11%)

Query: 56  RHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLC 115
           R  G    +  Y+ LV  ++R  D +     + ++ +  KE          F   ++ L 
Sbjct: 157 RQIGYKHTAPVYNALVDLIVRDDDEKVPEEFLQQIRDDDKE---------VFGEFLNVLV 207

Query: 116 REGYVNEVFRIA-EDMPQGKSVN-----EEFACGHMIDSLCRSGRNHGASRVVYVMRKRG 169
           R+   N  F IA E++ + K          + C  +I +  ++ R   AS +   M    
Sbjct: 208 RKHCRNGSFSIALEELGRLKDFRFRPSRSTYNC--LIQAFLKADRLDSASLIHREMSLAN 265

Query: 170 LTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKAR 229
           L     +     + LCK G    A  L+E      ++P    Y  L+ GLC  S  E+A 
Sbjct: 266 LRMDGFTLRCFAYSLCKVGKWREALTLVETE---NFVPDTVFYTKLISGLCEASLFEEAM 322

Query: 230 KVLQFMLSKKDVDRTRIC--NI--YLRALCLIKNPTEL---LNVLVFMLQTQCQPDVITL 282
             L  M       R   C  N+  Y   LC   N  +L     VL  M+   C P     
Sbjct: 323 DFLNRM-------RATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIF 375

Query: 283 NTVINGFCKMGRIEEALKVLNDMVAGKFCA--PDAVTFTTIIFGLLNVGRI---QEALNL 337
           N++++ +C  G    A K+L  MV    C   P  V +  +I      G I   +++LN 
Sbjct: 376 NSLVHAYCTSGDHSYAYKLLKKMVK---CGHMPGYVVYNILI------GSICGDKDSLNC 426

Query: 338 LYQVMPQRGYS----PGIV----TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTY 389
               + ++ YS     G+V      ++  R L    + E+A  V   M+G G + D++TY
Sbjct: 427 DLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTY 486

Query: 390 AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449
           + V++ LC +++++ A   ++++     + D Y Y  M+   C++G I +A  +  E+ +
Sbjct: 487 SKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMRE 546

Query: 450 SGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
            G TPN+V Y  +I    K      A ++   M   G  P+ VT+  L   H   G 
Sbjct: 547 VGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQ 603



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 118/239 (49%), Gaps = 13/239 (5%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC + +  EA+KL   M+ +G  PNVV+YT +I G+   G+++   ++ + M   GV
Sbjct: 751 IDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGV 810

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +TY VL+    +   ++ A+     L E MK+      + A +  +++   +E   
Sbjct: 811 APNYVTYRVLIDHCCKNGALDVAH----NLLEEMKQTH-WPTHTAGYRKVIEGFNKE--F 863

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLV----S 176
            E   + +++ Q  +         +ID+L ++ R   A R++  +     + +LV    +
Sbjct: 864 IESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVAT--FSATLVDYSST 921

Query: 177 YNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM 235
           YNS++  LC       A+QL  E  + G +P   ++  L++GL   S + +A  +L F+
Sbjct: 922 YNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRNSKISEALLLLDFI 980


>gi|334182346|ref|NP_172156.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332189906|gb|AEE28027.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 997

 Score =  198 bits (503), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 139/531 (26%), Positives = 246/531 (46%), Gaps = 60/531 (11%)

Query: 4   LCGL---SRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           LCG     ++G   ++   M   G  P+   + +L+H YC +G+   AYK+  +M  CG 
Sbjct: 344 LCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGH 403

Query: 61  LPNSLTYSVLVRGVLRTRD-----------------------VERANVLMFK--LWERMK 95
           +P  + Y++L+  +   +D                       + + NV  F   L    K
Sbjct: 404 MPGYVVYNILIGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGK 463

Query: 96  EEEDLSV-----------NNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGH 144
            E+  SV           + + ++ +++ LC    +   F + E+M +G  V + +    
Sbjct: 464 YEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTI 523

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
           M+DS C++G    A +    MR+ G TP++V+Y +++H   K      A +L E  +  G
Sbjct: 524 MVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEG 583

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL 264
            LP+  TY  L++G C    +EKA ++ + M   KDV      ++Y +      + +E  
Sbjct: 584 CLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDV---DMYFKQY---DDNSE-- 635

Query: 265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 324
                      +P+V+T   +++GFCK  R+EEA K+L D ++ + C P+ + +  +I G
Sbjct: 636 -----------RPNVVTYGALLDGFCKSHRVEEARKLL-DAMSMEGCEPNQIVYDALIDG 683

Query: 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 384
           L  VG++ EA  +  + M + G+   + TY++++   F+++R + A +V + ML      
Sbjct: 684 LCKVGKLDEAQEVKTE-MSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAP 742

Query: 385 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFL 444
           +   Y  +IDGLC+  + DEA +    +       +   Y AMI G    GKI   +  L
Sbjct: 743 NVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELL 802

Query: 445 YELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWR 495
             +   GV PN V Y V+ID  CK      A+ +L EM++         +R
Sbjct: 803 ERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYR 853



 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 142/502 (28%), Positives = 233/502 (46%), Gaps = 37/502 (7%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC  S++  A  LF +MK  G V +V +YT ++  +C+ G ++ A K F+EMR  G 
Sbjct: 490 LNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGC 549

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +TY+ L+   L+ + V  AN    +L+E M  E  L  N   ++ L+D  C+ G V
Sbjct: 550 TPNVVTYTALIHAYLKAKKVSYAN----ELFETMLSEGCLP-NIVTYSALIDGHCKAGQV 604

Query: 121 NEVFRIAEDMPQGKSV------------NEE----FACGHMIDSLCRSGRNHGASRVVYV 164
            +  +I E M   K V            N E       G ++D  C+S R   A +++  
Sbjct: 605 EKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDA 664

Query: 165 MRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESD 224
           M   G  P+ + Y++++ GLCK G    A ++  E  + G+  + +TY  L++       
Sbjct: 665 MSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKR 724

Query: 225 LEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNT 284
            + A KVL  ML         I    +  LC +    E   ++  M +  CQP+V+T   
Sbjct: 725 QDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTA 784

Query: 285 VINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ 344
           +I+GF  +G+IE  L++L  M   K  AP+ VT+  +I      G +  A NLL + M Q
Sbjct: 785 MIDGFGMIGKIETCLELLERM-GSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEE-MKQ 842

Query: 345 RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTT-----YAIVIDGLCES 399
             +      Y  V+ G  +     E  E    +  IG   D T      Y ++ID L ++
Sbjct: 843 THWPTHTAGYRKVIEGFNK-----EFIESLGLLDEIG--QDDTAPFLSVYRLLIDNLIKA 895

Query: 400 NQLDEAKRFWDDIVWPSNIHDNY--VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIV 457
            +L+ A R  +++   S    +Y   Y ++I+ LC + K+  A     E+   GV P + 
Sbjct: 896 QRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQ 955

Query: 458 CYNVVIDGACKLSMKREAYQIL 479
            +  +I G  + S   EA  +L
Sbjct: 956 SFCSLIKGLFRNSKISEALLLL 977



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 139/552 (25%), Positives = 240/552 (43%), Gaps = 70/552 (12%)

Query: 6   GLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSL 65
            L +VG+  +    +++   VP+ V YT LI G C     + A    + MR    LPN +
Sbjct: 279 SLCKVGKWREALTLVETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVV 338

Query: 66  TYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFR 125
           TYS L+ G L  + + R   ++      M   E    +   F +LV + C  G  +  ++
Sbjct: 339 TYSTLLCGCLNKKQLGRCKRVL-----NMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYK 393

Query: 126 IAEDMPQ--------------------------------GKSVNEEFACGHMIDS----- 148
           + + M +                                 K+ +E  A G +++      
Sbjct: 394 LLKKMVKCGHMPGYVVYNILIGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSS 453

Query: 149 ----LCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
               LC +G+   A  V+  M  +G  P   +Y+ +++ LC       A+ L EE  + G
Sbjct: 454 FTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGG 513

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFM----LSKKDVDRTRICNIYLRALCLIKNP 260
            +   +TY ++V+  C    +E+ARK    M     +   V  T + + YL+A   +   
Sbjct: 514 LVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAK-KVSYA 572

Query: 261 TELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCA-------- 312
            EL      ML   C P+++T + +I+G CK G++E+A ++   M   K           
Sbjct: 573 NELFET---MLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQ 629

Query: 313 -------PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLR 365
                  P+ VT+  ++ G     R++EA  LL   M   G  P  + Y+A++ GL ++ 
Sbjct: 630 YDDNSERPNVVTYGALLDGFCKSHRVEEARKLL-DAMSMEGCEPNQIVYDALIDGLCKVG 688

Query: 366 RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYA 425
           +++EA+EV   M   G  A   TY+ +ID   +  + D A +    ++  S   +  +Y 
Sbjct: 689 KLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYT 748

Query: 426 AMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN 485
            MI GLC+ GK  EA   +  + + G  PN+V Y  +IDG   +       ++L  M   
Sbjct: 749 EMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSK 808

Query: 486 GLNPDAVTWRIL 497
           G+ P+ VT+R+L
Sbjct: 809 GVAPNYVTYRVL 820



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 129/534 (24%), Positives = 231/534 (43%), Gaps = 64/534 (11%)

Query: 35  LIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRT----------RDVERAN 84
           L+  +CR G   +A +    ++     P+  TY+ L++  L+           R++  AN
Sbjct: 206 LVRKHCRNGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMSLAN 265

Query: 85  VLM--FKL------------WER---MKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIA 127
           + M  F L            W     + E E+   +   +  L+  LC      E     
Sbjct: 266 LRMDGFTLRCFAYSLCKVGKWREALTLVETENFVPDTVFYTKLISGLCEASLFEEAMDFL 325

Query: 128 EDMPQGKSVN-----EEFACGHMIDSLCRSGRNHG-ASRVVYVMRKRGLTPSLVSYNSIV 181
             M     +          CG      C + +  G   RV+ +M   G  PS   +NS+V
Sbjct: 326 NRMRATSCLPNVVTYSTLLCG------CLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLV 379

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESD------LEKARKVLQFM 235
           H  C  G    AY+LL++ ++ G++P    Y +L+  +CG+ D      L+ A K    M
Sbjct: 380 HAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNCDLLDLAEKAYSEM 439

Query: 236 LSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 295
           L+   V      + + R LC      +  +V+  M+     PD  T + V+N  C   ++
Sbjct: 440 LAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKM 499

Query: 296 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN 355
           E A  +  +M  G   A D  T+T ++      G I++A    +  M + G +P +VTY 
Sbjct: 500 ELAFLLFEEMKRGGLVA-DVYTYTIMVDSFCKAGLIEQARK-WFNEMREVGCTPNVVTYT 557

Query: 356 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP 415
           A++    + ++V  A E+F  ML  G + +  TY+ +IDG C++ Q+++A + ++ +   
Sbjct: 558 ALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGS 617

Query: 416 SNIHD---------------NYV-YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCY 459
            ++ D               N V Y A++ G C+S ++ EA   L  +   G  PN + Y
Sbjct: 618 KDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVY 677

Query: 460 NVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW-RILDKLHGNRGNDFGLRI 512
           + +IDG CK+    EA ++  EM ++G      T+  ++D+    +  D   ++
Sbjct: 678 DALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKV 731



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 115/474 (24%), Positives = 196/474 (41%), Gaps = 50/474 (10%)

Query: 56  RHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLC 115
           R  G    +  Y+ LV  ++R  D +     + ++ +  KE          F   ++ L 
Sbjct: 157 RQIGYKHTAPVYNALVDLIVRDDDEKVPEEFLQQIRDDDKE---------VFGEFLNVLV 207

Query: 116 REGYVNEVFRIA-EDMPQGKSVN-----EEFACGHMIDSLCRSGRNHGASRVVYVMRKRG 169
           R+   N  F IA E++ + K          + C  +I +  ++ R   AS +   M    
Sbjct: 208 RKHCRNGSFSIALEELGRLKDFRFRPSRSTYNC--LIQAFLKADRLDSASLIHREMSLAN 265

Query: 170 LTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKAR 229
           L     +     + LCK G    A  L+E      ++P    Y  L+ GLC  S  E+A 
Sbjct: 266 LRMDGFTLRCFAYSLCKVGKWREALTLVETE---NFVPDTVFYTKLISGLCEASLFEEAM 322

Query: 230 KVLQFMLSKKDVDRTRIC--NI--YLRALCLIKNPTEL---LNVLVFMLQTQCQPDVITL 282
             L  M       R   C  N+  Y   LC   N  +L     VL  M+   C P     
Sbjct: 323 DFLNRM-------RATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIF 375

Query: 283 NTVINGFCKMGRIEEALKVLNDMVAGKFCA--PDAVTFTTIIFGLLNVGRIQEALNLLYQ 340
           N++++ +C  G    A K+L  MV    C   P  V +  +I  +      +++LN    
Sbjct: 376 NSLVHAYCTSGDHSYAYKLLKKMVK---CGHMPGYVVYNILIGSICG---DKDSLNCDLL 429

Query: 341 VMPQRGYS----PGIV----TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIV 392
            + ++ YS     G+V      ++  R L    + E+A  V   M+G G + D++TY+ V
Sbjct: 430 DLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKV 489

Query: 393 IDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGV 452
           ++ LC +++++ A   ++++     + D Y Y  M+   C++G I +A  +  E+ + G 
Sbjct: 490 LNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGC 549

Query: 453 TPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           TPN+V Y  +I    K      A ++   M   G  P+ VT+  L   H   G 
Sbjct: 550 TPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQ 603



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 119/239 (49%), Gaps = 13/239 (5%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC + +  EA+KL   M+ +G  PNVV+YT +I G+   G+++   ++ + M   GV
Sbjct: 751 IDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGV 810

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +TY VL+    +   ++ A+ L+    E MK+      + A +  +++   +E   
Sbjct: 811 APNYVTYRVLIDHCCKNGALDVAHNLL----EEMKQTH-WPTHTAGYRKVIEGFNKE--F 863

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLV----S 176
            E   + +++ Q  +         +ID+L ++ R   A R++  +     + +LV    +
Sbjct: 864 IESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVAT--FSATLVDYSST 921

Query: 177 YNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM 235
           YNS++  LC       A+QL  E  + G +P   ++  L++GL   S + +A  +L F+
Sbjct: 922 YNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRNSKISEALLLLDFI 980


>gi|224132422|ref|XP_002328265.1| predicted protein [Populus trichocarpa]
 gi|222837780|gb|EEE76145.1| predicted protein [Populus trichocarpa]
          Length = 742

 Score =  197 bits (502), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 139/500 (27%), Positives = 247/500 (49%), Gaps = 38/500 (7%)

Query: 27  PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVL 86
           P++  Y  L+    + G +D    +  +M   GV P + T++VL+  +  +  ++ A  L
Sbjct: 19  PSIYLYNVLLRSCTKEGRVDCVSWLCKDMVASGVSPETYTFNVLIGLLCDSGCLDDAREL 78

Query: 87  MFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMI 146
             K+ E+  E      N  +F  LV   CR G+ ++   +  +M +      +     +I
Sbjct: 79  FDKMPEKGCEP-----NEYSFGILVRGYCRAGFTSKGLELLGEMRRLGFSPNKVVYNTLI 133

Query: 147 DSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL 206
            S C+ G+   A ++V  MRK GL+P +V++N+ +  LC  G  + A ++  + +Q   +
Sbjct: 134 SSFCKEGKTDDAEKLVDEMRKDGLSPDVVTFNARISALCSSGKVLEASRIFRD-MQIDEV 192

Query: 207 -----PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPT 261
                P+  TY +++ G C E  LE+AR + + M   +++      NI+L  L  I    
Sbjct: 193 LGLPQPNIITYNLMLGGFCKEGMLEEARALFEKMKVSENLMNRESYNIWLLGLVRIGKLL 252

Query: 262 ELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTI 321
           E   VL  M+    +P+V + N V++G CK G + +A ++L  ++      PD VT+TT+
Sbjct: 253 EAQLVLKEMVDMGMEPNVYSYNIVMDGLCKNGVLFDA-RMLMRLMTSSGVLPDTVTYTTL 311

Query: 322 IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG 381
           + G  + G++ EA N+L ++M + G SP   T N +L  L++  R+ EA+E+   M   G
Sbjct: 312 LHGYCHTGKVSEANNVLREMM-RDGCSPNNYTCNILLYSLWKEGRISEAEELLQKMNEKG 370

Query: 382 VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP------SNIHDNYV------------ 423
            V D+ T  IVIDGLC + +LD+A    + + W        N+ ++Y+            
Sbjct: 371 YVIDTVTCNIVIDGLCNNGKLDKAIEIVNGM-WTHGSAALGNLGNSYIGLVDDSDSRKKC 429

Query: 424 ------YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQ 477
                 Y+ +I GLC++G++ EA     E++   + P+   Y+V I   CK      A++
Sbjct: 430 MPDLISYSTIISGLCKAGRVGEAKKKFIEMMGKNLQPDSAIYDVFIHSFCKEGKISSAFR 489

Query: 478 ILREMRKNGLNPDAVTWRIL 497
           +L++M K G N    T+  L
Sbjct: 490 VLKDMEKKGCNKTLQTYNSL 509



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 139/526 (26%), Positives = 235/526 (44%), Gaps = 40/526 (7%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC    + +A +LF  M  +G  PN  S+  L+ GYCR G      ++  EMR  G  PN
Sbjct: 66  LCDSGCLDDARELFDKMPEKGCEPNEYSFGILVRGYCRAGFTSKGLELLGEMRRLGFSPN 125

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            + Y+ L+    +    + A     KL + M+ ++ LS +   F   + +LC  G V E 
Sbjct: 126 KVVYNTLISSFCKEGKTDDAE----KLVDEMR-KDGLSPDVVTFNARISALCSSGKVLEA 180

Query: 124 FRIAEDM--------PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLV 175
            RI  DM        PQ   +        M+   C+ G    A  +   M+      +  
Sbjct: 181 SRIFRDMQIDEVLGLPQPNIITYNL----MLGGFCKEGMLEEARALFEKMKVSENLMNRE 236

Query: 176 SYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM 235
           SYN  + GL + G  + A  +L+E +  G  P+ ++Y ++++GLC    L  AR +++ M
Sbjct: 237 SYNIWLLGLVRIGKLLEAQLVLKEMVDMGMEPNVYSYNIVMDGLCKNGVLFDARMLMRLM 296

Query: 236 LSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 295
            S   +  T      L   C     +E  NVL  M++  C P+  T N ++    K GRI
Sbjct: 297 TSSGVLPDTVTYTTLLHGYCHTGKVSEANNVLREMMRDGCSPNNYTCNILLYSLWKEGRI 356

Query: 296 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYS------- 348
            EA ++L  M    +   D VT   +I GL N G++ +A+ ++  +      +       
Sbjct: 357 SEAEELLQKMNEKGYVI-DTVTCNIVIDGLCNNGKLDKAIEIVNGMWTHGSAALGNLGNS 415

Query: 349 ---------------PGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVI 393
                          P +++Y+ ++ GL +  RV EAK+ F  M+G  +  DS  Y + I
Sbjct: 416 YIGLVDDSDSRKKCMPDLISYSTIISGLCKAGRVGEAKKKFIEMMGKNLQPDSAIYDVFI 475

Query: 394 DGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVT 453
              C+  ++  A R   D+           Y ++I GL    +I E    + E+ + GV+
Sbjct: 476 HSFCKEGKISSAFRVLKDMEKKGCNKTLQTYNSLIMGLGSKNQIFEIYGLIDEMRERGVS 535

Query: 454 PNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
           P++  YN V+   C+    ++A  +L EM + G++P+  ++ IL K
Sbjct: 536 PDVSIYNNVLSSLCEGGRVKDAPSVLDEMLQKGISPNISSFSILIK 581



 Score =  184 bits (467), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 140/503 (27%), Positives = 241/503 (47%), Gaps = 34/503 (6%)

Query: 19  DMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTR 78
           DM + G  P   ++  LI   C +G +D A ++FD+M   G  PN  ++ +LVRG  R  
Sbjct: 46  DMVASGVSPETYTFNVLIGLLCDSGCLDDARELFDKMPEKGCEPNEYSFGILVRGYCRAG 105

Query: 79  DVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNE 138
              +   L+ ++  R+      S N   +  L+ S C+EG  ++  ++ ++M +     +
Sbjct: 106 FTSKGLELLGEM-RRL----GFSPNKVVYNTLISSFCKEGKTDDAEKLVDEMRKDGLSPD 160

Query: 139 EFACGHMIDSLCRSGRNHGASRVVYVMRKR---GLT-PSLVSYNSIVHGLCKHGGCMRAY 194
                  I +LC SG+   ASR+   M+     GL  P++++YN ++ G CK G    A 
Sbjct: 161 VVTFNARISALCSSGKVLEASRIFRDMQIDEVLGLPQPNIITYNLMLGGFCKEGMLEEAR 220

Query: 195 QLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRAL 254
            L E+      L +  +Y + + GL     L +A+ VL+ M+           NI +  L
Sbjct: 221 ALFEKMKVSENLMNRESYNIWLLGLVRIGKLLEAQLVLKEMVDMGMEPNVYSYNIVMDGL 280

Query: 255 CLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPD 314
           C      +   ++  M  +   PD +T  T+++G+C  G++ EA  VL +M+    C+P+
Sbjct: 281 CKNGVLFDARMLMRLMTSSGVLPDTVTYTTLLHGYCHTGKVSEANNVLREMMRDG-CSPN 339

Query: 315 AVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVF 374
             T   +++ L   GRI EA  LL Q M ++GY    VT N V+ GL    ++++A E+ 
Sbjct: 340 NYTCNILLYSLWKEGRISEAEELL-QKMNEKGYVIDTVTCNIVIDGLCNNGKLDKAIEIV 398

Query: 375 NCM----------LG---IGVVADSTT----------YAIVIDGLCESNQLDEAKRFWDD 411
           N M          LG   IG+V DS +          Y+ +I GLC++ ++ EAK+ + +
Sbjct: 399 NGMWTHGSAALGNLGNSYIGLVDDSDSRKKCMPDLISYSTIISGLCKAGRVGEAKKKFIE 458

Query: 412 IVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSM 471
           ++  +   D+ +Y   I   C+ GKI  A   L ++   G    +  YN +I G    + 
Sbjct: 459 MMGKNLQPDSAIYDVFIHSFCKEGKISSAFRVLKDMEKKGCNKTLQTYNSLIMGLGSKNQ 518

Query: 472 KREAYQILREMRKNGLNPDAVTW 494
             E Y ++ EMR+ G++PD   +
Sbjct: 519 IFEIYGLIDEMRERGVSPDVSIY 541



 Score =  168 bits (425), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 145/598 (24%), Positives = 261/598 (43%), Gaps = 106/598 (17%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +   C   +  +A KL  +M+  G  P+VV++   I   C +G++  A ++F +M+   V
Sbjct: 133 ISSFCKEGKTDDAEKLVDEMRKDGLSPDVVTFNARISALCSSGKVLEASRIFRDMQIDEV 192

Query: 61  L----PNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCR 116
           L    PN +TY++++ G  +   +E A      L+E+MK  E+L +N  ++   +  L R
Sbjct: 193 LGLPQPNIITYNLMLGGFCKEGMLEEARA----LFEKMKVSENL-MNRESYNIWLLGLVR 247

Query: 117 EGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVS 176
            G + E   + ++M         ++   ++D LC++G    A  ++ +M   G+ P  V+
Sbjct: 248 IGKLLEAQLVLKEMVDMGMEPNVYSYNIVMDGLCKNGVLFDARMLMRLMTSSGVLPDTVT 307

Query: 177 YNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFML 236
           Y +++HG C  G    A  +L E ++ G  P+ +T  +L+  L  E  + +A ++LQ M 
Sbjct: 308 YTTLLHGYCHTGKVSEANNVLREMMRDGCSPNNYTCNILLYSLWKEGRISEAEELLQKMN 367

Query: 237 SKKDVDRTRICNIYLRALCLIKNPTELLNVLVFML-----------------------QT 273
            K  V  T  CNI +  LC      + + ++  M                        + 
Sbjct: 368 EKGYVIDTVTCNIVIDGLCNNGKLDKAIEIVNGMWTHGSAALGNLGNSYIGLVDDSDSRK 427

Query: 274 QCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQE 333
           +C PD+I+ +T+I+G CK GR+ EA K   +M+ GK   PD+  +   I      G+I  
Sbjct: 428 KCMPDLISYSTIISGLCKAGRVGEAKKKFIEMM-GKNLQPDSAIYDVFIHSFCKEGKISS 486

Query: 334 ALNLLYQV----------------------------------MPQRGYSPGIVTYNAVLR 359
           A  +L  +                                  M +RG SP +  YN VL 
Sbjct: 487 AFRVLKDMEKKGCNKTLQTYNSLIMGLGSKNQIFEIYGLIDEMRERGVSPDVSIYNNVLS 546

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCES---NQLDE------------ 404
            L    RV++A  V + ML  G+  + ++++I+I   C++   + +DE            
Sbjct: 547 SLCEGGRVKDAPSVLDEMLQKGISPNISSFSILIKAFCKACDFSAVDEIFEIALNVCGHK 606

Query: 405 -------------------AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY 445
                              AK  ++  +  S    N++Y  +I  LC+  K+ +A   L+
Sbjct: 607 EALYSLTFNELLVGGEVVKAKELFETALDRSFDVGNFLYKDLIDHLCKDEKLDDASGILH 666

Query: 446 ELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGN 503
           +L+D G   +   +  VIDG  K   K EA ++  +M +      A   ++ +K+H N
Sbjct: 667 KLIDKGYWFDPASFMPVIDGLGKRGNKHEADELAEKMMEM-----ASEGKVKNKVHQN 719



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 106/407 (26%), Positives = 181/407 (44%), Gaps = 40/407 (9%)

Query: 110 LVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRG 169
           L+ S  +EG V+ V  + +DM       E +    +I  LC SG    A  +   M ++G
Sbjct: 27  LLRSCTKEGRVDCVSWLCKDMVASGVSPETYTFNVLIGLLCDSGCLDDARELFDKMPEKG 86

Query: 170 LTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKAR 229
             P+  S+  +V G C+ G   +  +LL E  + G+ P++  Y  L+   C E   + A 
Sbjct: 87  CEPNEYSFGILVRGYCRAGFTSKGLELLGEMRRLGFSPNKVVYNTLISSFCKEGKTDDAE 146

Query: 230 KVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGF 289
           K+         VD  R                          +    PDV+T N  I+  
Sbjct: 147 KL---------VDEMR--------------------------KDGLSPDVVTFNARISAL 171

Query: 290 CKMGRIEEALKVLNDMVAGKFCA---PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
           C  G++ EA ++  DM   +      P+ +T+  ++ G    G ++EA   L++ M    
Sbjct: 172 CSSGKVLEASRIFRDMQIDEVLGLPQPNIITYNLMLGGFCKEGMLEEA-RALFEKMKVSE 230

Query: 347 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
                 +YN  L GL R+ ++ EA+ V   M+ +G+  +  +Y IV+DGLC++  L +A+
Sbjct: 231 NLMNRESYNIWLLGLVRIGKLLEAQLVLKEMVDMGMEPNVYSYNIVMDGLCKNGVLFDAR 290

Query: 407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466
                +     + D   Y  ++ G C +GK+ EA + L E++  G +PN    N+++   
Sbjct: 291 MLMRLMTSSGVLPDTVTYTTLLHGYCHTGKVSEANNVLREMMRDGCSPNNYTCNILLYSL 350

Query: 467 CKLSMKREAYQILREMRKNGLNPDAVTWRI-LDKLHGNRGNDFGLRI 512
            K     EA ++L++M + G   D VT  I +D L  N   D  + I
Sbjct: 351 WKEGRISEAEELLQKMNEKGYVIDTVTCNIVIDGLCNNGKLDKAIEI 397



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 93/336 (27%), Positives = 157/336 (46%), Gaps = 45/336 (13%)

Query: 172 PSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKV 231
           PS+  YN ++    K G       L ++ +  G  P  +T+ VL+  LC    L+ AR++
Sbjct: 19  PSIYLYNVLLRSCTKEGRVDCVSWLCKDMVASGVSPETYTFNVLIGLLCDSGCLDDAREL 78

Query: 232 LQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK 291
              M  K                                    C+P+  +   ++ G+C+
Sbjct: 79  FDKMPEK-----------------------------------GCEPNEYSFGILVRGYCR 103

Query: 292 MGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGI 351
            G   + L++L +M    F +P+ V + T+I      G+  +A  L+ + M + G SP +
Sbjct: 104 AGFTSKGLELLGEMRRLGF-SPNKVVYNTLISSFCKEGKTDDAEKLVDE-MRKDGLSPDV 161

Query: 352 VTYNAVLRGLFRLRRVEEAKEVFNCM-----LGIGVVADSTTYAIVIDGLCESNQLDEAK 406
           VT+NA +  L    +V EA  +F  M     LG+    +  TY +++ G C+   L+EA+
Sbjct: 162 VTFNARISALCSSGKVLEASRIFRDMQIDEVLGL-PQPNIITYNLMLGGFCKEGMLEEAR 220

Query: 407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466
             ++ +    N+ +   Y   + GL R GK+ EA   L E+VD G+ PN+  YN+V+DG 
Sbjct: 221 ALFEKMKVSENLMNRESYNIWLLGLVRIGKLLEAQLVLKEMVDMGMEPNVYSYNIVMDGL 280

Query: 467 CKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
           CK  +  +A  ++R M  +G+ PD VT+  L  LHG
Sbjct: 281 CKNGVLFDARMLMRLMTSSGVLPDTVTYTTL--LHG 314



 Score = 41.6 bits (96), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/84 (23%), Positives = 41/84 (48%)

Query: 414 WPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKR 473
           +P N    Y+Y  +++   + G++        ++V SGV+P    +NV+I   C      
Sbjct: 14  FPENPPSIYLYNVLLRSCTKEGRVDCVSWLCKDMVASGVSPETYTFNVLIGLLCDSGCLD 73

Query: 474 EAYQILREMRKNGLNPDAVTWRIL 497
           +A ++  +M + G  P+  ++ IL
Sbjct: 74  DARELFDKMPEKGCEPNEYSFGIL 97


>gi|22296415|dbj|BAC10183.1| pentatricopeptide repeat protein-like [Oryza sativa Japonica Group]
          Length = 624

 Score =  197 bits (502), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 139/505 (27%), Positives = 243/505 (48%), Gaps = 57/505 (11%)

Query: 10  VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMR---HCGVLPNSLT 66
           +GEA  L   + S   V + VSY T++   CR G  D A  +   M    H    PN+++
Sbjct: 61  LGEATSLLDALPS---VRDAVSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVS 117

Query: 67  YSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRI 126
           Y+VL+R +   R  ++A  L+     R      +  +   +  L+  LC    V++   +
Sbjct: 118 YTVLMRALCADRLADQAVGLL-----RSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVEL 172

Query: 127 AEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK 186
             +M +            ++   C+SGR     +V   M ++G+ P +V Y  ++  LCK
Sbjct: 173 MGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCK 232

Query: 187 HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRI 246
            G   +A+ +++  ++ G  P+  TY VL+  +C E  +++A  VL+ M S+K V     
Sbjct: 233 VGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKM-SEKGV----- 286

Query: 247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV 306
                                         PDV+T NT+I G   +  ++EA+ +L +MV
Sbjct: 287 -----------------------------APDVVTYNTLIKGLSDVLEMDEAMWLLEEMV 317

Query: 307 AGK-FCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLR 365
            GK    P+ VTF ++I GL ++GR+++A  +   +M + G    +VTYN ++ GL R+ 
Sbjct: 318 RGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQV-RAMMEETGCMVNLVTYNLLIGGLLRVH 376

Query: 366 RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFW----DDIVWPSNIHDN 421
           +V +A E+ + M  +G+  DS TY+I+I G C+  Q+D A+       D  + P   H  
Sbjct: 377 KVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFH-- 434

Query: 422 YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
             Y  ++  +C  G +  A +   E+ D+    ++V Y+ +I GACK    + A ++L+ 
Sbjct: 435 --YIPLLVAMCEQGMMERARNLFNEM-DNNFPLDVVAYSTMIHGACKAGDLKTAKELLKS 491

Query: 482 MRKNGLNPDAVTWRILDKLHGNRGN 506
           +   GL PDAVT+ I+  +    G+
Sbjct: 492 IVDEGLTPDAVTYSIVINMFAKSGD 516



 Score =  184 bits (468), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 128/507 (25%), Positives = 242/507 (47%), Gaps = 80/507 (15%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M  LC      +A  L   M+S G   +VV+Y TLI G C   E+D A ++  EM   G+
Sbjct: 122 MRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGI 181

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN + YS L++G  ++   E    +  ++ E+  E + +      +  L+DSLC+ G  
Sbjct: 182 EPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVV-----MYTGLIDSLCKVG-- 234

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                                         ++ + HG   V+ +M +RGL P++V+YN +
Sbjct: 235 ------------------------------KAKKAHG---VMDMMVRRGLEPNVVTYNVL 261

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++ +CK G    A  +L++  + G  P   TY  L++GL    ++++A  +L+ M+  K+
Sbjct: 262 INCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKN 321

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           +                                  +P+V+T N+VI G C +GR+ +A +
Sbjct: 322 I---------------------------------VKPNVVTFNSVIQGLCDIGRMRQAFQ 348

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           V   M+    C  + VT+  +I GLL V ++++A+ L+ + M   G  P   TY+ +++G
Sbjct: 349 V-RAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDE-MTSLGLEPDSFTYSILIKG 406

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI--VWPSNI 418
             ++ +V+ A+++ + M   G+  +   Y  ++  +CE   ++ A+  ++++   +P ++
Sbjct: 407 FCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEMDNNFPLDV 466

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI 478
                Y+ MI G C++G +  A   L  +VD G+TP+ V Y++VI+   K      A  +
Sbjct: 467 ---VAYSTMIHGACKAGDLKTAKELLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGV 523

Query: 479 LREMRKNGLNPDAVTWRILDKLHGNRG 505
           L++M  +G  PD   +  L + +  +G
Sbjct: 524 LKQMTASGFLPDVAVFDSLIQGYSTKG 550



 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 122/467 (26%), Positives = 229/467 (49%), Gaps = 10/467 (2%)

Query: 27  PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVL 86
           PN VSYT L+   C     D A  +   MR  GV  + +TY  L+RG+    +V++A  L
Sbjct: 113 PNAVSYTVLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVEL 172

Query: 87  MFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMI 146
           M ++ E   E      N   +++L+   C+ G   +V ++  +M +     +      +I
Sbjct: 173 MGEMCESGIEP-----NVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLI 227

Query: 147 DSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL 206
           DSLC+ G+   A  V+ +M +RGL P++V+YN +++ +CK G    A  +L++  + G  
Sbjct: 228 DSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVA 287

Query: 207 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC--NIYLRALCLIKNPTELL 264
           P   TY  L++GL    ++++A  +L+ M+  K++ +  +   N  ++ LC I    +  
Sbjct: 288 PDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAF 347

Query: 265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 324
            V   M +T C  +++T N +I G  ++ ++ +A++++++M +     PD+ T++ +I G
Sbjct: 348 QVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGL-EPDSFTYSILIKG 406

Query: 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 384
              + ++  A +LL   M  RG  P +  Y  +L  +     +E A+ +FN M       
Sbjct: 407 FCKMWQVDRAEDLL-STMRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEMDN-NFPL 464

Query: 385 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFL 444
           D   Y+ +I G C++  L  AK     IV      D   Y+ +I    +SG +  A   L
Sbjct: 465 DVVAYSTMIHGACKAGDLKTAKELLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGVL 524

Query: 445 YELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 491
            ++  SG  P++  ++ +I G        +  +++REM    +  D+
Sbjct: 525 KQMTASGFLPDVAVFDSLIQGYSTKGEINKVLELIREMITKNIALDS 571



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 106/438 (24%), Positives = 198/438 (45%), Gaps = 51/438 (11%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC  + V +A +L  +M   G  PNVV Y++L+ GYC++G  +   KVF EM   G+ P+
Sbjct: 160 LCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPD 219

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV--- 120
            + Y+ L+  + +    ++A+ +M  +  R      L  N   +  L++ +C+EG V   
Sbjct: 220 VVMYTGLIDSLCKVGKAKKAHGVMDMMVRR-----GLEPNVVTYNVLINCMCKEGSVKEA 274

Query: 121 --------------------------------NEVFRIAEDMPQGKSVNEE--FACGHMI 146
                                           +E   + E+M +GK++ +        +I
Sbjct: 275 IGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVI 334

Query: 147 DSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL 206
             LC  GR   A +V  +M + G   +LV+YN ++ GL +     +A +L++E    G  
Sbjct: 335 QGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLE 394

Query: 207 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALC---LIKNPTEL 263
           P   TY +L++G C    +++A  +L  M  +            L A+C   +++    L
Sbjct: 395 PDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQGMMERARNL 454

Query: 264 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF 323
            N     +      DV+  +T+I+G CK G ++ A ++L  +V  +   PDAVT++ +I 
Sbjct: 455 FN----EMDNNFPLDVVAYSTMIHGACKAGDLKTAKELLKSIV-DEGLTPDAVTYSIVIN 509

Query: 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 383
                G ++ A  +L Q M   G+ P +  ++++++G      + +  E+   M+   + 
Sbjct: 510 MFAKSGDMEAANGVLKQ-MTASGFLPDVAVFDSLIQGYSTKGEINKVLELIREMITKNIA 568

Query: 384 ADSTTYAIVIDGLCESNQ 401
            DS   + +   L  SN+
Sbjct: 569 LDSKIISTLSTSLVASNE 586



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 96/347 (27%), Positives = 158/347 (45%), Gaps = 11/347 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC + +  +AH +   M  RG  PNVV+Y  LI+  C+ G +  A  V  +M   GV
Sbjct: 227 IDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGV 286

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TY+ L++G+    DV   +  M+ L E ++ +  +  N   F +++  LC  G +
Sbjct: 287 APDVVTYNTLIKGL---SDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRM 343

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            + F++   M +   +        +I  L R  +   A  ++  M   GL P   +Y+ +
Sbjct: 344 RQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSIL 403

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G CK     RA  LL      G  P    Y  L+  +C +  +E+AR +   M +   
Sbjct: 404 IKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEMDNNFP 463

Query: 241 VDRTRICNIYLRALCL---IKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
           +D      + +   C    +K   ELL  +V        PD +T + VIN F K G +E 
Sbjct: 464 LDVVAYSTM-IHGACKAGDLKTAKELLKSIV---DEGLTPDAVTYSIVINMFAKSGDMEA 519

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ 344
           A  VL  M A  F  PD   F ++I G    G I + L L+ +++ +
Sbjct: 520 ANGVLKQMTASGFL-PDVAVFDSLIQGYSTKGEINKVLELIREMITK 565


>gi|449463537|ref|XP_004149490.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Cucumis sativus]
          Length = 786

 Score =  197 bits (502), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 133/506 (26%), Positives = 241/506 (47%), Gaps = 42/506 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    +  + +LF  M+  G  P+VV+Y +LI GY + G ++    +F+EM+  G 
Sbjct: 296 IDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGC 355

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P+ +TY+ L+    +   + RA    F+ +  MK    L  N   ++ L+D+ C+EG +
Sbjct: 356 VPDIITYNGLINCYCKFEKMPRA----FEYFSEMKNN-GLKPNVVTYSTLIDAFCKEGMM 410

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
               ++  DM +   +  EF    +ID+ C++G    A +++  M + G+  ++V+Y ++
Sbjct: 411 QGAIKLFVDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTAL 470

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GLCK G  + A ++    ++ G  P++  Y  LV G      +E A K+L+ M     
Sbjct: 471 LDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTE--- 527

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                 CNI                          +PD+I   ++I G C   ++EE   
Sbjct: 528 ------CNI--------------------------KPDLILYGSIIWGHCSQRKLEETKL 555

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +L +M +    A + V  TTII      G+  +ALN  +Q M   G    IVTY  ++ G
Sbjct: 556 ILEEMKSRGISA-NPVISTTIIDAYFKAGKSSDALNF-FQEMQDVGVEATIVTYCVLIDG 613

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L +   VE A + F  ML +G+  +   Y  +IDGLC++N ++ AK+ +D++       D
Sbjct: 614 LCKAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCKNNCIESAKKLFDEMQCRGMTPD 673

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              + A+I G  + G + EA+  +  + +  +  ++  Y  ++ G  +     +A +   
Sbjct: 674 ITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFN 733

Query: 481 EMRKNGLNPDAVTWRILDKLHGNRGN 506
           EM + G+ P+ V    L + +  RG 
Sbjct: 734 EMIEKGILPEEVLCICLLREYYKRGQ 759



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 119/500 (23%), Positives = 229/500 (45%), Gaps = 45/500 (9%)

Query: 7   LSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLT 66
           L  + EA++ F  M++   +P   S   L+H   ++G   +  K F++M   G+ P+  T
Sbjct: 232 LGLLEEANECFSRMRNFRTLPKARSCNFLLHRLSKSGNGQLVRKFFNDMIGAGIAPSVFT 291

Query: 67  YSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRI 126
           Y+V++  + +  D+E +  L  ++      E  LS +   + +L+D   + G + EV  +
Sbjct: 292 YNVMIDYLCKEGDLENSRRLFVQM-----REMGLSPDVVTYNSLIDGYGKVGSLEEVASL 346

Query: 127 AEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK 186
             +M     V +      +I+  C+  +   A      M+  GL P++V+Y++++   CK
Sbjct: 347 FNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCK 406

Query: 187 HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRI 246
            G    A +L  +  + G LP+E TY  L++  C   +L +A K+L  M           
Sbjct: 407 EGMMQGAIKLFVDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDM----------- 455

Query: 247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV 306
                                   LQ   + +++T   +++G CK GR+ EA +V   M+
Sbjct: 456 ------------------------LQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSML 491

Query: 307 AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 366
                +P+   +T ++ G +   R+++A+ +L Q M +    P ++ Y +++ G    R+
Sbjct: 492 KDGI-SPNQQVYTALVHGYIKAERMEDAMKILKQ-MTECNIKPDLILYGSIIWGHCSQRK 549

Query: 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAA 426
           +EE K +   M   G+ A+      +ID   ++ +  +A  F+ ++           Y  
Sbjct: 550 LEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCV 609

Query: 427 MIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG 486
           +I GLC++G +  AV +   ++  G+ PN+  Y  +IDG CK +    A ++  EM+  G
Sbjct: 610 LIDGLCKAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCKNNCIESAKKLFDEMQCRG 669

Query: 487 LNPDAVTWRIL---DKLHGN 503
           + PD   +  L   +  HGN
Sbjct: 670 MTPDITAFTALIDGNLKHGN 689



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 109/452 (24%), Positives = 206/452 (45%), Gaps = 50/452 (11%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C   ++  A + F +MK+ G  PNVV+Y+TLI  +C+ G M  A K+F +MR  G+LPN 
Sbjct: 370 CKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNE 429

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
            TY+                                        +L+D+ C+ G + E +
Sbjct: 430 FTYT----------------------------------------SLIDANCKAGNLTEAW 449

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
           ++  DM Q            ++D LC++GR   A  V   M K G++P+   Y ++VHG 
Sbjct: 450 KLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGY 509

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM----LSKKD 240
            K      A ++L++  +    P    Y  ++ G C +  LE+ + +L+ M    +S   
Sbjct: 510 IKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANP 569

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           V  T I + Y +A       ++ LN    M     +  ++T   +I+G CK G +E A+ 
Sbjct: 570 VISTTIIDAYFKA----GKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCKAGIVELAVD 625

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
               M++     P+   +T++I GL     I+ A   L+  M  RG +P I  + A++ G
Sbjct: 626 YFCRMLSLGL-QPNVAVYTSLIDGLCKNNCIESA-KKLFDEMQCRGMTPDITAFTALIDG 683

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
             +   ++EA  + + M  + +  D   Y  ++ G  +  +L +A++F+++++    + +
Sbjct: 684 NLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMIEKGILPE 743

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGV 452
             +   +++   + G++ EA+    E+   G+
Sbjct: 744 EVLCICLLREYYKRGQLDEAIELKNEMERMGL 775



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 99/406 (24%), Positives = 174/406 (42%), Gaps = 44/406 (10%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C    +  A KLF DM+  G +PN  +YT+LI   C+ G +  A+K+ ++M   GV
Sbjct: 401 IDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGV 460

Query: 61  LPNSLTYSVLVRGVLRT-RDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGY 119
             N +TY+ L+ G+ +  R +E   V       R   ++ +S N   +  LV    +   
Sbjct: 461 KLNIVTYTALLDGLCKAGRMIEAEEVF------RSMLKDGISPNQQVYTALVHGYIKAER 514

Query: 120 VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           + +  +I + M +     +    G +I   C   +      ++  M+ RG++ + V   +
Sbjct: 515 MEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTT 574

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           I+    K G    A    +E    G   +  TY VL++GLC    +E A           
Sbjct: 575 IIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCKAGIVELA----------- 623

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                                   ++    ML    QP+V    ++I+G CK   IE A 
Sbjct: 624 ------------------------VDYFCRMLSLGLQPNVAVYTSLIDGLCKNNCIESAK 659

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           K+ ++M   +   PD   FT +I G L  G +QEAL L+ + M +      +  Y +++ 
Sbjct: 660 KLFDEMQC-RGMTPDITAFTALIDGNLKHGNLQEALVLISR-MTELAIEFDLHVYTSLVS 717

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA 405
           G  +   + +A++ FN M+  G++ +      ++    +  QLDEA
Sbjct: 718 GFSQCGELHQARKFFNEMIEKGILPEEVLCICLLREYYKRGQLDEA 763



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 102/397 (25%), Positives = 180/397 (45%), Gaps = 60/397 (15%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C    + EA KL  DM   G   N+V+YT L+ G C+ G M  A +VF  M   G+
Sbjct: 436 IDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGI 495

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKE---EEDLSVNNAAFANLVDSLCRE 117
            PN   Y+ LV G ++   +E A     K+ ++M E   + DL +    + +++   C +
Sbjct: 496 SPNQQVYTALVHGYIKAERMEDA----MKILKQMTECNIKPDLIL----YGSIIWGHCSQ 547

Query: 118 GYVNEVFRIAEDM-PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVS 176
             + E   I E+M  +G S N   +   +ID+  ++G++  A      M+  G+  ++V+
Sbjct: 548 RKLEETKLILEEMKSRGISANPVIST-TIIDAYFKAGKSSDALNFFQEMQDVGVEATIVT 606

Query: 177 YNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFML 236
           Y  ++ GLCK G    A       +  G  P+   Y  L++GLC  + +E A+K+   M 
Sbjct: 607 YCVLIDGLCKAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCKNNCIESAKKLFDEM- 665

Query: 237 SKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQ---PDVITLNTVINGFCKMG 293
                                                QC+   PD+     +I+G  K G
Sbjct: 666 -------------------------------------QCRGMTPDITAFTALIDGNLKHG 688

Query: 294 RIEEALKVLNDM--VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGI 351
            ++EAL +++ M  +A +F   D   +T+++ G    G + +A    +  M ++G  P  
Sbjct: 689 NLQEALVLISRMTELAIEF---DLHVYTSLVSGFSQCGELHQARK-FFNEMIEKGILPEE 744

Query: 352 VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTT 388
           V    +LR  ++  +++EA E+ N M  +G++ +S T
Sbjct: 745 VLCICLLREYYKRGQLDEAIELKNEMERMGLITESAT 781



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 109/225 (48%), Gaps = 2/225 (0%)

Query: 282 LNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQV 341
            + + + F ++G +EEA +  + M   +   P A +   ++  L   G  Q  +   +  
Sbjct: 222 FDVLFSVFVELGLLEEANECFSRMRNFR-TLPKARSCNFLLHRLSKSGNGQ-LVRKFFND 279

Query: 342 MPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ 401
           M   G +P + TYN ++  L +   +E ++ +F  M  +G+  D  TY  +IDG  +   
Sbjct: 280 MIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGS 339

Query: 402 LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNV 461
           L+E    ++++     + D   Y  +I   C+  K+  A  +  E+ ++G+ PN+V Y+ 
Sbjct: 340 LEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYST 399

Query: 462 VIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           +ID  CK  M + A ++  +MR+ GL P+  T+  L   +   GN
Sbjct: 400 LIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLIDANCKAGN 444



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 68/145 (46%)

Query: 350 GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFW 409
           G   ++ +      L  +EEA E F+ M     +  + +   ++  L +S      ++F+
Sbjct: 218 GSGVFDVLFSVFVELGLLEEANECFSRMRNFRTLPKARSCNFLLHRLSKSGNGQLVRKFF 277

Query: 410 DDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKL 469
           +D++        + Y  MI  LC+ G +  +     ++ + G++P++V YN +IDG  K+
Sbjct: 278 NDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKV 337

Query: 470 SMKREAYQILREMRKNGLNPDAVTW 494
               E   +  EM+  G  PD +T+
Sbjct: 338 GSLEEVASLFNEMKDVGCVPDIITY 362


>gi|55709857|gb|AAV58825.1| hypothetical protein [Arabidopsis thaliana]
          Length = 946

 Score =  197 bits (502), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 139/531 (26%), Positives = 246/531 (46%), Gaps = 60/531 (11%)

Query: 4   LCGL---SRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           LCG     ++G   ++   M   G  P+   + +L+H YC +G+   AYK+  +M  CG 
Sbjct: 303 LCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGH 362

Query: 61  LPNSLTYSVLVRGVLRTRD-----------------------VERANVLMFK--LWERMK 95
           +P  + Y++L+  +   +D                       + + NV  F   L    K
Sbjct: 363 MPGYVVYNILIGSICGDKDSLNFDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGK 422

Query: 96  EEEDLSV-----------NNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGH 144
            E+  SV           + + ++ +++ LC    +   F + E+M +G  V + +    
Sbjct: 423 YEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTI 482

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
           M+DS C++G    A +    MR+ G TP++V+Y +++H   K      A +L E  +  G
Sbjct: 483 MVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEG 542

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL 264
            LP+  TY  L++G C    +EKA ++ + M   KDV      ++Y +      + +E  
Sbjct: 543 CLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDV---DMYFKQY---DDNSE-- 594

Query: 265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 324
                      +P+V+T   +++GFCK  R+EEA K+L D ++ + C P+ + +  +I G
Sbjct: 595 -----------RPNVVTYGALLDGFCKSHRVEEARKLL-DAMSMEGCEPNQIVYDALIDG 642

Query: 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 384
           L  VG++ EA  +  + M + G+   + TY++++   F+++R + A +V + ML      
Sbjct: 643 LCKVGKLDEAQEVKTE-MSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAP 701

Query: 385 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFL 444
           +   Y  +IDGLC+  + DEA +    +       +   Y AMI G    GKI   +  L
Sbjct: 702 NVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELL 761

Query: 445 YELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWR 495
             +   GV PN V Y V+ID  CK      A+ +L EM++         +R
Sbjct: 762 ERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYR 812



 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 142/502 (28%), Positives = 233/502 (46%), Gaps = 37/502 (7%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC  S++  A  LF +MK  G V +V +YT ++  +C+ G ++ A K F+EMR  G 
Sbjct: 449 LNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGC 508

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +TY+ L+   L+ + V  AN    +L+E M  E  L  N   ++ L+D  C+ G V
Sbjct: 509 TPNVVTYTALIHAYLKAKKVSYAN----ELFETMLSEGCLP-NIVTYSALIDGHCKAGQV 563

Query: 121 NEVFRIAEDMPQGKSV------------NEE----FACGHMIDSLCRSGRNHGASRVVYV 164
            +  +I E M   K V            N E       G ++D  C+S R   A +++  
Sbjct: 564 EKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDA 623

Query: 165 MRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESD 224
           M   G  P+ + Y++++ GLCK G    A ++  E  + G+  + +TY  L++       
Sbjct: 624 MSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKR 683

Query: 225 LEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNT 284
            + A KVL  ML         I    +  LC +    E   ++  M +  CQP+V+T   
Sbjct: 684 QDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTA 743

Query: 285 VINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ 344
           +I+GF  +G+IE  L++L  M   K  AP+ VT+  +I      G +  A NLL + M Q
Sbjct: 744 MIDGFGMIGKIETCLELLERM-GSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEE-MKQ 801

Query: 345 RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTT-----YAIVIDGLCES 399
             +      Y  V+ G  +     E  E    +  IG   D T      Y ++ID L ++
Sbjct: 802 THWPTHTAGYRKVIEGFNK-----EFIESLGLLDEIG--QDDTAPFLSVYRLLIDNLIKA 854

Query: 400 NQLDEAKRFWDDIVWPSNIHDNY--VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIV 457
            +L+ A R  +++   S    +Y   Y ++I+ LC + K+  A     E+   GV P + 
Sbjct: 855 QRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQ 914

Query: 458 CYNVVIDGACKLSMKREAYQIL 479
            +  +I G  + S   EA  +L
Sbjct: 915 SFCSLIKGLFRNSKISEALLLL 936



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 139/552 (25%), Positives = 240/552 (43%), Gaps = 70/552 (12%)

Query: 6   GLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSL 65
            L +VG+  +    +++   VP+ V YT LI G C     + A    + MR    LPN +
Sbjct: 238 SLCKVGKWREALTLVETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVV 297

Query: 66  TYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFR 125
           TYS L+ G L  + + R   ++      M   E    +   F +LV + C  G  +  ++
Sbjct: 298 TYSTLLCGCLNKKQLGRCKRVL-----NMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYK 352

Query: 126 IAEDMPQ--------------------------------GKSVNEEFACGHMIDS----- 148
           + + M +                                 K+ +E  A G +++      
Sbjct: 353 LLKKMVKCGHMPGYVVYNILIGSICGDKDSLNFDLLDLAEKAYSEMLAAGVVLNKINVSS 412

Query: 149 ----LCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
               LC +G+   A  V+  M  +G  P   +Y+ +++ LC       A+ L EE  + G
Sbjct: 413 FTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGG 472

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFM----LSKKDVDRTRICNIYLRALCLIKNP 260
            +   +TY ++V+  C    +E+ARK    M     +   V  T + + YL+A   +   
Sbjct: 473 LVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAK-KVSYA 531

Query: 261 TELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCA-------- 312
            EL      ML   C P+++T + +I+G CK G++E+A ++   M   K           
Sbjct: 532 NELFET---MLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQ 588

Query: 313 -------PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLR 365
                  P+ VT+  ++ G     R++EA  LL   M   G  P  + Y+A++ GL ++ 
Sbjct: 589 YDDNSERPNVVTYGALLDGFCKSHRVEEARKLL-DAMSMEGCEPNQIVYDALIDGLCKVG 647

Query: 366 RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYA 425
           +++EA+EV   M   G  A   TY+ +ID   +  + D A +    ++  S   +  +Y 
Sbjct: 648 KLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYT 707

Query: 426 AMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN 485
            MI GLC+ GK  EA   +  + + G  PN+V Y  +IDG   +       ++L  M   
Sbjct: 708 EMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSK 767

Query: 486 GLNPDAVTWRIL 497
           G+ P+ VT+R+L
Sbjct: 768 GVAPNYVTYRVL 779



 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 129/534 (24%), Positives = 231/534 (43%), Gaps = 64/534 (11%)

Query: 35  LIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRT----------RDVERAN 84
           L+  +CR G   +A +    ++     P+  TY+ L++  L+           R++  AN
Sbjct: 165 LVRKHCRNGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMSLAN 224

Query: 85  VLM--FKL------------WER---MKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIA 127
           + M  F L            W     + E E+   +   +  L+  LC      E     
Sbjct: 225 LRMDGFTLRCFAYSLCKVGKWREALTLVETENFVPDTVFYTKLISGLCEASLFEEAMDFL 284

Query: 128 EDMPQGKSVN-----EEFACGHMIDSLCRSGRNHG-ASRVVYVMRKRGLTPSLVSYNSIV 181
             M     +          CG      C + +  G   RV+ +M   G  PS   +NS+V
Sbjct: 285 NRMRATSCLPNVVTYSTLLCG------CLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLV 338

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESD------LEKARKVLQFM 235
           H  C  G    AY+LL++ ++ G++P    Y +L+  +CG+ D      L+ A K    M
Sbjct: 339 HAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNFDLLDLAEKAYSEM 398

Query: 236 LSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 295
           L+   V      + + R LC      +  +V+  M+     PD  T + V+N  C   ++
Sbjct: 399 LAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKM 458

Query: 296 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN 355
           E A  +  +M  G   A D  T+T ++      G I++A    +  M + G +P +VTY 
Sbjct: 459 ELAFLLFEEMKRGGLVA-DVYTYTIMVDSFCKAGLIEQARK-WFNEMREVGCTPNVVTYT 516

Query: 356 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP 415
           A++    + ++V  A E+F  ML  G + +  TY+ +IDG C++ Q+++A + ++ +   
Sbjct: 517 ALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGS 576

Query: 416 SNIHD---------------NYV-YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCY 459
            ++ D               N V Y A++ G C+S ++ EA   L  +   G  PN + Y
Sbjct: 577 KDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVY 636

Query: 460 NVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW-RILDKLHGNRGNDFGLRI 512
           + +IDG CK+    EA ++  EM ++G      T+  ++D+    +  D   ++
Sbjct: 637 DALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKV 690



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 117/477 (24%), Positives = 197/477 (41%), Gaps = 56/477 (11%)

Query: 56  RHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLC 115
           R  G    +  Y+ LV  ++R  D +     + ++ +  KE          F   ++ L 
Sbjct: 116 RQIGYKHTAPVYNALVDLIVRDDDEKVPEEFLQQIRDDDKE---------VFGQFLNVLV 166

Query: 116 REGYVNEVFRIA-EDMPQGKSVN-----EEFACGHMIDSLCRSGRNHGASRVVYVMRKRG 169
           R+   N  F IA E++ + K          + C  +I +  ++ R   AS +   M    
Sbjct: 167 RKHCRNGSFSIALEELGRLKDFRFRPSRSTYNC--LIQAFLKADRLDSASLIHREMSLAN 224

Query: 170 LTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKAR 229
           L     +     + LCK G    A  L+E      ++P    Y  L+ GLC  S  E+A 
Sbjct: 225 LRMDGFTLRCFAYSLCKVGKWREALTLVETE---NFVPDTVFYTKLISGLCEASLFEEAM 281

Query: 230 KVLQFMLSKKDVDRTRIC--NI--YLRALCLIKNPTEL---LNVLVFMLQTQCQPDVITL 282
             L  M       R   C  N+  Y   LC   N  +L     VL  M+   C P     
Sbjct: 282 DFLNRM-------RATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIF 334

Query: 283 NTVINGFCKMGRIEEALKVLNDMVAGKFCA--PDAVTFTTIIFGLLNVGRI---QEALNL 337
           N++++ +C  G    A K+L  MV    C   P  V +  +I      G I   +++LN 
Sbjct: 335 NSLVHAYCTSGDHSYAYKLLKKMVK---CGHMPGYVVYNILI------GSICGDKDSLNF 385

Query: 338 LYQVMPQRGYS----PGIV----TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTY 389
               + ++ YS     G+V      ++  R L    + E+A  V   M+G G + D++TY
Sbjct: 386 DLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTY 445

Query: 390 AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449
           + V++ LC +++++ A   ++++     + D Y Y  M+   C++G I +A  +  E+ +
Sbjct: 446 SKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMRE 505

Query: 450 SGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
            G TPN+V Y  +I    K      A ++   M   G  P+ VT+  L   H   G 
Sbjct: 506 VGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQ 562



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 118/239 (49%), Gaps = 13/239 (5%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC + +  EA+KL   M+ +G  PNVV+YT +I G+   G+++   ++ + M   GV
Sbjct: 710 IDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGV 769

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +TY VL+    +   ++ A+     L E MK+      + A +  +++   +E   
Sbjct: 770 APNYVTYRVLIDHCCKNGALDVAH----NLLEEMKQTH-WPTHTAGYRKVIEGFNKE--F 822

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLV----S 176
            E   + +++ Q  +         +ID+L ++ R   A R++  +     + +LV    +
Sbjct: 823 IESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVAT--FSATLVDYSST 880

Query: 177 YNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM 235
           YNS++  LC       A+QL  E  + G +P   ++  L++GL   S + +A  +L F+
Sbjct: 881 YNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRNSKISEALLLLDFI 939


>gi|414586649|tpg|DAA37220.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
 gi|414586650|tpg|DAA37221.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
          Length = 969

 Score =  197 bits (502), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 135/504 (26%), Positives = 248/504 (49%), Gaps = 28/504 (5%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   +V +A  LF +MKS G +P+V +YT LI  +C+ G ++ A   FDEM   G  P+
Sbjct: 465 LCEAMKVEKAFLLFQEMKSVGVIPDVYTYTILIDSFCKVGLIEQARSWFDEMESVGCSPS 524

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY+ L+   L+T+ V +A+     ++ RM +    + N   ++ LVD LC+ G   + 
Sbjct: 525 VVTYTALLHAYLKTKQVPQAS----DIFHRMVDA-GCAPNTITYSALVDGLCKAGESQKA 579

Query: 124 FRI-AEDMPQGKSVNEEF---------------ACGHMIDSLCRSGRNHGASRVVYVMRK 167
             + A+ +    +V  +F                 G +ID LC++ +   A  ++ VM  
Sbjct: 580 CEVYAKMIGTSDNVGSDFYFEGEHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDVMSS 639

Query: 168 RGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEK 227
            G  P+ + Y++++ G CK G    A ++     + GYLP+ HTY  L++ +  +  L+ 
Sbjct: 640 NGCEPNHIIYDALIDGFCKVGKLDNAQEVFFRMSKCGYLPTVHTYTSLIDAMFKDRRLDL 699

Query: 228 ARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVIN 287
           A KVL  ML              +  LC I    + L +L  M +  C P+V+T  ++I+
Sbjct: 700 AIKVLSQMLESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEKRGCNPNVVTYTSLID 759

Query: 288 GFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGY 347
           G  K G+++ +L++   M+  + CAP+ VT+  +I      G + EA +LL + M Q  +
Sbjct: 760 GLGKSGKVDMSLQLFTQMIT-QGCAPNYVTYRVLINHCCAAGLLDEAHSLLSE-MKQTYW 817

Query: 348 SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKR 407
              +  Y +V++G    ++   +  +   +   G+V+ +  Y ++ID   ++ +L++A  
Sbjct: 818 PKYVQGYCSVVQGFS--KKFIASLGLLEELESHGMVSIAPVYGLLIDSFSKAGRLEKALE 875

Query: 408 FWDDIVWPS---NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
              +++  S   NI     Y ++I+ LC + ++ +A     E+   GV P +  +  +I 
Sbjct: 876 LHKEMMEVSSSLNITSKDTYTSLIQALCLASQLEKAFELYSEITRKGVVPELSAFICLIK 935

Query: 465 GACKLSMKREAYQILREMRKNGLN 488
           G  K++   EA Q+   M   G+N
Sbjct: 936 GLIKVNKWNEALQLCYSMCDEGVN 959



 Score =  181 bits (459), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 129/511 (25%), Positives = 227/511 (44%), Gaps = 64/511 (12%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           ++G   ++   M + G  PN   + +L+H YC   +   AYK+ + M  CG  P  + Y+
Sbjct: 324 QLGWCKRIISMMMNEGCNPNPSLFNSLVHSYCNARDYPYAYKLLNRMAGCGCPPGYVVYN 383

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLS---VNNAAFANLVDSLCREGYVNEVFR 125
           + +  +    ++   ++L   L E++ EE   S   +N    AN    LC  G  ++ F+
Sbjct: 384 IFIGSICSGEELPSPDLL--ALAEKVYEEMLASSCVLNKVNTANFARCLCGMGKFDKAFQ 441

Query: 126 IAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLC 185
           I                                   + +M ++G  P   +Y+ ++  LC
Sbjct: 442 I-----------------------------------IKLMMRKGFVPDTSTYSKVITFLC 466

Query: 186 KHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM----LSKKDV 241
           +     +A+ L +E    G +P  +TY +L++  C    +E+AR     M     S   V
Sbjct: 467 EAMKVEKAFLLFQEMKSVGVIPDVYTYTILIDSFCKVGLIEQARSWFDEMESVGCSPSVV 526

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
             T + + YL+     K   +  ++   M+   C P+ IT + +++G CK G  ++A +V
Sbjct: 527 TYTALLHAYLKT----KQVPQASDIFHRMVDAGCAPNTITYSALVDGLCKAGESQKACEV 582

Query: 302 ------LNDMVAGKF---------CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
                  +D V   F          AP+ VT+  +I GL    ++ +A  LL  VM   G
Sbjct: 583 YAKMIGTSDNVGSDFYFEGEHTDSIAPNVVTYGALIDGLCKAHKVVDAQELL-DVMSSNG 641

Query: 347 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
             P  + Y+A++ G  ++ +++ A+EVF  M   G +    TY  +ID + +  +LD A 
Sbjct: 642 CEPNHIIYDALIDGFCKVGKLDNAQEVFFRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAI 701

Query: 407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466
           +    ++  S   +   Y AMI GLCR G+  +A+  L  +   G  PN+V Y  +IDG 
Sbjct: 702 KVLSQMLESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEKRGCNPNVVTYTSLIDGL 761

Query: 467 CKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            K      + Q+  +M   G  P+ VT+R+L
Sbjct: 762 GKSGKVDMSLQLFTQMITQGCAPNYVTYRVL 792



 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 120/529 (22%), Positives = 222/529 (41%), Gaps = 54/529 (10%)

Query: 35  LIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVE---RANVLMFKL- 90
           ++   CR G    A +    ++  G  P+  TY+ LV+ +     ++   R    M +L 
Sbjct: 178 IVRKCCRHGAWAKALEELGRLKDFGYRPSGATYNALVQVLATAGQMDMGFRVQKEMSELG 237

Query: 91  --------------------WER---MKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIA 127
                               W     M E ED  ++      ++  L      +E     
Sbjct: 238 FCTDKFTVGCFAQALCKEGRWSDALVMIEREDFKLDTVLCTQMISGLMEASLFDEAISFL 297

Query: 128 EDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKH 187
             M     +        ++    +  +     R++ +M   G  P+   +NS+VH  C  
Sbjct: 298 HRMRCNSCIPNVVTYRTLLAGFLKKKQLGWCKRIISMMMNEGCNPNPSLFNSLVHSYCNA 357

Query: 188 GGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEK------ARKVLQFMLSKKDV 241
                AY+LL      G  P    Y + +  +C   +L        A KV + ML+   V
Sbjct: 358 RDYPYAYKLLNRMAGCGCPPGYVVYNIFIGSICSGEELPSPDLLALAEKVYEEMLASSCV 417

Query: 242 -DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
            ++    N + R LC +    +   ++  M++    PD  T + VI   C+  ++E+A  
Sbjct: 418 LNKVNTAN-FARCLCGMGKFDKAFQIIKLMMRKGFVPDTSTYSKVITFLCEAMKVEKAFL 476

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +  +M +     PD  T+T +I     VG I++A +  +  M   G SP +VTY A+L  
Sbjct: 477 LFQEMKSVGV-IPDVYTYTILIDSFCKVGLIEQARS-WFDEMESVGCSPSVVTYTALLHA 534

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN--- 417
             + ++V +A ++F+ M+  G   ++ TY+ ++DGLC++ +  +A   +  ++  S+   
Sbjct: 535 YLKTKQVPQASDIFHRMVDAGCAPNTITYSALVDGLCKAGESQKACEVYAKMIGTSDNVG 594

Query: 418 ------------IHDNYV-YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
                       I  N V Y A+I GLC++ K+ +A   L  +  +G  PN + Y+ +ID
Sbjct: 595 SDFYFEGEHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDVMSSNGCEPNHIIYDALID 654

Query: 465 GACKLSMKREAYQILREMRKNGLNPDAVTW-RILDKLHGNRGNDFGLRI 512
           G CK+     A ++   M K G  P   T+  ++D +  +R  D  +++
Sbjct: 655 GFCKVGKLDNAQEVFFRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAIKV 703



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/326 (23%), Positives = 140/326 (42%), Gaps = 11/326 (3%)

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
           N IV   C+HG   +A + L     FGY PS  TY  LV+ L     ++   +V + M  
Sbjct: 176 NVIVRKCCRHGAWAKALEELGRLKDFGYRPSGATYNALVQVLATAGQMDMGFRVQKEMSE 235

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
                       + +ALC         + LV + +   + D +    +I+G  +    +E
Sbjct: 236 LGFCTDKFTVGCFAQALC---KEGRWSDALVMIEREDFKLDTVLCTQMISGLMEASLFDE 292

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           A+  L+ M     C P+ VT+ T++ G L   ++     ++  +M   G +P    +N++
Sbjct: 293 AISFLHRMRCNS-CIPNVVTYRTLLAGFLKKKQLGWCKRIISMMM-NEGCNPNPSLFNSL 350

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE------AKRFWDD 411
           +      R    A ++ N M G G       Y I I  +C   +L        A++ +++
Sbjct: 351 VHSYCNARDYPYAYKLLNRMAGCGCPPGYVVYNIFIGSICSGEELPSPDLLALAEKVYEE 410

Query: 412 IVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSM 471
           ++  S + +    A   + LC  GK  +A   +  ++  G  P+   Y+ VI   C+   
Sbjct: 411 MLASSCVLNKVNTANFARCLCGMGKFDKAFQIIKLMMRKGFVPDTSTYSKVITFLCEAMK 470

Query: 472 KREAYQILREMRKNGLNPDAVTWRIL 497
             +A+ + +EM+  G+ PD  T+ IL
Sbjct: 471 VEKAFLLFQEMKSVGVIPDVYTYTIL 496



 Score = 45.8 bits (107), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 45/221 (20%), Positives = 86/221 (38%), Gaps = 15/221 (6%)

Query: 282 LNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQV 341
           LN ++   C+ G   +AL+ L  +    +  P   T+  ++  L   G++     +  + 
Sbjct: 175 LNVIVRKCCRHGAWAKALEELGRLKDFGY-RPSGATYNALVQVLATAGQMDMGFRVQKE- 232

Query: 342 MPQRGYSPGIVTYNAVLRGLFRLRRVEEA-----KEVFNCMLGIGVVADSTTYAIVIDGL 396
           M + G+     T     + L +  R  +A     +E F          D+     +I GL
Sbjct: 233 MSELGFCTDKFTVGCFAQALCKEGRWSDALVMIEREDFK--------LDTVLCTQMISGL 284

Query: 397 CESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNI 456
            E++  DEA  F   +   S I +   Y  ++ G  +  ++      +  +++ G  PN 
Sbjct: 285 MEASLFDEAISFLHRMRCNSCIPNVVTYRTLLAGFLKKKQLGWCKRIISMMMNEGCNPNP 344

Query: 457 VCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
             +N ++   C       AY++L  M   G  P  V + I 
Sbjct: 345 SLFNSLVHSYCNARDYPYAYKLLNRMAGCGCPPGYVVYNIF 385


>gi|296088147|emb|CBI35592.3| unnamed protein product [Vitis vinifera]
          Length = 883

 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 131/466 (28%), Positives = 228/466 (48%), Gaps = 8/466 (1%)

Query: 33  TTLIHGYCRTGEMDVAYKVFDEM-RHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLW 91
           T+L+   CR  ++  A++VF++M +     PNS+TYS+L+ G+     +E A    F+L 
Sbjct: 233 TSLVLANCRRDDLGEAFRVFEKMSKEENCRPNSVTYSILIHGLCEAGRLEEA----FQLK 288

Query: 92  ERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCR 151
           + M E+     +   +  L+ + C  G  ++  ++ ++M     V        +ID LCR
Sbjct: 289 QEMVEK-GCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCR 347

Query: 152 SGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHT 211
            G+   A+ V   M K GL P ++++N++++G CK G  + A+QLL    +    P+  T
Sbjct: 348 EGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRT 407

Query: 212 YKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFML 271
           Y  L+EGLC  S   KA  +L+ ++    +      NI +   C         N+   M 
Sbjct: 408 YNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMN 467

Query: 272 QTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRI 331
               +PD  T   +I+G CK+GR+E+A  +L  MV  K  + D VTFT +I G   +G+ 
Sbjct: 468 SAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVK-KGISLDEVTFTALIDGHCKIGKA 526

Query: 332 QEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAI 391
           ++   L   ++  R  +    T+N  L  L +  ++ EA  +   M+  G+V    T+ I
Sbjct: 527 KDVCFLFENMVENRCLTTA-HTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTI 585

Query: 392 VIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 451
           +I+G C + +   + +  + +       + Y Y  +I GLC +G++ EA   L+ +   G
Sbjct: 586 LIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFG 645

Query: 452 VTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           V+PN   Y V++    K      A+QI+  M KNG  P++  +  L
Sbjct: 646 VSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSAL 691



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 138/516 (26%), Positives = 231/516 (44%), Gaps = 29/516 (5%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R+ EA +L  +M  +G  P+  +YT LI   C  G  D A K+ DEM     +PN
Sbjct: 275 LCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPN 334

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             TY++L+  + R   +E AN +  K+ +       L      F  L++  C+EG+V   
Sbjct: 335 VHTYTILIDRLCREGKIEEANGVFRKMLKH-----GLCPGIITFNALINGYCKEGWVVSA 389

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           F++   M +G           +++ LCR  +++ A  ++  +   GL P  V+YN +V G
Sbjct: 390 FQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDG 449

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK G    A+ +       G  P   T+  L++GLC    LE+A  +L  M+ K     
Sbjct: 450 FCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLD 509

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                  +   C I    ++  +   M++ +C     T N  ++   K  ++ EA  +L 
Sbjct: 510 EVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLG 569

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            M+      P  VT T +I G    G    +L +L + M Q G SP + TY  ++ GL  
Sbjct: 570 KMMKYGL-VPSVVTHTILIEGHCRAGETALSLKML-ERMKQAGCSPNVYTYTIIINGLCN 627

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
             RVEEA+ +   M   GV  +  TYA+++    ++ +LD A +    +V      ++++
Sbjct: 628 NGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHI 687

Query: 424 YAAMIKG------------LCRSGKIHEAVHFLYELVDSGVTPNIV---------CYNVV 462
           Y+A++ G            L  +G + +A     E  D+    N +          YN +
Sbjct: 688 YSALLSGFVLSNTAIGARALSSTGDL-DARSLSSEENDNNCLSNEIKKCGVPTEDLYNFL 746

Query: 463 IDGACKLSMKREAYQILREMRKNGLNPDAVTWRILD 498
           + G CK     EA Q+ ++M K+GL PD     I++
Sbjct: 747 VVGLCKEGRIIEADQLTQDMVKHGLFPDKAISSIIE 782



 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 125/511 (24%), Positives = 227/511 (44%), Gaps = 29/511 (5%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D+LC   ++ EA+ +F  M   G  P ++++  LI+GYC+ G +  A+++   M     
Sbjct: 342 IDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNC 401

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN  TY+ L+ G+ R     +A +L+     R   +  L  +   +  LVD  C+EG +
Sbjct: 402 KPNIRTYNELMEGLCRVSKSYKAFLLL-----RRVVDNGLLPDRVTYNILVDGFCKEGQL 456

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           N  F I   M       + F    +ID LC+ GR   A+ ++  M K+G++   V++ ++
Sbjct: 457 NMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTAL 516

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G CK G       L E  ++   L + HT+   ++ L  +  L +A  +L  M+    
Sbjct: 517 IDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGL 576

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           V       I +   C        L +L  M Q  C P+V T   +ING C  GR+EEA  
Sbjct: 577 VPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAET 636

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +L  M +    +P+  T+  ++   +  GR+  A  ++   M + G  P    Y+A+L G
Sbjct: 637 ILFSMSSFGV-SPNHFTYAVLVKAHVKAGRLDRAFQIV-STMVKNGCQPNSHIYSALLSG 694

Query: 361 L-----------------FRLRRVEEAKEVFNCM---LGIGVVADSTTYAIVIDGLCESN 400
                                R +   +   NC+   +    V     Y  ++ GLC+  
Sbjct: 695 FVLSNTAIGARALSSTGDLDARSLSSEENDNNCLSNEIKKCGVPTEDLYNFLVVGLCKEG 754

Query: 401 QLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYN 460
           ++ EA +   D+V      D  + +++I+  C++ K    + F+  ++D+   P+   Y 
Sbjct: 755 RIIEADQLTQDMVKHGLFPDKAI-SSIIEHYCKTCKYDNCLEFMKLVLDNKFVPSFASYC 813

Query: 461 VVIDGACKLSMKREAYQILREM-RKNGLNPD 490
            VI G       +EA +++ ++ R  G+  +
Sbjct: 814 WVIHGLRNEGRVQEAQKLVSDLVRHTGIEEE 844



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 126/424 (29%), Positives = 198/424 (46%), Gaps = 14/424 (3%)

Query: 88  FKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFA-----C 142
           F ++ RM  E    +    +  +V++LC+ G+V      A +M   K +   F      C
Sbjct: 179 FLVYRRMVNE-GFVLGGIDYRTVVNALCKNGFVQ-----AAEMFCCKVLRLGFGLDTHVC 232

Query: 143 GHMIDSLCRSGRNHGASRVVYVMRKR-GLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGI 201
             ++ + CR      A RV   M K     P+ V+Y+ ++HGLC+ G    A+QL +E +
Sbjct: 233 TSLVLANCRRDDLGEAFRVFEKMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMV 292

Query: 202 QFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPT 261
           + G  PS  TY VL++  C     +KA K+L  M +K  V       I +  LC      
Sbjct: 293 EKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIE 352

Query: 262 ELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTI 321
           E   V   ML+    P +IT N +ING+CK G +  A ++L+ M  G  C P+  T+  +
Sbjct: 353 EANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGN-CKPNIRTYNEL 411

Query: 322 IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG 381
           + GL  V +  +A  LL +V+   G  P  VTYN ++ G  +  ++  A  +FN M   G
Sbjct: 412 MEGLCRVSKSYKAFLLLRRVV-DNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAG 470

Query: 382 VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAV 441
           +  D  T+  +IDGLC+  +L++A      +V      D   + A+I G C+ GK  +  
Sbjct: 471 LEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVC 530

Query: 442 HFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLH 501
                +V++        +N  +D   K     EA  +L +M K GL P  VT  IL + H
Sbjct: 531 FLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGH 590

Query: 502 GNRG 505
              G
Sbjct: 591 CRAG 594



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 109/467 (23%), Positives = 219/467 (46%), Gaps = 8/467 (1%)

Query: 32  YTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLW 91
           Y+TL+    +     VA+ V+  M + G +   + Y  +V  + +   V+ A +   K+ 
Sbjct: 162 YSTLLMCLAKLNMGFVAFLVYRRMVNEGFVLGGIDYRTVVNALCKNGFVQAAEMFCCKVL 221

Query: 92  ERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVN-EEFACGHMIDSLC 150
                     ++     +LV + CR   + E FR+ E M + ++          +I  LC
Sbjct: 222 RL-----GFGLDTHVCTSLVLANCRRDDLGEAFRVFEKMSKEENCRPNSVTYSILIHGLC 276

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
            +GR   A ++   M ++G  PS  +Y  ++   C  G   +A ++L+E      +P+ H
Sbjct: 277 EAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVH 336

Query: 211 TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM 270
           TY +L++ LC E  +E+A  V + ML           N  +   C          +L  M
Sbjct: 337 TYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVM 396

Query: 271 LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR 330
            +  C+P++ T N ++ G C++ +  +A  +L  +V      PD VT+  ++ G    G+
Sbjct: 397 EKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGL-LPDRVTYNILVDGFCKEGQ 455

Query: 331 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYA 390
           +  A N+ +  M   G  P   T+ A++ GL +L R+E+A  +   M+  G+  D  T+ 
Sbjct: 456 LNMAFNI-FNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFT 514

Query: 391 IVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 450
            +IDG C+  +  +    ++++V    +   + +   +  L +  K++EA   L +++  
Sbjct: 515 ALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKY 574

Query: 451 GVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           G+ P++V + ++I+G C+      + ++L  M++ G +P+  T+ I+
Sbjct: 575 GLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTII 621



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 106/254 (41%), Gaps = 26/254 (10%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   RV EA  + F M S G  PN  +Y  L+  + + G +D A+++   M   G 
Sbjct: 622 INGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGC 681

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLM----FKLWERMKEEEDLSVNNAAFAN------- 109
            PNS  YS L+ G + +     A  L             EE D    N   +N       
Sbjct: 682 QPNSHIYSALLSGFVLSNTAIGARALSSTGDLDARSLSSEEND----NNCLSNEIKKCGV 737

Query: 110 --------LVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRV 161
                   LV  LC+EG + E  ++ +DM +   +  + A   +I+  C++ +       
Sbjct: 738 PTEDLYNFLVVGLCKEGRIIEADQLTQDMVK-HGLFPDKAISSIIEHYCKTCKYDNCLEF 796

Query: 162 VYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCG 221
           + ++      PS  SY  ++HGL   G    A +L+ + ++   +  E      +E L  
Sbjct: 797 MKLVLDNKFVPSFASYCWVIHGLRNEGRVQEAQKLVSDLVRHTGIEEEVEVTPSIEFLMK 856

Query: 222 ES--DLEKARKVLQ 233
           E   D +K  K+++
Sbjct: 857 EEEDDPDKCLKLIK 870


>gi|145360025|ref|NP_179305.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122223754|sp|Q0WPZ6.1|PP158_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g17140
 gi|110737729|dbj|BAF00803.1| hypothetical protein [Arabidopsis thaliana]
 gi|330251496|gb|AEC06590.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 874

 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 131/498 (26%), Positives = 239/498 (47%), Gaps = 34/498 (6%)

Query: 27  PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVL 86
           P+V  Y  L+    +   ++    ++ +M  CG+ P + T+++L+R +  +  V+ A   
Sbjct: 110 PSVYLYNLLLESCIKERRVEFVSWLYKDMVLCGIAPQTYTFNLLIRALCDSSCVDAAR-- 167

Query: 87  MFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMI 146
             +L++ M E+     N   F  LV   C+ G  ++   +   M     +  +     ++
Sbjct: 168 --ELFDEMPEK-GCKPNEFTFGILVRGYCKAGLTDKGLELLNAMESFGVLPNKVIYNTIV 224

Query: 147 DSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL 206
            S CR GRN  + ++V  MR+ GL P +V++NS +  LCK G  + A ++  +     YL
Sbjct: 225 SSFCREGRNDDSEKMVEKMREEGLVPDIVTFNSRISALCKEGKVLDASRIFSDMELDEYL 284

Query: 207 ----PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTE 262
               P+  TY ++++G C    LE A+ + + +    D+   +  NI+L+ L       E
Sbjct: 285 GLPRPNSITYNLMLKGFCKVGLLEDAKTLFESIRENDDLASLQSYNIWLQGLVRHGKFIE 344

Query: 263 LLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTII 322
              VL  M      P + + N +++G CK+G + +A  ++  M     C PDAVT+  ++
Sbjct: 345 AETVLKQMTDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVC-PDAVTYGCLL 403

Query: 323 FGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGV 382
            G  +VG++  A +LL ++M +    P   T N +L  L+++ R+ EA+E+   M   G 
Sbjct: 404 HGYCSVGKVDAAKSLLQEMM-RNNCLPNAYTCNILLHSLWKMGRISEAEELLRKMNEKGY 462

Query: 383 VADSTTYAIVIDGLCESNQLDEAKR----------------------FWDDIVWPSN-IH 419
             D+ T  I++DGLC S +LD+A                          DD +  +N + 
Sbjct: 463 GLDTVTCNIIVDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVDDSLIENNCLP 522

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           D   Y+ ++ GLC++G+  EA +   E++   + P+ V YN+ I   CK      A+++L
Sbjct: 523 DLITYSTLLNGLCKAGRFAEAKNLFAEMMGEKLQPDSVAYNIFIHHFCKQGKISSAFRVL 582

Query: 480 REMRKNGLNPDAVTWRIL 497
           ++M K G +    T+  L
Sbjct: 583 KDMEKKGCHKSLETYNSL 600



 Score =  191 bits (485), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 143/524 (27%), Positives = 234/524 (44%), Gaps = 40/524 (7%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC  S V  A +LF +M  +G  PN  ++  L+ GYC+ G  D   ++ + M   GVLPN
Sbjct: 157 LCDSSCVDAARELFDEMPEKGCKPNEFTFGILVRGYCKAGLTDKGLELLNAMESFGVLPN 216

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            + Y+ +V    R    E  N    K+ E+M+EE  L  +   F + + +LC+EG V + 
Sbjct: 217 KVIYNTIVSSFCR----EGRNDDSEKMVEKMREE-GLVPDIVTFNSRISALCKEGKVLDA 271

Query: 124 FRIAEDM--------PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLV 175
            RI  DM        P+  S+        M+   C+ G    A  +   +R+     SL 
Sbjct: 272 SRIFSDMELDEYLGLPRPNSITYNL----MLKGFCKVGLLEDAKTLFESIRENDDLASLQ 327

Query: 176 SYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM 235
           SYN  + GL +HG  + A  +L++    G  PS ++Y +L++GLC    L  A+ ++  M
Sbjct: 328 SYNIWLQGLVRHGKFIEAETVLKQMTDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLM 387

Query: 236 LSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 295
                          L   C +       ++L  M++  C P+  T N +++   KMGRI
Sbjct: 388 KRNGVCPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWKMGRI 447

Query: 296 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLL-------YQVMPQRGYS 348
            EA ++L  M    +   D VT   I+ GL   G + +A+ ++          +   G S
Sbjct: 448 SEAEELLRKMNEKGY-GLDTVTCNIIVDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNS 506

Query: 349 ---------------PGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVI 393
                          P ++TY+ +L GL +  R  EAK +F  M+G  +  DS  Y I I
Sbjct: 507 YIGLVDDSLIENNCLPDLITYSTLLNGLCKAGRFAEAKNLFAEMMGEKLQPDSVAYNIFI 566

Query: 394 DGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVT 453
              C+  ++  A R   D+           Y ++I GL    +I E    + E+ + G++
Sbjct: 567 HHFCKQGKISSAFRVLKDMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMKEKGIS 626

Query: 454 PNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           PNI  YN  I   C+     +A  +L EM +  + P+  +++ L
Sbjct: 627 PNICTYNTAIQYLCEGEKVEDATNLLDEMMQKNIAPNVFSFKYL 670



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 140/516 (27%), Positives = 241/516 (46%), Gaps = 40/516 (7%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           RV     L+ DM   G  P   ++  LI   C +  +D A ++FDEM   G  PN  T+ 
Sbjct: 127 RVEFVSWLYKDMVLCGIAPQTYTFNLLIRALCDSSCVDAARELFDEMPEKGCKPNEFTFG 186

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
           +LVRG  +    ++   L+  +     E   +  N   +  +V S CREG  ++  ++ E
Sbjct: 187 ILVRGYCKAGLTDKGLELLNAM-----ESFGVLPNKVIYNTIVSSFCREGRNDDSEKMVE 241

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKR---GLT-PSLVSYNSIVHGL 184
            M +   V +       I +LC+ G+   ASR+   M      GL  P+ ++YN ++ G 
Sbjct: 242 KMREEGLVPDIVTFNSRISALCKEGKVLDASRIFSDMELDEYLGLPRPNSITYNLMLKGF 301

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
           CK G    A  L E   +   L S  +Y + ++GL       +A  VL+ M  K      
Sbjct: 302 CKVGLLEDAKTLFESIRENDDLASLQSYNIWLQGLVRHGKFIEAETVLKQMTDKGIGPSI 361

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
              NI +  LC +   ++   ++  M +    PD +T   +++G+C +G+++ A  +L +
Sbjct: 362 YSYNILMDGLCKLGMLSDAKTIVGLMKRNGVCPDAVTYGCLLHGYCSVGKVDAAKSLLQE 421

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
           M+    C P+A T   ++  L  +GRI EA  LL + M ++GY    VT N ++ GL   
Sbjct: 422 MMRNN-CLPNAYTCNILLHSLWKMGRISEAEELLRK-MNEKGYGLDTVTCNIIVDGLCGS 479

Query: 365 RRVEEAKEVFNCM----------LG---IGVVADS----------TTYAIVIDGLCESNQ 401
             +++A E+   M          LG   IG+V DS           TY+ +++GLC++ +
Sbjct: 480 GELDKAIEIVKGMRVHGSAALGNLGNSYIGLVDDSLIENNCLPDLITYSTLLNGLCKAGR 539

Query: 402 LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNV 461
             EAK  + +++      D+  Y   I   C+ GKI  A   L ++   G   ++  YN 
Sbjct: 540 FAEAKNLFAEMMGEKLQPDSVAYNIFIHHFCKQGKISSAFRVLKDMEKKGCHKSLETYNS 599

Query: 462 VIDGACKLSMKREAYQI---LREMRKNGLNPDAVTW 494
           +I G   L +K + ++I   + EM++ G++P+  T+
Sbjct: 600 LILG---LGIKNQIFEIHGLMDEMKEKGISPNICTY 632



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 133/569 (23%), Positives = 252/569 (44%), Gaps = 72/569 (12%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +   C   R  ++ K+   M+  G VP++V++ + I   C+ G++  A ++F +M     
Sbjct: 224 VSSFCREGRNDDSEKMVEKMREEGLVPDIVTFNSRISALCKEGKVLDASRIFSDMELDEY 283

Query: 61  L----PNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCR 116
           L    PNS+TY+++++G  +   +E A  L    +E ++E +DL+ +  ++   +  L R
Sbjct: 284 LGLPRPNSITYNLMLKGFCKVGLLEDAKTL----FESIRENDDLA-SLQSYNIWLQGLVR 338

Query: 117 EGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVS 176
            G   E   + + M         ++   ++D LC+ G    A  +V +M++ G+ P  V+
Sbjct: 339 HGKFIEAETVLKQMTDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVCPDAVT 398

Query: 177 YNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFML 236
           Y  ++HG C  G    A  LL+E ++   LP+ +T  +L+  L     + +A ++L+ M 
Sbjct: 399 YGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWKMGRISEAEELLRKMN 458

Query: 237 SKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM-----------------------LQT 273
            K     T  CNI +  LC      + + ++  M                       ++ 
Sbjct: 459 EKGYGLDTVTCNIIVDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVDDSLIEN 518

Query: 274 QCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQE 333
            C PD+IT +T++NG CK GR  EA  +  +M+  K   PD+V +   I      G+I  
Sbjct: 519 NCLPDLITYSTLLNGLCKAGRFAEAKNLFAEMMGEKL-QPDSVAYNIFIHHFCKQGKISS 577

Query: 334 ALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVI 393
           A  +L + M ++G    + TYN+++ GL    ++ E   + + M   G+  +  TY   I
Sbjct: 578 AFRVL-KDMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMKEKGISPNICTYNTAI 636

Query: 394 DGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR-------------------- 433
             LCE  ++++A    D+++  +   + + +  +I+  C+                    
Sbjct: 637 QYLCEGEKVEDATNLLDEMMQKNIAPNVFSFKYLIEAFCKVPDFDMAQEVFETAVSICGQ 696

Query: 434 --------------SGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
                         +G++ +A   L  ++D G       Y  +++  CK      A  IL
Sbjct: 697 KEGLYSLMFNELLAAGQLLKATELLEAVLDRGFELGTFLYKDLVESLCKKDELEVASGIL 756

Query: 480 REM--RKNGLNPDAVTWRILDKLHGNRGN 506
            +M  R  G +P A+   ++D L G  GN
Sbjct: 757 HKMIDRGYGFDPAALM-PVIDGL-GKMGN 783



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 108/436 (24%), Positives = 190/436 (43%), Gaps = 31/436 (7%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           MD LC L  + +A  +   MK  G  P+ V+Y  L+HGYC  G++D A  +  EM     
Sbjct: 368 MDGLCKLGMLSDAKTIVGLMKRNGVCPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNC 427

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           LPN+ T ++L+  + +   +  A  L+ K+ E+    + ++ N      +VD LC  G +
Sbjct: 428 LPNAYTCNILLHSLWKMGRISEAEELLRKMNEKGYGLDTVTCN-----IIVDGLCGSGEL 482

Query: 121 NEVFRIAEDMP-----------------------QGKSVNEEFACGHMIDSLCRSGRNHG 157
           ++   I + M                        +   + +      +++ LC++GR   
Sbjct: 483 DKAIEIVKGMRVHGSAALGNLGNSYIGLVDDSLIENNCLPDLITYSTLLNGLCKAGRFAE 542

Query: 158 ASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVE 217
           A  +   M    L P  V+YN  +H  CK G    A+++L++  + G   S  TY  L+ 
Sbjct: 543 AKNLFAEMMGEKLQPDSVAYNIFIHHFCKQGKISSAFRVLKDMEKKGCHKSLETYNSLIL 602

Query: 218 GLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQP 277
           GL  ++ + +   ++  M  K         N  ++ LC  +   +  N+L  M+Q    P
Sbjct: 603 GLGIKNQIFEIHGLMDEMKEKGISPNICTYNTAIQYLCEGEKVEDATNLLDEMMQKNIAP 662

Query: 278 DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNL 337
           +V +   +I  FCK+   + A +V    V+   C      ++ +   LL  G++ +A  L
Sbjct: 663 NVFSFKYLIEAFCKVPDFDMAQEVFETAVS--ICGQKEGLYSLMFNELLAAGQLLKATEL 720

Query: 338 LYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLC 397
           L  V+  RG+  G   Y  ++  L +   +E A  + + M+  G   D      VIDGL 
Sbjct: 721 LEAVL-DRGFELGTFLYKDLVESLCKKDELEVASGILHKMIDRGYGFDPAALMPVIDGLG 779

Query: 398 ESNQLDEAKRFWDDIV 413
           +     EA  F D ++
Sbjct: 780 KMGNKKEANSFADKMM 795



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 90/301 (29%), Positives = 156/301 (51%), Gaps = 10/301 (3%)

Query: 207 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 266
           PS + Y +L+E    E  +E    + + M+      +T   N+ +RALC          +
Sbjct: 110 PSVYLYNLLLESCIKERRVEFVSWLYKDMVLCGIAPQTYTFNLLIRALCDSSCVDAAREL 169

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
              M +  C+P+  T   ++ G+CK G  ++ L++LN M +     P+ V + TI+    
Sbjct: 170 FDEMPEKGCKPNEFTFGILVRGYCKAGLTDKGLELLNAMESFGVL-PNKVIYNTIVSSFC 228

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCM-----LGIG 381
             GR  ++  ++ + M + G  P IVT+N+ +  L +  +V +A  +F+ M     LG+ 
Sbjct: 229 REGRNDDSEKMV-EKMREEGLVPDIVTFNSRISALCKEGKVLDASRIFSDMELDEYLGL- 286

Query: 382 VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAV 441
              +S TY +++ G C+   L++AK  ++ I    ++     Y   ++GL R GK  EA 
Sbjct: 287 PRPNSITYNLMLKGFCKVGLLEDAKTLFESIRENDDLASLQSYNIWLQGLVRHGKFIEAE 346

Query: 442 HFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLH 501
             L ++ D G+ P+I  YN+++DG CKL M  +A  I+  M++NG+ PDAVT+  L  LH
Sbjct: 347 TVLKQMTDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVCPDAVTYGCL--LH 404

Query: 502 G 502
           G
Sbjct: 405 G 405



 Score = 46.6 bits (109), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 77/162 (47%), Gaps = 6/162 (3%)

Query: 356 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAI-VIDGLCESNQLDEAKRFWDDIV- 413
            + R L R +  EE +E+ N +L   +     +  + V+    +SN +D+A   +  +  
Sbjct: 44  TIARILVRAKMHEEIQELHNLILSSSIQKTKLSSLLSVVSIFAKSNHIDKAFPQFQLVRS 103

Query: 414 -WPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY-ELVDSGVTPNIVCYNVVIDGACKLSM 471
            +P N    Y+Y  +++   +  ++ E V +LY ++V  G+ P    +N++I   C  S 
Sbjct: 104 RFPENKPSVYLYNLLLESCIKERRV-EFVSWLYKDMVLCGIAPQTYTFNLLIRALCDSSC 162

Query: 472 KREAYQILREMRKNGLNPDAVTWRILDKLHGNRG-NDFGLRI 512
              A ++  EM + G  P+  T+ IL + +   G  D GL +
Sbjct: 163 VDAARELFDEMPEKGCKPNEFTFGILVRGYCKAGLTDKGLEL 204


>gi|297607630|ref|NP_001060305.2| Os07g0621100 [Oryza sativa Japonica Group]
 gi|255677977|dbj|BAF22219.2| Os07g0621100 [Oryza sativa Japonica Group]
          Length = 734

 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 139/505 (27%), Positives = 243/505 (48%), Gaps = 57/505 (11%)

Query: 10  VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMR---HCGVLPNSLT 66
           +GEA  L   + S   V + VSY T++   CR G  D A  +   M    H    PN+++
Sbjct: 61  LGEATSLLDALPS---VRDAVSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVS 117

Query: 67  YSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRI 126
           Y+VL+R +   R  ++A  L+     R      +  +   +  L+  LC    V++   +
Sbjct: 118 YTVLMRALCADRLADQAVGLL-----RSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVEL 172

Query: 127 AEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK 186
             +M +            ++   C+SGR     +V   M ++G+ P +V Y  ++  LCK
Sbjct: 173 MGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCK 232

Query: 187 HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRI 246
            G   +A+ +++  ++ G  P+  TY VL+  +C E  +++A  VL+ M S+K V     
Sbjct: 233 VGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKM-SEKGV----- 286

Query: 247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV 306
                                         PDV+T NT+I G   +  ++EA+ +L +MV
Sbjct: 287 -----------------------------APDVVTYNTLIKGLSDVLEMDEAMWLLEEMV 317

Query: 307 AGK-FCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLR 365
            GK    P+ VTF ++I GL ++GR+++A  +   +M + G    +VTYN ++ GL R+ 
Sbjct: 318 RGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQV-RAMMEETGCMVNLVTYNLLIGGLLRVH 376

Query: 366 RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFW----DDIVWPSNIHDN 421
           +V +A E+ + M  +G+  DS TY+I+I G C+  Q+D A+       D  + P   H  
Sbjct: 377 KVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFH-- 434

Query: 422 YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
             Y  ++  +C  G +  A +   E+ D+    ++V Y+ +I GACK    + A ++L+ 
Sbjct: 435 --YIPLLVAMCEQGMMERARNLFNEM-DNNFPLDVVAYSTMIHGACKAGDLKTAKELLKS 491

Query: 482 MRKNGLNPDAVTWRILDKLHGNRGN 506
           +   GL PDAVT+ I+  +    G+
Sbjct: 492 IVDEGLTPDAVTYSIVINMFAKSGD 516



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 129/507 (25%), Positives = 241/507 (47%), Gaps = 80/507 (15%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M  LC      +A  L   M+S G   +VV+Y TLI G C   E+D A ++  EM   G+
Sbjct: 122 MRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGI 181

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN + YS L++G  ++   E    +  ++ E+  E + +      +  L+DSLC+ G  
Sbjct: 182 EPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVV-----MYTGLIDSLCKVG-- 234

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                                         ++ + HG   V+ +M +RGL P++V+YN +
Sbjct: 235 ------------------------------KAKKAHG---VMDMMVRRGLEPNVVTYNVL 261

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++ +CK G    A  +L++  + G  P   TY  L++GL    ++++A  +L+ M+  K+
Sbjct: 262 INCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKN 321

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           +                                  +P+V+T N+VI G C +GR+ +A +
Sbjct: 322 I---------------------------------VKPNVVTFNSVIQGLCDIGRMRQAFQ 348

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           V   M+    C  + VT+  +I GLL V ++++A+ L+ + M   G  P   TY+ +++G
Sbjct: 349 V-RAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDE-MTSLGLEPDSFTYSILIKG 406

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD--DIVWPSNI 418
             ++ +V+ A+++ + M   G+  +   Y  ++  +CE   ++ A+  ++  D  +P ++
Sbjct: 407 FCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEMDNNFPLDV 466

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI 478
                Y+ MI G C++G +  A   L  +VD G+TP+ V Y++VI+   K      A  +
Sbjct: 467 ---VAYSTMIHGACKAGDLKTAKELLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGV 523

Query: 479 LREMRKNGLNPDAVTWRILDKLHGNRG 505
           L++M  +G  PD   +  L + +  +G
Sbjct: 524 LKQMTASGFLPDVAVFDSLIQGYSTKG 550



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 120/458 (26%), Positives = 226/458 (49%), Gaps = 10/458 (2%)

Query: 27  PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVL 86
           PN VSYT L+   C     D A  +   MR  GV  + +TY  L+RG+    +V++A  L
Sbjct: 113 PNAVSYTVLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVEL 172

Query: 87  MFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMI 146
           M ++ E       +  N   +++L+   C+ G   +V ++  +M +     +      +I
Sbjct: 173 MGEMCE-----SGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLI 227

Query: 147 DSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL 206
           DSLC+ G+   A  V+ +M +RGL P++V+YN +++ +CK G    A  +L++  + G  
Sbjct: 228 DSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVA 287

Query: 207 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC--NIYLRALCLIKNPTELL 264
           P   TY  L++GL    ++++A  +L+ M+  K++ +  +   N  ++ LC I    +  
Sbjct: 288 PDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAF 347

Query: 265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 324
            V   M +T C  +++T N +I G  ++ ++ +A++++++M +     PD+ T++ +I G
Sbjct: 348 QVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGL-EPDSFTYSILIKG 406

Query: 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 384
              + ++  A +LL   M  RG  P +  Y  +L  +     +E A+ +FN M       
Sbjct: 407 FCKMWQVDRAEDLL-STMRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEMDN-NFPL 464

Query: 385 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFL 444
           D   Y+ +I G C++  L  AK     IV      D   Y+ +I    +SG +  A   L
Sbjct: 465 DVVAYSTMIHGACKAGDLKTAKELLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGVL 524

Query: 445 YELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
            ++  SG  P++  ++ +I G        +  +++REM
Sbjct: 525 KQMTASGFLPDVAVFDSLIQGYSTKGEINKVLELIREM 562



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 106/438 (24%), Positives = 198/438 (45%), Gaps = 51/438 (11%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC  + V +A +L  +M   G  PNVV Y++L+ GYC++G  +   KVF EM   G+ P+
Sbjct: 160 LCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPD 219

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV--- 120
            + Y+ L+  + +    ++A+ +M  +  R      L  N   +  L++ +C+EG V   
Sbjct: 220 VVMYTGLIDSLCKVGKAKKAHGVMDMMVRR-----GLEPNVVTYNVLINCMCKEGSVKEA 274

Query: 121 --------------------------------NEVFRIAEDMPQGKSVNEE--FACGHMI 146
                                           +E   + E+M +GK++ +        +I
Sbjct: 275 IGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVI 334

Query: 147 DSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL 206
             LC  GR   A +V  +M + G   +LV+YN ++ GL +     +A +L++E    G  
Sbjct: 335 QGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLE 394

Query: 207 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALC---LIKNPTEL 263
           P   TY +L++G C    +++A  +L  M  +            L A+C   +++    L
Sbjct: 395 PDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQGMMERARNL 454

Query: 264 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF 323
            N     +      DV+  +T+I+G CK G ++ A ++L  +V  +   PDAVT++ +I 
Sbjct: 455 FN----EMDNNFPLDVVAYSTMIHGACKAGDLKTAKELLKSIV-DEGLTPDAVTYSIVIN 509

Query: 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 383
                G ++ A  +L Q M   G+ P +  ++++++G      + +  E+   M+   + 
Sbjct: 510 MFAKSGDMEAANGVLKQ-MTASGFLPDVAVFDSLIQGYSTKGEINKVLELIREMITKNIA 568

Query: 384 ADSTTYAIVIDGLCESNQ 401
            DS   + +   L  SN+
Sbjct: 569 LDSKIISTLSTSLVASNE 586



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 96/347 (27%), Positives = 158/347 (45%), Gaps = 11/347 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC + +  +AH +   M  RG  PNVV+Y  LI+  C+ G +  A  V  +M   GV
Sbjct: 227 IDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGV 286

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TY+ L++G+    DV   +  M+ L E ++ +  +  N   F +++  LC  G +
Sbjct: 287 APDVVTYNTLIKGL---SDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRM 343

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            + F++   M +   +        +I  L R  +   A  ++  M   GL P   +Y+ +
Sbjct: 344 RQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSIL 403

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G CK     RA  LL      G  P    Y  L+  +C +  +E+AR +   M +   
Sbjct: 404 IKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEMDNNFP 463

Query: 241 VDRTRICNIYLRALCL---IKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
           +D      + +   C    +K   ELL  +V        PD +T + VIN F K G +E 
Sbjct: 464 LDVVAYSTM-IHGACKAGDLKTAKELLKSIV---DEGLTPDAVTYSIVINMFAKSGDMEA 519

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ 344
           A  VL  M A  F  PD   F ++I G    G I + L L+ +++ +
Sbjct: 520 ANGVLKQMTASGFL-PDVAVFDSLIQGYSTKGEINKVLELIREMITK 565


>gi|449521772|ref|XP_004167903.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Cucumis sativus]
          Length = 645

 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 131/454 (28%), Positives = 222/454 (48%), Gaps = 22/454 (4%)

Query: 15  KLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGV 74
           +++ +M S G  P+V+++ TLI G CR G++  A ++FDEMR  G++P  + Y++L+RG+
Sbjct: 168 RIYEEMISNGLSPSVITFGTLIDGCCRQGDLLRAQEMFDEMRVKGIVPTVIVYTILIRGL 227

Query: 75  LRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGK 134
                +E A  +      R   E  +  N   +  L+D  C+     +  R+ +DM    
Sbjct: 228 CSDNKIEEAESM-----HRAMREVGVYPNVYTYNTLMDGYCKLANAKQALRLYQDMLGEG 282

Query: 135 SVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAY 194
            V +    G +ID LC+ G    A  +   M K  +TP++  YNS++   CK G    A 
Sbjct: 283 LVPDVVTFGILIDGLCKFGEMKAARNLFVNMIKFSVTPNIAVYNSLIDAYCKVGDVSEAM 342

Query: 195 QLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRAL 254
            L  E  +F   P   TY +L+ GLC  S  E+A  + + M  +  +  +   N  +   
Sbjct: 343 ALFLELERFEVSPDVFTYSILIRGLCSVSRTEEAGNIFEKMTKEGILANSVTYNSLIDGC 402

Query: 255 CLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPD 314
           C      + L +   M +   +P+VIT +T+I+G+CK+  ++ A+ + ++MV  K  +PD
Sbjct: 403 CKEGKMDKALEICSQMTENGVEPNVITFSTLIDGYCKIRNLQAAMGIYSEMVI-KSLSPD 461

Query: 315 AVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVF 374
            VT+T +I G    G ++EAL  LY  M   G +P   T + +L GL +  ++ +A E+F
Sbjct: 462 VVTYTAMIDGHCKYGSMKEALK-LYSDMLDNGITPNCYTISCLLDGLCKDGKISDALELF 520

Query: 375 N---------CMLGIGVVADSTT----YAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
                     C +  G    S T    Y  +I GLC+  Q  +A + + D+       D 
Sbjct: 521 TEKIEFQTPRCNVDAGGSKPSLTNHVAYTALIHGLCQDGQFSKAVKLFSDMRRYGLQPDE 580

Query: 422 YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN 455
            +Y  M++GL +   I   +H   +++  GV PN
Sbjct: 581 VIYVVMLRGLFQVKYILMMLH--ADMLKFGVIPN 612



 Score =  181 bits (459), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 111/429 (25%), Positives = 208/429 (48%), Gaps = 10/429 (2%)

Query: 70  LVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAED 129
           LV+ ++++     A  L F    R+K  +        +  L+  LC+   V E   +   
Sbjct: 84  LVQNLVKSHKPYHACQLAFSELSRLKSSK---FTPNVYGELIIVLCKMELVEEALSMYHK 140

Query: 130 MPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG 189
           +    ++    AC  ++  L ++GR     R+   M   GL+PS++++ +++ G C+ G 
Sbjct: 141 VGAALTIQ---ACNVLLYVLVKTGRFELLWRIYEEMISNGLSPSVITFGTLIDGCCRQGD 197

Query: 190 CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNI 249
            +RA ++ +E    G +P+   Y +L+ GLC ++ +E+A  + + M            N 
Sbjct: 198 LLRAQEMFDEMRVKGIVPTVIVYTILIRGLCSDNKIEEAESMHRAMREVGVYPNVYTYNT 257

Query: 250 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK 309
            +   C + N  + L +   ML     PDV+T   +I+G CK G ++ A  +  +M+  K
Sbjct: 258 LMDGYCKLANAKQALRLYQDMLGEGLVPDVVTFGILIDGLCKFGEMKAARNLFVNMI--K 315

Query: 310 FC-APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE 368
           F   P+   + ++I     VG + EA+ L  + + +   SP + TY+ ++RGL  + R E
Sbjct: 316 FSVTPNIAVYNSLIDAYCKVGDVSEAMALFLE-LERFEVSPDVFTYSILIRGLCSVSRTE 374

Query: 369 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI 428
           EA  +F  M   G++A+S TY  +IDG C+  ++D+A      +       +   ++ +I
Sbjct: 375 EAGNIFEKMTKEGILANSVTYNSLIDGCCKEGKMDKALEICSQMTENGVEPNVITFSTLI 434

Query: 429 KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLN 488
            G C+   +  A+    E+V   ++P++V Y  +IDG CK    +EA ++  +M  NG+ 
Sbjct: 435 DGYCKIRNLQAAMGIYSEMVIKSLSPDVVTYTAMIDGHCKYGSMKEALKLYSDMLDNGIT 494

Query: 489 PDAVTWRIL 497
           P+  T   L
Sbjct: 495 PNCYTISCL 503



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 120/491 (24%), Positives = 236/491 (48%), Gaps = 25/491 (5%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           +KS    PNV  Y  LI   C+   M++  +        G        +VL+  +++T  
Sbjct: 108 LKSSKFTPNV--YGELIIVLCK---MELVEEALSMYHKVGAALTIQACNVLLYVLVKTGR 162

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
            E    L+++++E M     LS +   F  L+D  CR+G +     + ++M     V   
Sbjct: 163 FE----LLWRIYEEMISN-GLSPSVITFGTLIDGCCRQGDLLRAQEMFDEMRVKGIVPTV 217

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
                +I  LC   +   A  +   MR+ G+ P++ +YN+++ G CK     +A +L ++
Sbjct: 218 IVYTILIRGLCSDNKIEEAESMHRAMREVGVYPNVYTYNTLMDGYCKLANAKQALRLYQD 277

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
            +  G +P   T+ +L++GLC   +++ AR +   M+         + N  + A C + +
Sbjct: 278 MLGEGLVPDVVTFGILIDGLCKFGEMKAARNLFVNMIKFSVTPNIAVYNSLIDAYCKVGD 337

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
            +E + + + + + +  PDV T + +I G C + R EEA  +   M      A ++VT+ 
Sbjct: 338 VSEAMALFLELERFEVSPDVFTYSILIRGLCSVSRTEEAGNIFEKMTKEGILA-NSVTYN 396

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
           ++I G    G++ +AL +  Q M + G  P ++T++ ++ G  ++R ++ A  +++ M+ 
Sbjct: 397 SLIDGCCKEGKMDKALEICSQ-MTENGVEPNVITFSTLIDGYCKIRNLQAAMGIYSEMVI 455

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
             +  D  TY  +IDG C+   + EA + + D++      + Y  + ++ GLC+ GKI +
Sbjct: 456 KSLSPDVVTYTAMIDGHCKYGSMKEALKLYSDMLDNGITPNCYTISCLLDGLCKDGKISD 515

Query: 440 AVHFLYELVD----------SGVTPNI---VCYNVVIDGACKLSMKREAYQILREMRKNG 486
           A+    E ++           G  P++   V Y  +I G C+     +A ++  +MR+ G
Sbjct: 516 ALELFTEKIEFQTPRCNVDAGGSKPSLTNHVAYTALIHGLCQDGQFSKAVKLFSDMRRYG 575

Query: 487 LNPDAVTWRIL 497
           L PD V + ++
Sbjct: 576 LQPDEVIYVVM 586



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 112/431 (25%), Positives = 185/431 (42%), Gaps = 57/431 (13%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           MD  C L+   +A +L+ DM   G VP+VV++  LI G C+ GEM  A  +F  M    V
Sbjct: 259 MDGYCKLANAKQALRLYQDMLGEGLVPDVVTFGILIDGLCKFGEMKAARNLFVNMIKFSV 318

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN   Y+ L+    +  DV  A  L  +L                              
Sbjct: 319 TPNIAVYNSLIDAYCKVGDVSEAMALFLEL------------------------------ 348

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E F ++ D+         F    +I  LC   R   A  +   M K G+  + V+YNS+
Sbjct: 349 -ERFEVSPDV---------FTYSILIRGLCSVSRTEEAGNIFEKMTKEGILANSVTYNSL 398

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G CK G   +A ++  +  + G  P+  T+  L++G C   +L+ A  +   M+ K  
Sbjct: 399 IDGCCKEGKMDKALEICSQMTENGVEPNVITFSTLIDGYCKIRNLQAAMGIYSEMVIKSL 458

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                     +   C   +  E L +   ML     P+  T++ +++G CK G+I +AL+
Sbjct: 459 SPDVVTYTAMIDGHCKYGSMKEALKLYSDMLDNGITPNCYTISCLLDGLCKDGKISDALE 518

Query: 301 VLNDMVAGKF--CAPDA----------VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYS 348
           +  + +  +   C  DA          V +T +I GL   G+  +A+  L+  M + G  
Sbjct: 519 LFTEKIEFQTPRCNVDAGGSKPSLTNHVAYTALIHGLCQDGQFSKAVK-LFSDMRRYGLQ 577

Query: 349 PGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRF 408
           P  V Y  +LRGLF+++ +     +   ML  GV+ +S  + I+ +   ES  L  A+  
Sbjct: 578 PDEVIYVVMLRGLFQVKYI--LMMLHADMLKFGVIPNSAVHVILCECYQESGFLKSAQNC 635

Query: 409 WDDIVWPSNIH 419
             D+    N+H
Sbjct: 636 SKDL--EENLH 644



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 89/324 (27%), Positives = 161/324 (49%), Gaps = 11/324 (3%)

Query: 178 NSIVHGLCK----HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQ 233
           N +V  L K    +  C  A+  L       + P  + Y  L+  LC    +E+A  +  
Sbjct: 82  NDLVQNLVKSHKPYHACQLAFSELSRLKSSKFTP--NVYGELIIVLCKMELVEEALSMYH 139

Query: 234 FMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMG 293
            + +   +   + CN+ L  L        L  +   M+     P VIT  T+I+G C+ G
Sbjct: 140 KVGAALTI---QACNVLLYVLVKTGRFELLWRIYEEMISNGLSPSVITFGTLIDGCCRQG 196

Query: 294 RIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVT 353
            +  A ++ ++M   K   P  + +T +I GL +  +I+EA ++ ++ M + G  P + T
Sbjct: 197 DLLRAQEMFDEMRV-KGIVPTVIVYTILIRGLCSDNKIEEAESM-HRAMREVGVYPNVYT 254

Query: 354 YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413
           YN ++ G  +L   ++A  ++  MLG G+V D  T+ I+IDGLC+  ++  A+  + +++
Sbjct: 255 YNTLMDGYCKLANAKQALRLYQDMLGEGLVPDVVTFGILIDGLCKFGEMKAARNLFVNMI 314

Query: 414 WPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKR 473
             S   +  VY ++I   C+ G + EA+    EL    V+P++  Y+++I G C +S   
Sbjct: 315 KFSVTPNIAVYNSLIDAYCKVGDVSEAMALFLELERFEVSPDVFTYSILIRGLCSVSRTE 374

Query: 474 EAYQILREMRKNGLNPDAVTWRIL 497
           EA  I  +M K G+  ++VT+  L
Sbjct: 375 EAGNIFEKMTKEGILANSVTYNSL 398


>gi|414887654|tpg|DAA63668.1| TPA: hypothetical protein ZEAMMB73_339081 [Zea mays]
          Length = 1098

 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 143/593 (24%), Positives = 262/593 (44%), Gaps = 104/593 (17%)

Query: 11  GEAHKLFF--DMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           G  H L F  +M   G   N+V+Y  +++GYC  G+ + A ++ D +   G  PN +TY+
Sbjct: 258 GVVHALEFVEEMTKMGVEVNLVAYHAVMNGYCEVGQTNDARRMLDSLPGRGFSPNIVTYT 317

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
           +LV+G    +++E A  ++    + +++ + L V+ A F  +++  C+ G + +  R+  
Sbjct: 318 LLVKGYCNEKNMEEAEGVV----QEIRKNKQLVVDEAVFGAVINGYCQMGRMEDAARLLN 373

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
           +M   +     F    MI+  C+ GR   A  +++ M   G+ P   SYNS+V G CK G
Sbjct: 374 EMVDSRLQVNLFVYNIMINGYCKLGRMVEAHNILHEMTGVGVRPDTYSYNSLVDGYCKKG 433

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC- 247
              +A++     ++ G+  +  TY  L++G C    ++ A + L F++ KK +    I  
Sbjct: 434 LMNKAFETYNTMLRNGFAATTLTYNALLKGFCSLGSIDDALR-LWFLMLKKGIAPNEISC 492

Query: 248 -----------------------------------NIYLRALCLIKNPTELLNVLVFMLQ 272
                                              N  +  LC I+   E   ++  M Q
Sbjct: 493 STLLDGFFKSGKTEKALNLWKETLARGLAKNTTTFNTVINGLCKIERMPEAEELVDKMKQ 552

Query: 273 TQCQPDVITLNTVINGFCKMGRIEEALKVLNDM---------------VAGKFCA----- 312
            +C PD+IT  T+ +G+CK+G ++ A ++LN++               + G F A     
Sbjct: 553 WRCPPDIITYRTLFSGYCKIGDMDRASRILNELENLGFAPTIEFFNSLITGHFIAKQHGK 612

Query: 313 --------------PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
                         P+ V +  +I G    G +  A NL Y  M ++G  P +   ++++
Sbjct: 613 VNDILFEMSNRGLSPNTVAYGALIAGWCKEGDLHTAYNL-YLEMIEKGLVPNLFICSSLV 671

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTT--------------------------YAIV 392
              +R  + +EA  V   ++G  ++ D +                           + IV
Sbjct: 672 SCFYRKGKFDEANLVLQNLVGTDMIPDISAPRLEIGKVANFIDTVAGGNHHSAKIMWNIV 731

Query: 393 IDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGV 452
           I GLC+  ++++AK    D+     + DN+ Y+++I G   SG +  A      ++  G+
Sbjct: 732 IFGLCKLGRIEDAKNLLADLKDKGFVADNFTYSSLIHGCSASGFVDVAFDLRDTMLSVGL 791

Query: 453 TPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
           TPNIV YN +I G CK      A  + +++   G++P+A+T+  L   H   G
Sbjct: 792 TPNIVTYNSLIYGLCKSGELSRAVSLFKKLWTKGISPNAITYNTLIDKHCKDG 844



 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 130/523 (24%), Positives = 243/523 (46%), Gaps = 41/523 (7%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C L R+ EAH +  +M   G  P+  SY +L+ GYC+ G M+ A++ ++ M   G    +
Sbjct: 395 CKLGRMVEAHNILHEMTGVGVRPDTYSYNSLVDGYCKKGLMNKAFETYNTMLRNGFAATT 454

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           LTY+ L++G      ++ A     +LW  M ++  ++ N  + + L+D   + G   +  
Sbjct: 455 LTYNALLKGFCSLGSIDDA----LRLWFLMLKK-GIAPNEISCSTLLDGFFKSGKTEKAL 509

Query: 125 RI-AEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            +  E + +G + N       +I+ LC+  R   A  +V  M++    P +++Y ++  G
Sbjct: 510 NLWKETLARGLAKNTT-TFNTVINGLCKIERMPEAEELVDKMKQWRCPPDIITYRTLFSG 568

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK G   RA ++L E    G+ P+   +  L+ G        K   +L  M ++     
Sbjct: 569 YCKIGDMDRASRILNELENLGFAPTIEFFNSLITGHFIAKQHGKVNDILFEMSNRGLSPN 628

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
           T      +   C   +     N+ + M++    P++   +++++ F + G+ +EA  VL 
Sbjct: 629 TVAYGALIAGWCKEGDLHTAYNLYLEMIEKGLVPNLFICSSLVSCFYRKGKFDEANLVLQ 688

Query: 304 -------------------------DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLL 338
                                    D VAG       + +  +IFGL  +GRI++A NLL
Sbjct: 689 NLVGTDMIPDISAPRLEIGKVANFIDTVAGGNHHSAKIMWNIVIFGLCKLGRIEDAKNLL 748

Query: 339 YQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE 398
              +  +G+     TY++++ G      V+ A ++ + ML +G+  +  TY  +I GLC+
Sbjct: 749 AD-LKDKGFVADNFTYSSLIHGCSASGFVDVAFDLRDTMLSVGLTPNIVTYNSLIYGLCK 807

Query: 399 SNQLDEA----KRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTP 454
           S +L  A    K+ W   + P+ I     Y  +I   C+ G I EA      +++ G+ P
Sbjct: 808 SGELSRAVSLFKKLWTKGISPNAI----TYNTLIDKHCKDGYITEAFKLKQRMIEEGIHP 863

Query: 455 NIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            +  Y+++I+G C      EA ++L +M +N ++P+ VT+  L
Sbjct: 864 TVFTYSILINGLCTQGYMEEAIKLLDQMIENNVDPNYVTYWTL 906



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 127/569 (22%), Positives = 246/569 (43%), Gaps = 69/569 (12%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +++L     +G    +F  M+  G +P+  +   +   YC+   +  A +  +EM   GV
Sbjct: 215 LNRLAQTGDLGATVAVFEQMQRAGALPDKFTVAIMAKAYCKVKGVVHALEFVEEMTKMGV 274

Query: 61  -----------------------------------LPNSLTYSVLVRGVLRTRDVERANV 85
                                               PN +TY++LV+G    +++E A  
Sbjct: 275 EVNLVAYHAVMNGYCEVGQTNDARRMLDSLPGRGFSPNIVTYTLLVKGYCNEKNMEEAEG 334

Query: 86  LMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHM 145
           ++    + +++ + L V+ A F  +++  C+ G + +  R+  +M   +     F    M
Sbjct: 335 VV----QEIRKNKQLVVDEAVFGAVINGYCQMGRMEDAARLLNEMVDSRLQVNLFVYNIM 390

Query: 146 IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY 205
           I+  C+ GR   A  +++ M   G+ P   SYNS+V G CK G   +A++     ++ G+
Sbjct: 391 INGYCKLGRMVEAHNILHEMTGVGVRPDTYSYNSLVDGYCKKGLMNKAFETYNTMLRNGF 450

Query: 206 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 265
             +  TY  L++G C    ++ A ++   ML K        C+  L          + LN
Sbjct: 451 AATTLTYNALLKGFCSLGSIDDALRLWFLMLKKGIAPNEISCSTLLDGFFKSGKTEKALN 510

Query: 266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 325
           +    L      +  T NTVING CK+ R+ EA ++++ M   + C PD +T+ T+  G 
Sbjct: 511 LWKETLARGLAKNTTTFNTVINGLCKIERMPEAEELVDKMKQWR-CPPDIITYRTLFSGY 569

Query: 326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 385
             +G +  A  +L + +   G++P I  +N+++ G F  ++  +  ++   M   G+  +
Sbjct: 570 CKIGDMDRASRILNE-LENLGFAPTIEFFNSLITGHFIAKQHGKVNDILFEMSNRGLSPN 628

Query: 386 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY 445
           +  Y  +I G C+   L  A   + +++    + + ++ ++++    R GK  EA   L 
Sbjct: 629 TVAYGALIAGWCKEGDLHTAYNLYLEMIEKGLVPNLFICSSLVSCFYRKGKFDEANLVLQ 688

Query: 446 ELVDSGVTPNI--------------------------VCYNVVIDGACKLSMKREAYQIL 479
            LV + + P+I                          + +N+VI G CKL    +A  +L
Sbjct: 689 NLVGTDMIPDISAPRLEIGKVANFIDTVAGGNHHSAKIMWNIVIFGLCKLGRIEDAKNLL 748

Query: 480 REMRKNGLNPDAVTWRILDKLHGNRGNDF 508
            +++  G   D  T+  L  +HG   + F
Sbjct: 749 ADLKDKGFVADNFTYSSL--IHGCSASGF 775



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 120/472 (25%), Positives = 223/472 (47%), Gaps = 10/472 (2%)

Query: 28  NVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLM 87
           +  S+  L+      G++D A +VFDEMR  G   +  + + ++  + +T D+  A V +
Sbjct: 172 SAASFDLLLRALANAGQLDGALQVFDEMRTLGCRLSMRSCNSILNRLAQTGDLG-ATVAV 230

Query: 88  FKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQ-GKSVNEEFACGHMI 146
           F+  +R     D        A +  + C+   V       E+M + G  VN   A   ++
Sbjct: 231 FEQMQRAGALPD----KFTVAIMAKAYCKVKGVVHALEFVEEMTKMGVEVN-LVAYHAVM 285

Query: 147 DSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL 206
           +  C  G+ + A R++  +  RG +P++V+Y  +V G C       A  +++E  +   L
Sbjct: 286 NGYCEVGQTNDARRMLDSLPGRGFSPNIVTYTLLVKGYCNEKNMEEAEGVVQEIRKNKQL 345

Query: 207 -PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 265
              E  +  ++ G C    +E A ++L  M+  +      + NI +   C +    E  N
Sbjct: 346 VVDEAVFGAVINGYCQMGRMEDAARLLNEMVDSRLQVNLFVYNIMINGYCKLGRMVEAHN 405

Query: 266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 325
           +L  M     +PD  + N++++G+CK G + +A +  N M+   F A   +T+  ++ G 
Sbjct: 406 ILHEMTGVGVRPDTYSYNSLVDGYCKKGLMNKAFETYNTMLRNGFAA-TTLTYNALLKGF 464

Query: 326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 385
            ++G I +AL L + +M ++G +P  ++ + +L G F+  + E+A  ++   L  G+  +
Sbjct: 465 CSLGSIDDALRLWF-LMLKKGIAPNEISCSTLLDGFFKSGKTEKALNLWKETLARGLAKN 523

Query: 386 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY 445
           +TT+  VI+GLC+  ++ EA+   D +       D   Y  +  G C+ G +  A   L 
Sbjct: 524 TTTFNTVINGLCKIERMPEAEELVDKMKQWRCPPDIITYRTLFSGYCKIGDMDRASRILN 583

Query: 446 ELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           EL + G  P I  +N +I G        +   IL EM   GL+P+ V +  L
Sbjct: 584 ELENLGFAPTIEFFNSLITGHFIAKQHGKVNDILFEMSNRGLSPNTVAYGAL 635



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 121/529 (22%), Positives = 237/529 (44%), Gaps = 43/529 (8%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           L    ++  A ++F +M++ G   ++ S  ++++   +TG++     VF++M+  G LP+
Sbjct: 183 LANAGQLDGALQVFDEMRTLGCRLSMRSCNSILNRLAQTGDLGATVAVFEQMQRAGALPD 242

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             T +++ +   + + V  A     +  E M  +  + VN  A+  +++  C  G  N+ 
Sbjct: 243 KFTVAIMAKAYCKVKGVVHA----LEFVEEMT-KMGVEVNLVAYHAVMNGYCEVGQTNDA 297

Query: 124 FRIAEDMP-QGKSVN-----------------------------------EEFACGHMID 147
            R+ + +P +G S N                                   +E   G +I+
Sbjct: 298 RRMLDSLPGRGFSPNIVTYTLLVKGYCNEKNMEEAEGVVQEIRKNKQLVVDEAVFGAVIN 357

Query: 148 SLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLP 207
             C+ GR   A+R++  M    L  +L  YN +++G CK G  + A+ +L E    G  P
Sbjct: 358 GYCQMGRMEDAARLLNEMVDSRLQVNLFVYNIMINGYCKLGRMVEAHNILHEMTGVGVRP 417

Query: 208 SEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVL 267
             ++Y  LV+G C +  + KA +    ML       T   N  L+  C + +  + L + 
Sbjct: 418 DTYSYNSLVDGYCKKGLMNKAFETYNTMLRNGFAATTLTYNALLKGFCSLGSIDDALRLW 477

Query: 268 VFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLN 327
             ML+    P+ I+ +T+++GF K G+ E+AL +  + +A +  A +  TF T+I GL  
Sbjct: 478 FLMLKKGIAPNEISCSTLLDGFFKSGKTEKALNLWKETLA-RGLAKNTTTFNTVINGLCK 536

Query: 328 VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADST 387
           + R+ EA  L+ + M Q    P I+TY  +  G  ++  ++ A  + N +  +G      
Sbjct: 537 IERMPEAEELVDK-MKQWRCPPDIITYRTLFSGYCKIGDMDRASRILNELENLGFAPTIE 595

Query: 388 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYEL 447
            +  +I G   + Q  +      ++       +   Y A+I G C+ G +H A +   E+
Sbjct: 596 FFNSLITGHFIAKQHGKVNDILFEMSNRGLSPNTVAYGALIAGWCKEGDLHTAYNLYLEM 655

Query: 448 VDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRI 496
           ++ G+ PN+   + ++    +     EA  +L+ +    + PD    R+
Sbjct: 656 IEKGLVPNLFICSSLVSCFYRKGKFDEANLVLQNLVGTDMIPDISAPRL 704



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 111/465 (23%), Positives = 199/465 (42%), Gaps = 82/465 (17%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C L  + +A +L+F M  +G  PN +S +TL+ G+ ++G+ + A  ++ E    G+  N
Sbjct: 464 FCSLGSIDDALRLWFLMLKKGIAPNEISCSTLLDGFFKSGKTEKALNLWKETLARGLAKN 523

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           + T++ ++ G+ +   +  A  L+ K+ ++ +   D+      +  L    C+ G ++  
Sbjct: 524 TTTFNTVINGLCKIERMPEAEELVDKM-KQWRCPPDI----ITYRTLFSGYCKIGDMDRA 578

Query: 124 FRIAEDMPQ-GKSVNEEF----ACGHMIDSLCRSGRNHG-ASRVVYVMRKRGLTPSLVSY 177
            RI  ++   G +   EF      GH I       + HG  + +++ M  RGL+P+ V+Y
Sbjct: 579 SRILNELENLGFAPTIEFFNSLITGHFI------AKQHGKVNDILFEMSNRGLSPNTVAY 632

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
            +++ G CK G    AY L  E I+ G +P+      LV     +   ++A  VLQ ++ 
Sbjct: 633 GALIAGWCKEGDLHTAYNLYLEMIEKGLVPNLFICSSLVSCFYRKGKFDEANLVLQNLVG 692

Query: 238 K---KDVDRTRI-----------------------CNIYLRALCLIKNPTELLNVLV--- 268
                D+   R+                        NI +  LC +    +  N+L    
Sbjct: 693 TDMIPDISAPRLEIGKVANFIDTVAGGNHHSAKIMWNIVIFGLCKLGRIEDAKNLLADLK 752

Query: 269 --------------------------------FMLQTQCQPDVITLNTVINGFCKMGRIE 296
                                            ML     P+++T N++I G CK G + 
Sbjct: 753 DKGFVADNFTYSSLIHGCSASGFVDVAFDLRDTMLSVGLTPNIVTYNSLIYGLCKSGELS 812

Query: 297 EALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
            A+ +   +   K  +P+A+T+ T+I      G I EA  L  Q M + G  P + TY+ 
Sbjct: 813 RAVSLFKKLWT-KGISPNAITYNTLIDKHCKDGYITEAFKL-KQRMIEEGIHPTVFTYSI 870

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL--CES 399
           ++ GL     +EEA ++ + M+   V  +  TY  +I G   CES
Sbjct: 871 LINGLCTQGYMEEAIKLLDQMIENNVDPNYVTYWTLIQGYVRCES 915



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/162 (22%), Positives = 80/162 (49%)

Query: 345 RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 404
           + +S    +++ +LR L    +++ A +VF+ M  +G      +   +++ L ++  L  
Sbjct: 167 KEFSFSAASFDLLLRALANAGQLDGALQVFDEMRTLGCRLSMRSCNSILNRLAQTGDLGA 226

Query: 405 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
               ++ +     + D +  A M K  C+   +  A+ F+ E+   GV  N+V Y+ V++
Sbjct: 227 TVAVFEQMQRAGALPDKFTVAIMAKAYCKVKGVVHALEFVEEMTKMGVEVNLVAYHAVMN 286

Query: 465 GACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           G C++    +A ++L  +   G +P+ VT+ +L K + N  N
Sbjct: 287 GYCEVGQTNDARRMLDSLPGRGFSPNIVTYTLLVKGYCNEKN 328



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 44/81 (54%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D+ C    + EA KL   M   G  P V +Y+ LI+G C  G M+ A K+ D+M    V
Sbjct: 837 IDKHCKDGYITEAFKLKQRMIEEGIHPTVFTYSILINGLCTQGYMEEAIKLLDQMIENNV 896

Query: 61  LPNSLTYSVLVRGVLRTRDVE 81
            PN +TY  L++G +R   V+
Sbjct: 897 DPNYVTYWTLIQGYVRCESVD 917


>gi|297835244|ref|XP_002885504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331344|gb|EFH61763.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 618

 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 131/487 (26%), Positives = 238/487 (48%), Gaps = 15/487 (3%)

Query: 19  DMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTR 78
           +M   G   N+ +   +I+ +CR  ++  A+ V       G  PN++T+S L+ G     
Sbjct: 94  EMDLNGIEHNMYTMNIMINCFCRKRKLLFAFSVVGRALKFGFEPNTITFSTLINGFCLEG 153

Query: 79  DVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNE 138
            V  A  L+ ++ E       ++VN      L++ LC +G V E   + + M +      
Sbjct: 154 RVSEAVALVDRMVEMKYRPNVVTVNT-----LINGLCLKGRVTEALVLIDRMVKYGCEAN 208

Query: 139 EFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLE 198
           E   G +++ +C+SG    A  +   M +R +  S+V Y+ ++  LCK G    A  L  
Sbjct: 209 EITYGPVLNRMCKSGNTALALDLFRKMEERSIKASVVQYSIVIDSLCKDGNLDDALSLFN 268

Query: 199 EGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR----TRICNIYLRAL 254
           E    G       Y  ++ GLC +   +   K+L+ M+ +  +      + + +++++  
Sbjct: 269 EMEMKGIKADVVAYSSIIGGLCNDGRWDDGAKMLREMIGRNIIPNVVTFSALIDVFVKEG 328

Query: 255 CLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPD 314
            L++   EL N    M+     PD IT +++I+GFCK  R+ EA ++L D++  K C P+
Sbjct: 329 KLLE-AKELYNE---MVARGIAPDTITYSSLIDGFCKENRLGEANQML-DLMVSKGCEPN 383

Query: 315 AVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVF 374
            VT++ +I       R+   + L  ++   +G     VTYN +++G  +  ++  AKE+F
Sbjct: 384 IVTYSILINSYCKAKRVDNGMRLFCEI-SSKGLVADTVTYNTLVQGFCQSGKLNVAKELF 442

Query: 375 NCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRS 434
             M+  GV     TY I++DGLC++ +L +A   ++ +     I    +Y  +I G+C +
Sbjct: 443 QEMVSRGVPPSVVTYGILLDGLCDNGELQKALEIFEKMQKSRMILGIGIYNIIIHGMCNA 502

Query: 435 GKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
            K+ +A      L   GV P+++ YNV+I G CK     EA  + R+M+++G  P   T+
Sbjct: 503 SKVDDAWSLFCSLSVKGVKPDVLTYNVMIGGLCKKGSLSEADMLFRKMKEDGCAPSDCTY 562

Query: 495 RILDKLH 501
            IL + H
Sbjct: 563 NILIRAH 569



 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 129/503 (25%), Positives = 236/503 (46%), Gaps = 54/503 (10%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C   RV EA  L   M    + PNVV+  TLI+G C  G +  A  + D M   G 
Sbjct: 146 INGFCLEGRVSEAVALVDRMVEMKYRPNVVTVNTLINGLCLKGRVTEALVLIDRMVKYGC 205

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             N +TY  ++  + ++ +      L   L+ +M EE  +  +   ++ ++DSLC++G +
Sbjct: 206 EANEITYGPVLNRMCKSGN----TALALDLFRKM-EERSIKASVVQYSIVIDSLCKDGNL 260

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           ++   +  +M       +  A   +I  LC  GR    ++++  M  R + P++V+++++
Sbjct: 261 DDALSLFNEMEMKGIKADVVAYSSIIGGLCNDGRWDDGAKMLREMIGRNIIPNVVTFSAL 320

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +    K G  + A +L  E +  G  P   TY  L++G C E+ L +A ++L  M+SK  
Sbjct: 321 IDVFVKEGKLLEAKELYNEMVARGIAPDTITYSSLIDGFCKENRLGEANQMLDLMVSK-- 378

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                             C+P+++T + +IN +CK  R++  ++
Sbjct: 379 ---------------------------------GCEPNIVTYSILINSYCKAKRVDNGMR 405

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +  + ++ K    D VT+ T++ G    G++  A   L+Q M  RG  P +VTY  +L G
Sbjct: 406 LFCE-ISSKGLVADTVTYNTLVQGFCQSGKLNVAKE-LFQEMVSRGVPPSVVTYGILLDG 463

Query: 361 LFRLRRVEEAKEVFNCM------LGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVW 414
           L     +++A E+F  M      LGIG+      Y I+I G+C ++++D+A   +  +  
Sbjct: 464 LCDNGELQKALEIFEKMQKSRMILGIGI------YNIIIHGMCNASKVDDAWSLFCSLSV 517

Query: 415 PSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKRE 474
                D   Y  MI GLC+ G + EA     ++ + G  P+   YN++I      S    
Sbjct: 518 KGVKPDVLTYNVMIGGLCKKGSLSEADMLFRKMKEDGCAPSDCTYNILIRAHLGGSGVIS 577

Query: 475 AYQILREMRKNGLNPDAVTWRIL 497
           + +++ EM+  G   DA T +++
Sbjct: 578 SVELIEEMKMRGFAADASTIKMV 600



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 116/477 (24%), Positives = 221/477 (46%), Gaps = 42/477 (8%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           +V EA  LF  M     +P+++ ++ L     R  E D+      EM   G+  N  T +
Sbjct: 49  KVNEAIDLFESMIQSRPLPSLIDFSKLFSAVARRKEYDLVLGFCKEMDLNGIEHNMYTMN 108

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
           +++    R R +    +  F +  R   +     N   F+ L++  C EG V+E   + +
Sbjct: 109 IMINCFCRKRKL----LFAFSVVGR-ALKFGFEPNTITFSTLINGFCLEGRVSEAVALVD 163

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
            M + K          +I+ LC  GR   A  ++  M K G   + ++Y  +++ +CK G
Sbjct: 164 RMVEMKYRPNVVTVNTLINGLCLKGRVTEALVLIDRMVKYGCEANEITYGPVLNRMCKSG 223

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
               A  L  +  +     S   Y ++++ LC + +L+ A  +                 
Sbjct: 224 NTALALDLFRKMEERSIKASVVQYSIVIDSLCKDGNLDDALSLF---------------- 267

Query: 249 IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 308
                     N  E+  +         + DV+  +++I G C  GR ++  K+L +M+ G
Sbjct: 268 ----------NEMEMKGI---------KADVVAYSSIIGGLCNDGRWDDGAKMLREMI-G 307

Query: 309 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE 368
           +   P+ VTF+ +I   +  G++ EA  L Y  M  RG +P  +TY++++ G  +  R+ 
Sbjct: 308 RNIIPNVVTFSALIDVFVKEGKLLEAKEL-YNEMVARGIAPDTITYSSLIDGFCKENRLG 366

Query: 369 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI 428
           EA ++ + M+  G   +  TY+I+I+  C++ ++D   R + +I     + D   Y  ++
Sbjct: 367 EANQMLDLMVSKGCEPNIVTYSILINSYCKAKRVDNGMRLFCEISSKGLVADTVTYNTLV 426

Query: 429 KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN 485
           +G C+SGK++ A     E+V  GV P++V Y +++DG C     ++A +I  +M+K+
Sbjct: 427 QGFCQSGKLNVAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELQKALEIFEKMQKS 483



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 94/362 (25%), Positives = 173/362 (47%), Gaps = 15/362 (4%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    + +A  LF +M+ +G   +VV+Y+++I G C  G  D   K+  EM    +
Sbjct: 251 IDSLCKDGNLDDALSLFNEMEMKGIKADVVAYSSIIGGLCNDGRWDDGAKMLREMIGRNI 310

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +PN +T+S L+   ++   +  A  L  ++  R      ++ +   +++L+D  C+E  +
Sbjct: 311 IPNVVTFSALIDVFVKEGKLLEAKELYNEMVAR-----GIAPDTITYSSLIDGFCKENRL 365

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E  ++ + M              +I+S C++ R     R+   +  +GL    V+YN++
Sbjct: 366 GEANQMLDLMVSKGCEPNIVTYSILINSYCKAKRVDNGMRLFCEISSKGLVADTVTYNTL 425

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           V G C+ G    A +L +E +  G  PS  TY +L++GLC   +L+KA ++ + M   + 
Sbjct: 426 VQGFCQSGKLNVAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELQKALEIFEKMQKSRM 485

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           +    I NI +  +C      +  ++   +     +PDV+T N +I G CK G + EA  
Sbjct: 486 ILGIGIYNIIIHGMCNASKVDDAWSLFCSLSVKGVKPDVLTYNVMIGGLCKKGSLSEA-- 543

Query: 301 VLNDMVAGKF----CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
              DM+  K     CAP   T+  +I   L    +  ++ L+ + M  RG++    T   
Sbjct: 544 ---DMLFRKMKEDGCAPSDCTYNILIRAHLGGSGVISSVELIEE-MKMRGFAADASTIKM 599

Query: 357 VL 358
           V+
Sbjct: 600 VV 601



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 92/378 (24%), Positives = 175/378 (46%), Gaps = 2/378 (0%)

Query: 120 VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           VNE   + E M Q + +        +  ++ R             M   G+  ++ + N 
Sbjct: 50  VNEAIDLFESMIQSRPLPSLIDFSKLFSAVARRKEYDLVLGFCKEMDLNGIEHNMYTMNI 109

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           +++  C+    + A+ ++   ++FG+ P+  T+  L+ G C E  + +A  ++  M+  K
Sbjct: 110 MINCFCRKRKLLFAFSVVGRALKFGFEPNTITFSTLINGFCLEGRVSEAVALVDRMVEMK 169

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                   N  +  LCL    TE L ++  M++  C+ + IT   V+N  CK G    AL
Sbjct: 170 YRPNVVTVNTLINGLCLKGRVTEALVLIDRMVKYGCEANEITYGPVLNRMCKSGNTALAL 229

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
            +   M      A   V ++ +I  L   G + +AL+L +  M  +G    +V Y++++ 
Sbjct: 230 DLFRKMEERSIKAS-VVQYSIVIDSLCKDGNLDDALSL-FNEMEMKGIKADVVAYSSIIG 287

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
           GL    R ++  ++   M+G  ++ +  T++ +ID   +  +L EAK  ++++V      
Sbjct: 288 GLCNDGRWDDGAKMLREMIGRNIIPNVVTFSALIDVFVKEGKLLEAKELYNEMVARGIAP 347

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           D   Y+++I G C+  ++ EA   L  +V  G  PNIV Y+++I+  CK        ++ 
Sbjct: 348 DTITYSSLIDGFCKENRLGEANQMLDLMVSKGCEPNIVTYSILINSYCKAKRVDNGMRLF 407

Query: 480 REMRKNGLNPDAVTWRIL 497
            E+   GL  D VT+  L
Sbjct: 408 CEISSKGLVADTVTYNTL 425


>gi|356551783|ref|XP_003544253.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 576

 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 127/476 (26%), Positives = 233/476 (48%), Gaps = 10/476 (2%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           E  +    M ++G  P+V++ T LI  +C+ G    A ++   +   G + +  +Y+VL+
Sbjct: 97  EGSRFLEYMTNKGKSPDVIACTALIREFCKIGRTKNASQIMGILEESGAVIDVTSYNVLI 156

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP 131
            G  ++ ++E A     ++ +RM     +S N A +  ++ SLC  G + +  ++     
Sbjct: 157 SGYCKSGEIEEA----LRVLDRM----GVSPNAATYDAVLCSLCDRGKLKQAMQVLGRQL 208

Query: 132 QGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCM 191
           Q K   +   C  +ID+ C+      A ++   MR +G  P +V+YN ++ G CK G   
Sbjct: 209 QSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKGGRLD 268

Query: 192 RAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYL 251
            A + L++   +G  P   ++ +++  LC       A K+L  ML K  +      NI +
Sbjct: 269 EAIRFLKKLPSYGCQPDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCLPSVVTFNILI 328

Query: 252 RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC 311
             LC      + LNVL  M +    P+  + N +I GFC    I+ A++ L  MV+ + C
Sbjct: 329 NFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNGKGIDRAIEYLEIMVS-RGC 387

Query: 312 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK 371
            PD VT+  ++  L   G++ +A+ +L Q +  +G SP +++YN V+ GL ++ + E A 
Sbjct: 388 YPDIVTYNILLTALCKDGKVDDAVVILSQ-LSSKGCSPSLISYNTVIDGLLKVGKAELAV 446

Query: 372 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 431
           E+   M   G+  D  T   V+ GL    ++ EA +F+  +   +   + ++Y ++I GL
Sbjct: 447 ELLEEMCYKGLKPDLITCTSVVGGLSREGKVREAMKFFHYLKRFAIRPNAFIYNSIITGL 506

Query: 432 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
           C+S +   A+ FL ++V  G  P    Y  +I G     +  +A ++  E+   GL
Sbjct: 507 CKSQQTSLAIDFLADMVAKGCKPTEATYTTLIKGITYEGLAEDASKLSNELYSRGL 562



 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 128/450 (28%), Positives = 221/450 (49%), Gaps = 10/450 (2%)

Query: 3   QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           + C + R   A ++   ++  G V +V SY  LI GYC++GE++ A +V D M   GV P
Sbjct: 123 EFCKIGRTKNASQIMGILEESGAVIDVTSYNVLISGYCKSGEIEEALRVLDRM---GVSP 179

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           N+ TY  ++  +     +++A   M  L  +++ +    V       L+D+ C+E  V +
Sbjct: 180 NAATYDAVLCSLCDRGKLKQA---MQVLGRQLQSKCYPDVVTCTV--LIDATCKESGVGQ 234

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
             ++  +M       +      +I   C+ GR   A R +  +   G  P ++S+N I+ 
Sbjct: 235 AMKLFNEMRNKGCKPDVVTYNVLIKGFCKGGRLDEAIRFLKKLPSYGCQPDVISHNMILR 294

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
            LC  G  M A +LL   ++ G LPS  T+ +L+  LC +  L KA  VL+ M       
Sbjct: 295 SLCSGGRWMDAMKLLATMLRKGCLPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTP 354

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
            +R  N  ++  C  K     +  L  M+   C PD++T N ++   CK G++++A+ +L
Sbjct: 355 NSRSFNPLIQGFCNGKGIDRAIEYLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVIL 414

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
           + + + K C+P  +++ T+I GLL VG+ + A+ LL + M  +G  P ++T  +V+ GL 
Sbjct: 415 SQL-SSKGCSPSLISYNTVIDGLLKVGKAELAVELLEE-MCYKGLKPDLITCTSVVGGLS 472

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
           R  +V EA + F+ +    +  ++  Y  +I GLC+S Q   A  F  D+V         
Sbjct: 473 REGKVREAMKFFHYLKRFAIRPNAFIYNSIITGLCKSQQTSLAIDFLADMVAKGCKPTEA 532

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGV 452
            Y  +IKG+   G   +A     EL   G+
Sbjct: 533 TYTTLIKGITYEGLAEDASKLSNELYSRGL 562



 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 113/380 (29%), Positives = 187/380 (49%), Gaps = 5/380 (1%)

Query: 114 LCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPS 173
           L R G + E  R  E M       +  AC  +I   C+ GR   AS+++ ++ + G    
Sbjct: 89  LIRNGELEEGSRFLEYMTNKGKSPDVIACTALIREFCKIGRTKNASQIMGILEESGAVID 148

Query: 174 LVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQ 233
           + SYN ++ G CK G    A ++L+   + G  P+  TY  ++  LC    L++A +VL 
Sbjct: 149 VTSYNVLISGYCKSGEIEEALRVLD---RMGVSPNAATYDAVLCSLCDRGKLKQAMQVLG 205

Query: 234 FMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMG 293
             L  K       C + + A C      + + +   M    C+PDV+T N +I GFCK G
Sbjct: 206 RQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKGG 265

Query: 294 RIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVT 353
           R++EA++ L  + +   C PD ++   I+  L + GR  +A+ LL   M ++G  P +VT
Sbjct: 266 RLDEAIRFLKKLPS-YGCQPDVISHNMILRSLCSGGRWMDAMKLL-ATMLRKGCLPSVVT 323

Query: 354 YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413
           +N ++  L +   + +A  V   M   G   +S ++  +I G C    +D A  + + +V
Sbjct: 324 FNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNGKGIDRAIEYLEIMV 383

Query: 414 WPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKR 473
                 D   Y  ++  LC+ GK+ +AV  L +L   G +P+++ YN VIDG  K+    
Sbjct: 384 SRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKAE 443

Query: 474 EAYQILREMRKNGLNPDAVT 493
            A ++L EM   GL PD +T
Sbjct: 444 LAVELLEEMCYKGLKPDLIT 463



 Score =  167 bits (424), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 125/459 (27%), Positives = 212/459 (46%), Gaps = 10/459 (2%)

Query: 41  RTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDL 100
           R GE++   +  + M + G  P+ +  + L+R   +    + A+ +M  L     EE   
Sbjct: 91  RNGELEEGSRFLEYMTNKGKSPDVIACTALIREFCKIGRTKNASQIMGIL-----EESGA 145

Query: 101 SVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASR 160
            ++  ++  L+   C+ G + E  R+ + M  G S N       ++ SLC  G+   A +
Sbjct: 146 VIDVTSYNVLISGYCKSGEIEEALRVLDRM--GVSPNAA-TYDAVLCSLCDRGKLKQAMQ 202

Query: 161 VVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLC 220
           V+    +    P +V+   ++   CK  G  +A +L  E    G  P   TY VL++G C
Sbjct: 203 VLGRQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFC 262

Query: 221 GESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVI 280
               L++A + L+ + S          N+ LR+LC      + + +L  ML+  C P V+
Sbjct: 263 KGGRLDEAIRFLKKLPSYGCQPDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCLPSVV 322

Query: 281 TLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQ 340
           T N +IN  C+ G + +AL VL +M+      P++ +F  +I G  N   I  A+  L +
Sbjct: 323 TFNILINFLCQKGLLGKALNVL-EMMPKHGHTPNSRSFNPLIQGFCNGKGIDRAIEYL-E 380

Query: 341 VMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN 400
           +M  RG  P IVTYN +L  L +  +V++A  + + +   G      +Y  VIDGL +  
Sbjct: 381 IMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVG 440

Query: 401 QLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYN 460
           + + A    +++ +     D     +++ GL R GK+ EA+ F + L    + PN   YN
Sbjct: 441 KAELAVELLEEMCYKGLKPDLITCTSVVGGLSREGKVREAMKFFHYLKRFAIRPNAFIYN 500

Query: 461 VVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
            +I G CK      A   L +M   G  P   T+  L K
Sbjct: 501 SIITGLCKSQQTSLAIDFLADMVAKGCKPTEATYTTLIK 539



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 96/357 (26%), Positives = 166/357 (46%), Gaps = 11/357 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C  S VG+A KLF +M+++G  P+VV+Y  LI G+C+ G +D A +   ++   G 
Sbjct: 223 IDATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKGGRLDEAIRFLKKLPSYGC 282

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +++++++R +        A     KL   M  +  L  +   F  L++ LC++G +
Sbjct: 283 QPDVISHNMILRSLCSGGRWMDA----MKLLATMLRKGCLP-SVVTFNILINFLCQKGLL 337

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +   + E MP+        +   +I   C       A   + +M  RG  P +V+YN +
Sbjct: 338 GKALNVLEMMPKHGHTPNSRSFNPLIQGFCNGKGIDRAIEYLEIMVSRGCYPDIVTYNIL 397

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +  LCK G    A  +L +    G  PS  +Y  +++GL      E A ++L+ M  K  
Sbjct: 398 LTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKAELAVELLEEMCYKGL 457

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                 C   +  L       E +    ++ +   +P+    N++I G CK  +   A+ 
Sbjct: 458 KPDLITCTSVVGGLSREGKVREAMKFFHYLKRFAIRPNAFIYNSIITGLCKSQQTSLAID 517

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
            L DMVA K C P   T+TT+I G+   G  ++A  L  ++     YS G+V  + V
Sbjct: 518 FLADMVA-KGCKPTEATYTTLIKGITYEGLAEDASKLSNEL-----YSRGLVKRSLV 568



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/173 (23%), Positives = 72/173 (41%), Gaps = 39/173 (22%)

Query: 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 384
           L+  G ++E    L + M  +G SP ++   A++R   ++ R + A ++   +   G V 
Sbjct: 89  LIRNGELEEGSRFL-EYMTNKGKSPDVIACTALIREFCKIGRTKNASQIMGILEESGAVI 147

Query: 385 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFL 444
           D T+Y +                                   +I G C+SG+I EA+  L
Sbjct: 148 DVTSYNV-----------------------------------LISGYCKSGEIEEALRVL 172

Query: 445 YELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
             +   GV+PN   Y+ V+   C     ++A Q+L    ++   PD VT  +L
Sbjct: 173 DRM---GVSPNAATYDAVLCSLCDRGKLKQAMQVLGRQLQSKCYPDVVTCTVL 222



 Score = 38.9 bits (89), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 17/70 (24%), Positives = 38/70 (54%)

Query: 428 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
           ++ L R+G++ E   FL  + + G +P+++    +I   CK+   + A QI+  + ++G 
Sbjct: 86  LRRLIRNGELEEGSRFLEYMTNKGKSPDVIACTALIREFCKIGRTKNASQIMGILEESGA 145

Query: 488 NPDAVTWRIL 497
             D  ++ +L
Sbjct: 146 VIDVTSYNVL 155


>gi|357475985|ref|XP_003608278.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124359684|gb|ABD32353.2| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355509333|gb|AES90475.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 870

 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 142/506 (28%), Positives = 235/506 (46%), Gaps = 37/506 (7%)

Query: 16  LFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVL 75
           L+ DM   G  P   ++  LI   C +  +D A ++FD+M   G  PN  T  +LVRG  
Sbjct: 138 LYTDMIQTGVNPETYTFNLLIQSLCESNALDHARELFDKMSEKGCQPNKFTVGILVRGFC 197

Query: 76  RTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKS 135
           R    ++A        E +  +   +VN   +  LV S C++   +E  ++ E M +   
Sbjct: 198 RAGRTKQA-------LEFVDGKMGGNVNRVVYNTLVSSFCKQDMNDEAEKLVERMTEKGL 250

Query: 136 VNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRG----LTPSLVSYNSIVHGLCKHGGCM 191
           + +       I +LCR+G+   ASR+   M+  G      P++V++N ++ G C+ G   
Sbjct: 251 LPDVVTFNSRISALCRAGKVFEASRIFRDMQMDGELGLPKPNVVTFNLMLKGFCQEGMME 310

Query: 192 RAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYL 251
            A  L+E   + G   S  +Y   + GL     L + R VL  M+           NI +
Sbjct: 311 EARSLVETMKKGGNFVSLESYNTWLLGLLRNGKLLEGRSVLDEMVENGIEPNIYSYNIVM 370

Query: 252 RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC 311
             LC      +   ++  M+     PD +T  T+++G+C  G++ EA  +LN+M+  K C
Sbjct: 371 DGLCRNHMMLDARRLMDLMVSNGVYPDTVTYTTLLHGYCSKGKVFEAKAILNEMIR-KGC 429

Query: 312 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK 371
            P+  T  T++  L   GR  EA  +L Q M ++ Y    VT N V+ GL R   +E+A 
Sbjct: 430 HPNTYTCNTLLNSLWKEGRKSEAEEML-QKMNEKSYQLDTVTCNIVVNGLCRNGELEKAS 488

Query: 372 EVFNCMLGIGV----------------------VADSTTYAIVIDGLCESNQLDEAKRFW 409
           EV + M   G                       V D  TY  +I+GLC+  +L+EAK+ +
Sbjct: 489 EVVSEMWTDGTNSLGKENPVAGLVNSIHNVSTNVPDVITYTTLINGLCKVGKLEEAKKKF 548

Query: 410 DDIVWPSNIH-DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACK 468
            +++   N+H D+  Y   +   C+ GKI  A+  L ++  +G +  +  YN +I G   
Sbjct: 549 IEMM-AKNLHPDSVTYDTFVLNFCKQGKISSALRVLKDMERNGCSKTLQTYNSLILGLGS 607

Query: 469 LSMKREAYQILREMRKNGLNPDAVTW 494
                E Y ++ EMR+ G++PD  T+
Sbjct: 608 KGQIFEMYGLMDEMRERGIHPDICTY 633



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 154/611 (25%), Positives = 267/611 (43%), Gaps = 115/611 (18%)

Query: 3   QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVL- 61
             C      EA KL   M  +G +P+VV++ + I   CR G++  A ++F +M+  G L 
Sbjct: 228 SFCKQDMNDEAEKLVERMTEKGLLPDVVTFNSRISALCRAGKVFEASRIFRDMQMDGELG 287

Query: 62  ---PNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREG 118
              PN +T++++++G  +   +E A  L+    E MK+  +  V+  ++   +  L R G
Sbjct: 288 LPKPNVVTFNLMLKGFCQEGMMEEARSLV----ETMKKGGNF-VSLESYNTWLLGLLRNG 342

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
            + E   + ++M +       ++   ++D LCR+     A R++ +M   G+ P  V+Y 
Sbjct: 343 KLLEGRSVLDEMVENGIEPNIYSYNIVMDGLCRNHMMLDARRLMDLMVSNGVYPDTVTYT 402

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
           +++HG C  G    A  +L E I+ G  P+ +T   L+  L  E    +A ++LQ M  K
Sbjct: 403 TLLHGYCSKGKVFEAKAILNEMIRKGCHPNTYTCNTLLNSLWKEGRKSEAEEMLQKMNEK 462

Query: 239 KDVDRTRICNIYLRALCL-----------------------IKNPTELLNVLVFMLQTQC 275
                T  CNI +  LC                         +NP   L   +  + T  
Sbjct: 463 SYQLDTVTCNIVVNGLCRNGELEKASEVVSEMWTDGTNSLGKENPVAGLVNSIHNVSTNV 522

Query: 276 QPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEAL 335
            PDVIT  T+ING CK+G++EEA K   +M+A K   PD+VT+ T +      G+I  AL
Sbjct: 523 -PDVITYTTLINGLCKVGKLEEAKKKFIEMMA-KNLHPDSVTYDTFVLNFCKQGKISSAL 580

Query: 336 NLLYQV----------------------------------MPQRGYSPGIVTYNAVLRGL 361
            +L  +                                  M +RG  P I TYN ++  L
Sbjct: 581 RVLKDMERNGCSKTLQTYNSLILGLGSKGQIFEMYGLMDEMRERGIHPDICTYNNMINCL 640

Query: 362 FRLRRVEEAKEVFNCMLGIGVVADS-TTYAIVIDGLCES--------------------- 399
               + ++A  + + ML  GVV+ + +++ I+I   C+S                     
Sbjct: 641 CEGGKTKDATSLLHEMLDKGVVSPNVSSFKILIKAFCKSGDFKVACELFDVALSVCGHKE 700

Query: 400 -------------NQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE 446
                         +L +AK  ++  +  S +  N++Y  +I  LC+ G++ +A   L +
Sbjct: 701 ALYSLMFNELLAGGKLSDAKELFEASLERSLLSKNFMYEDLIDKLCKDGRLDDAHGLLQK 760

Query: 447 LVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR---------KNGLNPDAVTWRIL 497
           L+D G   +   +  VIDG  K   K++A ++ R M          +   N +++  R  
Sbjct: 761 LIDKGYCFDHSSFIPVIDGLSKRGNKQQADELGRIMELALEDKTSDRTYRNGNSIFRR-- 818

Query: 498 DKLHGNRGNDF 508
            KLH + G+D+
Sbjct: 819 -KLHKDGGSDW 828



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 95/354 (26%), Positives = 174/354 (49%), Gaps = 8/354 (2%)

Query: 148 SLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLP 207
           S  +  R H  + +   M + G+ P   ++N ++  LC+      A +L ++  + G  P
Sbjct: 125 SSLQQNRPHYVTSLYTDMIQTGVNPETYTFNLLIQSLCESNALDHARELFDKMSEKGCQP 184

Query: 208 SEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC-NIYLRALCLIKNPTELLNV 266
           ++ T  +LV G C      + ++ L+F+  K   +  R+  N  + + C      E   +
Sbjct: 185 NKFTVGILVRGFCRAG---RTKQALEFVDGKMGGNVNRVVYNTLVSSFCKQDMNDEAEKL 241

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM-VAGKF--CAPDAVTFTTIIF 323
           +  M +    PDV+T N+ I+  C+ G++ EA ++  DM + G+     P+ VTF  ++ 
Sbjct: 242 VERMTEKGLLPDVVTFNSRISALCRAGKVFEASRIFRDMQMDGELGLPKPNVVTFNLMLK 301

Query: 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 383
           G    G ++EA +L+ + M + G    + +YN  L GL R  ++ E + V + M+  G+ 
Sbjct: 302 GFCQEGMMEEARSLV-ETMKKGGNFVSLESYNTWLLGLLRNGKLLEGRSVLDEMVENGIE 360

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
            +  +Y IV+DGLC ++ + +A+R  D +V      D   Y  ++ G C  GK+ EA   
Sbjct: 361 PNIYSYNIVMDGLCRNHMMLDARRLMDLMVSNGVYPDTVTYTTLLHGYCSKGKVFEAKAI 420

Query: 444 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           L E++  G  PN    N +++   K   K EA ++L++M +     D VT  I+
Sbjct: 421 LNEMIRKGCHPNTYTCNTLLNSLWKEGRKSEAEEMLQKMNEKSYQLDTVTCNIV 474



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 105/442 (23%), Positives = 198/442 (44%), Gaps = 24/442 (5%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           MD LC    + +A +L   M S G  P+ V+YTTL+HGYC  G++  A  + +EM   G 
Sbjct: 370 MDGLCRNHMMLDARRLMDLMVSNGVYPDTVTYTTLLHGYCSKGKVFEAKAILNEMIRKGC 429

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN+ T + L+  + +      A  ++ K+ E+  + + ++ N      +V+ LCR G +
Sbjct: 430 HPNTYTCNTLLNSLWKEGRKSEAEEMLQKMNEKSYQLDTVTCN-----IVVNGLCRNGEL 484

Query: 121 NEVFRIAEDM--PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
            +   +  +M      S+ +E     +++S+      H  S  V         P +++Y 
Sbjct: 485 EKASEVVSEMWTDGTNSLGKENPVAGLVNSI------HNVSTNV---------PDVITYT 529

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
           ++++GLCK G    A +   E +     P   TY   V   C +  +  A +VL+ M   
Sbjct: 530 TLINGLCKVGKLEEAKKKFIEMMAKNLHPDSVTYDTFVLNFCKQGKISSALRVLKDMERN 589

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
                 +  N  +  L       E+  ++  M +    PD+ T N +IN  C+ G+ ++A
Sbjct: 590 GCSKTLQTYNSLILGLGSKGQIFEMYGLMDEMRERGIHPDICTYNNMINCLCEGGKTKDA 649

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
             +L++M+     +P+  +F  +I      G  + A  L    +   G+   +  Y+ + 
Sbjct: 650 TSLLHEMLDKGVVSPNVSSFKILIKAFCKSGDFKVACELFDVALSVCGHKEAL--YSLMF 707

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
             L    ++ +AKE+F   L   +++ +  Y  +ID LC+  +LD+A      ++     
Sbjct: 708 NELLAGGKLSDAKELFEASLERSLLSKNFMYEDLIDKLCKDGRLDDAHGLLQKLIDKGYC 767

Query: 419 HDNYVYAAMIKGLCRSGKIHEA 440
            D+  +  +I GL + G   +A
Sbjct: 768 FDHSSFIPVIDGLSKRGNKQQA 789



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 84/312 (26%), Positives = 147/312 (47%), Gaps = 45/312 (14%)

Query: 195 QLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRAL 254
            L  + IQ G  P  +T+ +L++ LC  + L+ AR++   M  K                
Sbjct: 137 SLYTDMIQTGVNPETYTFNLLIQSLCESNALDHARELFDKMSEKG--------------- 181

Query: 255 CLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPD 314
                               CQP+  T+  ++ GFC+ GR ++AL+ ++  + G     +
Sbjct: 182 --------------------CQPNKFTVGILVRGFCRAGRTKQALEFVDGKMGGNV---N 218

Query: 315 AVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVF 374
            V + T++          EA  L+ + M ++G  P +VT+N+ +  L R  +V EA  +F
Sbjct: 219 RVVYNTLVSSFCKQDMNDEAEKLV-ERMTEKGLLPDVVTFNSRISALCRAGKVFEASRIF 277

Query: 375 NCMLGIGVVA----DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKG 430
             M   G +     +  T+ +++ G C+   ++EA+   + +    N      Y   + G
Sbjct: 278 RDMQMDGELGLPKPNVVTFNLMLKGFCQEGMMEEARSLVETMKKGGNFVSLESYNTWLLG 337

Query: 431 LCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD 490
           L R+GK+ E    L E+V++G+ PNI  YN+V+DG C+  M  +A +++  M  NG+ PD
Sbjct: 338 LLRNGKLLEGRSVLDEMVENGIEPNIYSYNIVMDGLCRNHMMLDARRLMDLMVSNGVYPD 397

Query: 491 AVTWRILDKLHG 502
            VT+  L  LHG
Sbjct: 398 TVTYTTL--LHG 407


>gi|115471383|ref|NP_001059290.1| Os07g0249100 [Oryza sativa Japonica Group]
 gi|33146978|dbj|BAC80051.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50508482|dbj|BAD30659.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610826|dbj|BAF21204.1| Os07g0249100 [Oryza sativa Japonica Group]
 gi|215767773|dbj|BAH00002.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 882

 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 127/505 (25%), Positives = 247/505 (48%), Gaps = 12/505 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R+GEA +LF  M++   VP   +Y T+I GY   G  + AYK+ + +R  G +P+
Sbjct: 294 LCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPS 353

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            ++++ ++  + + R V+ A      L+E MK+  D   N++ +  ++D LC  G V E 
Sbjct: 354 VVSFNSILTCLGKKRKVDEA----LSLFEVMKK--DAEPNSSTYNIIIDMLCLGGRVEEA 407

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           +RI ++M              M+D LC++ +   A ++     +RG  P  V+Y S++ G
Sbjct: 408 YRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDG 467

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           L K G    AY+L E+ +  G+  +   Y  L+         E   K+ + ++ +     
Sbjct: 468 LGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRGCKPD 527

Query: 244 TRICNIYLRALCLIKNPTELLNVLVF--MLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
             + N Y+   C+ K        ++F  +      PDV + + +I+G  K G+  E   +
Sbjct: 528 LTLLNTYMD--CVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNI 585

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
            + M    F A DA  +  ++ G    G++ +A  +L + M ++   P + TY A++ GL
Sbjct: 586 FHAMKQQGF-ALDARAYNAVVDGFCKSGKVHKAYEILEE-MKEKCVQPTVATYGAIVDGL 643

Query: 362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
            ++ R++EA  +F      G+  +   Y+ +IDG  +  ++DEA    ++++      + 
Sbjct: 644 AKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNV 703

Query: 422 YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
           Y + +++  L ++ +I+EA+     + +    PN   Y+++I+G C++    +A+   ++
Sbjct: 704 YTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQD 763

Query: 482 MRKNGLNPDAVTWRILDKLHGNRGN 506
           M+K GL P+ VT+  +       GN
Sbjct: 764 MQKQGLVPNVVTYTTMISGLAKVGN 788



 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 124/478 (25%), Positives = 222/478 (46%), Gaps = 8/478 (1%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           +V EA  LF  MK     PN  +Y  +I   C  G ++ AY++ DEM H  + PN LT +
Sbjct: 369 KVDEALSLFEVMKKDAE-PNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVN 427

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
           ++V  + + R +E A    +K++E    +   + +   + +L+D L ++G V+E +R+ E
Sbjct: 428 IMVDRLCKARKLEEA----YKIFES-ASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFE 482

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
            M              +I +    GR     ++   + +RG  P L   N+ +  + K G
Sbjct: 483 KMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFKAG 542

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
              +   + E+   +G+LP   +Y +L+ GL       +   +   M  +      R  N
Sbjct: 543 EVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYN 602

Query: 249 IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 308
             +   C      +   +L  M +   QP V T   +++G  K+ R++EA  +  +    
Sbjct: 603 AVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEE-AKS 661

Query: 309 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE 368
           K    + V ++++I G   VGRI EA  +L ++M ++G +P + T+N++L  L +   + 
Sbjct: 662 KGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMM-KKGLTPNVYTWNSLLDALVKAEEIN 720

Query: 369 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI 428
           EA   F  M  +    ++ TY+I+I+GLC   + ++A  FW D+     + +   Y  MI
Sbjct: 721 EALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMI 780

Query: 429 KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG 486
            GL + G I +A         +G  P+   +N +I+G    +   EAYQ+  E R  G
Sbjct: 781 SGLAKVGNITDAYSLFERFKANGGIPDAASFNALIEGMSNANRAMEAYQVFEETRLRG 838



 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 128/498 (25%), Positives = 237/498 (47%), Gaps = 10/498 (2%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           R   A +L   M+  G+   V  +TTL+    R G++  A  + DE++   + P+ + Y+
Sbjct: 194 RPERALELLRQMQEVGYEVGVHLFTTLVRALAREGQVADALALVDEVKGSCLEPDIVLYN 253

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
           V +    +  +V+ A    +K +  +K +  L  ++ ++ +++  LC+ G + E   +  
Sbjct: 254 VCIDCFGKAGNVDMA----WKFFHELKAQ-GLKPDDVSYTSMIWVLCKAGRLGEAEELFA 308

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
            M   +SV   +A   MI     +GR   A +++  +R+RG  PS+VS+NSI+  L K  
Sbjct: 309 QMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKR 368

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
               A  L E  ++    P+  TY ++++ LC    +E+A ++L  M            N
Sbjct: 369 KVDEALSLFEV-MKKDAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVN 427

Query: 249 IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV-A 307
           I +  LC  +   E   +     Q  C PD +T  ++I+G  K G+++EA ++   M+ A
Sbjct: 428 IMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDA 487

Query: 308 GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRV 367
           G    P  V +T++I      GR ++   +  +++ +RG  P +   N  +  +F+   V
Sbjct: 488 GHNANP--VVYTSLIRNFFIHGRKEDGHKIFKELI-RRGCKPDLTLLNTYMDCVFKAGEV 544

Query: 368 EEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAM 427
           E+ + +F  +   G + D  +Y+I+I GL ++ Q  E    +  +       D   Y A+
Sbjct: 545 EKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAV 604

Query: 428 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
           + G C+SGK+H+A   L E+ +  V P +  Y  ++DG  K+    EAY +  E +  G+
Sbjct: 605 VDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGI 664

Query: 488 NPDAVTWRILDKLHGNRG 505
             + V +  L    G  G
Sbjct: 665 ELNVVLYSSLIDGFGKVG 682



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 108/414 (26%), Positives = 206/414 (49%), Gaps = 13/414 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D+LC   ++ EA+K+F     RG  P+ V+Y +LI G  + G++D AY++F++M   G 
Sbjct: 430 VDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGH 489

Query: 61  LPNSLTYSVLVRGVL---RTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCRE 117
             N + Y+ L+R      R  D  +    +FK   R   + DL++ N      +D + + 
Sbjct: 490 NANPVVYTSLIRNFFIHGRKEDGHK----IFKELIRRGCKPDLTLLN----TYMDCVFKA 541

Query: 118 GYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
           G V +   I ED+     + +  +   +I  L ++G+    S + + M+++G      +Y
Sbjct: 542 GEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAY 601

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
           N++V G CK G   +AY++LEE  +    P+  TY  +V+GL     L++A  + +   S
Sbjct: 602 NAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKS 661

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
           K       + +  +     +    E   +L  M++    P+V T N++++   K   I E
Sbjct: 662 KGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINE 721

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           AL     M   K C P+  T++ +I GL  V +  +A  + +Q M ++G  P +VTY  +
Sbjct: 722 ALVCFQSMKEMK-CPPNTYTYSILINGLCRVQKYNKAF-VFWQDMQKQGLVPNVVTYTTM 779

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDD 411
           + GL ++  + +A  +F      G + D+ ++  +I+G+  +N+  EA + +++
Sbjct: 780 ISGLAKVGNITDAYSLFERFKANGGIPDAASFNALIEGMSNANRAMEAYQVFEE 833



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 99/367 (26%), Positives = 169/367 (46%), Gaps = 6/367 (1%)

Query: 141 ACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEG 200
           AC H+  +L R+ R   A   V VMR+    P+  +Y  ++  L +     RA +LL + 
Sbjct: 146 ACAHLAAALVRARRLDDAVLAVAVMRRLKFRPAFSAYTVLIGALAEARRPERALELLRQM 205

Query: 201 IQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNP 260
            + GY    H +  LV  L  E  +  A  ++  +          + N+ +       N 
Sbjct: 206 QEVGYEVGVHLFTTLVRALAREGQVADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNV 265

Query: 261 TELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTT 320
                    +     +PD ++  ++I   CK GR+ EA ++   M A +   P A  + T
Sbjct: 266 DMAWKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAER-SVPCAYAYNT 324

Query: 321 IIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI 380
           +I G  + GR ++A  LL + + +RG  P +V++N++L  L + R+V+EA  +F  M   
Sbjct: 325 MIMGYGSAGRFEDAYKLL-ERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKK- 382

Query: 381 GVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEA 440
               +S+TY I+ID LC   +++EA R  D++   S   +      M+  LC++ K+ EA
Sbjct: 383 DAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEA 442

Query: 441 VHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK- 499
                     G  P+ V Y  +IDG  K     EAY++  +M   G N + V +  L + 
Sbjct: 443 YKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRN 502

Query: 500 --LHGNR 504
             +HG +
Sbjct: 503 FFIHGRK 509



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 57/249 (22%), Positives = 97/249 (38%), Gaps = 38/249 (15%)

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           KVL +M    +  P+      +   L+   R+ +A+ L   VM +  + P    Y  ++ 
Sbjct: 130 KVLEEMAVLGYGLPNQAC-AHLAAALVRARRLDDAV-LAVAVMRRLKFRPAFSAYTVLIG 187

Query: 360 GLFRLRRVEEAKEVFNCMLGIGV-------------------VADSTT------------ 388
            L   RR E A E+   M  +G                    VAD+              
Sbjct: 188 ALAEARRPERALELLRQMQEVGYEVGVHLFTTLVRALAREGQVADALALVDEVKGSCLEP 247

Query: 389 ----YAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFL 444
               Y + ID   ++  +D A +F+ ++       D+  Y +MI  LC++G++ EA    
Sbjct: 248 DIVLYNVCIDCFGKAGNVDMAWKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELF 307

Query: 445 YELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW-RILDKLHGN 503
            ++      P    YN +I G        +AY++L  +R+ G  P  V++  IL  L   
Sbjct: 308 AQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKK 367

Query: 504 RGNDFGLRI 512
           R  D  L +
Sbjct: 368 RKVDEALSL 376



 Score = 41.6 bits (96), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 3/97 (3%)

Query: 4   LCGLSRVG---EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           + GL++VG   +A+ LF   K+ G +P+  S+  LI G         AY+VF+E R  G 
Sbjct: 780 ISGLAKVGNITDAYSLFERFKANGGIPDAASFNALIEGMSNANRAMEAYQVFEETRLRGC 839

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEE 97
             N  +   L+  + ++  +E+A ++   L E  K +
Sbjct: 840 RINIKSCISLLDALNKSECLEQAAIVGAVLREIAKSQ 876


>gi|225428276|ref|XP_002279589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g17140
           [Vitis vinifera]
 gi|297744485|emb|CBI37747.3| unnamed protein product [Vitis vinifera]
          Length = 878

 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 143/511 (27%), Positives = 236/511 (46%), Gaps = 73/511 (14%)

Query: 16  LFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVL 75
           L+ DM   G  P   +   LI G C +G  + A +VFD+M   G  PN  ++ +LVRG  
Sbjct: 138 LYKDMVVAGVSPETYTLNLLIAGLCDSGRFEDAREVFDKMGVKGCRPNEFSFGILVRGY- 196

Query: 76  RTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKS 135
                                                  CR G       + + M     
Sbjct: 197 ---------------------------------------CRAGLSMRALELLDGMGSFGV 217

Query: 136 VNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQ 195
              +     +I S CR GRN  A R+V  MR+ GL P +V++NS +  LC  G  + A +
Sbjct: 218 QPNKVIYNTLISSFCREGRNEEAERLVERMREDGLFPDVVTFNSRISALCSAGKILEASR 277

Query: 196 LLEE---GIQFGYL-PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYL 251
           +  +     + G   P+  T+ +++EG C E  LE+A+ +++ M    ++      NI+L
Sbjct: 278 IFRDMQIDEELGLPRPNITTFNLMLEGFCKEGMLEEAKTLVESMKRNGNLMELESYNIWL 337

Query: 252 RALCLIKNPTELLNVLVF--MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK 309
             L L++N   L   L    M+    +P++ + NTV++G CK G I +A  ++  M++  
Sbjct: 338 --LGLVRNGKLLEAQLALKEMVDKGIEPNIYSFNTVMDGLCKNGLISDARMIMGLMISSG 395

Query: 310 FCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEE 369
              PD VT++T++ G  + G++ +A N+L+++M +RG SP   T N +L  L++  R+ E
Sbjct: 396 I-GPDTVTYSTLLHGCCSTGKVLKANNILHEMM-RRGCSPNTYTCNILLHSLWKEGRIFE 453

Query: 370 AKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA-------------------KRFWD 410
           A+++   M       D+ T  IVIDGLC+S +LDEA                     F  
Sbjct: 454 AEKLLQKMNERSYDLDNVTCNIVIDGLCKSGKLDEAVEIVEGMWIHGSAALGNLGNSFIG 513

Query: 411 DIVWPSN----IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466
            +   SN    + D   Y+ +I GLC++G++ EA     E+V   + P+ + Y+  I   
Sbjct: 514 LVDSSSNGKKCLPDLITYSIIINGLCKAGRLDEARKKFIEMVGKSLHPDSIIYDTFIHSF 573

Query: 467 CKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           CK      A+++L++M K G N    T+  L
Sbjct: 574 CKHGKISSAFRVLKDMEKRGCNKSLQTYNSL 604



 Score =  194 bits (493), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 148/537 (27%), Positives = 248/537 (46%), Gaps = 41/537 (7%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R  +A ++F  M  +G  PN  S+  L+ GYCR G    A ++ D M   GV PN
Sbjct: 161 LCDSGRFEDAREVFDKMGVKGCRPNEFSFGILVRGYCRAGLSMRALELLDGMGSFGVQPN 220

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            + Y+ L+    R    E A     +L ERM+E+  L  +   F + + +LC  G + E 
Sbjct: 221 KVIYNTLISSFCREGRNEEAE----RLVERMRED-GLFPDVVTFNSRISALCSAGKILEA 275

Query: 124 FRIAEDMPQGKSVNEEFACGH--------MIDSLCRSGRNHGASRVVYVMRKRGLTPSLV 175
            RI  DM     ++EE             M++  C+ G    A  +V  M++ G    L 
Sbjct: 276 SRIFRDM----QIDEELGLPRPNITTFNLMLEGFCKEGMLEEAKTLVESMKRNGNLMELE 331

Query: 176 SYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM 235
           SYN  + GL ++G  + A   L+E +  G  P+ +++  +++GLC    +  AR ++  M
Sbjct: 332 SYNIWLLGLVRNGKLLEAQLALKEMVDKGIEPNIYSFNTVMDGLCKNGLISDARMIMGLM 391

Query: 236 LSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 295
           +S      T   +  L   C      +  N+L  M++  C P+  T N +++   K GRI
Sbjct: 392 ISSGIGPDTVTYSTLLHGCCSTGKVLKANNILHEMMRRGCSPNTYTCNILLHSLWKEGRI 451

Query: 296 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLL-------YQVMPQRGYS 348
            EA K+L  M    +   D VT   +I GL   G++ EA+ ++          +   G S
Sbjct: 452 FEAEKLLQKMNERSY-DLDNVTCNIVIDGLCKSGKLDEAVEIVEGMWIHGSAALGNLGNS 510

Query: 349 ---------------PGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVI 393
                          P ++TY+ ++ GL +  R++EA++ F  M+G  +  DS  Y   I
Sbjct: 511 FIGLVDSSSNGKKCLPDLITYSIIINGLCKAGRLDEARKKFIEMVGKSLHPDSIIYDTFI 570

Query: 394 DGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVT 453
              C+  ++  A R   D+           Y ++I GL    +I E    L ++ + G+T
Sbjct: 571 HSFCKHGKISSAFRVLKDMEKRGCNKSLQTYNSLILGLGSKNQIFEIYGLLDDMKEKGIT 630

Query: 454 PNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGNDFGL 510
           PNI  YN +I   C+    ++A  +L EM + G++P+  ++R+L K    + +DFG+
Sbjct: 631 PNICTYNNMISCLCEGGRIKDATSLLDEMLQKGISPNISSFRLLIKAFC-KASDFGV 686



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 143/590 (24%), Positives = 251/590 (42%), Gaps = 105/590 (17%)

Query: 13  AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVR 72
           A +L   M S G  PN V Y TLI  +CR G  + A ++ + MR  G+ P+ +T++  + 
Sbjct: 205 ALELLDGMGSFGVQPNKVIYNTLISSFCREGRNEEAERLVERMREDGLFPDVVTFNSRIS 264

Query: 73  GVLRTRDVERANVLMFKLWERMKEEEDLSV---NNAAFANLVDSLCREGYVNEVFRIAED 129
            +     +  A+    +++  M+ +E+L +   N   F  +++  C+EG + E   + E 
Sbjct: 265 ALCSAGKILEAS----RIFRDMQIDEELGLPRPNITTFNLMLEGFCKEGMLEEAKTLVES 320

Query: 130 MPQ--------------------GKSVNEEFACGHMIDS---------------LCRSGR 154
           M +                    GK +  + A   M+D                LC++G 
Sbjct: 321 MKRNGNLMELESYNIWLLGLVRNGKLLEAQLALKEMVDKGIEPNIYSFNTVMDGLCKNGL 380

Query: 155 NHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKV 214
              A  ++ +M   G+ P  V+Y++++HG C  G  ++A  +L E ++ G  P+ +T  +
Sbjct: 381 ISDARMIMGLMISSGIGPDTVTYSTLLHGCCSTGKVLKANNILHEMMRRGCSPNTYTCNI 440

Query: 215 LVEGLCGESDLEKARKVLQFMLSKK-DVDRTRICNIYLRALCLIKNPTELLNVLVFML-- 271
           L+  L  E  + +A K+LQ M  +  D+D    CNI +  LC      E + ++  M   
Sbjct: 441 LLHSLWKEGRIFEAEKLLQKMNERSYDLDNV-TCNIVIDGLCKSGKLDEAVEIVEGMWIH 499

Query: 272 ---------------------QTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKF 310
                                  +C PD+IT + +ING CK GR++EA K   +MV GK 
Sbjct: 500 GSAALGNLGNSFIGLVDSSSNGKKCLPDLITYSIIINGLCKAGRLDEARKKFIEMV-GKS 558

Query: 311 CAPDAVTFTTIIFGLLNVGRIQEALNLLYQV----------------------------- 341
             PD++ + T I      G+I  A  +L  +                             
Sbjct: 559 LHPDSIIYDTFIHSFCKHGKISSAFRVLKDMEKRGCNKSLQTYNSLILGLGSKNQIFEIY 618

Query: 342 -----MPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 396
                M ++G +P I TYN ++  L    R+++A  + + ML  G+  + +++ ++I   
Sbjct: 619 GLLDDMKEKGITPNICTYNNMISCLCEGGRIKDATSLLDEMLQKGISPNISSFRLLIKAF 678

Query: 397 CESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNI 456
           C+++     K  + +I      H   +Y+ M   L   G++ EA       +D       
Sbjct: 679 CKASDFGVVKEVF-EIALSICGHKEALYSLMFNELLIGGEVSEAKELFDAALDRCFDLGN 737

Query: 457 VCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWR-ILDKLHGNRG 505
             YN +I+  CK  M   A  IL +M   G   D  ++  ++D L G RG
Sbjct: 738 FQYNDLIEKLCKDEMLENASDILHKMIDKGYRFDPASFMPVIDGL-GKRG 786



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 118/505 (23%), Positives = 218/505 (43%), Gaps = 31/505 (6%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C    + EA  L   MK  G++  + SY   + G  R G++  A     EM   G+
Sbjct: 302 LEGFCKEGMLEEAKTLVESMKRNGNLMELESYNIWLLGLVRNGKLLEAQLALKEMVDKGI 361

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN  +++ ++ G+ +   +  A ++M      +     +  +   ++ L+   C  G V
Sbjct: 362 EPNIYSFNTVMDGLCKNGLISDARMIM-----GLMISSGIGPDTVTYSTLLHGCCSTGKV 416

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +   I  +M +       + C  ++ SL + GR   A +++  M +R      V+ N +
Sbjct: 417 LKANNILHEMMRRGCSPNTYTCNILLHSLWKEGRIFEAEKLLQKMNERSYDLDNVTCNIV 476

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGY-----------------------LPSEHTYKVLVE 217
           + GLCK G    A +++E     G                        LP   TY +++ 
Sbjct: 477 IDGLCKSGKLDEAVEIVEGMWIHGSAALGNLGNSFIGLVDSSSNGKKCLPDLITYSIIIN 536

Query: 218 GLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQP 277
           GLC    L++ARK    M+ K     + I + ++ + C     +    VL  M +  C  
Sbjct: 537 GLCKAGRLDEARKKFIEMVGKSLHPDSIIYDTFIHSFCKHGKISSAFRVLKDMEKRGCNK 596

Query: 278 DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNL 337
            + T N++I G     +I E   +L+DM   K   P+  T+  +I  L   GRI++A +L
Sbjct: 597 SLQTYNSLILGLGSKNQIFEIYGLLDDMKE-KGITPNICTYNNMISCLCEGGRIKDATSL 655

Query: 338 LYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLC 397
           L +++ Q+G SP I ++  +++   +       KEVF   L I        Y+++ + L 
Sbjct: 656 LDEML-QKGISPNISSFRLLIKAFCKASDFGVVKEVFEIALSI-CGHKEALYSLMFNELL 713

Query: 398 ESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIV 457
              ++ EAK  +D  +       N+ Y  +I+ LC+   +  A   L++++D G   +  
Sbjct: 714 IGGEVSEAKELFDAALDRCFDLGNFQYNDLIEKLCKDEMLENASDILHKMIDKGYRFDPA 773

Query: 458 CYNVVIDGACKLSMKREAYQILREM 482
            +  VIDG  K   K +A ++   M
Sbjct: 774 SFMPVIDGLGKRGKKHDADELAERM 798



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 105/403 (26%), Positives = 181/403 (44%), Gaps = 17/403 (4%)

Query: 110 LVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRG 169
           +++S  RE  V+    + +DM       E +    +I  LC SGR   A  V   M  +G
Sbjct: 122 VLESSLREDKVDSFSWLYKDMVVAGVSPETYTLNLLIAGLCDSGRFEDAREVFDKMGVKG 181

Query: 170 LTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKAR 229
             P+  S+  +V G C+ G  MRA +LL+    FG  P++  Y  L+   C E   E+A 
Sbjct: 182 CRPNEFSFGILVRGYCRAGLSMRALELLDGMGSFGVQPNKVIYNTLISSFCREGRNEEAE 241

Query: 230 KVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQ----CQPDVITLNTV 285
           ++++ M            N  + ALC      E   +   M   +     +P++ T N +
Sbjct: 242 RLVERMREDGLFPDVVTFNSRISALCSAGKILEASRIFRDMQIDEELGLPRPNITTFNLM 301

Query: 286 INGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQR 345
           + GFCK G +EEA K L + +       +  ++   + GL+  G++ EA  L  + M  +
Sbjct: 302 LEGFCKEGMLEEA-KTLVESMKRNGNLMELESYNIWLLGLVRNGKLLEA-QLALKEMVDK 359

Query: 346 GYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA 405
           G  P I ++N V+ GL +   + +A+ +   M+  G+  D+ TY+ ++ G C + ++ +A
Sbjct: 360 GIEPNIYSFNTVMDGLCKNGLISDARMIMGLMISSGIGPDTVTYSTLLHGCCSTGKVLKA 419

Query: 406 KRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDG 465
                +++      + Y    ++  L + G+I EA   L ++ +     + V  N+VIDG
Sbjct: 420 NNILHEMMRRGCSPNTYTCNILLHSLWKEGRIFEAEKLLQKMNERSYDLDNVTCNIVIDG 479

Query: 466 ACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGNDF 508
            CK     EA +I+  M           W       GN GN F
Sbjct: 480 LCKSGKLDEAVEIVEGM-----------WIHGSAALGNLGNSF 511



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 93/337 (27%), Positives = 154/337 (45%), Gaps = 47/337 (13%)

Query: 172 PSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKV 231
           P +  YN ++    +         L ++ +  G  P  +T  +L+ GLC     E AR+V
Sbjct: 114 PPVYLYNMVLESSLREDKVDSFSWLYKDMVVAGVSPETYTLNLLIAGLCDSGRFEDAREV 173

Query: 232 LQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK 291
              M  K                                    C+P+  +   ++ G+C+
Sbjct: 174 FDKMGVKG-----------------------------------CRPNEFSFGILVRGYCR 198

Query: 292 MGRIEEALKVLNDMVAGKF-CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG 350
            G    AL++L+ M  G F   P+ V + T+I      GR +EA  L+ + M + G  P 
Sbjct: 199 AGLSMRALELLDGM--GSFGVQPNKVIYNTLISSFCREGRNEEAERLV-ERMREDGLFPD 255

Query: 351 IVTYNAVLRGLFRLRRVEEAKEVFNCM-----LGIGVVADSTTYAIVIDGLCESNQLDEA 405
           +VT+N+ +  L    ++ EA  +F  M     LG+    + TT+ ++++G C+   L+EA
Sbjct: 256 VVTFNSRISALCSAGKILEASRIFRDMQIDEELGL-PRPNITTFNLMLEGFCKEGMLEEA 314

Query: 406 KRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDG 465
           K   + +    N+ +   Y   + GL R+GK+ EA   L E+VD G+ PNI  +N V+DG
Sbjct: 315 KTLVESMKRNGNLMELESYNIWLLGLVRNGKLLEAQLALKEMVDKGIEPNIYSFNTVMDG 374

Query: 466 ACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
            CK  +  +A  I+  M  +G+ PD VT+  L  LHG
Sbjct: 375 LCKNGLISDARMIMGLMISSGIGPDTVTYSTL--LHG 409


>gi|357505881|ref|XP_003623229.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498244|gb|AES79447.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 770

 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 128/476 (26%), Positives = 236/476 (49%), Gaps = 7/476 (1%)

Query: 23  RGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVER 82
           RG   NV ++  L+ G+C++G+   A  +F  M+   ++P+ ++Y+ ++ G+ + + +  
Sbjct: 123 RGFHLNVYNFNLLLKGFCQSGDSHKAMDLFCMMKRNCLIPDCVSYNTVINGLCKGKRLVE 182

Query: 83  ANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFAC 142
           A     +L++ MK  E    N+  F+ L+D  C+ G V E F + E+M +     + F  
Sbjct: 183 AK----ELFKEMKGGE-CKPNSVTFSALIDGFCKNGDVEEGFGLLEEMEKMGLEGDVFVY 237

Query: 143 GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQ 202
             +I   C  G       +   M ++ +TP++V+Y+ +++ LCK      A Q+L+    
Sbjct: 238 SALISGFCSKGDIERGKELFNEMLRKNVTPNVVTYSCLMNALCKKQKWKEAAQMLDTMTG 297

Query: 203 FGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTE 262
               P    Y VL +GL        A KVL  M+ + +       N  +  LC      +
Sbjct: 298 CKVRPDVVAYTVLADGLSKNGRASDAIKVLDLMVKRGEEPNNVTYNAIINGLCKEGRVDD 357

Query: 263 LLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKF-CAPDAVTFTTI 321
            L +L  M +   +PDV+T +T++ G C +G+I+EA+ +LN +++ +F   PD   F  +
Sbjct: 358 ALGILETMAKKGKKPDVVTYSTLVKGLCGVGKIDEAVDLLNLLMSKEFHIKPDVFAFNLV 417

Query: 322 IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG 381
           I  L    R++ A   +Y  M +RG+   IVTYN ++ G     ++ +A E++   +  G
Sbjct: 418 IQELCKQRRLRHA-KRVYYTMVERGFPSNIVTYNILIDGYLSAGKLTKALELWKDAVDSG 476

Query: 382 VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAV 441
           +  ++ TY ++I+GLC+   L  AK  ++             Y  ++  LCR   + +A 
Sbjct: 477 ISPNAATYTVLINGLCKMQMLSIAKGLFNKKRASGTRPTVSEYNTLMASLCRESSVEQAR 536

Query: 442 HFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           +   E+ ++   P++V +N++IDG  K      A ++L EM    L PD +T+ IL
Sbjct: 537 NLFQEMRNANHDPDVVSFNIIIDGTLKAGDVESAKELLLEMLNMNLVPDNITFSIL 592



 Score =  195 bits (495), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 127/484 (26%), Positives = 245/484 (50%), Gaps = 9/484 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   R+ EA +LF +MK     PN V+++ LI G+C+ G+++  + + +EM   G+
Sbjct: 171 INGLCKGKRLVEAKELFKEMKGGECKPNSVTFSALIDGFCKNGDVEEGFGLLEEMEKMGL 230

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             +   YS L+ G     D+ER   L  ++  +     +++ N   ++ L+++LC++   
Sbjct: 231 EGDVFVYSALISGFCSKGDIERGKELFNEMLRK-----NVTPNVVTYSCLMNALCKKQKW 285

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E  ++ + M   K   +  A   + D L ++GR   A +V+ +M KRG  P+ V+YN+I
Sbjct: 286 KEAAQMLDTMTGCKVRPDVVAYTVLADGLSKNGRASDAIKVLDLMVKRGEEPNNVTYNAI 345

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++GLCK G    A  +LE   + G  P   TY  LV+GLCG   +++A  +L  ++SK+ 
Sbjct: 346 INGLCKEGRVDDALGILETMAKKGKKPDVVTYSTLVKGLCGVGKIDEAVDLLNLLMSKEF 405

Query: 241 VDRTRIC--NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
             +  +   N+ ++ LC  +       V   M++     +++T N +I+G+   G++ +A
Sbjct: 406 HIKPDVFAFNLVIQELCKQRRLRHAKRVYYTMVERGFPSNIVTYNILIDGYLSAGKLTKA 465

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
           L++  D V     +P+A T+T +I GL  +  +  A  L +      G  P +  YN ++
Sbjct: 466 LELWKDAVDSGI-SPNAATYTVLINGLCKMQMLSIAKGL-FNKKRASGTRPTVSEYNTLM 523

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
             L R   VE+A+ +F  M       D  ++ I+IDG  ++  ++ AK    +++  + +
Sbjct: 524 ASLCRESSVEQARNLFQEMRNANHDPDVVSFNIIIDGTLKAGDVESAKELLLEMLNMNLV 583

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI 478
            DN  ++ +I    + G++ EA      +V  G  P+ V ++ ++ G        +   +
Sbjct: 584 PDNITFSILINRFLKLGQLDEAASLYERMVSCGHVPDAVLFDSLLKGYSLKGKTEKVVSM 643

Query: 479 LREM 482
           L++M
Sbjct: 644 LQQM 647



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 129/477 (27%), Positives = 229/477 (48%), Gaps = 15/477 (3%)

Query: 26  VPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANV 85
           +P+  S  TLI    +    D    V  +M    V P   + S L+   + T   ++ + 
Sbjct: 56  IPSYSSCNTLIDNLRKAKHYDHVISVHSKMASVSVFPCFTSLSALIESFVNT---QKPSF 112

Query: 86  LMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHM 145
               L   MK    L+V N  F  L+   C+ G  ++   +   M +   + +  +   +
Sbjct: 113 AFGVLGLIMKRGFHLNVYN--FNLLLKGFCQSGDSHKAMDLFCMMKRNCLIPDCVSYNTV 170

Query: 146 IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY 205
           I+ LC+  R   A  +   M+     P+ V++++++ G CK+G     + LLEE  + G 
Sbjct: 171 INGLCKGKRLVEAKELFKEMKGGECKPNSVTFSALIDGFCKNGDVEEGFGLLEEMEKMGL 230

Query: 206 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 265
                 Y  L+ G C + D+E+ +++   ML K         +  + ALC  +   E   
Sbjct: 231 EGDVFVYSALISGFCSKGDIERGKELFNEMLRKNVTPNVVTYSCLMNALCKKQKWKEAAQ 290

Query: 266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 325
           +L  M   + +PDV+    + +G  K GR  +A+KVL D++  +   P+ VT+  II GL
Sbjct: 291 MLDTMTGCKVRPDVVAYTVLADGLSKNGRASDAIKVL-DLMVKRGEEPNNVTYNAIINGL 349

Query: 326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG--IGVV 383
              GR+ +AL +L + M ++G  P +VTY+ +++GL  + +++EA ++ N ++     + 
Sbjct: 350 CKEGRVDDALGIL-ETMAKKGKKPDVVTYSTLVKGLCGVGKIDEAVDLLNLLMSKEFHIK 408

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIV---WPSNIHDNYVYAAMIKGLCRSGKIHEA 440
            D   + +VI  LC+  +L  AKR +  +V   +PSNI     Y  +I G   +GK+ +A
Sbjct: 409 PDVFAFNLVIQELCKQRRLRHAKRVYYTMVERGFPSNI---VTYNILIDGYLSAGKLTKA 465

Query: 441 VHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           +    + VDSG++PN   Y V+I+G CK+ M   A  +  + R +G  P    +  L
Sbjct: 466 LELWKDAVDSGISPNAATYTVLINGLCKMQMLSIAKGLFNKKRASGTRPTVSEYNTL 522



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 101/372 (27%), Positives = 169/372 (45%), Gaps = 39/372 (10%)

Query: 128 EDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKH 187
           +D P   S+    +C  +ID+L ++        V   M    + P   S ++++      
Sbjct: 50  QDYPN--SIPSYSSCNTLIDNLRKAKHYDHVISVHSKMASVSVFPCFTSLSALIESFVNT 107

Query: 188 GGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC 247
                A+ +L   ++ G+  + + + +L++G C   D  KA  +  F + K++       
Sbjct: 108 QKPSFAFGVLGLIMKRGFHLNVYNFNLLLKGFCQSGDSHKAMDL--FCMMKRN------- 158

Query: 248 NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA 307
                  CLI                   PD ++ NTVING CK  R+ EA ++  +M  
Sbjct: 159 -------CLI-------------------PDCVSYNTVINGLCKGKRLVEAKELFKEMKG 192

Query: 308 GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRV 367
           G+ C P++VTF+ +I G    G ++E   LL + M + G    +  Y+A++ G      +
Sbjct: 193 GE-CKPNSVTFSALIDGFCKNGDVEEGFGLLEE-MEKMGLEGDVFVYSALISGFCSKGDI 250

Query: 368 EEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAM 427
           E  KE+FN ML   V  +  TY+ +++ LC+  +  EA +  D +       D   Y  +
Sbjct: 251 ERGKELFNEMLRKNVTPNVVTYSCLMNALCKKQKWKEAAQMLDTMTGCKVRPDVVAYTVL 310

Query: 428 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
             GL ++G+  +A+  L  +V  G  PN V YN +I+G CK     +A  IL  M K G 
Sbjct: 311 ADGLSKNGRASDAIKVLDLMVKRGEEPNNVTYNAIINGLCKEGRVDDALGILETMAKKGK 370

Query: 488 NPDAVTWRILDK 499
            PD VT+  L K
Sbjct: 371 KPDVVTYSTLVK 382



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 63/267 (23%), Positives = 123/267 (46%), Gaps = 5/267 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           + +LC   R+  A ++++ M  RG   N+V+Y  LI GY   G++  A +++ +    G+
Sbjct: 418 IQELCKQRRLRHAKRVYYTMVERGFPSNIVTYNILIDGYLSAGKLTKALELWKDAVDSGI 477

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN+ TY+VL+ G+ + + +  A  L  K     K         + +  L+ SLCRE  V
Sbjct: 478 SPNAATYTVLINGLCKMQMLSIAKGLFNK-----KRASGTRPTVSEYNTLMASLCRESSV 532

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +   + ++M       +  +   +ID   ++G    A  ++  M    L P  ++++ +
Sbjct: 533 EQARNLFQEMRNANHDPDVVSFNIIIDGTLKAGDVESAKELLLEMLNMNLVPDNITFSIL 592

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++   K G    A  L E  +  G++P    +  L++G   +   EK   +LQ M  K  
Sbjct: 593 INRFLKLGQLDEAASLYERMVSCGHVPDAVLFDSLLKGYSLKGKTEKVVSMLQQMADKDV 652

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVL 267
           V  +++ +  L  LC +    ++  +L
Sbjct: 653 VLDSKLTSTILACLCNMSKDVDIEKIL 679


>gi|34015232|gb|AAQ56425.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|34015270|gb|AAQ56462.1| putative fertility restorer [Oryza sativa Japonica Group]
          Length = 1007

 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 135/499 (27%), Positives = 238/499 (47%), Gaps = 7/499 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC    V +A  +   +      P+  +YT++I G+CR  ++D A +VF++M   G 
Sbjct: 222 INALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGC 281

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN++TYS L+ G+  +  V  A    F L   M     L   +     ++ +LC  G  
Sbjct: 282 EPNTVTYSTLINGLCDSGRVNEA----FDLIREMILHGILPTAHTCTGPII-ALCDMGCY 336

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            + +R+  DM         +    +I  LC SG    A  + + M + G+ P+ V+YN++
Sbjct: 337 EDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNAL 396

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++ L ++     A+ +L    + G  P+  TY  +++G C   D +KA  V+  ML +  
Sbjct: 397 INILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGH 456

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                  N  ++  C   N T  L +L  M    C+PD  +   +I GFCK+ ++E A  
Sbjct: 457 SANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFG 516

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           + N+MV    C P+ VT+T +I G     ++  A +LL + M + G  P + TYN ++ G
Sbjct: 517 LFNEMVDDGLC-PNEVTYTALIDGYCKDEKLDTATSLL-EHMKRSGCRPNVQTYNVLIHG 574

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L +      A+E+   M+  G+  +  TY  +IDGLC++     A   ++ ++    + +
Sbjct: 575 LTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPN 634

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              Y+++I+ L + GK+ EA +   EL   G+ P+ + Y  +I+          A+  L 
Sbjct: 635 LLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLG 694

Query: 481 EMRKNGLNPDAVTWRILDK 499
            M K G  P   T+ +L K
Sbjct: 695 RMIKAGCQPTLWTYGVLIK 713



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 129/505 (25%), Positives = 228/505 (45%), Gaps = 45/505 (8%)

Query: 4   LCGLSRVGEAHKL---FFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           L  LSR+G    +   +  M S G  PN++ Y  +I+  C+ G +  A  +  ++    +
Sbjct: 187 LIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEM 246

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P++ TY+ ++ G  R  D++ A     +++ +M +E     N   ++ L++ LC  G V
Sbjct: 247 SPDTFTYTSMILGHCRKHDLDSA----LQVFNQMAKE-GCEPNTVTYSTLINGLCDSGRV 301

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           NE F +  +M     +     C   I +LC  G    A R+   M+ +G  P++ +Y ++
Sbjct: 302 NEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTAL 361

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GLC  G    A  L     + G  P+  TY  L+  L                     
Sbjct: 362 ISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINIL--------------------- 400

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           V+  RI   ++              VL  M +  C P+++T N +I G+C +G  ++A+ 
Sbjct: 401 VENRRIKYAFV--------------VLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAML 446

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           V+N+M+     A + VT+ TII G  + G    AL +L  +M   G  P   +Y  ++ G
Sbjct: 447 VMNNMLQRGHSA-NLVTYNTIIKGYCDSGNTTSALRIL-DLMRDGGCKPDEWSYTELICG 504

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
             ++ ++E A  +FN M+  G+  +  TY  +IDG C+  +LD A    + +       +
Sbjct: 505 FCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPN 564

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              Y  +I GL +      A      +++ G+ PN+V Y  +IDG CK      A ++  
Sbjct: 565 VQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFN 624

Query: 481 EMRKNGLNPDAVTWRILDKLHGNRG 505
           +M + G  P+ +T+  L +  G  G
Sbjct: 625 KMIEQGCLPNLLTYSSLIRALGQEG 649



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 128/507 (25%), Positives = 221/507 (43%), Gaps = 31/507 (6%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC +    +A +LF DMK++G  PNV +YT LI G C +G + VA  +F  M   GV PN
Sbjct: 330 LCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPN 389

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           ++TY+ L+  ++  R ++ A V++      +      S N   +  ++   C  G   + 
Sbjct: 390 TVTYNALINILVENRRIKYAFVVL-----NLMGRNGCSPNIVTYNEMIKGYCILGDPKKA 444

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             +  +M Q            +I   C SG    A R++ +MR  G  P   SY  ++ G
Sbjct: 445 MLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICG 504

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK      A+ L  E +  G  P+E TY  L++G C +  L+ A  +L+ M        
Sbjct: 505 FCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPN 564

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
            +  N+ +  L    N +    +   M++    P+V+T   +I+G CK G    AL++ N
Sbjct: 565 VQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFN 624

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            M+  + C P+ +T++++I  L   G+++EA NL  + + + G  P  +TY  ++     
Sbjct: 625 KMIE-QGCLPNLLTYSSLIRALGQEGKVEEAENLFAE-LERHGLIPDEITYVKMIEAYIM 682

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQL-DEAKRFWDDIV------WPS 416
             +VE A      M+  G      TY ++I GL     L D+      D+V      + +
Sbjct: 683 SGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSFGYQT 742

Query: 417 NIHDN-----------------YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCY 459
              D                   V  A++  L  +G+  EA   L  ++  G+ P+   Y
Sbjct: 743 TDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANELLGSMISQGLCPDQEAY 802

Query: 460 NVVIDGACKLSMKREAYQILREMRKNG 486
           N ++    ++     A  + + M   G
Sbjct: 803 NSLLCSLLRVRNVDLAMGVFKHMSTQG 829



 Score =  158 bits (399), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 118/415 (28%), Positives = 190/415 (45%), Gaps = 42/415 (10%)

Query: 97  EEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNH 156
            E +  N   +  ++++LC++G V +   I + + + +   + F    MI   CR     
Sbjct: 208 SEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLD 267

Query: 157 GASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLV 216
            A +V   M K G  P+ V+Y+++++GLC  G    A+ L+ E I  G LP+ HT     
Sbjct: 268 SALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHT----- 322

Query: 217 EGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQ 276
                                         C   + ALC +    +   + V M    C+
Sbjct: 323 ------------------------------CTGPIIALCDMGCYEDAWRLFVDMKNKGCE 352

Query: 277 PDVITLNTVINGFCKMGRIEEALKVLNDMVA-GKFCAPDAVTFTTIIFGLLNVGRIQEAL 335
           P+V T   +I+G C  G ++ A+ + + M   G F  P+ VT+  +I  L+   RI+ A 
Sbjct: 353 PNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVF--PNTVTYNALINILVENRRIKYAF 410

Query: 336 NLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG 395
            +L  +M + G SP IVTYN +++G   L   ++A  V N ML  G  A+  TY  +I G
Sbjct: 411 VVL-NLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKG 469

Query: 396 LCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN 455
            C+S     A R  D +       D + Y  +I G C+  K+  A     E+VD G+ PN
Sbjct: 470 YCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPN 529

Query: 456 IVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG-NRGNDFG 509
            V Y  +IDG CK      A  +L  M+++G  P+  T+ +L  +HG  + N+F 
Sbjct: 530 EVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVL--IHGLTKQNNFS 582



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 124/490 (25%), Positives = 216/490 (44%), Gaps = 35/490 (7%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C L    +A  +  +M  RGH  N+V+Y T+I GYC +G    A ++ D MR  G  P+ 
Sbjct: 436 CILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDE 495

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
            +Y+ L+ G  +   +E A    F L+  M ++  L  N   +  L+D  C++  ++   
Sbjct: 496 WSYTELICGFCKISKMESA----FGLFNEMVDD-GLCPNEVTYTALIDGYCKDEKLDTAT 550

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
            + E M +            +I  L +     GA  +  VM + G+ P++V+Y +++ GL
Sbjct: 551 SLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGL 610

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM----LSKKD 240
           CK+G    A ++  + I+ G LP+  TY  L+  L  E  +E+A  +   +    L   +
Sbjct: 611 CKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDE 670

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI-EEAL 299
           +   ++   Y+ +           N L  M++  CQP + T   +I G      + ++ L
Sbjct: 671 ITYVKMIEAYIMS----GKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRL 726

Query: 300 KVLNDMVAG-----KFCAPDAVTFTTIIFGLLNVG---RIQEAL-------------NLL 338
             L D+V       +    DAV+  +     L+ G   ++Q AL             N L
Sbjct: 727 AALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANEL 786

Query: 339 YQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE 398
              M  +G  P    YN++L  L R+R V+ A  VF  M   G       Y  +I  LC+
Sbjct: 787 LGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALCQ 846

Query: 399 SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVC 458
            ++  EA+  +++++  +   D+ V A +I GL R G     + FL+ +      P+   
Sbjct: 847 LHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLRDGYKDLCMEFLHIMETRRYMPSFHI 906

Query: 459 YNVVIDGACK 468
           Y ++   A K
Sbjct: 907 YTILAREASK 916



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 73/153 (47%)

Query: 341 VMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN 400
           ++ Q G   G+  Y+A+L  L RL       + ++ ML  GV  +   Y  VI+ LC+  
Sbjct: 170 MLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDG 229

Query: 401 QLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYN 460
            + +A+     +       D + Y +MI G CR   +  A+    ++   G  PN V Y+
Sbjct: 230 NVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYS 289

Query: 461 VVIDGACKLSMKREAYQILREMRKNGLNPDAVT 493
            +I+G C      EA+ ++REM  +G+ P A T
Sbjct: 290 TLINGLCDSGRVNEAFDLIREMILHGILPTAHT 322


>gi|356519375|ref|XP_003528348.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 589

 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 133/478 (27%), Positives = 233/478 (48%), Gaps = 10/478 (2%)

Query: 22  SRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVE 81
           S G  P+V + T +I+  C        + V   M   GV P  +T++ L+ G+    +V 
Sbjct: 99  SLGIKPDVYTLTIIINCLCHLNHTVFGFSVLGVMFKIGVDPTVVTFATLINGLCAEGNVA 158

Query: 82  RANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE-- 139
           RA      L E M  +     N+  +  +++ LC+ G  +      E + +G++ + +  
Sbjct: 159 RAARFADSL-EDMGHQS----NSYTYGAIINGLCKAGDTSGAILYLEKI-KGRNCDLDVV 212

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
            A   ++DSLC+ G    A  +   M  +G+ P LV+YNS++HGLC  G    A  LL  
Sbjct: 213 IAYSTIMDSLCKDGMVCEALNLFSGMTSKGIQPDLVAYNSLIHGLCNFGRWKEATTLLGN 272

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
            ++ G +P+  T+ VLV+  C +  + +A+ ++ FM+           N  +   CL+  
Sbjct: 273 MMRKGIMPNVQTFNVLVDNFCKDGMISRAKTIMGFMVHVGVEPDVVTYNSVISGHCLLSQ 332

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
             + + V   M+     P+++T +++I+G+CK   I +AL +L +MV      PD VT++
Sbjct: 333 MGDAVKVFELMIHKGFLPNLVTYSSLIHGWCKTKNINKALFLLGEMVNSGL-NPDVVTWS 391

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
           T+I G    G+  EA   L+  M +    P + T   +L GLF+ +   EA  +F  M  
Sbjct: 392 TLIGGFCKAGK-PEAAKELFCTMHEHDQHPNLQTCAIILDGLFKCQFHSEAISLFREMEK 450

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
           + +  +   Y IV+DG+C   +L++A+  +  +       D   Y  MIKGLC+ G + +
Sbjct: 451 MNLELNVVIYNIVLDGMCSFGKLNDAQELFSCLPSKGIKIDVVAYTTMIKGLCKEGLLDD 510

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           A + L ++ ++G  PN   YNV + G  +      + + L  M+  GL+ DA T  +L
Sbjct: 511 AENLLMKMEENGCLPNEFTYNVFVRGLLQRYDISRSTKYLLLMKGKGLSADATTTELL 568



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 124/468 (26%), Positives = 216/468 (46%), Gaps = 20/468 (4%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC L+       +   M   G  P VV++ TLI+G C  G +  A +  D +   G   N
Sbjct: 116 LCHLNHTVFGFSVLGVMFKIGVDPTVVTFATLINGLCAEGNVARAARFADSLEDMGHQSN 175

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           S TY  ++ G+ +  D   A + + K+  R     DL V   A++ ++DSLC++G V E 
Sbjct: 176 SYTYGAIINGLCKAGDTSGAILYLEKIKGR---NCDLDVV-IAYSTIMDSLCKDGMVCEA 231

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             +   M       +  A   +I  LC  GR   A+ ++  M ++G+ P++ ++N +V  
Sbjct: 232 LNLFSGMTSKGIQPDLVAYNSLIHGLCNFGRWKEATTLLGNMMRKGIMPNVQTFNVLVDN 291

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK G   RA  ++   +  G  P   TY  ++ G C  S +  A KV + M+ K  +  
Sbjct: 292 FCKDGMISRAKTIMGFMVHVGVEPDVVTYNSVISGHCLLSQMGDAVKVFELMIHKGFLPN 351

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               +  +   C  KN  + L +L  M+ +   PDV+T +T+I GFCK G+ E A ++  
Sbjct: 352 LVTYSSLIHGWCKTKNINKALFLLGEMVNSGLNPDVVTWSTLIGGFCKAGKPEAAKEL-- 409

Query: 304 DMVAGKFCA-------PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
                 FC        P+  T   I+ GL       EA++ L++ M +      +V YN 
Sbjct: 410 ------FCTMHEHDQHPNLQTCAIILDGLFKCQFHSEAIS-LFREMEKMNLELNVVIYNI 462

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416
           VL G+    ++ +A+E+F+C+   G+  D   Y  +I GLC+   LD+A+     +    
Sbjct: 463 VLDGMCSFGKLNDAQELFSCLPSKGIKIDVVAYTTMIKGLCKEGLLDDAENLLMKMEENG 522

Query: 417 NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
            + + + Y   ++GL +   I  +  +L  +   G++ +     ++I 
Sbjct: 523 CLPNEFTYNVFVRGLLQRYDISRSTKYLLLMKGKGLSADATTTELLIS 570



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 110/413 (26%), Positives = 180/413 (43%), Gaps = 42/413 (10%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           MD LC    V EA  LF  M S+G  P++V+Y +LIHG C  G    A  +   M   G+
Sbjct: 219 MDSLCKDGMVCEALNLFSGMTSKGIQPDLVAYNSLIHGLCNFGRWKEATTLLGNMMRKGI 278

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +PN  T++VLV    +   + RA  +M      +  E D+   N+  +            
Sbjct: 279 MPNVQTFNVLVDNFCKDGMISRAKTIM-GFMVHVGVEPDVVTYNSVIS------------ 325

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                                 GH     C   +   A +V  +M  +G  P+LV+Y+S+
Sbjct: 326 ----------------------GH-----CLLSQMGDAVKVFELMIHKGFLPNLVTYSSL 358

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +HG CK     +A  LL E +  G  P   T+  L+ G C     E A+++   M     
Sbjct: 359 IHGWCKTKNINKALFLLGEMVNSGLNPDVVTWSTLIGGFCKAGKPEAAKELFCTMHEHDQ 418

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
               + C I L  L   +  +E +++   M +   + +V+  N V++G C  G++ +A +
Sbjct: 419 HPNLQTCAIILDGLFKCQFHSEAISLFREMEKMNLELNVVIYNIVLDGMCSFGKLNDAQE 478

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           + +  +  K    D V +TT+I GL   G + +A NLL + M + G  P   TYN  +RG
Sbjct: 479 LFS-CLPSKGIKIDVVAYTTMIKGLCKEGLLDDAENLLMK-MEENGCLPNEFTYNVFVRG 536

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413
           L +   +  + +    M G G+ AD+TT  ++I     + +      F  + V
Sbjct: 537 LLQRYDISRSTKYLLLMKGKGLSADATTTELLISYFSANKENSALHVFLQEFV 589



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 98/391 (25%), Positives = 177/391 (45%), Gaps = 38/391 (9%)

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
           +I+ LC          V+ VM K G+ P++V++ ++++GLC  G   RA +  +     G
Sbjct: 112 IINCLCHLNHTVFGFSVLGVMFKIGVDPTVVTFATLINGLCAEGNVARAARFADSLEDMG 171

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK-DVDRTRICNIYLRALCLIKNPTEL 263
           +  + +TY  ++ GLC   D   A   L+ +  +  D+D     +  + +LC      E 
Sbjct: 172 HQSNSYTYGAIINGLCKAGDTSGAILYLEKIKGRNCDLDVVIAYSTIMDSLCKDGMVCEA 231

Query: 264 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF 323
           LN+   M     QPD++  N++I+G C  GR +EA  +L +M+  K   P+  TF  ++ 
Sbjct: 232 LNLFSGMTSKGIQPDLVAYNSLIHGLCNFGRWKEATTLLGNMMR-KGIMPNVQTFNVLVD 290

Query: 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 383
                G I  A  ++   M   G  P +VTYN+V+ G   L ++ +A +VF  M+  G +
Sbjct: 291 NFCKDGMISRAKTIM-GFMVHVGVEPDVVTYNSVISGHCLLSQMGDAVKVFELMIHKGFL 349

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGK------- 436
            +  TY+ +I G C++  +++A     ++V      D   ++ +I G C++GK       
Sbjct: 350 PNLVTYSSLIHGWCKTKNINKALFLLGEMVNSGLNPDVVTWSTLIGGFCKAGKPEAAKEL 409

Query: 437 ---IHE-------------------------AVHFLYELVDSGVTPNIVCYNVVIDGACK 468
              +HE                         A+    E+    +  N+V YN+V+DG C 
Sbjct: 410 FCTMHEHDQHPNLQTCAIILDGLFKCQFHSEAISLFREMEKMNLELNVVIYNIVLDGMCS 469

Query: 469 LSMKREAYQILREMRKNGLNPDAVTWRILDK 499
                +A ++   +   G+  D V +  + K
Sbjct: 470 FGKLNDAQELFSCLPSKGIKIDVVAYTTMIK 500



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 70/262 (26%), Positives = 116/262 (44%), Gaps = 17/262 (6%)

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
           ++ D T++  I ++    +K+    ++++  +     +PDV TL  +IN  C +      
Sbjct: 70  REKDFTKLFGIIVK----MKHYATTISLIKHIYSLGIKPDVYTLTIIINCLCHLNHTVFG 125

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
             VL  M       P  VTF T+I GL   G +  A       +   G+     TY A++
Sbjct: 126 FSVLGVMFKIG-VDPTVVTFATLINGLCAEGNVARAAR-FADSLEDMGHQSNSYTYGAII 183

Query: 359 RGLFRLRRVE------EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI 412
            GL +           E  +  NC L + V+A    Y+ ++D LC+   + EA   +  +
Sbjct: 184 NGLCKAGDTSGAILYLEKIKGRNCDLDV-VIA----YSTIMDSLCKDGMVCEALNLFSGM 238

Query: 413 VWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMK 472
                  D   Y ++I GLC  G+  EA   L  ++  G+ PN+  +NV++D  CK  M 
Sbjct: 239 TSKGIQPDLVAYNSLIHGLCNFGRWKEATTLLGNMMRKGIMPNVQTFNVLVDNFCKDGMI 298

Query: 473 REAYQILREMRKNGLNPDAVTW 494
             A  I+  M   G+ PD VT+
Sbjct: 299 SRAKTIMGFMVHVGVEPDVVTY 320


>gi|449460167|ref|XP_004147817.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like [Cucumis sativus]
          Length = 942

 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 144/597 (24%), Positives = 260/597 (43%), Gaps = 110/597 (18%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C   RV EA     +M+     PNVV+Y +LI GY   G++  A KV   M   G+  NS
Sbjct: 267 CKEGRVDEAFNFVKEMERSCCEPNVVTYNSLIDGYVSLGDVCGAKKVLALMSEKGIPENS 326

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
            TY++L++G  +   +E+A  L+  + E+     +L V+   +  L+ + C  G V++  
Sbjct: 327 RTYTLLIKGYCKRGQMEQAEKLIGCMMEK-----NLFVDEHVYGVLIHAYCTAGRVDDAL 381

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
           RI + M +         C  +I+  C+ G  + A+ V+  M+   L P    YN+++ G 
Sbjct: 382 RIRDAMLKVGLKMNTVICNSLINGYCKLGHVNKAAEVLVSMKDWNLKPDSYGYNTLLDGF 441

Query: 185 CKHGGCMRAYQLLEE----GIQF-------------------------------GYLPSE 209
           CK    ++A++L +E    G+ F                               G  P+E
Sbjct: 442 CKQEDFIKAFKLCDEMHNKGVNFTVVTYNTLLKNLFHVGHVEHALHIWNLMHKRGVAPNE 501

Query: 210 HTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVF 269
            TY  L++        ++A  + +  LSK       + N  +   C ++   +   + + 
Sbjct: 502 VTYCTLLDAFFKVGTFDRAMMIWKDALSKGFTKSITLYNTMICGFCKMEKLVQAQEIFLK 561

Query: 270 MLQTQCQPDVITLNTVINGFCKMGRIEEALKV---------------LNDMVAGKF---- 310
           M +    PD IT  T+I+G+CK+G + EALK+                N ++ G F    
Sbjct: 562 MKELGFPPDEITYRTLIDGYCKVGNLVEALKLKDMSERDGISSSTEMYNSLITGVFRSEE 621

Query: 311 ---------------CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN 355
                           +P+ VT+ ++I G  + G + +A N  ++ M  +G +P I+  +
Sbjct: 622 LQKLNGLLAEMKNRELSPNVVTYGSLIAGWCDKGMMDKAYNAYFK-MIDKGIAPNIIIGS 680

Query: 356 AVLRGLFRLRRVEEAKEVFNCMLGIGVVA------------------------------- 384
            ++  L+R  +++EA  + + +  I  +A                               
Sbjct: 681 KIVSSLYRHGKIDEANLILHQIADIDPIAAHAHSVELPKSDLRHLETQKIVDSFGKKAMS 740

Query: 385 ----DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEA 440
               ++  Y I I GLC+S  +D+ +R   D++      DNY Y ++I      GK++EA
Sbjct: 741 IPISNNIVYNIAITGLCKSKNIDDVRRILSDLLLKGFCPDNYTYCSLIHACSAVGKVNEA 800

Query: 441 VHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
                +++++G+ PNIV YN +I+G CK      A ++  ++ + GL+P  VT+  L
Sbjct: 801 FCLRDDMINAGLVPNIVVYNALINGLCKSGNLDRARRLFNKLARKGLSPTVVTYNTL 857



 Score =  161 bits (407), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 119/512 (23%), Positives = 220/512 (42%), Gaps = 77/512 (15%)

Query: 16  LFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVL 75
           +F +M   G VP++ S  +L+    + GE   A  V+++M   G+LP+  +Y+++V    
Sbjct: 208 VFDNMGKCGRVPSLRSCNSLLSNLVQNGEAFKALLVYEQMIALGILPDIFSYTIMV---- 263

Query: 76  RTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKS 135
                                               ++ C+EG V+E F   ++M +   
Sbjct: 264 ------------------------------------NAYCKEGRVDEAFNFVKEMERSCC 287

Query: 136 VNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQ 195
                    +ID     G   GA +V+ +M ++G+  +  +Y  ++ G CK G   +A +
Sbjct: 288 EPNVVTYNSLIDGYVSLGDVCGAKKVLALMSEKGIPENSRTYTLLIKGYCKRGQMEQAEK 347

Query: 196 LLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALC 255
           L+   ++      EH Y VL+   C    ++ A ++   ML       T ICN  +   C
Sbjct: 348 LIGCMMEKNLFVDEHVYGVLIHAYCTAGRVDDALRIRDAMLKVGLKMNTVICNSLINGYC 407

Query: 256 LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK------------------------ 291
            + +  +   VLV M     +PD    NT+++GFCK                        
Sbjct: 408 KLGHVNKAAEVLVSMKDWNLKPDSYGYNTLLDGFCKQEDFIKAFKLCDEMHNKGVNFTVV 467

Query: 292 -----------MGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQ 340
                      +G +E AL + N ++  +  AP+ VT+ T++     VG    A+ ++++
Sbjct: 468 TYNTLLKNLFHVGHVEHALHIWN-LMHKRGVAPNEVTYCTLLDAFFKVGTFDRAM-MIWK 525

Query: 341 VMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN 400
               +G++  I  YN ++ G  ++ ++ +A+E+F  M  +G   D  TY  +IDG C+  
Sbjct: 526 DALSKGFTKSITLYNTMICGFCKMEKLVQAQEIFLKMKELGFPPDEITYRTLIDGYCKVG 585

Query: 401 QLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYN 460
            L EA +  D            +Y ++I G+ RS ++ +    L E+ +  ++PN+V Y 
Sbjct: 586 NLVEALKLKDMSERDGISSSTEMYNSLITGVFRSEELQKLNGLLAEMKNRELSPNVVTYG 645

Query: 461 VVIDGACKLSMKREAYQILREMRKNGLNPDAV 492
            +I G C   M  +AY    +M   G+ P+ +
Sbjct: 646 SLIAGWCDKGMMDKAYNAYFKMIDKGIAPNII 677



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 115/519 (22%), Positives = 215/519 (41%), Gaps = 62/519 (11%)

Query: 17  FFDMKSR--GHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGV 74
           FF + S+     P+V SY  ++H   R        +++ E+R   V  N L   VL +  
Sbjct: 118 FFKLASKQPKFRPDVSSYCKIVHILSRA-------RMYKEVR---VYLNELV--VLCKN- 164

Query: 75  LRTRDVERANVLMFKLWERMKE-EEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQG 133
                    N +   +W+ +     + S +   F  ++     +G       + ++M + 
Sbjct: 165 ---------NYIASAVWDELVSVYREFSFSPTVFDMILKVFAEKGMTKFALCVFDNMGKC 215

Query: 134 KSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRA 193
             V    +C  ++ +L ++G    A  V   M   G+ P + SY  +V+  CK G    A
Sbjct: 216 GRVPSLRSCNSLLSNLVQNGEAFKALLVYEQMIALGILPDIFSYTIMVNAYCKEGRVDEA 275

Query: 194 YQLLEE--------------GIQFGYLP---------------------SEHTYKVLVEG 218
           +  ++E               +  GY+                      +  TY +L++G
Sbjct: 276 FNFVKEMERSCCEPNVVTYNSLIDGYVSLGDVCGAKKVLALMSEKGIPENSRTYTLLIKG 335

Query: 219 LCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPD 278
            C    +E+A K++  M+ K       +  + + A C      + L +   ML+   + +
Sbjct: 336 YCKRGQMEQAEKLIGCMMEKNLFVDEHVYGVLIHAYCTAGRVDDALRIRDAMLKVGLKMN 395

Query: 279 VITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLL 338
            +  N++ING+CK+G + +A +VL  M       PD+  + T++ G        +A  L 
Sbjct: 396 TVICNSLINGYCKLGHVNKAAEVLVSMKDWNL-KPDSYGYNTLLDGFCKQEDFIKAFKLC 454

Query: 339 YQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE 398
            + M  +G +  +VTYN +L+ LF +  VE A  ++N M   GV  +  TY  ++D   +
Sbjct: 455 DE-MHNKGVNFTVVTYNTLLKNLFHVGHVEHALHIWNLMHKRGVAPNEVTYCTLLDAFFK 513

Query: 399 SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVC 458
               D A   W D +         +Y  MI G C+  K+ +A     ++ + G  P+ + 
Sbjct: 514 VGTFDRAMMIWKDALSKGFTKSITLYNTMICGFCKMEKLVQAQEIFLKMKELGFPPDEIT 573

Query: 459 YNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           Y  +IDG CK+    EA ++     ++G++     +  L
Sbjct: 574 YRTLIDGYCKVGNLVEALKLKDMSERDGISSSTEMYNSL 612



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 121/489 (24%), Positives = 218/489 (44%), Gaps = 48/489 (9%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C      +A KL  +M ++G    VV+Y TL+      G ++ A  +++ M   GV
Sbjct: 438 LDGFCKQEDFIKAFKLCDEMHNKGVNFTVVTYNTLLKNLFHVGHVEHALHIWNLMHKRGV 497

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLM---------------------FKLWERMKEEED 99
            PN +TY  L+    +    +RA ++                      F   E++ + ++
Sbjct: 498 APNEVTYCTLLDAFFKVGTFDRAMMIWKDALSKGFTKSITLYNTMICGFCKMEKLVQAQE 557

Query: 100 LSV---------NNAAFANLVDSLCREGYVNEVFRIAEDMPQ--GKSVNEEFACGHMIDS 148
           + +         +   +  L+D  C+ G + E  ++ +DM +  G S + E     +I  
Sbjct: 558 IFLKMKELGFPPDEITYRTLIDGYCKVGNLVEALKL-KDMSERDGISSSTEMY-NSLITG 615

Query: 149 LCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPS 208
           + RS      + ++  M+ R L+P++V+Y S++ G C  G   +AY    + I  G  P+
Sbjct: 616 VFRSEELQKLNGLLAEMKNRELSPNVVTYGSLIAGWCDKGMMDKAYNAYFKMIDKGIAPN 675

Query: 209 EHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLV 268
                 +V  L     +++A  +L   ++  D       ++ L    L    T+ + V  
Sbjct: 676 IIIGSKIVSSLYRHGKIDEANLILH-QIADIDPIAAHAHSVELPKSDLRHLETQKI-VDS 733

Query: 269 FMLQTQCQP--DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
           F  +    P  + I  N  I G CK   I++  ++L+D++   FC PD  T+ ++I    
Sbjct: 734 FGKKAMSIPISNNIVYNIAITGLCKSKNIDDVRRILSDLLLKGFC-PDNYTYCSLIHACS 792

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
            VG++ EA   L   M   G  P IV YNA++ GL +   ++ A+ +FN +   G+    
Sbjct: 793 AVGKVNEAF-CLRDDMINAGLVPNIVVYNALINGLCKSGNLDRARRLFNKLARKGLSPTV 851

Query: 387 TTYAIVIDGLCESNQLDEAKRFWDDI----VWPSNIHDNYVYAAMIKGLCRSGKIHEAVH 442
            TY  +IDG C+  +  EA    D +    + PS+I     Y+ +I GL   GK  ++V 
Sbjct: 852 VTYNTLIDGYCKGGRTTEALELKDKMREEGICPSSI----TYSTLIHGLYMEGKSEQSVG 907

Query: 443 FLYELVDSG 451
            L E++ +G
Sbjct: 908 LLNEMMKAG 916



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 134/261 (51%), Gaps = 6/261 (2%)

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVF--MLQTQCQPDVITLNTVINGFCKMGRIEEA 298
           V   R CN  L  L  ++N      +LV+  M+     PD+ +   ++N +CK GR++EA
Sbjct: 218 VPSLRSCNSLLSNL--VQNGEAFKALLVYEQMIALGILPDIFSYTIMVNAYCKEGRVDEA 275

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
              + +M     C P+ VT+ ++I G +++G +  A  +L  +M ++G      TY  ++
Sbjct: 276 FNFVKEM-ERSCCEPNVVTYNSLIDGYVSLGDVCGAKKVL-ALMSEKGIPENSRTYTLLI 333

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
           +G  +  ++E+A+++  CM+   +  D   Y ++I   C + ++D+A R  D ++     
Sbjct: 334 KGYCKRGQMEQAEKLIGCMMEKNLFVDEHVYGVLIHAYCTAGRVDDALRIRDAMLKVGLK 393

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI 478
            +  +  ++I G C+ G +++A   L  + D  + P+   YN ++DG CK     +A+++
Sbjct: 394 MNTVICNSLINGYCKLGHVNKAAEVLVSMKDWNLKPDSYGYNTLLDGFCKQEDFIKAFKL 453

Query: 479 LREMRKNGLNPDAVTWRILDK 499
             EM   G+N   VT+  L K
Sbjct: 454 CDEMHNKGVNFTVVTYNTLLK 474



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 65/131 (49%), Gaps = 11/131 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC    +  A +LF  +  +G  P VV+Y TLI GYC+ G    A ++ D+MR  G+
Sbjct: 823 INGLCKSGNLDRARRLFNKLARKGLSPTVVTYNTLIDGYCKGGRTTEALELKDKMREEGI 882

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+S+TYS L+ G+      E++  L   L E MK  +  SV        +D L    YV
Sbjct: 883 CPSSITYSTLIHGLYMEGKSEQSVGL---LNEMMKAGKGSSV--------MDPLVARAYV 931

Query: 121 NEVFRIAEDMP 131
               + +E  P
Sbjct: 932 KWRDKQSESAP 942



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 81/168 (48%), Gaps = 2/168 (1%)

Query: 338 LYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLC 397
           L  V  +  +SP +  ++ +L+        + A  VF+ M   G V    +   ++  L 
Sbjct: 175 LVSVYREFSFSPTV--FDMILKVFAEKGMTKFALCVFDNMGKCGRVPSLRSCNSLLSNLV 232

Query: 398 ESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIV 457
           ++ +  +A   ++ ++    + D + Y  M+   C+ G++ EA +F+ E+  S   PN+V
Sbjct: 233 QNGEAFKALLVYEQMIALGILPDIFSYTIMVNAYCKEGRVDEAFNFVKEMERSCCEPNVV 292

Query: 458 CYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
            YN +IDG   L     A ++L  M + G+  ++ T+ +L K +  RG
Sbjct: 293 TYNSLIDGYVSLGDVCGAKKVLALMSEKGIPENSRTYTLLIKGYCKRG 340


>gi|242067349|ref|XP_002448951.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
 gi|241934794|gb|EES07939.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
          Length = 799

 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 132/506 (26%), Positives = 233/506 (46%), Gaps = 7/506 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC       A  +F  M   G  PN  +Y  LIHGY   G+     ++ +EM   G+
Sbjct: 241 IDGLCKAQLFDRAEGVFQQMIDNGFKPNNYTYNCLIHGYLSIGKWKEVVQMLEEMSARGL 300

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+  TY  L+  + +      A      +  +      +    + +  L+     +G +
Sbjct: 301 KPDCYTYGSLLNYLCKNGRCREARFFFDSMIRK-----GIKPKVSTYGILIHGYATKGAL 355

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E+    + M +     +         +  + G    A  +   MR+ GL+P++V+Y ++
Sbjct: 356 SEMHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGAL 415

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +  LCK G    A     + I  G  P+   +  LV GLC     E+A +++  ML +  
Sbjct: 416 IDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGI 475

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                  N  +  LC +    E   ++  M     +PD  +   +I+G+C  GR +EA K
Sbjct: 476 CPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLTGRTDEAEK 535

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           V + MV+    +P  VT+ T++ G  +  RI +A   L++ M ++G +PG+VTYN +L G
Sbjct: 536 VFDGMVSIGL-SPTEVTYNTLLHGYCSASRIDDAY-CLFREMLRKGVTPGVVTYNTILHG 593

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           LF+ +R  EAKE++  M+  G   D  TY I+++GLC+SN +DEA + +  +       +
Sbjct: 594 LFQTKRFSEAKELYLNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLN 653

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              +  MI  L + G+  +A+     +  +G+ PN+V Y +V +   +     E   +  
Sbjct: 654 IITFTIMIGALLKGGRKEDAMDLFAAIPANGLVPNVVTYRLVAENLIEEGSLEEFDSLFS 713

Query: 481 EMRKNGLNPDAVTWRILDKLHGNRGN 506
            M KNG  P++     L +   +RG+
Sbjct: 714 AMEKNGTAPNSQMLNALVRRLLHRGD 739



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 133/532 (25%), Positives = 236/532 (44%), Gaps = 45/532 (8%)

Query: 4   LCGLSRVGEAHKLFF---DMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           LC   R  EA +L     D   R   PNVVSY+ +I+G+   G++D  Y +F EM   G+
Sbjct: 171 LCNEKRAEEALELLHMMADDHGRRCPPNVVSYSIVINGFFTEGQVDKPYNLFLEMIDRGI 230

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TY+ ++ G+ + +  +RA      ++++M +      NN  +  L+      G  
Sbjct: 231 PPDVVTYTTVIDGLCKAQLFDRAE----GVFQQMIDN-GFKPNNYTYNCLIHGYLSIGKW 285

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            EV ++ E+M       + +  G +++ LC++GR   A      M ++G+ P + +Y  +
Sbjct: 286 KEVVQMLEEMSARGLKPDCYTYGSLLNYLCKNGRCREARFFFDSMIRKGIKPKVSTYGIL 345

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEH------------------------------ 210
           +HG    G     +  L+  ++ G  P  H                              
Sbjct: 346 IHGYATKGALSEMHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGL 405

Query: 211 -----TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 265
                 Y  L++ LC    ++ A      M+++       + N  +  LC +        
Sbjct: 406 SPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEE 465

Query: 266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 325
           ++  ML     P+ +  NT+I   C +GR+ E  +++ D++      PDA ++T +I G 
Sbjct: 466 LVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLI-DLMEHVGVRPDAFSYTPLISGY 524

Query: 326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 385
              GR  EA   ++  M   G SP  VTYN +L G     R+++A  +F  ML  GV   
Sbjct: 525 CLTGRTDEA-EKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPG 583

Query: 386 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY 445
             TY  ++ GL ++ +  EAK  + +++      D Y Y  ++ GLC+S  + EA     
Sbjct: 584 VVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQ 643

Query: 446 ELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            L   G+  NI+ + ++I    K   K +A  +   +  NGL P+ VT+R++
Sbjct: 644 SLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIPANGLVPNVVTYRLV 695



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 125/499 (25%), Positives = 221/499 (44%), Gaps = 23/499 (4%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCR---TGEMDVAYKVFDEM-RHCG--VLPNSL 65
           +A KLF ++       +V ++  L+    R   +   ++A   F+ M R C   V PN  
Sbjct: 32  DALKLFDELLHHARPASVRAFNHLLTAVSRARCSSASELAVSHFNRMVRECSDKVAPNLC 91

Query: 66  TYSVLVRGVLRTRDVER---ANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           TYS+L+    R   +E    A  L+ K   RM        ++ A   L+  LC    V E
Sbjct: 92  TYSILIGRFCRMGHLEHGFAAFGLILKTGWRM--------DHIAINQLLKGLCHGKRVGE 143

Query: 123 VFRIA-EDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVM---RKRGLTPSLVSYN 178
              +  + MP+   + +  +   ++  LC   R   A  ++++M     R   P++VSY+
Sbjct: 144 AMDVLLQRMPELGCMPDTVSYTILLKGLCNEKRAEEALELLHMMADDHGRRCPPNVVSYS 203

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
            +++G    G   + Y L  E I  G  P   TY  +++GLC     ++A  V Q M+  
Sbjct: 204 IVINGFFTEGQVDKPYNLFLEMIDRGIPPDVVTYTTVIDGLCKAQLFDRAEGVFQQMIDN 263

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
                    N  +     I    E++ +L  M     +PD  T  +++N  CK GR  EA
Sbjct: 264 GFKPNNYTYNCLIHGYLSIGKWKEVVQMLEEMSARGLKPDCYTYGSLLNYLCKNGRCREA 323

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
               + M+  K   P   T+  +I G    G + E  + L  +M + G SP    +N   
Sbjct: 324 RFFFDSMIR-KGIKPKVSTYGILIHGYATKGALSEMHSFL-DLMVENGLSPDHHIFNIFF 381

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
               +   +++A ++FN M   G+  +   Y  +ID LC+  ++D+A+  ++ ++     
Sbjct: 382 SAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVT 441

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI 478
            +  V+ +++ GLC   K   A   +YE++D G+ PN V +N +I   C +    E  ++
Sbjct: 442 PNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRL 501

Query: 479 LREMRKNGLNPDAVTWRIL 497
           +  M   G+ PDA ++  L
Sbjct: 502 IDLMEHVGVRPDAFSYTPL 520



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 106/408 (25%), Positives = 179/408 (43%), Gaps = 44/408 (10%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           CG+  + +A  +F  M+  G  PNVV+Y  LI   C+ G +D A   F++M + GV PN 
Sbjct: 387 CGM--IDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNI 444

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           + ++ LV G+      ERA  L++++ +     + +  N   F  L+ +LC  G V E  
Sbjct: 445 VVFNSLVYGLCTVDKWERAEELVYEMLD-----QGICPNAVFFNTLICNLCNVGRVME-- 497

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
                                       GR     R++ +M   G+ P   SY  ++ G 
Sbjct: 498 ----------------------------GR-----RLIDLMEHVGVRPDAFSYTPLISGY 524

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
           C  G    A ++ +  +  G  P+E TY  L+ G C  S ++ A  + + ML K      
Sbjct: 525 CLTGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGV 584

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
              N  L  L   K  +E   + + M+ +  + D+ T N ++NG CK   ++EA K+   
Sbjct: 585 VTYNTILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQS 644

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
           + + K    + +TFT +I  LL  GR ++A++L +  +P  G  P +VTY  V   L   
Sbjct: 645 LCS-KGLQLNIITFTIMIGALLKGGRKEDAMDL-FAAIPANGLVPNVVTYRLVAENLIEE 702

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI 412
             +EE   +F+ M   G   +S     ++  L     +  A  +   +
Sbjct: 703 GSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRAGAYLSKL 750



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 74/239 (30%), Positives = 119/239 (49%), Gaps = 2/239 (0%)

Query: 269 FMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNV 328
            +L+T  + D I +N ++ G C   R+ EA+ VL   +    C PD V++T ++ GL N 
Sbjct: 115 LILKTGWRMDHIAINQLLKGLCHGKRVGEAMDVLLQRMPELGCMPDTVSYTILLKGLCNE 174

Query: 329 GRIQEALNLLYQVMPQRGY--SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
            R +EAL LL+ +    G    P +V+Y+ V+ G F   +V++   +F  M+  G+  D 
Sbjct: 175 KRAEEALELLHMMADDHGRRCPPNVVSYSIVINGFFTEGQVDKPYNLFLEMIDRGIPPDV 234

Query: 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE 446
            TY  VIDGLC++   D A+  +  ++      +NY Y  +I G    GK  E V  L E
Sbjct: 235 VTYTTVIDGLCKAQLFDRAEGVFQQMIDNGFKPNNYTYNCLIHGYLSIGKWKEVVQMLEE 294

Query: 447 LVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
           +   G+ P+   Y  +++  CK    REA      M + G+ P   T+ IL   +  +G
Sbjct: 295 MSARGLKPDCYTYGSLLNYLCKNGRCREARFFFDSMIRKGIKPKVSTYGILIHGYATKG 353



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 41/85 (48%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           R  +A  LF  + + G VPNVV+Y  +       G ++    +F  M   G  PNS   +
Sbjct: 669 RKEDAMDLFAAIPANGLVPNVVTYRLVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLN 728

Query: 69  VLVRGVLRTRDVERANVLMFKLWER 93
            LVR +L   D+ RA   + KL ER
Sbjct: 729 ALVRRLLHRGDISRAGAYLSKLDER 753


>gi|357481045|ref|XP_003610808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512143|gb|AES93766.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1084

 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 132/516 (25%), Positives = 238/516 (46%), Gaps = 63/516 (12%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           ++G   ++   M + G  PN   + +LIH YC++ +   AYK+F +M  CG  P  L Y+
Sbjct: 329 QLGRCKRILSMMITEGCYPNREIFNSLIHAYCKSRDYSYAYKLFKKMIKCGCQPGYLVYN 388

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEE-DLSV------------------------- 102
           + +  V    +   +++L   L E+   E  DL V                         
Sbjct: 389 IFIGSVCSNEEQPSSDIL--DLVEKAYSEMLDLGVVLNKVNVSNFARCLCGAGKFDQAFK 446

Query: 103 ------------NNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC 150
                       +++ ++ ++  LC    V + F + E+M +   V   +    +IDS C
Sbjct: 447 IICEMMGKGFVPDDSTYSKVIGFLCDASKVEKAFSLFEEMKRNGIVPSVYTYTILIDSFC 506

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
           ++G    A +    M  +G TP++V+Y +++H   K      A +L E  +  G  P+  
Sbjct: 507 KAGLIQQARKWFDEMLHKGCTPNVVTYTALIHAYLKAKQMPVADELFEMMLLEGCKPNVV 566

Query: 211 TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM 270
           TY  L++G C    +EKA                  C IY R    I++    ++    +
Sbjct: 567 TYTALIDGHCKAGQIEKA------------------CQIYARMRGDIESSD--MDKYFKL 606

Query: 271 LQTQCQ-PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG 329
               C+ P+VIT   +++G CK  R++EA ++L+ M+A   C P+ + +  +I G   +G
Sbjct: 607 DHNNCEGPNVITYGALVDGLCKANRVKEAHELLDTMLAHG-CEPNQIVYDAVIDGFCKIG 665

Query: 330 RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTY 389
           ++Q+A   ++  M +RGYSP + TY++ +  LF+  R++   +V + ML      +   Y
Sbjct: 666 KLQDAQE-VFTKMSERGYSPNLYTYSSFIDCLFKDNRLDLVLKVLSKMLENSCTPNVVIY 724

Query: 390 AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449
             ++DGLC+  + DEA +    +       +   Y AMI G  +SGKI + +    ++  
Sbjct: 725 TEMVDGLCKIGKTDEAYKLMLKMEEKGCNPNVVTYTAMIDGFGKSGKIEQCLELFRDMCS 784

Query: 450 SGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN 485
            G  PN + Y V+I+  C   +  EAY++L EM++ 
Sbjct: 785 KGCAPNFITYRVLINHCCSNGLLDEAYKLLDEMKQT 820



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 135/493 (27%), Positives = 237/493 (48%), Gaps = 27/493 (5%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC  S+V +A  LF +MK  G VP+V +YT LI  +C+ G +  A K FDEM H G  PN
Sbjct: 470 LCDASKVEKAFSLFEEMKRNGIVPSVYTYTILIDSFCKAGLIQQARKWFDEMLHKGCTPN 529

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY+ L+   L+ + +  A+ L       M   E    N   +  L+D  C+ G + + 
Sbjct: 530 VVTYTALIHAYLKAKQMPVADELF-----EMMLLEGCKPNVVTYTALIDGHCKAGQIEKA 584

Query: 124 FRIAEDMP---QGKSVNEEFACGH-------------MIDSLCRSGRNHGASRVVYVMRK 167
            +I   M    +   +++ F   H             ++D LC++ R   A  ++  M  
Sbjct: 585 CQIYARMRGDIESSDMDKYFKLDHNNCEGPNVITYGALVDGLCKANRVKEAHELLDTMLA 644

Query: 168 RGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEK 227
            G  P+ + Y++++ G CK G    A ++  +  + GY P+ +TY   ++ L  ++ L+ 
Sbjct: 645 HGCEPNQIVYDAVIDGFCKIGKLQDAQEVFTKMSERGYSPNLYTYSSFIDCLFKDNRLDL 704

Query: 228 ARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVIN 287
             KVL  ML         I    +  LC I    E   +++ M +  C P+V+T   +I+
Sbjct: 705 VLKVLSKMLENSCTPNVVIYTEMVDGLCKIGKTDEAYKLMLKMEEKGCNPNVVTYTAMID 764

Query: 288 GFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGY 347
           GF K G+IE+ L++  DM + K CAP+ +T+  +I    + G + EA  LL + M Q  +
Sbjct: 765 GFGKSGKIEQCLELFRDMCS-KGCAPNFITYRVLINHCCSNGLLDEAYKLLDE-MKQTYW 822

Query: 348 SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKR 407
              I+++  ++ G F    +     +        V  DS  Y I+ID   ++ +L+ A  
Sbjct: 823 PKHILSHRKIIEG-FSQEFITSIGLLDELSENESVPVDS-LYRILIDNYIKAGRLEVALD 880

Query: 408 FWDDI-VWPSN-IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDG 465
             ++I   PS+ + + Y+YA++I+ L  + K+ +A+     ++   V P +     +I G
Sbjct: 881 LLEEISSSPSHAVSNKYLYASLIENLSHASKVDKALELYASMISKNVVPELSILVHLIKG 940

Query: 466 ACKLSMKREAYQI 478
             K+   +EA Q+
Sbjct: 941 LIKVDKWQEALQL 953



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 129/578 (22%), Positives = 232/578 (40%), Gaps = 101/578 (17%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           +K  G+ P+  +Y  LI  + R  ++D AY V  EM     + +  T S     + +   
Sbjct: 202 LKDFGYKPSQTTYNALIQVFLRADKLDTAYLVKREMLSYAFVMDRYTLSCFAYSLCKGGK 261

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
              A       ++ + E ED   +   +  +V  LC      E   I   M     +   
Sbjct: 262 CREA-------FDLIDEAEDFVPDTVFYNRMVSGLCEASLFEEAMDILHRMRSSSCIPNV 314

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
                ++    R G+     R++ +M   G  P+   +NS++H  CK      AY+L ++
Sbjct: 315 VTYRILLSGCLRKGQLGRCKRILSMMITEGCYPNREIFNSLIHAYCKSRDYSYAYKLFKK 374

Query: 200 GIQFGYLPSEHTYKVLVEG----------------------------------------- 218
            I+ G  P    Y + +                                           
Sbjct: 375 MIKCGCQPGYLVYNIFIGSVCSNEEQPSSDILDLVEKAYSEMLDLGVVLNKVNVSNFARC 434

Query: 219 LCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPD 278
           LCG    ++A K++  M+ K  V      +  +  LC      +  ++   M +    P 
Sbjct: 435 LCGAGKFDQAFKIICEMMGKGFVPDDSTYSKVIGFLCDASKVEKAFSLFEEMKRNGIVPS 494

Query: 279 VITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLL 338
           V T   +I+ FCK G I++A K  ++M+  K C P+ VT+T +I   L   ++  A + L
Sbjct: 495 VYTYTILIDSFCKAGLIQQARKWFDEMLH-KGCTPNVVTYTALIHAYLKAKQMPVA-DEL 552

Query: 339 YQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS------------ 386
           +++M   G  P +VTY A++ G  +  ++E+A +++  M G    +D             
Sbjct: 553 FEMMLLEGCKPNVVTYTALIDGHCKAGQIEKACQIYARMRGDIESSDMDKYFKLDHNNCE 612

Query: 387 ----TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEA-- 440
                TY  ++DGLC++N++ EA    D ++      +  VY A+I G C+ GK+ +A  
Sbjct: 613 GPNVITYGALVDGLCKANRVKEAHELLDTMLAHGCEPNQIVYDAVIDGFCKIGKLQDAQE 672

Query: 441 ---------------------------------VHFLYELVDSGVTPNIVCYNVVIDGAC 467
                                            +  L +++++  TPN+V Y  ++DG C
Sbjct: 673 VFTKMSERGYSPNLYTYSSFIDCLFKDNRLDLVLKVLSKMLENSCTPNVVIYTEMVDGLC 732

Query: 468 KLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
           K+    EAY+++ +M + G NP+ VT+  +    G  G
Sbjct: 733 KIGKTDEAYKLMLKMEEKGCNPNVVTYTAMIDGFGKSG 770



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 122/532 (22%), Positives = 224/532 (42%), Gaps = 59/532 (11%)

Query: 35  LIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKL---- 90
           L+   CR G  ++A +    ++  G  P+  TY+ L++  LR   ++ A ++  ++    
Sbjct: 182 LVRKCCRNGWWNMALEELGRLKDFGYKPSQTTYNALIQVFLRADKLDTAYLVKREMLSYA 241

Query: 91  ------------------------WERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRI 126
                                   ++ + E ED   +   +  +V  LC      E   I
Sbjct: 242 FVMDRYTLSCFAYSLCKGGKCREAFDLIDEAEDFVPDTVFYNRMVSGLCEASLFEEAMDI 301

Query: 127 AEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK 186
              M     +        ++    R G+     R++ +M   G  P+   +NS++H  CK
Sbjct: 302 LHRMRSSSCIPNVVTYRILLSGCLRKGQLGRCKRILSMMITEGCYPNREIFNSLIHAYCK 361

Query: 187 HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESD------LEKARKVLQFMLSKKD 240
                 AY+L ++ I+ G  P    Y + +  +C   +      L+   K    ML    
Sbjct: 362 SRDYSYAYKLFKKMIKCGCQPGYLVYNIFIGSVCSNEEQPSSDILDLVEKAYSEMLDLGV 421

Query: 241 V-DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
           V ++  + N + R LC      +   ++  M+     PD  T + VI   C   ++E+A 
Sbjct: 422 VLNKVNVSN-FARCLCGAGKFDQAFKIICEMMGKGFVPDDSTYSKVIGFLCDASKVEKAF 480

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
            +  +M       P   T+T +I      G IQ+A    +  M  +G +P +VTY A++ 
Sbjct: 481 SLFEEMKRNGI-VPSVYTYTILIDSFCKAGLIQQARK-WFDEMLHKGCTPNVVTYTALIH 538

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA----KRFWDDIVWP 415
              + +++  A E+F  ML  G   +  TY  +IDG C++ Q+++A     R   DI   
Sbjct: 539 AYLKAKQMPVADELFEMMLLEGCKPNVVTYTALIDGHCKAGQIEKACQIYARMRGDI--E 596

Query: 416 SNIHDNY--------------VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNV 461
           S+  D Y               Y A++ GLC++ ++ EA   L  ++  G  PN + Y+ 
Sbjct: 597 SSDMDKYFKLDHNNCEGPNVITYGALVDGLCKANRVKEAHELLDTMLAHGCEPNQIVYDA 656

Query: 462 VIDGACKLSMKREAYQILREMRKNGLNPDAVTW-RILDKLHGNRGNDFGLRI 512
           VIDG CK+   ++A ++  +M + G +P+  T+   +D L  +   D  L++
Sbjct: 657 VIDGFCKIGKLQDAQEVFTKMSERGYSPNLYTYSSFIDCLFKDNRLDLVLKV 708



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 80/326 (24%), Positives = 146/326 (44%), Gaps = 10/326 (3%)

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
           N +V   C++G    A + L     FGY PS+ TY  L++       L+ A  V + MLS
Sbjct: 180 NFLVRKCCRNGWWNMALEELGRLKDFGYKPSQTTYNALIQVFLRADKLDTAYLVKREMLS 239

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
              V      + +  +LC      E  +++         PD +  N +++G C+    EE
Sbjct: 240 YAFVMDRYTLSCFAYSLCKGGKCREAFDLID--EAEDFVPDTVFYNRMVSGLCEASLFEE 297

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           A+ +L+ M +   C P+ VT+  ++ G L  G++     +L  +M   G  P    +N++
Sbjct: 298 AMDILHRMRSSS-CIPNVVTYRILLSGCLRKGQLGRCKRIL-SMMITEGCYPNREIFNSL 355

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLC------ESNQLDEAKRFWDD 411
           +    + R    A ++F  M+  G       Y I I  +C       S+ LD  ++ + +
Sbjct: 356 IHAYCKSRDYSYAYKLFKKMIKCGCQPGYLVYNIFIGSVCSNEEQPSSDILDLVEKAYSE 415

Query: 412 IVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSM 471
           ++    + +    +   + LC +GK  +A   + E++  G  P+   Y+ VI   C  S 
Sbjct: 416 MLDLGVVLNKVNVSNFARCLCGAGKFDQAFKIICEMMGKGFVPDDSTYSKVIGFLCDASK 475

Query: 472 KREAYQILREMRKNGLNPDAVTWRIL 497
             +A+ +  EM++NG+ P   T+ IL
Sbjct: 476 VEKAFSLFEEMKRNGIVPSVYTYTIL 501


>gi|15234349|ref|NP_194530.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208278|sp|Q9SUD8.1|PP340_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g28010
 gi|4455360|emb|CAB36770.1| putative protein [Arabidopsis thaliana]
 gi|7269655|emb|CAB79603.1| putative protein [Arabidopsis thaliana]
 gi|332660020|gb|AEE85420.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 704

 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 127/492 (25%), Positives = 238/492 (48%), Gaps = 7/492 (1%)

Query: 7   LSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLT 66
           + + G A  +   M  RG   NV ++  L+ G CR  E   A  +  EMR   ++P+  +
Sbjct: 120 MRKTGFAFGVLALMLKRGFAFNVYNHNILLKGLCRNLECGKAVSLLREMRRNSLMPDVFS 179

Query: 67  YSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRI 126
           Y+ ++RG    +++E+A     +L   MK     S +   +  L+D+ C+ G ++E    
Sbjct: 180 YNTVIRGFCEGKELEKA----LELANEMKGS-GCSWSLVTWGILIDAFCKAGKMDEAMGF 234

Query: 127 AEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK 186
            ++M       +      +I   C  G       +   + +RG +P  ++YN+++ G CK
Sbjct: 235 LKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCK 294

Query: 187 HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRI 246
            G    A ++ E  I+ G  P+ +TY  L++GLCG    ++A ++L  M+ K +      
Sbjct: 295 LGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMIEKDEEPNAVT 354

Query: 247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV 306
            NI +  LC      + + ++  M + + +PD IT N ++ G C  G ++EA K+L  M+
Sbjct: 355 YNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLML 414

Query: 307 A-GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLR 365
               +  PD +++  +I GL    R+ +AL+ +Y ++ ++  +   VT N +L    +  
Sbjct: 415 KDSSYTDPDVISYNALIHGLCKENRLHQALD-IYDLLVEKLGAGDRVTTNILLNSTLKAG 473

Query: 366 RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYA 425
            V +A E++  +    +V +S TY  +IDG C++  L+ AK     +         + Y 
Sbjct: 474 DVNKAMELWKQISDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYN 533

Query: 426 AMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN 485
            ++  LC+ G + +A     E+      P++V +N++IDG+ K    + A  +L  M + 
Sbjct: 534 CLLSSLCKEGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRA 593

Query: 486 GLNPDAVTWRIL 497
           GL+PD  T+  L
Sbjct: 594 GLSPDLFTYSKL 605



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 117/483 (24%), Positives = 218/483 (45%), Gaps = 10/483 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C   ++ EA     +MK  G   ++V YT+LI G+C  GE+D    +FDE+   G 
Sbjct: 219 IDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGD 278

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P ++TY+ L+RG  +   ++ A+ +   + ER      +  N   +  L+D LC  G  
Sbjct: 279 SPCAITYNTLIRGFCKLGQLKEASEIFEFMIER-----GVRPNVYTYTGLIDGLCGVGKT 333

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E  ++   M +            +I+ LC+ G    A  +V +M+KR   P  ++YN +
Sbjct: 334 KEALQLLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNIL 393

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYL--PSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
           + GLC  G    A +LL   ++      P   +Y  L+ GLC E+ L +A  +   ++ K
Sbjct: 394 LGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQALDIYDLLVEK 453

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
                    NI L +     +  + + +   +  ++   +  T   +I+GFCK G +  A
Sbjct: 454 LGAGDRVTTNILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTAMIDGFCKTGMLNVA 513

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
             +L  M   +   P    +  ++  L   G + +A   L++ M +    P +V++N ++
Sbjct: 514 KGLLCKMRVSEL-QPSVFDYNCLLSSLCKEGSLDQAWR-LFEEMQRDNNFPDVVSFNIMI 571

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
            G  +   ++ A+ +   M   G+  D  TY+ +I+   +   LDEA  F+D +V     
Sbjct: 572 DGSLKAGDIKSAESLLVGMSRAGLSPDLFTYSKLINRFLKLGYLDEAISFFDKMVDSGFE 631

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKRE-AYQ 477
            D ++  +++K     G+  +    + +LVD  +  +      V+D  C  S   + A +
Sbjct: 632 PDAHICDSVLKYCISQGETDKLTELVKKLVDKDIVLDKELTCTVMDYMCNSSANMDLAKR 691

Query: 478 ILR 480
           +LR
Sbjct: 692 LLR 694



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 115/455 (25%), Positives = 206/455 (45%), Gaps = 23/455 (5%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C    +     LF ++  RG  P  ++Y TLI G+C+ G++  A ++F+ M   GV PN
Sbjct: 257 FCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPN 316

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             TY+ L+ G+      + A  L+  + E+ +E      N   +  +++ LC++G V + 
Sbjct: 317 VYTYTGLIDGLCGVGKTKEALQLLNLMIEKDEEP-----NAVTYNIIINKLCKDGLVADA 371

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRG--LTPSLVSYNSIV 181
             I E M + ++  +      ++  LC  G    AS+++Y+M K      P ++SYN+++
Sbjct: 372 VEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALI 431

Query: 182 HGLCKHGGCMRA---YQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
           HGLCK     +A   Y LL E +  G      T  +L+       D+ KA ++ + +   
Sbjct: 432 HGLCKENRLHQALDIYDLLVEKLGAG---DRVTTNILLNSTLKAGDVNKAMELWKQISDS 488

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNV----LVFMLQTQCQPDVITLNTVINGFCKMGR 294
           K V  +      +   C     T +LNV    L  M  ++ QP V   N +++  CK G 
Sbjct: 489 KIVRNSDTYTAMIDGFC----KTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGS 544

Query: 295 IEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTY 354
           +++A ++  +M       PD V+F  +I G L  G I+ A +LL   M + G SP + TY
Sbjct: 545 LDQAWRLFEEMQRDN-NFPDVVSFNIMIDGSLKAGDIKSAESLLVG-MSRAGLSPDLFTY 602

Query: 355 NAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVW 414
           + ++    +L  ++EA   F+ M+  G   D+     V+       + D+       +V 
Sbjct: 603 SKLINRFLKLGYLDEAISFFDKMVDSGFEPDAHICDSVLKYCISQGETDKLTELVKKLVD 662

Query: 415 PSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449
              + D  +   ++  +C S    +    L  + D
Sbjct: 663 KDIVLDKELTCTVMDYMCNSSANMDLAKRLLRVTD 697



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 120/234 (51%), Gaps = 3/234 (1%)

Query: 270 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG 329
           ML+T    + ++L+ ++  + +M +   A  VL  M+   F A +      ++ GL    
Sbjct: 98  MLETDTFINFVSLSGLLECYVQMRKTGFAFGVLALMLKRGF-AFNVYNHNILLKGLCRNL 156

Query: 330 RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTY 389
              +A++LL + M +    P + +YN V+RG    + +E+A E+ N M G G      T+
Sbjct: 157 ECGKAVSLLRE-MRRNSLMPDVFSYNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTW 215

Query: 390 AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449
            I+ID  C++ ++DEA  F  ++ +     D  VY ++I+G C  G++        E+++
Sbjct: 216 GILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLE 275

Query: 450 SGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWR-ILDKLHG 502
            G +P  + YN +I G CKL   +EA +I   M + G+ P+  T+  ++D L G
Sbjct: 276 RGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCG 329



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 75/160 (46%)

Query: 338 LYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLC 397
            Y+ M +       V+ + +L    ++R+   A  V   ML  G   +   + I++ GLC
Sbjct: 94  FYRKMLETDTFINFVSLSGLLECYVQMRKTGFAFGVLALMLKRGFAFNVYNHNILLKGLC 153

Query: 398 ESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIV 457
            + +  +A     ++   S + D + Y  +I+G C   ++ +A+    E+  SG + ++V
Sbjct: 154 RNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEKALELANEMKGSGCSWSLV 213

Query: 458 CYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            + ++ID  CK     EA   L+EM+  GL  D V +  L
Sbjct: 214 TWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSL 253


>gi|222629097|gb|EEE61229.1| hypothetical protein OsJ_15269 [Oryza sativa Japonica Group]
          Length = 855

 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 134/493 (27%), Positives = 240/493 (48%), Gaps = 27/493 (5%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC  ++V +A  LF +MK  G  P+V +YT LI  +C+ G ++ A  +F+EMR  G  P 
Sbjct: 298 LCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPT 357

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY+ L+   L+ + V +AN     ++ RM  +     N+  +  LVD LC+ G +++ 
Sbjct: 358 VVTYTALIHAYLKAKQVPQAN----DIFHRMV-DAGCRPNDVTYGALVDGLCKAGNISKA 412

Query: 124 FRI-AEDMPQGKSVNEE--FAC-------------GHMIDSLCRSGRNHGASRVVYVMRK 167
           F + A+ +    S + +  F C             G ++D LC++ +   A  ++  M  
Sbjct: 413 FEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLS 472

Query: 168 RGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEK 227
            G  P+ + Y++++ G CK G    A ++  +  + GYLPS HTY  L++ +  +  L+ 
Sbjct: 473 SGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDL 532

Query: 228 ARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVIN 287
           A KVL  ML              +  LC I    + L +L  M +  C P+V+T   +I+
Sbjct: 533 AMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALID 592

Query: 288 GFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGY 347
           G  K G+I+ +L +   M + K C+P+ VT+  +I  L   G + +A  LL   M Q  +
Sbjct: 593 GLGKAGKIDLSLDLFTQM-SRKGCSPNYVTYRVLINHLCAAGLLDKA-RLLLGEMKQTYW 650

Query: 348 SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKR 407
              +  Y   ++G    +    +  +   M   G V  +  Y ++ID   ++ +L+ A  
Sbjct: 651 PKYLQGYRCAIQGFS--KSFIASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAME 708

Query: 408 FWDDIVW-PSNIH-DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDG 465
              +++  PS++  DN +YA++I+ LC + ++ EA     E+   G  P +  +  +I G
Sbjct: 709 LHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMTRRGFVPELSVFVCLIKG 768

Query: 466 ACKLSMKREAYQI 478
             ++    EA Q+
Sbjct: 769 LVEVKKWDEALQL 781



 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 123/511 (24%), Positives = 225/511 (44%), Gaps = 64/511 (12%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           ++G   ++   M + G  PN   + +L+H YC   +   AYK+ + M  CG  P  + Y+
Sbjct: 157 QLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYN 216

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEE---EDLSVNNAAFANLVDSLCREGYVNEVFR 125
           + +  +     +   ++L   L E++  E    +  +N    AN    LC  G  ++ F+
Sbjct: 217 IFIGSICGQEKLPSPDLL--DLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQ 274

Query: 126 IAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLC 185
           + ++M                                  MRK G  P   +Y+ ++  LC
Sbjct: 275 LIKEM----------------------------------MRK-GFVPDTSTYSKVITFLC 299

Query: 186 KHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM----LSKKDV 241
                 +A+ L +E    G  P  +TY +L++  C    +E+A+ + + M     S   V
Sbjct: 300 HATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVV 359

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
             T + + YL+A    K   +  ++   M+   C+P+ +T   +++G CK G I +A +V
Sbjct: 360 TYTALIHAYLKA----KQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEV 415

Query: 302 LNDMVAGK---------------FCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
              ++                    AP+ VT+  ++ GL    ++  A  LL   M   G
Sbjct: 416 YAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELL-DAMLSSG 474

Query: 347 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
             P  + Y+A++ G  +  +++ A+EVF  M   G +    TY  +ID + +  +LD A 
Sbjct: 475 CEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAM 534

Query: 407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466
           +    ++  S   +   Y AMI GLCR G+  +A+  L  + + G +PN+V Y  +IDG 
Sbjct: 535 KVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGL 594

Query: 467 CKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            K      +  +  +M + G +P+ VT+R+L
Sbjct: 595 GKAGKIDLSLDLFTQMSRKGCSPNYVTYRVL 625



 Score =  137 bits (346), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 112/502 (22%), Positives = 206/502 (41%), Gaps = 96/502 (19%)

Query: 103 NNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVV 162
           +   +  LV  L   G V+  FR+ ++M +     + F  G    +LC+ GR   A  ++
Sbjct: 39  SKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGRWADALDMI 98

Query: 163 --------------------------------YVMRKRGLTPSLVSYNSIVHGLCKH--- 187
                                           + MR     P++V+Y +++ G  K    
Sbjct: 99  EREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQL 158

Query: 188 GGCMR--------------------------------AYQLLEEGIQFGYLPSEHTYKVL 215
           G C R                                AY+LL      G  P    Y + 
Sbjct: 159 GWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIF 218

Query: 216 VEGLCGESDLEK------ARKVLQFMLSKKDV-DRTRICNIYLRALCLIKNPTELLNVLV 268
           +  +CG+  L        A K+   ML+   V ++  + N + R LC +    +   ++ 
Sbjct: 219 IGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVAN-FARCLCGVGKFDKAFQLIK 277

Query: 269 FMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM-VAGKFCAPDAVTFTTIIFGLLN 327
            M++    PD  T + VI   C   ++E+A  +  +M + G    PD  T+T +I     
Sbjct: 278 EMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVG--VTPDVYTYTILIDSFCK 335

Query: 328 VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADST 387
            G I++A   L++ M   G SP +VTY A++    + ++V +A ++F+ M+  G   +  
Sbjct: 336 AGLIEQA-QWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDV 394

Query: 388 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN----------------YVYAAMIKGL 431
           TY  ++DGLC++  + +A   +  ++  S+  D+                  Y A++ GL
Sbjct: 395 TYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGL 454

Query: 432 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 491
           C++ K+  A   L  ++ SG  PN + Y+ +IDG CK      A ++  +M K G  P  
Sbjct: 455 CKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSV 514

Query: 492 VTW-RILDKLHGNRGNDFGLRI 512
            T+  ++D++  +   D  +++
Sbjct: 515 HTYTSLIDRMFKDGRLDLAMKV 536



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 98/383 (25%), Positives = 176/383 (45%), Gaps = 62/383 (16%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   +V  AH+L   M S G  PN + Y  LI G+C+ G++D A +VF +M  CG 
Sbjct: 451 VDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGY 510

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           LP+  TY+ L+  + +     R ++ M  L + +K+    + N   +  ++D LC     
Sbjct: 511 LPSVHTYTSLIDRMFKDG---RLDLAMKVLSQMLKDS--CTPNVVTYTAMIDGLC----- 560

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                                         R G +  A +++ +M ++G +P++V+Y ++
Sbjct: 561 ------------------------------RIGESEKALKLLSLMEEKGCSPNVVTYTAL 590

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GL K G    +  L  +  + G  P+  TY+VL+  LC    L+KAR +L  M     
Sbjct: 591 IDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEM----- 645

Query: 241 VDRTRICNIYLRAL-CLI----KNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 295
             +      YL+   C I    K+    L +L  M      P       +I+ F K GR+
Sbjct: 646 --KQTYWPKYLQGYRCAIQGFSKSFIASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRL 703

Query: 296 EEALKVLNDMVAGKFCAPDAVT-----FTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG 350
           E A+++  +M+      P +V      + ++I  L    +++EA   LY  M +RG+ P 
Sbjct: 704 EIAMELHKEMME----VPSSVKTDNDMYASLIQALCLASQVEEAFR-LYSEMTRRGFVPE 758

Query: 351 IVTYNAVLRGLFRLRRVEEAKEV 373
           +  +  +++GL  +++ +EA ++
Sbjct: 759 LSVFVCLIKGLVEVKKWDEALQL 781



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 85/349 (24%), Positives = 152/349 (43%), Gaps = 11/349 (3%)

Query: 155 NHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKV 214
           +H A      ++  G  PS V+YN++V  L   G     +++ +E  + G+     T   
Sbjct: 21  SHAAGDSEDPLKDFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGC 80

Query: 215 LVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQ 274
               LC E     A  +++    K D   T +C   +  L       E ++ L  M    
Sbjct: 81  FAHALCKEGRWADALDMIEREDFKLD---TVLCTHMISGLMEASYFDEAMSFLHRMRCNS 137

Query: 275 CQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEA 334
           C P+V+T  T+++GF K  ++    +++N M+  + C P+   F +++    N      A
Sbjct: 138 CIPNVVTYRTLLSGFLKKKQLGWCKRIIN-MMMTEGCNPNPSLFNSLVHSYCNEKDYAYA 196

Query: 335 LNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEE------AKEVFNCMLGIGVVADSTT 388
             LL + M   G  PG V YN  +  +    ++        A++++  ML    V +   
Sbjct: 197 YKLLNR-MTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVN 255

Query: 389 YAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELV 448
            A     LC   + D+A +   +++    + D   Y+ +I  LC + K+ +A     E+ 
Sbjct: 256 VANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMK 315

Query: 449 DSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
             GVTP++  Y ++ID  CK  +  +A  +  EMR  G +P  VT+  L
Sbjct: 316 MVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTAL 364


>gi|449481246|ref|XP_004156125.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g02150-like [Cucumis
           sativus]
          Length = 822

 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 132/506 (26%), Positives = 239/506 (47%), Gaps = 42/506 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    +  + +LF  M+  G  P+VV+Y +LI GY + G ++    +F+EM+  G 
Sbjct: 237 IDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGC 296

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P+ +TY+ L+    +   + RA    F+ +  MK    L  N   ++ L+D+ C+EG +
Sbjct: 297 VPDIITYNGLINCYCKFEKMPRA----FEYFSEMKNN-GLKPNVVTYSTLIDAFCKEGMM 351

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
               ++  DM +   +  EF    +ID+ C++G    A +++  M + G+  ++V+Y ++
Sbjct: 352 QGAIKLLXDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTAL 411

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GLCK G  + A ++    ++ G  P++  Y  LV G      +E A K+L+ M     
Sbjct: 412 LDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTE--- 468

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                 CNI                          +PD+I   ++I G C   ++EE   
Sbjct: 469 ------CNI--------------------------KPDLILYGSIIWGHCSQRKLEETKL 496

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +L +M +    A   ++ TTII      G+  +ALN  +Q M   G    IVTY  ++ G
Sbjct: 497 ILEEMKSRGISANPVIS-TTIIDAYFKAGKSSDALNF-FQEMQDVGVEATIVTYCVLIDG 554

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L     VE A + F  ML +G+  +   Y  +IDGLC +N ++ AK+ +D++       D
Sbjct: 555 LCEAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCXNNCIESAKKLFDEMQCRGMTPD 614

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              + A+I G  + G + EA+  +  + +  +  ++  Y  ++ G  +     +A +   
Sbjct: 615 ITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFN 674

Query: 481 EMRKNGLNPDAVTWRILDKLHGNRGN 506
           EM + G+ P+ V    L + +  RG 
Sbjct: 675 EMIEKGILPEEVLCICLLREYYKRGQ 700



 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 125/484 (25%), Positives = 227/484 (46%), Gaps = 7/484 (1%)

Query: 7   LSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLT 66
           L  + EA++ F  M++   +P   S   L+H   ++G   +  K F++M   G+ P+  T
Sbjct: 173 LGLLEEANECFSRMRNFRTLPKARSCNFLLHRLSKSGNGQLVRKFFNDMIGAGIAPSVFT 232

Query: 67  YSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRI 126
           Y+V++  + +  D+E +  L  ++      E  LS +   + +L+D   + G + EV  +
Sbjct: 233 YNVMIDYLCKEGDLENSRRLFVQM-----REMGLSPDVVTYNSLIDGYGKVGSLEEVASL 287

Query: 127 AEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK 186
             +M     V +      +I+  C+  +   A      M+  GL P++V+Y++++   CK
Sbjct: 288 FNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCK 347

Query: 187 HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRI 246
            G    A +LL +  + G LP+E TY  L++  C   +L +A K+L  ML          
Sbjct: 348 EGMMQGAIKLLXDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVT 407

Query: 247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV 306
               L  LC      E   V   ML+    P+      +++G+ K  R+E+A+K+L  M 
Sbjct: 408 YTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMT 467

Query: 307 AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 366
                 PD + + +II+G  +  +++E   L+ + M  RG S   V    ++   F+  +
Sbjct: 468 ECNI-KPDLILYGSIIWGHCSQRKLEET-KLILEEMKSRGISANPVISTTIIDAYFKAGK 525

Query: 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAA 426
             +A   F  M  +GV A   TY ++IDGLCE+  ++ A  ++  ++      +  VY +
Sbjct: 526 SSDALNFFQEMQDVGVEATIVTYCVLIDGLCEAGIVELAVDYFCRMLSLGLQPNVAVYTS 585

Query: 427 MIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG 486
           +I GLC +  I  A     E+   G+TP+I  +  +IDG  K    +EA  ++  M +  
Sbjct: 586 LIDGLCXNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELA 645

Query: 487 LNPD 490
           +  D
Sbjct: 646 IEFD 649



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 109/432 (25%), Positives = 189/432 (43%), Gaps = 40/432 (9%)

Query: 110 LVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRG 169
           L+  L + G    V +   DM         F    MID LC+ G    + R+   MR+ G
Sbjct: 201 LLHRLSKSGNGQLVRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMG 260

Query: 170 LTPSLVSYNSIVHGLCKHG---------------GCM--------------------RAY 194
           L+P +V+YNS++ G  K G               GC+                    RA+
Sbjct: 261 LSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAF 320

Query: 195 QLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRAL 254
           +   E    G  P+  TY  L++  C E  ++ A K+L  M     +         + A 
Sbjct: 321 EYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLIDAN 380

Query: 255 CLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPD 314
           C   N TE   +L  MLQ   + +++T   +++G CK GR+ EA +V   M+     +P+
Sbjct: 381 CKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGI-SPN 439

Query: 315 AVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVF 374
              +T ++ G +   R+++A+ +L Q M +    P ++ Y +++ G    R++EE K + 
Sbjct: 440 QQVYTALVHGYIKAERMEDAMKILKQ-MTECNIKPDLILYGSIIWGHCSQRKLEETKLIL 498

Query: 375 NCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRS 434
             M   G+ A+      +ID   ++ +  +A  F+ ++           Y  +I GLC +
Sbjct: 499 EEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCEA 558

Query: 435 GKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
           G +  AV +   ++  G+ PN+  Y  +IDG C  +    A ++  EM+  G+ PD   +
Sbjct: 559 GIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCXNNCIESAKKLFDEMQCRGMTPDITAF 618

Query: 495 RIL---DKLHGN 503
             L   +  HGN
Sbjct: 619 TALIDGNLKHGN 630



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 90/332 (27%), Positives = 162/332 (48%), Gaps = 10/332 (3%)

Query: 165 MRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESD 224
           MR     P   S N ++H L K G      +   + I  G  PS  TY V+++ LC E D
Sbjct: 186 MRNFRTLPKARSCNFLLHRLSKSGNGQLVRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGD 245

Query: 225 LEKARKVLQFM----LSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVI 280
           LE +R++   M    LS   V    + + Y +    + +  E+ ++   M    C PD+I
Sbjct: 246 LENSRRLFVQMREMGLSPDVVTYNSLIDGYGK----VGSLEEVASLFNEMKDVGCVPDII 301

Query: 281 TLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQ 340
           T N +IN +CK  ++  A +  ++M       P+ VT++T+I      G +Q A+ LL  
Sbjct: 302 TYNGLINCYCKFEKMPRAFEYFSEMKNNGL-KPNVVTYSTLIDAFCKEGMMQGAIKLLXD 360

Query: 341 VMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN 400
            M + G  P   TY +++    +   + EA ++ N ML  GV  +  TY  ++DGLC++ 
Sbjct: 361 -MRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAG 419

Query: 401 QLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYN 460
           ++ EA+  +  ++      +  VY A++ G  ++ ++ +A+  L ++ +  + P+++ Y 
Sbjct: 420 RMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYG 479

Query: 461 VVIDGACKLSMKREAYQILREMRKNGLNPDAV 492
            +I G C      E   IL EM+  G++ + V
Sbjct: 480 SIIWGHCSQRKLEETKLILEEMKSRGISANPV 511



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 136/278 (48%), Gaps = 4/278 (1%)

Query: 225 LEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNT 284
           LE+A +    M + + + + R CN  L  L    N   +      M+     P V T N 
Sbjct: 176 LEEANECFSRMRNFRTLPKARSCNFLLHRLSKSGNGQLVRKFFNDMIGAGIAPSVFTYNV 235

Query: 285 VINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ 344
           +I+  CK G +E + ++   M      +PD VT+ ++I G   VG ++E  +L +  M  
Sbjct: 236 MIDYLCKEGDLENSRRLFVQMREMGL-SPDVVTYNSLIDGYGKVGSLEEVASL-FNEMKD 293

Query: 345 RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 404
            G  P I+TYN ++    +  ++  A E F+ M   G+  +  TY+ +ID  C+   +  
Sbjct: 294 VGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQG 353

Query: 405 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
           A +   D+     + + + Y ++I   C++G + EA   L +++ +GV  NIV Y  ++D
Sbjct: 354 AIKLLXDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLD 413

Query: 465 GACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
           G CK     EA ++ R M K+G++P+   +  L  +HG
Sbjct: 414 GLCKAGRMIEAEEVFRSMLKDGISPNQQVYTAL--VHG 449



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 110/225 (48%), Gaps = 2/225 (0%)

Query: 282 LNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQV 341
            + + + F ++G +EEA +  + M   +   P A +   ++  L   G  Q  +   +  
Sbjct: 163 FDVLFSVFVELGLLEEANECFSRMRNFR-TLPKARSCNFLLHRLSKSGNGQ-LVRKFFND 220

Query: 342 MPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ 401
           M   G +P + TYN ++  L +   +E ++ +F  M  +G+  D  TY  +IDG  +   
Sbjct: 221 MIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGS 280

Query: 402 LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNV 461
           L+E    ++++     + D   Y  +I   C+  K+  A  +  E+ ++G+ PN+V Y+ 
Sbjct: 281 LEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYST 340

Query: 462 VIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           +ID  CK  M + A ++L +MR+ GL P+  T+  L   +   GN
Sbjct: 341 LIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLIDANCKAGN 385



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 68/145 (46%)

Query: 350 GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFW 409
           G   ++ +      L  +EEA E F+ M     +  + +   ++  L +S      ++F+
Sbjct: 159 GSGVFDVLFSVFVELGLLEEANECFSRMRNFRTLPKARSCNFLLHRLSKSGNGQLVRKFF 218

Query: 410 DDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKL 469
           +D++        + Y  MI  LC+ G +  +     ++ + G++P++V YN +IDG  K+
Sbjct: 219 NDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKV 278

Query: 470 SMKREAYQILREMRKNGLNPDAVTW 494
               E   +  EM+  G  PD +T+
Sbjct: 279 GSLEEVASLFNEMKDVGCVPDIITY 303


>gi|297745184|emb|CBI39176.3| unnamed protein product [Vitis vinifera]
          Length = 996

 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 135/525 (25%), Positives = 246/525 (46%), Gaps = 68/525 (12%)

Query: 4   LCGLSR---VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           LCG  R   +G   ++   M + G  P+   + +LIH YCR+G+   AYK+  +M  CG 
Sbjct: 341 LCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGC 400

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMF--KLWERM-----------------------K 95
            P  + Y++L+ G+     +   +VL    K +  M                       K
Sbjct: 401 QPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGK 460

Query: 96  EEEDLSV-----------NNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGH 144
            E+  S+           + + ++ ++  LC    V+  F + E+M     V + F    
Sbjct: 461 FEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTI 520

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
           +IDS C+ G    A +    M + G  P++V+Y +++H   K      A +L E  +  G
Sbjct: 521 LIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEG 580

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL 264
            +P+  TY  L++G C    +EKA                  C IY R    ++   ++ 
Sbjct: 581 CIPNVVTYTALIDGHCKSGQIEKA------------------CQIYAR----MRGNADIP 618

Query: 265 NVLVFMLQTQCQ---PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTI 321
           +V ++          P++ T   +++G CK  +++EA  +L D+++ + C P+ + +  +
Sbjct: 619 DVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLL-DVMSVEGCEPNHIVYDAL 677

Query: 322 IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG 381
           I G   VG++ EA  +++  M +RGY P + TY++++  LF+ +R++ A +V + ML   
Sbjct: 678 IDGFCKVGKLDEA-QMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENS 736

Query: 382 VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV-YAAMIKGLCRSGKIHEA 440
              +   Y  +IDGLC+  + DEA R    ++     H N V Y AMI G  ++GK+ + 
Sbjct: 737 CAPNVIIYTEMIDGLCKVGKTDEAYRLM-SMMEEKGCHPNVVTYTAMIDGFGKAGKVDKC 795

Query: 441 VHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN 485
           +  + ++   G  PN V Y V+I+  C   +  +A+Q+L EM++ 
Sbjct: 796 LELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQT 840



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 132/498 (26%), Positives = 236/498 (47%), Gaps = 37/498 (7%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC  S+V  A  LF +MKS   VP+V +YT LI  +C+ G +  A K FDEM   G  PN
Sbjct: 490 LCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPN 549

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY+ L+   L+ R +  AN    +L+E M  E  +  N   +  L+D  C+ G + + 
Sbjct: 550 VVTYTALIHAYLKARKMSSAN----ELFEMMLSEGCIP-NVVTYTALIDGHCKSGQIEKA 604

Query: 124 FRIAEDMPQGKSVNEE----------------FACGHMIDSLCRSGRNHGASRVVYVMRK 167
            +I   M     + +                 F  G ++D LC++ +   A  ++ VM  
Sbjct: 605 CQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSV 664

Query: 168 RGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEK 227
            G  P+ + Y++++ G CK G    A  +  +  + GY P+ +TY  L++ L  +  L+ 
Sbjct: 665 EGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDL 724

Query: 228 ARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVIN 287
           A KVL  ML         I    +  LC +    E   ++  M +  C P+V+T   +I+
Sbjct: 725 ALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMID 784

Query: 288 GFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGY 347
           GF K G++++ L+++  M A K CAP+ VT+  +I      G + +A  LL + M Q  +
Sbjct: 785 GFGKAGKVDKCLELMRQMGA-KGCAPNFVTYRVLINHCCAAGLLDDAHQLLDE-MKQTYW 842

Query: 348 SPGIVTYNAVLRGLFR-----LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQL 402
              +  Y  V+ G  R     L  ++E  E     + + ++     Y I+ID  C++ +L
Sbjct: 843 PKHMAGYRKVIEGFNREFIISLGLLDEIAE----NVAVPIIP---AYRILIDSFCKAGRL 895

Query: 403 DEAKRFWDDIVWPSNIH--DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYN 460
           + A     ++   ++    D  +Y+++I+ L  + K+ +A     +++  G  P +  + 
Sbjct: 896 ELALELHKEMSSCTSYSAADKDLYSSLIESLSLASKVDKAFELYADMIKRGGIPELSIFF 955

Query: 461 VVIDGACKLSMKREAYQI 478
            ++ G  +++   EA Q+
Sbjct: 956 YLVKGLIRINRWEEALQL 973



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 128/529 (24%), Positives = 230/529 (43%), Gaps = 54/529 (10%)

Query: 35  LIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKL---- 90
           LI   CR G  +VA +    ++  G  P+ LTY+ LVR  L    ++ A ++  ++    
Sbjct: 203 LIRKCCRNGLWNVALEELGRLKDLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMSDSG 262

Query: 91  --------------------WER---MKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIA 127
                               W     + E+E+  ++   +  ++  LC      E     
Sbjct: 263 FNMDGYTLGCFVHLLCKAGRWREALALIEKEEFKLDTVIYTQMISGLCEASLFEEAMDFL 322

Query: 128 EDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKH 187
             M     +        ++    R  +     R++ +M   G  PS   +NS++H  C+ 
Sbjct: 323 SRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRS 382

Query: 188 GGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESD------LEKARKVLQFMLSKKDV 241
           G    AY+LL++    G  P    Y +L+ G+CG         LE A K    ML    V
Sbjct: 383 GDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVV 442

Query: 242 -DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
            ++  + N+  R LC      +  +++  M+     PD  T + VI   C   +++ A  
Sbjct: 443 LNKVNVSNL-ARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFL 501

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +  +M +     PD  T+T +I     VG +Q+A    +  M + G +P +VTY A++  
Sbjct: 502 LFEEMKSNHV-VPDVFTYTILIDSFCKVGLLQQARK-WFDEMVRDGCAPNVVTYTALIHA 559

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
             + R++  A E+F  ML  G + +  TY  +IDG C+S Q+++A + +  +   ++I D
Sbjct: 560 YLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPD 619

Query: 421 N----------------YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
                            + Y A++ GLC++ K+ EA   L  +   G  PN + Y+ +ID
Sbjct: 620 VDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALID 679

Query: 465 GACKLSMKREAYQILREMRKNGLNPDAVTW-RILDKLHGNRGNDFGLRI 512
           G CK+    EA  +  +M + G  P+  T+  ++D+L  ++  D  L++
Sbjct: 680 GFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKV 728



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 127/500 (25%), Positives = 234/500 (46%), Gaps = 31/500 (6%)

Query: 2   DQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVL 61
           ++L  L  +  A K + +M     V N V+ + L    C  G+ + AY +  EM   G +
Sbjct: 418 EKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFI 477

Query: 62  PNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVN 121
           P++ TYS ++  +     V+ A    F L+E MK    +  +   +  L+DS C+ G + 
Sbjct: 478 PDTSTYSKVIGLLCNASKVDNA----FLLFEEMKSNH-VVPDVFTYTILIDSFCKVGLLQ 532

Query: 122 EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
           +  +  ++M +            +I +  ++ +   A+ +  +M   G  P++V+Y +++
Sbjct: 533 QARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALI 592

Query: 182 HGLCKHGGCMRAYQLLEE--------------GIQFGYL--PSEHTYKVLVEGLCGESDL 225
            G CK G   +A Q+                  I  G +  P+  TY  LV+GLC    +
Sbjct: 593 DGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKV 652

Query: 226 EKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTV 285
           ++AR +L  M  +       + +  +   C +    E   V   M +    P+V T +++
Sbjct: 653 KEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSL 712

Query: 286 INGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQR 345
           I+   K  R++ ALKVL+ M+    CAP+ + +T +I GL  VG+  EA  L+  +M ++
Sbjct: 713 IDRLFKDKRLDLALKVLSRMLENS-CAPNVIIYTEMIDGLCKVGKTDEAYRLM-SMMEEK 770

Query: 346 GYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA 405
           G  P +VTY A++ G  +  +V++  E+   M   G   +  TY ++I+  C +  LD+A
Sbjct: 771 GCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDA 830

Query: 406 KRFWDDI---VWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVV 462
            +  D++    WP ++     Y  +I+G  R   I  ++  L E+ ++   P I  Y ++
Sbjct: 831 HQLLDEMKQTYWPKHMAG---YRKVIEGFNREFII--SLGLLDEIAENVAVPIIPAYRIL 885

Query: 463 IDGACKLSMKREAYQILREM 482
           ID  CK      A ++ +EM
Sbjct: 886 IDSFCKAGRLELALELHKEM 905


>gi|255764587|gb|ACU33853.1| PPR1 protein [Capsicum annuum]
          Length = 577

 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 133/513 (25%), Positives = 246/513 (47%), Gaps = 22/513 (4%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSY----------------TTLIHGYCRTGE 44
           M ++  L  V +  KLF  M +  H   VVS                   + + YC    
Sbjct: 53  MVRMKPLPSVIDFSKLFKTMINMKHYSAVVSLFREMRILGIPISDSILNIVTNSYCLRHR 112

Query: 45  MDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNN 104
           +D A+ V       G+  N +T++ L+ G+     V  A VL    ++++  E+    N 
Sbjct: 113 IDCAFSVLPIYLKTGIPFNVVTFNTLLGGLFAENKVTDAVVL----FKKLVREKICEPNE 168

Query: 105 AAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYV 164
             +  +++ L + G+  +   +   M QG +  +      +ID+LC+      A  ++  
Sbjct: 169 VMYGTVMNGLSKRGHTEKTLSLLRIMEQGNTKPDVRTYSIVIDALCKDINLDAAINLLNE 228

Query: 165 MRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESD 224
           M+++ + P++ +YNS++ GLCK G   +   LL E +     P+ HT+ +L++GLC E  
Sbjct: 229 MKQKNIPPNIFTYNSLIDGLCKLGQWEKVKTLLSEMVNLNINPNVHTFSILIDGLCKEGK 288

Query: 225 LEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNT 284
           +E A +V++ M+ K         +  +   CL         V   +     +P++ + + 
Sbjct: 289 VEDADEVMRHMIEKGVEPDIITYSAIMDGYCLRGQVDRARRVFNVLRDKGIKPNIFSYSI 348

Query: 285 VINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ 344
           +ING+CK   + +A+++  + ++ K   PD VT++TI+ GL+ VGRI +A   ++  M +
Sbjct: 349 LINGYCKKKNLAKAMQLFGE-ISQKGLKPDTVTYSTILHGLIEVGRIGDA-KKIFDEMLR 406

Query: 345 RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 404
            G +P I  ++ +L G F+   VEEA  +F+ +       + + Y +VI+GLC+++++ E
Sbjct: 407 VGPTPDICLHSTLLFGYFKYGLVEEAMLLFSKLERNREDTNISFYTVVINGLCKNDRVRE 466

Query: 405 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
           A   ++ +     I D   Y  MI G CR G   E    L ++ D+G   N + YNV++ 
Sbjct: 467 AHAIFEKLPSIGLIPDVRTYNVMITGFCREGLFDEVKGILRKMEDNGCPANNITYNVIMQ 526

Query: 465 GACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           G  + +   E    ++EM   G + DA T  +L
Sbjct: 527 GFFRSNKISEIVSFMKEMAGRGFSFDATTTGVL 559



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 101/400 (25%), Positives = 178/400 (44%), Gaps = 10/400 (2%)

Query: 6   GLSRVGEAHK---LFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           GLS+ G   K   L   M+     P+V +Y+ +I   C+   +D A  + +EM+   + P
Sbjct: 177 GLSKRGHTEKTLSLLRIMEQGNTKPDVRTYSIVIDALCKDINLDAAINLLNEMKQKNIPP 236

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           N  TY+ L+ G+ +    E+   L+ ++        +++ N   F+ L+D LC+EG V +
Sbjct: 237 NIFTYNSLIDGLCKLGQWEKVKTLLSEMVNL-----NINPNVHTFSILIDGLCKEGKVED 291

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
              +   M +     +      ++D  C  G+   A RV  V+R +G+ P++ SY+ +++
Sbjct: 292 ADEVMRHMIEKGVEPDIITYSAIMDGYCLRGQVDRARRVFNVLRDKGIKPNIFSYSILIN 351

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           G CK     +A QL  E  Q G  P   TY  ++ GL     +  A+K+   ML      
Sbjct: 352 GYCKKKNLAKAMQLFGEISQKGLKPDTVTYSTILHGLIEVGRIGDAKKIFDEMLRVGPTP 411

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
              + +  L          E + +   + + +   ++     VING CK  R+ EA  + 
Sbjct: 412 DICLHSTLLFGYFKYGLVEEAMLLFSKLERNREDTNISFYTVVINGLCKNDRVREAHAIF 471

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
             + +     PD  T+  +I G    G   E   +L + M   G     +TYN +++G F
Sbjct: 472 EKLPSIGLI-PDVRTYNVMITGFCREGLFDEVKGILRK-MEDNGCPANNITYNVIMQGFF 529

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQL 402
           R  ++ E       M G G   D+TT  ++I+ L E+  +
Sbjct: 530 RSNKISEIVSFMKEMAGRGFSFDATTTGVLINVLKENPSI 569



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 73/228 (32%), Positives = 124/228 (54%), Gaps = 4/228 (1%)

Query: 275 CQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEA 334
           C+P+ +   TV+NG  K G  E+ L +L  M  G    PD  T++ +I  L     +  A
Sbjct: 164 CEPNEVMYGTVMNGLSKRGHTEKTLSLLRIMEQGN-TKPDVRTYSIVIDALCKDINLDAA 222

Query: 335 LNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVID 394
           +NLL + M Q+   P I TYN+++ GL +L + E+ K + + M+ + +  +  T++I+ID
Sbjct: 223 INLLNE-MKQKNIPPNIFTYNSLIDGLCKLGQWEKVKTLLSEMVNLNINPNVHTFSILID 281

Query: 395 GLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTP 454
           GLC+  ++++A      ++      D   Y+A++ G C  G++  A      L D G+ P
Sbjct: 282 GLCKEGKVEDADEVMRHMIEKGVEPDIITYSAIMDGYCLRGQVDRARRVFNVLRDKGIKP 341

Query: 455 NIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
           NI  Y+++I+G CK     +A Q+  E+ + GL PD VT+  +  LHG
Sbjct: 342 NIFSYSILINGYCKKKNLAKAMQLFGEISQKGLKPDTVTYSTI--LHG 387



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 66/322 (20%), Positives = 143/322 (44%), Gaps = 41/322 (12%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   +V +A ++   M  +G  P++++Y+ ++ GYC  G++D A +VF+ +R  G+
Sbjct: 280 IDGLCKEGKVEDADEVMRHMIEKGVEPDIITYSAIMDGYCLRGQVDRARRVFNVLRDKGI 339

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN  +YS+L+ G  + +++ +A  L  ++ ++      L  +   ++ ++  L   G +
Sbjct: 340 KPNIFSYSILINGYCKKKNLAKAMQLFGEISQK-----GLKPDTVTYSTILHGLIEVGRI 394

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +  +I ++M +     +      ++    + G    A  +   + +     ++  Y  +
Sbjct: 395 GDAKKIFDEMLRVGPTPDICLHSTLLFGYFKYGLVEEAMLLFSKLERNREDTNISFYTVV 454

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++GLCK+     A+ + E+    G +P   TY V++ G C E   ++ + +L+       
Sbjct: 455 INGLCKNDRVREAHAIFEKLPSIGLIPDVRTYNVMITGFCREGLFDEVKGILR------- 507

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                        M    C  + IT N ++ GF +  +I E + 
Sbjct: 508 ----------------------------KMEDNGCPANNITYNVIMQGFFRSNKISEIVS 539

Query: 301 VLNDMVAGKFCAPDAVTFTTII 322
            + +M AG+  + DA T   +I
Sbjct: 540 FMKEM-AGRGFSFDATTTGVLI 560


>gi|147833287|emb|CAN77475.1| hypothetical protein VITISV_041111 [Vitis vinifera]
          Length = 1010

 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 135/525 (25%), Positives = 246/525 (46%), Gaps = 68/525 (12%)

Query: 4   LCGLSR---VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           LCG  R   +G   ++   M + G  P+   + +LIH YCR+G+   AYK+  +M  CG 
Sbjct: 341 LCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGC 400

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMF--KLWERM-----------------------K 95
            P  + Y++L+ G+     +   +VL    K +  M                       K
Sbjct: 401 QPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGK 460

Query: 96  EEEDLSV-----------NNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGH 144
            E+  S+           + + ++ ++  LC    V+  F + E+M     V + F    
Sbjct: 461 FEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTI 520

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
           +IDS C+ G    A +    M + G  P++V+Y +++H   K      A +L E  +  G
Sbjct: 521 LIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEG 580

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL 264
            +P+  TY  L++G C    +EKA                  C IY R    ++   ++ 
Sbjct: 581 CIPNVVTYTALIDGHCKSGQIEKA------------------CQIYAR----MRGNADIP 618

Query: 265 NVLVFMLQTQCQ---PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTI 321
           +V ++          P++ T   +++G CK  +++EA  +L D+++ + C P+ + +  +
Sbjct: 619 DVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLL-DVMSVEGCEPNHIVYDAL 677

Query: 322 IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG 381
           I G   VG++ EA  +++  M +RGY P + TY++++  LF+ +R++ A +V + ML   
Sbjct: 678 IDGFCKVGKLDEA-QMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENS 736

Query: 382 VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV-YAAMIKGLCRSGKIHEA 440
              +   Y  +IDGLC+  + DEA R    ++     H N V Y AMI G  ++GK+ + 
Sbjct: 737 CAPNVIIYTEMIDGLCKVGKTDEAYRLM-SMMEEKGCHPNVVTYTAMIDGFGKAGKVDKC 795

Query: 441 VHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN 485
           +  + ++   G  PN V Y V+I+  C   +  +A+Q+L EM++ 
Sbjct: 796 LELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQT 840



 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 129/490 (26%), Positives = 231/490 (47%), Gaps = 37/490 (7%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC  S+V  A  LF +MKS   VP+V +YT LI  +C+ G +  A K FDEM   G  PN
Sbjct: 490 LCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPN 549

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY+ L+   L+ R +  AN    +L+E M  E  +  N   +  L+D  C+ G + + 
Sbjct: 550 VVTYTALIHAYLKARKMSSAN----ELFEMMLSEGCIP-NVVTYTALIDGHCKSGQIEKA 604

Query: 124 FRIAEDMPQGKSVNEE----------------FACGHMIDSLCRSGRNHGASRVVYVMRK 167
            +I   M     + +                 F  G ++D LC++ +   A  ++ VM  
Sbjct: 605 CQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSV 664

Query: 168 RGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEK 227
            G  P+ + Y++++ G CK G    A  +  +  + GY P+ +TY  L++ L  +  L+ 
Sbjct: 665 EGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDL 724

Query: 228 ARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVIN 287
           A KVL  ML         I    +  LC +    E   ++  M +  C P+V+T   +I+
Sbjct: 725 ALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMID 784

Query: 288 GFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGY 347
           GF K G++++ L+++  M A K CAP+ VT+  +I      G + +A  LL + M Q  +
Sbjct: 785 GFGKAGKVDKCLELMRQMGA-KGCAPNFVTYRVLINHCCAAGLLDDAHQLLDE-MKQTYW 842

Query: 348 SPGIVTYNAVLRGLFR-----LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQL 402
              +  Y  V+ G  R     L  ++E  E     + + ++     Y I+ID  C++ +L
Sbjct: 843 PKHMAGYRKVIEGFNREFIISLGLLDEIAE----NVAVPIIP---AYRILIDSFCKAGRL 895

Query: 403 DEAKRFWDDIVWPSNIH--DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYN 460
           + A      +   ++    D  +Y+++I+ L  + K+ +A     +++  G  P +  + 
Sbjct: 896 ELALELHKXMSSCTSYSAADKDLYSSLIESLSLASKVDKAFELYADMIKRGGIPELSIFF 955

Query: 461 VVIDGACKLS 470
            ++ G  +++
Sbjct: 956 YLVKGLIRIN 965



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 128/529 (24%), Positives = 230/529 (43%), Gaps = 54/529 (10%)

Query: 35  LIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKL---- 90
           LI   CR G  +VA +    ++  G  P+ LTY+ LVR  L    ++ A ++  ++    
Sbjct: 203 LIRKCCRNGLWNVALEELGRLKDLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMSDSG 262

Query: 91  --------------------WER---MKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIA 127
                               W     + E+E+  ++   +  ++  LC      E     
Sbjct: 263 FNMDGYTLGCFVHLLCKAGRWREALALIEKEEFKLDTVIYTQMISGLCEASLFEEAMDFL 322

Query: 128 EDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKH 187
             M     +        ++    R  +     R++ +M   G  PS   +NS++H  C+ 
Sbjct: 323 SRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRS 382

Query: 188 GGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESD------LEKARKVLQFMLSKKDV 241
           G    AY+LL++    G  P    Y +L+ G+CG         LE A K    ML    V
Sbjct: 383 GDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVV 442

Query: 242 -DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
            ++  + N+  R LC      +  +++  M+     PD  T + VI   C   +++ A  
Sbjct: 443 LNKVNVSNL-ARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFL 501

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +  +M +     PD  T+T +I     VG +Q+A    +  M + G +P +VTY A++  
Sbjct: 502 LFEEMKSNHV-VPDVFTYTILIDSFCKVGLLQQARK-WFDEMVRDGCAPNVVTYTALIHA 559

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
             + R++  A E+F  ML  G + +  TY  +IDG C+S Q+++A + +  +   ++I D
Sbjct: 560 YLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPD 619

Query: 421 N----------------YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
                            + Y A++ GLC++ K+ EA   L  +   G  PN + Y+ +ID
Sbjct: 620 VDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALID 679

Query: 465 GACKLSMKREAYQILREMRKNGLNPDAVTW-RILDKLHGNRGNDFGLRI 512
           G CK+    EA  +  +M + G  P+  T+  ++D+L  ++  D  L++
Sbjct: 680 GFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKV 728



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 126/500 (25%), Positives = 233/500 (46%), Gaps = 31/500 (6%)

Query: 2   DQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVL 61
           ++L  L  +  A K + +M     V N V+ + L    C  G+ + AY +  EM   G +
Sbjct: 418 EKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFI 477

Query: 62  PNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVN 121
           P++ TYS ++  +     V+ A    F L+E MK    +  +   +  L+DS C+ G + 
Sbjct: 478 PDTSTYSKVIGLLCNASKVDNA----FLLFEEMKSNH-VVPDVFTYTILIDSFCKVGLLQ 532

Query: 122 EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
           +  +  ++M +            +I +  ++ +   A+ +  +M   G  P++V+Y +++
Sbjct: 533 QARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALI 592

Query: 182 HGLCKHGGCMRAYQLLEE--------------GIQFGYL--PSEHTYKVLVEGLCGESDL 225
            G CK G   +A Q+                  I  G +  P+  TY  LV+GLC    +
Sbjct: 593 DGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKV 652

Query: 226 EKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTV 285
           ++AR +L  M  +       + +  +   C +    E   V   M +    P+V T +++
Sbjct: 653 KEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSL 712

Query: 286 INGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQR 345
           I+   K  R++ ALKVL+ M+    CAP+ + +T +I GL  VG+  EA  L+  +M ++
Sbjct: 713 IDRLFKDKRLDLALKVLSRMLENS-CAPNVIIYTEMIDGLCKVGKTDEAYRLM-SMMEEK 770

Query: 346 GYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA 405
           G  P +VTY A++ G  +  +V++  E+   M   G   +  TY ++I+  C +  LD+A
Sbjct: 771 GCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDA 830

Query: 406 KRFWDDI---VWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVV 462
            +  D++    WP ++     Y  +I+G  R   I  ++  L E+ ++   P I  Y ++
Sbjct: 831 HQLLDEMKQTYWPKHMAG---YRKVIEGFNREFII--SLGLLDEIAENVAVPIIPAYRIL 885

Query: 463 IDGACKLSMKREAYQILREM 482
           ID  CK      A ++ + M
Sbjct: 886 IDSFCKAGRLELALELHKXM 905



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 101/415 (24%), Positives = 183/415 (44%), Gaps = 68/415 (16%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP------ 62
           ++  A++LF  M S G +PNVV+YT LI G+C++G+++ A +++  MR    +P      
Sbjct: 565 KMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYF 624

Query: 63  ----------NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVD 112
                     N  TY  LV G+ +   V+ A  L+      +   E    N+  +  L+D
Sbjct: 625 KIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLL-----DVMSVEGCEPNHIVYDALID 679

Query: 113 SLCREGYVNE---VFRIAEDMPQGKSVNE-------------------------EFACG- 143
             C+ G ++E   VF    +   G +V                           E +C  
Sbjct: 680 GFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAP 739

Query: 144 ------HMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLL 197
                  MID LC+ G+   A R++ +M ++G  P++V+Y +++ G  K G   +  +L+
Sbjct: 740 NVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELM 799

Query: 198 EEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVL----QFMLSKKDVDRTRICNIYLRA 253
            +    G  P+  TY+VL+   C    L+ A ++L    Q    K      ++   + R 
Sbjct: 800 RQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNRE 859

Query: 254 LCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA-GKFCA 312
             +       L +L  + +    P +     +I+ FCK GR+E AL++   M +   + A
Sbjct: 860 FIIS------LGLLDEIAENVAVPIIPAYRILIDSFCKAGRLELALELHKXMSSCTSYSA 913

Query: 313 PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRV 367
            D   ++++I  L    ++ +A  L Y  M +RG  P +  +  +++GL R+ R 
Sbjct: 914 ADKDLYSSLIESLSLASKVDKAFEL-YADMIKRGGIPELSIFFYLVKGLIRINRT 967


>gi|147803305|emb|CAN75473.1| hypothetical protein VITISV_002797 [Vitis vinifera]
          Length = 1356

 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 143/513 (27%), Positives = 245/513 (47%), Gaps = 30/513 (5%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   R  +A+ L   M+     PN V+Y TLI+G+ + G++ VA +VF+EM    +
Sbjct: 310 IDNLCTNHRSAKAYLLLKKMRKEMISPNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDL 369

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +TY+ L+ G     D E A     +L + M E   L +N   +  L++ LC+    
Sbjct: 370 SPNCVTYNALIGGHCHVGDFEEA----LRLLDHM-EAAGLRLNEVTYGTLLNGLCK---- 420

Query: 121 NEVFRIAEDMPQGKSVNEEFACGH-----MIDSLCRSGRNHGASRVVYVMRKRGLTPSLV 175
           +E F +A+ + +   VN +   GH     +ID LC++G    A ++V  M K G+ P ++
Sbjct: 421 HEKFELAKRLLERMRVN-DMVVGHIAYTVLIDGLCKNGMLDEAVQLVGNMYKDGVNPDVI 479

Query: 176 SYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM 235
           +Y+S+++G C+ G    A +++    + G + ++  Y  L+   C   ++ +A KV   M
Sbjct: 480 TYSSLINGFCRVGNIKSAKEIICRMYRSGLVLNKIIYSTLIYNFCQHGNVTEAMKVYAVM 539

Query: 236 LSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 295
                      CN+ + +LC      E    L  M +    P+ IT + +ING+  +G  
Sbjct: 540 NCNGHGADHFTCNVLVSSLCRDGKLGEAEKFLCHMSRIGLVPNSITYDCIINGYGSIGDP 599

Query: 296 EEALKVLNDMVAGKFCA--PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGI-- 351
             A    +DM+    C   P   T+ +++ GL   G + EA   L ++     Y PG   
Sbjct: 600 LNAFSFFDDMIK---CGQHPSFFTYGSLLKGLCKGGNLVEAKKFLNRLH----YIPGAVD 652

Query: 352 -VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD 410
            V YN +L    +   + EA  +F+ M+   V+ DS TY+ ++ GLC   +   A   + 
Sbjct: 653 SVMYNTLLAETCKSGNLHEAVALFDKMVQNNVLPDSYTYSSLLTGLCRKGKAVTAVCLFG 712

Query: 411 DIVWPSNIHDNYV-YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKL 469
             +    +  N+V Y  ++ GL ++G    A +F  E++  G  P+ V +N +ID   + 
Sbjct: 713 TAMGRGTLFPNHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRR 772

Query: 470 SMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
               +A      MR  G+ P+  T+ IL  LHG
Sbjct: 773 GQMMKANDFFSTMRWWGVCPNLATYNIL--LHG 803



 Score =  184 bits (467), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 144/544 (26%), Positives = 239/544 (43%), Gaps = 38/544 (6%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC    + +A  L   M+  G VP +V+Y TL++ YC+ G    A ++ D M   G+
Sbjct: 240 INGLCVEGNLKKAGNLLKQMEENGFVPTIVTYNTLLNWYCKKGRYKAAIELIDYMICKGI 299

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERM----------------KEEE------ 98
             +  TY+V +  +       +A +L+ K+ + M                KE +      
Sbjct: 300 EADVCTYNVFIDNLCTNHRSAKAYLLLKKMRKEMISPNEVTYNTLINGFVKEGKIGVAAQ 359

Query: 99  --------DLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC 150
                   DLS N   +  L+   C  G   E  R+ + M        E   G +++ LC
Sbjct: 360 VFNEMSKFDLSPNCVTYNALIGGHCHVGDFEEALRLLDHMEAAGLRLNEVTYGTLLNGLC 419

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
           +  +   A R++  MR   +    ++Y  ++ GLCK+G    A QL+    + G  P   
Sbjct: 420 KHEKFELAKRLLERMRVNDMVVGHIAYTVLIDGLCKNGMLDEAVQLVGNMYKDGVNPDVI 479

Query: 211 TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM 270
           TY  L+ G C   +++ A++++  M     V    I +  +   C   N TE + V   M
Sbjct: 480 TYSSLINGFCRVGNIKSAKEIICRMYRSGLVLNKIIYSTLIYNFCQHGNVTEAMKVYAVM 539

Query: 271 LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR 330
                  D  T N +++  C+ G++ EA K L  M       P+++T+  II G  ++G 
Sbjct: 540 NCNGHGADHFTCNVLVSSLCRDGKLGEAEKFLCHMSRIGL-VPNSITYDCIINGYGSIGD 598

Query: 331 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYA 390
              A +  +  M + G  P   TY ++L+GL +   + EAK+  N +  I    DS  Y 
Sbjct: 599 PLNAFS-FFDDMIKCGQHPSFFTYGSLLKGLCKGGNLVEAKKFLNRLHYIPGAVDSVMYN 657

Query: 391 IVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 450
            ++   C+S  L EA   +D +V  + + D+Y Y++++ GLCR GK   AV      +  
Sbjct: 658 TLLAETCKSGNLHEAVALFDKMVQNNVLPDSYTYSSLLTGLCRKGKAVTAVCLFGTAMGR 717

Query: 451 G-VTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG---- 505
           G + PN V Y  ++DG  K    + A+    EM K G  PD V +  +      RG    
Sbjct: 718 GTLFPNHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMMK 777

Query: 506 -NDF 508
            NDF
Sbjct: 778 ANDF 781



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 127/492 (25%), Positives = 227/492 (46%), Gaps = 12/492 (2%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           ++G A ++F +M      PN V+Y  LI G+C  G+ + A ++ D M   G+  N +TY 
Sbjct: 353 KIGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHVGDFEEALRLLDHMEAAGLRLNEVTYG 412

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
            L+ G+ +    E A     +L ERM+   D+ V + A+  L+D LC+ G ++E  ++  
Sbjct: 413 TLLNGLCKHEKFELAK----RLLERMRVN-DMVVGHIAYTVLIDGLCKNGMLDEAVQLVG 467

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
           +M +     +      +I+  CR G    A  ++  M + GL  + + Y+++++  C+HG
Sbjct: 468 NMYKDGVNPDVITYSSLINGFCRVGNIKSAKEIICRMYRSGLVLNKIIYSTLIYNFCQHG 527

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
               A ++       G+     T  VLV  LC +  L +A K L  M     V  +   +
Sbjct: 528 NVTEAMKVYAVMNCNGHGADHFTCNVLVSSLCRDGKLGEAEKFLCHMSRIGLVPNSITYD 587

Query: 249 IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM--V 306
             +     I +P    +    M++    P   T  +++ G CK G + EA K LN +  +
Sbjct: 588 CIINGYGSIGDPLNAFSFFDDMIKCGQHPSFFTYGSLLKGLCKGGNLVEAKKFLNRLHYI 647

Query: 307 AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 366
            G   A D+V + T++      G + EA+ L +  M Q    P   TY+++L GL R  +
Sbjct: 648 PG---AVDSVMYNTLLAETCKSGNLHEAVAL-FDKMVQNNVLPDSYTYSSLLTGLCRKGK 703

Query: 367 VEEAKEVFNCMLGIGVV-ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYA 425
              A  +F   +G G +  +   Y  ++DGL ++     A  F+++++      D   + 
Sbjct: 704 AVTAVCLFGTAMGRGTLFPNHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFN 763

Query: 426 AMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN 485
           A+I    R G++ +A  F   +   GV PN+  YN+++ G  K         +   M + 
Sbjct: 764 AIIDSCSRRGQMMKANDFFSTMRWWGVCPNLATYNILLHGFSKKQALLRYLSLYSTMMRE 823

Query: 486 GLNPDAVTWRIL 497
           G+ PD +T+  L
Sbjct: 824 GIFPDKLTFHSL 835



 Score =  181 bits (459), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 126/523 (24%), Positives = 231/523 (44%), Gaps = 39/523 (7%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   +   A +L   M+    V   ++YT LI G C+ G +D A ++   M   GV
Sbjct: 415 LNGLCKHEKFELAKRLLERMRVNDMVVGHIAYTVLIDGLCKNGMLDEAVQLVGNMYKDGV 474

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TYS L+ G  R  +++ A  ++ +++        L +N   ++ L+ + C+ G V
Sbjct: 475 NPDVITYSSLINGFCRVGNIKSAKEIICRMYR-----SGLVLNKIIYSTLIYNFCQHGNV 529

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E  ++   M       + F C  ++ SLCR G+   A + +  M + GL P+ ++Y+ I
Sbjct: 530 TEAMKVYAVMNCNGHGADHFTCNVLVSSLCRDGKLGEAEKFLCHMSRIGLVPNSITYDCI 589

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++G    G  + A+   ++ I+ G  PS  TY  L++GLC   +L +A+K L  +     
Sbjct: 590 INGYGSIGDPLNAFSFFDDMIKCGQHPSFFTYGSLLKGLCKGGNLVEAKKFLNRLHYIPG 649

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
              + + N  L   C   N  E + +   M+Q    PD  T ++++ G C+ G+   A+ 
Sbjct: 650 AVDSVMYNTLLAETCKSGNLHEAVALFDKMVQNNVLPDSYTYSSLLTGLCRKGKAVTAVC 709

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEAL------------------------- 335
           +    +      P+ V +T ++ GL   G  + A                          
Sbjct: 710 LFGTAMGRGTLFPNHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSC 769

Query: 336 ---------NLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
                    N  +  M   G  P + TYN +L G  + + +     +++ M+  G+  D 
Sbjct: 770 SRRGQMMKANDFFSTMRWWGVCPNLATYNILLHGFSKKQALLRYLSLYSTMMREGIFPDK 829

Query: 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE 446
            T+  +I GL +S   D   +    ++    + D + +  +I     SGK+ +A   +  
Sbjct: 830 LTFHSLILGLSKSGIPDLGVKLLGKMIMEGTLADQFTFNILINKYSESGKMRKAFDLVNF 889

Query: 447 LVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNP 489
           +   GV P+   YN + +G  K S  RE+  +L EM +NG+ P
Sbjct: 890 MNTLGVFPDRDTYNHIFNGLNKKSAFRESTVVLHEMLENGVIP 932



 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 128/482 (26%), Positives = 226/482 (46%), Gaps = 7/482 (1%)

Query: 16  LFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVL 75
           LF +M  +G  PNV ++  LI+G C  G +  A  +  +M   G +P  +TY+ L+    
Sbjct: 220 LFREMSDKGICPNVGTFNILINGLCVEGNLKKAGNLLKQMEENGFVPTIVTYNTLLNWYC 279

Query: 76  RTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKS 135
           + +   +A + +         E D+   N      +D+LC      + + + + M +   
Sbjct: 280 K-KGRYKAAIELIDYMICKGIEADVCTYNV----FIDNLCTNHRSAKAYLLLKKMRKEMI 334

Query: 136 VNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQ 195
              E     +I+   + G+   A++V   M K  L+P+ V+YN+++ G C  G    A +
Sbjct: 335 SPNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHVGDFEEALR 394

Query: 196 LLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALC 255
           LL+     G   +E TY  L+ GLC     E A+++L+ M     V       + +  LC
Sbjct: 395 LLDHMEAAGLRLNEVTYGTLLNGLCKHEKFELAKRLLERMRVNDMVVGHIAYTVLIDGLC 454

Query: 256 LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA 315
                 E + ++  M +    PDVIT +++INGFC++G I+ A +++  M        + 
Sbjct: 455 KNGMLDEAVQLVGNMYKDGVNPDVITYSSLINGFCRVGNIKSAKEIICRMYRSGLVL-NK 513

Query: 316 VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN 375
           + ++T+I+     G + EA+  +Y VM   G+     T N ++  L R  ++ EA++   
Sbjct: 514 IIYSTLIYNFCQHGNVTEAMK-VYAVMNCNGHGADHFTCNVLVSSLCRDGKLGEAEKFLC 572

Query: 376 CMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG 435
            M  IG+V +S TY  +I+G         A  F+DD++        + Y +++KGLC+ G
Sbjct: 573 HMSRIGLVPNSITYDCIINGYGSIGDPLNAFSFFDDMIKCGQHPSFFTYGSLLKGLCKGG 632

Query: 436 KIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWR 495
            + EA  FL  L       + V YN ++   CK     EA  +  +M +N + PD+ T+ 
Sbjct: 633 NLVEAKKFLNRLHYIPGAVDSVMYNTLLAETCKSGNLHEAVALFDKMVQNNVLPDSYTYS 692

Query: 496 IL 497
            L
Sbjct: 693 SL 694



 Score =  161 bits (408), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 122/482 (25%), Positives = 227/482 (47%), Gaps = 25/482 (5%)

Query: 26  VPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANV 85
           +P+V  +  LI  Y + G +D A + F+ +   G  P+  T ++++  +++ +  E    
Sbjct: 162 IPSV--FDLLIRVYLKEGMIDYAVETFELVGLVGFKPSVYTCNMILASMVKDKRTEL--- 216

Query: 86  LMFKLWERMKEEEDLSV--NNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACG 143
               +W   +E  D  +  N   F  L++ LC EG + +   + + M +   V       
Sbjct: 217 ----VWSLFREMSDKGICPNVGTFNILINGLCVEGNLKKAGNLLKQMEENGFVPTIVTYN 272

Query: 144 HMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQF 203
            +++  C+ GR   A  ++  M  +G+   + +YN  +  LC +    +AY LL++  + 
Sbjct: 273 TLLNWYCKKGRYKAAIELIDYMICKGIEADVCTYNVFIDNLCTNHRSAKAYLLLKKMRKE 332

Query: 204 GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC-NIYLRALCLIKNPTE 262
              P+E TY  L+ G   E  +  A +V   M SK D+    +  N  +   C + +  E
Sbjct: 333 MISPNEVTYNTLINGFVKEGKIGVAAQVFNEM-SKFDLSPNCVTYNALIGGHCHVGDFEE 391

Query: 263 LLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL-----NDMVAGKFCAPDAVT 317
            L +L  M     + + +T  T++NG CK  + E A ++L     NDMV G       + 
Sbjct: 392 ALRLLDHMEAAGLRLNEVTYGTLLNGLCKHEKFELAKRLLERMRVNDMVVGH------IA 445

Query: 318 FTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCM 377
           +T +I GL   G + EA+ L+   M + G +P ++TY++++ G  R+  ++ AKE+   M
Sbjct: 446 YTVLIDGLCKNGMLDEAVQLVGN-MYKDGVNPDVITYSSLINGFCRVGNIKSAKEIICRM 504

Query: 378 LGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKI 437
              G+V +   Y+ +I   C+   + EA + +  +    +  D++    ++  LCR GK+
Sbjct: 505 YRSGLVLNKIIYSTLIYNFCQHGNVTEAMKVYAVMNCNGHGADHFTCNVLVSSLCRDGKL 564

Query: 438 HEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            EA  FL  +   G+ PN + Y+ +I+G   +     A+    +M K G +P   T+  L
Sbjct: 565 GEAEKFLCHMSRIGLVPNSITYDCIINGYGSIGDPLNAFSFFDDMIKCGQHPSFFTYGSL 624

Query: 498 DK 499
            K
Sbjct: 625 LK 626



 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 129/533 (24%), Positives = 222/533 (41%), Gaps = 43/533 (8%)

Query: 1    MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
            +  LC   ++GEA K    M   G VPN ++Y  +I+GY   G+   A+  FD+M  CG 
Sbjct: 555  VSSLCRDGKLGEAEKFLCHMSRIGLVPNSITYDCIINGYGSIGDPLNAFSFFDDMIKCGQ 614

Query: 61   LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             P+  TY  L++G+ +  ++  A   + +L          +V++  +  L+   C+ G +
Sbjct: 615  HPSFFTYGSLLKGLCKGGNLVEAKKFLNRL-----HYIPGAVDSVMYNTLLAETCKSGNL 669

Query: 121  NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRG-LTPSLVSYNS 179
            +E   + + M Q   + + +    ++  LCR G+   A  +      RG L P+ V Y  
Sbjct: 670  HEAVALFDKMVQNNVLPDSYTYSSLLTGLCRKGKAVTAVCLFGTAMGRGTLFPNHVMYTC 729

Query: 180  IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
            +V GL K G    A+   EE ++ G  P    +  +++       + KA      M    
Sbjct: 730  LVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMMKANDFFSTMRWWG 789

Query: 240  DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                    NI L      +     L++   M++    PD +T +++I G  K G  +  +
Sbjct: 790  VCPNLATYNILLHGFSKKQALLRYLSLYSTMMREGIFPDKLTFHSLILGLSKSGIPDLGV 849

Query: 300  KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
            K+L  M+     A D  TF  +I      G++++A +L+   M   G  P   TYN +  
Sbjct: 850  KLLGKMIMEGTLA-DQFTFNILINKYSESGKMRKAFDLV-NFMNTLGVFPDRDTYNHIFN 907

Query: 360  GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
            GL +     E+  V + ML  GV+     Y  +I+G+C    +  A +  D++       
Sbjct: 908  GLNKKSAFRESTVVLHEMLENGVIPKHAQYITLINGMCRVGDIQGAFKLKDEMEALGFGS 967

Query: 420  DNYVYAAMIKGL-----------------------------------CRSGKIHEAVHFL 444
                 +AM++GL                                   CR  KI EA+   
Sbjct: 968  HEVAESAMVRGLLHCGKTEDAMLVLDHMLRMRLLPTIATFTTLMHRFCRDAKIAEALKLK 1027

Query: 445  YELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
              +   G+  ++V YNV+I G C       A+++  EMR   L P+  T+ +L
Sbjct: 1028 GVMELCGLKLDVVAYNVLIMGMCANGDSAAAFELYEEMRHRDLCPNITTYAVL 1080



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 127/496 (25%), Positives = 214/496 (43%), Gaps = 6/496 (1%)

Query: 4    LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            LC    + EA K    +       + V Y TL+   C++G +  A  +FD+M    VLP+
Sbjct: 628  LCKGGNLVEAKKFLNRLHYIPGAVDSVMYNTLLAETCKSGNLHEAVALFDKMVQNNVLPD 687

Query: 64   SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            S TYS L+ G+ R      A  L      R      L  N+  +  LVD L + G+    
Sbjct: 688  SYTYSSLLTGLCRKGKAVTAVCLFGTAMGR----GTLFPNHVMYTCLVDGLSKAGHPKAA 743

Query: 124  FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            F   E+M +  +  +  A   +IDS  R G+   A+     MR  G+ P+L +YN ++HG
Sbjct: 744  FYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMMKANDFFSTMRWWGVCPNLATYNILLHG 803

Query: 184  LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
              K    +R   L    ++ G  P + T+  L+ GL      +   K+L  M+ +  +  
Sbjct: 804  FSKKQALLRYLSLYSTMMREGIFPDKLTFHSLILGLSKSGIPDLGVKLLGKMIMEGTLAD 863

Query: 244  TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                NI +          +  +++ FM      PD  T N + NG  K     E+  VL+
Sbjct: 864  QFTFNILINKYSESGKMRKAFDLVNFMNTLGVFPDRDTYNHIFNGLNKKSAFRESTVVLH 923

Query: 304  DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            +M+      P    + T+I G+  VG IQ A  L  + M   G+    V  +A++RGL  
Sbjct: 924  EMLENG-VIPKHAQYITLINGMCRVGDIQGAFKLKDE-MEALGFGSHEVAESAMVRGLLH 981

Query: 364  LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
              + E+A  V + ML + ++    T+  ++   C   ++ EA +    +       D   
Sbjct: 982  CGKTEDAMLVLDHMLRMRLLPTIATFTTLMHRFCRDAKIAEALKLKGVMELCGLKLDVVA 1041

Query: 424  YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
            Y  +I G+C +G    A     E+    + PNI  Y V++D     +   +  ++L +++
Sbjct: 1042 YNVLIMGMCANGDSAAAFELYEEMRHRDLCPNITTYAVLVDAISAANNLIQGEKLLTDLQ 1101

Query: 484  KNGLNPDAVTWRILDK 499
            + GL     + + LDK
Sbjct: 1102 ERGLISWGGSTQHLDK 1117



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 102/231 (44%), Gaps = 37/231 (16%)

Query: 276 QPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEAL 335
           +P V T N ++    K  R E    +  +M     C P+  TF  +I GL   G +++A 
Sbjct: 195 KPSVYTCNMILASMVKDKRTELVWSLFREMSDKGIC-PNVGTFNILINGLCVEGNLKKAG 253

Query: 336 NLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG 395
           NLL Q M + G+ P IVTYN +L    +  R + A E+ + M+  G+ AD  TY + ID 
Sbjct: 254 NLLKQ-MEENGFVPTIVTYNTLLNWYCKKGRYKAAIELIDYMICKGIEADVCTYNVFIDN 312

Query: 396 LCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN 455
           LC ++                                RS K   A   L ++    ++PN
Sbjct: 313 LCTNH--------------------------------RSAK---AYLLLKKMRKEMISPN 337

Query: 456 IVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
            V YN +I+G  K      A Q+  EM K  L+P+ VT+  L   H + G+
Sbjct: 338 EVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHVGD 388



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 52/93 (55%)

Query: 1    MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
            M + C  +++ EA KL   M+  G   +VV+Y  LI G C  G+   A+++++EMRH  +
Sbjct: 1011 MHRFCRDAKIAEALKLKGVMELCGLKLDVVAYNVLIMGMCANGDSAAAFELYEEMRHRDL 1070

Query: 61   LPNSLTYSVLVRGVLRTRDVERANVLMFKLWER 93
             PN  TY+VLV  +    ++ +   L+  L ER
Sbjct: 1071 CPNITTYAVLVDAISAANNLIQGEKLLTDLQER 1103


>gi|357115900|ref|XP_003559723.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like, partial [Brachypodium distachyon]
          Length = 907

 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 148/597 (24%), Positives = 260/597 (43%), Gaps = 100/597 (16%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C   RV  A     +M+  G   N+V+Y  ++ GYCR G+ +VA K+   ++  G+ PN 
Sbjct: 175 CRDGRVAHAADFLKEMEEMGLDVNLVAYHAVMDGYCRIGQTEVARKLLHSLQVKGLSPNV 234

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           +TY++LV+G  +   +E A     K+ + +KE E + ++  A+  L++  C+ G + +  
Sbjct: 235 VTYTLLVKGYCKEGRMEEAE----KVVKEIKENEKIVIDEVAYGALINGYCQRGRMEDAN 290

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
           R+ ++M         F    MI+  C+ GR     +++     RG+     SYN++V G 
Sbjct: 291 RVRDEMIDAGVQVNMFVYNTMINGYCKLGRMGEVEKLLQANEYRGVNLDEYSYNTLVDGY 350

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
           C+ G   +A++  +  ++ G+  +  TY  L+ G C    ++ A K+   ML +  V   
Sbjct: 351 CRKGFMTKAFETCDMMVRNGFTGTTLTYNTLLNGFCSRGAIDDALKLWFLMLKRGVVPNE 410

Query: 245 RIC-----------------------------------NIYLRALCLIKNPTELLNVLVF 269
             C                                   N  +  LC  +  TE   +   
Sbjct: 411 ISCSTLLDGFFKAGKTEQALNLWKETLARGLARNVVTINTVINGLCKNRRMTEAEELFHR 470

Query: 270 MLQTQCQPDVITLNTVINGFCKMG--------RIE-------EALKVLNDMVAGKFCA-- 312
           M +  C  D +T  T+I+G+CK+G        RIE        ++++ N  + G F A  
Sbjct: 471 MKEWSCPCDSLTYRTLIDGYCKLGDLGRATQIRIEMENLGFVPSVEMFNSFITGLFIAKQ 530

Query: 313 -----------------PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN 355
                            P+ VT+  +I G    G + +A  +LY  M ++G  P +   +
Sbjct: 531 SGKVNDIRVEMSAKGLSPNTVTYGALIAGWCKEGNLHDAC-ILYFEMVEKGLKPNLFICS 589

Query: 356 AVLRGLFRLRRVEEAKEVFNCM-------------LGIGVVAD-------------STTY 389
            ++   +R  +V+EA  V   +             L IG VA                 +
Sbjct: 590 VLVSCFYREGKVDEANLVLQKLADTDMIQDCSASTLNIGKVAHIIESLAGGNHQSAKIMW 649

Query: 390 AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449
            IVI GLC+  ++ +A+  ++D+     I DN+ Y+++I G   SG I  A     E++ 
Sbjct: 650 NIVILGLCKLGRVADARNLFEDLKVKGFIPDNFTYSSLIHGCSASGSIDLAFGLRDEMLS 709

Query: 450 SGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           + +TPNIV YN +I G CK      A  +  +++  G++P+A+T+  L   H   GN
Sbjct: 710 ARLTPNIVTYNSLIYGLCKSCNVSRAVSLFNKLQSKGISPNAITYNTLIDGHCKDGN 766



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 145/595 (24%), Positives = 259/595 (43%), Gaps = 98/595 (16%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHC-G 59
           MD  C + +   A KL   ++ +G  PNVV+YT L+ GYC+ G M+ A KV  E++    
Sbjct: 206 MDGYCRIGQTEVARKLLHSLQVKGLSPNVVTYTLLVKGYCKEGRMEEAEKVVKEIKENEK 265

Query: 60  VLPNSLTYSVLVRGVLRTRDVERAN------------VLMF----------KLWERMKEE 97
           ++ + + Y  L+ G  +   +E AN            V MF          KL  RM E 
Sbjct: 266 IVIDEVAYGALINGYCQRGRMEDANRVRDEMIDAGVQVNMFVYNTMINGYCKLG-RMGEV 324

Query: 98  EDL---------SVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDS 148
           E L         +++  ++  LVD  CR+G++ + F   + M +            +++ 
Sbjct: 325 EKLLQANEYRGVNLDEYSYNTLVDGYCRKGFMTKAFETCDMMVRNGFTGTTLTYNTLLNG 384

Query: 149 LCRSGRNHGASRVVYVMRKRGLTPS----------------------------------- 173
            C  G    A ++ ++M KRG+ P+                                   
Sbjct: 385 FCSRGAIDDALKLWFLMLKRGVVPNEISCSTLLDGFFKAGKTEQALNLWKETLARGLARN 444

Query: 174 LVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQ 233
           +V+ N++++GLCK+     A +L     ++       TY+ L++G C   DL +A ++  
Sbjct: 445 VVTINTVINGLCKNRRMTEAEELFHRMKEWSCPCDSLTYRTLIDGYCKLGDLGRATQIRI 504

Query: 234 FMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMG 293
            M +   V    + N ++  L + K   ++ ++ V M      P+ +T   +I G+CK G
Sbjct: 505 EMENLGFVPSVEMFNSFITGLFIAKQSGKVNDIRVEMSAKGLSPNTVTYGALIAGWCKEG 564

Query: 294 RIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQR-------- 345
            + +A  +  +MV  K   P+    + ++      G++ EA NL+ Q +           
Sbjct: 565 NLHDACILYFEMVE-KGLKPNLFICSVLVSCFYREGKVDEA-NLVLQKLADTDMIQDCSA 622

Query: 346 ------------------GYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADST 387
                              +    + +N V+ GL +L RV +A+ +F  +   G + D+ 
Sbjct: 623 STLNIGKVAHIIESLAGGNHQSAKIMWNIVILGLCKLGRVADARNLFEDLKVKGFIPDNF 682

Query: 388 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYEL 447
           TY+ +I G   S  +D A    D+++      +   Y ++I GLC+S  +  AV    +L
Sbjct: 683 TYSSLIHGCSASGSIDLAFGLRDEMLSARLTPNIVTYNSLIYGLCKSCNVSRAVSLFNKL 742

Query: 448 VDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
              G++PN + YN +IDG CK     EA+++ ++M K G+ P   T+ IL  +HG
Sbjct: 743 QSKGISPNAITYNTLIDGHCKDGNTTEAFKLKQKMIKEGIQPTVFTYTIL--IHG 795



 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 128/493 (25%), Positives = 235/493 (47%), Gaps = 24/493 (4%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C    + +A KL+F M  RG VPN +S +TL+ G+ + G+ + A  ++ E    G+
Sbjct: 382 LNGFCSRGAIDDALKLWFLMLKRGVVPNEISCSTLLDGFFKAGKTEQALNLWKETLARGL 441

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             N +T + ++ G+ + R +  A     +L+ RMKE      ++  +  L+D  C+ G +
Sbjct: 442 ARNVVTINTVINGLCKNRRMTEAE----ELFHRMKEWS-CPCDSLTYRTLIDGYCKLGDL 496

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
               +I  +M     V         I  L  + ++   + +   M  +GL+P+ V+Y ++
Sbjct: 497 GRATQIRIEMENLGFVPSVEMFNSFITGLFIAKQSGKVNDIRVEMSAKGLSPNTVTYGAL 556

Query: 181 VHGLCK----HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFML 236
           + G CK    H  C+  ++++E+G++    P+     VLV     E  +++A  VLQ + 
Sbjct: 557 IAGWCKEGNLHDACILYFEMVEKGLK----PNLFICSVLVSCFYREGKVDEANLVLQKL- 611

Query: 237 SKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIE 296
              D D  + C+          N  ++ +++  +     Q   I  N VI G CK+GR+ 
Sbjct: 612 --ADTDMIQDCSAS------TLNIGKVAHIIESLAGGNHQSAKIMWNIVILGLCKLGRVA 663

Query: 297 EALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
           +A  +  D+    F  PD  T++++I G    G I  A  L  +++  R  +P IVTYN+
Sbjct: 664 DARNLFEDLKVKGFI-PDNFTYSSLIHGCSASGSIDLAFGLRDEMLSAR-LTPNIVTYNS 721

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416
           ++ GL +   V  A  +FN +   G+  ++ TY  +IDG C+     EA +    ++   
Sbjct: 722 LIYGLCKSCNVSRAVSLFNKLQSKGISPNAITYNTLIDGHCKDGNTTEAFKLKQKMIKEG 781

Query: 417 NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAY 476
                + Y  +I GLC  G + EA+  L +++++ V PN + Y  +I G  +    +   
Sbjct: 782 IQPTVFTYTILIHGLCTQGYMEEAIKLLDQMIENNVDPNFITYWTLIQGYARCGNMKAIT 841

Query: 477 QILREMRKNGLNP 489
           ++  EM   GL P
Sbjct: 842 KLYNEMHICGLLP 854



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 133/523 (25%), Positives = 234/523 (44%), Gaps = 74/523 (14%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           ++ +A  +F +M   G    + S   L++   + G++  A  VF +MR  G LP+  T +
Sbjct: 109 QLKDALYVFDEMGKAGSRRTLRSCNRLLNQLVQAGDIGTAVAVFQQMRCAGTLPDDFTVA 168

Query: 69  VLVRGVLRTRDVERANVLMFKLWE------------------RMKEEE------------ 98
           ++ +   R   V  A   + ++ E                  R+ + E            
Sbjct: 169 IMAKAYCRDGRVAHAADFLKEMEEMGLDVNLVAYHAVMDGYCRIGQTEVARKLLHSLQVK 228

Query: 99  DLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQG-KSVNEEFACGHMIDSLCRSGRNHG 157
            LS N   +  LV   C+EG + E  ++ +++ +  K V +E A G +I+  C+ GR   
Sbjct: 229 GLSPNVVTYTLLVKGYCKEGRMEEAEKVVKEIKENEKIVIDEVAYGALINGYCQRGRMED 288

Query: 158 ASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVE 217
           A+RV   M   G+  ++  YN++++G CK G      +LL+     G    E++Y  LV+
Sbjct: 289 ANRVRDEMIDAGVQVNMFVYNTMINGYCKLGRMGEVEKLLQANEYRGVNLDEYSYNTLVD 348

Query: 218 GLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQP 277
           G C +  + KA +    M+       T                                 
Sbjct: 349 GYCRKGFMTKAFETCDMMVRNGFTGTT--------------------------------- 375

Query: 278 DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNL 337
             +T NT++NGFC  G I++ALK+   M+  +   P+ ++ +T++ G    G+ ++ALNL
Sbjct: 376 --LTYNTLLNGFCSRGAIDDALKLWFLMLK-RGVVPNEISCSTLLDGFFKAGKTEQALNL 432

Query: 338 LYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLC 397
             + +  RG +  +VT N V+ GL + RR+ EA+E+F+ M       DS TY  +IDG C
Sbjct: 433 WKETLA-RGLARNVVTINTVINGLCKNRRMTEAEELFHRMKEWSCPCDSLTYRTLIDGYC 491

Query: 398 ESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLC---RSGKIHEAVHFLYELVDSGVTP 454
           +   L  A +   ++     +    ++ + I GL    +SGK+++      E+   G++P
Sbjct: 492 KLGDLGRATQIRIEMENLGFVPSVEMFNSFITGLFIAKQSGKVND---IRVEMSAKGLSP 548

Query: 455 NIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           N V Y  +I G CK     +A  +  EM + GL P+     +L
Sbjct: 549 NTVTYGALIAGWCKEGNLHDACILYFEMVEKGLKPNLFICSVL 591



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 93/401 (23%), Positives = 181/401 (45%), Gaps = 3/401 (0%)

Query: 98  EDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHG 157
           +D S + A+F  L+ +    G + +   + ++M +  S     +C  +++ L ++G    
Sbjct: 88  KDFSFSAASFDLLLRAHADAGQLKDALYVFDEMGKAGSRRTLRSCNRLLNQLVQAGDIGT 147

Query: 158 ASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVE 217
           A  V   MR  G  P   +   +    C+ G    A   L+E  + G   +   Y  +++
Sbjct: 148 AVAVFQQMRCAGTLPDDFTVAIMAKAYCRDGRVAHAADFLKEMEEMGLDVNLVAYHAVMD 207

Query: 218 GLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQ-CQ 276
           G C     E ARK+L  +  K          + ++  C      E   V+  + + +   
Sbjct: 208 GYCRIGQTEVARKLLHSLQVKGLSPNVVTYTLLVKGYCKEGRMEEAEKVVKEIKENEKIV 267

Query: 277 PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALN 336
            D +    +ING+C+ GR+E+A +V ++M+       +   + T+I G   +GR+ E   
Sbjct: 268 IDEVAYGALINGYCQRGRMEDANRVRDEMIDAGV-QVNMFVYNTMINGYCKLGRMGEVEK 326

Query: 337 LLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 396
           LL Q    RG +    +YN ++ G  R   + +A E  + M+  G    + TY  +++G 
Sbjct: 327 LL-QANEYRGVNLDEYSYNTLVDGYCRKGFMTKAFETCDMMVRNGFTGTTLTYNTLLNGF 385

Query: 397 CESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNI 456
           C    +D+A + W  ++    + +    + ++ G  ++GK  +A++   E +  G+  N+
Sbjct: 386 CSRGAIDDALKLWFLMLKRGVVPNEISCSTLLDGFFKAGKTEQALNLWKETLARGLARNV 445

Query: 457 VCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           V  N VI+G CK     EA ++   M++     D++T+R L
Sbjct: 446 VTINTVINGLCKNRRMTEAEELFHRMKEWSCPCDSLTYRTL 486



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 81/161 (50%)

Query: 345 RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 404
           + +S    +++ +LR      ++++A  VF+ M   G      +   +++ L ++  +  
Sbjct: 88  KDFSFSAASFDLLLRAHADAGQLKDALYVFDEMGKAGSRRTLRSCNRLLNQLVQAGDIGT 147

Query: 405 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
           A   +  +     + D++  A M K  CR G++  A  FL E+ + G+  N+V Y+ V+D
Sbjct: 148 AVAVFQQMRCAGTLPDDFTVAIMAKAYCRDGRVAHAADFLKEMEEMGLDVNLVAYHAVMD 207

Query: 465 GACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
           G C++     A ++L  ++  GL+P+ VT+ +L K +   G
Sbjct: 208 GYCRIGQTEVARKLLHSLQVKGLSPNVVTYTLLVKGYCKEG 248


>gi|356562834|ref|XP_003549673.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Glycine max]
          Length = 747

 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 136/505 (26%), Positives = 247/505 (48%), Gaps = 26/505 (5%)

Query: 4   LCGLSRVGE---AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           + GL   GE   A +LF +M +R   P+VV++  L+H  C+ G +  + ++  ++   GV
Sbjct: 188 VAGLYDSGEHDHARELFDEMLARCLCPDVVAFNKLVHVLCKKGLVFESERLLGKVLKRGV 247

Query: 61  LPNSLTYSVLVRGVLRTRDVERA--NVLMFKLWERMK-------EEEDLSVNNAAFANLV 111
            PN  T+++ V+G+ R   ++RA  N  + +  E ++       E +DL+ N+     ++
Sbjct: 248 CPNLFTFNIFVQGLCREGALDRAVRNSRVVEAEEYLRKMVNGGFEPDDLTYNS-----II 302

Query: 112 DSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLT 171
           D  C++G V +  R+ +D        +EF    +I+  C+ G    A  V      +GL 
Sbjct: 303 DGYCKKGMVQDANRVLKDAVFKGFKPDEFTYCSLINGFCKDGDPDRAMAVFKDGLGKGLR 362

Query: 172 PSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKV 231
           PS+V YN+++ GL + G  + A QL+ E  + G LP+  TY +++ GLC    +  A  +
Sbjct: 363 PSIVLYNTLIKGLSQQGLILPALQLMNEMAENGCLPNIWTYNLVINGLCKMGCVSDASHL 422

Query: 232 LQFMLSKKDVDRTRICNIYLRALCL---IKNPTELLNVLVFMLQTQCQPDVITLNTVING 288
           +   ++K         N  +   C    + + TE++N    M      PDVIT NT++NG
Sbjct: 423 VDDAIAKGCPPDIFTYNTLIDGYCKQLKLDSATEMVNR---MWSQGMTPDVITYNTLLNG 479

Query: 289 FCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYS 348
            CK G+ EE +++   M   K C P+ +T+  I+  L    ++ EA++LL + M  +G  
Sbjct: 480 LCKAGKSEEVMEIFKAM-EEKGCTPNIITYNIIVDSLCKAKKVNEAVDLLGE-MKSKGLK 537

Query: 349 PGIVTYNAVLRGLFRLRRVEEAKEVFNCM-LGIGVVADSTTYAIVIDGLCESNQLDEAKR 407
           P +V++  +  G  ++  ++ A ++F  M     V   + TY I++    E   ++ A +
Sbjct: 538 PDVVSFGTLFTGFCKIGDIDGAYQLFRRMEKQYDVCHTTATYNIIVSAFSEQLNMNMAMK 597

Query: 408 FWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGAC 467
            +  +       DNY Y  +I G C+ G I +   FL E ++    P++  +  V++  C
Sbjct: 598 LFSVMKNSGCDPDNYTYRVVIDGFCKMGNITQGYKFLLENMEKRFIPSLTTFGRVLNCLC 657

Query: 468 KLSMKREAYQILREMRKNGLNPDAV 492
                 EA  I+  M + G+ P+ V
Sbjct: 658 VKDKVHEAVGIIHLMLQKGIVPETV 682



 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 142/506 (28%), Positives = 239/506 (47%), Gaps = 37/506 (7%)

Query: 12  EAHKLFFDMKSRGHVPNVV---SYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           E  KL  +M  R +V N +   +Y   +  Y R G++  A   F+ M      P+  +++
Sbjct: 58  EMEKLLSEM--RENVNNALLEGAYIEAMKNYGRKGKVQEAVDTFERMDFYNCDPSVHSHN 115

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
            ++  ++      +A+    K++ RM++   +  +   +   + S C+        R+  
Sbjct: 116 AIMNILVEFGYHNQAH----KVYMRMRDR-GVQSDVYTYTIRIKSFCKTARPYAALRLLR 170

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
           +MP+    +   A   ++  L  SG +  A  +   M  R L P +V++N +VH LCK G
Sbjct: 171 NMPELGCDSNAVAYCTVVAGLYDSGEHDHARELFDEMLARCLCPDVVAFNKLVHVLCKKG 230

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKA-------------RKVLQFM 235
               + +LL + ++ G  P+  T+ + V+GLC E  L++A             RK++   
Sbjct: 231 LVFESERLLGKVLKRGVCPNLFTFNIFVQGLCREGALDRAVRNSRVVEAEEYLRKMVNGG 290

Query: 236 LSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 295
               D+    I + Y +   ++++   +L   VF      +PD  T  ++INGFCK G  
Sbjct: 291 FEPDDLTYNSIIDGYCKK-GMVQDANRVLKDAVF---KGFKPDEFTYCSLINGFCKDGDP 346

Query: 296 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN 355
           + A+ V  D + GK   P  V + T+I GL   G I  AL L+ + M + G  P I TYN
Sbjct: 347 DRAMAVFKDGL-GKGLRPSIVLYNTLIKGLSQQGLILPALQLMNE-MAENGCLPNIWTYN 404

Query: 356 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA----KRFWDD 411
            V+ GL ++  V +A  + +  +  G   D  TY  +IDG C+  +LD A     R W  
Sbjct: 405 LVINGLCKMGCVSDASHLVDDAIAKGCPPDIFTYNTLIDGYCKQLKLDSATEMVNRMWSQ 464

Query: 412 IVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSM 471
            + P    D   Y  ++ GLC++GK  E +     + + G TPNI+ YN+++D  CK   
Sbjct: 465 GMTP----DVITYNTLLNGLCKAGKSEEVMEIFKAMEEKGCTPNIITYNIIVDSLCKAKK 520

Query: 472 KREAYQILREMRKNGLNPDAVTWRIL 497
             EA  +L EM+  GL PD V++  L
Sbjct: 521 VNEAVDLLGEMKSKGLKPDVVSFGTL 546



 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 130/518 (25%), Positives = 245/518 (47%), Gaps = 24/518 (4%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +   C  +R   A +L  +M   G   N V+Y T++ G   +GE D A ++FDEM    +
Sbjct: 153 IKSFCKTARPYAALRLLRNMPELGCDSNAVAYCTVVAGLYDSGEHDHARELFDEMLARCL 212

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ + ++ LV  + +   V  +  L+ K+ +R      +  N   F   V  LCREG +
Sbjct: 213 CPDVVAFNKLVHVLCKKGLVFESERLLGKVLKR-----GVCPNLFTFNIFVQGLCREGAL 267

Query: 121 NEVFRIA---------EDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLT 171
           +   R +           M  G    ++     +ID  C+ G    A+RV+     +G  
Sbjct: 268 DRAVRNSRVVEAEEYLRKMVNGGFEPDDLTYNSIIDGYCKKGMVQDANRVLKDAVFKGFK 327

Query: 172 PSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKV 231
           P   +Y S+++G CK G   RA  + ++G+  G  PS   Y  L++GL  +  +  A ++
Sbjct: 328 PDEFTYCSLINGFCKDGDPDRAMAVFKDGLGKGLRPSIVLYNTLIKGLSQQGLILPALQL 387

Query: 232 LQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK 291
           +  M     +      N+ +  LC +   ++  +++   +   C PD+ T NT+I+G+CK
Sbjct: 388 MNEMAENGCLPNIWTYNLVINGLCKMGCVSDASHLVDDAIAKGCPPDIFTYNTLIDGYCK 447

Query: 292 MGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGI 351
             +++ A +++N M +     PD +T+ T++ GL   G+ +E +  +++ M ++G +P I
Sbjct: 448 QLKLDSATEMVNRMWSQGM-TPDVITYNTLLNGLCKAGKSEEVME-IFKAMEEKGCTPNI 505

Query: 352 VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDD 411
           +TYN ++  L + ++V EA ++   M   G+  D  ++  +  G C+   +D A + +  
Sbjct: 506 ITYNIIVDSLCKAKKVNEAVDLLGEMKSKGLKPDVVSFGTLFTGFCKIGDIDGAYQLFRR 565

Query: 412 IVWPSNI-HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLS 470
           +    ++ H    Y  ++        ++ A+     + +SG  P+   Y VVIDG CK+ 
Sbjct: 566 MEKQYDVCHTTATYNIIVSAFSEQLNMNMAMKLFSVMKNSGCDPDNYTYRVVIDGFCKMG 625

Query: 471 MKREAYQILREMRKNGLNPDAVTW-RIL------DKLH 501
              + Y+ L E  +    P   T+ R+L      DK+H
Sbjct: 626 NITQGYKFLLENMEKRFIPSLTTFGRVLNCLCVKDKVH 663



 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 130/482 (26%), Positives = 221/482 (45%), Gaps = 51/482 (10%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           +AHK++  M+ RG   +V +YT  I  +C+T     A ++   M   G   N++ Y  +V
Sbjct: 129 QAHKVYMRMRDRGVQSDVYTYTIRIKSFCKTARPYAALRLLRNMPELGCDSNAVAYCTVV 188

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP 131
            G+  + + + A  L  ++  R      L  +  AF  LV  LC++G V E  R+   + 
Sbjct: 189 AGLYDSGEHDHARELFDEMLARC-----LCPDVVAFNKLVHVLCKKGLVFESERLLGKVL 243

Query: 132 QGKSVNEEFACGHMIDSLCRSG---RNHGASRVVYV------MRKRGLTPSLVSYNSIVH 182
           +       F     +  LCR G   R    SRVV        M   G  P  ++YNSI+ 
Sbjct: 244 KRGVCPNLFTFNIFVQGLCREGALDRAVRNSRVVEAEEYLRKMVNGGFEPDDLTYNSIID 303

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           G CK G    A ++L++ +  G+ P E TY  L+ G C + D ++A  V +  L K    
Sbjct: 304 GYCKKGMVQDANRVLKDAVFKGFKPDEFTYCSLINGFCKDGDPDRAMAVFKDGLGK---- 359

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
                                            +P ++  NT+I G  + G I  AL+++
Sbjct: 360 -------------------------------GLRPSIVLYNTLIKGLSQQGLILPALQLM 388

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
           N+M A   C P+  T+  +I GL  +G + +A +L+   +  +G  P I TYN ++ G  
Sbjct: 389 NEM-AENGCLPNIWTYNLVINGLCKMGCVSDASHLVDDAIA-KGCPPDIFTYNTLIDGYC 446

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
           +  +++ A E+ N M   G+  D  TY  +++GLC++ + +E    +  +       +  
Sbjct: 447 KQLKLDSATEMVNRMWSQGMTPDVITYNTLLNGLCKAGKSEEVMEIFKAMEEKGCTPNII 506

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
            Y  ++  LC++ K++EAV  L E+   G+ P++V +  +  G CK+     AYQ+ R M
Sbjct: 507 TYNIIVDSLCKAKKVNEAVDLLGEMKSKGLKPDVVSFGTLFTGFCKIGDIDGAYQLFRRM 566

Query: 483 RK 484
            K
Sbjct: 567 EK 568



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 115/471 (24%), Positives = 209/471 (44%), Gaps = 35/471 (7%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D+    SRV EA +    M + G  P+ ++Y ++I GYC+ G +  A +V  +    G 
Sbjct: 267 LDRAVRNSRVVEAEEYLRKMVNGGFEPDDLTYNSIIDGYCKKGMVQDANRVLKDAVFKGF 326

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFK--LWERMKEEEDLSVNNAAFANLVDSLCREG 118
            P+  TY  L+ G  +  D +RA + +FK  L + ++    L      +  L+  L ++G
Sbjct: 327 KPDEFTYCSLINGFCKDGDPDRA-MAVFKDGLGKGLRPSIVL------YNTLIKGLSQQG 379

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
            +    ++  +M +   +   +    +I+ LC+ G    AS +V     +G  P + +YN
Sbjct: 380 LILPALQLMNEMAENGCLPNIWTYNLVINGLCKMGCVSDASHLVDDAIAKGCPPDIFTYN 439

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
           +++ G CK      A +++      G  P   TY  L+ GLC     E+  ++ + M  K
Sbjct: 440 TLIDGYCKQLKLDSATEMVNRMWSQGMTPDVITYNTLLNGLCKAGKSEEVMEIFKAMEEK 499

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
                    NI + +LC  K   E +++L  M     +PDV++  T+  GFCK+G I+ A
Sbjct: 500 GCTPNIITYNIIVDSLCKAKKVNEAVDLLGEMKSKGLKPDVVSFGTLFTGFCKIGDIDGA 559

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNL-----LYQVMPQRGYSPGIVT 353
            ++   M          V  TT  + ++ V    E LN+     L+ VM   G  P   T
Sbjct: 560 YQLFRRMEKQY-----DVCHTTATYNII-VSAFSEQLNMNMAMKLFSVMKNSGCDPDNYT 613

Query: 354 YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA----KRFW 409
           Y  V+ G  ++  + +  +     +    +   TT+  V++ LC  +++ EA        
Sbjct: 614 YRVVIDGFCKMGNITQGYKFLLENMEKRFIPSLTTFGRVLNCLCVKDKVHEAVGIIHLML 673

Query: 410 DDIVWPSNIH-----DNYVYAA---MIKGLCRSGKIHEAVHFLYELVDSGV 452
              + P  ++     D  V AA   +++ L + G I    ++ YEL+  G+
Sbjct: 674 QKGIVPETVNTIFEADKKVVAAPKILVEDLLKKGHI---AYYTYELLYDGI 721



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 106/239 (44%), Gaps = 11/239 (4%)

Query: 276 QPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEAL 335
           Q DV T    I  FCK  R   AL++L +M     C  +AV + T++ GL + G    A 
Sbjct: 143 QSDVYTYTIRIKSFCKTARPYAALRLLRNMPELG-CDSNAVAYCTVVAGLYDSGEHDHAR 201

Query: 336 NLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG 395
            L +  M  R   P +V +N ++  L +   V E++ +   +L  GV  +  T+ I + G
Sbjct: 202 EL-FDEMLARCLCPDVVAFNKLVHVLCKKGLVFESERLLGKVLKRGVCPNLFTFNIFVQG 260

Query: 396 LCESNQLD---------EAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE 446
           LC    LD         EA+ +   +V      D+  Y ++I G C+ G + +A   L +
Sbjct: 261 LCREGALDRAVRNSRVVEAEEYLRKMVNGGFEPDDLTYNSIIDGYCKKGMVQDANRVLKD 320

Query: 447 LVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
            V  G  P+   Y  +I+G CK      A  + ++    GL P  V +  L K    +G
Sbjct: 321 AVFKGFKPDEFTYCSLINGFCKDGDPDRAMAVFKDGLGKGLRPSIVLYNTLIKGLSQQG 379


>gi|50508175|dbj|BAD30981.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50508218|dbj|BAD31653.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 918

 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 135/499 (27%), Positives = 238/499 (47%), Gaps = 7/499 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC    V +A  +   +      P+  +YT++I G+CR  ++D A +VF++M   G 
Sbjct: 222 INALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGC 281

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN++TYS L+ G+  +  V  A    F L   M     L   +     ++ +LC  G  
Sbjct: 282 EPNTVTYSTLINGLCDSGRVNEA----FDLIREMILHGILPTAHTCTGPII-ALCDMGCY 336

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            + +R+  DM         +    +I  LC SG    A  + + M + G+ P+ V+YN++
Sbjct: 337 EDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNAL 396

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++ L ++     A+ +L    + G  P+  TY  +++G C   D +KA  V+  ML +  
Sbjct: 397 INILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGH 456

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                  N  ++  C   N T  L +L  M    C+PD  +   +I GFCK+ ++E A  
Sbjct: 457 SANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFG 516

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           + N+MV    C P+ VT+T +I G     ++  A +LL + M + G  P + TYN ++ G
Sbjct: 517 LFNEMVDDGLC-PNEVTYTALIDGYCKDEKLDTATSLL-EHMKRSGCRPNVQTYNVLIHG 574

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L +      A+E+   M+  G+  +  TY  +IDGLC++     A   ++ ++    + +
Sbjct: 575 LTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPN 634

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              Y+++I+ L + GK+ EA +   EL   G+ P+ + Y  +I+          A+  L 
Sbjct: 635 LLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLG 694

Query: 481 EMRKNGLNPDAVTWRILDK 499
            M K G  P   T+ +L K
Sbjct: 695 RMIKAGCQPTLWTYGVLIK 713



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 129/505 (25%), Positives = 228/505 (45%), Gaps = 45/505 (8%)

Query: 4   LCGLSRVGEAHKL---FFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           L  LSR+G    +   +  M S G  PN++ Y  +I+  C+ G +  A  +  ++    +
Sbjct: 187 LIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEM 246

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P++ TY+ ++ G  R  D++ A     +++ +M +E     N   ++ L++ LC  G V
Sbjct: 247 SPDTFTYTSMILGHCRKHDLDSA----LQVFNQMAKE-GCEPNTVTYSTLINGLCDSGRV 301

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           NE F +  +M     +     C   I +LC  G    A R+   M+ +G  P++ +Y ++
Sbjct: 302 NEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTAL 361

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GLC  G    A  L     + G  P+  TY  L+  L                     
Sbjct: 362 ISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINIL--------------------- 400

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           V+  RI   ++              VL  M +  C P+++T N +I G+C +G  ++A+ 
Sbjct: 401 VENRRIKYAFV--------------VLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAML 446

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           V+N+M+     A + VT+ TII G  + G    AL +L  +M   G  P   +Y  ++ G
Sbjct: 447 VMNNMLQRGHSA-NLVTYNTIIKGYCDSGNTTSALRIL-DLMRDGGCKPDEWSYTELICG 504

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
             ++ ++E A  +FN M+  G+  +  TY  +IDG C+  +LD A    + +       +
Sbjct: 505 FCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPN 564

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              Y  +I GL +      A      +++ G+ PN+V Y  +IDG CK      A ++  
Sbjct: 565 VQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFN 624

Query: 481 EMRKNGLNPDAVTWRILDKLHGNRG 505
           +M + G  P+ +T+  L +  G  G
Sbjct: 625 KMIEQGCLPNLLTYSSLIRALGQEG 649



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 128/507 (25%), Positives = 221/507 (43%), Gaps = 31/507 (6%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC +    +A +LF DMK++G  PNV +YT LI G C +G + VA  +F  M   GV PN
Sbjct: 330 LCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPN 389

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           ++TY+ L+  ++  R ++ A V++      +      S N   +  ++   C  G   + 
Sbjct: 390 TVTYNALINILVENRRIKYAFVVL-----NLMGRNGCSPNIVTYNEMIKGYCILGDPKKA 444

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             +  +M Q            +I   C SG    A R++ +MR  G  P   SY  ++ G
Sbjct: 445 MLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICG 504

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK      A+ L  E +  G  P+E TY  L++G C +  L+ A  +L+ M        
Sbjct: 505 FCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPN 564

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
            +  N+ +  L    N +    +   M++    P+V+T   +I+G CK G    AL++ N
Sbjct: 565 VQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFN 624

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            M+  + C P+ +T++++I  L   G+++EA NL  + + + G  P  +TY  ++     
Sbjct: 625 KMIE-QGCLPNLLTYSSLIRALGQEGKVEEAENLFAE-LERHGLIPDEITYVKMIEAYIM 682

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQL-DEAKRFWDDIV------WPS 416
             +VE A      M+  G      TY ++I GL     L D+      D+V      + +
Sbjct: 683 SGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSFGYQT 742

Query: 417 NIHDN-----------------YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCY 459
              D                   V  A++  L  +G+  EA   L  ++  G+ P+   Y
Sbjct: 743 TDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANELLGSMISQGLCPDQEAY 802

Query: 460 NVVIDGACKLSMKREAYQILREMRKNG 486
           N ++    ++     A  + + M   G
Sbjct: 803 NSLLCSLLRVRNVDLAMGVFKHMSTQG 829



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 118/414 (28%), Positives = 190/414 (45%), Gaps = 42/414 (10%)

Query: 97  EEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNH 156
            E +  N   +  ++++LC++G V +   I + + + +   + F    MI   CR     
Sbjct: 208 SEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLD 267

Query: 157 GASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLV 216
            A +V   M K G  P+ V+Y+++++GLC  G    A+ L+ E I  G LP+ HT     
Sbjct: 268 SALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHT----- 322

Query: 217 EGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQ 276
                                         C   + ALC +    +   + V M    C+
Sbjct: 323 ------------------------------CTGPIIALCDMGCYEDAWRLFVDMKNKGCE 352

Query: 277 PDVITLNTVINGFCKMGRIEEALKVLNDMVA-GKFCAPDAVTFTTIIFGLLNVGRIQEAL 335
           P+V T   +I+G C  G ++ A+ + + M   G F  P+ VT+  +I  L+   RI+ A 
Sbjct: 353 PNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVF--PNTVTYNALINILVENRRIKYAF 410

Query: 336 NLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG 395
            +L  +M + G SP IVTYN +++G   L   ++A  V N ML  G  A+  TY  +I G
Sbjct: 411 VVL-NLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKG 469

Query: 396 LCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN 455
            C+S     A R  D +       D + Y  +I G C+  K+  A     E+VD G+ PN
Sbjct: 470 YCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPN 529

Query: 456 IVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG-NRGNDF 508
            V Y  +IDG CK      A  +L  M+++G  P+  T+ +L  +HG  + N+F
Sbjct: 530 EVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVL--IHGLTKQNNF 581



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 124/490 (25%), Positives = 216/490 (44%), Gaps = 35/490 (7%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C L    +A  +  +M  RGH  N+V+Y T+I GYC +G    A ++ D MR  G  P+ 
Sbjct: 436 CILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDE 495

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
            +Y+ L+ G  +   +E A    F L+  M ++  L  N   +  L+D  C++  ++   
Sbjct: 496 WSYTELICGFCKISKMESA----FGLFNEMVDD-GLCPNEVTYTALIDGYCKDEKLDTAT 550

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
            + E M +            +I  L +     GA  +  VM + G+ P++V+Y +++ GL
Sbjct: 551 SLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGL 610

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM----LSKKD 240
           CK+G    A ++  + I+ G LP+  TY  L+  L  E  +E+A  +   +    L   +
Sbjct: 611 CKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDE 670

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI-EEAL 299
           +   ++   Y+    +        N L  M++  CQP + T   +I G      + ++ L
Sbjct: 671 ITYVKMIEAYI----MSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRL 726

Query: 300 KVLNDMVAG-----KFCAPDAVTFTTIIFGLLNVG---RIQEAL-------------NLL 338
             L D+V       +    DAV+  +     L+ G   ++Q AL             N L
Sbjct: 727 AALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANEL 786

Query: 339 YQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE 398
              M  +G  P    YN++L  L R+R V+ A  VF  M   G       Y  +I  LC+
Sbjct: 787 LGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALCQ 846

Query: 399 SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVC 458
            ++  EA+  +++++  +   D+ V A +I GL R G     + FL+ +      P+   
Sbjct: 847 LHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLRDGYKDLCMEFLHIMETRRYMPSFHI 906

Query: 459 YNVVIDGACK 468
           Y ++   A K
Sbjct: 907 YTILAREASK 916



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 73/153 (47%)

Query: 341 VMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN 400
           ++ Q G   G+  Y+A+L  L RL       + ++ ML  GV  +   Y  VI+ LC+  
Sbjct: 170 MLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDG 229

Query: 401 QLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYN 460
            + +A+     +       D + Y +MI G CR   +  A+    ++   G  PN V Y+
Sbjct: 230 NVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYS 289

Query: 461 VVIDGACKLSMKREAYQILREMRKNGLNPDAVT 493
            +I+G C      EA+ ++REM  +G+ P A T
Sbjct: 290 TLINGLCDSGRVNEAFDLIREMILHGILPTAHT 322


>gi|358346502|ref|XP_003637306.1| Pentatricopeptide repeat-containing protein, partial [Medicago
           truncatula]
 gi|355503241|gb|AES84444.1| Pentatricopeptide repeat-containing protein, partial [Medicago
           truncatula]
          Length = 603

 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 138/497 (27%), Positives = 226/497 (45%), Gaps = 49/497 (9%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++    + R+ EA ++  +M ++G VPN  +   +I      G ++ A  +F+EM   GV
Sbjct: 142 VESFSEVGRLKEAVEMVIEMHNQGLVPNTRTLNWIIKVTSEMGLVEYAELLFEEMCVRGV 201

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+S++Y V+V    +       N+L    W  +  E    V+NA F  ++     +GY 
Sbjct: 202 QPDSISYRVMVVMYCKI-----GNILEADKWLSVMLERGFVVDNATFTLIISRFSGKGYT 256

Query: 121 NEV---FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
                 FR   DM                                      GL P+L+++
Sbjct: 257 TRALWYFRRLVDM--------------------------------------GLEPNLINF 278

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKA-RKVLQFML 236
             ++ GLCK G   +A+++LEE +  G+ P+ +T+  L++GLC +   EKA R  L+ + 
Sbjct: 279 TCMIEGLCKRGSIKQAFEMLEEMVGKGWKPNVYTHTSLIDGLCKKGWTEKAFRLFLKLVR 338

Query: 237 SKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIE 296
           S+            +   C          +L  M +    P+  T  T+I+G CK G  E
Sbjct: 339 SENHKPNVLTYTAMISGYCREDKLNRAEMLLSRMKEQGLVPNTNTYTTLIDGHCKAGNFE 398

Query: 297 EALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
            A  ++N M +  F +P+  T+  I+ GL   GR+QEA  +L     Q G  P   TYN 
Sbjct: 399 RAYDLMNLMSSEGF-SPNLCTYNAIVNGLCKRGRVQEAYKMLEDGF-QNGLKPDKFTYNI 456

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416
           ++    +   + +A  +FN ML IG+  D  +Y  +I   C  N++ E++ F+++ V   
Sbjct: 457 LMSEHCKQENIRQALALFNKMLKIGIQPDIHSYTTLIAVFCRENRMKESEMFFEEAVRIG 516

Query: 417 NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAY 476
            I  N  Y +MI G CR G +  A+ F + L D G  P+ + Y  +I G CK S + EA 
Sbjct: 517 IIPTNKTYTSMICGYCREGNLTLAMKFFHRLSDHGCAPDSITYGAIISGLCKQSKRDEAR 576

Query: 477 QILREMRKNGLNPDAVT 493
            +   M + GL P  VT
Sbjct: 577 SLYDSMIEKGLVPCEVT 593



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 98/364 (26%), Positives = 172/364 (47%), Gaps = 4/364 (1%)

Query: 137 NEEFACG---HMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRA 193
           N E AC     M++S    GR   A  +V  M  +GL P+  + N I+    + G    A
Sbjct: 130 NSEKACEVMRCMVESFSEVGRLKEAVEMVIEMHNQGLVPNTRTLNWIIKVTSEMGLVEYA 189

Query: 194 YQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRA 253
             L EE    G  P   +Y+V+V   C   ++ +A K L  ML +  V       + +  
Sbjct: 190 ELLFEEMCVRGVQPDSISYRVMVVMYCKIGNILEADKWLSVMLERGFVVDNATFTLIISR 249

Query: 254 LCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAP 313
                  T  L     ++    +P++I    +I G CK G I++A ++L +MV GK   P
Sbjct: 250 FSGKGYTTRALWYFRRLVDMGLEPNLINFTCMIEGLCKRGSIKQAFEMLEEMV-GKGWKP 308

Query: 314 DAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEV 373
           +  T T++I GL   G  ++A  L  +++    + P ++TY A++ G  R  ++  A+ +
Sbjct: 309 NVYTHTSLIDGLCKKGWTEKAFRLFLKLVRSENHKPNVLTYTAMISGYCREDKLNRAEML 368

Query: 374 FNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR 433
            + M   G+V ++ TY  +IDG C++   + A    + +       +   Y A++ GLC+
Sbjct: 369 LSRMKEQGLVPNTNTYTTLIDGHCKAGNFERAYDLMNLMSSEGFSPNLCTYNAIVNGLCK 428

Query: 434 SGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVT 493
            G++ EA   L +   +G+ P+   YN+++   CK    R+A  +  +M K G+ PD  +
Sbjct: 429 RGRVQEAYKMLEDGFQNGLKPDKFTYNILMSEHCKQENIRQALALFNKMLKIGIQPDIHS 488

Query: 494 WRIL 497
           +  L
Sbjct: 489 YTTL 492



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 83/324 (25%), Positives = 141/324 (43%), Gaps = 42/324 (12%)

Query: 1   MDQLCGLSRVGEAHKLFFDM-KSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCG 59
           +D LC      +A +LF  + +S  H PNV++YT +I GYCR  +++ A  +   M+  G
Sbjct: 317 IDGLCKKGWTEKAFRLFLKLVRSENHKPNVLTYTAMISGYCREDKLNRAEMLLSRMKEQG 376

Query: 60  VLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGY 119
           ++PN+ TY+ L+ G  +  + ERA  LM      +   E  S N   +  +V+ LC+ G 
Sbjct: 377 LVPNTNTYTTLIDGHCKAGNFERAYDLM-----NLMSSEGFSPNLCTYNAIVNGLCKRGR 431

Query: 120 VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           V E +++ ED  Q     ++F    ++   C+      A  +   M K G+ P + SY +
Sbjct: 432 VQEAYKMLEDGFQNGLKPDKFTYNILMSEHCKQENIRQALALFNKMLKIGIQPDIHSYTT 491

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++   C+      +    EE ++ G +P+  TY  ++ G C E +L  A K    +    
Sbjct: 492 LIAVFCRENRMKESEMFFEEAVRIGIIPTNKTYTSMICGYCREGNLTLAMKFFHRLSDHG 551

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                                              C PD IT   +I+G CK  + +EA 
Sbjct: 552 -----------------------------------CAPDSITYGAIISGLCKQSKRDEAR 576

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIF 323
            + + M+  K   P  VT  T+ +
Sbjct: 577 SLYDSMIE-KGLVPCEVTRITLAY 599



 Score = 44.7 bits (104), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 21/84 (25%), Positives = 43/84 (51%)

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
           V   M++     G++ EAV  + E+ + G+ PN    N +I    ++ +   A  +  EM
Sbjct: 137 VMRCMVESFSEVGRLKEAVEMVIEMHNQGLVPNTRTLNWIIKVTSEMGLVEYAELLFEEM 196

Query: 483 RKNGLNPDAVTWRILDKLHGNRGN 506
              G+ PD++++R++  ++   GN
Sbjct: 197 CVRGVQPDSISYRVMVVMYCKIGN 220


>gi|357439843|ref|XP_003590199.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479247|gb|AES60450.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 834

 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 122/467 (26%), Positives = 234/467 (50%), Gaps = 7/467 (1%)

Query: 16  LFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVL 75
           LF  M+  G   N ++   LI+ YC   +++ A+ VF ++   G  P+ +TY+ L+RG+ 
Sbjct: 71  LFQRMELHGIQSNYITLNILINSYCHLRQINSAFSVFAKILKLGYQPDIITYTTLIRGLC 130

Query: 76  RTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKS 135
               V+ +        +R+  +  + +++ ++  L++ LC+ G      R+   +     
Sbjct: 131 LNGQVKES----LNFHDRLVSQ-GIKLDHVSYGTLINGLCKIGQTGPALRLLRKIEGEIC 185

Query: 136 VNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQ 195
             +      +ID LC+      A  +   M ++ + P++V+Y S+++G C  G   +A+ 
Sbjct: 186 RPDVVMYNTIIDGLCKDKLVRDAFDLYCEMFEKRVFPNVVTYTSLIYGFCIVGQLDKAFG 245

Query: 196 LLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALC 255
           LL E +     P+  T+  LV+GLC E  + +A+ ++  M+ +         N  +    
Sbjct: 246 LLNEMVLKNVNPNVCTFNTLVDGLCKEGKMREAKSLVAVMMKEGVGPDVFTYNALMDGYF 305

Query: 256 LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA 315
           L+K   +  NV   M Q     DV + + +I+G  KM  ++EA+ +   M   +   PD 
Sbjct: 306 LVKEAGKAKNVFNIMAQMGVTCDVHSYSVMISGLSKMKMLDEAMDLFEGM-RNENVIPDV 364

Query: 316 VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN 375
           V ++++I GL   GRI  AL  + + M  RG  P ++TY +++  L +  +V++A  +  
Sbjct: 365 VAYSSLIDGLCKSGRINSALKYVDE-MHDRGQPPNVITYTSLIDALCKSHQVDKAIALLK 423

Query: 376 CMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG 435
            +   G+ A+  TY I++DGLC+  +L +A++ + D++   +  D   Y+ MI GLC+  
Sbjct: 424 KIKDQGIQANMYTYNILVDGLCKDGRLTDAQKVFQDLLMKGHNVDVVTYSIMINGLCKES 483

Query: 436 KIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
              EA+  L ++ D G  P+ + Y  +I+   +  M  +A ++LREM
Sbjct: 484 LFDEALTLLSKMEDKGCVPDAIAYETIINAFFEKDMNDKAEKLLREM 530



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 111/395 (28%), Positives = 209/395 (52%), Gaps = 10/395 (2%)

Query: 107 FANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMR 166
           F  ++ SL +  +   V  + + M      +       +I+S C   + + A  V   + 
Sbjct: 52  FGKILGSLVKTKHYPIVIHLFQRMELHGIQSNYITLNILINSYCHLRQINSAFSVFAKIL 111

Query: 167 KRGLTPSLVSYNSIVHGLCKHGGCMRAY----QLLEEGIQFGYLPSEHTYKVLVEGLCGE 222
           K G  P +++Y +++ GLC +G    +     +L+ +GI+  ++    +Y  L+ GLC  
Sbjct: 112 KLGYQPDIITYTTLIRGLCLNGQVKESLNFHDRLVSQGIKLDHV----SYGTLINGLCKI 167

Query: 223 SDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITL 282
                A ++L+ +  +       + N  +  LC  K   +  ++   M + +  P+V+T 
Sbjct: 168 GQTGPALRLLRKIEGEICRPDVVMYNTIIDGLCKDKLVRDAFDLYCEMFEKRVFPNVVTY 227

Query: 283 NTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVM 342
            ++I GFC +G++++A  +LN+MV  K   P+  TF T++ GL   G+++EA +L+  VM
Sbjct: 228 TSLIYGFCIVGQLDKAFGLLNEMVL-KNVNPNVCTFNTLVDGLCKEGKMREAKSLV-AVM 285

Query: 343 PQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQL 402
            + G  P + TYNA++ G F ++   +AK VFN M  +GV  D  +Y+++I GL +   L
Sbjct: 286 MKEGVGPDVFTYNALMDGYFLVKEAGKAKNVFNIMAQMGVTCDVHSYSVMISGLSKMKML 345

Query: 403 DEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVV 462
           DEA   ++ +   + I D   Y+++I GLC+SG+I+ A+ ++ E+ D G  PN++ Y  +
Sbjct: 346 DEAMDLFEGMRNENVIPDVVAYSSLIDGLCKSGRINSALKYVDEMHDRGQPPNVITYTSL 405

Query: 463 IDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           ID  CK     +A  +L++++  G+  +  T+ IL
Sbjct: 406 IDALCKSHQVDKAIALLKKIKDQGIQANMYTYNIL 440



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 101/455 (22%), Positives = 204/455 (44%), Gaps = 40/455 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C L ++  A  +F  +   G+ P++++YTTLI G C  G++  +    D +   G+
Sbjct: 91  INSYCHLRQINSAFSVFAKILKLGYQPDIITYTTLIRGLCLNGQVKESLNFHDRLVSQGI 150

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             + ++Y  L+ G+ +      A  L+ K+     E E    +   +  ++D LC++  V
Sbjct: 151 KLDHVSYGTLINGLCKIGQTGPALRLLRKI-----EGEICRPDVVMYNTIIDGLCKDKLV 205

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            + F +  +M + +          +I   C  G+   A  ++  M  + + P++ ++N++
Sbjct: 206 RDAFDLYCEMFEKRVFPNVVTYTSLIYGFCIVGQLDKAFGLLNEMVLKNVNPNVCTFNTL 265

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           V GLCK G    A  L+   ++ G  P   TY  L++G     +  KA+ V   M     
Sbjct: 266 VDGLCKEGKMREAKSLVAVMMKEGVGPDVFTYNALMDGYFLVKEAGKAKNVFNIMAQMGV 325

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                  ++ +  L  +K   E +++   M      PDV+  +++I+G CK GRI  ALK
Sbjct: 326 TCDVHSYSVMISGLSKMKMLDEAMDLFEGMRNENVIPDVVAYSSLIDGLCKSGRINSALK 385

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ---------------- 344
            +++M   +   P+ +T+T++I  L    ++ +A+ LL ++  Q                
Sbjct: 386 YVDEM-HDRGQPPNVITYTSLIDALCKSHQVDKAIALLKKIKDQGIQANMYTYNILVDGL 444

Query: 345 ------------------RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
                             +G++  +VTY+ ++ GL +    +EA  + + M   G V D+
Sbjct: 445 CKDGRLTDAQKVFQDLLMKGHNVDVVTYSIMINGLCKESLFDEALTLLSKMEDKGCVPDA 504

Query: 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
             Y  +I+   E +  D+A++   +++   +  DN
Sbjct: 505 IAYETIINAFFEKDMNDKAEKLLREMIDCVDYKDN 539



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/257 (24%), Positives = 123/257 (47%), Gaps = 8/257 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           MD    +   G+A  +F  M   G   +V SY+ +I G  +   +D A  +F+ MR+  V
Sbjct: 301 MDGYFLVKEAGKAKNVFNIMAQMGVTCDVHSYSVMISGLSKMKMLDEAMDLFEGMRNENV 360

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P+ + YS L+ G+ ++  +  A   + ++ +R +       N   + +L+D+LC+   V
Sbjct: 361 IPDVVAYSSLIDGLCKSGRINSALKYVDEMHDRGQPP-----NVITYTSLIDALCKSHQV 415

Query: 121 NEVFRIAEDMP-QGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           ++   + + +  QG   N  +    ++D LC+ GR   A +V   +  +G    +V+Y+ 
Sbjct: 416 DKAIALLKKIKDQGIQANM-YTYNILVDGLCKDGRLTDAQKVFQDLLMKGHNVDVVTYSI 474

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           +++GLCK      A  LL +    G +P    Y+ ++     +   +KA K+L+ M+   
Sbjct: 475 MINGLCKESLFDEALTLLSKMEDKGCVPDAIAYETIINAFFEKDMNDKAEKLLREMIDCV 534

Query: 240 DV-DRTRICNIYLRALC 255
           D  D    C+ Y   +C
Sbjct: 535 DYKDNGDTCDQYDEFIC 551


>gi|297736854|emb|CBI26055.3| unnamed protein product [Vitis vinifera]
          Length = 653

 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 150/569 (26%), Positives = 245/569 (43%), Gaps = 79/569 (13%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC  +R+ EA +LF  ++    VP   +Y T+I GY   G+ D AY + +  +  G +P+
Sbjct: 65  LCKANRLDEAVELFEQLEQNRKVPCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKGSIPS 124

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            + Y+ ++  + + R VE A     +++E MK   D   N   +  L+D LCREG +N  
Sbjct: 125 VIAYNCILTCLGKKRRVEEA----LRIFEEMKR--DAVPNVPTYNILIDMLCREGKLNAA 178

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             I +DM +            MID LC++ +   A  +   M  +  TP+ V+++S++ G
Sbjct: 179 LEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDG 238

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGL--CGESD----------------- 224
           L K G    AY L E+ +  G++P    Y  L+     CG  +                 
Sbjct: 239 LGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPD 298

Query: 225 ----------------LEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLV 268
                            EK R + + + +   +   R  +I +  L       E   +  
Sbjct: 299 LTLINTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLANETYELFY 358

Query: 269 FMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL--- 325
            M +  C  D    N VI+GFCK G++ +A ++L +M   K   P  VT+ ++I GL   
Sbjct: 359 AMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKV-KGHPPTVVTYGSVIDGLAKI 417

Query: 326 -------------------LNV-------------GRIQEALNLLYQVMPQRGYSPGIVT 353
                              LNV             GRI EA  ++ ++M Q+G +P + T
Sbjct: 418 DRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELM-QKGLTPNVYT 476

Query: 354 YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413
           +N +L  L +   + EA   F  M  +    +  TY+I+I+GLC   + ++A  FW ++ 
Sbjct: 477 WNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQ 536

Query: 414 WPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKR 473
                 +   Y  MI GL ++G I EA         +G  P+   YN +I+G    +   
Sbjct: 537 KLGLKPNTITYTTMISGLAKAGNILEASGLFSRFKANGGIPDSASYNAMIEGLSSANKAM 596

Query: 474 EAYQILREMRKNGLNPDAVTWRI-LDKLH 501
           +AY +  E R  G N    T  + LD LH
Sbjct: 597 DAYALFEETRLKGCNIHTKTCVVLLDALH 625



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 111/435 (25%), Positives = 198/435 (45%), Gaps = 32/435 (7%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D+LC   ++ EA  +F  M  +   PN V++++LI G  + G +D AY ++++M  CG 
Sbjct: 201 IDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGH 260

Query: 61  LPNSLTYSVLVRGVLR-------------------TRDVERANVLM---FKLWERMKEEE 98
           +P ++ Y+ L+R   +                   + D+   N  M   FK  E  K   
Sbjct: 261 VPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRA 320

Query: 99  DLSVNNA--------AFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC 150
                NA        +++ L+  L + G  NE + +   M +   V +  A   +ID  C
Sbjct: 321 LFREINAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFC 380

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
           +SG+ + A +++  M+ +G  P++V+Y S++ GL K      AY L EE    G   +  
Sbjct: 381 KSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVV 440

Query: 211 TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM 270
            Y  L++G      +++A  +++ ++ K         N  L AL   +   E L     M
Sbjct: 441 VYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSM 500

Query: 271 LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR 330
              +C P+ IT + +ING C++ +  +A     +M       P+ +T+TT+I GL   G 
Sbjct: 501 KDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQKLGL-KPNTITYTTMISGLAKAGN 559

Query: 331 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYA 390
           I EA  L  +     G  P   +YNA++ GL    +  +A  +F      G    + T  
Sbjct: 560 ILEASGLFSRFKANGGI-PDSASYNAMIEGLSSANKAMDAYALFEETRLKGCNIHTKTCV 618

Query: 391 IVIDGLCESNQLDEA 405
           +++D L ++  L++A
Sbjct: 619 VLLDALHKAECLEQA 633



 Score = 43.1 bits (100), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 3/97 (3%)

Query: 4   LCGLSRVG---EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           + GL++ G   EA  LF   K+ G +P+  SY  +I G     +   AY +F+E R  G 
Sbjct: 551 ISGLAKAGNILEASGLFSRFKANGGIPDSASYNAMIEGLSSANKAMDAYALFEETRLKGC 610

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEE 97
             ++ T  VL+  + +   +E+A ++   L E  K +
Sbjct: 611 NIHTKTCVVLLDALHKAECLEQAAIVGAVLKETAKSQ 647


>gi|224079730|ref|XP_002305930.1| predicted protein [Populus trichocarpa]
 gi|222848894|gb|EEE86441.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 131/490 (26%), Positives = 227/490 (46%), Gaps = 42/490 (8%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C L RV     +       G  P +V++TTLI+G  + G+   A ++FD+M   G  P+
Sbjct: 20  FCQLQRVDLGFSVLAKGIKLGLQPTIVTFTTLINGLGKVGKFAQAVELFDDMVARGCQPD 79

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             TY+ ++ G+ +  +   A  L  K+     EE    +N   ++ L+ SLC+   VNE 
Sbjct: 80  DYTYTTIINGLCKIGETALAAGLFKKM-----EEAGCQLNVVTYSTLIHSLCKYRRVNEA 134

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             I   M         F    +I  LC   R   AS ++  M    + P++V++N +V  
Sbjct: 135 LDIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKEASALLNEMTSLNIMPNVVTFNVLVDT 194

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK G  + A  +L+   + G  P   TY  L+ G    +++ +ARK+   M++K     
Sbjct: 195 FCKEGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGYSMWTEVVEARKLFDVMITKG---- 250

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                                          C+PDV + + +ING+CK  RI+EA ++ N
Sbjct: 251 -------------------------------CKPDVFSYSILINGYCKAKRIDEAKQLFN 279

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           +M+  +   P+ V++ T+I GL  +GR++EA +L ++ M   G  P + TY  +L G  +
Sbjct: 280 EMIH-QGSTPNNVSYNTLIHGLCQLGRLREAQDL-FKNMHTNGNLPNLYTYAILLDGFCK 337

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
              + +A  +F  M    +  +   Y I+++ +C+S  L +A+  + ++       +  +
Sbjct: 338 QGYLGKAFRLFRAMQSTYLKPNLVMYNILVNAMCKSGNLKDARELFSELFVIGLQPNVQI 397

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y  +I GLC+ G + EA+     + D G  P+   YNV+I G  +   +  A  ++ EMR
Sbjct: 398 YTTIINGLCKEGLLDEALEAFRNMEDDGCPPDEFSYNVIIRGFLQHKDESRAVHLIGEMR 457

Query: 484 KNGLNPDAVT 493
             G   DA T
Sbjct: 458 DRGFITDAGT 467



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 122/479 (25%), Positives = 223/479 (46%), Gaps = 44/479 (9%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M+  G  PN  +   LI+ +C+   +D+ + V  +    G+ P  +T++ L+ G+ +   
Sbjct: 1   MELAGLSPNTCTLNILINCFCQLQRVDLGFSVLAKGIKLGLQPTIVTFTTLINGLGKVGK 60

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
             +A  L   +  R  + +D +     +  +++ LC+ G       + + M +       
Sbjct: 61  FAQAVELFDDMVARGCQPDDYT-----YTTIINGLCKIGETALAAGLFKKMEEAGCQLNV 115

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
                +I SLC+  R + A  +   M+ + ++P++ +Y S++ GLC       A  LL E
Sbjct: 116 VTYSTLIHSLCKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKEASALLNE 175

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
                 +P+  T+ VLV+  C E  +  A  VL+ M                        
Sbjct: 176 MTSLNIMPNVVTFNVLVDTFCKEGKVLAAEGVLKTM------------------------ 211

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
            TE+            +PDV+T N+++ G+     + EA K+ + M+  K C PD  +++
Sbjct: 212 -TEM----------GVEPDVVTYNSLMYGYSMWTEVVEARKLFDVMIT-KGCKPDVFSYS 259

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
            +I G     RI EA   L+  M  +G +P  V+YN ++ GL +L R+ EA+++F  M  
Sbjct: 260 ILINGYCKAKRIDEA-KQLFNEMIHQGSTPNNVSYNTLIHGLCQLGRLREAQDLFKNMHT 318

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV-YAAMIKGLCRSGKIH 438
            G + +  TYAI++DG C+   L +A R +  +   + +  N V Y  ++  +C+SG + 
Sbjct: 319 NGNLPNLYTYAILLDGFCKQGYLGKAFRLFRAM-QSTYLKPNLVMYNILVNAMCKSGNLK 377

Query: 439 EAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           +A     EL   G+ PN+  Y  +I+G CK  +  EA +  R M  +G  PD  ++ ++
Sbjct: 378 DARELFSELFVIGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEDDGCPPDEFSYNVI 436



 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 98/362 (27%), Positives = 186/362 (51%), Gaps = 2/362 (0%)

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
           +I+  C+  R      V+    K GL P++V++ ++++GL K G   +A +L ++ +  G
Sbjct: 16  LINCFCQLQRVDLGFSVLAKGIKLGLQPTIVTFTTLINGLGKVGKFAQAVELFDDMVARG 75

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL 264
             P ++TY  ++ GLC   +   A  + + M            +  + +LC  +   E L
Sbjct: 76  CQPDDYTYTTIINGLCKIGETALAAGLFKKMEEAGCQLNVVTYSTLIHSLCKYRRVNEAL 135

Query: 265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 324
           ++  +M      P + T  ++I G C   R +EA  +LN+M +     P+ VTF  ++  
Sbjct: 136 DIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKEASALLNEMTSLNI-MPNVVTFNVLVDT 194

Query: 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 384
               G++  A  +L + M + G  P +VTYN+++ G      V EA+++F+ M+  G   
Sbjct: 195 FCKEGKVLAAEGVL-KTMTEMGVEPDVVTYNSLMYGYSMWTEVVEARKLFDVMITKGCKP 253

Query: 385 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFL 444
           D  +Y+I+I+G C++ ++DEAK+ +++++   +  +N  Y  +I GLC+ G++ EA    
Sbjct: 254 DVFSYSILINGYCKAKRIDEAKQLFNEMIHQGSTPNNVSYNTLIHGLCQLGRLREAQDLF 313

Query: 445 YELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNR 504
             +  +G  PN+  Y +++DG CK     +A+++ R M+   L P+ V + IL       
Sbjct: 314 KNMHTNGNLPNLYTYAILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYNILVNAMCKS 373

Query: 505 GN 506
           GN
Sbjct: 374 GN 375



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 115/235 (48%), Gaps = 5/235 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C   +V  A  +   M   G  P+VV+Y +L++GY    E+  A K+FD M   G 
Sbjct: 192 VDTFCKEGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGYSMWTEVVEARKLFDVMITKGC 251

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+  +YS+L+ G  + + ++ A     +L+  M  +   + NN ++  L+  LC+ G +
Sbjct: 252 KPDVFSYSILINGYCKAKRIDEAK----QLFNEMIHQGS-TPNNVSYNTLIHGLCQLGRL 306

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E   + ++M    ++   +    ++D  C+ G    A R+   M+   L P+LV YN +
Sbjct: 307 REAQDLFKNMHTNGNLPNLYTYAILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYNIL 366

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM 235
           V+ +CK G    A +L  E    G  P+   Y  ++ GLC E  L++A +  + M
Sbjct: 367 VNAMCKSGNLKDARELFSELFVIGLQPNVQIYTTIINGLCKEGLLDEALEAFRNM 421



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 55/93 (59%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ +C    + +A +LF ++   G  PNV  YTT+I+G C+ G +D A + F  M   G 
Sbjct: 367 VNAMCKSGNLKDARELFSELFVIGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEDDGC 426

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWER 93
            P+  +Y+V++RG L+ +D  RA  L+ ++ +R
Sbjct: 427 PPDEFSYNVIIRGFLQHKDESRAVHLIGEMRDR 459


>gi|302757245|ref|XP_002962046.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
 gi|300170705|gb|EFJ37306.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
          Length = 465

 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 121/472 (25%), Positives = 235/472 (49%), Gaps = 15/472 (3%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M   G  PN V++  L++G+ + G      ++ + M    + PN ++Y+ L+ G+ +   
Sbjct: 1   MDRTGCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARDIQPNVVSYNGLLEGLCKLER 60

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
              A  L+  +  R       + +   ++ L+   C+ G V E   + +++       + 
Sbjct: 61  WHEAEELVRDMISRGGRS---TPDMVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDA 117

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
                ++ SLC+S R   A  ++  M + G  P+L+++N+++ G C+      A  LL++
Sbjct: 118 LMYTKVVASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQK 177

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
               G      TY  L++GLC    L++A ++L+ M +          + ++  LC    
Sbjct: 178 MAASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGK 237

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
             +   VL  M  +   P+V+T NT+++G CK G+I+ AL+++  M +   C  + V ++
Sbjct: 238 VLDAHQVLEQMRDSHHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYS 297

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
           T++ GL  +GR QEA +++ + M + G  P +VTY++++ GL +  ++EEA E    M  
Sbjct: 298 TVVDGLCKLGRTQEARSVM-EAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAM 356

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV--------WPSNIHDNYVYAAMIKGL 431
            G   ++ TY  ++ GLC   +L EA+R  +++          P ++     Y A+I GL
Sbjct: 357 EGCKPNAVTYCSLVHGLCSCGRLAEAERMVEEMSSGGGGGHHCPPSVS---TYNALIGGL 413

Query: 432 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           C++G+I +A+ F   +   G  P+ V Y+ +++G  +     +A  IL E+R
Sbjct: 414 CKAGRIDDALKFFQRMRSQGCDPDGVSYSTIVEGLARSGRALQAEMILSEVR 465



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 116/419 (27%), Positives = 221/419 (52%), Gaps = 13/419 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRG--HVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHC 58
           ++ LC L R  EA +L  DM SRG    P++V+Y+TL+ GYC+ G+++ + ++  E+   
Sbjct: 52  LEGLCKLERWHEAEELVRDMISRGGRSTPDMVTYSTLLSGYCKAGKVEESRELLKEVISR 111

Query: 59  GVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREG 118
           G+ P++L Y+ +V  + ++     A +                     F  L+   CRE 
Sbjct: 112 GLRPDALMYTKVVASLCKS-----ARLGEALELLEEMIRAGCCPTLITFNTLISGCCREK 166

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
            +     + + M       +      ++D LC++GR   A +++  M+  G  P +V+Y+
Sbjct: 167 NLEMADSLLQKMAASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYS 226

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
           S V+GLCK G  + A+Q+LE+     + P+  TY  +++GLC    ++ A ++++ M S 
Sbjct: 227 SFVYGLCKSGKVLDAHQVLEQMRDSHHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASS 286

Query: 239 KDVDRTRIC-NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
                  +  +  +  LC +    E  +V+  M +  C+PDV+T ++++NG CK G+IEE
Sbjct: 287 DGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEE 346

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGY----SPGIVT 353
           A++ + +M A + C P+AVT+ +++ GL + GR+ EA  ++ ++    G      P + T
Sbjct: 347 AVEAVREM-AMEGCKPNAVTYCSLVHGLCSCGRLAEAERMVEEMSSGGGGGHHCPPSVST 405

Query: 354 YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI 412
           YNA++ GL +  R+++A + F  M   G   D  +Y+ +++GL  S +  +A+    ++
Sbjct: 406 YNALIGGLCKAGRIDDALKFFQRMRSQGCDPDGVSYSTIVEGLARSGRALQAEMILSEV 464



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 129/453 (28%), Positives = 214/453 (47%), Gaps = 19/453 (4%)

Query: 55  MRHCGVLPNSLTYSVLVRGVL---RTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLV 111
           M   G  PNS+T++ LV G     R  D ER       L E M    D+  N  ++  L+
Sbjct: 1   MDRTGCPPNSVTFNALVNGFSKQGRPGDCER-------LLETMAAR-DIQPNVVSYNGLL 52

Query: 112 DSLCREGYVNEVFRIAEDMPQ--GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRG 169
           + LC+    +E   +  DM    G+S  +      ++   C++G+   +  ++  +  RG
Sbjct: 53  EGLCKLERWHEAEELVRDMISRGGRSTPDMVTYSTLLSGYCKAGKVEESRELLKEVISRG 112

Query: 170 LTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKAR 229
           L P  + Y  +V  LCK      A +LLEE I+ G  P+  T+  L+ G C E +LE A 
Sbjct: 113 LRPDALMYTKVVASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMAD 172

Query: 230 KVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGF 289
            +LQ M +          N  +  LC      E   +L  M  + C PDV+  ++ + G 
Sbjct: 173 SLLQKMAASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGL 232

Query: 290 CKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSP 349
           CK G++ +A +VL  M       P+ VT+ TI+ GL   G+I  AL ++ Q+    G   
Sbjct: 233 CKSGKVLDAHQVLEQMRDSHH-DPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGL 291

Query: 350 GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFW 409
            +V Y+ V+ GL +L R +EA+ V   M   G   D  TY+ +++GLC++ +++EA    
Sbjct: 292 NVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAV 351

Query: 410 DDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYEL-----VDSGVTPNIVCYNVVID 464
            ++       +   Y +++ GLC  G++ EA   + E+           P++  YN +I 
Sbjct: 352 REMAMEGCKPNAVTYCSLVHGLCSCGRLAEAERMVEEMSSGGGGGHHCPPSVSTYNALIG 411

Query: 465 GACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           G CK     +A +  + MR  G +PD V++  +
Sbjct: 412 GLCKAGRIDDALKFFQRMRSQGCDPDGVSYSTI 444



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 74/243 (30%), Positives = 126/243 (51%), Gaps = 3/243 (1%)

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA-GKFCAPDAVTF 318
           P +   +L  M     QP+V++ N ++ G CK+ R  EA +++ DM++ G    PD VT+
Sbjct: 26  PGDCERLLETMAARDIQPNVVSYNGLLEGLCKLERWHEAEELVRDMISRGGRSTPDMVTY 85

Query: 319 TTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCML 378
           +T++ G    G+++E+  LL +V+  RG  P  + Y  V+  L +  R+ EA E+   M+
Sbjct: 86  STLLSGYCKAGKVEESRELLKEVI-SRGLRPDALMYTKVVASLCKSARLGEALELLEEMI 144

Query: 379 GIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIH 438
             G      T+  +I G C    L+ A      +       D   Y  ++ GLC++G++ 
Sbjct: 145 RAGCCPTLITFNTLISGCCREKNLEMADSLLQKMAASGVKADVVTYNTLMDGLCKAGRLQ 204

Query: 439 EAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWR-IL 497
           EA   L  +  SG  P++V Y+  + G CK     +A+Q+L +MR +  +P+ VT+  IL
Sbjct: 205 EAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLDAHQVLEQMRDSHHDPNVVTYNTIL 264

Query: 498 DKL 500
           D L
Sbjct: 265 DGL 267



 Score = 42.4 bits (98), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 31/53 (58%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMR 56
           LC   R+ +A K F  M+S+G  P+ VSY+T++ G  R+G    A  +  E+R
Sbjct: 413 LCKAGRIDDALKFFQRMRSQGCDPDGVSYSTIVEGLARSGRALQAEMILSEVR 465


>gi|224107129|ref|XP_002314384.1| predicted protein [Populus trichocarpa]
 gi|222863424|gb|EEF00555.1| predicted protein [Populus trichocarpa]
          Length = 764

 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 132/497 (26%), Positives = 238/497 (47%), Gaps = 15/497 (3%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           +  +A ++F +MK R  +PN+ +Y  +I   C+ G ++ A+KV D M+  G+ PN  T +
Sbjct: 251 KTDKALRIFEEMK-RDAMPNLPTYNIIIGMLCKAGNVEAAFKVRDAMKEAGLFPNVRTIN 309

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
           +++  + + + ++ A      ++E M + +  S + A F +L+D L ++G V++ +RI E
Sbjct: 310 IMIDRLCKAQKLDEA----CSIFEGM-DYKVCSPDGATFCSLIDGLGKQGRVDDAYRIYE 364

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
            M     +        +I +  +  R     ++   M + G +P L+  N+ +  + K G
Sbjct: 365 RMLDADQIPNVVVYTSLIRNFFKCDRKEDGHKMYKEMMRSGCSPDLMLLNTYMDCVFKAG 424

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD---VDRTR 245
              +   L EE    G+LP   +Y +L+  L        AR+  +   + KD   V  TR
Sbjct: 425 ETEKGRALFEEIKARGFLPDTRSYSILIHSLVKAG---FARETYELYYAMKDQGCVLDTR 481

Query: 246 ICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM 305
             N  +   C      +   +L  M      P V+T  +V++G  K+ R++EA  +  + 
Sbjct: 482 AYNTVIDGFCKSGKVNKAYQLLEEMKTMGHHPTVVTYGSVVDGLAKIDRLDEAYMLFEEA 541

Query: 306 VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLR 365
            +      + V ++++I G   VGR+ EA  L+ + M Q+G +P + T+N +L GL +  
Sbjct: 542 KSNGI-ELNQVIYSSLIDGFGKVGRVDEAY-LVMEEMMQKGLTPNVYTWNCLLDGLVKAE 599

Query: 366 RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYA 425
            + EA   F  M  +    +  TY I+I+GLC+  + ++A  FW ++       +   Y 
Sbjct: 600 EINEALVCFQSMKDLKCTPNQITYCILINGLCKVRKFNKAFVFWQEMQKQGLKPNTITYT 659

Query: 426 AMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN 485
           AMI GL +SG + +A         SG  P+   YN +I+G    +   +AYQ+  E R  
Sbjct: 660 AMISGLAKSGNVAQASSLFERFRASGGIPDSASYNAMIEGLSIANRALDAYQLFEETRLK 719

Query: 486 GLNPDAVTW-RILDKLH 501
           G +    T   +LD LH
Sbjct: 720 GCSIHTKTCVALLDALH 736



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 135/503 (26%), Positives = 238/503 (47%), Gaps = 11/503 (2%)

Query: 6   GLSRVGEAHK---LFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
            LS VGE+ +   LF  M+  G+  NV   TTLI  + R G +D A  + DEM+      
Sbjct: 70  ALSEVGESDRMLALFNQMQELGYEVNVHLLTTLIRVFSREGRVDAALSLLDEMKSNTFDA 129

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           + + Y+V +    +   V+ A    +K +  MK    L  ++  + +++  LC+   ++E
Sbjct: 130 DIVLYNVCIDCFGKVGKVDMA----WKFFHEMK-ANGLVPDDVTYTSMMGVLCKANRLDE 184

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
              I E M Q + V   +A   MI     +G+   A  ++   R +G  PS+V+YN I+ 
Sbjct: 185 AVEIFEQMEQNRQVPCAYAYNTMIMGYGSAGKFDEAYSLLERQRAKGCIPSVVAYNCILT 244

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
            L K G   +A ++ EE ++   +P+  TY +++  LC   ++E A KV   M       
Sbjct: 245 CLGKKGKTDKALRIFEE-MKRDAMPNLPTYNIIIGMLCKAGNVEAAFKVRDAMKEAGLFP 303

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
             R  NI +  LC  +   E  ++   M    C PD  T  ++I+G  K GR+++A ++ 
Sbjct: 304 NVRTINIMIDRLCKAQKLDEACSIFEGMDYKVCSPDGATFCSLIDGLGKQGRVDDAYRIY 363

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
             M+      P+ V +T++I       R ++  + +Y+ M + G SP ++  N  +  +F
Sbjct: 364 ERMLDAD-QIPNVVVYTSLIRNFFKCDRKEDG-HKMYKEMMRSGCSPDLMLLNTYMDCVF 421

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
           +    E+ + +F  +   G + D+ +Y+I+I  L ++    E    +  +     + D  
Sbjct: 422 KAGETEKGRALFEEIKARGFLPDTRSYSILIHSLVKAGFARETYELYYAMKDQGCVLDTR 481

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
            Y  +I G C+SGK+++A   L E+   G  P +V Y  V+DG  K+    EAY +  E 
Sbjct: 482 AYNTVIDGFCKSGKVNKAYQLLEEMKTMGHHPTVVTYGSVVDGLAKIDRLDEAYMLFEEA 541

Query: 483 RKNGLNPDAVTWRILDKLHGNRG 505
           + NG+  + V +  L    G  G
Sbjct: 542 KSNGIELNQVIYSSLIDGFGKVG 564



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 126/508 (24%), Positives = 238/508 (46%), Gaps = 12/508 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M  LC  +R+ EA ++F  M+    VP   +Y T+I GY   G+ D AY + +  R  G 
Sbjct: 173 MGVLCKANRLDEAVEIFEQMEQNRQVPCAYAYNTMIMGYGSAGKFDEAYSLLERQRAKGC 232

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P+ + Y+ ++  + +    ++A     +++E MK   D   N   +  ++  LC+ G V
Sbjct: 233 IPSVVAYNCILTCLGKKGKTDKA----LRIFEEMKR--DAMPNLPTYNIIIGMLCKAGNV 286

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
              F++ + M +            MID LC++ +   A  +   M  +  +P   ++ S+
Sbjct: 287 EAAFKVRDAMKEAGLFPNVRTINIMIDRLCKAQKLDEACSIFEGMDYKVCSPDGATFCSL 346

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GL K G    AY++ E  +    +P+   Y  L+         E   K+ + M+    
Sbjct: 347 IDGLGKQGRVDDAYRIYERMLDADQIPNVVVYTSLIRNFFKCDRKEDGHKMYKEMMRSGC 406

Query: 241 VDRTRICNIYLRALCLIK-NPTELLNVLVFMLQTQ-CQPDVITLNTVINGFCKMGRIEEA 298
                + N Y+   C+ K   TE    L   ++ +   PD  + + +I+   K G   E 
Sbjct: 407 SPDLMLLNTYMD--CVFKAGETEKGRALFEEIKARGFLPDTRSYSILIHSLVKAGFARET 464

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
            ++   M   + C  D   + T+I G    G++ +A  LL + M   G+ P +VTY +V+
Sbjct: 465 YELYYAM-KDQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEE-MKTMGHHPTVVTYGSVV 522

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
            GL ++ R++EA  +F      G+  +   Y+ +IDG  +  ++DEA    ++++     
Sbjct: 523 DGLAKIDRLDEAYMLFEEAKSNGIELNQVIYSSLIDGFGKVGRVDEAYLVMEEMMQKGLT 582

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI 478
            + Y +  ++ GL ++ +I+EA+     + D   TPN + Y ++I+G CK+    +A+  
Sbjct: 583 PNVYTWNCLLDGLVKAEEINEALVCFQSMKDLKCTPNQITYCILINGLCKVRKFNKAFVF 642

Query: 479 LREMRKNGLNPDAVTWRILDKLHGNRGN 506
            +EM+K GL P+ +T+  +       GN
Sbjct: 643 WQEMQKQGLKPNTITYTAMISGLAKSGN 670



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 88/386 (22%), Positives = 164/386 (42%), Gaps = 38/386 (9%)

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
           + C  ++ S  +S +   A  ++ +MR     P+  +Y +++  L + G   R   L  +
Sbjct: 27  YTCVELVASCVKSRKLIEAFDLLQMMRHFKFRPAFSAYTTLIGALSEVGESDRMLALFNQ 86

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK---KDVDRTRIC--------- 247
             + GY  + H    L+     E  ++ A  +L  M S     D+    +C         
Sbjct: 87  MQELGYEVNVHLLTTLIRVFSREGRVDAALSLLDEMKSNTFDADIVLYNVCIDCFGKVGK 146

Query: 248 -----------------------NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNT 284
                                     +  LC      E + +   M Q +  P     NT
Sbjct: 147 VDMAWKFFHEMKANGLVPDDVTYTSMMGVLCKANRLDEAVEIFEQMEQNRQVPCAYAYNT 206

Query: 285 VINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ 344
           +I G+   G+ +EA  +L    A K C P  V +  I+  L   G+  +AL +  ++  +
Sbjct: 207 MIMGYGSAGKFDEAYSLLERQRA-KGCIPSVVAYNCILTCLGKKGKTDKALRIFEEM--K 263

Query: 345 RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 404
           R   P + TYN ++  L +   VE A +V + M   G+  +  T  I+ID LC++ +LDE
Sbjct: 264 RDAMPNLPTYNIIIGMLCKAGNVEAAFKVRDAMKEAGLFPNVRTINIMIDRLCKAQKLDE 323

Query: 405 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
           A   ++ + +     D   + ++I GL + G++ +A      ++D+   PN+V Y  +I 
Sbjct: 324 ACSIFEGMDYKVCSPDGATFCSLIDGLGKQGRVDDAYRIYERMLDADQIPNVVVYTSLIR 383

Query: 465 GACKLSMKREAYQILREMRKNGLNPD 490
              K   K + +++ +EM ++G +PD
Sbjct: 384 NFFKCDRKEDGHKMYKEMMRSGCSPD 409



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 110/228 (48%), Gaps = 5/228 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D L  + R+ EA+ LF + KS G   N V Y++LI G+ + G +D AY V +EM   G+
Sbjct: 522 VDGLAKIDRLDEAYMLFEEAKSNGIELNQVIYSSLIDGFGKVGRVDEAYLVMEEMMQKGL 581

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN  T++ L+ G+++  ++  A V     ++ MK+ +  + N   +  L++ LC+    
Sbjct: 582 TPNVYTWNCLLDGLVKAEEINEALVC----FQSMKDLK-CTPNQITYCILINGLCKVRKF 636

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           N+ F   ++M +            MI  L +SG    AS +    R  G  P   SYN++
Sbjct: 637 NKAFVFWQEMQKQGLKPNTITYTAMISGLAKSGNVAQASSLFERFRASGGIPDSASYNAM 696

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKA 228
           + GL      + AYQL EE    G      T   L++ L     LE+A
Sbjct: 697 IEGLSIANRALDAYQLFEETRLKGCSIHTKTCVALLDALHKAECLEQA 744



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 113/245 (46%), Gaps = 3/245 (1%)

Query: 262 ELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTI 321
           E  ++L  M   + +P      T+I    ++G  +  L + N M    +   +    TT+
Sbjct: 44  EAFDLLQMMRHFKFRPAFSAYTTLIGALSEVGESDRMLALFNQMQELGY-EVNVHLLTTL 102

Query: 322 IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG 381
           I      GR+  AL+LL + M    +   IV YN  +    ++ +V+ A + F+ M   G
Sbjct: 103 IRVFSREGRVDAALSLLDE-MKSNTFDADIVLYNVCIDCFGKVGKVDMAWKFFHEMKANG 161

Query: 382 VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAV 441
           +V D  TY  ++  LC++N+LDEA   ++ +     +   Y Y  MI G   +GK  EA 
Sbjct: 162 LVPDDVTYTSMMGVLCKANRLDEAVEIFEQMEQNRQVPCAYAYNTMIMGYGSAGKFDEAY 221

Query: 442 HFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLH 501
             L      G  P++V YN ++    K     +A +I  EM+++ + P+  T+ I+  + 
Sbjct: 222 SLLERQRAKGCIPSVVAYNCILTCLGKKGKTDKALRIFEEMKRDAM-PNLPTYNIIIGML 280

Query: 502 GNRGN 506
              GN
Sbjct: 281 CKAGN 285



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 90/168 (53%), Gaps = 7/168 (4%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D L     + EA   F  MK     PN ++Y  LI+G C+  + + A+  + EM+  G+
Sbjct: 592 LDGLVKAEEINEALVCFQSMKDLKCTPNQITYCILINGLCKVRKFNKAFVFWQEMQKQGL 651

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN++TY+ ++ G+ ++ +V +A+     L+ER +    +  ++A++  +++ L      
Sbjct: 652 KPNTITYTAMISGLAKSGNVAQAS----SLFERFRASGGIP-DSASYNAMIEGLSIANRA 706

Query: 121 NEVFRIAEDMP-QGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRK 167
            + +++ E+   +G S++ +  C  ++D+L ++     A+ V  V+R+
Sbjct: 707 LDAYQLFEETRLKGCSIHTK-TCVALLDALHKAECLEQAAIVGAVLRE 753


>gi|218200911|gb|EEC83338.1| hypothetical protein OsI_28730 [Oryza sativa Indica Group]
 gi|258644730|dbj|BAI39975.1| putative fertility restorer homologue [Oryza sativa Indica Group]
          Length = 918

 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 135/499 (27%), Positives = 238/499 (47%), Gaps = 7/499 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC    V +A  +   +      P+  +YT++I G+CR  ++D A +VF++M   G 
Sbjct: 222 INALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGC 281

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN++TYS L+ G+  +  V  A    F L   M     L   +     ++ +LC  G  
Sbjct: 282 EPNTVTYSTLINGLCDSGRVNEA----FDLIREMILHGILPTAHTCTGPII-ALCDMGCY 336

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            + +R+  DM         +    +I  LC SG    A  + + M + G+ P+ V+YN++
Sbjct: 337 EDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGILKVAIGLFHRMSRDGVFPNTVTYNAL 396

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++ L ++     A+ +L    + G  P+  TY  +++G C   D +KA  V+  ML +  
Sbjct: 397 INILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGH 456

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                  N  ++  C   N T  L +L  M    C+PD  +   +I GFCK+ ++E A  
Sbjct: 457 SANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFG 516

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           + N+MV    C P+ VT+T +I G     ++  A +LL + M + G  P + TYN ++ G
Sbjct: 517 LFNEMVDDGLC-PNEVTYTALIDGYCKDEKLDTATSLL-EHMKRSGCRPNVQTYNVLIHG 574

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L +      A+E+   M+  G+  +  TY  +IDGLC++     A   ++ ++    + +
Sbjct: 575 LTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPN 634

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              Y+++I+ L + GK+ EA +   EL   G+ P+ + Y  +I+          A+  L 
Sbjct: 635 LLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLG 694

Query: 481 EMRKNGLNPDAVTWRILDK 499
            M K G  P   T+ +L K
Sbjct: 695 RMIKAGCQPTLWTYGVLIK 713



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 129/505 (25%), Positives = 228/505 (45%), Gaps = 45/505 (8%)

Query: 4   LCGLSRVGEAHKL---FFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           L  LSR+G    +   +  M S G  PN++ Y  +I+  C+ G +  A  +  ++    +
Sbjct: 187 LIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEM 246

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P++ TY+ ++ G  R  D++ A     +++ +M +E     N   ++ L++ LC  G V
Sbjct: 247 SPDTFTYTSMILGHCRKHDLDSA----LQVFNQMAKE-GCEPNTVTYSTLINGLCDSGRV 301

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           NE F +  +M     +     C   I +LC  G    A R+   M+ +G  P++ +Y ++
Sbjct: 302 NEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTAL 361

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GLC  G    A  L     + G  P+  TY  L+  L                     
Sbjct: 362 ISGLCVSGILKVAIGLFHRMSRDGVFPNTVTYNALINIL--------------------- 400

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           V+  RI   ++              VL  M +  C P+++T N +I G+C +G  ++A+ 
Sbjct: 401 VENRRIKYAFV--------------VLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAML 446

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           V+N+M+     A + VT+ TII G  + G    AL +L  +M   G  P   +Y  ++ G
Sbjct: 447 VMNNMLQRGHSA-NLVTYNTIIKGYCDSGNTTSALRIL-DLMRDGGCKPDEWSYTELICG 504

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
             ++ ++E A  +FN M+  G+  +  TY  +IDG C+  +LD A    + +       +
Sbjct: 505 FCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPN 564

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              Y  +I GL +      A      +++ G+ PN+V Y  +IDG CK      A ++  
Sbjct: 565 VQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFN 624

Query: 481 EMRKNGLNPDAVTWRILDKLHGNRG 505
           +M + G  P+ +T+  L +  G  G
Sbjct: 625 KMIEQGCLPNLLTYSSLIRALGQEG 649



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 128/507 (25%), Positives = 221/507 (43%), Gaps = 31/507 (6%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC +    +A +LF DMK++G  PNV +YT LI G C +G + VA  +F  M   GV PN
Sbjct: 330 LCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGILKVAIGLFHRMSRDGVFPN 389

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           ++TY+ L+  ++  R ++ A V++      +      S N   +  ++   C  G   + 
Sbjct: 390 TVTYNALINILVENRRIKYAFVVL-----NLMGRNGCSPNIVTYNEMIKGYCILGDPKKA 444

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             +  +M Q            +I   C SG    A R++ +MR  G  P   SY  ++ G
Sbjct: 445 MLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICG 504

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK      A+ L  E +  G  P+E TY  L++G C +  L+ A  +L+ M        
Sbjct: 505 FCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPN 564

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
            +  N+ +  L    N +    +   M++    P+V+T   +I+G CK G    AL++ N
Sbjct: 565 VQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFN 624

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            M+  + C P+ +T++++I  L   G+++EA NL  + + + G  P  +TY  ++     
Sbjct: 625 KMIE-QGCLPNLLTYSSLIRALGQEGKVEEAENLFAE-LERHGLIPDEITYVKMIEAYIM 682

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQL-DEAKRFWDDIV------WPS 416
             +VE A      M+  G      TY ++I GL     L D+      D+V      + +
Sbjct: 683 SGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSFGYQT 742

Query: 417 NIHDN-----------------YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCY 459
              D                   V  A++  L  +G+  EA   L  ++  G+ P+   Y
Sbjct: 743 TDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANELLGSMISQGLCPDQEAY 802

Query: 460 NVVIDGACKLSMKREAYQILREMRKNG 486
           N ++    ++     A  + + M   G
Sbjct: 803 NSLLCSLLRVRNVDLAMGVFKHMSTQG 829



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 118/414 (28%), Positives = 190/414 (45%), Gaps = 42/414 (10%)

Query: 97  EEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNH 156
            E +  N   +  ++++LC++G V +   I + + + +   + F    MI   CR     
Sbjct: 208 SEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLD 267

Query: 157 GASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLV 216
            A +V   M K G  P+ V+Y+++++GLC  G    A+ L+ E I  G LP+ HT     
Sbjct: 268 SALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHT----- 322

Query: 217 EGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQ 276
                                         C   + ALC +    +   + V M    C+
Sbjct: 323 ------------------------------CTGPIIALCDMGCYEDAWRLFVDMKNKGCE 352

Query: 277 PDVITLNTVINGFCKMGRIEEALKVLNDMVA-GKFCAPDAVTFTTIIFGLLNVGRIQEAL 335
           P+V T   +I+G C  G ++ A+ + + M   G F  P+ VT+  +I  L+   RI+ A 
Sbjct: 353 PNVYTYTALISGLCVSGILKVAIGLFHRMSRDGVF--PNTVTYNALINILVENRRIKYAF 410

Query: 336 NLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG 395
            +L  +M + G SP IVTYN +++G   L   ++A  V N ML  G  A+  TY  +I G
Sbjct: 411 VVL-NLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKG 469

Query: 396 LCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN 455
            C+S     A R  D +       D + Y  +I G C+  K+  A     E+VD G+ PN
Sbjct: 470 YCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPN 529

Query: 456 IVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG-NRGNDF 508
            V Y  +IDG CK      A  +L  M+++G  P+  T+ +L  +HG  + N+F
Sbjct: 530 EVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVL--IHGLTKQNNF 581



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 124/490 (25%), Positives = 216/490 (44%), Gaps = 35/490 (7%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C L    +A  +  +M  RGH  N+V+Y T+I GYC +G    A ++ D MR  G  P+ 
Sbjct: 436 CILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDE 495

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
            +Y+ L+ G  +   +E A    F L+  M ++  L  N   +  L+D  C++  ++   
Sbjct: 496 WSYTELICGFCKISKMESA----FGLFNEMVDD-GLCPNEVTYTALIDGYCKDEKLDTAT 550

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
            + E M +            +I  L +     GA  +  VM + G+ P++V+Y +++ GL
Sbjct: 551 SLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGL 610

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM----LSKKD 240
           CK+G    A ++  + I+ G LP+  TY  L+  L  E  +E+A  +   +    L   +
Sbjct: 611 CKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDE 670

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI-EEAL 299
           +   ++   Y+    +        N L  M++  CQP + T   +I G      + ++ L
Sbjct: 671 ITYVKMIEAYI----MSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRL 726

Query: 300 KVLNDMVAG-----KFCAPDAVTFTTIIFGLLNVG---RIQEAL-------------NLL 338
             L D+V       +    DAV+  +     L+ G   ++Q AL             N L
Sbjct: 727 AALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANEL 786

Query: 339 YQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE 398
              M  +G  P    YN++L  L R+R V+ A  VF  M   G       Y  +I  LC+
Sbjct: 787 LGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALCQ 846

Query: 399 SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVC 458
            ++  EA+  +++++  +   D+ V A +I GL R G     + FL+ +      P+   
Sbjct: 847 LHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLRDGYKDLCMEFLHIMETRRYMPSFHI 906

Query: 459 YNVVIDGACK 468
           Y ++   A K
Sbjct: 907 YTILAREASK 916



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 73/153 (47%)

Query: 341 VMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN 400
           ++ Q G   G+  Y+A+L  L RL       + ++ ML  GV  +   Y  VI+ LC+  
Sbjct: 170 MLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDG 229

Query: 401 QLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYN 460
            + +A+     +       D + Y +MI G CR   +  A+    ++   G  PN V Y+
Sbjct: 230 NVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYS 289

Query: 461 VVIDGACKLSMKREAYQILREMRKNGLNPDAVT 493
            +I+G C      EA+ ++REM  +G+ P A T
Sbjct: 290 TLINGLCDSGRVNEAFDLIREMILHGILPTAHT 322


>gi|224135613|ref|XP_002322117.1| predicted protein [Populus trichocarpa]
 gi|222869113|gb|EEF06244.1| predicted protein [Populus trichocarpa]
          Length = 854

 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 131/518 (25%), Positives = 243/518 (46%), Gaps = 44/518 (8%)

Query: 17  FFDMKSR-GHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVL 75
           +F+M  R G  PNVV+++TLI  YC+ G +D A+ +FD M   GV P+ + YS+L+ G+ 
Sbjct: 294 YFNMVVRIGPKPNVVTFSTLIDAYCKEGNLDKAFVLFDVMAGNGVTPDLIVYSILIDGLF 353

Query: 76  RTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKS 135
           +   +E    L+      +  ++ + ++   F++ +D+  + G +  V +I + M     
Sbjct: 354 KAGRLEDGQRLLL-----VALDKGIKLDVVGFSSAMDAYVKIGDLGRVIQIYKRMLNEGI 408

Query: 136 VNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQ 195
                +C  +I   C++GR   A  +   + K G  PS+++Y++++ G CK G     + 
Sbjct: 409 SPNVVSCSILIKGFCQNGRILEACGLFVQILKLGFEPSILTYSALIAGFCKSGNLRDGFY 468

Query: 196 LLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALC 255
           L E+ I+    P    Y VL+ GLC +  +  A +     +++         N  L + C
Sbjct: 469 LYEDMIKKRCEPDTIVYSVLINGLCKQGLVGDALRFFFQAVNRGLSPNVFTLNTLLDSFC 528

Query: 256 LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA 315
            +K     + V   M     + D +T   +I G  + GR++EAL +   M+   F  PD 
Sbjct: 529 RLKCIVGAMKVYYLMGMLNIKADTVTYTILIKGAAQFGRVDEALMLFFQMLKKDF-KPDV 587

Query: 316 VTFTTIIFGLLNV-----------------------------------GRIQEALNLLYQ 340
           +T+ T+I GL  +                                   G ++ AL L   
Sbjct: 588 ITYCTLIDGLCKLKKSSAGLCIFDFMCKNAVAPDIAIYNVLINMHSREGHLEAALGLFVH 647

Query: 341 VMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN 400
           V+ +RG  P + T+N ++      +R+++A ++F  M    +  ++ T+ I+ID  C   
Sbjct: 648 VV-ERGPKPDVFTFNTMICCYCNFKRLDDAVQLFAKMTSEQLRPNAITFTILIDAFCREG 706

Query: 401 QLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY-ELVDSGVTPNIVCY 459
           ++D+A   +  ++      +   Y+ +I G  +S  + E+   LY E++++ + PNIV Y
Sbjct: 707 RMDDAMLMFSKMLEEGPEPNLVTYSCLIHGYFKSQSMMESGLKLYNEMLENNIAPNIVSY 766

Query: 460 NVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           +++IDG CK  + +EA    R      L PD + + IL
Sbjct: 767 SILIDGLCKRGLMKEASCAFRCALDKHLLPDVIAYTIL 804



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 112/460 (24%), Positives = 207/460 (45%), Gaps = 45/460 (9%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           MD    +  +G   +++  M + G  PNVVS + LI G+C+ G +  A  +F ++   G 
Sbjct: 384 MDAYVKIGDLGRVIQIYKRMLNEGISPNVVSCSILIKGFCQNGRILEACGLFVQILKLGF 443

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ LTYS L+ G  ++ ++       F L+E M ++     +   ++ L++ LC++G V
Sbjct: 444 EPSILTYSALIAGFCKSGNLRDG----FYLYEDMIKKR-CEPDTIVYSVLINGLCKQGLV 498

Query: 121 NEVFRIA-EDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
            +  R   + + +G S N  F    ++DS CR     GA +V Y+M    +    V+Y  
Sbjct: 499 GDALRFFFQAVNRGLSPNV-FTLNTLLDSFCRLKCIVGAMKVYYLMGMLNIKADTVTYTI 557

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++ G  + G    A  L  + ++  + P   TY  L++GLC          +  FM    
Sbjct: 558 LIKGAAQFGRVDEALMLFFQMLKKDFKPDVITYCTLIDGLCKLKKSSAGLCIFDFMCKNA 617

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                 I N+ +       +    L + V +++   +PDV T NT+I  +C   R+++A+
Sbjct: 618 VAPDIAIYNVLINMHSREGHLEAALGLFVHVVERGPKPDVFTFNTMICCYCNFKRLDDAV 677

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           ++   M + +   P+A+TFT +I      GR+ +A+ L++  M + G  P +VTY+ ++ 
Sbjct: 678 QLFAKMTSEQL-RPNAITFTILIDAFCREGRMDDAM-LMFSKMLEEGPEPNLVTYSCLIH 735

Query: 360 GLFRLRRV------------------------------------EEAKEVFNCMLGIGVV 383
           G F+ + +                                    +EA   F C L   ++
Sbjct: 736 GYFKSQSMMESGLKLYNEMLENNIAPNIVSYSILIDGLCKRGLMKEASCAFRCALDKHLL 795

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
            D   Y I+I G C+  +L EA   +D+++      D ++
Sbjct: 796 PDVIAYTILIRGYCKVGRLTEAMMLYDNMLLNRLTPDRFL 835



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 117/525 (22%), Positives = 214/525 (40%), Gaps = 80/525 (15%)

Query: 17  FFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLR 76
           F D+ S  H    V Y  LI  YCR G  D +  +F  +   G+  +     +L+  ++ 
Sbjct: 158 FCDLDSTNHS---VVYGFLIESYCRKGMFDKSVDIFMHVCVKGIFVSPNVVYLLLGSLID 214

Query: 77  TRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSV 136
           +  VE       +L   M+E+       + +  +++    +G V    R  + + QG   
Sbjct: 215 SHCVEVIVDKYGELCSAMREQP-----FSVYEFVMNRFMNKGEVEMGLRFHKALVQGGFG 269

Query: 137 NEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQL 196
            +   C  ++  +        A     ++ + G  P++V++++++   CK G   +A+ L
Sbjct: 270 LDIITCNKILKGIWMQNDIGVADDYFNMVVRIGPKPNVVTFSTLIDAYCKEGNLDKAFVL 329

Query: 197 LEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK-----------------K 239
            +     G  P    Y +L++GL     LE  +++L   L K                 K
Sbjct: 330 FDVMAGNGVTPDLIVYSILIDGLFKAGRLEDGQRLLLVALDKGIKLDVVGFSSAMDAYVK 389

Query: 240 DVDRTRI------------------CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVIT 281
             D  R+                  C+I ++  C      E   + V +L+   +P ++T
Sbjct: 390 IGDLGRVIQIYKRMLNEGISPNVVSCSILIKGFCQNGRILEACGLFVQILKLGFEPSILT 449

Query: 282 LNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQV 341
            + +I GFCK G + +   +  DM+  K C PD + ++ +I GL   G + +AL   +Q 
Sbjct: 450 YSALIAGFCKSGNLRDGFYLYEDMIK-KRCEPDTIVYSVLINGLCKQGLVGDALRFFFQA 508

Query: 342 MPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ 401
           +  RG SP + T N +L    RL+ +  A +V+  M  + + AD+ TY I          
Sbjct: 509 V-NRGLSPNVFTLNTLLDSFCRLKCIVGAMKVYYLMGMLNIKADTVTYTI---------- 557

Query: 402 LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNV 461
                                    +IKG  + G++ EA+   ++++     P+++ Y  
Sbjct: 558 -------------------------LIKGAAQFGRVDEALMLFFQMLKKDFKPDVITYCT 592

Query: 462 VIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           +IDG CKL        I   M KN + PD   + +L  +H   G+
Sbjct: 593 LIDGLCKLKKSSAGLCIFDFMCKNAVAPDIAIYNVLINMHSREGH 637


>gi|225433790|ref|XP_002269080.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Vitis vinifera]
          Length = 1045

 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 135/525 (25%), Positives = 246/525 (46%), Gaps = 68/525 (12%)

Query: 4   LCGLSR---VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           LCG  R   +G   ++   M + G  P+   + +LIH YCR+G+   AYK+  +M  CG 
Sbjct: 341 LCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGC 400

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMF--KLWERM-----------------------K 95
            P  + Y++L+ G+     +   +VL    K +  M                       K
Sbjct: 401 QPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGK 460

Query: 96  EEEDLSV-----------NNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGH 144
            E+  S+           + + ++ ++  LC    V+  F + E+M     V + F    
Sbjct: 461 FEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTI 520

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
           +IDS C+ G    A +    M + G  P++V+Y +++H   K      A +L E  +  G
Sbjct: 521 LIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEG 580

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL 264
            +P+  TY  L++G C    +EKA                  C IY R    ++   ++ 
Sbjct: 581 CIPNVVTYTALIDGHCKSGQIEKA------------------CQIYAR----MRGNADIP 618

Query: 265 NVLVFMLQTQCQ---PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTI 321
           +V ++          P++ T   +++G CK  +++EA  +L D+++ + C P+ + +  +
Sbjct: 619 DVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLL-DVMSVEGCEPNHIVYDAL 677

Query: 322 IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG 381
           I G   VG++ EA  +++  M +RGY P + TY++++  LF+ +R++ A +V + ML   
Sbjct: 678 IDGFCKVGKLDEA-QMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENS 736

Query: 382 VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV-YAAMIKGLCRSGKIHEA 440
              +   Y  +IDGLC+  + DEA R    ++     H N V Y AMI G  ++GK+ + 
Sbjct: 737 CAPNVIIYTEMIDGLCKVGKTDEAYRLM-SMMEEKGCHPNVVTYTAMIDGFGKAGKVDKC 795

Query: 441 VHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN 485
           +  + ++   G  PN V Y V+I+  C   +  +A+Q+L EM++ 
Sbjct: 796 LELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQT 840



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 132/498 (26%), Positives = 236/498 (47%), Gaps = 37/498 (7%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC  S+V  A  LF +MKS   VP+V +YT LI  +C+ G +  A K FDEM   G  PN
Sbjct: 490 LCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPN 549

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY+ L+   L+ R +  AN    +L+E M  E  +  N   +  L+D  C+ G + + 
Sbjct: 550 VVTYTALIHAYLKARKMSSAN----ELFEMMLSEGCIP-NVVTYTALIDGHCKSGQIEKA 604

Query: 124 FRIAEDMPQGKSVNEE----------------FACGHMIDSLCRSGRNHGASRVVYVMRK 167
            +I   M     + +                 F  G ++D LC++ +   A  ++ VM  
Sbjct: 605 CQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSV 664

Query: 168 RGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEK 227
            G  P+ + Y++++ G CK G    A  +  +  + GY P+ +TY  L++ L  +  L+ 
Sbjct: 665 EGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDL 724

Query: 228 ARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVIN 287
           A KVL  ML         I    +  LC +    E   ++  M +  C P+V+T   +I+
Sbjct: 725 ALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMID 784

Query: 288 GFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGY 347
           GF K G++++ L+++  M A K CAP+ VT+  +I      G + +A  LL + M Q  +
Sbjct: 785 GFGKAGKVDKCLELMRQMGA-KGCAPNFVTYRVLINHCCAAGLLDDAHQLLDE-MKQTYW 842

Query: 348 SPGIVTYNAVLRGLFR-----LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQL 402
              +  Y  V+ G  R     L  ++E  E     + + ++     Y I+ID  C++ +L
Sbjct: 843 PKHMAGYRKVIEGFNREFIISLGLLDEIAE----NVAVPIIP---AYRILIDSFCKAGRL 895

Query: 403 DEAKRFWDDIVWPSNIH--DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYN 460
           + A     ++   ++    D  +Y+++I+ L  + K+ +A     +++  G  P +  + 
Sbjct: 896 ELALELHKEMSSCTSYSAADKDLYSSLIESLSLASKVDKAFELYADMIKRGGIPELSIFF 955

Query: 461 VVIDGACKLSMKREAYQI 478
            ++ G  +++   EA Q+
Sbjct: 956 YLVKGLIRINRWEEALQL 973



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 128/529 (24%), Positives = 230/529 (43%), Gaps = 54/529 (10%)

Query: 35  LIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKL---- 90
           LI   CR G  +VA +    ++  G  P+ LTY+ LVR  L    ++ A ++  ++    
Sbjct: 203 LIRKCCRNGLWNVALEELGRLKDLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMSDSG 262

Query: 91  --------------------WER---MKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIA 127
                               W     + E+E+  ++   +  ++  LC      E     
Sbjct: 263 FNMDGYTLGCFVHLLCKAGRWREALALIEKEEFKLDTVIYTQMISGLCEASLFEEAMDFL 322

Query: 128 EDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKH 187
             M     +        ++    R  +     R++ +M   G  PS   +NS++H  C+ 
Sbjct: 323 SRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRS 382

Query: 188 GGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESD------LEKARKVLQFMLSKKDV 241
           G    AY+LL++    G  P    Y +L+ G+CG         LE A K    ML    V
Sbjct: 383 GDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVV 442

Query: 242 -DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
            ++  + N+  R LC      +  +++  M+     PD  T + VI   C   +++ A  
Sbjct: 443 LNKVNVSNL-ARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFL 501

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +  +M +     PD  T+T +I     VG +Q+A    +  M + G +P +VTY A++  
Sbjct: 502 LFEEMKSNHV-VPDVFTYTILIDSFCKVGLLQQARK-WFDEMVRDGCAPNVVTYTALIHA 559

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
             + R++  A E+F  ML  G + +  TY  +IDG C+S Q+++A + +  +   ++I D
Sbjct: 560 YLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPD 619

Query: 421 N----------------YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
                            + Y A++ GLC++ K+ EA   L  +   G  PN + Y+ +ID
Sbjct: 620 VDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALID 679

Query: 465 GACKLSMKREAYQILREMRKNGLNPDAVTW-RILDKLHGNRGNDFGLRI 512
           G CK+    EA  +  +M + G  P+  T+  ++D+L  ++  D  L++
Sbjct: 680 GFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKV 728



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 127/500 (25%), Positives = 234/500 (46%), Gaps = 31/500 (6%)

Query: 2   DQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVL 61
           ++L  L  +  A K + +M     V N V+ + L    C  G+ + AY +  EM   G +
Sbjct: 418 EKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFI 477

Query: 62  PNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVN 121
           P++ TYS ++  +     V+ A    F L+E MK    +  +   +  L+DS C+ G + 
Sbjct: 478 PDTSTYSKVIGLLCNASKVDNA----FLLFEEMKSNH-VVPDVFTYTILIDSFCKVGLLQ 532

Query: 122 EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
           +  +  ++M +            +I +  ++ +   A+ +  +M   G  P++V+Y +++
Sbjct: 533 QARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALI 592

Query: 182 HGLCKHGGCMRAYQLLEE--------------GIQFGYL--PSEHTYKVLVEGLCGESDL 225
            G CK G   +A Q+                  I  G +  P+  TY  LV+GLC    +
Sbjct: 593 DGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKV 652

Query: 226 EKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTV 285
           ++AR +L  M  +       + +  +   C +    E   V   M +    P+V T +++
Sbjct: 653 KEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSL 712

Query: 286 INGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQR 345
           I+   K  R++ ALKVL+ M+    CAP+ + +T +I GL  VG+  EA  L+  +M ++
Sbjct: 713 IDRLFKDKRLDLALKVLSRMLENS-CAPNVIIYTEMIDGLCKVGKTDEAYRLM-SMMEEK 770

Query: 346 GYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA 405
           G  P +VTY A++ G  +  +V++  E+   M   G   +  TY ++I+  C +  LD+A
Sbjct: 771 GCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDA 830

Query: 406 KRFWDDI---VWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVV 462
            +  D++    WP ++     Y  +I+G  R   I  ++  L E+ ++   P I  Y ++
Sbjct: 831 HQLLDEMKQTYWPKHMAG---YRKVIEGFNREFII--SLGLLDEIAENVAVPIIPAYRIL 885

Query: 463 IDGACKLSMKREAYQILREM 482
           ID  CK      A ++ +EM
Sbjct: 886 IDSFCKAGRLELALELHKEM 905



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 105/425 (24%), Positives = 192/425 (45%), Gaps = 68/425 (16%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP------ 62
           ++  A++LF  M S G +PNVV+YT LI G+C++G+++ A +++  MR    +P      
Sbjct: 565 KMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYF 624

Query: 63  ----------NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVD 112
                     N  TY  LV G+ +   V+ A  L+      +   E    N+  +  L+D
Sbjct: 625 KIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLL-----DVMSVEGCEPNHIVYDALID 679

Query: 113 SLCREGYVNE---VFRIAEDMPQGKSVNE-------------------------EFACG- 143
             C+ G ++E   VF    +   G +V                           E +C  
Sbjct: 680 GFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAP 739

Query: 144 ------HMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLL 197
                  MID LC+ G+   A R++ +M ++G  P++V+Y +++ G  K G   +  +L+
Sbjct: 740 NVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELM 799

Query: 198 EEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVL----QFMLSKKDVDRTRICNIYLRA 253
            +    G  P+  TY+VL+   C    L+ A ++L    Q    K      ++   + R 
Sbjct: 800 RQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNRE 859

Query: 254 LCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA-GKFCA 312
             +       L +L  + +    P +     +I+ FCK GR+E AL++  +M +   + A
Sbjct: 860 FIIS------LGLLDEIAENVAVPIIPAYRILIDSFCKAGRLELALELHKEMSSCTSYSA 913

Query: 313 PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKE 372
            D   ++++I  L    ++ +A  L Y  M +RG  P +  +  +++GL R+ R EEA +
Sbjct: 914 ADKDLYSSLIESLSLASKVDKAFEL-YADMIKRGGIPELSIFFYLVKGLIRINRWEEALQ 972

Query: 373 VFNCM 377
           + +C+
Sbjct: 973 LSDCI 977



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 65/260 (25%), Positives = 117/260 (45%), Gaps = 37/260 (14%)

Query: 1    MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
            +D LC + +  EA++L   M+ +G  PNVV+YT +I G+ + G++D   ++  +M   G 
Sbjct: 748  IDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGC 807

Query: 61   LPNSLTYSVLVRGVLRTRDVERANVLMFKL----W-----------ERMKEE-------- 97
             PN +TY VL+        ++ A+ L+ ++    W           E    E        
Sbjct: 808  APNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNREFIISLGLL 867

Query: 98   EDLSVNNA-----AFANLVDSLCREGYVNEVFRIAEDMPQ--GKSVNEEFACGHMIDSLC 150
            ++++ N A     A+  L+DS C+ G +     + ++M      S  ++     +I+SL 
Sbjct: 868  DEIAENVAVPIIPAYRILIDSFCKAGRLELALELHKEMSSCTSYSAADKDLYSSLIESLS 927

Query: 151  RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLE-------EGIQF 203
             + +   A  +   M KRG  P L  +  +V GL +      A QL +       + ++ 
Sbjct: 928  LASKVDKAFELYADMIKRGGIPELSIFFYLVKGLIRINRWEEALQLSDCICQMMVDFVRE 987

Query: 204  GYLPSEHTYKVLVEGLCGES 223
            G+L S H Y+ L   LC  +
Sbjct: 988  GFLGSSHDYEFLNWTLCSTT 1007


>gi|242069921|ref|XP_002450237.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
 gi|241936080|gb|EES09225.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
          Length = 757

 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 148/543 (27%), Positives = 248/543 (45%), Gaps = 49/543 (9%)

Query: 4   LCGLSRVGEAHKLFFDMKSRG---HVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
            C   R  EA +L   M   G   H PNVV+YTT+I G C+   +D A  VF  M   GV
Sbjct: 174 FCNEKRAEEALELLSMMADDGDGSHTPNVVTYTTVIDGLCKAQMVDRAKGVFQHMIDKGV 233

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN+ TY+ L+ G L     +     + ++ + M     L  +   +A L+D LC+ G  
Sbjct: 234 RPNNHTYTCLIHGYLSIGKWKE----VVQMLQEMSTH-GLQPDCYIYAVLLDYLCKNGRC 288

Query: 121 NEVFRIAE----------------------------------DMPQGKSVNEEFACGHMI 146
            E   I +                                  D+  G  V+ +    +++
Sbjct: 289 TEARNIFDSVIRKGIKPNVTIYGILLHGYATEGSLSEMHSFLDLMVGNGVSPDHHIFNIM 348

Query: 147 DSLCRSGRNHGASRVVYV---MRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQF 203
              C   +       +++   MR++ L+P++V+Y +++  LCK G    A     + I  
Sbjct: 349 --FCAYAKKAMIDEAMHIFDKMRQQRLSPNIVTYGALIDALCKLGRVDDAVLKFNQMIDE 406

Query: 204 GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTEL 263
           G  P    +  LV GLC     EKA ++   +L +     T   N  +  LC      E 
Sbjct: 407 GMTPDIFVFSSLVYGLCTVDKWEKAEELFFEVLDQGIRLDTVFFNTLMCNLCREGRVMEA 466

Query: 264 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF 323
             ++  ML+   +PDVI+ NT+++G C  GRI+EA K+L D++      PD VT+ T++ 
Sbjct: 467 QRLIDLMLRVGVRPDVISYNTLVDGHCLTGRIDEAAKLL-DVIVSIGLKPDKVTYNTLLH 525

Query: 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 383
           G     RI +A +L ++ M  +G +P +VTYN +L GLF+  R  EAKE++  M+     
Sbjct: 526 GYCKARRIDDAYSL-FREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRTQ 584

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
            +  TY I+I+GLC++N +DEA + +  +       D +    MI  L + G+  +A+  
Sbjct: 585 MNIYTYNIIINGLCKNNFVDEAFKMFHSLCSKDLQLDIFTANIMIGALLKGGRKEDAMDL 644

Query: 444 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGN 503
              +   G+ P++  Y ++ +   K     E  ++   M +NG  P++     L +   +
Sbjct: 645 FATISAYGLVPDVETYCLIAENLIKEGSLEELDELFSAMEENGTAPNSRMLNALVRWLLH 704

Query: 504 RGN 506
           RG+
Sbjct: 705 RGD 707



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 134/547 (24%), Positives = 237/547 (43%), Gaps = 51/547 (9%)

Query: 4   LCGLSRVGEAHKLF-FDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVF-DEMRHCGVL 61
            C + R+      F   +K+   V + V ++ L+ G C    +D A  +    M   G  
Sbjct: 102 FCRMGRLKHGFAAFGLILKTGWRVNDTVIFSQLLKGLCDAKRVDEATDILLRRMPEFGCT 161

Query: 62  PNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLS--VNNAAFANLVDSLCREGY 119
           P+  +YS+L++G    +  E A     +L   M ++ D S   N   +  ++D LC+   
Sbjct: 162 PDVFSYSILLKGFCNEKRAEEA----LELLSMMADDGDGSHTPNVVTYTTVIDGLCKAQM 217

Query: 120 VNEVFRIAEDMPQG--KSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
           V+    + + M     +  N  + C  +I      G+     +++  M   GL P    Y
Sbjct: 218 VDRAKGVFQHMIDKGVRPNNHTYTC--LIHGYLSIGKWKEVVQMLQEMSTHGLQPDCYIY 275

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
             ++  LCK+G C  A  + +  I+ G  P+   Y +L+ G   E  L +    L  M+ 
Sbjct: 276 AVLLDYLCKNGRCTEARNIFDSVIRKGIKPNVTIYGILLHGYATEGSLSEMHSFLDLMVG 335

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
                   I NI   A        E +++   M Q +  P+++T   +I+  CK+GR+++
Sbjct: 336 NGVSPDHHIFNIMFCAYAKKAMIDEAMHIFDKMRQQRLSPNIVTYGALIDALCKLGRVDD 395

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           A+   N M+  +   PD   F+++++GL  V + ++A  L ++V+ Q G     V +N +
Sbjct: 396 AVLKFNQMI-DEGMTPDIFVFSSLVYGLCTVDKWEKAEELFFEVLDQ-GIRLDTVFFNTL 453

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 417
           +  L R  RV EA+ + + ML +GV  D  +Y  ++DG C + ++DEA +  D IV    
Sbjct: 454 MCNLCREGRVMEAQRLIDLMLRVGVRPDVISYNTLVDGHCLTGRIDEAAKLLDVIVSIGL 513

Query: 418 IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTP----------------------- 454
             D   Y  ++ G C++ +I +A     E++  G+TP                       
Sbjct: 514 KPDKVTYNTLLHGYCKARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKE 573

Query: 455 ------------NIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL--DKL 500
                       NI  YN++I+G CK +   EA+++   +    L  D  T  I+    L
Sbjct: 574 LYLSMINSRTQMNIYTYNIIINGLCKNNFVDEAFKMFHSLCSKDLQLDIFTANIMIGALL 633

Query: 501 HGNRGND 507
            G R  D
Sbjct: 634 KGGRKED 640



 Score =  168 bits (425), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 131/506 (25%), Positives = 237/506 (46%), Gaps = 24/506 (4%)

Query: 10  VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCR---TGEMDVAYKVFDEM-RHCG--VLPN 63
           + +A KLF +M +     +V ++  L+    R   +   ++   +F+ M R C   V P+
Sbjct: 32  LNDALKLFDEMLTHARPASVRAFNQLLTAVSRARCSSASELVVSLFNRMIRECSIKVAPS 91

Query: 64  SLTYSVLVRGVLRTRDVER---ANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           S TY++L+    R   ++    A  L+ K   R+ +          F+ L+  LC    V
Sbjct: 92  SFTYTILIGCFCRMGRLKHGFAAFGLILKTGWRVND-------TVIFSQLLKGLCDAKRV 144

Query: 121 NEVFRIA-EDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRG---LTPSLVS 176
           +E   I    MP+     + F+   ++   C   R   A  ++ +M   G    TP++V+
Sbjct: 145 DEATDILLRRMPEFGCTPDVFSYSILLKGFCNEKRAEEALELLSMMADDGDGSHTPNVVT 204

Query: 177 YNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFML 236
           Y +++ GLCK     RA  + +  I  G  P+ HTY  L+ G       ++  ++LQ M 
Sbjct: 205 YTTVIDGLCKAQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYLSIGKWKEVVQMLQEMS 264

Query: 237 SKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIE 296
           +        I  + L  LC     TE  N+   +++   +P+V     +++G+   G + 
Sbjct: 265 THGLQPDCYIYAVLLDYLCKNGRCTEARNIFDSVIRKGIKPNVTIYGILLHGYATEGSLS 324

Query: 297 EALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
           E    L D++ G   +PD   F  +         I EA+++ +  M Q+  SP IVTY A
Sbjct: 325 EMHSFL-DLMVGNGVSPDHHIFNIMFCAYAKKAMIDEAMHI-FDKMRQQRLSPNIVTYGA 382

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416
           ++  L +L RV++A   FN M+  G+  D   ++ ++ GLC  ++ ++A+  + +++   
Sbjct: 383 LIDALCKLGRVDDAVLKFNQMIDEGMTPDIFVFSSLVYGLCTVDKWEKAEELFFEVLDQG 442

Query: 417 NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAY 476
              D   +  ++  LCR G++ EA   +  ++  GV P+++ YN ++DG C      EA 
Sbjct: 443 IRLDTVFFNTLMCNLCREGRVMEAQRLIDLMLRVGVRPDVISYNTLVDGHCLTGRIDEAA 502

Query: 477 QILREMRKNGLNPDAVTWRILDKLHG 502
           ++L  +   GL PD VT+  L  LHG
Sbjct: 503 KLLDVIVSIGLKPDKVTYNTL--LHG 526



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 105/447 (23%), Positives = 204/447 (45%), Gaps = 7/447 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   R  EA  +F  +  +G  PNV  Y  L+HGY   G +   +   D M   GV
Sbjct: 279 LDYLCKNGRCTEARNIFDSVIRKGIKPNVTIYGILLHGYATEGSLSEMHSFLDLMVGNGV 338

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+   ++++     +   ++ A      ++++M+++  LS N   +  L+D+LC+ G V
Sbjct: 339 SPDHHIFNIMFCAYAKKAMIDEA----MHIFDKMRQQR-LSPNIVTYGALIDALCKLGRV 393

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           ++       M       + F    ++  LC   +   A  + + +  +G+    V +N++
Sbjct: 394 DDAVLKFNQMIDEGMTPDIFVFSSLVYGLCTVDKWEKAEELFFEVLDQGIRLDTVFFNTL 453

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +  LC+ G  M A +L++  ++ G  P   +Y  LV+G C    +++A K+L  ++S   
Sbjct: 454 MCNLCREGRVMEAQRLIDLMLRVGVRPDVISYNTLVDGHCLTGRIDEAAKLLDVIVSIGL 513

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                  N  L   C  +   +  ++   ML     PDV+T NT+++G  + GR  EA +
Sbjct: 514 KPDKVTYNTLLHGYCKARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKE 573

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +   M+  +    +  T+  II GL     + EA  + +  +  +     I T N ++  
Sbjct: 574 LYLSMINSR-TQMNIYTYNIIINGLCKNNFVDEAFKMFHS-LCSKDLQLDIFTANIMIGA 631

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L +  R E+A ++F  +   G+V D  TY ++ + L +   L+E    +  +       +
Sbjct: 632 LLKGGRKEDAMDLFATISAYGLVPDVETYCLIAENLIKEGSLEELDELFSAMEENGTAPN 691

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYEL 447
           + +  A+++ L   G I+ A  +L +L
Sbjct: 692 SRMLNALVRWLLHRGDINRAGAYLSKL 718



 Score = 47.8 bits (112), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 59/124 (47%), Gaps = 9/124 (7%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           R  +A  LF  + + G VP+V +Y  +     + G ++   ++F  M   G  PNS   +
Sbjct: 637 RKEDAMDLFATISAYGLVPDVETYCLIAENLIKEGSLEELDELFSAMEENGTAPNSRMLN 696

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
            LVR +L   D+ RA   + KL     +E++ S+  +  + L+    R  Y     ++A+
Sbjct: 697 ALVRWLLHRGDINRAGAYLSKL-----DEKNFSLEASTTSMLISIYSRGEYQ----QLAK 747

Query: 129 DMPQ 132
            +P+
Sbjct: 748 SLPE 751


>gi|449511869|ref|XP_004164076.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 134/466 (28%), Positives = 228/466 (48%), Gaps = 17/466 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +  LC   RV  AHKLF +M ++G  P+ V+YTT++   C+ G++D A ++    +    
Sbjct: 186 LKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDARELAGRFK---- 241

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+   Y+ L+ G+ +   +E A  L   L E M    D +V   +++ +++SLC  G V
Sbjct: 242 -PSVPVYNALIDGMCKEGRIEVAIKL---LGEMMDNGVDPNV--VSYSCIINSLCVSGNV 295

Query: 121 NEVFRI-AEDMPQGKSVN-EEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
              F + A+   +G   N   F    +I      G+ + A  +  +M + G  P++V+YN
Sbjct: 296 ELAFALFAQMFLRGCDANIHTFT--PLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYN 353

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
           +++HGLC +G    A Q+ ++  + G LP+  TY +L++G     DL  A +    M+S 
Sbjct: 354 TLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISH 413

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
                       +  LC      +  +++  M    C P+ IT NT I G C  GR+E A
Sbjct: 414 GCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTITFNTFIKGLCGNGRVEWA 473

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
           +K+L  M  G  C P+  T+  ++  L  + + +EA  L +Q +  R   P +VTYN VL
Sbjct: 474 MKLLERM-QGHGCLPNITTYNELLDALFRMNKYEEAFGL-FQEIEARNLQPNLVTYNTVL 531

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
            G  R   + EA ++F   L  G   DS TY  +I   C+  ++  A +  + +      
Sbjct: 532 YGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVSSMKEW 591

Query: 419 HDNYV-YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463
           H + + Y ++I G C    I EA+ FL + ++ G+ PN   +N ++
Sbjct: 592 HPDIITYTSLIWGACNWMNIEEAMAFLDKAINQGICPNFATWNALV 637



 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 135/531 (25%), Positives = 228/531 (42%), Gaps = 51/531 (9%)

Query: 6   GLSRVGEAH---KLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           G  RVG A    K+F+ +   G  P V  Y  L+       +  +   ++  M+  G++P
Sbjct: 118 GYKRVGSAEQALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIP 177

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           N  TY++L++ + +   V+ A+ L  ++       +    +   +  +V SLC+ G +++
Sbjct: 178 NVFTYNILLKALCKNDRVDAAHKLFVEM-----SNKGCPPDAVTYTTMVSSLCKAGKIDD 232

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
              +A        V        +ID +C+ GR   A +++  M   G+ P++VSY+ I++
Sbjct: 233 ARELAGRFKPSVPVYNA-----LIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIIN 287

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
            LC  G    A+ L  +    G   + HT+  L++G      L +A  + + M+      
Sbjct: 288 SLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEP 347

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
                N  +  LC   +  E L V   M ++ C P+V T + +I+GF K G +  A +  
Sbjct: 348 NVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETW 407

Query: 303 NDMVAG----------------------------------KFCAPDAVTFTTIIFGLLNV 328
           N M++                                   + C P+ +TF T I GL   
Sbjct: 408 NRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTITFNTFIKGLCGN 467

Query: 329 GRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTT 388
           GR++ A+ LL + M   G  P I TYN +L  LFR+ + EEA  +F  +    +  +  T
Sbjct: 468 GRVEWAMKLL-ERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVT 526

Query: 389 YAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELV 448
           Y  V+ G   +  + EA + +   +      D+  Y  MI   C+ GK+  A   L E V
Sbjct: 527 YNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQ-LVERV 585

Query: 449 DSGVT--PNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            S     P+I+ Y  +I GAC      EA   L +    G+ P+  TW  L
Sbjct: 586 SSMKEWHPDIITYTSLIWGACNWMNIEEAMAFLDKAINQGICPNFATWNAL 636



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 115/467 (24%), Positives = 214/467 (45%), Gaps = 18/467 (3%)

Query: 31  SYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKL 90
           +Y  +I    R  EMD+   +  +M+  G+      +  ++ G  R    E+A     K+
Sbjct: 76  TYRVMIERLGRECEMDMVQYILQQMKMDGINCCEDLFICIINGYKRVGSAEQA----LKM 131

Query: 91  WERMKE---EEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMID 147
           + R+ E   +  + + N    +L+D+L  E     +  +  +M +   +   F    ++ 
Sbjct: 132 FYRIGEFGCKPTVRIYN----HLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILLK 187

Query: 148 SLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLP 207
           +LC++ R   A ++   M  +G  P  V+Y ++V  LCK G    A +L        + P
Sbjct: 188 ALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDARELAGR-----FKP 242

Query: 208 SEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVL 267
           S   Y  L++G+C E  +E A K+L  M+           +  + +LC+  N      + 
Sbjct: 243 SVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALF 302

Query: 268 VFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLN 327
             M    C  ++ T   +I G    G++ EAL +   M+    C P+ V + T+I GL +
Sbjct: 303 AQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDG-CEPNVVAYNTLIHGLCS 361

Query: 328 VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADST 387
            G ++EAL +  Q M + G  P + TY+ ++ G  +   +  A E +N M+  G   +  
Sbjct: 362 NGSLEEALQVCDQ-MQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVV 420

Query: 388 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYEL 447
           TY  ++D LC+++  D+A    + +       +   +   IKGLC +G++  A+  L  +
Sbjct: 421 TYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTITFNTFIKGLCGNGRVEWAMKLLERM 480

Query: 448 VDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
              G  PNI  YN ++D   +++   EA+ + +E+    L P+ VT+
Sbjct: 481 QGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTY 527



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 98/382 (25%), Positives = 170/382 (44%), Gaps = 50/382 (13%)

Query: 139 EFAC-------GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCM 191
           EF C        H++D+L    +    + +   M+K GL P++ +YN ++  LCK+    
Sbjct: 137 EFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCKNDRVD 196

Query: 192 RAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYL 251
            A++L  E    G  P   TY  +V  LC    ++ AR+                     
Sbjct: 197 AAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDARE--------------------- 235

Query: 252 RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC 311
                              L  + +P V   N +I+G CK GRIE A+K+L +M+     
Sbjct: 236 -------------------LAGRFKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGV- 275

Query: 312 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK 371
            P+ V+++ II  L   G ++ A  L  Q M  RG    I T+  +++G F   ++ EA 
Sbjct: 276 DPNVVSYSCIINSLCVSGNVELAFALFAQ-MFLRGCDANIHTFTPLIKGCFMRGKLYEAL 334

Query: 372 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 431
           +++  M+  G   +   Y  +I GLC +  L+EA +  D +     + +   Y+ +I G 
Sbjct: 335 DLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGF 394

Query: 432 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 491
            +SG +  A      ++  G  PN+V Y  ++D  CK SM  +A  ++ +M   G  P+ 
Sbjct: 395 AKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNT 454

Query: 492 VTWRILDK-LHGNRGNDFGLRI 512
           +T+    K L GN   ++ +++
Sbjct: 455 ITFNTFIKGLCGNGRVEWAMKL 476


>gi|22135795|gb|AAM91084.1| AT4g28010/T13J8_120 [Arabidopsis thaliana]
          Length = 704

 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 127/492 (25%), Positives = 237/492 (48%), Gaps = 7/492 (1%)

Query: 7   LSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLT 66
           + + G A  +   M  RG   NV ++  L+ G CR  E   A  +  EMR   ++P+  +
Sbjct: 120 MRKTGFAFGVLALMLKRGFAFNVYNHNILLKGLCRNLECGKAVSLLREMRRNSLMPDVFS 179

Query: 67  YSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRI 126
           Y+ ++RG    +++E+A     +L   MK     S +   +  L+D+ C+ G ++E    
Sbjct: 180 YNTVIRGFCEGKELEKA----LELANEMKGS-GCSWSLVTWGILIDAFCKAGKMDEAMGF 234

Query: 127 AEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK 186
            ++M       +      +I   C  G       +   + +RG +P  ++YN+++ G CK
Sbjct: 235 LKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCK 294

Query: 187 HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRI 246
            G    A ++ E  I+ G  P+ +TY  L++GLCG    ++A + L  M+ K +      
Sbjct: 295 LGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQPLNLMIEKDEEPNAVT 354

Query: 247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV 306
            NI +  LC      + + ++  M + + +PD IT N ++ G C  G ++EA K+L  M+
Sbjct: 355 YNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLML 414

Query: 307 A-GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLR 365
               +  PD +++  +I GL    R+ +AL+ +Y ++ ++  +   VT N +L    +  
Sbjct: 415 KDSSYTDPDVISYNALIHGLCKENRLHQALD-IYDLLVEKLGAGDRVTTNILLNSTLKAG 473

Query: 366 RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYA 425
            V +A E++  +    +V +S TY  +IDG C++  L+ AK     +         + Y 
Sbjct: 474 DVNKAMELWKQISDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYN 533

Query: 426 AMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN 485
            ++  LC+ G + +A     E+      P++V +N++IDG+ K    + A  +L  M + 
Sbjct: 534 CLLSSLCKEGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRA 593

Query: 486 GLNPDAVTWRIL 497
           GL+PD  T+  L
Sbjct: 594 GLSPDLFTYSKL 605



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 117/483 (24%), Positives = 217/483 (44%), Gaps = 10/483 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C   ++ EA     +MK  G   ++V YT+LI G+C  GE+D    +FDE+   G 
Sbjct: 219 IDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGD 278

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P ++TY+ L+RG  +   ++ A+ +   + ER      +  N   +  L+D LC  G  
Sbjct: 279 SPCAITYNTLIRGFCKLGQLKEASEIFEFMIER-----GVRPNVYTYTGLIDGLCGVGKT 333

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E  +    M +            +I+ LC+ G    A  +V +M+KR   P  ++YN +
Sbjct: 334 KEALQPLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNIL 393

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYL--PSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
           + GLC  G    A +LL   ++      P   +Y  L+ GLC E+ L +A  +   ++ K
Sbjct: 394 LGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQALDIYDLLVEK 453

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
                    NI L +     +  + + +   +  ++   +  T   +I+GFCK G +  A
Sbjct: 454 LGAGDRVTTNILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTAMIDGFCKTGMLNVA 513

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
             +L  M   +   P    +  ++  L   G + +A   L++ M +    P +V++N ++
Sbjct: 514 KGLLCKMRVSEL-QPSVFDYNCLLSSLCKEGSLDQAWR-LFEEMQRDNNFPDVVSFNIMI 571

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
            G  +   ++ A+ +   M   G+  D  TY+ +I+   +   LDEA  F+D +V     
Sbjct: 572 DGSLKAGDIKSAESLLVGMSRAGLSPDLFTYSKLINRFLKLGYLDEAISFFDKMVDSGFE 631

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKRE-AYQ 477
            D ++  +++K     G+  +    + +LVD  +  +      V+D  C  S   + A +
Sbjct: 632 PDAHICDSVLKYCISQGETDKLTELVKKLVDKDIVLDKELTCTVMDYMCNSSANMDLAKR 691

Query: 478 ILR 480
           +LR
Sbjct: 692 LLR 694



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 117/458 (25%), Positives = 207/458 (45%), Gaps = 29/458 (6%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C    +     LF ++  RG  P  ++Y TLI G+C+ G++  A ++F+ M   GV PN
Sbjct: 257 FCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPN 316

Query: 64  SLTYSVLVRG---VLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             TY+ L+ G   V +T++  +   LM         E+D   N   +  +++ LC++G V
Sbjct: 317 VYTYTGLIDGLCGVGKTKEALQPLNLMI--------EKDEEPNAVTYNIIINKLCKDGLV 368

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRG--LTPSLVSYN 178
            +   I E M + ++  +      ++  LC  G    AS+++Y+M K      P ++SYN
Sbjct: 369 ADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYN 428

Query: 179 SIVHGLCKHGGCMRA---YQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM 235
           +++HGLCK     +A   Y LL E +  G      T  +L+       D+ KA ++ + +
Sbjct: 429 ALIHGLCKENRLHQALDIYDLLVEKLGAG---DRVTTNILLNSTLKAGDVNKAMELWKQI 485

Query: 236 LSKKDVDRTRICNIYLRALCLIKNPTELLNV----LVFMLQTQCQPDVITLNTVINGFCK 291
              K V  +      +   C     T +LNV    L  M  ++ QP V   N +++  CK
Sbjct: 486 SDSKIVRNSDTYTAMIDGFC----KTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCK 541

Query: 292 MGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGI 351
            G +++A ++  +M       PD V+F  +I G L  G I+ A +LL   M + G SP +
Sbjct: 542 EGSLDQAWRLFEEMQRDN-NFPDVVSFNIMIDGSLKAGDIKSAESLLVG-MSRAGLSPDL 599

Query: 352 VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDD 411
            TY+ ++    +L  ++EA   F+ M+  G   D+     V+       + D+       
Sbjct: 600 FTYSKLINRFLKLGYLDEAISFFDKMVDSGFEPDAHICDSVLKYCISQGETDKLTELVKK 659

Query: 412 IVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449
           +V    + D  +   ++  +C S    +    L  + D
Sbjct: 660 LVDKDIVLDKELTCTVMDYMCNSSANMDLAKRLLRVTD 697



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 120/234 (51%), Gaps = 3/234 (1%)

Query: 270 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG 329
           ML+T    + ++L+ ++  + +M +   A  VL  M+   F A +      ++ GL    
Sbjct: 98  MLETDTFINFVSLSGLLECYVQMRKTGFAFGVLALMLKRGF-AFNVYNHNILLKGLCRNL 156

Query: 330 RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTY 389
              +A++LL + M +    P + +YN V+RG    + +E+A E+ N M G G      T+
Sbjct: 157 ECGKAVSLLRE-MRRNSLMPDVFSYNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTW 215

Query: 390 AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449
            I+ID  C++ ++DEA  F  ++ +     D  VY ++I+G C  G++        E+++
Sbjct: 216 GILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLE 275

Query: 450 SGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWR-ILDKLHG 502
            G +P  + YN +I G CKL   +EA +I   M + G+ P+  T+  ++D L G
Sbjct: 276 RGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCG 329



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 75/160 (46%)

Query: 338 LYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLC 397
            Y+ M +       V+ + +L    ++R+   A  V   ML  G   +   + I++ GLC
Sbjct: 94  FYRKMLETDTFINFVSLSGLLECYVQMRKTGFAFGVLALMLKRGFAFNVYNHNILLKGLC 153

Query: 398 ESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIV 457
            + +  +A     ++   S + D + Y  +I+G C   ++ +A+    E+  SG + ++V
Sbjct: 154 RNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEKALELANEMKGSGCSWSLV 213

Query: 458 CYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            + ++ID  CK     EA   L+EM+  GL  D V +  L
Sbjct: 214 TWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSL 253


>gi|359488050|ref|XP_002263119.2| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Vitis vinifera]
          Length = 686

 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 130/488 (26%), Positives = 231/488 (47%), Gaps = 7/488 (1%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M S G  P+V +   LI+ +C    +  A+ V  ++   G  P++ T++ L+RG+     
Sbjct: 176 MDSFGIPPDVYTLNILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGK 235

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
           +  A      L+++   E     +   +  L++ LC+ G  +   R+   M Q       
Sbjct: 236 IGEA----LHLFDKTIGE-GFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNV 290

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
            A   +IDSLC+  +   A  +   M  +G++P + +YNS++H LC          LL E
Sbjct: 291 IAYNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNE 350

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
            +    +P+   +  +V+ LC E  +  A  V+  M+ +            +   CL   
Sbjct: 351 MVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSE 410

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
             E + V   M+   C P+V + N +ING+C++ R+++A+ +L  M      A D VT+ 
Sbjct: 411 MDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIA-DTVTYN 469

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
           T+I GL +VGR+Q A+ L ++ M   G  P +VTY  +L  L +   + EA  +   + G
Sbjct: 470 TLIHGLCHVGRLQHAIALFHE-MVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEG 528

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
             + AD   Y I IDG+C + +L+ A+  + ++       D   Y  MI GLC+ G + E
Sbjct: 529 SNLDADILVYNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDE 588

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
           A     ++ ++G + +   YN +I G  + +    A Q+L+EM   G + D  T  ++ +
Sbjct: 589 ANKLFRKMDENGCSRDGCIYNTIIRGFLRSNETFGATQLLQEMLAEGFSADVSTTTLIVE 648

Query: 500 LHGNRGND 507
           +  + G D
Sbjct: 649 MLSDDGLD 656



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 124/465 (26%), Positives = 229/465 (49%), Gaps = 9/465 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C L R+G A  +   +   G  P+  ++ TLI G C  G++  A  +FD+    G 
Sbjct: 192 INSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGEGF 251

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TY  L+ G+ +  +   A  L+     R   +++   N  A+  ++DSLC++  V
Sbjct: 252 QPDVVTYGTLMNGLCKVGNTSAAIRLL-----RSMVQKNCRPNVIAYNTIIDSLCKDRQV 306

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E F +  +M       + F    +I +LC        + ++  M    + P++V ++++
Sbjct: 307 TEAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTV 366

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           V  LCK G    A+ +++  I+ G  P   TY  L++G C  S++++A KV   M+ K  
Sbjct: 367 VDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGC 426

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           V   R  NI +   C I+   + + +L  M       D +T NT+I+G C +GR++ A+ 
Sbjct: 427 VPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIA 486

Query: 301 VLNDMVA-GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           + ++MVA G+   PD VT+  ++  L     + EA+ LL + +        I+ YN  + 
Sbjct: 487 LFHEMVASGQI--PDLVTYRILLDYLCKNHHLAEAMVLL-KAIEGSNLDADILVYNIAID 543

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
           G+ R   +E A+++F+ +   G+  D  TY I+I GLC+   LDEA + +  +       
Sbjct: 544 GMCRAGELEAARDLFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEANKLFRKMDENGCSR 603

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
           D  +Y  +I+G  RS +   A   L E++  G + ++    ++++
Sbjct: 604 DGCIYNTIIRGFLRSNETFGATQLLQEMLAEGFSADVSTTTLIVE 648



 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 108/390 (27%), Positives = 193/390 (49%), Gaps = 2/390 (0%)

Query: 107 FANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMR 166
           F  L+ S+ +  + + V  ++  M       + +    +I+S C   R   A  V+  + 
Sbjct: 153 FTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILINSFCHLRRLGYAFSVLAKLL 212

Query: 167 KRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLE 226
           K G  P   ++N+++ GLC  G    A  L ++ I  G+ P   TY  L+ GLC   +  
Sbjct: 213 KLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGEGFQPDVVTYGTLMNGLCKVGNTS 272

Query: 227 KARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVI 286
            A ++L+ M+ K         N  + +LC  +  TE  N+   M+     PD+ T N++I
Sbjct: 273 AAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFTYNSLI 332

Query: 287 NGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
           +  C +   +    +LN+MV  K   P+ V F+T++  L   G I  A +++  +M +RG
Sbjct: 333 HALCNLCEWKHVTTLLNEMVNSKI-MPNVVVFSTVVDALCKEGMIAIAHDVV-DMMIKRG 390

Query: 347 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
             P +VTY A++ G      ++EA +VF+ M+  G V +  +Y I+I+G C+  ++D+A 
Sbjct: 391 VEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAM 450

Query: 407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466
              + +     I D   Y  +I GLC  G++  A+   +E+V SG  P++V Y +++D  
Sbjct: 451 GLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYL 510

Query: 467 CKLSMKREAYQILREMRKNGLNPDAVTWRI 496
           CK     EA  +L+ +  + L+ D + + I
Sbjct: 511 CKNHHLAEAMVLLKAIEGSNLDADILVYNI 540



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 102/405 (25%), Positives = 187/405 (46%), Gaps = 8/405 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M+ LC +     A +L   M  +   PNV++Y T+I   C+  ++  A+ +F EM   G+
Sbjct: 262 MNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGI 321

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+  TY+ L+  +    + +    L+ ++         +  N   F+ +VD+LC+EG +
Sbjct: 322 SPDIFTYNSLIHALCNLCEWKHVTTLLNEMV-----NSKIMPNVVVFSTVVDALCKEGMI 376

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                + + M +     +      ++D  C       A +V   M  +G  P++ SYN +
Sbjct: 377 AIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNIL 436

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++G C+     +A  LLE+    G +    TY  L+ GLC    L+ A  +   M++   
Sbjct: 437 INGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQ 496

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           +       I L  LC   +  E + +L  +  +    D++  N  I+G C+ G +E A  
Sbjct: 497 IPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARD 556

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           + +++ + K   PD  T+  +I GL   G + EA N L++ M + G S     YN ++RG
Sbjct: 557 LFSNL-SSKGLQPDVRTYNIMIHGLCKRGLLDEA-NKLFRKMDENGCSRDGCIYNTIIRG 614

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA 405
             R      A ++   ML  G  AD +T  ++++ L + + LD++
Sbjct: 615 FLRSNETFGATQLLQEMLAEGFSADVSTTTLIVEMLSD-DGLDQS 658



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 94/203 (46%), Gaps = 2/203 (0%)

Query: 295 IEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTY 354
           +++AL   N M+      P  V FT ++  +  +      L+L  Q M   G  P + T 
Sbjct: 131 LDDALSSFNRMLH-MHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQ-MDSFGIPPDVYTL 188

Query: 355 NAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVW 414
           N ++     LRR+  A  V   +L +G   D+TT+  +I GLC   ++ EA   +D  + 
Sbjct: 189 NILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIG 248

Query: 415 PSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKRE 474
                D   Y  ++ GLC+ G    A+  L  +V     PN++ YN +ID  CK     E
Sbjct: 249 EGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTE 308

Query: 475 AYQILREMRKNGLNPDAVTWRIL 497
           A+ +  EM   G++PD  T+  L
Sbjct: 309 AFNLFSEMITKGISPDIFTYNSL 331


>gi|359477281|ref|XP_003631958.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Vitis vinifera]
          Length = 898

 Score =  196 bits (497), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 150/569 (26%), Positives = 245/569 (43%), Gaps = 79/569 (13%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC  +R+ EA +LF  ++    VP   +Y T+I GY   G+ D AY + +  +  G +P+
Sbjct: 310 LCKANRLDEAVELFEQLEQNRKVPCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKGSIPS 369

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            + Y+ ++  + + R VE A     +++E MK   D   N   +  L+D LCREG +N  
Sbjct: 370 VIAYNCILTCLGKKRRVEEA----LRIFEEMKR--DAVPNVPTYNILIDMLCREGKLNAA 423

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             I +DM +            MID LC++ +   A  +   M  +  TP+ V+++S++ G
Sbjct: 424 LEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDG 483

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGL--CGESD----------------- 224
           L K G    AY L E+ +  G++P    Y  L+     CG  +                 
Sbjct: 484 LGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPD 543

Query: 225 ----------------LEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLV 268
                            EK R + + + +   +   R  +I +  L       E   +  
Sbjct: 544 LTLINTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLANETYELFY 603

Query: 269 FMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL--- 325
            M +  C  D    N VI+GFCK G++ +A ++L +M   K   P  VT+ ++I GL   
Sbjct: 604 AMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKV-KGHPPTVVTYGSVIDGLAKI 662

Query: 326 -------------------LNV-------------GRIQEALNLLYQVMPQRGYSPGIVT 353
                              LNV             GRI EA  ++ ++M Q+G +P + T
Sbjct: 663 DRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELM-QKGLTPNVYT 721

Query: 354 YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413
           +N +L  L +   + EA   F  M  +    +  TY+I+I+GLC   + ++A  FW ++ 
Sbjct: 722 WNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQ 781

Query: 414 WPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKR 473
                 +   Y  MI GL ++G I EA         +G  P+   YN +I+G    +   
Sbjct: 782 KLGLKPNTITYTTMISGLAKAGNILEASGLFSRFKANGGIPDSASYNAMIEGLSSANKAM 841

Query: 474 EAYQILREMRKNGLNPDAVTWRI-LDKLH 501
           +AY +  E R  G N    T  + LD LH
Sbjct: 842 DAYALFEETRLKGCNIHTKTCVVLLDALH 870



 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 127/492 (25%), Positives = 235/492 (47%), Gaps = 12/492 (2%)

Query: 16  LFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVL 75
           LF  M+  G+  NV  +TTLI  + R G +D A  + DEM+   +  + + Y+V +    
Sbjct: 217 LFHQMQELGYEVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLDADIVLYNVCIDCFG 276

Query: 76  RTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKS 135
           +   V+    + +K +  MK    L  ++  + +++  LC+   ++E   + E + Q + 
Sbjct: 277 KAGKVD----MSWKFFHEMKSH-GLMPDDVTYTSMIGVLCKANRLDEAVELFEQLEQNRK 331

Query: 136 VNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQ 195
           V   +A   MI     +G+   A  ++   + +G  PS+++YN I+  L K      A +
Sbjct: 332 VPCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKGSIPSVIAYNCILTCLGKKRRVEEALR 391

Query: 196 LLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALC 255
           + EE ++   +P+  TY +L++ LC E  L  A ++   M            NI +  LC
Sbjct: 392 IFEE-MKRDAVPNVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLC 450

Query: 256 LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCA--P 313
             +   E  ++   M    C P+ +T +++I+G  K GR+++A  +   M+    C   P
Sbjct: 451 KAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLD---CGHVP 507

Query: 314 DAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEV 373
            A+ +T++I      GR ++  + +Y+ M   G SP +   N  +  +F+    E+ + +
Sbjct: 508 GAIVYTSLIRSFFKCGRKEDG-HKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRAL 566

Query: 374 FNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR 433
           F  +   G + D+ +Y+I+I GL ++   +E    +  +     + D + Y A+I G C+
Sbjct: 567 FREINAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCK 626

Query: 434 SGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVT 493
           SGK+++A   L E+   G  P +V Y  VIDG  K+    EAY +  E + NG+  + V 
Sbjct: 627 SGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVV 686

Query: 494 WRILDKLHGNRG 505
           +  L    G  G
Sbjct: 687 YSSLIDGFGKVG 698



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 131/494 (26%), Positives = 228/494 (46%), Gaps = 11/494 (2%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           ++ EA  +   M+     P   +YT LI       E D    +F +M+  G   N   ++
Sbjct: 175 KLREAFDIIQTMRKFKFRPAFSAYTILIGALSEVREPDPMLILFHQMQELGYEVNVHLFT 234

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
            L+R   R   V+ A      L + MK    L  +   +   +D   + G V+  ++   
Sbjct: 235 TLIRVFAREGRVDAA----LSLLDEMK-SNSLDADIVLYNVCIDCFGKAGKVDMSWKFFH 289

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
           +M     + ++     MI  LC++ R   A  +   + +    P   +YN+++ G    G
Sbjct: 290 EMKSHGLMPDDVTYTSMIGVLCKANRLDEAVELFEQLEQNRKVPCAYAYNTMIMGYGSAG 349

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD-VDRTRIC 247
               AY LLE     G +PS   Y  ++  L  +  +E+A ++ + M  K+D V      
Sbjct: 350 KFDEAYGLLERQKAKGSIPSVIAYNCILTCLGKKRRVEEALRIFEEM--KRDAVPNVPTY 407

Query: 248 NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA 307
           NI +  LC        L +   M +    P+V+T+N +I+  CK  ++EEA  +   M  
Sbjct: 408 NILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGM-D 466

Query: 308 GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRV 367
            K C P+AVTF+++I GL   GR+ +A + LY+ M   G+ PG + Y +++R  F+  R 
Sbjct: 467 DKVCTPNAVTFSSLIDGLGKCGRVDDAYS-LYEKMLDCGHVPGAIVYTSLIRSFFKCGRK 525

Query: 368 EEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAM 427
           E+  +++  M+  G   D T     +D + ++ + ++ +  + +I     I D   Y+ +
Sbjct: 526 EDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSIL 585

Query: 428 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
           I GL ++G  +E     Y + + G   +   YN VIDG CK     +AYQ+L EM+  G 
Sbjct: 586 IHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGH 645

Query: 488 NPDAVTW-RILDKL 500
            P  VT+  ++D L
Sbjct: 646 PPTVVTYGSVIDGL 659



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 111/435 (25%), Positives = 198/435 (45%), Gaps = 32/435 (7%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D+LC   ++ EA  +F  M  +   PN V++++LI G  + G +D AY ++++M  CG 
Sbjct: 446 IDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGH 505

Query: 61  LPNSLTYSVLVRGVLR-------------------TRDVERANVLM---FKLWERMKEEE 98
           +P ++ Y+ L+R   +                   + D+   N  M   FK  E  K   
Sbjct: 506 VPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRA 565

Query: 99  DLSVNNA--------AFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC 150
                NA        +++ L+  L + G  NE + +   M +   V +  A   +ID  C
Sbjct: 566 LFREINAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFC 625

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
           +SG+ + A +++  M+ +G  P++V+Y S++ GL K      AY L EE    G   +  
Sbjct: 626 KSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVV 685

Query: 211 TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM 270
            Y  L++G      +++A  +++ ++ K         N  L AL   +   E L     M
Sbjct: 686 VYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSM 745

Query: 271 LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR 330
              +C P+ IT + +ING C++ +  +A     +M       P+ +T+TT+I GL   G 
Sbjct: 746 KDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQKLGL-KPNTITYTTMISGLAKAGN 804

Query: 331 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYA 390
           I EA  L  +     G  P   +YNA++ GL    +  +A  +F      G    + T  
Sbjct: 805 ILEASGLFSRFKANGGI-PDSASYNAMIEGLSSANKAMDAYALFEETRLKGCNIHTKTCV 863

Query: 391 IVIDGLCESNQLDEA 405
           +++D L ++  L++A
Sbjct: 864 VLLDALHKAECLEQA 878



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 95/390 (24%), Positives = 153/390 (39%), Gaps = 69/390 (17%)

Query: 176 SYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM 235
           +YNS++  + ++       ++LEE    G+ PS +    LV        L +A  ++Q M
Sbjct: 127 AYNSLLMVMARNTEFDHLERILEEMSLSGFGPSSNISIELVANCVKSRKLREAFDIIQTM 186

Query: 236 LSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 295
              K         I + AL  ++ P  +L +   M +   + +V    T+I  F + GR+
Sbjct: 187 RKFKFRPAFSAYTILIGALSEVREPDPMLILFHQMQELGYEVNVHLFTTLIRVFAREGRV 246

Query: 296 EEALKVLNDMVAGKFCA----------------------------------PDAVTFTTI 321
           + AL +L++M +    A                                  PD VT+T++
Sbjct: 247 DAALSLLDEMKSNSLDADIVLYNVCIDCFGKAGKVDMSWKFFHEMKSHGLMPDDVTYTSM 306

Query: 322 IFGLLNVGRIQEALNLLYQVMPQR----------------------------------GY 347
           I  L    R+ EA+ L  Q+   R                                  G 
Sbjct: 307 IGVLCKANRLDEAVELFEQLEQNRKVPCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKGS 366

Query: 348 SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKR 407
            P ++ YN +L  L + RRVEEA  +F  M     V +  TY I+ID LC   +L+ A  
Sbjct: 367 IPSVIAYNCILTCLGKKRRVEEALRIFEEM-KRDAVPNVPTYNILIDMLCREGKLNAALE 425

Query: 408 FWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGAC 467
             DD+       +      MI  LC++ K+ EA      + D   TPN V ++ +IDG  
Sbjct: 426 IRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLG 485

Query: 468 KLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           K     +AY +  +M   G  P A+ +  L
Sbjct: 486 KCGRVDDAYSLYEKMLDCGHVPGAIVYTSL 515



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 102/223 (45%), Gaps = 3/223 (1%)

Query: 291 KMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG 350
           K  ++ EA  ++  M   KF    A +  TI+ G L+  R  + + +L+  M + GY   
Sbjct: 172 KSRKLREAFDIIQTMRKFKF--RPAFSAYTILIGALSEVREPDPMLILFHQMQELGYEVN 229

Query: 351 IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD 410
           +  +  ++R   R  RV+ A  + + M    + AD   Y + ID   ++ ++D + +F+ 
Sbjct: 230 VHLFTTLIRVFAREGRVDAALSLLDEMKSNSLDADIVLYNVCIDCFGKAGKVDMSWKFFH 289

Query: 411 DIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLS 470
           ++     + D+  Y +MI  LC++ ++ EAV    +L  +   P    YN +I G     
Sbjct: 290 EMKSHGLMPDDVTYTSMIGVLCKANRLDEAVELFEQLEQNRKVPCAYAYNTMIMGYGSAG 349

Query: 471 MKREAYQILREMRKNGLNPDAVTWR-ILDKLHGNRGNDFGLRI 512
              EAY +L   +  G  P  + +  IL  L   R  +  LRI
Sbjct: 350 KFDEAYGLLERQKAKGSIPSVIAYNCILTCLGKKRRVEEALRI 392



 Score = 42.7 bits (99), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 3/97 (3%)

Query: 4   LCGLSRVG---EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           + GL++ G   EA  LF   K+ G +P+  SY  +I G     +   AY +F+E R  G 
Sbjct: 796 ISGLAKAGNILEASGLFSRFKANGGIPDSASYNAMIEGLSSANKAMDAYALFEETRLKGC 855

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEE 97
             ++ T  VL+  + +   +E+A ++   L E  K +
Sbjct: 856 NIHTKTCVVLLDALHKAECLEQAAIVGAVLKETAKSQ 892


>gi|359493281|ref|XP_002272603.2| PREDICTED: pentatricopeptide repeat-containing protein At5g55840-like
            [Vitis vinifera]
          Length = 2037

 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 143/513 (27%), Positives = 245/513 (47%), Gaps = 30/513 (5%)

Query: 1    MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
            +D LC   R  +A+ L   M+     PN V+Y TLI+G+ + G++ VA +VF+EM    +
Sbjct: 1061 IDNLCTNHRSAKAYLLLKKMRKEMISPNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDL 1120

Query: 61   LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             PN +TY+ L+ G     D E A     +L + M E   L +N   +  L++ LC+    
Sbjct: 1121 SPNCVTYNALIGGHCHVGDFEEA----LRLLDHM-EAAGLRLNEVTYGTLLNGLCK---- 1171

Query: 121  NEVFRIAEDMPQGKSVNEEFACGH-----MIDSLCRSGRNHGASRVVYVMRKRGLTPSLV 175
            +E F +A+ + +   VN +   GH     +ID LC++G    A ++V  M K G+ P ++
Sbjct: 1172 HEKFELAKRLLERMRVN-DMVVGHIAYTVLIDGLCKNGMLDEAVQLVGNMYKDGVNPDVI 1230

Query: 176  SYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM 235
            +Y+S+++G C+ G    A +++    + G + ++  Y  L+   C   ++ +A KV   M
Sbjct: 1231 TYSSLINGFCRVGNIKSAKEIICRMYRSGLVLNKIIYSTLIYNFCQHGNVTEAMKVYAVM 1290

Query: 236  LSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 295
                       CN+ + +LC      E    L  M +    P+ IT + +ING+  +G  
Sbjct: 1291 NCNGHGADHFTCNVLVSSLCRDGKLGEAEKFLCHMSRIGLVPNSITYDCIINGYGSIGDP 1350

Query: 296  EEALKVLNDMVAGKFCA--PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGI-- 351
              A    +DM+    C   P   T+ +++ GL   G + EA   L ++     Y PG   
Sbjct: 1351 LNAFSFFDDMIK---CGQHPSFFTYGSLLKGLCKGGNLVEAKKFLNRLH----YIPGAVD 1403

Query: 352  -VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD 410
             V YN +L    +   + EA  +F+ M+   V+ DS TY+ ++ GLC   +   A   + 
Sbjct: 1404 SVMYNTLLAETCKSGNLHEAVALFDKMVQNNVLPDSYTYSSLLTGLCRKGKAVTAVCLFG 1463

Query: 411  DIVWPSNIHDNYV-YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKL 469
              +    +  N+V Y  ++ GL ++G    A +F  E++  G  P+ V +N +ID   + 
Sbjct: 1464 TAMGRGTLFPNHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRR 1523

Query: 470  SMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
                +A      MR  G+ P+  T+ IL  LHG
Sbjct: 1524 GQMMKANDFFSTMRWWGVCPNLATYNIL--LHG 1554



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 144/544 (26%), Positives = 239/544 (43%), Gaps = 38/544 (6%)

Query: 1    MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
            ++ LC    + +A  L   M+  G VP +V+Y TL++ YC+ G    A ++ D M   G+
Sbjct: 991  INGLCVEGNLKKAGNLLKQMEENGFVPTIVTYNTLLNWYCKKGRYKAAIELIDYMICKGI 1050

Query: 61   LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERM----------------KEEE------ 98
              +  TY+V +  +       +A +L+ K+ + M                KE +      
Sbjct: 1051 EADVCTYNVFIDNLCTNHRSAKAYLLLKKMRKEMISPNEVTYNTLINGFVKEGKIGVAAQ 1110

Query: 99   --------DLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC 150
                    DLS N   +  L+   C  G   E  R+ + M        E   G +++ LC
Sbjct: 1111 VFNEMSKFDLSPNCVTYNALIGGHCHVGDFEEALRLLDHMEAAGLRLNEVTYGTLLNGLC 1170

Query: 151  RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
            +  +   A R++  MR   +    ++Y  ++ GLCK+G    A QL+    + G  P   
Sbjct: 1171 KHEKFELAKRLLERMRVNDMVVGHIAYTVLIDGLCKNGMLDEAVQLVGNMYKDGVNPDVI 1230

Query: 211  TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM 270
            TY  L+ G C   +++ A++++  M     V    I +  +   C   N TE + V   M
Sbjct: 1231 TYSSLINGFCRVGNIKSAKEIICRMYRSGLVLNKIIYSTLIYNFCQHGNVTEAMKVYAVM 1290

Query: 271  LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR 330
                   D  T N +++  C+ G++ EA K L  M       P+++T+  II G  ++G 
Sbjct: 1291 NCNGHGADHFTCNVLVSSLCRDGKLGEAEKFLCHMSRIGL-VPNSITYDCIINGYGSIGD 1349

Query: 331  IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYA 390
               A +  +  M + G  P   TY ++L+GL +   + EAK+  N +  I    DS  Y 
Sbjct: 1350 PLNAFS-FFDDMIKCGQHPSFFTYGSLLKGLCKGGNLVEAKKFLNRLHYIPGAVDSVMYN 1408

Query: 391  IVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 450
             ++   C+S  L EA   +D +V  + + D+Y Y++++ GLCR GK   AV      +  
Sbjct: 1409 TLLAETCKSGNLHEAVALFDKMVQNNVLPDSYTYSSLLTGLCRKGKAVTAVCLFGTAMGR 1468

Query: 451  G-VTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG---- 505
            G + PN V Y  ++DG  K    + A+    EM K G  PD V +  +      RG    
Sbjct: 1469 GTLFPNHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMMK 1528

Query: 506  -NDF 508
             NDF
Sbjct: 1529 ANDF 1532



 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 127/492 (25%), Positives = 227/492 (46%), Gaps = 12/492 (2%)

Query: 9    RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
            ++G A ++F +M      PN V+Y  LI G+C  G+ + A ++ D M   G+  N +TY 
Sbjct: 1104 KIGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHVGDFEEALRLLDHMEAAGLRLNEVTYG 1163

Query: 69   VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
             L+ G+ +    E A     +L ERM+   D+ V + A+  L+D LC+ G ++E  ++  
Sbjct: 1164 TLLNGLCKHEKFELAK----RLLERMRVN-DMVVGHIAYTVLIDGLCKNGMLDEAVQLVG 1218

Query: 129  DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
            +M +     +      +I+  CR G    A  ++  M + GL  + + Y+++++  C+HG
Sbjct: 1219 NMYKDGVNPDVITYSSLINGFCRVGNIKSAKEIICRMYRSGLVLNKIIYSTLIYNFCQHG 1278

Query: 189  GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
                A ++       G+     T  VLV  LC +  L +A K L  M     V  +   +
Sbjct: 1279 NVTEAMKVYAVMNCNGHGADHFTCNVLVSSLCRDGKLGEAEKFLCHMSRIGLVPNSITYD 1338

Query: 249  IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM--V 306
              +     I +P    +    M++    P   T  +++ G CK G + EA K LN +  +
Sbjct: 1339 CIINGYGSIGDPLNAFSFFDDMIKCGQHPSFFTYGSLLKGLCKGGNLVEAKKFLNRLHYI 1398

Query: 307  AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 366
             G   A D+V + T++      G + EA+ L +  M Q    P   TY+++L GL R  +
Sbjct: 1399 PG---AVDSVMYNTLLAETCKSGNLHEAVAL-FDKMVQNNVLPDSYTYSSLLTGLCRKGK 1454

Query: 367  VEEAKEVFNCMLGIGVV-ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYA 425
               A  +F   +G G +  +   Y  ++DGL ++     A  F+++++      D   + 
Sbjct: 1455 AVTAVCLFGTAMGRGTLFPNHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFN 1514

Query: 426  AMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN 485
            A+I    R G++ +A  F   +   GV PN+  YN+++ G  K         +   M + 
Sbjct: 1515 AIIDSCSRRGQMMKANDFFSTMRWWGVCPNLATYNILLHGFSKKQALLRYLSLYSTMMRE 1574

Query: 486  GLNPDAVTWRIL 497
            G+ PD +T+  L
Sbjct: 1575 GIFPDKLTFHSL 1586



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 127/531 (23%), Positives = 233/531 (43%), Gaps = 39/531 (7%)

Query: 1    MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
            ++ LC   +   A +L   M+    V   ++YT LI G C+ G +D A ++   M   GV
Sbjct: 1166 LNGLCKHEKFELAKRLLERMRVNDMVVGHIAYTVLIDGLCKNGMLDEAVQLVGNMYKDGV 1225

Query: 61   LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             P+ +TYS L+ G  R  +++ A  ++ +++        L +N   ++ L+ + C+ G V
Sbjct: 1226 NPDVITYSSLINGFCRVGNIKSAKEIICRMYR-----SGLVLNKIIYSTLIYNFCQHGNV 1280

Query: 121  NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
             E  ++   M       + F C  ++ SLCR G+   A + +  M + GL P+ ++Y+ I
Sbjct: 1281 TEAMKVYAVMNCNGHGADHFTCNVLVSSLCRDGKLGEAEKFLCHMSRIGLVPNSITYDCI 1340

Query: 181  VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
            ++G    G  + A+   ++ I+ G  PS  TY  L++GLC   +L +A+K L  +     
Sbjct: 1341 INGYGSIGDPLNAFSFFDDMIKCGQHPSFFTYGSLLKGLCKGGNLVEAKKFLNRLHYIPG 1400

Query: 241  VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
               + + N  L   C   N  E + +   M+Q    PD  T ++++ G C+ G+   A+ 
Sbjct: 1401 AVDSVMYNTLLAETCKSGNLHEAVALFDKMVQNNVLPDSYTYSSLLTGLCRKGKAVTAVC 1460

Query: 301  VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEAL------------------------- 335
            +    +      P+ V +T ++ GL   G  + A                          
Sbjct: 1461 LFGTAMGRGTLFPNHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSC 1520

Query: 336  ---------NLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
                     N  +  M   G  P + TYN +L G  + + +     +++ M+  G+  D 
Sbjct: 1521 SRRGQMMKANDFFSTMRWWGVCPNLATYNILLHGFSKKQALLRYLSLYSTMMREGIFPDK 1580

Query: 387  TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE 446
             T+  +I GL +S   D   +    ++    + D + +  +I     SGK+ +A   +  
Sbjct: 1581 LTFHSLILGLSKSGIPDLGVKLLGKMIMEGTLADQFTFNILINKYSESGKMRKAFDLVNF 1640

Query: 447  LVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            +   GV P+   YN + +G  K S  RE+  +L EM +NG+ P    +  L
Sbjct: 1641 MNTLGVFPDRDTYNHIFNGLNKKSAFRESTVVLHEMLENGVIPKHAQYITL 1691



 Score =  171 bits (433), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 128/483 (26%), Positives = 226/483 (46%), Gaps = 7/483 (1%)

Query: 15   KLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGV 74
             LF +M  +G  PNV ++  LI+G C  G +  A  +  +M   G +P  +TY+ L+   
Sbjct: 970  SLFREMSDKGICPNVGTFNILINGLCVEGNLKKAGNLLKQMEENGFVPTIVTYNTLLNWY 1029

Query: 75   LRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGK 134
             + +   +A + +         E D+   N      +D+LC      + + + + M +  
Sbjct: 1030 CK-KGRYKAAIELIDYMICKGIEADVCTYNV----FIDNLCTNHRSAKAYLLLKKMRKEM 1084

Query: 135  SVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAY 194
                E     +I+   + G+   A++V   M K  L+P+ V+YN+++ G C  G    A 
Sbjct: 1085 ISPNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHVGDFEEAL 1144

Query: 195  QLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRAL 254
            +LL+     G   +E TY  L+ GLC     E A+++L+ M     V       + +  L
Sbjct: 1145 RLLDHMEAAGLRLNEVTYGTLLNGLCKHEKFELAKRLLERMRVNDMVVGHIAYTVLIDGL 1204

Query: 255  CLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPD 314
            C      E + ++  M +    PDVIT +++INGFC++G I+ A +++  M        +
Sbjct: 1205 CKNGMLDEAVQLVGNMYKDGVNPDVITYSSLINGFCRVGNIKSAKEIICRMYRSGLVL-N 1263

Query: 315  AVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVF 374
             + ++T+I+     G + EA+  +Y VM   G+     T N ++  L R  ++ EA++  
Sbjct: 1264 KIIYSTLIYNFCQHGNVTEAMK-VYAVMNCNGHGADHFTCNVLVSSLCRDGKLGEAEKFL 1322

Query: 375  NCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRS 434
              M  IG+V +S TY  +I+G         A  F+DD++        + Y +++KGLC+ 
Sbjct: 1323 CHMSRIGLVPNSITYDCIINGYGSIGDPLNAFSFFDDMIKCGQHPSFFTYGSLLKGLCKG 1382

Query: 435  GKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
            G + EA  FL  L       + V YN ++   CK     EA  +  +M +N + PD+ T+
Sbjct: 1383 GNLVEAKKFLNRLHYIPGAVDSVMYNTLLAETCKSGNLHEAVALFDKMVQNNVLPDSYTY 1442

Query: 495  RIL 497
              L
Sbjct: 1443 SSL 1445



 Score =  161 bits (408), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 122/482 (25%), Positives = 227/482 (47%), Gaps = 25/482 (5%)

Query: 26   VPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANV 85
            +P+V  +  LI  Y + G +D A + F+ +   G  P+  T ++++  +++ +  E    
Sbjct: 913  IPSV--FDLLIRVYLKEGMIDYAVETFELVGLVGFKPSVYTCNMILASMVKDKRTEL--- 967

Query: 86   LMFKLWERMKEEEDLSV--NNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACG 143
                +W   +E  D  +  N   F  L++ LC EG + +   + + M +   V       
Sbjct: 968  ----VWSLFREMSDKGICPNVGTFNILINGLCVEGNLKKAGNLLKQMEENGFVPTIVTYN 1023

Query: 144  HMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQF 203
             +++  C+ GR   A  ++  M  +G+   + +YN  +  LC +    +AY LL++  + 
Sbjct: 1024 TLLNWYCKKGRYKAAIELIDYMICKGIEADVCTYNVFIDNLCTNHRSAKAYLLLKKMRKE 1083

Query: 204  GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC-NIYLRALCLIKNPTE 262
               P+E TY  L+ G   E  +  A +V   M SK D+    +  N  +   C + +  E
Sbjct: 1084 MISPNEVTYNTLINGFVKEGKIGVAAQVFNEM-SKFDLSPNCVTYNALIGGHCHVGDFEE 1142

Query: 263  LLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL-----NDMVAGKFCAPDAVT 317
             L +L  M     + + +T  T++NG CK  + E A ++L     NDMV G       + 
Sbjct: 1143 ALRLLDHMEAAGLRLNEVTYGTLLNGLCKHEKFELAKRLLERMRVNDMVVGH------IA 1196

Query: 318  FTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCM 377
            +T +I GL   G + EA+ L+   M + G +P ++TY++++ G  R+  ++ AKE+   M
Sbjct: 1197 YTVLIDGLCKNGMLDEAVQLVGN-MYKDGVNPDVITYSSLINGFCRVGNIKSAKEIICRM 1255

Query: 378  LGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKI 437
               G+V +   Y+ +I   C+   + EA + +  +    +  D++    ++  LCR GK+
Sbjct: 1256 YRSGLVLNKIIYSTLIYNFCQHGNVTEAMKVYAVMNCNGHGADHFTCNVLVSSLCRDGKL 1315

Query: 438  HEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
             EA  FL  +   G+ PN + Y+ +I+G   +     A+    +M K G +P   T+  L
Sbjct: 1316 GEAEKFLCHMSRIGLVPNSITYDCIINGYGSIGDPLNAFSFFDDMIKCGQHPSFFTYGSL 1375

Query: 498  DK 499
             K
Sbjct: 1376 LK 1377



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 130/533 (24%), Positives = 222/533 (41%), Gaps = 43/533 (8%)

Query: 1    MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
            +  LC   ++GEA K    M   G VPN ++Y  +I+GY   G+   A+  FD+M  CG 
Sbjct: 1306 VSSLCRDGKLGEAEKFLCHMSRIGLVPNSITYDCIINGYGSIGDPLNAFSFFDDMIKCGQ 1365

Query: 61   LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             P+  TY  L++G+ +  ++  A     K   R+      +V++  +  L+   C+ G +
Sbjct: 1366 HPSFFTYGSLLKGLCKGGNLVEAK----KFLNRLHYIPG-AVDSVMYNTLLAETCKSGNL 1420

Query: 121  NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRG-LTPSLVSYNS 179
            +E   + + M Q   + + +    ++  LCR G+   A  +      RG L P+ V Y  
Sbjct: 1421 HEAVALFDKMVQNNVLPDSYTYSSLLTGLCRKGKAVTAVCLFGTAMGRGTLFPNHVMYTC 1480

Query: 180  IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
            +V GL K G    A+   EE ++ G  P    +  +++       + KA      M    
Sbjct: 1481 LVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMMKANDFFSTMRWWG 1540

Query: 240  DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                    NI L      +     L++   M++    PD +T +++I G  K G  +  +
Sbjct: 1541 VCPNLATYNILLHGFSKKQALLRYLSLYSTMMREGIFPDKLTFHSLILGLSKSGIPDLGV 1600

Query: 300  KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
            K+L  M+     A D  TF  +I      G++++A +L+   M   G  P   TYN +  
Sbjct: 1601 KLLGKMIMEGTLA-DQFTFNILINKYSESGKMRKAFDLV-NFMNTLGVFPDRDTYNHIFN 1658

Query: 360  GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
            GL +     E+  V + ML  GV+     Y  +I+G+C    +  A +  D++       
Sbjct: 1659 GLNKKSAFRESTVVLHEMLENGVIPKHAQYITLINGMCRVGDIQGAFKLKDEMEALGFGS 1718

Query: 420  DNYVYAAMIKGL-----------------------------------CRSGKIHEAVHFL 444
                 +AM++GL                                   CR  KI EA+   
Sbjct: 1719 HEVAESAMVRGLLHCGKTEDAMLVLDHMLRMRLLPTIATFTTLMHRFCRDAKIAEALKLK 1778

Query: 445  YELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
              +   G+  ++V YNV+I G C       A+++  EMR   L P+  T+ +L
Sbjct: 1779 GVMELCGLKLDVVAYNVLIMGMCANGDSAAAFELYEEMRHRDLCPNITTYAVL 1831



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 127/496 (25%), Positives = 214/496 (43%), Gaps = 6/496 (1%)

Query: 4    LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            LC    + EA K    +       + V Y TL+   C++G +  A  +FD+M    VLP+
Sbjct: 1379 LCKGGNLVEAKKFLNRLHYIPGAVDSVMYNTLLAETCKSGNLHEAVALFDKMVQNNVLPD 1438

Query: 64   SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            S TYS L+ G+ R      A  L      R      L  N+  +  LVD L + G+    
Sbjct: 1439 SYTYSSLLTGLCRKGKAVTAVCLFGTAMGR----GTLFPNHVMYTCLVDGLSKAGHPKAA 1494

Query: 124  FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            F   E+M +  +  +  A   +IDS  R G+   A+     MR  G+ P+L +YN ++HG
Sbjct: 1495 FYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMMKANDFFSTMRWWGVCPNLATYNILLHG 1554

Query: 184  LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
              K    +R   L    ++ G  P + T+  L+ GL      +   K+L  M+ +  +  
Sbjct: 1555 FSKKQALLRYLSLYSTMMREGIFPDKLTFHSLILGLSKSGIPDLGVKLLGKMIMEGTLAD 1614

Query: 244  TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                NI +          +  +++ FM      PD  T N + NG  K     E+  VL+
Sbjct: 1615 QFTFNILINKYSESGKMRKAFDLVNFMNTLGVFPDRDTYNHIFNGLNKKSAFRESTVVLH 1674

Query: 304  DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            +M+      P    + T+I G+  VG IQ A  L  + M   G+    V  +A++RGL  
Sbjct: 1675 EMLENGV-IPKHAQYITLINGMCRVGDIQGAFKLKDE-MEALGFGSHEVAESAMVRGLLH 1732

Query: 364  LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
              + E+A  V + ML + ++    T+  ++   C   ++ EA +    +       D   
Sbjct: 1733 CGKTEDAMLVLDHMLRMRLLPTIATFTTLMHRFCRDAKIAEALKLKGVMELCGLKLDVVA 1792

Query: 424  YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
            Y  +I G+C +G    A     E+    + PNI  Y V++D     +   +  ++L +++
Sbjct: 1793 YNVLIMGMCANGDSAAAFELYEEMRHRDLCPNITTYAVLVDAISAANNLIQGEKLLTDLQ 1852

Query: 484  KNGLNPDAVTWRILDK 499
            + GL     + + LDK
Sbjct: 1853 ERGLISWGGSTQHLDK 1868



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 102/231 (44%), Gaps = 37/231 (16%)

Query: 276  QPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEAL 335
            +P V T N ++    K  R E    +  +M     C P+  TF  +I GL   G +++A 
Sbjct: 946  KPSVYTCNMILASMVKDKRTELVWSLFREMSDKGIC-PNVGTFNILINGLCVEGNLKKAG 1004

Query: 336  NLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG 395
            NLL Q M + G+ P IVTYN +L    +  R + A E+ + M+  G+ AD  TY + ID 
Sbjct: 1005 NLLKQ-MEENGFVPTIVTYNTLLNWYCKKGRYKAAIELIDYMICKGIEADVCTYNVFIDN 1063

Query: 396  LCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN 455
            LC ++                                RS K   A   L ++    ++PN
Sbjct: 1064 LCTNH--------------------------------RSAK---AYLLLKKMRKEMISPN 1088

Query: 456  IVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
             V YN +I+G  K      A Q+  EM K  L+P+ VT+  L   H + G+
Sbjct: 1089 EVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHVGD 1139



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 52/93 (55%)

Query: 1    MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
            M + C  +++ EA KL   M+  G   +VV+Y  LI G C  G+   A+++++EMRH  +
Sbjct: 1762 MHRFCRDAKIAEALKLKGVMELCGLKLDVVAYNVLIMGMCANGDSAAAFELYEEMRHRDL 1821

Query: 61   LPNSLTYSVLVRGVLRTRDVERANVLMFKLWER 93
             PN  TY+VLV  +    ++ +   L+  L ER
Sbjct: 1822 CPNITTYAVLVDAISAANNLIQGEKLLTDLQER 1854


>gi|242067038|ref|XP_002454808.1| hypothetical protein SORBIDRAFT_04g037860 [Sorghum bicolor]
 gi|241934639|gb|EES07784.1| hypothetical protein SORBIDRAFT_04g037860 [Sorghum bicolor]
          Length = 951

 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 145/560 (25%), Positives = 251/560 (44%), Gaps = 67/560 (11%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           EA  L+  M   G +P+VV+ + L+ G CR G+   AY +F EM   GV PN +TY  L+
Sbjct: 275 EAFSLYEGMVRSGVLPDVVTLSALVDGLCRDGQFSEAYALFREMDKIGVAPNHVTYCTLI 334

Query: 72  RGVLRTR-------------------DVERANVLMFKLWERMKEEE-----------DLS 101
             + + R                   D+     LM +L +  K EE           +++
Sbjct: 335 DSLAKARRGSESLGLLGEMVSRGVVMDLVMYTALMDRLGKEGKIEEAKDVLRHAQSDNIT 394

Query: 102 VNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRV 161
            N   +  LVD+ CR G ++   ++   M +   +        +I+ L + G    A+  
Sbjct: 395 PNFVTYTVLVDAHCRAGNIDGAEQVLLQMEEKSVIPNVVTFSSIINGLVKRGCLGKAADY 454

Query: 162 VYVMRKRGLTPSLVSY-----------------------------------NSIVHGLCK 186
           +  M+  G+ P++V+Y                                   +S+V+GL K
Sbjct: 455 MRKMKDSGIAPNVVTYGTLIDGFFKFQGQEAALDVYRDMLHEGVEANNFVVDSLVNGLRK 514

Query: 187 HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRI 246
           +G    A  L ++  + G L     Y  L++GL    ++  A KV Q ++ K       +
Sbjct: 515 NGNIEGAEALFKDMDERGLLLDHVNYTTLMDGLFKTGNMPAAFKVGQELMEKNLSPDAVV 574

Query: 247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV 306
            N+++  LC +   +E  + L  M  T  +PD  T NT+I   C+ G+  +ALK+L +M 
Sbjct: 575 YNVFINCLCTLGKFSEAKSFLKEMRNTGLEPDQATYNTMIAARCREGKTSKALKLLKEMK 634

Query: 307 AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 366
                 P+ +T+TT++ GLL  G +++A  LL + M   G++P  +T+  VL+     RR
Sbjct: 635 RNSI-KPNLITYTTLVVGLLEAGVVKKAKFLLNE-MASAGFAPTSLTHQRVLQACSGSRR 692

Query: 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAA 426
            +   E+   M+G G+ AD T Y  ++  LC       A    D+++      D   + A
Sbjct: 693 PDVILEIHELMMGAGLHADITVYNTLVHVLCCHGMARNATVVLDEMLTRGIAPDTITFNA 752

Query: 427 MIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG 486
           +I G C+S  +  A     +++  G++PNI  +N ++ G        EA  +L +M+K G
Sbjct: 753 LILGHCKSSHLDNAFAIYAQMLHQGLSPNIATFNTLLGGLESAGRIGEADTVLSDMKKVG 812

Query: 487 LNPDAVTWRILDKLHGNRGN 506
           L P+ +T+ IL   +  + N
Sbjct: 813 LEPNNLTYDILVTGYAKKSN 832



 Score =  188 bits (477), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 130/496 (26%), Positives = 231/496 (46%), Gaps = 7/496 (1%)

Query: 10  VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSV 69
           +G+A      MK  G  PNVV+Y TLI G+ +    + A  V+ +M H GV  N+     
Sbjct: 448 LGKAADYMRKMKDSGIAPNVVTYGTLIDGFFKFQGQEAALDVYRDMLHEGVEANNFVVDS 507

Query: 70  LVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAED 129
           LV G+ +  ++E A  L   + ER      L +++  +  L+D L + G +   F++ ++
Sbjct: 508 LVNGLRKNGNIEGAEALFKDMDER-----GLLLDHVNYTTLMDGLFKTGNMPAAFKVGQE 562

Query: 130 MPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG 189
           + +     +       I+ LC  G+   A   +  MR  GL P   +YN+++   C+ G 
Sbjct: 563 LMEKNLSPDAVVYNVFINCLCTLGKFSEAKSFLKEMRNTGLEPDQATYNTMIAARCREGK 622

Query: 190 CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNI 249
             +A +LL+E  +    P+  TY  LV GL     ++KA+ +L  M S      +     
Sbjct: 623 TSKALKLLKEMKRNSIKPNLITYTTLVVGLLEAGVVKKAKFLLNEMASAGFAPTSLTHQR 682

Query: 250 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK 309
            L+A    + P  +L +   M+      D+   NT+++  C  G    A  VL++M+  +
Sbjct: 683 VLQACSGSRRPDVILEIHELMMGAGLHADITVYNTLVHVLCCHGMARNATVVLDEMLT-R 741

Query: 310 FCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEE 369
             APD +TF  +I G      +  A  +  Q++ Q G SP I T+N +L GL    R+ E
Sbjct: 742 GIAPDTITFNALILGHCKSSHLDNAFAIYAQMLHQ-GLSPNIATFNTLLGGLESAGRIGE 800

Query: 370 AKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIK 429
           A  V + M  +G+  ++ TY I++ G  + +   EA R + ++V    I     Y +++ 
Sbjct: 801 ADTVLSDMKKVGLEPNNLTYDILVTGYAKKSNKVEALRLYCEMVSKGFIPKASTYNSLMS 860

Query: 430 GLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNP 489
              ++G +++A     E+   GV      Y+++++G  KL    E   +L++M++ G  P
Sbjct: 861 DFAKAGMMNQAKELFSEMKRRGVLHTSSTYDILLNGWSKLRNGIEVRILLKDMKELGFKP 920

Query: 490 DAVTWRILDKLHGNRG 505
              T   + +     G
Sbjct: 921 SKGTISSMSRAFSRPG 936



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 144/518 (27%), Positives = 245/518 (47%), Gaps = 18/518 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C +  +  A  +   M ++G   +VV Y +L+ G+  +G+ D A +V + M+  GV
Sbjct: 194 IDGYCKVQDMAAALAVVERMTTQGVALDVVGYNSLVAGFFHSGDADAALEVVERMKADGV 253

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +TY+ L+    + + ++ A    F L+E M     L  +    + LVD LCR+G  
Sbjct: 254 EPNVVTYTALIGEYCKGKGMDEA----FSLYEGMVRSGVLP-DVVTLSALVDGLCRDGQF 308

Query: 121 NEVFRIAEDMPQ-GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           +E + +  +M + G + N    C  +IDSL ++ R   +  ++  M  RG+   LV Y +
Sbjct: 309 SEAYALFREMDKIGVAPNHVTYC-TLIDSLAKARRGSESLGLLGEMVSRGVVMDLVMYTA 367

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++  L K G    A  +L         P+  TY VLV+  C   +++ A +VL  M  K 
Sbjct: 368 LMDRLGKEGKIEEAKDVLRHAQSDNITPNFVTYTVLVDAHCRAGNIDGAEQVLLQMEEKS 427

Query: 240 DVDR----TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 295
            +      + I N  ++  CL K      + +  M  +   P+V+T  T+I+GF K    
Sbjct: 428 VIPNVVTFSSIINGLVKRGCLGKAA----DYMRKMKDSGIAPNVVTYGTLIDGFFKFQGQ 483

Query: 296 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN 355
           E AL V  DM+     A + V   +++ GL   G I+ A   L++ M +RG     V Y 
Sbjct: 484 EAALDVYRDMLHEGVEANNFVV-DSLVNGLRKNGNIEGA-EALFKDMDERGLLLDHVNYT 541

Query: 356 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP 415
            ++ GLF+   +  A +V   ++   +  D+  Y + I+ LC   +  EAK F  ++   
Sbjct: 542 TLMDGLFKTGNMPAAFKVGQELMEKNLSPDAVVYNVFINCLCTLGKFSEAKSFLKEMRNT 601

Query: 416 SNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREA 475
               D   Y  MI   CR GK  +A+  L E+  + + PN++ Y  ++ G  +  + ++A
Sbjct: 602 GLEPDQATYNTMIAARCREGKTSKALKLLKEMKRNSIKPNLITYTTLVVGLLEAGVVKKA 661

Query: 476 YQILREMRKNGLNPDAVT-WRILDKLHGNRGNDFGLRI 512
             +L EM   G  P ++T  R+L    G+R  D  L I
Sbjct: 662 KFLLNEMASAGFAPTSLTHQRVLQACSGSRRPDVILEI 699



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 135/497 (27%), Positives = 234/497 (47%), Gaps = 11/497 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPN---VVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           LC    VGEA  L  +M  RG   +   VV +  LI GYC+  +M  A  V + M   GV
Sbjct: 160 LCRTGLVGEAAALA-EMLVRGRGIDGLDVVGWNALIDGYCKVQDMAAALAVVERMTTQGV 218

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             + + Y+ LV G   + D + A     ++ ERMK +  +  N   +  L+   C+   +
Sbjct: 219 ALDVVGYNSLVAGFFHSGDADAA----LEVVERMKAD-GVEPNVVTYTALIGEYCKGKGM 273

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E F + E M +   + +      ++D LCR G+   A  +   M K G+ P+ V+Y ++
Sbjct: 274 DEAFSLYEGMVRSGVLPDVVTLSALVDGLCRDGQFSEAYALFREMDKIGVAPNHVTYCTL 333

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +  L K      +  LL E +  G +     Y  L++ L  E  +E+A+ VL+   S   
Sbjct: 334 IDSLAKARRGSESLGLLGEMVSRGVVMDLVMYTALMDRLGKEGKIEEAKDVLRHAQSDNI 393

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                   + + A C   N      VL+ M +    P+V+T +++ING  K G + +A  
Sbjct: 394 TPNFVTYTVLVDAHCRAGNIDGAEQVLLQMEEKSVIPNVVTFSSIINGLVKRGCLGKAAD 453

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
            +  M      AP+ VT+ T+I G       + AL++ Y+ M   G        ++++ G
Sbjct: 454 YMRKMKDSGI-APNVVTYGTLIDGFFKFQGQEAALDV-YRDMLHEGVEANNFVVDSLVNG 511

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L +   +E A+ +F  M   G++ D   Y  ++DGL ++  +  A +   +++  +   D
Sbjct: 512 LRKNGNIEGAEALFKDMDERGLLLDHVNYTTLMDGLFKTGNMPAAFKVGQELMEKNLSPD 571

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
             VY   I  LC  GK  EA  FL E+ ++G+ P+   YN +I   C+     +A ++L+
Sbjct: 572 AVVYNVFINCLCTLGKFSEAKSFLKEMRNTGLEPDQATYNTMIAARCREGKTSKALKLLK 631

Query: 481 EMRKNGLNPDAVTWRIL 497
           EM++N + P+ +T+  L
Sbjct: 632 EMKRNSIKPNLITYTTL 648



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 103/431 (23%), Positives = 176/431 (40%), Gaps = 42/431 (9%)

Query: 13  AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVR 72
           A  LF DM  RG + + V+YTTL+ G  +TG M  A+KV  E+    + P+++ Y+V + 
Sbjct: 521 AEALFKDMDERGLLLDHVNYTTLMDGLFKTGNMPAAFKVGQELMEKNLSPDAVVYNVFIN 580

Query: 73  GVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQ 132
            +        A     K + +      L  + A +  ++ + CREG  ++  ++ ++M +
Sbjct: 581 CLCTLGKFSEA-----KSFLKEMRNTGLEPDQATYNTMIAARCREGKTSKALKLLKEMKR 635

Query: 133 GKS--------------------------VNEEFACGHMIDSL--------CRSGRNHGA 158
                                        +NE  + G    SL        C   R    
Sbjct: 636 NSIKPNLITYTTLVVGLLEAGVVKKAKFLLNEMASAGFAPTSLTHQRVLQACSGSRRPDV 695

Query: 159 SRVVY-VMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVE 217
              ++ +M   GL   +  YN++VH LC HG    A  +L+E +  G  P   T+  L+ 
Sbjct: 696 ILEIHELMMGAGLHADITVYNTLVHVLCCHGMARNATVVLDEMLTRGIAPDTITFNALIL 755

Query: 218 GLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQP 277
           G C  S L+ A  +   ML +         N  L  L       E   VL  M +   +P
Sbjct: 756 GHCKSSHLDNAFAIYAQMLHQGLSPNIATFNTLLGGLESAGRIGEADTVLSDMKKVGLEP 815

Query: 278 DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNL 337
           + +T + ++ G+ K     EAL++  +MV+  F  P A T+ +++      G + +A  L
Sbjct: 816 NNLTYDILVTGYAKKSNKVEALRLYCEMVSKGFI-PKASTYNSLMSDFAKAGMMNQAKEL 874

Query: 338 LYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLC 397
             + M +RG      TY+ +L G  +LR   E + +   M  +G      T + +     
Sbjct: 875 FSE-MKRRGVLHTSSTYDILLNGWSKLRNGIEVRILLKDMKELGFKPSKGTISSMSRAFS 933

Query: 398 ESNQLDEAKRF 408
                 EA+R 
Sbjct: 934 RPGMTGEARRL 944



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 116/229 (50%), Gaps = 2/229 (0%)

Query: 278 DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNL 337
           DV+  N +I+G+CK+  +  AL V+  M   +  A D V + +++ G  + G    AL +
Sbjct: 186 DVVGWNALIDGYCKVQDMAAALAVVERMTT-QGVALDVVGYNSLVAGFFHSGDADAALEV 244

Query: 338 LYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLC 397
           + + M   G  P +VTY A++    + + ++EA  ++  M+  GV+ D  T + ++DGLC
Sbjct: 245 VER-MKADGVEPNVVTYTALIGEYCKGKGMDEAFSLYEGMVRSGVLPDVVTLSALVDGLC 303

Query: 398 ESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIV 457
              Q  EA   + ++       ++  Y  +I  L ++ +  E++  L E+V  GV  ++V
Sbjct: 304 RDGQFSEAYALFREMDKIGVAPNHVTYCTLIDSLAKARRGSESLGLLGEMVSRGVVMDLV 363

Query: 458 CYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
            Y  ++D   K     EA  +LR  + + + P+ VT+ +L   H   GN
Sbjct: 364 MYTALMDRLGKEGKIEEAKDVLRHAQSDNITPNFVTYTVLVDAHCRAGN 412



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/259 (28%), Positives = 118/259 (45%), Gaps = 2/259 (0%)

Query: 248 NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA 307
           NI+L AL    +      VL  M +     D +T++T + G C+ G + EA  +   +V 
Sbjct: 119 NIFLAALSEQGHGRLAPPVLSEMCKRGVSWDGVTVSTALVGLCRTGLVGEAAALAEMLVR 178

Query: 308 GK-FCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 366
           G+     D V +  +I G   V  +  AL ++ + M  +G +  +V YN+++ G F    
Sbjct: 179 GRGIDGLDVVGWNALIDGYCKVQDMAAALAVVER-MTTQGVALDVVGYNSLVAGFFHSGD 237

Query: 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAA 426
            + A EV   M   GV  +  TY  +I   C+   +DEA   ++ +V    + D    +A
Sbjct: 238 ADAALEVVERMKADGVEPNVVTYTALIGEYCKGKGMDEAFSLYEGMVRSGVLPDVVTLSA 297

Query: 427 MIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG 486
           ++ GLCR G+  EA     E+   GV PN V Y  +ID   K     E+  +L EM   G
Sbjct: 298 LVDGLCRDGQFSEAYALFREMDKIGVAPNHVTYCTLIDSLAKARRGSESLGLLGEMVSRG 357

Query: 487 LNPDAVTWRILDKLHGNRG 505
           +  D V +  L    G  G
Sbjct: 358 VVMDLVMYTALMDRLGKEG 376



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 76/335 (22%), Positives = 143/335 (42%), Gaps = 38/335 (11%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C   +  +A KL  +MK     PN+++YTTL+ G    G +  A  + +EM   G  P S
Sbjct: 618 CREGKTSKALKLLKEMKRNSIKPNLITYTTLVVGLLEAGVVKKAKFLLNEMASAGFAPTS 677

Query: 65  LTYSVLVRGVLRTRDVERANVLM--FKLWERMKEEEDLSVNNA----------------- 105
           LT+  +++    +R   R +V++   +L        D++V N                  
Sbjct: 678 LTHQRVLQACSGSR---RPDVILEIHELMMGAGLHADITVYNTLVHVLCCHGMARNATVV 734

Query: 106 --------------AFANLVDSLCREGYVNEVFRI-AEDMPQGKSVNEEFACGHMIDSLC 150
                          F  L+   C+  +++  F I A+ + QG S N       ++  L 
Sbjct: 735 LDEMLTRGIAPDTITFNALILGHCKSSHLDNAFAIYAQMLHQGLSPNIA-TFNTLLGGLE 793

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
            +GR   A  V+  M+K GL P+ ++Y+ +V G  K    + A +L  E +  G++P   
Sbjct: 794 SAGRIGEADTVLSDMKKVGLEPNNLTYDILVTGYAKKSNKVEALRLYCEMVSKGFIPKAS 853

Query: 211 TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM 270
           TY  L+        + +A+++   M  +  +  +   +I L     ++N  E+  +L  M
Sbjct: 854 TYNSLMSDFAKAGMMNQAKELFSEMKRRGVLHTSSTYDILLNGWSKLRNGIEVRILLKDM 913

Query: 271 LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM 305
            +   +P   T++++   F + G   EA ++L  +
Sbjct: 914 KELGFKPSKGTISSMSRAFSRPGMTGEARRLLKTL 948


>gi|356529503|ref|XP_003533330.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 133/497 (26%), Positives = 242/497 (48%), Gaps = 11/497 (2%)

Query: 3   QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           Q   +  V +A   F  M    H P ++ +  ++  + +      A  +   +   G+ P
Sbjct: 33  QPPSIQNVDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQP 92

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           + +T ++L+        +     ++ K+ +R    + +++N      L+  LC +G V +
Sbjct: 93  DLITLNILINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNT-----LIKGLCLKGQVKK 147

Query: 123 VFRIAEDM-PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
                + +  QG  +N+  +   +I+ +C+ G   GA +++  +  R   P++  Y++I+
Sbjct: 148 ALHFHDKLLAQGFQLNQ-VSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTII 206

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
             LCK+     AY L  E    G      TY  L+ G C E  L++A  +L  M+ K   
Sbjct: 207 DALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTIN 266

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
                 NI + ALC      E  +VL  ML+   +PDVIT +T+++G+  +  +++A  V
Sbjct: 267 PNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHV 326

Query: 302 LNDM-VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
            N M + G    PD  T+T +I G      + EALNL ++ M Q+   PGIVTY++++ G
Sbjct: 327 FNAMSLMG--VTPDVHTYTILINGFCKNKMVDEALNL-FKEMHQKNMVPGIVTYSSLIDG 383

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L +  R+    ++ + M   G  AD  TY+ +IDGLC++  LD A   ++ +       +
Sbjct: 384 LCKSGRIPYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPN 443

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
            + +  ++ GLC+ G++ +A     +L+  G   N+  YNV+I+G CK  +  EA  +L 
Sbjct: 444 IFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLS 503

Query: 481 EMRKNGLNPDAVTWRIL 497
           +M  NG  P+A T+  +
Sbjct: 504 KMEDNGCIPNAFTFETI 520



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 128/491 (26%), Positives = 242/491 (49%), Gaps = 15/491 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D    +     A  L   ++ +G  P++++   LI+ +C  G++   + V  ++   G 
Sbjct: 66  LDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGFSVLAKILKRGY 125

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+++T + L++G+     V++A     KL       +   +N  ++A L++ +C+ G  
Sbjct: 126 PPDTVTLNTLIKGLCLKGQVKKALHFHDKLLA-----QGFQLNQVSYATLINGVCKIGDT 180

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
               ++   +    +         +ID+LC+      A  +   M  +G++  +V+Y+++
Sbjct: 181 RGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTL 240

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS--- 237
           ++G C  G    A  LL E +     P+ +TY +LV+ LC E  +++A+ VL  ML    
Sbjct: 241 IYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACV 300

Query: 238 KKDV-DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIE 296
           K DV   + + + Y   +  +K    + N +  M  T   PDV T   +INGFCK   ++
Sbjct: 301 KPDVITYSTLMDGYF-LVYEVKKAQHVFNAMSLMGVT---PDVHTYTILINGFCKNKMVD 356

Query: 297 EALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
           EAL +  +M   K   P  VT++++I GL   GRI    +L+ + M  RG    ++TY++
Sbjct: 357 EALNLFKEM-HQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDE-MRDRGQPADVITYSS 414

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416
           ++ GL +   ++ A  +FN M    +  +  T+ I++DGLC+  +L +A+  + D++   
Sbjct: 415 LIDGLCKNGHLDRAIALFNKMKDQEIRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKG 474

Query: 417 NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAY 476
              + Y Y  MI G C+ G + EA+  L ++ D+G  PN   +  +I    K     +A 
Sbjct: 475 YHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGCIPNAFTFETIIIALFKKDENDKAE 534

Query: 477 QILREMRKNGL 487
           ++LR+M   GL
Sbjct: 535 KLLRQMIARGL 545



 Score =  161 bits (408), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 103/434 (23%), Positives = 205/434 (47%), Gaps = 37/434 (8%)

Query: 107 FANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMR 166
           F  ++DS  +  + +    ++  +       +      +I+  C  G+      V+  + 
Sbjct: 62  FNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGFSVLAKIL 121

Query: 167 KRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLE 226
           KRG  P  V+ N+++ GLC  G   +A    ++ +  G+  ++ +Y  L+ G+C   D  
Sbjct: 122 KRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTR 181

Query: 227 KARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVI 286
            A K+L+ +  +       + +  + ALC  +  +E   +   M       DV+T +T+I
Sbjct: 182 GAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLI 241

Query: 287 NGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
            GFC  G+++EA+ +LN+MV  K   P+  T+  ++  L   G+++EA ++L  VM +  
Sbjct: 242 YGFCIEGKLKEAIGLLNEMVL-KTINPNVYTYNILVDALCKEGKVKEAKSVL-AVMLKAC 299

Query: 347 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
             P ++TY+ ++ G F +  V++A+ VFN M  +GV  D  TY I+I+G C++  +DEA 
Sbjct: 300 VKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEAL 359

Query: 407 RFWDDI---------------------------VWP--------SNIHDNYVYAAMIKGL 431
             + ++                           VW             D   Y+++I GL
Sbjct: 360 NLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMRDRGQPADVITYSSLIDGL 419

Query: 432 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 491
           C++G +  A+    ++ D  + PNI  + +++DG CK    ++A ++ +++   G + + 
Sbjct: 420 CKNGHLDRAIALFNKMKDQEIRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNV 479

Query: 492 VTWRILDKLHGNRG 505
            T+ ++   H  +G
Sbjct: 480 YTYNVMINGHCKQG 493


>gi|224123318|ref|XP_002319049.1| predicted protein [Populus trichocarpa]
 gi|222857425|gb|EEE94972.1| predicted protein [Populus trichocarpa]
          Length = 585

 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 130/473 (27%), Positives = 226/473 (47%), Gaps = 46/473 (9%)

Query: 27  PNVVSYTTLIHGYCRTGEMDV--AYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERAN 84
           PNV + T LI+  C +    V  A+    +M   G+ P  +T+  L+ G+     +  A 
Sbjct: 102 PNVYTLTILINCLCHSNRDHVHFAFSALGKMFKLGLQPTHVTFGTLLNGLCSKAKIIDA- 160

Query: 85  VLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGH 144
           V +F    +M     L      +  ++  LC+ G+     ++ + M +     +  A   
Sbjct: 161 VKLFDEIGKMGFAPSL----ITYTTIIKGLCKIGHTTNALQLLKKMEEKGCKPDVVAYNT 216

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
           +IDSLC+  R + A      M  +G+ P++V+Y+SI+HG C  G    A  L ++ I   
Sbjct: 217 VIDSLCKDRRANEAMYFFSEMVDQGIPPNVVTYSSILHGFCNLGQLNEATSLFKQMIGRN 276

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL 264
            +P+  T+ +LV+GLC E  + +AR+V + M                             
Sbjct: 277 VMPNTVTFTILVDGLCKEGMILEARRVFEMMT---------------------------- 308

Query: 265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 324
                  +   +PD  T + +++G+C   +++EA K+  D++ GK  AP    +  +I G
Sbjct: 309 -------ENGVEPDAYTYSALMDGYCLQSQMDEAQKLF-DIMVGKGFAPSVRVYNILING 360

Query: 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 384
                R+ EA  LL + M  R  +P  VTY+ +++G  +  R + A+++F  M   G++ 
Sbjct: 361 HCKSRRLNEAKTLLSE-MYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKLFKEMCSYGLLP 419

Query: 385 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY-VYAAMIKGLCRSGKIHEAVHF 443
           DS TY+I++DGLC+   LDEA R    +   S I  +  +Y  +I+G+C  GK+  A   
Sbjct: 420 DSITYSILLDGLCKHGHLDEAFRLLKAM-QESKIEPHICIYNILIQGMCNFGKLEAAREL 478

Query: 444 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRI 496
              L   G+ P++V Y V+I G  K  +  EA ++ R+M  NG  P++ T+ +
Sbjct: 479 FSNLFVKGIQPSVVTYTVMISGLLKEGLSNEACEMFRKMVVNGCLPNSCTYNV 531



 Score =  195 bits (495), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 123/460 (26%), Positives = 232/460 (50%), Gaps = 16/460 (3%)

Query: 6   GLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSL 65
             S +G+  KL       G  P  V++ TL++G C   ++  A K+FDE+   G  P+ +
Sbjct: 125 AFSALGKMFKL-------GLQPTHVTFGTLLNGLCSKAKIIDAVKLFDEIGKMGFAPSLI 177

Query: 66  TYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE-VF 124
           TY+ +++G+ +      A     +L ++M EE+    +  A+  ++DSLC++   NE ++
Sbjct: 178 TYTTIIKGLCKIGHTTNA----LQLLKKM-EEKGCKPDVVAYNTVIDSLCKDRRANEAMY 232

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
             +E + QG   N       ++   C  G+ + A+ +   M  R + P+ V++  +V GL
Sbjct: 233 FFSEMVDQGIPPNV-VTYSSILHGFCNLGQLNEATSLFKQMIGRNVMPNTVTFTILVDGL 291

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
           CK G  + A ++ E   + G  P  +TY  L++G C +S +++A+K+   M+ K      
Sbjct: 292 CKEGMILEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIMVGKGFAPSV 351

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
           R+ NI +   C  +   E   +L  M      PD +T +T++ GFC+ GR + A K+  +
Sbjct: 352 RVYNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKLFKE 411

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
           M +     PD++T++ ++ GL   G + EA  LL + M +    P I  YN +++G+   
Sbjct: 412 MCSYGL-LPDSITYSILLDGLCKHGHLDEAFRLL-KAMQESKIEPHICIYNILIQGMCNF 469

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY 424
            ++E A+E+F+ +   G+     TY ++I GL +    +EA   +  +V    + ++  Y
Sbjct: 470 GKLEAARELFSNLFVKGIQPSVVTYTVMISGLLKEGLSNEACEMFRKMVVNGCLPNSCTY 529

Query: 425 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
              I+G  R+G    AV  + E+V  G + +   + +++D
Sbjct: 530 NVAIQGFLRNGDPSNAVRLIEEMVGRGFSADSSTFQMLLD 569



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 108/393 (27%), Positives = 206/393 (52%), Gaps = 4/393 (1%)

Query: 107 FANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNH--GASRVVYV 164
           F  L+ SL ++ + + V  + + M         +    +I+ LC S R+H   A   +  
Sbjct: 72  FNKLLGSLVKKKHYSTVISLCKQMDLSNIRPNVYTLTILINCLCHSNRDHVHFAFSALGK 131

Query: 165 MRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESD 224
           M K GL P+ V++ ++++GLC     + A +L +E  + G+ PS  TY  +++GLC    
Sbjct: 132 MFKLGLQPTHVTFGTLLNGLCSKAKIIDAVKLFDEIGKMGFAPSLITYTTIIKGLCKIGH 191

Query: 225 LEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNT 284
              A ++L+ M  K         N  + +LC  +   E +     M+     P+V+T ++
Sbjct: 192 TTNALQLLKKMEEKGCKPDVVAYNTVIDSLCKDRRANEAMYFFSEMVDQGIPPNVVTYSS 251

Query: 285 VINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ 344
           +++GFC +G++ EA  +   M+ G+   P+ VTFT ++ GL   G I EA  + +++M +
Sbjct: 252 ILHGFCNLGQLNEATSLFKQMI-GRNVMPNTVTFTILVDGLCKEGMILEARRV-FEMMTE 309

Query: 345 RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 404
            G  P   TY+A++ G     +++EA+++F+ M+G G       Y I+I+G C+S +L+E
Sbjct: 310 NGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIMVGKGFAPSVRVYNILINGHCKSRRLNE 369

Query: 405 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
           AK    ++       D   Y+ +++G C++G+   A     E+   G+ P+ + Y++++D
Sbjct: 370 AKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKLFKEMCSYGLLPDSITYSILLD 429

Query: 465 GACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           G CK     EA+++L+ M+++ + P    + IL
Sbjct: 430 GLCKHGHLDEAFRLLKAMQESKIEPHICIYNIL 462



 Score =  164 bits (416), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 113/397 (28%), Positives = 186/397 (46%), Gaps = 9/397 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC +     A +L   M+ +G  P+VV+Y T+I   C+    + A   F EM   G+ PN
Sbjct: 186 LCKIGHTTNALQLLKKMEEKGCKPDVVAYNTVIDSLCKDRRANEAMYFFSEMVDQGIPPN 245

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TYS ++ G      +  A  L  ++  R     ++  N   F  LVD LC+EG + E 
Sbjct: 246 VVTYSSILHGFCNLGQLNEATSLFKQMIGR-----NVMPNTVTFTILVDGLCKEGMILEA 300

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            R+ E M +     + +    ++D  C   +   A ++  +M  +G  PS+  YN +++G
Sbjct: 301 RRVFEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIMVGKGFAPSVRVYNILING 360

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK      A  LL E       P   TY  L++G C     + A+K+ + M S   +  
Sbjct: 361 HCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKLFKEMCSYGLLPD 420

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
           +   +I L  LC   +  E   +L  M +++ +P +   N +I G C  G++E A ++ +
Sbjct: 421 SITYSILLDGLCKHGHLDEAFRLLKAMQESKIEPHICIYNILIQGMCNFGKLEAARELFS 480

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           ++   K   P  VT+T +I GLL  G   EA   +++ M   G  P   TYN  ++G  R
Sbjct: 481 NLFV-KGIQPSVVTYTVMISGLLKEGLSNEACE-MFRKMVVNGCLPNSCTYNVAIQGFLR 538

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN 400
                 A  +   M+G G  ADS+T+ +++D   ESN
Sbjct: 539 NGDPSNAVRLIEEMVGRGFSADSSTFQMLLD--LESN 573



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/199 (22%), Positives = 77/199 (38%), Gaps = 46/199 (23%)

Query: 348 SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI--------------------------- 380
           SP  +T          L  V +A   FN +LGI                           
Sbjct: 31  SPSSITNGGFCSNYNNLHSVADAVASFNQLLGIRPLPPVVVFNKLLGSLVKKKHYSTVIS 90

Query: 381 --------GVVADSTTYAIVIDGLCESNQ------LDEAKRFWDDIVWPSNIHDNYVYAA 426
                    +  +  T  I+I+ LC SN+           + +   + P+++     +  
Sbjct: 91  LCKQMDLSNIRPNVYTLTILINCLCHSNRDHVHFAFSALGKMFKLGLQPTHV----TFGT 146

Query: 427 MIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG 486
           ++ GLC   KI +AV    E+   G  P+++ Y  +I G CK+     A Q+L++M + G
Sbjct: 147 LLNGLCSKAKIIDAVKLFDEIGKMGFAPSLITYTTIIKGLCKIGHTTNALQLLKKMEEKG 206

Query: 487 LNPDAVTWR-ILDKLHGNR 504
             PD V +  ++D L  +R
Sbjct: 207 CKPDVVAYNTVIDSLCKDR 225


>gi|413922209|gb|AFW62141.1| hypothetical protein ZEAMMB73_911481 [Zea mays]
          Length = 700

 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 134/498 (26%), Positives = 243/498 (48%), Gaps = 26/498 (5%)

Query: 4   LCGLSRVG---EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           + GL R G   +A K+F +M   G  PN ++Y T+I G+ + G+++  +++ D+M H G 
Sbjct: 201 IAGLWRSGKGSDALKVFDEMVDMGVAPNRITYNTMIDGHVKGGDLEAGFRLRDQMLHDGP 260

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +TY+VL+ G+ RT  ++    LM ++         +  +   ++ L D L R G  
Sbjct: 261 KPNVVTYNVLLSGLCRTGRMDETRALMDEM-----ASHSMLPDGFTYSILFDGLTRTGES 315

Query: 121 NEVFRI-AEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
             +  + AE + +G  +   + C  +++ LC+ G+   A +V  ++   GL P+ V YN+
Sbjct: 316 QTMLSLFAESLKKGVMLG-AYTCSILLNGLCKDGKVAKAKQVFEMLVHTGLVPTTVIYNT 374

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           +++G C+      A+ + E+       P   TY  L+ GLC    + KA  ++  M  K 
Sbjct: 375 LINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEM-EKS 433

Query: 240 DVDRT-RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
            VD +    N  + A        +   VL  M Q   + DVI+  +V+  FCK G+I EA
Sbjct: 434 GVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEA 493

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
           + +L+DM+  K  AP+A  + +II   +  G  ++AL LL + M   G S  IVTYN +L
Sbjct: 494 VAILDDMIY-KDVAPNAQVYNSIIDAYIESGDTEQAL-LLVEKMKNSGVSASIVTYNLLL 551

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI----VW 414
           +GL R  +++EA+E+   +   G+  D  +Y  +I   C     D+A     ++    + 
Sbjct: 552 KGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIR 611

Query: 415 PS--NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMK 472
           P+    H       ++  L  +G++H+      +++   V P+   Y +++D   +    
Sbjct: 612 PTLRTCH------TLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYVRCEND 665

Query: 473 REAYQILREMRKNGLNPD 490
            +   + +EM + G+  D
Sbjct: 666 SKVASLKKEMSEKGIAFD 683



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 115/499 (23%), Positives = 227/499 (45%), Gaps = 9/499 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEM-RHCG 59
           ++ L  + R  +    F  + + G  P+  ++  ++      G++DVA  +   M R  G
Sbjct: 129 LESLLFVGRHADVRAAFGLLVAAGARPDTFAWNKVVQACVAAGDLDVALAMLRRMGRSEG 188

Query: 60  VLP-NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREG 118
             P ++ +Y+V++ G+ R+     A     K+++ M +   ++ N   +  ++D   + G
Sbjct: 189 APPPDAFSYNVVIAGLWRSGKGSDA----LKVFDEMVDM-GVAPNRITYNTMIDGHVKGG 243

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
            +   FR+ + M              ++  LCR+GR      ++  M    + P   +Y+
Sbjct: 244 DLEAGFRLRDQMLHDGPKPNVVTYNVLLSGLCRTGRMDETRALMDEMASHSMLPDGFTYS 303

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
            +  GL + G       L  E ++ G +   +T  +L+ GLC +  + KA++V + ++  
Sbjct: 304 ILFDGLTRTGESQTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAKQVFEMLVHT 363

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
             V  T I N  +   C +++      +   M     +PD IT N +ING CK+  + +A
Sbjct: 364 GLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKA 423

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
             ++ +M       P   TF T+I      G++++   +L   M Q+G    ++++ +V+
Sbjct: 424 EDLVMEMEKSGV-DPSVETFNTLIDAYGTAGQLEKCFTVLSD-MQQKGIKSDVISFGSVV 481

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
           +   +  ++ EA  + + M+   V  ++  Y  +ID   ES   ++A    + +      
Sbjct: 482 KAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQALLLVEKMKNSGVS 541

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI 478
                Y  ++KGLCRS +I EA   +Y L + G+ P++V YN +I   C      +A ++
Sbjct: 542 ASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALEL 601

Query: 479 LREMRKNGLNPDAVTWRIL 497
           L+EM K G+ P   T   L
Sbjct: 602 LQEMNKYGIRPTLRTCHTL 620



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 112/482 (23%), Positives = 218/482 (45%), Gaps = 7/482 (1%)

Query: 26  VPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANV 85
           +P++ S   L+      G        F  +   G  P++  ++ +V+  +   D++ A  
Sbjct: 119 LPSLSSCNLLLESLLFVGRHADVRAAFGLLVAAGARPDTFAWNKVVQACVAAGDLDVA-- 176

Query: 86  LMFKLWERMKEEEDLSVNNAAFANLV-DSLCREGYVNEVFRIAEDMPQGKSVNEEFACGH 144
               +  RM   E     +A   N+V   L R G  ++  ++ ++M              
Sbjct: 177 --LAMLRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVAPNRITYNT 234

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
           MID   + G      R+   M   G  P++V+YN ++ GLC+ G       L++E     
Sbjct: 235 MIDGHVKGGDLEAGFRLRDQMLHDGPKPNVVTYNVLLSGLCRTGRMDETRALMDEMASHS 294

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL 264
            LP   TY +L +GL    + +    +    L K  +     C+I L  LC      +  
Sbjct: 295 MLPDGFTYSILFDGLTRTGESQTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAK 354

Query: 265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 324
            V   ++ T   P  +  NT+ING+C++  +  A  +   M + +   PD +T+  +I G
Sbjct: 355 QVFEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKS-RHIRPDHITYNALING 413

Query: 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 384
           L  +  + +A +L+ + M + G  P + T+N ++       ++E+   V + M   G+ +
Sbjct: 414 LCKLEMVTKAEDLVME-MEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKS 472

Query: 385 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFL 444
           D  ++  V+   C++ ++ EA    DD+++     +  VY ++I     SG   +A+  +
Sbjct: 473 DVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQALLLV 532

Query: 445 YELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNR 504
            ++ +SGV+ +IV YN+++ G C+ S   EA +++  +R  GL PD V++  +     N+
Sbjct: 533 EKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNK 592

Query: 505 GN 506
           G+
Sbjct: 593 GD 594


>gi|255547572|ref|XP_002514843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545894|gb|EEF47397.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 594

 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 129/494 (26%), Positives = 239/494 (48%), Gaps = 77/494 (15%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC L  VG    +   +   G  P+++++ TLI+G C  G +  A +  D +   G  P 
Sbjct: 149 LCHLHLVGLGFSVLGKIFKLGFKPSIITFNTLINGLCIEGRIVEAMEQLDYIMSRGYQPT 208

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             T++++V G+ +      A V M K+ E   E E +S     ++ ++DSLC        
Sbjct: 209 VYTHTMIVNGLCKIGKTSAAIVWMKKMVELDCEPEVVS-----YSIIIDSLC-------- 255

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
                   + + VNE                   A  + Y MR  G++P++V+YNS+++G
Sbjct: 256 --------KNRLVNE-------------------AVDLFYHMRSIGISPTVVTYNSLIYG 288

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           +C  G   +A  L +E +++   P   T+ +LV+ LC E  + +A               
Sbjct: 289 MCNSGQWKQASILFKEMLEWNMKPDVVTFSILVDALCKEGVVLEA--------------- 333

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                               L+V   M+Q   +PD++T +++I+G CK    +E+  +LN
Sbjct: 334 --------------------LSVFGKMIQIAMEPDIVTYSSLIHGVCKSSLWKESSTLLN 373

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           +M++     PD VTF+  +      G + EA +++  +M +RG  P +VTYN+++ G   
Sbjct: 374 EMLSRNI-RPDVVTFSIWVDVFCKKGMVSEAQSII-NLMIERGLRPNVVTYNSLMDGYCL 431

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
             +++EA++VF+ M+  G   D  +Y I+I G C+S ++DEAK+ +D++       ++  
Sbjct: 432 HSQMDEARKVFDIMVNKGCAPDVLSYNILIKGYCKSERIDEAKQLFDEMSHKGLTPNSIT 491

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           +  +I GLC++G+ + A     ++   G  P+++ Y+ ++ G CK     EA  +   ++
Sbjct: 492 HTTLISGLCQAGRPYAAKELFKKMGSHGCPPDLITYSTLLSGFCKHGHLDEALALFEALK 551

Query: 484 KNGLNPDAVTWRIL 497
           K+ L P+ V  +IL
Sbjct: 552 KSQLKPNHVICKIL 565



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 94/393 (23%), Positives = 190/393 (48%), Gaps = 37/393 (9%)

Query: 107 FANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMR 166
           F  L+ +L R  + + V  I   M         +    +I+ LC          V+  + 
Sbjct: 107 FNQLLAALVRMKHYDSVVSIYRKMEFFGVSCSVYTLTILINCLCHLHLVGLGFSVLGKIF 166

Query: 167 KRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLE 226
           K G  PS++++N++++GLC  G  + A + L+  +  GY P+ +T+ ++V GLC      
Sbjct: 167 KLGFKPSIITFNTLINGLCIEGRIVEAMEQLDYIMSRGYQPTVYTHTMIVNGLC------ 220

Query: 227 KARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVI 286
                         + +T    ++++                 M++  C+P+V++ + +I
Sbjct: 221 -------------KIGKTSAAIVWMKK----------------MVELDCEPEVVSYSIII 251

Query: 287 NGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
           +  CK   + EA+ +   M +    +P  VT+ ++I+G+ N G+ ++A ++L++ M +  
Sbjct: 252 DSLCKNRLVNEAVDLFYHMRSIGI-SPTVVTYNSLIYGMCNSGQWKQA-SILFKEMLEWN 309

Query: 347 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
             P +VT++ ++  L +   V EA  VF  M+ I +  D  TY+ +I G+C+S+   E+ 
Sbjct: 310 MKPDVVTFSILVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSSLWKESS 369

Query: 407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466
              ++++  +   D   ++  +   C+ G + EA   +  +++ G+ PN+V YN ++DG 
Sbjct: 370 TLLNEMLSRNIRPDVVTFSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSLMDGY 429

Query: 467 CKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
           C  S   EA ++   M   G  PD +++ IL K
Sbjct: 430 CLHSQMDEARKVFDIMVNKGCAPDVLSYNILIK 462



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 87/338 (25%), Positives = 164/338 (48%), Gaps = 6/338 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    V EA  LF+ M+S G  P VV+Y +LI+G C +G+   A  +F EM    +
Sbjct: 251 IDSLCKNRLVNEAVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASILFKEMLEWNM 310

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +T+S+LV  + +   V  A  +  K+ +   E + ++     +++L+  +C+    
Sbjct: 311 KPDVVTFSILVDALCKEGVVLEALSVFGKMIQIAMEPDIVT-----YSSLIHGVCKSSLW 365

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E   +  +M       +       +D  C+ G    A  ++ +M +RGL P++V+YNS+
Sbjct: 366 KESSTLLNEMLSRNIRPDVVTFSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSL 425

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G C H     A ++ +  +  G  P   +Y +L++G C    +++A+++   M  K  
Sbjct: 426 MDGYCLHSQMDEARKVFDIMVNKGCAPDVLSYNILIKGYCKSERIDEAKQLFDEMSHKGL 485

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
              +      +  LC    P     +   M    C PD+IT +T+++GFCK G ++EAL 
Sbjct: 486 TPNSITHTTLISGLCQAGRPYAAKELFKKMGSHGCPPDLITYSTLLSGFCKHGHLDEALA 545

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLL 338
           +   +   +   P+ V    ++ G+   G++++A  L 
Sbjct: 546 LFEALKKSQL-KPNHVICKILLGGMCKAGKLEDAKELF 582



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 70/282 (24%), Positives = 130/282 (46%), Gaps = 11/282 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    V EA  +F  M      P++V+Y++LIHG C++     +  + +EM    +
Sbjct: 321 VDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSSLWKESSTLLNEMLSRNI 380

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +T+S+ V    +   V  A  ++  + ER      L  N   + +L+D  C    +
Sbjct: 381 RPDVVTFSIWVDVFCKKGMVSEAQSIINLMIER-----GLRPNVVTYNSLMDGYCLHSQM 435

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E  ++ + M       +  +   +I   C+S R   A ++   M  +GLTP+ +++ ++
Sbjct: 436 DEARKVFDIMVNKGCAPDVLSYNILIKGYCKSERIDEAKQLFDEMSHKGLTPNSITHTTL 495

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GLC+ G    A +L ++    G  P   TY  L+ G C    L++A  + + +   + 
Sbjct: 496 ISGLCQAGRPYAAKELFKKMGSHGCPPDLITYSTLLSGFCKHGHLDEALALFEALKKSQL 555

Query: 241 VDRTRICNIYLRALC---LIKNPTELLNVLVFMLQTQCQPDV 279
                IC I L  +C    +++  EL + L      + QPDV
Sbjct: 556 KPNHVICKILLGGMCKAGKLEDAKELFSSLSI---EELQPDV 594


>gi|224145304|ref|XP_002336216.1| predicted protein [Populus trichocarpa]
 gi|222832672|gb|EEE71149.1| predicted protein [Populus trichocarpa]
          Length = 616

 Score =  195 bits (495), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 129/487 (26%), Positives = 226/487 (46%), Gaps = 42/487 (8%)

Query: 7   LSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLT 66
           L RV     +   +   G    +V++ TLI+G C+ G+   A ++FD+M   G  P+  T
Sbjct: 170 LQRVDLGFSVLAKIIKLGLQLTIVTFNTLINGLCKVGKFGQAVELFDDMVARGYQPDVHT 229

Query: 67  YSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRI 126
           Y+ ++ G+ +  +   A  L  K+ E                    + C+   V      
Sbjct: 230 YTTIINGLCKIGETVAAAGLFRKMGE--------------------AGCQPDVVTY---- 265

Query: 127 AEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK 186
                             +IDSLC+  R + A  +   M+ +G++P++ +YNS++ GLC 
Sbjct: 266 ----------------STIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCN 309

Query: 187 HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRI 246
                 A  +L E +    +P+  T+ +L+   C E ++ +AR VL+ M           
Sbjct: 310 FSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVT 369

Query: 247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV 306
            +  +    L     E   +   M+   C+PDV + N +ING+CK  RI EA ++ N+M+
Sbjct: 370 YSSLMNGYSLQAEVVEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMI 429

Query: 307 AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 366
                 PD V++ T+I GL  +GR++EA +L ++ M   G  P + TY+ +L G  +   
Sbjct: 430 HQGL-TPDIVSYNTLIDGLCQLGRLREAHDL-FKNMLTNGNLPDLCTYSILLDGFCKQGY 487

Query: 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAA 426
           + +A  +F  M    +  +   Y I+ID +C+S  L EA++ + ++       +  +Y  
Sbjct: 488 LAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQPNVQIYTT 547

Query: 427 MIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG 486
           +I GLC+ G + EA+     + + G  PN   YNV+I G  +   +  A Q++ EMR+ G
Sbjct: 548 IINGLCKEGLLDEALEAFRNMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQLIGEMREKG 607

Query: 487 LNPDAVT 493
              D  T
Sbjct: 608 FVADVAT 614



 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 125/489 (25%), Positives = 230/489 (47%), Gaps = 8/489 (1%)

Query: 10  VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEM-DVAYKVFDEMRHCGVLPNSLTYS 68
           + +A   F  M  R   P ++ +  L+    +     D    +  +M   G+ P++ T  
Sbjct: 102 IDDALAYFNHMLHRKPRPCIIQFNKLLSAIVKMRHYHDAVISLSKQMELAGLSPDTYTLH 161

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
           +L+    + + V+    ++ K+ +       L +    F  L++ LC+ G   +   + +
Sbjct: 162 MLINCFFQLQRVDLGFSVLAKIIKL-----GLQLTIVTFNTLINGLCKVGKFGQAVELFD 216

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
           DM       +      +I+ LC+ G    A+ +   M + G  P +V+Y++I+  LCK  
Sbjct: 217 DMVARGYQPDVHTYTTIINGLCKIGETVAAAGLFRKMGEAGCQPDVVTYSTIIDSLCKDR 276

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
               A  +       G  P+  TY  L++GLC  S   +A  +L  M+S   +      +
Sbjct: 277 RVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFS 336

Query: 249 IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 308
           + +   C   N  E   VL  M +   +P+V+T ++++NG+     + EA K+ + M+  
Sbjct: 337 LLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEARKLFDVMIT- 395

Query: 309 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE 368
           K C PD  ++  +I G     RI EA  L  +++ Q G +P IV+YN ++ GL +L R+ 
Sbjct: 396 KGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQ-GLTPDIVSYNTLIDGLCQLGRLR 454

Query: 369 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI 428
           EA ++F  ML  G + D  TY+I++DG C+   L +A R +  +       +  +Y  +I
Sbjct: 455 EAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILI 514

Query: 429 KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLN 488
             +C+S  + EA     EL   G+ PN+  Y  +I+G CK  +  EA +  R M ++G  
Sbjct: 515 DAMCKSRNLKEARKLFSELFVQGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEEDGCP 574

Query: 489 PDAVTWRIL 497
           P+  ++ ++
Sbjct: 575 PNEFSYNVI 583



 Score =  151 bits (381), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 112/420 (26%), Positives = 191/420 (45%), Gaps = 32/420 (7%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC + + G+A +LF DM +RG+ P+V +YTT+I+G C+ GE   A  +F +M   G 
Sbjct: 199 INGLCKVGKFGQAVELFDDMVARGYQPDVHTYTTIINGLCKIGETVAAAGLFRKMGEAGC 258

Query: 61  LPNSLTYSVLVRGVLRTRDVERA-------------------NVLM-----FKLWER--- 93
            P+ +TYS ++  + + R V  A                   N L+     F  W     
Sbjct: 259 QPDVVTYSTIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASA 318

Query: 94  -MKEEEDLSV--NNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC 150
            + E   L++  N   F+ L++  C+EG V E   + + M +            +++   
Sbjct: 319 MLNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYS 378

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
                  A ++  VM  +G  P + SYN +++G CK      A QL  E I  G  P   
Sbjct: 379 LQAEVVEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIV 438

Query: 211 TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM 270
           +Y  L++GLC    L +A  + + ML+  ++      +I L   C      +   +   M
Sbjct: 439 SYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAM 498

Query: 271 LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR 330
             T  +P+++  N +I+  CK   ++EA K+ +++       P+   +TTII GL   G 
Sbjct: 499 QSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGL-QPNVQIYTTIINGLCKEGL 557

Query: 331 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYA 390
           + EAL   ++ M + G  P   +YN ++RG  + +    A ++   M   G VAD  T A
Sbjct: 558 LDEALEA-FRNMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQLIGEMREKGFVADVATTA 616



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 123/255 (48%), Gaps = 1/255 (0%)

Query: 257 IKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAV 316
            +N  + L     ML  + +P +I  N +++   KM    +A+  L+  +     +PD  
Sbjct: 99  FRNIDDALAYFNHMLHRKPRPCIIQFNKLLSAIVKMRHYHDAVISLSKQMELAGLSPDTY 158

Query: 317 TFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNC 376
           T   +I     + R+    ++L +++ + G    IVT+N ++ GL ++ +  +A E+F+ 
Sbjct: 159 TLHMLINCFFQLQRVDLGFSVLAKII-KLGLQLTIVTFNTLINGLCKVGKFGQAVELFDD 217

Query: 377 MLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGK 436
           M+  G   D  TY  +I+GLC+  +   A   +  +       D   Y+ +I  LC+  +
Sbjct: 218 MVARGYQPDVHTYTTIINGLCKIGETVAAAGLFRKMGEAGCQPDVVTYSTIIDSLCKDRR 277

Query: 437 IHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRI 496
           ++EA+     +   G++PNI  YN +I G C  S  REA  +L EM    + P+ VT+ +
Sbjct: 278 VNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSL 337

Query: 497 LDKLHGNRGNDFGLR 511
           L  +    GN F  R
Sbjct: 338 LINIFCKEGNVFEAR 352


>gi|357521289|ref|XP_003630933.1| Tau class glutathione S-transferase [Medicago truncatula]
 gi|355524955|gb|AET05409.1| Tau class glutathione S-transferase [Medicago truncatula]
          Length = 1320

 Score =  195 bits (495), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 135/503 (26%), Positives = 245/503 (48%), Gaps = 42/503 (8%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC L +V EAH L   M  RG+ P+VVSY  ++ GYCR GE+D   K+ DE++  G+ P+
Sbjct: 252 LCQLGKVREAHNLLVQMTDRGNFPDVVSYGVVVSGYCRIGELDKVLKLVDELKGKGLKPD 311

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
              Y+ ++  + +  +V  A  L+     R   +  +  +N  +  ++   C+ G V+  
Sbjct: 312 EYIYNNIILLLCKNGEVVEAEQLL-----RGMRKWGVFPDNVVYTTVISGFCKLGNVSAA 366

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            ++ ++M + K V +      +I  +C+SG+   A  +   M  +GL P  V+Y +++ G
Sbjct: 367 CKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNEMLVKGLEPDEVTYTALIDG 426

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK G    A+ +  + +Q G  P+  TY  L +GLC   +++ A ++L  M S+K +  
Sbjct: 427 YCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGEIDVANELLHEM-SRKGL-- 483

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                                           QP+V T NT++NG CK+G IE+ +K++ 
Sbjct: 484 --------------------------------QPNVYTYNTIVNGLCKIGNIEQTVKLME 511

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           +M    F  PD +T+TT++     +G + +A  LL ++M  +   P +VT+N ++ G   
Sbjct: 512 EMDLAGF-YPDTITYTTLMDAYCKMGEMAKAHELL-RIMLNKRLQPTLVTFNVLMNGFCM 569

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
              +E+ + +   ML  G++ ++TT+  ++   C  N +      +  +     + D+  
Sbjct: 570 SGMLEDGERLIEWMLEKGIMPNATTFNSLMKQYCIKNNMRATTEIYKAMHDRGVMPDSNT 629

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y  +IKG C++  + EA     E+V+ G +     Y+ +I G  K     EA ++  EMR
Sbjct: 630 YNILIKGHCKARNMKEAWFLHKEMVEKGYSVTAATYDALIRGFYKRKKFVEARKLFEEMR 689

Query: 484 KNGLNPDAVTWRILDKLHGNRGN 506
           K+GL  +   + I   ++   GN
Sbjct: 690 KHGLVAEKDIYDIFVDVNYEEGN 712



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 125/495 (25%), Positives = 232/495 (46%), Gaps = 47/495 (9%)

Query: 10  VGEAHKLFFDMKSRGHVPNVVSYTTLIHGY-CRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           V EA KLF  +   G V +V S    +    C    + +A KVF+E    GV  N+++ +
Sbjct: 187 VLEAQKLFHKLLRYGVVVSVDSCNLFLSRLSCNFEGIKIAVKVFEEFPELGVCWNTVSCN 246

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
           +++  + +   V  A+ L+ ++ +R    + +S             CR G +++V ++ +
Sbjct: 247 IVLHCLCQLGKVREAHNLLVQMTDRGNFPDVVSYGVVV-----SGYCRIGELDKVLKLVD 301

Query: 129 DMPQGKSVN-EEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKH 187
           ++ +GK +  +E+   ++I  LC++G    A +++  MRK G+ P  V Y +++ G CK 
Sbjct: 302 EL-KGKGLKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDNVVYTTVISGFCKL 360

Query: 188 GGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC 247
           G    A +L +E  +   +P   TY  ++ G+C    + +AR++   ML K         
Sbjct: 361 GNVSAACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNEMLVKG-------- 412

Query: 248 NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA 307
                                       +PD +T   +I+G+CK G ++EA  V N MV 
Sbjct: 413 ---------------------------LEPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQ 445

Query: 308 GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRV 367
            K   P+ VT+T +  GL   G I  A  LL++ M ++G  P + TYN ++ GL ++  +
Sbjct: 446 -KGLTPNVVTYTALADGLCKNGEIDVANELLHE-MSRKGLQPNVYTYNTIVNGLCKIGNI 503

Query: 368 EEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV-YAA 426
           E+  ++   M   G   D+ TY  ++D  C+  ++ +A      I+    +    V +  
Sbjct: 504 EQTVKLMEEMDLAGFYPDTITYTTLMDAYCKMGEMAKAHELLR-IMLNKRLQPTLVTFNV 562

Query: 427 MIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG 486
           ++ G C SG + +    +  +++ G+ PN   +N ++   C  +  R   +I + M   G
Sbjct: 563 LMNGFCMSGMLEDGERLIEWMLEKGIMPNATTFNSLMKQYCIKNNMRATTEIYKAMHDRG 622

Query: 487 LNPDAVTWRILDKLH 501
           + PD+ T+ IL K H
Sbjct: 623 VMPDSNTYNILIKGH 637



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/305 (22%), Positives = 133/305 (43%), Gaps = 40/305 (13%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C    + EA  +   M  +G  PNVV+YT L  G C+ GE+DVA ++  EM   G+
Sbjct: 424 IDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGEIDVANELLHEMSRKGL 483

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN  TY+ +V G                                        LC+ G +
Sbjct: 484 QPNVYTYNTIVNG----------------------------------------LCKIGNI 503

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +  ++ E+M       +      ++D+ C+ G    A  ++ +M  + L P+LV++N +
Sbjct: 504 EQTVKLMEEMDLAGFYPDTITYTTLMDAYCKMGEMAKAHELLRIMLNKRLQPTLVTFNVL 563

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++G C  G      +L+E  ++ G +P+  T+  L++  C ++++    ++ + M  +  
Sbjct: 564 MNGFCMSGMLEDGERLIEWMLEKGIMPNATTFNSLMKQYCIKNNMRATTEIYKAMHDRGV 623

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           +  +   NI ++  C  +N  E   +   M++        T + +I GF K  +  EA K
Sbjct: 624 MPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKGYSVTAATYDALIRGFYKRKKFVEARK 683

Query: 301 VLNDM 305
           +  +M
Sbjct: 684 LFEEM 688



 Score = 45.4 bits (106), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 4/96 (4%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M Q C  + +    +++  M  RG +P+  +Y  LI G+C+   M  A+ +  EM   G 
Sbjct: 599 MKQYCIKNNMRATTEIYKAMHDRGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKGY 658

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKE 96
              + TY  L+RG  + +    A     KL+E M++
Sbjct: 659 SVTAATYDALIRGFYKRKKFVEAR----KLFEEMRK 690


>gi|357120470|ref|XP_003561950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Brachypodium distachyon]
          Length = 925

 Score =  195 bits (495), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 130/492 (26%), Positives = 235/492 (47%), Gaps = 10/492 (2%)

Query: 3   QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           QL  L+        +  +   G  PN++ Y ++I+  C+ G +  A  + +++   G+ P
Sbjct: 202 QLNKLNMTSTVMDRYHQILREGLQPNLLIYNSVINALCKDGNVRDAESIINKVFKSGMKP 261

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           ++ TY+ ++ G  R RD++ A    F+++ RM +EE    N A ++ L++ LC  G VNE
Sbjct: 262 DTFTYTSMILGYCRNRDLDSA----FEIFNRM-DEEGCEPNAATYSTLINGLCNSGRVNE 316

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
                 +M +   +         I +LC  GR   A ++   M+K+G  P++ +Y S++ 
Sbjct: 317 ALDFISEMTRHGVLPTVHTFTAPIVALCDMGRIEDAWKIFIDMKKKGCKPNVYTYTSLIS 376

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           G         A  L     + G +P+  TY  L+  L    +++ A  V   M     + 
Sbjct: 377 G---QRVSRMAIGLFHRMSRDGVVPNTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLP 433

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
            T   N  +R  C I +  + +++L  ML+ +  P ++T N +I G+C  G  + A++VL
Sbjct: 434 NTSSYNELIRGYCTIGDTEKAMSMLTNMLKGRPTPTLVTYNIIIKGYCDSGDTDVAIRVL 493

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
             M A   C PD  ++T +I G   + +++ A  +  ++M  RG  P  VTY A++ G  
Sbjct: 494 ELMKANG-CQPDEWSYTELISGFCKISKMELASGMFNEMM-DRGLCPNEVTYTALISGYC 551

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
           +  +++ A  +   M   G   +  TY ++I GL + N    A+     ++      D  
Sbjct: 552 KDEKLDCAARMLERMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMLEEKISPDVV 611

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
            Y+ +I GLC +G I  A+    ++V  G  PN+  Y+ +I    +     EA ++  E+
Sbjct: 612 TYSTVINGLCNNGAIPLALEMFNKMVKHGCLPNLHTYSSLIQALGQEGRVEEAEEMFSEL 671

Query: 483 RKNGLNPDAVTW 494
           +K GL PD VT+
Sbjct: 672 KKQGLIPDEVTY 683



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 141/553 (25%), Positives = 233/553 (42%), Gaps = 71/553 (12%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC + R+ +A K+F DMK +G  PNV +YT+LI G  R   M +   +F  M   GV+PN
Sbjct: 343 LCDMGRIEDAWKIFIDMKKKGCKPNVYTYTSLISGQ-RVSRMAIG--LFHRMSRDGVVPN 399

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           ++TY+ L+  ++   +++ A ++       M  +     N +++  L+   C  G   + 
Sbjct: 400 TVTYNALMNVLMENMEIDSALIVF-----NMMGKHGCLPNTSSYNELIRGYCTIGDTEKA 454

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             +  +M +G+          +I   C SG    A RV+ +M+  G  P   SY  ++ G
Sbjct: 455 MSMLTNMLKGRPTPTLVTYNIIIKGYCDSGDTDVAIRVLELMKANGCQPDEWSYTELISG 514

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK      A  +  E +  G  P+E TY  L+ G C +  L+ A ++L+ M        
Sbjct: 515 FCKISKMELASGMFNEMMDRGLCPNEVTYTALISGYCKDEKLDCAARMLERMKRSGCRPN 574

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
            +  N+ +  L    N +    +   ML+ +  PDV+T +TVING C  G I  AL++ N
Sbjct: 575 VQTYNVLIHGLTKQNNFSGAEELCKVMLEEKISPDVVTYSTVINGLCNNGAIPLALEMFN 634

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            MV    C P+  T++++I  L   GR++EA  +  ++  Q G  P  VTY  ++     
Sbjct: 635 KMVKHG-CLPNLHTYSSLIQALGQEGRVEEAEEMFSELKKQ-GLIPDEVTYVKMIEVCVM 692

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQL-----------DEAKRFWDDI 412
             +V+ A +    M+  G      TY ++I GL   N++                F D I
Sbjct: 693 SGKVDRAFDFLGEMINAGCQPTLQTYDVLIKGL--QNEMVYHKLVALPNAASTSTFDDQI 750

Query: 413 VWPSNIH-------------DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN---- 455
           +    I                 +Y A++  L RSG+  EA +    +V     PN    
Sbjct: 751 INKDVISVLSSKLAELDFELSRQLYDALLSRLSRSGRWFEANNLYRSMVSQSQCPNQDTY 810

Query: 456 -------------------------------IVCYNVVIDGACKLSMKREAYQILREMRK 484
                                          +  Y  +I   C+L  ++EA  +  +M  
Sbjct: 811 KHFLISLLRALKVDLAMDVFKHMSDQRCELHLTGYKELICTLCQLHRRKEARFVFEKMLS 870

Query: 485 NGLNPDAVTWRIL 497
             LN D + W IL
Sbjct: 871 RALNADEIVWTIL 883



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 113/490 (23%), Positives = 218/490 (44%), Gaps = 11/490 (2%)

Query: 17  FFDMKS-RGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVL 75
           + DM S RG    + +YTTL+    +          + ++   G+ PN L Y+ ++  + 
Sbjct: 180 YLDMFSQRGPKMGLFTYTTLLIQLNKLNMTSTVMDRYHQILREGLQPNLLIYNSVINALC 239

Query: 76  RTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKS 135
           +  +V  A  ++ K+++       +  +   + +++   CR   ++  F I   M +   
Sbjct: 240 KDGNVRDAESIINKVFK-----SGMKPDTFTYTSMILGYCRNRDLDSAFEIFNRMDEEGC 294

Query: 136 VNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQ 195
                    +I+ LC SGR + A   +  M + G+ P++ ++ + +  LC  G    A++
Sbjct: 295 EPNAATYSTLINGLCNSGRVNEALDFISEMTRHGVLPTVHTFTAPIVALCDMGRIEDAWK 354

Query: 196 LLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALC 255
           +  +  + G  P+ +TY  L+ G   +     A  +   M     V  T   N  +  L 
Sbjct: 355 IFIDMKKKGCKPNVYTYTSLISG---QRVSRMAIGLFHRMSRDGVVPNTVTYNALMNVLM 411

Query: 256 LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA 315
                   L V   M +  C P+  + N +I G+C +G  E+A+ +L +M+ G+   P  
Sbjct: 412 ENMEIDSALIVFNMMGKHGCLPNTSSYNELIRGYCTIGDTEKAMSMLTNMLKGR-PTPTL 470

Query: 316 VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN 375
           VT+  II G  + G    A+ +L ++M   G  P   +Y  ++ G  ++ ++E A  +FN
Sbjct: 471 VTYNIIIKGYCDSGDTDVAIRVL-ELMKANGCQPDEWSYTELISGFCKISKMELASGMFN 529

Query: 376 CMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG 435
            M+  G+  +  TY  +I G C+  +LD A R  + +       +   Y  +I GL +  
Sbjct: 530 EMMDRGLCPNEVTYTALISGYCKDEKLDCAARMLERMKRSGCRPNVQTYNVLIHGLTKQN 589

Query: 436 KIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWR 495
               A      +++  ++P++V Y+ VI+G C       A ++  +M K+G  P+  T+ 
Sbjct: 590 NFSGAEELCKVMLEEKISPDVVTYSTVINGLCNNGAIPLALEMFNKMVKHGCLPNLHTYS 649

Query: 496 ILDKLHGNRG 505
            L +  G  G
Sbjct: 650 SLIQALGQEG 659



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 101/393 (25%), Positives = 180/393 (45%), Gaps = 20/393 (5%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C +S++  A  +F +M  RG  PN V+YT LI GYC+  ++D A ++ + M+  G  PN
Sbjct: 515 FCKISKMELASGMFNEMMDRGLCPNEVTYTALISGYCKDEKLDCAARMLERMKRSGCRPN 574

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             TY+VL+ G+ +  +   A  L      ++  EE +S +   ++ +++ LC  G +   
Sbjct: 575 VQTYNVLIHGLTKQNNFSGAEELC-----KVMLEEKISPDVVTYSTVINGLCNNGAIPLA 629

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             +   M +   +        +I +L + GR   A  +   ++K+GL P  V+Y  ++  
Sbjct: 630 LEMFNKMVKHGCLPNLHTYSSLIQALGQEGRVEEAEEMFSELKKQGLIPDEVTYVKMIEV 689

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
               G   RA+  L E I  G  P+  TY VL++GL  E        V   +++  +   
Sbjct: 690 CVMSGKVDRAFDFLGEMINAGCQPTLQTYDVLIKGLQNE-------MVYHKLVALPNAAS 742

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
           T   +  +    +I   +  L  L F L  Q        + +++   + GR  EA  +  
Sbjct: 743 TSTFDDQIINKDVISVLSSKLAELDFELSRQL------YDALLSRLSRSGRWFEANNLYR 796

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            MV+   C P+  T+   +  LL   ++  A+++   +  QR     +  Y  ++  L +
Sbjct: 797 SMVSQSQC-PNQDTYKHFLISLLRALKVDLAMDVFKHMSDQRC-ELHLTGYKELICTLCQ 854

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 396
           L R +EA+ VF  ML   + AD   + I+I+GL
Sbjct: 855 LHRRKEARFVFEKMLSRALNADEIVWTILINGL 887



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 91/375 (24%), Positives = 161/375 (42%), Gaps = 51/375 (13%)

Query: 144 HMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCM----RAYQLLEE 199
           HMI S         A   + +  +RG    L +Y +++  L K         R +Q+L E
Sbjct: 163 HMIKSCSNKAEMTQALNYLDMFSQRGPKMGLFTYTTLLIQLNKLNMTSTVMDRYHQILRE 222

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
           G+Q    P+   Y  ++  LC + ++  A  ++  +                        
Sbjct: 223 GLQ----PNLLIYNSVINALCKDGNVRDAESIINKVF----------------------- 255

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
                       ++  +PD  T  ++I G+C+   ++ A ++ N M   + C P+A T++
Sbjct: 256 ------------KSGMKPDTFTYTSMILGYCRNRDLDSAFEIFNRM-DEEGCEPNAATYS 302

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
           T+I GL N GR+ EAL+ + + M + G  P + T+ A +  L  + R+E+A ++F  M  
Sbjct: 303 TLINGLCNSGRVNEALDFISE-MTRHGVLPTVHTFTAPIVALCDMGRIEDAWKIFIDMKK 361

Query: 380 IGVVADSTTYAIVIDGLCESNQ-LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIH 438
            G   +  TY  +I G   S   +    R   D V P+ +     Y A++  L  + +I 
Sbjct: 362 KGCKPNVYTYTSLISGQRVSRMAIGLFHRMSRDGVVPNTV----TYNALMNVLMENMEID 417

Query: 439 EAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILD 498
            A+     +   G  PN   YN +I G C +    +A  +L  M K    P  VT+ I+ 
Sbjct: 418 SALIVFNMMGKHGCLPNTSSYNELIRGYCTIGDTEKAMSMLTNMLKGRPTPTLVTYNIII 477

Query: 499 KLHGNRGN-DFGLRI 512
           K + + G+ D  +R+
Sbjct: 478 KGYCDSGDTDVAIRV 492


>gi|242048026|ref|XP_002461759.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
 gi|241925136|gb|EER98280.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
          Length = 896

 Score =  195 bits (495), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 122/478 (25%), Positives = 224/478 (46%), Gaps = 8/478 (1%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           +V EA  LF  MK     PN  +Y  +I   C  G+++ AY + DEM H G+ PN LT +
Sbjct: 372 KVDEALTLFEAMKKDAE-PNSSTYNIIIDMLCMAGKVEEAYMIRDEMEHAGLFPNLLTVN 430

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
           ++V  + + +  E A    ++++E    +   + N+  + +L+D L ++G V++ +R+ E
Sbjct: 431 IMVDRLCKAKKFEPA----YEMFE-TASQRGCNPNSVTYCSLIDGLGKKGNVDDAYRLFE 485

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
           +M              +I +    GR     ++   M +RG  P L   N+ +  + K G
Sbjct: 486 NMLDTGHNANPVVYTSLIRNFFMHGRKEDGHKIFKEMNRRGCQPDLTLLNTYMDCVFKAG 545

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
              +   + E+   +G+LP   +Y +L+ GL       +   +   M  +      R  N
Sbjct: 546 DVEKGRAIFEDIKGYGFLPDVRSYSILIHGLTKAGQARETSSIFHAMKQQGFALDARAYN 605

Query: 249 IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 308
             +   C      +   VL  M   +  P V T  ++I+G  K+ R++EA  +  +    
Sbjct: 606 AVVDGFCKSGKLDKAYEVLEEMKVKRVPPTVATYGSIIDGLAKIDRLDEAYMLFEE-AKS 664

Query: 309 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE 368
           K    + + ++++I G   VGRI EA  +L ++M ++G +P + T+N+++  L +   + 
Sbjct: 665 KGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMM-KKGLTPNVYTWNSLMDALVKAEEIN 723

Query: 369 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI 428
           EA   F  M  +    ++ TY+I+I+GLC   + ++A  FW ++     + +   Y  MI
Sbjct: 724 EALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMI 783

Query: 429 KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG 486
            GL + G I +A         +G TP+   +N +I+G    +   EAY +  E R  G
Sbjct: 784 AGLAKVGNITDACSLFERFKANGGTPDAASFNALIEGMSHANRAIEAYHVFEETRLKG 841



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 135/529 (25%), Positives = 243/529 (45%), Gaps = 78/529 (14%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R+ EA +LF  M++   VP   +Y T+I GY   G+ + AYK+ D+++  G +P+
Sbjct: 297 LCKAGRLSEAEELFGQMETERAVPCAYAYNTMIMGYGSAGQFENAYKLLDQLKERGCIPS 356

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            ++++ ++  + + R V+ A      L+E MK+  D   N++ +  ++D LC  G V E 
Sbjct: 357 VVSFNSILTCLGKKRKVDEA----LTLFEAMKK--DAEPNSSTYNIIIDMLCMAGKVEEA 410

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           + I ++M              M+D LC++ +   A  +     +RG  P+ V+Y S++ G
Sbjct: 411 YMIRDEMEHAGLFPNLLTVNIMVDRLCKAKKFEPAYEMFETASQRGCNPNSVTYCSLIDG 470

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           L K G    AY+L E  +  G+  +   Y  L+         E   K+       K+++R
Sbjct: 471 LGKKGNVDDAYRLFENMLDTGHNANPVVYTSLIRNFFMHGRKEDGHKIF------KEMNR 524

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                                          CQPD+  LNT ++   K G +E+   +  
Sbjct: 525 R-----------------------------GCQPDLTLLNTYMDCVFKAGDVEKGRAIFE 555

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           D+    F  PD  +++ +I GL   G+ +E  ++ +  M Q+G++     YNAV+ G  +
Sbjct: 556 DIKGYGFL-PDVRSYSILIHGLTKAGQARETSSI-FHAMKQQGFALDARAYNAVVDGFCK 613

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
             ++++A EV   M    V     TY  +IDGL + ++LDEA   +++        +  V
Sbjct: 614 SGKLDKAYEVLEEMKVKRVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIV 673

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNI--------------------VC----- 458
           Y+++I G  + G+I EA   L E++  G+TPN+                    +C     
Sbjct: 674 YSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKAEEINEALICFQSMK 733

Query: 459 ----------YNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
                     Y+++I+G C++    +A+   +EM+K GL P+ VT+  +
Sbjct: 734 EMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTM 782



 Score =  171 bits (434), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 124/488 (25%), Positives = 222/488 (45%), Gaps = 43/488 (8%)

Query: 10  VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSV 69
           V  A K F ++KS+G  P+ VSYT++I   C+ G +  A ++F +M     +P +  Y+ 
Sbjct: 268 VDMAWKFFHELKSQGLKPDDVSYTSMIWVLCKAGRLSEAEELFGQMETERAVPCAYAYNT 327

Query: 70  LVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAED 129
           ++ G       E A    +KL +++KE   +  +  +F +++  L ++  V+E   + E 
Sbjct: 328 MIMGYGSAGQFENA----YKLLDQLKERGCIP-SVVSFNSILTCLGKKRKVDEALTLFEA 382

Query: 130 MPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG 189
           M +    N       +ID LC +G+   A  +   M   GL P+L++ N +V  LCK   
Sbjct: 383 MKKDAEPNSS-TYNIIIDMLCMAGKVEEAYMIRDEMEHAGLFPNLLTVNIMVDRLCKAKK 441

Query: 190 CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNI 249
              AY++ E   Q G  P+  TY  L++GL  + +++ A ++ + ML             
Sbjct: 442 FEPAYEMFETASQRGCNPNSVTYCSLIDGLGKKGNVDDAYRLFENML------------- 488

Query: 250 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK 309
                                  T    + +   ++I  F   GR E+  K+  +M   +
Sbjct: 489 ----------------------DTGHNANPVVYTSLIRNFFMHGRKEDGHKIFKEM-NRR 525

Query: 310 FCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEE 369
            C PD     T +  +   G +++    +++ +   G+ P + +Y+ ++ GL +  +  E
Sbjct: 526 GCQPDLTLLNTYMDCVFKAGDVEKG-RAIFEDIKGYGFLPDVRSYSILIHGLTKAGQARE 584

Query: 370 AKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIK 429
              +F+ M   G   D+  Y  V+DG C+S +LD+A    +++           Y ++I 
Sbjct: 585 TSSIFHAMKQQGFALDARAYNAVVDGFCKSGKLDKAYEVLEEMKVKRVPPTVATYGSIID 644

Query: 430 GLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNP 489
           GL +  ++ EA     E    G+  N++ Y+ +IDG  K+    EAY IL EM K GL P
Sbjct: 645 GLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKGLTP 704

Query: 490 DAVTWRIL 497
           +  TW  L
Sbjct: 705 NVYTWNSL 712



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 120/493 (24%), Positives = 233/493 (47%), Gaps = 8/493 (1%)

Query: 13  AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVR 72
           A +L   M+  G+   V  +TTL+    R G ++ A  + DE++   + P+ + Y+V + 
Sbjct: 201 ALELLRQMQEVGYEVGVPLFTTLVRALAREGRVEGALALVDEVKGSCLEPDIVLYNVCID 260

Query: 73  GVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQ 132
              +  +V+ A    +K +  +K +  L  ++ ++ +++  LC+ G ++E   +   M  
Sbjct: 261 CFGKAGNVDMA----WKFFHELKSQ-GLKPDDVSYTSMIWVLCKAGRLSEAEELFGQMET 315

Query: 133 GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMR 192
            ++V   +A   MI     +G+   A +++  +++RG  PS+VS+NSI+  L K      
Sbjct: 316 ERAVPCAYAYNTMIMGYGSAGQFENAYKLLDQLKERGCIPSVVSFNSILTCLGKKRKVDE 375

Query: 193 AYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLR 252
           A  L E  ++    P+  TY ++++ LC    +E+A  +   M            NI + 
Sbjct: 376 ALTLFE-AMKKDAEPNSSTYNIIIDMLCMAGKVEEAYMIRDEMEHAGLFPNLLTVNIMVD 434

Query: 253 ALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCA 312
            LC  K       +     Q  C P+ +T  ++I+G  K G +++A ++  +M+     A
Sbjct: 435 RLCKAKKFEPAYEMFETASQRGCNPNSVTYCSLIDGLGKKGNVDDAYRLFENMLDTGHNA 494

Query: 313 PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKE 372
            + V +T++I      GR ++  + +++ M +RG  P +   N  +  +F+   VE+ + 
Sbjct: 495 -NPVVYTSLIRNFFMHGRKEDG-HKIFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRA 552

Query: 373 VFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLC 432
           +F  + G G + D  +Y+I+I GL ++ Q  E    +  +       D   Y A++ G C
Sbjct: 553 IFEDIKGYGFLPDVRSYSILIHGLTKAGQARETSSIFHAMKQQGFALDARAYNAVVDGFC 612

Query: 433 RSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAV 492
           +SGK+ +A   L E+    V P +  Y  +IDG  K+    EAY +  E +  G+  + +
Sbjct: 613 KSGKLDKAYEVLEEMKVKRVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVI 672

Query: 493 TWRILDKLHGNRG 505
            +  L    G  G
Sbjct: 673 VYSSLIDGFGKVG 685



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 106/414 (25%), Positives = 200/414 (48%), Gaps = 13/414 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D+LC   +   A+++F     RG  PN V+Y +LI G  + G +D AY++F+ M   G 
Sbjct: 433 VDRLCKAKKFEPAYEMFETASQRGCNPNSVTYCSLIDGLGKKGNVDDAYRLFENMLDTGH 492

Query: 61  LPNSLTYSVLVRGVL---RTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCRE 117
             N + Y+ L+R      R  D  +    +FK   R   + DL++ N      +D + + 
Sbjct: 493 NANPVVYTSLIRNFFMHGRKEDGHK----IFKEMNRRGCQPDLTLLN----TYMDCVFKA 544

Query: 118 GYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
           G V +   I ED+     + +  +   +I  L ++G+    S + + M+++G      +Y
Sbjct: 545 GDVEKGRAIFEDIKGYGFLPDVRSYSILIHGLTKAGQARETSSIFHAMKQQGFALDARAY 604

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
           N++V G CK G   +AY++LEE       P+  TY  +++GL     L++A  + +   S
Sbjct: 605 NAVVDGFCKSGKLDKAYEVLEEMKVKRVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKS 664

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
           K       + +  +     +    E   +L  M++    P+V T N++++   K   I E
Sbjct: 665 KGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKAEEINE 724

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           AL     M   K C+P+  T++ +I GL  V +  +A  + +Q M ++G  P +VTY  +
Sbjct: 725 ALICFQSMKEMK-CSPNTYTYSILINGLCRVQKYNKAF-VFWQEMQKQGLVPNVVTYTTM 782

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDD 411
           + GL ++  + +A  +F      G   D+ ++  +I+G+  +N+  EA   +++
Sbjct: 783 IAGLAKVGNITDACSLFERFKANGGTPDAASFNALIEGMSHANRAIEAYHVFEE 836



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 95/368 (25%), Positives = 169/368 (45%), Gaps = 8/368 (2%)

Query: 141 ACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEG 200
           AC  ++ +L R+ R   A RV+  MR+    P+  +Y  ++  + +     RA +LL + 
Sbjct: 149 ACADLVSALVRTRRLDDAERVIAAMRRLKFRPAFSAYTVLIGAMAEARQPERALELLRQM 208

Query: 201 IQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNP 260
            + GY      +  LV  L  E  +E A  ++  +          + N+ +       N 
Sbjct: 209 QEVGYEVGVPLFTTLVRALAREGRVEGALALVDEVKGSCLEPDIVLYNVCIDCFGKAGN- 267

Query: 261 TELLNVLVFMLQTQ-CQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
            ++       L++Q  +PD ++  ++I   CK GR+ EA ++   M   +   P A  + 
Sbjct: 268 VDMAWKFFHELKSQGLKPDDVSYTSMIWVLCKAGRLSEAEELFGQMETER-AVPCAYAYN 326

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
           T+I G  + G+ + A  LL Q + +RG  P +V++N++L  L + R+V+EA  +F  M  
Sbjct: 327 TMIMGYGSAGQFENAYKLLDQ-LKERGCIPSVVSFNSILTCLGKKRKVDEALTLFEAMKK 385

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
                +S+TY I+ID LC + +++EA    D++       +      M+  LC++ K   
Sbjct: 386 -DAEPNSSTYNIIIDMLCMAGKVEEAYMIRDEMEHAGLFPNLLTVNIMVDRLCKAKKFEP 444

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
           A          G  PN V Y  +IDG  K     +AY++   M   G N + V +  L +
Sbjct: 445 AYEMFETASQRGCNPNSVTYCSLIDGLGKKGNVDDAYRLFENMLDTGHNANPVVYTSLIR 504

Query: 500 ---LHGNR 504
              +HG +
Sbjct: 505 NFFMHGRK 512


>gi|302763357|ref|XP_002965100.1| hypothetical protein SELMODRAFT_83796 [Selaginella moellendorffii]
 gi|300167333|gb|EFJ33938.1| hypothetical protein SELMODRAFT_83796 [Selaginella moellendorffii]
          Length = 603

 Score =  195 bits (495), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 144/502 (28%), Positives = 242/502 (48%), Gaps = 18/502 (3%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           L  L R G         +S    PNV S+  L+ G+    + +V   +  EM+  G+  N
Sbjct: 103 LLALVRGGHLSDALGFFQSSISEPNVSSFNILLRGFAARDDFEVVNALLREMKSRGITSN 162

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             T+ V++  +   RD+++A V  F      K E  L      +  LVD LC+   V   
Sbjct: 163 GATHGVILSALCARRDLDKA-VSYFNSVSPNKCEPTLFT----YTVLVDGLCKAHKVERA 217

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             + E+M +     +  A   +ID L ++GR   A ++V +M  RG  P+ V+Y SIV G
Sbjct: 218 CDVFEEMIRKGYKPDIIAYSSLIDGLSKAGRVDEARKLVDLMVARGPPPTAVAYTSIVAG 277

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LCK G    A + ++E  +    P   TY  +V G  G   +EKA  V++ M  +     
Sbjct: 278 LCKCGRIQEAVKTIQEMRRRRLRPRVDTYSFIVTGYIGMGKVEKAFAVMEEMADRDCAPD 337

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
           T    +++ AL  I    E   V   M++  C+PD+ T   +I+ FCK G +  A  VL 
Sbjct: 338 TISYTMFIEALYSIGRREEAEKVFETMVEKGCKPDMHTYGIIIDNFCKEGSMAAATHVLR 397

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            M       P+   +T I+ G +   R++EAL  LYQ + + G  P  VTYN V+  L +
Sbjct: 398 LMDKAA-VKPNRYIYTMIMDGFVKSSRLEEALE-LYQRILKDGILPSTVTYNTVINALCK 455

Query: 364 LRRVEEAKEVFNCM------LGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 417
           L++++EA E+   M      L   +V    TY+++I GL +    + A     +++    
Sbjct: 456 LKKMDEALELLREMQRRKEELEPSIV----TYSMIIHGLGKVGMEERAFDLLAEMIDNGV 511

Query: 418 IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQ 477
           I D + Y ++I+ L  +GK+  A+  L E++ +G+ P+   Y  ++   C+  +   A+ 
Sbjct: 512 IPDCFTYTSLIQTLAGAGKVSRAMELLEEMLKAGIFPDDHTYGTLVQILCRSDVD-AAWD 570

Query: 478 ILREMRKNGLNPDAVTWRILDK 499
           +L+EM +NG  P+  T++ ++K
Sbjct: 571 LLQEMMRNGHTPNEFTFKAVEK 592



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 112/433 (25%), Positives = 195/433 (45%), Gaps = 10/433 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +  LC    + +A   F  +      P + +YT L+ G C+  +++ A  VF+EM   G 
Sbjct: 170 LSALCARRDLDKAVSYFNSVSPNKCEPTLFTYTVLVDGLCKAHKVERACDVFEEMIRKGY 229

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ + YS L+ G+ +   V+ A  L+  +  R            A+ ++V  LC+ G +
Sbjct: 230 KPDIIAYSSLIDGLSKAGRVDEARKLVDLMVARGPPP-----TAVAYTSIVAGLCKCGRI 284

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E  +  ++M + +          ++      G+   A  V+  M  R   P  +SY   
Sbjct: 285 QEAVKTIQEMRRRRLRPRVDTYSFIVTGYIGMGKVEKAFAVMEEMADRDCAPDTISYTMF 344

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +  L   G    A ++ E  ++ G  P  HTY ++++  C E  +  A  VL+ M  K  
Sbjct: 345 IEALYSIGRREEAEKVFETMVEKGCKPDMHTYGIIIDNFCKEGSMAAATHVLRLM-DKAA 403

Query: 241 VDRTR-ICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
           V   R I  + +          E L +   +L+    P  +T NTVIN  CK+ +++EAL
Sbjct: 404 VKPNRYIYTMIMDGFVKSSRLEEALELYQRILKDGILPSTVTYNTVINALCKLKKMDEAL 463

Query: 300 KVLNDMVAGK-FCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
           ++L +M   K    P  VT++ II GL  VG  + A +LL + M   G  P   TY +++
Sbjct: 464 ELLREMQRRKEELEPSIVTYSMIIHGLGKVGMEERAFDLLAE-MIDNGVIPDCFTYTSLI 522

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
           + L    +V  A E+   ML  G+  D  TY  ++  LC S+ +D A     +++   + 
Sbjct: 523 QTLAGAGKVSRAMELLEEMLKAGIFPDDHTYGTLVQILCRSD-VDAAWDLLQEMMRNGHT 581

Query: 419 HDNYVYAAMIKGL 431
            + + + A+ KG 
Sbjct: 582 PNEFTFKAVEKGF 594



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 101/368 (27%), Positives = 181/368 (49%), Gaps = 13/368 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D L    RV EA KL   M +RG  P  V+YT+++ G C+ G +  A K   EMR   +
Sbjct: 240 IDGLSKAGRVDEARKLVDLMVARGPPPTAVAYTSIVAGLCKCGRIQEAVKTIQEMRRRRL 299

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P   TYS +V G +    VE+A  +M ++ +R     D + +  ++   +++L   G  
Sbjct: 300 RPRVDTYSFIVTGYIGMGKVEKAFAVMEEMADR-----DCAPDTISYTMFIEALYSIGRR 354

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E  ++ E M +     +    G +ID+ C+ G    A+ V+ +M K  + P+   Y  I
Sbjct: 355 EEAEKVFETMVEKGCKPDMHTYGIIIDNFCKEGSMAAATHVLRLMDKAAVKPNRYIYTMI 414

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G  K      A +L +  ++ G LPS  TY  ++  LC    +++A ++L+ M  +K+
Sbjct: 415 MDGFVKSSRLEEALELYQRILKDGILPSTVTYNTVINALCKLKKMDEALELLREMQRRKE 474

Query: 241 VDRTRIC--NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
                I   ++ +  L  +       ++L  M+     PD  T  ++I      G++  A
Sbjct: 475 ELEPSIVTYSMIIHGLGKVGMEERAFDLLAEMIDNGVIPDCFTYTSLIQTLAGAGKVSRA 534

Query: 299 LKVLNDMV-AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           +++L +M+ AG F  PD  T+ T++  +L    +  A +LL ++M + G++P   T+ AV
Sbjct: 535 MELLEEMLKAGIF--PDDHTYGTLV-QILCRSDVDAAWDLLQEMM-RNGHTPNEFTFKAV 590

Query: 358 LRGLFRLR 365
            +G FRL+
Sbjct: 591 EKG-FRLQ 597


>gi|296087909|emb|CBI35192.3| unnamed protein product [Vitis vinifera]
          Length = 1001

 Score =  195 bits (495), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 125/505 (24%), Positives = 238/505 (47%), Gaps = 7/505 (1%)

Query: 7   LSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLT 66
            + + EA   F  M  +   P+ V +  L+    +T        +  +M   G+ P+  T
Sbjct: 23  FNTLDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYT 82

Query: 67  YSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRI 126
            ++++  +     V+ A   + K+  ++  + D +     F  L+  LC EG + E   +
Sbjct: 83  LAIVINSLCHLNRVDFAFSALAKIL-KLGHQPDAT----TFTTLIRGLCVEGKIGEALHL 137

Query: 127 AEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK 186
            + M            G +I+ LC+  +   A  +   M  +G++P++V+YNS++HGLCK
Sbjct: 138 FDKMIGEGFQPNVVTYGTLINGLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCK 197

Query: 187 HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRI 246
                    L+ E +    +P   T   +V+ LC E  + +A  V+  M+ +        
Sbjct: 198 LCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVT 257

Query: 247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV 306
            N  +   CL       + V   M+   C  +VI+ NT+ING+CK+  +++A+ +  +M 
Sbjct: 258 YNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMS 317

Query: 307 AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 366
             +   P+ VT+ T+I GL +VGR+Q+A++L ++ M  RG  P +VTY  +   L + R 
Sbjct: 318 RQEL-TPNTVTYNTLIHGLCHVGRLQDAISLFHE-MVARGQIPDLVTYRTLSDYLCKNRH 375

Query: 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAA 426
           +++A  +   + G     D   Y  ++DG+C + +L++A+  + ++       + + Y  
Sbjct: 376 LDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNI 435

Query: 427 MIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG 486
           MI GLC+ G + EA     E+  +G +PN   YN++  G  + +      ++L EM   G
Sbjct: 436 MIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRTIELLEEMLARG 495

Query: 487 LNPDAVTWRILDKLHGNRGNDFGLR 511
            + D  T  +L  +  + G D  ++
Sbjct: 496 FSVDVSTTTLLVGMLSDDGLDQSVK 520



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 157/671 (23%), Positives = 266/671 (39%), Gaps = 184/671 (27%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    V EAH +   M  RG  PNVV+Y  L+ G+C   E+DVA KVFD M H   
Sbjct: 227 VDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDC 286

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           + N ++Y+ L+ G  + + V++A      L+E M  +E L+ N   +  L+  LC  G +
Sbjct: 287 VANVISYNTLINGYCKIQSVDKA----MYLFEEMSRQE-LTPNTVTYNTLIHGLCHVGRL 341

Query: 121 NEVFRIAEDMPQGKSVNE--------EFACGH---------------------------M 145
            +   +  +M     + +        ++ C +                           +
Sbjct: 342 QDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTI 401

Query: 146 IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG---------------GC 190
           +D +CR+G    A  +   +  +GL P++ +YN ++HGLCK G               GC
Sbjct: 402 LDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGC 461

Query: 191 --------------------MRAYQLLEEGIQFGYLPSEHTYKVLV-------------E 217
                               +R  +LLEE +  G+     T  +LV             +
Sbjct: 462 SPNDCTYNLITRGFLRNNEALRTIELLEEMLARGFSVDVSTTTLLVGMLSDDGLDQSVKQ 521

Query: 218 GLCGESD-------------------------------------LEKARKVLQFMLSKKD 240
            LC  S                                      L    ++L        
Sbjct: 522 ILCKPSSSSRPSGTQMRSLPPLFLSSSHNSLHSRSPHFNTLDDALSSFNRMLHMHPPPST 581

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           VD T++    L ++  +K+ + +L++   M      PDV TLN +IN FC + R+  A  
Sbjct: 582 VDFTKL----LTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILINSFCHLRRLGYAFS 637

Query: 301 VLNDMVAGKF---------------------CAPDAVTFTTIIFGLLNVGRIQEALNLL- 338
           VL  ++   F                      +PD  T+ ++I  L N+   +    LL 
Sbjct: 638 VLAKLLKLGFQPDVVTYGTLMNGLCKMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLN 697

Query: 339 ----YQVMP-----------------------------QRGYSPGIVTYNAVLRGLFRLR 365
                ++MP                             +RG  P +VTY A++ G     
Sbjct: 698 EMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRS 757

Query: 366 RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYA 425
            ++EA +VF+ M+  G V +  +Y I+I+G C+  ++D+A    + +     I D   Y 
Sbjct: 758 EMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYN 817

Query: 426 AMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN 485
            +I GLC  G++  A+   +E+V SG  P++V Y +++D  CK     EA  +L+ +  +
Sbjct: 818 TLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGS 877

Query: 486 GLNPDAVTWRI 496
            L+ D + + I
Sbjct: 878 NLDADILVYNI 888



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 120/480 (25%), Positives = 227/480 (47%), Gaps = 44/480 (9%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC L+RV  A      +   GH P+  ++TTLI G C  G++  A  +FD+M   G 
Sbjct: 87  INSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGF 146

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +TY  L+ G+ + R V  A    F ++  M   + +S N   + +L+  LC+    
Sbjct: 147 QPNVVTYGTLINGLCKDRQVTEA----FNIFSEMI-TKGISPNIVTYNSLIHGLCKLCEW 201

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
             V  +  +M   K + + F    ++D+LC+ G    A  VV +M  RG+ P++V+YN+ 
Sbjct: 202 KHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNA- 260

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
                                             L++G C  ++++ A KV   M+ K  
Sbjct: 261 ----------------------------------LMDGHCLRNEVDVAVKVFDTMVHKDC 286

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           V      N  +   C I++  + + +   M + +  P+ +T NT+I+G C +GR+++A+ 
Sbjct: 287 VANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAIS 346

Query: 301 VLNDMVA-GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           + ++MVA G+   PD VT+ T+   L     + +A+ LL + +    + P I  Y  +L 
Sbjct: 347 LFHEMVARGQI--PDLVTYRTLSDYLCKNRHLDKAMALL-KAIEGSNWDPDIQIYTTILD 403

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
           G+ R   +E+A+++F+ +   G+  +  TY I+I GLC+   L EA + + ++       
Sbjct: 404 GMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSP 463

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           ++  Y  + +G  R+ +    +  L E++  G + ++    +++       + +   QIL
Sbjct: 464 NDCTYNLITRGFLRNNEALRTIELLEEMLARGFSVDVSTTTLLVGMLSDDGLDQSVKQIL 523



 Score =  161 bits (407), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 106/389 (27%), Positives = 193/389 (49%), Gaps = 15/389 (3%)

Query: 107 FANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMR 166
           F  L+ S+ +  + + V  ++  M       + +    +I+S C   R   A  V+  + 
Sbjct: 584 FTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILINSFCHLRRLGYAFSVLAKLL 643

Query: 167 KRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLE 226
           K G  P +V+Y ++++GLCK         ++ +GI     P   TY  L+  LC   + +
Sbjct: 644 KLGFQPDVVTYGTLMNGLCK---------MITKGIS----PDIFTYNSLIHALCNLCEWK 690

Query: 227 KARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVI 286
               +L  M++ K +    + +  + ALC         +V+  M++   +PDV+T   ++
Sbjct: 691 HVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALM 750

Query: 287 NGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
           +G C    ++EA+KV + MV  K C P+  ++  +I G   + R+ +A+ LL Q M  +G
Sbjct: 751 DGHCLRSEMDEAVKVFDTMVH-KGCVPNVRSYNILINGYCQIQRMDKAMGLLEQ-MSLQG 808

Query: 347 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
                VTYN ++ GL  + R++ A  +F+ M+  G + D  TY I++D LC+++ L EA 
Sbjct: 809 LIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAM 868

Query: 407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466
                I   +   D  VY   I G+CR+G++  A      L   G+ P++  YN++I G 
Sbjct: 869 VLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVRTYNIMIHGL 928

Query: 467 CKLSMKREAYQILREMRKNGLNPDAVTWR 495
           CK  +  EA ++ R+M +N +  ++ + R
Sbjct: 929 CKRGLLDEANKLFRKMDENDIWSNSTSSR 957



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 99/396 (25%), Positives = 180/396 (45%), Gaps = 20/396 (5%)

Query: 45  MDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNN 104
           +D A   F+ M H    P+++ ++ L+  + + +       L  ++ +      D+   N
Sbjct: 562 LDDALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQM-DSFGIPPDVYTLN 620

Query: 105 AAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYV 164
                L++S C    +   F +   + +     +    G +++ LC+             
Sbjct: 621 I----LINSFCHLRRLGYAFSVLAKLLKLGFQPDVVTYGTLMNGLCK------------- 663

Query: 165 MRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESD 224
           M  +G++P + +YNS++H LC          LL E +    +P+   +  +V+ LC E  
Sbjct: 664 MITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGM 723

Query: 225 LEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNT 284
           +  A  V+  M+ +            +   CL     E + V   M+   C P+V + N 
Sbjct: 724 IAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNI 783

Query: 285 VINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ 344
           +ING+C++ R+++A+ +L  M      A D VT+ T+I GL +VGR+Q A+ L ++ M  
Sbjct: 784 LINGYCQIQRMDKAMGLLEQMSLQGLIA-DTVTYNTLIHGLCHVGRLQHAIALFHE-MVA 841

Query: 345 RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 404
            G  P +VTY  +L  L +   + EA  +   + G  + AD   Y I IDG+C + +L+ 
Sbjct: 842 SGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEA 901

Query: 405 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEA 440
           A+  + ++       D   Y  MI GLC+ G + EA
Sbjct: 902 ARDLFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEA 937



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 96/391 (24%), Positives = 176/391 (45%), Gaps = 57/391 (14%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M S G  P+V +   LI+ +C    +  A+ V  ++   G  P+ +TY  L+ G+ +   
Sbjct: 607 MDSFGIPPDVYTLNILINSFCHLRRLGYAFSVLAKLLKLGFQPDVVTYGTLMNGLCKMI- 665

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
                             + +S +   + +L+ +LC       V  +  +M   K +   
Sbjct: 666 -----------------TKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNV 708

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
                ++D+LC+ G    A  VV +M KRG+ P +V+Y +++ G C       A ++ + 
Sbjct: 709 VVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDT 768

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
            +  G +P+  +Y +L+ G C    ++KA  +L+ M               L+ L     
Sbjct: 769 MVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQM--------------SLQGLI---- 810

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA-GKFCAPDAVTF 318
                             D +T NT+I+G C +GR++ A+ + ++MVA G+   PD VT+
Sbjct: 811 -----------------ADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQI--PDLVTY 851

Query: 319 TTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCML 378
             ++  L     + EA+ LL + +        I+ YN  + G+ R   +E A+++F+ + 
Sbjct: 852 RILLDYLCKNHHLAEAMVLL-KAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFSNLS 910

Query: 379 GIGVVADSTTYAIVIDGLCESNQLDEAKRFW 409
             G+  D  TY I+I GLC+   LDEA + +
Sbjct: 911 SKGLQPDVRTYNIMIHGLCKRGLLDEANKLF 941



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 88/388 (22%), Positives = 171/388 (44%), Gaps = 55/388 (14%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C L R+G A  +   +   G  P+VV+Y TL++G C+             M   G+
Sbjct: 623 INSFCHLRRLGYAFSVLAKLLKLGFQPDVVTYGTLMNGLCK-------------MITKGI 669

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+  TY+ L+  +    + +    L+ ++         +  N   F+ +VD+LC+EG +
Sbjct: 670 SPDIFTYNSLIHALCNLCEWKHVTTLLNEMV-----NSKIMPNVVVFSTVVDALCKEGMI 724

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                IA D                               VV +M KRG+ P +V+Y ++
Sbjct: 725 ----AIAHD-------------------------------VVDMMIKRGVEPDVVTYTAL 749

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G C       A ++ +  +  G +P+  +Y +L+ G C    ++KA  +L+ M  +  
Sbjct: 750 MDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGL 809

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           +  T   N  +  LC +      + +   M+ +   PD++T   +++  CK   + EA+ 
Sbjct: 810 IADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAM- 868

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           VL   + G     D + +   I G+   G ++ A + L+  +  +G  P + TYN ++ G
Sbjct: 869 VLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARD-LFSNLSSKGLQPDVRTYNIMIHG 927

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTT 388
           L +   ++EA ++F  M    + ++ST+
Sbjct: 928 LCKRGLLDEANKLFRKMDENDIWSNSTS 955



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 56/109 (51%), Gaps = 5/109 (4%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    + EA  L   ++      +++ Y   I G CR GE++ A  +F  +   G+
Sbjct: 855 LDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFSNLSSKGL 914

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFAN 109
            P+  TY++++ G+ +   ++ AN    KL+ +M +E D+  N+ +  N
Sbjct: 915 QPDVRTYNIMIHGLCKRGLLDEAN----KLFRKM-DENDIWSNSTSSRN 958


>gi|356544498|ref|XP_003540687.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Glycine max]
          Length = 623

 Score =  195 bits (495), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 131/490 (26%), Positives = 234/490 (47%), Gaps = 14/490 (2%)

Query: 21  KSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDV 80
           + R      + +  L+  YC   + + A + F  ++  G +PN  T + ++   L+    
Sbjct: 138 RDRVDAKTTLIFDLLVRAYCELKKPNEALECFYLIKEKGFVPNIETCNQMLSLFLKLNRT 197

Query: 81  ERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEF 140
           + A VL  +++ RM     L      F  +++ LC+EG + +       M          
Sbjct: 198 QMAWVLYAEMF-RMNIRSSL----YTFNIMINVLCKEGKLKKAKEFIGHMETLGVKPNVV 252

Query: 141 ACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEG 200
               +I   C  G+   A  +   M+ +GL P   +YNS + GLCK G    A  L+ + 
Sbjct: 253 TYNTIIHGHCLRGKFQRARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGLICKM 312

Query: 201 IQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNP 260
           ++ G +P+  TY  L++G C + DL+KA      M+SK  +      N+++ AL +    
Sbjct: 313 LEGGLVPNAVTYNALIDGYCNKGDLDKAYAYRDEMISKGIMASLVTYNLFIHALFMEGRM 372

Query: 261 TELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTT 320
            +  N++  M +    PD +T N +ING+C+ G  + A  +L++MV GK   P  VT+T+
Sbjct: 373 GDADNMIKEMREKGMMPDAVTHNILINGYCRCGDAKRAFGLLDEMV-GKGIQPTLVTYTS 431

Query: 321 IIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI 380
           +I+ L    R++EA + L+  + Q G  P I+ +NA++ G      ++ A ++   M  +
Sbjct: 432 LIYVLGKRNRMKEA-DALFSKIQQEGLLPDIIVFNALIDGHCANGNIDRAFQLLKEMDNM 490

Query: 381 GVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEA 440
            V+ D  TY  ++ G C   +++EA++  D++       D+  Y  +I G  + G + +A
Sbjct: 491 KVLPDEITYNTLMQGYCREGKVEEARQLLDEMKRRGIKPDHISYNTLISGYSKRGDMKDA 550

Query: 441 VHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW------ 494
                E++ +G  P I+ YN +I G CK      A ++L+EM   G+ PD  T+      
Sbjct: 551 FRVRDEMMTTGFDPTILTYNALIQGLCKNQEGEHAEELLKEMVSKGITPDDSTYLSIIEA 610

Query: 495 -RILDKLHGN 503
              +D L GN
Sbjct: 611 METVDDLEGN 620



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 108/400 (27%), Positives = 207/400 (51%), Gaps = 7/400 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   ++ +A +    M++ G  PNVV+Y T+IHG+C  G+   A  +F  M+  G+ P+
Sbjct: 226 LCKEGKLKKAKEFIGHMETLGVKPNVVTYNTIIHGHCLRGKFQRARVIFQTMKDKGLEPD 285

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             TY+  + G+ +   +E A+ L+ K+ E       L  N   +  L+D  C +G +++ 
Sbjct: 286 CYTYNSFISGLCKEGRLEEASGLICKMLEG-----GLVPNAVTYNALIDGYCNKGDLDKA 340

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           +   ++M     +         I +L   GR   A  ++  MR++G+ P  V++N +++G
Sbjct: 341 YAYRDEMISKGIMASLVTYNLFIHALFMEGRMGDADNMIKEMREKGMMPDAVTHNILING 400

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            C+ G   RA+ LL+E +  G  P+  TY  L+  L   + +++A  +   +  +  +  
Sbjct: 401 YCRCGDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRNRMKEADALFSKIQQEGLLPD 460

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
             + N  +   C   N      +L  M   +  PD IT NT++ G+C+ G++EEA ++L+
Sbjct: 461 IIVFNALIDGHCANGNIDRAFQLLKEMDNMKVLPDEITYNTLMQGYCREGKVEEARQLLD 520

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           +M   +   PD +++ T+I G    G +++A  +  ++M   G+ P I+TYNA+++GL +
Sbjct: 521 EM-KRRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMM-TTGFDPTILTYNALIQGLCK 578

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLD 403
            +  E A+E+   M+  G+  D +TY  +I+ +   + L+
Sbjct: 579 NQEGEHAEELLKEMVSKGITPDDSTYLSIIEAMETVDDLE 618



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 101/362 (27%), Positives = 171/362 (47%), Gaps = 37/362 (10%)

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
           MI+ LC+ G+   A   +  M   G+ P++V+YN+I+HG C  G   RA  + +     G
Sbjct: 222 MINVLCKEGKLKKAKEFIGHMETLGVKPNVVTYNTIIHGHCLRGKFQRARVIFQTMKDKG 281

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL 264
             P  +TY   + GLC E  LE+A  +              IC                 
Sbjct: 282 LEPDCYTYNSFISGLCKEGRLEEASGL--------------ICK---------------- 311

Query: 265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 324
                ML+    P+ +T N +I+G+C  G +++A    ++M++    A   VT+   I  
Sbjct: 312 -----MLEGGLVPNAVTYNALIDGYCNKGDLDKAYAYRDEMISKGIMA-SLVTYNLFIHA 365

Query: 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 384
           L   GR+ +A N++ + M ++G  P  VT+N ++ G  R    + A  + + M+G G+  
Sbjct: 366 LFMEGRMGDADNMIKE-MREKGMMPDAVTHNILINGYCRCGDAKRAFGLLDEMVGKGIQP 424

Query: 385 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFL 444
              TY  +I  L + N++ EA   +  I     + D  V+ A+I G C +G I  A   L
Sbjct: 425 TLVTYTSLIYVLGKRNRMKEADALFSKIQQEGLLPDIIVFNALIDGHCANGNIDRAFQLL 484

Query: 445 YELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNR 504
            E+ +  V P+ + YN ++ G C+     EA Q+L EM++ G+ PD +++  L   +  R
Sbjct: 485 KEMDNMKVLPDEITYNTLMQGYCREGKVEEARQLLDEMKRRGIKPDHISYNTLISGYSKR 544

Query: 505 GN 506
           G+
Sbjct: 545 GD 546



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 114/463 (24%), Positives = 210/463 (45%), Gaps = 44/463 (9%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNV----------------------------------- 29
           C L +  EA + F+ +K +G VPN+                                   
Sbjct: 157 CELKKPNEALECFYLIKEKGFVPNIETCNQMLSLFLKLNRTQMAWVLYAEMFRMNIRSSL 216

Query: 30  VSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFK 89
            ++  +I+  C+ G++  A +    M   GV PN +TY+ ++ G       +RA V    
Sbjct: 217 YTFNIMINVLCKEGKLKKAKEFIGHMETLGVKPNVVTYNTIIHGHCLRGKFQRARV---- 272

Query: 90  LWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSL 149
           +++ MK ++ L  +   + + +  LC+EG + E   +   M +G  V        +ID  
Sbjct: 273 IFQTMK-DKGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPNAVTYNALIDGY 331

Query: 150 CRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSE 209
           C  G    A      M  +G+  SLV+YN  +H L   G    A  +++E  + G +P  
Sbjct: 332 CNKGDLDKAYAYRDEMISKGIMASLVTYNLFIHALFMEGRMGDADNMIKEMREKGMMPDA 391

Query: 210 HTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVF 269
            T+ +L+ G C   D ++A  +L  M+  K +  T +    L  +   +N  +  + L  
Sbjct: 392 VTHNILINGYCRCGDAKRAFGLLDEMVG-KGIQPTLVTYTSLIYVLGKRNRMKEADALFS 450

Query: 270 MLQTQ-CQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNV 328
            +Q +   PD+I  N +I+G C  G I+ A ++L +M   K   PD +T+ T++ G    
Sbjct: 451 KIQQEGLLPDIIVFNALIDGHCANGNIDRAFQLLKEMDNMKVL-PDEITYNTLMQGYCRE 509

Query: 329 GRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTT 388
           G+++EA  LL + M +RG  P  ++YN ++ G  +   +++A  V + M+  G      T
Sbjct: 510 GKVEEARQLLDE-MKRRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMMTTGFDPTILT 568

Query: 389 YAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 431
           Y  +I GLC++ + + A+    ++V      D+  Y ++I+ +
Sbjct: 569 YNALIQGLCKNQEGEHAEELLKEMVSKGITPDDSTYLSIIEAM 611



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 86/294 (29%), Positives = 146/294 (49%), Gaps = 4/294 (1%)

Query: 212 YKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVL-VFM 270
           + +LV   C      +A +    +  K  V     CN  L +L L  N T++  VL   M
Sbjct: 149 FDLLVRAYCELKKPNEALECFYLIKEKGFVPNIETCNQML-SLFLKLNRTQMAWVLYAEM 207

Query: 271 LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR 330
            +   +  + T N +IN  CK G++++A + +  M       P+ VT+ TII G    G+
Sbjct: 208 FRMNIRSSLYTFNIMINVLCKEGKLKKAKEFIGHMETLG-VKPNVVTYNTIIHGHCLRGK 266

Query: 331 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYA 390
            Q A  +++Q M  +G  P   TYN+ + GL +  R+EEA  +   ML  G+V ++ TY 
Sbjct: 267 FQRA-RVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPNAVTYN 325

Query: 391 IVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 450
            +IDG C    LD+A  + D+++    +     Y   I  L   G++ +A + + E+ + 
Sbjct: 326 ALIDGYCNKGDLDKAYAYRDEMISKGIMASLVTYNLFIHALFMEGRMGDADNMIKEMREK 385

Query: 451 GVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNR 504
           G+ P+ V +N++I+G C+    + A+ +L EM   G+ P  VT+  L  + G R
Sbjct: 386 GMMPDAVTHNILINGYCRCGDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKR 439



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 52/87 (59%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M   C   +V EA +L  +MK RG  P+ +SY TLI GY + G+M  A++V DEM   G 
Sbjct: 503 MQGYCREGKVEEARQLLDEMKRRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMMTTGF 562

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLM 87
            P  LTY+ L++G+ + ++ E A  L+
Sbjct: 563 DPTILTYNALIQGLCKNQEGEHAEELL 589



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 38/184 (20%), Positives = 76/184 (41%), Gaps = 40/184 (21%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C    +  A +L  +M +   +P+ ++Y TL+ GYCR G+++ A ++ DEM+  G+
Sbjct: 468 IDGHCANGNIDRAFQLLKEMDNMKVLPDEITYNTLMQGYCREGKVEEARQLLDEMKRRGI 527

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ ++Y+ L+ G                                          + G +
Sbjct: 528 KPDHISYNTLISGY----------------------------------------SKRGDM 547

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            + FR+ ++M              +I  LC++     A  ++  M  +G+TP   +Y SI
Sbjct: 548 KDAFRVRDEMMTTGFDPTILTYNALIQGLCKNQEGEHAEELLKEMVSKGITPDDSTYLSI 607

Query: 181 VHGL 184
           +  +
Sbjct: 608 IEAM 611


>gi|125602942|gb|EAZ42267.1| hypothetical protein OsJ_26834 [Oryza sativa Japonica Group]
          Length = 1088

 Score =  194 bits (494), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 134/499 (26%), Positives = 237/499 (47%), Gaps = 7/499 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC    V +A  +   +      P+  +YT++I G+CR  ++D A +VF++M   G 
Sbjct: 392 INALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGC 451

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN++TYS L+ G+  +  V  A    F L   M     L   +     ++ +LC  G  
Sbjct: 452 EPNTVTYSTLINGLCDSGRVNEA----FDLIREMILHGILPTAHTCTGPII-ALCDMGCY 506

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            + +R+  DM         +    +I  LC SG    A  + + M + G+ P+ V+YN++
Sbjct: 507 EDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNAL 566

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++ L ++     A+ +L    + G   +  TY  +++G C   D +KA  V+  ML +  
Sbjct: 567 INILVENRRIKYAFVVLNLMGRNGLFTNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGH 626

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                  N  ++  C   N T  L +L  M    C+PD  +   +I GFCK+ ++E A  
Sbjct: 627 SANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFG 686

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           + N+MV    C P+ VT+T +I G     ++  A +LL + M + G  P + TYN ++ G
Sbjct: 687 LFNEMVDDGLC-PNEVTYTALIDGYCKDEKLDTATSLL-EHMKRSGCRPNVQTYNVLIHG 744

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L +      A+E+   M+  G+  +  TY  +IDGLC++     A   ++ ++    + +
Sbjct: 745 LTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPN 804

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              Y+++I+ L + GK+ EA +   EL   G+ P+ + Y  +I+          A+  L 
Sbjct: 805 LLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLG 864

Query: 481 EMRKNGLNPDAVTWRILDK 499
            M K G  P   T+ +L K
Sbjct: 865 RMIKAGCQPTLWTYGVLIK 883



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 128/507 (25%), Positives = 221/507 (43%), Gaps = 31/507 (6%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC +    +A +LF DMK++G  PNV +YT LI G C +G + VA  +F  M   GV PN
Sbjct: 500 LCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPN 559

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           ++TY+ L+  ++  R ++ A V++      +     L  N   +  ++   C  G   + 
Sbjct: 560 TVTYNALINILVENRRIKYAFVVL-----NLMGRNGLFTNIVTYNEMIKGYCILGDPKKA 614

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             +  +M Q            +I   C SG    A R++ +MR  G  P   SY  ++ G
Sbjct: 615 MLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICG 674

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK      A+ L  E +  G  P+E TY  L++G C +  L+ A  +L+ M        
Sbjct: 675 FCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPN 734

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
            +  N+ +  L    N +    +   M++    P+V+T   +I+G CK G    AL++ N
Sbjct: 735 VQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFN 794

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            M+  + C P+ +T++++I  L   G+++EA NL  + + + G  P  +TY  ++     
Sbjct: 795 KMIE-QGCLPNLLTYSSLIRALGQEGKVEEAENLFAE-LERHGLIPDEITYVKMIEAYIM 852

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQL-DEAKRFWDDIV------WPS 416
             +VE A      M+  G      TY ++I GL     L D+      D+V      + +
Sbjct: 853 SGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSFGYQT 912

Query: 417 NIHDN-----------------YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCY 459
              D                   V  A++  L  +G+  EA   L  ++  G+ P+   Y
Sbjct: 913 TDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANELLGSMISQGLCPDQEAY 972

Query: 460 NVVIDGACKLSMKREAYQILREMRKNG 486
           N ++    ++     A  + + M   G
Sbjct: 973 NSLLCSLLRVRNVDLAMGVFKHMSTQG 999



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 127/505 (25%), Positives = 226/505 (44%), Gaps = 45/505 (8%)

Query: 4   LCGLSRVGEAHKL---FFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           L  LSR+G    +   +  M S G  PN++ Y  +I+  C+ G +  A  +  ++    +
Sbjct: 357 LIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEM 416

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P++ TY+ ++ G  R  D++ A     +++ +M +E     N   ++ L++ LC  G V
Sbjct: 417 SPDTFTYTSMILGHCRKHDLDSA----LQVFNQMAKE-GCEPNTVTYSTLINGLCDSGRV 471

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           NE F +  +M     +     C   I +LC  G    A R+   M+ +G  P++ +Y ++
Sbjct: 472 NEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTAL 531

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GLC  G    A  L     + G  P+  TY  L+  L                     
Sbjct: 532 ISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINIL--------------------- 570

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           V+  RI   ++              VL  M +     +++T N +I G+C +G  ++A+ 
Sbjct: 571 VENRRIKYAFV--------------VLNLMGRNGLFTNIVTYNEMIKGYCILGDPKKAML 616

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           V+N+M+     A + VT+ TII G  + G    AL +L  +M   G  P   +Y  ++ G
Sbjct: 617 VMNNMLQRGHSA-NLVTYNTIIKGYCDSGNTTSALRIL-DLMRDGGCKPDEWSYTELICG 674

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
             ++ ++E A  +FN M+  G+  +  TY  +IDG C+  +LD A    + +       +
Sbjct: 675 FCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPN 734

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              Y  +I GL +      A      +++ G+ PN+V Y  +IDG CK      A ++  
Sbjct: 735 VQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFN 794

Query: 481 EMRKNGLNPDAVTWRILDKLHGNRG 505
           +M + G  P+ +T+  L +  G  G
Sbjct: 795 KMIEQGCLPNLLTYSSLIRALGQEG 819



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 116/414 (28%), Positives = 188/414 (45%), Gaps = 42/414 (10%)

Query: 97  EEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNH 156
            E +  N   +  ++++LC++G V +   I + + + +   + F    MI   CR     
Sbjct: 378 SEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLD 437

Query: 157 GASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLV 216
            A +V   M K G  P+ V+Y+++++GLC  G    A+ L+ E I  G LP+ HT     
Sbjct: 438 SALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHT----- 492

Query: 217 EGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQ 276
                                         C   + ALC +    +   + V M    C+
Sbjct: 493 ------------------------------CTGPIIALCDMGCYEDAWRLFVDMKNKGCE 522

Query: 277 PDVITLNTVINGFCKMGRIEEALKVLNDMVA-GKFCAPDAVTFTTIIFGLLNVGRIQEAL 335
           P+V T   +I+G C  G ++ A+ + + M   G F  P+ VT+  +I  L+   RI+ A 
Sbjct: 523 PNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVF--PNTVTYNALINILVENRRIKYAF 580

Query: 336 NLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG 395
            +L  +M + G    IVTYN +++G   L   ++A  V N ML  G  A+  TY  +I G
Sbjct: 581 VVL-NLMGRNGLFTNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKG 639

Query: 396 LCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN 455
            C+S     A R  D +       D + Y  +I G C+  K+  A     E+VD G+ PN
Sbjct: 640 YCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPN 699

Query: 456 IVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG-NRGNDF 508
            V Y  +IDG CK      A  +L  M+++G  P+  T+ +L  +HG  + N+F
Sbjct: 700 EVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVL--IHGLTKQNNF 751



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 124/490 (25%), Positives = 216/490 (44%), Gaps = 35/490 (7%)

Query: 5    CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
            C L    +A  +  +M  RGH  N+V+Y T+I GYC +G    A ++ D MR  G  P+ 
Sbjct: 606  CILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDE 665

Query: 65   LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
             +Y+ L+ G  +   +E A    F L+  M ++  L  N   +  L+D  C++  ++   
Sbjct: 666  WSYTELICGFCKISKMESA----FGLFNEMVDD-GLCPNEVTYTALIDGYCKDEKLDTAT 720

Query: 125  RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
             + E M +            +I  L +     GA  +  VM + G+ P++V+Y +++ GL
Sbjct: 721  SLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGL 780

Query: 185  CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM----LSKKD 240
            CK+G    A ++  + I+ G LP+  TY  L+  L  E  +E+A  +   +    L   +
Sbjct: 781  CKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDE 840

Query: 241  VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI-EEAL 299
            +   ++   Y+    +        N L  M++  CQP + T   +I G      + ++ L
Sbjct: 841  ITYVKMIEAYI----MSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRL 896

Query: 300  KVLNDMVAG-----KFCAPDAVTFTTIIFGLLNVG---RIQEAL-------------NLL 338
              L D+V       +    DAV+  +     L+ G   ++Q AL             N L
Sbjct: 897  AALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANEL 956

Query: 339  YQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE 398
               M  +G  P    YN++L  L R+R V+ A  VF  M   G       Y  +I  LC+
Sbjct: 957  LGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALCQ 1016

Query: 399  SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVC 458
             ++  EA+  +++++  +   D+ V A +I GL R G     + FL+ +      P+   
Sbjct: 1017 LHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLRDGYKDLCMEFLHIMETRRYMPSFHI 1076

Query: 459  YNVVIDGACK 468
            Y ++   A K
Sbjct: 1077 YTILAREASK 1086



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 73/153 (47%)

Query: 341 VMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN 400
           ++ Q G   G+  Y+A+L  L RL       + ++ ML  GV  +   Y  VI+ LC+  
Sbjct: 340 MLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDG 399

Query: 401 QLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYN 460
            + +A+     +       D + Y +MI G CR   +  A+    ++   G  PN V Y+
Sbjct: 400 NVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYS 459

Query: 461 VVIDGACKLSMKREAYQILREMRKNGLNPDAVT 493
            +I+G C      EA+ ++REM  +G+ P A T
Sbjct: 460 TLINGLCDSGRVNEAFDLIREMILHGILPTAHT 492


>gi|449459086|ref|XP_004147277.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
 gi|449501214|ref|XP_004161309.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
          Length = 908

 Score =  194 bits (494), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 132/506 (26%), Positives = 241/506 (47%), Gaps = 44/506 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   ++ EA  LF  M  RG  PN V+YT LI G+ R  ++DVA+  F++M  CG+
Sbjct: 372 INSLCKTGKLEEAELLFSVMAERGLNPNDVTYTILIDGFGRRAKLDVAFYYFNKMIECGI 431

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
                +Y+ ++    +   ++ A +L  ++ ++      L    A + +L+   C++G V
Sbjct: 432 SATVYSYNSMINCQCKFGKMKMAELLFKEMVDK-----GLKPTVATYTSLISGYCKDGLV 486

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            + F++  +M              +I  LC+  +   AS++   M +  + P+ V+YN +
Sbjct: 487 PKAFKLYHEMTGKGIAPNTVTFTALICGLCQINKMAEASKLFDEMVELKILPNEVTYNVL 546

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G C+ G   RA++LL+E I+ G  P  +TY+ L+ GLC    + +A++ +  +  K  
Sbjct: 547 IEGHCREGNTTRAFELLDEMIKKGLSPDTYTYRPLIAGLCSTGRVSEAKEFINDLHHKHQ 606

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                              + D +    ++ GFCK GRI+EAL 
Sbjct: 607 -----------------------------------RLDELCYTALLQGFCKEGRIKEALV 631

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
              +MV G+    D V++  +I G LN  +    L  L + M  +G  P  V Y  ++ G
Sbjct: 632 ARQEMV-GRGLQMDLVSYAVLISGALN--QNDRILFELLREMHGKGMQPDNVIYTILIDG 688

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
             +   +++A E +  M+G G V +S TY  +++GL ++  ++EAK  +  ++    I +
Sbjct: 689 FIKSGNLKKAFEFWYIMIGEGYVPNSVTYTALVNGLFKAGYVNEAKLLFKRMLVGEAIPN 748

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
           +  Y   +  L + G +  A+  L+  +  G   N V YN++I G C++   +EA ++L 
Sbjct: 749 HITYGCFLDHLTKEGNMENALQ-LHNAMLQGSFANTVTYNILIRGYCQIGKFQEAAKLLD 807

Query: 481 EMRKNGLNPDAVTWRILDKLHGNRGN 506
            M   G+ PD +T+      +  RGN
Sbjct: 808 VMIGIGMVPDCITYSTFIYEYCKRGN 833



 Score =  191 bits (486), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 140/503 (27%), Positives = 249/503 (49%), Gaps = 20/503 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ L  + +  +  +LF  + + G  P+   YT ++   C   + + A ++ ++    G 
Sbjct: 197 LNALARIRKFRQVLELFDTLVNAGVKPDCYIYTVVVKCLCELKDFNKAKEIINQAEGNGC 256

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             + +TY+V + G+ +++ V  A  +     +R   E+ L  +   +  LV  LCR    
Sbjct: 257 SLSIVTYNVFINGLCKSKRVWEAVEV-----KRSLGEKGLKADLVTYCTLVLGLCRIQEF 311

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                + ++M +   V  E A   +I+ L + G   GA  ++  + K G+ P+L  YNS+
Sbjct: 312 EVGMEMMDEMIELGYVPSEAAVSGLIEGLIKMGSIEGAFELLNKVGKLGVVPNLFVYNSM 371

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKA----RKVLQFML 236
           ++ LCK G    A  L     + G  P++ TY +L++G    + L+ A     K+++  +
Sbjct: 372 INSLCKTGKLEEAELLFSVMAERGLNPNDVTYTILIDGFGRRAKLDVAFYYFNKMIECGI 431

Query: 237 SKKDVDRTRICNIYLRALCLIKNPTELLNVLVF--MLQTQCQPDVITLNTVINGFCKMGR 294
           S        + N      C  K     +  L+F  M+    +P V T  ++I+G+CK G 
Sbjct: 432 SATVYSYNSMIN------CQCKFGKMKMAELLFKEMVDKGLKPTVATYTSLISGYCKDGL 485

Query: 295 IEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTY 354
           + +A K+ ++M  GK  AP+ VTFT +I GL  + ++ EA + L+  M +    P  VTY
Sbjct: 486 VPKAFKLYHEM-TGKGIAPNTVTFTALICGLCQINKMAEA-SKLFDEMVELKILPNEVTY 543

Query: 355 NAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVW 414
           N ++ G  R      A E+ + M+  G+  D+ TY  +I GLC + ++ EAK F +D+  
Sbjct: 544 NVLIEGHCREGNTTRAFELLDEMIKKGLSPDTYTYRPLIAGLCSTGRVSEAKEFINDLHH 603

Query: 415 PSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKRE 474
                D   Y A+++G C+ G+I EA+    E+V  G+  ++V Y V+I GA   +  R 
Sbjct: 604 KHQRLDELCYTALLQGFCKEGRIKEALVARQEMVGRGLQMDLVSYAVLISGALNQN-DRI 662

Query: 475 AYQILREMRKNGLNPDAVTWRIL 497
            +++LREM   G+ PD V + IL
Sbjct: 663 LFELLREMHGKGMQPDNVIYTIL 685



 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 118/486 (24%), Positives = 226/486 (46%), Gaps = 23/486 (4%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M+  G +P V + + L++   R  +     ++FD + + GV P+   Y+V+V+ +   +D
Sbjct: 181 MRDYGLLPEVRTLSALLNALARIRKFRQVLELFDTLVNAGVKPDCYIYTVVVKCLCELKD 240

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
             +A  ++        E    S++   +   ++ LC+   V E   +   + +     + 
Sbjct: 241 FNKAKEII-----NQAEGNGCSLSIVTYNVFINGLCKSKRVWEAVEVKRSLGEKGLKADL 295

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
                ++  LCR         ++  M + G  PS  + + ++ GL K G    A++LL +
Sbjct: 296 VTYCTLVLGLCRIQEFEVGMEMMDEMIELGYVPSEAAVSGLIEGLIKMGSIEGAFELLNK 355

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM----LSKKDVDRTRICNIYLRALC 255
             + G +P+   Y  ++  LC    LE+A  +   M    L+  DV  T + + + R   
Sbjct: 356 VGKLGVVPNLFVYNSMINSLCKTGKLEEAELLFSVMAERGLNPNDVTYTILIDGFGR--- 412

Query: 256 LIKNPTELLNVLVF----MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC 311
                   L+V  +    M++      V + N++IN  CK G+++ A  +  +MV  K  
Sbjct: 413 -----RAKLDVAFYYFNKMIECGISATVYSYNSMINCQCKFGKMKMAELLFKEMV-DKGL 466

Query: 312 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK 371
            P   T+T++I G    G + +A  L Y  M  +G +P  VT+ A++ GL ++ ++ EA 
Sbjct: 467 KPTVATYTSLISGYCKDGLVPKAFKL-YHEMTGKGIAPNTVTFTALICGLCQINKMAEAS 525

Query: 372 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 431
           ++F+ M+ + ++ +  TY ++I+G C       A    D+++      D Y Y  +I GL
Sbjct: 526 KLFDEMVELKILPNEVTYNVLIEGHCREGNTTRAFELLDEMIKKGLSPDTYTYRPLIAGL 585

Query: 432 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 491
           C +G++ EA  F+ +L       + +CY  ++ G CK    +EA    +EM   GL  D 
Sbjct: 586 CSTGRVSEAKEFINDLHHKHQRLDELCYTALLQGFCKEGRIKEALVARQEMVGRGLQMDL 645

Query: 492 VTWRIL 497
           V++ +L
Sbjct: 646 VSYAVL 651



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 88/337 (26%), Positives = 170/337 (50%), Gaps = 2/337 (0%)

Query: 161 VVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLC 220
           VV +MR  GL P + + +++++ L +     +  +L +  +  G  P  + Y V+V+ LC
Sbjct: 177 VVNLMRDYGLLPEVRTLSALLNALARIRKFRQVLELFDTLVNAGVKPDCYIYTVVVKCLC 236

Query: 221 GESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVI 280
              D  KA++++               N+++  LC  K   E + V   + +   + D++
Sbjct: 237 ELKDFNKAKEIINQAEGNGCSLSIVTYNVFINGLCKSKRVWEAVEVKRSLGEKGLKADLV 296

Query: 281 TLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQ 340
           T  T++ G C++   E  ++++++M+   +  P     + +I GL+ +G I+ A  LL +
Sbjct: 297 TYCTLVLGLCRIQEFEVGMEMMDEMIELGY-VPSEAAVSGLIEGLIKMGSIEGAFELLNK 355

Query: 341 VMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN 400
           V  + G  P +  YN+++  L +  ++EEA+ +F+ M   G+  +  TY I+IDG     
Sbjct: 356 V-GKLGVVPNLFVYNSMINSLCKTGKLEEAELLFSVMAERGLNPNDVTYTILIDGFGRRA 414

Query: 401 QLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYN 460
           +LD A  +++ ++        Y Y +MI   C+ GK+  A     E+VD G+ P +  Y 
Sbjct: 415 KLDVAFYYFNKMIECGISATVYSYNSMINCQCKFGKMKMAELLFKEMVDKGLKPTVATYT 474

Query: 461 VVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            +I G CK  +  +A+++  EM   G+ P+ VT+  L
Sbjct: 475 SLISGYCKDGLVPKAFKLYHEMTGKGIAPNTVTFTAL 511



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/364 (25%), Positives = 176/364 (48%), Gaps = 6/364 (1%)

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
           ++++L R  +      +   +   G+ P    Y  +V  LC+     +A +++ +    G
Sbjct: 196 LLNALARIRKFRQVLELFDTLVNAGVKPDCYIYTVVVKCLCELKDFNKAKEIINQAEGNG 255

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK-DVDRTRICNIYLRALCLIKNPTEL 263
              S  TY V + GLC    + +A +V + +  K    D    C + L  LC I+     
Sbjct: 256 CSLSIVTYNVFINGLCKSKRVWEAVEVKRSLGEKGLKADLVTYCTLVL-GLCRIQEFEVG 314

Query: 264 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKF-CAPDAVTFTTII 322
           + ++  M++    P    ++ +I G  KMG IE A ++LN +  GK    P+   + ++I
Sbjct: 315 MEMMDEMIELGYVPSEAAVSGLIEGLIKMGSIEGAFELLNKV--GKLGVVPNLFVYNSMI 372

Query: 323 FGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGV 382
             L   G+++EA  LL+ VM +RG +P  VTY  ++ G  R  +++ A   FN M+  G+
Sbjct: 373 NSLCKTGKLEEA-ELLFSVMAERGLNPNDVTYTILIDGFGRRAKLDVAFYYFNKMIECGI 431

Query: 383 VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVH 442
            A   +Y  +I+  C+  ++  A+  + ++V          Y ++I G C+ G + +A  
Sbjct: 432 SATVYSYNSMINCQCKFGKMKMAELLFKEMVDKGLKPTVATYTSLISGYCKDGLVPKAFK 491

Query: 443 FLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
             +E+   G+ PN V +  +I G C+++   EA ++  EM +  + P+ VT+ +L + H 
Sbjct: 492 LYHEMTGKGIAPNTVTFTALICGLCQINKMAEASKLFDEMVELKILPNEVTYNVLIEGHC 551

Query: 503 NRGN 506
             GN
Sbjct: 552 REGN 555



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 113/230 (49%), Gaps = 4/230 (1%)

Query: 277 PDVITLNTVINGFCKMGRIEEALKVLNDMV-AGKFCAPDAVTFTTIIFGLLNVGRIQEAL 335
           P+V TL+ ++N   ++ +  + L++ + +V AG    PD   +T ++  L  +    +A 
Sbjct: 188 PEVRTLSALLNALARIRKFRQVLELFDTLVNAG--VKPDCYIYTVVVKCLCELKDFNKAK 245

Query: 336 NLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG 395
            ++ Q     G S  IVTYN  + GL + +RV EA EV   +   G+ AD  TY  ++ G
Sbjct: 246 EIINQA-EGNGCSLSIVTYNVFINGLCKSKRVWEAVEVKRSLGEKGLKADLVTYCTLVLG 304

Query: 396 LCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN 455
           LC   + +      D+++    +      + +I+GL + G I  A   L ++   GV PN
Sbjct: 305 LCRIQEFEVGMEMMDEMIELGYVPSEAAVSGLIEGLIKMGSIEGAFELLNKVGKLGVVPN 364

Query: 456 IVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
           +  YN +I+  CK     EA  +   M + GLNP+ VT+ IL    G R 
Sbjct: 365 LFVYNSMINSLCKTGKLEEAELLFSVMAERGLNPNDVTYTILIDGFGRRA 414



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 110/250 (44%), Gaps = 41/250 (16%)

Query: 15  KLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGV 74
           +L  +M  +G  P+ V YT LI G+ ++G +  A++ +  M   G +PNS+TY+ LV G+
Sbjct: 665 ELLREMHGKGMQPDNVIYTILIDGFIKSGNLKKAFEFWYIMIGEGYVPNSVTYTALVNGL 724

Query: 75  LRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGK 134
            +   V  A +L    ++RM   E +  N+  +   +D L +EG +    ++   M QG 
Sbjct: 725 FKAGYVNEAKLL----FKRMLVGEAIP-NHITYGCFLDHLTKEGNMENALQLHNAMLQGS 779

Query: 135 SVNEEFACGHMIDSLCRSGRNHGASRVVYVM----------------------------- 165
             N       +I   C+ G+   A++++ VM                             
Sbjct: 780 FANT-VTYNILIRGYCQIGKFQEAAKLLDVMIGIGMVPDCITYSTFIYEYCKRGNVDAAM 838

Query: 166 ------RKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGL 219
                  +RGL P  V +N ++H  C +G   RA QL  + +  G  P++ TY  L+  L
Sbjct: 839 DMWECMLQRGLKPDRVVFNFLIHACCLNGELDRALQLRNDMMLRGLKPTQSTYHSLMVQL 898

Query: 220 CGESDLEKAR 229
              + L + +
Sbjct: 899 AQRARLTQVQ 908



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 73/154 (47%)

Query: 337 LLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 396
           L+  +M   G  P + T +A+L  L R+R+  +  E+F+ ++  GV  D   Y +V+  L
Sbjct: 176 LVVNLMRDYGLLPEVRTLSALLNALARIRKFRQVLELFDTLVNAGVKPDCYIYTVVVKCL 235

Query: 397 CESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNI 456
           CE    ++AK   +             Y   I GLC+S ++ EAV     L + G+  ++
Sbjct: 236 CELKDFNKAKEIINQAEGNGCSLSIVTYNVFINGLCKSKRVWEAVEVKRSLGEKGLKADL 295

Query: 457 VCYNVVIDGACKLSMKREAYQILREMRKNGLNPD 490
           V Y  ++ G C++       +++ EM + G  P 
Sbjct: 296 VTYCTLVLGLCRIQEFEVGMEMMDEMIELGYVPS 329



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 64/130 (49%)

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY 424
           +RV +   V N M   G++ +  T + +++ L    +  +    +D +V      D Y+Y
Sbjct: 169 KRVMDGVLVVNLMRDYGLLPEVRTLSALLNALARIRKFRQVLELFDTLVNAGVKPDCYIY 228

Query: 425 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484
             ++K LC     ++A   + +   +G + +IV YNV I+G CK     EA ++ R + +
Sbjct: 229 TVVVKCLCELKDFNKAKEIINQAEGNGCSLSIVTYNVFINGLCKSKRVWEAVEVKRSLGE 288

Query: 485 NGLNPDAVTW 494
            GL  D VT+
Sbjct: 289 KGLKADLVTY 298



 Score = 39.3 bits (90), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 1/77 (1%)

Query: 3   QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           + C    V  A  ++  M  RG  P+ V +  LIH  C  GE+D A ++ ++M   G+ P
Sbjct: 827 EYCKRGNVDAAMDMWECMLQRGLKPDRVVFNFLIHACCLNGELDRALQLRNDMMLRGLKP 886

Query: 63  NSLTY-SVLVRGVLRTR 78
              TY S++V+   R R
Sbjct: 887 TQSTYHSLMVQLAQRAR 903


>gi|356520989|ref|XP_003529141.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like [Glycine max]
          Length = 682

 Score =  194 bits (494), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 138/530 (26%), Positives = 255/530 (48%), Gaps = 41/530 (7%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M  +C      +   L   M   G  P+ ++Y TLI G  ++G++  A +VFDEMR  GV
Sbjct: 155 MKVMCKKGEFEKGRGLLTWMWGAGMSPDRITYGTLIGGVAKSGDLGFALEVFDEMRERGV 214

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ + Y++++ G  +  D  +A     ++WER+  EE +  +  ++  ++  LC+ G  
Sbjct: 215 EPDVVCYNMIIDGFFKRGDFVKAG----EMWERLLREELVFPSVVSYNVMISGLCKCGRF 270

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E   I E M + +   + F    +I  L  +G   GA +V   M  RG+ P +V+ N++
Sbjct: 271 SEGLEIWERMKKNERKCDLFTYSALIHGLSEAGDLGGARKVYEEMVGRGVRPDVVTCNAM 330

Query: 181 VHGLCKHGGCMRAYQLLEEG-----------------------------IQFGYLPSEH- 210
           ++GLCK G     ++L EE                              +  G L ++  
Sbjct: 331 LNGLCKAGNVEECFELWEEMGKCSLRNVRSYNIFLKGLFENGKVDDAMMLWDGLLEADSA 390

Query: 211 TYKVLVEGLCGESDLEKARKVLQFMLSKK---DVDRTRICNIYLRALCLIKNPTELLNVL 267
           TY V+V GLC    + +A +VL+    ++   DVD     ++ + ALC      E   V+
Sbjct: 391 TYGVVVHGLCWNGYVNRALQVLEEAEHREGGMDVDEFAYSSL-INALCKEGRLDEADGVV 449

Query: 268 VFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLN 327
             M +  C+ +    N +I+GF K  +++ A+KV  +M +GK C+   V++  +I GLL 
Sbjct: 450 ELMNKRGCKFNSHVCNVLIDGFVKHSKLDSAVKVFREM-SGKGCSLTVVSYNILINGLLR 508

Query: 328 VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADST 387
             R +EA + + +++ ++G+ P I+TY+ ++ GL+    ++ A  +++  L  G   D  
Sbjct: 509 AERFREAYDCVNEML-EKGWKPDIITYSTLIGGLYESNMMDAALRLWHQFLDTGHKPDII 567

Query: 388 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYEL 447
            Y IVI  LC S ++++A + +  +     + +   +  +++G  + G    A      +
Sbjct: 568 MYNIVIHRLCSSGKVEDALQLYSTLRQKKCV-NLVTHNTIMEGFYKVGNCEMASKIWAHI 626

Query: 448 VDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           ++  + P+I+ YN+ + G C      +A   L +    G  P A+TW IL
Sbjct: 627 LEDELQPDIISYNITLKGLCSCGRVTDAVGFLDDALVRGFLPTAITWNIL 676



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 127/481 (26%), Positives = 221/481 (45%), Gaps = 42/481 (8%)

Query: 34  TLIHGYCRTGEMDVAYKVFDEMRHC-GVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWE 92
           TL+  Y +T   + A  VF  M H  G  P   +++ L+   + +    RA    FK +E
Sbjct: 82  TLLKAYAKTRMPNEALHVFQTMPHVFGCSPTIRSFNTLLNAFVESHQWARAENF-FKYFE 140

Query: 93  RMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRS 152
             +    +S N   +  L+  +C++G   +   +   M       +    G +I  + +S
Sbjct: 141 AAR----VSPNVETYNVLMKVMCKKGEFEKGRGLLTWMWGAGMSPDRITYGTLIGGVAKS 196

Query: 153 GRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQ----LLEEGIQFGYLPS 208
           G    A  V   MR+RG+ P +V YN I+ G  K G  ++A +    LL E + F   PS
Sbjct: 197 GDLGFALEVFDEMRERGVEPDVVCYNMIIDGFFKRGDFVKAGEMWERLLREELVF---PS 253

Query: 209 EHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN--- 265
             +Y V++ GLC      +  ++ + M  KK+    R C+++  +  LI   +E  +   
Sbjct: 254 VVSYNVMISGLCKCGRFSEGLEIWERM--KKN---ERKCDLFTYS-ALIHGLSEAGDLGG 307

Query: 266 ---VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTII 322
              V   M+    +PDV+T N ++NG CK G +EE  ++  +M  GK    +  ++   +
Sbjct: 308 ARKVYEEMVGRGVRPDVVTCNAMLNGLCKAGNVEECFELWEEM--GKCSLRNVRSYNIFL 365

Query: 323 FGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR--LRRVEEAKEVFNCMLGI 380
            GL   G++ +A+ L   ++     + G+V +     G     L+ +EEA+         
Sbjct: 366 KGLFENGKVDDAMMLWDGLLEADSATYGVVVHGLCWNGYVNRALQVLEEAEHREG----- 420

Query: 381 GVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH----DNYVYAAMIKGLCRSGK 436
           G+  D   Y+ +I+ LC+  +LDEA    D +V   N      +++V   +I G  +  K
Sbjct: 421 GMDVDEFAYSSLINALCKEGRLDEA----DGVVELMNKRGCKFNSHVCNVLIDGFVKHSK 476

Query: 437 IHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRI 496
           +  AV    E+   G +  +V YN++I+G  +    REAY  + EM + G  PD +T+  
Sbjct: 477 LDSAVKVFREMSGKGCSLTVVSYNILINGLLRAERFREAYDCVNEMLEKGWKPDIITYST 536

Query: 497 L 497
           L
Sbjct: 537 L 537



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 110/477 (23%), Positives = 216/477 (45%), Gaps = 15/477 (3%)

Query: 24  GHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERA 83
           G  P + S+ TL++ +  + +   A   F       V PN  TY+VL++ + +  + E+ 
Sbjct: 108 GCSPTIRSFNTLLNAFVESHQWARAENFFKYFEAARVSPNVETYNVLMKVMCKKGEFEKG 167

Query: 84  NVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACG 143
             L+  +W        +S +   +  L+  + + G +     + ++M + + V  +  C 
Sbjct: 168 RGLLTWMWG-----AGMSPDRITYGTLIGGVAKSGDLGFALEVFDEMRE-RGVEPDVVCY 221

Query: 144 HMI-DSLCRSGRNHGASRVV-YVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGI 201
           +MI D   + G    A  +   ++R+  + PS+VSYN ++ GLCK G      ++ E   
Sbjct: 222 NMIIDGFFKRGDFVKAGEMWERLLREELVFPSVVSYNVMISGLCKCGRFSEGLEIWERMK 281

Query: 202 QFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPT 261
           +        TY  L+ GL    DL  ARKV + M+ +        CN  L  LC   N  
Sbjct: 282 KNERKCDLFTYSALIHGLSEAGDLGGARKVYEEMVGRGVRPDVVTCNAMLNGLCKAGNVE 341

Query: 262 ELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTI 321
           E   +   M +   + +V + N  + G  + G++++A+ + + ++       D+ T+  +
Sbjct: 342 ECFELWEEMGKCSLR-NVRSYNIFLKGLFENGKVDDAMMLWDGLLEA-----DSATYGVV 395

Query: 322 IFGLLNVGRIQEALNLLYQVMPQRG-YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI 380
           + GL   G +  AL +L +   + G        Y++++  L +  R++EA  V   M   
Sbjct: 396 VHGLCWNGYVNRALQVLEEAEHREGGMDVDEFAYSSLINALCKEGRLDEADGVVELMNKR 455

Query: 381 GVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEA 440
           G   +S    ++IDG  + ++LD A + + ++           Y  +I GL R+ +  EA
Sbjct: 456 GCKFNSHVCNVLIDGFVKHSKLDSAVKVFREMSGKGCSLTVVSYNILINGLLRAERFREA 515

Query: 441 VHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
              + E+++ G  P+I+ Y+ +I G  + +M   A ++  +    G  PD + + I+
Sbjct: 516 YDCVNEMLEKGWKPDIITYSTLIGGLYESNMMDAALRLWHQFLDTGHKPDIIMYNIV 572



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 105/222 (47%), Gaps = 12/222 (5%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D     S++  A K+F +M  +G    VVSY  LI+G  R      AY   +EM   G 
Sbjct: 468 IDGFVKHSKLDSAVKVFREMSGKGCSLTVVSYNILINGLLRAERFREAYDCVNEMLEKGW 527

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKE---EEDLSVNNAAFANLVDSLCRE 117
            P+ +TYS L+ G+  +  ++ A     +LW +  +   + D+ + N     ++  LC  
Sbjct: 528 KPDIITYSTLIGGLYESNMMDAA----LRLWHQFLDTGHKPDIIMYNI----VIHRLCSS 579

Query: 118 GYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
           G V +  ++   + Q K VN       +++   + G    AS++   + +  L P ++SY
Sbjct: 580 GKVEDALQLYSTLRQKKCVNL-VTHNTIMEGFYKVGNCEMASKIWAHILEDELQPDIISY 638

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGL 219
           N  + GLC  G    A   L++ +  G+LP+  T+ +LV  +
Sbjct: 639 NITLKGLCSCGRVTDAVGFLDDALVRGFLPTAITWNILVRAV 680


>gi|449462136|ref|XP_004148797.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score =  194 bits (494), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 133/466 (28%), Positives = 228/466 (48%), Gaps = 17/466 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +  LC   RV  AHKLF +M ++G  P+ V+YTT++   C+ G++D A ++    +    
Sbjct: 186 LKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDARELAGRFK---- 241

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+   Y+ L+ G+ +   +E A  L   L E M    D +V   +++ +++SLC  G V
Sbjct: 242 -PSVPVYNALIDGMCKEGRIEVAIKL---LGEMMDNGVDPNV--VSYSCIINSLCVSGNV 295

Query: 121 NEVFRI-AEDMPQGKSVN-EEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
              F + A+   +G   N   F    +I      G+ + A  +  +M + G  P++V+YN
Sbjct: 296 ELAFALFAQMFLRGCDANIHTFT--PLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYN 353

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
           +++HGLC +G    A Q+ ++  + G LP+  TY +L++G     DL  A +    M+S 
Sbjct: 354 TLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISH 413

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
                       +  LC      +  +++  M    C P+ +T NT I G C  GR+E A
Sbjct: 414 GCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTMTFNTFIKGLCGNGRVEWA 473

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
           +K+L  M  G  C P+  T+  ++  L  + + +EA  L +Q +  R   P +VTYN VL
Sbjct: 474 MKLLERM-QGHGCLPNITTYNELLDALFRMNKYEEAFGL-FQEIEARNLQPNLVTYNTVL 531

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
            G  R   + EA ++F   L  G   DS TY  +I   C+  ++  A +  + +      
Sbjct: 532 YGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVSSMKEW 591

Query: 419 HDNYV-YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463
           H + + Y ++I G C    I EA+ FL + ++ G+ PN   +N ++
Sbjct: 592 HPDIITYTSLIWGACNWMNIEEAMAFLDKAINQGICPNFATWNALV 637



 Score =  174 bits (442), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 135/531 (25%), Positives = 228/531 (42%), Gaps = 51/531 (9%)

Query: 6   GLSRVGEAH---KLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           G  RVG A    K+F+ +   G  P V  Y  L+       +  +   ++  M+  G++P
Sbjct: 118 GYKRVGSAEQALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIP 177

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           N  TY++L++ + +   V+ A+ L  ++       +    +   +  +V SLC+ G +++
Sbjct: 178 NVFTYNILLKALCKNDRVDAAHKLFVEM-----SNKGCPPDAVTYTTMVSSLCKAGKIDD 232

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
              +A        V        +ID +C+ GR   A +++  M   G+ P++VSY+ I++
Sbjct: 233 ARELAGRFKPSVPVYNA-----LIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIIN 287

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
            LC  G    A+ L  +    G   + HT+  L++G      L +A  + + M+      
Sbjct: 288 SLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEP 347

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
                N  +  LC   +  E L V   M ++ C P+V T + +I+GF K G +  A +  
Sbjct: 348 NVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETW 407

Query: 303 NDMVAG----------------------------------KFCAPDAVTFTTIIFGLLNV 328
           N M++                                   + C P+ +TF T I GL   
Sbjct: 408 NRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTMTFNTFIKGLCGN 467

Query: 329 GRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTT 388
           GR++ A+ LL + M   G  P I TYN +L  LFR+ + EEA  +F  +    +  +  T
Sbjct: 468 GRVEWAMKLL-ERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVT 526

Query: 389 YAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELV 448
           Y  V+ G   +  + EA + +   +      D+  Y  MI   C+ GK+  A   L E V
Sbjct: 527 YNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQ-LVERV 585

Query: 449 DSGVT--PNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            S     P+I+ Y  +I GAC      EA   L +    G+ P+  TW  L
Sbjct: 586 SSMKEWHPDIITYTSLIWGACNWMNIEEAMAFLDKAINQGICPNFATWNAL 636



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 115/467 (24%), Positives = 214/467 (45%), Gaps = 18/467 (3%)

Query: 31  SYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKL 90
           +Y  +I    R  EMD+   +  +M+  G+      +  ++ G  R    E+A     K+
Sbjct: 76  TYRVMIERLGRECEMDMVQYILQQMKMDGINCCEDLFICIINGYKRVGSAEQA----LKM 131

Query: 91  WERMKE---EEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMID 147
           + R+ E   +  + + N    +L+D+L  E     +  +  +M +   +   F    ++ 
Sbjct: 132 FYRIGEFGCKPTVRIYN----HLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILLK 187

Query: 148 SLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLP 207
           +LC++ R   A ++   M  +G  P  V+Y ++V  LCK G    A +L        + P
Sbjct: 188 ALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDARELAGR-----FKP 242

Query: 208 SEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVL 267
           S   Y  L++G+C E  +E A K+L  M+           +  + +LC+  N      + 
Sbjct: 243 SVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALF 302

Query: 268 VFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLN 327
             M    C  ++ T   +I G    G++ EAL +   M+    C P+ V + T+I GL +
Sbjct: 303 AQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDG-CEPNVVAYNTLIHGLCS 361

Query: 328 VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADST 387
            G ++EAL +  Q M + G  P + TY+ ++ G  +   +  A E +N M+  G   +  
Sbjct: 362 NGSLEEALQVCDQ-MQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVV 420

Query: 388 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYEL 447
           TY  ++D LC+++  D+A    + +       +   +   IKGLC +G++  A+  L  +
Sbjct: 421 TYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTMTFNTFIKGLCGNGRVEWAMKLLERM 480

Query: 448 VDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
              G  PNI  YN ++D   +++   EA+ + +E+    L P+ VT+
Sbjct: 481 QGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTY 527



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 98/382 (25%), Positives = 170/382 (44%), Gaps = 50/382 (13%)

Query: 139 EFAC-------GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCM 191
           EF C        H++D+L    +    + +   M+K GL P++ +YN ++  LCK+    
Sbjct: 137 EFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCKNDRVD 196

Query: 192 RAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYL 251
            A++L  E    G  P   TY  +V  LC    ++ AR+                     
Sbjct: 197 AAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDARE--------------------- 235

Query: 252 RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC 311
                              L  + +P V   N +I+G CK GRIE A+K+L +M+     
Sbjct: 236 -------------------LAGRFKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGV- 275

Query: 312 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK 371
            P+ V+++ II  L   G ++ A  L  Q M  RG    I T+  +++G F   ++ EA 
Sbjct: 276 DPNVVSYSCIINSLCVSGNVELAFALFAQ-MFLRGCDANIHTFTPLIKGCFMRGKLYEAL 334

Query: 372 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 431
           +++  M+  G   +   Y  +I GLC +  L+EA +  D +     + +   Y+ +I G 
Sbjct: 335 DLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGF 394

Query: 432 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 491
            +SG +  A      ++  G  PN+V Y  ++D  CK SM  +A  ++ +M   G  P+ 
Sbjct: 395 AKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNT 454

Query: 492 VTWRILDK-LHGNRGNDFGLRI 512
           +T+    K L GN   ++ +++
Sbjct: 455 MTFNTFIKGLCGNGRVEWAMKL 476


>gi|357494939|ref|XP_003617758.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519093|gb|AET00717.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 906

 Score =  194 bits (494), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 131/496 (26%), Positives = 233/496 (46%), Gaps = 13/496 (2%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           +V EA ++  +M+     PN+ +Y  LI   C+ GE++ A KV D M+  G+ PN +T +
Sbjct: 393 KVEEALRIHDEMRQDA-APNLTTYNILIDMLCKAGELEAALKVQDTMKEAGLFPNIMTVN 451

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
           +++  + + + ++ A  +   L  ++      S ++  F +L+D L R G V++ + + E
Sbjct: 452 IMIDRLCKAQKLDEACSIFLGLDHKV-----CSPDSRTFCSLIDGLGRRGRVDDAYSLYE 506

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
            M     +        +I +  + GR     ++   M  RG +P L+  NS +  + K G
Sbjct: 507 KMLDSDQIPNVVVYTSLIQNFFKCGRKEDGHKIYKEMVHRGCSPDLMLLNSYMDCVFKAG 566

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
              +   L EE    G +P   +Y +L+ GL       +  K+   M  +         N
Sbjct: 567 EVEKGRALFEEIKAQGLVPDVRSYSILIHGLVKAGFSRETYKLFYEMKEQGLHLDVLAYN 626

Query: 249 IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 308
             +   C      +   +L  M     QP V+T  +V++G  K+ R++EA  +  +    
Sbjct: 627 TVIDGFCKSGKVDKAYQLLEEMKTKGLQPTVVTYGSVVDGLAKIDRLDEAYMLFEE---A 683

Query: 309 KFCAPD--AVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 366
           K    D   V ++++I G   VGRI EA  +L ++M Q+G +P   T+N +L  L +   
Sbjct: 684 KSIGVDLNVVIYSSLIDGFGKVGRIDEAYLILEELM-QKGLTPNSYTWNCLLDALVKAEE 742

Query: 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAA 426
           ++EA+  F  M  +    ++ TY+I+I+GLC   + ++A  FW ++       +N  Y  
Sbjct: 743 IDEAQVCFQNMKNLKCSPNAMTYSIMINGLCMIRKFNKAFVFWQEMQKQGLKPNNITYTT 802

Query: 427 MIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG 486
           MI GL ++G + EA         SG  P+  CYN +I+G    +   +AY +  E R  G
Sbjct: 803 MIAGLAKAGNVMEARGLFDRFKASGGVPDSACYNAMIEGLSSANKAMDAYIVFEETRLKG 862

Query: 487 LNPDAVTWRI-LDKLH 501
              ++ T  + LD LH
Sbjct: 863 CRVNSKTCVVLLDALH 878



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 130/502 (25%), Positives = 239/502 (47%), Gaps = 8/502 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           L   +R      LF  M+  G+  NV  +TTL+  + R G +D A  + DEM+      +
Sbjct: 213 LSAANRPDPMLTLFHQMQEIGYEANVHLFTTLVRVFAREGRIDAALSLLDEMKSNSFTAD 272

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            + Y+V +    +   V+ A    +K +  MK  + L  ++  +  L+  LC+   ++E 
Sbjct: 273 LVLYNVCIDCFGKVGKVDMA----WKFFHEMK-AQGLVPDDVTYTTLIGVLCKARRLDEA 327

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             + E++   +SV   +A   MI     +G+   A  ++   +++G  PS+++YN I+  
Sbjct: 328 VELFEELDLNRSVPCVYAYNTMIMGYGSAGKFDEAYSLLERQKRKGCIPSVIAYNCILTC 387

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           L + G    A ++ +E  Q    P+  TY +L++ LC   +LE A KV   M        
Sbjct: 388 LGRKGKVEEALRIHDEMRQ-DAAPNLTTYNILIDMLCKAGELEAALKVQDTMKEAGLFPN 446

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               NI +  LC  +   E  ++ + +    C PD  T  ++I+G  + GR+++A  +  
Sbjct: 447 IMTVNIMIDRLCKAQKLDEACSIFLGLDHKVCSPDSRTFCSLIDGLGRRGRVDDAYSLYE 506

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            M+      P+ V +T++I      GR ++  + +Y+ M  RG SP ++  N+ +  +F+
Sbjct: 507 KMLDSD-QIPNVVVYTSLIQNFFKCGRKEDG-HKIYKEMVHRGCSPDLMLLNSYMDCVFK 564

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
              VE+ + +F  +   G+V D  +Y+I+I GL ++    E  + + ++       D   
Sbjct: 565 AGEVEKGRALFEEIKAQGLVPDVRSYSILIHGLVKAGFSRETYKLFYEMKEQGLHLDVLA 624

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y  +I G C+SGK+ +A   L E+   G+ P +V Y  V+DG  K+    EAY +  E +
Sbjct: 625 YNTVIDGFCKSGKVDKAYQLLEEMKTKGLQPTVVTYGSVVDGLAKIDRLDEAYMLFEEAK 684

Query: 484 KNGLNPDAVTWRILDKLHGNRG 505
             G++ + V +  L    G  G
Sbjct: 685 SIGVDLNVVIYSSLIDGFGKVG 706



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 127/497 (25%), Positives = 240/497 (48%), Gaps = 8/497 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D    + +V  A K F +MK++G VP+ V+YTTLI   C+   +D A ++F+E+     
Sbjct: 280 IDCFGKVGKVDMAWKFFHEMKAQGLVPDDVTYTTLIGVLCKARRLDEAVELFEELDLNRS 339

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P    Y+ ++ G       + A    + L ER K +  +  +  A+  ++  L R+G V
Sbjct: 340 VPCVYAYNTMIMGYGSAGKFDEA----YSLLERQKRKGCIP-SVIAYNCILTCLGRKGKV 394

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E  RI ++M Q  + N       +ID LC++G    A +V   M++ GL P++++ N +
Sbjct: 395 EEALRIHDEMRQDAAPNLT-TYNILIDMLCKAGELEAALKVQDTMKEAGLFPNIMTVNIM 453

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +  LCK      A  +          P   T+  L++GL     ++ A  + + ML    
Sbjct: 454 IDRLCKAQKLDEACSIFLGLDHKVCSPDSRTFCSLIDGLGRRGRVDDAYSLYEKMLDSDQ 513

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           +    +    ++         +   +   M+   C PD++ LN+ ++   K G +E+  +
Sbjct: 514 IPNVVVYTSLIQNFFKCGRKEDGHKIYKEMVHRGCSPDLMLLNSYMDCVFKAGEVEKG-R 572

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
            L + +  +   PD  +++ +I GL+  G  +E   L Y+ M ++G    ++ YN V+ G
Sbjct: 573 ALFEEIKAQGLVPDVRSYSILIHGLVKAGFSRETYKLFYE-MKEQGLHLDVLAYNTVIDG 631

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
             +  +V++A ++   M   G+     TY  V+DGL + ++LDEA   +++        +
Sbjct: 632 FCKSGKVDKAYQLLEEMKTKGLQPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSIGVDLN 691

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
             +Y+++I G  + G+I EA   L EL+  G+TPN   +N ++D   K     EA    +
Sbjct: 692 VVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNSYTWNCLLDALVKAEEIDEAQVCFQ 751

Query: 481 EMRKNGLNPDAVTWRIL 497
            M+    +P+A+T+ I+
Sbjct: 752 NMKNLKCSPNAMTYSIM 768



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 120/495 (24%), Positives = 219/495 (44%), Gaps = 43/495 (8%)

Query: 35  LIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERM 94
           L+  + ++ ++  A+ V + MR     P    Y+ L+ G L   +       M  L+ +M
Sbjct: 174 LVASFVKSHKLKEAFGVIEMMRKFKFRPAFSAYTTLI-GALSAANRPDP---MLTLFHQM 229

Query: 95  KEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGR 154
            +E     N   F  LV    REG ++    + ++M       +       ID   + G+
Sbjct: 230 -QEIGYEANVHLFTTLVRVFAREGRIDAALSLLDEMKSNSFTADLVLYNVCIDCFGKVGK 288

Query: 155 NHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK---------------------------- 186
              A +  + M+ +GL P  V+Y +++  LCK                            
Sbjct: 289 VDMAWKFFHEMKAQGLVPDDVTYTTLIGVLCKARRLDEAVELFEELDLNRSVPCVYAYNT 348

Query: 187 -------HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
                   G    AY LLE   + G +PS   Y  ++  L  +  +E+A ++   M    
Sbjct: 349 MIMGYGSAGKFDEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRIHDEMRQDA 408

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
             + T   NI +  LC        L V   M +    P+++T+N +I+  CK  +++EA 
Sbjct: 409 APNLTTY-NILIDMLCKAGELEAALKVQDTMKEAGLFPNIMTVNIMIDRLCKAQKLDEAC 467

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
            +   +   K C+PD+ TF ++I GL   GR+ +A + LY+ M      P +V Y ++++
Sbjct: 468 SIFLGL-DHKVCSPDSRTFCSLIDGLGRRGRVDDAYS-LYEKMLDSDQIPNVVVYTSLIQ 525

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
             F+  R E+  +++  M+  G   D       +D + ++ ++++ +  +++I     + 
Sbjct: 526 NFFKCGRKEDGHKIYKEMVHRGCSPDLMLLNSYMDCVFKAGEVEKGRALFEEIKAQGLVP 585

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           D   Y+ +I GL ++G   E     YE+ + G+  +++ YN VIDG CK     +AYQ+L
Sbjct: 586 DVRSYSILIHGLVKAGFSRETYKLFYEMKEQGLHLDVLAYNTVIDGFCKSGKVDKAYQLL 645

Query: 480 REMRKNGLNPDAVTW 494
            EM+  GL P  VT+
Sbjct: 646 EEMKTKGLQPTVVTY 660



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 98/405 (24%), Positives = 181/405 (44%), Gaps = 77/405 (19%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           MD +     V +   LF ++K++G VP+V SY+ LIHG  + G     YK+F EM+  G+
Sbjct: 559 MDCVFKAGEVEKGRALFEEIKAQGLVPDVRSYSILIHGLVKAGFSRETYKLFYEMKEQGL 618

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             + L Y+ ++ G  ++  V++A    ++L E MK  + L      + ++VD L +   +
Sbjct: 619 HLDVLAYNTVIDGFCKSGKVDKA----YQLLEEMK-TKGLQPTVVTYGSVVDGLAKIDRL 673

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E + + E   + KS+                                G+  ++V Y+S+
Sbjct: 674 DEAYMLFE---EAKSI--------------------------------GVDLNVVIYSSL 698

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G  K G    AY +LEE +Q G  P+ +T+  L++ L                +  ++
Sbjct: 699 IDGFGKVGRIDEAYLILEELMQKGLTPNSYTWNCLLDAL----------------VKAEE 742

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           +D  ++C   ++ L                   +C P+ +T + +ING C + +  +A  
Sbjct: 743 IDEAQVCFQNMKNL-------------------KCSPNAMTYSIMINGLCMIRKFNKAFV 783

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
              +M   +   P+ +T+TT+I GL   G + EA   L+      G  P    YNA++ G
Sbjct: 784 FWQEM-QKQGLKPNNITYTTMIAGLAKAGNVMEARG-LFDRFKASGGVPDSACYNAMIEG 841

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA 405
           L    +  +A  VF      G   +S T  +++D L +++ L++A
Sbjct: 842 LSSANKAMDAYIVFEETRLKGCRVNSKTCVVLLDALHKADCLEQA 886



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 135/303 (44%), Gaps = 3/303 (0%)

Query: 195 QLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRAL 254
           Q+LEE    G+  S H    LV        L++A  V++ M   K           + AL
Sbjct: 154 QILEEMSVAGFGLSNHVSVELVASFVKSHKLKEAFGVIEMMRKFKFRPAFSAYTTLIGAL 213

Query: 255 CLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPD 314
                P  +L +   M +   + +V    T++  F + GRI+ AL +L++M +  F A D
Sbjct: 214 SAANRPDPMLTLFHQMQEIGYEANVHLFTTLVRVFAREGRIDAALSLLDEMKSNSFTA-D 272

Query: 315 AVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVF 374
            V +   I     VG++  A    ++ M  +G  P  VTY  ++  L + RR++EA E+F
Sbjct: 273 LVLYNVCIDCFGKVGKVDMAWKFFHE-MKAQGLVPDDVTYTTLIGVLCKARRLDEAVELF 331

Query: 375 NCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRS 434
             +     V     Y  +I G   + + DEA    +       I     Y  ++  L R 
Sbjct: 332 EELDLNRSVPCVYAYNTMIMGYGSAGKFDEAYSLLERQKRKGCIPSVIAYNCILTCLGRK 391

Query: 435 GKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
           GK+ EA+  +++ +     PN+  YN++ID  CK      A ++   M++ GL P+ +T 
Sbjct: 392 GKVEEALR-IHDEMRQDAAPNLTTYNILIDMLCKAGELEAALKVQDTMKEAGLFPNIMTV 450

Query: 495 RIL 497
            I+
Sbjct: 451 NIM 453



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 104/462 (22%), Positives = 187/462 (40%), Gaps = 51/462 (11%)

Query: 44  EMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVN 103
           +++ A  VFDEM      P      V+V  + R +DV  A    F+  ER  ++      
Sbjct: 86  DVEEALNVFDEMSQ----P-----EVIVGVMKRLKDVNVA-FQYFRWVERKTQQAHCPEV 135

Query: 104 NAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVY 163
             AF  +   + R   ++ + +I E+M              ++ S  +S +   A  V+ 
Sbjct: 136 YNAFLMV---MARTRNLDYLEQILEEMSVAGFGLSNHVSVELVASFVKSHKLKEAFGVIE 192

Query: 164 VMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGES 223
           +MRK    P+  +Y +++  L           L  +  + GY  + H +  LV     E 
Sbjct: 193 MMRKFKFRPAFSAYTTLIGALSAANRPDPMLTLFHQMQEIGYEANVHLFTTLVRVFAREG 252

Query: 224 DLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLN 283
            ++ A                                   L++L  M       D++  N
Sbjct: 253 RIDAA-----------------------------------LSLLDEMKSNSFTADLVLYN 277

Query: 284 TVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMP 343
             I+ F K+G+++ A K  ++M A     PD VT+TT+I  L    R+ EA+ L  ++  
Sbjct: 278 VCIDCFGKVGKVDMAWKFFHEMKAQGL-VPDDVTYTTLIGVLCKARRLDEAVELFEELDL 336

Query: 344 QRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLD 403
            R   P +  YN ++ G     + +EA  +       G +     Y  ++  L    +++
Sbjct: 337 NRSV-PCVYAYNTMIMGYGSAGKFDEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVE 395

Query: 404 EAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463
           EA R  D++   +  +    Y  +I  LC++G++  A+     + ++G+ PNI+  N++I
Sbjct: 396 EALRIHDEMRQDAAPNLT-TYNILIDMLCKAGELEAALKVQDTMKEAGLFPNIMTVNIMI 454

Query: 464 DGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
           D  CK     EA  I   +     +PD+ T+  L    G RG
Sbjct: 455 DRLCKAQKLDEACSIFLGLDHKVCSPDSRTFCSLIDGLGRRG 496



 Score = 43.5 bits (101), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 3/97 (3%)

Query: 4   LCGLSRVG---EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           + GL++ G   EA  LF   K+ G VP+   Y  +I G     +   AY VF+E R  G 
Sbjct: 804 IAGLAKAGNVMEARGLFDRFKASGGVPDSACYNAMIEGLSSANKAMDAYIVFEETRLKGC 863

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEE 97
             NS T  VL+  + +   +E+A ++   L E  K +
Sbjct: 864 RVNSKTCVVLLDALHKADCLEQAAIVGAVLREMAKSQ 900


>gi|255561697|ref|XP_002521858.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538896|gb|EEF40494.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 533

 Score =  194 bits (493), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 132/509 (25%), Positives = 237/509 (46%), Gaps = 59/509 (11%)

Query: 15  KLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGV 74
           + F +M+  G +PNVV+Y T+I GYC+    D A+     M   G+ PN +T+++++ G 
Sbjct: 4   RFFKEMERNGCLPNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIING- 62

Query: 75  LRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGK 134
                                                  LCR+G + E   +  +M +  
Sbjct: 63  ---------------------------------------LCRDGRLKETSEVLVEMSRKG 83

Query: 135 SVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAY 194
            V +E     +++  C+ G  H A  +   M + GL+P++V+Y S+++ +CK G   RA 
Sbjct: 84  YVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVRNGLSPNVVTYTSLINSMCKAGNLNRAM 143

Query: 195 QLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRAL 254
           +  ++    G  P+E TY  ++ G   +  L++A +VL  M     +      N  +   
Sbjct: 144 EFFDQMHVRGLCPNERTYTTIINGFAQQGLLDEAYRVLNEMTRSGFIPSIVTYNALINGH 203

Query: 255 CLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPD 314
           C++    E + +L  M+     PDV++ +T+I+GF +   ++ A ++  +M+ GK   PD
Sbjct: 204 CVLGRMEEAIGLLQDMVGKGVLPDVVSYSTIISGFARNQELDRAFQMKVEMI-GKSVLPD 262

Query: 315 AVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVF 374
           AVT++++I GL    R+ EA + ++Q M      P   TY  ++    +   + +A  + 
Sbjct: 263 AVTYSSLIQGLCEQRRLTEACD-MFQEMLTIKLPPDEFTYTTLINAYCKEGDLNKALHLH 321

Query: 375 NCMLGIGVVADSTTYAIVIDGLCESNQLDEAKR-----FWDDIVWPSNIHDNYVY----- 424
           + M+  G + D+ TY ++I+GL +  +  EA+R     F+DD + PS +  N +      
Sbjct: 322 DEMIQKGFLPDAVTYNVLINGLNKQARSKEARRLLLKLFYDDSI-PSAVTYNTLIENCCN 380

Query: 425 ------AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI 478
                  A++KG C  G + EA      +++    PN   YNV+I G C++    +AY++
Sbjct: 381 IEFKSAVALVKGFCMKGLMDEADQVFESMINKNHKPNEAIYNVIIHGHCRIGNVLKAYKL 440

Query: 479 LREMRKNGLNPDAVTWRILDKLHGNRGND 507
            +EM      P  VT   L K     G D
Sbjct: 441 YKEMVHVDFVPHTVTVLALVKALFTEGMD 469



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 127/506 (25%), Positives = 233/506 (46%), Gaps = 27/506 (5%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C L R  EA      M  +G  PN++++  +I+G CR G +    +V  EM   G 
Sbjct: 25  IDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIINGLCRDGRLKETSEVLVEMSRKGY 84

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P+ +TY+ LV G  +  +  +A VL  ++         LS N   + +L++S+C+ G +
Sbjct: 85  VPDEVTYNTLVNGYCKEGNFHQALVLHAEMVRN-----GLSPNVVTYTSLINSMCKAGNL 139

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           N      + M        E     +I+   + G    A RV+  M + G  PS+V+YN++
Sbjct: 140 NRAMEFFDQMHVRGLCPNERTYTTIINGFAQQGLLDEAYRVLNEMTRSGFIPSIVTYNAL 199

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++G C  G    A  LL++ +  G LP   +Y  ++ G     +L++A ++   M+ K  
Sbjct: 200 INGHCVLGRMEEAIGLLQDMVGKGVLPDVVSYSTIISGFARNQELDRAFQMKVEMIGKSV 259

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           +      +  ++ LC  +  TE  ++   ML  +  PD  T  T+IN +CK G + +AL 
Sbjct: 260 LPDAVTYSSLIQGLCEQRRLTEACDMFQEMLTIKLPPDEFTYTTLINAYCKEGDLNKALH 319

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           + ++M+   F  PDAVT+  +I GL    R +EA  LL ++       P  VTYN ++  
Sbjct: 320 LHDEMIQKGFL-PDAVTYNVLINGLNKQARSKEARRLLLKLFYDDSI-PSAVTYNTLIE- 376

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
                         NC        +  +   ++ G C    +DEA + ++ ++  ++  +
Sbjct: 377 --------------NC-----CNIEFKSAVALVKGFCMKGLMDEADQVFESMINKNHKPN 417

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
             +Y  +I G CR G + +A     E+V     P+ V    ++       M  E  +++ 
Sbjct: 418 EAIYNVIIHGHCRIGNVLKAYKLYKEMVHVDFVPHTVTVLALVKALFTEGMDGELNEVIG 477

Query: 481 EMRKNGLNPDAVTWRILDKLHGNRGN 506
           ++ ++    DA   ++L +++   GN
Sbjct: 478 DILRSCKLTDAELSKVLVEINQKEGN 503



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 90/358 (25%), Positives = 167/358 (46%), Gaps = 30/358 (8%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C L R+ EA  L  DM  +G +P+VVSY+T+I G+ R  E+D A+++  EM    VLP++
Sbjct: 204 CVLGRMEEAIGLLQDMVGKGVLPDVVSYSTIISGFARNQELDRAFQMKVEMIGKSVLPDA 263

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           +TYS L++G+   R +  A   MF+    +K    L  +   +  L+++ C+EG +N+  
Sbjct: 264 VTYSSLIQGLCEQRRLTEA-CDMFQEMLTIK----LPPDEFTYTTLINAYCKEGDLNKAL 318

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
            + ++M Q   + +      +I+ L +  R+  A R++  +      PS V+YN+++   
Sbjct: 319 HLHDEMIQKGFLPDAVTYNVLINGLNKQARSKEARRLLLKLFYDDSIPSAVTYNTLIENC 378

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
           C               I+F       +   LV+G C +  +++A +V + M++K      
Sbjct: 379 CN--------------IEF------KSAVALVKGFCMKGLMDEADQVFESMINKNHKPNE 418

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
            I N+ +   C I N  +   +   M+     P  +T+  ++      G   E  +V+ D
Sbjct: 419 AIYNVIIHGHCRIGNVLKAYKLYKEMVHVDFVPHTVTVLALVKALFTEGMDGELNEVIGD 478

Query: 305 MVAGKFCAPDAVTFTTIIFGL-LNVGRIQEALNLLYQVMPQRGYSPGIVT-YNAVLRG 360
           ++  + C       + ++  +    G +    NLL + M + G  P   T  NA+ RG
Sbjct: 479 IL--RSCKLTDAELSKVLVEINQKEGNMDMVFNLLTE-MAKDGLIPSTGTPTNAIARG 533



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 34/58 (58%)

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            + F  E+  +G  PN+V YN +IDG CKL    EA+  LR M   GL P+ +T+ ++
Sbjct: 2   GLRFFKEMERNGCLPNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMI 59


>gi|222628656|gb|EEE60788.1| hypothetical protein OsJ_14372 [Oryza sativa Japonica Group]
          Length = 748

 Score =  194 bits (493), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 142/525 (27%), Positives = 252/525 (48%), Gaps = 46/525 (8%)

Query: 6   GLSRVGE---AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           G S+ GE   A++LF+ M  +   P+VV+Y +LI G C+T EM  + +V ++M   G+ P
Sbjct: 166 GFSKEGEVDKAYELFYKMIEQSVSPDVVTYNSLIDGLCKTKEMVKSERVLEQMVDAGIRP 225

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWE----------------------RMKEEEDL 100
           N+ TY+ L+ G   T  + + +V +FK                         R+KE +D+
Sbjct: 226 NNKTYNSLIYG-YSTAGMWKESVRVFKEMSSSGLIPCVVNCNSFIHALCRHNRIKEAKDI 284

Query: 101 ---------SVNNAAFANLVDSLCREG-YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC 150
                      N  +++ L+     EG + N    +   + +G   N  F    +I++  
Sbjct: 285 FDSMVLKGPKPNIISYSTLLHGYAAEGCFANMNSLVNLMVSKGIVPNHRF-FNILINAYA 343

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
           R G    A  +   M+ +G+ P  V++ +++  LC+ G    A       +  G  PSE 
Sbjct: 344 RCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEA 403

Query: 211 TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALC--LIKNP--TELLNV 266
            Y+ L++G C   +L KA++++  M++K D+    +   Y  ++   L K     E  ++
Sbjct: 404 VYRCLIQGCCNHGELVKAKELISEMMNK-DIPPPGV--KYFSSIINNLFKEGRVAEGKDI 460

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
           +  M+QT  +P+V+T N+++ G+C +G +EEA  +L D +A     P+   + T++ G  
Sbjct: 461 MDLMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALL-DAMASIGIEPNCYIYGTLVDGYC 519

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
             GRI +AL + ++ M  +G  P  V YN +L GLF+ RR   AK++F+ M+  G     
Sbjct: 520 KNGRIDDALTV-FRDMLHKGVKPTSVLYNIILHGLFQARRTTAAKKMFHEMIESGTTVSI 578

Query: 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE 446
            TY +V+ GLC +N  DEA    + +   +   D   +  +I  + + G+  EA      
Sbjct: 579 QTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAMLKVGRRQEAKELFAA 638

Query: 447 LVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 491
           +   G+ P +  YN++I    K     EA  +   + K+G  PD+
Sbjct: 639 ISTYGLVPTVHTYNLMISNLIKEESYEEADNLFISVEKSGRAPDS 683



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 116/471 (24%), Positives = 233/471 (49%), Gaps = 6/471 (1%)

Query: 27  PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVL 86
           P+V SY TLI G+ + GE+D AY++F +M    V P+ +TY+ L+ G+ +T+++ ++   
Sbjct: 155 PDVCSYNTLIDGFSKEGEVDKAYELFYKMIEQSVSPDVVTYNSLIDGLCKTKEMVKSE-- 212

Query: 87  MFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMI 146
             ++ E+M +   +  NN  + +L+      G   E  R+ ++M     +     C   I
Sbjct: 213 --RVLEQMVDA-GIRPNNKTYNSLIYGYSTAGMWKESVRVFKEMSSSGLIPCVVNCNSFI 269

Query: 147 DSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL 206
            +LCR  R   A  +   M  +G  P+++SY++++HG    G       L+   +  G +
Sbjct: 270 HALCRHNRIKEAKDIFDSMVLKGPKPNIISYSTLLHGYAAEGCFANMNSLVNLMVSKGIV 329

Query: 207 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 266
           P+   + +L+        ++KA  + + M +K  +  T      + +LC I    + L+ 
Sbjct: 330 PNHRFFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHK 389

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
              M+     P       +I G C  G + +A +++++M+      P    F++II  L 
Sbjct: 390 FNHMVDIGVPPSEAVYRCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLF 449

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
             GR+ E  +++  +M Q G  P +VT+N+++ G   +  +EEA  + + M  IG+  + 
Sbjct: 450 KEGRVAEGKDIM-DLMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNC 508

Query: 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE 446
             Y  ++DG C++ ++D+A   + D++       + +Y  ++ GL ++ +   A    +E
Sbjct: 509 YIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYNIILHGLFQARRTTAAKKMFHE 568

Query: 447 LVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           +++SG T +I  Y VV+ G C+ +   EA  +L ++    +  D +T+ I+
Sbjct: 569 MIESGTTVSIQTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIV 619



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 132/504 (26%), Positives = 217/504 (43%), Gaps = 11/504 (2%)

Query: 6   GLSRVG---EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           G S  G   E+ ++F +M S G +P VV+  + IH  CR   +  A  +FD M   G  P
Sbjct: 236 GYSTAGMWKESVRVFKEMSSSGLIPCVVNCNSFIHALCRHNRIKEAKDIFDSMVLKGPKP 295

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           N ++YS L+ G          N L+      +   + +  N+  F  L+++  R G +++
Sbjct: 296 NIISYSTLLHGYAAEGCFANMNSLV-----NLMVSKGIVPNHRFFNILINAYARCGMMDK 350

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
              I EDM     + +      +I SLCR GR   A      M   G+ PS   Y  ++ 
Sbjct: 351 AMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYRCLIQ 410

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTY-KVLVEGLCGESDLEKARKVLQFMLSKKDV 241
           G C HG  ++A +L+ E +     P    Y   ++  L  E  + + + ++  M+     
Sbjct: 411 GCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLFKEGRVAEGKDIMDLMVQTGQR 470

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
                 N  +   CL+ N  E   +L  M     +P+     T+++G+CK GRI++AL V
Sbjct: 471 PNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTV 530

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
             DM+  K   P +V +  I+ GL    R   A  + ++ M + G +  I TY  VL GL
Sbjct: 531 FRDMLH-KGVKPTSVLYNIILHGLFQARRTTAAKKMFHE-MIESGTTVSIQTYGVVLGGL 588

Query: 362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
            R    +EA  +   +  + V  D  T+ IVI  + +  +  EAK  +  I     +   
Sbjct: 589 CRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAMLKVGRRQEAKELFAAISTYGLVPTV 648

Query: 422 YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
           + Y  MI  L +     EA +    +  SG  P+    N ++    K +   +A   L  
Sbjct: 649 HTYNLMISNLIKEESYEEADNLFISVEKSGRAPDSRLLNHIVRMLLKKAEVAKASNYLSI 708

Query: 482 MRKNGLNPDAVTWRILDKLHGNRG 505
           + +N L  +A T  +L  L    G
Sbjct: 709 IDENNLTLEASTISLLASLFSREG 732



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 96/392 (24%), Positives = 180/392 (45%), Gaps = 44/392 (11%)

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
           +ID   R  R   A  V   + + GL P + SYN+++ G  K G   +AY+L  + I+  
Sbjct: 128 LIDCYRRMHRPELALAVFGRLLRTGLGPDVCSYNTLIDGFSKEGEVDKAYELFYKMIEQS 187

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK-------------------------- 238
             P   TY  L++GLC   ++ K+ +VL+ M+                            
Sbjct: 188 VSPDVVTYNSLIDGLCKTKEMVKSERVLEQMVDAGIRPNNKTYNSLIYGYSTAGMWKESV 247

Query: 239 ---KDVDRTRI------CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGF 289
              K++  + +      CN ++ ALC      E  ++   M+    +P++I+ +T+++G+
Sbjct: 248 RVFKEMSSSGLIPCVVNCNSFIHALCRHNRIKEAKDIFDSMVLKGPKPNIISYSTLLHGY 307

Query: 290 CKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSP 349
              G       ++N MV+ K   P+   F  +I      G + +A+ L+++ M  +G  P
Sbjct: 308 AAEGCFANMNSLVNLMVS-KGIVPNHRFFNILINAYARCGMMDKAM-LIFEDMQNKGMIP 365

Query: 350 GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFW 409
             VT+  V+  L R+ R+++A   FN M+ IGV      Y  +I G C   +L +AK   
Sbjct: 366 DTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYRCLIQGCCNHGELVKAKELI 425

Query: 410 DDI----VWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDG 465
            ++    + P  +     ++++I  L + G++ E    +  +V +G  PN+V +N +++G
Sbjct: 426 SEMMNKDIPPPGVK---YFSSIINNLFKEGRVAEGKDIMDLMVQTGQRPNVVTFNSLMEG 482

Query: 466 ACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            C +    EA+ +L  M   G+ P+   +  L
Sbjct: 483 YCLVGNMEEAFALLDAMASIGIEPNCYIYGTL 514



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/302 (22%), Positives = 125/302 (41%), Gaps = 40/302 (13%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M+  C +  + EA  L   M S G  PN   Y TL+ GYC+ G +D A  VF +M H GV
Sbjct: 480 MEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGV 539

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P S+ Y++++ G+ + R    A     K++  M  E   +V+   +  ++  LCR    
Sbjct: 540 KPTSVLYNIILHGLFQARRTTAAK----KMFHEMI-ESGTTVSIQTYGVVLGGLCRNNCT 594

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E   + E +         FA     D                          ++++N +
Sbjct: 595 DEANMLLEKL---------FAMNVKFD--------------------------IITFNIV 619

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +  + K G    A +L      +G +P+ HTY +++  L  E   E+A  +   +     
Sbjct: 620 ISAMLKVGRRQEAKELFAAISTYGLVPTVHTYNLMISNLIKEESYEEADNLFISVEKSGR 679

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
              +R+ N  +R L       +  N L  + +     +  T++ + + F + G+  E +K
Sbjct: 680 APDSRLLNHIVRMLLKKAEVAKASNYLSIIDENNLTLEASTISLLASLFSREGKCREHIK 739

Query: 301 VL 302
           +L
Sbjct: 740 LL 741



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 96/191 (50%), Gaps = 3/191 (1%)

Query: 312 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK 371
           AP   T+  +I     + R + AL +  +++ + G  P + +YN ++ G  +   V++A 
Sbjct: 119 APTIYTYNILIDCYRRMHRPELALAVFGRLL-RTGLGPDVCSYNTLIDGFSKEGEVDKAY 177

Query: 372 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 431
           E+F  M+   V  D  TY  +IDGLC++ ++ +++R  + +V      +N  Y ++I G 
Sbjct: 178 ELFYKMIEQSVSPDVVTYNSLIDGLCKTKEMVKSERVLEQMVDAGIRPNNKTYNSLIYGY 237

Query: 432 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 491
             +G   E+V    E+  SG+ P +V  N  I   C+ +  +EA  I   M   G  P+ 
Sbjct: 238 STAGMWKESVRVFKEMSSSGLIPCVVNCNSFIHALCRHNRIKEAKDIFDSMVLKGPKPNI 297

Query: 492 VTWRILDKLHG 502
           +++  L  LHG
Sbjct: 298 ISYSTL--LHG 306


>gi|356497651|ref|XP_003517673.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Glycine max]
          Length = 827

 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 125/502 (24%), Positives = 237/502 (47%), Gaps = 11/502 (2%)

Query: 8   SRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRT----GEMDVAYKVFDEMRHCGVLPN 63
           +RV    ++F ++K RG  PN+ +YT +++ YC        M  A  +  ++   G  P 
Sbjct: 296 NRVEFVRRVFEELKDRGPSPNIYTYTIMMNFYCSDVGCDAGMRQAAVILGKIYRSGEKPT 355

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TYS  + G+ +  +VE A +L+     R     +  +N+ +F +++   C+ G V E 
Sbjct: 356 VVTYSTYIHGLCKVGNVEAALMLI-----RNLHYTNQPLNSHSFNDVIYGFCKRGEVFEA 410

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            ++ E+M     + + ++   +I++ C  G       ++  M    + PS+VSY S++HG
Sbjct: 411 LQVLEEMKSSGILPDVYSYSILINAFCGKGDVMKCLDLMEEMEHSQIKPSIVSYTSLIHG 470

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LCK      A  +               Y+ L++G C + D++ A K+L+ M+  + V  
Sbjct: 471 LCKKNMLQNAVDIFHSIGASSCKYDSTVYETLIDGFCMQGDMDSAIKLLEEMICNELVPT 530

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
              C   +R    +    + L V   ML+    PD I  N +++G C+ G  +EAL +L 
Sbjct: 531 AFSCRSLIRGYYKLGLFDQALEVFNAMLRDGIWPDTIACNYILDGSCRAGYFKEALTLLE 590

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           D     F   +  ++  II+ L   G  + AL LL +++ +R   P +V Y+ ++ G  +
Sbjct: 591 DFQEHGF-NLNPHSYNAIIYKLCKEGYPERALELLPRML-KRNVLPSVVNYSTLISGFAK 648

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
               + A  +F  M+ +G+  +  TY I++     S+++ EA   + ++       D   
Sbjct: 649 QSNFKRAVNLFTRMVKVGITFNIATYTILMSIFSHSHKMHEAYGIFKEMKERGLCLDQIS 708

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y  +I G C + ++ +A     E+   G +PN++ Y  +IDG CK +    A  +  +M 
Sbjct: 709 YTTLIVGFCNNREMKKAWALFEEMSREGCSPNVITYTCIIDGFCKSNRIDLATWVFDKMN 768

Query: 484 KNGLNPDAVTWRILDKLHGNRG 505
           ++ + PD VT+ +L   +   G
Sbjct: 769 RDSVIPDVVTYTVLIDWYHKHG 790



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 102/422 (24%), Positives = 200/422 (47%), Gaps = 11/422 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C    V EA ++  +MKS G +P+V SY+ LI+ +C  G++     + +EM H  + P+
Sbjct: 401 FCKRGEVFEALQVLEEMKSSGILPDVYSYSILINAFCGKGDVMKCLDLMEEMEHSQIKPS 460

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            ++Y+ L+ G+ +   ++ A  +   +            ++  +  L+D  C +G ++  
Sbjct: 461 IVSYTSLIHGLCKKNMLQNAVDIFHSI-----GASSCKYDSTVYETLIDGFCMQGDMDSA 515

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            ++ E+M   + V   F+C  +I    + G    A  V   M + G+ P  ++ N I+ G
Sbjct: 516 IKLLEEMICNELVPTAFSCRSLIRGYYKLGLFDQALEVFNAMLRDGIWPDTIACNYILDG 575

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            C+ G    A  LLE+  + G+  + H+Y  ++  LC E   E+A ++L  ML +  +  
Sbjct: 576 SCRAGYFKEALTLLEDFQEHGFNLNPHSYNAIIYKLCKEGYPERALELLPRMLKRNVLPS 635

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               +  +       N    +N+   M++     ++ T   +++ F    ++ EA  +  
Sbjct: 636 VVNYSTLISGFAKQSNFKRAVNLFTRMVKVGITFNIATYTILMSIFSHSHKMHEAYGIFK 695

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           +M     C  D +++TT+I G  N   +++A   L++ M + G SP ++TY  ++ G  +
Sbjct: 696 EMKERGLCL-DQISYTTLIVGFCNNREMKKAWA-LFEEMSREGCSPNVITYTCIIDGFCK 753

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI----VWPSNIH 419
             R++ A  VF+ M    V+ D  TY ++ID   +    D+A + +D +    V P +I 
Sbjct: 754 SNRIDLATWVFDKMNRDSVIPDVVTYTVLIDWYHKHGYFDQAHKLYDVMKDKGVLPDDIT 813

Query: 420 DN 421
            N
Sbjct: 814 HN 815



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/375 (24%), Positives = 173/375 (46%), Gaps = 48/375 (12%)

Query: 141 ACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGC---MR-AYQL 196
            C  ++  L  + R     RV   ++ RG +P++ +Y  +++  C   GC   MR A  +
Sbjct: 284 TCNFLLKCLVEANRVEFVRRVFEELKDRGPSPNIYTYTIMMNFYCSDVGCDAGMRQAAVI 343

Query: 197 LEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCL 256
           L +  + G  P+  TY   + GLC   ++E A                         L L
Sbjct: 344 LGKIYRSGEKPTVVTYSTYIHGLCKVGNVEAA-------------------------LML 378

Query: 257 IKNPTELLNVLVFMLQTQCQP-DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA 315
           I+N           L    QP +  + N VI GFCK G + EAL+VL +M +     PD 
Sbjct: 379 IRN-----------LHYTNQPLNSHSFNDVIYGFCKRGEVFEALQVLEEMKSSGI-LPDV 426

Query: 316 VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN 375
            +++ +I      G + + L+L+ + M      P IV+Y +++ GL +   ++ A ++F+
Sbjct: 427 YSYSILINAFCGKGDVMKCLDLMEE-MEHSQIKPSIVSYTSLIHGLCKKNMLQNAVDIFH 485

Query: 376 CMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG 435
            +       DST Y  +IDG C    +D A +  ++++    +   +   ++I+G  + G
Sbjct: 486 SIGASSCKYDSTVYETLIDGFCMQGDMDSAIKLLEEMICNELVPTAFSCRSLIRGYYKLG 545

Query: 436 KIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG--LNP---D 490
              +A+     ++  G+ P+ +  N ++DG+C+    +EA  +L + +++G  LNP   +
Sbjct: 546 LFDQALEVFNAMLRDGIWPDTIACNYILDGSCRAGYFKEALTLLEDFQEHGFNLNPHSYN 605

Query: 491 AVTWRILDKLHGNRG 505
           A+ +++  + +  R 
Sbjct: 606 AIIYKLCKEGYPERA 620



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 72/335 (21%), Positives = 147/335 (43%), Gaps = 23/335 (6%)

Query: 168 RGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEK 227
            G + S+  +  IVH     G  +  + LL +                + G C E+  + 
Sbjct: 186 HGFSHSISCFRIIVHAFALAGMRLEVWALLRD----------------IVGFCNEAKYDT 229

Query: 228 ARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTE-LLNVLVFMLQTQCQPDVITLNTVI 286
                 F+ S + V+R+ +    L ++    +  E  L+V         +PD+ T N ++
Sbjct: 230 FELFSAFLDSPQHVERSGVVFDVLISVFASNSMLENALDVFSNAKHVGLEPDIRTCNFLL 289

Query: 287 NGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTII-FGLLNVG---RIQEALNLLYQVM 342
               +  R+E   +V  ++   +  +P+  T+T ++ F   +VG    +++A  +L ++ 
Sbjct: 290 KCLVEANRVEFVRRVFEEL-KDRGPSPNIYTYTIMMNFYCSDVGCDAGMRQAAVILGKIY 348

Query: 343 PQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQL 402
            + G  P +VTY+  + GL ++  VE A  +   +       +S ++  VI G C+  ++
Sbjct: 349 -RSGEKPTVVTYSTYIHGLCKVGNVEAALMLIRNLHYTNQPLNSHSFNDVIYGFCKRGEV 407

Query: 403 DEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVV 462
            EA +  +++     + D Y Y+ +I   C  G + + +  + E+  S + P+IV Y  +
Sbjct: 408 FEALQVLEEMKSSGILPDVYSYSILINAFCGKGDVMKCLDLMEEMEHSQIKPSIVSYTSL 467

Query: 463 IDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           I G CK +M + A  I   +  +    D+  +  L
Sbjct: 468 IHGLCKKNMLQNAVDIFHSIGASSCKYDSTVYETL 502



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/229 (22%), Positives = 105/229 (45%), Gaps = 12/229 (5%)

Query: 280 ITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLY 339
           +  + +I+ F     +E AL V ++        PD  T   ++  L+   R+ E +  ++
Sbjct: 248 VVFDVLISVFASNSMLENALDVFSNAKHVGL-EPDIRTCNFLLKCLVEANRV-EFVRRVF 305

Query: 340 QVMPQRGYSPGIVTYNAVLRGLFRLRRV------EEAKEVFNCMLGIGVVADSTTYAIVI 393
           + +  RG SP I TY  ++   F    V       +A  +   +   G      TY+  I
Sbjct: 306 EELKDRGPSPNIYTYTIMMN--FYCSDVGCDAGMRQAAVILGKIYRSGEKPTVVTYSTYI 363

Query: 394 DGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVT 453
            GLC+   ++ A     ++ + +   +++ +  +I G C+ G++ EA+  L E+  SG+ 
Sbjct: 364 HGLCKVGNVEAALMLIRNLHYTNQPLNSHSFNDVIYGFCKRGEVFEALQVLEEMKSSGIL 423

Query: 454 PNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
           P++  Y+++I+  C      +   ++ EM  + + P  V++  L  +HG
Sbjct: 424 PDVYSYSILINAFCGKGDVMKCLDLMEEMEHSQIKPSIVSYTSL--IHG 470



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 95/225 (42%), Gaps = 5/225 (2%)

Query: 286 INGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQR 345
           I GFC   + +        + + +      V F  +I    +   ++ AL++ +      
Sbjct: 218 IVGFCNEAKYDTFELFSAFLDSPQHVERSGVVFDVLISVFASNSMLENALDV-FSNAKHV 276

Query: 346 GYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA 405
           G  P I T N +L+ L    RVE  + VF  +   G   +  TY I+++  C     D  
Sbjct: 277 GLEPDIRTCNFLLKCLVEANRVEFVRRVFEELKDRGPSPNIYTYTIMMNFYCSDVGCDAG 336

Query: 406 KRFWDDI---VWPSNIHDNYV-YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNV 461
            R    I   ++ S      V Y+  I GLC+ G +  A+  +  L  +    N   +N 
Sbjct: 337 MRQAAVILGKIYRSGEKPTVVTYSTYIHGLCKVGNVEAALMLIRNLHYTNQPLNSHSFND 396

Query: 462 VIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           VI G CK     EA Q+L EM+ +G+ PD  ++ IL      +G+
Sbjct: 397 VIYGFCKRGEVFEALQVLEEMKSSGILPDVYSYSILINAFCGKGD 441



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 43/70 (61%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C  +R+  A  +F  M     +P+VV+YT LI  Y + G  D A+K++D M+  GV
Sbjct: 748 IDGFCKSNRIDLATWVFDKMNRDSVIPDVVTYTVLIDWYHKHGYFDQAHKLYDVMKDKGV 807

Query: 61  LPNSLTYSVL 70
           LP+ +T++VL
Sbjct: 808 LPDDITHNVL 817


>gi|255556711|ref|XP_002519389.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541456|gb|EEF43006.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 634

 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 128/497 (25%), Positives = 227/497 (45%), Gaps = 57/497 (11%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M + G  P+ + + +L+H YCR+G+   AYK+  +M  CG  P  + Y++L+ G+  T D
Sbjct: 2   MITEGCYPSPMIFNSLVHAYCRSGDYFYAYKLLKKMVICGYQPGYVVYNILIGGICSTED 61

Query: 80  VERANVLMFKLWERMKE---EEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSV 136
           +    V+   L ER      E  + +N     N    LC  G   + + +  +M     +
Sbjct: 62  LPSMEVI--GLAERAYNEMLEMGVVLNKVNVCNFTRCLCCIGKFEKAYNVIREMMSKGFI 119

Query: 137 NEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQL 196
            +      +I  LC + +   A ++   M++ G+TP + +Y +++   CK G   +A   
Sbjct: 120 PDSSTYSKVIGYLCNASKVEKAFQLFQEMKRNGITPDVYTYTTLLDRFCKVGLIEQARNW 179

Query: 197 LEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCL 256
            +E  Q G  P+  TY  L+        L +A ++ + MLS                   
Sbjct: 180 FDEMQQDGCAPNVVTYTALIHAYLKTRKLSRANEIFEMMLS------------------- 220

Query: 257 IKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL----ND-------- 304
                             C P+++T   +I+G CK G  E+A ++     ND        
Sbjct: 221 ----------------NGCVPNIVTYTALIDGHCKAGETEKACQIYARMKNDKVDIPDVD 264

Query: 305 ----MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
               +V  +   P+ VT+  ++ GL    +++EA +LL + M   G  P  + Y+A++ G
Sbjct: 265 IYFRIVDSELKEPNVVTYGALVDGLCKAHKVKEARDLL-ETMSLEGCEPNQIIYDALIDG 323

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
             ++ +++EA+EVF  MLG G   +  TY+ +ID L +  +LD A +    ++  S   +
Sbjct: 324 FCKVGKLDEAQEVFTKMLGHGCSPNVYTYSSLIDKLFKDKRLDLALKVLTKMLENSCAPN 383

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
             +Y  M+ GLC+ GK  EA   +  + + G  PN+V Y  +IDG  K        ++L+
Sbjct: 384 VVIYTEMVDGLCKVGKTDEAYRLMLMMEEKGCYPNVVTYTAMIDGFGKAGRVDRCLELLQ 443

Query: 481 EMRKNGLNPDAVTWRIL 497
            M   G  P+ +T+R+L
Sbjct: 444 LMTSKGCAPNFITYRVL 460



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 132/499 (26%), Positives = 230/499 (46%), Gaps = 41/499 (8%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC  S+V +A +LF +MK  G  P+V +YTTL+  +C+ G ++ A   FDEM+  G  PN
Sbjct: 132 LCNASKVEKAFQLFQEMKRNGITPDVYTYTTLLDRFCKVGLIEQARNWFDEMQQDGCAPN 191

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY+ L+   L+TR + RAN    +++E M     +  N   +  L+D  C+ G   + 
Sbjct: 192 VVTYTALIHAYLKTRKLSRAN----EIFEMMLSNGCVP-NIVTYTALIDGHCKAGETEKA 246

Query: 124 FRIAEDMPQGKS-----------VNEEF------ACGHMIDSLCRSGRNHGASRVVYVMR 166
            +I   M   K            V+ E         G ++D LC++ +   A  ++  M 
Sbjct: 247 CQIYARMKNDKVDIPDVDIYFRIVDSELKEPNVVTYGALVDGLCKAHKVKEARDLLETMS 306

Query: 167 KRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLE 226
             G  P+ + Y++++ G CK G    A ++  + +  G  P+ +TY  L++ L  +  L+
Sbjct: 307 LEGCEPNQIIYDALIDGFCKVGKLDEAQEVFTKMLGHGCSPNVYTYSSLIDKLFKDKRLD 366

Query: 227 KARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVI 286
            A KVL  ML         I    +  LC +    E   +++ M +  C P+V+T   +I
Sbjct: 367 LALKVLTKMLENSCAPNVVIYTEMVDGLCKVGKTDEAYRLMLMMEEKGCYPNVVTYTAMI 426

Query: 287 NGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
           +GF K GR++  L++L  M + K CAP+ +T+  +I      G + +A  LL + M Q  
Sbjct: 427 DGFGKAGRVDRCLELLQLMTS-KGCAPNFITYRVLINHCCAAGLLDDAHKLLEE-MKQTY 484

Query: 347 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI-------GVVADSTTYAIVIDGLCES 399
           +   I  Y  V+ G             F   LG+       G V     Y ++ID   ++
Sbjct: 485 WPKHIGMYRKVIEGF---------SHEFVASLGLLAELSEDGSVPILPVYKLLIDNFIKA 535

Query: 400 NQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCY 459
            +L+ A    +++   S  + N  Y ++I+ L  + K+ +A     ++   G  P +   
Sbjct: 536 GRLEMALELHEELSSFSAAYQN-TYVSLIESLTLACKVDKAFKLYSDMTRRGFVPELSML 594

Query: 460 NVVIDGACKLSMKREAYQI 478
             +I G  ++    EA Q+
Sbjct: 595 VCLIKGLLRVGKWEEALQL 613



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 111/374 (29%), Positives = 187/374 (50%), Gaps = 28/374 (7%)

Query: 164 VMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGES 223
           +M   G  PS + +NS+VH  C+ G    AY+LL++ +  GY P    Y +L+ G+C   
Sbjct: 1   MMITEGCYPSPMIFNSLVHAYCRSGDYFYAYKLLKKMVICGYQPGYVVYNILIGGICSTE 60

Query: 224 DLEK------ARKVLQFMLSKKDV-DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQ 276
           DL        A +    ML    V ++  +CN + R LC I    +  NV+  M+     
Sbjct: 61  DLPSMEVIGLAERAYNEMLEMGVVLNKVNVCN-FTRCLCCIGKFEKAYNVIREMMSKGFI 119

Query: 277 PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALN 336
           PD  T + VI   C   ++E+A ++  +M       PD  T+TT++     VG I++A N
Sbjct: 120 PDSSTYSKVIGYLCNASKVEKAFQLFQEMKRNGI-TPDVYTYTTLLDRFCKVGLIEQARN 178

Query: 337 LLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 396
             +  M Q G +P +VTY A++    + R++  A E+F  ML  G V +  TY  +IDG 
Sbjct: 179 -WFDEMQQDGCAPNVVTYTALIHAYLKTRKLSRANEIFEMMLSNGCVPNIVTYTALIDGH 237

Query: 397 CESNQLDEAKRFW-----DDIVWP----------SNIHDNYV--YAAMIKGLCRSGKIHE 439
           C++ + ++A + +     D +  P          S + +  V  Y A++ GLC++ K+ E
Sbjct: 238 CKAGETEKACQIYARMKNDKVDIPDVDIYFRIVDSELKEPNVVTYGALVDGLCKAHKVKE 297

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW-RILD 498
           A   L  +   G  PN + Y+ +IDG CK+    EA ++  +M  +G +P+  T+  ++D
Sbjct: 298 ARDLLETMSLEGCEPNQIIYDALIDGFCKVGKLDEAQEVFTKMLGHGCSPNVYTYSSLID 357

Query: 499 KLHGNRGNDFGLRI 512
           KL  ++  D  L++
Sbjct: 358 KLFKDKRLDLALKV 371



 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 133/501 (26%), Positives = 236/501 (47%), Gaps = 35/501 (6%)

Query: 2   DQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVL 61
           + L  +  +G A + + +M   G V N V+        C  G+ + AY V  EM   G +
Sbjct: 60  EDLPSMEVIGLAERAYNEMLEMGVVLNKVNVCNFTRCLCCIGKFEKAYNVIREMMSKGFI 119

Query: 62  PNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVN 121
           P+S TYS ++  +     VE+A    F+L++ MK    ++ +   +  L+D  C+ G + 
Sbjct: 120 PDSSTYSKVIGYLCNASKVEKA----FQLFQEMK-RNGITPDVYTYTTLLDRFCKVGLIE 174

Query: 122 EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
           +     ++M Q            +I +  ++ +   A+ +  +M   G  P++V+Y +++
Sbjct: 175 QARNWFDEMQQDGCAPNVVTYTALIHAYLKTRKLSRANEIFEMMLSNGCVPNIVTYTALI 234

Query: 182 HGLCKHGGCMRAYQLL-----------EEGIQFGYLPSEH------TYKVLVEGLCGESD 224
            G CK G   +A Q+            +  I F  + SE       TY  LV+GLC    
Sbjct: 235 DGHCKAGETEKACQIYARMKNDKVDIPDVDIYFRIVDSELKEPNVVTYGALVDGLCKAHK 294

Query: 225 LEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNT 284
           +++AR +L+ M  +       I +  +   C +    E   V   ML   C P+V T ++
Sbjct: 295 VKEARDLLETMSLEGCEPNQIIYDALIDGFCKVGKLDEAQEVFTKMLGHGCSPNVYTYSS 354

Query: 285 VINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ 344
           +I+   K  R++ ALKVL  M+    CAP+ V +T ++ GL  VG+  EA  L+  +M +
Sbjct: 355 LIDKLFKDKRLDLALKVLTKMLENS-CAPNVVIYTEMVDGLCKVGKTDEAYRLML-MMEE 412

Query: 345 RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 404
           +G  P +VTY A++ G  +  RV+   E+   M   G   +  TY ++I+  C +  LD+
Sbjct: 413 KGCYPNVVTYTAMIDGFGKAGRVDRCLELLQLMTSKGCAPNFITYRVLINHCCAAGLLDD 472

Query: 405 AKRFWDDI---VWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNV 461
           A +  +++    WP +I    +Y  +I+G   S +   ++  L EL + G  P +  Y +
Sbjct: 473 AHKLLEEMKQTYWPKHIG---MYRKVIEGF--SHEFVASLGLLAELSEDGSVPILPVYKL 527

Query: 462 VIDG---ACKLSMKREAYQIL 479
           +ID    A +L M  E ++ L
Sbjct: 528 LIDNFIKAGRLEMALELHEEL 548


>gi|302775252|ref|XP_002971043.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
 gi|300161025|gb|EFJ27641.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
          Length = 457

 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 119/452 (26%), Positives = 226/452 (50%), Gaps = 11/452 (2%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M   G  PN V++  L++G+ + G      ++ + M   G+ PN ++Y+ L+ G+ +   
Sbjct: 1   MDRTGCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARGIQPNVVSYNGLLEGLCKLER 60

Query: 80  VERANVLMFKLWERM-KEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNE 138
              A  L+  +  R  +   DL      ++ L+   C+ G V E   + +++       +
Sbjct: 61  WHEAEELVRDMISRGGRSTPDL----VTYSTLLSGYCKAGKVEESRELLKEVISRGLRPD 116

Query: 139 EFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLE 198
                 ++ SLC+S R   A  ++  M + G  P+L+++N+++ G C+      A  LL+
Sbjct: 117 ALMYTKVMASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQ 176

Query: 199 EGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIK 258
                G      TY  L++GLC    L++A ++L+ M +          + ++  LC   
Sbjct: 177 TMAASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSG 236

Query: 259 NPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTF 318
                  VL  M  +   P+V+T NT+++G CK G+I+ AL+++  M +   C  + V +
Sbjct: 237 KVLNAHQVLEQMRDSDHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGY 296

Query: 319 TTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCML 378
           +T++ GL  +GR QEA +++ + M + G  P +VTY++++ GL +  ++EEA E    M 
Sbjct: 297 STVVDGLCKLGRTQEARSVM-EAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMA 355

Query: 379 GIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN-----YVYAAMIKGLCR 433
             G   ++ TY  ++ GLC   +L EA+R  +++       D+       Y A+I GLC+
Sbjct: 356 MEGCKPNAVTYCSLVHGLCSCGRLAEAERMVEEMSSGGGGGDHCPPSVSTYNALIGGLCK 415

Query: 434 SGKIHEAVHFLYELVDSGVTPNIVCYNVVIDG 465
           +G+I +A+ F   +   G  P+ V Y+ +++G
Sbjct: 416 AGRIDDALKFFQRMRSQGCDPDGVSYSTIVEG 447



 Score =  191 bits (484), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 115/412 (27%), Positives = 218/412 (52%), Gaps = 13/412 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRG--HVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHC 58
           ++ LC L R  EA +L  DM SRG    P++V+Y+TL+ GYC+ G+++ + ++  E+   
Sbjct: 52  LEGLCKLERWHEAEELVRDMISRGGRSTPDLVTYSTLLSGYCKAGKVEESRELLKEVISR 111

Query: 59  GVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREG 118
           G+ P++L Y+ ++  + ++     A +                     F  L+   CRE 
Sbjct: 112 GLRPDALMYTKVMASLCKS-----ARLGEALELLEEMIRAGCCPTLITFNTLISGCCREK 166

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
            +     + + M       +      ++D LC++GR   A +++  M+  G  P +V+Y+
Sbjct: 167 NLEMADSLLQTMAASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYS 226

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
           S V+GLCK G  + A+Q+LE+     + P+  TY  +++GLC    ++ A ++++ M S 
Sbjct: 227 SFVYGLCKSGKVLNAHQVLEQMRDSDHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASS 286

Query: 239 KDVDRTRIC-NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
                  +  +  +  LC +    E  +V+  M +  C+PDV+T ++++NG CK G+IEE
Sbjct: 287 DGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEE 346

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGY----SPGIVT 353
           A++ + +M A + C P+AVT+ +++ GL + GR+ EA  ++ ++    G      P + T
Sbjct: 347 AVEAVREM-AMEGCKPNAVTYCSLVHGLCSCGRLAEAERMVEEMSSGGGGGDHCPPSVST 405

Query: 354 YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA 405
           YNA++ GL +  R+++A + F  M   G   D  +Y+ +++GL  S +  +A
Sbjct: 406 YNALIGGLCKAGRIDDALKFFQRMRSQGCDPDGVSYSTIVEGLARSGRALQA 457



 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 128/453 (28%), Positives = 213/453 (47%), Gaps = 19/453 (4%)

Query: 55  MRHCGVLPNSLTYSVLVRGVL---RTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLV 111
           M   G  PNS+T++ LV G     R  D ER       L E M     +  N  ++  L+
Sbjct: 1   MDRTGCPPNSVTFNALVNGFSKQGRPGDCER-------LLETMAAR-GIQPNVVSYNGLL 52

Query: 112 DSLCREGYVNEVFRIAEDMPQ--GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRG 169
           + LC+    +E   +  DM    G+S  +      ++   C++G+   +  ++  +  RG
Sbjct: 53  EGLCKLERWHEAEELVRDMISRGGRSTPDLVTYSTLLSGYCKAGKVEESRELLKEVISRG 112

Query: 170 LTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKAR 229
           L P  + Y  ++  LCK      A +LLEE I+ G  P+  T+  L+ G C E +LE A 
Sbjct: 113 LRPDALMYTKVMASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMAD 172

Query: 230 KVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGF 289
            +LQ M +          N  +  LC      E   +L  M  + C PDV+  ++ + G 
Sbjct: 173 SLLQTMAASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGL 232

Query: 290 CKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSP 349
           CK G++  A +VL  M       P+ VT+ TI+ GL   G+I  AL ++ Q+    G   
Sbjct: 233 CKSGKVLNAHQVLEQMRDSDH-DPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGL 291

Query: 350 GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFW 409
            +V Y+ V+ GL +L R +EA+ V   M   G   D  TY+ +++GLC++ +++EA    
Sbjct: 292 NVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAV 351

Query: 410 DDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG-----VTPNIVCYNVVID 464
            ++       +   Y +++ GLC  G++ EA   + E+   G       P++  YN +I 
Sbjct: 352 REMAMEGCKPNAVTYCSLVHGLCSCGRLAEAERMVEEMSSGGGGGDHCPPSVSTYNALIG 411

Query: 465 GACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           G CK     +A +  + MR  G +PD V++  +
Sbjct: 412 GLCKAGRIDDALKFFQRMRSQGCDPDGVSYSTI 444



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 112/361 (31%), Positives = 188/361 (52%), Gaps = 7/361 (1%)

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
           +++   + GR     R++  M  RG+ P++VSYN ++ GLCK      A +L+ + I  G
Sbjct: 16  LVNGFSKQGRPGDCERLLETMAARGIQPNVVSYNGLLEGLCKLERWHEAEELVRDMISRG 75

Query: 205 --YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTE 262
               P   TY  L+ G C    +E++R++L+ ++S+       +    + +LC      E
Sbjct: 76  GRSTPDLVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVMASLCKSARLGE 135

Query: 263 LLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTII 322
            L +L  M++  C P +IT NT+I+G C+   +E A  +L  M A    A D VT+ T++
Sbjct: 136 ALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQTMAASGVKA-DVVTYNTLM 194

Query: 323 FGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGV 382
            GL   GR+QEA  LL + M   G +P +V Y++ + GL +  +V  A +V   M     
Sbjct: 195 DGLCKAGRLQEAEQLLER-MKASGCAPDVVAYSSFVYGLCKSGKVLNAHQVLEQMRDSDH 253

Query: 383 VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV-YAAMIKGLCRSGKIHEAV 441
             +  TY  ++DGLC+S ++D A    + +        N V Y+ ++ GLC+ G+  EA 
Sbjct: 254 DPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEAR 313

Query: 442 HFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLH 501
             +  +  +G  P++V Y+ +++G CK     EA + +REM   G  P+AVT+  L  +H
Sbjct: 314 SVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSL--VH 371

Query: 502 G 502
           G
Sbjct: 372 G 372


>gi|356540349|ref|XP_003538652.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Glycine max]
          Length = 1024

 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 128/500 (25%), Positives = 237/500 (47%), Gaps = 27/500 (5%)

Query: 6   GLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSL 65
           G  ++G   ++   M + G  PN   + +L+H YC++ +   AYK+F +M  CG  P  L
Sbjct: 319 GKGQLGRCKRILSMMMTEGCYPNREMFNSLVHAYCKSRDYSYAYKLFKKMIKCGCQPGYL 378

Query: 66  TYSVLVRGVLRTRDVERANVLMFKLWERMKEEE-DLSV--NNAAFANLVDSLCREGYVNE 122
            Y++ +  +    ++  +++L  +L E+   E  DL V  N    +N    LC  G  ++
Sbjct: 379 LYNIFIGSICSNEELPGSDLL--ELAEKAYSEMLDLGVVLNKVNVSNFARCLCGAGKFDK 436

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
            F I  +M     V ++     +I  LC + +   A  +   M+K G+ PS+ +Y  ++ 
Sbjct: 437 AFEIICEMMSKGFVPDDSTYSKVIGFLCDASKVEKAFLLFEEMKKNGIVPSVYTYTILID 496

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFML---SKK 239
             CK G   +A    +E ++    P+  TY  L+        +  A K+ + ML   SK 
Sbjct: 497 SFCKAGLIQQARNWFDEMLRDNCTPNVVTYTSLIHAYLKARKVFDANKLFEMMLLEGSKP 556

Query: 240 DV--------------DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQ-PDVITLNT 284
           +V                 + C IY R    I++    +++   +    C+ P++IT   
Sbjct: 557 NVVTYTALIDGHCKAGQIDKACQIYARMQGDIESSD--IDMYFKLDDNDCETPNIITYGA 614

Query: 285 VINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ 344
           +++G CK  R+EEA ++L+ M     C P+ + +  +I G    G+++ A  +  + M +
Sbjct: 615 LVDGLCKANRVEEAHELLDTMSVNG-CEPNQIVYDALIDGFCKTGKLENAQEVFVK-MSE 672

Query: 345 RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 404
           RGY P + TY++++  LF+ +R++   +V + ML      +   Y  +IDGLC+  + +E
Sbjct: 673 RGYCPNLYTYSSLINSLFKEKRLDLVLKVLSKMLENSCTPNVVIYTDMIDGLCKVGKTEE 732

Query: 405 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
           A R    +       +   Y AMI G  + GKI + +    ++   G  PN + Y V+I+
Sbjct: 733 AYRLMLKMEEVGCYPNVITYTAMIDGFGKIGKIEQCLELYRDMCSKGCAPNFITYRVLIN 792

Query: 465 GACKLSMKREAYQILREMRK 484
             C   +  EA+++L EM++
Sbjct: 793 HCCSTGLLDEAHRLLDEMKQ 812



 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 138/498 (27%), Positives = 238/498 (47%), Gaps = 37/498 (7%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC  S+V +A  LF +MK  G VP+V +YT LI  +C+ G +  A   FDEM      PN
Sbjct: 463 LCDASKVEKAFLLFEEMKKNGIVPSVYTYTILIDSFCKAGLIQQARNWFDEMLRDNCTPN 522

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY+ L+   L+ R V  AN    KL+E M  E     N   +  L+D  C+ G +++ 
Sbjct: 523 VVTYTSLIHAYLKARKVFDAN----KLFEMMLLEGS-KPNVVTYTALIDGHCKAGQIDKA 577

Query: 124 FRIAEDMP---QGKSVNEEFAC-------------GHMIDSLCRSGRNHGASRVVYVMRK 167
            +I   M    +   ++  F               G ++D LC++ R   A  ++  M  
Sbjct: 578 CQIYARMQGDIESSDIDMYFKLDDNDCETPNIITYGALVDGLCKANRVEEAHELLDTMSV 637

Query: 168 RGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEK 227
            G  P+ + Y++++ G CK G    A ++  +  + GY P+ +TY  L+  L  E  L+ 
Sbjct: 638 NGCEPNQIVYDALIDGFCKTGKLENAQEVFVKMSERGYCPNLYTYSSLINSLFKEKRLDL 697

Query: 228 ARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVIN 287
             KVL  ML         I    +  LC +    E   +++ M +  C P+VIT   +I+
Sbjct: 698 VLKVLSKMLENSCTPNVVIYTDMIDGLCKVGKTEEAYRLMLKMEEVGCYPNVITYTAMID 757

Query: 288 GFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGY 347
           GF K+G+IE+ L++  DM + K CAP+ +T+  +I    + G + EA  LL + M Q  +
Sbjct: 758 GFGKIGKIEQCLELYRDMCS-KGCAPNFITYRVLINHCCSTGLLDEAHRLLDE-MKQTYW 815

Query: 348 SPGIVTYNAVLRGLFR-----LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQL 402
              I +Y  ++ G  R     +  ++E  E  +       V   + Y I+ID   ++ +L
Sbjct: 816 PRHISSYRKIIEGFNREFITSIGLLDELSENES-------VPVESLYRILIDNFIKAGRL 868

Query: 403 DEAKRFWDDI-VWPS-NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYN 460
           + A    ++I   PS  + + Y+Y ++I+ L  + K+ +A      +++  V P +  + 
Sbjct: 869 EGALNLLEEISSSPSLAVANKYLYTSLIESLSHASKVDKAFELYASMINKNVVPELSTFV 928

Query: 461 VVIDGACKLSMKREAYQI 478
            +I G  ++   +EA Q+
Sbjct: 929 HLIKGLTRVGKWQEALQL 946



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 126/503 (25%), Positives = 235/503 (46%), Gaps = 31/503 (6%)

Query: 2   DQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVL 61
           ++L G   +  A K + +M   G V N V+ +      C  G+ D A+++  EM   G +
Sbjct: 391 EELPGSDLLELAEKAYSEMLDLGVVLNKVNVSNFARCLCGAGKFDKAFEIICEMMSKGFV 450

Query: 62  PNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVN 121
           P+  TYS ++  +     VE+A    F L+E MK +  +  +   +  L+DS C+ G + 
Sbjct: 451 PDDSTYSKVIGFLCDASKVEKA----FLLFEEMK-KNGIVPSVYTYTILIDSFCKAGLIQ 505

Query: 122 EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
           +     ++M +            +I +  ++ +   A+++  +M   G  P++V+Y +++
Sbjct: 506 QARNWFDEMLRDNCTPNVVTYTSLIHAYLKARKVFDANKLFEMMLLEGSKPNVVTYTALI 565

Query: 182 HGLCKHGGCMRAYQL---LEEGIQFGYL-------------PSEHTYKVLVEGLCGESDL 225
            G CK G   +A Q+   ++  I+   +             P+  TY  LV+GLC  + +
Sbjct: 566 DGHCKAGQIDKACQIYARMQGDIESSDIDMYFKLDDNDCETPNIITYGALVDGLCKANRV 625

Query: 226 EKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTV 285
           E+A ++L  M          + +  +   C          V V M +    P++ T +++
Sbjct: 626 EEAHELLDTMSVNGCEPNQIVYDALIDGFCKTGKLENAQEVFVKMSERGYCPNLYTYSSL 685

Query: 286 INGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQR 345
           IN   K  R++  LKVL+ M+    C P+ V +T +I GL  VG+ +EA  L+ + M + 
Sbjct: 686 INSLFKEKRLDLVLKVLSKMLENS-CTPNVVIYTDMIDGLCKVGKTEEAYRLMLK-MEEV 743

Query: 346 GYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA 405
           G  P ++TY A++ G  ++ ++E+  E++  M   G   +  TY ++I+  C +  LDEA
Sbjct: 744 GCYPNVITYTAMIDGFGKIGKIEQCLELYRDMCSKGCAPNFITYRVLINHCCSTGLLDEA 803

Query: 406 KRFWDDI---VWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVV 462
            R  D++    WP +I     Y  +I+G  R  +   ++  L EL ++   P    Y ++
Sbjct: 804 HRLLDEMKQTYWPRHISS---YRKIIEGFNR--EFITSIGLLDELSENESVPVESLYRIL 858

Query: 463 IDGACKLSMKREAYQILREMRKN 485
           ID   K      A  +L E+  +
Sbjct: 859 IDNFIKAGRLEGALNLLEEISSS 881



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 124/529 (23%), Positives = 222/529 (41%), Gaps = 54/529 (10%)

Query: 35  LIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWE-- 92
           LI   CR G  +VA +    ++  G   +  TY+ L++  LR   ++ A ++  ++    
Sbjct: 176 LIQKCCRNGMWNVALEELGRLKDFGYKASPTTYNALIQVFLRADKLDTAFLVHREMSNSG 235

Query: 93  -RMK------------------------EEEDLSVNNAAFANLVDSLCREGYVNEVFRIA 127
            RM                         E+E+   +   +  +V  LC      E   I 
Sbjct: 236 FRMDGCTLGCFAYSLCKAGRCGDALSLLEKEEFVPDTVFYNRMVSGLCEASLFQEAMDIL 295

Query: 128 EDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKH 187
           + M     +        ++      G+     R++ +M   G  P+   +NS+VH  CK 
Sbjct: 296 DRMRSISCIPNVVTYRILLSGCLGKGQLGRCKRILSMMMTEGCYPNREMFNSLVHAYCKS 355

Query: 188 GGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLC------GESDLEKARKVLQFMLSKKDV 241
                AY+L ++ I+ G  P    Y + +  +C      G   LE A K    ML    V
Sbjct: 356 RDYSYAYKLFKKMIKCGCQPGYLLYNIFIGSICSNEELPGSDLLELAEKAYSEMLDLGVV 415

Query: 242 -DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
            ++  + N + R LC      +   ++  M+     PD  T + VI   C   ++E+A  
Sbjct: 416 LNKVNVSN-FARCLCGAGKFDKAFEIICEMMSKGFVPDDSTYSKVIGFLCDASKVEKAFL 474

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +  +M       P   T+T +I      G IQ+A N  +  M +   +P +VTY +++  
Sbjct: 475 LFEEMKKNGI-VPSVYTYTILIDSFCKAGLIQQARN-WFDEMLRDNCTPNVVTYTSLIHA 532

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFW---------DD 411
             + R+V +A ++F  ML  G   +  TY  +IDG C++ Q+D+A + +          D
Sbjct: 533 YLKARKVFDANKLFEMMLLEGSKPNVVTYTALIDGHCKAGQIDKACQIYARMQGDIESSD 592

Query: 412 IVWPSNIHDN-------YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
           I     + DN         Y A++ GLC++ ++ EA   L  +  +G  PN + Y+ +ID
Sbjct: 593 IDMYFKLDDNDCETPNIITYGALVDGLCKANRVEEAHELLDTMSVNGCEPNQIVYDALID 652

Query: 465 GACKLSMKREAYQILREMRKNGLNPDAVTW-RILDKLHGNRGNDFGLRI 512
           G CK      A ++  +M + G  P+  T+  +++ L   +  D  L++
Sbjct: 653 GFCKTGKLENAQEVFVKMSERGYCPNLYTYSSLINSLFKEKRLDLVLKV 701



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 91/374 (24%), Positives = 171/374 (45%), Gaps = 44/374 (11%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC  +RV EAH+L   M   G  PN + Y  LI G+C+TG+++ A +VF +M   G 
Sbjct: 616 VDGLCKANRVEEAHELLDTMSVNGCEPNQIVYDALIDGFCKTGKLENAQEVFVKMSERGY 675

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN  TYS L+  + + + ++    L+ K+  +M  E   + N   + +++D LC+ G  
Sbjct: 676 CPNLYTYSSLINSLFKEKRLD----LVLKVLSKML-ENSCTPNVVIYTDMIDGLCKVGKT 730

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E +R+   M +            MID   + G+      +   M  +G  P+ ++Y  +
Sbjct: 731 EEAYRLMLKMEEVGCYPNVITYTAMIDGFGKIGKIEQCLELYRDMCSKGCAPNFITYRVL 790

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++  C  G    A++LL+E  Q  +     +Y+ ++EG   E                  
Sbjct: 791 INHCCSTGLLDEAHRLLDEMKQTYWPRHISSYRKIIEGFNRE------------------ 832

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                    ++ ++ L+   +E  +V V  L             +I+ F K GR+E AL 
Sbjct: 833 ---------FITSIGLLDELSENESVPVESL----------YRILIDNFIKAGRLEGALN 873

Query: 301 VLNDMVAGKFCA-PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           +L ++ +    A  +   +T++I  L +  ++ +A   LY  M  +   P + T+  +++
Sbjct: 874 LLEEISSSPSLAVANKYLYTSLIESLSHASKVDKAFE-LYASMINKNVVPELSTFVHLIK 932

Query: 360 GLFRLRRVEEAKEV 373
           GL R+ + +EA ++
Sbjct: 933 GLTRVGKWQEALQL 946



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 85/361 (23%), Positives = 160/361 (44%), Gaps = 13/361 (3%)

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVS--YNSIVHGLCKHGGCMRAYQLLEEGIQ 202
           +I+ LC +  N+      ++M+ R     L+    N ++   C++G    A + L     
Sbjct: 139 LIELLCCNAVNNDRVSHKFLMQIRDDDRELLRKLLNFLIQKCCRNGMWNVALEELGRLKD 198

Query: 203 FGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTE 262
           FGY  S  TY  L++       L+ A  V + M       R   C +   A  L K    
Sbjct: 199 FGYKASPTTYNALIQVFLRADKLDTAFLVHREM--SNSGFRMDGCTLGCFAYSLCK-AGR 255

Query: 263 LLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTII 322
             + L  + + +  PD +  N +++G C+    +EA+ +L+ M +   C P+ VT+  ++
Sbjct: 256 CGDALSLLEKEEFVPDTVFYNRMVSGLCEASLFQEAMDILDRMRSIS-CIPNVVTYRILL 314

Query: 323 FGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGV 382
            G L  G++     +L  +M +  Y P    +N+++    + R    A ++F  M+  G 
Sbjct: 315 SGCLGKGQLGRCKRILSMMMTEGCY-PNREMFNSLVHAYCKSRDYSYAYKLFKKMIKCGC 373

Query: 383 VADSTTYAIVIDGLCE------SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGK 436
                 Y I I  +C       S+ L+ A++ + +++    + +    +   + LC +GK
Sbjct: 374 QPGYLLYNIFIGSICSNEELPGSDLLELAEKAYSEMLDLGVVLNKVNVSNFARCLCGAGK 433

Query: 437 IHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRI 496
             +A   + E++  G  P+   Y+ VI   C  S   +A+ +  EM+KNG+ P   T+ I
Sbjct: 434 FDKAFEIICEMMSKGFVPDDSTYSKVIGFLCDASKVEKAFLLFEEMKKNGIVPSVYTYTI 493

Query: 497 L 497
           L
Sbjct: 494 L 494


>gi|302813796|ref|XP_002988583.1| hypothetical protein SELMODRAFT_42378 [Selaginella moellendorffii]
 gi|300143690|gb|EFJ10379.1| hypothetical protein SELMODRAFT_42378 [Selaginella moellendorffii]
          Length = 478

 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 130/477 (27%), Positives = 241/477 (50%), Gaps = 20/477 (4%)

Query: 31  SYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKL 90
           SY  L+ GYC  GE+  A ++  EM+   + PN  T+  +++G  +   +E A       
Sbjct: 1   SYNLLVRGYCEAGEVCKALRLVKEMKARDLAPNEATHGEILKGFCQIGRMEEA------- 53

Query: 91  WERMKEEEDLS-VNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKS-VNEEFACGHMIDS 148
            E  +   D S V+ A +  L+D  C+   +++ F +AE+M      +     C  ++  
Sbjct: 54  LEHFRSVIDTSGVDPAMYNTLIDGFCKVAKLSDAFNLAEEMIVDLGWMPSAVTCNTLVAG 113

Query: 149 LCRSGRNHGASRVVYVMRKR----GLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
           LC++G    A ++   M +R        +L + N+++ GLC+ G    A +L+ E  +  
Sbjct: 114 LCKAGSFDKAVKLFTRMAERTKRNSTMVTLAAANALIDGLCRAGRVDEALELVFERCKDK 173

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC-NIYLRALCLIKNPTEL 263
            + +  TY +L++GLC    +E   ++L+ M + + ++      N  +   C +    + 
Sbjct: 174 AMINAVTYGILIQGLCKSKRVEDGLRLLEEMSTSRGLNPDAATYNSIVAGFCELDMVEQA 233

Query: 264 LNVLVFMLQ-TQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTII 322
           L     + Q  +C PD + + T++NG CK GR  +AL++L +M     C P +  +  +I
Sbjct: 234 LEFFSNVTQGNKCAPDPVMIGTLVNGLCKSGRSLQALELLEEM-DRVGCQPSSQVYCLMI 292

Query: 323 FGLLNVGRIQEALNLLYQVMPQRGYSPGIV-TYNAVLRGLFRLRRVEEAKEVFNCMLGIG 381
             L N G   +A  LL++ + ++G +P    TY  ++ GL++  R E+A+     +L   
Sbjct: 293 EELCNSGEADKACKLLHETL-RKGRAPANTGTYTMIVDGLYKTHRPEKARRHLKGILSSS 351

Query: 382 VVADS-TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEA 440
           + A S  T   +IDGLC+S +  EA+ F   +    +  + ++Y +++ GLC++ K+ EA
Sbjct: 352 LSAPSVVTSCAIIDGLCKSGRFSEARWFLLSMGQMGSKANTHIYNSLLGGLCKAAKMGEA 411

Query: 441 VHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           + F +E+ D G+ P++V YN+++DG CK+    EA  +   M      P AVT++ L
Sbjct: 412 LAFFHEMQDEGL-PSVVTYNILLDGFCKVVKIEEACAVFVAMVDAKCLPTAVTYKTL 467



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 121/440 (27%), Positives = 201/440 (45%), Gaps = 47/440 (10%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEM-RHCGVLP 62
            C + R+ EA + F  +     V   + Y TLI G+C+  ++  A+ + +EM    G +P
Sbjct: 44  FCQIGRMEEALEHFRSVIDTSGVDPAM-YNTLIDGFCKVAKLSDAFNLAEEMIVDLGWMP 102

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           +++T + LV G+ +    ++A  L  ++ ER K    + V  AA   L+D LCR G V+E
Sbjct: 103 SAVTCNTLVAGLCKAGSFDKAVKLFTRMAERTKRNSTM-VTLAAANALIDGLCRAGRVDE 161

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMR-KRGLTPSLVSYNSIV 181
              +  +  + K++      G +I  LC+S R     R++  M   RGL P   +YNSIV
Sbjct: 162 ALELVFERCKDKAMINAVTYGILIQGLCKSKRVEDGLRLLEEMSTSRGLNPDAATYNSIV 221

Query: 182 ------------------------------------HGLCKHGGCMRAYQLLEEGIQFGY 205
                                               +GLCK G  ++A +LLEE  + G 
Sbjct: 222 AGFCELDMVEQALEFFSNVTQGNKCAPDPVMIGTLVNGLCKSGRSLQALELLEEMDRVGC 281

Query: 206 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK-KDVDRTRICNIYLRALCLIKNPTELL 264
            PS   Y +++E LC   + +KA K+L   L K +    T    + +  L     P +  
Sbjct: 282 QPSSQVYCLMIEELCNSGEADKACKLLHETLRKGRAPANTGTYTMIVDGLYKTHRPEKAR 341

Query: 265 NVLVFMLQTQ-CQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCA-PDAVTFTTII 322
             L  +L +    P V+T   +I+G CK GR  EA   L  M  G+  +  +   + +++
Sbjct: 342 RHLKGILSSSLSAPSVVTSCAIIDGLCKSGRFSEARWFLLSM--GQMGSKANTHIYNSLL 399

Query: 323 FGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGV 382
            GL    ++ EAL   ++ M   G  P +VTYN +L G  ++ ++EEA  VF  M+    
Sbjct: 400 GGLCKAAKMGEALAFFHE-MQDEGL-PSVVTYNILLDGFCKVVKIEEACAVFVAMVDAKC 457

Query: 383 VADSTTYAIVIDGLCESNQL 402
           +  + TY  + +G   S ++
Sbjct: 458 LPTAVTYKTLTEGFTRSGKM 477


>gi|302767258|ref|XP_002967049.1| hypothetical protein SELMODRAFT_70269 [Selaginella moellendorffii]
 gi|300165040|gb|EFJ31648.1| hypothetical protein SELMODRAFT_70269 [Selaginella moellendorffii]
          Length = 454

 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 128/456 (28%), Positives = 211/456 (46%), Gaps = 19/456 (4%)

Query: 27  PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVL 86
           PN +SY  L+   CRTG++D A     EM    ++P+  TY+V++  + + R + RA   
Sbjct: 8   PNALSYCYLVKALCRTGKIDKACSTIAEMAREKLVPDVFTYNVVIDTLCKARRISRA--- 64

Query: 87  MFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMI 146
             + +E M E + ++ N      L+  LC+ G V +   +   M        +     +I
Sbjct: 65  -IEFFETMPEPDVVTYNT-----LLGGLCKNGRVAQACSLFGSMEGAGITPSDVTYTTLI 118

Query: 147 DSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL 206
           D  C+  +   A  ++ +M  R  +P++ SY SI++GLCK+    +AYQL EE    G  
Sbjct: 119 DVFCKMCQFETAYGLLQLMASRKCSPTVYSYCSIINGLCKNRKVDQAYQLFEEMKLAGCK 178

Query: 207 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 266
           P   TY  L+ GLC +  L +A+ +L  M+              +  LC      E   +
Sbjct: 179 PDRVTYNTLIHGLCVKQRLHEAKDLLTVMVENSFQPDKITFTALIEGLCTTDRIKEAFVL 238

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
              M +  C PD++T   +++  C   ++  AL V+ +  A     P+AV   T IF  L
Sbjct: 239 FQGMAKQGCAPDLVTHTVLVSKLCIRRKLRPALSVVRNYPA----CPEAVILYTPIFREL 294

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
              R  +    L Q M +RG +P +VTY A  +GL   +    A   F  ML  G+  D 
Sbjct: 295 GRRRGFDRAARLLQKMARRGVAPNVVTYTAFFKGLGDWKEGMRAYREFRRMLEQGIEPDM 354

Query: 387 TTYAIVIDGLCESNQLDEAK---RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
             Y +++DG C++N+LD A+   R+ D    P NI     Y  ++   CR GK+      
Sbjct: 355 VAYNVLVDGFCKANRLDMAEKMVRYMDQSGLPPNI---VTYNTLVGHHCRKGKVEAIGEL 411

Query: 444 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           L+ +V  G  P++  ++ ++ G  ++     AY  L
Sbjct: 412 LHTMVSRGRQPDVATWSTLVAGLFRVGQVDAAYSFL 447



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 120/411 (29%), Positives = 193/411 (46%), Gaps = 10/411 (2%)

Query: 97  EEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNH 156
            +D   N  ++  LV +LCR G +++      +M + K V + F    +ID+LC++ R  
Sbjct: 3   SQDCKPNALSYCYLVKALCRTGKIDKACSTIAEMAREKLVPDVFTYNVVIDTLCKARRIS 62

Query: 157 GASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLV 216
            A      M +    P +V+YN+++ GLCK+G   +A  L       G  PS+ TY  L+
Sbjct: 63  RAIEFFETMPE----PDVVTYNTLLGGLCKNGRVAQACSLFGSMEGAGITPSDVTYTTLI 118

Query: 217 EGLCGESDLEKARKVLQFMLSKK-DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQC 275
           +  C     E A  +LQ M S+K        C+I +  LC  +   +   +   M    C
Sbjct: 119 DVFCKMCQFETAYGLLQLMASRKCSPTVYSYCSI-INGLCKNRKVDQAYQLFEEMKLAGC 177

Query: 276 QPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEAL 335
           +PD +T NT+I+G C   R+ EA  +L  MV   F  PD +TFT +I GL    RI+EA 
Sbjct: 178 KPDRVTYNTLIHGLCVKQRLHEAKDLLTVMVENSF-QPDKITFTALIEGLCTTDRIKEAF 236

Query: 336 NLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG 395
            +L+Q M ++G +P +VT+  ++  L   R++  A  V               Y  +   
Sbjct: 237 -VLFQGMAKQGCAPDLVTHTVLVSKLCIRRKLRPALSVVRNYPACPEAV--ILYTPIFRE 293

Query: 396 LCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN 455
           L      D A R    +       +   Y A  KGL    +   A      +++ G+ P+
Sbjct: 294 LGRRRGFDRAARLLQKMARRGVAPNVVTYTAFFKGLGDWKEGMRAYREFRRMLEQGIEPD 353

Query: 456 IVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           +V YNV++DG CK +    A +++R M ++GL P+ VT+  L   H  +G 
Sbjct: 354 MVAYNVLVDGFCKANRLDMAEKMVRYMDQSGLPPNIVTYNTLVGHHCRKGK 404



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 92/308 (29%), Positives = 150/308 (48%), Gaps = 11/308 (3%)

Query: 207 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 266
           P+  +Y  LV+ LC    ++KA   +  M  +K V      N+ +  LC  +  +  +  
Sbjct: 8   PNALSYCYLVKALCRTGKIDKACSTIAEMAREKLVPDVFTYNVVIDTLCKARRISRAIE- 66

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
                +T  +PDV+T NT++ G CK GR+ +A  +   M  G    P  VT+TT+I    
Sbjct: 67  ---FFETMPEPDVVTYNTLLGGLCKNGRVAQACSLFGSM-EGAGITPSDVTYTTLIDVFC 122

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
            + + + A  LL Q+M  R  SP + +Y +++ GL + R+V++A ++F  M   G   D 
Sbjct: 123 KMCQFETAYGLL-QLMASRKCSPTVYSYCSIINGLCKNRKVDQAYQLFEEMKLAGCKPDR 181

Query: 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE 446
            TY  +I GLC   +L EAK     +V  S   D   + A+I+GLC + +I EA      
Sbjct: 182 VTYNTLIHGLCVKQRLHEAKDLLTVMVENSFQPDKITFTALIEGLCTTDRIKEAFVLFQG 241

Query: 447 LVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW--RILDKLHGNR 504
           +   G  P++V + V++    KL ++R+    L  +R     P+AV     I  +L   R
Sbjct: 242 MAKQGCAPDLVTHTVLVS---KLCIRRKLRPALSVVRNYPACPEAVILYTPIFRELGRRR 298

Query: 505 GNDFGLRI 512
           G D   R+
Sbjct: 299 GFDRAARL 306



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 91/378 (24%), Positives = 167/378 (44%), Gaps = 76/378 (20%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C + +   A+ L   M SR   P V SY ++I+G C+  ++D AY++F+EM+  G 
Sbjct: 118 IDVFCKMCQFETAYGLLQLMASRKCSPTVYSYCSIINGLCKNRKVDQAYQLFEEMKLAGC 177

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TY+ L+ G+   + +  A  L+  + E   + + ++     F  L++ LC    +
Sbjct: 178 KPDRVTYNTLIHGLCVKQRLHEAKDLLTVMVENSFQPDKIT-----FTALIEGLCTTDRI 232

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLC------------------------------ 150
            E F + + M +     +      ++  LC                              
Sbjct: 233 KEAFVLFQGMAKQGCAPDLVTHTVLVSKLCIRRKLRPALSVVRNYPACPEAVILYTPIFR 292

Query: 151 RSGRNHG---ASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLP 207
             GR  G   A+R++  M +RG+ P++V+Y +   GL      MRAY+     ++ G  P
Sbjct: 293 ELGRRRGFDRAARLLQKMARRGVAPNVVTYTAFFKGLGDWKEGMRAYREFRRMLEQGIEP 352

Query: 208 SEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVL 267
               Y VLV+G C  + L+ A K+++                                  
Sbjct: 353 DMVAYNVLVDGFCKANRLDMAEKMVR---------------------------------- 378

Query: 268 VFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA-GKFCAPDAVTFTTIIFGLL 326
            +M Q+   P+++T NT++   C+ G++E   ++L+ MV+ G+   PD  T++T++ GL 
Sbjct: 379 -YMDQSGLPPNIVTYNTLVGHHCRKGKVEAIGELLHTMVSRGR--QPDVATWSTLVAGLF 435

Query: 327 NVGRIQEALNLLYQVMPQ 344
            VG++  A + L   M Q
Sbjct: 436 RVGQVDAAYSFLNLAMSQ 453


>gi|449453087|ref|XP_004144290.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
 gi|449522905|ref|XP_004168466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 915

 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 131/495 (26%), Positives = 235/495 (47%), Gaps = 7/495 (1%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C L  V EA      +   G   +  +YT+LI GYCR   +D A  +F  M + G L N 
Sbjct: 215 CKLGNVVEAELYVSKIVQAGLSLDTFTYTSLILGYCRNKNVDAANAIFLSMPNKGCLRNE 274

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           ++Y+ L+ G    R V+ A     KL+ +M  E++       +  ++ +LC+ G   E  
Sbjct: 275 VSYTNLIHGFCEARRVDEA----LKLFSQM-HEDNCWPTVRTYTVIIFALCQLGRKTEAL 329

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
            + ++M +            +I SLC       A +++  M ++GL PS+V+YN+++ G 
Sbjct: 330 NMFKEMTEKHCQPNVHTYTVLICSLCEDSNFDDAKKILNGMLEKGLIPSVVTYNALIDGY 389

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
           CK G    A ++L         P+  TY  L+ G C   ++ KA  +L  ML +K     
Sbjct: 390 CKKGLSASALEILSLMESNNCSPNARTYNELILGFCRGKNIHKAMSLLHKMLERKLQPNV 449

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
              NI +   C   +      +L  M ++   PD  T +  I+  CK G +EEA + L +
Sbjct: 450 VTYNILIHGQCKEGDLGSAYKLLSLMNESGLVPDEWTYSVFIDTLCKRGLVEEA-RSLFE 508

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
            +  K    + V ++T+I G   VG++ +   LL +++   G  P  +TYN+++ G  + 
Sbjct: 509 SLKEKGIKANEVIYSTLIDGYCKVGKVSDGRFLLDKML-SAGCVPNSITYNSLIDGYCKE 567

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY 424
           +  +EA+ + + M+   +   + TY I+ID L + ++ D+A   +D ++   +  D ++Y
Sbjct: 568 KNFKEARLLVDIMIKRDIEPAADTYTILIDNLLKDDEFDQAHDMFDQMLSTGSHPDVFIY 627

Query: 425 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484
            A I   C  G++ +A   + ++   G+ P+ + Y + ID   +      A+ IL+ M +
Sbjct: 628 TAFIHAYCSHGRLKDAEVLICKMNAKGIMPDTMLYTLFIDAYGRFGSIDGAFGILKRMHE 687

Query: 485 NGLNPDAVTWRILDK 499
            G  P   T+  L K
Sbjct: 688 VGCEPSYYTYSCLIK 702



 Score =  181 bits (460), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 123/466 (26%), Positives = 220/466 (47%), Gaps = 42/466 (9%)

Query: 32  YTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLW 91
           Y  L+    R   +D    V+ EM    V PN  T + +V G  +  +V  A + + K+ 
Sbjct: 172 YNMLLMLLSRFLMIDEMKSVYLEMLDDMVTPNIFTLNTMVNGYCKLGNVVEAELYVSKIV 231

Query: 92  ERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCR 151
           +       LS++   + +L+   CR   V+    I   MP    +  E +  ++I   C 
Sbjct: 232 Q-----AGLSLDTFTYTSLILGYCRNKNVDAANAIFLSMPNKGCLRNEVSYTNLIHGFCE 286

Query: 152 SGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHT 211
           + R   A ++   M +    P++ +Y  I+  LC+ G    A  + +E  +    P+ HT
Sbjct: 287 ARRVDEALKLFSQMHEDNCWPTVRTYTVIIFALCQLGRKTEALNMFKEMTEKHCQPNVHT 346

Query: 212 YKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFML 271
           Y VL+  LC +S+ + A+K+L  ML K  +                              
Sbjct: 347 YTVLICSLCEDSNFDDAKKILNGMLEKGLI------------------------------ 376

Query: 272 QTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRI 331
                P V+T N +I+G+CK G    AL++L+ M +   C+P+A T+  +I G      I
Sbjct: 377 -----PSVVTYNALIDGYCKKGLSASALEILSLMESNN-CSPNARTYNELILGFCRGKNI 430

Query: 332 QEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAI 391
            +A++LL++++ +R   P +VTYN ++ G  +   +  A ++ + M   G+V D  TY++
Sbjct: 431 HKAMSLLHKML-ERKLQPNVVTYNILIHGQCKEGDLGSAYKLLSLMNESGLVPDEWTYSV 489

Query: 392 VIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 451
            ID LC+   ++EA+  ++ +       +  +Y+ +I G C+ GK+ +    L +++ +G
Sbjct: 490 FIDTLCKRGLVEEARSLFESLKEKGIKANEVIYSTLIDGYCKVGKVSDGRFLLDKMLSAG 549

Query: 452 VTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
             PN + YN +IDG CK    +EA  ++  M K  + P A T+ IL
Sbjct: 550 CVPNSITYNSLIDGYCKEKNFKEARLLVDIMIKRDIEPAADTYTIL 595



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 120/498 (24%), Positives = 233/498 (46%), Gaps = 9/498 (1%)

Query: 10  VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSV 69
           + E   ++ +M      PN+ +  T+++GYC+ G +  A     ++   G+  ++ TY+ 
Sbjct: 185 IDEMKSVYLEMLDDMVTPNIFTLNTMVNGYCKLGNVVEAELYVSKIVQAGLSLDTFTYTS 244

Query: 70  LVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAED 129
           L+ G  R ++V+ AN +   +       +    N  ++ NL+   C    V+E  ++   
Sbjct: 245 LILGYCRNKNVDAANAIFLSM-----PNKGCLRNEVSYTNLIHGFCEARRVDEALKLFSQ 299

Query: 130 MPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG 189
           M +            +I +LC+ GR   A  +   M ++   P++ +Y  ++  LC+   
Sbjct: 300 MHEDNCWPTVRTYTVIIFALCQLGRKTEALNMFKEMTEKHCQPNVHTYTVLICSLCEDSN 359

Query: 190 CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNI 249
              A ++L   ++ G +PS  TY  L++G C +     A ++L  M S       R  N 
Sbjct: 360 FDDAKKILNGMLEKGLIPSVVTYNALIDGYCKKGLSASALEILSLMESNNCSPNARTYNE 419

Query: 250 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK 309
            +   C  KN  + +++L  ML+ + QP+V+T N +I+G CK G +  A K+L+ M    
Sbjct: 420 LILGFCRGKNIHKAMSLLHKMLERKLQPNVVTYNILIHGQCKEGDLGSAYKLLSLMNESG 479

Query: 310 FCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEE 369
              PD  T++  I  L   G ++EA + L++ + ++G     V Y+ ++ G  ++ +V +
Sbjct: 480 L-VPDEWTYSVFIDTLCKRGLVEEARS-LFESLKEKGIKANEVIYSTLIDGYCKVGKVSD 537

Query: 370 AKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY-VYAAMI 428
            + + + ML  G V +S TY  +IDG C+     EA R   DI+   +I      Y  +I
Sbjct: 538 GRFLLDKMLSAGCVPNSITYNSLIDGYCKEKNFKEA-RLLVDIMIKRDIEPAADTYTILI 596

Query: 429 KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLN 488
             L +  +  +A     +++ +G  P++  Y   I   C     ++A  ++ +M   G+ 
Sbjct: 597 DNLLKDDEFDQAHDMFDQMLSTGSHPDVFIYTAFIHAYCSHGRLKDAEVLICKMNAKGIM 656

Query: 489 PDAVTWRILDKLHGNRGN 506
           PD + + +    +G  G+
Sbjct: 657 PDTMLYTLFIDAYGRFGS 674



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 136/528 (25%), Positives = 228/528 (43%), Gaps = 60/528 (11%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEM--RHCGVL 61
            C   RV EA KLF  M      P V +YT +I   C+ G    A  +F EM  +HC   
Sbjct: 284 FCEARRVDEALKLFSQMHEDNCWPTVRTYTVIIFALCQLGRKTEALNMFKEMTEKHCQ-- 341

Query: 62  PNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVN 121
           PN  TY+VL+  +    + + A  ++  + E+      L  +   +  L+D  C++G   
Sbjct: 342 PNVHTYTVLICSLCEDSNFDDAKKILNGMLEK-----GLIPSVVTYNALIDGYCKKGLSA 396

Query: 122 EVFRIAEDM------PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLV 175
               I   M      P  ++ NE      +I   CR    H A  +++ M +R L P++V
Sbjct: 397 SALEILSLMESNNCSPNARTYNE------LILGFCRGKNIHKAMSLLHKMLERKLQPNVV 450

Query: 176 SYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM 235
           +YN ++HG CK G    AY+LL    + G +P E TY V ++ LC    +E+AR + + +
Sbjct: 451 TYNILIHGQCKEGDLGSAYKLLSLMNESGLVPDEWTYSVFIDTLCKRGLVEEARSLFESL 510

Query: 236 LSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 295
             K       I +  +   C +   ++   +L  ML   C P+ IT N++I+G+CK    
Sbjct: 511 KEKGIKANEVIYSTLIDGYCKVGKVSDGRFLLDKMLSAGCVPNSITYNSLIDGYCKEKNF 570

Query: 296 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN 355
           +EA ++L D++  +   P A T+T +I  LL      +A ++  Q++   G  P +  Y 
Sbjct: 571 KEA-RLLVDIMIKRDIEPAADTYTILIDNLLKDDEFDQAHDMFDQML-STGSHPDVFIYT 628

Query: 356 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA----KRFWDD 411
           A +       R+++A+ +   M   G++ D+  Y + ID       +D A    KR  + 
Sbjct: 629 AFIHAYCSHGRLKDAEVLICKMNAKGIMPDTMLYTLFIDAYGRFGSIDGAFGILKRMHEV 688

Query: 412 IVWPSNIHDNYVYAAMIKGLC-----------------------------RSGKIHEAVH 442
              PS     Y Y+ +IK L                              R       + 
Sbjct: 689 GCEPS----YYTYSCLIKHLSNAKPKEVSSSSELSDLSSGVASNDFSNCWRRVDYEFTLD 744

Query: 443 FLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD 490
              ++ + G  PN   Y   I G CK+     A+++   M++ G +P+
Sbjct: 745 LFGKMAEHGCAPNANTYGKFITGLCKVGCLEVAHRLFDHMKEKGQSPN 792



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 126/524 (24%), Positives = 233/524 (44%), Gaps = 36/524 (6%)

Query: 3   QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
            LC  S   +A K+   M  +G +P+VV+Y  LI GYC+ G    A ++   M      P
Sbjct: 353 SLCEDSNFDDAKKILNGMLEKGLIPSVVTYNALIDGYCKKGLSASALEILSLMESNNCSP 412

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           N+ TY+ L+ G  R +++ +A  L+ K+ ER      L  N   +  L+   C+EG +  
Sbjct: 413 NARTYNELILGFCRGKNIHKAMSLLHKMLER-----KLQPNVVTYNILIHGQCKEGDLGS 467

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
            +++   M +   V +E+     ID+LC+ G    A  +   ++++G+  + V Y++++ 
Sbjct: 468 AYKLLSLMNESGLVPDEWTYSVFIDTLCKRGLVEEARSLFESLKEKGIKANEVIYSTLID 527

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           G CK G       LL++ +  G +P+  TY  L++G C E + ++AR ++  M+ +    
Sbjct: 528 GYCKVGKVSDGRFLLDKMLSAGCVPNSITYNSLIDGYCKEKNFKEARLLVDIMIKRDIEP 587

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
                 I +  L       +  ++   ML T   PDV      I+ +C  GR+++A  ++
Sbjct: 588 AADTYTILIDNLLKDDEFDQAHDMFDQMLSTGSHPDVFIYTAFIHAYCSHGRLKDAEVLI 647

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
             M A K   PD + +T  I      G I  A  +L + M + G  P   TY+ +++ L 
Sbjct: 648 CKMNA-KGIMPDTMLYTLFIDAYGRFGSIDGAFGILKR-MHEVGCEPSYYTYSCLIKHLS 705

Query: 363 R---------------------------LRRV--EEAKEVFNCMLGIGVVADSTTYAIVI 393
                                        RRV  E   ++F  M   G   ++ TY   I
Sbjct: 706 NAKPKEVSSSSELSDLSSGVASNDFSNCWRRVDYEFTLDLFGKMAEHGCAPNANTYGKFI 765

Query: 394 DGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVT 453
            GLC+   L+ A R +D +       +  +Y +++   C+ G   EA+ +L  ++++   
Sbjct: 766 TGLCKVGCLEVAHRLFDHMKEKGQSPNEDIYNSLLGCSCQLGLYGEAIRWLDIMIENRHL 825

Query: 454 PNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           P++    +++ G        +A ++     +   N D + W++L
Sbjct: 826 PHLDSCKLLLCGLYDEGNDEKAKRVFCSFLQCEYNYDEMVWKVL 869



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 98/409 (23%), Positives = 182/409 (44%), Gaps = 13/409 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    V EA  LF  +K +G   N V Y+TLI GYC+ G++     + D+M   G 
Sbjct: 491 IDTLCKRGLVEEARSLFESLKEKGIKANEVIYSTLIDGYCKVGKVSDGRFLLDKMLSAGC 550

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +PNS+TY+ L+ G  + ++ + A +L+  + +R     D+      +  L+D+L ++   
Sbjct: 551 VPNSITYNSLIDGYCKEKNFKEARLLVDIMIKR-----DIEPAADTYTILIDNLLKDDEF 605

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           ++   + + M    S  + F     I + C  GR   A  ++  M  +G+ P  + Y   
Sbjct: 606 DQAHDMFDQMLSTGSHPDVFIYTAFIHAYCSHGRLKDAEVLICKMNAKGIMPDTMLYTLF 665

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +    + G    A+ +L+   + G  PS +TY  L++ L   +  ++     +       
Sbjct: 666 IDAYGRFGSIDGAFGILKRMHEVGCEPSYYTYSCLIKHL-SNAKPKEVSSSSELSDLSSG 724

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           V      N + R      +    L++   M +  C P+  T    I G CK+G +E A +
Sbjct: 725 VASNDFSNCWRRV-----DYEFTLDLFGKMAEHGCAPNANTYGKFITGLCKVGCLEVAHR 779

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           + + M   K  +P+   + +++     +G   EA+  L  +M +  + P + +   +L G
Sbjct: 780 LFDHM-KEKGQSPNEDIYNSLLGCSCQLGLYGEAIRWL-DIMIENRHLPHLDSCKLLLCG 837

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFW 409
           L+     E+AK VF   L      D   + ++IDGL +    D+    +
Sbjct: 838 LYDEGNDEKAKRVFCSFLQCEYNYDEMVWKVLIDGLLKKGLSDKCSDLF 886



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 105/256 (41%), Gaps = 26/256 (10%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C   R+ +A  L   M ++G +P+ + YT  I  Y R G +D A+ +   M   G  P+ 
Sbjct: 635 CSHGRLKDAEVLICKMNAKGIMPDTMLYTLFIDAYGRFGSIDGAFGILKRMHEVGCEPSY 694

Query: 65  LTYSVLVRGVLRTRDVER-------------ANVLMFKLWERMKEEEDLSV--------- 102
            TYS L++ +   +  E              A+      W R+  E  L +         
Sbjct: 695 YTYSCLIKHLSNAKPKEVSSSSELSDLSSGVASNDFSNCWRRVDYEFTLDLFGKMAEHGC 754

Query: 103 --NNAAFANLVDSLCREGYVNEVFRIAEDMPQ-GKSVNEEFACGHMIDSLCRSGRNHGAS 159
             N   +   +  LC+ G +    R+ + M + G+S NE+     ++   C+ G    A 
Sbjct: 755 APNANTYGKFITGLCKVGCLEVAHRLFDHMKEKGQSPNEDIY-NSLLGCSCQLGLYGEAI 813

Query: 160 RVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGL 219
           R + +M +    P L S   ++ GL   G   +A ++    +Q  Y   E  +KVL++GL
Sbjct: 814 RWLDIMIENRHLPHLDSCKLLLCGLYDEGNDEKAKRVFCSFLQCEYNYDEMVWKVLIDGL 873

Query: 220 CGESDLEKARKVLQFM 235
             +   +K   +   M
Sbjct: 874 LKKGLSDKCSDLFGIM 889


>gi|18407744|ref|NP_564809.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169913|sp|Q9CAM8.1|PP100_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63150
 gi|12323259|gb|AAG51611.1|AC010795_15 unknown protein; 70626-72515 [Arabidopsis thaliana]
 gi|15810427|gb|AAL07101.1| unknown protein [Arabidopsis thaliana]
 gi|24030501|gb|AAN41397.1| unknown protein [Arabidopsis thaliana]
 gi|332195941|gb|AEE34062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 129/502 (25%), Positives = 241/502 (48%), Gaps = 11/502 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C  S++  A  +   M   G+ P++V+ ++L++GYC +  +  A  + D+M   G  P+
Sbjct: 128 FCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPD 187

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           + T++ L+ G+        A  L+ ++ +R   + DL      +  +V+ LC+ G ++  
Sbjct: 188 TFTFTTLIHGLFLHNKASEAVALVDQMVQR-GCQPDL----VTYGTVVNGLCKRGDIDLA 242

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             +   M   +          +IDSLC+      A  +   M  +G+ P++V+YNS+++ 
Sbjct: 243 LNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINC 302

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LC +G    A +LL   ++    P+  T+  L++    E  L +A K+ + M+ +     
Sbjct: 303 LCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPD 362

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
           T   N+ +   C+     E   +  FM+   C P++ T NT+INGFCK  R+E+ +++  
Sbjct: 363 TITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFR 422

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           +M + +    + VT+TTII G    G    A  +  Q++  R     I+TY+ +L GL  
Sbjct: 423 EM-SQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNR-VPTDIMTYSILLHGLCS 480

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
             +++ A  +F  +    +  +   Y  +I+G+C++ ++ EA   WD     S   D   
Sbjct: 481 YGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMCKAGKVGEA---WDLFCSLSIKPDVVT 537

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y  MI GLC    + EA     ++ + G  PN   YN +I    +   +  + ++++EMR
Sbjct: 538 YNTMISGLCSKRLLQEADDLFRKMKEDGTLPNSGTYNTLIRANLRDCDRAASAELIKEMR 597

Query: 484 KNGLNPDAVTWRIL-DKLHGNR 504
            +G   DA T  ++ + LH  R
Sbjct: 598 SSGFVGDASTISLVTNMLHDGR 619



 Score =  187 bits (476), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 136/531 (25%), Positives = 240/531 (45%), Gaps = 45/531 (8%)

Query: 2   DQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVL 61
           ++L  + +V +A  LF DM      P++V +  L+    +  + ++   + ++M+  G+ 
Sbjct: 56  NRLSDIIKVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGIS 115

Query: 62  PNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVN 121
            +  TYS+ +    R   +  A  ++ K+  ++  E D+       ++L++  C    ++
Sbjct: 116 HDLYTYSIFINCFCRRSQLSLALAVLAKMM-KLGYEPDI----VTLSSLLNGYCHSKRIS 170

Query: 122 EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
           +   + + M +     + F    +I  L    +   A  +V  M +RG  P LV+Y ++V
Sbjct: 171 DAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVV 230

Query: 182 HGLCKHGGCMRAYQLLE-----------------------------------EGIQFGYL 206
           +GLCK G    A  LL                                    E    G  
Sbjct: 231 NGLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIR 290

Query: 207 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 266
           P+  TY  L+  LC       A ++L  ML KK        N  + A        E   +
Sbjct: 291 PNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKL 350

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
              M+Q    PD IT N +INGFC   R++EA ++   MV+ K C P+  T+ T+I G  
Sbjct: 351 HEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVS-KDCLPNIQTYNTLINGFC 409

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
              R+++ +  L++ M QRG     VTY  +++G F+    + A+ VF  M+   V  D 
Sbjct: 410 KCKRVEDGVE-LFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDI 468

Query: 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE 446
            TY+I++ GLC   +LD A   +  +       + ++Y  MI+G+C++GK+ EA      
Sbjct: 469 MTYSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMCKAGKVGEAWDLFCS 528

Query: 447 LVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           L    + P++V YN +I G C   + +EA  + R+M+++G  P++ T+  L
Sbjct: 529 L---SIKPDVVTYNTMISGLCSKRLLQEADDLFRKMKEDGTLPNSGTYNTL 576



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 101/396 (25%), Positives = 189/396 (47%), Gaps = 4/396 (1%)

Query: 107 FANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMR 166
           F  L+ ++ +      V  + E M      ++ +     I+  CR  +   A  V+  M 
Sbjct: 86  FNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMM 145

Query: 167 KRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLE 226
           K G  P +V+ +S+++G C       A  L+++ ++ GY P   T+  L+ GL   +   
Sbjct: 146 KLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKAS 205

Query: 227 KARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVI 286
           +A  ++  M+ +            +  LC   +    LN+L  M   + + +V+  NT+I
Sbjct: 206 EAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTII 265

Query: 287 NGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
           +  CK   +E A+ +  +M   K   P+ VT+ ++I  L N GR  +A  LL   M ++ 
Sbjct: 266 DSLCKYRHVEVAVDLFTEM-ETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSN-MLEKK 323

Query: 347 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
            +P +VT+NA++   F+  ++ EA+++   M+   +  D+ TY ++I+G C  N+LDEAK
Sbjct: 324 INPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAK 383

Query: 407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466
           + +  +V    + +   Y  +I G C+  ++ + V    E+   G+  N V Y  +I G 
Sbjct: 384 QMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGF 443

Query: 467 CKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
            +      A  + ++M  N +  D +T+ IL  LHG
Sbjct: 444 FQAGDCDSAQMVFKQMVSNRVPTDIMTYSIL--LHG 477



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 103/402 (25%), Positives = 188/402 (46%), Gaps = 11/402 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC    +  A  L   M++     NVV + T+I   C+   ++VA  +F EM   G+ PN
Sbjct: 233 LCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPN 292

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY+ L+  +        A+ L+  + E+      ++ N   F  L+D+  +EG + E 
Sbjct: 293 VVTYNSLINCLCNYGRWSDASRLLSNMLEK-----KINPNVVTFNALIDAFFKEGKLVEA 347

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            ++ E+M Q     +      +I+  C   R   A ++   M  +   P++ +YN++++G
Sbjct: 348 EKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLING 407

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK        +L  E  Q G + +  TY  +++G     D + A+ V + M+S +    
Sbjct: 408 FCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTD 467

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               +I L  LC        L +  ++ +++ + ++   NT+I G CK G++ EA     
Sbjct: 468 IMTYSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMCKAGKVGEAW---- 523

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           D+       PD VT+ T+I GL +   +QEA + L++ M + G  P   TYN ++R   R
Sbjct: 524 DLFCSLSIKPDVVTYNTMISGLCSKRLLQEA-DDLFRKMKEDGTLPNSGTYNTLIRANLR 582

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA 405
                 + E+   M   G V D++T ++V + L    +LD++
Sbjct: 583 DCDRAASAELIKEMRSSGFVGDASTISLVTNML-HDGRLDKS 623



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 97/208 (46%), Gaps = 3/208 (1%)

Query: 294 RIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVT 353
           ++++A+ +  DMV  +   P  V F  ++  +  + + +  ++L  Q M   G S  + T
Sbjct: 63  KVDDAVDLFGDMVKSR-PFPSIVEFNKLLSAVAKMNKFELVISLGEQ-MQTLGISHDLYT 120

Query: 354 YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413
           Y+  +    R  ++  A  V   M+ +G   D  T + +++G C S ++ +A    D +V
Sbjct: 121 YSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMV 180

Query: 414 WPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKR 473
                 D + +  +I GL    K  EAV  + ++V  G  P++V Y  V++G CK     
Sbjct: 181 EMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDID 240

Query: 474 EAYQILREMRKNGLNPDAVTWR-ILDKL 500
            A  +L +M    +  + V +  I+D L
Sbjct: 241 LALNLLNKMEAARIKANVVIFNTIIDSL 268


>gi|115438490|ref|NP_001043552.1| Os01g0611900 [Oryza sativa Japonica Group]
 gi|21104680|dbj|BAB93270.1| fertility restorer homologue-like [Oryza sativa Japonica Group]
 gi|113533083|dbj|BAF05466.1| Os01g0611900 [Oryza sativa Japonica Group]
 gi|125571150|gb|EAZ12665.1| hypothetical protein OsJ_02580 [Oryza sativa Japonica Group]
 gi|215767882|dbj|BAH00111.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 800

 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 146/527 (27%), Positives = 248/527 (47%), Gaps = 33/527 (6%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D L    R+ EA  +  ++ + G   +VV  TTL+HGYC   E+  A  +F+E    G+
Sbjct: 254 VDVLVKGGRMEEALHIKDELLATGKKMSVVLATTLMHGYCLQREVRKALDIFEETLRDGL 313

Query: 61  LPNSLTYSVLVRGVLRTRDVERA------------------------NVLMFKLWER--- 93
           +P  +TY+VL+RG       E+A                         +L  KLW+    
Sbjct: 314 VPTDVTYTVLIRGCTEEGMPEKAYELCRQMRDHGLLPSTNEFNMVIKGLLNDKLWKDAVS 373

Query: 94  -MKEEEDLSVNNAAFAN-LVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGH-MIDSLC 150
             KE  D  + +A   N L+  LC+   + E   + E M +   V       H ++   C
Sbjct: 374 LFKEMADSGIPDAFTYNILIHWLCQRRKIREALNLWEKMNE-TGVKPYIVTYHSLLLCYC 432

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
            +G    A ++   M  +G TP++V+Y +++ G        +AY LL E  Q G   +++
Sbjct: 433 VNGCMDEAVKLYTEMPGKGFTPNVVTYTTLMKGHINKAAFDKAYALLAEMKQNGVSCNDY 492

Query: 211 TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM 270
           TY  L+ GLC    + +  ++L+   ++  V      N  +              V   M
Sbjct: 493 TYNTLINGLCVVGRVCEVGEMLKRFETEGFVPTAMTYNSIINGFIKAGMMGSAFAVYQQM 552

Query: 271 LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR 330
                 P+++T  + I+G+CK    + ALK+LND V  K   PD   + ++IFG    G 
Sbjct: 553 CAKGIPPNIVTYTSFIDGYCKTSCCDLALKMLND-VRCKGLRPDIAAYNSLIFGFCQEGN 611

Query: 331 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYA 390
           +  AL +L  +M + G  P I  YN+ + G   L+ +EEA  ++  M+  G+  D+ TY 
Sbjct: 612 MSHALQVLV-LMLKDGLLPNISVYNSFITGYKNLKMMEEALRLYEKMIKEGIDLDTATYT 670

Query: 391 IVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 450
            +IDG  +   +  A + + ++V   NI D+  + A+  GLCR+G I +A   L E+   
Sbjct: 671 TLIDGFSKDGNVTFALKLYSEMVAKGNIPDHITFTALTHGLCRNGDIDDARKLLDEMNRL 730

Query: 451 GVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            + PN++ YN++I+G  +    +EA+++  EM +  + PD  T+ IL
Sbjct: 731 DIRPNVLMYNMLINGYLRNGKLQEAFRLHDEMLERKIMPDDTTYDIL 777



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 128/530 (24%), Positives = 240/530 (45%), Gaps = 44/530 (8%)

Query: 19  DMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTR 78
           +M+ +G   +   +  ++    + G  D A ++FDEM    + P+    SV +  + + R
Sbjct: 167 EMRGKGRPLDAWMFDVVMRACFKEGMYDDAVRLFDEMPASEIEPDQRVCSVAIASLCKLR 226

Query: 79  DVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDM-PQGKSVN 137
           D  RA +++ K+ +      D + N+     +VD L + G + E   I +++   GK ++
Sbjct: 227 DANRALLVLRKMQDAGFVPWDFTFNS-----VVDVLVKGGRMEEALHIKDELLATGKKMS 281

Query: 138 EEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLL 197
              A   ++   C       A  +     + GL P+ V+Y  ++ G  + G   +AY+L 
Sbjct: 282 VVLAT-TLMHGYCLQREVRKALDIFEETLRDGLVPTDVTYTVLIRGCTEEGMPEKAYELC 340

Query: 198 EEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLI 257
            +    G LPS + + ++++GL  +   + A  + + M +   +      NI +  LC  
Sbjct: 341 RQMRDHGLLPSTNEFNMVIKGLLNDKLWKDAVSLFKEM-ADSGIPDAFTYNILIHWLCQR 399

Query: 258 KNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVT 317
           +   E LN+   M +T  +P ++T ++++  +C  G ++EA+K+  +M  GK   P+ VT
Sbjct: 400 RKIREALNLWEKMNETGVKPYIVTYHSLLLCYCVNGCMDEAVKLYTEM-PGKGFTPNVVT 458

Query: 318 FTTIIFGLLNVGRIQEALNLLYQV------------------------------MPQR-- 345
           +TT++ G +N     +A  LL ++                              M +R  
Sbjct: 459 YTTLMKGHINKAAFDKAYALLAEMKQNGVSCNDYTYNTLINGLCVVGRVCEVGEMLKRFE 518

Query: 346 --GYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLD 403
             G+ P  +TYN+++ G  +   +  A  V+  M   G+  +  TY   IDG C+++  D
Sbjct: 519 TEGFVPTAMTYNSIINGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYTSFIDGYCKTSCCD 578

Query: 404 EAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463
            A +  +D+       D   Y ++I G C+ G +  A+  L  ++  G+ PNI  YN  I
Sbjct: 579 LALKMLNDVRCKGLRPDIAAYNSLIFGFCQEGNMSHALQVLVLMLKDGLLPNISVYNSFI 638

Query: 464 DGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN-DFGLRI 512
            G   L M  EA ++  +M K G++ D  T+  L       GN  F L++
Sbjct: 639 TGYKNLKMMEEALRLYEKMIKEGIDLDTATYTTLIDGFSKDGNVTFALKL 688



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 109/425 (25%), Positives = 192/425 (45%), Gaps = 42/425 (9%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   ++ EA  L+  M   G  P +V+Y +L+  YC  G MD A K++ EM   G  PN
Sbjct: 396 LCQRRKIREALNLWEKMNETGVKPYIVTYHSLLLCYCVNGCMDEAVKLYTEMPGKGFTPN 455

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY+ L++G +     ++A  L+ ++     ++  +S N+  +  L++ LC  G V EV
Sbjct: 456 VVTYTTLMKGHINKAAFDKAYALLAEM-----KQNGVSCNDYTYNTLINGLCVVGRVCEV 510

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             + +       V        +I+   ++G    A  V   M  +G+ P++V+Y S + G
Sbjct: 511 GEMLKRFETEGFVPTAMTYNSIINGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYTSFIDG 570

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK   C  A ++L +    G  P    Y  L+ G C E ++  A               
Sbjct: 571 YCKTSCCDLALKMLNDVRCKGLRPDIAAYNSLIFGFCQEGNMSHA--------------- 615

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                               L VLV ML+    P++   N+ I G+  +  +EEAL++  
Sbjct: 616 --------------------LQVLVLMLKDGLLPNISVYNSFITGYKNLKMMEEALRLYE 655

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            M+       D  T+TT+I G    G +  AL L Y  M  +G  P  +T+ A+  GL R
Sbjct: 656 KMIKEGIDL-DTATYTTLIDGFSKDGNVTFALKL-YSEMVAKGNIPDHITFTALTHGLCR 713

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
              +++A+++ + M  + +  +   Y ++I+G   + +L EA R  D+++    + D+  
Sbjct: 714 NGDIDDARKLLDEMNRLDIRPNVLMYNMLINGYLRNGKLQEAFRLHDEMLERKIMPDDTT 773

Query: 424 YAAMI 428
           Y  ++
Sbjct: 774 YDILV 778



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 112/216 (51%), Gaps = 5/216 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C  S    A K+  D++ +G  P++ +Y +LI G+C+ G M  A +V   M   G+
Sbjct: 568 IDGYCKTSCCDLALKMLNDVRCKGLRPDIAAYNSLIFGFCQEGNMSHALQVLVLMLKDGL 627

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           LPN   Y+  + G    + +E A     +L+E+M +E  + ++ A +  L+D   ++G V
Sbjct: 628 LPNISVYNSFITGYKNLKMMEEA----LRLYEKMIKE-GIDLDTATYTTLIDGFSKDGNV 682

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
               ++  +M    ++ +      +   LCR+G    A +++  M +  + P+++ YN +
Sbjct: 683 TFALKLYSEMVAKGNIPDHITFTALTHGLCRNGDIDDARKLLDEMNRLDIRPNVLMYNML 742

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLV 216
           ++G  ++G    A++L +E ++   +P + TY +LV
Sbjct: 743 INGYLRNGKLQEAFRLHDEMLERKIMPDDTTYDILV 778



 Score = 43.9 bits (102), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 41/195 (21%), Positives = 75/195 (38%), Gaps = 43/195 (22%)

Query: 342 MPQRGYSPGIVT-----------------------------------YNAVLRGLFRLRR 366
           M  RG +P   +                                   ++ V+R  F+   
Sbjct: 133 MEARGVTPDAKSRTDLLAVTARSASAADALALLAEMRGKGRPLDAWMFDVVMRACFKEGM 192

Query: 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA----KRFWDDIVWPSNIHDNY 422
            ++A  +F+ M    +  D    ++ I  LC+    + A    ++  D    P +   N 
Sbjct: 193 YDDAVRLFDEMPASEIEPDQRVCSVAIASLCKLRDANRALLVLRKMQDAGFVPWDFTFNS 252

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
           V   ++KG    G++ EA+H   EL+ +G   ++V    ++ G C     R+A  I  E 
Sbjct: 253 VVDVLVKG----GRMEEALHIKDELLATGKKMSVVLATTLMHGYCLQREVRKALDIFEET 308

Query: 483 RKNGLNPDAVTWRIL 497
            ++GL P  VT+ +L
Sbjct: 309 LRDGLVPTDVTYTVL 323


>gi|297832318|ref|XP_002884041.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297329881|gb|EFH60300.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 874

 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 129/498 (25%), Positives = 238/498 (47%), Gaps = 34/498 (6%)

Query: 27  PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVL 86
           P +  Y  L+    R   ++    ++ +M  CG+ P + T+++L+R +  +  V+ A   
Sbjct: 110 PGIYLYNVLLESCIRERRVEFVSWLYKDMVLCGISPETYTFNLLIRALCDSSCVDAAR-- 167

Query: 87  MFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMI 146
             +L++ M E+     N   F  LV   C+ G  ++   +   M     +  +     ++
Sbjct: 168 --ELFDEMPEK-GCKPNEFTFGILVRGYCKAGLTDKGLELLNSMESFGVLPNKVVYNTIV 224

Query: 147 DSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL 206
            S CR GRN  + ++V  MR+ GL P +V++NS +  LCK G  + A ++  +     YL
Sbjct: 225 SSFCREGRNDDSEKLVEKMREEGLVPDIVTFNSRISALCKEGKVLDASRIFSDMELDEYL 284

Query: 207 ----PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTE 262
               P+  TY ++++G C    LE A+ + + +    D+   +  NI+L+ L       E
Sbjct: 285 GLPRPNSITYNLMLKGFCKVGLLEDAKTLFESIRENDDLVSLQSYNIWLQGLVRHGKFIE 344

Query: 263 LLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTII 322
              VL  M+     P + + N +++G CK+G + +A K +  ++     +PDAVT+  ++
Sbjct: 345 AETVLKQMIDKGIGPSIYSYNILMDGLCKLGMLSDA-KTIVGLMKRNGVSPDAVTYGCLL 403

Query: 323 FGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGV 382
            G  +VG++  A +LL ++M +    P   T N +L  L+ + R+ EA+E+   M   G 
Sbjct: 404 HGYCSVGKVDAAKSLLQEMM-RNNCLPNAYTCNILLHSLWNMGRISEAEELLRKMNEKGY 462

Query: 383 VADSTTYAIVIDGLCESNQLDEAKR----------------------FWDDIVWPSN-IH 419
             D+ T  I++DGLC S +LD+A                          DD +  +N + 
Sbjct: 463 GLDTVTCNIIVDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVDDSLIENNCLP 522

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           D   Y+ ++ GLC++G+  EA     E++   + P+ + YN+ I   CK      A+++L
Sbjct: 523 DLITYSTLLNGLCKAGRFAEAKTLFAEMMGEKLQPDSLAYNIFIHHFCKQGKISSAFRVL 582

Query: 480 REMRKNGLNPDAVTWRIL 497
           ++M K G +    T+  L
Sbjct: 583 KDMEKKGCHKSLETYNSL 600



 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 144/524 (27%), Positives = 234/524 (44%), Gaps = 40/524 (7%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC  S V  A +LF +M  +G  PN  ++  L+ GYC+ G  D   ++ + M   GVLPN
Sbjct: 157 LCDSSCVDAARELFDEMPEKGCKPNEFTFGILVRGYCKAGLTDKGLELLNSMESFGVLPN 216

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            + Y+ +V    R    E  N    KL E+M+EE  L  +   F + + +LC+EG V + 
Sbjct: 217 KVVYNTIVSSFCR----EGRNDDSEKLVEKMREE-GLVPDIVTFNSRISALCKEGKVLDA 271

Query: 124 FRIAEDM--------PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLV 175
            RI  DM        P+  S+        M+   C+ G    A  +   +R+     SL 
Sbjct: 272 SRIFSDMELDEYLGLPRPNSITYNL----MLKGFCKVGLLEDAKTLFESIRENDDLVSLQ 327

Query: 176 SYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM 235
           SYN  + GL +HG  + A  +L++ I  G  PS ++Y +L++GLC    L  A+ ++  M
Sbjct: 328 SYNIWLQGLVRHGKFIEAETVLKQMIDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLM 387

Query: 236 LSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 295
                          L   C +       ++L  M++  C P+  T N +++    MGRI
Sbjct: 388 KRNGVSPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWNMGRI 447

Query: 296 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLL-------YQVMPQRGYS 348
            EA ++L  M    +   D VT   I+ GL   G + +A+ ++          +   G S
Sbjct: 448 SEAEELLRKMNEKGY-GLDTVTCNIIVDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNS 506

Query: 349 ---------------PGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVI 393
                          P ++TY+ +L GL +  R  EAK +F  M+G  +  DS  Y I I
Sbjct: 507 YIGLVDDSLIENNCLPDLITYSTLLNGLCKAGRFAEAKTLFAEMMGEKLQPDSLAYNIFI 566

Query: 394 DGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVT 453
              C+  ++  A R   D+           Y ++I GL    +I E    + E+ + G++
Sbjct: 567 HHFCKQGKISSAFRVLKDMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMREKGIS 626

Query: 454 PNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           PNI  YN  I   C+     +A  +L EM +  + P+  +++ L
Sbjct: 627 PNICTYNTAIQYLCEGGKVEDATNLLDEMMQKNIAPNVFSFKYL 670



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 145/518 (27%), Positives = 242/518 (46%), Gaps = 44/518 (8%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           RV     L+ DM   G  P   ++  LI   C +  +D A ++FDEM   G  PN  T+ 
Sbjct: 127 RVEFVSWLYKDMVLCGISPETYTFNLLIRALCDSSCVDAARELFDEMPEKGCKPNEFTFG 186

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSV--NNAAFANLVDSLCREGYVNEVFRI 126
           +LVRG  +         L  K  E +   E   V  N   +  +V S CREG  ++  ++
Sbjct: 187 ILVRGYCKAG-------LTDKGLELLNSMESFGVLPNKVVYNTIVSSFCREGRNDDSEKL 239

Query: 127 AEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKR---GLT-PSLVSYNSIVH 182
            E M +   V +       I +LC+ G+   ASR+   M      GL  P+ ++YN ++ 
Sbjct: 240 VEKMREEGLVPDIVTFNSRISALCKEGKVLDASRIFSDMELDEYLGLPRPNSITYNLMLK 299

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           G CK G    A  L E   +   L S  +Y + ++GL       +A  VL+ M+ K    
Sbjct: 300 GFCKVGLLEDAKTLFESIRENDDLVSLQSYNIWLQGLVRHGKFIEAETVLKQMIDKGIGP 359

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
                NI +  LC +   ++   ++  M +    PD +T   +++G+C +G+++ A  +L
Sbjct: 360 SIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVSPDAVTYGCLLHGYCSVGKVDAAKSLL 419

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
            +M+    C P+A T   ++  L N+GRI EA  LL + M ++GY    VT N ++ GL 
Sbjct: 420 QEMMRNN-CLPNAYTCNILLHSLWNMGRISEAEELLRK-MNEKGYGLDTVTCNIIVDGLC 477

Query: 363 RLRRVEEAKEVFNCM----------LG---IGVVADS----------TTYAIVIDGLCES 399
               +++A E+   M          LG   IG+V DS           TY+ +++GLC++
Sbjct: 478 GSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVDDSLIENNCLPDLITYSTLLNGLCKA 537

Query: 400 NQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCY 459
            +  EAK  + +++      D+  Y   I   C+ GKI  A   L ++   G   ++  Y
Sbjct: 538 GRFAEAKTLFAEMMGEKLQPDSLAYNIFIHHFCKQGKISSAFRVLKDMEKKGCHKSLETY 597

Query: 460 NVVIDGACKLSMKREAYQI---LREMRKNGLNPDAVTW 494
           N +I G   L +K + ++I   + EMR+ G++P+  T+
Sbjct: 598 NSLILG---LGIKNQIFEIHGLMDEMREKGISPNICTY 632



 Score =  161 bits (408), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 139/569 (24%), Positives = 245/569 (43%), Gaps = 72/569 (12%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +   C   R  ++ KL   M+  G VP++V++ + I   C+ G++  A ++F +M     
Sbjct: 224 VSSFCREGRNDDSEKLVEKMREEGLVPDIVTFNSRISALCKEGKVLDASRIFSDMELDEY 283

Query: 61  L----PNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCR 116
           L    PNS+TY+++++G  +   +E A  L    +E ++E +DL V+  ++   +  L R
Sbjct: 284 LGLPRPNSITYNLMLKGFCKVGLLEDAKTL----FESIRENDDL-VSLQSYNIWLQGLVR 338

Query: 117 EGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVS 176
            G   E   + + M         ++   ++D LC+ G    A  +V +M++ G++P  V+
Sbjct: 339 HGKFIEAETVLKQMIDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVSPDAVT 398

Query: 177 YNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVL--------------------- 215
           Y  ++HG C  G    A  LL+E ++   LP+ +T  +L                     
Sbjct: 399 YGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWNMGRISEAEELLRKMN 458

Query: 216 --------------VEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIY----------- 250
                         V+GLCG  +L+KA ++++ M          + N Y           
Sbjct: 459 EKGYGLDTVTCNIIVDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVDDSLIEN 518

Query: 251 ------------LRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
                       L  LC      E   +   M+  + QPD +  N  I+ FCK G+I  A
Sbjct: 519 NCLPDLITYSTLLNGLCKAGRFAEAKTLFAEMMGEKLQPDSLAYNIFIHHFCKQGKISSA 578

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
            +VL DM   K C     T+ ++I GL    +I E   L+ + M ++G SP I TYN  +
Sbjct: 579 FRVLKDM-EKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDE-MREKGISPNICTYNTAI 636

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
           + L    +VE+A  + + M+   +  +  ++  +I   C+    D A+  ++  V     
Sbjct: 637 QYLCEGGKVEDATNLLDEMMQKNIAPNVFSFKYLIGAFCKVPDFDMAQEVFETAVSICGQ 696

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI 478
            +  +Y+ M   L  +G++ +A   L  ++D G       Y  ++   CK      A  I
Sbjct: 697 KEG-LYSLMFNELLAAGQLLKATELLEAVLDRGFELGTFLYKDLVVSLCKKDELEVASGI 755

Query: 479 LREMRKNGLNPD-AVTWRILDKLHGNRGN 506
           L +M   G   D A    ++D L G  GN
Sbjct: 756 LHKMIDKGYGFDPAALMPVIDGL-GKMGN 783



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 91/301 (30%), Positives = 156/301 (51%), Gaps = 10/301 (3%)

Query: 207 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 266
           P  + Y VL+E    E  +E    + + M+       T   N+ +RALC          +
Sbjct: 110 PGIYLYNVLLESCIRERRVEFVSWLYKDMVLCGISPETYTFNLLIRALCDSSCVDAAREL 169

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
              M +  C+P+  T   ++ G+CK G  ++ L++LN M +     P+ V + TI+    
Sbjct: 170 FDEMPEKGCKPNEFTFGILVRGYCKAGLTDKGLELLNSMESFGVL-PNKVVYNTIVSSFC 228

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCM-----LGIG 381
             GR  ++  L+ + M + G  P IVT+N+ +  L +  +V +A  +F+ M     LG+ 
Sbjct: 229 REGRNDDSEKLV-EKMREEGLVPDIVTFNSRISALCKEGKVLDASRIFSDMELDEYLGL- 286

Query: 382 VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAV 441
              +S TY +++ G C+   L++AK  ++ I    ++     Y   ++GL R GK  EA 
Sbjct: 287 PRPNSITYNLMLKGFCKVGLLEDAKTLFESIRENDDLVSLQSYNIWLQGLVRHGKFIEAE 346

Query: 442 HFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLH 501
             L +++D G+ P+I  YN+++DG CKL M  +A  I+  M++NG++PDAVT+  L  LH
Sbjct: 347 TVLKQMIDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVSPDAVTYGCL--LH 404

Query: 502 G 502
           G
Sbjct: 405 G 405



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 106/436 (24%), Positives = 188/436 (43%), Gaps = 31/436 (7%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           MD LC L  + +A  +   MK  G  P+ V+Y  L+HGYC  G++D A  +  EM     
Sbjct: 368 MDGLCKLGMLSDAKTIVGLMKRNGVSPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNC 427

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           LPN+ T ++L+  +     +  A  L+ K+ E+    + ++ N      +VD LC  G +
Sbjct: 428 LPNAYTCNILLHSLWNMGRISEAEELLRKMNEKGYGLDTVTCN-----IIVDGLCGSGEL 482

Query: 121 NEVFRIAEDMP-----------------------QGKSVNEEFACGHMIDSLCRSGRNHG 157
           ++   I + M                        +   + +      +++ LC++GR   
Sbjct: 483 DKAIEIVKGMRVHGSAALGNLGNSYIGLVDDSLIENNCLPDLITYSTLLNGLCKAGRFAE 542

Query: 158 ASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVE 217
           A  +   M    L P  ++YN  +H  CK G    A+++L++  + G   S  TY  L+ 
Sbjct: 543 AKTLFAEMMGEKLQPDSLAYNIFIHHFCKQGKISSAFRVLKDMEKKGCHKSLETYNSLIL 602

Query: 218 GLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQP 277
           GL  ++ + +   ++  M  K         N  ++ LC      +  N+L  M+Q    P
Sbjct: 603 GLGIKNQIFEIHGLMDEMREKGISPNICTYNTAIQYLCEGGKVEDATNLLDEMMQKNIAP 662

Query: 278 DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNL 337
           +V +   +I  FCK+   + A +V    V+   C      ++ +   LL  G++ +A  L
Sbjct: 663 NVFSFKYLIGAFCKVPDFDMAQEVFETAVS--ICGQKEGLYSLMFNELLAAGQLLKATEL 720

Query: 338 LYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLC 397
           L  V+  RG+  G   Y  ++  L +   +E A  + + M+  G   D      VIDGL 
Sbjct: 721 LEAVL-DRGFELGTFLYKDLVVSLCKKDELEVASGILHKMIDKGYGFDPAALMPVIDGLG 779

Query: 398 ESNQLDEAKRFWDDIV 413
           +     EA  F + ++
Sbjct: 780 KMGNKKEANNFAEKMM 795



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 93/183 (50%), Gaps = 8/183 (4%)

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGY--------SPGIVTYNAVLRGLFRLRRVEEAK 371
           T +  LL+V  I    N + +  PQ  +         PGI  YN +L    R RRVE   
Sbjct: 73  TKLSSLLSVVSIFAKSNHIDKAFPQFQFVRSRFPENKPGIYLYNVLLESCIRERRVEFVS 132

Query: 372 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 431
            ++  M+  G+  ++ T+ ++I  LC+S+ +D A+  +D++       + + +  +++G 
Sbjct: 133 WLYKDMVLCGISPETYTFNLLIRALCDSSCVDAARELFDEMPEKGCKPNEFTFGILVRGY 192

Query: 432 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 491
           C++G   + +  L  +   GV PN V YN ++   C+     ++ +++ +MR+ GL PD 
Sbjct: 193 CKAGLTDKGLELLNSMESFGVLPNKVVYNTIVSSFCREGRNDDSEKLVEKMREEGLVPDI 252

Query: 492 VTW 494
           VT+
Sbjct: 253 VTF 255



 Score = 47.0 bits (110), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 76/157 (48%), Gaps = 6/157 (3%)

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAI-VIDGLCESNQLDEAKRFWDDIV--WPSN 417
           L R +  EE +E+ N +L   +     +  + V+    +SN +D+A   +  +   +P N
Sbjct: 49  LVRAKMHEEIEELHNLILSSSIQKTKLSSLLSVVSIFAKSNHIDKAFPQFQFVRSRFPEN 108

Query: 418 IHDNYVYAAMIKGLCRSGKIHEAVHFLY-ELVDSGVTPNIVCYNVVIDGACKLSMKREAY 476
               Y+Y  +++   R  ++ E V +LY ++V  G++P    +N++I   C  S    A 
Sbjct: 109 KPGIYLYNVLLESCIRERRV-EFVSWLYKDMVLCGISPETYTFNLLIRALCDSSCVDAAR 167

Query: 477 QILREMRKNGLNPDAVTWRILDKLHGNRG-NDFGLRI 512
           ++  EM + G  P+  T+ IL + +   G  D GL +
Sbjct: 168 ELFDEMPEKGCKPNEFTFGILVRGYCKAGLTDKGLEL 204


>gi|125524465|gb|EAY72579.1| hypothetical protein OsI_00445 [Oryza sativa Indica Group]
          Length = 1014

 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 130/513 (25%), Positives = 245/513 (47%), Gaps = 11/513 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D+LC   R  +A +LF +M  RG  PN V+Y  LIH  C+ G ++ A  +FD+MR  G+
Sbjct: 345 IDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGI 404

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
                 Y+ L+ G  +   ++RA  L+  +      +E L+   A+++ L+  LCR G +
Sbjct: 405 KVTVYPYNSLINGYCKQGSLDRARGLLSGM-----VKEGLTPTAASYSPLIAGLCRNGDL 459

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +    +  +M +       +    +I+  C+  +   A+R+   M    + P+ V++N +
Sbjct: 460 SSAMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVM 519

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G C  G   +A+QL ++ ++ G  P  +TY+ L+ GLC  S + KA + +  + +   
Sbjct: 520 IEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSYA 579

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           V         L  L      TE  ++   M     + D+++   ++    K    E++  
Sbjct: 580 VLNNFSLTALLYGLFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCV 639

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +  +M   +   PD + +T +I  L     + +ALN   Q M   GYSP  VT+  ++  
Sbjct: 640 LFREM-KEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQ-MVIDGYSPNTVTHTVLINN 697

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L +   +  A+ +   ML   V+ +  TY   +D       +++AK     ++   ++  
Sbjct: 698 LCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHSAML-QGHLAS 756

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              +  +IKGLC++GKI EA+  + ++ +SG +P+ + Y+ +I   CK+    +A+++  
Sbjct: 757 IVSFNILIKGLCKAGKIQEAIDLMRKITESGFSPDCISYSTIIHELCKMGDINKAFELWN 816

Query: 481 EMRKNGLNPDAVTWRILDK---LHGNRGNDFGL 510
           EM   GL PD V + I  +   +HG      G+
Sbjct: 817 EMLYKGLKPDVVAYNIFIRWCNVHGESDKALGI 849



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 123/482 (25%), Positives = 222/482 (46%), Gaps = 42/482 (8%)

Query: 13  AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVR 72
           A  L   M+S G   + V Y  L++G C+   +  A +V + M + GV  + +TY  LV 
Sbjct: 217 ARGLVVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVY 276

Query: 73  GVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQ 132
           G  R  ++E A  +   +   ++     S  N +F  ++D L ++  V E F +A  +  
Sbjct: 277 GFCRMEELEMALRITHDM---IRLGFVPSEANCSF--MIDELRKKELVEEAFSLACKLGD 331

Query: 133 GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMR 192
              V   FA   +ID LC++ R   A R+   M  RGL P+ V+Y  ++H LCK G    
Sbjct: 332 LGMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIED 391

Query: 193 AYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLR 252
           A  L ++    G   + + Y  L+ G C +  L++AR +L  M                 
Sbjct: 392 ALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGM----------------- 434

Query: 253 ALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCA 312
                             ++    P   + + +I G C+ G +  A+++  +M A +  A
Sbjct: 435 ------------------VKEGLTPTAASYSPLIAGLCRNGDLSSAMELHREM-AERGIA 475

Query: 313 PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKE 372
            +  TFT +I G     ++ EA  L +  M      P  VT+N ++ G   +  + +A +
Sbjct: 476 WNNYTFTALINGFCKDKKMDEAARL-FDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQ 534

Query: 373 VFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLC 432
           +++ M+ +G+  D+ TY  +I GLC ++ + +A  F  D+     + +N+   A++ GL 
Sbjct: 535 LYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLTALLYGLF 594

Query: 433 RSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAV 492
           R G+  E  H   E+   GV  ++V + +++  A K   K ++  + REM++ G+ PD +
Sbjct: 595 REGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVLFREMKEQGVKPDDI 654

Query: 493 TW 494
            +
Sbjct: 655 FY 656



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 107/398 (26%), Positives = 191/398 (47%), Gaps = 2/398 (0%)

Query: 100 LSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGAS 159
           ++VN    + ++ SL +         + + M Q     +E+     I + C S    GA 
Sbjct: 159 ITVNQYTASQILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNLDGAR 218

Query: 160 RVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGL 219
            +V  M   G+  S V YN +++GLCK+     A ++    +  G    E TY+ LV G 
Sbjct: 219 GLVVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGF 278

Query: 220 CGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDV 279
           C   +LE A ++   M+    V     C+  +  L   +   E  ++   +      P+V
Sbjct: 279 CRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNV 338

Query: 280 ITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLY 339
              N +I+  CK  R ++A ++  +M AG+   P+ VT+  +I  L   G I++AL  L+
Sbjct: 339 FAYNALIDKLCKNERFDDADRLFKEM-AGRGLEPNEVTYAILIHALCKRGMIEDAL-CLF 396

Query: 340 QVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCES 399
             M  +G    +  YN+++ G  +   ++ A+ + + M+  G+   + +Y+ +I GLC +
Sbjct: 397 DKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRN 456

Query: 400 NQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCY 459
             L  A     ++       +NY + A+I G C+  K+ EA     +++DS V PN V +
Sbjct: 457 GDLSSAMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTF 516

Query: 460 NVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           NV+I+G C +   R+A+Q+  +M + GL PD  T+R L
Sbjct: 517 NVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSL 554



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 90/196 (45%), Gaps = 6/196 (3%)

Query: 24  GHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERA 83
           G+ PN V++T LI+  C++G +  A  +  EM    VLPN  TY+  +       D+E+A
Sbjct: 683 GYSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKA 742

Query: 84  NVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACG 143
                 L   M +    S+   +F  L+  LC+ G + E   +   + +     +  +  
Sbjct: 743 K----DLHSAMLQGHLASI--VSFNILIKGLCKAGKIQEAIDLMRKITESGFSPDCISYS 796

Query: 144 HMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQF 203
            +I  LC+ G  + A  +   M  +GL P +V+YN  +     HG   +A  +    I+ 
Sbjct: 797 TIIHELCKMGDINKAFELWNEMLYKGLKPDVVAYNIFIRWCNVHGESDKALGIYTNMIRS 856

Query: 204 GYLPSEHTYKVLVEGL 219
           G  P+  TY+ L+ G+
Sbjct: 857 GVQPNWDTYRALLSGI 872



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 60/126 (47%), Gaps = 2/126 (1%)

Query: 373 VFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH-DNYVYAAMIKGL 431
           V    L  G+  +  T + ++  L +  Q   A+  +D ++  S +H D YVY A I+  
Sbjct: 150 VLGLSLSSGITVNQYTASQILFSLVKIRQFALARDLFDKML-QSGVHLDEYVYTAGIRAY 208

Query: 432 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 491
           C S  +  A   +  +   GV  + V YNV++ G CK    +EA ++   M   G+  D 
Sbjct: 209 CESRNLDGARGLVVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADE 268

Query: 492 VTWRIL 497
           VT+R L
Sbjct: 269 VTYRTL 274



 Score = 45.4 bits (106), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 38/72 (52%)

Query: 3   QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           +LC +  + +A +L+ +M  +G  P+VV+Y   I      GE D A  ++  M   GV P
Sbjct: 801 ELCKMGDINKAFELWNEMLYKGLKPDVVAYNIFIRWCNVHGESDKALGIYTNMIRSGVQP 860

Query: 63  NSLTYSVLVRGV 74
           N  TY  L+ G+
Sbjct: 861 NWDTYRALLSGI 872


>gi|255563546|ref|XP_002522775.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538013|gb|EEF39626.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1071

 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 132/532 (24%), Positives = 246/532 (46%), Gaps = 41/532 (7%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   ++ +A  L   M+  G+VP+VV+Y T+++ YC+ G    A ++ D+M   G+
Sbjct: 175 INVLCVEGKLKKAGYLLKKMEESGYVPSVVTYNTVLNWYCKKGRYKAALELIDQMGSKGI 234

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             ++ TY++LV  + +     +  +L+ K+ +RM     +S N   + ++++   +EG +
Sbjct: 235 EADACTYNMLVDDLCKNNRSAKGYLLLKKMRKRM-----ISPNEITYNSIINGFVKEGKI 289

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
               RI ++M     +        +ID  C  G    A  ++ +M   G  P+ VSY+++
Sbjct: 290 GAATRIFQEMSMLNLLPNCVTYNALIDGHCHDGNFEQALTILEMMEATGPKPNEVSYSAL 349

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++GLC+H     +  +LE     G +     Y  +++GLC    L ++ K+L  ML    
Sbjct: 350 LNGLCRHAKFELSKSILERMRMNGMIVGCIAYTAMIDGLCRNGLLNESVKLLDKMLKDGV 409

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           V      ++ +   C +     +  ++  M +    P+ I   T+I  +CK G + EA K
Sbjct: 410 VPDVVTFSVLINGFCRVGKIKNVKEIICKMYKAGLAPNSIIYTTLIYNYCKTGDVVEAFK 469

Query: 301 V--------------LNDMVAGKFC--------------------APDAVTFTTIIFGLL 326
           V              + +++    C                     P+++TF  II G  
Sbjct: 470 VYVAMSRIGYDANCFICNVLVSSLCKDGKVGVAEYFFHHMSKIGNVPNSITFDCIINGYG 529

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
           N G   +A + ++  M + G+ P   TY  +L+ L R  + +EAK + + +  I    D+
Sbjct: 530 NSGNGLKAFS-MFDEMIKAGHHPSHFTYGGLLKALCRAGKFKEAKRLLDKLHYIPSAVDT 588

Query: 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE 446
            TY  ++    +S  L +A   +D++V  + + D+Y YA +  GL R GK+  A+HF   
Sbjct: 589 VTYNTILVETFKSGMLTDAVALFDEMVQRNVLPDSYTYAIIFAGLIRRGKMVAALHFYGN 648

Query: 447 LVDSG-VTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           L+  G V+P  V Y   +DG  +    + A     +M KNGL  D +   ++
Sbjct: 649 LLGKGAVSPEKVMYTTFVDGLFRAGQSKAALYFCEDMEKNGLCADLIATNVI 700



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 130/508 (25%), Positives = 243/508 (47%), Gaps = 19/508 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC  +R  + + L   M+ R   PN ++Y ++I+G+ + G++  A ++F EM    +
Sbjct: 245 VDDLCKNNRSAKGYLLLKKMRKRMISPNEITYNSIINGFVKEGKIGAATRIFQEMSMLNL 304

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           LPN +TY+ L+ G     + E+A  ++      M E      N  +++ L++ LCR    
Sbjct: 305 LPNCVTYNALIDGHCHDGNFEQALTIL-----EMMEATGPKPNEVSYSALLNGLCRHAKF 359

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                I E M     +    A   MID LCR+G  + + +++  M K G+ P +V+++ +
Sbjct: 360 ELSKSILERMRMNGMIVGCIAYTAMIDGLCRNGLLNESVKLLDKMLKDGVVPDVVTFSVL 419

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++G C+ G      +++ +  + G  P+   Y  L+   C   D+ +A KV   M     
Sbjct: 420 INGFCRVGKIKNVKEIICKMYKAGLAPNSIIYTTLIYNYCKTGDVVEAFKVYVAMSRIGY 479

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                ICN+ + +LC              M +    P+ IT + +ING+   G   +A  
Sbjct: 480 DANCFICNVLVSSLCKDGKVGVAEYFFHHMSKIGNVPNSITFDCIINGYGNSGNGLKAFS 539

Query: 301 VLNDMV-AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG---IVTYNA 356
           + ++M+ AG    P   T+  ++  L   G+ +EA  LL ++     Y P     VTYN 
Sbjct: 540 MFDEMIKAGHH--PSHFTYGGLLKALCRAGKFKEAKRLLDKLH----YIPSAVDTVTYNT 593

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416
           +L   F+   + +A  +F+ M+   V+ DS TYAI+  GL    ++  A  F+ +++   
Sbjct: 594 ILVETFKSGMLTDAVALFDEMVQRNVLPDSYTYAIIFAGLIRRGKMVAALHFYGNLLGKG 653

Query: 417 NIH-DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREA 475
            +  +  +Y   + GL R+G+   A++F  ++  +G+  +++  NV+++G  ++    +A
Sbjct: 654 AVSPEKVMYTTFVDGLFRAGQSKAALYFCEDMEKNGLCADLIATNVILNGYSRMGKMAKA 713

Query: 476 YQILREMRKN-GLNPDAVTWRILDKLHG 502
             I   M     ++P   T+ IL  LHG
Sbjct: 714 GDIFTMMWSGITISPSLATYNIL--LHG 739



 Score =  178 bits (451), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 134/525 (25%), Positives = 247/525 (47%), Gaps = 46/525 (8%)

Query: 10  VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSV 69
           VG+A + F  M  RG  P+V +   L+    +  ++   +  F EM    V P+  T+++
Sbjct: 114 VGDALETFRLMGIRGFNPSVYTCNMLLGKLVKERKVGAVWLFFKEMLARRVCPDVSTFNI 173

Query: 70  LVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAED 129
           L+  +     +++A  L+ K+     EE     +   +  +++  C++G       + + 
Sbjct: 174 LINVLCVEGKLKKAGYLLKKM-----EESGYVPSVVTYNTVLNWYCKKGRYKAALELIDQ 228

Query: 130 MPQGKSVNEEFACGH--MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKH 187
           M  G    E  AC +  ++D LC++ R+     ++  MRKR ++P+ ++YNSI++G  K 
Sbjct: 229 M--GSKGIEADACTYNMLVDDLCKNNRSAKGYLLLKKMRKRMISPNEITYNSIINGFVKE 286

Query: 188 GGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM------------ 235
           G    A ++ +E      LP+  TY  L++G C + + E+A  +L+ M            
Sbjct: 287 GKIGAATRIFQEMSMLNLLPNCVTYNALIDGHCHDGNFEQALTILEMMEATGPKPNEVSY 346

Query: 236 --------------LSKKDVDRTRI------CNIY---LRALCLIKNPTELLNVLVFMLQ 272
                         LSK  ++R R+      C  Y   +  LC      E + +L  ML+
Sbjct: 347 SALLNGLCRHAKFELSKSILERMRMNGMIVGCIAYTAMIDGLCRNGLLNESVKLLDKMLK 406

Query: 273 TQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQ 332
               PDV+T + +INGFC++G+I+   +++  M      AP+++ +TT+I+     G + 
Sbjct: 407 DGVVPDVVTFSVLINGFCRVGKIKNVKEIICKMYKAGL-APNSIIYTTLIYNYCKTGDVV 465

Query: 333 EALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIV 392
           EA  + Y  M + GY       N ++  L +  +V  A+  F+ M  IG V +S T+  +
Sbjct: 466 EAFKV-YVAMSRIGYDANCFICNVLVSSLCKDGKVGVAEYFFHHMSKIGNVPNSITFDCI 524

Query: 393 IDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGV 452
           I+G   S    +A   +D+++   +   ++ Y  ++K LCR+GK  EA   L +L     
Sbjct: 525 INGYGNSGNGLKAFSMFDEMIKAGHHPSHFTYGGLLKALCRAGKFKEAKRLLDKLHYIPS 584

Query: 453 TPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
             + V YN ++    K  M  +A  +  EM +  + PD+ T+ I+
Sbjct: 585 AVDTVTYNTILVETFKSGMLTDAVALFDEMVQRNVLPDSYTYAII 629



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 117/525 (22%), Positives = 237/525 (45%), Gaps = 40/525 (7%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC  ++   +  +   M+  G +   ++YT +I G CR G ++ + K+ D+M   GV
Sbjct: 350 LNGLCRHAKFELSKSILERMRMNGMIVGCIAYTAMIDGLCRNGLLNESVKLLDKMLKDGV 409

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P+ +T+SVL+ G  R   ++    ++ K+++       L+ N+  +  L+ + C+ G V
Sbjct: 410 VPDVVTFSVLINGFCRVGKIKNVKEIICKMYK-----AGLAPNSIIYTTLIYNYCKTGDV 464

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E F++   M +       F C  ++ SLC+ G+   A    + M K G  P+ ++++ I
Sbjct: 465 VEAFKVYVAMSRIGYDANCFICNVLVSSLCKDGKVGVAEYFFHHMSKIGNVPNSITFDCI 524

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++G    G  ++A+ + +E I+ G+ PS  TY  L++ LC     ++A+++L  +     
Sbjct: 525 INGYGNSGNGLKAFSMFDEMIKAGHHPSHFTYGGLLKALCRAGKFKEAKRLLDKLHYIPS 584

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
              T   N  L         T+ + +   M+Q    PD  T   +  G  + G++  AL 
Sbjct: 585 AVDTVTYNTILVETFKSGMLTDAVALFDEMVQRNVLPDSYTYAIIFAGLIRRGKMVAALH 644

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEAL-------------NLLYQVMPQRGY 347
              +++     +P+ V +TT + GL   G+ + AL             +L+   +   GY
Sbjct: 645 FYGNLLGKGAVSPEKVMYTTFVDGLFRAGQSKAALYFCEDMEKNGLCADLIATNVILNGY 704

Query: 348 S----------------------PGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 385
           S                      P + TYN +L G  + + + +   ++N M+  G+  D
Sbjct: 705 SRMGKMAKAGDIFTMMWSGITISPSLATYNILLHGYAKKKNLSKCSNLYNIMMRTGIFPD 764

Query: 386 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY 445
             T   +I G C+S  LD   +    ++      D   +  +I   C + ++ +A   + 
Sbjct: 765 KLTCHSLILGFCKSAMLDVGLKLLKKMLLDGVAVDQCTFNMLIMKYCETDEVGKAFDLVN 824

Query: 446 ELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD 490
            +    + P++  ++ +I    ++S  +E++ +L EM + G  PD
Sbjct: 825 IMNLFDIFPDMTTHDSIISVLSRVSTVQESHLLLHEMLERGCIPD 869



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 108/399 (27%), Positives = 190/399 (47%), Gaps = 10/399 (2%)

Query: 103 NNAAFANLVDSLCREGYVN---EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGAS 159
           N + F  L+    REG V    E FR+        SV   + C  ++  L +  R  GA 
Sbjct: 97  NPSVFDLLIRVYLREGMVGDALETFRLMGIRGFNPSV---YTCNMLLGKLVKE-RKVGAV 152

Query: 160 RVVYV-MRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEG 218
            + +  M  R + P + ++N +++ LC  G   +A  LL++  + GY+PS  TY  ++  
Sbjct: 153 WLFFKEMLARRVCPDVSTFNILINVLCVEGKLKKAGYLLKKMEESGYVPSVVTYNTVLNW 212

Query: 219 LCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPD 278
            C +   + A +++  M SK         N+ +  LC      +   +L  M +    P+
Sbjct: 213 YCKKGRYKAALELIDQMGSKGIEADACTYNMLVDDLCKNNRSAKGYLLLKKMRKRMISPN 272

Query: 279 VITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLL 338
            IT N++INGF K G+I  A ++  +M       P+ VT+  +I G  + G  ++AL +L
Sbjct: 273 EITYNSIINGFVKEGKIGAATRIFQEMSMLNLL-PNCVTYNALIDGHCHDGNFEQALTIL 331

Query: 339 YQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE 398
            ++M   G  P  V+Y+A+L GL R  + E +K +   M   G++     Y  +IDGLC 
Sbjct: 332 -EMMEATGPKPNEVSYSALLNGLCRHAKFELSKSILERMRMNGMIVGCIAYTAMIDGLCR 390

Query: 399 SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVC 458
           +  L+E+ +  D ++    + D   ++ +I G CR GKI      + ++  +G+ PN + 
Sbjct: 391 NGLLNESVKLLDKMLKDGVVPDVVTFSVLINGFCRVGKIKNVKEIICKMYKAGLAPNSII 450

Query: 459 YNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           Y  +I   CK     EA+++   M + G + +     +L
Sbjct: 451 YTTLIYNYCKTGDVVEAFKVYVAMSRIGYDANCFICNVL 489



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 114/467 (24%), Positives = 209/467 (44%), Gaps = 9/467 (1%)

Query: 1    MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
            +  LC   +  EA +L   +       + V+Y T++    ++G +  A  +FDEM    V
Sbjct: 560  LKALCRAGKFKEAKRLLDKLHYIPSAVDTVTYNTILVETFKSGMLTDAVALFDEMVQRNV 619

Query: 61   LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            LP+S TY+++  G++R   +  A       +  +  +  +S     +   VD L R G  
Sbjct: 620  LPDSYTYAIIFAGLIRRGKMVAA----LHFYGNLLGKGAVSPEKVMYTTFVDGLFRAGQS 675

Query: 121  NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLT--PSLVSYN 178
                   EDM +     +  A   +++   R G+   A  + + M   G+T  PSL +YN
Sbjct: 676  KAALYFCEDMEKNGLCADLIATNVILNGYSRMGKMAKAGDI-FTMMWSGITISPSLATYN 734

Query: 179  SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
             ++HG  K     +   L    ++ G  P + T   L+ G C  + L+   K+L+ ML  
Sbjct: 735  ILLHGYAKKKNLSKCSNLYNIMMRTGIFPDKLTCHSLILGFCKSAMLDVGLKLLKKMLLD 794

Query: 239  KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
                     N+ +   C      +  +++  M      PD+ T +++I+   ++  ++E+
Sbjct: 795  GVAVDQCTFNMLIMKYCETDEVGKAFDLVNIMNLFDIFPDMTTHDSIISVLSRVSTVQES 854

Query: 299  LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
              +L++M+  + C PD   +  ++  +  +G I  A  L  + M   G S G V  +A++
Sbjct: 855  HLLLHEMLE-RGCIPDRRQYIALVNRMCRMGHIHGAFKLKDE-MEALGISSGDVAESALV 912

Query: 359  RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
            RGL +  +VEEAK V + ML   ++    T+  ++   C +  L EA +  D + +    
Sbjct: 913  RGLAKCGKVEEAKLVLDFMLRKSLIPTIATFTTLMHMFCRNESLVEALKLKDTMDFCDVK 972

Query: 419  HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDG 465
             D   Y  +I GLC  G +  A+    E+   G+ PN+  Y ++ID 
Sbjct: 973  LDVIAYNVLISGLCADGDVASALKLYKEIKQRGLWPNMTTYCILIDA 1019



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 127/533 (23%), Positives = 233/533 (43%), Gaps = 42/533 (7%)

Query: 1    MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
            +  LC   +VG A   F  M   G+VPN +++  +I+GY  +G    A+ +FDEM   G 
Sbjct: 490  VSSLCKDGKVGVAEYFFHHMSKIGNVPNSITFDCIINGYGNSGNGLKAFSMFDEMIKAGH 549

Query: 61   LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             P+  TY  L++ + R    + A  L+ KL       + ++ N      LV++  + G +
Sbjct: 550  HPSHFTYGGLLKALCRAGKFKEAKRLLDKLHYIPSAVDTVTYNTI----LVETF-KSGML 604

Query: 121  NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVV-YVMRKRGLTPSLVSYNS 179
             +   + ++M Q   + + +    +   L R G+   A      ++ K  ++P  V Y +
Sbjct: 605  TDAVALFDEMVQRNVLPDSYTYAIIFAGLIRRGKMVAALHFYGNLLGKGAVSPEKVMYTT 664

Query: 180  IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
             V GL + G    A    E+  + G         V++ G      + KA  +   M S  
Sbjct: 665  FVDGLFRAGQSKAALYFCEDMEKNGLCADLIATNVILNGYSRMGKMAKAGDIFTMMWSGI 724

Query: 240  DVDRTRIC-NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
             +  +    NI L      KN ++  N+   M++T   PD +T +++I GFCK   ++  
Sbjct: 725  TISPSLATYNILLHGYAKKKNLSKCSNLYNIMMRTGIFPDKLTCHSLILGFCKSAMLDVG 784

Query: 299  LKVLN--------------DMVAGKFCA--------------------PDAVTFTTIIFG 324
            LK+L               +M+  K+C                     PD  T  +II  
Sbjct: 785  LKLLKKMLLDGVAVDQCTFNMLIMKYCETDEVGKAFDLVNIMNLFDIFPDMTTHDSIISV 844

Query: 325  LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 384
            L  V  +QE+ +LL   M +RG  P    Y A++  + R+  +  A ++ + M  +G+ +
Sbjct: 845  LSRVSTVQES-HLLLHEMLERGCIPDRRQYIALVNRMCRMGHIHGAFKLKDEMEALGISS 903

Query: 385  DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFL 444
                 + ++ GL +  +++EAK   D ++  S I     +  ++   CR+  + EA+   
Sbjct: 904  GDVAESALVRGLAKCGKVEEAKLVLDFMLRKSLIPTIATFTTLMHMFCRNESLVEALKLK 963

Query: 445  YELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
              +    V  +++ YNV+I G C       A ++ +E+++ GL P+  T+ IL
Sbjct: 964  DTMDFCDVKLDVIAYNVLISGLCADGDVASALKLYKEIKQRGLWPNMTTYCIL 1016



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 116/480 (24%), Positives = 211/480 (43%), Gaps = 44/480 (9%)

Query: 27  PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVL 86
           P+V  +  LI  Y R G +  A + F  M   G  P+  T ++L+  +++ R V  A  L
Sbjct: 98  PSV--FDLLIRVYLREGMVGDALETFRLMGIRGFNPSVYTCNMLLGKLVKERKVG-AVWL 154

Query: 87  MFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMI 146
            FK     +   D+S     F  L++ LC EG + +   + + M +   V        ++
Sbjct: 155 FFKEMLARRVCPDVS----TFNILINVLCVEGKLKKAGYLLKKMEESGYVPSVVTYNTVL 210

Query: 147 DSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL 206
           +  C+ GR   A  ++  M  +G+     +YN +V  LCK+    + Y LL++  +    
Sbjct: 211 NWYCKKGRYKAALELIDQMGSKGIEADACTYNMLVDDLCKNNRSAKGYLLLKKMRKRMIS 270

Query: 207 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 266
           P+E TY  ++ G   E  +  A ++ Q M                           +LN+
Sbjct: 271 PNEITYNSIINGFVKEGKIGAATRIFQEM--------------------------SMLNL 304

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
           L         P+ +T N +I+G C  G  E+AL +L +M+      P+ V+++ ++ GL 
Sbjct: 305 L---------PNCVTYNALIDGHCHDGNFEQALTIL-EMMEATGPKPNEVSYSALLNGLC 354

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
              + + + ++L + M   G   G + Y A++ GL R   + E+ ++ + ML  GVV D 
Sbjct: 355 RHAKFELSKSIL-ERMRMNGMIVGCIAYTAMIDGLCRNGLLNESVKLLDKMLKDGVVPDV 413

Query: 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE 446
            T++++I+G C   ++   K     +       ++ +Y  +I   C++G + EA      
Sbjct: 414 VTFSVLINGFCRVGKIKNVKEIICKMYKAGLAPNSIIYTTLIYNYCKTGDVVEAFKVYVA 473

Query: 447 LVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           +   G   N    NV++   CK      A      M K G  P+++T+  +   +GN GN
Sbjct: 474 MSRIGYDANCFICNVLVSSLCKDGKVGVAEYFFHHMSKIGNVPNSITFDCIINGYGNSGN 533



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 104/228 (45%), Gaps = 7/228 (3%)

Query: 4    LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            L  +S V E+H L  +M  RG +P+   Y  L++  CR G +  A+K+ DEM   G+   
Sbjct: 845  LSRVSTVQESHLLLHEMLERGCIPDRRQYIALVNRMCRMGHIHGAFKLKDEMEALGISSG 904

Query: 64   SLTYSVLVRGVLRTRDVERAN-VLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
             +  S LVRG+ +   VE A  VL F L       + L    A F  L+   CR   + E
Sbjct: 905  DVAESALVRGLAKCGKVEEAKLVLDFML------RKSLIPTIATFTTLMHMFCRNESLVE 958

Query: 123  VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
              ++ + M       +  A   +I  LC  G    A ++   +++RGL P++ +Y  ++ 
Sbjct: 959  ALKLKDTMDFCDVKLDVIAYNVLISGLCADGDVASALKLYKEIKQRGLWPNMTTYCILID 1018

Query: 183  GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARK 230
             +  +   +   ++L + +Q   + S H    + +GL    D  K+ K
Sbjct: 1019 AIFTNDISLAKGEVLLKDLQERGVISGHWCGGIRQGLIIAMDRLKSMK 1066


>gi|46390363|dbj|BAD15828.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|215697127|dbj|BAG91121.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 554

 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 120/385 (31%), Positives = 191/385 (49%), Gaps = 14/385 (3%)

Query: 113 SLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTP 172
           SL R G ++E  R+     +     +   C  +I  L  SGR   A RV+         P
Sbjct: 74  SLVRRGELDEALRLVGSARR----PDAGTCAALIKKLSASGRTAEARRVLA-----ACGP 124

Query: 173 SLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVL 232
            +++YN++V G C  G    A +L+ E       P  +TY  L+ GLCG      A  VL
Sbjct: 125 DVMAYNAMVAGYCGAGQLDAARRLVAE---MPVEPDAYTYNTLIRGLCGRGRTANALAVL 181

Query: 233 QFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKM 292
             ML ++ V       I L A C      + + +L  M    C PD++T N V+NG C+ 
Sbjct: 182 DEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQE 241

Query: 293 GRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIV 352
           GR+++A++ L ++ +   C P+ V++  ++ GL    R ++A  L+ + M Q+G  P +V
Sbjct: 242 GRVDDAIEFLKNLPS-YGCEPNTVSYNIVLKGLCTAERWEDAEELMGE-MGQKGCPPNVV 299

Query: 353 TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI 412
           T+N ++  L R   VE A EV   +   G   +S +Y  ++   C+  ++D+A  F D +
Sbjct: 300 TFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLM 359

Query: 413 VWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMK 472
           V      D   Y  ++  LCRSG++  AV  L++L D G  P ++ YN VIDG  K    
Sbjct: 360 VSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKT 419

Query: 473 REAYQILREMRKNGLNPDAVTWRIL 497
           +EA ++L EM   GL PD +T+  +
Sbjct: 420 KEALELLNEMVSKGLQPDIITYSTI 444



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 126/479 (26%), Positives = 236/479 (49%), Gaps = 55/479 (11%)

Query: 27  PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVL 86
           P+V++Y  ++ GYC  G++D A ++  EM    V P++ TY+ L+RG             
Sbjct: 124 PDVMAYNAMVAGYCGAGQLDAARRLVAEMP---VEPDAYTYNTLIRG------------- 167

Query: 87  MFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMI 146
                                      LC  G       + ++M + + V +      ++
Sbjct: 168 ---------------------------LCGRGRTANALAVLDEMLRRRCVPDVVTYTILL 200

Query: 147 DSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL 206
           ++ C+      A +++  MR +G TP +V+YN +V+G+C+ G    A + L+    +G  
Sbjct: 201 EATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCE 260

Query: 207 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 266
           P+  +Y ++++GLC     E A +++  M  K         N+ +  LC        L V
Sbjct: 261 PNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEV 320

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
           L  + +  C P+ ++ N +++ FCK  ++++A+  L+ MV+ + C PD V++ T++  L 
Sbjct: 321 LEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVS-RGCYPDIVSYNTLLTALC 379

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
             G +  A+ LL+Q +  +G +P +++YN V+ GL +  + +EA E+ N M+  G+  D 
Sbjct: 380 RSGEVDVAVELLHQ-LKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDI 438

Query: 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV-YAAMIKGLCRSGKIHEAVHFLY 445
            TY+ +  GLC  +++++A R +   V    I  N V Y A+I GLC+  + H A+    
Sbjct: 439 ITYSTIAAGLCREDRIEDAIRAFGK-VQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFA 497

Query: 446 ELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM------RKNGLNPDAVTWRILD 498
            ++ +G  PN   Y ++I+G     + +EA  +L E+      RK+ +N  A+  R+LD
Sbjct: 498 YMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDELCSRGVVRKSLINKGAI--RLLD 554



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 128/458 (27%), Positives = 215/458 (46%), Gaps = 21/458 (4%)

Query: 41  RTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRT-RDVERANVLMFKLWERMKEEED 99
           R GE+D A ++    R     P++ T + L++ +  + R  E   VL     + M     
Sbjct: 77  RRGELDEALRLVGSARR----PDAGTCAALIKKLSASGRTAEARRVLAACGPDVM----- 127

Query: 100 LSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGAS 159
                 A+  +V   C  G ++   R+  +MP      + +    +I  LC  GR   A 
Sbjct: 128 ------AYNAMVAGYCGAGQLDAARRLVAEMPVEP---DAYTYNTLIRGLCGRGRTANAL 178

Query: 160 RVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGL 219
            V+  M +R   P +V+Y  ++   CK  G  +A +LL+E    G  P   TY V+V G+
Sbjct: 179 AVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGI 238

Query: 220 CGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDV 279
           C E  ++ A + L+ + S      T   NI L+ LC  +   +   ++  M Q  C P+V
Sbjct: 239 CQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNV 298

Query: 280 ITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLY 339
           +T N +I+  C+ G +E AL+VL + +    C P+++++  ++       ++ +A+  L 
Sbjct: 299 VTFNMLISFLCRKGLVEPALEVL-EQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFL- 356

Query: 340 QVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCES 399
            +M  RG  P IV+YN +L  L R   V+ A E+ + +   G      +Y  VIDGL ++
Sbjct: 357 DLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKA 416

Query: 400 NQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCY 459
            +  EA    +++V      D   Y+ +  GLCR  +I +A+    ++ D G+ PN V Y
Sbjct: 417 GKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLY 476

Query: 460 NVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           N +I G CK      A  +   M  NG  P+  T+ IL
Sbjct: 477 NAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTIL 514



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 94/386 (24%), Positives = 173/386 (44%), Gaps = 42/386 (10%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C  S   +A KL  +M+ +G  P++V+Y  +++G C+ G +D A +    +   G 
Sbjct: 200 LEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGC 259

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN+++Y+++++G+      E A  LM ++ ++         N   F  L+  LCR+G V
Sbjct: 260 EPNTVSYNIVLKGLCTAERWEDAEELMGEMGQK-----GCPPNVVTFNMLISFLCRKGLV 314

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                + E +P+        +   ++ + C+  +   A   + +M  RG  P +VSYN++
Sbjct: 315 EPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTL 374

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +  LC+ G    A +LL +    G  P   +Y  +++GL      ++A ++L  M+SK  
Sbjct: 375 LTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKG- 433

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                              QPD+IT +T+  G C+  RIE+A++
Sbjct: 434 ----------------------------------LQPDIITYSTIAAGLCREDRIEDAIR 459

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
                V      P+ V +  II GL        A++ L+  M   G  P   TY  ++ G
Sbjct: 460 AFGK-VQDMGIRPNTVLYNAIILGLCKRRETHSAID-LFAYMIGNGCMPNESTYTILIEG 517

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADS 386
           L     ++EA+++ + +   GVV  S
Sbjct: 518 LAYEGLIKEARDLLDELCSRGVVRKS 543



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 118/251 (47%), Gaps = 5/251 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC    V  A ++   +   G  PN +SY  L+H +C+  +MD A    D M   G  P+
Sbjct: 308 LCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPD 367

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            ++Y+ L+  + R+ +V+ A  L+ +L ++      +S N      ++D L + G   E 
Sbjct: 368 IVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNT-----VIDGLTKAGKTKEA 422

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             +  +M       +      +   LCR  R   A R    ++  G+ P+ V YN+I+ G
Sbjct: 423 LELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILG 482

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LCK      A  L    I  G +P+E TY +L+EGL  E  +++AR +L  + S+  V +
Sbjct: 483 LCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDELCSRGVVRK 542

Query: 244 TRICNIYLRAL 254
           + I    +R L
Sbjct: 543 SLINKGAIRLL 553



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 102/214 (47%), Gaps = 14/214 (6%)

Query: 286 INGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQR 345
           +    + G ++EAL+++     G    PDA T   +I  L   GR  EA  +L       
Sbjct: 72  LRSLVRRGELDEALRLV-----GSARRPDAGTCAALIKKLSASGRTAEARRVLAAC---- 122

Query: 346 GYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA 405
              P ++ YNA++ G     +++ A+ +   M    V  D+ TY  +I GLC   +   A
Sbjct: 123 --GPDVMAYNAMVAGYCGAGQLDAARRLVAEM---PVEPDAYTYNTLIRGLCGRGRTANA 177

Query: 406 KRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDG 465
               D+++    + D   Y  +++  C+     +A+  L E+ D G TP+IV YNVV++G
Sbjct: 178 LAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNG 237

Query: 466 ACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
            C+     +A + L+ +   G  P+ V++ I+ K
Sbjct: 238 ICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLK 271


>gi|357137687|ref|XP_003570431.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
           mitochondrial-like [Brachypodium distachyon]
          Length = 938

 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 141/569 (24%), Positives = 259/569 (45%), Gaps = 67/569 (11%)

Query: 3   QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           + C  + V +A  L+ +M  +G +P+VV+ + L+ G C+ G    AY +F EM   G  P
Sbjct: 253 EYCRRNAVDDAFSLYEEMVRKGVLPDVVTLSALVGGLCKDGRFSEAYALFREMEKIGAAP 312

Query: 63  NSLTYSVLVRGVLRTRD-----------VERANVLMFKLWE----------RMKEEEDL- 100
           N +TY +L+  + + +            V R  V+   ++           ++ E +D+ 
Sbjct: 313 NHVTYCMLIDTLAKAQRGNESLSLLGEVVSRGVVMDLIMYTALMDWLCKEGKIDEAKDMF 372

Query: 101 --------SVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRS 152
                   + N   +  L+D+LC+ G V+   ++  +M +            +I+ L + 
Sbjct: 373 RHALSDNHTPNGVTYTVLIDALCKAGNVDGAEQVLSEMEEKSISPNVVTFSSIINGLVKR 432

Query: 153 GRNHGASRVVYVMRKRGLTPSLVSY----------------------------------- 177
           G    A+  +  M++RG+ P++V+Y                                   
Sbjct: 433 GWVGKATDYMREMKERGIDPNVVTYGTVIDGSFKCLGQEAALDVYHEMLCEGVEVNKFIV 492

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
           +S+V+GL K+G   +A  L  E  + G L     Y  L++GL    +L  A KV Q +  
Sbjct: 493 DSLVNGLKKNGKIEKAEALFREMNERGVLLDHVNYTTLIDGLFKTGNLPAAFKVGQELTE 552

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
           K  +    + N+++  LC++    E  + L  M  T  +PD +T NT+I    + G+  +
Sbjct: 553 KNLLPDAVVYNVFINCLCMLGKSKEAESFLEEMQSTGLKPDQVTYNTMIAAQSREGKTAK 612

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           ALK+LN M       P+ +T++T+I GL   G +++A  LL + M   G+SP  +T+  V
Sbjct: 613 ALKLLNGMKRSSI-KPNLITYSTLIVGLFEAGAVEKAKYLLNE-MSSSGFSPTSLTHRRV 670

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 417
           L+   + RR +   E+   M+  G+ AD T Y  ++  LC +    +A    +++     
Sbjct: 671 LQACSQGRRSDLILEIHEWMMNAGLCADITVYNTLVRVLCYNGMTRKAMVVLEEMSGRGI 730

Query: 418 IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQ 477
             D   + A+I G  +SG +  A     +++  G++PN+  +N ++ G        E+  
Sbjct: 731 APDTITFNALILGHFKSGHLDNAFSTYDQMLYHGISPNVATFNTLLGGLESAGRIGESDM 790

Query: 478 ILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           +L EM+K G+ P  +T+ IL   +G + N
Sbjct: 791 VLNEMKKRGIEPSNLTYDILVTGYGKQSN 819



 Score =  188 bits (477), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 131/502 (26%), Positives = 231/502 (46%), Gaps = 7/502 (1%)

Query: 10  VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSV 69
           VG+A     +MK RG  PNVV+Y T+I G  +    + A  V+ EM   GV  N      
Sbjct: 435 VGKATDYMREMKERGIDPNVVTYGTVIDGSFKCLGQEAALDVYHEMLCEGVEVNKFIVDS 494

Query: 70  LVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAED 129
           LV G+ +   +E+A  L  ++ ER      + +++  +  L+D L + G +   F++ ++
Sbjct: 495 LVNGLKKNGKIEKAEALFREMNER-----GVLLDHVNYTTLIDGLFKTGNLPAAFKVGQE 549

Query: 130 MPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG 189
           + +   + +       I+ LC  G++  A   +  M+  GL P  V+YN+++    + G 
Sbjct: 550 LTEKNLLPDAVVYNVFINCLCMLGKSKEAESFLEEMQSTGLKPDQVTYNTMIAAQSREGK 609

Query: 190 CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNI 249
             +A +LL    +    P+  TY  L+ GL     +EKA+ +L  M S      +     
Sbjct: 610 TAKALKLLNGMKRSSIKPNLITYSTLIVGLFEAGAVEKAKYLLNEMSSSGFSPTSLTHRR 669

Query: 250 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK 309
            L+A    +    +L +  +M+      D+   NT++   C  G   +A+ VL +M +G+
Sbjct: 670 VLQACSQGRRSDLILEIHEWMMNAGLCADITVYNTLVRVLCYNGMTRKAMVVLEEM-SGR 728

Query: 310 FCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEE 369
             APD +TF  +I G    G +  A +  Y  M   G SP + T+N +L GL    R+ E
Sbjct: 729 GIAPDTITFNALILGHFKSGHLDNAFST-YDQMLYHGISPNVATFNTLLGGLESAGRIGE 787

Query: 370 AKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIK 429
           +  V N M   G+   + TY I++ G  + +   EA R + ++V    +     Y A+I 
Sbjct: 788 SDMVLNEMKKRGIEPSNLTYDILVTGYGKQSNKVEAVRLYCEMVGKGFLPKVSTYNALIS 847

Query: 430 GLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNP 489
              + G + +A     E+ + GV P    Y++++ G  KL    E  + L++M++ G +P
Sbjct: 848 DFSKVGMMSQAKELFNEMQNRGVLPTSCTYDILVSGWSKLRNGTEVRKFLKDMKEKGFSP 907

Query: 490 DAVTWRILDKLHGNRGNDFGLR 511
              T   + +     G  +  R
Sbjct: 908 SKGTLSSISRAFSKPGMSWEAR 929



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 138/506 (27%), Positives = 242/506 (47%), Gaps = 11/506 (2%)

Query: 4   LCGLSRVG--EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVL 61
           + G S  G      L  +M  RG   + V+  T++ G CR G +D A  + + M   G +
Sbjct: 110 MSGFSEQGGLAPEALLAEMCKRGVPFDAVTVNTVLVGLCRDGRVDRAAALAEVMVRGGGI 169

Query: 62  P--NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGY 119
              + + ++ LV G  +  D+E A    F + ERMK +  + V+   + +LV  LCR G 
Sbjct: 170 GGLDVVGWNSLVDGYCKVGDMETA----FAVAERMKAQ-GVGVDVVGYNSLVAGLCRAGE 224

Query: 120 VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           V+    + + M +             I   CR      A  +   M ++G+ P +V+ ++
Sbjct: 225 VDAARDMVDTMKRDGVEPNVVTYTMFIVEYCRRNAVDDAFSLYEEMVRKGVLPDVVTLSA 284

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           +V GLCK G    AY L  E  + G  P+  TY +L++ L       ++  +L  ++S+ 
Sbjct: 285 LVGGLCKDGRFSEAYALFREMEKIGAAPNHVTYCMLIDTLAKAQRGNESLSLLGEVVSRG 344

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
            V    +    +  LC      E  ++    L     P+ +T   +I+  CK G ++ A 
Sbjct: 345 VVMDLIMYTALMDWLCKEGKIDEAKDMFRHALSDNHTPNGVTYTVLIDALCKAGNVDGAE 404

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           +VL++M   K  +P+ VTF++II GL+  G + +A + + + M +RG  P +VTY  V+ 
Sbjct: 405 QVLSEM-EEKSISPNVVTFSSIINGLVKRGWVGKATDYMRE-MKERGIDPNVVTYGTVID 462

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
           G F+    E A +V++ ML  GV  +      +++GL ++ ++++A+  + ++     + 
Sbjct: 463 GSFKCLGQEAALDVYHEMLCEGVEVNKFIVDSLVNGLKKNGKIEKAEALFREMNERGVLL 522

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           D+  Y  +I GL ++G +  A     EL +  + P+ V YNV I+  C L   +EA   L
Sbjct: 523 DHVNYTTLIDGLFKTGNLPAAFKVGQELTEKNLLPDAVVYNVFINCLCMLGKSKEAESFL 582

Query: 480 REMRKNGLNPDAVTWRILDKLHGNRG 505
            EM+  GL PD VT+  +       G
Sbjct: 583 EEMQSTGLKPDQVTYNTMIAAQSREG 608



 Score =  177 bits (450), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 129/496 (26%), Positives = 238/496 (47%), Gaps = 9/496 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVP--NVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVL 61
           LC   RV  A  L   M   G +   +VV + +L+ GYC+ G+M+ A+ V + M+  GV 
Sbjct: 147 LCRDGRVDRAAALAEVMVRGGGIGGLDVVGWNSLVDGYCKVGDMETAFAVAERMKAQGVG 206

Query: 62  PNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVN 121
            + + Y+ LV G+ R  +V+ A  ++    + MK +  +  N   +   +   CR   V+
Sbjct: 207 VDVVGYNSLVAGLCRAGEVDAARDMV----DTMKRD-GVEPNVVTYTMFIVEYCRRNAVD 261

Query: 122 EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
           + F + E+M +   + +      ++  LC+ GR   A  +   M K G  P+ V+Y  ++
Sbjct: 262 DAFSLYEEMVRKGVLPDVVTLSALVGGLCKDGRFSEAYALFREMEKIGAAPNHVTYCMLI 321

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
             L K      +  LL E +  G +     Y  L++ LC E  +++A+ + +  LS    
Sbjct: 322 DTLAKAQRGNESLSLLGEVVSRGVVMDLIMYTALMDWLCKEGKIDEAKDMFRHALSDNHT 381

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
                  + + ALC   N      VL  M +    P+V+T +++ING  K G + +A   
Sbjct: 382 PNGVTYTVLIDALCKAGNVDGAEQVLSEMEEKSISPNVVTFSSIINGLVKRGWVGKATDY 441

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
           + +M   +   P+ VT+ T+I G       + AL++ ++++ + G        ++++ GL
Sbjct: 442 MREMKE-RGIDPNVVTYGTVIDGSFKCLGQEAALDVYHEMLCE-GVEVNKFIVDSLVNGL 499

Query: 362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
            +  ++E+A+ +F  M   GV+ D   Y  +IDGL ++  L  A +   ++   + + D 
Sbjct: 500 KKNGKIEKAEALFREMNERGVLLDHVNYTTLIDGLFKTGNLPAAFKVGQELTEKNLLPDA 559

Query: 422 YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
            VY   I  LC  GK  EA  FL E+  +G+ P+ V YN +I    +     +A ++L  
Sbjct: 560 VVYNVFINCLCMLGKSKEAESFLEEMQSTGLKPDQVTYNTMIAAQSREGKTAKALKLLNG 619

Query: 482 MRKNGLNPDAVTWRIL 497
           M+++ + P+ +T+  L
Sbjct: 620 MKRSSIKPNLITYSTL 635



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 87/322 (27%), Positives = 153/322 (47%), Gaps = 5/322 (1%)

Query: 175 VSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQF 234
           VSYN ++ G  + GG +    LL E  + G      T   ++ GLC +  +++A  + + 
Sbjct: 104 VSYNVVMSGFSEQGG-LAPEALLAEMCKRGVPFDAVTVNTVLVGLCRDGRVDRAAALAEV 162

Query: 235 MLSKKDVDRTRIC--NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKM 292
           M+    +    +   N  +   C + +      V   M       DV+  N+++ G C+ 
Sbjct: 163 MVRGGGIGGLDVVGWNSLVDGYCKVGDMETAFAVAERMKAQGVGVDVVGYNSLVAGLCRA 222

Query: 293 GRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIV 352
           G ++ A  ++ D +      P+ VT+T  I        + +A +L Y+ M ++G  P +V
Sbjct: 223 GEVDAARDMV-DTMKRDGVEPNVVTYTMFIVEYCRRNAVDDAFSL-YEEMVRKGVLPDVV 280

Query: 353 TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI 412
           T +A++ GL +  R  EA  +F  M  IG   +  TY ++ID L ++ + +E+     ++
Sbjct: 281 TLSALVGGLCKDGRFSEAYALFREMEKIGAAPNHVTYCMLIDTLAKAQRGNESLSLLGEV 340

Query: 413 VWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMK 472
           V    + D  +Y A++  LC+ GKI EA       +    TPN V Y V+ID  CK    
Sbjct: 341 VSRGVVMDLIMYTALMDWLCKEGKIDEAKDMFRHALSDNHTPNGVTYTVLIDALCKAGNV 400

Query: 473 REAYQILREMRKNGLNPDAVTW 494
             A Q+L EM +  ++P+ VT+
Sbjct: 401 DGAEQVLSEMEEKSISPNVVTF 422



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 82/367 (22%), Positives = 145/367 (39%), Gaps = 65/367 (17%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC L +  EA     +M+S G  P+ V+Y T+I    R G+   A K+ + M+   + PN
Sbjct: 569 LCMLGKSKEAESFLEEMQSTGLKPDQVTYNTMIAAQSREGKTAKALKLLNGMKRSSIKPN 628

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLS---------------------- 101
            +TYS L+ G+     VE+A  L+ ++         L+                      
Sbjct: 629 LITYSTLIVGLFEAGAVEKAKYLLNEMSSSGFSPTSLTHRRVLQACSQGRRSDLILEIHE 688

Query: 102 --------VNNAAFANLVDSLCREGYVNEVFRIAEDM------PQGKSVNE----EFACG 143
                    +   +  LV  LC  G   +   + E+M      P   + N      F  G
Sbjct: 689 WMMNAGLCADITVYNTLVRVLCYNGMTRKAMVVLEEMSGRGIAPDTITFNALILGHFKSG 748

Query: 144 HM-------------------------IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
           H+                         +  L  +GR   +  V+  M+KRG+ PS ++Y+
Sbjct: 749 HLDNAFSTYDQMLYHGISPNVATFNTLLGGLESAGRIGESDMVLNEMKKRGIEPSNLTYD 808

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
            +V G  K    + A +L  E +  G+LP   TY  L+        + +A+++   M ++
Sbjct: 809 ILVTGYGKQSNKVEAVRLYCEMVGKGFLPKVSTYNALISDFSKVGMMSQAKELFNEMQNR 868

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
             +  +   +I +     ++N TE+   L  M +    P   TL+++   F K G   EA
Sbjct: 869 GVLPTSCTYDILVSGWSKLRNGTEVRKFLKDMKEKGFSPSKGTLSSISRAFSKPGMSWEA 928

Query: 299 LKVLNDM 305
            ++L ++
Sbjct: 929 RRLLKNL 935


>gi|413953163|gb|AFW85812.1| hypothetical protein ZEAMMB73_202457 [Zea mays]
          Length = 731

 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 135/503 (26%), Positives = 228/503 (45%), Gaps = 62/503 (12%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           +C   ++ +A K+F +M   G  P+ VSY TL+ GYC+ G    A  VF EM   G++P+
Sbjct: 270 MCKAGKMEDARKVFDEMVREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPD 329

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +T++ L+  + +  ++ERA  L+ ++ ER      L +N   F  L+D  C++G++++ 
Sbjct: 330 VVTFTSLIHVMCKAGNLERAVTLVRQMRER-----GLQMNEVTFTALIDGFCKKGFLDDA 384

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
                 M Q +          +I+  C  GR   A  +++ M  +GL P +V+Y++I+  
Sbjct: 385 LLAVRGMKQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISA 444

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK+     A++L ++ ++ G LP   TY  L+  LCGE  L  A               
Sbjct: 445 YCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCGEKRLSDAH-------------- 490

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                       L KN          M++   QPD  T  ++I+G CK G +E AL + +
Sbjct: 491 -----------VLFKN----------MIKLGLQPDEFTYTSLIDGHCKEGNVESALSLHD 529

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            MV      PD VT++ +I GL    R  EA  LL+++     Y    +  N     L  
Sbjct: 530 KMVKAGVL-PDVVTYSVLINGLSKSARAMEAQQLLFKL-----YHEDPIPANTKYDALMH 583

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
             R  E K V                  ++ G C    ++EA + +  ++  +   D  V
Sbjct: 584 CCRKAELKSVL----------------ALLKGFCMKGLMNEADKVYQSMLDRNWNLDGSV 627

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y+ +I G CR+G + +A+ F  +++  G  PN      +I G  +  M  EA Q+++++ 
Sbjct: 628 YSVLIHGHCRAGNVMKALSFHKQMLQGGFAPNSTSTISLIRGLFENGMVVEADQVIQQLL 687

Query: 484 KNGLNPDAVTWRILDKLHGNRGN 506
                 DA   + L  L+ N GN
Sbjct: 688 NYCSLADAEASKALIDLNLNEGN 710



 Score =  192 bits (487), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 137/516 (26%), Positives = 234/516 (45%), Gaps = 69/516 (13%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
            A + F  M S G  PNV +Y  L+   C  G    A  +  +MR  G  PN +TY+ LV
Sbjct: 173 SARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLV 232

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDM- 130
               R  +V+ A  L+      M  E  L  N   F ++V+ +C+ G + +  ++ ++M 
Sbjct: 233 AAFFRAGEVDGAERLV-----GMMREGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMV 287

Query: 131 -----PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLC 185
                P G S N       ++   C++G +H A  V   M ++G+ P +V++ S++H +C
Sbjct: 288 REGLAPDGVSYNT------LVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMC 341

Query: 186 KHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTR 245
           K G   RA  L+ +  + G   +E T+  L++G C +  L+ A      +L+ + + + R
Sbjct: 342 KAGNLERAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDA------LLAVRGMKQCR 395

Query: 246 ICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM 305
           I                             +P V+  N +ING+C +GR++EA ++L++M
Sbjct: 396 I-----------------------------KPSVVCYNALINGYCMVGRMDEARELLHEM 426

Query: 306 VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLR 365
            A K   PD VT++TII           A   L Q M ++G  P  +TY++++R L   +
Sbjct: 427 EA-KGLKPDVVTYSTIISAYCKNCDTHSAFE-LNQQMLEKGVLPDAITYSSLIRVLCGEK 484

Query: 366 RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYA 425
           R+ +A  +F  M+ +G+  D  TY  +IDG C+   ++ A    D +V    + D   Y+
Sbjct: 485 RLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVESALSLHDKMVKAGVLPDVVTYS 544

Query: 426 AMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYN---------------VVIDGACKLS 470
            +I GL +S +  EA   L++L      P    Y+                ++ G C   
Sbjct: 545 VLINGLSKSARAMEAQQLLFKLYHEDPIPANTKYDALMHCCRKAELKSVLALLKGFCMKG 604

Query: 471 MKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           +  EA ++ + M     N D   + +L   H   GN
Sbjct: 605 LMNEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGN 640



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 131/506 (25%), Positives = 242/506 (47%), Gaps = 59/506 (11%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LCG     EA  +  DM+  G  PNVV+Y TL+  + R GE+D A ++   MR  G+ PN
Sbjct: 200 LCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMREGGLKPN 259

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +T++ +V G+ +   +E A                          + D + REG     
Sbjct: 260 LVTFNSMVNGMCKAGKMEDAR------------------------KVFDEMVREGLA--- 292

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
                  P G S N       ++   C++G +H A  V   M ++G+ P +V++ S++H 
Sbjct: 293 -------PDGVSYNT------LVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHV 339

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           +CK G   RA  L+ +  + G   +E T+  L++G C +  L+ A   ++ M  +  +  
Sbjct: 340 MCKAGNLERAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGM-KQCRIKP 398

Query: 244 TRIC-NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
           + +C N  +   C++    E   +L  M     +PDV+T +T+I+ +CK      A + L
Sbjct: 399 SVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFE-L 457

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
           N  +  K   PDA+T++++I  L    R+ +A ++L++ M + G  P   TY +++ G  
Sbjct: 458 NQQMLEKGVLPDAITYSSLIRVLCGEKRLSDA-HVLFKNMIKLGLQPDEFTYTSLIDGHC 516

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKR-----FWDDIVWPSN 417
           +   VE A  + + M+  GV+ D  TY+++I+GL +S +  EA++     + +D +  + 
Sbjct: 517 KEGNVESALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHEDPIPANT 576

Query: 418 IHDNYVYA----------AMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGAC 467
            +D  ++           A++KG C  G ++EA      ++D     +   Y+V+I G C
Sbjct: 577 KYDALMHCCRKAELKSVLALLKGFCMKGLMNEADKVYQSMLDRNWNLDGSVYSVLIHGHC 636

Query: 468 KLSMKREAYQILREMRKNGLNPDAVT 493
           +     +A    ++M + G  P++ +
Sbjct: 637 RAGNVMKALSFHKQMLQGGFAPNSTS 662



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 91/333 (27%), Positives = 168/333 (50%), Gaps = 11/333 (3%)

Query: 169 GLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKA 228
           G  PS+++YN+++  L        A +  +  +  G  P+ +TY +LV  LCG    ++A
Sbjct: 151 GYVPSVLAYNAVLLAL-SDASLTSARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEA 209

Query: 229 RKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVING 288
             +L+ M            N  + A            ++  M +   +P+++T N+++NG
Sbjct: 210 LSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMREGGLKPNLVTFNSMVNG 269

Query: 289 FCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYS 348
            CK G++E+A KV ++MV     APD V++ T++ G    G   EAL++  + M Q+G  
Sbjct: 270 MCKAGKMEDARKVFDEMVREGL-APDGVSYNTLVGGYCKAGCSHEALSVFAE-MTQKGIM 327

Query: 349 PGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA--- 405
           P +VT+ +++  + +   +E A  +   M   G+  +  T+  +IDG C+   LD+A   
Sbjct: 328 PDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLA 387

Query: 406 -KRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
            +      + PS +     Y A+I G C  G++ EA   L+E+   G+ P++V Y+ +I 
Sbjct: 388 VRGMKQCRIKPSVV----CYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIIS 443

Query: 465 GACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
             CK      A+++ ++M + G+ PDA+T+  L
Sbjct: 444 AYCKNCDTHSAFELNQQMLEKGVLPDAITYSSL 476


>gi|41152688|dbj|BAD08213.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 762

 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 139/515 (26%), Positives = 244/515 (47%), Gaps = 42/515 (8%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           +A+  + +M  R   P+VV+Y+++I   C+   MD A +V   M   GV+PN +TY+ ++
Sbjct: 214 KAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSIL 273

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP 131
            G   +   + A   + K+     E + ++ N+     L+D LC+ G   E  +I + M 
Sbjct: 274 HGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNS-----LMDYLCKNGRSTEARKIFDSMT 328

Query: 132 ---------------QGKSVNEEFACGH-MIDSLCRSG-------------------RNH 156
                          QG +        H ++D + R+G                   +  
Sbjct: 329 KRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVD 388

Query: 157 GASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLV 216
            A  V   MR+ GL P++V+Y +++  LCK G    A    E+ I  G  P+   Y  L+
Sbjct: 389 EAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLI 448

Query: 217 EGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQ 276
             LC     +KA +++  ML +     T   N  + + C      E   +   M++   +
Sbjct: 449 HSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVK 508

Query: 277 PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALN 336
           P+VIT +T+I+G+C  G+++EA K+L+ M +     PD VT+ T+I G   V R+ +AL 
Sbjct: 509 PNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGM-KPDCVTYNTLINGYCRVSRMDDALA 567

Query: 337 LLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 396
           L ++ M   G SP I+TYN +L+GLF  RR   AKE++  +   G   + +TY I++ GL
Sbjct: 568 L-FKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGTQLELSTYNIILHGL 626

Query: 397 CESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNI 456
           C++N  DEA R + ++       +   +  MI  L + G+  EA      L  +G+ P++
Sbjct: 627 CKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDV 686

Query: 457 VCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 491
             Y+++ +   +  +  E   +   M +NG   ++
Sbjct: 687 RTYSLMAENLIEQGLLEELDDLFLSMEENGCTANS 721



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 129/515 (25%), Positives = 239/515 (46%), Gaps = 50/515 (9%)

Query: 4   LCGLSRVGEAHKLFF---DMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           LC  +R  EA +L     D +  G  P+VVSYTT+I+G+ + G+ D AY  + EM    +
Sbjct: 168 LCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRI 227

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TYS ++  + + + +++A  ++  + +       +  N   + +++   C     
Sbjct: 228 SPDVVTYSSIIAALCKGQAMDKAMEVLTTMVK-----NGVMPNCMTYNSILHGYCSSEQP 282

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E     + M       +      ++D LC++GR+  A ++   M KRGL P + +Y ++
Sbjct: 283 KEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTL 342

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G    G  +  + LL+  ++ G  P  H + +L+   C  +  EK             
Sbjct: 343 LQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILI---CAYAKQEK------------- 386

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           VD                   E + V   M Q    P+V+T   VI   CK G +++A+ 
Sbjct: 387 VD-------------------EAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAML 427

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
               M+  +   P+ + +T++I  L    +  +A  L+ + M  RG     + +N+++  
Sbjct: 428 YFEQMI-DEGLTPNIIVYTSLIHSLCIFDKWDKAEELILE-MLDRGICLNTIFFNSIIHS 485

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
             +  RV E++++F+ M+ IGV  +  TY+ +IDG C + ++DEA +    +       D
Sbjct: 486 HCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPD 545

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              Y  +I G CR  ++ +A+    E+V SGV+PNI+ YN+++ G         A ++  
Sbjct: 546 CVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYV 605

Query: 481 EMRKNGLNPDAVTWRILDKLHG---NRGNDFGLRI 512
            + K+G   +  T+ I+  LHG   N   D  LR+
Sbjct: 606 GITKSGTQLELSTYNII--LHGLCKNNLTDEALRM 638



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 118/507 (23%), Positives = 231/507 (45%), Gaps = 38/507 (7%)

Query: 26  VPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRG------------ 73
            P V +Y  LI   CR G +D+ +     +   G    ++T++ L++G            
Sbjct: 84  TPTVHTYGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMD 143

Query: 74  -VLR-------TRDVERANVLMFKLWERMKEEEDLSV--------------NNAAFANLV 111
            VLR         DV    +L+  L +  + +E L +              +  ++  ++
Sbjct: 144 IVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVI 203

Query: 112 DSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLT 171
           +   +EG  ++ +    +M   +   +      +I +LC+      A  V+  M K G+ 
Sbjct: 204 NGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVM 263

Query: 172 PSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKV 231
           P+ ++YNSI+HG C       A   L++    G  P   TY  L++ LC      +ARK+
Sbjct: 264 PNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKI 323

Query: 232 LQFMLSKK-DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFC 290
              M  +  + D    C + L+         E+  +L  M++    PD    N +I  + 
Sbjct: 324 FDSMTKRGLEPDIATYCTL-LQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYA 382

Query: 291 KMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG 350
           K  +++EA+ V + M       P+ VT+  +I  L   G + +A+ L ++ M   G +P 
Sbjct: 383 KQEKVDEAMLVFSKMRQHGL-NPNVVTYGAVIGILCKSGSVDDAM-LYFEQMIDEGLTPN 440

Query: 351 IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD 410
           I+ Y +++  L    + ++A+E+   ML  G+  ++  +  +I   C+  ++ E+++ +D
Sbjct: 441 IIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFD 500

Query: 411 DIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLS 470
            +V      +   Y+ +I G C +GK+ EA   L  +   G+ P+ V YN +I+G C++S
Sbjct: 501 LMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVS 560

Query: 471 MKREAYQILREMRKNGLNPDAVTWRIL 497
              +A  + +EM  +G++P+ +T+ I+
Sbjct: 561 RMDDALALFKEMVSSGVSPNIITYNII 587



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 114/463 (24%), Positives = 207/463 (44%), Gaps = 42/463 (9%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           MD LC   R  EA K+F  M  RG  P++ +Y TL+ GY   G +   + + D M   G+
Sbjct: 308 MDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGI 367

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+   +++L+    +   V+ A ++  K+      +  L+ N   +  ++  LC+ G V
Sbjct: 368 HPDHHVFNILICAYAKQEKVDEAMLVFSKM-----RQHGLNPNVVTYGAVIGILCKSGSV 422

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           ++     E M              +I SLC   +   A  ++  M  RG+  + + +NSI
Sbjct: 423 DDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSI 482

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +H  CK G  + + +L +  ++ G  P+  TY  L++G C    +++A K+L  M S   
Sbjct: 483 IHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFS--- 539

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                              +PD +T NT+ING+C++ R+++AL 
Sbjct: 540 --------------------------------VGMKPDCVTYNTLINGYCRVSRMDDALA 567

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +  +MV+    +P+ +T+  I+ GL +  R   A  L Y  + + G    + TYN +L G
Sbjct: 568 LFKEMVSSGV-SPNIITYNIILQGLFHTRRTAAAKEL-YVGITKSGTQLELSTYNIILHG 625

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L +    +EA  +F  +    +  ++ T+ I+I  L +  + DEAK  +  +     + D
Sbjct: 626 LCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPD 685

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463
              Y+ M + L   G + E       + ++G T N    N ++
Sbjct: 686 VRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIV 728



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 91/329 (27%), Positives = 159/329 (48%), Gaps = 6/329 (1%)

Query: 170 LTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKAR 229
           +TP++ +Y  ++   C+ G     +  L   ++ G+     T+  L++GLC +     A 
Sbjct: 83  VTPTVHTYGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAM 142

Query: 230 K-VLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQ---CQPDVITLNTV 285
             VL+ M     +     C I L+ LC      E L +L  M   +     PDV++  TV
Sbjct: 143 DIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTV 202

Query: 286 INGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQR 345
           INGF K G  ++A    ++M+  +  +PD VT+++II  L     + +A+ +L   M + 
Sbjct: 203 INGFFKEGDSDKAYSTYHEMLDRRI-SPDVVTYSSIIAALCKGQAMDKAMEVL-TTMVKN 260

Query: 346 GYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA 405
           G  P  +TYN++L G     + +EA      M   GV  D  TY  ++D LC++ +  EA
Sbjct: 261 GVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEA 320

Query: 406 KRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDG 465
           ++ +D +       D   Y  +++G    G + E    L  +V +G+ P+   +N++I  
Sbjct: 321 RKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICA 380

Query: 466 ACKLSMKREAYQILREMRKNGLNPDAVTW 494
             K     EA  +  +MR++GLNP+ VT+
Sbjct: 381 YAKQEKVDEAMLVFSKMRQHGLNPNVVTY 409



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 116/230 (50%), Gaps = 2/230 (0%)

Query: 278 DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNL 337
           + IT   ++ G C   R  +A+ ++   +    C PD  + T ++ GL +  R QEAL L
Sbjct: 121 EAITFTPLLKGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALEL 180

Query: 338 LYQVMPQRG--YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG 395
           L+ +   RG   +P +V+Y  V+ G F+    ++A   ++ ML   +  D  TY+ +I  
Sbjct: 181 LHMMADDRGGGSAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAA 240

Query: 396 LCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN 455
           LC+   +D+A      +V    + +   Y +++ G C S +  EA+ FL ++   GV P+
Sbjct: 241 LCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPD 300

Query: 456 IVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
           +V YN ++D  CK     EA +I   M K GL PD  T+  L + +  +G
Sbjct: 301 VVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKG 350


>gi|356522596|ref|XP_003529932.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Glycine max]
          Length = 827

 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 141/525 (26%), Positives = 246/525 (46%), Gaps = 41/525 (7%)

Query: 7   LSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLT 66
           L   GEA +L  +M       NV   T+LI GYC  G+++ A ++FDE+   GV PN   
Sbjct: 305 LGNFGEALRLKDEMVDSRVPVNVAVATSLIKGYCVRGDVNSALRLFDEVVEVGVTPNVAI 364

Query: 67  YSVLVRGVLRTRDVERANVLMFKLWERMK------------------EEEDLSVN----- 103
           +SVL+    +  +VE+AN    +L+ RMK                   +++L  N     
Sbjct: 365 FSVLIEWCSKIGNVEKAN----ELYTRMKCMGLQPTVFILNFLLKGFRKQNLLENAYLLL 420

Query: 104 NAAFANLVDS----------LCREGYVNEVFRIAEDMPQGKSVNEEFAC-GHMIDSLCRS 152
           + A  N + S          LC  G VNE   + + M  GK +        HMI   C+ 
Sbjct: 421 DGAVENGIASVVTYNIVLLWLCELGKVNEACNLWDKM-IGKGITPSLVSYNHMILGHCKK 479

Query: 153 GRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTY 212
           G    A  V+  + + GL P+ ++Y  ++ G  K G C  A+ + ++ +  G +P+++T+
Sbjct: 480 GCMDDAHEVMNGIIESGLKPNAITYTILMEGSFKKGDCEHAFNMFDQMVAAGIVPTDYTF 539

Query: 213 KVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQ 272
             ++ GLC    + +AR  L   + +  +  +   N  +             +V   M +
Sbjct: 540 NSIINGLCKVGRVSEARDKLNTFIKQSFIPTSMTYNCIIDGYVKEGAIDSAESVYREMCR 599

Query: 273 TQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQ 332
           ++  P+VIT  ++INGFCK  +++ ALK+ +DM   K    D   + T+I G   +  ++
Sbjct: 600 SEISPNVITYTSLINGFCKSNKMDLALKMHDDM-KRKGLELDITVYATLIAGFCKMQDME 658

Query: 333 EALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIV 392
            A     +++ + G +P  + YN ++     L  +E A  +   M+   +  D   Y  +
Sbjct: 659 NACKFFSKLL-EVGLTPNTIVYNIMISAYRNLNNMEAALNLHKEMINNKIPCDLKIYTSL 717

Query: 393 IDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGV 452
           IDGL +  +L  A   + +++    + D ++Y  +I GLC  G++  A   L E+  + +
Sbjct: 718 IDGLLKEGKLSFALDLYSEMLCRGIVPDIFMYNVLINGLCNHGQLENAGKILKEMDGNNI 777

Query: 453 TPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           TP ++ YN +I G  K    +EA+++  EM   GL PD  T+ IL
Sbjct: 778 TPTVLLYNTLIAGHFKEGNLQEAFRLHDEMLDKGLVPDDTTYDIL 822



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 123/479 (25%), Positives = 220/479 (45%), Gaps = 8/479 (1%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           EA + F     RG   +  SY+ +I   CR  ++D+A K+ +     G +P+  TY+ ++
Sbjct: 240 EAERYFGQAAGRGLKLDAASYSIVIQAVCRGSDLDLASKLVEGDEELGWVPSEGTYAAVI 299

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP 131
              +R  +   A     +L + M +   + VN A   +L+   C  G VN   R+ +++ 
Sbjct: 300 GACVRLGNFGEA----LRLKDEMVDSR-VPVNVAVATSLIKGYCVRGDVNSALRLFDEVV 354

Query: 132 QGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCM 191
           +            +I+   + G    A+ +   M+  GL P++   N ++ G  K     
Sbjct: 355 EVGVTPNVAIFSVLIEWCSKIGNVEKANELYTRMKCMGLQPTVFILNFLLKGFRKQNLLE 414

Query: 192 RAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYL 251
            AY LL+  ++ G + S  TY +++  LC    + +A  +   M+ K         N  +
Sbjct: 415 NAYLLLDGAVENG-IASVVTYNIVLLWLCELGKVNEACNLWDKMIGKGITPSLVSYNHMI 473

Query: 252 RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC 311
              C      +   V+  ++++  +P+ IT   ++ G  K G  E A  + + MVA    
Sbjct: 474 LGHCKKGCMDDAHEVMNGIIESGLKPNAITYTILMEGSFKKGDCEHAFNMFDQMVAAGI- 532

Query: 312 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK 371
            P   TF +II GL  VGR+ EA + L   + Q  + P  +TYN ++ G  +   ++ A+
Sbjct: 533 VPTDYTFNSIINGLCKVGRVSEARDKLNTFIKQ-SFIPTSMTYNCIIDGYVKEGAIDSAE 591

Query: 372 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 431
            V+  M    +  +  TY  +I+G C+SN++D A +  DD+       D  VYA +I G 
Sbjct: 592 SVYREMCRSEISPNVITYTSLINGFCKSNKMDLALKMHDDMKRKGLELDITVYATLIAGF 651

Query: 432 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD 490
           C+   +  A  F  +L++ G+TPN + YN++I     L+    A  + +EM  N +  D
Sbjct: 652 CKMQDMENACKFFSKLLEVGLTPNTIVYNIMISAYRNLNNMEAALNLHKEMINNKIPCD 710



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 105/392 (26%), Positives = 196/392 (50%), Gaps = 7/392 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC L +V EA  L+  M  +G  P++VSY  +I G+C+ G MD A++V + +   G+ PN
Sbjct: 441 LCELGKVNEACNLWDKMIGKGITPSLVSYNHMILGHCKKGCMDDAHEVMNGIIESGLKPN 500

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           ++TY++L+ G  +  D E A    F ++++M     +   +  F ++++ LC+ G V+E 
Sbjct: 501 AITYTILMEGSFKKGDCEHA----FNMFDQMV-AAGIVPTDYTFNSIINGLCKVGRVSEA 555

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
                   +   +        +ID   + G    A  V   M +  ++P++++Y S+++G
Sbjct: 556 RDKLNTFIKQSFIPTSMTYNCIIDGYVKEGAIDSAESVYREMCRSEISPNVITYTSLING 615

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK      A ++ ++  + G       Y  L+ G C   D+E A K    +L       
Sbjct: 616 FCKSNKMDLALKMHDDMKRKGLELDITVYATLIAGFCKMQDMENACKFFSKLLEVGLTPN 675

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
           T + NI + A   + N    LN+   M+  +   D+    ++I+G  K G++  AL + +
Sbjct: 676 TIVYNIMISAYRNLNNMEAALNLHKEMINNKIPCDLKIYTSLIDGLLKEGKLSFALDLYS 735

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           +M+  +   PD   +  +I GL N G+++ A  +L + M     +P ++ YN ++ G F+
Sbjct: 736 EMLC-RGIVPDIFMYNVLINGLCNHGQLENAGKILKE-MDGNNITPTVLLYNTLIAGHFK 793

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG 395
              ++EA  + + ML  G+V D TTY I+++G
Sbjct: 794 EGNLQEAFRLHDEMLDKGLVPDDTTYDILVNG 825



 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 118/498 (23%), Positives = 231/498 (46%), Gaps = 10/498 (2%)

Query: 10  VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSV 69
           V +AH+LF +M  R    +  +   L+    + G+   A + F +    G+  ++ +YS+
Sbjct: 203 VEDAHRLFDEMAERRIYGDCYTLQVLMRACLKGGKFVEAERYFGQAAGRGLKLDAASYSI 262

Query: 70  LVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAED 129
           +++ V R  D++ A+ L+        EE     +   +A ++ +  R G   E  R+ ++
Sbjct: 263 VIQAVCRGSDLDLASKLV-----EGDEELGWVPSEGTYAAVIGACVRLGNFGEALRLKDE 317

Query: 130 MPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG 189
           M   +          +I   C  G  + A R+   + + G+TP++  ++ ++    K G 
Sbjct: 318 MVDSRVPVNVAVATSLIKGYCVRGDVNSALRLFDEVVEVGVTPNVAIFSVLIEWCSKIGN 377

Query: 190 CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNI 249
             +A +L       G  P+      L++G   ++ LE A  +L   + +  +      NI
Sbjct: 378 VEKANELYTRMKCMGLQPTVFILNFLLKGFRKQNLLENAYLLLDGAV-ENGIASVVTYNI 436

Query: 250 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK 309
            L  LC +    E  N+   M+     P +++ N +I G CK G +++A +V+N ++   
Sbjct: 437 VLLWLCELGKVNEACNLWDKMIGKGITPSLVSYNHMILGHCKKGCMDDAHEVMNGIIESG 496

Query: 310 FCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEE 369
              P+A+T+T ++ G    G  + A N+  Q M   G  P   T+N+++ GL ++ RV E
Sbjct: 497 L-KPNAITYTILMEGSFKKGDCEHAFNMFDQ-MVAAGIVPTDYTFNSIINGLCKVGRVSE 554

Query: 370 AKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV-YAAMI 428
           A++  N  +    +  S TY  +IDG  +   +D A+  + ++   S I  N + Y ++I
Sbjct: 555 ARDKLNTFIKQSFIPTSMTYNCIIDGYVKEGAIDSAESVYREMCR-SEISPNVITYTSLI 613

Query: 429 KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLN 488
            G C+S K+  A+    ++   G+  +I  Y  +I G CK+     A +   ++ + GL 
Sbjct: 614 NGFCKSNKMDLALKMHDDMKRKGLELDITVYATLIAGFCKMQDMENACKFFSKLLEVGLT 673

Query: 489 PDAVTWRILDKLHGNRGN 506
           P+ + + I+   + N  N
Sbjct: 674 PNTIVYNIMISAYRNLNN 691



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 115/490 (23%), Positives = 218/490 (44%), Gaps = 43/490 (8%)

Query: 8   SRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTY 67
           +++ EA + F  M   G VP V     L+    R   ++ A+++FDEM    +  +  T 
Sbjct: 166 NKITEAVECFRAMLEDGVVPWVPFVNVLLTAMIRRNMVEDAHRLFDEMAERRIYGDCYTL 225

Query: 68  SVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIA 127
            VL+R  L+      A     +   R      L ++ A+++ ++ ++CR   ++   ++ 
Sbjct: 226 QVLMRACLKGGKFVEAERYFGQAAGR-----GLKLDAASYSIVIQAVCRGSDLDLASKLV 280

Query: 128 EDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKH 187
           E   +   V  E     +I +  R G    A R+   M    +  ++    S++ G C  
Sbjct: 281 EGDEELGWVPSEGTYAAVIGACVRLGNFGEALRLKDEMVDSRVPVNVAVATSLIKGYCVR 340

Query: 188 GGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC 247
           G    A +L +E ++ G  P+   + VL+E      ++EKA +                 
Sbjct: 341 GDVNSALRLFDEVVEVGVTPNVAIFSVLIEWCSKIGNVEKANE----------------- 383

Query: 248 NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA 307
            +Y R  C+                   QP V  LN ++ GF K   +E A  +L+  V 
Sbjct: 384 -LYTRMKCM-----------------GLQPTVFILNFLLKGFRKQNLLENAYLLLDGAVE 425

Query: 308 GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRV 367
               +   VT+  ++  L  +G++ EA NL +  M  +G +P +V+YN ++ G  +   +
Sbjct: 426 NGIAS--VVTYNIVLLWLCELGKVNEACNL-WDKMIGKGITPSLVSYNHMILGHCKKGCM 482

Query: 368 EEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAM 427
           ++A EV N ++  G+  ++ TY I+++G  +    + A   +D +V    +  +Y + ++
Sbjct: 483 DDAHEVMNGIIESGLKPNAITYTILMEGSFKKGDCEHAFNMFDQMVAAGIVPTDYTFNSI 542

Query: 428 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
           I GLC+ G++ EA   L   +     P  + YN +IDG  K      A  + REM ++ +
Sbjct: 543 INGLCKVGRVSEARDKLNTFIKQSFIPTSMTYNCIIDGYVKEGAIDSAESVYREMCRSEI 602

Query: 488 NPDAVTWRIL 497
           +P+ +T+  L
Sbjct: 603 SPNVITYTSL 612



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 64/259 (24%), Positives = 113/259 (43%), Gaps = 8/259 (3%)

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
           +R+ N  L +       TE +     ML+    P V  +N ++    +   +E+A ++ +
Sbjct: 152 SRVFNYLLISYVRANKITEAVECFRAMLEDGVVPWVPFVNVLLTAMIRRNMVEDAHRLFD 211

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           +M   +    D  T   ++   L  G+  EA     Q    RG      +Y+ V++ + R
Sbjct: 212 EMAERRIYG-DCYTLQVLMRACLKGGKFVEAERYFGQA-AGRGLKLDAASYSIVIQAVCR 269

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV---WPSNIHD 420
              ++ A ++      +G V    TYA VI          EA R  D++V    P N+  
Sbjct: 270 GSDLDLASKLVEGDEELGWVPSEGTYAAVIGACVRLGNFGEALRLKDEMVDSRVPVNVA- 328

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
             V  ++IKG C  G ++ A+    E+V+ GVTPN+  ++V+I+   K+    +A ++  
Sbjct: 329 --VATSLIKGYCVRGDVNSALRLFDEVVEVGVTPNVAIFSVLIEWCSKIGNVEKANELYT 386

Query: 481 EMRKNGLNPDAVTWRILDK 499
            M+  GL P       L K
Sbjct: 387 RMKCMGLQPTVFILNFLLK 405



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/232 (22%), Positives = 98/232 (42%), Gaps = 8/232 (3%)

Query: 278 DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNL 337
           D    N ++  + +  +I EA++    M+         V F  ++   +    + E  + 
Sbjct: 151 DSRVFNYLLISYVRANKITEAVECFRAMLEDGVVP--WVPFVNVLLTAMIRRNMVEDAHR 208

Query: 338 LYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLC 397
           L+  M +R       T   ++R   +  +  EA+  F    G G+  D+ +Y+IVI  +C
Sbjct: 209 LFDEMAERRIYGDCYTLQVLMRACLKGGKFVEAERYFGQAAGRGLKLDAASYSIVIQAVC 268

Query: 398 ESNQLDEAKRFWD---DIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTP 454
             + LD A +  +   ++ W   +     YAA+I    R G   EA+    E+VDS V  
Sbjct: 269 RGSDLDLASKLVEGDEELGW---VPSEGTYAAVIGACVRLGNFGEALRLKDEMVDSRVPV 325

Query: 455 NIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           N+     +I G C       A ++  E+ + G+ P+   + +L +     GN
Sbjct: 326 NVAVATSLIKGYCVRGDVNSALRLFDEVVEVGVTPNVAIFSVLIEWCSKIGN 377



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 42/75 (56%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   ++  A K+  +M      P V+ Y TLI G+ + G +  A+++ DEM   G+
Sbjct: 753 INGLCNHGQLENAGKILKEMDGNNITPTVLLYNTLIAGHFKEGNLQEAFRLHDEMLDKGL 812

Query: 61  LPNSLTYSVLVRGVL 75
           +P+  TY +LV G L
Sbjct: 813 VPDDTTYDILVNGKL 827



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 4/94 (4%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D L    ++  A  L+ +M  RG VP++  Y  LI+G C  G+++ A K+  EM    +
Sbjct: 718 IDGLLKEGKLSFALDLYSEMLCRGIVPDIFMYNVLINGLCNHGQLENAGKILKEMDGNNI 777

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERM 94
            P  L Y+ L+ G  +  +++ A    F+L + M
Sbjct: 778 TPTVLLYNTLIAGHFKEGNLQEA----FRLHDEM 807


>gi|300681579|emb|CBI75523.1| PPR repeat domain containing protein [Triticum aestivum]
          Length = 728

 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 134/487 (27%), Positives = 226/487 (46%), Gaps = 44/487 (9%)

Query: 13  AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHC--GVLPNSLTYSVL 70
           A  LF DMKS G  PNV SY+ L+  Y    ++ +   +         GV PN+ TY+  
Sbjct: 195 ARSLFDDMKSSGPSPNVYSYSVLMSMYTHGAKLCLEEALELLSEMEVEGVRPNAATYATY 254

Query: 71  VRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDM 130
           + G+   + V+ A   +  L +R         NN  F  ++   C +G V++   + + M
Sbjct: 255 LYGLCHAKQVKSAWNFLQMLCQR-----GYPCNNYCFNAVIHGFCHDGQVHKAIEVFDGM 309

Query: 131 PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGC 190
            +   V +  +   ++D LC+ G       ++  M + G+TP+LVSY+S++HGLC+ G  
Sbjct: 310 KKCGFVPDVHSYSILVDGLCKQGDVLTGYYMLVEMARNGITPNLVSYSSLLHGLCRAGRV 369

Query: 191 MRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIY 250
             A++L +     G+      Y +++ G C   DLE                   IC   
Sbjct: 370 ELAFELFKRLKDQGFKHDHIVYSIVLHGCCQHLDLE-------------------IC--- 407

Query: 251 LRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKF 310
                      +L N    M+     PD    +++I  +C+  +++EAL+V   MV+   
Sbjct: 408 ----------YDLWND---MVHHNFVPDAYNYSSLIYAYCRHRQLKEALEVFELMVSDGI 454

Query: 311 CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEA 370
           C P+ VT T ++ G  N G I EA   L +V  Q G  P + TY  ++ GL ++ +  + 
Sbjct: 455 C-PNVVTCTILVHGFSNEGLIGEAFLFLDKVR-QFGVVPSLCTYRVIIHGLCKVNKPNDM 512

Query: 371 KEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKG 430
             +F  M+  G V D+  Y+I+IDG  ++  L EA R +  +V      + + Y ++I G
Sbjct: 513 WGIFADMIKRGYVPDTVLYSIIIDGFVKALDLQEAFRLYYKMVDEGTKPNIFTYTSLING 572

Query: 431 LCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD 490
           LC   K+ E +     ++  G+ P+ + Y  +I   CK S  + A +I REM   GL+ D
Sbjct: 573 LCHDDKLPEVMTLFKHMIGEGLAPDRILYTSLIACYCKRSNMKAALEIFREMETEGLSAD 632

Query: 491 AVTWRIL 497
           +  +  L
Sbjct: 633 SFVYTCL 639



 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 124/506 (24%), Positives = 223/506 (44%), Gaps = 44/506 (8%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   +V  A      +  RG+  N   +  +IHG+C  G++  A +VFD M+ CG +P+
Sbjct: 258 LCHAKQVKSAWNFLQMLCQRGYPCNNYCFNAVIHGFCHDGQVHKAIEVFDGMKKCGFVPD 317

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             +YS+LV G+ +  DV     ++ ++         ++ N  ++++L+  LCR G V   
Sbjct: 318 VHSYSILVDGLCKQGDVLTGYYMLVEM-----ARNGITPNLVSYSSLLHGLCRAGRVELA 372

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           F + +                                    ++ +G     + Y+ ++HG
Sbjct: 373 FELFKR-----------------------------------LKDQGFKHDHIVYSIVLHG 397

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            C+H      Y L  + +   ++P  + Y  L+   C    L++A +V + M+S      
Sbjct: 398 CCQHLDLEICYDLWNDMVHHNFVPDAYNYSSLIYAYCRHRQLKEALEVFELMVSDGICPN 457

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
              C I +          E    L  + Q    P + T   +I+G CK+ +  +   +  
Sbjct: 458 VVTCTILVHGFSNEGLIGEAFLFLDKVRQFGVVPSLCTYRVIIHGLCKVNKPNDMWGIFA 517

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           DM+   +  PD V ++ II G +    +QEA  L Y+ M   G  P I TY +++ GL  
Sbjct: 518 DMIKRGY-VPDTVLYSIIIDGFVKALDLQEAFRLYYK-MVDEGTKPNIFTYTSLINGLCH 575

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
             ++ E   +F  M+G G+  D   Y  +I   C+ + +  A   + ++       D++V
Sbjct: 576 DDKLPEVMTLFKHMIGEGLAPDRILYTSLIACYCKRSNMKAALEIFREMETEGLSADSFV 635

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y  +I G  +   +  A  F+ E+++ G+TP +V Y  +I G  K+  +++A  +   M 
Sbjct: 636 YTCLIGGFSKVLAMDGAQLFMEEMMNKGLTPTVVTYTDLIVGYFKIGDEKKAMAMYNSML 695

Query: 484 KNGLNPDAVTWRILDKLHGNRGNDFG 509
           + G+ PDA    IL    GN G+DFG
Sbjct: 696 QAGIAPDAKLSCILGL--GNDGHDFG 719



 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 101/397 (25%), Positives = 187/397 (47%), Gaps = 17/397 (4%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    V   + +  +M   G  PN+VSY++L+HG CR G +++A+++F  ++  G 
Sbjct: 325 VDGLCKQGDVLTGYYMLVEMARNGITPNLVSYSSLLHGLCRAGRVELAFELFKRLKDQGF 384

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             + + YS+++ G  +  D+E    + + LW  M    +   +   +++L+ + CR   +
Sbjct: 385 KHDHIVYSIVLHGCCQHLDLE----ICYDLWNDMV-HHNFVPDAYNYSSLIYAYCRHRQL 439

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E   + E M           C  ++      G    A   +  +R+ G+ PSL +Y  I
Sbjct: 440 KEALEVFELMVSDGICPNVVTCTILVHGFSNEGLIGEAFLFLDKVRQFGVVPSLCTYRVI 499

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +HGLCK       + +  + I+ GY+P    Y ++++G     DL++A     F L  K 
Sbjct: 500 IHGLCKVNKPNDMWGIFADMIKRGYVPDTVLYSIIIDGFVKALDLQEA-----FRLYYKM 554

Query: 241 VDRTRICNIY-----LRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 295
           VD     NI+     +  LC      E++ +   M+     PD I   ++I  +CK   +
Sbjct: 555 VDEGTKPNIFTYTSLINGLCHDDKLPEVMTLFKHMIGEGLAPDRILYTSLIACYCKRSNM 614

Query: 296 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN 355
           + AL++  +M      A D+  +T +I G   V  +  A  L  + M  +G +P +VTY 
Sbjct: 615 KAALEIFREMETEGLSA-DSFVYTCLIGGFSKVLAMDGA-QLFMEEMMNKGLTPTVVTYT 672

Query: 356 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIV 392
            ++ G F++   ++A  ++N ML  G+  D+    I+
Sbjct: 673 DLIVGYFKIGDEKKAMAMYNSMLQAGIAPDAKLSCIL 709



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 78/262 (29%), Positives = 135/262 (51%), Gaps = 8/262 (3%)

Query: 250 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK 309
           YL  LC  K      N L  + Q     +    N VI+GFC  G++ +A++V + M    
Sbjct: 254 YLYGLCHAKQVKSAWNFLQMLCQRGYPCNNYCFNAVIHGFCHDGQVHKAIEVFDGMKKCG 313

Query: 310 FCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEE 369
           F  PD  +++ ++ GL   G +     +L + M + G +P +V+Y+++L GL R  RVE 
Sbjct: 314 F-VPDVHSYSILVDGLCKQGDVLTGYYMLVE-MARNGITPNLVSYSSLLHGLCRAGRVEL 371

Query: 370 AKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIK 429
           A E+F  +   G   D   Y+IV+ G C+   L+     W+D+V  + + D Y Y+++I 
Sbjct: 372 AFELFKRLKDQGFKHDHIVYSIVLHGCCQHLDLEICYDLWNDMVHHNFVPDAYNYSSLIY 431

Query: 430 GLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNP 489
             CR  ++ EA+     +V  G+ PN+V   +++ G     +  EA+  L ++R+ G+ P
Sbjct: 432 AYCRHRQLKEALEVFELMVSDGICPNVVTCTILVHGFSNEGLIGEAFLFLDKVRQFGVVP 491

Query: 490 DAVTWRILDKLHG----NRGND 507
              T+R++  +HG    N+ ND
Sbjct: 492 SLCTYRVI--IHGLCKVNKPND 511


>gi|168014206|ref|XP_001759643.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162689182|gb|EDQ75555.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1043

 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 135/510 (26%), Positives = 246/510 (48%), Gaps = 46/510 (9%)

Query: 1    MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
            +D L    R+ EA  L  +M+ +G  P+VV+Y++L+  + +  + + +  +FDEM   G 
Sbjct: 570  VDGLGKAGRLDEAVSLLREMEKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEMVRKGC 629

Query: 61   LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEE--EDLSVNNAAFANLVDSLCREG 118
            + +  TYS+++  + ++ DV++A      ++ RMKEE  E L  N   +  L+ SL ++ 
Sbjct: 630  VADVSTYSLVINCLCKSDDVDQA----LDVFGRMKEEGMEPLLGN---YKTLLSSLVKDE 682

Query: 119  YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
             ++   +I  ++ +   V + F    M++ L +S R   A ++V  M+ + + P L +Y 
Sbjct: 683  KIDFALQIFNELQESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNILPDLFTYT 742

Query: 179  SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
            S++ GL K G    A+ +  +  + G+ P    Y  L++ L     L  A  + + M  K
Sbjct: 743  SLLDGLGKSGRLEEAFNMFTKMTEEGHEPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKK 802

Query: 239  KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
            +                                   C PDV+T +++I+   K GR+EEA
Sbjct: 803  R-----------------------------------CVPDVVTYSSLIDSLGKEGRVEEA 827

Query: 299  LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
                 + ++ K C P+   ++++I      G +  AL L ++ M +R   P IVTYN +L
Sbjct: 828  YYFFENSIS-KGCTPNVGVYSSLIDSFGKKGMVDRALEL-FEEMQRRQCPPNIVTYNNLL 885

Query: 359  RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
             GL +  R+  A+++   M  +G V D  TY I+IDG+ +   +DEA+ ++  +     +
Sbjct: 886  SGLAKAGRLNVAEKLLEEMEKVGCVPDLVTYNILIDGVGKMGMVDEAESYFKRMKEKGIV 945

Query: 419  HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI 478
             D   + ++I+ L +  K+ EA      + + G  P++V YNV+ID   +     EA  I
Sbjct: 946  PDVITFTSLIESLGKVDKLLEACELFDSMEEEGYNPSVVTYNVLIDILGRAGKVHEAAMI 1005

Query: 479  LREMRKNGLNPDAVTWRILDKLHGNRGNDF 508
              EM+  G  PD +T  I+ ++   R   F
Sbjct: 1006 FHEMKVKGCMPDGITIGIMKRILSVREQQF 1035



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 132/515 (25%), Positives = 247/515 (47%), Gaps = 48/515 (9%)

Query: 27  PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVL 86
           P+  ++   +H + R+G +D A +   EM   G+ P   T++VL+  ++++ +++ A   
Sbjct: 285 PDAQTFRIFVHSFNRSGRLDPAAEPIQEMIKSGIDPGVHTFTVLIDALVKSGNIDEA--- 341

Query: 87  MFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMI 146
             K +  MK     S N   +  LV+ L + G + E   +  +M +     +  A   +I
Sbjct: 342 -CKFFNGMKNLR-CSPNVVTYTTLVNGLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLI 399

Query: 147 DSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL 206
           D L ++G    A  +   M+ RGL P+L +YN ++  L K G    A+QL  +  + G +
Sbjct: 400 DGLGKAGEADMACGLFKEMKDRGLVPNLRTYNIMISVLGKAGRQPEAWQLFHDLKEQGAV 459

Query: 207 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSK-KDVDRTRICNIYLRALCLIKNPTELLN 265
           P   TY  L++ L     ++K   +++ M+ K  +   +R  N          + T    
Sbjct: 460 PDVFTYNTLIDVLGKGGQMDKVLAIIKEMVEKGGECIISRDSNAGHEGTIEGADRTVEYP 519

Query: 266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 325
            L F    +     IT NT+++ F   G ++EA+K+L  M   + C P  VT+TT++ GL
Sbjct: 520 SLGFKSLGE-----ITYNTLMSAFIHNGHVDEAVKLLEVMKKHE-CIPTVVTYTTLVDGL 573

Query: 326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 385
              GR+ EA++LL + M ++G  P +VTY++++   ++  + EE+  +F+ M+  G VAD
Sbjct: 574 GKAGRLDEAVSLLRE-MEKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEMVRKGCVAD 632

Query: 386 STTYAIVIDGLCESNQLDE-----------------------------------AKRFWD 410
            +TY++VI+ LC+S+ +D+                                   A + ++
Sbjct: 633 VSTYSLVINCLCKSDDVDQALDVFGRMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFN 692

Query: 411 DIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLS 470
           ++   S + D +VY  M+ GL +S ++ EA   +  + +  + P++  Y  ++DG  K  
Sbjct: 693 ELQESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNILPDLFTYTSLLDGLGKSG 752

Query: 471 MKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
              EA+ +  +M + G  PD V +  L  + G  G
Sbjct: 753 RLEEAFNMFTKMTEEGHEPDVVAYTSLMDVLGKGG 787



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 144/561 (25%), Positives = 257/561 (45%), Gaps = 76/561 (13%)

Query: 6   GLSRVG---EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           GL++ G   EA ++F +MK     P+ ++Y TLI G  + GE D+A  +F EM+  G++P
Sbjct: 366 GLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLIDGLGKAGEADMACGLFKEMKDRGLVP 425

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           N  TY++++  + +      A    ++L+  +KE+  +  +   +  L+D L + G +++
Sbjct: 426 NLRTYNIMISVLGKAGRQPEA----WQLFHDLKEQGAVP-DVFTYNTLIDVLGKGGQMDK 480

Query: 123 VFRIAEDMPQGKS---VNEEFACGH----------------------------MIDSLCR 151
           V  I ++M +      ++ +   GH                            ++ +   
Sbjct: 481 VLAIIKEMVEKGGECIISRDSNAGHEGTIEGADRTVEYPSLGFKSLGEITYNTLMSAFIH 540

Query: 152 SGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHT 211
           +G    A +++ VM+K    P++V+Y ++V GL K G    A  LL E  + G  PS  T
Sbjct: 541 NGHVDEAVKLLEVMKKHECIPTVVTYTTLVDGLGKAGRLDEAVSLLREMEKQGCEPSVVT 600

Query: 212 YKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALC---------------- 255
           Y  L+         E++  +   M+ K  V      ++ +  LC                
Sbjct: 601 YSSLMASFYKRDQEEESLSLFDEMVRKGCVADVSTYSLVINCLCKSDDVDQALDVFGRMK 660

Query: 256 ------LIKNPTELLNVLV------FMLQ-------TQCQPDVITLNTVINGFCKMGRIE 296
                 L+ N   LL+ LV      F LQ       +   PD    N ++NG  K  R++
Sbjct: 661 EEGMEPLLGNYKTLLSSLVKDEKIDFALQIFNELQESSLVPDTFVYNIMVNGLVKSNRVD 720

Query: 297 EALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
           EA K+++ M   +   PD  T+T+++ GL   GR++EA N+  + M + G+ P +V Y +
Sbjct: 721 EACKLVDSM-KNQNILPDLFTYTSLLDGLGKSGRLEEAFNMFTK-MTEEGHEPDVVAYTS 778

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416
           ++  L +  ++  A  +F  M     V D  TY+ +ID L +  +++EA  F+++ +   
Sbjct: 779 LMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFENSISKG 838

Query: 417 NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAY 476
              +  VY+++I    + G +  A+    E+      PNIV YN ++ G  K      A 
Sbjct: 839 CTPNVGVYSSLIDSFGKKGMVDRALELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLNVAE 898

Query: 477 QILREMRKNGLNPDAVTWRIL 497
           ++L EM K G  PD VT+ IL
Sbjct: 899 KLLEEMEKVGCVPDLVTYNIL 919



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 128/506 (25%), Positives = 244/506 (48%), Gaps = 13/506 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D L     + EA K F  MK+    PNVV+YTTL++G  + G ++ A +VF EM+    
Sbjct: 329 IDALVKSGNIDEACKFFNGMKNLRCSPNVVTYTTLVNGLAKAGRLEEACEVFVEMKENNC 388

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+++ Y+ L+ G+ +  + + A  L  ++ +R      L  N   +  ++  L + G  
Sbjct: 389 SPDAIAYNTLIDGLGKAGEADMACGLFKEMKDR-----GLVPNLRTYNIMISVLGKAGRQ 443

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E +++  D+ +  +V + F    +ID L + G+      ++  M ++G    ++S +S 
Sbjct: 444 PEAWQLFHDLKEQGAVPDVFTYNTLIDVLGKGGQMDKVLAIIKEMVEKG-GECIISRDSN 502

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLP-SEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
                 H G +       E    G+    E TY  L+        +++A K+L+ M   +
Sbjct: 503 ----AGHEGTIEGADRTVEYPSLGFKSLGEITYNTLMSAFIHNGHVDEAVKLLEVMKKHE 558

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
            +         +  L       E +++L  M +  C+P V+T ++++  F K  + EE+L
Sbjct: 559 CIPTVVTYTTLVDGLGKAGRLDEAVSLLREMEKQGCEPSVVTYSSLMASFYKRDQEEESL 618

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
            + ++MV  K C  D  T++ +I  L     + +AL+ ++  M + G  P +  Y  +L 
Sbjct: 619 SLFDEMVR-KGCVADVSTYSLVINCLCKSDDVDQALD-VFGRMKEEGMEPLLGNYKTLLS 676

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
            L +  +++ A ++FN +    +V D+  Y I+++GL +SN++DEA +  D +   + + 
Sbjct: 677 SLVKDEKIDFALQIFNELQESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNILP 736

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           D + Y +++ GL +SG++ EA +   ++ + G  P++V Y  ++D   K      A  I 
Sbjct: 737 DLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEGHEPDVVAYTSLMDVLGKGGKLSHALIIF 796

Query: 480 REMRKNGLNPDAVTWRILDKLHGNRG 505
           R M K    PD VT+  L    G  G
Sbjct: 797 RAMAKKRCVPDVVTYSSLIDSLGKEG 822



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 106/389 (27%), Positives = 164/389 (42%), Gaps = 37/389 (9%)

Query: 144 HMIDSLCRS-GRNH---GASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
           H++ SL R+ G  +   GA  +   M+  G  PS   YN ++  L K G    A  +  +
Sbjct: 218 HLLTSLLRTFGSTNNVSGALEIFNQMKSFGCNPSTNMYNFVLELLVKGGFYHSAVIVFGK 277

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
             QF   P   T+++ V        L+ A + +Q M+            + + AL    N
Sbjct: 278 LGQFRIQPDAQTFRIFVHSFNRSGRLDPAAEPIQEMIKSGIDPGVHTFTVLIDALVKSGN 337

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
             E       M   +C P+V+T  T++NG  K GR+EEA +V  +M     C+PDA+ + 
Sbjct: 338 IDEACKFFNGMKNLRCSPNVVTYTTLVNGLAKAGRLEEACEVFVEMKENN-CSPDAIAYN 396

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
           T+I GL   G    A   L++ M  RG  P + TYN ++  L +  R  EA ++F+ +  
Sbjct: 397 TLIDGLGKAGEADMACG-LFKEMKDRGLVPNLRTYNIMISVLGKAGRQPEAWQLFHDLKE 455

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV-------------------------- 413
            G V D  TY  +ID L +  Q+D+      ++V                          
Sbjct: 456 QGAVPDVFTYNTLIDVLGKGGQMDKVLAIIKEMVEKGGECIISRDSNAGHEGTIEGADRT 515

Query: 414 --WPS---NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACK 468
             +PS          Y  ++     +G + EAV  L  +      P +V Y  ++DG  K
Sbjct: 516 VEYPSLGFKSLGEITYNTLMSAFIHNGHVDEAVKLLEVMKKHECIPTVVTYTTLVDGLGK 575

Query: 469 LSMKREAYQILREMRKNGLNPDAVTWRIL 497
                EA  +LREM K G  P  VT+  L
Sbjct: 576 AGRLDEAVSLLREMEKQGCEPSVVTYSSL 604



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 78/308 (25%), Positives = 138/308 (44%), Gaps = 4/308 (1%)

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
           G Q GY  +  TY ++++ L G  + +   ++L  M  +       +    LR      N
Sbjct: 173 GQQDGYSHTVGTYTLMIKRLAGAQETDAVVQILTAMWKEGHRISMHLLTSLLRTFGSTNN 232

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKF-CAPDAVTF 318
            +  L +   M    C P     N V+    K G    A+ V   +  G+F   PDA TF
Sbjct: 233 VSGALEIFNQMKSFGCNPSTNMYNFVLELLVKGGFYHSAVIVFGKL--GQFRIQPDAQTF 290

Query: 319 TTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCML 378
              +      GR+  A   + Q M + G  PG+ T+  ++  L +   ++EA + FN M 
Sbjct: 291 RIFVHSFNRSGRLDPAAEPI-QEMIKSGIDPGVHTFTVLIDALVKSGNIDEACKFFNGMK 349

Query: 379 GIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIH 438
            +    +  TY  +++GL ++ +L+EA   + ++   +   D   Y  +I GL ++G+  
Sbjct: 350 NLRCSPNVVTYTTLVNGLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLIDGLGKAGEAD 409

Query: 439 EAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILD 498
            A     E+ D G+ PN+  YN++I    K   + EA+Q+  ++++ G  PD  T+  L 
Sbjct: 410 MACGLFKEMKDRGLVPNLRTYNIMISVLGKAGRQPEAWQLFHDLKEQGAVPDVFTYNTLI 469

Query: 499 KLHGNRGN 506
            + G  G 
Sbjct: 470 DVLGKGGQ 477


>gi|359488007|ref|XP_002263892.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Vitis vinifera]
          Length = 539

 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 130/492 (26%), Positives = 233/492 (47%), Gaps = 42/492 (8%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M S G  P+V + T +I+ +C    +D A  V  ++   G  P++ T++ LVRG+     
Sbjct: 82  MDSFGIPPDVYTLTIVINSFCHLNRVDFALSVLAKILKLGHQPDTATFTTLVRGLCVVGK 141

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
           +  A      ++++M  E     N   +  L++ LC++  + E   +  +M       + 
Sbjct: 142 IGEA----LDVFDKMVGE-GFQPNVVTYGTLMNGLCKDRQLTEALNLFSEMIAKGISPDI 196

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
           F    +I +LC        + ++  M K  + P++VS N +V  LCK G    A+ +++ 
Sbjct: 197 FTYNSLIHALCNLCEWKHVTTLLNEMVKSKIMPNVVSLNIVVDALCKEGKVTEAHDVVDM 256

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
            IQ G  P   TY  L++G C  S++++A KV   M+                       
Sbjct: 257 MIQGGVEPDVVTYAALMDGHCLRSEMDEAVKVFDMMV----------------------- 293

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
                       +  C  +V++ NT+ING+CK+ RI++A+ +  +M   +   P+ +T++
Sbjct: 294 ------------RNGCVCNVVSYNTLINGYCKIQRIDKAMYLFEEMCRQEL-IPNTMTYS 340

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
           T+I GL +VGR+Q+A+ L +  M   G  P +VTY+ +L  L +  R+ EA  +   + G
Sbjct: 341 TLIHGLCHVGRLQDAIAL-FNEMVACGQIPNLVTYSILLDYLCKNHRLAEAMALLKAIEG 399

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
             +  D   Y I IDG+C +  L+ A+  + ++       D + +  MI+GLC+ G + E
Sbjct: 400 SNLDPDVQVYNIAIDGMCRAGDLEAARDLFSNLAPRGLQPDVWTHNIMIRGLCKRGLLDE 459

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
           A     E+ ++G   N   YN +  G  + +    A Q+L EM   G + D  T  +L K
Sbjct: 460 ASKLFREMDENGCLRNGCTYNTITQGLLQNNKTSRAIQLLEEMLARGFSADVSTTALLVK 519

Query: 500 LHGNRGNDFGLR 511
           +  + G D  ++
Sbjct: 520 MLSDDGLDQSVK 531



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 106/402 (26%), Positives = 204/402 (50%), Gaps = 8/402 (1%)

Query: 107 FANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMR 166
           FA L+ S+ +  + + V  +++ M       + +    +I+S C   R   A  V+  + 
Sbjct: 59  FAKLLTSIAKMKHYSTVLSLSKKMDSFGIPPDVYTLTIVINSFCHLNRVDFALSVLAKIL 118

Query: 167 KRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLE 226
           K G  P   ++ ++V GLC  G    A  + ++ +  G+ P+  TY  L+ GLC +  L 
Sbjct: 119 KLGHQPDTATFTTLVRGLCVVGKIGEALDVFDKMVGEGFQPNVVTYGTLMNGLCKDRQLT 178

Query: 227 KARKVLQFMLSKKDVDRTRICNIYLRALCLI---KNPTELLNVLVFMLQTQCQPDVITLN 283
           +A  +   M++K         N  + ALC +   K+ T LLN    M++++  P+V++LN
Sbjct: 179 EALNLFSEMIAKGISPDIFTYNSLIHALCNLCEWKHVTTLLNE---MVKSKIMPNVVSLN 235

Query: 284 TVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMP 343
            V++  CK G++ EA  V++ M+ G    PD VT+  ++ G      + EA+ + + +M 
Sbjct: 236 IVVDALCKEGKVTEAHDVVDMMIQGGV-EPDVVTYAALMDGHCLRSEMDEAVKV-FDMMV 293

Query: 344 QRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLD 403
           + G    +V+YN ++ G  +++R+++A  +F  M    ++ ++ TY+ +I GLC   +L 
Sbjct: 294 RNGCVCNVVSYNTLINGYCKIQRIDKAMYLFEEMCRQELIPNTMTYSTLIHGLCHVGRLQ 353

Query: 404 EAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463
           +A   ++++V    I +   Y+ ++  LC++ ++ EA+  L  +  S + P++  YN+ I
Sbjct: 354 DAIALFNEMVACGQIPNLVTYSILLDYLCKNHRLAEAMALLKAIEGSNLDPDVQVYNIAI 413

Query: 464 DGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
           DG C+      A  +   +   GL PD  T  I+ +    RG
Sbjct: 414 DGMCRAGDLEAARDLFSNLAPRGLQPDVWTHNIMIRGLCKRG 455



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 115/401 (28%), Positives = 194/401 (48%), Gaps = 12/401 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC + ++GEA  +F  M   G  PNVV+Y TL++G C+  ++  A  +F EM   G+ P+
Sbjct: 136 LCVVGKIGEALDVFDKMVGEGFQPNVVTYGTLMNGLCKDRQLTEALNLFSEMIAKGISPD 195

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             TY+ L+  +    + +    L   L E +K +  +  N  +   +VD+LC+EG V E 
Sbjct: 196 IFTYNSLIHALCNLCEWKHVTTL---LNEMVKSK--IMPNVVSLNIVVDALCKEGKVTEA 250

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             + + M QG    +      ++D  C       A +V  +M + G   ++VSYN++++G
Sbjct: 251 HDVVDMMIQGGVEPDVVTYAALMDGHCLRSEMDEAVKVFDMMVRNGCVCNVVSYNTLING 310

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK     +A  L EE  +   +P+  TY  L+ GLC    L+ A  +   M++   +  
Sbjct: 311 YCKIQRIDKAMYLFEEMCRQELIPNTMTYSTLIHGLCHVGRLQDAIALFNEMVACGQIPN 370

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               +I L  LC      E + +L  +  +   PDV   N  I+G C+ G +E A  + +
Sbjct: 371 LVTYSILLDYLCKNHRLAEAMALLKAIEGSNLDPDVQVYNIAIDGMCRAGDLEAARDLFS 430

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           ++ A +   PD  T   +I GL   G + EA + L++ M + G      TYN + +GL +
Sbjct: 431 NL-APRGLQPDVWTHNIMIRGLCKRGLLDEA-SKLFREMDENGCLRNGCTYNTITQGLLQ 488

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVI-----DGLCES 399
             +   A ++   ML  G  AD +T A+++     DGL +S
Sbjct: 489 NNKTSRAIQLLEEMLARGFSADVSTTALLVKMLSDDGLDQS 529



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 107/448 (23%), Positives = 213/448 (47%), Gaps = 7/448 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C L+RV  A  +   +   GH P+  ++TTL+ G C  G++  A  VFD+M   G 
Sbjct: 98  INSFCHLNRVDFALSVLAKILKLGHQPDTATFTTLVRGLCVVGKIGEALDVFDKMVGEGF 157

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +TY  L+ G+ + R +  A      L+  M   + +S +   + +L+ +LC     
Sbjct: 158 QPNVVTYGTLMNGLCKDRQLTEA----LNLFSEMI-AKGISPDIFTYNSLIHALCNLCEW 212

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
             V  +  +M + K +    +   ++D+LC+ G+   A  VV +M + G+ P +V+Y ++
Sbjct: 213 KHVTTLLNEMVKSKIMPNVVSLNIVVDALCKEGKVTEAHDVVDMMIQGGVEPDVVTYAAL 272

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G C       A ++ +  ++ G + +  +Y  L+ G C    ++KA  + + M  ++ 
Sbjct: 273 MDGHCLRSEMDEAVKVFDMMVRNGCVCNVVSYNTLINGYCKIQRIDKAMYLFEEMCRQEL 332

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           +  T   +  +  LC +    + + +   M+     P+++T + +++  CK  R+ EA+ 
Sbjct: 333 IPNTMTYSTLIHGLCHVGRLQDAIALFNEMVACGQIPNLVTYSILLDYLCKNHRLAEAMA 392

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +L   + G    PD   +   I G+   G ++ A +L   + P RG  P + T+N ++RG
Sbjct: 393 LLK-AIEGSNLDPDVQVYNIAIDGMCRAGDLEAARDLFSNLAP-RGLQPDVWTHNIMIRG 450

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L +   ++EA ++F  M   G + +  TY  +  GL ++N+   A +  ++++      D
Sbjct: 451 LCKRGLLDEASKLFREMDENGCLRNGCTYNTITQGLLQNNKTSRAIQLLEEMLARGFSAD 510

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELV 448
               A ++K L   G        L E +
Sbjct: 511 VSTTALLVKMLSDDGLDQSVKQILCEFM 538



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 113/228 (49%), Gaps = 2/228 (0%)

Query: 270 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG 329
           ML     P +     ++    KM      L +   M +     PD  T T +I    ++ 
Sbjct: 47  MLHMHPPPPIFEFAKLLTSIAKMKHYSTVLSLSKKMDSFGI-PPDVYTLTIVINSFCHLN 105

Query: 330 RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTY 389
           R+  AL++L +++ + G+ P   T+  ++RGL  + ++ EA +VF+ M+G G   +  TY
Sbjct: 106 RVDFALSVLAKIL-KLGHQPDTATFTTLVRGLCVVGKIGEALDVFDKMVGEGFQPNVVTY 164

Query: 390 AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449
             +++GLC+  QL EA   + +++      D + Y ++I  LC   +       L E+V 
Sbjct: 165 GTLMNGLCKDRQLTEALNLFSEMIAKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVK 224

Query: 450 SGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           S + PN+V  N+V+D  CK     EA+ ++  M + G+ PD VT+  L
Sbjct: 225 SKIMPNVVSLNIVVDALCKEGKVTEAHDVVDMMIQGGVEPDVVTYAAL 272


>gi|449454139|ref|XP_004144813.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
 gi|449524964|ref|XP_004169491.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
          Length = 611

 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 121/399 (30%), Positives = 207/399 (51%), Gaps = 5/399 (1%)

Query: 110 LVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRG 169
           L+ +L +E     V  + ++M + K          +I+ LC+ G+ + A  VV  M+  G
Sbjct: 201 LLSALVKENEFGGVEFVYKEMIRRKISPNLITFNTVINGLCKVGKLNKAGDVVDDMKVWG 260

Query: 170 LTPSLVSYNSIVHGLCKHGGCMRAYQ---LLEEGIQFGYLPSEHTYKVLVEGLCGESDLE 226
             P++V+YN+++ G CK G   + Y+   +L+E ++    P+  T+ VL++G C + +L 
Sbjct: 261 FWPNVVTYNTLIDGYCKMGRVGKMYKADAILKEMVENKVSPNSVTFNVLIDGFCKDENLS 320

Query: 227 KARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVI 286
            A KV + M S+         N  +  LC      E   +L  ML +  +P+VIT N +I
Sbjct: 321 AALKVFEEMQSQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLKPNVITYNALI 380

Query: 287 NGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
           NG+CK   +EEA + L D +  +   P+ +TF T++ G    G+++EA  LL +VM ++G
Sbjct: 381 NGYCKKKLLEEA-RELFDNIGKQGLTPNVITFNTLLHGYCKFGKMEEAF-LLQKVMLEKG 438

Query: 347 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
           + P   TYN ++ G  R  ++EE K + N M   GV AD+ TY I+I   CE  +  +A 
Sbjct: 439 FLPNASTYNCLIVGFCREGKMEEVKNLLNEMQCRGVKADTVTYNILISAWCEKKEPKKAA 498

Query: 407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466
           R  D+++       +  Y  ++ G C  G +  A++   ++   G   N+V YNV+I G 
Sbjct: 499 RLIDEMLDKGLKPSHLTYNILLNGYCMEGNLRAALNLRKQMEKEGRWANVVTYNVLIQGY 558

Query: 467 CKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
           C+     +A  +L EM + GL P+  T+ I+ +    +G
Sbjct: 559 CRKGKLEDANGLLNEMLEKGLIPNRTTYEIIKEEMMEKG 597



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 100/387 (25%), Positives = 197/387 (50%), Gaps = 8/387 (2%)

Query: 122 EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
           E F+ A D     SV    +C  ++ +L +     G   V   M +R ++P+L+++N+++
Sbjct: 181 EAFKRAGDYRYKLSV---LSCNPLLSALVKENEFGGVEFVYKEMIRRKISPNLITFNTVI 237

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGES---DLEKARKVLQFMLSK 238
           +GLCK G   +A  ++++   +G+ P+  TY  L++G C       + KA  +L+ M+  
Sbjct: 238 NGLCKVGKLNKAGDVVDDMKVWGFWPNVVTYNTLIDGYCKMGRVGKMYKADAILKEMVEN 297

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
           K    +   N+ +   C  +N +  L V   M     +P V+T N+++NG C  G++ EA
Sbjct: 298 KVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLVNGLCNEGKLNEA 357

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
             +L++M++     P+ +T+  +I G      ++EA  L   +  Q G +P ++T+N +L
Sbjct: 358 KVLLDEMLSSNL-KPNVITYNALINGYCKKKLLEEARELFDNIGKQ-GLTPNVITFNTLL 415

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
            G  +  ++EEA  +   ML  G + +++TY  +I G C   +++E K   +++      
Sbjct: 416 HGYCKFGKMEEAFLLQKVMLEKGFLPNASTYNCLIVGFCREGKMEEVKNLLNEMQCRGVK 475

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI 478
            D   Y  +I   C   +  +A   + E++D G+ P+ + YN++++G C     R A  +
Sbjct: 476 ADTVTYNILISAWCEKKEPKKAARLIDEMLDKGLKPSHLTYNILLNGYCMEGNLRAALNL 535

Query: 479 LREMRKNGLNPDAVTWRILDKLHGNRG 505
            ++M K G   + VT+ +L + +  +G
Sbjct: 536 RKQMEKEGRWANVVTYNVLIQGYCRKG 562



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 105/361 (29%), Positives = 186/361 (51%), Gaps = 12/361 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYK---VFDEMRH 57
           ++ LC + ++ +A  +  DMK  G  PNVV+Y TLI GYC+ G +   YK   +  EM  
Sbjct: 237 INGLCKVGKLNKAGDVVDDMKVWGFWPNVVTYNTLIDGYCKMGRVGKMYKADAILKEMVE 296

Query: 58  CGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCRE 117
             V PNS+T++VL+ G  +  ++  A     K++E M + + L      + +LV+ LC E
Sbjct: 297 NKVSPNSVTFNVLIDGFCKDENLSAA----LKVFEEM-QSQGLKPTVVTYNSLVNGLCNE 351

Query: 118 GYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
           G +NE   + ++M              +I+  C+      A  +   + K+GLTP+++++
Sbjct: 352 GKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKLLEEARELFDNIGKQGLTPNVITF 411

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
           N+++HG CK G    A+ L +  ++ G+LP+  TY  L+ G C E  +E+ + +L  M  
Sbjct: 412 NTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNASTYNCLIVGFCREGKMEEVKNLLNEMQC 471

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
           +     T   NI + A C  K P +   ++  ML    +P  +T N ++NG+C  G +  
Sbjct: 472 RGVKADTVTYNILISAWCEKKEPKKAARLIDEMLDKGLKPSHLTYNILLNGYCMEGNLRA 531

Query: 298 ALKVLNDM-VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
           AL +   M   G++   + VT+  +I G    G++++A  LL +++ ++G  P   TY  
Sbjct: 532 ALNLRKQMEKEGRWA--NVVTYNVLIQGYCRKGKLEDANGLLNEML-EKGLIPNRTTYEI 588

Query: 357 V 357
           +
Sbjct: 589 I 589



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 103/399 (25%), Positives = 201/399 (50%), Gaps = 8/399 (2%)

Query: 8   SRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTY 67
           +  G    ++ +M  R   PN++++ T+I+G C+ G+++ A  V D+M+  G  PN +TY
Sbjct: 209 NEFGGVEFVYKEMIRRKISPNLITFNTVINGLCKVGKLNKAGDVVDDMKVWGFWPNVVTY 268

Query: 68  SVLVRGVLRTRDVERANVLMFKLWERMKE--EEDLSVNNAAFANLVDSLCREGYVNEVFR 125
           + L+ G  +   V +    M+K    +KE  E  +S N+  F  L+D  C++  ++   +
Sbjct: 269 NTLIDGYCKMGRVGK----MYKADAILKEMVENKVSPNSVTFNVLIDGFCKDENLSAALK 324

Query: 126 IAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLC 185
           + E+M              +++ LC  G+ + A  ++  M    L P++++YN++++G C
Sbjct: 325 VFEEMQSQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGYC 384

Query: 186 KHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTR 245
           K      A +L +   + G  P+  T+  L+ G C    +E+A  + + ML K  +    
Sbjct: 385 KKKLLEEARELFDNIGKQGLTPNVITFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNAS 444

Query: 246 ICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM 305
             N  +   C      E+ N+L  M     + D +T N +I+ +C+    ++A +++++M
Sbjct: 445 TYNCLIVGFCREGKMEEVKNLLNEMQCRGVKADTVTYNILISAWCEKKEPKKAARLIDEM 504

Query: 306 VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLR 365
           +  K   P  +T+  ++ G    G ++ ALNL  Q M + G    +VTYN +++G  R  
Sbjct: 505 L-DKGLKPSHLTYNILLNGYCMEGNLRAALNLRKQ-MEKEGRWANVVTYNVLIQGYCRKG 562

Query: 366 RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 404
           ++E+A  + N ML  G++ + TTY I+ + + E   L +
Sbjct: 563 KLEDANGLLNEMLEKGLIPNRTTYEIIKEEMMEKGFLPD 601


>gi|357130030|ref|XP_003566661.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 827

 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 132/496 (26%), Positives = 237/496 (47%), Gaps = 16/496 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    + +A  +   M  +G  P+ V+Y  +IHGY  +G    + K+F +M   G+
Sbjct: 274 VDALCKARAMDKAEFVLRQMVDKGVEPDGVTYNAIIHGYSCSGHWKESAKMFRKMTSKGL 333

Query: 61  LPNSLTYSVLVRGVL---RTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCRE 117
           +P+++T+S  +  +    R++D E     +F+         D+     +++ L+     E
Sbjct: 334 IPDTVTFSSFMSSLCKHGRSKDAEE----IFQYMTTKGHMPDI----VSYSILLHGYATE 385

Query: 118 GYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
           G   ++  +   M     V+       +I +  + G    A  V   M+ +G+ P++V+Y
Sbjct: 386 GRFADMNNLFHSMADKGIVSNCHCINILISAHAKRGMMDEAMLVFTEMQGQGVRPNVVTY 445

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
           ++++   C+ G    A +   + I  G  P+   Y  L+ G C   DL KA++ +  M+S
Sbjct: 446 STLISAFCRMGRLADAMEKFSQMISIGIEPNTAVYHSLIHGFCMHGDLVKAKEFISEMMS 505

Query: 238 KKDVDRTRIC--NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 295
            K + R  I   +  + +LC+     +  +V   ++    +P ++T N++I+G+C +G++
Sbjct: 506 -KGLHRPNIVFFSSIIHSLCIEGRVMDAQDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKM 564

Query: 296 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN 355
           E+A  VL+ MV+     PD VT  T++ G    G+I + L +L++ M  +   P  VTYN
Sbjct: 565 EKAFGVLDAMVSVGI-EPDVVTNNTLVSGYCKSGKIDDGL-ILFREMLHKKVKPTTVTYN 622

Query: 356 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP 415
            VL GL R  R   AK++F+ M+  G   D  TY I++ GLC ++  DEA   +  +   
Sbjct: 623 IVLDGLLRAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKGLCRNDLTDEAITLFHKLGAM 682

Query: 416 SNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREA 475
               D  +   MI  L +  +  EA      +  SG+ PN+  Y V+I    K     EA
Sbjct: 683 DCKFDITILNTMINALYKVRRREEANDLFAAISTSGLVPNVSTYGVMIRNLLKEGSVEEA 742

Query: 476 YQILREMRKNGLNPDA 491
             +   M K+G  P +
Sbjct: 743 DTMFSSMEKSGCAPSS 758



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 126/501 (25%), Positives = 235/501 (46%), Gaps = 43/501 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGH--VPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHC 58
           +  LCG SR  EA  +   M   G    P+VVS+ T+IHG+ + GE+  A  +F+EM   
Sbjct: 202 IKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVIHGFFKQGEVSKACNLFNEMVQK 261

Query: 59  GVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREG 118
           GV+P+  TY+ +V  + + R +++A  ++ ++ ++  E + ++ N               
Sbjct: 262 GVVPDVGTYNSIVDALCKARAMDKAEFVLRQMVDKGVEPDGVTYN--------------- 306

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
                           ++   ++C         SG    ++++   M  +GL P  V+++
Sbjct: 307 ----------------AIIHGYSC---------SGHWKESAKMFRKMTSKGLIPDTVTFS 341

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
           S +  LCKHG    A ++ +     G++P   +Y +L+ G   E        +   M  K
Sbjct: 342 SFMSSLCKHGRSKDAEEIFQYMTTKGHMPDIVSYSILLHGYATEGRFADMNNLFHSMADK 401

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
             V      NI + A        E + V   M     +P+V+T +T+I+ FC+MGR+ +A
Sbjct: 402 GIVSNCHCINILISAHAKRGMMDEAMLVFTEMQGQGVRPNVVTYSTLISAFCRMGRLADA 461

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
           ++  + M++     P+   + ++I G    G + +A   + ++M +  + P IV +++++
Sbjct: 462 MEKFSQMISIGI-EPNTAVYHSLIHGFCMHGDLVKAKEFISEMMSKGLHRPNIVFFSSII 520

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
             L    RV +A++VFN ++ IG      T+  +IDG C   ++++A    D +V     
Sbjct: 521 HSLCIEGRVMDAQDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIE 580

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI 478
            D      ++ G C+SGKI + +    E++   V P  V YN+V+DG  +      A ++
Sbjct: 581 PDVVTNNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYNIVLDGLLRAGRTSAAKKM 640

Query: 479 LREMRKNGLNPDAVTWRILDK 499
             EM  +G   D  T++IL K
Sbjct: 641 FHEMIDSGTAVDIDTYKILLK 661



 Score =  168 bits (425), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 118/454 (25%), Positives = 214/454 (47%), Gaps = 10/454 (2%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           E+ K+F  M S+G +P+ V++++ +   C+ G    A ++F  M   G +P+ ++YS+L+
Sbjct: 320 ESAKMFRKMTSKGLIPDTVTFSSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDIVSYSILL 379

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP 131
            G       E     M  L+  M ++  +S N      L+ +  + G ++E   +  +M 
Sbjct: 380 HGYA----TEGRFADMNNLFHSMADKGIVS-NCHCINILISAHAKRGMMDEAMLVFTEM- 433

Query: 132 QGKSVNEEFAC-GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGC 190
           QG+ V         +I + CR GR   A      M   G+ P+   Y+S++HG C HG  
Sbjct: 434 QGQGVRPNVVTYSTLISAFCRMGRLADAMEKFSQMISIGIEPNTAVYHSLIHGFCMHGDL 493

Query: 191 MRAYQLLEEGIQFG-YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNI 249
           ++A + + E +  G + P+   +  ++  LC E  +  A+ V   ++   D       N 
Sbjct: 494 VKAKEFISEMMSKGLHRPNIVFFSSIIHSLCIEGRVMDAQDVFNLVIHIGDRPTIVTFNS 553

Query: 250 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK 309
            +   CL+    +   VL  M+    +PDV+T NT+++G+CK G+I++ L +  +M+  K
Sbjct: 554 LIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTNNTLVSGYCKSGKIDDGLILFREMLHKK 613

Query: 310 FCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEE 369
              P  VT+  ++ GLL  GR   A  + ++ M   G +  I TY  +L+GL R    +E
Sbjct: 614 V-KPTTVTYNIVLDGLLRAGRTSAAKKMFHE-MIDSGTAVDIDTYKILLKGLCRNDLTDE 671

Query: 370 AKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIK 429
           A  +F+ +  +    D T    +I+ L +  + +EA   +  I     + +   Y  MI+
Sbjct: 672 AITLFHKLGAMDCKFDITILNTMINALYKVRRREEANDLFAAISTSGLVPNVSTYGVMIR 731

Query: 430 GLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463
            L + G + EA      +  SG  P+    N +I
Sbjct: 732 NLLKEGSVEEADTMFSSMEKSGCAPSSRLLNDII 765



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 108/474 (22%), Positives = 214/474 (45%), Gaps = 11/474 (2%)

Query: 28  NVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERA-NVL 86
            V +Y  L+   CR    D+       +   G+   ++  +  ++ +   +  + A +VL
Sbjct: 123 TVRTYGILMDCCCRARRPDLGPAFVARLLRAGLKTGTIQATTFLKCLCHAKRTDEAVDVL 182

Query: 87  MFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQ--GKSVNEEFACGH 144
           + ++ E     + +S N      ++ SLC +    E   + + M +  G+   +  +   
Sbjct: 183 LHRMSELSCVPDAISYNT-----VIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNT 237

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
           +I    + G    A  +   M ++G+ P + +YNSIV  LCK     +A  +L + +  G
Sbjct: 238 VIHGFFKQGEVSKACNLFNEMVQKGVVPDVGTYNSIVDALCKARAMDKAEFVLRQMVDKG 297

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL 264
             P   TY  ++ G       +++ K+ + M SK  +  T   + ++ +LC      +  
Sbjct: 298 VEPDGVTYNAIIHGYSCSGHWKESAKMFRKMTSKGLIPDTVTFSSFMSSLCKHGRSKDAE 357

Query: 265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 324
            +  +M      PD+++ + +++G+   GR  +   + + M A K    +      +I  
Sbjct: 358 EIFQYMTTKGHMPDIVSYSILLHGYATEGRFADMNNLFHSM-ADKGIVSNCHCINILISA 416

Query: 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 384
               G + EA+ L++  M  +G  P +VTY+ ++    R+ R+ +A E F+ M+ IG+  
Sbjct: 417 HAKRGMMDEAM-LVFTEMQGQGVRPNVVTYSTLISAFCRMGRLADAMEKFSQMISIGIEP 475

Query: 385 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV-YAAMIKGLCRSGKIHEAVHF 443
           ++  Y  +I G C    L +AK F  +++       N V ++++I  LC  G++ +A   
Sbjct: 476 NTAVYHSLIHGFCMHGDLVKAKEFISEMMSKGLHRPNIVFFSSIIHSLCIEGRVMDAQDV 535

Query: 444 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
              ++  G  P IV +N +IDG C +    +A+ +L  M   G+ PD VT   L
Sbjct: 536 FNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTNNTL 589



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 105/228 (46%), Gaps = 5/228 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C + ++ +A  +   M S G  P+VV+  TL+ GYC++G++D    +F EM H  V
Sbjct: 555 IDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTNNTLVSGYCKSGKIDDGLILFREMLHKKV 614

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P ++TY++++ G+LR      A     K++  M  +   +V+   +  L+  LCR    
Sbjct: 615 KPTTVTYNIVLDGLLRAGRTSAAK----KMFHEMI-DSGTAVDIDTYKILLKGLCRNDLT 669

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E   +   +       +      MI++L +  R   A+ +   +   GL P++ +Y  +
Sbjct: 670 DEAITLFHKLGAMDCKFDITILNTMINALYKVRRREEANDLFAAISTSGLVPNVSTYGVM 729

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKA 228
           +  L K G    A  +     + G  PS      ++  L  + D+ KA
Sbjct: 730 IRNLLKEGSVEEADTMFSSMEKSGCAPSSRLLNDIIRMLLQKGDIVKA 777



 Score = 45.8 bits (107), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 47/90 (52%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ L  + R  EA+ LF  + + G VPNV +Y  +I    + G ++ A  +F  M   G 
Sbjct: 695 INALYKVRRREEANDLFAAISTSGLVPNVSTYGVMIRNLLKEGSVEEADTMFSSMEKSGC 754

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKL 90
            P+S   + ++R +L+  D+ +A   M K+
Sbjct: 755 APSSRLLNDIIRMLLQKGDIVKAGYYMSKV 784


>gi|356529465|ref|XP_003533312.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 132/497 (26%), Positives = 239/497 (48%), Gaps = 11/497 (2%)

Query: 3   QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           Q   +  V +A   F  M    H P ++ +  ++  + +      A  +   +   G+ P
Sbjct: 33  QPPSIQNVDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQP 92

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           + +T ++L+        +     ++ K+ +R    + +++N      L+  LC +G V +
Sbjct: 93  DLITLNILINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNT-----LIKGLCLKGQVKK 147

Query: 123 VFRIAEDM-PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
                + +  QG  +N+  +   +I+ +C+ G    A + +  +  R   P +V YN+I+
Sbjct: 148 ALHFHDKLLAQGFQLNQ-VSYATLINGVCKIGDTRAAIKFLRKIDGRLTKPDVVMYNTII 206

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
             +CK+     AY L  E    G      TY  L+ G C    L++A  +L  M+ K   
Sbjct: 207 DAMCKYQLVSEAYGLFSEMAVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNEMVLKTIN 266

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
                 NI + ALC      E  +VL  ML+   +PDVIT +T+++G+  +  +++A  V
Sbjct: 267 PNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHV 326

Query: 302 LNDM-VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
            N M + G    PD  T+T +I G      + EALNL ++ M Q+   PGIVTY++++ G
Sbjct: 327 FNAMSLMG--VTPDVHTYTILINGFCKNKMVDEALNL-FKEMHQKNMVPGIVTYSSLIDG 383

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L +  R+    ++ + M   G  AD  TY+ +IDGLC++  LD A   ++ +       +
Sbjct: 384 LCKSGRISYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPN 443

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
            + +  ++ GLC+ G++ +A     +L+  G   N+  YNV+I+G CK  +  EA  +L 
Sbjct: 444 IFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLS 503

Query: 481 EMRKNGLNPDAVTWRIL 497
           +M  NG  P+A T+  +
Sbjct: 504 KMEDNGCIPNAFTFETI 520



 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 127/490 (25%), Positives = 238/490 (48%), Gaps = 13/490 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D    +     A  L   ++ +G  P++++   LI+ +C  G++   + V  ++   G 
Sbjct: 66  LDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGFSVLAKILKRGY 125

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+++T + L++G+     V++A     KL       +   +N  ++A L++ +C+ G  
Sbjct: 126 PPDTVTLNTLIKGLCLKGQVKKALHFHDKLLA-----QGFQLNQVSYATLINGVCKIGDT 180

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
               +    +    +  +      +ID++C+      A  +   M  +G++  +V+YN++
Sbjct: 181 RAAIKFLRKIDGRLTKPDVVMYNTIIDAMCKYQLVSEAYGLFSEMAVKGISADVVTYNTL 240

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS--- 237
           ++G C  G    A  LL E +     P+ +TY +LV+ LC E  +++A+ VL  ML    
Sbjct: 241 IYGFCIVGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACV 300

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
           K DV            +  +K    + N +  M  T   PDV T   +INGFCK   ++E
Sbjct: 301 KPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVT---PDVHTYTILINGFCKNKMVDE 357

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           AL +  +M   K   P  VT++++I GL   GRI    +L+ + M  RG    ++TY+++
Sbjct: 358 ALNLFKEM-HQKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDE-MRDRGQPADVITYSSL 415

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 417
           + GL +   ++ A  +FN M    +  +  T+ I++DGLC+  +L +A+  + D++    
Sbjct: 416 IDGLCKNGHLDRAIALFNKMKDQEIRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGY 475

Query: 418 IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQ 477
             + Y Y  MI G C+ G + EA+  L ++ D+G  PN   +  +I    K     +A +
Sbjct: 476 HLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGCIPNAFTFETIIIALFKKDENDKAEK 535

Query: 478 ILREMRKNGL 487
           +LR+M   GL
Sbjct: 536 LLRQMIARGL 545



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 111/437 (25%), Positives = 214/437 (48%), Gaps = 43/437 (9%)

Query: 107 FANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMR 166
           F  ++DS  +  + +    ++  +       +      +I+  C  G+      V+  + 
Sbjct: 62  FNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGFSVLAKIL 121

Query: 167 KRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLE 226
           KRG  P  V+ N+++ GLC  G   +A    ++ +  G+  ++ +Y  L+ G+C   D  
Sbjct: 122 KRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTR 181

Query: 227 KARKVLQFM---LSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLN 283
            A K L+ +   L+K DV    + N  + A+C  +  +E   +   M       DV+T N
Sbjct: 182 AAIKFLRKIDGRLTKPDV---VMYNTIIDAMCKYQLVSEAYGLFSEMAVKGISADVVTYN 238

Query: 284 TVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMP 343
           T+I GFC +G+++EA+ +LN+MV  K   P+  T+  ++  L   G+++EA ++L  VM 
Sbjct: 239 TLIYGFCIVGKLKEAIGLLNEMVL-KTINPNVYTYNILVDALCKEGKVKEAKSVL-AVML 296

Query: 344 QRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLD 403
           +    P ++TY+ ++ G F +  V++A+ VFN M  +GV  D  TY I+I+G C++  +D
Sbjct: 297 KACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVD 356

Query: 404 EAKRFWDD---------IVWPSNIHD--------NYV------------------YAAMI 428
           EA   + +         IV  S++ D        +YV                  Y+++I
Sbjct: 357 EALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDRGQPADVITYSSLI 416

Query: 429 KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLN 488
            GLC++G +  A+    ++ D  + PNI  + +++DG CK    ++A ++ +++   G +
Sbjct: 417 DGLCKNGHLDRAIALFNKMKDQEIRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYH 476

Query: 489 PDAVTWRILDKLHGNRG 505
            +  T+ ++   H  +G
Sbjct: 477 LNVYTYNVMINGHCKQG 493


>gi|302825350|ref|XP_002994298.1| hypothetical protein SELMODRAFT_138440 [Selaginella moellendorffii]
 gi|300137829|gb|EFJ04642.1| hypothetical protein SELMODRAFT_138440 [Selaginella moellendorffii]
          Length = 577

 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 131/514 (25%), Positives = 242/514 (47%), Gaps = 24/514 (4%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEM-RHCGVLP 62
            C   +V +A +L  +MK RG   +V+ ++TLI G CR G +D A + F  M   C   P
Sbjct: 9   FCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSMGEECS--P 66

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           N +TY+ +V G+ +   ++    L   + +R +       +  +++ ++D+LC+   V++
Sbjct: 67  NVITYNTVVNGLCKANRIDEGLELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQRVDK 126

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
            +   + M              +ID LC+  R   A  ++  ++   + P  + YN++V+
Sbjct: 127 AYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRVDEAYSLLMQLKGEDMVPRAMYYNAVVN 186

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           G  + G      +LL    + G+  +   +  ++  L    + EKA +  + +L      
Sbjct: 187 GFKRQGKPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFFERLLKSGKKP 246

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
                N+ +  LC      E   +L+ M++++  PDVIT +++I+GFCK GR+++A  V 
Sbjct: 247 NVVTYNVAVHGLCKAGKVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKADDVF 306

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
             M+  + C P  VTF T++ G     + +EA   +++ M   G+ PG+ TYN ++  + 
Sbjct: 307 TRMMVHE-CIPHPVTFMTLLHGFSEHKKSREAFR-VHEDMVNAGFIPGLQTYNVLMDCVC 364

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
               VE A E+++ M       D+ TYA +I  LC + ++DEAK F D +   + + +  
Sbjct: 365 GADSVESALEIYHKMKRKKRQPDANTYAPLIQCLCRARRVDEAKEFLDVMEADNVVPNGA 424

Query: 423 VYAAMIKGLCRSGKI-------------------HEAVHFLYELVDSGVTPNIVCYNVVI 463
           +  A+++ LC+ G++                    EAV  + ++V  GV P+   Y  V+
Sbjct: 425 ICHALVEVLCKQGEVDEACSVLDNVVEICKAGEPDEAVEVIEQMVLKGVRPDEATYVAVL 484

Query: 464 DGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
              C L     A     +M   G  P  VT+ +L
Sbjct: 485 RSLCGLDRVDSAIAEFEKMASRGCAPGLVTYTLL 518



 Score =  192 bits (487), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 139/520 (26%), Positives = 233/520 (44%), Gaps = 70/520 (13%)

Query: 4   LCGLSRVGEAHKLFFDMKSR-----GHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHC 58
           LC  +R+ E  +LF DM+ R     G  P+V+SY+T+I   C+   +D AY+ F  MR  
Sbjct: 78  LCKANRIDEGLELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQRVDKAYEYFKRMRAV 137

Query: 59  GVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREG 118
           G  PN +TYS L+ G+ +   V+ A  L+ +L     + ED+      +  +V+   R+G
Sbjct: 138 GCAPNVVTYSSLIDGLCKVDRVDEAYSLLMQL-----KGEDMVPRAMYYNAVVNGFKRQG 192

Query: 119 YVNEVFRIAEDMPQ-GKSVN-EEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVS 176
             +E   +   M + G  +N  +F    M+ +L ++     A +    + K G  P++V+
Sbjct: 193 KPSECLELLLHMKEKGFGINIIDF--NAMLHALWKNDEQEKACQFFERLLKSGKKPNVVT 250

Query: 177 YNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFML 236
           YN  VHGLCK G    AY++L E ++    P   TY  +++G C    ++KA        
Sbjct: 251 YNVAVHGLCKAGKVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKAD------- 303

Query: 237 SKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIE 296
                                       +V   M+  +C P  +T  T+++GF +  +  
Sbjct: 304 ----------------------------DVFTRMMVHECIPHPVTFMTLLHGFSEHKKSR 335

Query: 297 EALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
           EA +V  DMV   F  P   T+  ++  +     ++ AL  +Y  M ++   P   TY  
Sbjct: 336 EAFRVHEDMVNAGF-IPGLQTYNVLMDCVCGADSVESALE-IYHKMKRKKRQPDANTYAP 393

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV--- 413
           +++ L R RRV+EAKE  + M    VV +      +++ LC+  ++DEA    D++V   
Sbjct: 394 LIQCLCRARRVDEAKEFLDVMEADNVVPNGAICHALVEVLCKQGEVDEACSVLDNVVEIC 453

Query: 414 ---WPSNI-------------HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIV 457
               P                 D   Y A+++ LC   ++  A+    ++   G  P +V
Sbjct: 454 KAGEPDEAVEVIEQMVLKGVRPDEATYVAVLRSLCGLDRVDSAIAEFEKMASRGCAPGLV 513

Query: 458 CYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            Y ++I  AC   M  +A++I   M   G  P A T R L
Sbjct: 514 TYTLLIGEACSADMADDAFRIFEAMVAAGFTPQAQTMRTL 553



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 129/487 (26%), Positives = 234/487 (48%), Gaps = 32/487 (6%)

Query: 32  YTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLW 91
           YTT+I+G+C+ G++D A+++ DEM+  GV  + L +S L++G+ R   ++ A     + +
Sbjct: 2   YTTVINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEA----LEQF 57

Query: 92  ERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVN-----EEFACGHMI 146
           + M EE   S N   +  +V+ LC+   ++E   + +DM +    +     +  +   +I
Sbjct: 58  KSMGEE--CSPNVITYNTVVNGLCKANRIDEGLELFDDMEKRYEASHGCEPDVISYSTVI 115

Query: 147 DSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL 206
           D+LC++ R   A      MR  G  P++V+Y+S++ GLCK      AY LL +      +
Sbjct: 116 DALCKAQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRVDEAYSLLMQLKGEDMV 175

Query: 207 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 266
           P    Y  +V G   +    +  ++L  M  K         N  L AL       +    
Sbjct: 176 PRAMYYNAVVNGFKRQGKPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQF 235

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
              +L++  +P+V+T N  ++G CK G+++EA ++L +MV  K   PD +T+++II G  
Sbjct: 236 FERLLKSGKKPNVVTYNVAVHGLCKAGKVDEAYRILLEMVESKV-TPDVITYSSIIDGFC 294

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
             GR+ +A ++  ++M      P  VT+  +L G    ++  EA  V   M+  G +   
Sbjct: 295 KAGRMDKADDVFTRMMVHECI-PHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGL 353

Query: 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE 446
            TY +++D +C ++ ++ A   +  +       D   YA +I+ LCR+ ++ EA  FL  
Sbjct: 354 QTYNVLMDCVCGADSVESALEIYHKMKRKKRQPDANTYAPLIQCLCRARRVDEAKEFLDV 413

Query: 447 LVDSGVTPN---------IVCYNVVIDGA----------CKLSMKREAYQILREMRKNGL 487
           +    V PN         ++C    +D A          CK     EA +++ +M   G+
Sbjct: 414 MEADNVVPNGAICHALVEVLCKQGEVDEACSVLDNVVEICKAGEPDEAVEVIEQMVLKGV 473

Query: 488 NPDAVTW 494
            PD  T+
Sbjct: 474 RPDEATY 480



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 93/396 (23%), Positives = 185/396 (46%), Gaps = 43/396 (10%)

Query: 107 FANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMR 166
           +  +++  C+ G V++ F + ++M +     +      +I  LCR GR   A      M 
Sbjct: 2   YTTVINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSMG 61

Query: 167 KRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE-----GIQFGYLPSEHTYKVLVEGLCG 221
           +   +P++++YN++V+GLCK        +L ++         G  P   +Y  +++ LC 
Sbjct: 62  EE-CSPNVITYNTVVNGLCKANRIDEGLELFDDMEKRYEASHGCEPDVISYSTVIDALCK 120

Query: 222 ESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVIT 281
              ++KA +  + M                RA+                    C P+V+T
Sbjct: 121 AQRVDKAYEYFKRM----------------RAV-------------------GCAPNVVT 145

Query: 282 LNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQV 341
            +++I+G CK+ R++EA  +L  +  G+   P A+ +  ++ G    G+  E L LL   
Sbjct: 146 YSSLIDGLCKVDRVDEAYSLLMQL-KGEDMVPRAMYYNAVVNGFKRQGKPSECLELLLH- 203

Query: 342 MPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ 401
           M ++G+   I+ +NA+L  L++    E+A + F  +L  G   +  TY + + GLC++ +
Sbjct: 204 MKEKGFGINIIDFNAMLHALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGK 263

Query: 402 LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNV 461
           +DEA R   ++V      D   Y+++I G C++G++ +A      ++     P+ V +  
Sbjct: 264 VDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMT 323

Query: 462 VIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           ++ G  +    REA+++  +M   G  P   T+ +L
Sbjct: 324 LLHGFSEHKKSREAFRVHEDMVNAGFIPGLQTYNVL 359



 Score = 42.7 bits (99), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 26/118 (22%), Positives = 50/118 (42%), Gaps = 40/118 (33%)

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGV------------------------------ 452
           +Y  +I G C++G++ +A   L E+ + GV                              
Sbjct: 1   MYTTVINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSM 60

Query: 453 ----TPNIVCYNVVIDGACKLSMKREAYQILREMRK-----NGLNPDAVTWR-ILDKL 500
               +PN++ YN V++G CK +   E  ++  +M K     +G  PD +++  ++D L
Sbjct: 61  GEECSPNVITYNTVVNGLCKANRIDEGLELFDDMEKRYEASHGCEPDVISYSTVIDAL 118


>gi|357499777|ref|XP_003620177.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495192|gb|AES76395.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 612

 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 129/485 (26%), Positives = 232/485 (47%), Gaps = 47/485 (9%)

Query: 7   LSRVGEAH---KLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            S++G  H    +F ++  +G+ PN ++ TTLI G C  G++  A    D++   G   N
Sbjct: 101 FSQLGHTHFSFSVFANILKKGYEPNAITLTTLIKGLCLKGQIHQALHFHDKVVALGFHLN 160

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            + Y  L+ G+ +      A  L+ ++  ++ +      N   +  ++DS+C+   VNE 
Sbjct: 161 KVCYGTLINGLCKVGQTSAALQLLRRVDGKLVQP-----NVVMYNTIIDSMCKVKLVNEA 215

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           F +  +                                   M  +G++P +V+Y++++ G
Sbjct: 216 FDLYSE-----------------------------------MVSKGISPDVVTYSALISG 240

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK-DVD 242
            C  G    A  L  + I     P  +T+ +LV+G C E  +++A+ VL  M+ +    D
Sbjct: 241 FCILGKLNDAIGLFNKMISEEINPDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQGIKPD 300

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
               C++ +   CL+K   +  ++   M Q     +V + N +INGFCK+ +++EA+ + 
Sbjct: 301 VVTYCSL-MDGYCLVKQVNKAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNLF 359

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
            +M   K   PD VT+ ++I GL   G+I  AL L+ + M  RG     +TYN++L  L 
Sbjct: 360 KEMHC-KNIIPDVVTYNSLIDGLCKSGKISYALKLVDE-MHDRGVPHDKITYNSILDALC 417

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
           +  +V++A  +   M   G+  D  TY I+IDGLC+  +L +A+  ++D++        Y
Sbjct: 418 KNHQVDKAIALLTKMKDEGIQPDMYTYTILIDGLCKGGRLKDAQNIFEDLLVKGYNITVY 477

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
            Y  MI+G C +    +A+  L ++ D+G  PN   Y ++I    +      A ++LREM
Sbjct: 478 TYTVMIQGFCDNDLFDKALALLSKMEDNGCIPNAKTYEIIILSLFEKDENDMAEKLLREM 537

Query: 483 RKNGL 487
              GL
Sbjct: 538 IARGL 542



 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 104/353 (29%), Positives = 192/353 (54%), Gaps = 2/353 (0%)

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
           +I+   + G  H +  V   + K+G  P+ ++  +++ GLC  G   +A    ++ +  G
Sbjct: 97  LINCFSQLGHTHFSFSVFANILKKGYEPNAITLTTLIKGLCLKGQIHQALHFHDKVVALG 156

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL 264
           +  ++  Y  L+ GLC       A ++L+ +  K       + N  + ++C +K   E  
Sbjct: 157 FHLNKVCYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAF 216

Query: 265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 324
           ++   M+     PDV+T + +I+GFC +G++ +A+ + N M++ +   PD  TF+ ++ G
Sbjct: 217 DLYSEMVSKGISPDVVTYSALISGFCILGKLNDAIGLFNKMISEEI-NPDVYTFSILVDG 275

Query: 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 384
               GR++EA N+L  +M Q G  P +VTY +++ G   +++V +AK +FN M   GV A
Sbjct: 276 FCKEGRVKEAKNVLAMMMKQ-GIKPDVVTYCSLMDGYCLVKQVNKAKSIFNTMAQGGVTA 334

Query: 385 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFL 444
           +  +Y I+I+G C+  ++DEA   + ++   + I D   Y ++I GLC+SGKI  A+  +
Sbjct: 335 NVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNSLIDGLCKSGKISYALKLV 394

Query: 445 YELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            E+ D GV  + + YN ++D  CK     +A  +L +M+  G+ PD  T+ IL
Sbjct: 395 DEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDMYTYTIL 447



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 117/484 (24%), Positives = 232/484 (47%), Gaps = 52/484 (10%)

Query: 19  DMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTR 78
           +M+  G   ++V++  LI+ + + G    ++ VF  +   G  PN++T + L++G+    
Sbjct: 81  EMEFNGIASDLVTFNILINCFSQLGHTHFSFSVFANILKKGYEPNAITLTTLIKGLCLKG 140

Query: 79  DVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNE 138
            + +A     K+           +N   +  L++ LC+ G  +   ++   +  GK V  
Sbjct: 141 QIHQALHFHDKVVAL-----GFHLNKVCYGTLINGLCKVGQTSAALQLLRRV-DGKLVQP 194

Query: 139 EFAC-GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLL 197
                  +IDS+C+    + A  +   M  +G++P +V+Y++++ G C  G    A  L 
Sbjct: 195 NVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYSALISGFCILGKLNDAIGLF 254

Query: 198 EEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLI 257
            + I     P  +T+ +LV+G C E  +++A+                            
Sbjct: 255 NKMISEEINPDVYTFSILVDGFCKEGRVKEAK---------------------------- 286

Query: 258 KNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVT 317
                  NVL  M++   +PDV+T  ++++G+C + ++ +A  + N M  G   A +  +
Sbjct: 287 -------NVLAMMMKQGIKPDVVTYCSLMDGYCLVKQVNKAKSIFNTMAQGGVTA-NVQS 338

Query: 318 FTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCM 377
           +  +I G   + ++ EA+NL ++ M  +   P +VTYN+++ GL +  ++  A ++ + M
Sbjct: 339 YNIMINGFCKIKKVDEAMNL-FKEMHCKNIIPDVVTYNSLIDGLCKSGKISYALKLVDEM 397

Query: 378 LGIGVVADSTTYAIVIDGLCESNQLDEA----KRFWDDIVWPSNIHDNYVYAAMIKGLCR 433
              GV  D  TY  ++D LC+++Q+D+A     +  D+ + P    D Y Y  +I GLC+
Sbjct: 398 HDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQP----DMYTYTILIDGLCK 453

Query: 434 SGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVT 493
            G++ +A +   +L+  G    +  Y V+I G C   +  +A  +L +M  NG  P+A T
Sbjct: 454 GGRLKDAQNIFEDLLVKGYNITVYTYTVMIQGFCDNDLFDKALALLSKMEDNGCIPNAKT 513

Query: 494 WRIL 497
           + I+
Sbjct: 514 YEII 517



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 105/385 (27%), Positives = 181/385 (47%), Gaps = 11/385 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC + +   A +L   +  +   PNVV Y T+I   C+   ++ A+ ++ EM   G+
Sbjct: 168 INGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGI 227

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TYS L+ G      +  A      L+ +M  EE ++ +   F+ LVD  C+EG V
Sbjct: 228 SPDVVTYSALISGFCILGKLNDA----IGLFNKMISEE-INPDVYTFSILVDGFCKEGRV 282

Query: 121 NEVFRI-AEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
            E   + A  M QG   +    C  ++D  C   + + A  +   M + G+T ++ SYN 
Sbjct: 283 KEAKNVLAMMMKQGIKPDVVTYCS-LMDGYCLVKQVNKAKSIFNTMAQGGVTANVQSYNI 341

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           +++G CK      A  L +E      +P   TY  L++GLC    +  A K++  M   +
Sbjct: 342 MINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNSLIDGLCKSGKISYALKLVDEM-HDR 400

Query: 240 DVDRTRIC-NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
            V   +I  N  L ALC      + + +L  M     QPD+ T   +I+G CK GR+++A
Sbjct: 401 GVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDMYTYTILIDGLCKGGRLKDA 460

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
             +  D++   +      T+T +I G  +     +AL LL + M   G  P   TY  ++
Sbjct: 461 QNIFEDLLVKGYNIT-VYTYTVMIQGFCDNDLFDKALALLSK-MEDNGCIPNAKTYEIII 518

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVV 383
             LF     + A+++   M+  G++
Sbjct: 519 LSLFEKDENDMAEKLLREMIARGLL 543


>gi|449460383|ref|XP_004147925.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like [Cucumis sativus]
 gi|449516585|ref|XP_004165327.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like [Cucumis sativus]
          Length = 701

 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 136/531 (25%), Positives = 263/531 (49%), Gaps = 48/531 (9%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C   +  +   L   M   G  P+++SY TLI+   ++G +  A ++FDEM   GV P+ 
Sbjct: 160 CKKRQFEKGKGLLTWMFENGLNPDILSYGTLINALAKSGNLLDAVELFDEMSVRGVNPDV 219

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           + Y++L+ G LR  D  +AN    ++W+R+  E  +  +   +  +++ LC+ G ++E  
Sbjct: 220 MCYNILIDGFLRKGDFVKAN----EIWKRLLTESSVYPSVETYNIMINGLCKLGKLDESM 275

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
            +   M + +   + F    MI  L ++G  + A +V   M + GL+P + +YN+++ GL
Sbjct: 276 EMWNRMKKNEKSPDLFTFSSMIHGLSKAGNFNAAEKVFQEMIESGLSPDVRTYNAMLSGL 335

Query: 185 CKHGGCMRAYQL---------------------------LEEGIQFGYLPSEH------- 210
            + G   + ++L                           +E+ I +  L  E        
Sbjct: 336 FRTGKLNKCFELWNVMSKNNCCNIVSYNMLIQGLLDNKKVEQAICYWQLLHERGLKADST 395

Query: 211 TYKVLVEGLCGESDLEKARKVLQFMLSK-KDVDRTRICNIYLRALC---LIKNPTELLNV 266
           TY +L+ GLC    L KA ++L+   ++  D+D T   +  +  LC   +++   EL++ 
Sbjct: 396 TYGLLINGLCKNGYLNKALRILEEAENEGADLD-TFAYSSMVHGLCKKGMLEQAVELIHQ 454

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
              M + + + +    N++ING+ +  ++EEA+ VL +M   K CAP  V++ TII GL 
Sbjct: 455 ---MKKNRRKLNSHVFNSLINGYVRAFKLEEAISVLREM-KSKDCAPTVVSYNTIINGLC 510

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
              R  +A  L  + M + G  P ++TY+ ++ GL R  +V+ A  +++  +   +  D 
Sbjct: 511 KAERFSDAY-LSLKEMLEEGLKPDMITYSLLIDGLCRGEKVDMALNLWHQCINKRLKPDL 569

Query: 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE 446
             + I+I GLC + ++D A   +  +   + + D   +  +++GL ++G   EA+     
Sbjct: 570 QMHNIIIHGLCTAQKVDVALEIFTQMRQVNCVPDLVTHNTIMEGLYKAGDCVEALKIWDR 629

Query: 447 LVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           ++++G+ P+I+ YN+   G C  +   +A + L +    G+ P+A TW +L
Sbjct: 630 ILEAGLQPDIISYNITFKGLCSCARVSDAIEFLYDALDRGILPNAPTWNVL 680



 Score =  188 bits (477), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 131/491 (26%), Positives = 234/491 (47%), Gaps = 50/491 (10%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEM-RHCGVLPNSLTYSVL 70
           +A +LF +M  RG  P+V+ Y  LI G+ R G+   A +++  +     V P+  TY+++
Sbjct: 202 DAVELFDEMSVRGVNPDVMCYNILIDGFLRKGDFVKANEIWKRLLTESSVYPSVETYNIM 261

Query: 71  VRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDM 130
           + G+ +   ++ +     ++W RMK+ E  S +   F++++  L + G  N   ++ ++M
Sbjct: 262 INGLCKLGKLDES----MEMWNRMKKNEK-SPDLFTFSSMIHGLSKAGNFNAAEKVFQEM 316

Query: 131 PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRK----------------------- 167
            +     +      M+  L R+G+ +    +  VM K                       
Sbjct: 317 IESGLSPDVRTYNAMLSGLFRTGKLNKCFELWNVMSKNNCCNIVSYNMLIQGLLDNKKVE 376

Query: 168 -----------RGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLV 216
                      RGL     +Y  +++GLCK+G   +A ++LEE    G       Y  +V
Sbjct: 377 QAICYWQLLHERGLKADSTTYGLLINGLCKNGYLNKALRILEEAENEGADLDTFAYSSMV 436

Query: 217 EGLCGESDLEKARKVLQFMLSKKDVDRTRICNI----YLRALCLIKNPTELLNVLVFMLQ 272
            GLC +  LE+A +++  M   +    + + N     Y+RA  L     E ++VL  M  
Sbjct: 437 HGLCKKGMLEQAVELIHQMKKNRRKLNSHVFNSLINGYVRAFKL----EEAISVLREMKS 492

Query: 273 TQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQ 332
             C P V++ NT+ING CK  R  +A   L +M+      PD +T++ +I GL    ++ 
Sbjct: 493 KDCAPTVVSYNTIINGLCKAERFSDAYLSLKEMLEEGL-KPDMITYSLLIDGLCRGEKVD 551

Query: 333 EALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIV 392
            ALNL +Q + +R   P +  +N ++ GL   ++V+ A E+F  M  +  V D  T+  +
Sbjct: 552 MALNLWHQCINKR-LKPDLQMHNIIIHGLCTAQKVDVALEIFTQMRQVNCVPDLVTHNTI 610

Query: 393 IDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGV 452
           ++GL ++    EA + WD I+      D   Y    KGLC   ++ +A+ FLY+ +D G+
Sbjct: 611 MEGLYKAGDCVEALKIWDRILEAGLQPDIISYNITFKGLCSCARVSDAIEFLYDALDRGI 670

Query: 453 TPNIVCYNVVI 463
            PN   +NV++
Sbjct: 671 LPNAPTWNVLV 681



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 106/429 (24%), Positives = 193/429 (44%), Gaps = 74/429 (17%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC L ++ E+ +++  MK     P++ +++++IHG  + G  + A KVF EM   G+
Sbjct: 262 INGLCKLGKLDESMEMWNRMKKNEKSPDLFTFSSMIHGLSKAGNFNAAEKVFQEMIESGL 321

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKE------------------------ 96
            P+  TY+ ++ G+ RT  + +     F+LW  M +                        
Sbjct: 322 SPDVRTYNAMLSGLFRTGKLNKC----FELWNVMSKNNCCNIVSYNMLIQGLLDNKKVEQ 377

Query: 97  ---------EEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMID 147
                    E  L  ++  +  L++ LC+ GY+N+  RI E+     +  + FA   M+ 
Sbjct: 378 AICYWQLLHERGLKADSTTYGLLINGLCKNGYLNKALRILEEAENEGADLDTFAYSSMVH 437

Query: 148 SLCRSGRNHGASRVVYVMRK-----------------------------------RGLTP 172
            LC+ G    A  +++ M+K                                   +   P
Sbjct: 438 GLCKKGMLEQAVELIHQMKKNRRKLNSHVFNSLINGYVRAFKLEEAISVLREMKSKDCAP 497

Query: 173 SLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVL 232
           ++VSYN+I++GLCK      AY  L+E ++ G  P   TY +L++GLC    ++ A  + 
Sbjct: 498 TVVSYNTIINGLCKAERFSDAYLSLKEMLEEGLKPDMITYSLLIDGLCRGEKVDMALNLW 557

Query: 233 QFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKM 292
              ++K+     ++ NI +  LC  +     L +   M Q  C PD++T NT++ G  K 
Sbjct: 558 HQCINKRLKPDLQMHNIIIHGLCTAQKVDVALEIFTQMRQVNCVPDLVTHNTIMEGLYKA 617

Query: 293 GRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIV 352
           G   EALK+ + ++      PD +++     GL +  R+ +A+  LY  +  RG  P   
Sbjct: 618 GDCVEALKIWDRILEAGL-QPDIISYNITFKGLCSCARVSDAIEFLYDAL-DRGILPNAP 675

Query: 353 TYNAVLRGL 361
           T+N ++R +
Sbjct: 676 TWNVLVRAV 684



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 104/389 (26%), Positives = 187/389 (48%), Gaps = 39/389 (10%)

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
           +I   C+  +      ++  M + GL P ++SY ++++ L K G  + A +L +E    G
Sbjct: 155 LIKISCKKRQFEKGKGLLTWMFENGLNPDILSYGTLINALAKSGNLLDAVELFDEMSVRG 214

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV-DRTRICNIYLRALCLIKNPTEL 263
             P    Y +L++G   + D  KA ++ + +L++  V       NI +  LC +    E 
Sbjct: 215 VNPDVMCYNILIDGFLRKGDFVKANEIWKRLLTESSVYPSVETYNIMINGLCKLGKLDES 274

Query: 264 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF 323
           + +   M + +  PD+ T +++I+G  K G    A KV  +M+     +PD  T+  ++ 
Sbjct: 275 MEMWNRMKKNEKSPDLFTFSSMIHGLSKAGNFNAAEKVFQEMIESGL-SPDVRTYNAMLS 333

Query: 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 383
           GL   G++ +    L+ VM +      IV+YN +++GL   ++VE+A   +  +   G+ 
Sbjct: 334 GLFRTGKLNKCFE-LWNVMSKNNCC-NIVSYNMLIQGLLDNKKVEQAICYWQLLHERGLK 391

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG-------- 435
           ADSTTY ++I+GLC++  L++A R  ++        D + Y++M+ GLC+ G        
Sbjct: 392 ADSTTYGLLINGLCKNGYLNKALRILEEAENEGADLDTFAYSSMVHGLCKKGMLEQAVEL 451

Query: 436 ---------------------------KIHEAVHFLYELVDSGVTPNIVCYNVVIDGACK 468
                                      K+ EA+  L E+      P +V YN +I+G CK
Sbjct: 452 IHQMKKNRRKLNSHVFNSLINGYVRAFKLEEAISVLREMKSKDCAPTVVSYNTIINGLCK 511

Query: 469 LSMKREAYQILREMRKNGLNPDAVTWRIL 497
                +AY  L+EM + GL PD +T+ +L
Sbjct: 512 AERFSDAYLSLKEMLEEGLKPDMITYSLL 540



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 124/561 (22%), Positives = 242/561 (43%), Gaps = 80/561 (14%)

Query: 8   SRVGEAHKLFFDMKS-RGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLT 66
           S   +A  LF +M    G  P + S+ ++++ +  + +   A   F   +  G+ PN  T
Sbjct: 92  SMPDQALNLFQNMVDIFGCNPGIRSFNSMLNAFIESNQWREAELFFTYFQTAGMSPNLQT 151

Query: 67  YSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRI 126
           Y++L++   + R  E+   L+  ++E     + LS     +  L+++L + G + +   +
Sbjct: 152 YNILIKISCKKRQFEKGKGLLTWMFENGLNPDILS-----YGTLINALAKSGNLLDAVEL 206

Query: 127 AEDMPQGKSVNEEFACGH-------------------------------------MIDSL 149
            ++M   + VN +  C +                                     MI+ L
Sbjct: 207 FDEM-SVRGVNPDVMCYNILIDGFLRKGDFVKANEIWKRLLTESSVYPSVETYNIMINGL 265

Query: 150 CRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSE 209
           C+ G+   +  +   M+K   +P L +++S++HGL K G    A ++ +E I+ G  P  
Sbjct: 266 CKLGKLDESMEMWNRMKKNEKSPDLFTFSSMIHGLSKAGNFNAAEKVFQEMIESGLSPDV 325

Query: 210 HTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVF 269
            TY  ++ GL     L K  ++   M SK +       N+ ++ L   K   + +     
Sbjct: 326 RTYNAMLSGLFRTGKLNKCFELWNVM-SKNNCCNIVSYNMLIQGLLDNKKVEQAICYWQL 384

Query: 270 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG 329
           + +   + D  T   +ING CK G + +AL++L +    +    D   +++++ GL   G
Sbjct: 385 LHERGLKADSTTYGLLINGLCKNGYLNKALRILEE-AENEGADLDTFAYSSMVHGLCKKG 443

Query: 330 RIQEALNLLYQVMPQR-------------GY---------------------SPGIVTYN 355
            +++A+ L++Q+   R             GY                     +P +V+YN
Sbjct: 444 MLEQAVELIHQMKKNRRKLNSHVFNSLINGYVRAFKLEEAISVLREMKSKDCAPTVVSYN 503

Query: 356 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP 415
            ++ GL +  R  +A      ML  G+  D  TY+++IDGLC   ++D A   W   +  
Sbjct: 504 TIINGLCKAERFSDAYLSLKEMLEEGLKPDMITYSLLIDGLCRGEKVDMALNLWHQCINK 563

Query: 416 SNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREA 475
               D  ++  +I GLC + K+  A+    ++      P++V +N +++G  K     EA
Sbjct: 564 RLKPDLQMHNIIIHGLCTAQKVDVALEIFTQMRQVNCVPDLVTHNTIMEGLYKAGDCVEA 623

Query: 476 YQILREMRKNGLNPDAVTWRI 496
            +I   + + GL PD +++ I
Sbjct: 624 LKIWDRILEAGLQPDIISYNI 644



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 72/329 (21%), Positives = 148/329 (44%), Gaps = 37/329 (11%)

Query: 169 GLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKA 228
           G  P + S+NS+++   +      A          G  P+  TY +L++  C +   EK 
Sbjct: 109 GCNPGIRSFNSMLNAFIESNQWREAELFFTYFQTAGMSPNLQTYNILIKISCKKRQFEKG 168

Query: 229 RKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVING 288
           +                                    +L +M +    PD+++  T+IN 
Sbjct: 169 K-----------------------------------GLLTWMFENGLNPDILSYGTLINA 193

Query: 289 FCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYS 348
             K G + +A+++ ++M + +   PD + +  +I G L  G   +A  +  +++ +    
Sbjct: 194 LAKSGNLLDAVELFDEM-SVRGVNPDVMCYNILIDGFLRKGDFVKANEIWKRLLTESSVY 252

Query: 349 PGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRF 408
           P + TYN ++ GL +L +++E+ E++N M       D  T++ +I GL ++   + A++ 
Sbjct: 253 PSVETYNIMINGLCKLGKLDESMEMWNRMKKNEKSPDLFTFSSMIHGLSKAGNFNAAEKV 312

Query: 409 WDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACK 468
           + +++      D   Y AM+ GL R+GK+++    L+ ++      NIV YN++I G   
Sbjct: 313 FQEMIESGLSPDVRTYNAMLSGLFRTGKLNKCFE-LWNVMSKNNCCNIVSYNMLIQGLLD 371

Query: 469 LSMKREAYQILREMRKNGLNPDAVTWRIL 497
                +A    + + + GL  D+ T+ +L
Sbjct: 372 NKKVEQAICYWQLLHERGLKADSTTYGLL 400



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 104/220 (47%), Gaps = 11/220 (5%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           ++ EA  +  +MKS+   P VVSY T+I+G C+      AY    EM   G+ P+ +TYS
Sbjct: 479 KLEEAISVLREMKSKDCAPTVVSYNTIINGLCKAERFSDAYLSLKEMLEEGLKPDMITYS 538

Query: 69  VLVRGVLRTRDVERANVLMFKLWER---MKEEEDLSVNNAAFANLVDSLCREGYVNEVFR 125
           +L+ G+ R   V+ A      LW +    + + DL ++N     ++  LC    V+    
Sbjct: 539 LLIDGLCRGEKVDMA----LNLWHQCINKRLKPDLQMHNI----IIHGLCTAQKVDVALE 590

Query: 126 IAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLC 185
           I   M Q   V +      +++ L ++G    A ++   + + GL P ++SYN    GLC
Sbjct: 591 IFTQMRQVNCVPDLVTHNTIMEGLYKAGDCVEALKIWDRILEAGLQPDIISYNITFKGLC 650

Query: 186 KHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDL 225
                  A + L + +  G LP+  T+ VLV  +  +  L
Sbjct: 651 SCARVSDAIEFLYDALDRGILPNAPTWNVLVRAVVDDKPL 690



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 109/229 (47%), Gaps = 6/229 (2%)

Query: 275 CQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEA 334
           C  DV    + I  + K    ++AL +  +MV    C P   +F +++   +   + +EA
Sbjct: 76  CSEDVAL--SAIKAYAKCSMPDQALNLFQNMVDIFGCNPGIRSFNSMLNAFIESNQWREA 133

Query: 335 LNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVID 394
             L +      G SP + TYN +++   + R+ E+ K +   M   G+  D  +Y  +I+
Sbjct: 134 -ELFFTYFQTAGMSPNLQTYNILIKISCKKRQFEKGKGLLTWMFENGLNPDILSYGTLIN 192

Query: 395 GLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELV-DSGVT 453
            L +S  L +A   +D++       D   Y  +I G  R G   +A      L+ +S V 
Sbjct: 193 ALAKSGNLLDAVELFDEMSVRGVNPDVMCYNILIDGFLRKGDFVKANEIWKRLLTESSVY 252

Query: 454 PNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
           P++  YN++I+G CKL    E+ ++   M+KN  +PD  T+  +  +HG
Sbjct: 253 PSVETYNIMINGLCKLGKLDESMEMWNRMKKNEKSPDLFTFSSM--IHG 299



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 40/195 (20%), Positives = 76/195 (38%), Gaps = 1/195 (0%)

Query: 313 PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKE 372
           P  ++ T ++  L        AL +        GY+     ++ +LR L   + V     
Sbjct: 5   PKVISPTLVLKLLKAEKNPNAALAIFDSACQHPGYAHPPFVFHHILRRLMDPKLVVHVGR 64

Query: 373 VFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY-VYAAMIKGL 431
           + + M               I    + +  D+A   + ++V     +     + +M+   
Sbjct: 65  IVDLMRAQRCTCSEDVALSAIKAYAKCSMPDQALNLFQNMVDIFGCNPGIRSFNSMLNAF 124

Query: 432 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 491
             S +  EA  F      +G++PN+  YN++I  +CK     +   +L  M +NGLNPD 
Sbjct: 125 IESNQWREAELFFTYFQTAGMSPNLQTYNILIKISCKKRQFEKGKGLLTWMFENGLNPDI 184

Query: 492 VTWRILDKLHGNRGN 506
           +++  L       GN
Sbjct: 185 LSYGTLINALAKSGN 199


>gi|334182978|ref|NP_001185123.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
 gi|332193283|gb|AEE31404.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 811

 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 136/481 (28%), Positives = 228/481 (47%), Gaps = 15/481 (3%)

Query: 24  GHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERA 83
           G  PNVV++ TLI+G+C+ GEMD A+ +F  M   G+ P+ + YS L+ G  +   +   
Sbjct: 281 GPAPNVVTFCTLINGFCKRGEMDRAFDLFKVMEQRGIEPDLIAYSTLIDGYFKAGMLGMG 340

Query: 84  NVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP-QGKSVNEEFAC 142
           + L  +   +      + ++   F++ +D   + G +     + + M  QG S N     
Sbjct: 341 HKLFSQALHK-----GVKLDVVVFSSTIDVYVKSGDLATASVVYKRMLCQGISPNV-VTY 394

Query: 143 GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQ 202
             +I  LC+ GR + A  +   + KRG+ PS+V+Y+S++ G CK G     + L E+ I+
Sbjct: 395 TILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLIDGFCKCGNLRSGFALYEDMIK 454

Query: 203 FGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTE 262
            GY P    Y VLV+GL  +  +  A +    ML +       + N  +   C +    E
Sbjct: 455 MGYPPDVVIYGVLVDGLSKQGLMLHAMRFSVKMLGQSIRLNVVVFNSLIDGWCRLNRFDE 514

Query: 263 LLNVLVFMLQTQCQPDVITLNTVI------NGFCKMGRIEEALKVLNDMVAGKFCAPDAV 316
            L V   M     +PDV T  TV+      + FCK  +    L++ + M   K  A  AV
Sbjct: 515 ALKVFRLMGIYGIKPDVATFTTVMRVSIMEDAFCKHMKPTIGLQLFDLMQRNKISADIAV 574

Query: 317 TFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNC 376
               +I  L    RI++A      ++  +   P IVTYN ++ G   LRR++EA+ +F  
Sbjct: 575 C-NVVIHLLFKCHRIEDASKFFNNLIEGK-MEPDIVTYNTMICGYCSLRRLDEAERIFEL 632

Query: 377 MLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGK 436
           +       ++ T  I+I  LC++N +D A R +  +    +  +   Y  ++    +S  
Sbjct: 633 LKVTPFGPNTVTLTILIHVLCKNNDMDGAIRMFSIMAEKGSKPNAVTYGCLMDWFSKSVD 692

Query: 437 IHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRI 496
           I  +     E+ + G++P+IV Y+++IDG CK     EA  I  +     L PD V + I
Sbjct: 693 IEGSFKLFEEMQEKGISPSIVSYSIIIDGLCKRGRVDEATNIFHQAIDAKLLPDVVAYAI 752

Query: 497 L 497
           L
Sbjct: 753 L 753



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 118/469 (25%), Positives = 206/469 (43%), Gaps = 40/469 (8%)

Query: 31  SYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKL 90
           S+ T+ H   R G  DVA KVFDEM    +      ++VL  G +R R ++ A+V  F  
Sbjct: 101 SFYTIAHVLIRNGMFDVADKVFDEM----ITNRGKDFNVL--GSIRDRSLD-ADVCKF-- 151

Query: 91  WERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC 150
                              L++  CR G V++   I     Q   V  + +   M++SL 
Sbjct: 152 -------------------LMECCCRYGMVDKALEIFVYSTQLGVVIPQDSVYRMLNSLI 192

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIV-HGLCKHGGCMRAYQL----LEEGIQFGY 205
            S R    +     + + G+ PS VS +  V   L   G   +A       +E G + G 
Sbjct: 193 GSDRVDLIADHFDKLCRGGIEPSGVSAHGFVLDALFCKGEVTKALDFHRLVMERGFRVGI 252

Query: 206 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 265
           +      K L         +E A ++L  +L              +   C         +
Sbjct: 253 VSCNKVLKGL-----SVDQIEVASRLLSLVLDCGPAPNVVTFCTLINGFCKRGEMDRAFD 307

Query: 266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 325
           +   M Q   +PD+I  +T+I+G+ K G +    K+ +  +  K    D V F++ I   
Sbjct: 308 LFKVMEQRGIEPDLIAYSTLIDGYFKAGMLGMGHKLFSQALH-KGVKLDVVVFSSTIDVY 366

Query: 326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 385
           +  G +  A +++Y+ M  +G SP +VTY  +++GL +  R+ EA  ++  +L  G+   
Sbjct: 367 VKSGDLATA-SVVYKRMLCQGISPNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPS 425

Query: 386 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY 445
             TY+ +IDG C+   L      ++D++      D  +Y  ++ GL + G +  A+ F  
Sbjct: 426 IVTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGLSKQGLMLHAMRFSV 485

Query: 446 ELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
           +++   +  N+V +N +IDG C+L+   EA ++ R M   G+ PD  T+
Sbjct: 486 KMLGQSIRLNVVVFNSLIDGWCRLNRFDEALKVFRLMGIYGIKPDVATF 534



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/304 (23%), Positives = 131/304 (43%), Gaps = 46/304 (15%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIH------GYCRTGEMDVAYKVFDE 54
           +D  C L+R  EA K+F  M   G  P+V ++TT++        +C+  +  +  ++FD 
Sbjct: 503 IDGWCRLNRFDEALKVFRLMGIYGIKPDVATFTTVMRVSIMEDAFCKHMKPTIGLQLFDL 562

Query: 55  MRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSL 114
           M+   +  +    +V++  + +   +E A+     L E  K E D+   N        SL
Sbjct: 563 MQRNKISADIAVCNVVIHLLFKCHRIEDASKFFNNLIEG-KMEPDIVTYNTMICGYC-SL 620

Query: 115 CREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSL 174
            R      +F + +  P G +         +I  LC++    GA R+  +M ++G  P+ 
Sbjct: 621 RRLDEAERIFELLKVTPFGPNT---VTLTILIHVLCKNNDMDGAIRMFSIMAEKGSKPNA 677

Query: 175 VSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQF 234
           V+Y  ++    K      +++L EE  + G  PS  +Y ++++GLC    +++A      
Sbjct: 678 VTYGCLMDWFSKSVDIEGSFKLFEEMQEKGISPSIVSYSIIIDGLCKRGRVDEA------ 731

Query: 235 MLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGR 294
                        NI+ +A                 +  +  PDV+    +I G+CK+GR
Sbjct: 732 ------------TNIFHQA-----------------IDAKLLPDVVAYAILIRGYCKVGR 762

Query: 295 IEEA 298
           + EA
Sbjct: 763 LVEA 766



 Score = 47.8 bits (112), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 36/70 (51%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   RV EA  +F        +P+VV+Y  LI GYC+ G +  A  +++ M   GV
Sbjct: 719 IDGLCKRGRVDEATNIFHQAIDAKLLPDVVAYAILIRGYCKVGRLVEAALLYEHMLRNGV 778

Query: 61  LPNSLTYSVL 70
            P+ L    L
Sbjct: 779 KPDDLLQRAL 788


>gi|255583247|ref|XP_002532388.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527912|gb|EEF30000.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 676

 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 137/530 (25%), Positives = 254/530 (47%), Gaps = 44/530 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ +C  +++ E  ++  +M  +G VP+V +Y  LI GYC+ G ++ A ++ D M     
Sbjct: 116 INAMCKETKLEEGRRILDEMVEKGLVPSVPTYNALIDGYCKEGMVEAAQEILDLMHSNSC 175

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN  TY+ L+ G  R ++V RA  L+ K+      E  L+ +   + +L+   C+ GY+
Sbjct: 176 NPNERTYNELICGFCRKKNVHRAMALLSKML-----ESRLTPSVVTYNSLIHGQCKIGYL 230

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +  +R+   M +   V +++     ID+LC+ GR   A+ +   ++++G+  + V Y ++
Sbjct: 231 DSAYRLLNLMNENGVVPDQWTYSVFIDTLCKKGRIEEANVLFNSLKEKGIKANEVIYTAL 290

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G CK G    A  LL+  +    LP+  TY  L++GLC E  +++A  +++ M+ K  
Sbjct: 291 IDGYCKAGKMDDANSLLDRMLTEDCLPNSSTYNALIDGLCKERKVQEALLLMESMIQKGL 350

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                   I + A+    +      +L  M+ +  QPDV      I+ FC  G I+EA  
Sbjct: 351 KCTVPTYTILIVAMLKEGDFDYAHRILDQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAED 410

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +++ M+  +   PDA+T+T +I     +G +  A ++L + M   G  P   TY+ +++ 
Sbjct: 411 MMS-MMFERGVMPDALTYTLVIDAYGGLGLLNPAFDVLKR-MFDTGCDPSHHTYSCLIKH 468

Query: 361 L-----------------------------FRLRRVEEAKEVFNCMLGIGVVADSTTYAI 391
           L                             +++ + E A E+F  ML  G   +  TYA 
Sbjct: 469 LLKEELTKKYKNVALCDSIPNVFFADVADVWKMMKFETALELFEKMLEHGCSPNINTYAK 528

Query: 392 VIDGLCESNQLDEAKRFWDDI----VWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYEL 447
           +I GLC+  +L  A++ +D +    V PS      +Y +++   C  G   +AV  +  +
Sbjct: 529 LIIGLCKVGRLGVAQKLFDHMNERGVSPSEA----IYNSLLNCCCELGIYGDAVRLVGAM 584

Query: 448 VDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           ++ G  P +   NV+  G  +   K +A  +   + + G N D V W+IL
Sbjct: 585 MEHGHLPLLESLNVLFCGLYEEGSKEKAKVVFSNLLQCGYNDDEVAWKIL 634



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 144/528 (27%), Positives = 234/528 (44%), Gaps = 46/528 (8%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC + RV E   +F  M+     P V +YT ++H    +G    A  +F EMR  G  PN
Sbjct: 49  LCEVGRVDEGINIFKKMREDDCYPTVRTYTVIVHALFESGRRMEAINLFSEMRERGCEPN 108

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             TY+V++  + +   +E    ++ ++ E+      L  +   +  L+D  C+EG V   
Sbjct: 109 IHTYTVMINAMCKETKLEEGRRILDEMVEK-----GLVPSVPTYNALIDGYCKEGMVEAA 163

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             I + M        E     +I   CR    H A  ++  M +  LTPS+V+YNS++HG
Sbjct: 164 QEILDLMHSNSCNPNERTYNELICGFCRKKNVHRAMALLSKMLESRLTPSVVTYNSLIHG 223

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK G    AY+LL    + G +P + TY V ++ LC +  +E+A  +   +  K     
Sbjct: 224 QCKIGYLDSAYRLLNLMNENGVVPDQWTYSVFIDTLCKKGRIEEANVLFNSLKEKGIKAN 283

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
             I    +   C      +  ++L  ML   C P+  T N +I+G CK  +++EAL ++ 
Sbjct: 284 EVIYTALIDGYCKAGKMDDANSLLDRMLTEDCLPNSSTYNALIDGLCKERKVQEALLLME 343

Query: 304 DMV-AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
            M+  G  C     T+T +I  +L  G    A  +L Q M   GY P +  Y A +    
Sbjct: 344 SMIQKGLKCT--VPTYTILIVAMLKEGDFDYAHRILDQ-MVSSGYQPDVYIYTAFIHAFC 400

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVID---GLCESN-QLDEAKRFWDDIVWPSNI 418
               ++EA+++ + M   GV+ D+ TY +VID   GL   N   D  KR +D    PS  
Sbjct: 401 TRGNIKEAEDMMSMMFERGVMPDALTYTLVIDAYGGLGLLNPAFDVLKRMFDTGCDPS-- 458

Query: 419 HDNYVYAAMIK--------------GLCRS---------------GKIHEAVHFLYELVD 449
             ++ Y+ +IK               LC S                K   A+    ++++
Sbjct: 459 --HHTYSCLIKHLLKEELTKKYKNVALCDSIPNVFFADVADVWKMMKFETALELFEKMLE 516

Query: 450 SGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            G +PNI  Y  +I G CK+     A ++   M + G++P    +  L
Sbjct: 517 HGCSPNINTYAKLIIGLCKVGRLGVAQKLFDHMNERGVSPSEAIYNSL 564



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 121/432 (28%), Positives = 199/432 (46%), Gaps = 37/432 (8%)

Query: 103 NNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVV 162
           N  ++ NL+  LC  G V+E   I + M +            ++ +L  SGR   A  + 
Sbjct: 38  NEVSYTNLIHGLCEVGRVDEGINIFKKMREDDCYPTVRTYTVIVHALFESGRRMEAINLF 97

Query: 163 YVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGE 222
             MR+RG  P++ +Y  +++ +CK        ++L+E ++ G +PS  TY  L++G C E
Sbjct: 98  SEMRERGCEPNIHTYTVMINAMCKETKLEEGRRILDEMVEKGLVPSVPTYNALIDGYCKE 157

Query: 223 SDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITL 282
             +E A+++L  M S       R  N  +   C  KN    + +L  ML+++  P V+T 
Sbjct: 158 GMVEAAQEILDLMHSNSCNPNERTYNELICGFCRKKNVHRAMALLSKMLESRLTPSVVTY 217

Query: 283 NTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVM 342
           N++I+G CK+G ++ A ++LN M       PD  T++  I  L   GRI+EA N+L+  +
Sbjct: 218 NSLIHGQCKIGYLDSAYRLLNLMNENGV-VPDQWTYSVFIDTLCKKGRIEEA-NVLFNSL 275

Query: 343 PQRGYS-----------------------------------PGIVTYNAVLRGLFRLRRV 367
            ++G                                     P   TYNA++ GL + R+V
Sbjct: 276 KEKGIKANEVIYTALIDGYCKAGKMDDANSLLDRMLTEDCLPNSSTYNALIDGLCKERKV 335

Query: 368 EEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAM 427
           +EA  +   M+  G+     TY I+I  + +    D A R  D +V      D Y+Y A 
Sbjct: 336 QEALLLMESMIQKGLKCTVPTYTILIVAMLKEGDFDYAHRILDQMVSSGYQPDVYIYTAF 395

Query: 428 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
           I   C  G I EA   +  + + GV P+ + Y +VID    L +   A+ +L+ M   G 
Sbjct: 396 IHAFCTRGNIKEAEDMMSMMFERGVMPDALTYTLVIDAYGGLGLLNPAFDVLKRMFDTGC 455

Query: 488 NPDAVTWRILDK 499
           +P   T+  L K
Sbjct: 456 DPSHHTYSCLIK 467



 Score =  178 bits (451), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 109/390 (27%), Positives = 188/390 (48%), Gaps = 8/390 (2%)

Query: 120 VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           VN  F +   MP+      E +  ++I  LC  GR      +   MR+    P++ +Y  
Sbjct: 20  VNSAFSVFNMMPKKGCRRNEVSYTNLIHGLCEVGRVDEGINIFKKMREDDCYPTVRTYTV 79

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           IVH L + G  M A  L  E  + G  P+ HTY V++  +C E+ LE+ R++L  M+ K 
Sbjct: 80  IVHALFESGRRMEAINLFSEMRERGCEPNIHTYTVMINAMCKETKLEEGRRILDEMVEKG 139

Query: 240 DVDRTRICNIYLRALC---LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIE 296
            V      N  +   C   +++   E+L++   M    C P+  T N +I GFC+   + 
Sbjct: 140 LVPSVPTYNALIDGYCKEGMVEAAQEILDL---MHSNSCNPNERTYNELICGFCRKKNVH 196

Query: 297 EALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
            A+ +L+ M+  +   P  VT+ ++I G   +G +  A  LL  +M + G  P   TY+ 
Sbjct: 197 RAMALLSKMLESRL-TPSVVTYNSLIHGQCKIGYLDSAYRLL-NLMNENGVVPDQWTYSV 254

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416
            +  L +  R+EEA  +FN +   G+ A+   Y  +IDG C++ ++D+A    D ++   
Sbjct: 255 FIDTLCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGYCKAGKMDDANSLLDRMLTED 314

Query: 417 NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAY 476
            + ++  Y A+I GLC+  K+ EA+  +  ++  G+   +  Y ++I    K      A+
Sbjct: 315 CLPNSSTYNALIDGLCKERKVQEALLLMESMIQKGLKCTVPTYTILIVAMLKEGDFDYAH 374

Query: 477 QILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           +IL +M  +G  PD   +         RGN
Sbjct: 375 RILDQMVSSGYQPDVYIYTAFIHAFCTRGN 404



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 112/403 (27%), Positives = 195/403 (48%), Gaps = 13/403 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   R+ EA+ LF  +K +G   N V YT LI GYC+ G+MD A  + D M     
Sbjct: 256 IDTLCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGYCKAGKMDDANSLLDRMLTEDC 315

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           LPNS TY+ L+ G+ + R V+ A +LM  + ++      L      +  L+ ++ +EG  
Sbjct: 316 LPNSSTYNALIDGLCKERKVQEALLLMESMIQK-----GLKCTVPTYTILIVAMLKEGDF 370

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +   RI + M       + +     I + C  G    A  ++ +M +RG+ P  ++Y  +
Sbjct: 371 DYAHRILDQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAEDMMSMMFERGVMPDALTYTLV 430

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +      G    A+ +L+     G  PS HTY  L++ L  E +L K  K +    S  +
Sbjct: 431 IDAYGGLGLLNPAFDVLKRMFDTGCDPSHHTYSCLIKHLLKE-ELTKKYKNVALCDSIPN 489

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           V    + +++     ++K  T  L +   ML+  C P++ T   +I G CK+GR+  A K
Sbjct: 490 VFFADVADVWK----MMKFETA-LELFEKMLEHGCSPNINTYAKLIIGLCKVGRLGVAQK 544

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           + + M   +  +P    + +++     +G   +A+ L+  +M + G+ P + + N +  G
Sbjct: 545 LFDHM-NERGVSPSEAIYNSLLNCCCELGIYGDAVRLVGAMM-EHGHLPLLESLNVLFCG 602

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLD 403
           L+     E+AK VF+ +L  G   D   + I+IDGL ++   D
Sbjct: 603 LYEEGSKEKAKVVFSNLLQCGYNDDEVAWKILIDGLLKNGLSD 645



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 114/494 (23%), Positives = 214/494 (43%), Gaps = 39/494 (7%)

Query: 4   LCGLSRVGEAHK---LFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +CG  R    H+   L   M      P+VV+Y +LIHG C+ G +D AY++ + M   GV
Sbjct: 186 ICGFCRKKNVHRAMALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNENGV 245

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P+  TYSV +  + +   +E ANVL   L     +E+ +  N   +  L+D  C+ G +
Sbjct: 246 VPDQWTYSVFIDTLCKKGRIEEANVLFNSL-----KEKGIKANEVIYTALIDGYCKAGKM 300

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           ++   + + M     +        +ID LC+  +   A  ++  M ++GL  ++ +Y  +
Sbjct: 301 DDANSLLDRMLTEDCLPNSSTYNALIDGLCKERKVQEALLLMESMIQKGLKCTVPTYTIL 360

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +  + K G    A+++L++ +  GY P  + Y   +   C   ++++A  ++  M  +  
Sbjct: 361 IVAMLKEGDFDYAHRILDQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAEDMMSMMFERGV 420

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQP----------------------D 278
           +       + + A   +       +VL  M  T C P                      +
Sbjct: 421 MPDALTYTLVIDAYGGLGLLNPAFDVLKRMFDTGCDPSHHTYSCLIKHLLKEELTKKYKN 480

Query: 279 VITLNTVINGF-------CKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRI 331
           V   +++ N F        KM + E AL++   M+    C+P+  T+  +I GL  VGR+
Sbjct: 481 VALCDSIPNVFFADVADVWKMMKFETALELFEKMLEHG-CSPNINTYAKLIIGLCKVGRL 539

Query: 332 QEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAI 391
             A  L +  M +RG SP    YN++L     L    +A  +   M+  G +    +  +
Sbjct: 540 GVAQKL-FDHMNERGVSPSEAIYNSLLNCCCELGIYGDAVRLVGAMMEHGHLPLLESLNV 598

Query: 392 VIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 451
           +  GL E    ++AK  + +++      D   +  +I GL ++G        L  +   G
Sbjct: 599 LFCGLYEEGSKEKAKVVFSNLLQCGYNDDEVAWKILIDGLLKNGLSDGCSELLGVMEARG 658

Query: 452 VTPNIVCYNVVIDG 465
              +   Y ++I+G
Sbjct: 659 CQIHPQTYRMLIEG 672



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 64/277 (23%), Positives = 105/277 (37%), Gaps = 59/277 (21%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C    + EA  +   M  RG +P+ ++YT +I  Y   G ++ A+ V   M   G  P+
Sbjct: 399 FCTRGNIKEAEDMMSMMFERGVMPDALTYTLVIDAYGGLGLLNPAFDVLKRMFDTGCDPS 458

Query: 64  SLTYSVLVRGVLRTRDVER----------ANVL---MFKLWERMKEEEDL---------- 100
             TYS L++ +L+    ++           NV    +  +W+ MK E  L          
Sbjct: 459 HHTYSCLIKHLLKEELTKKYKNVALCDSIPNVFFADVADVWKMMKFETALELFEKMLEHG 518

Query: 101 -SVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGAS 159
            S N   +A L+  LC+ G +    ++ + M +      E     +++  C  G    A 
Sbjct: 519 CSPNINTYAKLIIGLCKVGRLGVAQKLFDHMNERGVSPSEAIYNSLLNCCCELGIYGDAV 578

Query: 160 RVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSE---------- 209
           R+V  M + G  P L S N +  GL + G   +A  +    +Q GY   E          
Sbjct: 579 RLVGAMMEHGHLPLLESLNVLFCGLYEEGSKEKAKVVFSNLLQCGYNDDEVAWKILIDGL 638

Query: 210 -------------------------HTYKVLVEGLCG 221
                                     TY++L+EGL G
Sbjct: 639 LKNGLSDGCSELLGVMEARGCQIHPQTYRMLIEGLDG 675


>gi|242067235|ref|XP_002448894.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
 gi|241934737|gb|EES07882.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
          Length = 796

 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 143/527 (27%), Positives = 252/527 (47%), Gaps = 48/527 (9%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           +V +A+ LF DM  +G  PNVV+YT +I G C+   +D A  VF +M   GV PN +TY+
Sbjct: 219 QVDKAYNLFLDMTDQGIPPNVVTYTIVIDGLCKAQVVDRAEGVFQQMIDKGVRPNIVTYT 278

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEE---EDLSVNNAAFANLVDSLCREGYVNEVFR 125
            L+ G L        ++  +K   RM +E     L  +   +  L+D LC++G   E  +
Sbjct: 279 CLIHGYL--------SIGQWKEVVRMLKEMSAHGLEPDCFTYGLLLDYLCKKGKCTEARK 330

Query: 126 IAEDMPQ---------------GKSVNEEFACGH-MIDSLCRSG--RNHGASRVVYV--- 164
           + + M +               G +     +  H  +D +  +G   NH    +V+    
Sbjct: 331 LFDSMIRKGIKPDVSIYGIILHGYATKGALSEMHSFLDLMVGNGISPNHYIFNIVFCAFA 390

Query: 165 --------------MRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
                         MR++GL+P++V+Y +++  LCK G    A     + I  G  P+  
Sbjct: 391 KKAMIGEAMDIFNKMRQQGLSPNVVNYATLIDALCKLGRVDDAELKFNQMINEGVAPNIV 450

Query: 211 TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM 270
            +  LV GLC     EKA ++   M+++         N  +  LC      +   ++  M
Sbjct: 451 VFTSLVYGLCTIDKWEKAGELFFEMVNQGIHPNVVFFNTIMCNLCTEGRVMKAQRLIDLM 510

Query: 271 LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR 330
            +   +PD+I+ N +I G C +G+ +EA K+L+ M++     P+  T+ T++ G    GR
Sbjct: 511 ERVGTRPDIISYNALIRGHCLVGKTDEASKLLDIMLSVGL-KPNECTYNTLLHGYCRDGR 569

Query: 331 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYA 390
           I +A ++ +Q M   G +P +VTYN +L GLF+ RR  EAKE++  M+  G      TY 
Sbjct: 570 IDDAYSV-FQEMLSNGITPVVVTYNTILHGLFKTRRFSEAKELYLNMITSGKQWSIYTYN 628

Query: 391 IVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 450
           I+++GL ++N +DEA + +  +       D   +  MI  L + G+  +A++    +  +
Sbjct: 629 IILNGLSKNNCVDEALKMFQSLCSKDLQVDIITFNIMIGALLKDGRKEDAMNLFATISAN 688

Query: 451 GVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           G+ P++  Y ++ +   +     E   +  EM K+G  P+++    L
Sbjct: 689 GLVPDVTTYRLIAENLIEEGSLEEFDGMFSEMEKSGCAPNSLMLNFL 735



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 128/493 (25%), Positives = 209/493 (42%), Gaps = 32/493 (6%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    V  A  +F  M  +G  PN+V+YT LIHGY   G+     ++  EM   G+
Sbjct: 246 IDGLCKAQVVDRAEGVFQQMIDKGVRPNIVTYTCLIHGYLSIGQWKEVVRMLKEMSAHGL 305

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWER------------------------MKE 96
            P+  TY +L+  + +      A  L   +  +                        M  
Sbjct: 306 EPDCFTYGLLLDYLCKKGKCTEARKLFDSMIRKGIKPDVSIYGIILHGYATKGALSEMHS 365

Query: 97  EEDLSVNNAAFAN------LVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC 150
             DL V N    N      +  +  ++  + E   I   M Q            +ID+LC
Sbjct: 366 FLDLMVGNGISPNHYIFNIVFCAFAKKAMIGEAMDIFNKMRQQGLSPNVVNYATLIDALC 425

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
           + GR   A      M   G+ P++V + S+V+GLC      +A +L  E +  G  P+  
Sbjct: 426 KLGRVDDAELKFNQMINEGVAPNIVVFTSLVYGLCTIDKWEKAGELFFEMVNQGIHPNVV 485

Query: 211 TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM 270
            +  ++  LC E  + KA++++  M            N  +R  CL+    E   +L  M
Sbjct: 486 FFNTIMCNLCTEGRVMKAQRLIDLMERVGTRPDIISYNALIRGHCLVGKTDEASKLLDIM 545

Query: 271 LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR 330
           L    +P+  T NT+++G+C+ GRI++A  V  +M++     P  VT+ TI+ GL    R
Sbjct: 546 LSVGLKPNECTYNTLLHGYCRDGRIDDAYSVFQEMLSNGI-TPVVVTYNTILHGLFKTRR 604

Query: 331 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYA 390
             EA  L Y  M   G    I TYN +L GL +   V+EA ++F  +    +  D  T+ 
Sbjct: 605 FSEAKEL-YLNMITSGKQWSIYTYNIILNGLSKNNCVDEALKMFQSLCSKDLQVDIITFN 663

Query: 391 IVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 450
           I+I  L +  + ++A   +  I     + D   Y  + + L   G + E      E+  S
Sbjct: 664 IMIGALLKDGRKEDAMNLFATISANGLVPDVTTYRLIAENLIEEGSLEEFDGMFSEMEKS 723

Query: 451 GVTPNIVCYNVVI 463
           G  PN +  N ++
Sbjct: 724 GCAPNSLMLNFLV 736



 Score =  151 bits (381), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 112/476 (23%), Positives = 208/476 (43%), Gaps = 39/476 (8%)

Query: 27  PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCG-VLPNSLTYSVLVRGVLRTRDVERANV 85
           P+V +Y+ L+  +CR G ++  +  F  +   G  + + +  + L++G+    D +R   
Sbjct: 92  PDVFTYSILVGCFCRMGRLEHGFAAFGLILKTGWRVNDVVVVNRLLKGLC---DAKRVGE 148

Query: 86  LMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHM 145
            M  L  RM E    + N  ++  L+   C E    E   +   M  G+           
Sbjct: 149 AMGVLLRRMSEL-GCTPNVVSYNTLLKGFCDENRAEEALELLHMMADGQV---------- 197

Query: 146 IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY 205
                                 R   P+LVSYN++++G    G   +AY L  +    G 
Sbjct: 198 ----------------------RSCPPNLVSYNTVINGFFTEGQVDKAYNLFLDMTDQGI 235

Query: 206 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 265
            P+  TY ++++GLC    +++A  V Q M+ K            +     I    E++ 
Sbjct: 236 PPNVVTYTIVIDGLCKAQVVDRAEGVFQQMIDKGVRPNIVTYTCLIHGYLSIGQWKEVVR 295

Query: 266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 325
           +L  M     +PD  T   +++  CK G+  EA K+ + M+  K   PD   +  I+ G 
Sbjct: 296 MLKEMSAHGLEPDCFTYGLLLDYLCKKGKCTEARKLFDSMIR-KGIKPDVSIYGIILHGY 354

Query: 326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 385
              G + E  + L  +M   G SP    +N V     +   + EA ++FN M   G+  +
Sbjct: 355 ATKGALSEMHSFL-DLMVGNGISPNHYIFNIVFCAFAKKAMIGEAMDIFNKMRQQGLSPN 413

Query: 386 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY 445
              YA +ID LC+  ++D+A+  ++ ++      +  V+ +++ GLC   K  +A    +
Sbjct: 414 VVNYATLIDALCKLGRVDDAELKFNQMINEGVAPNIVVFTSLVYGLCTIDKWEKAGELFF 473

Query: 446 ELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLH 501
           E+V+ G+ PN+V +N ++   C      +A +++  M + G  PD +++  L + H
Sbjct: 474 EMVNQGIHPNVVFFNTIMCNLCTEGRVMKAQRLIDLMERVGTRPDIISYNALIRGH 529



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 117/441 (26%), Positives = 192/441 (43%), Gaps = 46/441 (10%)

Query: 10  VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSV 69
           +GEA  +F  M+ +G  PNVV+Y TLI   C+ G +D A   F++M + GV PN + ++ 
Sbjct: 395 IGEAMDIFNKMRQQGLSPNVVNYATLIDALCKLGRVDDAELKFNQMINEGVAPNIVVFTS 454

Query: 70  LVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAED 129
           LV G+      E+A  L F++           VN     N+V       + N +      
Sbjct: 455 LVYGLCTIDKWEKAGELFFEM-----------VNQGIHPNVV-------FFNTIM----- 491

Query: 130 MPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG 189
                       C     +LC  GR   A R++ +M + G  P ++SYN+++ G C  G 
Sbjct: 492 ------------C-----NLCTEGRVMKAQRLIDLMERVGTRPDIISYNALIRGHCLVGK 534

Query: 190 CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNI 249
              A +LL+  +  G  P+E TY  L+ G C +  ++ A  V Q MLS          N 
Sbjct: 535 TDEASKLLDIMLSVGLKPNECTYNTLLHGYCRDGRIDDAYSVFQEMLSNGITPVVVTYNT 594

Query: 250 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK 309
            L  L   +  +E   + + M+ +  Q  + T N ++NG  K   ++EALK+   + + K
Sbjct: 595 ILHGLFKTRRFSEAKELYLNMITSGKQWSIYTYNIILNGLSKNNCVDEALKMFQSLCS-K 653

Query: 310 FCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEE 369
               D +TF  +I  LL  GR ++A+NL +  +   G  P + TY  +   L     +EE
Sbjct: 654 DLQVDIITFNIMIGALLKDGRKEDAMNL-FATISANGLVPDVTTYRLIAENLIEEGSLEE 712

Query: 370 AKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIK 429
              +F+ M   G   +S     ++  L     +  A  +   I   +   +    + +I 
Sbjct: 713 FDGMFSEMEKSGCAPNSLMLNFLVRRLLLRGDISRAGAYLSKIDEKNFSLEASTTSMLIS 772

Query: 430 GLCR----SGKIHEAVHFLYE 446
              R    +  + E  HFL E
Sbjct: 773 LFSREEHQAKSLPEKYHFLNE 793



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 66/220 (30%), Positives = 112/220 (50%), Gaps = 4/220 (1%)

Query: 285 VINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ 344
           ++ G C   R+ EA+ VL   ++   C P+ V++ T++ G  +  R +EAL LL+ +   
Sbjct: 136 LLKGLCDAKRVGEAMGVLLRRMSELGCTPNVVSYNTLLKGFCDENRAEEALELLHMMADG 195

Query: 345 --RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQL 402
             R   P +V+YN V+ G F   +V++A  +F  M   G+  +  TY IVIDGLC++  +
Sbjct: 196 QVRSCPPNLVSYNTVINGFFTEGQVDKAYNLFLDMTDQGIPPNVVTYTIVIDGLCKAQVV 255

Query: 403 DEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVV 462
           D A+  +  ++      +   Y  +I G    G+  E V  L E+   G+ P+   Y ++
Sbjct: 256 DRAEGVFQQMIDKGVRPNIVTYTCLIHGYLSIGQWKEVVRMLKEMSAHGLEPDCFTYGLL 315

Query: 463 IDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
           +D  CK     EA ++   M + G+ PD   + I+  LHG
Sbjct: 316 LDYLCKKGKCTEARKLFDSMIRKGIKPDVSIYGII--LHG 353



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 99/229 (43%), Gaps = 5/229 (2%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C + +  EA KL   M S G  PN  +Y TL+HGYCR G +D AY VF EM   G+ P  
Sbjct: 530 CLVGKTDEASKLLDIMLSVGLKPNECTYNTLLHGYCRDGRIDDAYSVFQEMLSNGITPVV 589

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           +TY+ ++ G+ +TR    A  L   +    K+    + N      +++ L +   V+E  
Sbjct: 590 VTYNTILHGLFKTRRFSEAKELYLNMITSGKQWSIYTYNI-----ILNGLSKNNCVDEAL 644

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
           ++ + +       +      MI +L + GR   A  +   +   GL P + +Y  I   L
Sbjct: 645 KMFQSLCSKDLQVDIITFNIMIGALLKDGRKEDAMNLFATISANGLVPDVTTYRLIAENL 704

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQ 233
            + G       +  E  + G  P+      LV  L    D+ +A   L 
Sbjct: 705 IEEGSLEEFDGMFSEMEKSGCAPNSLMLNFLVRRLLLRGDISRAGAYLS 753



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 17/132 (12%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           R  +A  LF  + + G VP+V +Y  +       G ++    +F EM   G  PNSL  +
Sbjct: 674 RKEDAMNLFATISANGLVPDVTTYRLIAENLIEEGSLEEFDGMFSEMEKSGCAPNSLMLN 733

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
            LVR +L   D+ RA   + K+     +E++ S+  +  + L+    RE +         
Sbjct: 734 FLVRRLLLRGDISRAGAYLSKI-----DEKNFSLEASTTSMLISLFSREEH--------- 779

Query: 129 DMPQGKSVNEEF 140
              Q KS+ E++
Sbjct: 780 ---QAKSLPEKY 788


>gi|302758166|ref|XP_002962506.1| hypothetical protein SELMODRAFT_450632 [Selaginella moellendorffii]
 gi|300169367|gb|EFJ35969.1| hypothetical protein SELMODRAFT_450632 [Selaginella moellendorffii]
          Length = 807

 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 145/517 (28%), Positives = 251/517 (48%), Gaps = 52/517 (10%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           EA++LF +   +  +P+ ++Y  LI G C  G++ +A  +++EM   G+ P  LT   L+
Sbjct: 108 EAYRLFKEKWPQELIPDSITYGILIRGLCNFGKLKLACSLYEEMVDRGLRPVVLTCKFLL 167

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAA-FANLVDSLCREGYVNEVFRIAEDM 130
             + ++ ++E    L  + +E+M      S+  AA +  L+D L R   V+E     E+M
Sbjct: 168 NALCKSGNLE----LALRYFEKMS-----SIPCAATWTILIDGLFRAIRVDEACYYFEEM 218

Query: 131 PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGC 190
               ++   +    +I+ L ++G+   A RV+  M      P+L +Y S++ G CK G  
Sbjct: 219 KH-TAIPNNWTYTVVINGLVKAGKVAEAERVLQEMP----VPTLANYTSVIGGHCKAGDM 273

Query: 191 MRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIY 250
            +AY LLE+  + GY     TY  L+ G C   ++++A ++L+ M S   V      +I 
Sbjct: 274 GKAYHLLEDMKRKGYQGDNLTYNTLIHGHCRLQEIDRAYELLEEMKSNDFVPDIFTYDIL 333

Query: 251 LRALCLIKNPTELLNVL-VFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV-AG 308
           +  LC  K  +E  ++L     +  C P+V++ NT+I+GF K  R+ +A ++  +MV AG
Sbjct: 334 IAGLCRAKRLSEARDLLGTLRNEDDCTPNVVSYNTLIDGFSKAARVNDAYQLFLEMVTAG 393

Query: 309 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE 368
           +   PD VT++T+I GL N GR  EA + L +++ ++   P +  Y++V+ GL R   ++
Sbjct: 394 QH--PDVVTYSTLIRGLCNAGRASEAHSYLEEMVGKK-ILPKVPVYSSVISGLCRAGELD 450

Query: 369 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI 428
            A  VF+ M+  G   +   Y  +I GLC++ +L +AK    ++       D   Y  +I
Sbjct: 451 AASTVFDSMVANGCQPNLAVYNSLIYGLCKTGRLCDAKLRVKEMTERGCSPDGVTYGTLI 510

Query: 429 KGLCRSGKIHEAVHFLYELVDSGV--------------------------------TPNI 456
            GLCR  +  EA       ++ G+                                +P  
Sbjct: 511 VGLCRWSRTDEACDLYVRSLEQGIEISETSCNVVIASLRCLEQAQRVLRVVLATGNSPTA 570

Query: 457 VCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVT 493
             Y  VI+  CK +   EA Q+L +M   G+ PD  T
Sbjct: 571 FFYATVIESLCKENNLAEARQLLEDMIGAGIKPDGST 607



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 135/483 (27%), Positives = 231/483 (47%), Gaps = 50/483 (10%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ L    +V EA ++  +M     VP + +YT++I G+C+ G+M  AY + ++M+  G 
Sbjct: 233 INGLVKAGKVAEAERVLQEMP----VPTLANYTSVIGGHCKAGDMGKAYHLLEDMKRKGY 288

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             ++LTY+ L+ G  R ++++RA    ++L E MK  +                    +V
Sbjct: 289 QGDNLTYNTLIHGHCRLQEIDRA----YELLEEMKSND--------------------FV 324

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKR-GLTPSLVSYNS 179
            ++F    D+              +I  LCR+ R   A  ++  +R     TP++VSYN+
Sbjct: 325 PDIF--TYDI--------------LIAGLCRAKRLSEARDLLGTLRNEDDCTPNVVSYNT 368

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++ G  K      AYQL  E +  G  P   TY  L+ GLC      +A   L+ M+ KK
Sbjct: 369 LIDGFSKAARVNDAYQLFLEMVTAGQHPDVVTYSTLIRGLCNAGRASEAHSYLEEMVGKK 428

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
            + +  + +  +  LC          V   M+   CQP++   N++I G CK GR+ +A 
Sbjct: 429 ILPKVPVYSSVISGLCRAGELDAASTVFDSMVANGCQPNLAVYNSLIYGLCKTGRLCDAK 488

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
             + +M   + C+PD VT+ T+I GL    R  EA +L  + + Q G      + N V+ 
Sbjct: 489 LRVKEMTE-RGCSPDGVTYGTLIVGLCRWSRTDEACDLYVRSLEQ-GIEISETSCNVVIA 546

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
               LR +E+A+ V   +L  G    +  YA VI+ LC+ N L EA++  +D++      
Sbjct: 547 S---LRCLEQAQRVLRVVLATGNSPTAFFYATVIESLCKENNLAEARQLLEDMIGAGIKP 603

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           D     A++  +CR  K   A+ FL E+V  G  P++  Y+ +++   K     EA+ +L
Sbjct: 604 DGSTVDALVGAMCRQDKAVVAMAFLEEMVRLGSKPSVGTYSTLLNALFKAGKPSEAHVVL 663

Query: 480 REM 482
           R +
Sbjct: 664 RRL 666



 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 140/529 (26%), Positives = 232/529 (43%), Gaps = 46/529 (8%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C    +G+A+ L  DMK +G+  + ++Y TLIHG+CR  E+D AY++ +EM+    +P+ 
Sbjct: 268 CKAGDMGKAYHLLEDMKRKGYQGDNLTYNTLIHGHCRLQEIDRAYELLEEMKSNDFVPDI 327

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDS----------- 113
            TY +L+ G+ R + +  A  L+  L    + E+D + N  ++  L+D            
Sbjct: 328 FTYDILIAGLCRAKRLSEARDLLGTL----RNEDDCTPNVVSYNTLIDGFSKAARVNDAY 383

Query: 114 ------------------------LCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSL 149
                                   LC  G  +E     E+M   K + +      +I  L
Sbjct: 384 QLFLEMVTAGQHPDVVTYSTLIRGLCNAGRASEAHSYLEEMVGKKILPKVPVYSSVISGL 443

Query: 150 CRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSE 209
           CR+G    AS V   M   G  P+L  YNS+++GLCK G    A   ++E  + G  P  
Sbjct: 444 CRAGELDAASTVFDSMVANGCQPNLAVYNSLIYGLCKTGRLCDAKLRVKEMTERGCSPDG 503

Query: 210 HTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVF 269
            TY  L+ GLC  S  ++A  +    L +        CN+ + +L  ++    +L V+  
Sbjct: 504 VTYGTLIVGLCRWSRTDEACDLYVRSLEQGIEISETSCNVVIASLRCLEQAQRVLRVV-- 561

Query: 270 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG 329
            L T   P      TVI   CK   + EA ++L DM+ G    PD  T   ++  +    
Sbjct: 562 -LATGNSPTAFFYATVIESLCKENNLAEARQLLEDMI-GAGIKPDGSTVDALVGAMCRQD 619

Query: 330 RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG-IGVVADSTT 388
           +   A+  L + M + G  P + TY+ +L  LF+  +  EA  V   ++       D   
Sbjct: 620 KAVVAMAFLEE-MVRLGSKPSVGTYSTLLNALFKAGKPSEAHVVLRRLISHTSCFPDELW 678

Query: 389 YAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELV 448
           Y  +I      +Q++EA+    ++     I     Y  ++KGL R+  +      L E+ 
Sbjct: 679 YVGLIAAYSNQDQVEEARNVLQELKSKWGIQSIVAYNTLLKGLFRTRNLQMVYELLREMK 738

Query: 449 DSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            +    N   +N++I G C+L     A ++L EM+K  L P A   + L
Sbjct: 739 RNEFVVNEATFNILIQGFCRLGQTDRAVRVLSEMKKV-LTPSAAIIKFL 786



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 117/432 (27%), Positives = 208/432 (48%), Gaps = 14/432 (3%)

Query: 66  TYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFR 125
           TY+     ++RT   E A  L  + W      ++L  ++  +  L+  LC  G +     
Sbjct: 92  TYNCFYEALIRTGQCEEAYRLFKEKWP-----QELIPDSITYGILIRGLCNFGKLKLACS 146

Query: 126 IAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLC 185
           + E+M           C  ++++LC+SG    A R      K    P   ++  ++ GL 
Sbjct: 147 LYEEMVDRGLRPVVLTCKFLLNALCKSGNLELALRY---FEKMSSIPCAATWTILIDGLF 203

Query: 186 KHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTR 245
           +      A    EE ++   +P+  TY V++ GL     + +A +VLQ M      + T 
Sbjct: 204 RAIRVDEACYYFEE-MKHTAIPNNWTYTVVINGLVKAGKVAEAERVLQEMPVPTLANYTS 262

Query: 246 ICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM 305
           +   +    C   +  +  ++L  M +   Q D +T NT+I+G C++  I+ A ++L +M
Sbjct: 263 VIGGH----CKAGDMGKAYHLLEDMKRKGYQGDNLTYNTLIHGHCRLQEIDRAYELLEEM 318

Query: 306 VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLR 365
            +  F  PD  T+  +I GL    R+ EA +LL  +  +   +P +V+YN ++ G  +  
Sbjct: 319 KSNDF-VPDIFTYDILIAGLCRAKRLSEARDLLGTLRNEDDCTPNVVSYNTLIDGFSKAA 377

Query: 366 RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYA 425
           RV +A ++F  M+  G   D  TY+ +I GLC + +  EA  + +++V    +    VY+
Sbjct: 378 RVNDAYQLFLEMVTAGQHPDVVTYSTLIRGLCNAGRASEAHSYLEEMVGKKILPKVPVYS 437

Query: 426 AMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN 485
           ++I GLCR+G++  A      +V +G  PN+  YN +I G CK     +A   ++EM + 
Sbjct: 438 SVISGLCRAGELDAASTVFDSMVANGCQPNLAVYNSLIYGLCKTGRLCDAKLRVKEMTER 497

Query: 486 GLNPDAVTWRIL 497
           G +PD VT+  L
Sbjct: 498 GCSPDGVTYGTL 509



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 109/413 (26%), Positives = 197/413 (47%), Gaps = 11/413 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D     +RV +A++LF +M + G  P+VV+Y+TLI G C  G    A+   +EM    +
Sbjct: 370 IDGFSKAARVNDAYQLFLEMVTAGQHPDVVTYSTLIRGLCNAGRASEAHSYLEEMVGKKI 429

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           LP    YS ++ G+ R  +++ A+ +   +            N A + +L+  LC+ G +
Sbjct: 430 LPKVPVYSSVISGLCRAGELDAASTVFDSMV-----ANGCQPNLAVYNSLIYGLCKTGRL 484

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +     ++M +     +    G +I  LCR  R   A  +     ++G+  S  S N +
Sbjct: 485 CDAKLRVKEMTERGCSPDGVTYGTLIVGLCRWSRTDEACDLYVRSLEQGIEISETSCNVV 544

Query: 181 VHGLCKHGGCM-RAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           +  L     C+ +A ++L   +  G  P+   Y  ++E LC E++L +AR++L+ M+   
Sbjct: 545 IASL----RCLEQAQRVLRVVLATGNSPTAFFYATVIESLCKENNLAEARQLLEDMIGAG 600

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                   +  + A+C        +  L  M++   +P V T +T++N   K G+  EA 
Sbjct: 601 IKPDGSTVDALVGAMCRQDKAVVAMAFLEEMVRLGSKPSVGTYSTLLNALFKAGKPSEAH 660

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
            VL  +++   C PD + +  +I    N  +++EA N+L ++  + G    IV YN +L+
Sbjct: 661 VVLRRLISHTSCFPDELWYVGLIAAYSNQDQVEEARNVLQELKSKWGIQ-SIVAYNTLLK 719

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI 412
           GLFR R ++   E+   M     V +  T+ I+I G C   Q D A R   ++
Sbjct: 720 GLFRTRNLQMVYELLREMKRNEFVVNEATFNILIQGFCRLGQTDRAVRVLSEM 772



 Score = 40.4 bits (93), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 1/94 (1%)

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI 478
           H  + Y    + L R+G+  EA     E     + P+ + Y ++I G C     + A  +
Sbjct: 88  HTVHTYNCFYEALIRTGQCEEAYRLFKEKWPQELIPDSITYGILIRGLCNFGKLKLACSL 147

Query: 479 LREMRKNGLNPDAVTWRILDKLHGNRGN-DFGLR 511
             EM   GL P  +T + L       GN +  LR
Sbjct: 148 YEEMVDRGLRPVVLTCKFLLNALCKSGNLELALR 181


>gi|255556189|ref|XP_002519129.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541792|gb|EEF43340.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 643

 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 130/490 (26%), Positives = 235/490 (47%), Gaps = 10/490 (2%)

Query: 8   SRVGEAHKLFFDM---KSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           SRV     +F ++   + R    + + +  LI   C     D A++ FD M+  GV+P  
Sbjct: 142 SRVAGVKDVFHELAITRDRLGTKSSIVFDMLIRACCELKRGDDAFECFDMMKEKGVVPKI 201

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
            T++ ++   L+    E   VL  +++ R+K +  +      F  +++ LC+EG + +  
Sbjct: 202 ETFNAMLSLFLKLNQTETVWVLYAEMF-RLKIKSTV----YTFNIMINVLCKEGKLKKAK 256

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
                M              +I   C  GR  GA  V+ +M+ RG+ P   +Y S++ G+
Sbjct: 257 DFIGSMENLGVKPNVVTYNTVIHGYCSRGRVEGARMVLDIMKNRGVEPDSYTYGSLISGM 316

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
           CK G    A  +LE+  + G LP+  TY  L++G C + DL KA      M+ +  +   
Sbjct: 317 CKGGKLEEASGILEKMKEIGLLPTAVTYNTLIDGYCNKGDLVKAFGYRDEMVRRAILPTV 376

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
              N+ + AL L     E   ++  M  +   PD IT N +ING+C+ G  ++A  + ++
Sbjct: 377 STYNLLIHALFLEGKMDEADGMIKDMGDSGIVPDSITYNILINGYCRCGNAKKAFNLHDE 436

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
           M++ K   P  VT+T++I+ L    R++ A +L  +++ + G SP ++ +NA++ G    
Sbjct: 437 MIS-KGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKII-REGASPDLIMFNALIDGHCAN 494

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY 424
             ++ A  +   M    +V D  TY  ++ G C   +++EA+    ++       D+  Y
Sbjct: 495 GNLDRAFALLKEMDKRNIVPDEVTYNTLMQGRCREGKVEEARELLKEMKRRGIRPDHISY 554

Query: 425 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484
             +I G  + G I++A     E++  G  P ++ YN +I G CK      A ++L+EM  
Sbjct: 555 NTLISGYSKRGDINDAFTIRDEMLSIGFNPTLLTYNALIQGLCKNQQGDLAEELLKEMVS 614

Query: 485 NGLNPDAVTW 494
            G+ PD  T+
Sbjct: 615 KGITPDDSTY 624



 Score =  168 bits (425), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 110/402 (27%), Positives = 208/402 (51%), Gaps = 7/402 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   ++ +A      M++ G  PNVV+Y T+IHGYC  G ++ A  V D M++ GV P+
Sbjct: 246 LCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRGRVEGARMVLDIMKNRGVEPD 305

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           S TY  L+ G+ +   +E A+ ++    E+MK E  L      +  L+D  C +G + + 
Sbjct: 306 SYTYGSLISGMCKGGKLEEASGIL----EKMK-EIGLLPTAVTYNTLIDGYCNKGDLVKA 360

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           F   ++M +   +        +I +L   G+   A  ++  M   G+ P  ++YN +++G
Sbjct: 361 FGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGIVPDSITYNILING 420

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            C+ G   +A+ L +E I  G  P+  TY  L+  L   + ++ A  + + ++ +     
Sbjct: 421 YCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKIIREGASPD 480

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
             + N  +   C   N      +L  M +    PD +T NT++ G C+ G++EEA ++L 
Sbjct: 481 LIMFNALIDGHCANGNLDRAFALLKEMDKRNIVPDEVTYNTLMQGRCREGKVEEARELLK 540

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           +M   +   PD +++ T+I G    G I +A  +  +++   G++P ++TYNA+++GL +
Sbjct: 541 EM-KRRGIRPDHISYNTLISGYSKRGDINDAFTIRDEML-SIGFNPTLLTYNALIQGLCK 598

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA 405
            ++ + A+E+   M+  G+  D +TY  +I+G+ + +   EA
Sbjct: 599 NQQGDLAEELLKEMVSKGITPDDSTYFSLIEGIGKVDDSSEA 640



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 110/474 (23%), Positives = 221/474 (46%), Gaps = 48/474 (10%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C L R  +A + F  MK +G VP + ++  ++  + +  + +  + ++ EM    +    
Sbjct: 177 CELKRGDDAFECFDMMKEKGVVPKIETFNAMLSLFLKLNQTETVWVLYAEMFRLKIKSTV 236

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSV--NNAAFANLVDSLCREGYVNE 122
            T+++++  + +   +++A   +  +       E+L V  N   +  ++   C  G V E
Sbjct: 237 YTFNIMINVLCKEGKLKKAKDFIGSM-------ENLGVKPNVVTYNTVIHGYCSRGRV-E 288

Query: 123 VFRIAEDMPQGKSVN-EEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
             R+  D+ + + V  + +  G +I  +C+ G+   AS ++  M++ GL P+ V+YN+++
Sbjct: 289 GARMVLDIMKNRGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLI 348

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
            G C  G  ++A+   +E ++   LP+  TY +L+  L  E  +++A  +++ M     V
Sbjct: 349 DGYCNKGDLVKAFGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGIV 408

Query: 242 DRTRICNIYLRALCLIKNPTELLNV------------------LVFMLQTQ--------- 274
             +   NI +   C   N  +  N+                  L+++L  +         
Sbjct: 409 PDSITYNILINGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDL 468

Query: 275 --------CQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
                     PD+I  N +I+G C  G ++ A  +L +M   +   PD VT+ T++ G  
Sbjct: 469 FEKIIREGASPDLIMFNALIDGHCANGNLDRAFALLKEM-DKRNIVPDEVTYNTLMQGRC 527

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
             G+++EA  LL + M +RG  P  ++YN ++ G  +   + +A  + + ML IG     
Sbjct: 528 REGKVEEARELLKE-MKRRGIRPDHISYNTLISGYSKRGDINDAFTIRDEMLSIGFNPTL 586

Query: 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEA 440
            TY  +I GLC++ Q D A+    ++V      D+  Y ++I+G+ +     EA
Sbjct: 587 LTYNALIQGLCKNQQGDLAEELLKEMVSKGITPDDSTYFSLIEGIGKVDDSSEA 640



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/291 (28%), Positives = 145/291 (49%), Gaps = 4/291 (1%)

Query: 208 SEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVL 267
           S   + +L+   C     + A +    M  K  V +    N  L +L L  N TE + VL
Sbjct: 165 SSIVFDMLIRACCELKRGDDAFECFDMMKEKGVVPKIETFNAML-SLFLKLNQTETVWVL 223

Query: 268 -VFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
              M + + +  V T N +IN  CK G++++A   +  M       P+ VT+ T+I G  
Sbjct: 224 YAEMFRLKIKSTVYTFNIMINVLCKEGKLKKAKDFIGSM-ENLGVKPNVVTYNTVIHGYC 282

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
           + GR++ A  ++  +M  RG  P   TY +++ G+ +  ++EEA  +   M  IG++  +
Sbjct: 283 SRGRVEGA-RMVLDIMKNRGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTA 341

Query: 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE 446
            TY  +IDG C    L +A  + D++V  + +     Y  +I  L   GK+ EA   + +
Sbjct: 342 VTYNTLIDGYCNKGDLVKAFGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEADGMIKD 401

Query: 447 LVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           + DSG+ P+ + YN++I+G C+    ++A+ +  EM   G+ P  VT+  L
Sbjct: 402 MGDSGIVPDSITYNILINGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSL 452



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 56/99 (56%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M   C   +V EA +L  +MK RG  P+ +SY TLI GY + G+++ A+ + DEM   G 
Sbjct: 523 MQGRCREGKVEEARELLKEMKRRGIRPDHISYNTLISGYSKRGDINDAFTIRDEMLSIGF 582

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEED 99
            P  LTY+ L++G+ + +  + A  L+ ++  +    +D
Sbjct: 583 NPTLLTYNALIQGLCKNQQGDLAEELLKEMVSKGITPDD 621



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/186 (22%), Positives = 76/186 (40%), Gaps = 40/186 (21%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C    +  A  L  +M  R  VP+ V+Y TL+ G CR G+++ A ++  EM+  G+
Sbjct: 488 IDGHCANGNLDRAFALLKEMDKRNIVPDEVTYNTLMQGRCREGKVEEARELLKEMKRRGI 547

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ ++Y+ L+ G                                          + G +
Sbjct: 548 RPDHISYNTLISGY----------------------------------------SKRGDI 567

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           N+ F I ++M              +I  LC++ +   A  ++  M  +G+TP   +Y S+
Sbjct: 568 NDAFTIRDEMLSIGFNPTLLTYNALIQGLCKNQQGDLAEELLKEMVSKGITPDDSTYFSL 627

Query: 181 VHGLCK 186
           + G+ K
Sbjct: 628 IEGIGK 633



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 3/84 (3%)

Query: 4   LCGLSRVGEAHKLFF---DMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           + G S+ G+ +  F    +M S G  P +++Y  LI G C+  + D+A ++  EM   G+
Sbjct: 558 ISGYSKRGDINDAFTIRDEMLSIGFNPTLLTYNALIQGLCKNQQGDLAEELLKEMVSKGI 617

Query: 61  LPNSLTYSVLVRGVLRTRDVERAN 84
            P+  TY  L+ G+ +  D   A+
Sbjct: 618 TPDDSTYFSLIEGIGKVDDSSEAS 641


>gi|357442883|ref|XP_003591719.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|357501105|ref|XP_003620841.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480767|gb|AES61970.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495856|gb|AES77059.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 524

 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 131/484 (27%), Positives = 234/484 (48%), Gaps = 27/484 (5%)

Query: 13  AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVR 72
           A  L+  ++     P++V++ T+I+ YC  GEMD A+ V  ++   G  P+++T + L++
Sbjct: 67  AISLYHRLQLNAITPSIVTFNTVINCYCHLGEMDFAFSVLAKILKMGYHPDTITLTTLIK 126

Query: 73  GVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQ 132
           G+     V  A      +  R        +N  ++  L++ LC+ G      ++   +  
Sbjct: 127 GLCLNGKVHEALHFHDHVIAR-----GFRLNEVSYGILINGLCKMGETRAALQVLRKI-D 180

Query: 133 GKSVNEEFAC-GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCM 191
           GK VN        +IDSLC+      A  +   M  + ++P +V+++++++G C  G   
Sbjct: 181 GKLVNTNVVMYSTIIDSLCKEKLVTEAYELYSQMIVKKVSPDVVTFSALIYGFCMVGQFK 240

Query: 192 RAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYL 251
            A+ L  E +     P   T+ +LV+ LC E   ++ + VL  M+  K+V++        
Sbjct: 241 EAFGLFHEMVLTNINPDVCTFNILVDALCKEGSTKETKNVLAVMM--KEVNQ-------- 290

Query: 252 RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC 311
                +     + N++    + +  PDV +   +I   CK+  ++EAL + N+M   K  
Sbjct: 291 -----VNKAKHVFNIIG---KRRVTPDVHSYTIIIKRLCKIKMVDEALSLFNEMRC-KGI 341

Query: 312 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK 371
            PD VT++++I GL    RI  A  LL Q M  RG    ++TY + L  L +  +V++A 
Sbjct: 342 TPDKVTYSSLIDGLCKSERISHAWELLDQ-MHARGQPADVITYTSFLHALCKNHQVDKAV 400

Query: 372 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 431
            +   +   G+  +  TY I+IDGLC+  + + A+  + D++        + Y  MI GL
Sbjct: 401 ALVKKIKDQGIQPNINTYNILIDGLCKEGRFENAQVIFQDLLIKGYKVTVWTYNIMINGL 460

Query: 432 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 491
           C  G   EA+  L ++ D+G TP++V Y  +I    K     +A ++LREM   GL  + 
Sbjct: 461 CLEGLFDEAMTLLEKMEDNGCTPDVVTYETIIRALFKNDENHKAEKLLREMIARGLLEEK 520

Query: 492 VTWR 495
           V  R
Sbjct: 521 VEIR 524



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 98/369 (26%), Positives = 178/369 (48%), Gaps = 17/369 (4%)

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
           +I+  C  G    A  V+  + K G  P  ++  +++ GLC +G    A    +  I  G
Sbjct: 89  VINCYCHLGEMDFAFSVLAKILKMGYHPDTITLTTLIKGLCLNGKVHEALHFHDHVIARG 148

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL 264
           +  +E +Y +L+ GLC   +   A +VL+ +  K       + +  + +LC  K  TE  
Sbjct: 149 FRLNEVSYGILINGLCKMGETRAALQVLRKIDGKLVNTNVVMYSTIIDSLCKEKLVTEAY 208

Query: 265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 324
            +   M+  +  PDV+T + +I GFC +G+ +EA  + ++MV      PD  TF  ++  
Sbjct: 209 ELYSQMIVKKVSPDVVTFSALIYGFCMVGQFKEAFGLFHEMVLTNI-NPDVCTFNILVDA 267

Query: 325 LLNVGRIQEALNLL----------------YQVMPQRGYSPGIVTYNAVLRGLFRLRRVE 368
           L   G  +E  N+L                + ++ +R  +P + +Y  +++ L +++ V+
Sbjct: 268 LCKEGSTKETKNVLAVMMKEVNQVNKAKHVFNIIGKRRVTPDVHSYTIIIKRLCKIKMVD 327

Query: 369 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI 428
           EA  +FN M   G+  D  TY+ +IDGLC+S ++  A    D +       D   Y + +
Sbjct: 328 EALSLFNEMRCKGITPDKVTYSSLIDGLCKSERISHAWELLDQMHARGQPADVITYTSFL 387

Query: 429 KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLN 488
             LC++ ++ +AV  + ++ D G+ PNI  YN++IDG CK      A  I +++   G  
Sbjct: 388 HALCKNHQVDKAVALVKKIKDQGIQPNINTYNILIDGLCKEGRFENAQVIFQDLLIKGYK 447

Query: 489 PDAVTWRIL 497
               T+ I+
Sbjct: 448 VTVWTYNIM 456



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 89/319 (27%), Positives = 153/319 (47%), Gaps = 12/319 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    V EA++L+  M  +   P+VV+++ LI+G+C  G+   A+ +F EM    +
Sbjct: 195 IDSLCKEKLVTEAYELYSQMIVKKVSPDVVTFSALIYGFCMVGQFKEAFGLFHEMVLTNI 254

Query: 61  LPNSLTYSVLVRGVLRTRDV-ERANVLMFKLWERMKEEEDLSVNNA-----------AFA 108
            P+  T+++LV  + +     E  NVL   + E  +  +   V N            ++ 
Sbjct: 255 NPDVCTFNILVDALCKEGSTKETKNVLAVMMKEVNQVNKAKHVFNIIGKRRVTPDVHSYT 314

Query: 109 NLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKR 168
            ++  LC+   V+E   +  +M       ++     +ID LC+S R   A  ++  M  R
Sbjct: 315 IIIKRLCKIKMVDEALSLFNEMRCKGITPDKVTYSSLIDGLCKSERISHAWELLDQMHAR 374

Query: 169 GLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKA 228
           G    +++Y S +H LCK+    +A  L+++    G  P+ +TY +L++GLC E   E A
Sbjct: 375 GQPADVITYTSFLHALCKNHQVDKAVALVKKIKDQGIQPNINTYNILIDGLCKEGRFENA 434

Query: 229 RKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVING 288
           + + Q +L K         NI +  LCL     E + +L  M    C PDV+T  T+I  
Sbjct: 435 QVIFQDLLIKGYKVTVWTYNIMINGLCLEGLFDEAMTLLEKMEDNGCTPDVVTYETIIRA 494

Query: 289 FCKMGRIEEALKVLNDMVA 307
             K     +A K+L +M+A
Sbjct: 495 LFKNDENHKAEKLLREMIA 513



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 104/399 (26%), Positives = 178/399 (44%), Gaps = 24/399 (6%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   +V EA      + +RG   N VSY  LI+G C+ GE   A +V  ++    V  N
Sbjct: 128 LCLNGKVHEALHFHDHVIARGFRLNEVSYGILINGLCKMGETRAALQVLRKIDGKLVNTN 187

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            + YS ++  + + + V  A    ++L+ +M  ++ +S +   F+ L+   C  G   E 
Sbjct: 188 VVMYSTIIDSLCKEKLVTEA----YELYSQMIVKK-VSPDVVTFSALIYGFCMVGQFKEA 242

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMR----------------- 166
           F +  +M       +      ++D+LC+ G       V+ VM                  
Sbjct: 243 FGLFHEMVLTNINPDVCTFNILVDALCKEGSTKETKNVLAVMMKEVNQVNKAKHVFNIIG 302

Query: 167 KRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLE 226
           KR +TP + SY  I+  LCK      A  L  E    G  P + TY  L++GLC    + 
Sbjct: 303 KRRVTPDVHSYTIIIKRLCKIKMVDEALSLFNEMRCKGITPDKVTYSSLIDGLCKSERIS 362

Query: 227 KARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVI 286
            A ++L  M ++           +L ALC      + + ++  +     QP++ T N +I
Sbjct: 363 HAWELLDQMHARGQPADVITYTSFLHALCKNHQVDKAVALVKKIKDQGIQPNINTYNILI 422

Query: 287 NGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
           +G CK GR E A  +  D++   +      T+  +I GL   G   EA+ LL + M   G
Sbjct: 423 DGLCKEGRFENAQVIFQDLLIKGY-KVTVWTYNIMINGLCLEGLFDEAMTLL-EKMEDNG 480

Query: 347 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 385
            +P +VTY  ++R LF+     +A+++   M+  G++ +
Sbjct: 481 CTPDVVTYETIIRALFKNDENHKAEKLLREMIARGLLEE 519



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 51/102 (50%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   R   A  +F D+  +G+   V +Y  +I+G C  G  D A  + ++M   G 
Sbjct: 422 IDGLCKEGRFENAQVIFQDLLIKGYKVTVWTYNIMINGLCLEGLFDEAMTLLEKMEDNGC 481

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSV 102
            P+ +TY  ++R + +  +  +A  L+ ++  R   EE + +
Sbjct: 482 TPDVVTYETIIRALFKNDENHKAEKLLREMIARGLLEEKVEI 523



 Score = 43.5 bits (101), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 415 PSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKRE 474
           PS I  N +  +++K    +  I  A+   + L  + +TP+IV +N VI+  C L     
Sbjct: 44  PSIIEFNKILGSLVKSNNNNYPI--AISLYHRLQLNAITPSIVTFNTVINCYCHLGEMDF 101

Query: 475 AYQILREMRKNGLNPDAVTWRILDK 499
           A+ +L ++ K G +PD +T   L K
Sbjct: 102 AFSVLAKILKMGYHPDTITLTTLIK 126


>gi|356561679|ref|XP_003549107.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g12775, mitochondrial-like [Glycine max]
          Length = 750

 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 133/517 (25%), Positives = 239/517 (46%), Gaps = 28/517 (5%)

Query: 3   QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
            LC    +G+A  L+ +M  +G  PNVV+Y  L++G+C  G +  A+ + +EM+   + P
Sbjct: 212 SLCKNKLLGDACDLYSEMIVKGISPNVVTYNALVYGFCIMGHLKEAFSLLNEMKLKNINP 271

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           +  T++ L+  + +   ++ A +++  + +   + + ++ N+     L+D       V  
Sbjct: 272 DVCTFNTLIDALGKEGKMKAAKIVLAVMMKACIKPDVVTYNS-----LIDGYFFLNKVKN 326

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
              +   M Q            MID LC+      A  +   M+ + + P +V+Y S++ 
Sbjct: 327 AKYVFYSMAQSGVTPNVRTYTTMIDGLCKEKMVDEAMSLFEEMKYKNMIPDIVTYTSLID 386

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           GLCK+    RA  L ++  + G  P  ++Y +L++ LC    LE A++  Q +L K    
Sbjct: 387 GLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCKGGRLENAKEFFQRLLVKGYHL 446

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
             +  N+ +  LC      E +++   M    C PD IT  T+I    +    ++A K+L
Sbjct: 447 NVQTYNVMINGLCKADLFGEAMDLKSKMEGKGCMPDAITFKTIICALFEKDENDKAEKIL 506

Query: 303 NDMVA---------------------GKFC-APDAVTFTTIIFGLLNVGRIQEALNLLYQ 340
            +M+A                      K C  PD VT+ T++ G   V  ++ A  + Y 
Sbjct: 507 REMIARGLQEARKVRLKEAKIVLAVMTKACIKPDVVTYGTLMDGYFLVNELKHAKYVFYS 566

Query: 341 VMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN 400
            M Q G +P +  Y  ++ GL + + V+EA  +F  M    +  +  TY  +ID LC+++
Sbjct: 567 -MAQMGVTPNVQCYTIMIDGLCKKKTVDEAMSLFEEMKHKNMFPNIVTYTSLIDALCKNH 625

Query: 401 QLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYN 460
            L+ A     ++       D Y Y  ++ GLC+SG++  A      L+  G   N+  Y 
Sbjct: 626 HLERAIALLKEMKEHGIQPDVYSYTILLDGLCKSGRLEGAKEIFQRLLVKGYHLNVQVYT 685

Query: 461 VVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            +I+  CK  +  EA  +  +M   G  PDAVT+ I+
Sbjct: 686 AMINELCKAGLFDEALDLQXKMEDKGCMPDAVTFDII 722



 Score =  192 bits (487), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 143/509 (28%), Positives = 234/509 (45%), Gaps = 37/509 (7%)

Query: 6   GLSRVGEAH---KLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           GL + GE     +L   ++     P+VV Y T+IH  C+   +  A  ++ EM   G+ P
Sbjct: 177 GLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIIHSLCKNKLLGDACDLYSEMIVKGISP 236

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           N +TY+ LV G      ++ A    F L   MK + +++ +   F  L+D+L +EG +  
Sbjct: 237 NVVTYNALVYGFCIMGHLKEA----FSLLNEMKLK-NINPDVCTFNTLIDALGKEGKMKA 291

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
              +   M +     +      +ID      +   A  V Y M + G+TP++ +Y +++ 
Sbjct: 292 AKIVLAVMMKACIKPDVVTYNSLIDGYFFLNKVKNAKYVFYSMAQSGVTPNVRTYTTMID 351

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           GLCK      A  L EE      +P   TY  L++GLC    LE+A  + + M  +    
Sbjct: 352 GLCKEKMVDEAMSLFEEMKYKNMIPDIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQP 411

Query: 243 RTRICNIYLRALCL---IKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                 I L ALC    ++N  E    L   L      +V T N +ING CK     EA+
Sbjct: 412 DVYSYTILLDALCKGGRLENAKEFFQRL---LVKGYHLNVQTYNVMINGLCKADLFGEAM 468

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLN--------------VGR-IQEA-------LNL 337
            + + M  GK C PDA+TF TII  L                + R +QEA         +
Sbjct: 469 DLKSKM-EGKGCMPDAITFKTIICALFEKDENDKAEKILREMIARGLQEARKVRLKEAKI 527

Query: 338 LYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLC 397
           +  VM +    P +VTY  ++ G F +  ++ AK VF  M  +GV  +   Y I+IDGLC
Sbjct: 528 VLAVMTKACIKPDVVTYGTLMDGYFLVNELKHAKYVFYSMAQMGVTPNVQCYTIMIDGLC 587

Query: 398 ESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIV 457
           +   +DEA   ++++   +   +   Y ++I  LC++  +  A+  L E+ + G+ P++ 
Sbjct: 588 KKKTVDEAMSLFEEMKHKNMFPNIVTYTSLIDALCKNHHLERAIALLKEMKEHGIQPDVY 647

Query: 458 CYNVVIDGACKLSMKREAYQILREMRKNG 486
            Y +++DG CK      A +I + +   G
Sbjct: 648 SYTILLDGLCKSGRLEGAKEIFQRLLVKG 676



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 103/388 (26%), Positives = 188/388 (48%), Gaps = 37/388 (9%)

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
           +++  C       A  V+  + KRG  P+ ++ N+++ GLC  G   +A    ++ +  G
Sbjct: 104 LMNCFCHLTHITFAFSVLANILKRGYHPNAITLNTLIKGLCFRGEIKKALYFHDQVVAQG 163

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL 264
           +  ++ +Y+ L+ GLC   + +   ++L+ +          + N  + +LC  K   +  
Sbjct: 164 FQLNQVSYRTLINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIIHSLCKNKLLGDAC 223

Query: 265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 324
           ++   M+     P+V+T N ++ GFC MG ++EA  +LN+M   K   PD  TF T+I  
Sbjct: 224 DLYSEMIVKGISPNVVTYNALVYGFCIMGHLKEAFSLLNEMKL-KNINPDVCTFNTLIDA 282

Query: 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 384
           L   G+++ A  ++  VM +    P +VTYN+++ G F L +V+ AK VF  M   GV  
Sbjct: 283 LGKEGKMKAA-KIVLAVMMKACIKPDVVTYNSLIDGYFFLNKVKNAKYVFYSMAQSGVTP 341

Query: 385 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFL 444
           +  TY  +IDGLC+   +DEA   ++++ + + I D   Y ++I GLC++  +  A+   
Sbjct: 342 NVRTYTTMIDGLCKEKMVDEAMSLFEEMKYKNMIPDIVTYTSLIDGLCKNHHLERAIALC 401

Query: 445 YELVDSGVTP-----------------------------------NIVCYNVVIDGACKL 469
            ++ + G+ P                                   N+  YNV+I+G CK 
Sbjct: 402 KKMKEQGIQPDVYSYTILLDALCKGGRLENAKEFFQRLLVKGYHLNVQTYNVMINGLCKA 461

Query: 470 SMKREAYQILREMRKNGLNPDAVTWRIL 497
            +  EA  +  +M   G  PDA+T++ +
Sbjct: 462 DLFGEAMDLKSKMEGKGCMPDAITFKTI 489



 Score =  161 bits (408), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 121/477 (25%), Positives = 221/477 (46%), Gaps = 50/477 (10%)

Query: 16  LFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVL 75
           LF   +S G  P++ +   L++ +C    +  A+ V   +   G  PN++T + L++G+ 
Sbjct: 85  LFKKFESNGATPDLCTLNILMNCFCHLTHITFAFSVLANILKRGYHPNAITLNTLIKGLC 144

Query: 76  RTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKS 135
              ++++A       +      +   +N  ++  L++ LC+ G    V R+   + +G S
Sbjct: 145 FRGEIKKA-----LYFHDQVVAQGFQLNQVSYRTLINGLCKTGETKAVARLLRKL-EGHS 198

Query: 136 VNEEFAC-GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAY 194
           V  +      +I SLC++     A  +   M  +G++P++V+YN++V+G C  G    A+
Sbjct: 199 VKPDVVMYNTIIHSLCKNKLLGDACDLYSEMIVKGISPNVVTYNALVYGFCIMGHLKEAF 258

Query: 195 QLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRAL 254
            LL E       P   T+  L++ L  E  ++ A+ VL  M+                  
Sbjct: 259 SLLNEMKLKNINPDVCTFNTLIDALGKEGKMKAAKIVLAVMMKA---------------- 302

Query: 255 CLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPD 314
           C+                   +PDV+T N++I+G+  + +++ A  V   M A     P+
Sbjct: 303 CI-------------------KPDVVTYNSLIDGYFFLNKVKNAKYVFYSM-AQSGVTPN 342

Query: 315 AVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVF 374
             T+TT+I GL     + EA++ L++ M  +   P IVTY +++ GL +   +E A  + 
Sbjct: 343 VRTYTTMIDGLCKEKMVDEAMS-LFEEMKYKNMIPDIVTYTSLIDGLCKNHHLERAIALC 401

Query: 375 NCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRS 434
             M   G+  D  +Y I++D LC+  +L+ AK F+  ++      +   Y  MI GLC++
Sbjct: 402 KKMKEQGIQPDVYSYTILLDALCKGGRLENAKEFFQRLLVKGYHLNVQTYNVMINGLCKA 461

Query: 435 GKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKRE---AYQILREMRKNGLN 488
               EA+    ++   G  P+ + +  +I   C L  K E   A +ILREM   GL 
Sbjct: 462 DLFGEAMDLKSKMEGKGCMPDAITFKTII---CALFEKDENDKAEKILREMIARGLQ 515



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 94/419 (22%), Positives = 186/419 (44%), Gaps = 31/419 (7%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    V EA  LF +MK +  +P++V+YT+LI G C+   ++ A  +  +M+  G+
Sbjct: 350 IDGLCKEKMVDEAMSLFEEMKYKNMIPDIVTYTSLIDGLCKNHHLERAIALCKKMKEQGI 409

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+  +Y++L+  + +   +E A     +L  +        +N   +  +++ LC+    
Sbjct: 410 QPDVYSYTILLDALCKGGRLENAKEFFQRLLVK-----GYHLNVQTYNVMINGLCKADLF 464

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E   +   M     + +      +I +L     N  A +++  M  RGL  +       
Sbjct: 465 GEAMDLKSKMEGKGCMPDAITFKTIICALFEKDENDKAEKILREMIARGLQEA------- 517

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYL------PSEHTYKVLVEGLCGESDLEKARKVLQF 234
                      R  +L E  I    +      P   TY  L++G    ++L+ A+ V   
Sbjct: 518 -----------RKVRLKEAKIVLAVMTKACIKPDVVTYGTLMDGYFLVNELKHAKYVFYS 566

Query: 235 MLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGR 294
           M         +   I +  LC  K   E +++   M      P+++T  ++I+  CK   
Sbjct: 567 MAQMGVTPNVQCYTIMIDGLCKKKTVDEAMSLFEEMKHKNMFPNIVTYTSLIDALCKNHH 626

Query: 295 IEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTY 354
           +E A+ +L +M       PD  ++T ++ GL   GR++ A   ++Q +  +GY   +  Y
Sbjct: 627 LERAIALLKEMKEHGI-QPDVYSYTILLDGLCKSGRLEGAKE-IFQRLLVKGYHLNVQVY 684

Query: 355 NAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413
            A++  L +    +EA ++   M   G + D+ T+ I+I  L E ++ D+A++   +++
Sbjct: 685 TAMINELCKAGLFDEALDLQXKMEDKGCMPDAVTFDIIIWALFEKDENDKAEKILXEMI 743



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 75/325 (23%), Positives = 150/325 (46%), Gaps = 18/325 (5%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   R+  A + F  +  +G+  NV +Y  +I+G C+      A  +  +M   G 
Sbjct: 420 LDALCKGGRLENAKEFFQRLLVKGYHLNVQTYNVMINGLCKADLFGEAMDLKSKMEGKGC 479

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWER-MKEEEDLSVNNAAF-------ANLVD 112
           +P+++T+  ++  +    + ++A  ++ ++  R ++E   + +  A         A +  
Sbjct: 480 MPDAITFKTIICALFEKDENDKAEKILREMIARGLQEARKVRLKEAKIVLAVMTKACIKP 539

Query: 113 SLCREGYVNEVFRIAEDMPQGKSVNEEFA---------CGH-MIDSLCRSGRNHGASRVV 162
            +   G + + + +  ++   K V    A         C   MID LC+      A  + 
Sbjct: 540 DVVTYGTLMDGYFLVNELKHAKYVFYSMAQMGVTPNVQCYTIMIDGLCKKKTVDEAMSLF 599

Query: 163 YVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGE 222
             M+ + + P++V+Y S++  LCK+    RA  LL+E  + G  P  ++Y +L++GLC  
Sbjct: 600 EEMKHKNMFPNIVTYTSLIDALCKNHHLERAIALLKEMKEHGIQPDVYSYTILLDGLCKS 659

Query: 223 SDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITL 282
             LE A+++ Q +L K      ++    +  LC      E L++   M    C PD +T 
Sbjct: 660 GRLEGAKEIFQRLLVKGYHLNVQVYTAMINELCKAGLFDEALDLQXKMEDKGCMPDAVTF 719

Query: 283 NTVINGFCKMGRIEEALKVLNDMVA 307
           + +I    +    ++A K+L +M+A
Sbjct: 720 DIIIWALFEKDENDKAEKILXEMIA 744



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 117/230 (50%), Gaps = 5/230 (2%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           R+ EA  +   M      P+VV+Y TL+ GY    E+  A  VF  M   GV PN   Y+
Sbjct: 521 RLKEAKIVLAVMTKACIKPDVVTYGTLMDGYFLVNELKHAKYVFYSMAQMGVTPNVQCYT 580

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
           +++ G+ + + V+ A      L+E MK + ++  N   + +L+D+LC+  ++     + +
Sbjct: 581 IMIDGLCKKKTVDEA----MSLFEEMKHK-NMFPNIVTYTSLIDALCKNHHLERAIALLK 635

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
           +M +     + ++   ++D LC+SGR  GA  +   +  +G   ++  Y ++++ LCK G
Sbjct: 636 EMKEHGIQPDVYSYTILLDGLCKSGRLEGAKEIFQRLLVKGYHLNVQVYTAMINELCKAG 695

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
               A  L  +    G +P   T+ +++  L  + + +KA K+L  M+++
Sbjct: 696 LFDEALDLQXKMEDKGCMPDAVTFDIIIWALFEKDENDKAEKILXEMIAR 745



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 102/229 (44%), Gaps = 37/229 (16%)

Query: 277 PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALN 336
           PD+ TLN ++N FC +  I  A  VL +++                              
Sbjct: 96  PDLCTLNILMNCFCHLTHITFAFSVLANIL------------------------------ 125

Query: 337 LLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 396
                  +RGY P  +T N +++GL     +++A    + ++  G   +  +Y  +I+GL
Sbjct: 126 -------KRGYHPNAITLNTLIKGLCFRGEIKKALYFHDQVVAQGFQLNQVSYRTLINGL 178

Query: 397 CESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNI 456
           C++ +     R    +   S   D  +Y  +I  LC++  + +A     E++  G++PN+
Sbjct: 179 CKTGETKAVARLLRKLEGHSVKPDVVMYNTIIHSLCKNKLLGDACDLYSEMIVKGISPNV 238

Query: 457 VCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
           V YN ++ G C +   +EA+ +L EM+   +NPD  T+  L    G  G
Sbjct: 239 VTYNALVYGFCIMGHLKEAFSLLNEMKLKNINPDVCTFNTLIDALGKEG 287



 Score = 41.2 bits (95), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 46/86 (53%), Gaps = 6/86 (6%)

Query: 415 PSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS-GVTPNIVCYNVVIDGACKLSMKR 473
           P   H NY+ ++++     + K +  V  L++  +S G TP++   N++++  C L+   
Sbjct: 61  PPTFHFNYILSSLV-----NNKHYPTVISLFKKFESNGATPDLCTLNILMNCFCHLTHIT 115

Query: 474 EAYQILREMRKNGLNPDAVTWRILDK 499
            A+ +L  + K G +P+A+T   L K
Sbjct: 116 FAFSVLANILKRGYHPNAITLNTLIK 141


>gi|115450929|ref|NP_001049065.1| Os03g0165100 [Oryza sativa Japonica Group]
 gi|113547536|dbj|BAF10979.1| Os03g0165100 [Oryza sativa Japonica Group]
          Length = 695

 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 119/414 (28%), Positives = 214/414 (51%), Gaps = 23/414 (5%)

Query: 102 VNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRV 161
           VN      +V + C+    ++V  +  +M +     +      M+D+  R+G    A  +
Sbjct: 93  VNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMAL 152

Query: 162 VYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCG 221
           V  M  +GL P +V+YNS++ GLC+ G   +A+++ +E   FG  P   ++ +L+ G C 
Sbjct: 153 VDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCR 212

Query: 222 ESDLEKARKVLQFMLSKKDVDRTRICNIYLRAL-CLI---KNPTELLNVLVFMLQTQC-- 275
             ++E+A K+ + M       R R     L +  CLI       ++ + + ++ + +C  
Sbjct: 213 VGEIEEALKIYKEM-------RHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFG 265

Query: 276 -QPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEA 334
             PD +    VI GFC+ G + +AL+V ++MV G  C PD VT+ T++ GL    R+ +A
Sbjct: 266 LVPDGVIYTMVIGGFCRAGLMSDALRVRDEMV-GCGCLPDVVTYNTLLNGLCKERRLLDA 324

Query: 335 LNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVID 394
             LL + M +RG  P + T+  ++ G     ++++A ++F+ ML   +  D  TY  +ID
Sbjct: 325 EGLLNE-MRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLID 383

Query: 395 GLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTP 454
           G+C    LD+A   WDD+       ++  Y+ +I   C  G++ +A  FL E+++ G+ P
Sbjct: 384 GMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILP 443

Query: 455 NIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL-------DKLH 501
           NI+ YN +I G C+     +  + L++M  N ++PD +T+  L       DK+H
Sbjct: 444 NIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMH 497



 Score =  184 bits (467), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 113/413 (27%), Positives = 207/413 (50%), Gaps = 10/413 (2%)

Query: 4   LCGLSRVG---EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           L GL R G   +A ++F +M   G  P+V S+T LI G+CR GE++ A K++ EMRH G+
Sbjct: 172 LKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGI 231

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +++S L+    R   ++ A   +     R      L  +   +  ++   CR G +
Sbjct: 232 KPDLVSFSCLIGLFARRGKMDHAMAYL-----REMRCFGLVPDGVIYTMVIGGFCRAGLM 286

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           ++  R+ ++M     + +      +++ LC+  R   A  ++  MR+RG+ P L ++ ++
Sbjct: 287 SDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTL 346

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +HG C  G   +A QL +  +     P   TY  L++G+C + DL+KA  +   M S++ 
Sbjct: 347 IHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREI 406

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                  +I + + C      +    L  M+     P+++T N++I G+C+ G + +  K
Sbjct: 407 FPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQK 466

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
            L  M+  K  +PD +T+ T+I G +   ++ +A  LL  +M +    P +VTYN ++ G
Sbjct: 467 FLQKMMVNK-VSPDLITYNTLIHGYIKEDKMHDAFKLL-NMMEKEKVQPDVVTYNMLING 524

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413
                 V+EA  +F  M   G+  D  TY  +I+G   +    EA +  D+++
Sbjct: 525 FSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEML 577



 Score =  175 bits (443), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 122/473 (25%), Positives = 226/473 (47%), Gaps = 17/473 (3%)

Query: 19  DMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTR 78
           +M+ R   P+VV++  ++    R G+ + A  + D M   G+ P  +TY+ +++G+ R+ 
Sbjct: 120 EMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSG 179

Query: 79  DVERANVLMFKLWERMKEEEDLSV--NNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSV 136
             ++A       WE  KE +D  V  +  +F  L+   CR G + E  +I ++M + + +
Sbjct: 180 MWDKA-------WEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEM-RHRGI 231

Query: 137 NEE---FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRA 193
             +   F+C  +I    R G+   A   +  MR  GL P  V Y  ++ G C+ G    A
Sbjct: 232 KPDLVSFSC--LIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDA 289

Query: 194 YQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRA 253
            ++ +E +  G LP   TY  L+ GLC E  L  A  +L  M  +            +  
Sbjct: 290 LRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHG 349

Query: 254 LCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAP 313
            C+     + L +   ML  + +PD++T NT+I+G C+ G +++A  + +DM + +   P
Sbjct: 350 YCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREI-FP 408

Query: 314 DAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEV 373
           + VT++ +I      G++++A   L + M  +G  P I+TYN++++G  R   V + ++ 
Sbjct: 409 NHVTYSILIDSHCEKGQVEDAFGFLDE-MINKGILPNIMTYNSIIKGYCRSGNVSKGQKF 467

Query: 374 FNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR 433
              M+   V  D  TY  +I G  + +++ +A +  + +       D   Y  +I G   
Sbjct: 468 LQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSV 527

Query: 434 SGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG 486
            G + EA     ++   G+ P+   Y  +I+G       +EA+Q+  EM + G
Sbjct: 528 HGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRG 580



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 81/306 (26%), Positives = 146/306 (47%), Gaps = 40/306 (13%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   R+ +A  L  +M+ RG  P++ ++TTLIHGYC  G++D A ++FD M +  +
Sbjct: 312 LNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRL 371

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TY+ L+ G+ R  D+++AN     LW+ M   E +  N+  ++ L+DS C +G V
Sbjct: 372 RPDIVTYNTLIDGMCRQGDLDKAN----DLWDDMHSRE-IFPNHVTYSILIDSHCEKGQV 426

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            + F   ++M     +N                              +G+ P++++YNSI
Sbjct: 427 EDAFGFLDEM-----IN------------------------------KGILPNIMTYNSI 451

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G C+ G   +  + L++ +     P   TY  L+ G   E  +  A K+L  M  +K 
Sbjct: 452 IKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKV 511

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                  N+ +    +  N  E   +   M     +PD  T  ++ING    G  +EA +
Sbjct: 512 QPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQ 571

Query: 301 VLNDMV 306
           + ++M+
Sbjct: 572 LHDEML 577


>gi|224109690|ref|XP_002315278.1| predicted protein [Populus trichocarpa]
 gi|222864318|gb|EEF01449.1| predicted protein [Populus trichocarpa]
          Length = 728

 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 132/498 (26%), Positives = 235/498 (47%), Gaps = 15/498 (3%)

Query: 4   LCGLSRVGEAHKL------FFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRH 57
           L  L R   +H +      F D    G   N  S+  LIHG C       A +V  +MR 
Sbjct: 166 LNALVRFPSSHSIRLSKAVFTDFIKIGVKINTNSFNILIHGSCMENRFGEAIRVLGKMRD 225

Query: 58  CGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCRE 117
            G  P+++TY+ ++ G+ +   +  A  L+  +     + + L  N   F  LV   CR 
Sbjct: 226 YGCPPDNITYNTILDGLCKKGRLNEARDLLLDM-----KNKGLFPNRTTFNILVVGCCRL 280

Query: 118 GYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
           G++ E   + E M Q   V + +    MI   C+ GR   A R+   M    L+P +V+Y
Sbjct: 281 GWLKEAANVIELMSQNSVVPDAWTYNVMISGFCKQGRIAEAMRLREEMENLKLSPDVVTY 340

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
           N++++G  +HG     ++L+EE    G  P+  TY V+V+    +  +++  K ++ M  
Sbjct: 341 NTLINGCFEHGSSEEGFKLIEEMEGRGMKPNSVTYNVMVKWFVKKGKMDEVDKTVRKMEE 400

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
              +      N  +   C +    E   ++  M +   + D +TLNT++   C+  +++E
Sbjct: 401 SGCLPDIVTYNTLISWHCKVGKMDEAFRLMDEMGRKGLKMDDVTLNTMLRALCRERKLDE 460

Query: 298 ALKVL-NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
           A  +L +    G F   D V++ T+I G     +  +AL L +  M ++   P I+TYN+
Sbjct: 461 AHDLLCSARRRGYFV--DEVSYGTLIIGYFKHEKASQALRL-WDEMKEKEIIPSIITYNS 517

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416
           ++ GL ++ +  +A +  + +L  G+V D  TY  +I G C+  Q+++A +F + +V  +
Sbjct: 518 MIAGLCQMGKTNQAIDKLDELLESGLVPDEITYNTIIHGYCQEGQVEKAFQFHNKMVEKN 577

Query: 417 NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAY 476
              D      ++ GLC+ G + +A+      +  G   + V YN +I   CK     EA+
Sbjct: 578 FKPDVVTCNTLLCGLCKEGMLEKALKLFNTWISKGKDVDAVSYNTIILSLCKEKRFGEAF 637

Query: 477 QILREMRKNGLNPDAVTW 494
            +L EM +  L PD  T+
Sbjct: 638 DLLEEMEEKKLGPDCYTY 655



 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 123/464 (26%), Positives = 219/464 (47%), Gaps = 8/464 (1%)

Query: 36  IHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLR--TRDVERANVLMFKLWER 93
           I  Y   G    A ++F+ M+  G+ P  LT + L+  ++R  +    R +  +F  + +
Sbjct: 131 IGAYVACGRPHQAAQIFNRMKRLGMQPTLLTCNTLLNALVRFPSSHSIRLSKAVFTDFIK 190

Query: 94  MKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSG 153
           +     + +N  +F  L+   C E    E  R+   M       +      ++D LC+ G
Sbjct: 191 I----GVKINTNSFNILIHGSCMENRFGEAIRVLGKMRDYGCPPDNITYNTILDGLCKKG 246

Query: 154 RNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYK 213
           R + A  ++  M+ +GL P+  ++N +V G C+ G    A  ++E   Q   +P   TY 
Sbjct: 247 RLNEARDLLLDMKNKGLFPNRTTFNILVVGCCRLGWLKEAANVIELMSQNSVVPDAWTYN 306

Query: 214 VLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQT 273
           V++ G C +  + +A ++ + M + K        N  +       +  E   ++  M   
Sbjct: 307 VMISGFCKQGRIAEAMRLREEMENLKLSPDVVTYNTLINGCFEHGSSEEGFKLIEEMEGR 366

Query: 274 QCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQE 333
             +P+ +T N ++  F K G+++E  K +  M     C PD VT+ T+I     VG++ E
Sbjct: 367 GMKPNSVTYNVMVKWFVKKGKMDEVDKTVRKMEESG-CLPDIVTYNTLISWHCKVGKMDE 425

Query: 334 ALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVI 393
           A  L+ + M ++G     VT N +LR L R R+++EA ++       G   D  +Y  +I
Sbjct: 426 AFRLMDE-MGRKGLKMDDVTLNTMLRALCRERKLDEAHDLLCSARRRGYFVDEVSYGTLI 484

Query: 394 DGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVT 453
            G  +  +  +A R WD++     I     Y +MI GLC+ GK ++A+  L EL++SG+ 
Sbjct: 485 IGYFKHEKASQALRLWDEMKEKEIIPSIITYNSMIAGLCQMGKTNQAIDKLDELLESGLV 544

Query: 454 PNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           P+ + YN +I G C+     +A+Q   +M +    PD VT   L
Sbjct: 545 PDEITYNTIIHGYCQEGQVEKAFQFHNKMVEKNFKPDVVTCNTL 588



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 118/459 (25%), Positives = 222/459 (48%), Gaps = 15/459 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   R+ EA  L  DMK++G  PN  ++  L+ G CR G +  A  V + M    V
Sbjct: 239 LDGLCKKGRLNEARDLLLDMKNKGLFPNRTTFNILVVGCCRLGWLKEAANVIELMSQNSV 298

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P++ TY+V++ G  +   +  A     +L E M E   LS +   +  L++     G  
Sbjct: 299 VPDAWTYNVMISGFCKQGRIAEA----MRLREEM-ENLKLSPDVVTYNTLINGCFEHGSS 353

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E F++ E+M              M+    + G+     + V  M + G  P +V+YN++
Sbjct: 354 EEGFKLIEEMEGRGMKPNSVTYNVMVKWFVKKGKMDEVDKTVRKMEESGCLPDIVTYNTL 413

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK-- 238
           +   CK G    A++L++E  + G    + T   ++  LC E  L++A  +L     +  
Sbjct: 414 ISWHCKVGKMDEAFRLMDEMGRKGLKMDDVTLNTMLRALCRERKLDEAHDLLCSARRRGY 473

Query: 239 --KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIE 296
              +V    +   Y +     +  ++ L +   M + +  P +IT N++I G C+MG+  
Sbjct: 474 FVDEVSYGTLIIGYFKH----EKASQALRLWDEMKEKEIIPSIITYNSMIAGLCQMGKTN 529

Query: 297 EALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
           +A+  L++++      PD +T+ TII G    G++++A    +  M ++ + P +VT N 
Sbjct: 530 QAIDKLDELLESGL-VPDEITYNTIIHGYCQEGQVEKAFQ-FHNKMVEKNFKPDVVTCNT 587

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416
           +L GL +   +E+A ++FN  +  G   D+ +Y  +I  LC+  +  EA    +++    
Sbjct: 588 LLCGLCKEGMLEKALKLFNTWISKGKDVDAVSYNTIILSLCKEKRFGEAFDLLEEMEEKK 647

Query: 417 NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN 455
              D Y Y A++ GL  +G++ +A  F+ ++ + G + N
Sbjct: 648 LGPDCYTYNAILGGLTDAGRMKDAEEFISKIAEKGKSEN 686



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 114/483 (23%), Positives = 230/483 (47%), Gaps = 9/483 (1%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C  +R GEA ++   M+  G  P+ ++Y T++ G C+ G ++ A  +  +M++ G+ PN 
Sbjct: 208 CMENRFGEAIRVLGKMRDYGCPPDNITYNTILDGLCKKGRLNEARDLLLDMKNKGLFPNR 267

Query: 65  LTYSVLVRGVLRTRDV-ERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            T+++LV G  R   + E ANV+       +  +  +  +   +  ++   C++G + E 
Sbjct: 268 TTFNILVVGCCRLGWLKEAANVI------ELMSQNSVVPDAWTYNVMISGFCKQGRIAEA 321

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            R+ E+M   K   +      +I+     G +    +++  M  RG+ P+ V+YN +V  
Sbjct: 322 MRLREEMENLKLSPDVVTYNTLINGCFEHGSSEEGFKLIEEMEGRGMKPNSVTYNVMVKW 381

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
             K G      + + +  + G LP   TY  L+   C    +++A +++  M  K     
Sbjct: 382 FVKKGKMDEVDKTVRKMEESGCLPDIVTYNTLISWHCKVGKMDEAFRLMDEMGRKGLKMD 441

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               N  LRALC  +   E  ++L    +     D ++  T+I G+ K  +  +AL++ +
Sbjct: 442 DVTLNTMLRALCRERKLDEAHDLLCSARRRGYFVDEVSYGTLIIGYFKHEKASQALRLWD 501

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           +M   K   P  +T+ ++I GL  +G+  +A++ L +++ + G  P  +TYN ++ G  +
Sbjct: 502 EM-KEKEIIPSIITYNSMIAGLCQMGKTNQAIDKLDELL-ESGLVPDEITYNTIIHGYCQ 559

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
             +VE+A +  N M+      D  T   ++ GLC+   L++A + ++  +      D   
Sbjct: 560 EGQVEKAFQFHNKMVEKNFKPDVVTCNTLLCGLCKEGMLEKALKLFNTWISKGKDVDAVS 619

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y  +I  LC+  +  EA   L E+ +  + P+   YN ++ G       ++A + + ++ 
Sbjct: 620 YNTIILSLCKEKRFGEAFDLLEEMEEKKLGPDCYTYNAILGGLTDAGRMKDAEEFISKIA 679

Query: 484 KNG 486
           + G
Sbjct: 680 EKG 682



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/258 (31%), Positives = 124/258 (48%), Gaps = 5/258 (1%)

Query: 247 CNIYLRALCLIKNPTEL-LNVLVF--MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
           CN  L AL    +   + L+  VF   ++   + +  + N +I+G C   R  EA++VL 
Sbjct: 162 CNTLLNALVRFPSSHSIRLSKAVFTDFIKIGVKINTNSFNILIHGSCMENRFGEAIRVLG 221

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            M     C PD +T+ TI+ GL   GR+ EA +LL   M  +G  P   T+N ++ G  R
Sbjct: 222 KM-RDYGCPPDNITYNTILDGLCKKGRLNEARDLLLD-MKNKGLFPNRTTFNILVVGCCR 279

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
           L  ++EA  V   M    VV D+ TY ++I G C+  ++ EA R  +++       D   
Sbjct: 280 LGWLKEAANVIELMSQNSVVPDAWTYNVMISGFCKQGRIAEAMRLREEMENLKLSPDVVT 339

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y  +I G    G   E    + E+   G+ PN V YNV++    K     E  + +R+M 
Sbjct: 340 YNTLINGCFEHGSSEEGFKLIEEMEGRGMKPNSVTYNVMVKWFVKKGKMDEVDKTVRKME 399

Query: 484 KNGLNPDAVTWRILDKLH 501
           ++G  PD VT+  L   H
Sbjct: 400 ESGCLPDIVTYNTLISWH 417



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 122/249 (48%), Gaps = 5/249 (2%)

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVING---FCKMGRIEEALKVLNDMVAGKFCAPDAV 316
           P +   +   M +   QP ++T NT++N    F     I  +  V  D +       +  
Sbjct: 140 PHQAAQIFNRMKRLGMQPTLLTCNTLLNALVRFPSSHSIRLSKAVFTDFIKIGV-KINTN 198

Query: 317 TFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNC 376
           +F  +I G     R  EA+ +L + M   G  P  +TYN +L GL +  R+ EA+++   
Sbjct: 199 SFNILIHGSCMENRFGEAIRVLGK-MRDYGCPPDNITYNTILDGLCKKGRLNEARDLLLD 257

Query: 377 MLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGK 436
           M   G+  + TT+ I++ G C    L EA    + +   S + D + Y  MI G C+ G+
Sbjct: 258 MKNKGLFPNRTTFNILVVGCCRLGWLKEAANVIELMSQNSVVPDAWTYNVMISGFCKQGR 317

Query: 437 IHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRI 496
           I EA+    E+ +  ++P++V YN +I+G  +     E ++++ EM   G+ P++VT+ +
Sbjct: 318 IAEAMRLREEMENLKLSPDVVTYNTLINGCFEHGSSEEGFKLIEEMEGRGMKPNSVTYNV 377

Query: 497 LDKLHGNRG 505
           + K    +G
Sbjct: 378 MVKWFVKKG 386


>gi|20219038|gb|AAM15782.1|AC104428_3 Putative indole-3-acetate beta-glucosyltransferase [Oryza sativa
           Japonica Group]
 gi|108706351|gb|ABF94146.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
 gi|125585039|gb|EAZ25703.1| hypothetical protein OsJ_09536 [Oryza sativa Japonica Group]
          Length = 648

 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 119/414 (28%), Positives = 214/414 (51%), Gaps = 23/414 (5%)

Query: 102 VNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRV 161
           VN      +V + C+    ++V  +  +M +     +      M+D+  R+G    A  +
Sbjct: 154 VNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMAL 213

Query: 162 VYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCG 221
           V  M  +GL P +V+YNS++ GLC+ G   +A+++ +E   FG  P   ++ +L+ G C 
Sbjct: 214 VDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCR 273

Query: 222 ESDLEKARKVLQFMLSKKDVDRTRICNIYLRAL-CLI---KNPTELLNVLVFMLQTQC-- 275
             ++E+A K+ + M       R R     L +  CLI       ++ + + ++ + +C  
Sbjct: 274 VGEIEEALKIYKEM-------RHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFG 326

Query: 276 -QPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEA 334
             PD +    VI GFC+ G + +AL+V ++MV G  C PD VT+ T++ GL    R+ +A
Sbjct: 327 LVPDGVIYTMVIGGFCRAGLMSDALRVRDEMV-GCGCLPDVVTYNTLLNGLCKERRLLDA 385

Query: 335 LNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVID 394
             LL + M +RG  P + T+  ++ G     ++++A ++F+ ML   +  D  TY  +ID
Sbjct: 386 EGLLNE-MRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLID 444

Query: 395 GLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTP 454
           G+C    LD+A   WDD+       ++  Y+ +I   C  G++ +A  FL E+++ G+ P
Sbjct: 445 GMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILP 504

Query: 455 NIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL-------DKLH 501
           NI+ YN +I G C+     +  + L++M  N ++PD +T+  L       DK+H
Sbjct: 505 NIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMH 558



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 113/413 (27%), Positives = 207/413 (50%), Gaps = 10/413 (2%)

Query: 4   LCGLSRVG---EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           L GL R G   +A ++F +M   G  P+V S+T LI G+CR GE++ A K++ EMRH G+
Sbjct: 233 LKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGI 292

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +++S L+    R   ++ A   +     R      L  +   +  ++   CR G +
Sbjct: 293 KPDLVSFSCLIGLFARRGKMDHAMAYL-----REMRCFGLVPDGVIYTMVIGGFCRAGLM 347

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           ++  R+ ++M     + +      +++ LC+  R   A  ++  MR+RG+ P L ++ ++
Sbjct: 348 SDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTL 407

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +HG C  G   +A QL +  +     P   TY  L++G+C + DL+KA  +   M S++ 
Sbjct: 408 IHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREI 467

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                  +I + + C      +    L  M+     P+++T N++I G+C+ G + +  K
Sbjct: 468 FPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQK 527

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
            L  M+  K  +PD +T+ T+I G +   ++ +A  LL  +M +    P +VTYN ++ G
Sbjct: 528 FLQKMMVNK-VSPDLITYNTLIHGYIKEDKMHDAFKLL-NMMEKEKVQPDVVTYNMLING 585

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413
                 V+EA  +F  M   G+  D  TY  +I+G   +    EA +  D+++
Sbjct: 586 FSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEML 638



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 124/477 (25%), Positives = 228/477 (47%), Gaps = 17/477 (3%)

Query: 19  DMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTR 78
           +M+ R   P+VV++  ++    R G+ + A  + D M   G+ P  +TY+ +++G+ R+ 
Sbjct: 181 EMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSG 240

Query: 79  DVERANVLMFKLWERMKEEEDLSV--NNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSV 136
             ++A       WE  KE +D  V  +  +F  L+   CR G + E  +I ++M + + +
Sbjct: 241 MWDKA-------WEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEM-RHRGI 292

Query: 137 NEE---FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRA 193
             +   F+C  +I    R G+   A   +  MR  GL P  V Y  ++ G C+ G    A
Sbjct: 293 KPDLVSFSC--LIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDA 350

Query: 194 YQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRA 253
            ++ +E +  G LP   TY  L+ GLC E  L  A  +L  M  +            +  
Sbjct: 351 LRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHG 410

Query: 254 LCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAP 313
            C+     + L +   ML  + +PD++T NT+I+G C+ G +++A  + +DM + +   P
Sbjct: 411 YCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREI-FP 469

Query: 314 DAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEV 373
           + VT++ +I      G++++A   L + M  +G  P I+TYN++++G  R   V + ++ 
Sbjct: 470 NHVTYSILIDSHCEKGQVEDAFGFLDE-MINKGILPNIMTYNSIIKGYCRSGNVSKGQKF 528

Query: 374 FNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR 433
              M+   V  D  TY  +I G  + +++ +A +  + +       D   Y  +I G   
Sbjct: 529 LQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSV 588

Query: 434 SGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD 490
            G + EA     ++   G+ P+   Y  +I+G       +EA+Q+  EM + G  PD
Sbjct: 589 HGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRGFAPD 645



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 85/314 (27%), Positives = 150/314 (47%), Gaps = 41/314 (13%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   R+ +A  L  +M+ RG  P++ ++TTLIHGYC  G++D A ++FD M +  +
Sbjct: 373 LNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRL 432

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TY+ L+ G+ R  D+++AN     LW+ M   E +  N+  ++ L+DS C +G V
Sbjct: 433 RPDIVTYNTLIDGMCRQGDLDKAN----DLWDDMHSRE-IFPNHVTYSILIDSHCEKGQV 487

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            + F   ++M     +N                              +G+ P++++YNSI
Sbjct: 488 EDAFGFLDEM-----IN------------------------------KGILPNIMTYNSI 512

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G C+ G   +  + L++ +     P   TY  L+ G   E  +  A K+L  M  +K 
Sbjct: 513 IKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKV 572

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                  N+ +    +  N  E   +   M     +PD  T  ++ING    G  +EA +
Sbjct: 573 QPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQ 632

Query: 301 VLNDMVAGKFCAPD 314
           + ++M+   F APD
Sbjct: 633 LHDEMLQRGF-APD 645


>gi|356524676|ref|XP_003530954.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g12700, mitochondrial-like
           [Glycine max]
          Length = 555

 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 133/503 (26%), Positives = 229/503 (45%), Gaps = 53/503 (10%)

Query: 2   DQLCG-LSRVGE---AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRH 57
           D+L G + R+G    A  LF  + S+G  P++ + T LI+ YC    +  A+ +   +  
Sbjct: 59  DKLLGAIVRMGHYPTAISLFSQLHSKGITPSIATLTILINCYCHQAHLSFAFSLLGTILK 118

Query: 58  CGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCRE 117
            G  PN +T++ L+ G      V +A      L  +    ++ S     + +L++ LC+ 
Sbjct: 119 MGFQPNMVTFNTLINGFCINGMVSKAMAFRLDLMAKGYPLDEFS-----YGSLINGLCKN 173

Query: 118 GYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
           G   +  ++ + M +            +ID LC+      A R+  ++  RG+   +V+Y
Sbjct: 174 GQTRDALQLLQKMEEDLVRPNLITYSTVIDGLCKDRLIADALRLFSLVTSRGILVDVVAY 233

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
           NS++HG C  G    A +LL   ++    P ++T+ +LV+ LC E  + +A+ V   M+ 
Sbjct: 234 NSLIHGCCSVGQWREATRLLTMMVRGNINPDDYTFNILVDALCKEGRIVEAQGVFAVMMK 293

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
           + +       N  +   CL  N +E   +   M++   +PDV+  N +ING+CK+  ++E
Sbjct: 294 RGEKPDIVTYNALMEGFCLSNNVSEARELFNRMVKRGLEPDVLNYNVLINGYCKIDMVDE 353

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           A+ VL   +  K   P+  T+ ++I GL  +GR+   +  L   M  RG SP IVTYN  
Sbjct: 354 AM-VLFKEIRCKNLVPNLATYNSLIDGLCKLGRMS-CVQELVDEMCDRGQSPDIVTYN-- 409

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV---W 414
                                            I +D  C+S   ++A   +  IV   W
Sbjct: 410 ---------------------------------IFLDAFCKSKPYEKAISLFRQIVQGIW 436

Query: 415 PSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKRE 474
           P    D Y+Y  +++  C+  K+  A   L  L+  G  PN+  Y ++I+  CK     E
Sbjct: 437 P----DFYMYDVIVENFCKGEKLKIAEEALQHLLIHGCCPNVRTYTIMINALCKDCSFDE 492

Query: 475 AYQILREMRKNGLNPDAVTWRIL 497
           A  +L +M  N   PDAVT+  +
Sbjct: 493 AMTLLSKMDDNDCPPDAVTFETI 515



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 101/420 (24%), Positives = 193/420 (45%), Gaps = 8/420 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C    V +A     D+ ++G+  +  SY +LI+G C+ G+   A ++  +M    V
Sbjct: 132 INGFCINGMVSKAMAFRLDLMAKGYPLDEFSYGSLINGLCKNGQTRDALQLLQKMEEDLV 191

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +TYS ++ G+ + R +  A  L   +  R      + V+  A+ +L+   C  G  
Sbjct: 192 RPNLITYSTVIDGLCKDRLIADALRLFSLVTSR-----GILVDVVAYNSLIHGCCSVGQW 246

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E  R+   M +G    +++    ++D+LC+ GR   A  V  VM KRG  P +V+YN++
Sbjct: 247 REATRLLTMMVRGNINPDDYTFNILVDALCKEGRIVEAQGVFAVMMKRGEKPDIVTYNAL 306

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G C       A +L    ++ G  P    Y VL+ G C    +++A  + + +  K  
Sbjct: 307 MEGFCLSNNVSEARELFNRMVKRGLEPDVLNYNVLINGYCKIDMVDEAMVLFKEIRCKNL 366

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           V      N  +  LC +   + +  ++  M      PD++T N  ++ FCK    E+A+ 
Sbjct: 367 VPNLATYNSLIDGLCKLGRMSCVQELVDEMCDRGQSPDIVTYNIFLDAFCKSKPYEKAIS 426

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +   +V G +  PD   +  I+       +++ A   L  ++   G  P + TY  ++  
Sbjct: 427 LFRQIVQGIW--PDFYMYDVIVENFCKGEKLKIAEEALQHLLIH-GCCPNVRTYTIMINA 483

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L +    +EA  + + M       D+ T+  +I  L E N+ D+A++   +++    ++D
Sbjct: 484 LCKDCSFDEAMTLLSKMDDNDCPPDAVTFETIIGALQERNETDKAEKLRLEMIERGLVND 543



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 102/212 (48%), Gaps = 4/212 (1%)

Query: 291 KMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG 350
           K   +++ L   N M+  K   P    F  ++  ++ +G    A++L  Q +  +G +P 
Sbjct: 32  KFHTVDDTLLSFNRMLR-KHPPPPIFVFDKLLGAIVRMGHYPTAISLFSQ-LHSKGITPS 89

Query: 351 IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD 410
           I T   ++        +  A  +   +L +G   +  T+  +I+G C +  + +A  F  
Sbjct: 90  IATLTILINCYCHQAHLSFAFSLLGTILKMGFQPNMVTFNTLINGFCINGMVSKAMAFRL 149

Query: 411 DIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLS 470
           D++      D + Y ++I GLC++G+  +A+  L ++ +  V PN++ Y+ VIDG CK  
Sbjct: 150 DLMAKGYPLDEFSYGSLINGLCKNGQTRDALQLLQKMEEDLVRPNLITYSTVIDGLCKDR 209

Query: 471 MKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
           +  +A ++   +   G+  D V +  L  +HG
Sbjct: 210 LIADALRLFSLVTSRGILVDVVAYNSL--IHG 239


>gi|359487666|ref|XP_002277942.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Vitis vinifera]
          Length = 609

 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 139/470 (29%), Positives = 224/470 (47%), Gaps = 42/470 (8%)

Query: 28  NVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLM 87
           N +    L+  Y + GEMD+A + FD                            RA    
Sbjct: 158 NSIIVDMLVWAYVKNGEMDLALEGFD----------------------------RAGDYG 189

Query: 88  FKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMID 147
           F+L         LS N      ++ SL +EG +  V  + ++M + +          +I+
Sbjct: 190 FRL-------SALSCNP-----MLVSLVKEGRIGVVESVYKEMIRRRIGVNVVTFDVVIN 237

Query: 148 SLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLP 207
            LC+ G+   A  VV  M+  G +PS+++YN+I+ G CK G   +A  LL+E +     P
Sbjct: 238 GLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHP 297

Query: 208 SEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVL 267
           +E T+ +L++G C + ++  A+KV + M  +         N  +  LC      E L + 
Sbjct: 298 NEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQ 357

Query: 268 VFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLN 327
             M     +P+V+T N +INGFCK   ++EA ++L+D +  +  AP+ +TF T+I     
Sbjct: 358 DKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDD-IGKRGLAPNVITFNTLIDAYGK 416

Query: 328 VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADST 387
            GR+ +A  LL  +M   G  P + TYN ++ G  R   V+EA+++   M G G+ AD  
Sbjct: 417 AGRMDDAF-LLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLV 475

Query: 388 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYEL 447
           TY I++D LC+  +  +A R  D++        +  Y A+I G  R G    A++    +
Sbjct: 476 TYNILVDALCKKGETRKAVRLLDEMFEVGLNPSHLTYNALIDGYFREGNSTAALNVRTLM 535

Query: 448 VDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
              G   NIV YNV+I G C      EA ++L EM + GL P+  T+ IL
Sbjct: 536 EKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDIL 585



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 104/366 (28%), Positives = 189/366 (51%), Gaps = 2/366 (0%)

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
            +C  M+ SL + GR      V   M +R +  ++V+++ +++GLCK G   +A  ++E+
Sbjct: 195 LSCNPMLVSLVKEGRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVED 254

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
              +G+ PS  TY  +++G C    + KA  +L+ M++K+        NI +   C  +N
Sbjct: 255 MKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDEN 314

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
            T    V   M +   QP+V+T N++ING C  G+++EAL  L D ++G    P+ VT+ 
Sbjct: 315 VTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALG-LQDKMSGMGLKPNVVTYN 373

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
            +I G      ++EA  +L  +  +RG +P ++T+N ++    +  R+++A  + + ML 
Sbjct: 374 ALINGFCKKKMLKEAREMLDDI-GKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLD 432

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
            GV  + +TY  +I G C    + EA++   ++       D   Y  ++  LC+ G+  +
Sbjct: 433 TGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRK 492

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
           AV  L E+ + G+ P+ + YN +IDG  +      A  +   M K G   + VT+ +L K
Sbjct: 493 AVRLLDEMFEVGLNPSHLTYNALIDGYFREGNSTAALNVRTLMEKKGRRANIVTYNVLIK 552

Query: 500 LHGNRG 505
              N+G
Sbjct: 553 GFCNKG 558



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 104/398 (26%), Positives = 191/398 (47%), Gaps = 42/398 (10%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC + +  +A  +  DMK+ G  P+V++Y T+I GYC+ G+M  A  +  EM    +
Sbjct: 236 INGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRI 295

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +T+++L+ G  R  +V  A     K++E M + + L  N   + +L++ LC  G +
Sbjct: 296 HPNEITFNILIDGFCRDENVTAAK----KVFEEM-QRQGLQPNVVTYNSLINGLCSNGKL 350

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E   + + M              +I+  C+      A  ++  + KRGL P+++++N++
Sbjct: 351 DEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTL 410

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +    K G    A+ L    +  G  P+  TY  L+ G C E ++++ARK     L+K+ 
Sbjct: 411 IDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARK-----LAKE- 464

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                        M     + D++T N +++  CK G   +A++
Sbjct: 465 -----------------------------MEGNGLKADLVTYNILVDALCKKGETRKAVR 495

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +L++M       P  +T+  +I G    G    ALN +  +M ++G    IVTYN +++G
Sbjct: 496 LLDEMFEVGL-NPSHLTYNALIDGYFREGNSTAALN-VRTLMEKKGRRANIVTYNVLIKG 553

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE 398
                ++EEA  + N ML  G++ + TTY I+ D + E
Sbjct: 554 FCNKGKLEEANRLLNEMLEKGLIPNRTTYDILRDEMME 591



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 114/439 (25%), Positives = 202/439 (46%), Gaps = 42/439 (9%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           R+G    ++ +M  R    NVV++  +I+G C+ G+   A  V ++M+  G  P+ +TY+
Sbjct: 209 RIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYN 268

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
            ++ G  +   + +A+ L+ ++  +      +  N   F  L+D  CR+          E
Sbjct: 269 TIIDGYCKAGKMFKADALLKEMVAKR-----IHPNEITFNILIDGFCRD----------E 313

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
           ++   K V EE                         M+++GL P++V+YNS+++GLC +G
Sbjct: 314 NVTAAKKVFEE-------------------------MQRQGLQPNVVTYNSLINGLCSNG 348

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
               A  L ++    G  P+  TY  L+ G C +  L++AR++L  +  +         N
Sbjct: 349 KLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFN 408

Query: 249 IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 308
             + A        +   +   ML T   P+V T N +I GFC+ G ++EA K+  +M  G
Sbjct: 409 TLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEM-EG 467

Query: 309 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE 368
                D VT+  ++  L   G  ++A+ LL + M + G +P  +TYNA++ G FR     
Sbjct: 468 NGLKADLVTYNILVDALCKKGETRKAVRLLDE-MFEVGLNPSHLTYNALIDGYFREGNST 526

Query: 369 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI 428
            A  V   M   G  A+  TY ++I G C   +L+EA R  ++++    I +   Y  + 
Sbjct: 527 AALNVRTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDILR 586

Query: 429 KGLCRSGKIHEAVHFLYEL 447
             +   G I +    LY +
Sbjct: 587 DEMMEKGFIPDIDGHLYNV 605



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/345 (26%), Positives = 167/345 (48%), Gaps = 14/345 (4%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C   ++ +A  L  +M ++   PN +++  LI G+CR   +  A KVF+EM+  G+
Sbjct: 271 IDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGL 330

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +TY+ L+ G+     ++ A      L ++M     L  N   +  L++  C++  +
Sbjct: 331 QPNVVTYNSLINGLCSNGKLDEA----LGLQDKM-SGMGLKPNVVTYNALINGFCKKKML 385

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E   + +D+ +            +ID+  ++GR   A  +  +M   G+ P++ +YN +
Sbjct: 386 KEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCL 445

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM----L 236
           + G C+ G    A +L +E    G      TY +LV+ LC + +  KA ++L  M    L
Sbjct: 446 IVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMFEVGL 505

Query: 237 SKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIE 296
           +   +    + + Y R      N T  LNV   M +   + +++T N +I GFC  G++E
Sbjct: 506 NPSHLTYNALIDGYFRE----GNSTAALNVRTLMEKKGRRANIVTYNVLIKGFCNKGKLE 561

Query: 297 EALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQV 341
           EA ++LN+M+  K   P+  T+  +   ++  G I +    LY V
Sbjct: 562 EANRLLNEMLE-KGLIPNRTTYDILRDEMMEKGFIPDIDGHLYNV 605


>gi|356498873|ref|XP_003518272.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 566

 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 128/499 (25%), Positives = 240/499 (48%), Gaps = 13/499 (2%)

Query: 1   MDQLCGLSRVGE---AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRH 57
           +  LC L R GE     +    M ++G +P+VV+ T LI  +C+ G    A ++   +  
Sbjct: 73  IHHLCRLIRNGELEEGSRFLEYMTNKGKIPDVVACTALIREFCKIGRTKNATRIMGILEE 132

Query: 58  CGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCRE 117
            G + ++ +Y+VL+    ++ ++E A         R+ +   ++ N A +  ++ SLC  
Sbjct: 133 SGAVIDANSYNVLINAYCKSGEIEEA--------LRVLDHTSVAPNAATYDAVLCSLCDR 184

Query: 118 GYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
           G + +  ++ +   Q K   +   C  +ID+ C+      A ++   MR +G  P +V+Y
Sbjct: 185 GKLKQAMQVLDRQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRGKGCKPDVVTY 244

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
           N ++ G CK G    A   L++   +G      ++ +++  LC       A K+L  ML 
Sbjct: 245 NVLIKGFCKEGRLDEAIIFLKKLPSYGCQSDVISHNMILRSLCSGGRWMDAMKLLATMLR 304

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
           K         NI +  LC      + LNVL  M +    P+  + N +I GFC    I+ 
Sbjct: 305 KGCFPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNRKGIDR 364

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           A++ L  MV+ + C PD VT+  ++  L   G++ +A+ +L Q +  +G SP +++YN V
Sbjct: 365 AIEHLEIMVS-RGCYPDIVTYNILLTALCKDGKVDDAVVILSQ-LSSKGCSPSLISYNTV 422

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 417
           + GL ++ + E A E+   M   G+  D  T   V+ GL    ++ EA +F+  +     
Sbjct: 423 IDGLLKVGKAELAVELLEEMCYKGLKPDLITCTSVVGGLSREGKVHEAIKFFHYLKGFGI 482

Query: 418 IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQ 477
             + ++Y +++ GLC++ +   A+ FL ++V +G  P    Y  +I G     +  EA +
Sbjct: 483 KPNAFIYNSIMMGLCKAQQTSLAIDFLVDMVANGCKPTEASYTTLIKGITYEGLAEEASK 542

Query: 478 ILREMRKNGLNPDAVTWRI 496
           +  E+   GL   ++  ++
Sbjct: 543 LSNELYSRGLVKKSLIVKV 561



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 129/464 (27%), Positives = 223/464 (48%), Gaps = 14/464 (3%)

Query: 3   QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           + C + R   A ++   ++  G V +  SY  LI+ YC++GE++ A +V D   H  V P
Sbjct: 113 EFCKIGRTKNATRIMGILEESGAVIDANSYNVLINAYCKSGEIEEALRVLD---HTSVAP 169

Query: 63  NSLTY-SVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVN 121
           N+ TY +VL     R +  +   VL  +L  +   +            L+D+ C+E  V 
Sbjct: 170 NAATYDAVLCSLCDRGKLKQAMQVLDRQLQSKCYPDV------VTCTVLIDATCKESGVG 223

Query: 122 EVFRIAEDMPQGKSVNEEFACGH-MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +  ++  +M +GK    +    + +I   C+ GR   A   +  +   G    ++S+N I
Sbjct: 224 QAMKLFNEM-RGKGCKPDVVTYNVLIKGFCKEGRLDEAIIFLKKLPSYGCQSDVISHNMI 282

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +  LC  G  M A +LL   ++ G  PS  T+ +L+  LC +  L KA  VL+ M     
Sbjct: 283 LRSLCSGGRWMDAMKLLATMLRKGCFPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGH 342

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
              +R  N  ++  C  K     +  L  M+   C PD++T N ++   CK G++++A+ 
Sbjct: 343 TPNSRSFNPLIQGFCNRKGIDRAIEHLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVV 402

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +L+ + + K C+P  +++ T+I GLL VG+ + A+ LL + M  +G  P ++T  +V+ G
Sbjct: 403 ILSQL-SSKGCSPSLISYNTVIDGLLKVGKAELAVELLEE-MCYKGLKPDLITCTSVVGG 460

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L R  +V EA + F+ + G G+  ++  Y  ++ GLC++ Q   A  F  D+V       
Sbjct: 461 LSREGKVHEAIKFFHYLKGFGIKPNAFIYNSIMMGLCKAQQTSLAIDFLVDMVANGCKPT 520

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
              Y  +IKG+   G   EA     EL   G+    +   V  D
Sbjct: 521 EASYTTLIKGITYEGLAEEASKLSNELYSRGLVKKSLIVKVSQD 564



 Score =  174 bits (441), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 127/467 (27%), Positives = 218/467 (46%), Gaps = 13/467 (2%)

Query: 36  IHGYCR---TGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWE 92
           IH  CR    GE++   +  + M + G +P+ +  + L+R   +    + A  +M  L  
Sbjct: 73  IHHLCRLIRNGELEEGSRFLEYMTNKGKIPDVVACTALIREFCKIGRTKNATRIMGIL-- 130

Query: 93  RMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRS 152
              EE    ++  ++  L+++ C+ G + E  R+ +      +     A   ++ SLC  
Sbjct: 131 ---EESGAVIDANSYNVLINAYCKSGEIEEALRVLDHTSVAPNAATYDA---VLCSLCDR 184

Query: 153 GRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTY 212
           G+   A +V+    +    P +V+   ++   CK  G  +A +L  E    G  P   TY
Sbjct: 185 GKLKQAMQVLDRQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRGKGCKPDVVTY 244

Query: 213 KVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQ 272
            VL++G C E  L++A   L+ + S          N+ LR+LC      + + +L  ML+
Sbjct: 245 NVLIKGFCKEGRLDEAIIFLKKLPSYGCQSDVISHNMILRSLCSGGRWMDAMKLLATMLR 304

Query: 273 TQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQ 332
             C P V+T N +IN  C+ G + +AL VL +M+      P++ +F  +I G  N   I 
Sbjct: 305 KGCFPSVVTFNILINFLCQKGLLGKALNVL-EMMPKHGHTPNSRSFNPLIQGFCNRKGID 363

Query: 333 EALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIV 392
            A+  L ++M  RG  P IVTYN +L  L +  +V++A  + + +   G      +Y  V
Sbjct: 364 RAIEHL-EIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTV 422

Query: 393 IDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGV 452
           IDGL +  + + A    +++ +     D     +++ GL R GK+HEA+ F + L   G+
Sbjct: 423 IDGLLKVGKAELAVELLEEMCYKGLKPDLITCTSVVGGLSREGKVHEAIKFFHYLKGFGI 482

Query: 453 TPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
            PN   YN ++ G CK      A   L +M  NG  P   ++  L K
Sbjct: 483 KPNAFIYNSIMMGLCKAQQTSLAIDFLVDMVANGCKPTEASYTTLIK 529



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 106/394 (26%), Positives = 178/394 (45%), Gaps = 40/394 (10%)

Query: 135 SVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAY 194
           S+N E +  H +  L R+G     SR +  M  +G  P +V+  +++   CK G    A 
Sbjct: 65  SLNFEESEIHHLCRLIRNGELEEGSRFLEYMTNKGKIPDVVACTALIREFCKIGRTKNAT 124

Query: 195 QLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRAL 254
           +++    + G +   ++Y VL+   C   ++E+A +VL       +       +  L +L
Sbjct: 125 RIMGILEESGAVIDANSYNVLINAYCKSGEIEEALRVLDHTSVAPNAATY---DAVLCSL 181

Query: 255 CLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPD 314
           C      + + VL   LQ++C PDV+T   +I+  CK   + +A+K+ N+M  GK C PD
Sbjct: 182 CDRGKLKQAMQVLDRQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEM-RGKGCKPD 240

Query: 315 AVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVF 374
            VT+  +I G    GR+ EA+  L + +P  G    ++++N +LR L    R  +A ++ 
Sbjct: 241 VVTYNVLIKGFCKEGRLDEAIIFLKK-LPSYGCQSDVISHNMILRSLCSGGRWMDAMKLL 299

Query: 375 NCMLGIGVVADSTTYAIVID-----------------------------------GLCES 399
             ML  G      T+ I+I+                                   G C  
Sbjct: 300 ATMLRKGCFPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNR 359

Query: 400 NQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCY 459
             +D A    + +V      D   Y  ++  LC+ GK+ +AV  L +L   G +P+++ Y
Sbjct: 360 KGIDRAIEHLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISY 419

Query: 460 NVVIDGACKLSMKREAYQILREMRKNGLNPDAVT 493
           N VIDG  K+     A ++L EM   GL PD +T
Sbjct: 420 NTVIDGLLKVGKAELAVELLEEMCYKGLKPDLIT 453



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/284 (27%), Positives = 147/284 (51%), Gaps = 11/284 (3%)

Query: 224 DLEKARKVLQFMLSKKDVDRTRICNIYLRALCLI---KNPTELLNVLVFMLQTQCQPDVI 280
           +LE+  + L++M +K  +     C   +R  C I   KN T ++ +L    ++    D  
Sbjct: 84  ELEEGSRFLEYMTNKGKIPDVVACTALIREFCKIGRTKNATRIMGILE---ESGAVIDAN 140

Query: 281 TLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQ 340
           + N +IN +CK G IEEAL+VL+        AP+A T+  ++  L + G++++A+ +L +
Sbjct: 141 SYNVLINAYCKSGEIEEALRVLDHTSV----APNAATYDAVLCSLCDRGKLKQAMQVLDR 196

Query: 341 VMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN 400
            +  + Y P +VT   ++    +   V +A ++FN M G G   D  TY ++I G C+  
Sbjct: 197 QLQSKCY-PDVVTCTVLIDATCKESGVGQAMKLFNEMRGKGCKPDVVTYNVLIKGFCKEG 255

Query: 401 QLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYN 460
           +LDEA  F   +       D   +  +++ LC  G+  +A+  L  ++  G  P++V +N
Sbjct: 256 RLDEAIIFLKKLPSYGCQSDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCFPSVVTFN 315

Query: 461 VVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNR 504
           ++I+  C+  +  +A  +L  M K+G  P++ ++  L +   NR
Sbjct: 316 ILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNR 359


>gi|255586501|ref|XP_002533891.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526155|gb|EEF28491.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 701

 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 127/499 (25%), Positives = 245/499 (49%), Gaps = 15/499 (3%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C   ++ +A  L   M S+   P+V SY TLI+G  + G++  A KVFDEM   GV+ + 
Sbjct: 162 CKKQQIEKAISLLDWMWSQNLKPDVFSYGTLINGMVKVGDLLGALKVFDEMSVRGVVADV 221

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
             Y++L+ G  +  D ++      ++WER+ ++  +  N   +  +++ LC+ G  +E  
Sbjct: 222 TCYNMLIDGFFKHGDYDKGK----EIWERLVKDCSVYPNVVTYNIMINGLCKCGRFDESL 277

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
            I E M + +   + F    +I  LC +G   GA RV   + +  L    V++N++++G 
Sbjct: 278 EIWERMTKNEREKDMFTYSSLIHGLCEAGNIDGAVRVYKEIVESSLVVDAVTHNAMLNGF 337

Query: 185 CKHGGCMRAYQLL----EEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           C+ G    +++L     +E  Q     +  +Y +L++GL     +E+A  + + +  K  
Sbjct: 338 CRAGKIKESFELWMVMGKENCQ-----TVVSYNILIKGLFENGKVEEAISIWELLCKKGC 392

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
              +    + +  LC      + L +         + D    +++++G CK GR++EA+ 
Sbjct: 393 RPESTTYGVLIHGLCKNGRLNKALKIFKEAEDGPGKLDAYAYSSMVDGLCKEGRMDEAIS 452

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           ++N M    +   D      +I G +   ++++A+N  ++ M  +G SP IV+YN +++G
Sbjct: 453 IVNQMDKRGY-KLDPHVCNPLINGFVRASKLEDAINF-FREMECKGCSPTIVSYNTLIKG 510

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L +  R  EA      ML      D  T ++++DGLC+  +++ A   W   +      D
Sbjct: 511 LCKAERFSEAYSFVKEMLEKEWKPDMITCSLLMDGLCQEKKIEMALNLWQQALDKGFKPD 570

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
             +Y  ++ GLC   K+ +A+     +  S   PN+V  N +++G  K+    +A +I  
Sbjct: 571 ITMYNILMHGLCSVCKLEDALQLYSHMKRSTCVPNLVTRNTLMEGLYKVRDYEKASEIWD 630

Query: 481 EMRKNGLNPDAVTWRILDK 499
            + K+GL+PD +++ I  K
Sbjct: 631 CILKDGLHPDIISYNITIK 649



 Score =  191 bits (486), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 128/496 (25%), Positives = 247/496 (49%), Gaps = 12/496 (2%)

Query: 6   GLSRVGE---AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEM-RHCGVL 61
           G+ +VG+   A K+F +M  RG V +V  Y  LI G+ + G+ D   ++++ + + C V 
Sbjct: 195 GMVKVGDLLGALKVFDEMSVRGVVADVTCYNMLIDGFFKHGDYDKGKEIWERLVKDCSVY 254

Query: 62  PNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVN 121
           PN +TY++++ G+ +    + +     ++WERM + E    +   +++L+  LC  G ++
Sbjct: 255 PNVVTYNIMINGLCKCGRFDES----LEIWERMTKNER-EKDMFTYSSLIHGLCEAGNID 309

Query: 122 EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
              R+ +++ +   V +      M++  CR+G+   +  +  VM K     ++VSYN ++
Sbjct: 310 GAVRVYKEIVESSLVVDAVTHNAMLNGFCRAGKIKESFELWMVMGKEN-CQTVVSYNILI 368

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
            GL ++G    A  + E   + G  P   TY VL+ GLC    L KA K+ +        
Sbjct: 369 KGLFENGKVEEAISIWELLCKKGCRPESTTYGVLIHGLCKNGRLNKALKIFKEAEDGPGK 428

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
                 +  +  LC      E ++++  M +   + D    N +INGF +  ++E+A+  
Sbjct: 429 LDAYAYSSMVDGLCKEGRMDEAISIVNQMDKRGYKLDPHVCNPLINGFVRASKLEDAINF 488

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
             +M   K C+P  V++ T+I GL    R  EA + + + M ++ + P ++T + ++ GL
Sbjct: 489 FREMEC-KGCSPTIVSYNTLIKGLCKAERFSEAYSFVKE-MLEKEWKPDMITCSLLMDGL 546

Query: 362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
            + +++E A  ++   L  G   D T Y I++ GLC   +L++A + +  +   + + + 
Sbjct: 547 CQEKKIEMALNLWQQALDKGFKPDITMYNILMHGLCSVCKLEDALQLYSHMKRSTCVPNL 606

Query: 422 YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
                +++GL +     +A      ++  G+ P+I+ YN+ I G C  S   +A + L +
Sbjct: 607 VTRNTLMEGLYKVRDYEKASEIWDCILKDGLHPDIISYNITIKGLCSCSRISDAIEFLND 666

Query: 482 MRKNGLNPDAVTWRIL 497
               G+ P AVTW IL
Sbjct: 667 ALNRGILPTAVTWNIL 682



 Score =  171 bits (433), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 115/466 (24%), Positives = 223/466 (47%), Gaps = 10/466 (2%)

Query: 34  TLIHGYCRTGEMDVAYKVFDEMRHC-GVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWE 92
           T+I  Y +    + A   F  M+   G  P   +Y+ L+   +   + +RA         
Sbjct: 85  TVIKAYAKNKMSNKALDTFQNMQDIFGCKPGVRSYNTLLNAFVELNEWDRAESF-----S 139

Query: 93  RMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRS 152
           R  E  D+S N   +  L+   C++  + +   + + M       + F+ G +I+ + + 
Sbjct: 140 RYFESMDVSPNLQTYNILIKISCKKQQIEKAISLLDWMWSQNLKPDVFSYGTLINGMVKV 199

Query: 153 GRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQ-FGYLPSEHT 211
           G   GA +V   M  RG+   +  YN ++ G  KHG   +  ++ E  ++     P+  T
Sbjct: 200 GDLLGALKVFDEMSVRGVVADVTCYNMLIDGFFKHGDYDKGKEIWERLVKDCSVYPNVVT 259

Query: 212 YKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFML 271
           Y +++ GLC     +++ ++ + M   +        +  +  LC   N    + V   ++
Sbjct: 260 YNIMINGLCKCGRFDESLEIWERMTKNEREKDMFTYSSLIHGLCEAGNIDGAVRVYKEIV 319

Query: 272 QTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRI 331
           ++    D +T N ++NGFC+ G+I+E+ ++   MV GK      V++  +I GL   G++
Sbjct: 320 ESSLVVDAVTHNAMLNGFCRAGKIKESFELW--MVMGKENCQTVVSYNILIKGLFENGKV 377

Query: 332 QEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAI 391
           +EA++ +++++ ++G  P   TY  ++ GL +  R+ +A ++F          D+  Y+ 
Sbjct: 378 EEAIS-IWELLCKKGCRPESTTYGVLIHGLCKNGRLNKALKIFKEAEDGPGKLDAYAYSS 436

Query: 392 VIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 451
           ++DGLC+  ++DEA    + +       D +V   +I G  R+ K+ +A++F  E+   G
Sbjct: 437 MVDGLCKEGRMDEAISIVNQMDKRGYKLDPHVCNPLINGFVRASKLEDAINFFREMECKG 496

Query: 452 VTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            +P IV YN +I G CK     EAY  ++EM +    PD +T  +L
Sbjct: 497 CSPTIVSYNTLIKGLCKAERFSEAYSFVKEMLEKEWKPDMITCSLL 542



 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 103/422 (24%), Positives = 197/422 (46%), Gaps = 31/422 (7%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   R  E+ +++  M       ++ +Y++LIHG C  G +D A +V+ E+    +
Sbjct: 264 INGLCKCGRFDESLEIWERMTKNEREKDMFTYSSLIHGLCEAGNIDGAVRVYKEIVESSL 323

Query: 61  LPNSLTYSVLVRGVLRTRDVERA------------------NVLMFKLWERMKEEEDLSV 102
           + +++T++ ++ G  R   ++ +                  N+L+  L+E  K EE +S+
Sbjct: 324 VVDAVTHNAMLNGFCRAGKIKESFELWMVMGKENCQTVVSYNILIKGLFENGKVEEAISI 383

Query: 103 -----------NNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCR 151
                       +  +  L+  LC+ G +N+  +I ++   G    + +A   M+D LC+
Sbjct: 384 WELLCKKGCRPESTTYGVLIHGLCKNGRLNKALKIFKEAEDGPGKLDAYAYSSMVDGLCK 443

Query: 152 SGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHT 211
            GR   A  +V  M KRG        N +++G  +      A     E    G  P+  +
Sbjct: 444 EGRMDEAISIVNQMDKRGYKLDPHVCNPLINGFVRASKLEDAINFFREMECKGCSPTIVS 503

Query: 212 YKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFML 271
           Y  L++GLC      +A   ++ ML K+       C++ +  LC  K     LN+    L
Sbjct: 504 YNTLIKGLCKAERFSEAYSFVKEMLEKEWKPDMITCSLLMDGLCQEKKIEMALNLWQQAL 563

Query: 272 QTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRI 331
               +PD+   N +++G C + ++E+AL++ + M     C P+ VT  T++ GL  V R 
Sbjct: 564 DKGFKPDITMYNILMHGLCSVCKLEDALQLYSHMKRST-CVPNLVTRNTLMEGLYKV-RD 621

Query: 332 QEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAI 391
            E  + ++  + + G  P I++YN  ++GL    R+ +A E  N  L  G++  + T+ I
Sbjct: 622 YEKASEIWDCILKDGLHPDIISYNITIKGLCSCSRISDAIEFLNDALNRGILPTAVTWNI 681

Query: 392 VI 393
           ++
Sbjct: 682 LV 683



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 100/367 (27%), Positives = 182/367 (49%), Gaps = 12/367 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C   ++ E+ +L+  M  + +   VVSY  LI G    G+++ A  +++ +   G 
Sbjct: 334 LNGFCRAGKIKESFELWMVM-GKENCQTVVSYNILIKGLFENGKVEEAISIWELLCKKGC 392

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDL--SVNNAAFANLVDSLCREG 118
            P S TY VL+ G+ +   + +A     K++   KE ED    ++  A++++VD LC+EG
Sbjct: 393 RPESTTYGVLIHGLCKNGRLNKA----LKIF---KEAEDGPGKLDAYAYSSMVDGLCKEG 445

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
            ++E   I   M +     +   C  +I+   R+ +   A      M  +G +P++VSYN
Sbjct: 446 RMDEAISIVNQMDKRGYKLDPHVCNPLINGFVRASKLEDAINFFREMECKGCSPTIVSYN 505

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
           +++ GLCK      AY  ++E ++  + P   T  +L++GLC E  +E A  + Q  L K
Sbjct: 506 TLIKGLCKAERFSEAYSFVKEMLEKEWKPDMITCSLLMDGLCQEKKIEMALNLWQQALDK 565

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
                  + NI +  LC +    + L +   M ++ C P+++T NT++ G  K+   E+A
Sbjct: 566 GFKPDITMYNILMHGLCSVCKLEDALQLYSHMKRSTCVPNLVTRNTLMEGLYKVRDYEKA 625

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
            ++  D +      PD +++   I GL +  RI +A+  L   +  RG  P  VT+N ++
Sbjct: 626 SEIW-DCILKDGLHPDIISYNITIKGLCSCSRISDAIEFLNDAL-NRGILPTAVTWNILV 683

Query: 359 RGLFRLR 365
           R     R
Sbjct: 684 RAAVNFR 690



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/370 (25%), Positives = 171/370 (46%), Gaps = 25/370 (6%)

Query: 154 RNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGC----------MRAY---QLLEEG 200
           ++H A    +++R+      LVS+ S +  + K   C          ++AY   ++  + 
Sbjct: 40  KSHSAHVFHHILRRLAADSRLVSHVSRIVDIVKAQKCPCKEDVALTVIKAYAKNKMSNKA 99

Query: 201 IQ--------FGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLR 252
           +         FG  P   +Y  L+      ++ ++A    ++  S       +  NI ++
Sbjct: 100 LDTFQNMQDIFGCKPGVRSYNTLLNAFVELNEWDRAESFSRYFESMDVSPNLQTYNILIK 159

Query: 253 ALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCA 312
             C  +   + +++L +M     +PDV +  T+ING  K+G +  ALKV ++M      A
Sbjct: 160 ISCKKQQIEKAISLLDWMWSQNLKPDVFSYGTLINGMVKVGDLLGALKVFDEMSVRGVVA 219

Query: 313 PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKE 372
            D   +  +I G    G   +   +  +++      P +VTYN ++ GL +  R +E+ E
Sbjct: 220 -DVTCYNMLIDGFFKHGDYDKGKEIWERLVKDCSVYPNVVTYNIMINGLCKCGRFDESLE 278

Query: 373 VFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLC 432
           ++  M       D  TY+ +I GLCE+  +D A R + +IV  S + D   + AM+ G C
Sbjct: 279 IWERMTKNEREKDMFTYSSLIHGLCEAGNIDGAVRVYKEIVESSLVVDAVTHNAMLNGFC 338

Query: 433 RSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAV 492
           R+GKI E+   L+ ++       +V YN++I G  +     EA  I   + K G  P++ 
Sbjct: 339 RAGKIKESFE-LWMVMGKENCQTVVSYNILIKGLFENGKVEEAISIWELLCKKGCRPEST 397

Query: 493 TWRILDKLHG 502
           T+ +L  +HG
Sbjct: 398 TYGVL--IHG 405


>gi|357140125|ref|XP_003571621.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic-like [Brachypodium distachyon]
          Length = 814

 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 133/494 (26%), Positives = 236/494 (47%), Gaps = 40/494 (8%)

Query: 17  FFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHC-GVLPNSLTYSVLVRGVL 75
           F  + SR   P+V +   L+    RTG +    KVFDEMR C  V PN  +Y+ +++ + 
Sbjct: 181 FHVLSSRRASPSVKTCNALLEALARTGNLGATCKVFDEMRDCKTVTPNGYSYTSMIKALC 240

Query: 76  RTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKS 135
           +   V+    ++  L     ++   S     +  L+D+LC+ G V+E  R+   M + + 
Sbjct: 241 KVGKVDDGFKILSDLIHAGLQQ---SAGAVPYNLLMDALCKSGRVDEAIRLKGRMEESRV 297

Query: 136 VNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQ 195
                  G +I+ L RS R      ++  M   G+TP+ V  N ++   C+ G    A +
Sbjct: 298 APSMVTFGILINGLKRSDRFGEVGALLREMEGLGITPNEVICNELIDWHCRKGHFTEAIR 357

Query: 196 LLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALC 255
           L +E +      +  TY ++   LC E ++E+A ++L+ MLS      + + N       
Sbjct: 358 LFDEMVSKEMKSTAVTYNLIARALCKEGEMERAERILEEMLSTGMTIHSGLFN------- 410

Query: 256 LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA 315
                    +V+  +LQ                  + GR+E  ++++++MV  +   P+ 
Sbjct: 411 ---------SVVAGLLQ------------------RTGRLESVVRLISEMVK-RGMKPND 442

Query: 316 VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN 375
              T     L    R QEA+ +  +++ ++G    I T NA++ GL   + ++ A EV  
Sbjct: 443 ALMTACTKQLCQGRRHQEAVGIWLKML-EKGLCINIATSNALIHGLCEGKNMKGATEVLR 501

Query: 376 CMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG 435
            M+  G+  D+ TY I+I G C+ ++++EA +  DD++      D Y++ ++I   C  G
Sbjct: 502 TMVNKGMELDNITYNIMIQGCCKDSKIEEALKLRDDMIRKGFKPDAYMFNSIIHAYCDLG 561

Query: 436 KIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWR 495
           K+ EA+H L ++   GV P++V Y  +IDG CK    ++A + L E+   GL P+AV + 
Sbjct: 562 KMEEALHLLGQMKIEGVQPDVVSYGTIIDGYCKAKDIQKANEYLNELMACGLKPNAVIYN 621

Query: 496 ILDKLHGNRGNDFG 509
            L   +G  GN  G
Sbjct: 622 ALIGGYGRNGNISG 635



 Score =  191 bits (486), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 140/533 (26%), Positives = 246/533 (46%), Gaps = 47/533 (8%)

Query: 4   LCGLSRVGEAHKLFFDMKSRG--HVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVL 61
           LC + +V +  K+  D+   G       V Y  L+   C++G +D A ++   M    V 
Sbjct: 239 LCKVGKVDDGFKILSDLIHAGLQQSAGAVPYNLLMDALCKSGRVDEAIRLKGRMEESRVA 298

Query: 62  PNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVN 121
           P+ +T+ +L+ G+ R+        L+     R  E   ++ N      L+D  CR+G+  
Sbjct: 299 PSMVTFGILINGLKRSDRFGEVGALL-----REMEGLGITPNEVICNELIDWHCRKGHFT 353

Query: 122 EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
           E  R+ ++M   +  +       +  +LC+ G    A R++  M   G+T     +NS+V
Sbjct: 354 EAIRLFDEMVSKEMKSTAVTYNLIARALCKEGEMERAERILEEMLSTGMTIHSGLFNSVV 413

Query: 182 HGLCKHGGCMRAY-QLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
            GL +  G + +  +L+ E ++ G  P++       + LC     ++A  +   ML K  
Sbjct: 414 AGLLQRTGRLESVVRLISEMVKRGMKPNDALMTACTKQLCQGRRHQEAVGIWLKMLEKGL 473

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                  N  +  LC  KN      VL  M+    + D IT N +I G CK  +IEEALK
Sbjct: 474 CINIATSNALIHGLCEGKNMKGATEVLRTMVNKGMELDNITYNIMIQGCCKDSKIEEALK 533

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           + +DM+   F  PDA  F +II    ++G+++EAL+LL Q M   G  P +V+Y  ++ G
Sbjct: 534 LRDDMIRKGF-KPDAYMFNSIIHAYCDLGKMEEALHLLGQ-MKIEGVQPDVVSYGTIIDG 591

Query: 361 LFRLRRVEEAKE---------------VFNCMLG--------------------IGVVAD 385
             + + +++A E               ++N ++G                    IG+   
Sbjct: 592 YCKAKDIQKANEYLNELMACGLKPNAVIYNALIGGYGRNGNISGAIGVLDTMESIGIQPT 651

Query: 386 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV-YAAMIKGLCRSGKIHEAVHFL 444
           + TY  ++  +C +  +DEAK  ++     ++I    V Y  MI+GLC+ GK+ EA+++ 
Sbjct: 652 NVTYCSLMHWMCHAGLVDEAKTMFEQ-SRKNSIEVGVVGYTIMIQGLCKIGKMDEAMNYF 710

Query: 445 YELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            E+    + PN + Y  ++   CK     EA ++  EM  +G+ PD V++  L
Sbjct: 711 EEMRSRSIPPNKITYTTLMYAYCKSGNNEEASKLFDEMVSSGIVPDNVSYNTL 763



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 133/464 (28%), Positives = 231/464 (49%), Gaps = 20/464 (4%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           R GE   L  +M+  G  PN V    LI  +CR G    A ++FDEM    +   ++TY+
Sbjct: 316 RFGEVGALLREMEGLGITPNEVICNELIDWHCRKGHFTEAIRLFDEMVSKEMKSTAVTYN 375

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEE---EDLSVNNAAFANLVDSLC-REGYVNEVF 124
           ++ R + +  ++ERA        ER+ EE     +++++  F ++V  L  R G +  V 
Sbjct: 376 LIARALCKEGEMERA--------ERILEEMLSTGMTIHSGLFNSVVAGLLQRTGRLESVV 427

Query: 125 R-IAEDMPQGKSVNEEF--ACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
           R I+E + +G   N+    AC      LC+  R+  A  +   M ++GL  ++ + N+++
Sbjct: 428 RLISEMVKRGMKPNDALMTAC---TKQLCQGRRHQEAVGIWLKMLEKGLCINIATSNALI 484

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
           HGLC+      A ++L   +  G      TY ++++G C +S +E+A K+   M+ K   
Sbjct: 485 HGLCEGKNMKGATEVLRTMVNKGMELDNITYNIMIQGCCKDSKIEEALKLRDDMIRKGFK 544

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
               + N  + A C +    E L++L  M     QPDV++  T+I+G+CK   I++A + 
Sbjct: 545 PDAYMFNSIIHAYCDLGKMEEALHLLGQMKIEGVQPDVVSYGTIIDGYCKAKDIQKANEY 604

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
           LN+++A     P+AV +  +I G    G I  A+ +L   M   G  P  VTY +++  +
Sbjct: 605 LNELMACGL-KPNAVIYNALIGGYGRNGNISGAIGVL-DTMESIGIQPTNVTYCSLMHWM 662

Query: 362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
                V+EAK +F       +      Y I+I GLC+  ++DEA  +++++   S   + 
Sbjct: 663 CHAGLVDEAKTMFEQSRKNSIEVGVVGYTIMIQGLCKIGKMDEAMNYFEEMRSRSIPPNK 722

Query: 422 YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDG 465
             Y  ++   C+SG   EA     E+V SG+ P+ V YN ++ G
Sbjct: 723 ITYTTLMYAYCKSGNNEEASKLFDEMVSSGIVPDNVSYNTLVTG 766



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 111/226 (49%), Gaps = 9/226 (3%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C L ++ EA  L   MK  G  P+VVSY T+I GYC+  ++  A +  +E+  CG+ PN+
Sbjct: 558 CDLGKMEEALHLLGQMKIEGVQPDVVSYGTIIDGYCKAKDIQKANEYLNELMACGLKPNA 617

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           + Y+ L+ G  R  ++  A  ++  +     E   +   N  + +L+  +C  G V+E  
Sbjct: 618 VIYNALIGGYGRNGNISGAIGVLDTM-----ESIGIQPTNVTYCSLMHWMCHAGLVDEAK 672

Query: 125 RIAEDMPQGKSVNEEFACGH--MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
            + E     K+  E    G+  MI  LC+ G+   A      MR R + P+ ++Y ++++
Sbjct: 673 TMFEQ--SRKNSIEVGVVGYTIMIQGLCKIGKMDEAMNYFEEMRSRSIPPNKITYTTLMY 730

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKA 228
             CK G    A +L +E +  G +P   +Y  LV G      L+KA
Sbjct: 731 AYCKSGNNEEASKLFDEMVSSGIVPDNVSYNTLVTGFSQVDSLDKA 776



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 85/381 (22%), Positives = 165/381 (43%), Gaps = 50/381 (13%)

Query: 3   QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           QLC   R  EA  ++  M  +G   N+ +   LIHG C    M  A +V   M + G+  
Sbjct: 451 QLCQGRRHQEAVGIWLKMLEKGLCINIATSNALIHGLCEGKNMKGATEVLRTMVNKGMEL 510

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           +++TY+++++G                                         C++  + E
Sbjct: 511 DNITYNIMIQGC----------------------------------------CKDSKIEE 530

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
             ++ +DM +     + +    +I + C  G+   A  ++  M+  G+ P +VSY +I+ 
Sbjct: 531 ALKLRDDMIRKGFKPDAYMFNSIIHAYCDLGKMEEALHLLGQMKIEGVQPDVVSYGTIID 590

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           G CK     +A + L E +  G  P+   Y  L+ G     ++  A  VL  M S   + 
Sbjct: 591 GYCKAKDIQKANEYLNELMACGLKPNAVIYNALIGGYGRNGNISGAIGVLDTMES-IGIQ 649

Query: 243 RTRI--CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
            T +  C++ +  +C      E   +     +   +  V+    +I G CK+G+++EA+ 
Sbjct: 650 PTNVTYCSL-MHWMCHAGLVDEAKTMFEQSRKNSIEVGVVGYTIMIQGLCKIGKMDEAMN 708

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
              +M + +   P+ +T+TT+++     G  +EA + L+  M   G  P  V+YN ++ G
Sbjct: 709 YFEEMRS-RSIPPNKITYTTLMYAYCKSGNNEEA-SKLFDEMVSSGIVPDNVSYNTLVTG 766

Query: 361 LFRL----RRVEEAKEVFNCM 377
             ++    + +E+A E+ + M
Sbjct: 767 FSQVDSLDKAIEKAAEISSIM 787



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 65/138 (47%), Gaps = 5/138 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M  +C    V EA  +F   +       VV YT +I G C+ G+MD A   F+EMR   +
Sbjct: 659 MHWMCHAGLVDEAKTMFEQSRKNSIEVGVVGYTIMIQGLCKIGKMDEAMNYFEEMRSRSI 718

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +TY+ L+    ++ + E A+    KL++ M     +  +N ++  LV    +   +
Sbjct: 719 PPNKITYTTLMYAYCKSGNNEEAS----KLFDEMV-SSGIVPDNVSYNTLVTGFSQVDSL 773

Query: 121 NEVFRIAEDMPQGKSVNE 138
           ++    A ++    + N+
Sbjct: 774 DKAIEKAAEISSIMTQND 791


>gi|356529689|ref|XP_003533421.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Glycine max]
          Length = 892

 Score =  192 bits (487), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 128/479 (26%), Positives = 226/479 (47%), Gaps = 11/479 (2%)

Query: 27  PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVL 86
           PN+++  T+++ YC+ G M VA   F  +  C   P+  TY+ LV G  R  DVERA  +
Sbjct: 187 PNLITLNTMLNSYCKLGNMAVARLFFVRILRCEPGPDLFTYTSLVLGYCRNDDVERACGV 246

Query: 87  MFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMI 146
              +  R         N  ++ NL+  LC  G ++E       M +            ++
Sbjct: 247 FCVMPRR---------NAVSYTNLIHGLCEAGKLHEALEFWARMREDGCFPTVRTYTVLV 297

Query: 147 DSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL 206
            +LC SGR   A  +   MR+RG  P++ +Y  ++  LCK G    A ++L E ++ G  
Sbjct: 298 CALCESGRELEALSLFGEMRERGCEPNVYTYTVLIDYLCKEGRMDEALKMLNEMVEKGVA 357

Query: 207 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 266
           PS   +  L+   C    +E A  VL  M SKK     R  N  +   C  K+    + +
Sbjct: 358 PSVVPFNALIGSYCKRGMMEDAVGVLGLMESKKVCPNVRTYNELICGFCRGKSMDRAMAL 417

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
           L  M++++  PDV+T NT+I+G C++G ++ A ++   M+   F +PD  TF   +  L 
Sbjct: 418 LNKMVESKLSPDVVTYNTLIHGLCEVGVVDSASRLFRLMIRDGF-SPDQWTFNAFMVCLC 476

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
            +GR+ EA  +L + + ++        Y A++ G  +  ++E A  +F  ML    + +S
Sbjct: 477 RMGRVGEAHQIL-ESLKEKHVKANEHAYTALIDGYCKAGKIEHAASLFKRMLAEECLPNS 535

Query: 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE 446
            T+ ++IDGL +  ++ +A    +D+         + Y  +++ + +      A   L  
Sbjct: 536 ITFNVMIDGLRKEGKVQDAMLLVEDMAKFDVKPTLHTYNILVEEVLKEYDFDRANEILNR 595

Query: 447 LVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
           L+ SG  PN+V Y   I   C      EA +++ +++  G+  D+  + +L   +G  G
Sbjct: 596 LISSGYQPNVVTYTAFIKAYCSQGRLEEAEEMVIKIKNEGVLLDSFIYNLLINAYGCMG 654



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 132/555 (23%), Positives = 231/555 (41%), Gaps = 59/555 (10%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   R+ EA K+  +M  +G  P+VV +  LI  YC+ G M+ A  V   M    V
Sbjct: 332 IDYLCKEGRMDEALKMLNEMVEKGVAPSVVPFNALIGSYCKRGMMEDAVGVLGLMESKKV 391

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWE---------------------------- 92
            PN  TY+ L+ G  R + ++RA  L+ K+ E                            
Sbjct: 392 CPNVRTYNELICGFCRGKSMDRAMALLNKMVESKLSPDVVTYNTLIHGLCEVGVVDSASR 451

Query: 93  --RMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC 150
             R+   +  S +   F   +  LCR G V E  +I E + +      E A   +ID  C
Sbjct: 452 LFRLMIRDGFSPDQWTFNAFMVCLCRMGRVGEAHQILESLKEKHVKANEHAYTALIDGYC 511

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
           ++G+   A+ +   M      P+ +++N ++ GL K G    A  L+E+  +F   P+ H
Sbjct: 512 KAGKIEHAASLFKRMLAEECLPNSITFNVMIDGLRKEGKVQDAMLLVEDMAKFDVKPTLH 571

Query: 211 TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM 270
           TY +LVE +  E D ++A ++L  ++S            +++A C      E   +++ +
Sbjct: 572 TYNILVEEVLKEYDFDRANEILNRLISSGYQPNVVTYTAFIKAYCSQGRLEEAEEMVIKI 631

Query: 271 LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR 330
                  D    N +IN +  MG ++ A  VL  M  G  C P  +T++ ++  L+    
Sbjct: 632 KNEGVLLDSFIYNLLINAYGCMGLLDSAFGVLRRMF-GTGCEPSYLTYSILMKHLVIEKH 690

Query: 331 IQEALN----------------------------LLYQVMPQRGYSPGIVTYNAVLRGLF 362
            +E  N                            +L++ M + G  P + TY+ ++ GL 
Sbjct: 691 KKEGSNPVGLDVSLTNISVDNTDIWSKIDFGITTVLFEKMAECGCVPNLNTYSKLINGLC 750

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
           ++ R+  A  +++ M   G+      +  ++   C+     EA    D ++  S++    
Sbjct: 751 KVGRLNVAFSLYHHMREGGISPSEIIHNSLLSSCCKLGMFGEAVTLLDSMMECSHLAHLE 810

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
            Y  +I GL       +A      L+  G   + V + V+IDG  K     +  ++L  M
Sbjct: 811 SYKLLICGLFEQMNKEKAEAVFCSLLRCGYNYDEVAWKVLIDGLAKTGYVDQCSELLNLM 870

Query: 483 RKNGLNPDAVTWRIL 497
            KNG      T+ +L
Sbjct: 871 EKNGCRLHPETYSML 885



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 56/238 (23%), Positives = 94/238 (39%), Gaps = 43/238 (18%)

Query: 295 IEEALKVLNDMVAGKFC-APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVT 353
           +  A  V N M+  K C +P   TF      LLN+ R             Q  +   + +
Sbjct: 102 LRAAENVRNSMI--KSCTSPHDATF------LLNLLRRMNTAAAAADHQHQLAFKLSLTS 153

Query: 354 YNAVLRGLFRLRRVEEAKEVFNCML---GIGVVADSTTYAIVIDGLCESNQLDEAKRFWD 410
           YN +L  L R   V+E   ++  ML   G  V  +  T   +++  C+   +  A+ F+ 
Sbjct: 154 YNRLLMCLSRFSMVDEMISLYKEMLTDNGNSVFPNLITLNTMLNSYCKLGNMAVARLFFV 213

Query: 411 DIVWPSNIHDNYVYAA-------------------------------MIKGLCRSGKIHE 439
            I+      D + Y +                               +I GLC +GK+HE
Sbjct: 214 RILRCEPGPDLFTYTSLVLGYCRNDDVERACGVFCVMPRRNAVSYTNLIHGLCEAGKLHE 273

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           A+ F   + + G  P +  Y V++   C+   + EA  +  EMR+ G  P+  T+ +L
Sbjct: 274 ALEFWARMREDGCFPTVRTYTVLVCALCESGRELEALSLFGEMRERGCEPNVYTYTVL 331



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 80/188 (42%), Gaps = 43/188 (22%)

Query: 16  LFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVL 75
           LF  M   G VPN+ +Y+ LI+G C+ G ++VA+ ++  MR  G+ P+ + ++ L+    
Sbjct: 726 LFEKMAECGCVPNLNTYSKLINGLCKVGRLNVAFSLYHHMREGGISPSEIIHNSLLSSCC 785

Query: 76  RT-------------------RDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCR 116
           +                      +E   +L+  L+E+M +E+      A F     SL R
Sbjct: 786 KLGMFGEAVTLLDSMMECSHLAHLESYKLLICGLFEQMNKEKA----EAVFC----SLLR 837

Query: 117 EGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVS 176
            GY  +                E A   +ID L ++G     S ++ +M K G      +
Sbjct: 838 CGYNYD----------------EVAWKVLIDGLAKTGYVDQCSELLNLMEKNGCRLHPET 881

Query: 177 YNSIVHGL 184
           Y+ ++  L
Sbjct: 882 YSMLMQEL 889


>gi|125569067|gb|EAZ10582.1| hypothetical protein OsJ_00414 [Oryza sativa Japonica Group]
          Length = 1003

 Score =  192 bits (487), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 129/513 (25%), Positives = 244/513 (47%), Gaps = 11/513 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D+LC   R  +A +LF +M  RG  PN V+Y  LIH  C+ G ++ A  +FD+MR  G+
Sbjct: 345 IDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGI 404

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
                 Y+ L+ G  +   ++RA  L+  +      +E L+   A+++ L+  LCR G +
Sbjct: 405 KVTVYPYNSLINGYCKQGSLDRARGLLSGM-----VKEGLTPTAASYSPLIAGLCRNGDL 459

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +    +  +M +       +    +I+  C+  +   A+R+   M    + P+ V++N +
Sbjct: 460 SSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVM 519

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G C  G   +A+QL ++ ++ G  P  +TY+ L+ GLC  S + KA + +  + +   
Sbjct: 520 IEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSYA 579

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           V         L         TE  ++   M     + D+++   ++    K    E++  
Sbjct: 580 VLNNFSLTALLYGFFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCV 639

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +  +M   +   PD + +T +I  L     + +ALN   Q M   GYSP  VT+  ++  
Sbjct: 640 LFREM-KEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQ-MVVDGYSPNTVTHTVLINN 697

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L +   +  A+ +   ML   V+ +  TY   +D       +++AK     ++   ++  
Sbjct: 698 LCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHSAML-QGHLAS 756

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              +  +IKGLC++GKI EA+  + ++ +SG +P+ + Y+ +I   CK+    +A+++  
Sbjct: 757 IVSFNILIKGLCKAGKIQEAIDLMSKITESGFSPDCISYSTIIHELCKMGDINKAFELWN 816

Query: 481 EMRKNGLNPDAVTWRILDK---LHGNRGNDFGL 510
           EM   GL PD V + I  +   +HG      G+
Sbjct: 817 EMLYKGLKPDVVAYNIFIRWCNVHGESDKALGI 849



 Score =  164 bits (416), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 123/561 (21%), Positives = 240/561 (42%), Gaps = 66/561 (11%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M  LC   RV EA ++   M + G   + V+Y TL++G+CR  E+++A ++  +M   G 
Sbjct: 240 MYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEMALRITHDMIRLGF 299

Query: 61  LPNSLTYSVLVRGVLRTRDVERA-------------------NVLMFKLW--ERMKEEE- 98
           +P+    S ++  + +   VE A                   N L+ KL   ER  + + 
Sbjct: 300 VPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFDDADR 359

Query: 99  --------DLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC 150
                    L  N   +A L+ +LC+ G + +   + + M         +    +I+  C
Sbjct: 360 LFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYC 419

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
           + G    A  ++  M K GLTP+  SY+ ++ GLC++G      +L  E  + G   + +
Sbjct: 420 KQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSCMELHREMAERGIAWNNY 479

Query: 211 TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM 270
           T+  L+ G C +  +++A ++   M+    +      N+ +   CL+ N  +   +   M
Sbjct: 480 TFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQM 539

Query: 271 LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR 330
           ++   +PD  T  ++I+G C    + +A + + D+    +   +  + T +++G    GR
Sbjct: 540 VEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADL-ENSYAVLNNFSLTALLYGFFREGR 598

Query: 331 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYA 390
             E  + L+  M  RG    +V++  ++    +    E++  +F  M   GV  D   Y 
Sbjct: 599 FTETYH-LWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVLFREMKEQGVKPDDIFYT 657

Query: 391 IVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 450
            +ID L +   + +A   WD +V      +   +  +I  LC+SG +  A     E++  
Sbjct: 658 CMIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAG 717

Query: 451 GVTPN----------------------------------IVCYNVVIDGACKLSMKREAY 476
            V PN                                  IV +N++I G CK    +EA 
Sbjct: 718 NVLPNKFTYNCFLDYFATEGDMEKAKDLHSAMLQGHLASIVSFNILIKGLCKAGKIQEAI 777

Query: 477 QILREMRKNGLNPDAVTWRIL 497
            ++ ++ ++G +PD +++  +
Sbjct: 778 DLMSKITESGFSPDCISYSTI 798



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 121/482 (25%), Positives = 220/482 (45%), Gaps = 42/482 (8%)

Query: 13  AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVR 72
           A  L   M+S G   + V Y  L++G C+   +  A +V + M + GV  + +TY  LV 
Sbjct: 217 ARGLVVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVY 276

Query: 73  GVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQ 132
           G  R  ++E A  +   +   ++     S  N +F  ++D L ++  V E F +A  +  
Sbjct: 277 GFCRMEELEMALRITHDM---IRLGFVPSEANCSF--MIDELRKKELVEEAFSLACKLGD 331

Query: 133 GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMR 192
              V   FA   +ID LC++ R   A R+   M  RGL P+ V+Y  ++H LCK G    
Sbjct: 332 LGMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIED 391

Query: 193 AYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLR 252
           A  L ++    G   + + Y  L+ G C +  L++AR                       
Sbjct: 392 ALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRAR----------------------- 428

Query: 253 ALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCA 312
                        +L  M++    P   + + +I G C+ G +   +++  +M A +  A
Sbjct: 429 ------------GLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSCMELHREM-AERGIA 475

Query: 313 PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKE 372
            +  TFT +I G     ++ EA  L +  M      P  VT+N ++ G   +  + +A +
Sbjct: 476 WNNYTFTALINGFCKDKKMDEAARL-FDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQ 534

Query: 373 VFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLC 432
           +++ M+ +G+  D+ TY  +I GLC ++ + +A  F  D+     + +N+   A++ G  
Sbjct: 535 LYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLTALLYGFF 594

Query: 433 RSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAV 492
           R G+  E  H   E+   GV  ++V + +++  A K   K ++  + REM++ G+ PD +
Sbjct: 595 REGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVLFREMKEQGVKPDDI 654

Query: 493 TW 494
            +
Sbjct: 655 FY 656



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 106/398 (26%), Positives = 190/398 (47%), Gaps = 2/398 (0%)

Query: 100 LSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGAS 159
           ++VN    + ++ SL +         + + M Q     +E+     I + C S    GA 
Sbjct: 159 ITVNQYTASQILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNLDGAR 218

Query: 160 RVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGL 219
            +V  M   G+  S V YN +++GLCK+     A ++    +  G    E TY+ LV G 
Sbjct: 219 GLVVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGF 278

Query: 220 CGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDV 279
           C   +LE A ++   M+    V     C+  +  L   +   E  ++   +      P+V
Sbjct: 279 CRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNV 338

Query: 280 ITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLY 339
              N +I+  CK  R ++A ++  +M AG+   P+ VT+  +I  L   G I++AL  L+
Sbjct: 339 FAYNALIDKLCKNERFDDADRLFKEM-AGRGLEPNEVTYAILIHALCKRGMIEDAL-CLF 396

Query: 340 QVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCES 399
             M  +G    +  YN+++ G  +   ++ A+ + + M+  G+   + +Y+ +I GLC +
Sbjct: 397 DKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRN 456

Query: 400 NQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCY 459
             L        ++       +NY + A+I G C+  K+ EA     +++DS V PN V +
Sbjct: 457 GDLSSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTF 516

Query: 460 NVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           NV+I+G C +   R+A+Q+  +M + GL PD  T+R L
Sbjct: 517 NVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSL 554



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 98/219 (44%), Gaps = 6/219 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D L     + +A   +  M   G+ PN V++T LI+  C++G +  A  +  EM    V
Sbjct: 660 IDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGNV 719

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           LPN  TY+  +       D+E+A      L   M +    S+   +F  L+  LC+ G +
Sbjct: 720 LPNKFTYNCFLDYFATEGDMEKAK----DLHSAMLQGHLASI--VSFNILIKGLCKAGKI 773

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E   +   + +     +  +   +I  LC+ G  + A  +   M  +GL P +V+YN  
Sbjct: 774 QEAIDLMSKITESGFSPDCISYSTIIHELCKMGDINKAFELWNEMLYKGLKPDVVAYNIF 833

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGL 219
           +     HG   +A  +    I+ G  P+  TY+ L+ G+
Sbjct: 834 IRWCNVHGESDKALGIYTNMIRSGVQPNWDTYRALLSGI 872



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 60/126 (47%), Gaps = 2/126 (1%)

Query: 373 VFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH-DNYVYAAMIKGL 431
           V    L  G+  +  T + ++  L +  Q   A+  +D ++  S +H D YVY A I+  
Sbjct: 150 VLGLSLSSGITVNQYTASQILFSLVKIRQFALARDLFDKML-QSGVHLDEYVYTAGIRAY 208

Query: 432 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 491
           C S  +  A   +  +   GV  + V YNV++ G CK    +EA ++   M   G+  D 
Sbjct: 209 CESRNLDGARGLVVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADE 268

Query: 492 VTWRIL 497
           VT+R L
Sbjct: 269 VTYRTL 274


>gi|356544378|ref|XP_003540629.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Glycine max]
          Length = 903

 Score =  192 bits (487), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 132/529 (24%), Positives = 250/529 (47%), Gaps = 32/529 (6%)

Query: 8   SRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTY 67
           SR+ +A  +   M +   +P V + + L++G  +  +    +++FDE  + GV P+  T 
Sbjct: 169 SRIFDAVVIVKLMFANNLLPEVRTLSALLNGLLKVRKFITVWELFDESVNAGVRPDPYTC 228

Query: 68  SVLVRGVLRTRDVERA-------------------NVLMFKL--WERMKEE--------- 97
           S +VR +   +D  RA                   NVL+  L   +R+ E          
Sbjct: 229 SAVVRSMCELKDFLRAKEKIRWMEANGFDLSIVTYNVLIHGLCKGDRVSEAVEVKRSLGG 288

Query: 98  EDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHG 157
           + L+ +   +  LV   CR        ++ ++M +      E A   ++D L + G+   
Sbjct: 289 KGLAADVVTYCTLVLGFCRLQQFEAGIQLMDEMVELGFSPTEAAVSGLVDGLRKQGKIDD 348

Query: 158 ASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVE 217
           A  +V  + + G  P+L  YN++++ LCK G   +A  L          P+  TY +L++
Sbjct: 349 AYELVVKVGRFGFVPNLFVYNALINSLCKGGDLDKAELLYSNMSLMNLRPNGITYSILID 408

Query: 218 GLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQP 277
             C    L+ A      M+     +     N  +   C   + +   ++ + M     +P
Sbjct: 409 SFCRSGRLDVAISYFDRMIQDGIGETVYAYNSLINGQCKFGDLSAAESLFIEMTNKGVEP 468

Query: 278 DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNL 337
              T  ++I+G+CK  ++++A K+ N M+      P+  TFT +I GL +  ++ EA + 
Sbjct: 469 TATTFTSLISGYCKDLQVQKAFKLYNKMIDNGI-TPNVYTFTALISGLCSTNKMAEA-SE 526

Query: 338 LYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLC 397
           L+  + +R   P  VTYN ++ G  R  ++++A E+   M   G+V D+ TY  +I GLC
Sbjct: 527 LFDELVERKIKPTEVTYNVLIEGYCRDGKIDKAFELLEDMHQKGLVPDTYTYRPLISGLC 586

Query: 398 ESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIV 457
            + ++ +AK F DD+   +   +   Y+A++ G C+ G++ EA+    E++  G+  ++V
Sbjct: 587 STGRVSKAKDFIDDLHKQNVKLNEMCYSALLHGYCQEGRLMEALSASCEMIQRGINMDLV 646

Query: 458 CYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           C+ V+IDGA K   ++  + +L++M   GL PD V +  +   +   G+
Sbjct: 647 CHAVLIDGALKQPDRKTFFDLLKDMHDQGLRPDNVIYTSMIDTYSKEGS 695



 Score =  191 bits (484), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 130/526 (24%), Positives = 242/526 (46%), Gaps = 45/526 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC    + +A  L+ +M      PN ++Y+ LI  +CR+G +DVA   FD M   G+
Sbjct: 372 INSLCKGGDLDKAELLYSNMSLMNLRPNGITYSILIDSFCRSGRLDVAISYFDRMIQDGI 431

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
                 Y+ L+ G  +  D+  A  L  ++  +  E          F +L+   C++  V
Sbjct: 432 GETVYAYNSLINGQCKFGDLSAAESLFIEMTNKGVEP-----TATTFTSLISGYCKDLQV 486

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            + F++   M         +    +I  LC + +   AS +   + +R + P+ V+YN +
Sbjct: 487 QKAFKLYNKMIDNGITPNVYTFTALISGLCSTNKMAEASELFDELVERKIKPTEVTYNVL 546

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G C+ G   +A++LLE+  Q G +P  +TY+ L+ GLC    + KA+  +   L K++
Sbjct: 547 IEGYCRDGKIDKAFELLEDMHQKGLVPDTYTYRPLISGLCSTGRVSKAKDFID-DLHKQN 605

Query: 241 VDRTRIC-NIYLRALC---------------------------------LIKNP--TELL 264
           V    +C +  L   C                                  +K P      
Sbjct: 606 VKLNEMCYSALLHGYCQEGRLMEALSASCEMIQRGINMDLVCHAVLIDGALKQPDRKTFF 665

Query: 265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 324
           ++L  M     +PD +   ++I+ + K G  ++A +  + MV  + C P+ VT+T ++ G
Sbjct: 666 DLLKDMHDQGLRPDNVIYTSMIDTYSKEGSFKKAFECWDLMVTEE-CFPNVVTYTALMNG 724

Query: 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 384
           L   G +  A  LL++ M      P  +TY   L  L +   ++EA  + + ML  G++A
Sbjct: 725 LCKAGEMDRA-GLLFKRMQAANVPPNSITYGCFLDNLTKEGNMKEAIGLHHAMLK-GLLA 782

Query: 385 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFL 444
           ++ T+ I+I G C+  +  EA +   ++       D   Y+ +I   CRSG +  +V   
Sbjct: 783 NTVTHNIIIRGFCKLGRFHEATKVLSEMTENGIFPDCVTYSTLIYEYCRSGNVGASVKLW 842

Query: 445 YELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD 490
             +++ G+ P++V YN++I G C      +A+++  +M + G+ PD
Sbjct: 843 DTMLNRGLEPDLVAYNLLIYGCCVNGELDKAFELRDDMLRRGIIPD 888



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 143/519 (27%), Positives = 240/519 (46%), Gaps = 28/519 (5%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   RV EA ++   +  +G   +VV+Y TL+ G+CR  + +   ++ DEM   G  P 
Sbjct: 270 LCKGDRVSEAVEVKRSLGGKGLAADVVTYCTLVLGFCRLQQFEAGIQLMDEMVELGFSPT 329

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
               S LV G+ +   ++ A  L+ K+  R     +L V NA    L++SLC+ G +++ 
Sbjct: 330 EAAVSGLVDGLRKQGKIDDAYELVVKVG-RFGFVPNLFVYNA----LINSLCKGGDLDKA 384

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             +  +M              +IDS CRSGR   A      M + G+  ++ +YNS+++G
Sbjct: 385 ELLYSNMSLMNLRPNGITYSILIDSFCRSGRLDVAISYFDRMIQDGIGETVYAYNSLING 444

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK G    A  L  E    G  P+  T+  L+ G C +  ++KA     F L  K +D 
Sbjct: 445 QCKFGDLSAAESLFIEMTNKGVEPTATTFTSLISGYCKDLQVQKA-----FKLYNKMIDN 499

Query: 244 TRICNIY-----LRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
               N+Y     +  LC      E   +   +++ + +P  +T N +I G+C+ G+I++A
Sbjct: 500 GITPNVYTFTALISGLCSTNKMAEASELFDELVERKIKPTEVTYNVLIEGYCRDGKIDKA 559

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
            ++L DM   K   PD  T+  +I GL + GR+ +A + +  +  Q       + Y+A+L
Sbjct: 560 FELLEDM-HQKGLVPDTYTYRPLISGLCSTGRVSKAKDFIDDLHKQ-NVKLNEMCYSALL 617

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ----LDEAKRFWDDIVW 414
            G  +  R+ EA      M+  G+  D   +A++IDG  +        D  K   D  + 
Sbjct: 618 HGYCQEGRLMEALSASCEMIQRGINMDLVCHAVLIDGALKQPDRKTFFDLLKDMHDQGLR 677

Query: 415 PSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKRE 474
           P    DN +Y +MI    + G   +A      +V     PN+V Y  +++G CK      
Sbjct: 678 P----DNVIYTSMIDTYSKEGSFKKAFECWDLMVTEECFPNVVTYTALMNGLCKAGEMDR 733

Query: 475 AYQILREMRKNGLNPDAVTWR-ILDKL--HGNRGNDFGL 510
           A  + + M+   + P+++T+   LD L   GN     GL
Sbjct: 734 AGLLFKRMQAANVPPNSITYGCFLDNLTKEGNMKEAIGL 772



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 122/477 (25%), Positives = 219/477 (45%), Gaps = 58/477 (12%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C    +  A  LF +M ++G  P   ++T+LI GYC+  ++  A+K++++M   G+ PN 
Sbjct: 446 CKFGDLSAAESLFIEMTNKGVEPTATTFTSLISGYCKDLQVQKAFKLYNKMIDNGITPNV 505

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
            T++ L+ G+  T  +  A+ L  +L ER  +  +++ N      L++  CR+G +++ F
Sbjct: 506 YTFTALISGLCSTNKMAEASELFDELVERKIKPTEVTYNV-----LIEGYCRDGKIDKAF 560

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
            + EDM Q   V + +    +I  LC +GR   A   +  + K+ +  + + Y++++HG 
Sbjct: 561 ELLEDMHQKGLVPDTYTYRPLISGLCSTGRVSKAKDFIDDLHKQNVKLNEMCYSALLHGY 620

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM----LSKKD 240
           C+ G  M A     E IQ G       + VL++G   + D +    +L+ M    L   +
Sbjct: 621 CQEGRLMEALSASCEMIQRGINMDLVCHAVLIDGALKQPDRKTFFDLLKDMHDQGLRPDN 680

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           V  T + + Y +     K           M+  +C P+V+T   ++NG CK G ++ A  
Sbjct: 681 VIYTSMIDTYSKEGSFKKA----FECWDLMVTEECFPNVVTYTALMNGLCKAGEMDRAGL 736

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +   M A     P+++T+   +  L   G ++EA+ L + ++  +G     VT+N ++RG
Sbjct: 737 LFKRMQAAN-VPPNSITYGCFLDNLTKEGNMKEAIGLHHAML--KGLLANTVTHNIIIRG 793

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYA------------------------------ 390
             +L R  EA +V + M   G+  D  TY+                              
Sbjct: 794 FCKLGRFHEATKVLSEMTENGIFPDCVTYSTLIYEYCRSGNVGASVKLWDTMLNRGLEPD 853

Query: 391 -----IVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVH 442
                ++I G C + +LD+A    DD++    I DN       K L + G I EA H
Sbjct: 854 LVAYNLLIYGCCVNGELDKAFELRDDMLRRGIIPDN-------KYLQKKGTIFEATH 903



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 106/385 (27%), Positives = 194/385 (50%), Gaps = 12/385 (3%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC  +++ EA +LF ++  R   P  V+Y  LI GYCR G++D A+++ ++M   G++P+
Sbjct: 515 LCSTNKMAEASELFDELVERKIKPTEVTYNVLIEGYCRDGKIDKAFELLEDMHQKGLVPD 574

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           + TY  L+ G+  T  V +A   +  L      ++++ +N   ++ L+   C+EG + E 
Sbjct: 575 TYTYRPLISGLCSTGRVSKAKDFIDDL-----HKQNVKLNEMCYSALLHGYCQEGRLMEA 629

Query: 124 FRIAEDMPQGKSVNEEFAC-GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
              + +M Q + +N +  C   +ID   +         ++  M  +GL P  V Y S++ 
Sbjct: 630 LSASCEMIQ-RGINMDLVCHAVLIDGALKQPDRKTFFDLLKDMHDQGLRPDNVIYTSMID 688

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
              K G   +A++  +  +     P+  TY  L+ GLC   ++++A  + + M +     
Sbjct: 689 TYSKEGSFKKAFECWDLMVTEECFPNVVTYTALMNGLCKAGEMDRAGLLFKRMQAANVPP 748

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
            +     +L  L    N  E + +   ML+     + +T N +I GFCK+GR  EA KVL
Sbjct: 749 NSITYGCFLDNLTKEGNMKEAIGLHHAMLK-GLLANTVTHNIIIRGFCKLGRFHEATKVL 807

Query: 303 NDMVA-GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
           ++M   G F  PD VT++T+I+     G +  ++  L+  M  RG  P +V YN ++ G 
Sbjct: 808 SEMTENGIF--PDCVTYSTLIYEYCRSGNVGASVK-LWDTMLNRGLEPDLVAYNLLIYGC 864

Query: 362 FRLRRVEEAKEVFNCMLGIGVVADS 386
                +++A E+ + ML  G++ D+
Sbjct: 865 CVNGELDKAFELRDDMLRRGIIPDN 889



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 98/435 (22%), Positives = 203/435 (46%), Gaps = 25/435 (5%)

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           ++ +Y+++V  ++ +R    AN L+  L                       L RE +   
Sbjct: 102 STTSYAIMVHALVHSRLFWPANSLLHTL-----------------------LLRESHPKC 138

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
           VF    D  +    +       ++ +   S R   A  +V +M    L P + + +++++
Sbjct: 139 VFSHFLDSYKRCKFSSTLGFNLLVQNYVLSSRIFDAVVIVKLMFANNLLPEVRTLSALLN 198

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           GL K    +  ++L +E +  G  P  +T   +V  +C   D  +A++ +++M +     
Sbjct: 199 GLLKVRKFITVWELFDESVNAGVRPDPYTCSAVVRSMCELKDFLRAKEKIRWMEANGFDL 258

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
                N+ +  LC     +E + V   +       DV+T  T++ GFC++ + E  ++++
Sbjct: 259 SIVTYNVLIHGLCKGDRVSEAVEVKRSLGGKGLAADVVTYCTLVLGFCRLQQFEAGIQLM 318

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
           ++MV   F +P     + ++ GL   G+I +A  L+ +V  + G+ P +  YNA++  L 
Sbjct: 319 DEMVELGF-SPTEAAVSGLVDGLRKQGKIDDAYELVVKV-GRFGFVPNLFVYNALINSLC 376

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
           +   +++A+ +++ M  + +  +  TY+I+ID  C S +LD A  ++D ++        Y
Sbjct: 377 KGGDLDKAELLYSNMSLMNLRPNGITYSILIDSFCRSGRLDVAISYFDRMIQDGIGETVY 436

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
            Y ++I G C+ G +  A     E+ + GV P    +  +I G CK    ++A+++  +M
Sbjct: 437 AYNSLINGQCKFGDLSAAESLFIEMTNKGVEPTATTFTSLISGYCKDLQVQKAFKLYNKM 496

Query: 483 RKNGLNPDAVTWRIL 497
             NG+ P+  T+  L
Sbjct: 497 IDNGITPNVYTFTAL 511



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 40/62 (64%)

Query: 3   QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           + C    VG + KL+  M +RG  P++V+Y  LI+G C  GE+D A+++ D+M   G++P
Sbjct: 828 EYCRSGNVGASVKLWDTMLNRGLEPDLVAYNLLIYGCCVNGELDKAFELRDDMLRRGIIP 887

Query: 63  NS 64
           ++
Sbjct: 888 DN 889


>gi|13872949|dbj|BAB44054.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 909

 Score =  192 bits (487), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 129/513 (25%), Positives = 244/513 (47%), Gaps = 11/513 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D+LC   R  +A +LF +M  RG  PN V+Y  LIH  C+ G ++ A  +FD+MR  G+
Sbjct: 368 IDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGI 427

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
                 Y+ L+ G  +   ++RA  L+  +      +E L+   A+++ L+  LCR G +
Sbjct: 428 KVTVYPYNSLINGYCKQGSLDRARGLLSGM-----VKEGLTPTAASYSPLIAGLCRNGDL 482

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +    +  +M +       +    +I+  C+  +   A+R+   M    + P+ V++N +
Sbjct: 483 SSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVM 542

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G C  G   +A+QL ++ ++ G  P  +TY+ L+ GLC  S + KA + +  + +   
Sbjct: 543 IEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSYA 602

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           V         L         TE  ++   M     + D+++   ++    K    E++  
Sbjct: 603 VLNNFSLTALLYGFFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCV 662

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +  +M   +   PD + +T +I  L     + +ALN   Q M   GYSP  VT+  ++  
Sbjct: 663 LFREM-KEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQ-MVVDGYSPNTVTHTVLINN 720

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L +   +  A+ +   ML   V+ +  TY   +D       +++AK     ++   ++  
Sbjct: 721 LCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHSAML-QGHLAS 779

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              +  +IKGLC++GKI EA+  + ++ +SG +P+ + Y+ +I   CK+    +A+++  
Sbjct: 780 IVSFNILIKGLCKAGKIQEAIDLMSKITESGFSPDCISYSTIIHELCKMGDINKAFELWN 839

Query: 481 EMRKNGLNPDAVTWRILDK---LHGNRGNDFGL 510
           EM   GL PD V + I  +   +HG      G+
Sbjct: 840 EMLYKGLKPDVVAYNIFIRWCNVHGESDKALGI 872



 Score =  164 bits (416), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 123/561 (21%), Positives = 240/561 (42%), Gaps = 66/561 (11%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M  LC   RV EA ++   M + G   + V+Y TL++G+CR  E+++A ++  +M   G 
Sbjct: 263 MYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEMALRITHDMIRLGF 322

Query: 61  LPNSLTYSVLVRGVLRTRDVERA-------------------NVLMFKLW--ERMKEEE- 98
           +P+    S ++  + +   VE A                   N L+ KL   ER  + + 
Sbjct: 323 VPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFDDADR 382

Query: 99  --------DLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC 150
                    L  N   +A L+ +LC+ G + +   + + M         +    +I+  C
Sbjct: 383 LFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYC 442

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
           + G    A  ++  M K GLTP+  SY+ ++ GLC++G      +L  E  + G   + +
Sbjct: 443 KQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSCMELHREMAERGIAWNNY 502

Query: 211 TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM 270
           T+  L+ G C +  +++A ++   M+    +      N+ +   CL+ N  +   +   M
Sbjct: 503 TFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQM 562

Query: 271 LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR 330
           ++   +PD  T  ++I+G C    + +A + + D+    +   +  + T +++G    GR
Sbjct: 563 VEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADL-ENSYAVLNNFSLTALLYGFFREGR 621

Query: 331 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYA 390
             E  + L+  M  RG    +V++  ++    +    E++  +F  M   GV  D   Y 
Sbjct: 622 FTETYH-LWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVLFREMKEQGVKPDDIFYT 680

Query: 391 IVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 450
            +ID L +   + +A   WD +V      +   +  +I  LC+SG +  A     E++  
Sbjct: 681 CMIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAG 740

Query: 451 GVTPN----------------------------------IVCYNVVIDGACKLSMKREAY 476
            V PN                                  IV +N++I G CK    +EA 
Sbjct: 741 NVLPNKFTYNCFLDYFATEGDMEKAKDLHSAMLQGHLASIVSFNILIKGLCKAGKIQEAI 800

Query: 477 QILREMRKNGLNPDAVTWRIL 497
            ++ ++ ++G +PD +++  +
Sbjct: 801 DLMSKITESGFSPDCISYSTI 821



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 123/485 (25%), Positives = 220/485 (45%), Gaps = 48/485 (9%)

Query: 13  AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVR 72
           A  L   M+S G   + V Y  L++G C+   +  A +V + M + GV  + +TY  LV 
Sbjct: 240 ARGLVVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVY 299

Query: 73  GVLRTRDVERANVL---MFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAED 129
           G  R  ++E A  +   M +L     E       N +F  ++D L ++  V E F +A  
Sbjct: 300 GFCRMEELEMALRITHDMIRLGFVPSEA------NCSF--MIDELRKKELVEEAFSLACK 351

Query: 130 MPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG 189
           +     V   FA   +ID LC++ R   A R+   M  RGL P+ V+Y  ++H LCK G 
Sbjct: 352 LGDLGMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGM 411

Query: 190 CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNI 249
              A  L ++    G   + + Y  L+ G C +  L++AR                    
Sbjct: 412 IEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRAR-------------------- 451

Query: 250 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK 309
                           +L  M++    P   + + +I G C+ G +   +++  +M A +
Sbjct: 452 ---------------GLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSCMELHREM-AER 495

Query: 310 FCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEE 369
             A +  TFT +I G     ++ EA  L +  M      P  VT+N ++ G   +  + +
Sbjct: 496 GIAWNNYTFTALINGFCKDKKMDEAARL-FDKMIDSNVIPNEVTFNVMIEGYCLVGNIRK 554

Query: 370 AKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIK 429
           A ++++ M+ +G+  D+ TY  +I GLC ++ + +A  F  D+     + +N+   A++ 
Sbjct: 555 AFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLTALLY 614

Query: 430 GLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNP 489
           G  R G+  E  H   E+   GV  ++V + +++  A K   K ++  + REM++ G+ P
Sbjct: 615 GFFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVLFREMKEQGVKP 674

Query: 490 DAVTW 494
           D + +
Sbjct: 675 DDIFY 679



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 105/378 (27%), Positives = 182/378 (48%), Gaps = 6/378 (1%)

Query: 124 FRIAED----MPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           F +A D    M Q     +E+     I + C S    GA  +V  M   G+  S V YN 
Sbjct: 202 FALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNLDGARGLVVRMESEGVKASAVPYNV 261

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           +++GLCK+     A ++    +  G    E TY+ LV G C   +LE A ++   M+   
Sbjct: 262 LMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEMALRITHDMIRLG 321

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
            V     C+  +  L   +   E  ++   +      P+V   N +I+  CK  R ++A 
Sbjct: 322 FVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFDDAD 381

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           ++  +M AG+   P+ VT+  +I  L   G I++AL  L+  M  +G    +  YN+++ 
Sbjct: 382 RLFKEM-AGRGLEPNEVTYAILIHALCKRGMIEDAL-CLFDKMRDKGIKVTVYPYNSLIN 439

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
           G  +   ++ A+ + + M+  G+   + +Y+ +I GLC +  L        ++       
Sbjct: 440 GYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSCMELHREMAERGIAW 499

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           +NY + A+I G C+  K+ EA     +++DS V PN V +NV+I+G C +   R+A+Q+ 
Sbjct: 500 NNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLY 559

Query: 480 REMRKNGLNPDAVTWRIL 497
            +M + GL PD  T+R L
Sbjct: 560 DQMVEMGLKPDNYTYRSL 577



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/326 (23%), Positives = 146/326 (44%), Gaps = 31/326 (9%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC  S V +A++   D+++   V N  S T L++G+ R G     Y ++DEM   GV  +
Sbjct: 581 LCLTSGVSKANEFVADLENSYAVLNNFSLTALLYGFFREGRFTETYHLWDEMAVRGVKLD 640

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWER---------------MKEEEDL-------- 100
            ++++++V   L+  D E++ VL  ++ E+               + +EE++        
Sbjct: 641 LVSFTIIVYAALKQHDKEKSCVLFREMKEQGVKPDDIFYTCMIDALSKEENMIQALNCWD 700

Query: 101 -------SVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSG 153
                  S N      L+++LC+ GY+     + ++M  G  +  +F     +D     G
Sbjct: 701 QMVVDGYSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEG 760

Query: 154 RNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYK 213
               A  +   M + G   S+VS+N ++ GLCK G    A  L+ +  + G+ P   +Y 
Sbjct: 761 DMEKAKDLHSAMLQ-GHLASIVSFNILIKGLCKAGKIQEAIDLMSKITESGFSPDCISYS 819

Query: 214 VLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQT 273
            ++  LC   D+ KA ++   ML K         NI++R   +     + L +   M+++
Sbjct: 820 TIIHELCKMGDINKAFELWNEMLYKGLKPDVVAYNIFIRWCNVHGESDKALGIYTNMIRS 879

Query: 274 QCQPDVITLNTVINGFCKMGRIEEAL 299
             QP+  T   +++G   M    +AL
Sbjct: 880 GVQPNWDTYRALLSGISLMVSKGQAL 905



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 60/126 (47%), Gaps = 2/126 (1%)

Query: 373 VFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH-DNYVYAAMIKGL 431
           V    L  G+  +  T + ++  L +  Q   A+  +D ++  S +H D YVY A I+  
Sbjct: 173 VLGLSLSSGITVNQYTASQILFSLVKIRQFALARDLFDKML-QSGVHLDEYVYTAGIRAY 231

Query: 432 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 491
           C S  +  A   +  +   GV  + V YNV++ G CK    +EA ++   M   G+  D 
Sbjct: 232 CESRNLDGARGLVVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADE 291

Query: 492 VTWRIL 497
           VT+R L
Sbjct: 292 VTYRTL 297



 Score = 45.4 bits (106), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 38/72 (52%)

Query: 3   QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           +LC +  + +A +L+ +M  +G  P+VV+Y   I      GE D A  ++  M   GV P
Sbjct: 824 ELCKMGDINKAFELWNEMLYKGLKPDVVAYNIFIRWCNVHGESDKALGIYTNMIRSGVQP 883

Query: 63  NSLTYSVLVRGV 74
           N  TY  L+ G+
Sbjct: 884 NWDTYRALLSGI 895


>gi|6692112|gb|AAF24577.1|AC007764_19 F22C12.14 [Arabidopsis thaliana]
          Length = 661

 Score =  192 bits (487), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 135/502 (26%), Positives = 228/502 (45%), Gaps = 62/502 (12%)

Query: 12  EAHKLFFDMKSRGHV------PNVVSYTTLIHGYCRTGEMDVAY----------KVFDEM 55
           + HKL F + + G +      P+VV++ TL+HG C    +  A            +FD+M
Sbjct: 153 DCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGSLFDQM 212

Query: 56  RHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLC 115
              G+ P  +T++ L+ G+     V  A  L+ K+  +      L ++   +  +V+ +C
Sbjct: 213 VEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGK-----GLHIDVVTYGTIVNGMC 267

Query: 116 REGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLV 175
           + G       +   M +     +      +ID LC+ G +  A  +   M ++G+ P++ 
Sbjct: 268 KMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVF 327

Query: 176 SYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM 235
           +YN ++ G C  G    A +LL + I+    P   T+  L+     E  L +A K     
Sbjct: 328 TYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEK----- 382

Query: 236 LSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 295
                             LC      E+L+  +F       PD +T N++I GFCK  R 
Sbjct: 383 ------------------LC-----DEMLHRCIF-------PDTVTYNSMIYGFCKHNRF 412

Query: 296 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN 355
           ++A K + D++A    +PD VTF TII       R+ E + LL ++  +RG      TYN
Sbjct: 413 DDA-KHMFDLMA----SPDVVTFNTIIDVYCRAKRVDEGMQLLREI-SRRGLVANTTTYN 466

Query: 356 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP 415
            ++ G   +  +  A+++F  M+  GV  D+ T  I++ G CE+ +L+EA   ++ I   
Sbjct: 467 TLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMS 526

Query: 416 SNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREA 475
               D   Y  +I G+C+  K+ EA      L   GV P++  YNV+I G C  S   +A
Sbjct: 527 KIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDA 586

Query: 476 YQILREMRKNGLNPDAVTWRIL 497
             +  +M+ NG  PD  T+  L
Sbjct: 587 NVLFHKMKDNGHEPDNSTYNTL 608



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 110/465 (23%), Positives = 211/465 (45%), Gaps = 48/465 (10%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   RV EA  L   M  +G   +VV+Y T+++G C+ G+   A  +  +M    +
Sbjct: 228 INGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHI 287

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ + YS                                         ++D LC++G+ 
Sbjct: 288 KPDVVIYSA----------------------------------------IIDRLCKDGHH 307

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           ++   +  +M +       F    MID  C  GR   A R++  M +R + P ++++N++
Sbjct: 308 SDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNAL 367

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +    K G    A +L +E +     P   TY  ++ G C  +  + A+ +   M S   
Sbjct: 368 ISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMASPDV 427

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           V    I ++Y RA    K   E + +L  + +     +  T NT+I+GFC++  +  A  
Sbjct: 428 VTFNTIIDVYCRA----KRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQD 483

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +  +M++   C PD +T   +++G     +++EAL  L++V+         V YN ++ G
Sbjct: 484 LFQEMISHGVC-PDTITCNILLYGFCENEKLEEALE-LFEVIQMSKIDLDTVAYNIIIHG 541

Query: 361 LFRLRRVEEAKEVFNCMLGI-GVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
           + +  +V+EA ++F C L I GV  D  TY ++I G C  + + +A   +  +    +  
Sbjct: 542 MCKGSKVDEAWDLF-CSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEP 600

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
           DN  Y  +I+G  ++G+I +++  + E+  +G + +     +V D
Sbjct: 601 DNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFTIKMVAD 645



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 105/414 (25%), Positives = 181/414 (43%), Gaps = 28/414 (6%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           +C +     A  L   M+     P+VV Y+ +I   C+ G    A  +F EM   G+ PN
Sbjct: 266 MCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPN 325

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             TY+ ++ G         A  L+  + ER     +++ +   F  L+ +  +EG + E 
Sbjct: 326 VFTYNCMIDGFCSFGRWSDAQRLLRDMIER-----EINPDVLTFNALISASVKEGKLFEA 380

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            ++ ++M       +      MI   C+  R   A  +  +M     +P +V++N+I+  
Sbjct: 381 EKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMA----SPDVVTFNTIIDV 436

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            C+        QLL E  + G + +  TY  L+ G C   +L  A+ + Q M+S      
Sbjct: 437 YCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPD 496

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
           T  CNI L   C  +   E L +   +  ++   D +  N +I+G CK  +++EA  +  
Sbjct: 497 TITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDL-- 554

Query: 304 DMVAGKFCA-------PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
                 FC+       PD  T+  +I G      I +A N+L+  M   G+ P   TYN 
Sbjct: 555 ------FCSLPIHGVEPDVQTYNVMISGFCGKSAISDA-NVLFHKMKDNGHEPDNSTYNT 607

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD 410
           ++RG  +   ++++ E+ + M   G   D+ T  +V D L    +LD  K F D
Sbjct: 608 LIRGCLKAGEIDKSIELISEMRSNGFSGDAFTIKMVAD-LITDGRLD--KSFSD 658



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 108/228 (47%), Gaps = 6/228 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C   RV E  +L  ++  RG V N  +Y TLIHG+C    ++ A  +F EM   GV
Sbjct: 434 IDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGV 493

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+++T ++L+ G      +E A     +L+E ++  + + ++  A+  ++  +C+   V
Sbjct: 494 CPDTITCNILLYGFCENEKLEEA----LELFEVIQMSK-IDLDTVAYNIIIHGMCKGSKV 548

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E + +   +P      +      MI   C       A+ + + M+  G  P   +YN++
Sbjct: 549 DEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTL 608

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKA 228
           + G  K G   ++ +L+ E    G+     T K +V  L  +  L+K+
Sbjct: 609 IRGCLKAGEIDKSIELISEMRSNGFSGDAFTIK-MVADLITDGRLDKS 655


>gi|302755068|ref|XP_002960958.1| hypothetical protein SELMODRAFT_70262 [Selaginella moellendorffii]
 gi|300171897|gb|EFJ38497.1| hypothetical protein SELMODRAFT_70262 [Selaginella moellendorffii]
          Length = 479

 Score =  192 bits (487), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 127/456 (27%), Positives = 210/456 (46%), Gaps = 19/456 (4%)

Query: 27  PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVL 86
           PN +SY  L+   CRTG++D A     EM    ++P+  TY+V++  + + R + RA   
Sbjct: 33  PNALSYCYLVKALCRTGKIDKACSTIAEMAREKLVPDVFTYNVVIDTLCKARRISRA--- 89

Query: 87  MFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMI 146
             + +E M E + ++ N      L+  LC+ G V +   +   M        +     +I
Sbjct: 90  -IEFFETMPEPDVVTYNT-----LLGGLCKNGRVAQACSLFGSMEGAGITPSDVTYTTLI 143

Query: 147 DSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL 206
           D  C+  +   A  ++ +M  R  +P++ SY SI++GLCK+    +AYQL EE    G  
Sbjct: 144 DVFCKMCQFETAYGLLQLMASRKCSPTVYSYCSIINGLCKNRKVDQAYQLFEEMKLAGCK 203

Query: 207 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 266
           P   TY  L+ GLC +  L +A+ +L  M+              +  LC      E   +
Sbjct: 204 PDRVTYNTLIHGLCVKQRLHEAKDLLTVMVENGFQPDKITFTALIEGLCTTDRIKEAFVL 263

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
              M +  C PD++T   +++  C + ++  AL V+ +  A     P+AV   T IF  L
Sbjct: 264 FQGMAKQGCAPDLVTHTVLVSKLCILRKLRPALSVVRNYPA----CPEAVILYTPIFREL 319

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
              R  +    L Q M +RG  P +VTY A  +GL   +    A   F  ML  G+  D 
Sbjct: 320 GRRRGFDRAARLLQKMARRGVPPNVVTYTAFFKGLGDWKEGMRAYREFRRMLEQGIEPDM 379

Query: 387 TTYAIVIDGLCESNQLDEAK---RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
             Y +++DG C++++LD A+   R+ D    P NI     Y  ++   CR GK+      
Sbjct: 380 VAYNVLVDGFCKADRLDMAEKMVRYMDQSGLPPNI---VTYNTLVGHHCRKGKVEAIGEL 436

Query: 444 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           L+ +V  G  P++  ++ ++ G   +     AY  L
Sbjct: 437 LHTMVSRGRQPDVATWSTLVAGLFMVGQADAAYSFL 472



 Score =  171 bits (433), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 125/432 (28%), Positives = 202/432 (46%), Gaps = 15/432 (3%)

Query: 76  RTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKS 135
           R R  E+  V+  +++      +D   N  ++  LV +LCR G +++      +M + K 
Sbjct: 12  RARRSEQIVVVFRRIFS-----QDCKPNALSYCYLVKALCRTGKIDKACSTIAEMAREKL 66

Query: 136 VNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQ 195
           V + F    +ID+LC++ R   A      M +    P +V+YN+++ GLCK+G   +A  
Sbjct: 67  VPDVFTYNVVIDTLCKARRISRAIEFFETMPE----PDVVTYNTLLGGLCKNGRVAQACS 122

Query: 196 LLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT-RICNIYLRAL 254
           L       G  PS+ TY  L++  C     E A  +LQ M S+K        C+I +  L
Sbjct: 123 LFGSMEGAGITPSDVTYTTLIDVFCKMCQFETAYGLLQLMASRKCSPTVYSYCSI-INGL 181

Query: 255 CLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPD 314
           C  +   +   +   M    C+PD +T NT+I+G C   R+ EA  +L  MV   F  PD
Sbjct: 182 CKNRKVDQAYQLFEEMKLAGCKPDRVTYNTLIHGLCVKQRLHEAKDLLTVMVENGF-QPD 240

Query: 315 AVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVF 374
            +TFT +I GL    RI+EA  +L+Q M ++G +P +VT+  ++  L  LR++  A  V 
Sbjct: 241 KITFTALIEGLCTTDRIKEAF-VLFQGMAKQGCAPDLVTHTVLVSKLCILRKLRPALSVV 299

Query: 375 NCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRS 434
                         Y  +   L      D A R    +       +   Y A  KGL   
Sbjct: 300 RNYPACPEAV--ILYTPIFRELGRRRGFDRAARLLQKMARRGVPPNVVTYTAFFKGLGDW 357

Query: 435 GKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
            +   A      +++ G+ P++V YNV++DG CK      A +++R M ++GL P+ VT+
Sbjct: 358 KEGMRAYREFRRMLEQGIEPDMVAYNVLVDGFCKADRLDMAEKMVRYMDQSGLPPNIVTY 417

Query: 495 RILDKLHGNRGN 506
             L   H  +G 
Sbjct: 418 NTLVGHHCRKGK 429



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 136/279 (48%), Gaps = 12/279 (4%)

Query: 225 LEKARKVLQFM-----LSKKDVDRTRICNIYL-RALCLIKNPTELLNVLVFMLQTQCQPD 278
           LE+AR+  Q +     +  +D     +   YL +ALC      +  + +  M + +  PD
Sbjct: 10  LERARRSEQIVVVFRRIFSQDCKPNALSYCYLVKALCRTGKIDKACSTIAEMAREKLVPD 69

Query: 279 VITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLL 338
           V T N VI+  CK  RI  A++    M       PD VT+ T++ GL   GR+ +A +L 
Sbjct: 70  VFTYNVVIDTLCKARRISRAIEFFETMPE-----PDVVTYNTLLGGLCKNGRVAQACSL- 123

Query: 339 YQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE 398
           +  M   G +P  VTY  ++    ++ + E A  +   M          +Y  +I+GLC+
Sbjct: 124 FGSMEGAGITPSDVTYTTLIDVFCKMCQFETAYGLLQLMASRKCSPTVYSYCSIINGLCK 183

Query: 399 SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVC 458
           + ++D+A + ++++       D   Y  +I GLC   ++HEA   L  +V++G  P+ + 
Sbjct: 184 NRKVDQAYQLFEEMKLAGCKPDRVTYNTLIHGLCVKQRLHEAKDLLTVMVENGFQPDKIT 243

Query: 459 YNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           +  +I+G C     +EA+ + + M K G  PD VT  +L
Sbjct: 244 FTALIEGLCTTDRIKEAFVLFQGMAKQGCAPDLVTHTVL 282



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 91/378 (24%), Positives = 165/378 (43%), Gaps = 76/378 (20%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C + +   A+ L   M SR   P V SY ++I+G C+  ++D AY++F+EM+  G 
Sbjct: 143 IDVFCKMCQFETAYGLLQLMASRKCSPTVYSYCSIINGLCKNRKVDQAYQLFEEMKLAGC 202

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TY+ L+ G+   + +  A  L+  + E   + + ++     F  L++ LC    +
Sbjct: 203 KPDRVTYNTLIHGLCVKQRLHEAKDLLTVMVENGFQPDKIT-----FTALIEGLCTTDRI 257

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLC------------------------------ 150
            E F + + M +     +      ++  LC                              
Sbjct: 258 KEAFVLFQGMAKQGCAPDLVTHTVLVSKLCILRKLRPALSVVRNYPACPEAVILYTPIFR 317

Query: 151 RSGRNHG---ASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLP 207
             GR  G   A+R++  M +RG+ P++V+Y +   GL      MRAY+     ++ G  P
Sbjct: 318 ELGRRRGFDRAARLLQKMARRGVPPNVVTYTAFFKGLGDWKEGMRAYREFRRMLEQGIEP 377

Query: 208 SEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVL 267
               Y VLV+G C    L+ A K+++                                  
Sbjct: 378 DMVAYNVLVDGFCKADRLDMAEKMVR---------------------------------- 403

Query: 268 VFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA-GKFCAPDAVTFTTIIFGLL 326
            +M Q+   P+++T NT++   C+ G++E   ++L+ MV+ G+   PD  T++T++ GL 
Sbjct: 404 -YMDQSGLPPNIVTYNTLVGHHCRKGKVEAIGELLHTMVSRGR--QPDVATWSTLVAGLF 460

Query: 327 NVGRIQEALNLLYQVMPQ 344
            VG+   A + L   M Q
Sbjct: 461 MVGQADAAYSFLNLAMSQ 478


>gi|413915825|gb|AFW21589.1| hypothetical protein ZEAMMB73_481763 [Zea mays]
 gi|413923991|gb|AFW63923.1| hypothetical protein ZEAMMB73_685382 [Zea mays]
          Length = 953

 Score =  192 bits (487), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 135/502 (26%), Positives = 231/502 (46%), Gaps = 7/502 (1%)

Query: 10  VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSV 69
           + +A      MK  G  PNVV+Y TLI G+ +    + A  V+ +M H GV  N+     
Sbjct: 450 IAKAAGYMRKMKDSGIAPNVVTYGTLIDGFFKCQGQEAALDVYRDMLHEGVEANNFIVDS 509

Query: 70  LVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAED 129
           LV G+ +  ++E A  L   + ER      L +++  +A L+D L + G +    ++ ++
Sbjct: 510 LVNGLRKNGNIEEAEALFKDMGER-----GLLLDHVNYATLMDGLFKTGNMPAALKVGQE 564

Query: 130 MPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG 189
           + +     +       I+ LCR G+   A   +  MR  GL P   +YN+++   C+ G 
Sbjct: 565 LMERNLSPDAVVYNVFINCLCRLGKFSEAKSFLKEMRNTGLEPDQATYNTMISAQCREGN 624

Query: 190 CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNI 249
             +A +LL E       P+  TY  LV GL     +EKA+ +L  M S            
Sbjct: 625 TSKALKLLNEMKWSSIKPNLITYTTLVVGLLEAGVVEKAKYLLNEMASAGFTPTPLTYRR 684

Query: 250 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK 309
            L+A    ++P  +L V   M+      D+   NT+++  C  G   +A  VL++M+ G+
Sbjct: 685 VLQACSGSRSPYVILEVHELMMGAGLHADITVYNTLVHVLCCHGMTRKATIVLDEML-GR 743

Query: 310 FCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEE 369
             APD +TF  +I G      +  A     Q++ Q G SP I T+N +L GL    R+ E
Sbjct: 744 GIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQ-GLSPNIATFNTLLGGLESAGRIGE 802

Query: 370 AKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIK 429
           A  V   M  +G+  ++ TY I++ G  + +   EA R + ++V    I     Y ++I 
Sbjct: 803 ADTVICEMKKMGLEPNNLTYDILVTGYAKKSNKVEALRLYCEMVSKGFIPKASTYNSLIS 862

Query: 430 GLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNP 489
              ++G +++A     E+   GV      Y+++++G  KL    E   +L++M++ G  P
Sbjct: 863 DFAKAGMMNQAKELFSEMKRRGVLHTSSTYDILLNGWSKLRNGTEVRILLKDMKELGFKP 922

Query: 490 DAVTWRILDKLHGNRGNDFGLR 511
              T   + +     G  +  R
Sbjct: 923 SKGTISSMSRAFSKPGMTWEAR 944



 Score =  191 bits (486), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 137/506 (27%), Positives = 242/506 (47%), Gaps = 7/506 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D L  + RV E+  L  +M SRG   ++V YTT++    + G+++ A  V        +
Sbjct: 336 IDSLAKVQRVNESLGLLGEMVSRGVAMDLVMYTTVMDRLGKEGKIEEAKDVLRHALSDNI 395

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +TY+VLV    R  +++ A  ++ ++     EE+ +S N   F+++++ L + G +
Sbjct: 396 TPNCVTYTVLVDAHCRAGNIDGAEQMLLQM-----EEKSVSPNVVTFSSILNGLVKRGCI 450

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +       M            G +ID   +      A  V   M   G+  +    +S+
Sbjct: 451 AKAAGYMRKMKDSGIAPNVVTYGTLIDGFFKCQGQEAALDVYRDMLHEGVEANNFIVDSL 510

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           V+GL K+G    A  L ++  + G L     Y  L++GL    ++  A KV Q ++ +  
Sbjct: 511 VNGLRKNGNIEEAEALFKDMGERGLLLDHVNYATLMDGLFKTGNMPAALKVGQELMERNL 570

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                + N+++  LC +   +E  + L  M  T  +PD  T NT+I+  C+ G   +ALK
Sbjct: 571 SPDAVVYNVFINCLCRLGKFSEAKSFLKEMRNTGLEPDQATYNTMISAQCREGNTSKALK 630

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +LN+M       P+ +T+TT++ GLL  G +++A  LL + M   G++P  +TY  VL+ 
Sbjct: 631 LLNEMKWSSI-KPNLITYTTLVVGLLEAGVVEKAKYLLNE-MASAGFTPTPLTYRRVLQA 688

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
               R      EV   M+G G+ AD T Y  ++  LC      +A    D+++      D
Sbjct: 689 CSGSRSPYVILEVHELMMGAGLHADITVYNTLVHVLCCHGMTRKATIVLDEMLGRGIAPD 748

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              + A+I G C+S  +  A     +++  G++PNI  +N ++ G        EA  ++ 
Sbjct: 749 TITFNALILGHCKSSHLDNAFATYAQMLHQGLSPNIATFNTLLGGLESAGRIGEADTVIC 808

Query: 481 EMRKNGLNPDAVTWRILDKLHGNRGN 506
           EM+K GL P+ +T+ IL   +  + N
Sbjct: 809 EMKKMGLEPNNLTYDILVTGYAKKSN 834



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 138/500 (27%), Positives = 236/500 (47%), Gaps = 14/500 (2%)

Query: 4   LCGLSR---VGEAHKLFFDMKSRGHVPN---VVSYTTLIHGYCRTGEMDVAYKVFDEMRH 57
           L GLSR   VGEA  L  +M  RG   +   VV +  LI GYC+  +M  A  V + M  
Sbjct: 159 LVGLSRTGLVGEAAALA-EMLVRGRGIDGLGVVGWNALIDGYCKVQDMAAALAVVERMTT 217

Query: 58  CGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCRE 117
            G+  + + Y+ LV G   + D + A    +++ ERMK +  +  +      L+   C+ 
Sbjct: 218 QGLSLDVVGYNTLVAGFFYSGDADAA----WEVAERMKAD-GVEPSVVTHTTLIGEYCKM 272

Query: 118 GYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
             + E F + E M +   + +      ++D LCR GR   A  +   M K G+ P+ V+Y
Sbjct: 273 KRIEEAFTLYEGMVRSGVLPDVVTLSALVDGLCRDGRFSEAYALFREMDKIGVAPNHVTY 332

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
            + +  L K      +  LL E +  G       Y  +++ L  E  +E+A+ VL+  LS
Sbjct: 333 CTFIDSLAKVQRVNESLGLLGEMVSRGVAMDLVMYTTVMDRLGKEGKIEEAKDVLRHALS 392

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
                      + + A C   N      +L+ M +    P+V+T ++++NG  K G I +
Sbjct: 393 DNITPNCVTYTVLVDAHCRAGNIDGAEQMLLQMEEKSVSPNVVTFSSILNGLVKRGCIAK 452

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           A   +  M      AP+ VT+ T+I G       + AL++ Y+ M   G        +++
Sbjct: 453 AAGYMRKMKDSGI-APNVVTYGTLIDGFFKCQGQEAALDV-YRDMLHEGVEANNFIVDSL 510

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 417
           + GL +   +EEA+ +F  M   G++ D   YA ++DGL ++  +  A +   +++  + 
Sbjct: 511 VNGLRKNGNIEEAEALFKDMGERGLLLDHVNYATLMDGLFKTGNMPAALKVGQELMERNL 570

Query: 418 IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQ 477
             D  VY   I  LCR GK  EA  FL E+ ++G+ P+   YN +I   C+     +A +
Sbjct: 571 SPDAVVYNVFINCLCRLGKFSEAKSFLKEMRNTGLEPDQATYNTMISAQCREGNTSKALK 630

Query: 478 ILREMRKNGLNPDAVTWRIL 497
           +L EM+ + + P+ +T+  L
Sbjct: 631 LLNEMKWSSIKPNLITYTTL 650



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 140/510 (27%), Positives = 242/510 (47%), Gaps = 18/510 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C +  +  A  +   M ++G   +VV Y TL+ G+  +G+ D A++V + M+  GV
Sbjct: 196 IDGYCKVQDMAAALAVVERMTTQGLSLDVVGYNTLVAGFFYSGDADAAWEVAERMKADGV 255

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +T++ L+    + + +E A    F L+E M     L  +    + LVD LCR+G  
Sbjct: 256 EPSVVTHTTLIGEYCKMKRIEEA----FTLYEGMVRSGVLP-DVVTLSALVDGLCRDGRF 310

Query: 121 NEVFRIAEDMPQ-GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           +E + +  +M + G + N    C   IDSL +  R + +  ++  M  RG+   LV Y +
Sbjct: 311 SEAYALFREMDKIGVAPNHVTYC-TFIDSLAKVQRVNESLGLLGEMVSRGVAMDLVMYTT 369

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM---- 235
           ++  L K G    A  +L   +     P+  TY VLV+  C   +++ A ++L  M    
Sbjct: 370 VMDRLGKEGKIEEAKDVLRHALSDNITPNCVTYTVLVDAHCRAGNIDGAEQMLLQMEEKS 429

Query: 236 LSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 295
           +S   V  + I N  ++  C+ K    +      M  +   P+V+T  T+I+GF K    
Sbjct: 430 VSPNVVTFSSILNGLVKRGCIAKAAGYMRK----MKDSGIAPNVVTYGTLIDGFFKCQGQ 485

Query: 296 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN 355
           E AL V  DM+     A + +   +++ GL   G I+EA   L++ M +RG     V Y 
Sbjct: 486 EAALDVYRDMLHEGVEANNFIV-DSLVNGLRKNGNIEEA-EALFKDMGERGLLLDHVNYA 543

Query: 356 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP 415
            ++ GLF+   +  A +V   ++   +  D+  Y + I+ LC   +  EAK F  ++   
Sbjct: 544 TLMDGLFKTGNMPAALKVGQELMERNLSPDAVVYNVFINCLCRLGKFSEAKSFLKEMRNT 603

Query: 416 SNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREA 475
               D   Y  MI   CR G   +A+  L E+  S + PN++ Y  ++ G  +  +  +A
Sbjct: 604 GLEPDQATYNTMISAQCREGNTSKALKLLNEMKWSSIKPNLITYTTLVVGLLEAGVVEKA 663

Query: 476 YQILREMRKNGLNPDAVTW-RILDKLHGNR 504
             +L EM   G  P  +T+ R+L    G+R
Sbjct: 664 KYLLNEMASAGFTPTPLTYRRVLQACSGSR 693



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 100/434 (23%), Positives = 175/434 (40%), Gaps = 42/434 (9%)

Query: 10  VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSV 69
           + EA  LF DM  RG + + V+Y TL+ G  +TG M  A KV  E+    + P+++ Y+V
Sbjct: 520 IEEAEALFKDMGERGLLLDHVNYATLMDGLFKTGNMPAALKVGQELMERNLSPDAVVYNV 579

Query: 70  LVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAED 129
            +  + R      A   + ++         L  + A +  ++ + CREG  ++  ++  +
Sbjct: 580 FINCLCRLGKFSEAKSFLKEM-----RNTGLEPDQATYNTMISAQCREGNTSKALKLLNE 634

Query: 130 MPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY------------ 177
           M              ++  L  +G    A  ++  M   G TP+ ++Y            
Sbjct: 635 MKWSSIKPNLITYTTLVVGLLEAGVVEKAKYLLNEMASAGFTPTPLTYRRVLQACSGSRS 694

Query: 178 -----------------------NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKV 214
                                  N++VH LC HG   +A  +L+E +  G  P   T+  
Sbjct: 695 PYVILEVHELMMGAGLHADITVYNTLVHVLCCHGMTRKATIVLDEMLGRGIAPDTITFNA 754

Query: 215 LVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQ 274
           L+ G C  S L+ A      ML +         N  L  L       E   V+  M +  
Sbjct: 755 LILGHCKSSHLDNAFATYAQMLHQGLSPNIATFNTLLGGLESAGRIGEADTVICEMKKMG 814

Query: 275 CQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEA 334
            +P+ +T + ++ G+ K     EAL++  +MV+  F  P A T+ ++I      G + +A
Sbjct: 815 LEPNNLTYDILVTGYAKKSNKVEALRLYCEMVSKGFI-PKASTYNSLISDFAKAGMMNQA 873

Query: 335 LNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVID 394
             L  + M +RG      TY+ +L G  +LR   E + +   M  +G      T + +  
Sbjct: 874 KELFSE-MKRRGVLHTSSTYDILLNGWSKLRNGTEVRILLKDMKELGFKPSKGTISSMSR 932

Query: 395 GLCESNQLDEAKRF 408
              +     EA+R 
Sbjct: 933 AFSKPGMTWEARRL 946



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 142/336 (42%), Gaps = 40/336 (11%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C      +A KL  +MK     PN+++YTTL+ G    G ++ A  + +EM   G  P  
Sbjct: 620 CREGNTSKALKLLNEMKWSSIKPNLITYTTLVVGLLEAGVVEKAKYLLNEMASAGFTPTP 679

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKE---EEDLSVNNA---------------- 105
           LTY    R VL+     R+  ++ ++ E M       D++V N                 
Sbjct: 680 LTY----RRVLQACSGSRSPYVILEVHELMMGAGLHADITVYNTLVHVLCCHGMTRKATI 735

Query: 106 ---------------AFANLVDSLCREGYVNEVFRI-AEDMPQGKSVNEEFACGHMIDSL 149
                           F  L+   C+  +++  F   A+ + QG S N       ++  L
Sbjct: 736 VLDEMLGRGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQGLSPNIA-TFNTLLGGL 794

Query: 150 CRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSE 209
             +GR   A  V+  M+K GL P+ ++Y+ +V G  K    + A +L  E +  G++P  
Sbjct: 795 ESAGRIGEADTVICEMKKMGLEPNNLTYDILVTGYAKKSNKVEALRLYCEMVSKGFIPKA 854

Query: 210 HTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVF 269
            TY  L+        + +A+++   M  +  +  +   +I L     ++N TE+  +L  
Sbjct: 855 STYNSLISDFAKAGMMNQAKELFSEMKRRGVLHTSSTYDILLNGWSKLRNGTEVRILLKD 914

Query: 270 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM 305
           M +   +P   T++++   F K G   EA ++L  +
Sbjct: 915 MKELGFKPSKGTISSMSRAFSKPGMTWEARRLLKTL 950



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 112/258 (43%), Gaps = 45/258 (17%)

Query: 278 DVITLNTVINGFCKMGRIEEALKVLN-----------DMVA-------------GKFCAP 313
           D +TLN++I  +C +  +  AL +L            D V+             G+   P
Sbjct: 79  DPLTLNSIILSYCSLHALRPALSLLRSSSGPQPQVAADTVSYNIFLAGLSEQGHGRLAPP 138

Query: 314 ------------DAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSP-GIVTYNAVLRG 360
                       D VT +T + GL   G + EA  L   ++  RG    G+V +NA++ G
Sbjct: 139 VLSEMCKRGVPWDGVTMSTALVGLSRTGLVGEAAALAEMLVRGRGIDGLGVVGWNALIDG 198

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE----AKRFWDDIVWPS 416
             +++ +  A  V   M   G+  D   Y  ++ G   S   D     A+R   D V PS
Sbjct: 199 YCKVQDMAAALAVVERMTTQGLSLDVVGYNTLVAGFFYSGDADAAWEVAERMKADGVEPS 258

Query: 417 NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAY 476
            +     +  +I   C+  +I EA      +V SGV P++V  + ++DG C+     EAY
Sbjct: 259 VV----THTTLIGEYCKMKRIEEAFTLYEGMVRSGVLPDVVTLSALVDGLCRDGRFSEAY 314

Query: 477 QILREMRKNGLNPDAVTW 494
            + REM K G+ P+ VT+
Sbjct: 315 ALFREMDKIGVAPNHVTY 332


>gi|224139020|ref|XP_002322960.1| predicted protein [Populus trichocarpa]
 gi|222867590|gb|EEF04721.1| predicted protein [Populus trichocarpa]
          Length = 694

 Score =  191 bits (486), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 126/488 (25%), Positives = 239/488 (48%), Gaps = 13/488 (2%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           EA  L   M S+   P+V SY T+I+G  ++G++  A +VFDEM   G++P+ + Y++++
Sbjct: 167 EAKGLLDWMWSKDLKPDVYSYGTVINGMVKSGDLVSALEVFDEMFERGLVPDVMCYNIMI 226

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP 131
            G  +  D  +      ++WER+ +   +  N   +  +++ LC+ G  +E   + E M 
Sbjct: 227 DGFFKRGDYVQGK----EIWERLVKGSCVYPNVVTYNVMINGLCKMGRFDESLEMWERMK 282

Query: 132 QGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCM 191
           + +   + F    +I  LC  G   GA  V   M KR +   +V+YN++++G C+ G   
Sbjct: 283 KNECEMDLFTYSSLICGLCDVGNVDGAVEVYKEMVKRSVVVDVVTYNALLNGFCRAGKIK 342

Query: 192 RAYQLLEEGIQFGYLPSEH--TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNI 249
            +++L    +  G     +  +Y + + GL     +E+A  V + +  +     +    +
Sbjct: 343 ESFELW---VMMGKENCHNVVSYNIFIRGLFENRKVEEAISVWELLRRRGSGADSTTYGV 399

Query: 250 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK 309
            +  LC   +  + L +L        + D    +++++G  K GR++EAL +++ M   K
Sbjct: 400 LIHGLCKNGHLNKALKILKEAKDGGDKLDAFAYSSIVDGLSKQGRVDEALGIVHQM--DK 457

Query: 310 F-CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE 368
           + C         +I G +   +++EA+   ++ M  +G SP +V+YN ++ GL +  R  
Sbjct: 458 YGCELSPHVCNPLINGFVRASKLEEAI-CFFREMETKGCSPTVVSYNTLINGLCKAERFS 516

Query: 369 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI 428
           +A      ML      D  TY++++DGLC+  ++D A   W  ++      D  ++  ++
Sbjct: 517 DAYSFVKEMLEKDWKPDMITYSLLMDGLCQGKKIDMALNLWRQVLVKGLEPDVTMHNILM 576

Query: 429 KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLN 488
            GLC +GKI +A+     +  S   PN+V +N ++DG  K      A  I   M KNG  
Sbjct: 577 HGLCSAGKIEDALLLYSNMKQSNCLPNLVTHNTLMDGLYKARECEMASVIWACMFKNGFQ 636

Query: 489 PDAVTWRI 496
           PD +++ I
Sbjct: 637 PDIISYNI 644



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 108/405 (26%), Positives = 198/405 (48%), Gaps = 15/405 (3%)

Query: 4   LCGLSRVGE---AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEM--RHC 58
           +CGL  VG    A +++ +M  R  V +VV+Y  L++G+CR G++  +++++  M   +C
Sbjct: 297 ICGLCDVGNVDGAVEVYKEMVKRSVVVDVVTYNALLNGFCRAGKIKESFELWVMMGKENC 356

Query: 59  GVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREG 118
               N ++Y++ +RG+   R VE A      +WE ++       ++  +  L+  LC+ G
Sbjct: 357 H---NVVSYNIFIRGLFENRKVEEA----ISVWELLRRRGS-GADSTTYGVLIHGLCKNG 408

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
           ++N+  +I ++   G    + FA   ++D L + GR   A  +V+ M K G   S    N
Sbjct: 409 HLNKALKILKEAKDGGDKLDAFAYSSIVDGLSKQGRVDEALGIVHQMDKYGCELSPHVCN 468

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
            +++G  +      A     E    G  P+  +Y  L+ GLC       A   ++ ML K
Sbjct: 469 PLINGFVRASKLEEAICFFREMETKGCSPTVVSYNTLINGLCKAERFSDAYSFVKEMLEK 528

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
                    ++ +  LC  K     LN+   +L    +PDV   N +++G C  G+IE+A
Sbjct: 529 DWKPDMITYSLLMDGLCQGKKIDMALNLWRQVLVKGLEPDVTMHNILMHGLCSAGKIEDA 588

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
           L + ++M     C P+ VT  T++ GL    R  E  ++++  M + G+ P I++YN  L
Sbjct: 589 LLLYSNMKQSN-CLPNLVTHNTLMDGLYK-ARECEMASVIWACMFKNGFQPDIISYNITL 646

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLD 403
           +GL    R+ +   +F+  L  G++  S T+ I++  + +   LD
Sbjct: 647 KGLCSCGRISDGIALFDDALKNGILPTSITWYILVRAVLKLGPLD 691



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 110/437 (25%), Positives = 210/437 (48%), Gaps = 8/437 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC + R  E+ +++  MK      ++ +Y++LI G C  G +D A +V+ EM    V
Sbjct: 262 INGLCKMGRFDESLEMWERMKKNECEMDLFTYSSLICGLCDVGNVDGAVEVYKEMVKRSV 321

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           + + +TY+ L+ G  R   ++ +    F+LW  M +E     N  ++   +  L     V
Sbjct: 322 VVDVVTYNALLNGFCRAGKIKES----FELWVMMGKEN--CHNVVSYNIFIRGLFENRKV 375

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E   + E + +  S  +    G +I  LC++G  + A +++   +  G      +Y+SI
Sbjct: 376 EEAISVWELLRRRGSGADSTTYGVLIHGLCKNGHLNKALKILKEAKDGGDKLDAFAYSSI 435

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           V GL K G    A  ++ +  ++G   S H    L+ G    S LE+A    + M +K  
Sbjct: 436 VDGLSKQGRVDEALGIVHQMDKYGCELSPHVCNPLINGFVRASKLEEAICFFREMETKGC 495

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                  N  +  LC  +  ++  + +  ML+   +PD+IT + +++G C+  +I+ AL 
Sbjct: 496 SPTVVSYNTLINGLCKAERFSDAYSFVKEMLEKDWKPDMITYSLLMDGLCQGKKIDMALN 555

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +   ++  K   PD      ++ GL + G+I++AL LLY  M Q    P +VT+N ++ G
Sbjct: 556 LWRQVLV-KGLEPDVTMHNILMHGLCSAGKIEDAL-LLYSNMKQSNCLPNLVTHNTLMDG 613

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L++ R  E A  ++ CM   G   D  +Y I + GLC   ++ +    +DD +    +  
Sbjct: 614 LYKARECEMASVIWACMFKNGFQPDIISYNITLKGLCSCGRISDGIALFDDALKNGILPT 673

Query: 421 NYVYAAMIKGLCRSGKI 437
           +  +  +++ + + G +
Sbjct: 674 SITWYILVRAVLKLGPL 690



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/309 (27%), Positives = 148/309 (47%), Gaps = 6/309 (1%)

Query: 194 YQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRA 253
           +Q +EE   FG  P   +Y  L+      + LEKA   L +  +   +   +  NI ++ 
Sbjct: 101 FQKMEE--IFGCKPGIRSYNALLNAFIEANLLEKAESFLAYFETVGILPNLQTYNILIKI 158

Query: 254 LCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAP 313
               +   E   +L +M     +PDV +  TVING  K G +  AL+V ++M   +   P
Sbjct: 159 SVKKRQFVEAKGLLDWMWSKDLKPDVYSYGTVINGMVKSGDLVSALEVFDEMFE-RGLVP 217

Query: 314 DAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEV 373
           D + +  +I G    G   +   +  +++      P +VTYN ++ GL ++ R +E+ E+
Sbjct: 218 DVMCYNIMIDGFFKRGDYVQGKEIWERLVKGSCVYPNVVTYNVMINGLCKMGRFDESLEM 277

Query: 374 FNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR 433
           +  M       D  TY+ +I GLC+   +D A   + ++V  S + D   Y A++ G CR
Sbjct: 278 WERMKKNECEMDLFTYSSLICGLCDVGNVDGAVEVYKEMVKRSVVVDVVTYNALLNGFCR 337

Query: 434 SGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVT 493
           +GKI E+   L+ ++      N+V YN+ I G  +     EA  +   +R+ G   D+ T
Sbjct: 338 AGKIKESFE-LWVMMGKENCHNVVSYNIFIRGLFENRKVEEAISVWELLRRRGSGADSTT 396

Query: 494 WRILDKLHG 502
           + +L  +HG
Sbjct: 397 YGVL--IHG 403



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 134/298 (44%), Gaps = 11/298 (3%)

Query: 206 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 265
           LP   + + L + L  E   + A  +  F  + +    T   +I+L  L  + +P  +++
Sbjct: 4   LPKPLSARQLFKLLKAEKSPKSALAL--FDSASRQPGYTHSPHIFLLILRRLSDPKLVVH 61

Query: 266 V--LVFMLQTQ---CQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTT 320
           V  +V +++TQ   C  DV+   TV+  + K     EAL     M     C P   ++  
Sbjct: 62  VTRIVELIKTQKCKCTEDVVL--TVLKAYAKSKMPNEALDCFQKMEEIFGCKPGIRSYNA 119

Query: 321 IIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI 380
           ++   +    +++A + L       G  P + TYN +++   + R+  EAK + + M   
Sbjct: 120 LLNAFIEANLLEKAESFL-AYFETVGILPNLQTYNILIKISVKKRQFVEAKGLLDWMWSK 178

Query: 381 GVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEA 440
            +  D  +Y  VI+G+ +S  L  A   +D++     + D   Y  MI G  + G   + 
Sbjct: 179 DLKPDVYSYGTVINGMVKSGDLVSALEVFDEMFERGLVPDVMCYNIMIDGFFKRGDYVQG 238

Query: 441 VHFLYELVD-SGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
                 LV  S V PN+V YNV+I+G CK+    E+ ++   M+KN    D  T+  L
Sbjct: 239 KEIWERLVKGSCVYPNVVTYNVMINGLCKMGRFDESLEMWERMKKNECEMDLFTYSSL 296


>gi|125582652|gb|EAZ23583.1| hypothetical protein OsJ_07284 [Oryza sativa Japonica Group]
          Length = 667

 Score =  191 bits (486), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 128/514 (24%), Positives = 236/514 (45%), Gaps = 24/514 (4%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C   +  EA ++  +M  +G  P VV+ T +I+ YC+ G M  A +V + M+  G 
Sbjct: 118 VDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGC 177

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN  TY+ LV+G      V +A  L+ K+         ++ +   +  L+   C +G++
Sbjct: 178 KPNVWTYNALVQGFCNEGKVHKAMTLLNKM-----RACGVNPDAVTYNLLIRGQCIDGHI 232

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
              FR+   M     + +++    +I++LC+ GR   A  +   +  RG+ P+ V++NS+
Sbjct: 233 ESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSL 292

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++GLCK G    A++ LE+ +  G  P  +TY   +E LC     ++    +  ML K  
Sbjct: 293 INGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDV 352

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
              T    I +  L   +N   +      M+ + C PDV+T  T +  +C  GR+ EA  
Sbjct: 353 KPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAEN 412

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           VL +M        D + + T++ G  ++G+   A+++L Q M      P   TY  +LR 
Sbjct: 413 VLMEMSKNGVTV-DTMAYNTLMDGHASIGQTDHAVSILKQ-MTSVASVPNQFTYFILLRH 470

Query: 361 LFRLRRVEEAKE-----------------VFNCMLGIGVVADSTTYAIVIDGLCESNQLD 403
           L R+R VE+                    +F+ M     + +S TY+ +++G  E  + +
Sbjct: 471 LVRMRLVEDVLPLTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTE 530

Query: 404 EAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463
           EA      +   S   +  +Y A++   C+S +  +A   +  ++  G  P ++ Y  ++
Sbjct: 531 EATSLVSLMKEDSISLNEDIYTALVTCFCKSKRYLDAWVLVCSMIQHGFIPQLMSYQHLL 590

Query: 464 DGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            G        +A +I    R    +PD + W+++
Sbjct: 591 SGLICEGQTDKAKEIFMNSRWKDYSPDEIVWKVI 624



 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 136/493 (27%), Positives = 221/493 (44%), Gaps = 46/493 (9%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C  ++V  A  LF  M  RG   +VVSY TLI G C  G +D A ++F EM      P+ 
Sbjct: 21  CRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGRIDEAVELFGEMDQ----PDM 76

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
             Y+ LV+G+      E   +LM +   RMK E     +  A+A +VD  CRE    E  
Sbjct: 77  HMYAALVKGLCNAERGEEG-LLMLR---RMK-ELGWRPSTRAYAAVVDFRCRERKAKEAE 131

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
            + ++M +         C  +I++ C+ GR   A RV+ +M+ RG  P++ +YN++V G 
Sbjct: 132 EMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGF 191

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
           C  G   +A  LL +    G  P   TY +L+ G C +  +E A ++L+ M     +   
Sbjct: 192 CNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQ 251

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
              N  + ALC      +  ++   +     +P+ +T N++ING CK G+ + A K L  
Sbjct: 252 YTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEK 311

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
           MV+   C PD  T+++ I  L  +   QE L+ + +++ Q+   P  V Y  V+  L + 
Sbjct: 312 MVSAG-CTPDTYTYSSFIEHLCKMKGSQEGLSFIGEML-QKDVKPSTVNYTIVIHKLLKE 369

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY 424
           R        +  M+  G   D  TY                                   
Sbjct: 370 RNYGLVARTWGEMVSSGCNPDVVTY----------------------------------- 394

Query: 425 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484
              ++  C  G+++EA + L E+  +GVT + + YN ++DG   +     A  IL++M  
Sbjct: 395 TTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTS 454

Query: 485 NGLNPDAVTWRIL 497
               P+  T+ IL
Sbjct: 455 VASVPNQFTYFIL 467



 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 115/394 (29%), Positives = 189/394 (47%), Gaps = 16/394 (4%)

Query: 106 AFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVM 165
            F +L+   CR   V+    + + MP      +  +   +I+ LC +GR   A  +   M
Sbjct: 12  TFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGRIDEAVELFGEM 71

Query: 166 RKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDL 225
            +    P +  Y ++V GLC          +L    + G+ PS   Y  +V+  C E   
Sbjct: 72  DQ----PDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAYAAVVDFRCRERKA 127

Query: 226 EKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTV 285
           ++A ++LQ M  K        C   + A C     ++ L VL  M    C+P+V T N +
Sbjct: 128 KEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNAL 187

Query: 286 INGFCKMGRIEEALKVLNDMVAGKFCA--PDAVTFTTIIFGLLNVGRIQEALNLLYQVMP 343
           + GFC  G++ +A+ +LN M A   C   PDAVT+  +I G    G I+ A  LL ++M 
Sbjct: 188 VQGFCNEGKVHKAMTLLNKMRA---CGVNPDAVTYNLLIRGQCIDGHIESAFRLL-RLME 243

Query: 344 QRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLD 403
             G      TYNA++  L +  R ++A  +F+ +   G+  ++ T+  +I+GLC+S + D
Sbjct: 244 GDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKAD 303

Query: 404 EAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463
            A +F + +V      D Y Y++ I+ LC+     E + F+ E++   V P+ V Y +VI
Sbjct: 304 IAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVI 363

Query: 464 DGACKLSMKREAYQILR---EMRKNGLNPDAVTW 494
               KL  +R    + R   EM  +G NPD VT+
Sbjct: 364 H---KLLKERNYGLVARTWGEMVSSGCNPDVVTY 394



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 88/152 (57%), Gaps = 4/152 (2%)

Query: 342 MPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ 401
           M + G+ P   T+N+++ G  R  +V+ A+++F+ M   G   D  +YA +I+GLCE+ +
Sbjct: 1   MVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGR 60

Query: 402 LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNV 461
           +DEA   + ++  P    D ++YAA++KGLC + +  E +  L  + + G  P+   Y  
Sbjct: 61  IDEAVELFGEMDQP----DMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAYAA 116

Query: 462 VIDGACKLSMKREAYQILREMRKNGLNPDAVT 493
           V+D  C+    +EA ++L+EM + GL P  VT
Sbjct: 117 VVDFRCRERKAKEAEEMLQEMFEKGLAPCVVT 148



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 113/243 (46%), Gaps = 18/243 (7%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M   C   R+ EA  +  +M   G   + ++Y TL+ G+   G+ D A  +  +M     
Sbjct: 398 MRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVAS 457

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVL-------------MFKLWERMKEEEDLSVNNAAF 107
           +PN  TY +L+R ++R R VE    L             +F L++ MK+ E L  N+  +
Sbjct: 458 VPNQFTYFILLRHLVRMRLVEDVLPLTPAGVWKAIELTDVFGLFDVMKKNEFLP-NSGTY 516

Query: 108 ANLVDSLCREGYVNEVFRIAEDMPQGK-SVNEEFACGHMIDSLCRSGRNHGASRVVYVMR 166
           +++++    +G   E   +   M +   S+NE+     ++   C+S R   A  +V  M 
Sbjct: 517 SSILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYTA-LVTCFCKSKRYLDAWVLVCSMI 575

Query: 167 KRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLC--GESD 224
           + G  P L+SY  ++ GL   G   +A ++        Y P E  +KV+++GL   G SD
Sbjct: 576 QHGFIPQLMSYQHLLSGLICEGQTDKAKEIFMNSRWKDYSPDEIVWKVIIDGLIKKGHSD 635

Query: 225 LEK 227
           + +
Sbjct: 636 ISR 638



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 96/197 (48%), Gaps = 13/197 (6%)

Query: 313 PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKE 372
           PDA TF ++I G     ++  A +L +  MP RG++  +V+Y  ++ GL    R++EA E
Sbjct: 8   PDAYTFNSLIVGYCRTNQVDVARDL-FDKMPLRGFAQDVVSYATLIEGLCEAGRIDEAVE 66

Query: 373 VFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK---RFWDDIVW-PSNIHDNYVYAAMI 428
           +F  M       D   YA ++ GLC + + +E     R   ++ W PS       YAA++
Sbjct: 67  LFGEM----DQPDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPST----RAYAAVV 118

Query: 429 KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLN 488
              CR  K  EA   L E+ + G+ P +V    VI+  CK     +A ++L  M+  G  
Sbjct: 119 DFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCK 178

Query: 489 PDAVTWRILDKLHGNRG 505
           P+  T+  L +   N G
Sbjct: 179 PNVWTYNALVQGFCNEG 195


>gi|357477483|ref|XP_003609027.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510082|gb|AES91224.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 583

 Score =  191 bits (486), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 111/391 (28%), Positives = 208/391 (53%), Gaps = 5/391 (1%)

Query: 110 LVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRG 169
           L+ +L +E  + +V  + ++M + +           I+ LCR+G+ + A   +  M+  G
Sbjct: 171 LLSALVKENKIGDVEYVYKEMIKRRIHTNLNTFNIFINGLCRAGKLNKAEDAIEDMKAWG 230

Query: 170 LTPSLVSYNSIVHGLCKHGGCMRAYQ---LLEEGIQFGYLPSEHTYKVLVEGLCGESDLE 226
           ++P++V+YN++V G CK G   + Y+    ++E +     P+E T+  L++G C + ++ 
Sbjct: 231 ISPNVVTYNTLVDGYCKRGSAGKMYKAEAFMKEMLANKICPNEVTFNTLIDGFCKDENVA 290

Query: 227 KARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVI 286
            A+K  + M  +         N  +  LC      E +++   M+    +P+++T N +I
Sbjct: 291 AAKKAFEEMQKQGLKPNIVTYNSLINGLCNNGKLEEAIDLWDKMVGLGLKPNIVTYNALI 350

Query: 287 NGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
           NGFCK   ++EA KV +D V+ +   P+ +TF T+I      G ++E  +L   ++ + G
Sbjct: 351 NGFCKKKMMKEATKVFDD-VSKQELVPNVITFNTMIDAYCKEGMMEEGFSLCSSMLDE-G 408

Query: 347 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
             P + TYN ++ GL R + ++ AKE+ N M   G+  D  TY I+IDGLC++++   A+
Sbjct: 409 ILPNVSTYNCLIAGLCRKQDLQAAKELLNEMENKGLKGDVVTYNILIDGLCKNDKSRNAE 468

Query: 407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466
           +  +++       ++  Y  ++ G C  GK+  A++    +      PN+V YNV+I G 
Sbjct: 469 KLLNEMFNLGLKPNHVTYNTLMDGYCMEGKLKAALNVRTRMEKERKQPNVVTYNVLIKGY 528

Query: 467 CKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           CK++    A  +L EM + GLNP+  T+ I+
Sbjct: 529 CKINKLEAANGLLNEMLEKGLNPNRTTYDIV 559



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 122/486 (25%), Positives = 212/486 (43%), Gaps = 96/486 (19%)

Query: 8   SRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTY 67
           +++G+   ++ +M  R    N+ ++   I+G CR G+++ A    ++M+  G+ PN +TY
Sbjct: 179 NKIGDVEYVYKEMIKRRIHTNLNTFNIFINGLCRAGKLNKAEDAIEDMKAWGISPNVVTY 238

Query: 68  SVLVRGVLRTRDVERANVLMFKLWERMKE--EEDLSVNNAAFANLVDSLCREGYVNEVFR 125
           + LV G  +     +    M+K    MKE     +  N   F  L+D  C++        
Sbjct: 239 NTLVDGYCKRGSAGK----MYKAEAFMKEMLANKICPNEVTFNTLIDGFCKD-------- 286

Query: 126 IAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLC 185
             E++   K   EE                         M+K+GL P++V+YNS+++GLC
Sbjct: 287 --ENVAAAKKAFEE-------------------------MQKQGLKPNIVTYNSLINGLC 319

Query: 186 KHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTR 245
            +G    A  L ++ +  G  P+  TY  L+ G C +  +++A KV        DV +  
Sbjct: 320 NNGKLEEAIDLWDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKVFD------DVSKQE 373

Query: 246 ICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM 305
           +                              P+VIT NT+I+ +CK G +EE   + + M
Sbjct: 374 LV-----------------------------PNVITFNTMIDAYCKEGMMEEGFSLCSSM 404

Query: 306 VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLR 365
           +  +   P+  T+  +I GL     +Q A  LL + M  +G    +VTYN ++ GL +  
Sbjct: 405 L-DEGILPNVSTYNCLIAGLCRKQDLQAAKELLNE-MENKGLKGDVVTYNILIDGLCKND 462

Query: 366 RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYA 425
           +   A+++ N M  +G+  +  TY  ++DG C   +L  A      +       +   Y 
Sbjct: 463 KSRNAEKLLNEMFNLGLKPNHVTYNTLMDGYCMEGKLKAALNVRTRMEKERKQPNVVTYN 522

Query: 426 AMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR-EMRK 484
            +IKG C+  K+  A   L E+++ G+ PN                 R  Y I+R EM +
Sbjct: 523 VLIKGYCKINKLEAANGLLNEMLEKGLNPN-----------------RTTYDIVRLEMLE 565

Query: 485 NGLNPD 490
            G +PD
Sbjct: 566 KGFSPD 571



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 107/395 (27%), Positives = 188/395 (47%), Gaps = 45/395 (11%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKV---FDEMRH 57
           ++ LC   ++ +A     DMK+ G  PNVV+Y TL+ GYC+ G     YK      EM  
Sbjct: 207 INGLCRAGKLNKAEDAIEDMKAWGISPNVVTYNTLVDGYCKRGSAGKMYKAEAFMKEMLA 266

Query: 58  CGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCRE 117
             + PN +T++ L+ G  +  +V  A     K +E M +++ L  N   + +L++ LC  
Sbjct: 267 NKICPNEVTFNTLIDGFCKDENVAAAK----KAFEEM-QKQGLKPNIVTYNSLINGLCNN 321

Query: 118 GYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
           G + E   + + M              +I+  C+      A++V   + K+ L P+++++
Sbjct: 322 GKLEEAIDLWDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQELVPNVITF 381

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
           N+++   CK G     + L    +  G LP+  TY  L+ GLC + DL+ A+++L  M +
Sbjct: 382 NTMIDAYCKEGMMEEGFSLCSSMLDEGILPNVSTYNCLIAGLCRKQDLQAAKELLNEMEN 441

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
           K                                     + DV+T N +I+G CK  +   
Sbjct: 442 K-----------------------------------GLKGDVVTYNILIDGLCKNDKSRN 466

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           A K+LN+M       P+ VT+ T++ G    G+++ ALN+  ++  +R   P +VTYN +
Sbjct: 467 AEKLLNEMFNLGL-KPNHVTYNTLMDGYCMEGKLKAALNVRTRMEKERK-QPNVVTYNVL 524

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIV 392
           ++G  ++ ++E A  + N ML  G+  + TTY IV
Sbjct: 525 IKGYCKINKLEAANGLLNEMLEKGLNPNRTTYDIV 559



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 101/357 (28%), Positives = 173/357 (48%), Gaps = 34/357 (9%)

Query: 141 ACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEG 200
           +C  ++ +L +  +      V   M KR +  +L ++N  ++GLC+ G   +A   +E+ 
Sbjct: 167 SCNPLLSALVKENKIGDVEYVYKEMIKRRIHTNLNTFNIFINGLCRAGKLNKAEDAIEDM 226

Query: 201 IQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNP 260
             +G  P+  TY  LV+G C      K  K   FM   K++   +IC             
Sbjct: 227 KAWGISPNVVTYNTLVDGYCKRGSAGKMYKAEAFM---KEMLANKIC------------- 270

Query: 261 TELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTT 320
                           P+ +T NT+I+GFCK   +  A K   +M   +   P+ VT+ +
Sbjct: 271 ----------------PNEVTFNTLIDGFCKDENVAAAKKAFEEM-QKQGLKPNIVTYNS 313

Query: 321 IIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI 380
           +I GL N G+++EA++L +  M   G  P IVTYNA++ G  + + ++EA +VF+ +   
Sbjct: 314 LINGLCNNGKLEEAIDL-WDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQ 372

Query: 381 GVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEA 440
            +V +  T+  +ID  C+   ++E       ++    + +   Y  +I GLCR   +  A
Sbjct: 373 ELVPNVITFNTMIDAYCKEGMMEEGFSLCSSMLDEGILPNVSTYNCLIAGLCRKQDLQAA 432

Query: 441 VHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
              L E+ + G+  ++V YN++IDG CK    R A ++L EM   GL P+ VT+  L
Sbjct: 433 KELLNEMENKGLKGDVVTYNILIDGLCKNDKSRNAEKLLNEMFNLGLKPNHVTYNTL 489



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 97/360 (26%), Positives = 178/360 (49%), Gaps = 14/360 (3%)

Query: 146 IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY--NSIVHGLCKHGGCMRAYQLLEEGIQF 203
           +DS  ++ + H  S V + +   G  P   +   + +V    K+     AY+       +
Sbjct: 101 LDSFVKNEK-HTVSSVFHSLLLDGGRPGATALIIDMLVLAYVKNLELHCAYEAFTRAKDY 159

Query: 204 GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTEL 263
           G+  S  +   L+  L  E+ +     V + M+ ++        NI++  LC      + 
Sbjct: 160 GFKLSLTSCNPLLSALVKENKIGDVEYVYKEMIKRRIHTNLNTFNIFINGLCRAGKLNKA 219

Query: 264 LNVLVFMLQTQCQPDVITLNTVINGFCK---MGRIEEALKVLNDMVAGKFCAPDAVTFTT 320
            + +  M      P+V+T NT+++G+CK    G++ +A   + +M+A K C P+ VTF T
Sbjct: 220 EDAIEDMKAWGISPNVVTYNTLVDGYCKRGSAGKMYKAEAFMKEMLANKIC-PNEVTFNT 278

Query: 321 IIFGLL---NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCM 377
           +I G     NV   ++A    ++ M ++G  P IVTYN+++ GL    ++EEA ++++ M
Sbjct: 279 LIDGFCKDENVAAAKKA----FEEMQKQGLKPNIVTYNSLINGLCNNGKLEEAIDLWDKM 334

Query: 378 LGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKI 437
           +G+G+  +  TY  +I+G C+   + EA + +DD+     + +   +  MI   C+ G +
Sbjct: 335 VGLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQELVPNVITFNTMIDAYCKEGMM 394

Query: 438 HEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            E       ++D G+ PN+  YN +I G C+    + A ++L EM   GL  D VT+ IL
Sbjct: 395 EEGFSLCSSMLDEGILPNVSTYNCLIAGLCRKQDLQAAKELLNEMENKGLKGDVVTYNIL 454



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 92/344 (26%), Positives = 160/344 (46%), Gaps = 9/344 (2%)

Query: 1   MDQLCGLSRVGEAHK---LFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRH 57
           +D  C     G+ +K      +M +    PN V++ TLI G+C+   +  A K F+EM+ 
Sbjct: 242 VDGYCKRGSAGKMYKAEAFMKEMLANKICPNEVTFNTLIDGFCKDENVAAAKKAFEEMQK 301

Query: 58  CGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCRE 117
            G+ PN +TY+ L+ G+     +E A      LW++M     L  N   +  L++  C++
Sbjct: 302 QGLKPNIVTYNSLINGLCNNGKLEEA----IDLWDKM-VGLGLKPNIVTYNALINGFCKK 356

Query: 118 GYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
             + E  ++ +D+ + + V        MID+ C+ G       +   M   G+ P++ +Y
Sbjct: 357 KMMKEATKVFDDVSKQELVPNVITFNTMIDAYCKEGMMEEGFSLCSSMLDEGILPNVSTY 416

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
           N ++ GLC+      A +LL E    G      TY +L++GLC       A K+L  M +
Sbjct: 417 NCLIAGLCRKQDLQAAKELLNEMENKGLKGDVVTYNILIDGLCKNDKSRNAEKLLNEMFN 476

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
                     N  +   C+       LNV   M + + QP+V+T N +I G+CK+ ++E 
Sbjct: 477 LGLKPNHVTYNTLMDGYCMEGKLKAALNVRTRMEKERKQPNVVTYNVLIKGYCKINKLEA 536

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQV 341
           A  +LN+M+  K   P+  T+  +   +L  G   +    LY +
Sbjct: 537 ANGLLNEMLE-KGLNPNRTTYDIVRLEMLEKGFSPDIEGHLYNI 579



 Score = 38.9 bits (89), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 18/80 (22%), Positives = 41/80 (51%)

Query: 427 MIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG 486
           ++  L +  KI +  +   E++   +  N+  +N+ I+G C+     +A   + +M+  G
Sbjct: 171 LLSALVKENKIGDVEYVYKEMIKRRIHTNLNTFNIFINGLCRAGKLNKAEDAIEDMKAWG 230

Query: 487 LNPDAVTWRILDKLHGNRGN 506
           ++P+ VT+  L   +  RG+
Sbjct: 231 ISPNVVTYNTLVDGYCKRGS 250


>gi|18407969|ref|NP_564822.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806279|sp|Q9SH60.2|PP103_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g64100
 gi|332196071|gb|AEE34192.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 666

 Score =  191 bits (486), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 137/508 (26%), Positives = 231/508 (45%), Gaps = 69/508 (13%)

Query: 12  EAHKLFFDMKSRGHV------PNVVSYTTLIHGYC----------------RTGEMDVAY 49
           + HKL F + + G +      P+VV++ TL+HG C                 TG ++ A 
Sbjct: 153 DCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGFLE-AV 211

Query: 50  KVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFAN 109
            +FD+M   G+ P  +T++ L+ G+     V  A  L+ K+  +      L ++   +  
Sbjct: 212 ALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGK-----GLHIDVVTYGT 266

Query: 110 LVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRG 169
           +V+ +C+ G       +   M +     +      +ID LC+ G +  A  +   M ++G
Sbjct: 267 IVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKG 326

Query: 170 LTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKAR 229
           + P++ +YN ++ G C  G    A +LL + I+    P   T+  L+     E  L +A 
Sbjct: 327 IAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAE 386

Query: 230 KVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGF 289
           K                       LC      E+L+  +F       PD +T N++I GF
Sbjct: 387 K-----------------------LC-----DEMLHRCIF-------PDTVTYNSMIYGF 411

Query: 290 CKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSP 349
           CK  R ++A K + D++A    +PD VTF TII       R+ E + LL ++  +RG   
Sbjct: 412 CKHNRFDDA-KHMFDLMA----SPDVVTFNTIIDVYCRAKRVDEGMQLLREI-SRRGLVA 465

Query: 350 GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFW 409
              TYN ++ G   +  +  A+++F  M+  GV  D+ T  I++ G CE+ +L+EA   +
Sbjct: 466 NTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELF 525

Query: 410 DDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKL 469
           + I       D   Y  +I G+C+  K+ EA      L   GV P++  YNV+I G C  
Sbjct: 526 EVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGK 585

Query: 470 SMKREAYQILREMRKNGLNPDAVTWRIL 497
           S   +A  +  +M+ NG  PD  T+  L
Sbjct: 586 SAISDANVLFHKMKDNGHEPDNSTYNTL 613



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 110/465 (23%), Positives = 211/465 (45%), Gaps = 48/465 (10%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   RV EA  L   M  +G   +VV+Y T+++G C+ G+   A  +  +M    +
Sbjct: 233 INGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHI 292

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ + YS                                         ++D LC++G+ 
Sbjct: 293 KPDVVIYSA----------------------------------------IIDRLCKDGHH 312

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           ++   +  +M +       F    MID  C  GR   A R++  M +R + P ++++N++
Sbjct: 313 SDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNAL 372

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +    K G    A +L +E +     P   TY  ++ G C  +  + A+ +   M S   
Sbjct: 373 ISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMASPDV 432

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           V    I ++Y RA    K   E + +L  + +     +  T NT+I+GFC++  +  A  
Sbjct: 433 VTFNTIIDVYCRA----KRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQD 488

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +  +M++   C PD +T   +++G     +++EAL  L++V+         V YN ++ G
Sbjct: 489 LFQEMISHGVC-PDTITCNILLYGFCENEKLEEALE-LFEVIQMSKIDLDTVAYNIIIHG 546

Query: 361 LFRLRRVEEAKEVFNCMLGI-GVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
           + +  +V+EA ++F C L I GV  D  TY ++I G C  + + +A   +  +    +  
Sbjct: 547 MCKGSKVDEAWDLF-CSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEP 605

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
           DN  Y  +I+G  ++G+I +++  + E+  +G + +     +V D
Sbjct: 606 DNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFTIKMVAD 650



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 105/414 (25%), Positives = 181/414 (43%), Gaps = 28/414 (6%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           +C +     A  L   M+     P+VV Y+ +I   C+ G    A  +F EM   G+ PN
Sbjct: 271 MCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPN 330

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             TY+ ++ G         A  L+  + ER     +++ +   F  L+ +  +EG + E 
Sbjct: 331 VFTYNCMIDGFCSFGRWSDAQRLLRDMIER-----EINPDVLTFNALISASVKEGKLFEA 385

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            ++ ++M       +      MI   C+  R   A  +  +M     +P +V++N+I+  
Sbjct: 386 EKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMA----SPDVVTFNTIIDV 441

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            C+        QLL E  + G + +  TY  L+ G C   +L  A+ + Q M+S      
Sbjct: 442 YCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPD 501

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
           T  CNI L   C  +   E L +   +  ++   D +  N +I+G CK  +++EA  +  
Sbjct: 502 TITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDL-- 559

Query: 304 DMVAGKFCA-------PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
                 FC+       PD  T+  +I G      I +A N+L+  M   G+ P   TYN 
Sbjct: 560 ------FCSLPIHGVEPDVQTYNVMISGFCGKSAISDA-NVLFHKMKDNGHEPDNSTYNT 612

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD 410
           ++RG  +   ++++ E+ + M   G   D+ T  +V D L    +LD  K F D
Sbjct: 613 LIRGCLKAGEIDKSIELISEMRSNGFSGDAFTIKMVAD-LITDGRLD--KSFSD 663



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 108/228 (47%), Gaps = 6/228 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C   RV E  +L  ++  RG V N  +Y TLIHG+C    ++ A  +F EM   GV
Sbjct: 439 IDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGV 498

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+++T ++L+ G      +E A     +L+E ++  + + ++  A+  ++  +C+   V
Sbjct: 499 CPDTITCNILLYGFCENEKLEEA----LELFEVIQMSK-IDLDTVAYNIIIHGMCKGSKV 553

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E + +   +P      +      MI   C       A+ + + M+  G  P   +YN++
Sbjct: 554 DEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTL 613

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKA 228
           + G  K G   ++ +L+ E    G+     T K +V  L  +  L+K+
Sbjct: 614 IRGCLKAGEIDKSIELISEMRSNGFSGDAFTIK-MVADLITDGRLDKS 660


>gi|218191848|gb|EEC74275.1| hypothetical protein OsI_09511 [Oryza sativa Indica Group]
          Length = 933

 Score =  191 bits (486), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 137/539 (25%), Positives = 249/539 (46%), Gaps = 44/539 (8%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R  EA+ LF +M   G VPN V+Y TLI    + G       +  EM   GV+ +
Sbjct: 284 LCRDGRFSEAYALFREMDKVGAVPNHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMD 343

Query: 64  SLTYSVLVRGVLRT-RDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
            +TY+ L+  + +  +  E  + L F L       ++LS+N   +  L+D+LC+   V+E
Sbjct: 344 LVTYTALMDWLGKQGKTDEVKDTLRFAL------SDNLSLNGVTYTVLIDALCKAHNVDE 397

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY----- 177
             ++  +M +            +I+   + G    A+    +M++RG+ P++V+Y     
Sbjct: 398 AEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLID 457

Query: 178 ------------------------------NSIVHGLCKHGGCMRAYQLLEEGIQFGYLP 207
                                         +S+V+GL ++G    A  L ++    G   
Sbjct: 458 GFFKFQGQDAALEVYHDMLCEGVEVNKFIVDSLVNGLRQNGKIEEAMALFKDASGSGLSL 517

Query: 208 SEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVL 267
               Y  L++GL    D+  A K  Q ++ +  +    + N+++  LC++    E  ++L
Sbjct: 518 DHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPDAVVYNVFINCLCILGKFKEAKSIL 577

Query: 268 VFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLN 327
             M     +PD  T NT+I   C+ G   +ALK+L++M       P+ +T+ T++ GL  
Sbjct: 578 TEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKLLHEMKMSSI-KPNLITYNTLVAGLFG 636

Query: 328 VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADST 387
            G +++A  LL + M   G+SP  +T+  VL+   + RR++   ++   M+  G+ AD T
Sbjct: 637 TGAVEKAKYLLNE-MVSAGFSPSSLTHRRVLQACSQSRRLDVILDIHEWMMNAGLHADIT 695

Query: 388 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYEL 447
            Y  ++  LC      +A    ++++      D   + A+I G C+S  +  A     ++
Sbjct: 696 VYNTLLQVLCYHGMTRKATVVLEEMLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQM 755

Query: 448 VDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           +   ++PNI  +N ++ G   +    EA  +L EM K+GL P+ +T+ IL   HG + N
Sbjct: 756 LHQNISPNIATFNTLLGGLESVGRIGEAGTVLIEMEKSGLEPNNLTYDILVTGHGKQSN 814



 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 141/504 (27%), Positives = 229/504 (45%), Gaps = 44/504 (8%)

Query: 4   LCGLSRVGE--AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVL 61
           L GL R G+  A     D     H  +V+ + TLI GYCR G+   A  V D M   G+ 
Sbjct: 142 LAGLCRNGQVDAAAALADRGGGIHALDVIGWNTLIAGYCRVGDTPAALSVADRMTAQGLP 201

Query: 62  PNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVN 121
            + + Y+ LV G  R   V+ A  ++      M +E  +  N A +   +   CR   V 
Sbjct: 202 MDVVGYNTLVAGFCRAGQVDAARGVL-----DMMKEAGVDPNVATYTPFIVYYCRTKGVE 256

Query: 122 EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
           E F + E M +   + +      ++  LCR GR   A  +   M K G  P+ V+Y +++
Sbjct: 257 EAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVGAVPNHVTYCTLI 316

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
             L K G       LL E +  G +    TY  L++ L  +   ++ +  L+F LS    
Sbjct: 317 DSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDEVKDTLRFALSD--- 373

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
                 N+ L                            +T   +I+  CK   ++EA +V
Sbjct: 374 ------NLSLNG--------------------------VTYTVLIDALCKAHNVDEAEQV 401

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
           L +M   K  +P+ VTF+++I G +  G + +A     ++M +RG +P +VTY  ++ G 
Sbjct: 402 LLEM-EEKSISPNVVTFSSVINGFVKRGLLDKATEY-KRMMKERGINPNVVTYGTLIDGF 459

Query: 362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
           F+ +  + A EV++ ML  GV  +      +++GL ++ +++EA   + D        D+
Sbjct: 460 FKFQGQDAALEVYHDMLCEGVEVNKFIVDSLVNGLRQNGKIEEAMALFKDASGSGLSLDH 519

Query: 422 YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
             Y  +I GL ++G +  A  F  EL+D  + P+ V YNV I+  C L   +EA  IL E
Sbjct: 520 VNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPDAVVYNVFINCLCILGKFKEAKSILTE 579

Query: 482 MRKNGLNPDAVTWRILDKLHGNRG 505
           MR  GL PD  T+  +   H  +G
Sbjct: 580 MRNMGLKPDQSTYNTMIVSHCRKG 603



 Score =  184 bits (468), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 131/527 (24%), Positives = 240/527 (45%), Gaps = 32/527 (6%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    V EA ++  +M+ +   PNVV+++++I+G+ + G +D A +    M+  G+
Sbjct: 386 IDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKATEYKRMMKERGI 445

Query: 61  LPNSLTYSVLVRGVLRTRDVERA-------------------NVLMFKLWERMKEEE--- 98
            PN +TY  L+ G  + +  + A                   + L+  L +  K EE   
Sbjct: 446 NPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEGVEVNKFIVDSLVNGLRQNGKIEEAMA 505

Query: 99  --------DLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC 150
                    LS+++  +  L+D L + G +   F+  +++     + +       I+ LC
Sbjct: 506 LFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPDAVVYNVFINCLC 565

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
             G+   A  ++  MR  GL P   +YN+++   C+ G   +A +LL E       P+  
Sbjct: 566 ILGKFKEAKSILTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKLLHEMKMSSIKPNLI 625

Query: 211 TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM 270
           TY  LV GL G   +EKA+ +L  M+S      +      L+A    +    +L++  +M
Sbjct: 626 TYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSLTHRRVLQACSQSRRLDVILDIHEWM 685

Query: 271 LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR 330
           +      D+   NT++   C  G   +A  VL +M+ G   APD +TF  +I G      
Sbjct: 686 MNAGLHADITVYNTLLQVLCYHGMTRKATVVLEEML-GSGIAPDTITFNALILGHCKSSH 744

Query: 331 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYA 390
           +  A     Q++ Q   SP I T+N +L GL  + R+ EA  V   M   G+  ++ TY 
Sbjct: 745 LDNAFATYAQMLHQN-ISPNIATFNTLLGGLESVGRIGEAGTVLIEMEKSGLEPNNLTYD 803

Query: 391 IVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 450
           I++ G  + +   EA R + ++V    +     Y A+I    ++G + +A     ++   
Sbjct: 804 ILVTGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYNALISDFTKAGMMTQAKELFKDMQKR 863

Query: 451 GVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           GV P    Y++++ G  ++    E  + L++M++ G +P   T   +
Sbjct: 864 GVHPTSCTYDILVSGWSRIRNGTEVKKCLKDMKEKGFSPSKGTLSFI 910



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 76/337 (22%), Positives = 138/337 (40%), Gaps = 42/337 (12%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C      +A KL  +MK     PN+++Y TL+ G   TG ++ A  + +EM   G  P+S
Sbjct: 600 CRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSS 659

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           LT+  +++   ++R ++    ++  + E M     L  +   +  L+  LC  G   +  
Sbjct: 660 LTHRRVLQACSQSRRLD----VILDIHEWMMNA-GLHADITVYNTLLQVLCYHGMTRKAT 714

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRS-------------------------------- 152
            + E+M       +      +I   C+S                                
Sbjct: 715 VVLEEMLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLGGL 774

Query: 153 ---GRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSE 209
              GR   A  V+  M K GL P+ ++Y+ +V G  K    + A +L  E +  G++P  
Sbjct: 775 ESVGRIGEAGTVLIEMEKSGLEPNNLTYDILVTGHGKQSNKVEAMRLYCEMVGKGFVPKV 834

Query: 210 HTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC-NIYLRALCLIKNPTELLNVLV 268
            TY  L+        + +A+++ + M  K+ V  T    +I +     I+N TE+   L 
Sbjct: 835 STYNALISDFTKAGMMTQAKELFKDM-QKRGVHPTSCTYDILVSGWSRIRNGTEVKKCLK 893

Query: 269 FMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM 305
            M +    P   TL+ +   F K G   +A ++L ++
Sbjct: 894 DMKEKGFSPSKGTLSFICRAFSKPGMTWQAQRLLKNL 930


>gi|218188645|gb|EEC71072.1| hypothetical protein OsI_02831 [Oryza sativa Indica Group]
          Length = 800

 Score =  191 bits (486), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 145/527 (27%), Positives = 247/527 (46%), Gaps = 33/527 (6%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D L    R+ EA  +  ++ + G   +VV  TTL+HGYC   E+  A  +F+E    G+
Sbjct: 254 VDVLVKGGRMEEALHIKDELLATGKKMSVVLATTLMHGYCLQREVRKALDIFEETLRDGL 313

Query: 61  LPNSLTYSVLVRGVLRTRDVERA------------------------NVLMFKLWER--- 93
           +P  +TY+VL+RG       E+A                         +L  KLW+    
Sbjct: 314 VPTDVTYTVLIRGCTEEGMPEKAYELCRQMRDHGLLPSTNEFNMVIKGLLNDKLWKDAVS 373

Query: 94  -MKEEEDLSVNNAAFAN-LVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGH-MIDSLC 150
             KE  D  + +A   N L+  LC+   + E   + E M +   V       H ++   C
Sbjct: 374 LFKEMADSGIPDAFTYNILIHWLCQRRKIREALNLWEKMNE-TGVKPYIVTYHSLLLCYC 432

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
            +G    A ++   M  +G TP++V+Y +++ G        +AY LL E  Q G   +++
Sbjct: 433 VNGCMDEAVKLYTEMPGKGFTPNVVTYTTLMKGHINKAAFDKAYALLAEMKQNGVSCNDY 492

Query: 211 TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM 270
           TY  L+ GLC    + +  ++L+   ++  V      N  +              V   M
Sbjct: 493 TYNTLINGLCVVGRVCEVGEMLKRFETEGFVPTAMTYNSIINGFIKAGMMGSAFAVYQQM 552

Query: 271 LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR 330
                 P+++T  + I+G+CK    + ALK+LND V  K   PD   + ++I+G    G 
Sbjct: 553 CAKGIPPNIVTYTSFIDGYCKTSCCDLALKMLND-VRCKGLRPDIAAYNSLIYGFCQEGN 611

Query: 331 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYA 390
           +  AL +L  +M + G  P I  YN+ + G   L+ +EEA   +  M+  G+  D+ TY 
Sbjct: 612 MSHALQVLV-LMLKDGLLPNISVYNSFITGYKNLKMMEEALRFYEKMIKEGIDLDTATYT 670

Query: 391 IVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 450
            +IDG  +   +  A + + ++V   NI D+  + A+  GLCR+G I +A   L E+   
Sbjct: 671 TLIDGFSKDGNVTFALKLYSEMVAKGNIPDHITFTALTHGLCRNGDIDDARKLLDEMNRL 730

Query: 451 GVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            + PN++ YN++I+G  +    +EA+++  EM +  + PD  T+ IL
Sbjct: 731 DIRPNVLMYNMLINGYLRNGKLQEAFRLHDEMLERKIMPDDTTYDIL 777



 Score =  164 bits (416), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 129/530 (24%), Positives = 240/530 (45%), Gaps = 44/530 (8%)

Query: 19  DMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTR 78
           +M+ +GH  +   +  ++    + G  D A ++FDEM    + P+    SV +  + + R
Sbjct: 167 EMRGKGHPLDAWMFDVVMRACFKEGMYDDAVRLFDEMPASEIEPDQRVCSVAIASLCKLR 226

Query: 79  DVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDM-PQGKSVN 137
           D  RA +++ K+ +      D + N+     +VD L + G + E   I +++   GK ++
Sbjct: 227 DANRALLVLRKMQDAGFVPWDFTFNS-----VVDVLVKGGRMEEALHIKDELLATGKKMS 281

Query: 138 EEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLL 197
              A   ++   C       A  +     + GL P+ V+Y  ++ G  + G   +AY+L 
Sbjct: 282 VVLAT-TLMHGYCLQREVRKALDIFEETLRDGLVPTDVTYTVLIRGCTEEGMPEKAYELC 340

Query: 198 EEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLI 257
            +    G LPS + + ++++GL  +   + A  + + M +   +      NI +  LC  
Sbjct: 341 RQMRDHGLLPSTNEFNMVIKGLLNDKLWKDAVSLFKEM-ADSGIPDAFTYNILIHWLCQR 399

Query: 258 KNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVT 317
           +   E LN+   M +T  +P ++T ++++  +C  G ++EA+K+  +M  GK   P+ VT
Sbjct: 400 RKIREALNLWEKMNETGVKPYIVTYHSLLLCYCVNGCMDEAVKLYTEM-PGKGFTPNVVT 458

Query: 318 FTTIIFGLLNVGRIQEALNLLYQV------------------------------MPQR-- 345
           +TT++ G +N     +A  LL ++                              M +R  
Sbjct: 459 YTTLMKGHINKAAFDKAYALLAEMKQNGVSCNDYTYNTLINGLCVVGRVCEVGEMLKRFE 518

Query: 346 --GYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLD 403
             G+ P  +TYN+++ G  +   +  A  V+  M   G+  +  TY   IDG C+++  D
Sbjct: 519 TEGFVPTAMTYNSIINGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYTSFIDGYCKTSCCD 578

Query: 404 EAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463
            A +  +D+       D   Y ++I G C+ G +  A+  L  ++  G+ PNI  YN  I
Sbjct: 579 LALKMLNDVRCKGLRPDIAAYNSLIYGFCQEGNMSHALQVLVLMLKDGLLPNISVYNSFI 638

Query: 464 DGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN-DFGLRI 512
            G   L M  EA +   +M K G++ D  T+  L       GN  F L++
Sbjct: 639 TGYKNLKMMEEALRFYEKMIKEGIDLDTATYTTLIDGFSKDGNVTFALKL 688



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 109/425 (25%), Positives = 191/425 (44%), Gaps = 42/425 (9%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   ++ EA  L+  M   G  P +V+Y +L+  YC  G MD A K++ EM   G  PN
Sbjct: 396 LCQRRKIREALNLWEKMNETGVKPYIVTYHSLLLCYCVNGCMDEAVKLYTEMPGKGFTPN 455

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY+ L++G +     ++A  L+ ++     ++  +S N+  +  L++ LC  G V EV
Sbjct: 456 VVTYTTLMKGHINKAAFDKAYALLAEM-----KQNGVSCNDYTYNTLINGLCVVGRVCEV 510

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             + +       V        +I+   ++G    A  V   M  +G+ P++V+Y S + G
Sbjct: 511 GEMLKRFETEGFVPTAMTYNSIINGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYTSFIDG 570

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK   C  A ++L +    G  P    Y  L+ G C E ++  A               
Sbjct: 571 YCKTSCCDLALKMLNDVRCKGLRPDIAAYNSLIYGFCQEGNMSHA--------------- 615

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                               L VLV ML+    P++   N+ I G+  +  +EEAL+   
Sbjct: 616 --------------------LQVLVLMLKDGLLPNISVYNSFITGYKNLKMMEEALRFYE 655

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            M+       D  T+TT+I G    G +  AL L Y  M  +G  P  +T+ A+  GL R
Sbjct: 656 KMIKEGIDL-DTATYTTLIDGFSKDGNVTFALKL-YSEMVAKGNIPDHITFTALTHGLCR 713

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
              +++A+++ + M  + +  +   Y ++I+G   + +L EA R  D+++    + D+  
Sbjct: 714 NGDIDDARKLLDEMNRLDIRPNVLMYNMLINGYLRNGKLQEAFRLHDEMLERKIMPDDTT 773

Query: 424 YAAMI 428
           Y  ++
Sbjct: 774 YDILV 778



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 90/342 (26%), Positives = 161/342 (47%), Gaps = 5/342 (1%)

Query: 165 MRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESD 224
           M  RG+TP   S   ++    +      A  LL E    G+      + V++     E  
Sbjct: 133 MEARGVTPDAKSRTDLLAVTARSASAADALALLAEMRGKGHPLDAWMFDVVMRACFKEGM 192

Query: 225 LEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNT 284
            + A ++   M + +     R+C++ + +LC +++    L VL  M      P   T N+
Sbjct: 193 YDDAVRLFDEMPASEIEPDQRVCSVAIASLCKLRDANRALLVLRKMQDAGFVPWDFTFNS 252

Query: 285 VINGFCKMGRIEEALKVLNDMVA-GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMP 343
           V++   K GR+EEAL + ++++A GK  +   V  TT++ G      +++AL++  + + 
Sbjct: 253 VVDVLVKGGRMEEALHIKDELLATGKKMS--VVLATTLMHGYCLQREVRKALDIFEETL- 309

Query: 344 QRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLD 403
           + G  P  VTY  ++RG       E+A E+   M   G++  +  + +VI GL       
Sbjct: 310 RDGLVPTDVTYTVLIRGCTEEGMPEKAYELCRQMRDHGLLPSTNEFNMVIKGLLNDKLWK 369

Query: 404 EAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463
           +A   + ++   S I D + Y  +I  LC+  KI EA++   ++ ++GV P IV Y+ ++
Sbjct: 370 DAVSLFKEMA-DSGIPDAFTYNILIHWLCQRRKIREALNLWEKMNETGVKPYIVTYHSLL 428

Query: 464 DGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
              C      EA ++  EM   G  P+ VT+  L K H N+ 
Sbjct: 429 LCYCVNGCMDEAVKLYTEMPGKGFTPNVVTYTTLMKGHINKA 470



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 112/216 (51%), Gaps = 5/216 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C  S    A K+  D++ +G  P++ +Y +LI+G+C+ G M  A +V   M   G+
Sbjct: 568 IDGYCKTSCCDLALKMLNDVRCKGLRPDIAAYNSLIYGFCQEGNMSHALQVLVLMLKDGL 627

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           LPN   Y+  + G    + +E A     + +E+M +E  + ++ A +  L+D   ++G V
Sbjct: 628 LPNISVYNSFITGYKNLKMMEEA----LRFYEKMIKE-GIDLDTATYTTLIDGFSKDGNV 682

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
               ++  +M    ++ +      +   LCR+G    A +++  M +  + P+++ YN +
Sbjct: 683 TFALKLYSEMVAKGNIPDHITFTALTHGLCRNGDIDDARKLLDEMNRLDIRPNVLMYNML 742

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLV 216
           ++G  ++G    A++L +E ++   +P + TY +LV
Sbjct: 743 INGYLRNGKLQEAFRLHDEMLERKIMPDDTTYDILV 778


>gi|242069877|ref|XP_002450215.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
 gi|241936058|gb|EES09203.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
          Length = 862

 Score =  191 bits (485), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 131/499 (26%), Positives = 240/499 (48%), Gaps = 11/499 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    V  A  +   M  +G   +VV+Y+T+I G C+   +D A  V   M   GV
Sbjct: 206 IDGLCKAQAVDRAEGVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVDRAEGVLQHMIDKGV 265

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TY+ ++ G+ + + V+RA  ++  + ++  + + ++ N      ++D LC+   V
Sbjct: 266 KPDVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYN-----TIIDGLCKAQAV 320

Query: 121 NEVFRIAEDM--PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
           +    + + M     K   + + C  +I     +G      R +  M  RGL P +V+Y+
Sbjct: 321 DRADGVLQHMIDKDVKPDIQTYNC--LIHGYLSTGEWKEVVRRLEEMYARGLDPDVVTYS 378

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
            ++  LCK+G C  A ++    I+ G  P+   Y +L+ G      +     +L  M++ 
Sbjct: 379 LLLDYLCKNGKCTEARKIFYCMIRKGIKPNVTIYGILLHGYAARGAIADLTDLLDLMVAN 438

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
                  I NI L A        E +++   M Q    PDV+T   +I+  CK+GR+++A
Sbjct: 439 GISPNNYIFNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDALCKLGRVDDA 498

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
           +   N M+      P++V F ++++GL  V R ++A  L +++  Q G  P +V +N ++
Sbjct: 499 VLKFNQMINDGV-TPNSVVFNSLVYGLCTVDRWEKAEELFFEMWDQ-GVRPNVVFFNTIM 556

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
             L    +V  A+ + + M  +GV  +  +Y  +I G C + + DEA +  D +V     
Sbjct: 557 CNLCNEGQVMVAQRLIDSMERVGVRPNVISYNTLIGGHCLAGRTDEAAQLLDVMVSVGLK 616

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI 478
            D   Y  +++G C++G+I  A     E++  GVTP  V Y+ ++ G        EA ++
Sbjct: 617 PDLISYDTLLRGYCKTGRIDNAYCLFREMLRKGVTPGAVTYSTILQGLFHTRRFSEAKEL 676

Query: 479 LREMRKNGLNPDAVTWRIL 497
              M K+G   D  T+ I+
Sbjct: 677 YLNMIKSGQQWDIYTYNII 695



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 143/562 (25%), Positives = 252/562 (44%), Gaps = 77/562 (13%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    V  A  +   M  +G  P+VV+Y T+I G C+   +D A  V   M   GV
Sbjct: 241 IDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGV 300

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TY+ ++ G+ + + V+RA+ ++  + ++     D+  +   +  L+      G  
Sbjct: 301 KPDVVTYNTIIDGLCKAQAVDRADGVLQHMIDK-----DVKPDIQTYNCLIHGYLSTGEW 355

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            EV R  E+M       +      ++D LC++G+   A ++ Y M ++G+ P++  Y  +
Sbjct: 356 KEVVRRLEEMYARGLDPDVVTYSLLLDYLCKNGKCTEARKIFYCMIRKGIKPNVTIYGIL 415

Query: 181 VHGLCKHGGCMRAYQLLE----EGI-------------------------------QFGY 205
           +HG    G       LL+     GI                               Q G 
Sbjct: 416 LHGYAARGAIADLTDLLDLMVANGISPNNYIFNIVLCAYAKKAMIDEAMHIFSRMSQHGL 475

Query: 206 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLI---KNPTE 262
            P   TY +L++ LC    ++ A      M++      + + N  +  LC +   +   E
Sbjct: 476 SPDVVTYGILIDALCKLGRVDDAVLKFNQMINDGVTPNSVVFNSLVYGLCTVDRWEKAEE 535

Query: 263 LL----------NVLVF----------------------MLQTQCQPDVITLNTVINGFC 290
           L           NV+ F                      M +   +P+VI+ NT+I G C
Sbjct: 536 LFFEMWDQGVRPNVVFFNTIMCNLCNEGQVMVAQRLIDSMERVGVRPNVISYNTLIGGHC 595

Query: 291 KMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG 350
             GR +EA ++L+ MV+     PD +++ T++ G    GRI  A   L++ M ++G +PG
Sbjct: 596 LAGRTDEAAQLLDVMVSVGL-KPDLISYDTLLRGYCKTGRIDNAY-CLFREMLRKGVTPG 653

Query: 351 IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD 410
            VTY+ +L+GLF  RR  EAKE++  M+  G   D  TY I+++GLC++N +DEA + + 
Sbjct: 654 AVTYSTILQGLFHTRRFSEAKELYLNMIKSGQQWDIYTYNIILNGLCKTNCVDEAFKIFQ 713

Query: 411 DIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLS 470
            +       +   +  MI  L + G+  +A+     +   G+ PN+V Y +++    +  
Sbjct: 714 SLCSKDLRPNIITFTIMIDVLFKGGRKKDAMDLFASIPSHGLVPNVVTYCIMMKNIIQEG 773

Query: 471 MKREAYQILREMRKNGLNPDAV 492
           +  E   +   M K+G  PD+V
Sbjct: 774 LLDEFDNLFLAMEKSGCTPDSV 795



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 127/497 (25%), Positives = 230/497 (46%), Gaps = 9/497 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVF-DEMRHCGVLP 62
            C L R+      F  +   G   N V    L++G C    +D A  +    M   G +P
Sbjct: 100 FCRLGRIEHGFAAFGLILKTGWRVNEVVINQLLNGLCDAKRVDEAMDILLRRMPEFGCMP 159

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEE--DLSVNNAAFANLVDSLCREGYV 120
           N ++ + L++G+   + VE A     +L   M E+   + + N   +  ++D LC+   V
Sbjct: 160 NVVSCNTLLKGLCNEKRVEEA----LELLHTMAEDGGGNCTPNVVTYNTIIDGLCKAQAV 215

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +    + + M       +      +ID LC++     A  V+  M  +G+ P +V+YN+I
Sbjct: 216 DRAEGVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTI 275

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GLCK     RA  +L+  I  G  P   TY  +++GLC    +++A  VLQ M+ K  
Sbjct: 276 IDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRADGVLQHMIDKDV 335

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
               +  N  +          E++  L  M      PDV+T + +++  CK G+  EA K
Sbjct: 336 KPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPDVVTYSLLLDYLCKNGKCTEARK 395

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +   M+  K   P+   +  ++ G    G I +  +LL  +M   G SP    +N VL  
Sbjct: 396 IFYCMIR-KGIKPNVTIYGILLHGYAARGAIADLTDLL-DLMVANGISPNNYIFNIVLCA 453

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
             +   ++EA  +F+ M   G+  D  TY I+ID LC+  ++D+A   ++ ++      +
Sbjct: 454 YAKKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDALCKLGRVDDAVLKFNQMINDGVTPN 513

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
           + V+ +++ GLC   +  +A    +E+ D GV PN+V +N ++   C       A +++ 
Sbjct: 514 SVVFNSLVYGLCTVDRWEKAEELFFEMWDQGVRPNVVFFNTIMCNLCNEGQVMVAQRLID 573

Query: 481 EMRKNGLNPDAVTWRIL 497
            M + G+ P+ +++  L
Sbjct: 574 SMERVGVRPNVISYNTL 590



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 119/463 (25%), Positives = 210/463 (45%), Gaps = 42/463 (9%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   +  EA K+F+ M  +G  PNV  Y  L+HGY   G +     + D M   G+
Sbjct: 381 LDYLCKNGKCTEARKIFYCMIRKGIKPNVTIYGILLHGYAARGAIADLTDLLDLMVANGI 440

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN+  +++++    +   ++ A      ++ RM  +  LS +   +  L+D+LC+ G V
Sbjct: 441 SPNNYIFNIVLCAYAKKAMIDEA----MHIFSRM-SQHGLSPDVVTYGILIDALCKLGRV 495

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           ++       M              ++  LC   R   A  + + M  +G+ P++V +N+I
Sbjct: 496 DDAVLKFNQMINDGVTPNSVVFNSLVYGLCTVDRWEKAEELFFEMWDQGVRPNVVFFNTI 555

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +  LC  G  M A +L++   + G  P+  +Y  L+ G C     ++A ++L  M+S   
Sbjct: 556 MCNLCNEGQVMVAQRLIDSMERVGVRPNVISYNTLIGGHCLAGRTDEAAQLLDVMVS--- 612

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                              +PD+I+ +T++ G+CK GRI+ A  
Sbjct: 613 --------------------------------VGLKPDLISYDTLLRGYCKTGRIDNAYC 640

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +  +M+  K   P AVT++TI+ GL +  R  EA  L Y  M + G    I TYN +L G
Sbjct: 641 LFREMLR-KGVTPGAVTYSTILQGLFHTRRFSEAKEL-YLNMIKSGQQWDIYTYNIILNG 698

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L +   V+EA ++F  +    +  +  T+ I+ID L +  +  +A   +  I     + +
Sbjct: 699 LCKTNCVDEAFKIFQSLCSKDLRPNIITFTIMIDVLFKGGRKKDAMDLFASIPSHGLVPN 758

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463
              Y  M+K + + G + E  +    +  SG TP+ V  N +I
Sbjct: 759 VVTYCIMMKNIIQEGLLDEFDNLFLAMEKSGCTPDSVMLNAII 801



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 102/335 (30%), Positives = 163/335 (48%), Gaps = 8/335 (2%)

Query: 172 PSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKV 231
           P L +Y+ +    C+ G     +      ++ G+  +E     L+ GLC    +++A  +
Sbjct: 88  PDLCTYSILTGCFCRLGRIEHGFAAFGLILKTGWRVNEVVINQLLNGLCDAKRVDEAMDI 147

Query: 232 L-QFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQT---QCQPDVITLNTVIN 287
           L + M     +     CN  L+ LC  K   E L +L  M +     C P+V+T NT+I+
Sbjct: 148 LLRRMPEFGCMPNVVSCNTLLKGLCNEKRVEEALELLHTMAEDGGGNCTPNVVTYNTIID 207

Query: 288 GFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGY 347
           G CK   ++ A  VL  M+  K    D VT++TII GL     +  A  +L Q M  +G 
Sbjct: 208 GLCKAQAVDRAEGVLQHMI-DKGVKLDVVTYSTIIDGLCKAQAVDRAEGVL-QHMIDKGV 265

Query: 348 SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKR 407
            P +VTYN ++ GL + + V+ A+ V   M+  GV  D  TY  +IDGLC++  +D A  
Sbjct: 266 KPDVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRADG 325

Query: 408 FWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGAC 467
               ++      D   Y  +I G   +G+  E V  L E+   G+ P++V Y++++D  C
Sbjct: 326 VLQHMIDKDVKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPDVVTYSLLLDYLC 385

Query: 468 KLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
           K     EA +I   M + G+ P+   + IL  LHG
Sbjct: 386 KNGKCTEARKIFYCMIRKGIKPNVTIYGIL--LHG 418



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 79/259 (30%), Positives = 132/259 (50%), Gaps = 7/259 (2%)

Query: 248 NIYLRALCLIKN--PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM 305
           N+  RA C   +     L N +      + +PD+ T + +   FC++GRIE        +
Sbjct: 57  NVVARARCSSTSELAVSLFNRMARACSNKVRPDLCTYSILTGCFCRLGRIEHGFAAFGLI 116

Query: 306 VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLR 365
           +   +   + V    ++ GL +  R+ EA+++L + MP+ G  P +V+ N +L+GL   +
Sbjct: 117 LKTGW-RVNEVVINQLLNGLCDAKRVDEAMDILLRRMPEFGCMPNVVSCNTLLKGLCNEK 175

Query: 366 RVEEAKEVFNCML---GIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
           RVEEA E+ + M    G     +  TY  +IDGLC++  +D A+     ++      D  
Sbjct: 176 RVEEALELLHTMAEDGGGNCTPNVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKLDVV 235

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
            Y+ +I GLC++  +  A   L  ++D GV P++V YN +IDG CK      A  +L+ M
Sbjct: 236 TYSTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRAEGVLQHM 295

Query: 483 RKNGLNPDAVTWR-ILDKL 500
              G+ PD VT+  I+D L
Sbjct: 296 IDKGVKPDVVTYNTIIDGL 314



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 96/368 (26%), Positives = 161/368 (43%), Gaps = 42/368 (11%)

Query: 4   LCGLSR---VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           LC  ++   + EA  +F  M   G  P+VV+Y  LI   C+ G +D A   F++M + GV
Sbjct: 451 LCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDALCKLGRVDDAVLKFNQMINDGV 510

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PNS+ ++ LV G+      E+A  L F++W+     + +  N   F  ++ +LC EG V
Sbjct: 511 TPNSVVFNSLVYGLCTVDRWEKAEELFFEMWD-----QGVRPNVVFFNTIMCNLCNEGQV 565

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
               R+ + M +        +   +I   C +GR   A++++ VM   GL P L+SY+++
Sbjct: 566 MVAQRLIDSMERVGVRPNVISYNTLIGGHCLAGRTDEAAQLLDVMVSVGLKPDLISYDTL 625

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G CK G    AY L  E ++ G  P   TY  +++GL       +A+++   M+    
Sbjct: 626 LRGYCKTGRIDNAYCLFREMLRKGVTPGAVTYSTILQGLFHTRRFSEAKELYLNMIKSGQ 685

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL- 299
                  NI L  LC      E   +   +     +P++IT   +I+   K GR ++A+ 
Sbjct: 686 QWDIYTYNIILNGLCKTNCVDEAFKIFQSLCSKDLRPNIITFTIMIDVLFKGGRKKDAMD 745

Query: 300 ----------------------KVLNDMVAGKF-----------CAPDAVTFTTIIFGLL 326
                                  ++ + +  +F           C PD+V    II  LL
Sbjct: 746 LFASIPSHGLVPNVVTYCIMMKNIIQEGLLDEFDNLFLAMEKSGCTPDSVMLNAIIRSLL 805

Query: 327 NVGRIQEA 334
             G I  A
Sbjct: 806 GRGEIMRA 813



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 106/248 (42%), Gaps = 40/248 (16%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C   R  EA +L   M S G  P+++SY TL+ GYC+TG +D AY +F EM   GV P +
Sbjct: 595 CLAGRTDEAAQLLDVMVSVGLKPDLISYDTLLRGYCKTGRIDNAYCLFREMLRKGVTPGA 654

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           +TYS +++G+  TR    A  L   + +  ++ +  + N      +++ LC+   V+E F
Sbjct: 655 VTYSTILQGLFHTRRFSEAKELYLNMIKSGQQWDIYTYNI-----ILNGLCKTNCVDEAF 709

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGR------------NHG--ASRVVY------- 163
           +I + +              MID L + GR            +HG   + V Y       
Sbjct: 710 KIFQSLCSKDLRPNIITFTIMIDVLFKGGRKKDAMDLFASIPSHGLVPNVVTYCIMMKNI 769

Query: 164 --------------VMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSE 209
                          M K G TP  V  N+I+  L   G  MRA   L +  +  +    
Sbjct: 770 IQEGLLDEFDNLFLAMEKSGCTPDSVMLNAIIRSLLGRGEIMRAGAYLSKIDEMNFSLEA 829

Query: 210 HTYKVLVE 217
            T  +L+ 
Sbjct: 830 STTSLLIS 837



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 5/128 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D L    R  +A  LF  + S G VPNVV+Y  ++    + G +D    +F  M   G 
Sbjct: 731 IDVLFKGGRKKDAMDLFASIPSHGLVPNVVTYCIMMKNIIQEGLLDEFDNLFLAMEKSGC 790

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+S+  + ++R +L   ++ RA   + K+     +E + S+  +  + L+    RE Y 
Sbjct: 791 TPDSVMLNAIIRSLLGRGEIMRAGAYLSKI-----DEMNFSLEASTTSLLISLFSREEYK 845

Query: 121 NEVFRIAE 128
           N    + E
Sbjct: 846 NHAKSLPE 853


>gi|125540047|gb|EAY86442.1| hypothetical protein OsI_07823 [Oryza sativa Indica Group]
          Length = 703

 Score =  191 bits (485), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 128/514 (24%), Positives = 237/514 (46%), Gaps = 24/514 (4%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C   +  EA ++  +M  +G  P VV+ T +I+ YC+ G M  A +V + M+  G 
Sbjct: 154 VDFRCWERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGC 213

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN  TY+ LV+G      V +A  L+ K+         ++ +   +  L+   C +G++
Sbjct: 214 KPNVWTYNALVQGFCNEGKVHKAMALLNKM-----RVCGVNPDAVTYNLLIRGQCIDGHI 268

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
              FR+   M     + +++    +I++LC+ GR   A  +   +  RG+ P+ V++NS+
Sbjct: 269 ESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSL 328

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++GLCK G    A++ LE+ +  G  P  +TY   +E LC     ++    +  ML K  
Sbjct: 329 INGLCKSGKVDIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDV 388

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
              T    I +  L   +N   +      M+ + C PDV+T  T +  +C  GR+ EA  
Sbjct: 389 KPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAEN 448

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           VL +M        D + + T++ G  ++G+   A+++L Q M      P   TY  +LR 
Sbjct: 449 VLMEMSKNGVTV-DTMAYNTLMDGHASIGQTDHAVSILKQ-MTSVASVPNQFTYFILLRH 506

Query: 361 LFRLRRVEEAKE-----------------VFNCMLGIGVVADSTTYAIVIDGLCESNQLD 403
           L R+R VE+                    +F+ M     + +S TY+ +++G  E  + +
Sbjct: 507 LVRMRLVEDVLPLTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTE 566

Query: 404 EAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463
           EA      +   S   +  +Y A++   C+S +  +A   +  ++  G  P+++ Y  ++
Sbjct: 567 EATSLVSLMKEDSISLNEDIYTALVTCFCKSKRYLDAWVLVCSMIQHGFIPHLMSYQHLL 626

Query: 464 DGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            G        +A +I    R    +PD + W+++
Sbjct: 627 SGLICEGQTDKAKEIFMNSRWKDYSPDEIVWKVI 660



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 138/493 (27%), Positives = 222/493 (45%), Gaps = 46/493 (9%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C  ++V  A  LF  M  RG   +VVSY  LI G+C TG +D A ++F EM      P+ 
Sbjct: 57  CRTNQVDVARDLFDKMPLRGFAQDVVSYAALIEGFCETGRIDEAVELFGEMDQ----PDM 112

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
             Y+ LV+G+ +    E   +LM +   RMKE      +  A+A +VD  C E    E  
Sbjct: 113 HMYAALVKGLCKAGRGEEG-LLMLR---RMKEL-GWRPSTRAYAAVVDFRCWERKAKEAE 167

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
            + ++M +         C  +I++ C+ GR   A RV+ +M+ RG  P++ +YN++V G 
Sbjct: 168 EMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGF 227

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
           C  G   +A  LL +    G  P   TY +L+ G C +  +E A ++L+ M     +   
Sbjct: 228 CNEGKVHKAMALLNKMRVCGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLI--- 284

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
                                            D  T N +IN  CK GR ++A  +  D
Sbjct: 285 --------------------------------ADQYTYNALINALCKDGRTDQACSLF-D 311

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
            +  +   P+AVTF ++I GL   G++  A   L + M   G +P   TY++ +  L ++
Sbjct: 312 SLETRGIKPNAVTFNSLINGLCKSGKVDIAWKFL-EKMVSAGCTPDTYTYSSFIEHLCKM 370

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY 424
           +  +E       ML   V   +  Y IVI  L +        R W ++V      D   Y
Sbjct: 371 KGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTY 430

Query: 425 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484
              ++  C  G+++EA + L E+  +GVT + + YN ++DG   +     A  IL++M  
Sbjct: 431 TTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTS 490

Query: 485 NGLNPDAVTWRIL 497
               P+  T+ IL
Sbjct: 491 VASVPNQFTYFIL 503



 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 127/469 (27%), Positives = 213/469 (45%), Gaps = 56/469 (11%)

Query: 31  SYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKL 90
           +Y  +I   CR  ++  A +    M   G  P++ T++ L+ G  RT  V+ A  L  K+
Sbjct: 13  TYNAVIRSLCRRADLASALRYLSLMVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKM 72

Query: 91  WERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC 150
             R       + +  ++A L++  C  G ++E   +  +M Q                  
Sbjct: 73  PLR-----GFAQDVVSYAALIEGFCETGRIDEAVELFGEMDQ------------------ 109

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
                                P +  Y ++V GLCK G       +L    + G+ PS  
Sbjct: 110 ---------------------PDMHMYAALVKGLCKAGRGEEGLLMLRRMKELGWRPSTR 148

Query: 211 TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM 270
            Y  +V+  C E   ++A ++LQ M  K        C   + A C     ++ L VL  M
Sbjct: 149 AYAAVVDFRCWERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELM 208

Query: 271 LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCA--PDAVTFTTIIFGLLNV 328
               C+P+V T N ++ GFC  G++ +A+ +LN M   + C   PDAVT+  +I G    
Sbjct: 209 KLRGCKPNVWTYNALVQGFCNEGKVHKAMALLNKM---RVCGVNPDAVTYNLLIRGQCID 265

Query: 329 GRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTT 388
           G I+ A  LL ++M   G      TYNA++  L +  R ++A  +F+ +   G+  ++ T
Sbjct: 266 GHIESAFRLL-RLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVT 324

Query: 389 YAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELV 448
           +  +I+GLC+S ++D A +F + +V      D Y Y++ I+ LC+     E + F+ E++
Sbjct: 325 FNSLINGLCKSGKVDIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEML 384

Query: 449 DSGVTPNIVCYNVVIDGACKLSMKREAYQILR---EMRKNGLNPDAVTW 494
              V P+ V Y +VI    KL  +R    + R   EM  +G NPD VT+
Sbjct: 385 QKDVKPSTVNYTIVIH---KLLKERNYGLVARTWGEMVSSGCNPDVVTY 430



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 111/230 (48%), Gaps = 14/230 (6%)

Query: 281 TLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQ 340
           T N VI   C+   +  AL+ L+ MV   +  PDA TF ++I G     ++  A +L + 
Sbjct: 13  TYNAVIRSLCRRADLASALRYLSLMVRSGW-RPDAYTFNSLIVGYCRTNQVDVARDL-FD 70

Query: 341 VMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN 400
            MP RG++  +V+Y A++ G     R++EA E+F  M       D   YA ++ GLC++ 
Sbjct: 71  KMPLRGFAQDVVSYAALIEGFCETGRIDEAVELFGEM----DQPDMHMYAALVKGLCKAG 126

Query: 401 QLDEAK---RFWDDIVW-PSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNI 456
           + +E     R   ++ W PS       YAA++   C   K  EA   L E+ + G+ P +
Sbjct: 127 RGEEGLLMLRRMKELGWRPST----RAYAAVVDFRCWERKAKEAEEMLQEMFEKGLAPCV 182

Query: 457 VCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           V    VI+  CK     +A ++L  M+  G  P+  T+  L +   N G 
Sbjct: 183 VTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGK 232



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 113/243 (46%), Gaps = 18/243 (7%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M   C   R+ EA  +  +M   G   + ++Y TL+ G+   G+ D A  +  +M     
Sbjct: 434 MRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVAS 493

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVL-------------MFKLWERMKEEEDLSVNNAAF 107
           +PN  TY +L+R ++R R VE    L             +F L++ MK+ E L  N+  +
Sbjct: 494 VPNQFTYFILLRHLVRMRLVEDVLPLTPAGVWKAIELTDVFGLFDVMKKNEFLP-NSGTY 552

Query: 108 ANLVDSLCREGYVNEVFRIAEDMPQGK-SVNEEFACGHMIDSLCRSGRNHGASRVVYVMR 166
           +++++    +G   E   +   M +   S+NE+     ++   C+S R   A  +V  M 
Sbjct: 553 SSILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYTA-LVTCFCKSKRYLDAWVLVCSMI 611

Query: 167 KRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLC--GESD 224
           + G  P L+SY  ++ GL   G   +A ++        Y P E  +KV+++GL   G SD
Sbjct: 612 QHGFIPHLMSYQHLLSGLICEGQTDKAKEIFMNSRWKDYSPDEIVWKVIIDGLIKKGHSD 671

Query: 225 LEK 227
           + +
Sbjct: 672 ISR 674


>gi|356528294|ref|XP_003532739.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 594

 Score =  191 bits (485), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 145/508 (28%), Positives = 248/508 (48%), Gaps = 25/508 (4%)

Query: 1   MDQLCGLSRV---GEAHKLFFDMKSRGHVPNVVSYTTLIHGYCR----TGEMDVAYKVFD 53
           M  LC   +V    EA  LF  M S   +P+V  +T L+    R    T  + +   +F 
Sbjct: 45  MRNLCKSGKVKNIDEALDLFQGMASMKPLPSVKDFTLLLGVIVRLKHYTTAISLVKHIFS 104

Query: 54  EMRHCGVLPNSLTYSVLVRGVLRTRDVERA-NVL--MFKLWERMKEEEDLSVNNAAFANL 110
            +   G+  +++T ++++  + R + V    +VL  MFKL         L         L
Sbjct: 105 SL---GIEADTITLNIVINCLCRLKLVAFGFSVLGTMFKL--------GLEPTVMTLTAL 153

Query: 111 VDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGL 170
           ++ LC +G V +   + + M + +   + +  G +I+ LC++G    A   +  M +R  
Sbjct: 154 INGLCVQGNVAQAVGLVDHMEKMRYPLDVYTYGVLINGLCKTGDTLAAVEWLRKMEERNW 213

Query: 171 TPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARK 230
            P++V Y++I+ GLCK G    A  L  E    G  P+  TY  L++GLC     ++   
Sbjct: 214 KPNVVVYSTIMDGLCKDGLVSEALNLCSEMSGKGVRPNLVTYACLIQGLCNFGRWKETGS 273

Query: 231 VLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFC 290
           +L  M+        +  NI + A C      +  +V+ FM+ T   PDV T N++I+ +C
Sbjct: 274 LLDEMIKMGMRLDLQTLNILVDAFCKEGKVMQAKSVIGFMILTGEGPDVFTYNSLIHIYC 333

Query: 291 KMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG 350
              ++ EA++V + MV+ + C PD V FT++I G      I + ++LL + M + G+ P 
Sbjct: 334 LQNKMNEAMRVFHLMVS-RGCLPDIVVFTSLIHGWCKDKNINKVMHLLEE-MAKMGFVPD 391

Query: 351 IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD 410
           +VT+  ++ G  +  R   AKE+F  M   G V +  T A+++DGLC+ N L EA     
Sbjct: 392 VVTWTTLIGGFCQAGRPLAAKELFLNMHKYGQVPNLQTCAVILDGLCKGNLLSEAVSL-A 450

Query: 411 DIVWPSNIHDNYV-YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKL 469
           + +  SN+  N V Y+ ++ G+C +GK++ A      L   G+  N+  Y ++I G CK 
Sbjct: 451 EAMEKSNLDLNIVIYSILLDGMCSAGKLNAAWELFSSLPGKGLQINVYTYTIMIKGLCKQ 510

Query: 470 SMKREAYQILREMRKNGLNPDAVTWRIL 497
               +A  +L  M +NG  PD  T+ + 
Sbjct: 511 GSLDKAEDLLINMEENGCLPDNCTYNVF 538



 Score =  187 bits (476), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 134/504 (26%), Positives = 217/504 (43%), Gaps = 43/504 (8%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC L  V     +   M   G  P V++ T LI+G C  G +  A  + D M       +
Sbjct: 122 LCRLKLVAFGFSVLGTMFKLGLEPTVMTLTALINGLCVQGNVAQAVGLVDHMEKMRYPLD 181

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             TY VL+ G+ +T D   A       W R  EE +   N   ++ ++D LC++G V+E 
Sbjct: 182 VYTYGVLINGLCKTGDTLAA-----VEWLRKMEERNWKPNVVVYSTIMDGLCKDGLVSEA 236

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             +  +                                   M  +G+ P+LV+Y  ++ G
Sbjct: 237 LNLCSE-----------------------------------MSGKGVRPNLVTYACLIQG 261

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LC  G       LL+E I+ G      T  +LV+  C E  + +A+ V+ FM+   +   
Sbjct: 262 LCNFGRWKETGSLLDEMIKMGMRLDLQTLNILVDAFCKEGKVMQAKSVIGFMILTGEGPD 321

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               N  +   CL     E + V   M+   C PD++   ++I+G+CK   I + + +L 
Sbjct: 322 VFTYNSLIHIYCLQNKMNEAMRVFHLMVSRGCLPDIVVFTSLIHGWCKDKNINKVMHLLE 381

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           +M    F  PD VT+TT+I G    GR   A  L    M + G  P + T   +L GL +
Sbjct: 382 EMAKMGF-VPDVVTWTTLIGGFCQAGRPLAAKELFLN-MHKYGQVPNLQTCAVILDGLCK 439

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
              + EA  +   M    +  +   Y+I++DG+C + +L+ A   +  +       + Y 
Sbjct: 440 GNLLSEAVSLAEAMEKSNLDLNIVIYSILLDGMCSAGKLNAAWELFSSLPGKGLQINVYT 499

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y  MIKGLC+ G + +A   L  + ++G  P+   YNV + G         + + L  MR
Sbjct: 500 YTIMIKGLCKQGSLDKAEDLLINMEENGCLPDNCTYNVFVQGLLTKKEIARSIKYLTIMR 559

Query: 484 KNGLNPDAVTWRI-LDKLHGNRGN 506
             G + DA T  I ++ L  N G+
Sbjct: 560 DKGFSVDAATTEITINYLSTNEGD 583



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 101/407 (24%), Positives = 171/407 (42%), Gaps = 43/407 (10%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           MD LC    V EA  L  +M  +G  PN+V+Y  LI G C  G       + DEM   G+
Sbjct: 224 MDGLCKDGLVSEALNLCSEMSGKGVRPNLVTYACLIQGLCNFGRWKETGSLLDEMIKMGM 283

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
                             D++  N+                        LVD+ C+EG V
Sbjct: 284 ----------------RLDLQTLNI------------------------LVDAFCKEGKV 303

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +   +   M       + F    +I   C   + + A RV ++M  RG  P +V + S+
Sbjct: 304 MQAKSVIGFMILTGEGPDVFTYNSLIHIYCLQNKMNEAMRVFHLMVSRGCLPDIVVFTSL 363

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +HG CK     +   LLEE  + G++P   T+  L+ G C       A+++   M     
Sbjct: 364 IHGWCKDKNINKVMHLLEEMAKMGFVPDVVTWTTLIGGFCQAGRPLAAKELFLNMHKYGQ 423

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           V   + C + L  LC     +E +++   M ++    +++  + +++G C  G++  A +
Sbjct: 424 VPNLQTCAVILDGLCKGNLLSEAVSLAEAMEKSNLDLNIVIYSILLDGMCSAGKLNAAWE 483

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           + + +  GK    +  T+T +I GL   G + +A +LL   M + G  P   TYN  ++G
Sbjct: 484 LFSSL-PGKGLQINVYTYTIMIKGLCKQGSLDKAEDLLIN-MEENGCLPDNCTYNVFVQG 541

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKR 407
           L   + +  + +    M   G   D+ T  I I+ L  +N+ D   R
Sbjct: 542 LLTKKEIARSIKYLTIMRDKGFSVDAATTEITINYL-STNEGDTRIR 587


>gi|115434588|ref|NP_001042052.1| Os01g0153200 [Oryza sativa Japonica Group]
 gi|113531583|dbj|BAF03966.1| Os01g0153200 [Oryza sativa Japonica Group]
          Length = 1139

 Score =  191 bits (485), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 129/513 (25%), Positives = 244/513 (47%), Gaps = 11/513 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D+LC   R  +A +LF +M  RG  PN V+Y  LIH  C+ G ++ A  +FD+MR  G+
Sbjct: 345 IDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGI 404

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
                 Y+ L+ G  +   ++RA  L+  +      +E L+   A+++ L+  LCR G +
Sbjct: 405 KVTVYPYNSLINGYCKQGSLDRARGLLSGM-----VKEGLTPTAASYSPLIAGLCRNGDL 459

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +    +  +M +       +    +I+  C+  +   A+R+   M    + P+ V++N +
Sbjct: 460 SSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVM 519

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G C  G   +A+QL ++ ++ G  P  +TY+ L+ GLC  S + KA + +  + +   
Sbjct: 520 IEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSYA 579

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           V         L         TE  ++   M     + D+++   ++    K    E++  
Sbjct: 580 VLNNFSLTALLYGFFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCV 639

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +  +M   +   PD + +T +I  L     + +ALN   Q M   GYSP  VT+  ++  
Sbjct: 640 LFREM-KEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQ-MVVDGYSPNTVTHTVLINN 697

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L +   +  A+ +   ML   V+ +  TY   +D       +++AK     ++   ++  
Sbjct: 698 LCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHSAML-QGHLAS 756

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              +  +IKGLC++GKI EA+  + ++ +SG +P+ + Y+ +I   CK+    +A+++  
Sbjct: 757 IVSFNILIKGLCKAGKIQEAIDLMSKITESGFSPDCISYSTIIHELCKMGDINKAFELWN 816

Query: 481 EMRKNGLNPDAVTWRILDK---LHGNRGNDFGL 510
           EM   GL PD V + I  +   +HG      G+
Sbjct: 817 EMLYKGLKPDVVAYNIFIRWCNVHGESDKALGI 849



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 123/561 (21%), Positives = 240/561 (42%), Gaps = 66/561 (11%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M  LC   RV EA ++   M + G   + V+Y TL++G+CR  E+++A ++  +M   G 
Sbjct: 240 MYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEMALRITHDMIRLGF 299

Query: 61  LPNSLTYSVLVRGVLRTRDVERA-------------------NVLMFKLW--ERMKEEE- 98
           +P+    S ++  + +   VE A                   N L+ KL   ER  + + 
Sbjct: 300 VPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFDDADR 359

Query: 99  --------DLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC 150
                    L  N   +A L+ +LC+ G + +   + + M         +    +I+  C
Sbjct: 360 LFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYC 419

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
           + G    A  ++  M K GLTP+  SY+ ++ GLC++G      +L  E  + G   + +
Sbjct: 420 KQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSCMELHREMAERGIAWNNY 479

Query: 211 TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM 270
           T+  L+ G C +  +++A ++   M+    +      N+ +   CL+ N  +   +   M
Sbjct: 480 TFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQM 539

Query: 271 LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR 330
           ++   +PD  T  ++I+G C    + +A + + D+    +   +  + T +++G    GR
Sbjct: 540 VEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADL-ENSYAVLNNFSLTALLYGFFREGR 598

Query: 331 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYA 390
             E  + L+  M  RG    +V++  ++    +    E++  +F  M   GV  D   Y 
Sbjct: 599 FTETYH-LWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVLFREMKEQGVKPDDIFYT 657

Query: 391 IVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 450
            +ID L +   + +A   WD +V      +   +  +I  LC+SG +  A     E++  
Sbjct: 658 CMIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAG 717

Query: 451 GVTPN----------------------------------IVCYNVVIDGACKLSMKREAY 476
            V PN                                  IV +N++I G CK    +EA 
Sbjct: 718 NVLPNKFTYNCFLDYFATEGDMEKAKDLHSAMLQGHLASIVSFNILIKGLCKAGKIQEAI 777

Query: 477 QILREMRKNGLNPDAVTWRIL 497
            ++ ++ ++G +PD +++  +
Sbjct: 778 DLMSKITESGFSPDCISYSTI 798



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 121/482 (25%), Positives = 220/482 (45%), Gaps = 42/482 (8%)

Query: 13  AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVR 72
           A  L   M+S G   + V Y  L++G C+   +  A +V + M + GV  + +TY  LV 
Sbjct: 217 ARGLVVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVY 276

Query: 73  GVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQ 132
           G  R  ++E A  +   +   ++     S  N +F  ++D L ++  V E F +A  +  
Sbjct: 277 GFCRMEELEMALRITHDM---IRLGFVPSEANCSF--MIDELRKKELVEEAFSLACKLGD 331

Query: 133 GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMR 192
              V   FA   +ID LC++ R   A R+   M  RGL P+ V+Y  ++H LCK G    
Sbjct: 332 LGMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIED 391

Query: 193 AYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLR 252
           A  L ++    G   + + Y  L+ G C +  L++AR                       
Sbjct: 392 ALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRAR----------------------- 428

Query: 253 ALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCA 312
                        +L  M++    P   + + +I G C+ G +   +++  +M A +  A
Sbjct: 429 ------------GLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSCMELHREM-AERGIA 475

Query: 313 PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKE 372
            +  TFT +I G     ++ EA  L +  M      P  VT+N ++ G   +  + +A +
Sbjct: 476 WNNYTFTALINGFCKDKKMDEAARL-FDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQ 534

Query: 373 VFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLC 432
           +++ M+ +G+  D+ TY  +I GLC ++ + +A  F  D+     + +N+   A++ G  
Sbjct: 535 LYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLTALLYGFF 594

Query: 433 RSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAV 492
           R G+  E  H   E+   GV  ++V + +++  A K   K ++  + REM++ G+ PD +
Sbjct: 595 REGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVLFREMKEQGVKPDDI 654

Query: 493 TW 494
            +
Sbjct: 655 FY 656



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 100/360 (27%), Positives = 176/360 (48%), Gaps = 2/360 (0%)

Query: 138 EEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLL 197
           +E+     I + C S    GA  +V  M   G+  S V YN +++GLCK+     A ++ 
Sbjct: 197 DEYVYTAGIRAYCESRNLDGARGLVVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVK 256

Query: 198 EEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLI 257
              +  G    E TY+ LV G C   +LE A ++   M+    V     C+  +  L   
Sbjct: 257 NVMVNIGVTADEVTYRTLVYGFCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKK 316

Query: 258 KNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVT 317
           +   E  ++   +      P+V   N +I+  CK  R ++A ++  +M AG+   P+ VT
Sbjct: 317 ELVEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFDDADRLFKEM-AGRGLEPNEVT 375

Query: 318 FTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCM 377
           +  +I  L   G I++AL  L+  M  +G    +  YN+++ G  +   ++ A+ + + M
Sbjct: 376 YAILIHALCKRGMIEDAL-CLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGM 434

Query: 378 LGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKI 437
           +  G+   + +Y+ +I GLC +  L        ++       +NY + A+I G C+  K+
Sbjct: 435 VKEGLTPTAASYSPLIAGLCRNGDLSSCMELHREMAERGIAWNNYTFTALINGFCKDKKM 494

Query: 438 HEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            EA     +++DS V PN V +NV+I+G C +   R+A+Q+  +M + GL PD  T+R L
Sbjct: 495 DEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSL 554



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 90/196 (45%), Gaps = 6/196 (3%)

Query: 24  GHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERA 83
           G+ PN V++T LI+  C++G +  A  +  EM    VLPN  TY+  +       D+E+A
Sbjct: 683 GYSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKA 742

Query: 84  NVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACG 143
                 L   M +    S+   +F  L+  LC+ G + E   +   + +     +  +  
Sbjct: 743 K----DLHSAMLQGHLASI--VSFNILIKGLCKAGKIQEAIDLMSKITESGFSPDCISYS 796

Query: 144 HMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQF 203
            +I  LC+ G  + A  +   M  +GL P +V+YN  +     HG   +A  +    I+ 
Sbjct: 797 TIIHELCKMGDINKAFELWNEMLYKGLKPDVVAYNIFIRWCNVHGESDKALGIYTNMIRS 856

Query: 204 GYLPSEHTYKVLVEGL 219
           G  P+  TY+ L+ G+
Sbjct: 857 GVQPNWDTYRALLSGI 872



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 60/126 (47%), Gaps = 2/126 (1%)

Query: 373 VFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH-DNYVYAAMIKGL 431
           V    L  G+  +  T + ++  L +  Q   A+  +D ++  S +H D YVY A I+  
Sbjct: 150 VLGLSLSSGITVNQYTASQILFSLVKIRQFALARDLFDKML-QSGVHLDEYVYTAGIRAY 208

Query: 432 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 491
           C S  +  A   +  +   GV  + V YNV++ G CK    +EA ++   M   G+  D 
Sbjct: 209 CESRNLDGARGLVVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADE 268

Query: 492 VTWRIL 497
           VT+R L
Sbjct: 269 VTYRTL 274



 Score = 45.4 bits (106), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 38/72 (52%)

Query: 3   QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           +LC +  + +A +L+ +M  +G  P+VV+Y   I      GE D A  ++  M   GV P
Sbjct: 801 ELCKMGDINKAFELWNEMLYKGLKPDVVAYNIFIRWCNVHGESDKALGIYTNMIRSGVQP 860

Query: 63  NSLTYSVLVRGV 74
           N  TY  L+ G+
Sbjct: 861 NWDTYRALLSGI 872


>gi|225454948|ref|XP_002277434.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
           mitochondrial-like [Vitis vinifera]
          Length = 835

 Score =  191 bits (485), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 139/507 (27%), Positives = 242/507 (47%), Gaps = 10/507 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D L     V EA  L   M  RG   +VV YT L+ G  + G  + A  +F  +    +
Sbjct: 164 IDSLFKEGNVAEAFVLQGRMVVRGIGFDVVVYTALMDGLFKAGMANNAEDMFQVLLEESL 223

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +PN +TYS L+ G  +  DV +  +L+ ++     EE+ +  N   ++++VD   ++G +
Sbjct: 224 VPNCVTYSALIDGHCKLGDVNKGELLLQEM-----EEKHIFPNVIVYSSIVDGYTKKGLL 278

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           NE   +   M Q   +   F  G +ID   ++ +   A  +   M+ RGL  +    +S 
Sbjct: 279 NEAMDVMRKMVQRNILPNVFVYGTLIDGYFKADQRGIALDLFKEMKSRGLEENNFVIDSF 338

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           V+ L + G    A +L ++ +  G LP    Y  +++G         A  + Q M  K  
Sbjct: 339 VNNLKRSGRMEEADELFKDMMSRGLLPDRVNYTSMMDGFFKAGKESDAFNIAQEMTEKSS 398

Query: 241 VDRTRICNIYLRALC-LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                  N+ +  L  L K  +E  +    M Q    PD  T NT+IN +CK G +  AL
Sbjct: 399 GFDVVAYNVLINGLFKLGKYESESFHT--GMRQLGLAPDSATFNTMINAYCKEGNLGNAL 456

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           K+LN+M +     P+++T   ++  L   G I++ ++LL  ++   G+ P   T+ AVL 
Sbjct: 457 KLLNEMKSYGL-KPNSITCNILVQRLCAAGEIEKTMDLLNDMLVM-GFHPTPTTHKAVLD 514

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
              + RR +    + + ++G+GV  D +TY  +I   C    +  A   + D++    + 
Sbjct: 515 ASSKSRRADVILHMHDQLVGMGVKLDLSTYNTLISTFCRLGMIRRATLVFKDMMGKGILA 574

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           D   Y A+I G C S  + +A     +++  GV+PN+  YN+++ G     + +EA  ++
Sbjct: 575 DIITYNALIHGYCISSHLKKAFAVHSQMLTEGVSPNVETYNILLGGLSAARLIKEAAGLV 634

Query: 480 REMRKNGLNPDAVTWRILDKLHGNRGN 506
            +M++ GL P+A T+ IL   HG  GN
Sbjct: 635 NQMKERGLVPNATTYDILVSGHGKIGN 661



 Score =  178 bits (451), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 136/531 (25%), Positives = 249/531 (46%), Gaps = 45/531 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C L  V +   L  +M+ +   PNV+ Y++++ GY + G ++ A  V  +M    +
Sbjct: 234 IDGHCKLGDVNKGELLLQEMEEKHIFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQRNI 293

Query: 61  LPNSLTYSVLV--------RGV-------LRTRDVERANVLM------FKLWERMKEEED 99
           LPN   Y  L+        RG+       +++R +E  N ++       K   RM+E ++
Sbjct: 294 LPNVFVYGTLIDGYFKADQRGIALDLFKEMKSRGLEENNFVIDSFVNNLKRSGRMEEADE 353

Query: 100 LSVNNAA---------FANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC 150
           L  +  +         + +++D   + G  ++ F IA++M +  S  +  A   +I+ L 
Sbjct: 354 LFKDMMSRGLLPDRVNYTSMMDGFFKAGKESDAFNIAQEMTEKSSGFDVVAYNVLINGLF 413

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
           + G+    S     MR+ GL P   ++N++++  CK G    A +LL E   +G  P+  
Sbjct: 414 KLGKYESES-FHTGMRQLGLAPDSATFNTMINAYCKEGNLGNALKLLNEMKSYGLKPNSI 472

Query: 211 TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM 270
           T  +LV+ LC   ++EK   +L  ML              L A    +    +L++   +
Sbjct: 473 TCNILVQRLCAAGEIEKTMDLLNDMLVMGFHPTPTTHKAVLDASSKSRRADVILHMHDQL 532

Query: 271 LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR 330
           +    + D+ T NT+I+ FC++G I  A  V  DM+ GK    D +T+  +I G      
Sbjct: 533 VGMGVKLDLSTYNTLISTFCRLGMIRRATLVFKDMM-GKGILADIITYNALIHGYCISSH 591

Query: 331 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYA 390
           +++A  +  Q++ + G SP + TYN +L GL   R ++EA  + N M   G+V ++TTY 
Sbjct: 592 LKKAFAVHSQMLTE-GVSPNVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYD 650

Query: 391 IVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 450
           I++ G  +   + E  + + +++    +     Y  +I    +  K+ +A   + E+   
Sbjct: 651 ILVSGHGKIGNMKECVKLYCEMITKGFVPKTRTYNVLISCFAKGKKMSQAKELMQEMQVR 710

Query: 451 GVTPNIVCYNVVIDGACKL--------SMKR----EAYQILREMRKNGLNP 489
           G+ PN   Y+++I G  KL        S+KR    EA ++  EM + G  P
Sbjct: 711 GIPPNSSTYDILICGWYKLSKQPELNKSLKRSYQAEAKRLFEEMNEKGFIP 761



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 126/497 (25%), Positives = 233/497 (46%), Gaps = 43/497 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C    +  A +L   MK+ G  P++V+Y TL++G+C+ G++  A K+  E+    +
Sbjct: 24  IDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAKKLMGEISLVNL 83

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +TY+ L+    +++ +E A      +++ M   + L  +   +  +++ LC+ G V
Sbjct: 84  EPNVITYTTLIDAYCKSQCLEDA----LYMYDEMT-VKSLVPDVVTYTCIMNGLCKSGKV 138

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E   +  +M +   V   F+   +IDSL + G    A  +   M  RG+   +V Y ++
Sbjct: 139 EEAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRGIGFDVVVYTAL 198

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GL K G    A  + +  ++   +P+  TY  L++G C   D+ K   +LQ M  K  
Sbjct: 199 MDGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQEMEEKH- 257

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                      +F       P+VI  +++++G+ K G + EA+ 
Sbjct: 258 ---------------------------IF-------PNVIVYSSIVDGYTKKGLLNEAMD 283

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           V+  MV  +   P+   + T+I G     +   AL+ L++ M  RG        ++ +  
Sbjct: 284 VMRKMVQ-RNILPNVFVYGTLIDGYFKADQRGIALD-LFKEMKSRGLEENNFVIDSFVNN 341

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L R  R+EEA E+F  M+  G++ D   Y  ++DG  ++ +  +A     ++   S+  D
Sbjct: 342 LKRSGRMEEADELFKDMMSRGLLPDRVNYTSMMDGFFKAGKESDAFNIAQEMTEKSSGFD 401

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              Y  +I GL + GK +E+  F   +   G+ P+   +N +I+  CK      A ++L 
Sbjct: 402 VVAYNVLINGLFKLGK-YESESFHTGMRQLGLAPDSATFNTMINAYCKEGNLGNALKLLN 460

Query: 481 EMRKNGLNPDAVTWRIL 497
           EM+  GL P+++T  IL
Sbjct: 461 EMKSYGLKPNSITCNIL 477



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/343 (26%), Positives = 157/343 (45%), Gaps = 37/343 (10%)

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
           +ID  CR+G    A  ++  M+  G  P +V+YN++++G CK G    A +L+ E     
Sbjct: 23  LIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAKKLMGEISLVN 82

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL 264
             P+  TY  L++  C    LE A  +   M  K  V                       
Sbjct: 83  LEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLV----------------------- 119

Query: 265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 324
                       PDV+T   ++NG CK G++EEA  V  +M       P+  ++ T+I  
Sbjct: 120 ------------PDVVTYTCIMNGLCKSGKVEEAKSVFREMEEVG-VVPNRFSYATLIDS 166

Query: 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 384
           L   G + EA  +L   M  RG    +V Y A++ GLF+      A+++F  +L   +V 
Sbjct: 167 LFKEGNVAEAF-VLQGRMVVRGIGFDVVVYTALMDGLFKAGMANNAEDMFQVLLEESLVP 225

Query: 385 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFL 444
           +  TY+ +IDG C+   +++ +    ++       +  VY++++ G  + G ++EA+  +
Sbjct: 226 NCVTYSALIDGHCKLGDVNKGELLLQEMEEKHIFPNVIVYSSIVDGYTKKGLLNEAMDVM 285

Query: 445 YELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
            ++V   + PN+  Y  +IDG  K   +  A  + +EM+  GL
Sbjct: 286 RKMVQRNILPNVFVYGTLIDGYFKADQRGIALDLFKEMKSRGL 328



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 85/325 (26%), Positives = 158/325 (48%), Gaps = 37/325 (11%)

Query: 173 SLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVL 232
           S+  +N ++ G C++G   RA +LLE     G  P   TY  L+ G C   DL  A+K++
Sbjct: 16  SVEHFNVLIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAKKLM 75

Query: 233 QFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKM 292
                                         L+N+         +P+VIT  T+I+ +CK 
Sbjct: 76  --------------------------GEISLVNL---------EPNVITYTTLIDAYCKS 100

Query: 293 GRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIV 352
             +E+AL + ++M   K   PD VT+T I+ GL   G+++EA ++ ++ M + G  P   
Sbjct: 101 QCLEDALYMYDEMTV-KSLVPDVVTYTCIMNGLCKSGKVEEAKSV-FREMEEVGVVPNRF 158

Query: 353 TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI 412
           +Y  ++  LF+   V EA  +   M+  G+  D   Y  ++DGL ++   + A+  +  +
Sbjct: 159 SYATLIDSLFKEGNVAEAFVLQGRMVVRGIGFDVVVYTALMDGLFKAGMANNAEDMFQVL 218

Query: 413 VWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMK 472
           +  S + +   Y+A+I G C+ G +++    L E+ +  + PN++ Y+ ++DG  K  + 
Sbjct: 219 LEESLVPNCVTYSALIDGHCKLGDVNKGELLLQEMEEKHIFPNVIVYSSIVDGYTKKGLL 278

Query: 473 REAYQILREMRKNGLNPDAVTWRIL 497
            EA  ++R+M +  + P+   +  L
Sbjct: 279 NEAMDVMRKMVQRNILPNVFVYGTL 303



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 116/225 (51%), Gaps = 2/225 (0%)

Query: 282 LNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQV 341
            N +I+G+C+ G I  A+++L  M   +  APD VT+ T++ G   +G +  A  L+ ++
Sbjct: 20  FNVLIDGYCRNGEISRAVELLEGMKT-EGPAPDIVTYNTLMNGFCKIGDLFTAKKLMGEI 78

Query: 342 MPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ 401
                  P ++TY  ++    + + +E+A  +++ M    +V D  TY  +++GLC+S +
Sbjct: 79  -SLVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGLCKSGK 137

Query: 402 LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNV 461
           ++EAK  + ++     + + + YA +I  L + G + EA      +V  G+  ++V Y  
Sbjct: 138 VEEAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRGIGFDVVVYTA 197

Query: 462 VIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           ++DG  K  M   A  + + + +  L P+ VT+  L   H   G+
Sbjct: 198 LMDGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGD 242



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 115/253 (45%), Gaps = 17/253 (6%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +   C L  +  A  +F DM  +G + ++++Y  LIHGYC +  +  A+ V  +M   GV
Sbjct: 548 ISTFCRLGMIRRATLVFKDMMGKGILADIITYNALIHGYCISSHLKKAFAVHSQMLTEGV 607

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN  TY++L+ G+   R ++ A  L+ ++ ER      L  N   +  LV    + G +
Sbjct: 608 SPNVETYNILLGGLSAARLIKEAAGLVNQMKER-----GLVPNATTYDILVSGHGKIGNM 662

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E  ++  +M     V +      +I    +  +   A  ++  M+ RG+ P+  +Y+ +
Sbjct: 663 KECVKLYCEMITKGFVPKTRTYNVLISCFAKGKKMSQAKELMQEMQVRGIPPNSSTYDIL 722

Query: 181 VHGLCK-------HGGCMRAYQ-----LLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKA 228
           + G  K       +    R+YQ     L EE  + G++P E+T   +   L        A
Sbjct: 723 ICGWYKLSKQPELNKSLKRSYQAEAKRLFEEMNEKGFIPCENTLACISFTLAKPGKKADA 782

Query: 229 RKVLQFMLSKKDV 241
           +++L  +  KK V
Sbjct: 783 QRILNKLYKKKTV 795



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 79/162 (48%), Gaps = 13/162 (8%)

Query: 4   LCGLSRVG---EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           + G  ++G   E  KL+ +M ++G VP   +Y  LI  + +  +M  A ++  EM+  G+
Sbjct: 653 VSGHGKIGNMKECVKLYCEMITKGFVPKTRTYNVLISCFAKGKKMSQAKELMQEMQVRGI 712

Query: 61  LPNSLTYSVLVRGVLR-------TRDVERA-NVLMFKLWERMKEEEDLSVNNAAFANLVD 112
            PNS TY +L+ G  +        + ++R+      +L+E M E+  +   N   A +  
Sbjct: 713 PPNSSTYDILICGWYKLSKQPELNKSLKRSYQAEAKRLFEEMNEKGFIPCEN-TLACISF 771

Query: 113 SLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGR 154
           +L + G   +  RI   + + K+V E  A G + +S  R G+
Sbjct: 772 TLAKPGKKADAQRILNKLYKKKTVQELLA-GVLWESRERKGK 812


>gi|147742764|gb|ABQ50546.1| hypothetical protein [Brassica rapa]
          Length = 650

 Score =  191 bits (485), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 134/489 (27%), Positives = 242/489 (49%), Gaps = 10/489 (2%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M+ +G   ++ +   +I+ +CR  ++  A+    ++   G  PN++T++ L+ G+     
Sbjct: 116 MELKGIAYDLYTLNIMINCFCRRRKLGFAFSAMGKIFKLGYEPNTVTFNTLLNGLCLEGR 175

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE-VFRIAEDMPQGKSVNE 138
           V  A  L+  +       + +++N      +V+ LC +  V+E V  IA  M  G   N+
Sbjct: 176 VFEAVELVDCMVLSQHVPDLITLNT-----IVNGLCLKDRVSEAVDLIARMMANGCQPNQ 230

Query: 139 EFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLE 198
            F  G +++ +C+SG    A  ++  M  R + P +V+Y  I+  LCK G    A     
Sbjct: 231 -FTYGPILNRMCKSGNTASALDLLRKMEHRKIKPHVVTYTIIIDNLCKDGRLDDALSFFS 289

Query: 199 EGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIK 258
           E    G   +  TY  L+   C     +   ++L+ M+++K        +  + +L    
Sbjct: 290 EMETKGIKANVFTYNSLIGSFCSFGRWDDGAQLLRDMITRKITPNVVTFSALIDSLVKEG 349

Query: 259 NPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTF 318
             TE  ++   M+    +P+ IT N++I G C   R++EA +++ D++  K C PD  T+
Sbjct: 350 KLTEAKDLYNEMITRGIEPNTITYNSLIYGLCNDKRLDEANQMM-DLMVSKGCDPDIWTY 408

Query: 319 TTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCML 378
             +I G     ++ + + L ++ M  RG     VTY+ +++G  + R++  AK+VF  M+
Sbjct: 409 NILINGFCKAKQVDDGMRL-FRKMSLRGMIADTVTYSTLIQGFCQSRKLIVAKKVFQEMV 467

Query: 379 GIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIH 438
             GV     TYAI++DGLC++ +L+EA    D +       D  +Y  +I G+C + K+ 
Sbjct: 468 SQGVHPGIMTYAILLDGLCDNGELEEALGILDQMHKCKMELDIGIYNIIIHGMCNANKVD 527

Query: 439 EAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILD 498
           +A      L   GV  +I  YN+++ G CK S   EA  + R+M+++G  PD  T+  L 
Sbjct: 528 DAWSLFCSLPSKGVKRDIQSYNIMLSGLCKRSSLSEADALFRKMKEDGYEPDGCTYNTLI 587

Query: 499 KLHGNRGND 507
           + H  RGND
Sbjct: 588 RAHL-RGND 595



 Score =  188 bits (477), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 130/491 (26%), Positives = 222/491 (45%), Gaps = 44/491 (8%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           +A  LF  M     +P V+ +  L     RT + D+   +  +M   G+  +  T ++++
Sbjct: 73  DAVALFQSMLRSRPLPTVIDFNRLFGLLARTKQYDLVLALCKQMELKGIAYDLYTLNIMI 132

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP 131
               R R +  A   M K+++   E      N   F  L++ LC EG V E   + + M 
Sbjct: 133 NCFCRRRKLGFAFSAMGKIFKLGYEP-----NTVTFNTLLNGLCLEGRVFEAVELVDCMV 187

Query: 132 QGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCM 191
             + V +      +++ LC   R   A  ++  M   G  P+  +Y  I++ +CK G   
Sbjct: 188 LSQHVPDLITLNTIVNGLCLKDRVSEAVDLIARMMANGCQPNQFTYGPILNRMCKSGNTA 247

Query: 192 RAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYL 251
            A  LL +       P   TY ++++ LC +  L+ A      M +K             
Sbjct: 248 SALDLLRKMEHRKIKPHVVTYTIIIDNLCKDGRLDDALSFFSEMETKG------------ 295

Query: 252 RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC 311
                                   + +V T N++I  FC  GR ++  ++L DM+  K  
Sbjct: 296 -----------------------IKANVFTYNSLIGSFCSFGRWDDGAQLLRDMITRKI- 331

Query: 312 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK 371
            P+ VTF+ +I  L+  G++ EA +L Y  M  RG  P  +TYN+++ GL   +R++EA 
Sbjct: 332 TPNVVTFSALIDSLVKEGKLTEAKDL-YNEMITRGIEPNTITYNSLIYGLCNDKRLDEAN 390

Query: 372 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 431
           ++ + M+  G   D  TY I+I+G C++ Q+D+  R +  +     I D   Y+ +I+G 
Sbjct: 391 QMMDLMVSKGCDPDIWTYNILINGFCKAKQVDDGMRLFRKMSLRGMIADTVTYSTLIQGF 450

Query: 432 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 491
           C+S K+  A     E+V  GV P I+ Y +++DG C      EA  IL +M K  +  D 
Sbjct: 451 CQSRKLIVAKKVFQEMVSQGVHPGIMTYAILLDGLCDNGELEEALGILDQMHKCKMELDI 510

Query: 492 VTWRILDKLHG 502
             + I+  +HG
Sbjct: 511 GIYNII--IHG 519



 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 126/497 (25%), Positives = 230/497 (46%), Gaps = 42/497 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   RV EA +L   M    HVP++++  T+++G C    +  A  +   M   G 
Sbjct: 167 LNGLCLEGRVFEAVELVDCMVLSQHVPDLITLNTIVNGLCLKDRVSEAVDLIARMMANGC 226

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN  TY  ++  + ++ +   A  L+ K+     E   +  +   +  ++D+LC++G +
Sbjct: 227 QPNQFTYGPILNRMCKSGNTASALDLLRKM-----EHRKIKPHVVTYTIIIDNLCKDGRL 281

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           ++      +M         F    +I S C  GR    ++++  M  R +TP++V+++++
Sbjct: 282 DDALSFFSEMETKGIKANVFTYNSLIGSFCSFGRWDDGAQLLRDMITRKITPNVVTFSAL 341

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +  L K G    A  L  E I  G  P+  TY  L+ GLC +  L++A +++  M+SK  
Sbjct: 342 IDSLVKEGKLTEAKDLYNEMITRGIEPNTITYNSLIYGLCNDKRLDEANQMMDLMVSKG- 400

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                             C PD+ T N +INGFCK  ++++ ++
Sbjct: 401 ----------------------------------CDPDIWTYNILINGFCKAKQVDDGMR 426

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +   M      A D VT++T+I G     ++  A  + +Q M  +G  PGI+TY  +L G
Sbjct: 427 LFRKMSLRGMIA-DTVTYSTLIQGFCQSRKLIVAKKV-FQEMVSQGVHPGIMTYAILLDG 484

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L     +EEA  + + M    +  D   Y I+I G+C +N++D+A   +  +       D
Sbjct: 485 LCDNGELEEALGILDQMHKCKMELDIGIYNIIIHGMCNANKVDDAWSLFCSLPSKGVKRD 544

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              Y  M+ GLC+   + EA     ++ + G  P+   YN +I    + +    + Q++ 
Sbjct: 545 IQSYNIMLSGLCKRSSLSEADALFRKMKEDGYEPDGCTYNTLIRAHLRGNDITTSVQLIE 604

Query: 481 EMRKNGLNPDAVTWRIL 497
           EM++ G + DA T +I+
Sbjct: 605 EMKRCGFSSDASTVKIV 621



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 103/405 (25%), Positives = 182/405 (44%), Gaps = 8/405 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++++C       A  L   M+ R   P+VV+YT +I   C+ G +D A   F EM   G+
Sbjct: 237 LNRMCKSGNTASALDLLRKMEHRKIKPHVVTYTIIIDNLCKDGRLDDALSFFSEMETKGI 296

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             N  TY+ L+         +    L+  +  R      ++ N   F+ L+DSL +EG +
Sbjct: 297 KANVFTYNSLIGSFCSFGRWDDGAQLLRDMITR-----KITPNVVTFSALIDSLVKEGKL 351

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E   +  +M              +I  LC   R   A++++ +M  +G  P + +YN +
Sbjct: 352 TEAKDLYNEMITRGIEPNTITYNSLIYGLCNDKRLDEANQMMDLMVSKGCDPDIWTYNIL 411

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++G CK        +L  +    G +    TY  L++G C    L  A+KV Q M+S+  
Sbjct: 412 INGFCKAKQVDDGMRLFRKMSLRGMIADTVTYSTLIQGFCQSRKLIVAKKVFQEMVSQGV 471

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                   I L  LC      E L +L  M + + + D+   N +I+G C   ++++A  
Sbjct: 472 HPGIMTYAILLDGLCDNGELEEALGILDQMHKCKMELDIGIYNIIIHGMCNANKVDDAWS 531

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +   +   K    D  ++  ++ GL     + EA + L++ M + GY P   TYN ++R 
Sbjct: 532 LFCSL-PSKGVKRDIQSYNIMLSGLCKRSSLSEA-DALFRKMKEDGYEPDGCTYNTLIRA 589

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA 405
             R   +  + ++   M   G  +D++T  IV+D L  S +LD++
Sbjct: 590 HLRGNDITTSVQLIEEMKRCGFSSDASTVKIVMDML-SSGELDKS 633


>gi|242045792|ref|XP_002460767.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
 gi|241924144|gb|EER97288.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
          Length = 762

 Score =  191 bits (485), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 140/495 (28%), Positives = 227/495 (45%), Gaps = 47/495 (9%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LCG  RV +A +LF +M S    P+VV+Y  LIHGYC  GE++ A K+ D+M   GV PN
Sbjct: 272 LCGAGRVEDARQLFDEMAS---PPDVVTYGILIHGYCALGELENAVKLLDDMVARGVEPN 328

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           +  Y+ +V  +     V  A      + E M   + + ++ A +  ++   C +G +   
Sbjct: 329 ATVYTSVVALLCDKGRVSDA----LTVVEDMVHHK-VILDEAVYTTVLSGFCNKGDLVSA 383

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            R  ++M +     +      +I+ LCR+G    A +V+  M  R L    V+Y  +V G
Sbjct: 384 RRWFDEMQRKGLATDGVTYTTLINGLCRAGELKEAEKVLQEMLARRLDVDEVTYTVLVDG 443

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK G    A+Q+    +Q G  P+  TY  L +GLC + D++ A ++L  M +K     
Sbjct: 444 YCKRGKMAEAFQVHNTMVQRGVAPNVVTYTALSDGLCKQGDVQAANELLHEMSNKG---- 499

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                                           + +  T N++ING CK G +++A++ + 
Sbjct: 500 -------------------------------LELNACTYNSLINGLCKAGYLDQAMRTMA 528

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           DM A     PD  T+TT+I  L   G +  A +LL Q M   G  P IVTYN ++ G   
Sbjct: 529 DMDAAGL-KPDVYTYTTLIDALCKSGELDRAHDLL-QEMLDNGIKPTIVTYNVLMNGFCM 586

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
             RVE  K++   ML   +  ++TTY  ++   C  N +      +  +   +   +   
Sbjct: 587 SGRVEGGKKLLEWMLEKNIHPNATTYNSLMKQYCIGNNMKSTTEIYKGMCSRNVEPNENT 646

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y  +IKG C++  + EA +F  E+++ G       Y+ +I    K     EA ++  +MR
Sbjct: 647 YNILIKGHCKARSMKEAQYFHNEMIEKGFRLTASSYSALIRLLNKKKKFVEARKLFHDMR 706

Query: 484 KNGLN--PDAVTWRI 496
           K G    PD   + I
Sbjct: 707 KEGFTAEPDVYNFYI 721



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 109/358 (30%), Positives = 186/358 (51%), Gaps = 11/358 (3%)

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
           ++  LC +GR   A ++   M      P +V+Y  ++HG C  G    A +LL++ +  G
Sbjct: 268 LLKVLCGAGRVEDARQLFDEMAS---PPDVVTYGILIHGYCALGELENAVKLLDDMVARG 324

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL 264
             P+   Y  +V  LC +  +  A  V++ M+  K +    +    L   C   N  +L+
Sbjct: 325 VEPNATVYTSVVALLCDKGRVSDALTVVEDMVHHKVILDEAVYTTVLSGFC---NKGDLV 381

Query: 265 NVLVFMLQTQCQ---PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTI 321
           +   +  + Q +    D +T  T+ING C+ G ++EA KVL +M+A +    D VT+T +
Sbjct: 382 SARRWFDEMQRKGLATDGVTYTTLINGLCRAGELKEAEKVLQEMLARRLDV-DEVTYTVL 440

Query: 322 IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG 381
           + G    G++ EA  + +  M QRG +P +VTY A+  GL +   V+ A E+ + M   G
Sbjct: 441 VDGYCKRGKMAEAFQV-HNTMVQRGVAPNVVTYTALSDGLCKQGDVQAANELLHEMSNKG 499

Query: 382 VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAV 441
           +  ++ TY  +I+GLC++  LD+A R   D+       D Y Y  +I  LC+SG++  A 
Sbjct: 500 LELNACTYNSLINGLCKAGYLDQAMRTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAH 559

Query: 442 HFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
             L E++D+G+ P IV YNV+++G C         ++L  M +  ++P+A T+  L K
Sbjct: 560 DLLQEMLDNGIKPTIVTYNVLMNGFCMSGRVEGGKKLLEWMLEKNIHPNATTYNSLMK 617



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 102/413 (24%), Positives = 197/413 (47%), Gaps = 7/413 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   RV +A  +  DM     + +   YTT++ G+C  G++  A + FDEM+  G+  +
Sbjct: 339 LCDKGRVSDALTVVEDMVHHKVILDEAVYTTVLSGFCNKGDLVSARRWFDEMQRKGLATD 398

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY+ L+ G+ R  +++ A  ++ ++  R      L V+   +  LVD  C+ G + E 
Sbjct: 399 GVTYTTLINGLCRAGELKEAEKVLQEMLARR-----LDVDEVTYTVLVDGYCKRGKMAEA 453

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           F++   M Q            + D LC+ G    A+ +++ M  +GL  +  +YNS+++G
Sbjct: 454 FQVHNTMVQRGVAPNVVTYTALSDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLING 513

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LCK G   +A + + +    G  P  +TY  L++ LC   +L++A  +LQ ML       
Sbjct: 514 LCKAGYLDQAMRTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEMLDNGIKPT 573

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               N+ +   C+         +L +ML+    P+  T N+++  +C    ++   ++  
Sbjct: 574 IVTYNVLMNGFCMSGRVEGGKKLLEWMLEKNIHPNATTYNSLMKQYCIGNNMKSTTEIYK 633

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            M + +   P+  T+  +I G      ++EA    +  M ++G+     +Y+A++R L +
Sbjct: 634 GMCS-RNVEPNENTYNILIKGHCKARSMKEA-QYFHNEMIEKGFRLTASSYSALIRLLNK 691

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416
            ++  EA+++F+ M   G  A+   Y   ID     + L+      D++V  S
Sbjct: 692 KKKFVEARKLFHDMRKEGFTAEPDVYNFYIDFNFNEDNLEATLALCDELVEAS 744



 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 108/403 (26%), Positives = 183/403 (45%), Gaps = 13/403 (3%)

Query: 103 NNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVV 162
           N  ++  L+  LC  G V +  ++ ++M     V      G +I   C  G    A +++
Sbjct: 261 NVCSYNILLKVLCGAGRVEDARQLFDEMASPPDV---VTYGILIHGYCALGELENAVKLL 317

Query: 163 YVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGE 222
             M  RG+ P+   Y S+V  LC  G    A  ++E+ +    +  E  Y  ++ G C +
Sbjct: 318 DDMVARGVEPNATVYTSVVALLCDKGRVSDALTVVEDMVHHKVILDEAVYTTVLSGFCNK 377

Query: 223 SDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITL 282
            DL  AR+    M  K            +  LC      E   VL  ML  +   D +T 
Sbjct: 378 GDLVSARRWFDEMQRKGLATDGVTYTTLINGLCRAGELKEAEKVLQEMLARRLDVDEVTY 437

Query: 283 NTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVM 342
             +++G+CK G++ EA +V N MV  +  AP+ VT+T +  GL   G +Q A  LL++ M
Sbjct: 438 TVLVDGYCKRGKMAEAFQVHNTMVQ-RGVAPNVVTYTALSDGLCKQGDVQAANELLHE-M 495

Query: 343 PQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQL 402
             +G      TYN+++ GL +   +++A      M   G+  D  TY  +ID LC+S +L
Sbjct: 496 SNKGLELNACTYNSLINGLCKAGYLDQAMRTMADMDAAGLKPDVYTYTTLIDALCKSGEL 555

Query: 403 DEA----KRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVC 458
           D A    +   D+ + P+ +     Y  ++ G C SG++      L  +++  + PN   
Sbjct: 556 DRAHDLLQEMLDNGIKPTIV----TYNVLMNGFCMSGRVEGGKKLLEWMLEKNIHPNATT 611

Query: 459 YNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLH 501
           YN ++   C  +  +   +I + M    + P+  T+ IL K H
Sbjct: 612 YNSLMKQYCIGNNMKSTTEIYKGMCSRNVEPNENTYNILIKGH 654



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 95/336 (28%), Positives = 166/336 (49%), Gaps = 19/336 (5%)

Query: 165 MRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQ-FGYLPSEH--TYKVLVEGLCG 221
           +R+ G++PS  + N+++  L            L+E I+ F  LP ++  +Y +L++ LCG
Sbjct: 226 VRQYGISPSPEACNAVLSRLP-----------LDEAIELFQGLPDKNVCSYNILLKVLCG 274

Query: 222 ESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVIT 281
              +E AR++   M S  DV       I +   C +      + +L  M+    +P+   
Sbjct: 275 AGRVEDARQLFDEMASPPDV---VTYGILIHGYCALGELENAVKLLDDMVARGVEPNATV 331

Query: 282 LNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQV 341
             +V+   C  GR+ +AL V+ DMV  K    +AV +TT++ G  N G +  A    +  
Sbjct: 332 YTSVVALLCDKGRVSDALTVVEDMVHHKVILDEAV-YTTVLSGFCNKGDLVSARRW-FDE 389

Query: 342 MPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ 401
           M ++G +   VTY  ++ GL R   ++EA++V   ML   +  D  TY +++DG C+  +
Sbjct: 390 MQRKGLATDGVTYTTLINGLCRAGELKEAEKVLQEMLARRLDVDEVTYTVLVDGYCKRGK 449

Query: 402 LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNV 461
           + EA +  + +V      +   Y A+  GLC+ G +  A   L+E+ + G+  N   YN 
Sbjct: 450 MAEAFQVHNTMVQRGVAPNVVTYTALSDGLCKQGDVQAANELLHEMSNKGLELNACTYNS 509

Query: 462 VIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           +I+G CK     +A + + +M   GL PD  T+  L
Sbjct: 510 LINGLCKAGYLDQAMRTMADMDAAGLKPDVYTYTTL 545



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 76/319 (23%), Positives = 137/319 (42%), Gaps = 41/319 (12%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C   ++ EA ++   M  RG  PNVV+YT L  G C+ G++  A ++  EM + G+
Sbjct: 441 VDGYCKRGKMAEAFQVHNTMVQRGVAPNVVTYTALSDGLCKQGDVQAANELLHEMSNKGL 500

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             N+ TY+ L+ G                                        LC+ GY+
Sbjct: 501 ELNACTYNSLING----------------------------------------LCKAGYL 520

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           ++  R   DM       + +    +ID+LC+SG    A  ++  M   G+ P++V+YN +
Sbjct: 521 DQAMRTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEMLDNGIKPTIVTYNVL 580

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++G C  G      +LLE  ++    P+  TY  L++  C  ++++   ++ + M S+  
Sbjct: 581 MNGFCMSGRVEGGKKLLEWMLEKNIHPNATTYNSLMKQYCIGNNMKSTTEIYKGMCSRNV 640

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                  NI ++  C  ++  E       M++   +    + + +I    K  +  EA K
Sbjct: 641 EPNENTYNILIKGHCKARSMKEAQYFHNEMIEKGFRLTASSYSALIRLLNKKKKFVEARK 700

Query: 301 VLNDMVAGKFCA-PDAVTF 318
           + +DM    F A PD   F
Sbjct: 701 LFHDMRKEGFTAEPDVYNF 719



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 104/211 (49%), Gaps = 9/211 (4%)

Query: 295 IEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTY 354
           ++EA+++   +     C     ++  ++  L   GR+++A     Q+  +    P +VTY
Sbjct: 247 LDEAIELFQGLPDKNVC-----SYNILLKVLCGAGRVEDA----RQLFDEMASPPDVVTY 297

Query: 355 NAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVW 414
             ++ G   L  +E A ++ + M+  GV  ++T Y  V+  LC+  ++ +A    +D+V 
Sbjct: 298 GILIHGYCALGELENAVKLLDDMVARGVEPNATVYTSVVALLCDKGRVSDALTVVEDMVH 357

Query: 415 PSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKRE 474
              I D  VY  ++ G C  G +  A  +  E+   G+  + V Y  +I+G C+    +E
Sbjct: 358 HKVILDEAVYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTLINGLCRAGELKE 417

Query: 475 AYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
           A ++L+EM    L+ D VT+ +L   +  RG
Sbjct: 418 AEKVLQEMLARRLDVDEVTYTVLVDGYCKRG 448


>gi|414881814|tpg|DAA58945.1| TPA: hypothetical protein ZEAMMB73_003881 [Zea mays]
          Length = 792

 Score =  191 bits (484), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 149/539 (27%), Positives = 251/539 (46%), Gaps = 44/539 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMK-SRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCG 59
           +D L  + R+ EA +L   M  + G   +VV  T L+HGYC  GE+  A  +FDE+   G
Sbjct: 262 VDVLVKVGRMDEALRLKDQMLLATGKKMDVVLATMLMHGYCLHGEVGKALDLFDEVVSDG 321

Query: 60  VLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGY 119
           V P ++TY VL++G     D E  +   +KL  +M E+  L ++   F  ++  L R+  
Sbjct: 322 VTPTNVTYGVLIKGC----DAEGMSDETYKLCRQMIEQ-GLLLSTYEFNLVIKGLLRDKR 376

Query: 120 VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
             +   + E +     V + F  G +I  LC+  + H A  +   M++ G+ PS+V+Y+S
Sbjct: 377 WKDAIGLLE-LVVDTGVPDVFTYGCLIHWLCKHQKLHEAVNLWDKMKEAGVKPSIVTYHS 435

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++ G C+ G    A +L  E    G+ P+E TY  L++G   +   + A  +L  M    
Sbjct: 436 LLLGYCEKGRMDEALKLYSEMPDKGFPPNEVTYTTLMKGYIKKKAFDNAYALLNEMRQNG 495

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                   NI +  L ++    E+  +L   L     P  +T N++INGF K G +  A 
Sbjct: 496 VSCGDYTYNILINGLYMVNRVCEVDEMLKRFLSEGFVPTTMTYNSIINGFVKAGMMGSAF 555

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNV------------------------------- 328
            +   M   K   P+ VT+T+ I G                                   
Sbjct: 556 GMYRQM-RKKGITPNIVTYTSFIDGYCRTNCCDLAVKLLIYVRRDGIQPDIAAYNAFIDT 614

Query: 329 ----GRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 384
               G +  AL+ L  ++ + G +P +  YN+ + G   L+ + EA + +  M+   VVA
Sbjct: 615 FCKQGNMSRALHFLVLLL-KDGLTPDVTVYNSFVTGYKNLKMMAEASKFYYSMIKQRVVA 673

Query: 385 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFL 444
           D+  Y  +IDG  +   +  A   + +++    I D+  + A+  GLCRSG I  A   L
Sbjct: 674 DTEIYTTLIDGFSKVGNVAFALELYSEMMANHVIPDDKTFTALTHGLCRSGDIDGAKRLL 733

Query: 445 YELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGN 503
            ++    V+PNIV YN++I+   +    +EA+Q+  EM  +G+ PD  T+ IL + + +
Sbjct: 734 DDMRRLDVSPNIVTYNMLINACVRDGKLQEAFQLHDEMLSSGVVPDDTTYDILPRTNNS 792



 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 133/490 (27%), Positives = 236/490 (48%), Gaps = 13/490 (2%)

Query: 8   SRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTY 67
           +   +A  LF +M+ +G   +   Y  +I    R G    A ++FDEM   GV P+   Y
Sbjct: 164 ASAADALTLFDEMRGKGCYADAKMYDVVIRACVRGGMHCDAVRLFDEMAGAGVKPDERVY 223

Query: 68  SVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIA 127
           ++ + G+ + RD +RA  ++ K+ E   E  +L+     ++++VD L + G ++E  R+ 
Sbjct: 224 AITISGLCKLRDADRALQVLGKMREAGFEPWELT-----YSSVVDVLVKVGRMDEALRLK 278

Query: 128 EDM--PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLC 185
           + M    GK ++   A   ++   C  G    A  +   +   G+TP+ V+Y  ++ G  
Sbjct: 279 DQMLLATGKKMDVVLAT-MLMHGYCLHGEVGKALDLFDEVVSDGVTPTNVTYGVLIKGCD 337

Query: 186 KHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR-T 244
             G     Y+L  + I+ G L S + + ++++GL  +   + A  +L+ ++     D  T
Sbjct: 338 AEGMSDETYKLCRQMIEQGLLLSTYEFNLVIKGLLRDKRWKDAIGLLELVVDTGVPDVFT 397

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
             C I+   LC  +   E +N+   M +   +P ++T ++++ G+C+ GR++EALK+ ++
Sbjct: 398 YGCLIHW--LCKHQKLHEAVNLWDKMKEAGVKPSIVTYHSLLLGYCEKGRMDEALKLYSE 455

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
           M    F  P+ VT+TT++ G +       A  LL + M Q G S G  TYN ++ GL+ +
Sbjct: 456 MPDKGF-PPNEVTYTTLMKGYIKKKAFDNAYALLNE-MRQNGVSCGDYTYNILINGLYMV 513

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY 424
            RV E  E+    L  G V  + TY  +I+G  ++  +  A   +  +       +   Y
Sbjct: 514 NRVCEVDEMLKRFLSEGFVPTTMTYNSIINGFVKAGMMGSAFGMYRQMRKKGITPNIVTY 573

Query: 425 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484
            + I G CR+     AV  L  +   G+ P+I  YN  ID  CK      A   L  + K
Sbjct: 574 TSFIDGYCRTNCCDLAVKLLIYVRRDGIQPDIAAYNAFIDTFCKQGNMSRALHFLVLLLK 633

Query: 485 NGLNPDAVTW 494
           +GL PD   +
Sbjct: 634 DGLTPDVTVY 643



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 89/215 (41%), Gaps = 8/215 (3%)

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLN-VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           VL+ + AG   +P AVT  + +   L+       A    Y  M  RG  P   +   +L 
Sbjct: 102 VLSTVDAG---SPAAVTLLSHVLTCLSRAASDCAAAAAAYSRMVTRGVVPDAKSRTDLLV 158

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
              R     +A  +F+ M G G  AD+  Y +VI          +A R +D++       
Sbjct: 159 TTARGASAADALTLFDEMRGKGCYADAKMYDVVIRACVRGGMHCDAVRLFDEMAGAGVKP 218

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           D  VYA  I GLC+      A+  L ++ ++G  P  + Y+ V+D   K+    EA ++ 
Sbjct: 219 DERVYAITISGLCKLRDADRALQVLGKMREAGFEPWELTYSSVVDVLVKVGRMDEALRLK 278

Query: 480 REM-RKNGLNPDAVTWRILDK---LHGNRGNDFGL 510
            +M    G   D V   +L     LHG  G    L
Sbjct: 279 DQMLLATGKKMDVVLATMLMHGYCLHGEVGKALDL 313


>gi|359473479|ref|XP_002267299.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g13630-like [Vitis
           vinifera]
          Length = 829

 Score =  191 bits (484), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 130/488 (26%), Positives = 229/488 (46%), Gaps = 9/488 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M   C +  V  A   F  M   G +P+V SY  L+HG C  G M+ A +  ++M + GV
Sbjct: 277 MSGFCKMGSVDVAKSFFCMMIKYGLLPDVYSYNILLHGLCVAGSMEEALEFTNDMENHGV 336

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TY++L  G      +  A    +K+ +RM     L+ +   +  L+   C+ G +
Sbjct: 337 EPDIVTYNILANGFRILGLISGA----WKVVQRMLLN-GLNPDLVTYTILICGHCQMGNI 391

Query: 121 NEVFRIAEDM-PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
            E F++ E M  QG  ++       ++ SLC+SGR   A  +++ M   GL P L++Y+ 
Sbjct: 392 EESFKLKEKMLSQGLKLSI-VTYTVLLSSLCKSGRIDEAVILLHEMEVIGLKPDLLTYSV 450

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++HGLCK G    A +L EE       P+      ++ GL  +  + +A+     +    
Sbjct: 451 LIHGLCKRGAVEEAIELYEEMCSKRIYPNSFVCSAIISGLFEKGAISEAQMYFDSVTKSD 510

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
             +   + NI +     + N  E +     +++    P ++T N++I GFCK G++ EA+
Sbjct: 511 VAEEIILYNIMIDGYAKLGNIGEAVRSYKQIIEKGISPTIVTFNSLIYGFCKKGKLAEAV 570

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           K+L D +      P +VT+TT++ G    G +    ++L++ M  +   P  +TY  V++
Sbjct: 571 KLL-DTIKVHGLVPTSVTYTTLMNGYCEEGDMHSMFDMLHE-MEAKAIKPTQITYTVVVK 628

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
           GL +  R+ E+ ++   M   G+  D  TY  VI   C+++ L +A +  + ++  S   
Sbjct: 629 GLCKEGRLHESVQLLKYMYARGLFPDQITYNTVIQSFCKAHDLQKAFQLHNQMLQHSLQP 688

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
               Y  +I GLC  G + +A   L  L D  +    V Y  +I   C     + A    
Sbjct: 689 SPVTYNVLINGLCVYGNLKDADRLLVTLQDQSIRLTKVAYTTIIKAHCAKGDVQNALVFF 748

Query: 480 REMRKNGL 487
            +M + G 
Sbjct: 749 HQMVERGF 756



 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 141/556 (25%), Positives = 249/556 (44%), Gaps = 69/556 (12%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC  SR+ +A     +       P+VVS+  L+ G+C+ G +DVA   F  M   G+
Sbjct: 242 IDGLCRQSRLQDAVTFLRETGGEEFGPSVVSFNALMSGFCKMGSVDVAKSFFCMMIKYGL 301

Query: 61  LPNSLTYSVLVRGVLRTRDVERA-------------------NVL------------MFK 89
           LP+  +Y++L+ G+     +E A                   N+L             +K
Sbjct: 302 LPDVYSYNILLHGLCVAGSMEEALEFTNDMENHGVEPDIVTYNILANGFRILGLISGAWK 361

Query: 90  LWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDM-PQGKSVNEEFACGHMIDS 148
           + +RM     L+ +   +  L+   C+ G + E F++ E M  QG  ++       ++ S
Sbjct: 362 VVQRML-LNGLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQGLKLS-IVTYTVLLSS 419

Query: 149 LCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPS 208
           LC+SGR   A  +++ M   GL P L++Y+ ++HGLCK G    A +L EE       P+
Sbjct: 420 LCKSGRIDEAVILLHEMEVIGLKPDLLTYSVLIHGLCKRGAVEEAIELYEEMCSKRIYPN 479

Query: 209 EHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLV 268
                 ++ GL  +  + +A+     +      +   + NI +     + N  E +    
Sbjct: 480 SFVCSAIISGLFEKGAISEAQMYFDSVTKSDVAEEIILYNIMIDGYAKLGNIGEAVRSYK 539

Query: 269 FMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN------------------------- 303
            +++    P ++T N++I GFCK G++ EA+K+L+                         
Sbjct: 540 QIIEKGISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLMNGYCEEG 599

Query: 304 ------DMV---AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTY 354
                 DM+     K   P  +T+T ++ GL   GR+ E++ LL + M  RG  P  +TY
Sbjct: 600 DMHSMFDMLHEMEAKAIKPTQITYTVVVKGLCKEGRLHESVQLL-KYMYARGLFPDQITY 658

Query: 355 NAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVW 414
           N V++   +   +++A ++ N ML   +     TY ++I+GLC    L +A R    +  
Sbjct: 659 NTVIQSFCKAHDLQKAFQLHNQMLQHSLQPSPVTYNVLINGLCVYGNLKDADRLLVTLQD 718

Query: 415 PSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKRE 474
            S       Y  +IK  C  G +  A+ F +++V+ G   +I  Y+ VI+  CK ++  +
Sbjct: 719 QSIRLTKVAYTTIIKAHCAKGDVQNALVFFHQMVERGFEVSIRDYSAVINRLCKRNLITD 778

Query: 475 AYQILREMRKNGLNPD 490
           A      M  +G+ PD
Sbjct: 779 AKFFFCMMLTHGIPPD 794



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 131/534 (24%), Positives = 244/534 (45%), Gaps = 54/534 (10%)

Query: 5   CGLSRVGEAHKLFF---DMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVL 61
           C  SR    H   F    MK      ++ +Y +L++    T   D+ + V++E++  GV 
Sbjct: 176 CAYSRAEMVHDALFVLAKMKVLNLQVSIATYNSLLYNLRHT---DIMWDVYNEIKASGVP 232

Query: 62  PNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVN 121
            N  T  +L+ G+ R   ++ A   +     R    E+   +  +F  L+   C+ G V+
Sbjct: 233 QNEYTNPILIDGLCRQSRLQDAVTFL-----RETGGEEFGPSVVSFNALMSGFCKMGSVD 287

Query: 122 EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
                   M +   + + ++   ++  LC +G    A      M   G+ P +V+YN + 
Sbjct: 288 VAKSFFCMMIKYGLLPDVYSYNILLHGLCVAGSMEEALEFTNDMENHGVEPDIVTYNILA 347

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
           +G    G    A+++++  +  G  P   TY +L+ G C   ++E++ K+ + MLS+   
Sbjct: 348 NGFRILGLISGAWKVVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQGLK 407

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
                  + L +LC      E + +L  M     +PD++T + +I+G CK G +EEA+++
Sbjct: 408 LSIVTYTVLLSSLCKSGRIDEAVILLHEMEVIGLKPDLLTYSVLIHGLCKRGAVEEAIEL 467

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALN--------------LLYQVMP---- 343
             +M + +   P++   + II GL   G I EA                +LY +M     
Sbjct: 468 YEEMCSKRI-YPNSFVCSAIISGLFEKGAISEAQMYFDSVTKSDVAEEIILYNIMIDGYA 526

Query: 344 ----------------QRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADST 387
                           ++G SP IVT+N+++ G  +  ++ EA ++ + +   G+V  S 
Sbjct: 527 KLGNIGEAVRSYKQIIEKGISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIKVHGLVPTSV 586

Query: 388 TYAIVIDGLCESNQL----DEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
           TY  +++G CE   +    D         + P+ I     Y  ++KGLC+ G++HE+V  
Sbjct: 587 TYTTLMNGYCEEGDMHSMFDMLHEMEAKAIKPTQI----TYTVVVKGLCKEGRLHESVQL 642

Query: 444 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           L  +   G+ P+ + YN VI   CK    ++A+Q+  +M ++ L P  VT+ +L
Sbjct: 643 LKYMYARGLFPDQITYNTVIQSFCKAHDLQKAFQLHNQMLQHSLQPSPVTYNVL 696



 Score =  151 bits (381), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 114/430 (26%), Positives = 197/430 (45%), Gaps = 42/430 (9%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C +  + E+ KL   M S+G   ++V+YT L+   C++G +D A  +  EM   G+ P+ 
Sbjct: 386 CQMGNIEESFKLKEKMLSQGLKLSIVTYTVLLSSLCKSGRIDEAVILLHEMEVIGLKPDL 445

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           LTYSVL+ G+ +   VE A     +L+E M  +  +  N+   + ++  L  +G ++E  
Sbjct: 446 LTYSVLIHGLCKRGAVEEA----IELYEEMCSKR-IYPNSFVCSAIISGLFEKGAISEAQ 500

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
              + + +     E      MID   + G    A R    + ++G++P++V++NS+++G 
Sbjct: 501 MYFDSVTKSDVAEEIILYNIMIDGYAKLGNIGEAVRSYKQIIEKGISPTIVTFNSLIYGF 560

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
           CK G    A +LL+     G +P+  TY  L+ G C E D+     +L  M   K +  T
Sbjct: 561 CKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLMNGYCEEGDMHSMFDMLHEM-EAKAIKPT 619

Query: 245 RIC-NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
           +I   + ++ LC      E + +L +M      PD IT NTVI  FCK   +++A ++ N
Sbjct: 620 QITYTVVVKGLCKEGRLHESVQLLKYMYARGLFPDQITYNTVIQSFCKAHDLQKAFQLHN 679

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLL------------------------- 338
            M+      P  VT+  +I GL   G +++A  LL                         
Sbjct: 680 QMLQHSL-QPSPVTYNVLINGLCVYGNLKDADRLLVTLQDQSIRLTKVAYTTIIKAHCAK 738

Query: 339 ---------YQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTY 389
                    +  M +RG+   I  Y+AV+  L +   + +AK  F  ML  G+  D    
Sbjct: 739 GDVQNALVFFHQMVERGFEVSIRDYSAVINRLCKRNLITDAKFFFCMMLTHGIPPDQDIC 798

Query: 390 AIVIDGLCES 399
            ++++    S
Sbjct: 799 LVMLNAFHRS 808



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/274 (22%), Positives = 120/274 (43%), Gaps = 5/274 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C   ++ EA KL   +K  G VP  V+YTTL++GYC  G+M   + +  EM    + P 
Sbjct: 560 FCKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLMNGYCEEGDMHSMFDMLHEMEAKAIKPT 619

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY+V+V+G+ +   +  +  L+  ++ R      L  +   +  ++ S C+   + + 
Sbjct: 620 QITYTVVVKGLCKEGRLHESVQLLKYMYAR-----GLFPDQITYNTVIQSFCKAHDLQKA 674

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           F++   M Q            +I+ LC  G    A R++  ++ + +  + V+Y +I+  
Sbjct: 675 FQLHNQMLQHSLQPSPVTYNVLINGLCVYGNLKDADRLLVTLQDQSIRLTKVAYTTIIKA 734

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            C  G    A     + ++ G+  S   Y  ++  LC  + +  A+     ML+      
Sbjct: 735 HCAKGDVQNALVFFHQMVERGFEVSIRDYSAVINRLCKRNLITDAKFFFCMMLTHGIPPD 794

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQP 277
             IC + L A     +P  +  +   M++    P
Sbjct: 795 QDICLVMLNAFHRSGDPNSVFEIFAMMIKCGLLP 828



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 105/209 (50%), Gaps = 13/209 (6%)

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQV-MPQRGYSPGIVTYNAV 357
           +KVLN  V+         T+ ++++ L +   + +  N +    +PQ  Y+  I+     
Sbjct: 194 MKVLNLQVS-------IATYNSLLYNLRHTDIMWDVYNEIKASGVPQNEYTNPIL----- 241

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 417
           + GL R  R+++A        G        ++  ++ G C+   +D AK F+  ++    
Sbjct: 242 IDGLCRQSRLQDAVTFLRETGGEEFGPSVVSFNALMSGFCKMGSVDVAKSFFCMMIKYGL 301

Query: 418 IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQ 477
           + D Y Y  ++ GLC +G + EA+ F  ++ + GV P+IV YN++ +G   L +   A++
Sbjct: 302 LPDVYSYNILLHGLCVAGSMEEALEFTNDMENHGVEPDIVTYNILANGFRILGLISGAWK 361

Query: 478 ILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           +++ M  NGLNPD VT+ IL   H   GN
Sbjct: 362 VVQRMLLNGLNPDLVTYTILICGHCQMGN 390


>gi|357130476|ref|XP_003566874.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Brachypodium distachyon]
          Length = 810

 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 140/532 (26%), Positives = 247/532 (46%), Gaps = 43/532 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D L    R+ EA ++  +M+  G   +V+  TTL+ GYC   E+  A  +F E    G+
Sbjct: 269 VDVLVKTGRMEEALRVNDEMRDAGKKMDVIVATTLMRGYCLRQEVGNALNLFKETLKDGI 328

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P  + Y VL+RG  +    ++A    ++L  +M  +  L  +    + ++  L  +   
Sbjct: 329 VPTKVMYGVLIRGCDQVGMTQKA----YELCRQMTGQ-GLLPSTFELSLVLKGLLNDRRW 383

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +   + E+M     + + F   ++I   C++ +   A  +   M+K G+ PS+ +YNS+
Sbjct: 384 KDAVCLFEEMAD-SGLPDVFTYNNLIHWHCQAHKLREALNLFDRMKKAGVKPSINTYNSL 442

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G CK G    A +L  E    G+ P+  TY  L+ G   + D + A  +L  M     
Sbjct: 443 LMGYCKKGCMDEAVKLYSEMPMEGFKPNVVTYITLMRGYIAKKDFDNAYALLDEMKQNGV 502

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGF----------- 289
                  N+ +  +C++    E+  +L   +     P ++T N++INGF           
Sbjct: 503 SCNDYTYNVLINGICMVDRVCEVDGMLKSFMSEGFIPTMMTYNSIINGFVKAGMMGSAFT 562

Query: 290 ------------------------CKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 325
                                   C+ G  + ALK+LND V  +   PD V +  +I G 
Sbjct: 563 VYQQMREKGLPPNIITYTSFIDGYCRTGCSDMALKMLND-VRRRGLQPDIVAYNALINGF 621

Query: 326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 385
              G +  AL LL  ++ + G +P  V YN+++ G   L  ++E  + +  M+  G+VAD
Sbjct: 622 CQEGNMSHALQLLV-ILLKDGLAPNTVVYNSLITGYKNLNMMKEVSKFYESMIKGGIVAD 680

Query: 386 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY 445
           ++TY  +IDG  +   +  A   + +++    I D + + A+  GLCRSG I  A   L 
Sbjct: 681 TSTYTTLIDGFSKDGNVAFALELYSEMMAKGYIPDAFTFTALTHGLCRSGDIDGAKKLLE 740

Query: 446 ELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           E+    V PN+  YN++I+G  +    +EA+++  EM   G+ PD  T+ IL
Sbjct: 741 EMRRLDVRPNVFIYNMLINGYLRDCKLQEAFRLHDEMLNMGIQPDDTTYDIL 792



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 112/389 (28%), Positives = 191/389 (49%), Gaps = 7/389 (1%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C   ++ EA  LF  MK  G  P++ +Y +L+ GYC+ G MD A K++ EM   G  PN 
Sbjct: 412 CQAHKLREALNLFDRMKKAGVKPSINTYNSLLMGYCKKGCMDEAVKLYSEMPMEGFKPNV 471

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           +TY  L+RG +  +D + A    + L + MK+   +S N+  +  L++ +C    V EV 
Sbjct: 472 VTYITLMRGYIAKKDFDNA----YALLDEMKQN-GVSCNDYTYNVLINGICMVDRVCEVD 526

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
            + +       +        +I+   ++G    A  V   MR++GL P++++Y S + G 
Sbjct: 527 GMLKSFMSEGFIPTMMTYNSIINGFVKAGMMGSAFTVYQQMREKGLPPNIITYTSFIDGY 586

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
           C+ G    A ++L +  + G  P    Y  L+ G C E ++  A ++L  +L       T
Sbjct: 587 CRTGCSDMALKMLNDVRRRGLQPDIVAYNALINGFCQEGNMSHALQLLVILLKDGLAPNT 646

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
            + N  +     +    E+      M++     D  T  T+I+GF K G +  AL++ ++
Sbjct: 647 VVYNSLITGYKNLNMMKEVSKFYESMIKGGIVADTSTYTTLIDGFSKDGNVAFALELYSE 706

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
           M+A  +  PDA TFT +  GL   G I  A  LL + M +    P +  YN ++ G  R 
Sbjct: 707 MMAKGYI-PDAFTFTALTHGLCRSGDIDGAKKLLEE-MRRLDVRPNVFIYNMLINGYLRD 764

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVI 393
            +++EA  + + ML +G+  D TTY I++
Sbjct: 765 CKLQEAFRLHDEMLNMGIQPDDTTYDILV 793



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 123/494 (24%), Positives = 223/494 (45%), Gaps = 8/494 (1%)

Query: 13  AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVR 72
           A   +  M +RG VP++ S T L+    R      A  +F EMR  G   ++  +  L+ 
Sbjct: 141 ATDTYAHMVARGVVPDIKSRTDLLIRTARGSSAKDALALFMEMRGRGYRVDAWMFDALMS 200

Query: 73  GVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQ 132
             L+    E A     +L++ M   E +  +   +A  + +LC+ G      R+  +M +
Sbjct: 201 ACLKEGMHEDA----VRLFDEMPGAE-IDPDQRVYALAITALCKLGDGGRALRMLREMKE 255

Query: 133 GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMR 192
                 +F    M+D L ++GR   A RV   MR  G    ++   +++ G C       
Sbjct: 256 VGFDTCDFTYRTMVDVLVKTGRMEEALRVNDEMRDAGKKMDVIVATTLMRGYCLRQEVGN 315

Query: 193 AYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLR 252
           A  L +E ++ G +P++  Y VL+ G       +KA ++ + M  +  +  T   ++ L+
Sbjct: 316 ALNLFKETLKDGIVPTKVMYGVLIRGCDQVGMTQKAYELCRQMTGQGLLPSTFELSLVLK 375

Query: 253 ALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCA 312
            L   +   + + +   M  +   PDV T N +I+  C+  ++ EAL + + M       
Sbjct: 376 GLLNDRRWKDAVCLFEEMADSGL-PDVFTYNNLIHWHCQAHKLREALNLFDRMKKAGV-K 433

Query: 313 PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKE 372
           P   T+ +++ G    G + EA+ L Y  MP  G+ P +VTY  ++RG    +  + A  
Sbjct: 434 PSINTYNSLLMGYCKKGCMDEAVKL-YSEMPMEGFKPNVVTYITLMRGYIAKKDFDNAYA 492

Query: 373 VFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLC 432
           + + M   GV  +  TY ++I+G+C  +++ E        +    I     Y ++I G  
Sbjct: 493 LLDEMKQNGVSCNDYTYNVLINGICMVDRVCEVDGMLKSFMSEGFIPTMMTYNSIINGFV 552

Query: 433 RSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAV 492
           ++G +  A     ++ + G+ PNI+ Y   IDG C+      A ++L ++R+ GL PD V
Sbjct: 553 KAGMMGSAFTVYQQMREKGLPPNIITYTSFIDGYCRTGCSDMALKMLNDVRRRGLQPDIV 612

Query: 493 TWRILDKLHGNRGN 506
            +  L       GN
Sbjct: 613 AYNALINGFCQEGN 626



 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 128/534 (23%), Positives = 227/534 (42%), Gaps = 43/534 (8%)

Query: 8   SRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTY 67
           S   +A  LF +M+ RG+  +   +  L+    + G  + A ++FDEM    + P+   Y
Sbjct: 171 SSAKDALALFMEMRGRGYRVDAWMFDALMSACLKEGMHEDAVRLFDEMPGAEIDPDQRVY 230

Query: 68  SVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIA 127
           ++ +  + +  D  RA     ++   MKE       +  +  +VD L + G + E  R+ 
Sbjct: 231 ALAITALCKLGDGGRA----LRMLREMKEV-GFDTCDFTYRTMVDVLVKTGRMEEALRVN 285

Query: 128 EDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKH 187
           ++M       +      ++   C       A  +     K G+ P+ V Y  ++ G  + 
Sbjct: 286 DEMRDAGKKMDVIVATTLMRGYCLRQEVGNALNLFKETLKDGIVPTKVMYGVLIRGCDQV 345

Query: 188 GGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC 247
           G   +AY+L  +    G LPS     ++++GL  +   + A  + + M      D     
Sbjct: 346 GMTQKAYELCRQMTGQGLLPSTFELSLVLKGLLNDRRWKDAVCLFEEMADSGLPDVFTYN 405

Query: 248 NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA 307
           N+ +   C      E LN+   M +   +P + T N+++ G+CK G ++EA+K+ ++M  
Sbjct: 406 NL-IHWHCQAHKLREALNLFDRMKKAGVKPSINTYNSLLMGYCKKGCMDEAVKLYSEMPM 464

Query: 308 GKFCAPDAVTFTTIIFG-------------------------------LLN----VGRIQ 332
             F  P+ VT+ T++ G                               L+N    V R+ 
Sbjct: 465 EGF-KPNVVTYITLMRGYIAKKDFDNAYALLDEMKQNGVSCNDYTYNVLINGICMVDRVC 523

Query: 333 EALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIV 392
           E   +L   M + G+ P ++TYN+++ G  +   +  A  V+  M   G+  +  TY   
Sbjct: 524 EVDGMLKSFMSE-GFIPTMMTYNSIINGFVKAGMMGSAFTVYQQMREKGLPPNIITYTSF 582

Query: 393 IDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGV 452
           IDG C +   D A +  +D+       D   Y A+I G C+ G +  A+  L  L+  G+
Sbjct: 583 IDGYCRTGCSDMALKMLNDVRRRGLQPDIVAYNALINGFCQEGNMSHALQLLVILLKDGL 642

Query: 453 TPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
            PN V YN +I G   L+M +E  +    M K G+  D  T+  L       GN
Sbjct: 643 APNTVVYNSLITGYKNLNMMKEVSKFYESMIKGGIVADTSTYTTLIDGFSKDGN 696



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/319 (23%), Positives = 137/319 (42%), Gaps = 41/319 (12%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           +C + RV E   +     S G +P +++Y ++I+G+ + G M  A+ V+ +MR  G+ PN
Sbjct: 516 ICMVDRVCEVDGMLKSFMSEGFIPTMMTYNSIINGFVKAGMMGSAFTVYQQMREKGLPPN 575

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY+  + G  RT   + A + M     R   + D+   NA    L++  C+EG ++  
Sbjct: 576 IITYTSFIDGYCRTGCSDMA-LKMLNDVRRRGLQPDIVAYNA----LINGFCQEGNMSHA 630

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            ++   + +            +I            S+    M K G+     +Y +++ G
Sbjct: 631 LQLLVILLKDGLAPNTVVYNSLITGYKNLNMMKEVSKFYESMIKGGIVADTSTYTTLIDG 690

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
             K G    A +L  E +  GY+P   T+  L  GLC   D++ A+K+L+ M  + DV  
Sbjct: 691 FSKDGNVAFALELYSEMMAKGYIPDAFTFTALTHGLCRSGDIDGAKKLLEEM-RRLDV-- 747

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                                           +P+V   N +ING+ +  +++EA + L+
Sbjct: 748 --------------------------------RPNVFIYNMLINGYLRDCKLQEAFR-LH 774

Query: 304 DMVAGKFCAPDAVTFTTII 322
           D +      PD  T+  ++
Sbjct: 775 DEMLNMGIQPDDTTYDILV 793



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 115/245 (46%), Gaps = 30/245 (12%)

Query: 10  VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSV 69
           +G A  ++  M+ +G  PN+++YT+ I GYCRTG  D+A K+ +++R  G+ P+ + Y+ 
Sbjct: 557 MGSAFTVYQQMREKGLPPNIITYTSFIDGYCRTGCSDMALKMLNDVRRRGLQPDIVAYNA 616

Query: 70  LVRGVLRTRDVERANVLM---------------------FKLWERMKE---------EED 99
           L+ G  +  ++  A  L+                     +K    MKE         +  
Sbjct: 617 LINGFCQEGNMSHALQLLVILLKDGLAPNTVVYNSLITGYKNLNMMKEVSKFYESMIKGG 676

Query: 100 LSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGAS 159
           +  + + +  L+D   ++G V     +  +M     + + F    +   LCRSG   GA 
Sbjct: 677 IVADTSTYTTLIDGFSKDGNVAFALELYSEMMAKGYIPDAFTFTALTHGLCRSGDIDGAK 736

Query: 160 RVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGL 219
           +++  MR+  + P++  YN +++G  +      A++L +E +  G  P + TY +LV   
Sbjct: 737 KLLEEMRRLDVRPNVFIYNMLINGYLRDCKLQEAFRLHDEMLNMGIQPDDTTYDILVSKK 796

Query: 220 CGESD 224
             E+D
Sbjct: 797 FLEAD 801


>gi|296088470|emb|CBI37461.3| unnamed protein product [Vitis vinifera]
          Length = 822

 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 127/460 (27%), Positives = 236/460 (51%), Gaps = 17/460 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           MD    +  +G+A +++  M   G  PNVV+Y+ LI+G CR G +  A  VF ++   G+
Sbjct: 352 MDAYVRVGDLGKAIEVYTRMLKEGISPNVVTYSILINGLCRNGRVLEACGVFGQILKQGL 411

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ LTYS L+ G  ++ ++ R    ++ +  R     D+ V +     L++ L R+G +
Sbjct: 412 EPSVLTYSSLIDGFCKSENL-RDGFGLYGIMLRKGHVPDVVVCSM----LINGLSRQGMM 466

Query: 121 NEVFRIA-EDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           +E  R   + + +G ++N  +    +ID   R  R     ++  +M    + P +V+Y  
Sbjct: 467 DEALRFFFQAVKRGLTLNN-YLFNALIDGCFRLKRTRDGLKMYILMGMYKVIPDVVTYTV 525

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           +V GL + G    A  L  + ++ G+ P    Y  L++G C + D     ++ + M S  
Sbjct: 526 LVKGLAEQGRLDEALALFFQLLKKGFSPDHIIYCTLIDGFCKKRDPATGLQIFKLMQSNG 585

Query: 240 DVDRTRICNI----YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 295
                 I N+    + R  C ++N  ELL  ++   +   +PD++T NT+I G+C +   
Sbjct: 586 IFPDICIYNVLINMFFREGC-VENVLELLREII---KYGLEPDIVTYNTMICGYCSLKIF 641

Query: 296 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN 355
            +A+K+   +  G+   P+A+TFT +I      GR+ +A+ L++  M +RG  P I+TY+
Sbjct: 642 SKAIKLFEVLKCGR-TQPNAITFTILIDAYCKDGRMDDAM-LIFSSMLERGPEPNILTYS 699

Query: 356 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP 415
            ++ G F+    E A E++  MLG  V  +  +Y+I+IDGLC+   ++EA   +   +  
Sbjct: 700 CLIDGYFKTENTESAFELYEKMLGDRVSPNIVSYSILIDGLCKKGLMEEASLAFQCAIGR 759

Query: 416 SNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN 455
             + D   Y  +I+G C+ G++ EA+     ++ +G+ P+
Sbjct: 760 HLLPDVIAYGILIRGYCKVGRLAEAMMLYDHMLVNGIMPD 799



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 121/495 (24%), Positives = 240/495 (48%), Gaps = 9/495 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSR-GHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           LC  +++G A   FFDM  R G  PN+V+++TLI+ YC+   +D A+ +++ M   G++P
Sbjct: 250 LCMGNQIGVASD-FFDMMVRSGPSPNLVTFSTLINVYCKELRLDEAFSLYNLMIEKGIVP 308

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           + + YS+L+ G+ R   +E  N L       M     + ++   F++++D+  R G + +
Sbjct: 309 DLVIYSILINGLFRAGKLEEGNSLF-----SMALARGVKMDVVIFSSIMDAYVRVGDLGK 363

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
              +   M +            +I+ LCR+GR   A  V   + K+GL PS+++Y+S++ 
Sbjct: 364 AIEVYTRMLKEGISPNVVTYSILINGLCRNGRVLEACGVFGQILKQGLEPSVLTYSSLID 423

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           G CK       + L    ++ G++P      +L+ GL  +  +++A +     + +    
Sbjct: 424 GFCKSENLRDGFGLYGIMLRKGHVPDVVVCSMLINGLSRQGMMDEALRFFFQAVKRGLTL 483

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
              + N  +     +K   + L + + M   +  PDV+T   ++ G  + GR++EAL + 
Sbjct: 484 NNYLFNALIDGCFRLKRTRDGLKMYILMGMYKVIPDVVTYTVLVKGLAEQGRLDEALALF 543

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
             ++   F +PD + + T+I G          L  ++++M   G  P I  YN ++   F
Sbjct: 544 FQLLKKGF-SPDHIIYCTLIDGFCKKRDPATGLQ-IFKLMQSNGIFPDICIYNVLINMFF 601

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
           R   VE   E+   ++  G+  D  TY  +I G C      +A + ++ +       +  
Sbjct: 602 REGCVENVLELLREIIKYGLEPDIVTYNTMICGYCSLKIFSKAIKLFEVLKCGRTQPNAI 661

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
            +  +I   C+ G++ +A+     +++ G  PNI+ Y+ +IDG  K      A+++  +M
Sbjct: 662 TFTILIDAYCKDGRMDDAMLIFSSMLERGPEPNILTYSCLIDGYFKTENTESAFELYEKM 721

Query: 483 RKNGLNPDAVTWRIL 497
             + ++P+ V++ IL
Sbjct: 722 LGDRVSPNIVSYSIL 736



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 119/503 (23%), Positives = 231/503 (45%), Gaps = 16/503 (3%)

Query: 3   QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           Q   L  +GE H  F   ++ G  P+ V Y+ L+H YCR G +D A   F  M   GV  
Sbjct: 118 QFGNLEVLGEFHGSF---RNYGSNPSTV-YSFLLHCYCRNGMVDRAVDTFAWMSKMGVSI 173

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           +    S ++  ++   D +R +V++       +  E++      +  + +S  + G V +
Sbjct: 174 SHYAASEMLDLLI---DSDRIDVIL-------ENYEEMCKGLGVYEFVFNSFLKRGEVEK 223

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
                  + +   V +   C  ++  LC   +   AS    +M + G +P+LV+++++++
Sbjct: 224 GLNFHRALVERGLVPKIVDCNKILKGLCMGNQIGVASDFFDMMVRSGPSPNLVTFSTLIN 283

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
             CK      A+ L    I+ G +P    Y +L+ GL     LE+   +    L++    
Sbjct: 284 VYCKELRLDEAFSLYNLMIEKGIVPDLVIYSILINGLFRAGKLEEGNSLFSMALARGVKM 343

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
              I +  + A   + +  + + V   ML+    P+V+T + +ING C+ GR+ EA  V 
Sbjct: 344 DVVIFSSIMDAYVRVGDLGKAIEVYTRMLKEGISPNVVTYSILINGLCRNGRVLEACGVF 403

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
             ++      P  +T++++I G      +++   L Y +M ++G+ P +V  + ++ GL 
Sbjct: 404 GQILKQGL-EPSVLTYSSLIDGFCKSENLRDGFGL-YGIMLRKGHVPDVVVCSMLINGLS 461

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
           R   ++EA   F   +  G+  ++  +  +IDG     +  +  + +  +     I D  
Sbjct: 462 RQGMMDEALRFFFQAVKRGLTLNNYLFNALIDGCFRLKRTRDGLKMYILMGMYKVIPDVV 521

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
            Y  ++KGL   G++ EA+   ++L+  G +P+ + Y  +IDG CK        QI + M
Sbjct: 522 TYTVLVKGLAEQGRLDEALALFFQLLKKGFSPDHIIYCTLIDGFCKKRDPATGLQIFKLM 581

Query: 483 RKNGLNPDAVTWRILDKLHGNRG 505
           + NG+ PD   + +L  +    G
Sbjct: 582 QSNGIFPDICIYNVLINMFFREG 604



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 89/213 (41%), Gaps = 40/213 (18%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C L    +A KLF  +K     PN +++T LI  YC+ G MD A  +F  M   G  PN 
Sbjct: 636 CSLKIFSKAIKLFEVLKCGRTQPNAITFTILIDAYCKDGRMDDAMLIFSSMLERGPEPNI 695

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           LTYS L+ G  +T + E A    F+L+E+M  +  +S N  +++ L              
Sbjct: 696 LTYSCLIDGYFKTENTESA----FELYEKMLGDR-VSPNIVSYSIL-------------- 736

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
                                ID LC+ G    AS        R L P +++Y  ++ G 
Sbjct: 737 ---------------------IDGLCKKGLMEEASLAFQCAIGRHLLPDVIAYGILIRGY 775

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVE 217
           CK G    A  L +  +  G +P +   K L E
Sbjct: 776 CKVGRLAEAMMLYDHMLVNGIMPDDLLQKALAE 808



 Score = 43.9 bits (102), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 36/70 (51%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    + EA   F     R  +P+V++Y  LI GYC+ G +  A  ++D M   G+
Sbjct: 737 IDGLCKKGLMEEASLAFQCAIGRHLLPDVIAYGILIRGYCKVGRLAEAMMLYDHMLVNGI 796

Query: 61  LPNSLTYSVL 70
           +P+ L    L
Sbjct: 797 MPDDLLQKAL 806


>gi|297744958|emb|CBI38550.3| unnamed protein product [Vitis vinifera]
          Length = 795

 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 139/507 (27%), Positives = 242/507 (47%), Gaps = 10/507 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D L     V EA  L   M  RG   +VV YT L+ G  + G  + A  +F  +    +
Sbjct: 164 IDSLFKEGNVAEAFVLQGRMVVRGIGFDVVVYTALMDGLFKAGMANNAEDMFQVLLEESL 223

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +PN +TYS L+ G  +  DV +  +L+ ++     EE+ +  N   ++++VD   ++G +
Sbjct: 224 VPNCVTYSALIDGHCKLGDVNKGELLLQEM-----EEKHIFPNVIVYSSIVDGYTKKGLL 278

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           NE   +   M Q   +   F  G +ID   ++ +   A  +   M+ RGL  +    +S 
Sbjct: 279 NEAMDVMRKMVQRNILPNVFVYGTLIDGYFKADQRGIALDLFKEMKSRGLEENNFVIDSF 338

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           V+ L + G    A +L ++ +  G LP    Y  +++G         A  + Q M  K  
Sbjct: 339 VNNLKRSGRMEEADELFKDMMSRGLLPDRVNYTSMMDGFFKAGKESDAFNIAQEMTEKSS 398

Query: 241 VDRTRICNIYLRALC-LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                  N+ +  L  L K  +E  +    M Q    PD  T NT+IN +CK G +  AL
Sbjct: 399 GFDVVAYNVLINGLFKLGKYESESFHT--GMRQLGLAPDSATFNTMINAYCKEGNLGNAL 456

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           K+LN+M +     P+++T   ++  L   G I++ ++LL  ++   G+ P   T+ AVL 
Sbjct: 457 KLLNEMKSYGL-KPNSITCNILVQRLCAAGEIEKTMDLLNDMLVM-GFHPTPTTHKAVLD 514

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
              + RR +    + + ++G+GV  D +TY  +I   C    +  A   + D++    + 
Sbjct: 515 ASSKSRRADVILHMHDQLVGMGVKLDLSTYNTLISTFCRLGMIRRATLVFKDMMGKGILA 574

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           D   Y A+I G C S  + +A     +++  GV+PN+  YN+++ G     + +EA  ++
Sbjct: 575 DIITYNALIHGYCISSHLKKAFAVHSQMLTEGVSPNVETYNILLGGLSAARLIKEAAGLV 634

Query: 480 REMRKNGLNPDAVTWRILDKLHGNRGN 506
            +M++ GL P+A T+ IL   HG  GN
Sbjct: 635 NQMKERGLVPNATTYDILVSGHGKIGN 661



 Score =  177 bits (450), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 136/531 (25%), Positives = 249/531 (46%), Gaps = 45/531 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C L  V +   L  +M+ +   PNV+ Y++++ GY + G ++ A  V  +M    +
Sbjct: 234 IDGHCKLGDVNKGELLLQEMEEKHIFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQRNI 293

Query: 61  LPNSLTYSVLV--------RGV-------LRTRDVERANVLM------FKLWERMKEEED 99
           LPN   Y  L+        RG+       +++R +E  N ++       K   RM+E ++
Sbjct: 294 LPNVFVYGTLIDGYFKADQRGIALDLFKEMKSRGLEENNFVIDSFVNNLKRSGRMEEADE 353

Query: 100 LSVNNAA---------FANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC 150
           L  +  +         + +++D   + G  ++ F IA++M +  S  +  A   +I+ L 
Sbjct: 354 LFKDMMSRGLLPDRVNYTSMMDGFFKAGKESDAFNIAQEMTEKSSGFDVVAYNVLINGLF 413

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
           + G+    S     MR+ GL P   ++N++++  CK G    A +LL E   +G  P+  
Sbjct: 414 KLGKYESES-FHTGMRQLGLAPDSATFNTMINAYCKEGNLGNALKLLNEMKSYGLKPNSI 472

Query: 211 TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM 270
           T  +LV+ LC   ++EK   +L  ML              L A    +    +L++   +
Sbjct: 473 TCNILVQRLCAAGEIEKTMDLLNDMLVMGFHPTPTTHKAVLDASSKSRRADVILHMHDQL 532

Query: 271 LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR 330
           +    + D+ T NT+I+ FC++G I  A  V  DM+ GK    D +T+  +I G      
Sbjct: 533 VGMGVKLDLSTYNTLISTFCRLGMIRRATLVFKDMM-GKGILADIITYNALIHGYCISSH 591

Query: 331 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYA 390
           +++A  +  Q++ + G SP + TYN +L GL   R ++EA  + N M   G+V ++TTY 
Sbjct: 592 LKKAFAVHSQMLTE-GVSPNVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYD 650

Query: 391 IVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 450
           I++ G  +   + E  + + +++    +     Y  +I    +  K+ +A   + E+   
Sbjct: 651 ILVSGHGKIGNMKECVKLYCEMITKGFVPKTRTYNVLISCFAKGKKMSQAKELMQEMQVR 710

Query: 451 GVTPNIVCYNVVIDGACKL--------SMKR----EAYQILREMRKNGLNP 489
           G+ PN   Y+++I G  KL        S+KR    EA ++  EM + G  P
Sbjct: 711 GIPPNSSTYDILICGWYKLSKQPELNKSLKRSYQAEAKRLFEEMNEKGFIP 761



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 126/497 (25%), Positives = 233/497 (46%), Gaps = 43/497 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C    +  A +L   MK+ G  P++V+Y TL++G+C+ G++  A K+  E+    +
Sbjct: 24  IDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAKKLMGEISLVNL 83

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +TY+ L+    +++ +E A      +++ M   + L  +   +  +++ LC+ G V
Sbjct: 84  EPNVITYTTLIDAYCKSQCLEDA----LYMYDEMT-VKSLVPDVVTYTCIMNGLCKSGKV 138

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E   +  +M +   V   F+   +IDSL + G    A  +   M  RG+   +V Y ++
Sbjct: 139 EEAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRGIGFDVVVYTAL 198

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GL K G    A  + +  ++   +P+  TY  L++G C   D+ K   +LQ M  K  
Sbjct: 199 MDGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQEMEEKH- 257

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                      +F       P+VI  +++++G+ K G + EA+ 
Sbjct: 258 ---------------------------IF-------PNVIVYSSIVDGYTKKGLLNEAMD 283

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           V+  MV  +   P+   + T+I G     +   AL+ L++ M  RG        ++ +  
Sbjct: 284 VMRKMVQ-RNILPNVFVYGTLIDGYFKADQRGIALD-LFKEMKSRGLEENNFVIDSFVNN 341

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L R  R+EEA E+F  M+  G++ D   Y  ++DG  ++ +  +A     ++   S+  D
Sbjct: 342 LKRSGRMEEADELFKDMMSRGLLPDRVNYTSMMDGFFKAGKESDAFNIAQEMTEKSSGFD 401

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              Y  +I GL + GK +E+  F   +   G+ P+   +N +I+  CK      A ++L 
Sbjct: 402 VVAYNVLINGLFKLGK-YESESFHTGMRQLGLAPDSATFNTMINAYCKEGNLGNALKLLN 460

Query: 481 EMRKNGLNPDAVTWRIL 497
           EM+  GL P+++T  IL
Sbjct: 461 EMKSYGLKPNSITCNIL 477



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/343 (26%), Positives = 157/343 (45%), Gaps = 37/343 (10%)

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
           +ID  CR+G    A  ++  M+  G  P +V+YN++++G CK G    A +L+ E     
Sbjct: 23  LIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAKKLMGEISLVN 82

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL 264
             P+  TY  L++  C    LE A  +   M  K  V                       
Sbjct: 83  LEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLV----------------------- 119

Query: 265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 324
                       PDV+T   ++NG CK G++EEA  V  +M       P+  ++ T+I  
Sbjct: 120 ------------PDVVTYTCIMNGLCKSGKVEEAKSVFREMEEVG-VVPNRFSYATLIDS 166

Query: 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 384
           L   G + EA  +L   M  RG    +V Y A++ GLF+      A+++F  +L   +V 
Sbjct: 167 LFKEGNVAEAF-VLQGRMVVRGIGFDVVVYTALMDGLFKAGMANNAEDMFQVLLEESLVP 225

Query: 385 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFL 444
           +  TY+ +IDG C+   +++ +    ++       +  VY++++ G  + G ++EA+  +
Sbjct: 226 NCVTYSALIDGHCKLGDVNKGELLLQEMEEKHIFPNVIVYSSIVDGYTKKGLLNEAMDVM 285

Query: 445 YELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
            ++V   + PN+  Y  +IDG  K   +  A  + +EM+  GL
Sbjct: 286 RKMVQRNILPNVFVYGTLIDGYFKADQRGIALDLFKEMKSRGL 328



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 85/325 (26%), Positives = 158/325 (48%), Gaps = 37/325 (11%)

Query: 173 SLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVL 232
           S+  +N ++ G C++G   RA +LLE     G  P   TY  L+ G C   DL  A+K++
Sbjct: 16  SVEHFNVLIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAKKLM 75

Query: 233 QFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKM 292
                                         L+N+         +P+VIT  T+I+ +CK 
Sbjct: 76  --------------------------GEISLVNL---------EPNVITYTTLIDAYCKS 100

Query: 293 GRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIV 352
             +E+AL + ++M   K   PD VT+T I+ GL   G+++EA ++ ++ M + G  P   
Sbjct: 101 QCLEDALYMYDEMTV-KSLVPDVVTYTCIMNGLCKSGKVEEAKSV-FREMEEVGVVPNRF 158

Query: 353 TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI 412
           +Y  ++  LF+   V EA  +   M+  G+  D   Y  ++DGL ++   + A+  +  +
Sbjct: 159 SYATLIDSLFKEGNVAEAFVLQGRMVVRGIGFDVVVYTALMDGLFKAGMANNAEDMFQVL 218

Query: 413 VWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMK 472
           +  S + +   Y+A+I G C+ G +++    L E+ +  + PN++ Y+ ++DG  K  + 
Sbjct: 219 LEESLVPNCVTYSALIDGHCKLGDVNKGELLLQEMEEKHIFPNVIVYSSIVDGYTKKGLL 278

Query: 473 REAYQILREMRKNGLNPDAVTWRIL 497
            EA  ++R+M +  + P+   +  L
Sbjct: 279 NEAMDVMRKMVQRNILPNVFVYGTL 303



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 116/225 (51%), Gaps = 2/225 (0%)

Query: 282 LNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQV 341
            N +I+G+C+ G I  A+++L  M   +  APD VT+ T++ G   +G +  A  L+ ++
Sbjct: 20  FNVLIDGYCRNGEISRAVELLEGMKT-EGPAPDIVTYNTLMNGFCKIGDLFTAKKLMGEI 78

Query: 342 MPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ 401
                  P ++TY  ++    + + +E+A  +++ M    +V D  TY  +++GLC+S +
Sbjct: 79  -SLVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGLCKSGK 137

Query: 402 LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNV 461
           ++EAK  + ++     + + + YA +I  L + G + EA      +V  G+  ++V Y  
Sbjct: 138 VEEAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRGIGFDVVVYTA 197

Query: 462 VIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           ++DG  K  M   A  + + + +  L P+ VT+  L   H   G+
Sbjct: 198 LMDGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGD 242



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 114/251 (45%), Gaps = 17/251 (6%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +   C L  +  A  +F DM  +G + ++++Y  LIHGYC +  +  A+ V  +M   GV
Sbjct: 548 ISTFCRLGMIRRATLVFKDMMGKGILADIITYNALIHGYCISSHLKKAFAVHSQMLTEGV 607

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN  TY++L+ G+   R ++ A  L+ ++ ER      L  N   +  LV    + G +
Sbjct: 608 SPNVETYNILLGGLSAARLIKEAAGLVNQMKER-----GLVPNATTYDILVSGHGKIGNM 662

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E  ++  +M     V +      +I    +  +   A  ++  M+ RG+ P+  +Y+ +
Sbjct: 663 KECVKLYCEMITKGFVPKTRTYNVLISCFAKGKKMSQAKELMQEMQVRGIPPNSSTYDIL 722

Query: 181 VHGLCK-------HGGCMRAYQ-----LLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKA 228
           + G  K       +    R+YQ     L EE  + G++P E+T   +   L        A
Sbjct: 723 ICGWYKLSKQPELNKSLKRSYQAEAKRLFEEMNEKGFIPCENTLACISFTLAKPGKKADA 782

Query: 229 RKVLQFMLSKK 239
           +++L  +  KK
Sbjct: 783 QRILNKLYKKK 793


>gi|297743431|emb|CBI36298.3| unnamed protein product [Vitis vinifera]
          Length = 641

 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 133/484 (27%), Positives = 235/484 (48%), Gaps = 30/484 (6%)

Query: 17  FFDMKSRGHVP---NVVSYTTLIHGYCRT---GEMDVAYKVFDEMRHCGVLPNSLTYSVL 70
           FFD  SRG      N  +Y++L+    R+    EM+V   V + MR   + P     S++
Sbjct: 79  FFDWVSRGQYSGPINGFAYSSLLKLLARSRVFSEMEV---VLENMRVEEMSPTREAMSIV 135

Query: 71  VRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDM 130
           ++    +  VE+A  L + + +      D+   N+    L++ L + G +          
Sbjct: 136 IQAYSDSGLVEKALELYYFVLKTYTYFPDVIACNS----LLNMLVKLGRI---------- 181

Query: 131 PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGC 190
                +  +F C  M+  LC+ G+     +++     +G  P+++ YN+++ G CK G  
Sbjct: 182 ----EIARKFTC-IMVKGLCKEGKLEEGRKLIEDRWGQGCIPNIIFYNTLIDGYCKKGDM 236

Query: 191 MRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIY 250
             A  L  E    G+LP+  TY  ++ G C + D +   ++L  M S+      ++ N  
Sbjct: 237 EMANGLFIELKLKGFLPTVETYGAIINGFCKKGDFKAIDRLLMEMNSRGLTVNVQVYNTI 296

Query: 251 LRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKF 310
           + A     +  + +  +  M++  C+PD++T NT+I+G C+ G++ EA ++L +   GK 
Sbjct: 297 IDARYKHGHIVKAVETIEGMIECGCKPDIVTYNTLISGSCRDGKVSEADQLL-EQALGKG 355

Query: 311 CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEA 370
             P+  ++T +I      G    A N L + M +RG+ P +VTY A++ GL     V+ A
Sbjct: 356 LMPNKFSYTPLIHAYCKQGGYDRASNWLIE-MTERGHKPDLVTYGALVHGLVVAGEVDVA 414

Query: 371 KEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKG 430
             +   ML  GV  D+  Y I++ GLC+  +L  AK    +++  S + D +VYA ++ G
Sbjct: 415 LTIREKMLERGVFPDAGIYNILMSGLCKKFKLPAAKLLLAEMLDQSVLPDAFVYATLVDG 474

Query: 431 LCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD 490
             R+G + EA       ++ G+ P IV YN +I G CK  M ++A   +  M+K  L PD
Sbjct: 475 FIRNGNLDEARKLFELTIEKGMNPGIVGYNAMIKGYCKFGMMKDAMACINRMKKRHLAPD 534

Query: 491 AVTW 494
             T+
Sbjct: 535 EFTY 538



 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 110/410 (26%), Positives = 195/410 (47%), Gaps = 42/410 (10%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   ++ E  KL  D   +G +PN++ Y TLI GYC+ G+M++A  +F E++  G LP 
Sbjct: 195 LCKEGKLEEGRKLIEDRWGQGCIPNIIFYNTLIDGYCKKGDMEMANGLFIELKLKGFLPT 254

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             TY  ++ G  +  D +  + L+ ++  R      L+VN   +  ++D+  + G++ + 
Sbjct: 255 VETYGAIINGFCKKGDFKAIDRLLMEMNSR-----GLTVNVQVYNTIIDARYKHGHIVKA 309

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
               E M +     +      +I   CR G+   A +++     +GL P+  SY  ++H 
Sbjct: 310 VETIEGMIECGCKPDIVTYNTLISGSCRDGKVSEADQLLEQALGKGLMPNKFSYTPLIHA 369

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK GG  RA   L E  + G+ P   TY  LV GL    +++ A  + + ML +     
Sbjct: 370 YCKQGGYDRASNWLIEMTERGHKPDLVTYGALVHGLVVAGEVDVALTIREKMLERG---- 425

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                                   VF       PD    N +++G CK  ++  A  +L 
Sbjct: 426 ------------------------VF-------PDAGIYNILMSGLCKKFKLPAAKLLLA 454

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           +M+  +   PDA  + T++ G +  G + EA  L +++  ++G +PGIV YNA+++G  +
Sbjct: 455 EML-DQSVLPDAFVYATLVDGFIRNGNLDEARKL-FELTIEKGMNPGIVGYNAMIKGYCK 512

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413
              +++A    N M    +  D  TY+ VIDG  + + LD A++ + ++V
Sbjct: 513 FGMMKDAMACINRMKKRHLAPDEFTYSTVIDGYVKQHDLDGAQKMFREMV 562



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 83/327 (25%), Positives = 153/327 (46%), Gaps = 12/327 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C    +  A+ LF ++K +G +P V +Y  +I+G+C+ G+     ++  EM   G+
Sbjct: 227 IDGYCKKGDMEMANGLFIELKLKGFLPTVETYGAIINGFCKKGDFKAIDRLLMEMNSRGL 286

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKE---EEDLSVNNAAFANLVDSLCRE 117
             N   Y+ ++    +   + +A     +  E M E   + D+   N     L+   CR+
Sbjct: 287 TVNVQVYNTIIDARYKHGHIVKA----VETIEGMIECGCKPDIVTYNT----LISGSCRD 338

Query: 118 GYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
           G V+E  ++ E       +  +F+   +I + C+ G    AS  +  M +RG  P LV+Y
Sbjct: 339 GKVSEADQLLEQALGKGLMPNKFSYTPLIHAYCKQGGYDRASNWLIEMTERGHKPDLVTY 398

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
            ++VHGL   G    A  + E+ ++ G  P    Y +L+ GLC +  L  A+ +L  ML 
Sbjct: 399 GALVHGLVVAGEVDVALTIREKMLERGVFPDAGIYNILMSGLCKKFKLPAAKLLLAEMLD 458

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
           +  +    +    +       N  E   +    ++    P ++  N +I G+CK G +++
Sbjct: 459 QSVLPDAFVYATLVDGFIRNGNLDEARKLFELTIEKGMNPGIVGYNAMIKGYCKFGMMKD 518

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFG 324
           A+  +N M   +  APD  T++T+I G
Sbjct: 519 AMACINRM-KKRHLAPDEFTYSTVIDG 544



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 108/424 (25%), Positives = 190/424 (44%), Gaps = 23/424 (5%)

Query: 76  RTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKS 135
           R RDVE    L F  W   + +    +N  A+++L+  L R    +E+  + E+M   + 
Sbjct: 69  RIRDVELG--LKFFDWVS-RGQYSGPINGFAYSSLLKLLARSRVFSEMEVVLENMRVEEM 125

Query: 136 VNEEFACGHMIDSLCRSGRNHGASRVVY-VMRKRGLTPSLVSYNSIVHGLCKHGGCMRAY 194
                A   +I +   SG    A  + Y V++     P +++ NS+++ L K G    A 
Sbjct: 126 SPTREAMSIVIQAYSDSGLVEKALELYYFVLKTYTYFPDVIACNSLLNMLVKLGRIEIAR 185

Query: 195 QLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRAL 254
           +                  ++V+GLC E  LE+ RK+++    +  +      N  +   
Sbjct: 186 KFT---------------CIMVKGLCKEGKLEEGRKLIEDRWGQGCIPNIIFYNTLIDGY 230

Query: 255 CLIKNPTELLNVLVFMLQTQ-CQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAP 313
           C  K   E+ N L   L+ +   P V T   +INGFCK G  +   ++L +M +      
Sbjct: 231 CK-KGDMEMANGLFIELKLKGFLPTVETYGAIINGFCKKGDFKAIDRLLMEMNSRGLTV- 288

Query: 314 DAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEV 373
           +   + TII      G I +A+  + + M + G  P IVTYN ++ G  R  +V EA ++
Sbjct: 289 NVQVYNTIIDARYKHGHIVKAVETI-EGMIECGCKPDIVTYNTLISGSCRDGKVSEADQL 347

Query: 374 FNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR 433
               LG G++ +  +Y  +I   C+    D A  +  ++    +  D   Y A++ GL  
Sbjct: 348 LEQALGKGLMPNKFSYTPLIHAYCKQGGYDRASNWLIEMTERGHKPDLVTYGALVHGLVV 407

Query: 434 SGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVT 493
           +G++  A+    ++++ GV P+   YN+++ G CK      A  +L EM    + PDA  
Sbjct: 408 AGEVDVALTIREKMLERGVFPDAGIYNILMSGLCKKFKLPAAKLLLAEMLDQSVLPDAFV 467

Query: 494 WRIL 497
           +  L
Sbjct: 468 YATL 471



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 111/244 (45%), Gaps = 20/244 (8%)

Query: 264 LNVLVFMLQTQCQ-PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTII 322
           L +  F+L+T    PDVI  N+++N   K+GRIE A K                 FT I+
Sbjct: 149 LELYYFVLKTYTYFPDVIACNSLLNMLVKLGRIEIARK-----------------FTCIM 191

Query: 323 F-GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG 381
             GL   G+++E   L+     Q G  P I+ YN ++ G  +   +E A  +F  +   G
Sbjct: 192 VKGLCKEGKLEEGRKLIEDRWGQ-GCIPNIIFYNTLIDGYCKKGDMEMANGLFIELKLKG 250

Query: 382 VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAV 441
            +    TY  +I+G C+        R   ++       +  VY  +I    + G I +AV
Sbjct: 251 FLPTVETYGAIINGFCKKGDFKAIDRLLMEMNSRGLTVNVQVYNTIIDARYKHGHIVKAV 310

Query: 442 HFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLH 501
             +  +++ G  P+IV YN +I G+C+     EA Q+L +    GL P+  ++  L   +
Sbjct: 311 ETIEGMIECGCKPDIVTYNTLISGSCRDGKVSEADQLLEQALGKGLMPNKFSYTPLIHAY 370

Query: 502 GNRG 505
             +G
Sbjct: 371 CKQG 374


>gi|356502394|ref|XP_003520004.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 525

 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 133/477 (27%), Positives = 227/477 (47%), Gaps = 8/477 (1%)

Query: 22  SRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVE 81
           S G  P+V + T +I+  C        + V   M   GV P  +T++ L+ G+    +V 
Sbjct: 35  SLGVKPDVHTLTIVINCLCHLKHTVFGFSVLGAMFKIGVEPTVVTFATLINGLCAEGNVG 94

Query: 82  RANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP-QGKSVNEEF 140
            A      L E M  E     N+     +++ LC+ G         E +  + +  +   
Sbjct: 95  AAARFADSL-EDMGYES----NSYTHGTIINGLCKVGDTAGAISYLEKIEGRNRGFDLLI 149

Query: 141 ACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEG 200
           A   ++DSLC+ G    A      M  +G+ P LV+YNS++HGLC  G    A  LL   
Sbjct: 150 AYSTIMDSLCKDGMLCLALNFFSGMTCKGIQPDLVAYNSLIHGLCSFGRWNEATTLLGNM 209

Query: 201 IQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNP 260
           ++ G +P+  T+ VLV+  C E  + +A+ ++ FM+           N  +   CL+   
Sbjct: 210 MRKGIMPNVQTFNVLVDNFCKEGKISRAKTIMCFMVHVGVEPDVVTYNSVISGHCLLSQM 269

Query: 261 TELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTT 320
            + + V   M+     P+V+T +++I+G+CK   I +A+ VL++MV       D VT++T
Sbjct: 270 NDAVKVFELMIHKGLLPNVVTYSSLIHGWCKTRNINKAIFVLDEMVNNGL-NLDVVTWST 328

Query: 321 IIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI 380
           +I G    GR + A+ L +  M +    P + T   +L GLF+ +   EA  +F  M  +
Sbjct: 329 LIGGFCKAGRPEAAIEL-FCTMHEHHQLPNLQTCAIILDGLFKCQFHSEAISLFRKMEKM 387

Query: 381 GVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEA 440
            +  +  TY IV+DG+C   + ++A+  +  +       D   Y  MIKGLC+ G + +A
Sbjct: 388 NLELNIVTYNIVLDGMCSFGKFNDARELFSCLPSKGIQIDVVAYTTMIKGLCKEGLLDDA 447

Query: 441 VHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
              L ++ ++G  PN   YNV++ G  +      + + L  M+  GL+ DA T  +L
Sbjct: 448 EDLLMKMEENGCPPNEFTYNVLVRGLLQRYDISRSTKYLMLMKGKGLSADATTTELL 504



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 104/413 (25%), Positives = 180/413 (43%), Gaps = 42/413 (10%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           MD LC    +  A   F  M  +G  P++V+Y +LIHG C  G  + A  +   M   G+
Sbjct: 155 MDSLCKDGMLCLALNFFSGMTCKGIQPDLVAYNSLIHGLCSFGRWNEATTLLGNMMRKGI 214

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +PN  T++VLV    +   + RA  +M      +  E D+   N+  +            
Sbjct: 215 MPNVQTFNVLVDNFCKEGKISRAKTIMC-FMVHVGVEPDVVTYNSVIS------------ 261

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                                 GH     C   + + A +V  +M  +GL P++V+Y+S+
Sbjct: 262 ----------------------GH-----CLLSQMNDAVKVFELMIHKGLLPNVVTYSSL 294

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +HG CK     +A  +L+E +  G      T+  L+ G C     E A ++   M     
Sbjct: 295 IHGWCKTRNINKAIFVLDEMVNNGLNLDVVTWSTLIGGFCKAGRPEAAIELFCTMHEHHQ 354

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           +   + C I L  L   +  +E +++   M +   + +++T N V++G C  G+  +A +
Sbjct: 355 LPNLQTCAIILDGLFKCQFHSEAISLFRKMEKMNLELNIVTYNIVLDGMCSFGKFNDA-R 413

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
            L   +  K    D V +TT+I GL   G + +A +LL + M + G  P   TYN ++RG
Sbjct: 414 ELFSCLPSKGIQIDVVAYTTMIKGLCKEGLLDDAEDLLMK-MEENGCPPNEFTYNVLVRG 472

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413
           L +   +  + +    M G G+ AD+TT  ++I     + +    + F    V
Sbjct: 473 LLQRYDISRSTKYLMLMKGKGLSADATTTELLISYFSANKENSALQVFLQKFV 525



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 93/391 (23%), Positives = 171/391 (43%), Gaps = 38/391 (9%)

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
           +I+ LC          V+  M K G+ P++V++ ++++GLC  G    A +  +     G
Sbjct: 48  VINCLCHLKHTVFGFSVLGAMFKIGVEPTVVTFATLINGLCAEGNVGAAARFADSLEDMG 107

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK-KDVDRTRICNIYLRALCLIKNPTEL 263
           Y  + +T+  ++ GLC   D   A   L+ +  + +  D     +  + +LC        
Sbjct: 108 YESNSYTHGTIINGLCKVGDTAGAISYLEKIEGRNRGFDLLIAYSTIMDSLCKDGMLCLA 167

Query: 264 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF 323
           LN    M     QPD++  N++I+G C  GR  EA  +L +M+  K   P+  TF  ++ 
Sbjct: 168 LNFFSGMTCKGIQPDLVAYNSLIHGLCSFGRWNEATTLLGNMMR-KGIMPNVQTFNVLVD 226

Query: 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 383
                G+I  A  ++   M   G  P +VTYN+V+ G   L ++ +A +VF  M+  G++
Sbjct: 227 NFCKEGKISRAKTIMC-FMVHVGVEPDVVTYNSVISGHCLLSQMNDAVKVFELMIHKGLL 285

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
            +  TY+ +I G C++  +++A    D++V      D   ++ +I G C++G+   A+  
Sbjct: 286 PNVVTYSSLIHGWCKTRNINKAIFVLDEMVNNGLNLDVVTWSTLIGGFCKAGRPEAAIEL 345

Query: 444 LYELVDSGVTPN-----------------------------------IVCYNVVIDGACK 468
              + +    PN                                   IV YN+V+DG C 
Sbjct: 346 FCTMHEHHQLPNLQTCAIILDGLFKCQFHSEAISLFRKMEKMNLELNIVTYNIVLDGMCS 405

Query: 469 LSMKREAYQILREMRKNGLNPDAVTWRILDK 499
                +A ++   +   G+  D V +  + K
Sbjct: 406 FGKFNDARELFSCLPSKGIQIDVVAYTTMIK 436



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 139/307 (45%), Gaps = 5/307 (1%)

Query: 193 AYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC-NIYL 251
           A  L++     G  P  HT  +++  LC          VL  M  K  V+ T +     +
Sbjct: 26  AISLIKHTYSLGVKPDVHTLTIVINCLCHLKHTVFGFSVLGAMF-KIGVEPTVVTFATLI 84

Query: 252 RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC 311
             LC   N          +     + +  T  T+ING CK+G    A+  L + + G+  
Sbjct: 85  NGLCAEGNVGAAARFADSLEDMGYESNSYTHGTIINGLCKVGDTAGAISYL-EKIEGRNR 143

Query: 312 APD-AVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEA 370
             D  + ++TI+  L   G +  ALN  +  M  +G  P +V YN+++ GL    R  EA
Sbjct: 144 GFDLLIAYSTIMDSLCKDGMLCLALN-FFSGMTCKGIQPDLVAYNSLIHGLCSFGRWNEA 202

Query: 371 KEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKG 430
             +   M+  G++ +  T+ +++D  C+  ++  AK     +V      D   Y ++I G
Sbjct: 203 TTLLGNMMRKGIMPNVQTFNVLVDNFCKEGKISRAKTIMCFMVHVGVEPDVVTYNSVISG 262

Query: 431 LCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD 490
            C   ++++AV     ++  G+ PN+V Y+ +I G CK     +A  +L EM  NGLN D
Sbjct: 263 HCLLSQMNDAVKVFELMIHKGLLPNVVTYSSLIHGWCKTRNINKAIFVLDEMVNNGLNLD 322

Query: 491 AVTWRIL 497
            VTW  L
Sbjct: 323 VVTWSTL 329


>gi|242092708|ref|XP_002436844.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
 gi|241915067|gb|EER88211.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
          Length = 755

 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 124/507 (24%), Positives = 247/507 (48%), Gaps = 10/507 (1%)

Query: 4   LCGLSRVGEAHK-LFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           LC   RV EA   L   M   G  P+VV+Y T+I+G+ R G+++ AY +F EM   G+ P
Sbjct: 135 LCDAKRVDEATDILLLRMSEFGCPPDVVAYNTVINGFFREGQVEKAYNLFLEMMDQGIPP 194

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           N +TY+ ++ G+ + + V+RA  +  ++ +R      +  +N  +  L+      G   E
Sbjct: 195 NVVTYTTVIDGLCKAQVVDRAKGVFQQMIDR-----GVKPDNGTYNCLIHGYLSTGKWKE 249

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
           V ++ E+M       +      ++D LC++GR   A      M ++G+ P +  Y  ++H
Sbjct: 250 VVQMLEEMSTHGLEPDCITYALLLDYLCKNGRCREARLFFDSMFRKGIKPDVAIYAILLH 309

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           G    G     +  L+  +  G  P+   + ++      ++ +E+A  +   M  +    
Sbjct: 310 GYATKGALSEMHSFLDLMVGNGVSPNRRIFNIMFCAYAKKAMIEEAMHIFNKMRQQGLSP 369

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
                   + ALC +    + +     M+     P++   ++++ G C +G+ E+A ++ 
Sbjct: 370 DVVSFGALIDALCKLGRVDDAVLQFNQMINEGVTPNIFVFSSLVYGLCTVGKWEKAEELF 429

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
            +++    C  DAV F T++  L N GR+ EA  L+  +M + G  P +++YN ++ G  
Sbjct: 430 FEVLDQGICV-DAVFFNTLMCNLCNEGRVMEAQRLI-DLMIRVGVRPNVISYNTLVAGHC 487

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
              R++EA ++ + M+  G+  +  TY I++ G C++ ++D+A   + +++         
Sbjct: 488 LTGRIDEAAKLLDVMVSNGLKPNEFTYTILLRGYCKARRVDDAYSLFREMLMKGVTPVVA 547

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
            Y  ++ GL ++G+  EA      +++S    +I  YN++++G CK +   EA+++ R +
Sbjct: 548 TYNTILHGLFQTGRFSEANELYLNMINSRTKCDIYTYNIILNGLCKNNFVDEAFKMFRRL 607

Query: 483 RKNGLNPDAVTWRIL--DKLHGNRGND 507
                  D+VT+ I+    L G R  D
Sbjct: 608 CSKDPQLDSVTFNIMIGALLKGGRKED 634



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 136/507 (26%), Positives = 242/507 (47%), Gaps = 9/507 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    V  A  +F  M  RG  P+  +Y  LIHGY  TG+     ++ +EM   G+
Sbjct: 203 IDGLCKAQVVDRAKGVFQQMIDRGVKPDNGTYNCLIHGYLSTGKWKEVVQMLEEMSTHGL 262

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TY++L+  + +      A  L F    R   + D+++    +A L+     +G +
Sbjct: 263 EPDCITYALLLDYLCKNGRCREAR-LFFDSMFRKGIKPDVAI----YAILLHGYATKGAL 317

Query: 121 NEVFRIAEDM-PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           +E+    + M   G S N       M  +  +      A  +   MR++GL+P +VS+ +
Sbjct: 318 SEMHSFLDLMVGNGVSPNRRIF-NIMFCAYAKKAMIEEAMHIFNKMRQQGLSPDVVSFGA 376

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++  LCK G    A     + I  G  P+   +  LV GLC     EKA ++   +L + 
Sbjct: 377 LIDALCKLGRVDDAVLQFNQMINEGVTPNIFVFSSLVYGLCTVGKWEKAEELFFEVLDQG 436

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                   N  +  LC      E   ++  M++   +P+VI+ NT++ G C  GRI+EA 
Sbjct: 437 ICVDAVFFNTLMCNLCNEGRVMEAQRLIDLMIRVGVRPNVISYNTLVAGHCLTGRIDEAA 496

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           K+L+ MV+     P+  T+T ++ G     R+ +A + L++ M  +G +P + TYN +L 
Sbjct: 497 KLLDVMVSNGL-KPNEFTYTILLRGYCKARRVDDAYS-LFREMLMKGVTPVVATYNTILH 554

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
           GLF+  R  EA E++  M+      D  TY I+++GLC++N +DEA + +  +       
Sbjct: 555 GLFQTGRFSEANELYLNMINSRTKCDIYTYNIILNGLCKNNFVDEAFKMFRRLCSKDPQL 614

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           D+  +  MI  L + G+  +A+     +   G+ P++V Y ++ +   +     E   + 
Sbjct: 615 DSVTFNIMIGALLKGGRKEDAMDLFATISAYGLVPDVVTYRLIAENLIEEGSLGEFDGLF 674

Query: 480 REMRKNGLNPDAVTWRILDKLHGNRGN 506
             M K+G  P++     L +   +RG+
Sbjct: 675 SAMEKSGTAPNSHMLNALVRRLLHRGD 701



 Score =  178 bits (451), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 129/478 (26%), Positives = 222/478 (46%), Gaps = 12/478 (2%)

Query: 27  PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERA-NV 85
           PN  +Y+ LI  +CR G ++  +  F  +   G   N +  S L++G+   + V+ A ++
Sbjct: 88  PNACTYSILIGCFCRMGRLEHGFAAFGLILKTGWRVNVIVISQLLKGLCDAKRVDEATDI 147

Query: 86  LMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRI-AEDMPQGKSVNEEFACGH 144
           L+ ++      E     +  A+  +++   REG V + + +  E M QG   N       
Sbjct: 148 LLLRM-----SEFGCPPDVVAYNTVINGFFREGQVEKAYNLFLEMMDQGIPPN-VVTYTT 201

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
           +ID LC++     A  V   M  RG+ P   +YN ++HG    G      Q+LEE    G
Sbjct: 202 VIDGLCKAQVVDRAKGVFQQMIDRGVKPDNGTYNCLIHGYLSTGKWKEVVQMLEEMSTHG 261

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL 264
             P   TY +L++ LC      +AR     M  K       I  I L         +E+ 
Sbjct: 262 LEPDCITYALLLDYLCKNGRCREARLFFDSMFRKGIKPDVAIYAILLHGYATKGALSEMH 321

Query: 265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 324
           + L  M+     P+    N +   + K   IEEA+ + N M      +PD V+F  +I  
Sbjct: 322 SFLDLMVGNGVSPNRRIFNIMFCAYAKKAMIEEAMHIFNKMRQQGL-SPDVVSFGALIDA 380

Query: 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 384
           L  +GR+ +A+ L +  M   G +P I  +++++ GL  + + E+A+E+F  +L  G+  
Sbjct: 381 LCKLGRVDDAV-LQFNQMINEGVTPNIFVFSSLVYGLCTVGKWEKAEELFFEVLDQGICV 439

Query: 385 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFL 444
           D+  +  ++  LC   ++ EA+R  D ++      +   Y  ++ G C +G+I EA   L
Sbjct: 440 DAVFFNTLMCNLCNEGRVMEAQRLIDLMIRVGVRPNVISYNTLVAGHCLTGRIDEAAKLL 499

Query: 445 YELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
             +V +G+ PN   Y +++ G CK     +AY + REM   G+ P   T+  +  LHG
Sbjct: 500 DVMVSNGLKPNEFTYTILLRGYCKARRVDDAYSLFREMLMKGVTPVVATYNTI--LHG 555



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 122/508 (24%), Positives = 234/508 (46%), Gaps = 14/508 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKV-FDEMRHCGVLP 62
            C + R+      F  +   G   NV+  + L+ G C    +D A  +    M   G  P
Sbjct: 100 FCRMGRLEHGFAAFGLILKTGWRVNVIVISQLLKGLCDAKRVDEATDILLLRMSEFGCPP 159

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           + + Y+ ++ G  R   VE+A  L  ++      ++ +  N   +  ++D LC+   V+ 
Sbjct: 160 DVVAYNTVINGFFREGQVEKAYNLFLEMM-----DQGIPPNVVTYTTVIDGLCKAQVVDR 214

Query: 123 VFRIAEDM-PQG-KSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
              + + M  +G K  N  + C  +I     +G+     +++  M   GL P  ++Y  +
Sbjct: 215 AKGVFQQMIDRGVKPDNGTYNC--LIHGYLSTGKWKEVVQMLEEMSTHGLEPDCITYALL 272

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +  LCK+G C  A    +   + G  P    Y +L+ G   +  L +    L  M+    
Sbjct: 273 LDYLCKNGRCREARLFFDSMFRKGIKPDVAIYAILLHGYATKGALSEMHSFLDLMVGNGV 332

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
               RI NI   A        E +++   M Q    PDV++   +I+  CK+GR+++A+ 
Sbjct: 333 SPNRRIFNIMFCAYAKKAMIEEAMHIFNKMRQQGLSPDVVSFGALIDALCKLGRVDDAVL 392

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
             N M+  +   P+   F+++++GL  VG+ ++A  L ++V+ Q G     V +N ++  
Sbjct: 393 QFNQMI-NEGVTPNIFVFSSLVYGLCTVGKWEKAEELFFEVLDQ-GICVDAVFFNTLMCN 450

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L    RV EA+ + + M+ +GV  +  +Y  ++ G C + ++DEA +  D +V      +
Sbjct: 451 LCNEGRVMEAQRLIDLMIRVGVRPNVISYNTLVAGHCLTGRIDEAAKLLDVMVSNGLKPN 510

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
            + Y  +++G C++ ++ +A     E++  GVTP +  YN ++ G  +     EA ++  
Sbjct: 511 EFTYTILLRGYCKARRVDDAYSLFREMLMKGVTPVVATYNTILHGLFQTGRFSEANELYL 570

Query: 481 EMRKNGLNPDAVTWRILDKLHGNRGNDF 508
            M  +    D  T+ I+  L+G   N+F
Sbjct: 571 NMINSRTKCDIYTYNII--LNGLCKNNF 596



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 123/503 (24%), Positives = 225/503 (44%), Gaps = 43/503 (8%)

Query: 35  LIHGYCRTGEM--DVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWE 92
           +I    R+G +  D A K+FDE+ HC    +   ++ L+  V R      A+  +  L+ 
Sbjct: 18  VIASRARSGSLGLDEALKLFDELLHCARPASVRAFNQLLTVVSRA-GCSSASERVVSLFT 76

Query: 93  RMKEE--EDLSVNNAAFANLVDSLCREGYVNEVFR-IAEDMPQGKSVNEEFACGHMIDSL 149
           RM  E    ++ N   ++ L+   CR G +   F      +  G  VN       ++  L
Sbjct: 77  RMARECSSKVAPNACTYSILIGCFCRMGRLEHGFAAFGLILKTGWRVNV-IVISQLLKGL 135

Query: 150 CRSGRNHGASRVVYV-MRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPS 208
           C + R   A+ ++ + M + G  P +V+YN++++G  + G   +AY L  E +  G  P+
Sbjct: 136 CDAKRVDEATDILLLRMSEFGCPPDVVAYNTVINGFFREGQVEKAYNLFLEMMDQGIPPN 195

Query: 209 EHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLV 268
             TY  +++GLC    +++A+ V Q M+ +         N  +          E++ +L 
Sbjct: 196 VVTYTTVIDGLCKAQVVDRAKGVFQQMIDRGVKPDNGTYNCLIHGYLSTGKWKEVVQMLE 255

Query: 269 FMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNV 328
            M     +PD IT   +++  CK GR  EA ++  D +  K   PD   +  ++ G    
Sbjct: 256 EMSTHGLEPDCITYALLLDYLCKNGRCREA-RLFFDSMFRKGIKPDVAIYAILLHGYATK 314

Query: 329 GRIQEALNLL----------------------------------YQVMPQRGYSPGIVTY 354
           G + E  + L                                  +  M Q+G SP +V++
Sbjct: 315 GALSEMHSFLDLMVGNGVSPNRRIFNIMFCAYAKKAMIEEAMHIFNKMRQQGLSPDVVSF 374

Query: 355 NAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVW 414
            A++  L +L RV++A   FN M+  GV  +   ++ ++ GLC   + ++A+  + +++ 
Sbjct: 375 GALIDALCKLGRVDDAVLQFNQMINEGVTPNIFVFSSLVYGLCTVGKWEKAEELFFEVLD 434

Query: 415 PSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKRE 474
                D   +  ++  LC  G++ EA   +  ++  GV PN++ YN ++ G C      E
Sbjct: 435 QGICVDAVFFNTLMCNLCNEGRVMEAQRLIDLMIRVGVRPNVISYNTLVAGHCLTGRIDE 494

Query: 475 AYQILREMRKNGLNPDAVTWRIL 497
           A ++L  M  NGL P+  T+ IL
Sbjct: 495 AAKLLDVMVSNGLKPNEFTYTIL 517



 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 118/451 (26%), Positives = 216/451 (47%), Gaps = 15/451 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFD-MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCG 59
           +D LC   R  EA +LFFD M  +G  P+V  Y  L+HGY   G +   +   D M   G
Sbjct: 273 LDYLCKNGRCREA-RLFFDSMFRKGIKPDVAIYAILLHGYATKGALSEMHSFLDLMVGNG 331

Query: 60  VLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGY 119
           V PN   ++++     +   +E A      ++ +M+++  LS +  +F  L+D+LC+ G 
Sbjct: 332 VSPNRRIFNIMFCAYAKKAMIEEA----MHIFNKMRQQ-GLSPDVVSFGALIDALCKLGR 386

Query: 120 VNE-VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
           V++ V +  + + +G + N  F    ++  LC  G+   A  + + +  +G+    V +N
Sbjct: 387 VDDAVLQFNQMINEGVTPNI-FVFSSLVYGLCTVGKWEKAEELFFEVLDQGICVDAVFFN 445

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
           +++  LC  G  M A +L++  I+ G  P+  +Y  LV G C    +++A K+L  M+S 
Sbjct: 446 TLMCNLCNEGRVMEAQRLIDLMIRVGVRPNVISYNTLVAGHCLTGRIDEAAKLLDVMVSN 505

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
                     I LR  C  +   +  ++   ML     P V T NT+++G  + GR  EA
Sbjct: 506 GLKPNEFTYTILLRGYCKARRVDDAYSLFREMLMKGVTPVVATYNTILHGLFQTGRFSEA 565

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGI--VTYNA 356
            ++  +M+  +    D  T+  I+ GL     + EA  +  ++  +    P +  VT+N 
Sbjct: 566 NELYLNMINSR-TKCDIYTYNIILNGLCKNNFVDEAFKMFRRLCSK---DPQLDSVTFNI 621

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416
           ++  L +  R E+A ++F  +   G+V D  TY ++ + L E   L E    +  +    
Sbjct: 622 MIGALLKGGRKEDAMDLFATISAYGLVPDVVTYRLIAENLIEEGSLGEFDGLFSAMEKSG 681

Query: 417 NIHDNYVYAAMIKGLCRSGKIHEAVHFLYEL 447
              ++++  A+++ L   G I  A  +LY+L
Sbjct: 682 TAPNSHMLNALVRRLLHRGDISRAGVYLYKL 712



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 59/132 (44%), Gaps = 15/132 (11%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           R  +A  LF  + + G VP+VV+Y  +       G +     +F  M   G  PNS   +
Sbjct: 631 RKEDAMDLFATISAYGLVPDVVTYRLIAENLIEEGSLGEFDGLFSAMEKSGTAPNSHMLN 690

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
            LVR +L   D+ RA V ++KL     +E++ S+  +  + L+    R  Y         
Sbjct: 691 ALVRRLLHRGDISRAGVYLYKL-----DEKNFSLEASTTSMLISLYSRGEY--------- 736

Query: 129 DMPQGKSVNEEF 140
             P  KS+ E++
Sbjct: 737 -QPHAKSLPEKY 747


>gi|255571081|ref|XP_002526491.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534166|gb|EEF35882.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 884

 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 138/495 (27%), Positives = 241/495 (48%), Gaps = 20/495 (4%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           R  +A      M   G  P++++++T+I  +C  G +  A K+F+ ++  G+ PN   Y+
Sbjct: 328 RTSDALGFLHLMIKNGCKPSLITFSTIITAFCNEGNVVEARKIFEGIQEVGLSPNVAMYN 387

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
            L+ G  + RDV +AN+    L+E M+ ++ ++ + A F  LV    + G   + + +  
Sbjct: 388 TLMSGYFKARDVCQANM----LYEEMR-DKGIAPDGATFNILVAGNYKYGKEADSYELFR 442

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
           D      V +       +  LC +G+   A + +  M ++G+ PS+V++NS++    + G
Sbjct: 443 DWSLSSLVPDCSLYDVSVAGLCWAGQLDEAMQFLEDMLEKGMPPSVVAFNSVIAAYSRAG 502

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK----KDVDRT 244
               A++  +  + FG +PS  T   ++ GL  +  L++AR +L  M+ K      V  T
Sbjct: 503 FEDNAHKAYKIMLMFGLVPSSSTCSSMLLGLSKKGRLQEARDLLYKMIDKGLPVNKVAFT 562

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQ--CQPDVITLNTVINGFCKMGRIEEALKVL 302
            + + Y +        T   + L + ++ +  C PD I  +  I+G  K G +EEA +  
Sbjct: 563 VLLDGYFKV-----GDTAGAHSLWYEMEARGIC-PDAIAFSAFIDGLSKAGLVEEAYEAF 616

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
           ++M    F  P+   + ++I GL N G++ EAL L  + M Q+G  P I T N ++ G  
Sbjct: 617 SEMSKKGF-VPNNFVYNSLIHGLCNCGKLHEALKLERE-MRQKGLLPDIFTTNIIINGFC 674

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
           +  R++ A + F  M  IGV  D+ TY  +I G C+   +  A  F + +       D  
Sbjct: 675 KEGRMKSAFDAFAEMHHIGVTPDTVTYNTLIGGYCKVLDMVSADEFLNKMYASGWDPDIT 734

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
            Y   I+G C S KI  AV  L EL+  GV PN V YN +++  C   + R A  +  ++
Sbjct: 735 TYNIRIQGFCSSQKISRAVTMLDELIAVGVVPNTVTYNTMMNAVCTDMLDR-AMVLTAKL 793

Query: 483 RKNGLNPDAVTWRIL 497
            K    P+ VT  +L
Sbjct: 794 LKMAFVPNVVTTNVL 808



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 130/503 (25%), Positives = 230/503 (45%), Gaps = 50/503 (9%)

Query: 34  TLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWER 93
           TL+ G+  +     + ++   MR  GV P+S   S+L R +LR  D       ++KL   
Sbjct: 213 TLMRGFMNSEMAYESLEILSRMREVGVRPSSSAISILFRLLLRVGDYGS----VWKLLRG 268

Query: 94  MKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAED----MPQGKSVNEEFACGHMIDSL 149
           M  +     N+  F  ++   C++GY+    R+AE     MP+     + +A   +I++ 
Sbjct: 269 MIRDGPRPCNH-NFNIMILCFCQKGYL----RVAESLLFVMPKFCCEPDVYAYNILINAY 323

Query: 150 CRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSE 209
              GR   A   +++M K G  PSL+++++I+   C  G  + A ++ E   + G  P+ 
Sbjct: 324 RIRGRTSDALGFLHLMIKNGCKPSLITFSTIITAFCNEGNVVEARKIFEGIQEVGLSPNV 383

Query: 210 HTYKVLVEGLCGESDLEKARKVLQFMLSK--------------------KDVDRTRI--- 246
             Y  L+ G     D+ +A  + + M  K                    K+ D   +   
Sbjct: 384 AMYNTLMSGYFKARDVCQANMLYEEMRDKGIAPDGATFNILVAGNYKYGKEADSYELFRD 443

Query: 247 ---------CNIY---LRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGR 294
                    C++Y   +  LC      E +  L  ML+    P V+  N+VI  + + G 
Sbjct: 444 WSLSSLVPDCSLYDVSVAGLCWAGQLDEAMQFLEDMLEKGMPPSVVAFNSVIAAYSRAGF 503

Query: 295 IEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTY 354
            + A K    M+      P + T ++++ GL   GR+QEA +LLY+ M  +G     V +
Sbjct: 504 EDNAHKAYKIMLMFGL-VPSSSTCSSMLLGLSKKGRLQEARDLLYK-MIDKGLPVNKVAF 561

Query: 355 NAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVW 414
             +L G F++     A  ++  M   G+  D+  ++  IDGL ++  ++EA   + ++  
Sbjct: 562 TVLLDGYFKVGDTAGAHSLWYEMEARGICPDAIAFSAFIDGLSKAGLVEEAYEAFSEMSK 621

Query: 415 PSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKRE 474
              + +N+VY ++I GLC  GK+HEA+    E+   G+ P+I   N++I+G CK    + 
Sbjct: 622 KGFVPNNFVYNSLIHGLCNCGKLHEALKLEREMRQKGLLPDIFTTNIIINGFCKEGRMKS 681

Query: 475 AYQILREMRKNGLNPDAVTWRIL 497
           A+    EM   G+ PD VT+  L
Sbjct: 682 AFDAFAEMHHIGVTPDTVTYNTL 704



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 97/367 (26%), Positives = 167/367 (45%), Gaps = 8/367 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   ++ EA +   DM  +G  P+VV++ ++I  Y R G  D A+K +  M   G++P+
Sbjct: 463 LCWAGQLDEAMQFLEDMLEKGMPPSVVAFNSVIAAYSRAGFEDNAHKAYKIMLMFGLVPS 522

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           S T S ++ G+ +   ++ A  L++K+ ++      L VN  AF  L+D   + G     
Sbjct: 523 SSTCSSMLLGLSKKGRLQEARDLLYKMIDK-----GLPVNKVAFTVLLDGYFKVGDTAGA 577

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             +  +M       +  A    ID L ++G    A      M K+G  P+   YNS++HG
Sbjct: 578 HSLWYEMEARGICPDAIAFSAFIDGLSKAGLVEEAYEAFSEMSKKGFVPNNFVYNSLIHG 637

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LC  G    A +L  E  Q G LP   T  +++ G C E  ++ A      M        
Sbjct: 638 LCNCGKLHEALKLEREMRQKGLLPDIFTTNIIINGFCKEGRMKSAFDAFAEMHHIGVTPD 697

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
           T   N  +   C + +       L  M  +   PD+ T N  I GFC   +I  A+ +L+
Sbjct: 698 TVTYNTLIGGYCKVLDMVSADEFLNKMYASGWDPDITTYNIRIQGFCSSQKISRAVTMLD 757

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           +++A     P+ VT+ T++   +    +  A+ L  +++ +  + P +VT N +L    +
Sbjct: 758 ELIAVG-VVPNTVTYNTMM-NAVCTDMLDRAMVLTAKLL-KMAFVPNVVTTNVLLSHFCK 814

Query: 364 LRRVEEA 370
               E+A
Sbjct: 815 QGMPEKA 821



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 157/317 (49%), Gaps = 20/317 (6%)

Query: 4   LCGLSRVG---EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           L GLS+ G   EA  L + M  +G   N V++T L+ GY + G+   A+ ++ EM   G+
Sbjct: 530 LLGLSKKGRLQEARDLLYKMIDKGLPVNKVAFTVLLDGYFKVGDTAGAHSLWYEMEARGI 589

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+++ +S  + G+ +   VE A    ++ +  M  ++    NN  + +L+  LC  G +
Sbjct: 590 CPDAIAFSAFIDGLSKAGLVEEA----YEAFSEM-SKKGFVPNNFVYNSLIHGLCNCGKL 644

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E  ++  +M Q   + + F    +I+  C+ GR   A      M   G+TP  V+YN++
Sbjct: 645 HEALKLEREMRQKGLLPDIFTTNIIINGFCKEGRMKSAFDAFAEMHHIGVTPDTVTYNTL 704

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G CK    + A + L +    G+ P   TY + ++G C    + +A  +L  +++   
Sbjct: 705 IGGYCKVLDMVSADEFLNKMYASGWDPDITTYNIRIQGFCSSQKISRAVTMLDELIAVGV 764

Query: 241 VDRTRICNIYLRALCLIKNPTELLN----VLVFMLQTQCQPDVITLNTVINGFCKMGRIE 296
           V  T   N  + A+C     T++L+    +   +L+    P+V+T N +++ FCK G  E
Sbjct: 765 VPNTVTYNTMMNAVC-----TDMLDRAMVLTAKLLKMAFVPNVVTTNVLLSHFCKQGMPE 819

Query: 297 EAL---KVLNDMVAGKF 310
           +AL   + LN ++   F
Sbjct: 820 KALIWGQKLNKLLRADF 836



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/324 (22%), Positives = 139/324 (42%), Gaps = 42/324 (12%)

Query: 209 EHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV---DRTRICNIYLRALCLIKNPTELLN 265
           E  + +L   + G  + E A + L+ +   ++V     +   +I  R L  + +   +  
Sbjct: 205 ESDFSILNTLMRGFMNSEMAYESLEILSRMREVGVRPSSSAISILFRLLLRVGDYGSVWK 264

Query: 266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCA-PDAVTFTTIIFG 324
           +L  M++   +P     N +I  FC+ G +  A  +L   V  KFC  PD   +  +I  
Sbjct: 265 LLRGMIRDGPRPCNHNFNIMILCFCQKGYLRVAESLL--FVMPKFCCEPDVYAYNILINA 322

Query: 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVT------------------------------- 353
               GR  +AL  L+ +M + G  P ++T                               
Sbjct: 323 YRIRGRTSDALGFLH-LMIKNGCKPSLITFSTIITAFCNEGNVVEARKIFEGIQEVGLSP 381

Query: 354 ----YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFW 409
               YN ++ G F+ R V +A  ++  M   G+  D  T+ I++ G  +  +  ++   +
Sbjct: 382 NVAMYNTLMSGYFKARDVCQANMLYEEMRDKGIAPDGATFNILVAGNYKYGKEADSYELF 441

Query: 410 DDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKL 469
            D    S + D  +Y   + GLC +G++ EA+ FL ++++ G+ P++V +N VI    + 
Sbjct: 442 RDWSLSSLVPDCSLYDVSVAGLCWAGQLDEAMQFLEDMLEKGMPPSVVAFNSVIAAYSRA 501

Query: 470 SMKREAYQILREMRKNGLNPDAVT 493
             +  A++  + M   GL P + T
Sbjct: 502 GFEDNAHKAYKIMLMFGLVPSSST 525



 Score = 44.7 bits (104), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 34/160 (21%), Positives = 61/160 (38%)

Query: 347 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
           Y       N ++RG        E+ E+ + M  +GV   S+  +I+   L          
Sbjct: 204 YESDFSILNTLMRGFMNSEMAYESLEILSRMREVGVRPSSSAISILFRLLLRVGDYGSVW 263

Query: 407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466
           +    ++       N+ +  MI   C+ G +  A   L+ +      P++  YN++I+  
Sbjct: 264 KLLRGMIRDGPRPCNHNFNIMILCFCQKGYLRVAESLLFVMPKFCCEPDVYAYNILINAY 323

Query: 467 CKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
                  +A   L  M KNG  P  +T+  +     N GN
Sbjct: 324 RIRGRTSDALGFLHLMIKNGCKPSLITFSTIITAFCNEGN 363


>gi|224095732|ref|XP_002310456.1| predicted protein [Populus trichocarpa]
 gi|222853359|gb|EEE90906.1| predicted protein [Populus trichocarpa]
          Length = 721

 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 126/521 (24%), Positives = 246/521 (47%), Gaps = 60/521 (11%)

Query: 4   LCGL---SRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           LCG     ++G   ++   M + G  P+   + +L+H YCR+G+   AYK+  +M  CG 
Sbjct: 84  LCGCLNKEKLGRCKRILSMMITEGCYPSPRIFNSLVHAYCRSGDYAYAYKLLKKMVQCGC 143

Query: 61  LPNSLTYSVLVRGVLRTRD----------------------VERANVLMF---------- 88
            P  + Y++L+ G+  + +                      + + N+  F          
Sbjct: 144 QPGYVVYNILIGGICSSEEPGKDVLDLAEKAYGEMLEAGVVLNKVNISNFSRCLCGIGKF 203

Query: 89  -KLWERMKE--EEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHM 145
            K +  ++E   +    + + ++ ++  LC    V + F++ ++M +     + +    +
Sbjct: 204 EKAYNVIREMMSKGFIPDTSTYSKVIGYLCNASKVEKAFQLFQEMKRNGIAPDVYVYTTL 263

Query: 146 IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY 205
           IDS C++G    A      M + G  P++V+Y +++H   K     +A ++ E  +  G 
Sbjct: 264 IDSFCKAGFIEQARNWFDEMERDGCAPNVVTYTALIHAYLKSRKVSKANEVYEMMLSKGC 323

Query: 206 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 265
            P+  TY  L++GLC    +EKA ++ + M  K++V+   + +++ R +    N      
Sbjct: 324 TPNIVTYTALIDGLCKAGKIEKASQIYKIM-KKENVEIPDV-DMHFRVVDGASN------ 375

Query: 266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM-VAGKFCAPDAVTFTTIIFG 324
                     +P+V T   +++G CK  +++EA  +L  M V G  C P+ V +  +I G
Sbjct: 376 ----------EPNVFTYGALVDGLCKAYQVKEARDLLKSMSVEG--CEPNHVVYDALIDG 423

Query: 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 384
               G++ EA  + +  M + GY P + TY++++  LF+ +R++ A +V + ML      
Sbjct: 424 CCKAGKLDEAQEV-FTTMLECGYDPNVYTYSSLIDRLFKDKRLDLALKVLSKMLENSCAP 482

Query: 385 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFL 444
           +   Y  +IDGLC+  + DEA +    +       +   Y AMI G  +SG++ + +  L
Sbjct: 483 NVVIYTEMIDGLCKVGKTDEAYKLMVMMEEKGCNPNVVTYTAMIDGFGKSGRVEKCLELL 542

Query: 445 YELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN 485
            ++   G  PN V Y V+I+  C   +  EA+++L EM++ 
Sbjct: 543 QQMSSKGCAPNFVTYRVLINHCCSTGLLDEAHKLLEEMKQT 583



 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 134/525 (25%), Positives = 242/525 (46%), Gaps = 32/525 (6%)

Query: 3   QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
            LC   +  EA  L   ++    VP+ V YT +I G C     + A      MR    LP
Sbjct: 19  SLCKSGKWREALSL---LEKEEFVPDTVLYTKMISGLCEASLFEEAMDFLTRMRASSCLP 75

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           N LTY +L+ G L    + R   ++      M   E    +   F +LV + CR G    
Sbjct: 76  NVLTYRILLCGCLNKEKLGRCKRIL-----SMMITEGCYPSPRIFNSLVHAYCRSGDYAY 130

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRS---GRN--HGASRVVYVMRKRGLTPSLVSY 177
            +++ + M Q            +I  +C S   G++    A +    M + G+  + V+ 
Sbjct: 131 AYKLLKKMVQCGCQPGYVVYNILIGGICSSEEPGKDVLDLAEKAYGEMLEAGVVLNKVNI 190

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
           ++    LC  G   +AY ++ E +  G++P   TY  ++  LC  S +EKA ++ Q M  
Sbjct: 191 SNFSRCLCGIGKFEKAYNVIREMMSKGFIPDTSTYSKVIGYLCNASKVEKAFQLFQEMKR 250

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
                   +    + + C      +  N    M +  C P+V+T   +I+ + K  ++ +
Sbjct: 251 NGIAPDVYVYTTLIDSFCKAGFIEQARNWFDEMERDGCAPNVVTYTALIHAYLKSRKVSK 310

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYS--------- 348
           A +V  +M+  K C P+ VT+T +I GL   G+I++A + +Y++M +             
Sbjct: 311 ANEVY-EMMLSKGCTPNIVTYTALIDGLCKAGKIEKA-SQIYKIMKKENVEIPDVDMHFR 368

Query: 349 --------PGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN 400
                   P + TY A++ GL +  +V+EA+++   M   G   +   Y  +IDG C++ 
Sbjct: 369 VVDGASNEPNVFTYGALVDGLCKAYQVKEARDLLKSMSVEGCEPNHVVYDALIDGCCKAG 428

Query: 401 QLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYN 460
           +LDEA+  +  ++      + Y Y+++I  L +  ++  A+  L +++++   PN+V Y 
Sbjct: 429 KLDEAQEVFTTMLECGYDPNVYTYSSLIDRLFKDKRLDLALKVLSKMLENSCAPNVVIYT 488

Query: 461 VVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
            +IDG CK+    EAY+++  M + G NP+ VT+  +    G  G
Sbjct: 489 EMIDGLCKVGKTDEAYKLMVMMEEKGCNPNVVTYTAMIDGFGKSG 533



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 124/486 (25%), Positives = 231/486 (47%), Gaps = 39/486 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C    + +A   F +M+  G  PNVV+YT LIH Y ++ ++  A +V++ M   G 
Sbjct: 264 IDSFCKAGFIEQARNWFDEMERDGCAPNVVTYTALIHAYLKSRKVSKANEVYEMMLSKGC 323

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +TY+ L+ G+ +   +E+A+    ++++ MK+E      N    +          V
Sbjct: 324 TPNIVTYTALIDGLCKAGKIEKAS----QIYKIMKKE------NVEIPD----------V 363

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +  FR+ +      +V   F  G ++D LC++ +   A  ++  M   G  P+ V Y+++
Sbjct: 364 DMHFRVVDGASNEPNV---FTYGALVDGLCKAYQVKEARDLLKSMSVEGCEPNHVVYDAL 420

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G CK G    A ++    ++ GY P+ +TY  L++ L  +  L+ A KVL  ML    
Sbjct: 421 IDGCCKAGKLDEAQEVFTTMLECGYDPNVYTYSSLIDRLFKDKRLDLALKVLSKMLENSC 480

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                I    +  LC +    E   ++V M +  C P+V+T   +I+GF K GR+E+ L+
Sbjct: 481 APNVVIYTEMIDGLCKVGKTDEAYKLMVMMEEKGCNPNVVTYTAMIDGFGKSGRVEKCLE 540

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +L  M + K CAP+ VT+  +I    + G + EA  LL + M Q  +   +  Y  V+ G
Sbjct: 541 LLQQM-SSKGCAPNFVTYRVLINHCCSTGLLDEAHKLLEE-MKQTYWPRHVAGYRKVIEG 598

Query: 361 LFRLRRVEEAKEVFNCMLGIGV-----VADSTTYAIVIDGLCESNQLDEAKRFWDDI--V 413
             R       + + +  L   +     V  +  Y ++ID   ++ +L+ A    +++   
Sbjct: 599 FNR-------EFIASLYLSFEISENDSVPVAPVYRVLIDNFIKAGRLEIALELNEELSSF 651

Query: 414 WPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKR 473
            P +  +  ++  +I+ L  + K  +A     +++  G  P +     +I G  +++   
Sbjct: 652 SPFSAANQNIHITLIENLSLAHKADKAFELYADMISRGSIPELSILVHLIKGLLRVNRWE 711

Query: 474 EAYQIL 479
           EA Q+L
Sbjct: 712 EALQLL 717



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 114/467 (24%), Positives = 197/467 (42%), Gaps = 96/467 (20%)

Query: 138 EEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLL 197
           +EF  G    SLC+SG+   A   + ++ K    P  V Y  ++ GLC+      A   L
Sbjct: 9   DEFTLGCFAHSLCKSGKWREA---LSLLEKEEFVPDTVLYTKMISGLCEASLFEEAMDFL 65

Query: 198 EEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLI 257
                   LP+  TY++L+ G   +  L + +++L  M+++      RI N  + A C  
Sbjct: 66  TRMRASSCLPNVLTYRILLCGCLNKEKLGRCKRILSMMITEGCYPSPRIFNSLVHAYCRS 125

Query: 258 KNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK-------------------------- 291
            +      +L  M+Q  CQP  +  N +I G C                           
Sbjct: 126 GDYAYAYKLLKKMVQCGCQPGYVVYNILIGGICSSEEPGKDVLDLAEKAYGEMLEAGVVL 185

Query: 292 --------------MGRIEEALKVLNDM--------------VAGKFC------------ 311
                         +G+ E+A  V+ +M              V G  C            
Sbjct: 186 NKVNISNFSRCLCGIGKFEKAYNVIREMMSKGFIPDTSTYSKVIGYLCNASKVEKAFQLF 245

Query: 312 --------APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
                   APD   +TT+I      G I++A N  +  M + G +P +VTY A++    +
Sbjct: 246 QEMKRNGIAPDVYVYTTLIDSFCKAGFIEQARN-WFDEMERDGCAPNVVTYTALIHAYLK 304

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFW-----DDIVWP--- 415
            R+V +A EV+  ML  G   +  TY  +IDGLC++ ++++A + +     +++  P   
Sbjct: 305 SRKVSKANEVYEMMLSKGCTPNIVTYTALIDGLCKAGKIEKASQIYKIMKKENVEIPDVD 364

Query: 416 ---------SNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466
                    SN  + + Y A++ GLC++ ++ EA   L  +   G  PN V Y+ +IDG 
Sbjct: 365 MHFRVVDGASNEPNVFTYGALVDGLCKAYQVKEARDLLKSMSVEGCEPNHVVYDALIDGC 424

Query: 467 CKLSMKREAYQILREMRKNGLNPDAVTW-RILDKLHGNRGNDFGLRI 512
           CK     EA ++   M + G +P+  T+  ++D+L  ++  D  L++
Sbjct: 425 CKAGKLDEAQEVFTTMLECGYDPNVYTYSSLIDRLFKDKRLDLALKV 471



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 100/377 (26%), Positives = 167/377 (44%), Gaps = 46/377 (12%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   +V EA  L   M   G  PN V Y  LI G C+ G++D A +VF  M  CG 
Sbjct: 386 VDGLCKAYQVKEARDLLKSMSVEGCEPNHVVYDALIDGCCKAGKLDEAQEVFTTMLECGY 445

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN  TYS L+  + + + ++    L  K+  +M E       N+   N+V         
Sbjct: 446 DPNVYTYSSLIDRLFKDKRLD----LALKVLSKMLE-------NSCAPNVV--------- 485

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
             ++                    MID LC+ G+   A +++ +M ++G  P++V+Y ++
Sbjct: 486 --IYT------------------EMIDGLCKVGKTDEAYKLMVMMEEKGCNPNVVTYTAM 525

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G  K G   +  +LL++    G  P+  TY+VL+   C    L++A K+L+ M   K 
Sbjct: 526 IDGFGKSGRVEKCLELLQQMSSKGCAPNFVTYRVLINHCCSTGLLDEAHKLLEEM---KQ 582

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFML-QTQCQPDVITLNTVINGFCKMGRIEEAL 299
               R    Y + +            L F + +    P       +I+ F K GR+E AL
Sbjct: 583 TYWPRHVAGYRKVIEGFNREFIASLYLSFEISENDSVPVAPVYRVLIDNFIKAGRLEIAL 642

Query: 300 KVLNDMVA-GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
           ++  ++ +   F A +     T+I  L    +  +A   LY  M  RG  P +     ++
Sbjct: 643 ELNEELSSFSPFSAANQNIHITLIENLSLAHKADKAFE-LYADMISRGSIPELSILVHLI 701

Query: 359 RGLFRLRRVEEAKEVFN 375
           +GL R+ R EEA ++ +
Sbjct: 702 KGLLRVNRWEEALQLLD 718


>gi|115446945|ref|NP_001047252.1| Os02g0582300 [Oryza sativa Japonica Group]
 gi|50253069|dbj|BAD29317.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536783|dbj|BAF09166.1| Os02g0582300 [Oryza sativa Japonica Group]
          Length = 845

 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 128/514 (24%), Positives = 236/514 (45%), Gaps = 24/514 (4%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C   +  EA ++  +M  +G  P VV+ T +I+ YC+ G M  A +V + M+  G 
Sbjct: 296 VDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGC 355

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN  TY+ LV+G      V +A  L+ K+         ++ +   +  L+   C +G++
Sbjct: 356 KPNVWTYNALVQGFCNEGKVHKAMTLLNKM-----RACGVNPDAVTYNLLIRGQCIDGHI 410

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
              FR+   M     + +++    +I++LC+ GR   A  +   +  RG+ P+ V++NS+
Sbjct: 411 ESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSL 470

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++GLCK G    A++ LE+ +  G  P  +TY   +E LC     ++    +  ML K  
Sbjct: 471 INGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDV 530

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
              T    I +  L   +N   +      M+ + C PDV+T  T +  +C  GR+ EA  
Sbjct: 531 KPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAEN 590

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           VL +M        D + + T++ G  ++G+   A+++L Q M      P   TY  +LR 
Sbjct: 591 VLMEMSKNGVTV-DTMAYNTLMDGHASIGQTDHAVSILKQ-MTSVASVPNQFTYFILLRH 648

Query: 361 LFRLRRVEEAKE-----------------VFNCMLGIGVVADSTTYAIVIDGLCESNQLD 403
           L R+R VE+                    +F+ M     + +S TY+ +++G  E  + +
Sbjct: 649 LVRMRLVEDVLPLTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTE 708

Query: 404 EAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463
           EA      +   S   +  +Y A++   C+S +  +A   +  ++  G  P ++ Y  ++
Sbjct: 709 EATSLVSLMKEDSISLNEDIYTALVTCFCKSKRYLDAWVLVCSMIQHGFIPQLMSYQHLL 768

Query: 464 DGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            G        +A +I    R    +PD + W+++
Sbjct: 769 SGLICEGQTDKAKEIFMNSRWKDYSPDEIVWKVI 802



 Score =  178 bits (452), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 133/469 (28%), Positives = 220/469 (46%), Gaps = 22/469 (4%)

Query: 32  YTTLIHGYCRTGEMDVAYKVFDEM-RHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKL 90
           + +L+    R     +A ++F  M RH    P + TY+ ++R + R  D+ RA +    L
Sbjct: 120 FASLLAHLSRFALAPLALRLFAHMHRHAPPAPTAPTYNAVIRSLCRRADLARA-LRYLSL 178

Query: 91  WERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC 150
             R     D       F +L+   CR   V+    + + MP      +  +   +I+ LC
Sbjct: 179 MVRSGWRPDAYT----FNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLC 234

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
            +GR   A  +   M +    P +  Y ++V GLC          +L    + G+ PS  
Sbjct: 235 EAGRIDEAVELFGEMDQ----PDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTR 290

Query: 211 TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM 270
            Y  +V+  C E   ++A ++LQ M  K        C   + A C     ++ L VL  M
Sbjct: 291 AYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELM 350

Query: 271 LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCA--PDAVTFTTIIFGLLNV 328
               C+P+V T N ++ GFC  G++ +A+ +LN M A   C   PDAVT+  +I G    
Sbjct: 351 KLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRA---CGVNPDAVTYNLLIRGQCID 407

Query: 329 GRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTT 388
           G I+ A  LL ++M   G      TYNA++  L +  R ++A  +F+ +   G+  ++ T
Sbjct: 408 GHIESAFRLL-RLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVT 466

Query: 389 YAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELV 448
           +  +I+GLC+S + D A +F + +V      D Y Y++ I+ LC+     E + F+ E++
Sbjct: 467 FNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEML 526

Query: 449 DSGVTPNIVCYNVVIDGACKLSMKREAYQILR---EMRKNGLNPDAVTW 494
              V P+ V Y +VI    KL  +R    + R   EM  +G NPD VT+
Sbjct: 527 QKDVKPSTVNYTIVIH---KLLKERNYGLVARTWGEMVSSGCNPDVVTY 572



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 130/522 (24%), Positives = 223/522 (42%), Gaps = 65/522 (12%)

Query: 3   QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
            LC  + +  A +    M   G  P+  ++ +LI GYCRT ++DVA  +FD+M   G   
Sbjct: 162 SLCRRADLARALRYLSLMVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQ 221

Query: 63  NSLTYSVLVRGVLRTRDVERANVLM---------------------------FKLWERMK 95
           + ++Y+ L+ G+     ++ A  L                              +  RMK
Sbjct: 222 DVVSYATLIEGLCEAGRIDEAVELFGEMDQPDMHMYAALVKGLCNAERGEEGLLMLRRMK 281

Query: 96  EEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRN 155
            E     +  A+A +VD  CRE    E   + ++M +         C  +I++ C+ GR 
Sbjct: 282 -ELGWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRM 340

Query: 156 HGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVL 215
             A RV+ +M+ RG  P++ +YN++V G C  G   +A  LL +    G  P   TY +L
Sbjct: 341 SDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLL 400

Query: 216 VEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQC 275
           + G C +  +E A ++L+ M     +      N  + ALC      +  ++   +     
Sbjct: 401 IRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGI 460

Query: 276 QPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEAL 335
           +P+ +T N++ING CK G+ + A K L  MV+   C PD  T+++ I  L  +   QE L
Sbjct: 461 KPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAG-CTPDTYTYSSFIEHLCKMKGSQEGL 519

Query: 336 NLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG 395
           + + +++ Q+   P  V Y  V+  L + R        +  M+  G   D  TY   +  
Sbjct: 520 SFIGEML-QKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSM-- 576

Query: 396 LCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN 455
                                            +  C  G+++EA + L E+  +GVT +
Sbjct: 577 ---------------------------------RAYCIEGRLNEAENVLMEMSKNGVTVD 603

Query: 456 IVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            + YN ++DG   +     A  IL++M      P+  T+ IL
Sbjct: 604 TMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFIL 645



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 112/234 (47%), Gaps = 14/234 (5%)

Query: 277 PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALN 336
           P   T N VI   C+   +  AL+ L+ MV   +  PDA TF ++I G     ++  A +
Sbjct: 151 PTAPTYNAVIRSLCRRADLARALRYLSLMVRSGW-RPDAYTFNSLIVGYCRTNQVDVARD 209

Query: 337 LLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 396
           L +  MP RG++  +V+Y  ++ GL    R++EA E+F  M       D   YA ++ GL
Sbjct: 210 L-FDKMPLRGFAQDVVSYATLIEGLCEAGRIDEAVELFGEM----DQPDMHMYAALVKGL 264

Query: 397 CESNQLDEAK---RFWDDIVW-PSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGV 452
           C + + +E     R   ++ W PS       YAA++   CR  K  EA   L E+ + G+
Sbjct: 265 CNAERGEEGLLMLRRMKELGWRPST----RAYAAVVDFRCRERKAKEAEEMLQEMFEKGL 320

Query: 453 TPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
            P +V    VI+  CK     +A ++L  M+  G  P+  T+  L +   N G 
Sbjct: 321 APCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGK 374



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 113/243 (46%), Gaps = 18/243 (7%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M   C   R+ EA  +  +M   G   + ++Y TL+ G+   G+ D A  +  +M     
Sbjct: 576 MRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVAS 635

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVL-------------MFKLWERMKEEEDLSVNNAAF 107
           +PN  TY +L+R ++R R VE    L             +F L++ MK+ E L  N+  +
Sbjct: 636 VPNQFTYFILLRHLVRMRLVEDVLPLTPAGVWKAIELTDVFGLFDVMKKNEFLP-NSGTY 694

Query: 108 ANLVDSLCREGYVNEVFRIAEDMPQGK-SVNEEFACGHMIDSLCRSGRNHGASRVVYVMR 166
           +++++    +G   E   +   M +   S+NE+     ++   C+S R   A  +V  M 
Sbjct: 695 SSILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYTA-LVTCFCKSKRYLDAWVLVCSMI 753

Query: 167 KRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLC--GESD 224
           + G  P L+SY  ++ GL   G   +A ++        Y P E  +KV+++GL   G SD
Sbjct: 754 QHGFIPQLMSYQHLLSGLICEGQTDKAKEIFMNSRWKDYSPDEIVWKVIIDGLIKKGHSD 813

Query: 225 LEK 227
           + +
Sbjct: 814 ISR 816


>gi|224111362|ref|XP_002315826.1| predicted protein [Populus trichocarpa]
 gi|222864866|gb|EEF01997.1| predicted protein [Populus trichocarpa]
          Length = 636

 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 130/494 (26%), Positives = 236/494 (47%), Gaps = 42/494 (8%)

Query: 13  AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVR 72
           A  LF  MK  G  P++V+Y TLI GY + G +D +  +F+EM+  G  P+ +TY+ L+ 
Sbjct: 151 ARSLFEQMKKMGLTPDIVTYNTLIDGYGKIGLLDESVCLFEEMKFMGCEPDVITYNALIN 210

Query: 73  GVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQ 132
              + + + RA    F+ +  MK++ DL  N  +++ L+D+LC+EG +    +   DM +
Sbjct: 211 SFCKFKGMLRA----FEFFREMKDK-DLKPNVISYSTLIDALCKEGMMQMAIKFFVDMTR 265

Query: 133 GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMR 192
              +  EF    +ID+ C++G    A  +   M +  +  ++V+Y +++ GLC+ G    
Sbjct: 266 VGLLPNEFTYSSLIDANCKAGNLGEAFMLADEMLQEHVDLNIVTYTTLLDGLCEEGMMNE 325

Query: 193 AYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLR 252
           A +L     + G  P+   Y  L+ G      ++KA ++   M  +KD+           
Sbjct: 326 AEELFRAMGKAGVTPNLQAYTALIHGHIKVRSMDKAMELFNEM-REKDI----------- 373

Query: 253 ALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCA 312
                                  +PD++   T++ G C   ++EE   ++ +M      A
Sbjct: 374 -----------------------KPDILLWGTIVWGLCSESKLEECKIIMTEMKESGIGA 410

Query: 313 PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKE 372
            + V +TT++      G   EA+NLL + M   G    +VT+ A++ GL +   V+EA  
Sbjct: 411 -NPVIYTTLMDAYFKAGNRTEAINLLEE-MRDLGTEVTVVTFCALIDGLCKRGLVQEAIY 468

Query: 373 VFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLC 432
            F  M    +  +   Y  +IDGLC++N + +AK+ +D++   + I D   Y AMI G  
Sbjct: 469 YFGRMPDHDLQPNVAVYTALIDGLCKNNCIGDAKKLFDEMQDKNMIPDKIAYTAMIDGNL 528

Query: 433 RSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAV 492
           + G   EA++   ++++ G+  ++  Y  ++ G  +    ++A + L EM   G+ PD  
Sbjct: 529 KHGNFQEALNMRNKMMEMGIELDLYAYTSLVWGLSQCGQVQQARKFLAEMIGKGIIPDET 588

Query: 493 TWRILDKLHGNRGN 506
               L + H   GN
Sbjct: 589 LCTRLLRKHYELGN 602



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 121/456 (26%), Positives = 205/456 (44%), Gaps = 50/456 (10%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C    +  A + F +MK +   PNV+SY+TLI   C+ G M +A K F +M   G+
Sbjct: 209 INSFCKFKGMLRAFEFFREMKDKDLKPNVISYSTLIDALCKEGMMQMAIKFFVDMTRVGL 268

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           LPN  TYS L+    +  ++  A    F L + M +E  + +N   +  L+D LC EG +
Sbjct: 269 LPNEFTYSSLIDANCKAGNLGEA----FMLADEMLQEH-VDLNIVTYTTLLDGLCEEGMM 323

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           NE                                   A  +   M K G+TP+L +Y ++
Sbjct: 324 NE-----------------------------------AEELFRAMGKAGVTPNLQAYTAL 348

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM----L 236
           +HG  K     +A +L  E  +    P    +  +V GLC ES LE+ + ++  M    +
Sbjct: 349 IHGHIKVRSMDKAMELFNEMREKDIKPDILLWGTIVWGLCSESKLEECKIIMTEMKESGI 408

Query: 237 SKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIE 296
               V  T + + Y +A     N TE +N+L  M     +  V+T   +I+G CK G ++
Sbjct: 409 GANPVIYTTLMDAYFKA----GNRTEAINLLEEMRDLGTEVTVVTFCALIDGLCKRGLVQ 464

Query: 297 EALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
           EA+     M       P+   +T +I GL     I +A   L+  M  +   P  + Y A
Sbjct: 465 EAIYYFGRMPDHDL-QPNVAVYTALIDGLCKNNCIGDA-KKLFDEMQDKNMIPDKIAYTA 522

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416
           ++ G  +    +EA  + N M+ +G+  D   Y  ++ GL +  Q+ +A++F  +++   
Sbjct: 523 MIDGNLKHGNFQEALNMRNKMMEMGIELDLYAYTSLVWGLSQCGQVQQARKFLAEMIGKG 582

Query: 417 NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGV 452
            I D  +   +++     G I EA+    ELV+ G+
Sbjct: 583 IIPDETLCTRLLRKHYELGNIDEAIELQNELVEKGL 618



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 119/512 (23%), Positives = 227/512 (44%), Gaps = 47/512 (9%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           L  L  +  A + F  M     +P   S    +H   + GE D++   F +M   G+ P 
Sbjct: 72  LVELGMLEAAGQCFLRMTKFRVLPKARSCNAFLHRLSKAGEGDLSRDFFRDMVGAGIAPT 131

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             TY++++  V +  D+  A      L+E+MK +  L+ +   +  L+D   + G ++E 
Sbjct: 132 VFTYNIMIGHVCKEGDMLTAR----SLFEQMK-KMGLTPDIVTYNTLIDGYGKIGLLDES 186

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             + E+M       +      +I+S C+      A      M+ + L P+++SY++++  
Sbjct: 187 VCLFEEMKFMGCEPDVITYNALINSFCKFKGMLRAFEFFREMKDKDLKPNVISYSTLIDA 246

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LCK G    A +   +  + G LP+E TY  L++  C   +L +A     FML+ +    
Sbjct: 247 LCKEGMMQMAIKFFVDMTRVGLLPNEFTYSSLIDANCKAGNLGEA-----FMLADE---- 297

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                                     MLQ     +++T  T+++G C+ G + EA ++  
Sbjct: 298 --------------------------MLQEHVDLNIVTYTTLLDGLCEEGMMNEAEELFR 331

Query: 304 DMVAGKF-CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
            M  GK    P+   +T +I G + V  + +A+  L+  M ++   P I+ +  ++ GL 
Sbjct: 332 AM--GKAGVTPNLQAYTALIHGHIKVRSMDKAME-LFNEMREKDIKPDILLWGTIVWGLC 388

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
              ++EE K +   M   G+ A+   Y  ++D   ++    EA    +++          
Sbjct: 389 SESKLEECKIIMTEMKESGIGANPVIYTTLMDAYFKAGNRTEAINLLEEMRDLGTEVTVV 448

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
            + A+I GLC+ G + EA+++   + D  + PN+  Y  +IDG CK +   +A ++  EM
Sbjct: 449 TFCALIDGLCKRGLVQEAIYYFGRMPDHDLQPNVAVYTALIDGLCKNNCIGDAKKLFDEM 508

Query: 483 RKNGLNPDAVTWRIL---DKLHGNRGNDFGLR 511
           +   + PD + +  +   +  HGN      +R
Sbjct: 509 QDKNMIPDKIAYTAMIDGNLKHGNFQEALNMR 540



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 84/187 (44%), Gaps = 1/187 (0%)

Query: 311 CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEA 370
           C P    F  +   L+ +G + EA    +  M +    P   + NA L  L +    + +
Sbjct: 58  CVPGFGVFDALFSVLVELGML-EAAGQCFLRMTKFRVLPKARSCNAFLHRLSKAGEGDLS 116

Query: 371 KEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKG 430
           ++ F  M+G G+     TY I+I  +C+   +  A+  ++ +       D   Y  +I G
Sbjct: 117 RDFFRDMVGAGIAPTVFTYNIMIGHVCKEGDMLTARSLFEQMKKMGLTPDIVTYNTLIDG 176

Query: 431 LCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD 490
             + G + E+V    E+   G  P+++ YN +I+  CK      A++  REM+   L P+
Sbjct: 177 YGKIGLLDESVCLFEEMKFMGCEPDVITYNALINSFCKFKGMLRAFEFFREMKDKDLKPN 236

Query: 491 AVTWRIL 497
            +++  L
Sbjct: 237 VISYSTL 243


>gi|147841407|emb|CAN66681.1| hypothetical protein VITISV_005087 [Vitis vinifera]
          Length = 882

 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 139/507 (27%), Positives = 241/507 (47%), Gaps = 10/507 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D L     V EA  L   M  RG   +VV YT L+ G  + G  + A  +F  +    +
Sbjct: 164 IDSLFKEGNVAEAFVLQGRMVVRGIGFDVVVYTALMDGLFKAGMANNAEDMFQVLLEESL 223

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +PN +TYS L+ G  +  DV +  +L+ ++     EE+ +  N   ++++VD   ++G +
Sbjct: 224 VPNCVTYSALIDGHCKLGDVNKGELLLQEM-----EEKHIFPNVIVYSSIVDGYTKKGLL 278

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           NE   +   M Q   +   F  G +ID   ++ +   A  +   M+ RGL  +    +S 
Sbjct: 279 NEAMDVMRKMVQRNILPNVFVYGTLIDGYFKADQRGIALDLFKEMKSRGLEENNFVIDSF 338

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           V+ L + G    A +L ++ +  G LP    Y  +++G         A  + Q M  K  
Sbjct: 339 VNNLKRSGRMEEADELFKDMMSRGLLPDRVNYTSMMDGFFKAGKESDAFNIAQEMTEKSS 398

Query: 241 VDRTRICNIYLRALC-LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                  N+ +  L  L K  +E  +    M Q    PD  T NT+IN +CK G +  AL
Sbjct: 399 GFDVVAYNVLINGLFKLGKYESESFHT--GMRQLGLAPDSATFNTMINAYCKEGNLGNAL 456

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           K+LN+M +     P+++T   ++  L   G I++ ++LL  ++   G+ P   T+ AVL 
Sbjct: 457 KLLNEMKSYGL-KPNSITCNILVQRLCAAGEIEKTMDLLNDMLVM-GFHPTPTTHKAVLD 514

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
              + RR +      + ++G+GV  D +TY  +I   C    +  A   + D++    + 
Sbjct: 515 ASSKSRRADVILHXHDQLVGMGVKLDLSTYNTLISTFCRLGMIRRATLVFKDMMGKGILA 574

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           D   Y A+I G C S  + +A     +++  GV+PN+  YN+++ G     + +EA  ++
Sbjct: 575 DIITYNALIHGYCISSHLKKAFAVHSQMLTEGVSPNVETYNILLGGLSAARLIKEAAGLV 634

Query: 480 REMRKNGLNPDAVTWRILDKLHGNRGN 506
            +M++ GL P+A T+ IL   HG  GN
Sbjct: 635 NQMKERGLVPNATTYDILVSGHGKIGN 661



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 136/531 (25%), Positives = 248/531 (46%), Gaps = 45/531 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C L  V +   L  +M+ +   PNV+ Y++++ GY + G ++ A  V  +M    +
Sbjct: 234 IDGHCKLGDVNKGELLLQEMEEKHIFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQRNI 293

Query: 61  LPNSLTYSVLV--------RGV-------LRTRDVERANVLM------FKLWERMKEEED 99
           LPN   Y  L+        RG+       +++R +E  N ++       K   RM+E ++
Sbjct: 294 LPNVFVYGTLIDGYFKADQRGIALDLFKEMKSRGLEENNFVIDSFVNNLKRSGRMEEADE 353

Query: 100 LSVNNAA---------FANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC 150
           L  +  +         + +++D   + G  ++ F IA++M +  S  +  A   +I+ L 
Sbjct: 354 LFKDMMSRGLLPDRVNYTSMMDGFFKAGKESDAFNIAQEMTEKSSGFDVVAYNVLINGLF 413

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
           + G+    S     MR+ GL P   ++N++++  CK G    A +LL E   +G  P+  
Sbjct: 414 KLGKYESES-FHTGMRQLGLAPDSATFNTMINAYCKEGNLGNALKLLNEMKSYGLKPNSI 472

Query: 211 TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM 270
           T  +LV+ LC   ++EK   +L  ML              L A    +    +L+    +
Sbjct: 473 TCNILVQRLCAAGEIEKTMDLLNDMLVMGFHPTPTTHKAVLDASSKSRRADVILHXHDQL 532

Query: 271 LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR 330
           +    + D+ T NT+I+ FC++G I  A  V  DM+ GK    D +T+  +I G      
Sbjct: 533 VGMGVKLDLSTYNTLISTFCRLGMIRRATLVFKDMM-GKGILADIITYNALIHGYCISSH 591

Query: 331 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYA 390
           +++A  +  Q++ + G SP + TYN +L GL   R ++EA  + N M   G+V ++TTY 
Sbjct: 592 LKKAFAVHSQMLTE-GVSPNVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYD 650

Query: 391 IVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 450
           I++ G  +   + E  + + +++    +     Y  +I    +  K+ +A   + E+   
Sbjct: 651 ILVSGHGKIGNMKECVKLYCEMITKGFVPKTRTYNVLISCFAKGKKMSQAKELMQEMQVR 710

Query: 451 GVTPNIVCYNVVIDGACKL--------SMKR----EAYQILREMRKNGLNP 489
           G+ PN   Y+++I G  KL        S+KR    EA ++  EM + G  P
Sbjct: 711 GIPPNSSTYDILICGWYKLSKQPELNKSLKRSYQAEAKRLFEEMNEKGFIP 761



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 126/497 (25%), Positives = 233/497 (46%), Gaps = 43/497 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C    +  A +L   MK+ G  P++V+Y TL++G+C+ G++  A K+  E+    +
Sbjct: 24  IDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAKKLMGEISLVNL 83

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +TY+ L+    +++ +E A      +++ M   + L  +   +  +++ LC+ G V
Sbjct: 84  EPNVITYTTLIDAYCKSQCLEDA----LYMYDEMT-VKSLVPDVVTYTCIMNGLCKSGKV 138

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E   +  +M +   V   F+   +IDSL + G    A  +   M  RG+   +V Y ++
Sbjct: 139 EEAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRGIGFDVVVYTAL 198

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GL K G    A  + +  ++   +P+  TY  L++G C   D+ K   +LQ M  K  
Sbjct: 199 MDGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQEMEEKH- 257

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                      +F       P+VI  +++++G+ K G + EA+ 
Sbjct: 258 ---------------------------IF-------PNVIVYSSIVDGYTKKGLLNEAMD 283

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           V+  MV  +   P+   + T+I G     +   AL+ L++ M  RG        ++ +  
Sbjct: 284 VMRKMVQ-RNILPNVFVYGTLIDGYFKADQRGIALD-LFKEMKSRGLEENNFVIDSFVNN 341

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L R  R+EEA E+F  M+  G++ D   Y  ++DG  ++ +  +A     ++   S+  D
Sbjct: 342 LKRSGRMEEADELFKDMMSRGLLPDRVNYTSMMDGFFKAGKESDAFNIAQEMTEKSSGFD 401

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              Y  +I GL + GK +E+  F   +   G+ P+   +N +I+  CK      A ++L 
Sbjct: 402 VVAYNVLINGLFKLGK-YESESFHTGMRQLGLAPDSATFNTMINAYCKEGNLGNALKLLN 460

Query: 481 EMRKNGLNPDAVTWRIL 497
           EM+  GL P+++T  IL
Sbjct: 461 EMKSYGLKPNSITCNIL 477



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/343 (26%), Positives = 157/343 (45%), Gaps = 37/343 (10%)

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
           +ID  CR+G    A  ++  M+  G  P +V+YN++++G CK G    A +L+ E     
Sbjct: 23  LIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAKKLMGEISLVN 82

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL 264
             P+  TY  L++  C    LE A  +   M  K  V                       
Sbjct: 83  LEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLV----------------------- 119

Query: 265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 324
                       PDV+T   ++NG CK G++EEA  V  +M       P+  ++ T+I  
Sbjct: 120 ------------PDVVTYTCIMNGLCKSGKVEEAKSVFREMEEVG-VVPNRFSYATLIDS 166

Query: 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 384
           L   G + EA  +L   M  RG    +V Y A++ GLF+      A+++F  +L   +V 
Sbjct: 167 LFKEGNVAEAF-VLQGRMVVRGIGFDVVVYTALMDGLFKAGMANNAEDMFQVLLEESLVP 225

Query: 385 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFL 444
           +  TY+ +IDG C+   +++ +    ++       +  VY++++ G  + G ++EA+  +
Sbjct: 226 NCVTYSALIDGHCKLGDVNKGELLLQEMEEKHIFPNVIVYSSIVDGYTKKGLLNEAMDVM 285

Query: 445 YELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
            ++V   + PN+  Y  +IDG  K   +  A  + +EM+  GL
Sbjct: 286 RKMVQRNILPNVFVYGTLIDGYFKADQRGIALDLFKEMKSRGL 328



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 85/325 (26%), Positives = 158/325 (48%), Gaps = 37/325 (11%)

Query: 173 SLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVL 232
           S+  +N ++ G C++G   RA +LLE     G  P   TY  L+ G C   DL  A+K++
Sbjct: 16  SVEHFNVLIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAKKLM 75

Query: 233 QFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKM 292
                                         L+N+         +P+VIT  T+I+ +CK 
Sbjct: 76  --------------------------GEISLVNL---------EPNVITYTTLIDAYCKS 100

Query: 293 GRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIV 352
             +E+AL + ++M   K   PD VT+T I+ GL   G+++EA ++ ++ M + G  P   
Sbjct: 101 QCLEDALYMYDEMTV-KSLVPDVVTYTCIMNGLCKSGKVEEAKSV-FREMEEVGVVPNRF 158

Query: 353 TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI 412
           +Y  ++  LF+   V EA  +   M+  G+  D   Y  ++DGL ++   + A+  +  +
Sbjct: 159 SYATLIDSLFKEGNVAEAFVLQGRMVVRGIGFDVVVYTALMDGLFKAGMANNAEDMFQVL 218

Query: 413 VWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMK 472
           +  S + +   Y+A+I G C+ G +++    L E+ +  + PN++ Y+ ++DG  K  + 
Sbjct: 219 LEESLVPNCVTYSALIDGHCKLGDVNKGELLLQEMEEKHIFPNVIVYSSIVDGYTKKGLL 278

Query: 473 REAYQILREMRKNGLNPDAVTWRIL 497
            EA  ++R+M +  + P+   +  L
Sbjct: 279 NEAMDVMRKMVQRNILPNVFVYGTL 303



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 116/225 (51%), Gaps = 2/225 (0%)

Query: 282 LNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQV 341
            N +I+G+C+ G I  A+++L  M   +  APD VT+ T++ G   +G +  A  L+ ++
Sbjct: 20  FNVLIDGYCRNGEISRAVELLEGMKT-EGPAPDIVTYNTLMNGFCKIGDLFTAKKLMGEI 78

Query: 342 MPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ 401
                  P ++TY  ++    + + +E+A  +++ M    +V D  TY  +++GLC+S +
Sbjct: 79  -SLVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGLCKSGK 137

Query: 402 LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNV 461
           ++EAK  + ++     + + + YA +I  L + G + EA      +V  G+  ++V Y  
Sbjct: 138 VEEAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRGIGFDVVVYTA 197

Query: 462 VIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           ++DG  K  M   A  + + + +  L P+ VT+  L   H   G+
Sbjct: 198 LMDGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGD 242



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 115/253 (45%), Gaps = 17/253 (6%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +   C L  +  A  +F DM  +G + ++++Y  LIHGYC +  +  A+ V  +M   GV
Sbjct: 548 ISTFCRLGMIRRATLVFKDMMGKGILADIITYNALIHGYCISSHLKKAFAVHSQMLTEGV 607

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN  TY++L+ G+   R ++ A  L+ ++ ER      L  N   +  LV    + G +
Sbjct: 608 SPNVETYNILLGGLSAARLIKEAAGLVNQMKER-----GLVPNATTYDILVSGHGKIGNM 662

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E  ++  +M     V +      +I    +  +   A  ++  M+ RG+ P+  +Y+ +
Sbjct: 663 KECVKLYCEMITKGFVPKTRTYNVLISCFAKGKKMSQAKELMQEMQVRGIPPNSSTYDIL 722

Query: 181 VHGLCK-------HGGCMRAYQ-----LLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKA 228
           + G  K       +    R+YQ     L EE  + G++P E+T   +   L        A
Sbjct: 723 ICGWYKLSKQPELNKSLKRSYQAEAKRLFEEMNEKGFIPCENTLACISFTLAKPGKKADA 782

Query: 229 RKVLQFMLSKKDV 241
           +++L  +  KK V
Sbjct: 783 QRILNKLYKKKTV 795



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 79/162 (48%), Gaps = 13/162 (8%)

Query: 4   LCGLSRVG---EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           + G  ++G   E  KL+ +M ++G VP   +Y  LI  + +  +M  A ++  EM+  G+
Sbjct: 653 VSGHGKIGNMKECVKLYCEMITKGFVPKTRTYNVLISCFAKGKKMSQAKELMQEMQVRGI 712

Query: 61  LPNSLTYSVLVRGVLR-------TRDVERA-NVLMFKLWERMKEEEDLSVNNAAFANLVD 112
            PNS TY +L+ G  +        + ++R+      +L+E M E+  +   N   A +  
Sbjct: 713 PPNSSTYDILICGWYKLSKQPELNKSLKRSYQAEAKRLFEEMNEKGFIPCEN-TLACISF 771

Query: 113 SLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGR 154
           +L + G   +  RI   + + K+V E  A G + +S  R G+
Sbjct: 772 TLAKPGKKADAQRILNKLYKKKTVQELLA-GVLWESRERKGK 812


>gi|225427506|ref|XP_002263778.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g31840-like [Vitis vinifera]
          Length = 1131

 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 127/460 (27%), Positives = 236/460 (51%), Gaps = 17/460 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           MD    +  +G+A +++  M   G  PNVV+Y+ LI+G CR G +  A  VF ++   G+
Sbjct: 352 MDAYVRVGDLGKAIEVYTRMLKEGISPNVVTYSILINGLCRNGRVLEACGVFGQILKQGL 411

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ LTYS L+ G  ++ ++ R    ++ +  R     D+ V +     L++ L R+G +
Sbjct: 412 EPSVLTYSSLIDGFCKSENL-RDGFGLYGIMLRKGHVPDVVVCSM----LINGLSRQGMM 466

Query: 121 NEVFRIA-EDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           +E  R   + + +G ++N  +    +ID   R  R     ++  +M    + P +V+Y  
Sbjct: 467 DEALRFFFQAVKRGLTLNN-YLFNALIDGCFRLKRTRDGLKMYILMGMYKVIPDVVTYTV 525

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           +V GL + G    A  L  + ++ G+ P    Y  L++G C + D     ++ + M S  
Sbjct: 526 LVKGLAEQGRLDEALALFFQLLKKGFSPDHIIYCTLIDGFCKKRDPATGLQIFKLMQSNG 585

Query: 240 DVDRTRICNI----YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 295
                 I N+    + R  C ++N  ELL  ++   +   +PD++T NT+I G+C +   
Sbjct: 586 IFPDICIYNVLINMFFREGC-VENVLELLREII---KYGLEPDIVTYNTMICGYCSLKIF 641

Query: 296 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN 355
            +A+K+   +  G+   P+A+TFT +I      GR+ +A+ L++  M +RG  P I+TY+
Sbjct: 642 SKAIKLFEVLKCGR-TQPNAITFTILIDAYCKDGRMDDAM-LIFSSMLERGPEPNILTYS 699

Query: 356 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP 415
            ++ G F+    E A E++  MLG  V  +  +Y+I+IDGLC+   ++EA   +   +  
Sbjct: 700 CLIDGYFKTENTESAFELYEKMLGDRVSPNIVSYSILIDGLCKKGLMEEASLAFQCAIGR 759

Query: 416 SNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN 455
             + D   Y  +I+G C+ G++ EA+     ++ +G+ P+
Sbjct: 760 HLLPDVIAYGILIRGYCKVGRLAEAMMLYDHMLVNGIMPD 799



 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 121/495 (24%), Positives = 240/495 (48%), Gaps = 9/495 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSR-GHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           LC  +++G A   FFDM  R G  PN+V+++TLI+ YC+   +D A+ +++ M   G++P
Sbjct: 250 LCMGNQIGVASD-FFDMMVRSGPSPNLVTFSTLINVYCKELRLDEAFSLYNLMIEKGIVP 308

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           + + YS+L+ G+ R   +E  N L       M     + ++   F++++D+  R G + +
Sbjct: 309 DLVIYSILINGLFRAGKLEEGNSLF-----SMALARGVKMDVVIFSSIMDAYVRVGDLGK 363

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
              +   M +            +I+ LCR+GR   A  V   + K+GL PS+++Y+S++ 
Sbjct: 364 AIEVYTRMLKEGISPNVVTYSILINGLCRNGRVLEACGVFGQILKQGLEPSVLTYSSLID 423

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           G CK       + L    ++ G++P      +L+ GL  +  +++A +     + +    
Sbjct: 424 GFCKSENLRDGFGLYGIMLRKGHVPDVVVCSMLINGLSRQGMMDEALRFFFQAVKRGLTL 483

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
              + N  +     +K   + L + + M   +  PDV+T   ++ G  + GR++EAL + 
Sbjct: 484 NNYLFNALIDGCFRLKRTRDGLKMYILMGMYKVIPDVVTYTVLVKGLAEQGRLDEALALF 543

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
             ++   F +PD + + T+I G          L  ++++M   G  P I  YN ++   F
Sbjct: 544 FQLLKKGF-SPDHIIYCTLIDGFCKKRDPATGLQ-IFKLMQSNGIFPDICIYNVLINMFF 601

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
           R   VE   E+   ++  G+  D  TY  +I G C      +A + ++ +       +  
Sbjct: 602 REGCVENVLELLREIIKYGLEPDIVTYNTMICGYCSLKIFSKAIKLFEVLKCGRTQPNAI 661

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
            +  +I   C+ G++ +A+     +++ G  PNI+ Y+ +IDG  K      A+++  +M
Sbjct: 662 TFTILIDAYCKDGRMDDAMLIFSSMLERGPEPNILTYSCLIDGYFKTENTESAFELYEKM 721

Query: 483 RKNGLNPDAVTWRIL 497
             + ++P+ V++ IL
Sbjct: 722 LGDRVSPNIVSYSIL 736



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 118/495 (23%), Positives = 230/495 (46%), Gaps = 16/495 (3%)

Query: 3   QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           Q   L  +GE H  F   ++ G  P+ V Y+ L+H YCR G +D A   F  M   GV  
Sbjct: 118 QFGNLEVLGEFHGSF---RNYGSNPSTV-YSFLLHCYCRNGMVDRAVDTFAWMSKMGVSI 173

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           +    S ++  ++   D +R +V++       +  E++      +  + +S  + G V +
Sbjct: 174 SHYAASEMLDLLI---DSDRIDVIL-------ENYEEMCKGLGVYEFVFNSFLKRGEVEK 223

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
                  + +   V +   C  ++  LC   +   AS    +M + G +P+LV+++++++
Sbjct: 224 GLNFHRALVERGLVPKIVDCNKILKGLCMGNQIGVASDFFDMMVRSGPSPNLVTFSTLIN 283

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
             CK      A+ L    I+ G +P    Y +L+ GL     LE+   +    L++    
Sbjct: 284 VYCKELRLDEAFSLYNLMIEKGIVPDLVIYSILINGLFRAGKLEEGNSLFSMALARGVKM 343

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
              I +  + A   + +  + + V   ML+    P+V+T + +ING C+ GR+ EA  V 
Sbjct: 344 DVVIFSSIMDAYVRVGDLGKAIEVYTRMLKEGISPNVVTYSILINGLCRNGRVLEACGVF 403

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
             ++  +   P  +T++++I G      +++   L Y +M ++G+ P +V  + ++ GL 
Sbjct: 404 GQILK-QGLEPSVLTYSSLIDGFCKSENLRDGFGL-YGIMLRKGHVPDVVVCSMLINGLS 461

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
           R   ++EA   F   +  G+  ++  +  +IDG     +  +  + +  +     I D  
Sbjct: 462 RQGMMDEALRFFFQAVKRGLTLNNYLFNALIDGCFRLKRTRDGLKMYILMGMYKVIPDVV 521

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
            Y  ++KGL   G++ EA+   ++L+  G +P+ + Y  +IDG CK        QI + M
Sbjct: 522 TYTVLVKGLAEQGRLDEALALFFQLLKKGFSPDHIIYCTLIDGFCKKRDPATGLQIFKLM 581

Query: 483 RKNGLNPDAVTWRIL 497
           + NG+ PD   + +L
Sbjct: 582 QSNGIFPDICIYNVL 596



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 89/213 (41%), Gaps = 40/213 (18%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C L    +A KLF  +K     PN +++T LI  YC+ G MD A  +F  M   G  PN 
Sbjct: 636 CSLKIFSKAIKLFEVLKCGRTQPNAITFTILIDAYCKDGRMDDAMLIFSSMLERGPEPNI 695

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           LTYS L+ G  +T + E A    F+L+E+M  +  +S N  +++ L              
Sbjct: 696 LTYSCLIDGYFKTENTESA----FELYEKMLGDR-VSPNIVSYSIL-------------- 736

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
                                ID LC+ G    AS        R L P +++Y  ++ G 
Sbjct: 737 ---------------------IDGLCKKGLMEEASLAFQCAIGRHLLPDVIAYGILIRGY 775

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVE 217
           CK G    A  L +  +  G +P +   K L E
Sbjct: 776 CKVGRLAEAMMLYDHMLVNGIMPDDLLQKALAE 808



 Score = 43.9 bits (102), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 36/72 (50%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    + EA   F     R  +P+V++Y  LI GYC+ G +  A  ++D M   G+
Sbjct: 737 IDGLCKKGLMEEASLAFQCAIGRHLLPDVIAYGILIRGYCKVGRLAEAMMLYDHMLVNGI 796

Query: 61  LPNSLTYSVLVR 72
           +P+ L    L  
Sbjct: 797 MPDDLLQKALAE 808


>gi|302806388|ref|XP_002984944.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
 gi|300147530|gb|EFJ14194.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
          Length = 468

 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 112/356 (31%), Positives = 180/356 (50%), Gaps = 4/356 (1%)

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
           ++ SL ++G    A  V   M+     PSLV+YN +++  C  G   +A  L +   +  
Sbjct: 16  VVQSLAKAGMLAQALEVFETMKSESCVPSLVTYNVLINSRCNAGEFGKALDLFQSMKREK 75

Query: 205 YL-PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTEL 263
            + P   TY  L+ GLC   + E ARK+L  M  K         +  +++L     P E 
Sbjct: 76  RVEPDRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYSSIIKSLVKEAKPEES 135

Query: 264 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF 323
             VL  M+   C PDV   N V+ GF +   +E+A +V   MV   +  PD V++  +I 
Sbjct: 136 YKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGY-KPDNVSYHILIH 194

Query: 324 GLLNVGRIQEALNLLYQV-MPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGV 382
           GL  +G++ E+L +L ++ M   GY P ++T++ ++ GL R   +E+A EVF  ML  G 
Sbjct: 195 GLAKIGKLDESLKILSEMAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGC 254

Query: 383 VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVH 442
             +  TY  +I GLC + ++ +A+  ++ +       D   Y ++I G C+ G + EA  
Sbjct: 255 KPNKYTYTTLIAGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEK 314

Query: 443 FLYELVD-SGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
              E+   +G+ P IV +N +IDG CKL     A +++ EM   GL  D  T+RIL
Sbjct: 315 LYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADTCTYRIL 370



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 127/478 (26%), Positives = 221/478 (46%), Gaps = 46/478 (9%)

Query: 10  VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEM-RHCGVLPNSLTYS 68
           + +A ++F  MKS   VP++V+Y  LI+  C  GE   A  +F  M R   V P+  TY+
Sbjct: 26  LAQALEVFETMKSESCVPSLVTYNVLINSRCNAGEFGKALDLFQSMKREKRVEPDRWTYN 85

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
            L+ G+  + + E A  L+ ++ ++     +++ N   +++++ SL +E    E +++ E
Sbjct: 86  TLISGLCSSGNTEGARKLLSEMRDK-----NIAANVFTYSSIIKSLVKEAKPEESYKVLE 140

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
           +M       + FA   ++    RS     A  V   M + G  P  VSY+ ++HGL K G
Sbjct: 141 EMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHILIHGLAKIG 200

Query: 189 GCMRAYQLLEEGI--QFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRI 246
               + ++L E      GY+P+  T+  L+ GLC   +LEKA                  
Sbjct: 201 KLDESLKILSEMAMRAAGYVPNVITFSTLIHGLCRTGELEKA------------------ 242

Query: 247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV 306
                            L V   ML+  C+P+  T  T+I G C+  ++ +A ++   M 
Sbjct: 243 -----------------LEVFGSMLEAGCKPNKYTYTTLIAGLCRAEKVIQARELFEKMT 285

Query: 307 AGKFC-APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLR 365
             + C  PDAV + ++I G    G + EA  L  ++    G  P IVT+N ++ G  +L 
Sbjct: 286 --QACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLG 343

Query: 366 RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYA 425
           ++  A E+   M   G+ AD+ TY I+I GL  + +LDEA   +  +     + D     
Sbjct: 344 KLGRANELVAEMGTKGLAADTCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCV 403

Query: 426 AMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           + + GLC++G I +A         SG  PN   + ++ +   KL    +A +++   +
Sbjct: 404 SFVGGLCKTGNIDQAYAVFEATRKSGAVPNPETFRILSESLIKLGRVEDAQKLMEPAK 461



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 118/473 (24%), Positives = 214/473 (45%), Gaps = 46/473 (9%)

Query: 31  SYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKL 90
           +Y  ++    + G +  A +VF+ M+    +P+ +TY+VL+                   
Sbjct: 12  AYDFVVQSLAKAGMLAQALEVFETMKSESCVPSLVTYNVLI------------------- 52

Query: 91  WERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVN-EEFACGHMIDSL 149
                                +S C  G   +   + + M + K V  + +    +I  L
Sbjct: 53  ---------------------NSRCNAGEFGKALDLFQSMKREKRVEPDRWTYNTLISGL 91

Query: 150 CRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSE 209
           C SG   GA +++  MR + +  ++ +Y+SI+  L K      +Y++LEE +  G  P  
Sbjct: 92  CSSGNTEGARKLLSEMRDKNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDV 151

Query: 210 HTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVF 269
             +  +++G    +++EKAR+V Q M+           +I +  L  I    E L +L  
Sbjct: 152 FAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSE 211

Query: 270 MLQTQCQ--PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLN 327
           M        P+VIT +T+I+G C+ G +E+AL+V   M+    C P+  T+TT+I GL  
Sbjct: 212 MAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAG-CKPNKYTYTTLIAGLCR 270

Query: 328 VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG-IGVVADS 386
             ++ +A  L ++ M Q    P  V YN+++ G  +   ++EA++++  M G  G+    
Sbjct: 271 AEKVIQAREL-FEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTI 329

Query: 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE 446
            T+  +IDG C+  +L  A     ++       D   Y  +I GL R+ K+ EA+    +
Sbjct: 330 VTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADTCTYRILIAGLSRATKLDEALEVYKQ 389

Query: 447 LVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
           + +     + V     + G CK     +AY +    RK+G  P+  T+RIL +
Sbjct: 390 MREKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFEATRKSGAVPNPETFRILSE 442



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 114/447 (25%), Positives = 190/447 (42%), Gaps = 44/447 (9%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHV-PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCG 59
           ++  C     G+A  LF  MK    V P+  +Y TLI G C +G  + A K+  EMR   
Sbjct: 52  INSRCNAGEFGKALDLFQSMKREKRVEPDRWTYNTLISGLCSSGNTEGARKLLSEMRDKN 111

Query: 60  VLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGY 119
           +  N  TYS +++                                        SL +E  
Sbjct: 112 IAANVFTYSSIIK----------------------------------------SLVKEAK 131

Query: 120 VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
             E +++ E+M       + FA   ++    RS     A  V   M + G  P  VSY+ 
Sbjct: 132 PEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHI 191

Query: 180 IVHGLCKHGGCMRAYQLLEEGI--QFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
           ++HGL K G    + ++L E      GY+P+  T+  L+ GLC   +LEKA +V   ML 
Sbjct: 192 LIHGLAKIGKLDESLKILSEMAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLE 251

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
                        +  LC  +   +   +   M Q    PD +  N++I G+CK G ++E
Sbjct: 252 AGCKPNKYTYTTLIAGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDE 311

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           A K+  +M  G    P  VTF T+I G   +G++  A N L   M  +G +    TY  +
Sbjct: 312 AEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRA-NELVAEMGTKGLAADTCTYRIL 370

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 417
           + GL R  +++EA EV+  M     + D  +    + GLC++  +D+A   ++       
Sbjct: 371 IAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFEATRKSGA 430

Query: 418 IHDNYVYAAMIKGLCRSGKIHEAVHFL 444
           + +   +  + + L + G++ +A   +
Sbjct: 431 VPNPETFRILSESLIKLGRVEDAQKLM 457



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 87/333 (26%), Positives = 160/333 (48%), Gaps = 38/333 (11%)

Query: 176 SYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM 235
           +Y+ +V  L K G   +A ++ E       +PS  TY VL+   C   +  KA  + Q M
Sbjct: 12  AYDFVVQSLAKAGMLAQALEVFETMKSESCVPSLVTYNVLINSRCNAGEFGKALDLFQSM 71

Query: 236 LSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 295
             +K V                                  +PD  T NT+I+G C  G  
Sbjct: 72  KREKRV----------------------------------EPDRWTYNTLISGLCSSGNT 97

Query: 296 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN 355
           E A K+L++M   K  A +  T+++II  L+   + +E+  +L ++M   G +P +  +N
Sbjct: 98  EGARKLLSEM-RDKNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAA-GCNPDVFAFN 155

Query: 356 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP 415
            V++G  R   +E+A+EV+  M+  G   D+ +Y I+I GL +  +LDE+ +   ++   
Sbjct: 156 GVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMAMR 215

Query: 416 SN--IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKR 473
           +   + +   ++ +I GLCR+G++ +A+     ++++G  PN   Y  +I G C+     
Sbjct: 216 AAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLIAGLCRAEKVI 275

Query: 474 EAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           +A ++  +M +  + PDAV +  L   +  RG+
Sbjct: 276 QARELFEKMTQACIPPDAVAYNSLIAGYCKRGS 308



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 115/235 (48%), Gaps = 5/235 (2%)

Query: 270 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG 329
           M + +C       + V+    K G + +AL+V   M + + C P  VT+  +I    N G
Sbjct: 1   MSKAKCAIGGDAYDFVVQSLAKAGMLAQALEVFETMKS-ESCVPSLVTYNVLINSRCNAG 59

Query: 330 RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTY 389
              +AL+L   +  ++   P   TYN ++ GL      E A+++ + M    + A+  TY
Sbjct: 60  EFGKALDLFQSMKREKRVEPDRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTY 119

Query: 390 AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449
           + +I  L +  + +E+ +  ++++      D + +  +++G  RS  + +A      +V+
Sbjct: 120 SSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVE 179

Query: 450 SGVTPNIVCYNVVIDGACKLSMKREAYQILRE--MRKNGLNPDAVTWRILDKLHG 502
           SG  P+ V Y+++I G  K+    E+ +IL E  MR  G  P+ +T+  L  +HG
Sbjct: 180 SGYKPDNVSYHILIHGLAKIGKLDESLKILSEMAMRAAGYVPNVITFSTL--IHG 232



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 107/231 (46%), Gaps = 7/231 (3%)

Query: 6   GLSRVGEAHK---LFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           GL R GE  K   +F  M   G  PN  +YTTLI G CR  ++  A ++F++M    + P
Sbjct: 232 GLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLIAGLCRAEKVIQARELFEKMTQACIPP 291

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           +++ Y+ L+ G  +   ++ A     KL+  M     L      F  L+D  C+ G +  
Sbjct: 292 DAVAYNSLIAGYCKRGSMDEAE----KLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGR 347

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
              +  +M       +      +I  L R+ +   A  V   MR++      VS  S V 
Sbjct: 348 ANELVAEMGTKGLAADTCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFVG 407

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQ 233
           GLCK G   +AY + E   + G +P+  T+++L E L     +E A+K+++
Sbjct: 408 GLCKTGNIDQAYAVFEATRKSGAVPNPETFRILSESLIKLGRVEDAQKLME 458


>gi|242038895|ref|XP_002466842.1| hypothetical protein SORBIDRAFT_01g015050 [Sorghum bicolor]
 gi|241920696|gb|EER93840.1| hypothetical protein SORBIDRAFT_01g015050 [Sorghum bicolor]
          Length = 1090

 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 126/490 (25%), Positives = 236/490 (48%), Gaps = 6/490 (1%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C +S +G A  L  D+KSRG   N    T LI G+C+ GE+  A ++   M   G+ P+ 
Sbjct: 340 CKVSMLGPALDLMVDLKSRGITINKTMCTILIDGFCQVGEISKAKQILKSMLEDGIDPDV 399

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           +TYS L+ G+ R   +        ++  RM++   L  N+  +  L+   C+ GYV    
Sbjct: 400 VTYSALINGMCRMAKMHETK----EILSRMQKSGILP-NDVLYTTLICYYCKAGYVKVAL 454

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
           +   D+ +   V        ++ +  R G    A      M +  ++ + VS+N I+   
Sbjct: 455 KHFVDIYRRGLVANPVIHNALLRAFYREGMITEAEHFRQYMSRMNISFNSVSFNCIIDSY 514

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
           C  G  + A+ + ++ +++G+ P+  TY+ L+ GLC    L +A++ +  +L        
Sbjct: 515 CHRGKIVEAFSVYDDMVRYGHSPNVCTYQNLLRGLCQGGHLVQAKQFMFCLLDIPSAVDE 574

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
           +  N  L  +C      E L++   M++  C PD+ T   +++GFC+ G+I  AL V+  
Sbjct: 575 KTFNALLLGICKYGTLDEALDICEKMVKNNCLPDIHTYTILLSGFCRKGKILPAL-VMLQ 633

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
           M+  K   PD V +T ++ GL+N G+++ A  +  +++ + G     + YN+++ G  + 
Sbjct: 634 MMLEKGVVPDTVAYTCLLNGLINEGQVKAASYVFQEIICKEGLYADCIAYNSLMNGYLKG 693

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY 424
             V   K + + M    V  +S +Y I++ G  +  Q  ++   +  +V      DN  Y
Sbjct: 694 GNVNTIKRMMSDMYQNEVYPNSASYNILMHGYVKRGQFSKSLYLYKYMVRKGIRPDNVTY 753

Query: 425 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484
             +I GL   G I  AV FL ++V  G+ P+ + ++++I    + S    A ++   M+ 
Sbjct: 754 RLLILGLSECGLIDIAVKFLEKMVLEGIFPDKLVFDILITSFSEKSKMHNALRLFNCMKC 813

Query: 485 NGLNPDAVTW 494
             L+P + T+
Sbjct: 814 LHLSPSSKTF 823



 Score =  174 bits (442), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 125/500 (25%), Positives = 232/500 (46%), Gaps = 22/500 (4%)

Query: 6   GLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSL 65
           G  ++  A  +F  M  +  VP+V +YTT+I GYCR   +D A  V  EM   GV+P+ L
Sbjct: 271 GEGKINHARCVFNHMLRQTLVPSVATYTTMIDGYCRNRRIDKALSVLSEMEITGVMPSEL 330

Query: 66  TYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFR 125
           TYS L+ G  +   +  A  LM  L  R      +++N      L+D  C+ G +++  +
Sbjct: 331 TYSALLNGYCKVSMLGPALDLMVDLKSR-----GITINKTMCTILIDGFCQVGEISKAKQ 385

Query: 126 IAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLC 185
           I + M +     +      +I+ +CR  + H    ++  M+K G+ P+ V Y +++   C
Sbjct: 386 ILKSMLEDGIDPDVVTYSALINGMCRMAKMHETKEILSRMQKSGILPNDVLYTTLICYYC 445

Query: 186 KHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTR 245
           K G    A +   +  + G + +   +  L+     E  + +A    Q+M S+ ++    
Sbjct: 446 KAGYVKVALKHFVDIYRRGLVANPVIHNALLRAFYREGMITEAEHFRQYM-SRMNISFNS 504

Query: 246 IC-NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
           +  N  + + C      E  +V   M++    P+V T   ++ G C+ G + +A + +  
Sbjct: 505 VSFNCIIDSYCHRGKIVEAFSVYDDMVRYGHSPNVCTYQNLLRGLCQGGHLVQAKQFM-- 562

Query: 305 MVAGKFC------APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
                FC      A D  TF  ++ G+   G + EAL++  + M +    P I TY  +L
Sbjct: 563 -----FCLLDIPSAVDEKTFNALLLGICKYGTLDEALDIC-EKMVKNNCLPDIHTYTILL 616

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
            G  R  ++  A  +   ML  GVV D+  Y  +++GL    Q+  A   + +I+    +
Sbjct: 617 SGFCRKGKILPALVMLQMMLEKGVVPDTVAYTCLLNGLINEGQVKAASYVFQEIICKEGL 676

Query: 419 H-DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQ 477
           + D   Y +++ G  + G ++     + ++  + V PN   YN+++ G  K     ++  
Sbjct: 677 YADCIAYNSLMNGYLKGGNVNTIKRMMSDMYQNEVYPNSASYNILMHGYVKRGQFSKSLY 736

Query: 478 ILREMRKNGLNPDAVTWRIL 497
           + + M + G+ PD VT+R+L
Sbjct: 737 LYKYMVRKGIRPDNVTYRLL 756



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 126/497 (25%), Positives = 227/497 (45%), Gaps = 43/497 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC      +A  +   MKS   + N  +Y T++H Y + G    A  V ++M    +
Sbjct: 162 LNSLCTNGEFRKAEDMLQKMKS-CCLSNSATYNTILHWYVKKGRFKAALCVLEDMERDSI 220

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             +  TY++++  + R +   RA    F L +RM+++ DL+ +   +  L++    EG +
Sbjct: 221 QADIYTYNIMIDKLCRIKRSARA----FLLLKRMRKD-DLTPDECTYNTLINGFFGEGKI 275

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           N                             R   NH        M ++ L PS+ +Y ++
Sbjct: 276 NHA---------------------------RCVFNH--------MLRQTLVPSVATYTTM 300

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G C++    +A  +L E    G +PSE TY  L+ G C  S L  A  ++  + S+  
Sbjct: 301 IDGYCRNRRIDKALSVLSEMEITGVMPSELTYSALLNGYCKVSMLGPALDLMVDLKSRGI 360

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                +C I +   C +   ++   +L  ML+    PDV+T + +ING C+M ++ E  +
Sbjct: 361 TINKTMCTILIDGFCQVGEISKAKQILKSMLEDGIDPDVVTYSALINGMCRMAKMHETKE 420

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +L+ M       P+ V +TT+I      G ++ AL     +  +RG     V +NA+LR 
Sbjct: 421 ILSRMQKSGI-LPNDVLYTTLICYYCKAGYVKVALKHFVDIY-RRGLVANPVIHNALLRA 478

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
            +R   + EA+     M  + +  +S ++  +ID  C   ++ EA   +DD+V   +  +
Sbjct: 479 FYREGMITEAEHFRQYMSRMNISFNSVSFNCIIDSYCHRGKIVEAFSVYDDMVRYGHSPN 538

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              Y  +++GLC+ G + +A  F++ L+D     +   +N ++ G CK     EA  I  
Sbjct: 539 VCTYQNLLRGLCQGGHLVQAKQFMFCLLDIPSAVDEKTFNALLLGICKYGTLDEALDICE 598

Query: 481 EMRKNGLNPDAVTWRIL 497
           +M KN   PD  T+ IL
Sbjct: 599 KMVKNNCLPDIHTYTIL 615



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 133/574 (23%), Positives = 252/574 (43%), Gaps = 90/574 (15%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ +C ++++ E  ++   M+  G +PN V YTTLI  YC+ G + VA K F ++   G+
Sbjct: 406 INGMCRMAKMHETKEILSRMQKSGILPNDVLYTTLICYYCKAGYVKVALKHFVDIYRRGL 465

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           + N + ++ L+R   R   +  A     + + +     ++S N+ +F  ++DS C  G +
Sbjct: 466 VANPVIHNALLRAFYREGMITEA-----EHFRQYMSRMNISFNSVSFNCIIDSYCHRGKI 520

Query: 121 NEVFRIAEDMPQ-GKSVNEEFAC------------GHMIDS------------------- 148
            E F + +DM + G S N    C            GH++ +                   
Sbjct: 521 VEAFSVYDDMVRYGHSPN---VCTYQNLLRGLCQGGHLVQAKQFMFCLLDIPSAVDEKTF 577

Query: 149 ------LCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQ 202
                 +C+ G    A  +   M K    P + +Y  ++ G C+ G  + A  +L+  ++
Sbjct: 578 NALLLGICKYGTLDEALDICEKMVKNNCLPDIHTYTILLSGFCRKGKILPALVMLQMMLE 637

Query: 203 FGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD-----VDRTRICNIYLRALCLI 257
            G +P    Y  L+ GL  E  ++ A  V Q ++ K+      +    + N YL+     
Sbjct: 638 KGVVPDTVAYTCLLNGLINEGQVKAASYVFQEIICKEGLYADCIAYNSLMNGYLKG---- 693

Query: 258 KNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVT 317
            N   +  ++  M Q +  P+  + N +++G+ K G+  ++L +   MV  K   PD VT
Sbjct: 694 GNVNTIKRMMSDMYQNEVYPNSASYNILMHGYVKRGQFSKSLYLYKYMVR-KGIRPDNVT 752

Query: 318 FTTIIFGLLNVGRIQEALNLLYQ-----VMPQR--------------------------- 345
           +  +I GL   G I  A+  L +     + P +                           
Sbjct: 753 YRLLILGLSECGLIDIAVKFLEKMVLEGIFPDKLVFDILITSFSEKSKMHNALRLFNCMK 812

Query: 346 --GYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLD 403
               SP   T++A++ GL R   ++++ EV + ML +G+  + T Y  +++  C   ++D
Sbjct: 813 CLHLSPSSKTFSAMINGLIRKNYLDQSHEVLHEMLQVGLQPNHTHYIALVNAKCRVGEID 872

Query: 404 EAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463
            A R  +++     +      +++I+GLCR GK+ EAV     ++ SG+ P +  +  ++
Sbjct: 873 RAFRLKEEMKAIGIVPAEVAESSIIRGLCRCGKLEEAVIVFSNMMRSGMVPTVATFTTLM 932

Query: 464 DGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
              CK S   +A  + R M    L  D V++ +L
Sbjct: 933 HSLCKESKIADALHLKRLMELCRLKVDVVSYNVL 966



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 117/527 (22%), Positives = 227/527 (43%), Gaps = 47/527 (8%)

Query: 1    MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYC-------------------- 40
            +D  C   ++ EA  ++ DM   GH PNV +Y  L+ G C                    
Sbjct: 511  IDSYCHRGKIVEAFSVYDDMVRYGHSPNVCTYQNLLRGLCQGGHLVQAKQFMFCLLDIPS 570

Query: 41   ---------------RTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANV 85
                           + G +D A  + ++M     LP+  TY++L+ G  R   +  A V
Sbjct: 571  AVDEKTFNALLLGICKYGTLDEALDICEKMVKNNCLPDIHTYTILLSGFCRKGKILPALV 630

Query: 86   LMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE-FACGH 144
            ++     +M  E+ +  +  A+  L++ L  EG V     + +++   + +  +  A   
Sbjct: 631  ML-----QMMLEKGVVPDTVAYTCLLNGLINEGQVKAASYVFQEIICKEGLYADCIAYNS 685

Query: 145  MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
            +++   + G  +   R++  M +  + P+  SYN ++HG  K G   ++  L +  ++ G
Sbjct: 686  LMNGYLKGGNVNTIKRMMSDMYQNEVYPNSASYNILMHGYVKRGQFSKSLYLYKYMVRKG 745

Query: 205  YLPSEHTYKVLVEGL--CGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTE 262
              P   TY++L+ GL  CG  D+  A K L+ M+ +       + +I + +         
Sbjct: 746  IRPDNVTYRLLILGLSECGLIDI--AVKFLEKMVLEGIFPDKLVFDILITSFSEKSKMHN 803

Query: 263  LLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTII 322
             L +   M      P   T + +ING  +   ++++ +VL++M+      P+   +  ++
Sbjct: 804  ALRLFNCMKCLHLSPSSKTFSAMINGLIRKNYLDQSHEVLHEMLQVGL-QPNHTHYIALV 862

Query: 323  FGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGV 382
                 VG I  A  L  + M   G  P  V  ++++RGL R  ++EEA  VF+ M+  G+
Sbjct: 863  NAKCRVGEIDRAFRL-KEEMKAIGIVPAEVAESSIIRGLCRCGKLEEAVIVFSNMMRSGM 921

Query: 383  VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVH 442
            V    T+  ++  LC+ +++ +A      +       D   Y  +I GLC+   I +A+ 
Sbjct: 922  VPTVATFTTLMHSLCKESKIADALHLKRLMELCRLKVDVVSYNVLITGLCKDKHISDALD 981

Query: 443  FLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNP 489
               E+   G+ PN+  Y  +          +   ++L ++ + GL P
Sbjct: 982  LYGEMKSKGLWPNVTTYITLTGAMYSTGRMQNGEELLEDIEERGLIP 1028



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 121/516 (23%), Positives = 216/516 (41%), Gaps = 88/516 (17%)

Query: 22  SRGHVPNVVSYTTLIHGYCRTGE-MDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDV 80
           SR    N V +  LI  Y +  + +D A  VF  M  CG   + +  + +++ ++   + 
Sbjct: 78  SRFDSTNHVVFELLIKAYVKERKVLDAAVAVF-FMDDCGFKASPVACNSILKALVE--EG 134

Query: 81  ERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKS---VN 137
           E   V +F L E +  +  L V       L++SLC  G     FR AEDM Q      ++
Sbjct: 135 ESKYVWLF-LRESLARKFPLDVTTCNI--LLNSLCTNGE----FRKAEDMLQKMKSCCLS 187

Query: 138 EEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLL 197
                  ++    + GR   A  V+  M +  +   + +YN ++  LC+     RA+ LL
Sbjct: 188 NSATYNTILHWYVKKGRFKAALCVLEDMERDSIQADIYTYNIMIDKLCRIKRSARAFLLL 247

Query: 198 EEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLI 257
           +   +    P E TY  L+ G  GE  +  AR V   ML +  V                
Sbjct: 248 KRMRKDDLTPDECTYNTLINGFFGEGKINHARCVFNHMLRQTLV---------------- 291

Query: 258 KNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM-VAGKFCAPDAV 316
                              P V T  T+I+G+C+  RI++AL VL++M + G    P  +
Sbjct: 292 -------------------PSVATYTTMIDGYCRNRRIDKALSVLSEMEITG--VMPSEL 330

Query: 317 TFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNC 376
           T++ ++ G   V  +  AL+L+   +  RG +        ++ G  ++  + +AK++   
Sbjct: 331 TYSALLNGYCKVSMLGPALDLMVD-LKSRGITINKTMCTILIDGFCQVGEISKAKQILKS 389

Query: 377 MLGIGVVADSTTYAIVIDGLCESNQLDEAKRFW----------DDIVWPSNI-------- 418
           ML  G+  D  TY+ +I+G+C   ++ E K             +D+++ + I        
Sbjct: 390 MLEDGIDPDVVTYSALINGMCRMAKMHETKEILSRMQKSGILPNDVLYTTLICYYCKAGY 449

Query: 419 -----------------HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNV 461
                             +  ++ A+++   R G I EA HF   +    ++ N V +N 
Sbjct: 450 VKVALKHFVDIYRRGLVANPVIHNALLRAFYREGMITEAEHFRQYMSRMNISFNSVSFNC 509

Query: 462 VIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           +ID  C      EA+ +  +M + G +P+  T++ L
Sbjct: 510 IIDSYCHRGKIVEAFSVYDDMVRYGHSPNVCTYQNL 545



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 96/197 (48%), Gaps = 5/197 (2%)

Query: 12   EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
            ++H++  +M   G  PN   Y  L++  CR GE+D A+++ +EM+  G++P  +  S ++
Sbjct: 838  QSHEVLHEMLQVGLQPNHTHYIALVNAKCRVGEIDRAFRLKEEMKAIGIVPAEVAESSII 897

Query: 72   RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP 131
            RG+ R   +E A V++F    R      +    A F  L+ SLC+E  + +   +   M 
Sbjct: 898  RGLCRCGKLEEA-VIVFSNMMR----SGMVPTVATFTTLMHSLCKESKIADALHLKRLME 952

Query: 132  QGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCM 191
              +   +  +   +I  LC+      A  +   M+ +GL P++ +Y ++   +   G   
Sbjct: 953  LCRLKVDVVSYNVLITGLCKDKHISDALDLYGEMKSKGLWPNVTTYITLTGAMYSTGRMQ 1012

Query: 192  RAYQLLEEGIQFGYLPS 208
               +LLE+  + G +P+
Sbjct: 1013 NGEELLEDIEERGLIPA 1029



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 60/285 (21%), Positives = 123/285 (43%), Gaps = 30/285 (10%)

Query: 218 GLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQP 277
           G  G+SD + A K+L  ++ +  +D  RI  IY  A+            ++   Q   Q 
Sbjct: 6   GSLGKSDGKLALKILNSIVERSGLD--RITYIYCMAV-----------RILIQAQMHSQA 52

Query: 278 DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNL 337
             +  +  + GF         L++++     +F + + V F  +I   +   ++ +A   
Sbjct: 53  MSVLKHLAVTGFSCTAIFTSLLRIIS-----RFDSTNHVVFELLIKAYVKERKVLDAAVA 107

Query: 338 LYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCM-----LGIGVVADSTTYAIV 392
           ++  M   G+    V  N++L+ L     VEE +  +  +     L      D TT  I+
Sbjct: 108 VF-FMDDCGFKASPVACNSILKAL-----VEEGESKYVWLFLRESLARKFPLDVTTCNIL 161

Query: 393 IDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGV 452
           ++ LC + +  +A+     +     + ++  Y  ++    + G+   A+  L ++    +
Sbjct: 162 LNSLCTNGEFRKAEDMLQKM-KSCCLSNSATYNTILHWYVKKGRFKAALCVLEDMERDSI 220

Query: 453 TPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
             +I  YN++ID  C++     A+ +L+ MRK+ L PD  T+  L
Sbjct: 221 QADIYTYNIMIDKLCRIKRSARAFLLLKRMRKDDLTPDECTYNTL 265



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 82/170 (48%), Gaps = 5/170 (2%)

Query: 5    CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
            C +  +  A +L  +MK+ G VP  V+ +++I G CR G+++ A  VF  M   G++P  
Sbjct: 866  CRVGEIDRAFRLKEEMKAIGIVPAEVAESSIIRGLCRCGKLEEAVIVFSNMMRSGMVPTV 925

Query: 65   LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
             T++ L+  + +   +  A+ L  K   R+ E   L V+  ++  L+  LC++ ++++  
Sbjct: 926  ATFTTLMHSLCKESKI--ADALHLK---RLMELCRLKVDVVSYNVLITGLCKDKHISDAL 980

Query: 125  RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSL 174
             +  +M              +  ++  +GR      ++  + +RGL P+ 
Sbjct: 981  DLYGEMKSKGLWPNVTTYITLTGAMYSTGRMQNGEELLEDIEERGLIPAF 1030


>gi|356510925|ref|XP_003524184.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 594

 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 142/497 (28%), Positives = 242/497 (48%), Gaps = 18/497 (3%)

Query: 7   LSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEM-RHCGVLPNSL 65
           L  + EA  LF  M     +P+V  +T L+    R      A  +   M    G+  +++
Sbjct: 54  LKNIDEALDLFQGMARMKPLPSVKDFTLLLGAIVRLKHYTTAISLVKHMFSSLGIEADTI 113

Query: 66  TYSVLVRGVLRTRDVERA-NVL--MFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           T ++++  + R + V    +VL  MFKL         L         L++ LC +G V +
Sbjct: 114 TLNIVINCLCRLKLVAFGFSVLGTMFKL--------GLEPTVMTLTTLINGLCVQGNVAQ 165

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
              +A+ M +     + +  G +I+ LC++G    A   +  M +R   P++V Y++I+ 
Sbjct: 166 AVGLADHMEKMWYPLDVYTYGVLINGLCKTGDTLAAVGWLRKMEERNWKPNVVVYSTIMD 225

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           GLCK G    A  L  E    G  P+  TY  L++GLC     ++A  +L  M+      
Sbjct: 226 GLCKDGLVSEALNLCSEMNGKGVRPNLVTYACLIQGLCNFGRWKEAGSLLDEMMKMGMRP 285

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
             ++ NI + A C      +  +V+ FM+ T   PDV T N++I+ +C   ++ EA++V 
Sbjct: 286 DLQMLNILVDAFCKEGKVMQAKSVIGFMILTGEGPDVFTYNSLIHIYCLQNKMNEAMRVF 345

Query: 303 NDMVA-GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
           + MV+ G+   PD V FT++I G      I +A++LL + M + G+ P + T+  ++ G 
Sbjct: 346 HLMVSRGRL--PDIVVFTSLIHGWCKDKNINKAMHLLEE-MSKMGFVPDVATWTTLIGGF 402

Query: 362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
            +  R   AKE+F  M   G V +  T A+++DGLC+ N L EA       +  SN+  N
Sbjct: 403 CQAGRPLAAKELFLNMHKYGQVPNLQTCAVILDGLCKENLLSEAVSL-AKAMEKSNLDLN 461

Query: 422 YV-YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
            V Y+ ++ G+C +GK++ A      L   G+  N+  Y ++I G CK     +A  +L 
Sbjct: 462 IVIYSILLDGMCSAGKLNAAWELFSSLPGKGLQINVYIYTIMIKGLCKQGSLDKAEDLLI 521

Query: 481 EMRKNGLNPDAVTWRIL 497
            M +NG  P+  T+ + 
Sbjct: 522 NMEENGCLPNNCTYNVF 538



 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 135/504 (26%), Positives = 219/504 (43%), Gaps = 43/504 (8%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC L  V     +   M   G  P V++ TTLI+G C  G +  A  + D M       +
Sbjct: 122 LCRLKLVAFGFSVLGTMFKLGLEPTVMTLTTLINGLCVQGNVAQAVGLADHMEKMWYPLD 181

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             TY VL+ G+ +T D   A       W R  EE +   N   ++ ++D LC++G V+E 
Sbjct: 182 VYTYGVLINGLCKTGDTLAAVG-----WLRKMEERNWKPNVVVYSTIMDGLCKDGLVSEA 236

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             +  +                                   M  +G+ P+LV+Y  ++ G
Sbjct: 237 LNLCSE-----------------------------------MNGKGVRPNLVTYACLIQG 261

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LC  G    A  LL+E ++ G  P      +LV+  C E  + +A+ V+ FM+   +   
Sbjct: 262 LCNFGRWKEAGSLLDEMMKMGMRPDLQMLNILVDAFCKEGKVMQAKSVIGFMILTGEGPD 321

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               N  +   CL     E + V   M+     PD++   ++I+G+CK   I +A+ +L 
Sbjct: 322 VFTYNSLIHIYCLQNKMNEAMRVFHLMVSRGRLPDIVVFTSLIHGWCKDKNINKAMHLLE 381

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           +M    F  PD  T+TT+I G    GR   A  L    M + G  P + T   +L GL +
Sbjct: 382 EMSKMGF-VPDVATWTTLIGGFCQAGRPLAAKELFLN-MHKYGQVPNLQTCAVILDGLCK 439

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
              + EA  +   M    +  +   Y+I++DG+C + +L+ A   +  +       + Y+
Sbjct: 440 ENLLSEAVSLAKAMEKSNLDLNIVIYSILLDGMCSAGKLNAAWELFSSLPGKGLQINVYI 499

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y  MIKGLC+ G + +A   L  + ++G  PN   YNV + G         + + L  MR
Sbjct: 500 YTIMIKGLCKQGSLDKAEDLLINMEENGCLPNNCTYNVFVQGLLTKKEIARSIKYLTIMR 559

Query: 484 KNGLNPDAVTWR-ILDKLHGNRGN 506
             G + DA T   I++ L  N G+
Sbjct: 560 DKGFSVDAATTEFIINYLSTNEGD 583



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 102/407 (25%), Positives = 173/407 (42%), Gaps = 43/407 (10%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           MD LC    V EA  L  +M  +G  PN+V+Y  LI G C  G    A  + DEM   G+
Sbjct: 224 MDGLCKDGLVSEALNLCSEMNGKGVRPNLVTYACLIQGLCNFGRWKEAGSLLDEMMKMGM 283

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P                D++  N+                        LVD+ C+EG V
Sbjct: 284 RP----------------DLQMLNI------------------------LVDAFCKEGKV 303

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +   +   M       + F    +I   C   + + A RV ++M  RG  P +V + S+
Sbjct: 304 MQAKSVIGFMILTGEGPDVFTYNSLIHIYCLQNKMNEAMRVFHLMVSRGRLPDIVVFTSL 363

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +HG CK     +A  LLEE  + G++P   T+  L+ G C       A+++   M     
Sbjct: 364 IHGWCKDKNINKAMHLLEEMSKMGFVPDVATWTTLIGGFCQAGRPLAAKELFLNMHKYGQ 423

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           V   + C + L  LC     +E +++   M ++    +++  + +++G C  G++  A +
Sbjct: 424 VPNLQTCAVILDGLCKENLLSEAVSLAKAMEKSNLDLNIVIYSILLDGMCSAGKLNAAWE 483

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           + + +  GK    +   +T +I GL   G + +A +LL   M + G  P   TYN  ++G
Sbjct: 484 LFSSL-PGKGLQINVYIYTIMIKGLCKQGSLDKAEDLLIN-MEENGCLPNNCTYNVFVQG 541

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKR 407
           L   + +  + +    M   G   D+ T   +I+ L  +N+ D   R
Sbjct: 542 LLTKKEIARSIKYLTIMRDKGFSVDAATTEFIINYL-STNEGDTKIR 587



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 109/236 (46%), Gaps = 10/236 (4%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C    + +A  L  +M   G VP+V ++TTLI G+C+ G    A ++F  M   G +PN 
Sbjct: 368 CKDKNINKAMHLLEEMSKMGFVPDVATWTTLIGGFCQAGRPLAAKELFLNMHKYGQVPNL 427

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
            T +V++ G+ +   +  A  L      +  E+ +L +N   ++ L+D +C  G +N  +
Sbjct: 428 QTCAVILDGLCKENLLSEAVSL-----AKAMEKSNLDLNIVIYSILLDGMCSAGKLNAAW 482

Query: 125 RIAEDMP-QGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            +   +P +G  +N  +    MI  LC+ G    A  ++  M + G  P+  +YN  V G
Sbjct: 483 ELFSSLPGKGLQINV-YIYTIMIKGLCKQGSLDKAEDLLINMEENGCLPNNCTYNVFVQG 541

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           L       R+ + L      G+     T + ++  L   S  E   K+ +F+  K+
Sbjct: 542 LLTKKEIARSIKYLTIMRDKGFSVDAATTEFIINYL---STNEGDTKIREFLFRKR 594


>gi|242052075|ref|XP_002455183.1| hypothetical protein SORBIDRAFT_03g005716 [Sorghum bicolor]
 gi|241927158|gb|EES00303.1| hypothetical protein SORBIDRAFT_03g005716 [Sorghum bicolor]
          Length = 892

 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 134/547 (24%), Positives = 249/547 (45%), Gaps = 79/547 (14%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D+LC   R  EA +LF  M +RG  PN V+Y  LIH  C+ G MD A  +FD MR  G+
Sbjct: 342 IDKLCKDRRFREAERLFRGMANRGLEPNEVTYAILIHSLCKRGMMDDALCMFDRMREKGI 401

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
                 Y+ L+ G  +  +  +A  L+ ++ E+      L+ + A+++ L+  LCR+G +
Sbjct: 402 RVTVYPYNSLINGYCQHDNFHQARGLLNEMVEK-----GLAPSAASYSPLIAGLCRKGDL 456

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                +  +M +       +    +I   C+ G    A+R+   M    + P+ V++N +
Sbjct: 457 ASAMELHREMARNGVSGNVYTFTTLISGFCKDGNMDEAARLFDKMIDSSVVPNEVTFNVM 516

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G C+ G   +A+QL ++ +  G  P  +TY+ L+  LC           L  M +K+ 
Sbjct: 517 IEGYCRVGNVRKAFQLYDQMVDRGLTPDNYTYRSLISVLC---------LTLGAMKAKEF 567

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           VD        L   C++ N                     +L T++ GFCK GR+ E   
Sbjct: 568 VDD-------LENNCVVLNS-------------------FSLTTLMYGFCKEGRLTETYH 601

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           + ++M A +    D ++FT I++  L +    E +++L++ M ++G  P  V +  ++  
Sbjct: 602 IWDEMRA-RGVKLDLISFTVIVYAALKL-HDGEKISVLFREMKEKGVKPDNVFHTCMIDV 659

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
             +   + +A   ++ M+  G   +  TY ++I+ LC+S  L  A+   ++++    + +
Sbjct: 660 HSKEENIVQALNCWDKMIADGCSPNVVTYTVLINHLCKSGYLSSAQILCEEMLVGRFLPN 719

Query: 421 NYVY----------------------------------AAMIKGLCRSGKIHEAVHFLYE 446
           ++ Y                                    +IKG C++G+I  A+  +  
Sbjct: 720 SFTYNCFLDFLANEGELEKAKVLHATILEGCLANTVTFNTLIKGFCKAGQIQGAIDLMQN 779

Query: 447 LVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK---LHGN 503
             +SG  P+ + Y+ +I+  CK+    +A+Q+  EM   GL PD V + IL +   +HG 
Sbjct: 780 NTESGFFPDCISYSTIINELCKVGDINKAFQLWNEMLYKGLKPDIVAYNILIRWCNIHGE 839

Query: 504 RGNDFGL 510
                G+
Sbjct: 840 FDKGLGI 846



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 131/503 (26%), Positives = 232/503 (46%), Gaps = 44/503 (8%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C +  +  A  L   M+S+G   + V Y  L++G CR   +  A +V + M   G++ + 
Sbjct: 206 CEIRNLDGARGLLTRMESKGVKGSAVPYNVLMYGLCRNNRVLEAVEVKNSMVERGIVADE 265

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDL-SVNNAAFANLVDSLCREGYVNEV 123
           +TY  LV G  RT ++E A     ++ + M     + SV + +F  +VD L + G++++ 
Sbjct: 266 VTYRTLVYGFCRTEELEMA----LEMTDDMLSLHFVPSVASCSF--MVDGLRKRGHIDKA 319

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           FR+A  + +   V   FAC  +ID LC+  R   A R+   M  RGL P+ V+Y  ++H 
Sbjct: 320 FRLACHLGELGMVPNLFACNALIDKLCKDRRFREAERLFRGMANRGLEPNEVTYAILIHS 379

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LCK G    A  + +   + G   + + Y  L+ G C   +  +AR +L  M+ K     
Sbjct: 380 LCKRGMMDDALCMFDRMREKGIRVTVYPYNSLINGYCQHDNFHQARGLLNEMVEKG---- 435

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                                            P   + + +I G C+ G +  A+++  
Sbjct: 436 -------------------------------LAPSAASYSPLIAGLCRKGDLASAMELHR 464

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           +M A    + +  TFTT+I G    G + EA  L +  M      P  VT+N ++ G  R
Sbjct: 465 EM-ARNGVSGNVYTFTTLISGFCKDGNMDEAARL-FDKMIDSSVVPNEVTFNVMIEGYCR 522

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
           +  V +A ++++ M+  G+  D+ TY  +I  LC +    +AK F DD+     + +++ 
Sbjct: 523 VGNVRKAFQLYDQMVDRGLTPDNYTYRSLISVLCLTLGAMKAKEFVDDLENNCVVLNSFS 582

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
              ++ G C+ G++ E  H   E+   GV  +++ + V++  A KL    +   + REM+
Sbjct: 583 LTTLMYGFCKEGRLTETYHIWDEMRARGVKLDLISFTVIVYAALKLHDGEKISVLFREMK 642

Query: 484 KNGLNPDAVTWRILDKLHGNRGN 506
           + G+ PD V    +  +H    N
Sbjct: 643 EKGVKPDNVFHTCMIDVHSKEEN 665



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 136/540 (25%), Positives = 232/540 (42%), Gaps = 77/540 (14%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M  LC  +RV EA ++   M  RG V + V+Y TL++G+CRT E+++A ++ D+M     
Sbjct: 237 MYGLCRNNRVLEAVEVKNSMVERGIVADEVTYRTLVYGFCRTEELEMALEMTDDMLSLHF 296

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P+  + S +V                                        D L + G++
Sbjct: 297 VPSVASCSFMV----------------------------------------DGLRKRGHI 316

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           ++ FR+A  + +   V   FAC  +ID LC+  R   A R+   M  RGL P+ V+Y  +
Sbjct: 317 DKAFRLACHLGELGMVPNLFACNALIDKLCKDRRFREAERLFRGMANRGLEPNEVTYAIL 376

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +H LCK G    A  + +   + G   + + Y  L+ G C   +  +AR +L  M+ K  
Sbjct: 377 IHSLCKRGMMDDALCMFDRMREKGIRVTVYPYNSLINGYCQHDNFHQARGLLNEMVEKGL 436

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                  +  +  LC   +    + +   M +     +V T  T+I+GFCK G ++EA +
Sbjct: 437 APSAASYSPLIAGLCRKGDLASAMELHREMARNGVSGNVYTFTTLISGFCKDGNMDEAAR 496

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           + + M+      P+ VTF  +I G   VG +++A   LY  M  RG +P   TY +++  
Sbjct: 497 LFDKMIDSSV-VPNEVTFNVMIEGYCRVGNVRKAFQ-LYDQMVDRGLTPDNYTYRSLISV 554

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDD--------- 411
           L       +AKE  + +    VV +S +   ++ G C+  +L E    WD+         
Sbjct: 555 LCLTLGAMKAKEFVDDLENNCVVLNSFSLTTLMYGFCKEGRLTETYHIWDEMRARGVKLD 614

Query: 412 ------IVWPS-NIH-------------------DNYVYAAMIKGLCRSGKIHEAVHFLY 445
                 IV+ +  +H                   DN  +  MI    +   I +A++   
Sbjct: 615 LISFTVIVYAALKLHDGEKISVLFREMKEKGVKPDNVFHTCMIDVHSKEENIVQALNCWD 674

Query: 446 ELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
           +++  G +PN+V Y V+I+  CK      A  +  EM      P++ T+        N G
Sbjct: 675 KMIADGCSPNVVTYTVLINHLCKSGYLSSAQILCEEMLVGRFLPNSFTYNCFLDFLANEG 734



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 98/370 (26%), Positives = 179/370 (48%), Gaps = 2/370 (0%)

Query: 128 EDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKH 187
           ++M Q K   +E+     I + C      GA  ++  M  +G+  S V YN +++GLC++
Sbjct: 184 DEMVQCKFPLDEYVYTAGIRAYCEIRNLDGARGLLTRMESKGVKGSAVPYNVLMYGLCRN 243

Query: 188 GGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC 247
              + A ++    ++ G +  E TY+ LV G C   +LE A ++   MLS   V     C
Sbjct: 244 NRVLEAVEVKNSMVERGIVADEVTYRTLVYGFCRTEELEMALEMTDDMLSLHFVPSVASC 303

Query: 248 NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA 307
           +  +  L    +  +   +   + +    P++   N +I+  CK  R  EA ++   M A
Sbjct: 304 SFMVDGLRKRGHIDKAFRLACHLGELGMVPNLFACNALIDKLCKDRRFREAERLFRGM-A 362

Query: 308 GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRV 367
            +   P+ VT+  +I  L   G + +AL  ++  M ++G    +  YN+++ G  +    
Sbjct: 363 NRGLEPNEVTYAILIHSLCKRGMMDDAL-CMFDRMREKGIRVTVYPYNSLINGYCQHDNF 421

Query: 368 EEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAM 427
            +A+ + N M+  G+   + +Y+ +I GLC    L  A     ++       + Y +  +
Sbjct: 422 HQARGLLNEMVEKGLAPSAASYSPLIAGLCRKGDLASAMELHREMARNGVSGNVYTFTTL 481

Query: 428 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
           I G C+ G + EA     +++DS V PN V +NV+I+G C++   R+A+Q+  +M   GL
Sbjct: 482 ISGFCKDGNMDEAARLFDKMIDSSVVPNEVTFNVMIEGYCRVGNVRKAFQLYDQMVDRGL 541

Query: 488 NPDAVTWRIL 497
            PD  T+R L
Sbjct: 542 TPDNYTYRSL 551



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/329 (22%), Positives = 140/329 (42%), Gaps = 66/329 (20%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           +A +   D+++   V N  S TTL++G+C+ G +   Y ++DEMR  GV  + ++++V+V
Sbjct: 563 KAKEFVDDLENNCVVLNSFSLTTLMYGFCKEGRLTETYHIWDEMRARGVKLDLISFTVIV 622

Query: 72  RGVLRTRDVERANVLMFKLWER---------------MKEEEDL---------------S 101
              L+  D E+ +VL  ++ E+                 +EE++               S
Sbjct: 623 YAALKLHDGEKISVLFREMKEKGVKPDNVFHTCMIDVHSKEENIVQALNCWDKMIADGCS 682

Query: 102 VNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRV 161
            N   +  L++ LC+ GY++    + E+M  G+ +   F     +D L   G    A +V
Sbjct: 683 PNVVTYTVLINHLCKSGYLSSAQILCEEMLVGRFLPNSFTYNCFLDFLANEGELEKA-KV 741

Query: 162 VYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCG 221
           ++     G   + V++N+++ G CK G    A  L++   + G+ P   +Y  ++  LC 
Sbjct: 742 LHATILEGCLANTVTFNTLIKGFCKAGQIQGAIDLMQNNTESGFFPDCISYSTIINELCK 801

Query: 222 ESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVIT 281
             D+ KA ++   ML K                                     +PD++ 
Sbjct: 802 VGDINKAFQLWNEMLYKG-----------------------------------LKPDIVA 826

Query: 282 LNTVINGFCKMGRIEEALKVLNDMVAGKF 310
            N +I      G  ++ L + +DMV  K+
Sbjct: 827 YNILIRWCNIHGEFDKGLGIYSDMVNLKY 855



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 58/246 (23%), Positives = 101/246 (41%), Gaps = 37/246 (15%)

Query: 287 NGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
           + + ++ R  +A  VL   ++    A    T + I+F L+ + +   A +L +  M Q  
Sbjct: 133 SSYLRLRRARDAADVLRLSLSSGI-AMKQYTASQILFALIKIRQFALARDL-FDEMVQCK 190

Query: 347 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
           +      Y A +R    +R ++ A+ +   M   GV   +  Y +++ GLC +N++ EA 
Sbjct: 191 FPLDEYVYTAGIRAYCEIRNLDGARGLLTRMESKGVKGSAVPYNVLMYGLCRNNRVLEAV 250

Query: 407 RFWDDIVWPSNIHDNYVYAAMIKGLCRS-------------------------------- 434
              + +V    + D   Y  ++ G CR+                                
Sbjct: 251 EVKNSMVERGIVADEVTYRTLVYGFCRTEELEMALEMTDDMLSLHFVPSVASCSFMVDGL 310

Query: 435 ---GKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 491
              G I +A      L + G+ PN+   N +ID  CK    REA ++ R M   GL P+ 
Sbjct: 311 RKRGHIDKAFRLACHLGELGMVPNLFACNALIDKLCKDRRFREAERLFRGMANRGLEPNE 370

Query: 492 VTWRIL 497
           VT+ IL
Sbjct: 371 VTYAIL 376


>gi|145326646|ref|NP_001077770.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332196072|gb|AEE34193.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 806

 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 137/508 (26%), Positives = 231/508 (45%), Gaps = 69/508 (13%)

Query: 12  EAHKLFFDMKSRGHV------PNVVSYTTLIHGYC----------------RTGEMDVAY 49
           + HKL F + + G +      P+VV++ TL+HG C                 TG ++ A 
Sbjct: 153 DCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGFLE-AV 211

Query: 50  KVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFAN 109
            +FD+M   G+ P  +T++ L+ G+     V  A  L+ K+  +      L ++   +  
Sbjct: 212 ALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGK-----GLHIDVVTYGT 266

Query: 110 LVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRG 169
           +V+ +C+ G       +   M +     +      +ID LC+ G +  A  +   M ++G
Sbjct: 267 IVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKG 326

Query: 170 LTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKAR 229
           + P++ +YN ++ G C  G    A +LL + I+    P   T+  L+     E  L +A 
Sbjct: 327 IAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAE 386

Query: 230 KVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGF 289
           K                       LC      E+L+  +F       PD +T N++I GF
Sbjct: 387 K-----------------------LC-----DEMLHRCIF-------PDTVTYNSMIYGF 411

Query: 290 CKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSP 349
           CK  R ++A K + D++A    +PD VTF TII       R+ E + LL ++  +RG   
Sbjct: 412 CKHNRFDDA-KHMFDLMA----SPDVVTFNTIIDVYCRAKRVDEGMQLLREI-SRRGLVA 465

Query: 350 GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFW 409
              TYN ++ G   +  +  A+++F  M+  GV  D+ T  I++ G CE+ +L+EA   +
Sbjct: 466 NTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELF 525

Query: 410 DDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKL 469
           + I       D   Y  +I G+C+  K+ EA      L   GV P++  YNV+I G C  
Sbjct: 526 EVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGK 585

Query: 470 SMKREAYQILREMRKNGLNPDAVTWRIL 497
           S   +A  +  +M+ NG  PD  T+  L
Sbjct: 586 SAISDANVLFHKMKDNGHEPDNSTYNTL 613



 Score =  175 bits (443), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 116/460 (25%), Positives = 226/460 (49%), Gaps = 13/460 (2%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           EA  LF  M   G  P V+++ TLI+G C  G +  A  + ++M   G+  + +TY  +V
Sbjct: 209 EAVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIV 268

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP 131
            G+ +  D + A  L+ K+     EE  +  +   ++ ++D LC++G+ ++   +  +M 
Sbjct: 269 NGMCKMGDTKSALNLLSKM-----EETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEML 323

Query: 132 QGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCM 191
           +       F    MID  C  GR   A R++  M +R + P ++++N+++    K G   
Sbjct: 324 EKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLF 383

Query: 192 RAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYL 251
            A +L +E +     P   TY  ++ G C  +  + A+ +   M S   V    I ++Y 
Sbjct: 384 EAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMASPDVVTFNTIIDVYC 443

Query: 252 RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC 311
           RA    K   E + +L  + +     +  T NT+I+GFC++  +  A  +  +M++   C
Sbjct: 444 RA----KRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVC 499

Query: 312 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK 371
            PD +T   +++G     +++EAL L ++V+         V YN ++ G+ +  +V+EA 
Sbjct: 500 -PDTITCNILLYGFCENEKLEEALEL-FEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAW 557

Query: 372 EVFNCMLGI-GVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKG 430
           ++F C L I GV  D  TY ++I G C  + + +A   +  +    +  DN  Y  +I+G
Sbjct: 558 DLF-CSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRG 616

Query: 431 LCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLS 470
             ++G+I +++  + E+  +G + +     +  +  C++S
Sbjct: 617 CLKAGEIDKSIELISEMRSNGFSGDAFTIKMAEEIICRVS 656



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 97/395 (24%), Positives = 175/395 (44%), Gaps = 13/395 (3%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           +C +     A  L   M+     P+VV Y+ +I   C+ G    A  +F EM   G+ PN
Sbjct: 271 MCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPN 330

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             TY+ ++ G         A  L+  + ER     +++ +   F  L+ +  +EG + E 
Sbjct: 331 VFTYNCMIDGFCSFGRWSDAQRLLRDMIER-----EINPDVLTFNALISASVKEGKLFEA 385

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            ++ ++M       +      MI   C+  R   A  +  +M     +P +V++N+I+  
Sbjct: 386 EKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLM----ASPDVVTFNTIIDV 441

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            C+        QLL E  + G + +  TY  L+ G C   +L  A+ + Q M+S      
Sbjct: 442 YCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPD 501

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
           T  CNI L   C  +   E L +   +  ++   D +  N +I+G CK  +++EA  +  
Sbjct: 502 TITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFC 561

Query: 304 DM-VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
            + + G    PD  T+  +I G      I +A N+L+  M   G+ P   TYN ++RG  
Sbjct: 562 SLPIHG--VEPDVQTYNVMISGFCGKSAISDA-NVLFHKMKDNGHEPDNSTYNTLIRGCL 618

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLC 397
           +   ++++ E+ + M   G   D+ T  +  + +C
Sbjct: 619 KAGEIDKSIELISEMRSNGFSGDAFTIKMAEEIIC 653



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 90/354 (25%), Positives = 163/354 (46%), Gaps = 13/354 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D+LC      +A  LF +M  +G  PNV +Y  +I G+C  G    A ++  +M    +
Sbjct: 303 IDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREI 362

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ LT++ L+   ++   +  A  L  ++  R      +  +   + +++   C+    
Sbjct: 363 NPDVLTFNALISASVKEGKLFEAEKLCDEMLHRC-----IFPDTVTYNSMIYGFCKHNRF 417

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           ++   + + M     V        +ID  CR+ R     +++  + +RGL  +  +YN++
Sbjct: 418 DDAKHMFDLMASPDVV----TFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTL 473

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM-LSKK 239
           +HG C+      A  L +E I  G  P   T  +L+ G C    LE+A ++ + + +SK 
Sbjct: 474 IHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKI 533

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
           D+D T   NI +  +C      E  ++   +     +PDV T N +I+GFC    I +A 
Sbjct: 534 DLD-TVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDA- 591

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVT 353
            VL   +      PD  T+ T+I G L  G I +++ L+ + M   G+S    T
Sbjct: 592 NVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISE-MRSNGFSGDAFT 644



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 107/226 (47%), Gaps = 5/226 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C   RV E  +L  ++  RG V N  +Y TLIHG+C    ++ A  +F EM   GV
Sbjct: 439 IDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGV 498

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+++T ++L+ G      +E A + +F++ +  K    + ++  A+  ++  +C+   V
Sbjct: 499 CPDTITCNILLYGFCENEKLEEA-LELFEVIQMSK----IDLDTVAYNIIIHGMCKGSKV 553

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E + +   +P      +      MI   C       A+ + + M+  G  P   +YN++
Sbjct: 554 DEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTL 613

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLE 226
           + G  K G   ++ +L+ E    G+     T K+  E +C  SD E
Sbjct: 614 IRGCLKAGEIDKSIELISEMRSNGFSGDAFTIKMAEEIICRVSDEE 659


>gi|225454300|ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial [Vitis vinifera]
 gi|297745328|emb|CBI40408.3| unnamed protein product [Vitis vinifera]
          Length = 765

 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 134/503 (26%), Positives = 231/503 (45%), Gaps = 23/503 (4%)

Query: 2   DQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVL 61
           +++ GL      H++F         PN +  T LI   CR+G  D A+ V   +   G +
Sbjct: 252 EEIVGLVSKFAEHEVF---------PNSIWLTQLISRLCRSGRTDRAWDVLHGLMKLGGV 302

Query: 62  PNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVN 121
             + + + L+  + R R+ +R N L+ ++     +E D+  N   F  L++ LC+   V+
Sbjct: 303 MEAASCNALLTALGRAREFKRMNTLLAEM-----KEMDIQPNVVTFGILINHLCKFRRVD 357

Query: 122 EVFRIAEDMPQGKSVN-----EEFACGHMIDSLCRSGRNHGASRVVYVMRKRG-LTPSLV 175
           E   + E M  G+S       +      +ID LC+ GR      +V  MR +    P+ V
Sbjct: 358 EALEVFEKMNGGESNGFLVEPDVITYNTLIDGLCKVGRQEEGLGLVERMRSQPRCMPNTV 417

Query: 176 SYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM 235
           +YN ++ G CK      A +L ++  + G  P+  T   LV+G+C    +  A +    M
Sbjct: 418 TYNCLIDGYCKASMIEAARELFDQMNKDGVPPNVVTLNTLVDGMCKHGRINGAVEFFNEM 477

Query: 236 LSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 295
             K            +RA C + N  + + +   ML+  C PD I   T+I+G  + G++
Sbjct: 478 QGKGLKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKL 537

Query: 296 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN 355
           + A  VL+ M    F +PD V+F  +I G     ++ EA  +L + M   G  P  VTYN
Sbjct: 538 DRASFVLSKMKEAGF-SPDIVSFNVLINGFCRKNKLDEAYEMLKE-MENAGIKPDGVTYN 595

Query: 356 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP 415
            ++    +      A  +   M+  G+V    TY  +I   C +  LDEA + + D+   
Sbjct: 596 TLISHFSKTGDFSTAHRLMKKMVKEGLVPTVVTYGALIHAYCLNGNLDEAMKIFRDMSST 655

Query: 416 SNIHDNYV-YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKRE 474
           S +  N V Y  +I  LCR  ++  A+  + ++   GV PN   +N +  G  + +   +
Sbjct: 656 SKVPPNTVIYNILINSLCRKNQVDLALSLMDDMKVKGVKPNTNTFNAMFKGLQEKNWLSK 715

Query: 475 AYQILREMRKNGLNPDAVTWRIL 497
           A++++  M ++  NPD +T  IL
Sbjct: 716 AFELMDRMTEHACNPDYITMEIL 738



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 140/509 (27%), Positives = 241/509 (47%), Gaps = 41/509 (8%)

Query: 8   SRVGEAHKLFFDM--KSRGH-VP-NVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           SR   +H    D+   S+ H +P +V + T LI  + R   +D ++ V++E+  C     
Sbjct: 134 SREPNSHNKLLDLFKTSKSHKIPLSVNAATLLIRCFGRAQMVDESFLVYNEL--CPSRRL 191

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKE-EEDLSVNNAAFANLV--DSLCREGYV 120
           +   ++L+  + R   V+ A  L+ ++ +   E   + +  +  F+ L   D + R    
Sbjct: 192 THIRNILIDVLFRKGRVDDALHLLDEMLQPKAEFPPNSNTGHIVFSALSKRDKVGRAVDE 251

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E+  +     + +          +I  LCRSGR   A  V++ + K G      S N++
Sbjct: 252 EEIVGLVSKFAEHEVFPNSIWLTQLISRLCRSGRTDRAWDVLHGLMKLGGVMEAASCNAL 311

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +  L +     R   LL E  +    P+  T+ +L+  LC    +++A +V + M     
Sbjct: 312 LTALGRAREFKRMNTLLAEMKEMDIQPNVVTFGILINHLCKFRRVDEALEVFEKM----- 366

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                             N  E    LV       +PDVIT NT+I+G CK+GR EE L 
Sbjct: 367 ------------------NGGESNGFLV-------EPDVITYNTLIDGLCKVGRQEEGLG 401

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           ++  M +   C P+ VT+  +I G      I+ A  L  Q M + G  P +VT N ++ G
Sbjct: 402 LVERMRSQPRCMPNTVTYNCLIDGYCKASMIEAARELFDQ-MNKDGVPPNVVTLNTLVDG 460

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           + +  R+  A E FN M G G+  ++ TY  +I   C  N +++A   +D+++      D
Sbjct: 461 MCKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEAGCSPD 520

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
             VY  +I GL ++GK+  A   L ++ ++G +P+IV +NV+I+G C+ +   EAY++L+
Sbjct: 521 AIVYYTLISGLSQAGKLDRASFVLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLK 580

Query: 481 EMRKNGLNPDAVTWRILDKLHGNRGNDFG 509
           EM   G+ PD VT+  L   H ++  DF 
Sbjct: 581 EMENAGIKPDGVTYNTLIS-HFSKTGDFS 608



 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 128/498 (25%), Positives = 220/498 (44%), Gaps = 52/498 (10%)

Query: 25  HVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRH--CGVLPNSLTYSVLVRGVLRTRDVER 82
           H+ N+     LI    R G +D A  + DEM        PNS T  ++   + +   V R
Sbjct: 193 HIRNI-----LIDVLFRKGRVDDALHLLDEMLQPKAEFPPNSNTGHIVFSALSKRDKVGR 247

Query: 83  A--NVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEF 140
           A     +  L  +  E E    N+     L+  LCR G  +  + +   + +   V E  
Sbjct: 248 AVDEEEIVGLVSKFAEHEVFP-NSIWLTQLISRLCRSGRTDRAWDVLHGLMKLGGVMEAA 306

Query: 141 ACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE- 199
           +C  ++ +L R+      + ++  M++  + P++V++  +++ LCK      A ++ E+ 
Sbjct: 307 SCNALLTALGRAREFKRMNTLLAEMKEMDIQPNVVTFGILINHLCKFRRVDEALEVFEKM 366

Query: 200 --GIQFGYL--PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALC 255
             G   G+L  P   TY  L++GLC     E+   +++ M S                  
Sbjct: 367 NGGESNGFLVEPDVITYNTLIDGLCKVGRQEEGLGLVERMRS------------------ 408

Query: 256 LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA 315
                           Q +C P+ +T N +I+G+CK   IE A + L D +      P+ 
Sbjct: 409 ----------------QPRCMPNTVTYNCLIDGYCKASMIEAA-RELFDQMNKDGVPPNV 451

Query: 316 VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN 375
           VT  T++ G+   GRI  A+   +  M  +G     VTY A++R    +  +E+A E+F+
Sbjct: 452 VTLNTLVDGMCKHGRINGAVEF-FNEMQGKGLKGNAVTYTALIRAFCNVNNIEKAMELFD 510

Query: 376 CMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG 435
            ML  G   D+  Y  +I GL ++ +LD A      +       D   +  +I G CR  
Sbjct: 511 EMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFSPDIVSFNVLINGFCRKN 570

Query: 436 KIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWR 495
           K+ EA   L E+ ++G+ P+ V YN +I    K      A++++++M K GL P  VT+ 
Sbjct: 571 KLDEAYEMLKEMENAGIKPDGVTYNTLISHFSKTGDFSTAHRLMKKMVKEGLVPTVVTYG 630

Query: 496 ILDKLHGNRGN-DFGLRI 512
            L   +   GN D  ++I
Sbjct: 631 ALIHAYCLNGNLDEAMKI 648



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 98/409 (23%), Positives = 181/409 (44%), Gaps = 42/409 (10%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGH-VPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCG 59
           +D LC + R  E   L   M+S+   +PN V+Y  LI GYC+   ++ A ++FD+M   G
Sbjct: 387 IDGLCKVGRQEEGLGLVERMRSQPRCMPNTVTYNCLIDGYCKASMIEAARELFDQMNKDG 446

Query: 60  VLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGY 119
           V PN +T + LV G+ +   +  A     + +  M + + L  N   +  L+ + C    
Sbjct: 447 VPPNVVTLNTLVDGMCKHGRINGA----VEFFNEM-QGKGLKGNAVTYTALIRAFCNVNN 501

Query: 120 VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           + +   + ++M +     +      +I  L ++G+   AS V+  M++ G +P +VS+N 
Sbjct: 502 IEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFSPDIVSFNV 561

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           +++G C+      AY++L+E    G  P   TY  L+       D   A ++++ M+ + 
Sbjct: 562 LINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHFSKTGDFSTAHRLMKKMVKEG 621

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
            V                                   P V+T   +I+ +C  G ++EA+
Sbjct: 622 LV-----------------------------------PTVVTYGALIHAYCLNGNLDEAM 646

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           K+  DM +     P+ V +  +I  L    ++  AL+L+   M  +G  P   T+NA+ +
Sbjct: 647 KIFRDMSSTSKVPPNTVIYNILINSLCRKNQVDLALSLMDD-MKVKGVKPNTNTFNAMFK 705

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRF 408
           GL     + +A E+ + M       D  T  I+ + L    +  + K F
Sbjct: 706 GLQEKNWLSKAFELMDRMTEHACNPDYITMEILTEWLSAVGETAKLKSF 754


>gi|414875533|tpg|DAA52664.1| TPA: hypothetical protein ZEAMMB73_493958 [Zea mays]
          Length = 688

 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 141/495 (28%), Positives = 237/495 (47%), Gaps = 34/495 (6%)

Query: 19  DMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEM--RHCGVLPNSLTYSVLVRGVLR 76
           +M   G  P++V+Y TL+  + + G  D    +  EM  R  G LPN +TY+V++ G+ R
Sbjct: 194 EMLQLGIEPSIVTYNTLLDSFLKEGRKDKVAMLLKEMETRGSGCLPNDVTYNVVITGLTR 253

Query: 77  TRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSV 136
             D+E A     +L E M+  +  S  +  +  L+  L   G V +V+ +  +M     +
Sbjct: 254 KGDLEEAA----ELVEGMRLSKKAS--SFTYNPLITGLLARGCVKKVYDLQLEMENEGIM 307

Query: 137 NEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQL 196
                   MI  L +SG    A      MR  GL P +++YNS+++G CK G    A  L
Sbjct: 308 PTVVTYNAMIHGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNSLLNGYCKAGNLKEALLL 367

Query: 197 LEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRA--- 253
             +  + G  P+  TY + ++G C   DLE+AR + + M  +  +       I ++    
Sbjct: 368 FGDLRRAGLAPTVLTYNIRIDGYCRLGDLEEARILKEEMGEQGCLPNVCTYTILMKGSLN 427

Query: 254 LCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAP 313
           +C +    E  +    ML    QPD    NT I     +G I  AL+ L +++  +  + 
Sbjct: 428 VCSLAMAREFFDE---MLSKGLQPDCFAYNTRICAELILGDIARALE-LREVLMLEGISS 483

Query: 314 DAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL-----RGLFRLRRVE 368
           D VT+  +I GL   G +++A  L  + M   G  P  +TY  ++     RGL R     
Sbjct: 484 DTVTYNILIHGLCKTGNLKDAKELQMK-MVSNGLQPDCITYTCLIHAHCERGLLR----- 537

Query: 369 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA----KRFWDDIVWPSNIHDNYVY 424
           EA+++FN M+  G++  + T+ ++I   C    L  A    ++  ++ V P+ I     Y
Sbjct: 538 EARKIFNNMISDGLLPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEI----TY 593

Query: 425 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484
             +I  LCR G+   A H  +E+++ G+  N   Y ++IDG CK+    +A +   EM +
Sbjct: 594 NVLIHALCRMGRTQLASHHFHEMLERGLVANKYTYTLLIDGNCKVGNWEDAMRFYFEMHQ 653

Query: 485 NGLNPDAVTWRILDK 499
           NG++PD +T + L K
Sbjct: 654 NGIHPDYLTHKALVK 668



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 107/367 (29%), Positives = 183/367 (49%), Gaps = 7/367 (1%)

Query: 142 CGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGI 201
           C H++ +L  + R      V   M + G+ PS+V+YN+++    K G   +   LL+E  
Sbjct: 172 CNHVLRALRDAARWDDICAVHEEMLQLGIEPSIVTYNTLLDSFLKEGRKDKVAMLLKEME 231

Query: 202 QFGY--LPSEHTYKVLVEGLCGESDLEKARKVLQFM-LSKKDVDRTRICNIYLRALCLIK 258
             G   LP++ TY V++ GL  + DLE+A ++++ M LSKK    T   N  +  L    
Sbjct: 232 TRGSGCLPNDVTYNVVITGLTRKGDLEEAAELVEGMRLSKKASSFTY--NPLITGLLARG 289

Query: 259 NPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTF 318
              ++ ++ + M      P V+T N +I+G  + G +E A     +M A     PD +T+
Sbjct: 290 CVKKVYDLQLEMENEGIMPTVVTYNAMIHGLLQSGLVEAAQVKFAEMRAMGLL-PDVITY 348

Query: 319 TTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCML 378
            +++ G    G ++EAL LL+  + + G +P ++TYN  + G  RL  +EEA+ +   M 
Sbjct: 349 NSLLNGYCKAGNLKEAL-LLFGDLRRAGLAPTVLTYNIRIDGYCRLGDLEEARILKEEMG 407

Query: 379 GIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIH 438
             G + +  TY I++ G      L  A+ F+D+++      D + Y   I      G I 
Sbjct: 408 EQGCLPNVCTYTILMKGSLNVCSLAMAREFFDEMLSKGLQPDCFAYNTRICAELILGDIA 467

Query: 439 EAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILD 498
            A+     L+  G++ + V YN++I G CK    ++A ++  +M  NGL PD +T+  L 
Sbjct: 468 RALELREVLMLEGISSDTVTYNILIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLI 527

Query: 499 KLHGNRG 505
             H  RG
Sbjct: 528 HAHCERG 534



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 98/355 (27%), Positives = 168/355 (47%), Gaps = 13/355 (3%)

Query: 10  VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSV 69
           V  A   F +M++ G +P+V++Y +L++GYC+ G +  A  +F ++R  G+ P  LTY++
Sbjct: 326 VEAAQVKFAEMRAMGLLPDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGLAPTVLTYNI 385

Query: 70  LVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVD---SLCREGYVNEVFRI 126
            + G  R  D+E A +L     E M E+  L  N   +  L+    ++C      E F  
Sbjct: 386 RIDGYCRLGDLEEARILK----EEMGEQGCLP-NVCTYTILMKGSLNVCSLAMAREFF-- 438

Query: 127 AEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK 186
            ++M       + FA    I +    G    A  +  V+   G++   V+YN ++HGLCK
Sbjct: 439 -DEMLSKGLQPDCFAYNTRICAELILGDIARALELREVLMLEGISSDTVTYNILIHGLCK 497

Query: 187 HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRI 246
            G    A +L  + +  G  P   TY  L+   C    L +ARK+   M+S   +     
Sbjct: 498 TGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHCERGLLREARKIFNNMISDGLLPSAVT 557

Query: 247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV 306
             + + A C   N          ML+   +P+ IT N +I+  C+MGR + A    ++M+
Sbjct: 558 FTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRMGRTQLASHHFHEML 617

Query: 307 AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
                A +  T+T +I G   VG  ++A+   ++ M Q G  P  +T+ A+++G 
Sbjct: 618 ERGLVA-NKYTYTLLIDGNCKVGNWEDAMRFYFE-MHQNGIHPDYLTHKALVKGF 670



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 83/343 (24%), Positives = 141/343 (41%), Gaps = 40/343 (11%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C    + EA  LF D++  G  P V++Y   I GYCR G+++ A  + +EM   G 
Sbjct: 352 LNGYCKAGNLKEALLLFGDLRRAGLAPTVLTYNIRIDGYCRLGDLEEARILKEEMGEQGC 411

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLM------------FKLWERMKEE----------- 97
           LPN  TY++L++G L    +  A                F    R+  E           
Sbjct: 412 LPNVCTYTILMKGSLNVCSLAMAREFFDEMLSKGLQPDCFAYNTRICAELILGDIARALE 471

Query: 98  -------EDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC 150
                  E +S +   +  L+  LC+ G + +   +   M       +      +I + C
Sbjct: 472 LREVLMLEGISSDTVTYNILIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHC 531

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAY----QLLEEGIQFGYL 206
             G    A ++   M   GL PS V++  I+H  C+ G    AY    ++LEEG++    
Sbjct: 532 ERGLLREARKIFNNMISDGLLPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVE---- 587

Query: 207 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 266
           P+E TY VL+  LC     + A      ML +  V       + +   C + N  + +  
Sbjct: 588 PNEITYNVLIHALCRMGRTQLASHHFHEMLERGLVANKYTYTLLIDGNCKVGNWEDAMRF 647

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK 309
              M Q    PD +T   ++ GF   G +   ++ L+ ++ G+
Sbjct: 648 YFEMHQNGIHPDYLTHKALVKGF--DGHVHHTIEYLDIVILGE 688


>gi|356497979|ref|XP_003517833.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 595

 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 129/500 (25%), Positives = 239/500 (47%), Gaps = 13/500 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D L  +  V  A   +  M +    P V  +  L     +      A  +   M + GV
Sbjct: 50  LDSLRNVKSVDVALDFYHKMVTMKPFPCVKDFNLLFGIVAKMKHYTTAISLIKHMSYIGV 109

Query: 61  LPNSLTYSVLVRGVLR-TRDVERANVL--MFKLWERMKEEEDLSVNNAAFANLVDSLCRE 117
            PN  T+++++  + R    V   +VL  MFK+         +  +   F  +V+ LC E
Sbjct: 110 KPNVPTHNIVINCLCRLNHTVFGFSVLGLMFKI--------GVEPSIVTFTTIVNGLCVE 161

Query: 118 GYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
           G V +  R  + +      ++ +  G +I+ LC+ G +  A   +  M ++     + +Y
Sbjct: 162 GNVAQAIRFVDHLKDMGYESDRYTRGAIINGLCKVGHSSAALSYLKKMEEQNCNLDVTAY 221

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
           N++V GLCK G    A+ L  +    G  P   TY  L+ GLC     ++A  +L  M+ 
Sbjct: 222 NAVVDGLCKDGMVFEAWDLFSQMTGKGIQPDLFTYNCLIHGLCNFDRWKEAAPLLANMMR 281

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
           K  +   +  N+           +   ++  FM     + DV+T +++I   C + ++++
Sbjct: 282 KGIMPDVQTFNVIGGRFLKTGMISRAKSIFSFMGHMGIEHDVVTYSSIIGVHCMLNQMKD 341

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           A++V  D++  K C P+ VT+T++I G   +  + +A+  L + M   G  P IVT+N +
Sbjct: 342 AMEVF-DLMIRKGCLPNIVTYTSLIHGWCEIKNMNKAMYFLGE-MVNNGLDPNIVTWNTL 399

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 417
           + G  +  +   AKE+F  M   G + D  T AI++DGL + +   EA   + ++   ++
Sbjct: 400 IGGFCKAGKPVAAKELFFVMHKHGQLPDLQTCAIILDGLFKCHFHSEAMSLFRELEKMNS 459

Query: 418 IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQ 477
             D  +Y+ ++ G+C SGK+++A+     L   GV  ++V YN++I+G CK  +  +A  
Sbjct: 460 DLDIIIYSIILNGMCSSGKLNDALELFSYLSSKGVKIDVVTYNIMINGLCKEGLLDDAED 519

Query: 478 ILREMRKNGLNPDAVTWRIL 497
           +L +M +NG  PD  T+ + 
Sbjct: 520 LLMKMEENGCPPDECTYNVF 539



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 118/482 (24%), Positives = 222/482 (46%), Gaps = 15/482 (3%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M   G  PNV ++  +I+  CR       + V   M   GV P+ +T++ +V G+    +
Sbjct: 104 MSYIGVKPNVPTHNIVINCLCRLNHTVFGFSVLGLMFKIGVEPSIVTFTTIVNGLCVEGN 163

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
           V +A +      + M  E D     A    +++ LC+ G+ +      + M +     + 
Sbjct: 164 VAQA-IRFVDHLKDMGYESDRYTRGA----IINGLCKVGHSSAALSYLKKMEEQNCNLDV 218

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
            A   ++D LC+ G    A  +   M  +G+ P L +YN ++HGLC       A  LL  
Sbjct: 219 TAYNAVVDGLCKDGMVFEAWDLFSQMTGKGIQPDLFTYNCLIHGLCNFDRWKEAAPLLAN 278

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM----LSKKDVDRTRICNIYLRALC 255
            ++ G +P   T+ V+         + +A+ +  FM    +    V  + I  ++    C
Sbjct: 279 MMRKGIMPDVQTFNVIGGRFLKTGMISRAKSIFSFMGHMGIEHDVVTYSSIIGVH----C 334

Query: 256 LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA 315
           ++    + + V   M++  C P+++T  ++I+G+C++  + +A+  L +MV      P+ 
Sbjct: 335 MLNQMKDAMEVFDLMIRKGCLPNIVTYTSLIHGWCEIKNMNKAMYFLGEMVNNGL-DPNI 393

Query: 316 VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN 375
           VT+ T+I G    G+   A  L + VM + G  P + T   +L GLF+     EA  +F 
Sbjct: 394 VTWNTLIGGFCKAGKPVAAKELFF-VMHKHGQLPDLQTCAIILDGLFKCHFHSEAMSLFR 452

Query: 376 CMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG 435
            +  +    D   Y+I+++G+C S +L++A   +  +       D   Y  MI GLC+ G
Sbjct: 453 ELEKMNSDLDIIIYSIILNGMCSSGKLNDALELFSYLSSKGVKIDVVTYNIMINGLCKEG 512

Query: 436 KIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWR 495
            + +A   L ++ ++G  P+   YNV + G  +     ++ + L  M+  G   +A T +
Sbjct: 513 LLDDAEDLLMKMEENGCPPDECTYNVFVQGLLRRYEISKSTKYLMFMKGKGFRANATTTK 572

Query: 496 IL 497
           +L
Sbjct: 573 LL 574



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 96/394 (24%), Positives = 173/394 (43%), Gaps = 42/394 (10%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    V EA  LF  M  +G  P++ +Y  LIHG C       A  +   M   G+
Sbjct: 225 VDGLCKDGMVFEAWDLFSQMTGKGIQPDLFTYNCLIHGLCNFDRWKEAAPLLANMMRKGI 284

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P+  T++V+    L+T  + RA  + F     M  E D+      +++++   C     
Sbjct: 285 MPDVQTFNVIGGRFLKTGMISRAKSI-FSFMGHMGIEHDV----VTYSSIIGVHCM---- 335

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                    + Q K   E F                       +M ++G  P++V+Y S+
Sbjct: 336 ---------LNQMKDAMEVFD----------------------LMIRKGCLPNIVTYTSL 364

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +HG C+     +A   L E +  G  P+  T+  L+ G C       A+++   M     
Sbjct: 365 IHGWCEIKNMNKAMYFLGEMVNNGLDPNIVTWNTLIGGFCKAGKPVAAKELFFVMHKHGQ 424

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           +   + C I L  L      +E +++   + +     D+I  + ++NG C  G++ +AL+
Sbjct: 425 LPDLQTCAIILDGLFKCHFHSEAMSLFRELEKMNSDLDIIIYSIILNGMCSSGKLNDALE 484

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           + +  ++ K    D VT+  +I GL   G + +A +LL + M + G  P   TYN  ++G
Sbjct: 485 LFS-YLSSKGVKIDVVTYNIMINGLCKEGLLDDAEDLLMK-MEENGCPPDECTYNVFVQG 542

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVID 394
           L R   + ++ +    M G G  A++TT  ++I+
Sbjct: 543 LLRRYEISKSTKYLMFMKGKGFRANATTTKLLIN 576



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/262 (26%), Positives = 108/262 (41%), Gaps = 22/262 (8%)

Query: 251 LRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVIN--------GFCKMGRIEEALKVL 302
           LR   L  NPT       F+L         +    IN            +  ++ AL   
Sbjct: 13  LRYFALSSNPTH------FLLHPSHSSSTFSTYASINTSRAQFLDSLRNVKSVDVALDFY 66

Query: 303 NDMVAGKF--CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           + MV  K   C  D      ++FG++   +       L + M   G  P + T+N V+  
Sbjct: 67  HKMVTMKPFPCVKDF----NLLFGIVAKMKHYTTAISLIKHMSYIGVKPNVPTHNIVINC 122

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L RL        V   M  IGV     T+  +++GLC    + +A RF D +       D
Sbjct: 123 LCRLNHTVFGFSVLGLMFKIGVEPSIVTFTTIVNGLCVEGNVAQAIRFVDHLKDMGYESD 182

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
            Y   A+I GLC+ G    A+ +L ++ +     ++  YN V+DG CK  M  EA+ +  
Sbjct: 183 RYTRGAIINGLCKVGHSSAALSYLKKMEEQNCNLDVTAYNAVVDGLCKDGMVFEAWDLFS 242

Query: 481 EMRKNGLNPDAVTWRILDKLHG 502
           +M   G+ PD  T+  L  +HG
Sbjct: 243 QMTGKGIQPDLFTYNCL--IHG 262



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 113/267 (42%), Gaps = 2/267 (0%)

Query: 235 MLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGR 294
           M++ K     +  N+    +  +K+ T  ++++  M     +P+V T N VIN  C++  
Sbjct: 69  MVTMKPFPCVKDFNLLFGIVAKMKHYTTAISLIKHMSYIGVKPNVPTHNIVINCLCRLNH 128

Query: 295 IEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTY 354
                 VL  M       P  VTFTTI+ GL   G + +A+  +   +   GY     T 
Sbjct: 129 TVFGFSVLGLMFKIG-VEPSIVTFTTIVNGLCVEGNVAQAIRFVDH-LKDMGYESDRYTR 186

Query: 355 NAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVW 414
            A++ GL ++     A      M       D T Y  V+DGLC+   + EA   +  +  
Sbjct: 187 GAIINGLCKVGHSSAALSYLKKMEEQNCNLDVTAYNAVVDGLCKDGMVFEAWDLFSQMTG 246

Query: 415 PSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKRE 474
                D + Y  +I GLC   +  EA   L  ++  G+ P++  +NV+     K  M   
Sbjct: 247 KGIQPDLFTYNCLIHGLCNFDRWKEAAPLLANMMRKGIMPDVQTFNVIGGRFLKTGMISR 306

Query: 475 AYQILREMRKNGLNPDAVTWRILDKLH 501
           A  I   M   G+  D VT+  +  +H
Sbjct: 307 AKSIFSFMGHMGIEHDVVTYSSIIGVH 333


>gi|358346655|ref|XP_003637381.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503316|gb|AES84519.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1023

 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 133/512 (25%), Positives = 246/512 (48%), Gaps = 36/512 (7%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           R   A   F  M++ G VP +  + TL++ +  +G +     ++ +M  CGV+P+  + +
Sbjct: 74  RFSTASATFSHMRALGLVPTLPFWNTLLYQFNASGLVSQVKLMYSDMLFCGVVPDVFSVN 133

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
           VLV  + +  D++ A          ++  + + ++N  +  ++   C++G V++ F +  
Sbjct: 134 VLVHSLCKVGDLDLA-------LGYLRNNDVVDIDNVTYNTVIWGFCQKGLVDQGFGLLS 186

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
           +M +     +   C  ++   CR G    A  V+Y +   G+T  ++  N+++ G C+ G
Sbjct: 187 EMVKRGLCFDSITCNILVKGYCRIGLVQYAEWVMYNLVDGGVTKDVIGLNTLIDGYCEAG 246

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS-KKDVDRTR-- 245
              +A +L+E   +        TY  L++  C   DL +A  +   +L   KD DR +  
Sbjct: 247 LMSQATELIENSWRSDVKIDIVTYNTLLKAFCKTGDLTRAESLFNEILGFWKDEDRLKNN 306

Query: 246 -------ICNI---------YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGF 289
                  I N+          + A C      E  ++   M+     PDV+T ++++ GF
Sbjct: 307 DVVTQNEIKNLQPTLVTYTTLIAAYCKFVGVEESHSLYKKMIMNGIMPDVVTCSSILYGF 366

Query: 290 CKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSP 349
           C+ G++ EA  +  +M       P+ V++ TII  L   GR+ EA NL  Q M  RG S 
Sbjct: 367 CRHGKLTEAAVLFREMYEMGL-DPNHVSYATIINSLFKSGRVMEAFNLQSQ-MVVRGISF 424

Query: 350 GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA---- 405
            IVT   V+ GLF++ + +EA+EVF  +L + +  +  TY+ ++DG C+  +++ A    
Sbjct: 425 DIVTCTTVMDGLFKVGKTKEAEEVFETILKLNLAPNCVTYSALLDGYCKLGKMELAELVL 484

Query: 406 KRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDG 465
           ++   + V P+ I     ++++I G  + G + +AV  L E+V   V PN + Y ++IDG
Sbjct: 485 QKMEKEHVPPNVI----TFSSIINGYAKKGMLSKAVDVLREMVQRNVMPNTIVYAILIDG 540

Query: 466 ACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
             K   +  A    +EM+   L    V + IL
Sbjct: 541 YFKAGEQDVADDFCKEMKSRRLEESNVIFDIL 572



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 125/493 (25%), Positives = 245/493 (49%), Gaps = 8/493 (1%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C    V E+H L+  M   G +P+VV+ +++++G+CR G++  A  +F EM   G+ PN 
Sbjct: 332 CKFVGVEESHSLYKKMIMNGIMPDVVTCSSILYGFCRHGKLTEAAVLFREMYEMGLDPNH 391

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           ++Y+ ++  + ++  V  A    F L  +M     +S +      ++D L + G   E  
Sbjct: 392 VSYATIINSLFKSGRVMEA----FNLQSQMVVR-GISFDIVTCTTVMDGLFKVGKTKEAE 446

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
            + E + +            ++D  C+ G+   A  V+  M K  + P++++++SI++G 
Sbjct: 447 EVFETILKLNLAPNCVTYSALLDGYCKLGKMELAELVLQKMEKEHVPPNVITFSSIINGY 506

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
            K G   +A  +L E +Q   +P+   Y +L++G     + + A    + M S++  +  
Sbjct: 507 AKKGMLSKAVDVLREMVQRNVMPNTIVYAILIDGYFKAGEQDVADDFCKEMKSRRLEESN 566

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
            I +I L  L  +    E  ++++ M      PD++   ++I+G+ K G    AL ++ +
Sbjct: 567 VIFDILLNNLKRVGRMDEARSLIIDMYSKGIDPDIVNYASLIDGYFKEGNQLAALSIVQE 626

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
           M   K    D V +  +I GLL +G+       +   M + G +P  +TYN ++      
Sbjct: 627 M-KEKNIRFDVVAYNALIKGLLRLGKYDP--RYVCSRMIELGLAPDCITYNTIINTYCIK 683

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY 424
            + E+A ++ N M   G++ ++ TY I+I GLC++  +++A+   D+++    +     +
Sbjct: 684 GKTEDALDILNEMKSYGIMPNAVTYNILIGGLCKTGAVEKAESALDEMLVMEFVPTPITH 743

Query: 425 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484
             ++K   RS K  + +    +LV SG+  ++  YN +I   C+L M R+A  +L EM K
Sbjct: 744 KFLVKAYSRSEKADKILQIHEKLVASGLELSLTVYNTLITVFCRLGMTRKAKVVLDEMVK 803

Query: 485 NGLNPDAVTWRIL 497
            G++ D VT+  L
Sbjct: 804 RGISADLVTYNAL 816



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 134/512 (26%), Positives = 236/512 (46%), Gaps = 27/512 (5%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C +  V  A  + +++   G   +V+   TLI GYC  G M  A ++ +      V  + 
Sbjct: 208 CRIGLVQYAEWVMYNLVDGGVTKDVIGLNTLIDGYCEAGLMSQATELIENSWRSDVKIDI 267

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNN--------------AAFANL 110
           +TY+ L++   +T D+ RA  L  ++    K+E+ L  N+                +  L
Sbjct: 268 VTYNTLLKAFCKTGDLTRAESLFNEILGFWKDEDRLKNNDVVTQNEIKNLQPTLVTYTTL 327

Query: 111 VDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGL 170
           + + C+   V E   + + M     + +   C  ++   CR G+   A+ +   M + GL
Sbjct: 328 IAAYCKFVGVEESHSLYKKMIMNGIMPDVVTCSSILYGFCRHGKLTEAAVLFREMYEMGL 387

Query: 171 TPSLVSYNSIVHGLCKHGGCMRAY----QLLEEGIQFGYLPSEHTYKVLVEGLCGESDLE 226
            P+ VSY +I++ L K G  M A+    Q++  GI F  +    T   +++GL      +
Sbjct: 388 DPNHVSYATIINSLFKSGRVMEAFNLQSQMVVRGISFDIV----TCTTVMDGLFKVGKTK 443

Query: 227 KARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVI 286
           +A +V + +L           +  L   C +        VL  M +    P+VIT +++I
Sbjct: 444 EAEEVFETILKLNLAPNCVTYSALLDGYCKLGKMELAELVLQKMEKEHVPPNVITFSSII 503

Query: 287 NGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
           NG+ K G + +A+ VL +MV  +   P+ + +  +I G    G  Q+  +   + M  R 
Sbjct: 504 NGYAKKGMLSKAVDVLREMVQ-RNVMPNTIVYAILIDGYFKAGE-QDVADDFCKEMKSRR 561

Query: 347 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG-LCESNQLDEA 405
                V ++ +L  L R+ R++EA+ +   M   G+  D   YA +IDG   E NQL  A
Sbjct: 562 LEESNVIFDILLNNLKRVGRMDEARSLIIDMYSKGIDPDIVNYASLIDGYFKEGNQL-AA 620

Query: 406 KRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDG 465
                ++   +   D   Y A+IKGL R GK ++  +    +++ G+ P+ + YN +I+ 
Sbjct: 621 LSIVQEMKEKNIRFDVVAYNALIKGLLRLGK-YDPRYVCSRMIELGLAPDCITYNTIINT 679

Query: 466 ACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            C      +A  IL EM+  G+ P+AVT+ IL
Sbjct: 680 YCIKGKTEDALDILNEMKSYGIMPNAVTYNIL 711



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 135/533 (25%), Positives = 241/533 (45%), Gaps = 49/533 (9%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C L ++  A  +   M+     PNV++++++I+GY + G +  A  V  EM    V
Sbjct: 468 LDGYCKLGKMELAELVLQKMEKEHVPPNVITFSSIINGYAKKGMLSKAVDVLREMVQRNV 527

Query: 61  LPNSLTYSVLVRGV---------------LRTRDVERANVLM------FKLWERMKEEED 99
           +PN++ Y++L+ G                +++R +E +NV+        K   RM E   
Sbjct: 528 MPNTIVYAILIDGYFKAGEQDVADDFCKEMKSRRLEESNVIFDILLNNLKRVGRMDEARS 587

Query: 100 LSVNNAA---------FANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC 150
           L ++  +         +A+L+D   +EG       I ++M +     +  A   +I  L 
Sbjct: 588 LIIDMYSKGIDPDIVNYASLIDGYFKEGNQLAALSIVQEMKEKNIRFDVVAYNALIKGLL 647

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
           R G+ +    V   M + GL P  ++YN+I++  C  G    A  +L E   +G +P+  
Sbjct: 648 RLGK-YDPRYVCSRMIELGLAPDCITYNTIINTYCIKGKTEDALDILNEMKSYGIMPNAV 706

Query: 211 TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM 270
           TY +L+ GLC    +EKA   L  ML  + V         ++A    +   ++L +   +
Sbjct: 707 TYNILIGGLCKTGAVEKAESALDEMLVMEFVPTPITHKFLVKAYSRSEKADKILQIHEKL 766

Query: 271 LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR 330
           + +  +  +   NT+I  FC++G   +A  VL++MV     A D VT+  +I G      
Sbjct: 767 VASGLELSLTVYNTLITVFCRLGMTRKAKVVLDEMVKRGISA-DLVTYNALIRGYCTGSH 825

Query: 331 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGL----FRLRRVEEAKEVFNCMLGIGVVADS 386
           +++AL   Y  M   G +P I TYN +L GL         +EE +++ + M   G+V ++
Sbjct: 826 VEKALKT-YSQMFVDGIAPNITTYNTLLGGLSNAGLMEEMMEETEKLVSEMNERGLVPNA 884

Query: 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE 446
            TY I++ G        +      +++    +     Y  +I    +SGK+ EA   L +
Sbjct: 885 ATYDILVSGYGRVGNRKKTIILHIEMITKGFVPTLKTYNVLISDYAKSGKMIEARELLND 944

Query: 447 LVDSGVTPNIVCYNVV------------IDGACKLSMKREAYQILREMRKNGL 487
           L+  G  PN   Y+++            ID + K S + E  ++L EM + GL
Sbjct: 945 LLTKGRIPNSFTYDILTCGWLNLSYEPEIDRSLKRSYEIEVKKLLIEMGRKGL 997



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 116/493 (23%), Positives = 232/493 (47%), Gaps = 34/493 (6%)

Query: 30  VSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFK 89
           V+Y T+I G+C+ G +D  + +  EM   G+  +S+T ++LV+G  R   V+ A  +M+ 
Sbjct: 163 VTYNTVIWGFCQKGLVDQGFGLLSEMVKRGLCFDSITCNILVKGYCRIGLVQYAEWVMYN 222

Query: 90  LWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSL 149
           L +    ++ + +N      L+D  C  G +++   + E+  +     +      ++ + 
Sbjct: 223 LVDGGVTKDVIGLNT-----LIDGYCEAGLMSQATELIENSWRSDVKIDIVTYNTLLKAF 277

Query: 150 CRSGRNHGASR-------------------VVYVMRKRGLTPSLVSYNSIVHGLCKHGGC 190
           C++G    A                     VV     + L P+LV+Y +++   CK  G 
Sbjct: 278 CKTGDLTRAESLFNEILGFWKDEDRLKNNDVVTQNEIKNLQPTLVTYTTLIAAYCKFVGV 337

Query: 191 MRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKA----RKVLQFMLSKKDVDRTRI 246
             ++ L ++ I  G +P   T   ++ G C    L +A    R++ +  L    V    I
Sbjct: 338 EESHSLYKKMIMNGIMPDVVTCSSILYGFCRHGKLTEAAVLFREMYEMGLDPNHVSYATI 397

Query: 247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV 306
            N   ++        E  N+   M+      D++T  TV++G  K+G+ +EA +V   ++
Sbjct: 398 INSLFKS----GRVMEAFNLQSQMVVRGISFDIVTCTTVMDGLFKVGKTKEAEEVFETIL 453

Query: 307 AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 366
                AP+ VT++ ++ G   +G+++ A  L+ Q M +    P ++T+++++ G  +   
Sbjct: 454 KLNL-APNCVTYSALLDGYCKLGKMELA-ELVLQKMEKEHVPPNVITFSSIINGYAKKGM 511

Query: 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAA 426
           + +A +V   M+   V+ ++  YAI+IDG  ++ + D A  F  ++        N ++  
Sbjct: 512 LSKAVDVLREMVQRNVMPNTIVYAILIDGYFKAGEQDVADDFCKEMKSRRLEESNVIFDI 571

Query: 427 MIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG 486
           ++  L R G++ EA   + ++   G+ P+IV Y  +IDG  K   +  A  I++EM++  
Sbjct: 572 LLNNLKRVGRMDEARSLIIDMYSKGIDPDIVNYASLIDGYFKEGNQLAALSIVQEMKEKN 631

Query: 487 LNPDAVTWRILDK 499
           +  D V +  L K
Sbjct: 632 IRFDVVAYNALIK 644



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 100/410 (24%), Positives = 185/410 (45%), Gaps = 27/410 (6%)

Query: 117 EGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVS 176
            G V++V  +  DM     V + F+   ++ SLC+ G    A  + Y+     +    V+
Sbjct: 107 SGLVSQVKLMYSDMLFCGVVPDVFSVNVLVHSLCKVGDLDLA--LGYLRNNDVVDIDNVT 164

Query: 177 YNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFML 236
           YN+++ G C+ G   + + LL E ++ G      T  +LV+G C    ++ A  V+  ++
Sbjct: 165 YNTVIWGFCQKGLVDQGFGLLSEMVKRGLCFDSITCNILVKGYCRIGLVQYAEWVMYNLV 224

Query: 237 SKKDVDRTRICNIYLRALC---LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMG 293
                      N  +   C   L+   TEL+       ++  + D++T NT++  FCK G
Sbjct: 225 DGGVTKDVIGLNTLIDGYCEAGLMSQATELIEN---SWRSDVKIDIVTYNTLLKAFCKTG 281

Query: 294 RIEEALKVLNDMVAG------------------KFCAPDAVTFTTIIFGLLNVGRIQEAL 335
            +  A  + N+++                    K   P  VT+TT+I        ++E+ 
Sbjct: 282 DLTRAESLFNEILGFWKDEDRLKNNDVVTQNEIKNLQPTLVTYTTLIAAYCKFVGVEES- 340

Query: 336 NLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG 395
           + LY+ M   G  P +VT +++L G  R  ++ EA  +F  M  +G+  +  +YA +I+ 
Sbjct: 341 HSLYKKMIMNGIMPDVVTCSSILYGFCRHGKLTEAAVLFREMYEMGLDPNHVSYATIINS 400

Query: 396 LCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN 455
           L +S ++ EA      +V      D      ++ GL + GK  EA      ++   + PN
Sbjct: 401 LFKSGRVMEAFNLQSQMVVRGISFDIVTCTTVMDGLFKVGKTKEAEEVFETILKLNLAPN 460

Query: 456 IVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
            V Y+ ++DG CKL     A  +L++M K  + P+ +T+  +   +  +G
Sbjct: 461 CVTYSALLDGYCKLGKMELAELVLQKMEKEHVPPNVITFSSIINGYAKKG 510



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/241 (23%), Positives = 106/241 (43%), Gaps = 8/241 (3%)

Query: 268 VFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLN 327
           +F+  T+    V    T+I  +    R   A    + M A     P    + T+++   N
Sbjct: 48  IFIPPTKTHLYVSFFCTLIRLYLTHDRFSTASATFSHMRALGL-VPTLPFWNTLLYQF-N 105

Query: 328 VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVF--NCMLGIGVVAD 385
              +   + L+Y  M   G  P + + N ++  L ++  ++ A      N ++ I    D
Sbjct: 106 ASGLVSQVKLMYSDMLFCGVVPDVFSVNVLVHSLCKVGDLDLALGYLRNNDVVDI----D 161

Query: 386 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY 445
           + TY  VI G C+   +D+      ++V      D+     ++KG CR G +  A   +Y
Sbjct: 162 NVTYNTVIWGFCQKGLVDQGFGLLSEMVKRGLCFDSITCNILVKGYCRIGLVQYAEWVMY 221

Query: 446 ELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
            LVD GVT +++  N +IDG C+  +  +A +++    ++ +  D VT+  L K     G
Sbjct: 222 NLVDGGVTKDVIGLNTLIDGYCEAGLMSQATELIENSWRSDVKIDIVTYNTLLKAFCKTG 281

Query: 506 N 506
           +
Sbjct: 282 D 282


>gi|357130032|ref|XP_003566662.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 859

 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 129/501 (25%), Positives = 235/501 (46%), Gaps = 43/501 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGH--VPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHC 58
           +  LCG SR  EA  +   M   G    P+VVS+ T+IHG+ + GE+  A  + +EM   
Sbjct: 234 IKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVIHGFFKQGEVSKACNLINEMVQK 293

Query: 59  GVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREG 118
           GV P+ +TY+ +V  + + R +++A +++ ++ ++  E + L+                 
Sbjct: 294 GVEPDVVTYNSIVDALCKARAMDKAELVLRQMVDKGVEPDGLTYT--------------- 338

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
                           ++   ++C         SG    ++++   M  +GL P +V++N
Sbjct: 339 ----------------AIIHGYSC---------SGHWKESAKMFRKMTSKGLIPGIVTFN 373

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
           S +  LCKHG    A ++ +     G++P   +Y +L+ G   E        +   M  K
Sbjct: 374 SFMSSLCKHGRSKDAEEIFQYMTTKGHMPDLVSYSILLHGYATEGRFADMNNLFHSMADK 433

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
             V      NI + A        E + V   M     +PDV+T +T+I+ FC+MGR+ +A
Sbjct: 434 GIVANCHCFNILISAHAKRGMMDEAMLVFTEMQGQGVRPDVVTYSTLISAFCRMGRLADA 493

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
           ++  + M++     P+ V + ++I G    G + +A  L+ ++M +    P IV +++++
Sbjct: 494 MEKFSQMISIGL-EPNTVVYHSLIHGFCMHGDLVKAKELVSEMMSKGIPRPNIVFFSSII 552

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
             L    RV +A +VFN ++ IG      T+  +IDG C   ++++A    D +V     
Sbjct: 553 HSLCNEGRVMDAHDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIE 612

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI 478
            D   Y  ++ G C+SGKI + +    E++   V P  V Y++V+DG         A ++
Sbjct: 613 PDVVTYNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYSIVLDGLFHAGRTSAAKKM 672

Query: 479 LREMRKNGLNPDAVTWRILDK 499
             EM  +G   D  T++IL K
Sbjct: 673 FHEMIDSGTAVDIDTYKILLK 693



 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 130/496 (26%), Positives = 235/496 (47%), Gaps = 16/496 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    + +A  +   M  +G  P+ ++YT +IHGY  +G    + K+F +M   G+
Sbjct: 306 VDALCKARAMDKAELVLRQMVDKGVEPDGLTYTAIIHGYSCSGHWKESAKMFRKMTSKGL 365

Query: 61  LPNSLTYSVLVRGVL---RTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCRE 117
           +P  +T++  +  +    R++D E     +F+         DL     +++ L+     E
Sbjct: 366 IPGIVTFNSFMSSLCKHGRSKDAEE----IFQYMTTKGHMPDL----VSYSILLHGYATE 417

Query: 118 GYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
           G   ++  +   M     V        +I +  + G    A  V   M+ +G+ P +V+Y
Sbjct: 418 GRFADMNNLFHSMADKGIVANCHCFNILISAHAKRGMMDEAMLVFTEMQGQGVRPDVVTY 477

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
           ++++   C+ G    A +   + I  G  P+   Y  L+ G C   DL KA++++  M+S
Sbjct: 478 STLISAFCRMGRLADAMEKFSQMISIGLEPNTVVYHSLIHGFCMHGDLVKAKELVSEMMS 537

Query: 238 KKDVDRTRIC--NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 295
            K + R  I   +  + +LC      +  +V   ++    +P ++T N++I+G+C +G++
Sbjct: 538 -KGIPRPNIVFFSSIIHSLCNEGRVMDAHDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKM 596

Query: 296 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN 355
           E+A  VL+ MV+     PD VT+ T++ G    G+I + L +L++ M  +   P  VTY+
Sbjct: 597 EKAFGVLDAMVSVGI-EPDVVTYNTLVSGYCKSGKIDDGL-ILFREMLHKKVKPTTVTYS 654

Query: 356 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP 415
            VL GLF   R   AK++F+ M+  G   D  TY I++ GLC ++  DEA   +  +   
Sbjct: 655 IVLDGLFHAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKGLCRNDLTDEAITLFHKLGAM 714

Query: 416 SNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREA 475
               D  +   +I  L +  +  EA      +  SG+ PN+  Y V+I    K     EA
Sbjct: 715 DCKFDITILNTVINALYKVRRREEANDLFAAISTSGLVPNVSTYGVMIHNLLKEGSVEEA 774

Query: 476 YQILREMRKNGLNPDA 491
             +   M K+G  P +
Sbjct: 775 DTMFSSMEKSGCAPSS 790



 Score =  175 bits (443), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 119/454 (26%), Positives = 212/454 (46%), Gaps = 10/454 (2%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           E+ K+F  M S+G +P +V++ + +   C+ G    A ++F  M   G +P+ ++YS+L+
Sbjct: 352 ESAKMFRKMTSKGLIPGIVTFNSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDLVSYSILL 411

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP 131
            G          N L   + ++      +  N   F  L+ +  + G ++E   +  +M 
Sbjct: 412 HGYATEGRFADMNNLFHSMADK-----GIVANCHCFNILISAHAKRGMMDEAMLVFTEM- 465

Query: 132 QGKSVNEEFAC-GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGC 190
           QG+ V  +      +I + CR GR   A      M   GL P+ V Y+S++HG C HG  
Sbjct: 466 QGQGVRPDVVTYSTLISAFCRMGRLADAMEKFSQMISIGLEPNTVVYHSLIHGFCMHGDL 525

Query: 191 MRAYQLLEEGIQFGYL-PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNI 249
           ++A +L+ E +  G   P+   +  ++  LC E  +  A  V   ++   D       N 
Sbjct: 526 VKAKELVSEMMSKGIPRPNIVFFSSIIHSLCNEGRVMDAHDVFNLVIHIGDRPTIVTFNS 585

Query: 250 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK 309
            +   CL+    +   VL  M+    +PDV+T NT+++G+CK G+I++ L +  +M+  K
Sbjct: 586 LIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTYNTLVSGYCKSGKIDDGLILFREMLHKK 645

Query: 310 FCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEE 369
              P  VT++ ++ GL + GR   A  + ++ M   G +  I TY  +L+GL R    +E
Sbjct: 646 V-KPTTVTYSIVLDGLFHAGRTSAAKKMFHE-MIDSGTAVDIDTYKILLKGLCRNDLTDE 703

Query: 370 AKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIK 429
           A  +F+ +  +    D T    VI+ L +  + +EA   +  I     + +   Y  MI 
Sbjct: 704 AITLFHKLGAMDCKFDITILNTVINALYKVRRREEANDLFAAISTSGLVPNVSTYGVMIH 763

Query: 430 GLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463
            L + G + EA      +  SG  P+    N +I
Sbjct: 764 NLLKEGSVEEADTMFSSMEKSGCAPSSRLLNDII 797



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 89/327 (27%), Positives = 147/327 (44%), Gaps = 38/327 (11%)

Query: 208 SEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVL 267
           S HTY +L++  C     +        +L      RT   N +L+ LC  K   E ++VL
Sbjct: 155 SVHTYGILMDCCCRARRPDLGPAFFARLLRAGLRTRTIEANTFLKCLCHAKRTDEAVDVL 214

Query: 268 VF-MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA-GKFCAPDAVTFTTIIFGL 325
           +  M    C P+ I+ NTVI   C   R +EAL ++  M   G  C+PD V+F T+I G 
Sbjct: 215 LHRMSDLGCVPNAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVIHGF 274

Query: 326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 385
              G + +A NL+ + M Q+G  P +VTYN+++  L + R +++A+ V   M+  GV  D
Sbjct: 275 FKQGEVSKACNLINE-MVQKGVEPDVVTYNSIVDALCKARAMDKAELVLRQMVDKGVEPD 333

Query: 386 STTYAIVIDG-----------------------------------LCESNQLDEAKRFWD 410
             TY  +I G                                   LC+  +  +A+  + 
Sbjct: 334 GLTYTAIIHGYSCSGHWKESAKMFRKMTSKGLIPGIVTFNSFMSSLCKHGRSKDAEEIFQ 393

Query: 411 DIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLS 470
            +    ++ D   Y+ ++ G    G+  +  +  + + D G+  N  C+N++I    K  
Sbjct: 394 YMTTKGHMPDLVSYSILLHGYATEGRFADMNNLFHSMADKGIVANCHCFNILISAHAKRG 453

Query: 471 MKREAYQILREMRKNGLNPDAVTWRIL 497
           M  EA  +  EM+  G+ PD VT+  L
Sbjct: 454 MMDEAMLVFTEMQGQGVRPDVVTYSTL 480



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 105/228 (46%), Gaps = 5/228 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C + ++ +A  +   M S G  P+VV+Y TL+ GYC++G++D    +F EM H  V
Sbjct: 587 IDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTYNTLVSGYCKSGKIDDGLILFREMLHKKV 646

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P ++TYS+++ G+        A     K++  M  +   +V+   +  L+  LCR    
Sbjct: 647 KPTTVTYSIVLDGLFHAGRTSAAK----KMFHEMI-DSGTAVDIDTYKILLKGLCRNDLT 701

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E   +   +       +      +I++L +  R   A+ +   +   GL P++ +Y  +
Sbjct: 702 DEAITLFHKLGAMDCKFDITILNTVINALYKVRRREEANDLFAAISTSGLVPNVSTYGVM 761

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKA 228
           +H L K G    A  +     + G  PS      ++  L  + D+ KA
Sbjct: 762 IHNLLKEGSVEEADTMFSSMEKSGCAPSSRLLNDIIRMLLQKGDIVKA 809



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 48/90 (53%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ L  + R  EA+ LF  + + G VPNV +Y  +IH   + G ++ A  +F  M   G 
Sbjct: 727 INALYKVRRREEANDLFAAISTSGLVPNVSTYGVMIHNLLKEGSVEEADTMFSSMEKSGC 786

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKL 90
            P+S   + ++R +L+  D+ +A   M K+
Sbjct: 787 APSSRLLNDIIRMLLQKGDIVKAGYYMSKV 816


>gi|357155349|ref|XP_003577091.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Brachypodium distachyon]
          Length = 877

 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 118/390 (30%), Positives = 201/390 (51%), Gaps = 4/390 (1%)

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           ++  ++ ++M   +S  ++++   M+  LC  G      +++      G  P+ V YN +
Sbjct: 241 DDARKLYDEMLAEESGADDYSTCVMVRGLCLEGLVEKGLKLIEARWGAGCVPNAVFYNVL 300

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G C+ G   R   LL E    G LP+  TY  L+  L  + DLEK   +L  M  ++ 
Sbjct: 301 IDGYCRRGDVGRGILLLGEMEAKGLLPTVVTYGTLMSWLGRKGDLEKIASLLSEMRERRL 360

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
               +I N  + ALC  ++ ++ L VL  M    C PD IT +T+I+G C+ GR++EA +
Sbjct: 361 PPNVQIYNSVIDALCKCRSASQALVVLKQMFAGGCDPDAITFSTLISGLCQEGRVQEAER 420

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +L +    +   P+  ++T++I G    G +  A NLL ++M +RG++P +VT+ A++ G
Sbjct: 421 LLRETTRWEL-NPNLSSYTSLIHGFCVRGEVIVASNLLVEMM-ERGHTPDVVTFGALIHG 478

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH- 419
           L    +V EA  V   M    ++ D+  Y ++I GLC+   L  A+   ++++   N+H 
Sbjct: 479 LVVAGQVSEALLVREKMAARQLLPDANIYNVLISGLCKKKMLPAARNLIEEML-EQNVHP 537

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           D YVY  +I G  R+  + EA      +   G+ P++V YN +I G C+  M  EA + +
Sbjct: 538 DKYVYTTLIDGFIRNESLDEARKIFEFMEQKGIHPDVVGYNAMIKGYCQFGMMNEAVECM 597

Query: 480 REMRKNGLNPDAVTWRILDKLHGNRGNDFG 509
             MRK G  PD  T+  L   +  +GN  G
Sbjct: 598 STMRKVGRIPDEFTYTTLIGGYAKQGNISG 627



 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 133/518 (25%), Positives = 243/518 (46%), Gaps = 26/518 (5%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C    VG    L  +M+++G +P VV+Y TL+    R G+++    +  EMR   +
Sbjct: 301 IDGYCRRGDVGRGILLLGEMEAKGLLPTVVTYGTLMSWLGRKGDLEKIASLLSEMRERRL 360

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN   Y+ ++  + + R   +A V++ +++    + + ++     F+ L+  LC+EG V
Sbjct: 361 PPNVQIYNSVIDALCKCRSASQALVVLKQMFAGGCDPDAIT-----FSTLISGLCQEGRV 415

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E  R+  +  + +      +   +I   C  G    AS ++  M +RG TP +V++ ++
Sbjct: 416 QEAERLLRETTRWELNPNLSSYTSLIHGFCVRGEVIVASNLLVEMMERGHTPDVVTFGAL 475

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +HGL   G    A  + E+      LP  + Y VL+ GLC +  L  AR +++ ML +  
Sbjct: 476 IHGLVVAGQVSEALLVREKMAARQLLPDANIYNVLISGLCKKKMLPAARNLIEEMLEQNV 535

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                +    +      ++  E   +  FM Q    PDV+  N +I G+C+ G + EA++
Sbjct: 536 HPDKYVYTTLIDGFIRNESLDEARKIFEFMEQKGIHPDVVGYNAMIKGYCQFGMMNEAVE 595

Query: 301 VLNDM-VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
            ++ M   G+   PD  T+TT+I G    G I  AL+LL  +M +R   P +V Y++++ 
Sbjct: 596 CMSTMRKVGRI--PDEFTYTTLIGGYAKQGNISGALSLLCDMMKRR-CQPNVVAYSSLIN 652

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
           G  +L   + A+ +F  M   G+  +  TY I+I  L + +++  A  +++ ++      
Sbjct: 653 GYCKLGDTDAAECLFGSMESQGLFPNVITYTILIGSLFKKDKVVRAAMYFEYMLLNQCSP 712

Query: 420 DNYVYAAMIKGLCRSGKIHEAVH---------------FLYELVDSGVTPNIVCYNVVID 464
           ++Y   +++ GLC S     + H                   LV+    P    YN +I 
Sbjct: 713 NDYTLHSLVTGLCNSMASIISSHCSSTVNLHGKGALLDIFRALVNDRCDPRNSAYNAIIF 772

Query: 465 GACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
             C  +M  EA  +  +M   G  PD+ T+  L  L+G
Sbjct: 773 SLCIHNMLGEALDLKNKMANKGYKPDSATF--LSLLYG 808



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 140/562 (24%), Positives = 239/562 (42%), Gaps = 94/562 (16%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC    V +  KL       G VPN V Y  LI GYCR G++     +  EM   G+LP 
Sbjct: 269 LCLEGLVEKGLKLIEARWGAGCVPNAVFYNVLIDGYCRRGDVGRGILLLGEMEAKGLLPT 328

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY  L+  + R  D+E+   L+ ++ ER      L  N   + +++D+LC+    ++ 
Sbjct: 329 VVTYGTLMSWLGRKGDLEKIASLLSEMRER-----RLPPNVQIYNSVIDALCKCRSASQA 383

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             + + M  G    +      +I  LC+ GR   A R++    +  L P+L SY S++HG
Sbjct: 384 LVVLKQMFAGGCDPDAITFSTLISGLCQEGRVQEAERLLRETTRWELNPNLSSYTSLIHG 443

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            C  G  + A  LL E ++ G+ P   T+  L+ GL     + +A  V + M +++ +  
Sbjct: 444 FCVRGEVIVASNLLVEMMERGHTPDVVTFGALIHGLVVAGQVSEALLVREKMAARQLLPD 503

Query: 244 TRICNIYLRALC---------------------------------LIKNPT--ELLNVLV 268
             I N+ +  LC                                  I+N +  E   +  
Sbjct: 504 ANIYNVLISGLCKKKMLPAARNLIEEMLEQNVHPDKYVYTTLIDGFIRNESLDEARKIFE 563

Query: 269 FMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM-VAGKFCAPDAVTFTTIIFGLLN 327
           FM Q    PDV+  N +I G+C+ G + EA++ ++ M   G+   PD  T+TT+I G   
Sbjct: 564 FMEQKGIHPDVVGYNAMIKGYCQFGMMNEAVECMSTMRKVGRI--PDEFTYTTLIGGYAK 621

Query: 328 VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADST 387
            G I  AL+LL  +M +R   P +V Y++++ G  +L   + A+ +F  M   G+  +  
Sbjct: 622 QGNISGALSLLCDMMKRR-CQPNVVAYSSLINGYCKLGDTDAAECLFGSMESQGLFPNVI 680

Query: 388 TYAIVIDGLCESNQLDEAKRFWDDIVW----PS--------------------------- 416
           TY I+I  L + +++  A  +++ ++     P+                           
Sbjct: 681 TYTILIGSLFKKDKVVRAAMYFEYMLLNQCSPNDYTLHSLVTGLCNSMASIISSHCSSTV 740

Query: 417 NIHD-------------------NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIV 457
           N+H                    N  Y A+I  LC    + EA+    ++ + G  P+  
Sbjct: 741 NLHGKGALLDIFRALVNDRCDPRNSAYNAIIFSLCIHNMLGEALDLKNKMANKGYKPDSA 800

Query: 458 CYNVVIDGACKLSMKREAYQIL 479
            +  ++ G C +   RE   IL
Sbjct: 801 TFLSLLYGFCSVGKSREWRTIL 822


>gi|218199706|gb|EEC82133.1| hypothetical protein OsI_26175 [Oryza sativa Indica Group]
          Length = 799

 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 139/503 (27%), Positives = 231/503 (45%), Gaps = 15/503 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC L  + EA +LF ++  +    N  SY  L+   C  G +  A+++FDEM      P+
Sbjct: 233 LCRLP-LDEAVQLFQELPEK----NTCSYNILLKALCTAGRIKDAHQLFDEM---ASPPD 284

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY ++V G     ++E A  L+ ++  R      L +N  A+ +++  LC EG V++ 
Sbjct: 285 VVTYGIMVHGYCTLSELETAIKLLSEMAAR-----GLELNPVAYTSVIALLCDEGQVSDA 339

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            R+ EDM     V +      ++   CR G    A      M+KRGL    V+Y ++++G
Sbjct: 340 VRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALING 399

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LC+ G    A ++L+E    G      TY VL++G C    + +A  V   M+ K+    
Sbjct: 400 LCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPN 459

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                     LC   +      +L  M     + ++ T N++ING CK G +E+A++ + 
Sbjct: 460 VVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMI 519

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           DM       PD  T+TTII  L     +  A +LL Q M  +G  P IVTYN ++ G   
Sbjct: 520 DMDEAGL-KPDVYTYTTIIGALCQSKELDRAHSLL-QEMLDKGIKPTIVTYNVLMNGFCM 577

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
             RVE  K +   ML   +  ++TTY  ++   C    +      +  ++    + +   
Sbjct: 578 SGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENT 637

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y  +IKG C++  + EA++F  E+++ G       YN +I    K     EA ++  +MR
Sbjct: 638 YNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRLFEKMR 697

Query: 484 KNGLNPDAVTWRILDKLHGNRGN 506
           K+ L  +   +     L  N  N
Sbjct: 698 KDRLTAEPDVYNFYIDLSFNEDN 720



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 102/410 (24%), Positives = 202/410 (49%), Gaps = 7/410 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   +V +A ++  DM   G V +   +TT++ G+CR G++  A   FDEM+  G+  +
Sbjct: 330 LCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAAD 389

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY+ L+ G+ R  +++ A  ++ ++     E++ L V+   +  L+D  C+ G + E 
Sbjct: 390 GVTYTALINGLCRAGELKEAERVLQEM-----EDKGLDVDAVTYTVLIDGYCKVGKMTEA 444

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           F +   M Q +          + D LC+ G    A+ +++ M  +GL  ++ +YNS+++G
Sbjct: 445 FLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLING 504

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LCK G   +A + + +  + G  P  +TY  ++  LC   +L++A  +LQ ML K     
Sbjct: 505 LCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPT 564

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               N+ +   C+         +L +ML+    P+  T N+++  +C    ++   ++  
Sbjct: 565 IVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYK 624

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            M++ +   P+  T+  +I G      ++EAL   +  M ++G+     +YNA++R L +
Sbjct: 625 GMLSQEV-VPNENTYNILIKGHCKARNMKEAL-YFHSEMIEKGFRLTASSYNALIRLLNK 682

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413
            ++  EA+ +F  M    + A+   Y   ID     + L+      D++V
Sbjct: 683 KKKFTEARRLFEKMRKDRLTAEPDVYNFYIDLSFNEDNLESTLALCDELV 732


>gi|359489321|ref|XP_002269223.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Vitis vinifera]
          Length = 889

 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 135/493 (27%), Positives = 240/493 (48%), Gaps = 8/493 (1%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C   R  +A   F  M  RG  P VV++ T+I+ +C+ G +  A K+FD ++  G  PN+
Sbjct: 312 CIRGRTSDALAWFNLMIERGCNPTVVTFNTVINAFCKEGNVVEARKLFDGLKEMGFSPNA 371

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           + Y+ L+ G ++ R++++AN+L    +E M+++  ++ +   F  LV    + G   +  
Sbjct: 372 IMYNTLMNGYVKMREIDQANML----YEEMRKK-GIAPDGITFNILVSGHYKYGREEDGD 426

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
           R+ +D+     + +       +  LC +GR   A   +  M ++GL+PS++++NS++   
Sbjct: 427 RLLKDISVLGLLPDRSLFDISVSGLCWAGRLDEAMEFLMDMLEKGLSPSIIAFNSVIAAY 486

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
            + G   +A++  +  + FG  PS  T   L+ GL     L++A +++  M+ K      
Sbjct: 487 SQAGLEDKAFEAYKLMVHFGLTPSPSTCSSLLMGLSINGRLQEATELIGQMIEKGLSVNN 546

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
               + L       +     ++   M +    PDV+  +  I+G  K G +EEA  V  +
Sbjct: 547 MAFTVLLDKFFKRGDVVGAQSLWGEMERRGIFPDVVAFSAFIDGLSKQGLVEEAYNVFLE 606

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
           M+  K   P+   + ++I G    G++ EAL L  +VM  RG  P I T N ++ GL + 
Sbjct: 607 MLR-KGLIPNNFAYNSLICGFCKCGKLNEALKL-EKVMRHRGLLPDIFTTNMIIGGLCKQ 664

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY 424
            R+  A  VF  M   G+  D  TY  +I+G C++  +  A    + +    +  D   Y
Sbjct: 665 GRMRSAINVFMDMHQTGLSPDIITYNTLINGYCKAFDMVNADNLVNRMYASGSNPDLTTY 724

Query: 425 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484
              I G C S +++ AV  L ELV +G+ PN V YN +++G C   + R A  +   + K
Sbjct: 725 NIRIHGFCSSRRMNRAVLMLDELVSAGIVPNTVTYNSMLNGVCSDILDR-AMILTARLLK 783

Query: 485 NGLNPDAVTWRIL 497
               P+ VT  +L
Sbjct: 784 MAFVPNVVTANLL 796



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 139/506 (27%), Positives = 236/506 (46%), Gaps = 18/506 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C    V EA KLF  +K  G  PN + Y TL++GY +  E+D A  +++EMR  G+
Sbjct: 343 INAFCKEGNVVEARKLFDGLKEMGFSPNAIMYNTLMNGYVKMREIDQANMLYEEMRKKGI 402

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSV-----NNAAFANLVDSLC 115
            P+ +T+++LV G  +    E  + L+          +D+SV     + + F   V  LC
Sbjct: 403 APDGITFNILVSGHYKYGREEDGDRLL----------KDISVLGLLPDRSLFDISVSGLC 452

Query: 116 REGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLV 175
             G ++E      DM +        A   +I +  ++G    A     +M   GLTPS  
Sbjct: 453 WAGRLDEAMEFLMDMLEKGLSPSIIAFNSVIAAYSQAGLEDKAFEAYKLMVHFGLTPSPS 512

Query: 176 SYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM 235
           + +S++ GL  +G    A +L+ + I+ G   +   + VL++      D+  A+ +   M
Sbjct: 513 TCSSLLMGLSINGRLQEATELIGQMIEKGLSVNNMAFTVLLDKFFKRGDVVGAQSLWGEM 572

Query: 236 LSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 295
             +         + ++  L       E  NV + ML+    P+    N++I GFCK G++
Sbjct: 573 ERRGIFPDVVAFSAFIDGLSKQGLVEEAYNVFLEMLRKGLIPNNFAYNSLICGFCKCGKL 632

Query: 296 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN 355
            EALK L  ++  +   PD  T   II GL   GR++ A+N ++  M Q G SP I+TYN
Sbjct: 633 NEALK-LEKVMRHRGLLPDIFTTNMIIGGLCKQGRMRSAIN-VFMDMHQTGLSPDIITYN 690

Query: 356 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP 415
            ++ G  +   +  A  + N M   G   D TTY I I G C S +++ A    D++V  
Sbjct: 691 TLINGYCKAFDMVNADNLVNRMYASGSNPDLTTYNIRIHGFCSSRRMNRAVLMLDELVSA 750

Query: 416 SNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREA 475
             + +   Y +M+ G+C S  +  A+     L+     PN+V  N+++    K  M    
Sbjct: 751 GIVPNTVTYNSMLNGVC-SDILDRAMILTARLLKMAFVPNVVTANLLLSQFYKQGMPERT 809

Query: 476 YQILREMRKNGLNPDAVTWRILDKLH 501
                ++ +     D +T++I+DK H
Sbjct: 810 LMWGHKLSEIPYAFDEITYKIMDKAH 835



 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 123/497 (24%), Positives = 230/497 (46%), Gaps = 19/497 (3%)

Query: 11  GEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVL 70
           G   KLF D+  RG  P   +++ +I G+CR G + +   +   M      PN+  Y+++
Sbjct: 248 GNVWKLFKDVIRRGPQPCKYTFSGIILGFCRKGCIHLGESLLHLMPKFHCEPNAFAYNIV 307

Query: 71  -----VRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFR 125
                +RG  RT D           W  +  E   +     F  ++++ C+EG V E  +
Sbjct: 308 INACCIRG--RTSDA--------LAWFNLMIERGCNPTVVTFNTVINAFCKEGNVVEARK 357

Query: 126 IAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLC 185
           + + + +            +++   +      A+ +   MRK+G+ P  +++N +V G  
Sbjct: 358 LFDGLKEMGFSPNAIMYNTLMNGYVKMREIDQANMLYEEMRKKGIAPDGITFNILVSGHY 417

Query: 186 KHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTR 245
           K+G      +LL++    G LP    + + V GLC    L++A + L  ML K       
Sbjct: 418 KYGREEDGDRLLKDISVLGLLPDRSLFDISVSGLCWAGRLDEAMEFLMDMLEKGLSPSII 477

Query: 246 ICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM 305
             N  + A        +       M+     P   T ++++ G    GR++EA +++  M
Sbjct: 478 AFNSVIAAYSQAGLEDKAFEAYKLMVHFGLTPSPSTCSSLLMGLSINGRLQEATELIGQM 537

Query: 306 VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLR 365
           +  K  + + + FT ++      G +  A + L+  M +RG  P +V ++A + GL +  
Sbjct: 538 IE-KGLSVNNMAFTVLLDKFFKRGDVVGAQS-LWGEMERRGIFPDVVAFSAFIDGLSKQG 595

Query: 366 RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYA 425
            VEEA  VF  ML  G++ ++  Y  +I G C+  +L+EA +    +     + D +   
Sbjct: 596 LVEEAYNVFLEMLRKGLIPNNFAYNSLICGFCKCGKLNEALKLEKVMRHRGLLPDIFTTN 655

Query: 426 AMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN 485
            +I GLC+ G++  A++   ++  +G++P+I+ YN +I+G CK      A  ++  M  +
Sbjct: 656 MIIGGLCKQGRMRSAINVFMDMHQTGLSPDIITYNTLINGYCKAFDMVNADNLVNRMYAS 715

Query: 486 GLNPDAVTWRILDKLHG 502
           G NPD  T+ I  ++HG
Sbjct: 716 GSNPDLTTYNI--RIHG 730



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 120/488 (24%), Positives = 223/488 (45%), Gaps = 48/488 (9%)

Query: 48  AYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKE--EEDLSVNNA 105
           A ++   MR  GV P++   ++L + +LR  D    NV     W+  K+           
Sbjct: 215 ALEILGRMREVGVRPSASGVAILFKLLLRVGDY--GNV-----WKLFKDVIRRGPQPCKY 267

Query: 106 AFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVM 165
            F+ ++   CR+G ++    +   MP+       FA   +I++ C  GR   A     +M
Sbjct: 268 TFSGIILGFCRKGCIHLGESLLHLMPKFHCEPNAFAYNIVINACCIRGRTSDALAWFNLM 327

Query: 166 RKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDL 225
            +RG  P++V++N++++  CK G  + A +L +   + G+ P+   Y  L+ G     ++
Sbjct: 328 IERGCNPTVVTFNTVINAFCKEGNVVEARKLFDGLKEMGFSPNAIMYNTLMNGYVKMREI 387

Query: 226 EKARKVLQFMLSK-----------------------------KDV-------DRTRICNI 249
           ++A  + + M  K                             KD+       DR+ + +I
Sbjct: 388 DQANMLYEEMRKKGIAPDGITFNILVSGHYKYGREEDGDRLLKDISVLGLLPDRS-LFDI 446

Query: 250 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK 309
            +  LC      E +  L+ ML+    P +I  N+VI  + + G  ++A +    MV   
Sbjct: 447 SVSGLCWAGRLDEAMEFLMDMLEKGLSPSIIAFNSVIAAYSQAGLEDKAFEAYKLMVHFG 506

Query: 310 FCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEE 369
              P   T ++++ GL   GR+QEA  L+ Q M ++G S   + +  +L   F+   V  
Sbjct: 507 L-TPSPSTCSSLLMGLSINGRLQEATELIGQ-MIEKGLSVNNMAFTVLLDKFFKRGDVVG 564

Query: 370 AKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIK 429
           A+ ++  M   G+  D   ++  IDGL +   ++EA   + +++    I +N+ Y ++I 
Sbjct: 565 AQSLWGEMERRGIFPDVVAFSAFIDGLSKQGLVEEAYNVFLEMLRKGLIPNNFAYNSLIC 624

Query: 430 GLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNP 489
           G C+ GK++EA+     +   G+ P+I   N++I G CK    R A  +  +M + GL+P
Sbjct: 625 GFCKCGKLNEALKLEKVMRHRGLLPDIFTTNMIIGGLCKQGRMRSAINVFMDMHQTGLSP 684

Query: 490 DAVTWRIL 497
           D +T+  L
Sbjct: 685 DIITYNTL 692



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 103/393 (26%), Positives = 194/393 (49%), Gaps = 18/393 (4%)

Query: 126 IAEDMPQGKSVNE-EFACGHMIDSLCRSGRN----HGASRVVYVMRKRGLTPSLVSYNSI 180
           + E M +G  V E +F+   ++DSL R+  N      A  ++  MR+ G+ PS      +
Sbjct: 181 LVEFMWRGHHVYESDFS---VLDSLMRAFVNAEMGFQALEILGRMREVGVRPSASGVAIL 237

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
              L + G     ++L ++ I+ G  P ++T+  ++ G C +  +     +L  M     
Sbjct: 238 FKLLLRVGDYGNVWKLFKDVIRRGPQPCKYTFSGIILGFCRKGCIHLGESLLHLMPKFHC 297

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                  NI + A C+    ++ L     M++  C P V+T NTVIN FCK G + EA K
Sbjct: 298 EPNAFAYNIVINACCIRGRTSDALAWFNLMIERGCNPTVVTFNTVINAFCKEGNVVEARK 357

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           + + +    F +P+A+ + T++ G + +  I +A N+LY+ M ++G +P  +T+N ++ G
Sbjct: 358 LFDGLKEMGF-SPNAIMYNTLMNGYVKMREIDQA-NMLYEEMRKKGIAPDGITFNILVSG 415

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV----WPS 416
            ++  R E+   +   +  +G++ D + + I + GLC + +LDEA  F  D++     PS
Sbjct: 416 HYKYGREEDGDRLLKDISVLGLLPDRSLFDISVSGLCWAGRLDEAMEFLMDMLEKGLSPS 475

Query: 417 NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAY 476
            I  N V AA      ++G   +A      +V  G+TP+    + ++ G       +EA 
Sbjct: 476 IIAFNSVIAA----YSQAGLEDKAFEAYKLMVHFGLTPSPSTCSSLLMGLSINGRLQEAT 531

Query: 477 QILREMRKNGLNPDAVTWRILDKLHGNRGNDFG 509
           +++ +M + GL+ + + + +L      RG+  G
Sbjct: 532 ELIGQMIEKGLSVNNMAFTVLLDKFFKRGDVVG 564


>gi|356532720|ref|XP_003534919.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g22470, mitochondrial-like [Glycine max]
          Length = 468

 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 125/471 (26%), Positives = 227/471 (48%), Gaps = 50/471 (10%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M  +G   N+V+ + LI+ +C  G+M  ++ +  ++   G  PN++T++ L++G+    +
Sbjct: 36  MDVKGIEQNLVTLSILINCFCHLGQMAFSFSLLGKILKLGYXPNTITWTTLMKGLCLKGE 95

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVN---EVFRIAEDMPQGKSV 136
           V++    +    +++  +     N  ++  L++ LC+ G      ++ R+ ED     +V
Sbjct: 96  VKK----LLHFHDKVVAQA-FQTNQVSYGTLLNGLCKTGETRCAIKLLRMIEDRSTRPNV 150

Query: 137 NEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQL 196
               A   +ID LC+    + A  +   M  R + P++++YN+++   C  G  M A+ L
Sbjct: 151 VMYSA---IIDGLCKDKLVNEAYDLYSEMDAREIFPNVITYNTLICAFCLAGQLMGAFSL 207

Query: 197 LEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCL 256
           L E I     P  +T+ +L++ LC E                                  
Sbjct: 208 LHEMILKNINPDVYTFSILIDALCKEG--------------------------------- 234

Query: 257 IKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAV 316
            KN  ++ + +V   Q    P+V + N +ING CK  R++EA+ +L +M+  K   PD V
Sbjct: 235 -KNAKQIFHAMV---QMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLH-KNMVPDTV 289

Query: 317 TFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNC 376
           T+ ++I GL   GRI  ALNL+ + M  RG    +VTY ++L  L + + +++A  +F  
Sbjct: 290 TYNSLIDGLCKSGRITSALNLMNE-MHHRGQPADVVTYTSLLDALCKNQNLDKATALFMK 348

Query: 377 MLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGK 436
           M   G+     TY  +IDGLC+  +L  A+  +  ++      D + Y  MI GLC+ G 
Sbjct: 349 MKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCCIDVWTYTVMISGLCKEGM 408

Query: 437 IHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
             EA+    ++ D+G  PN V + ++I    +     +A ++L EM   GL
Sbjct: 409 FDEALAIKSKMEDNGCIPNAVTFEIIIRSLFEKDENDKAEKLLHEMIAKGL 459



 Score =  168 bits (425), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 112/449 (24%), Positives = 209/449 (46%), Gaps = 44/449 (9%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C L ++  +  L   +   G+ PN +++TTL+ G C  GE+       D++       N
Sbjct: 55  FCHLGQMAFSFSLLGKILKLGYXPNTITWTTLMKGLCLKGEVKKLLHFHDKVVAQAFQTN 114

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            ++Y  L+ G+ +T +   A  L+     RM E+     N   ++ ++D LC++  VNE 
Sbjct: 115 QVSYGTLLNGLCKTGETRCAIKLL-----RMIEDRSTRPNVVMYSAIIDGLCKDKLVNEA 169

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           + +  +M   +          +I + C +G+  GA  +++ M  + + P + +++ ++  
Sbjct: 170 YDLYSEMDAREIFPNVITYNTLICAFCLAGQLMGAFSLLHEMILKNINPDVYTFSILIDA 229

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LCK G    A Q+    +Q G  P+ ++Y +++ GLC    +++A  +L+ ML K  V  
Sbjct: 230 LCKEGK--NAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMV-- 285

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                                            PD +T N++I+G CK GRI  AL ++N
Sbjct: 286 ---------------------------------PDTVTYNSLIDGLCKSGRITSALNLMN 312

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           +M   +    D VT+T+++  L     + +A   L+  M +RG  P + TY A++ GL +
Sbjct: 313 EM-HHRGQPADVVTYTSLLDALCKNQNLDKA-TALFMKMKERGIQPTMYTYTALIDGLCK 370

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
             R++ A+E+F  +L  G   D  TY ++I GLC+    DEA      +     I +   
Sbjct: 371 GGRLKNAQELFQHLLVKGCCIDVWTYTVMISGLCKEGMFDEALAIKSKMEDNGCIPNAVT 430

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGV 452
           +  +I+ L    +  +A   L+E++  G+
Sbjct: 431 FEIIIRSLFEKDENDKAEKLLHEMIAKGL 459



 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 107/426 (25%), Positives = 193/426 (45%), Gaps = 39/426 (9%)

Query: 107 FANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMR 166
           F  ++ SL +  Y   V  +++ M              +I+  C  G+   +  ++  + 
Sbjct: 13  FNKILGSLVKLKYYLTVISLSKQMDVKGIEQNLVTLSILINCFCHLGQMAFSFSLLGKIL 72

Query: 167 KRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLE 226
           K G  P+ +++ +++ GLC  G   +     ++ +   +  ++ +Y  L+ GLC   +  
Sbjct: 73  KLGYXPNTITWTTLMKGLCLKGEVKKLLHFHDKVVAQAFQTNQVSYGTLLNGLCKTGETR 132

Query: 227 KARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVI 286
            A K+L+ +  +       + +  +  LC  K   E  ++   M   +  P+VIT NT+I
Sbjct: 133 CAIKLLRMIEDRSTRPNVVMYSAIIDGLCKDKLVNEAYDLYSEMDAREIFPNVITYNTLI 192

Query: 287 NGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
             FC  G++  A  +L++M+  K   PD  TF+ +I  L   G+  + +   +  M Q G
Sbjct: 193 CAFCLAGQLMGAFSLLHEMIL-KNINPDVYTFSILIDALCKEGKNAKQI---FHAMVQMG 248

Query: 347 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
            +P + +YN ++ GL + +RV+EA  +   ML   +V D+ TY  +IDGLC+S ++  A 
Sbjct: 249 VNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSAL 308

Query: 407 RFWD---------DIVWPSNIHDN--------------------------YVYAAMIKGL 431
              +         D+V  +++ D                           Y Y A+I GL
Sbjct: 309 NLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGL 368

Query: 432 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 491
           C+ G++  A      L+  G   ++  Y V+I G CK  M  EA  I  +M  NG  P+A
Sbjct: 369 CKGGRLKNAQELFQHLLVKGCCIDVWTYTVMISGLCKEGMFDEALAIKSKMEDNGCIPNA 428

Query: 492 VTWRIL 497
           VT+ I+
Sbjct: 429 VTFEII 434



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 92/348 (26%), Positives = 158/348 (45%), Gaps = 51/348 (14%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    V EA+ L+ +M +R   PNV++Y TLI  +C  G++  A+ +  EM    +
Sbjct: 157 IDGLCKDKLVNEAYDLYSEMDAREIFPNVITYNTLICAFCLAGQLMGAFSLLHEMILKNI 216

Query: 61  LPNSLTYSVLVRGVLR----TRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCR 116
            P+  T+S+L+  + +     + +  A V M            ++ N  ++  +++ LC+
Sbjct: 217 NPDVYTFSILIDALCKEGKNAKQIFHAMVQM-----------GVNPNVYSYNIMINGLCK 265

Query: 117 EGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVS 176
              V+E   +  +M     V +      +ID LC+SGR   A  ++  M  RG    +V+
Sbjct: 266 CKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVT 325

Query: 177 YNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFML 236
           Y S++  LCK+    +A  L  +  + G  P+ +TY  L++GLC    L+ A+++ Q +L
Sbjct: 326 YTSLLDALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLL 385

Query: 237 SKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIE 296
            K                                    C  DV T   +I+G CK G  +
Sbjct: 386 VKG-----------------------------------CCIDVWTYTVMISGLCKEGMFD 410

Query: 297 EALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ 344
           EAL + + M     C P+AVTF  II  L       +A  LL++++ +
Sbjct: 411 EALAIKSKM-EDNGCIPNAVTFEIIIRSLFEKDENDKAEKLLHEMIAK 457



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 97/206 (47%), Gaps = 5/206 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   RV EA  L  +M  +  VP+ V+Y +LI G C++G +  A  + +EM H G 
Sbjct: 260 INGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQ 319

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             + +TY+ L+  + + +++++A  L  K+ ER      +      +  L+D LC+ G +
Sbjct: 320 PADVVTYTSLLDALCKNQNLDKATALFMKMKER-----GIQPTMYTYTALIDGLCKGGRL 374

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                + + +       + +    MI  LC+ G    A  +   M   G  P+ V++  I
Sbjct: 375 KNAQELFQHLLVKGCCIDVWTYTVMISGLCKEGMFDEALAIKSKMEDNGCIPNAVTFEII 434

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYL 206
           +  L +     +A +LL E I  G L
Sbjct: 435 IRSLFEKDENDKAEKLLHEMIAKGLL 460


>gi|357442837|ref|XP_003591696.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480744|gb|AES61947.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 543

 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 132/493 (26%), Positives = 235/493 (47%), Gaps = 34/493 (6%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +  L  L        LF+ ++  G  PN+VS + LI+ YC  G+M  A+ +F ++   G 
Sbjct: 78  LSSLVKLKHYPTVISLFYQLEFNGIKPNIVSLSILINCYCHLGQMRFAFSIFAKILKMGY 137

Query: 61  LPNSLTYSVLVRGVLRTRDVERA-----NVLMFKLWERMKEEEDLSVNNAAFANLVDSLC 115
            PN++T + LV+G      V+ A     +VL                N  ++  L++ LC
Sbjct: 138 HPNTITLTTLVKGFCLNHKVKEALHFHDHVLAL----------GFHFNQVSYGTLINGLC 187

Query: 116 REGYVNEVFRIAEDMPQGKSVNEEFAC-GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSL 174
           + G      ++   + +GK V+ +      +ID LC+    + A  +   M  + ++P++
Sbjct: 188 KIGETRAALQMLRQI-EGKLVSTDVVMYSTIIDGLCKDKLVNDAYELYSEMITKRISPTV 246

Query: 175 VSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQF 234
           V+ NS+++G C  G    A+ LL E +     P  +T+ +LV+ LC E  +++A+  +  
Sbjct: 247 VTLNSLIYGYCIVGQFKEAFGLLREMVLKNINPDVYTFNILVDALCKEGKIKEAKSGIAV 306

Query: 235 MLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGR 294
           M+ +  +      +  +   CL+    +  +V                + VINGFCK+  
Sbjct: 307 MMKEGVMPDVVTYSSLMDGYCLVNEVNKAKHV---------------YSIVINGFCKIKM 351

Query: 295 IEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTY 354
           +++AL +  +M   +  APD VT+ ++I GL   GRI  A  L+ + M   G    I+TY
Sbjct: 352 VDKALSLFYEMRCRRI-APDTVTYNSLIDGLCKSGRISYAWELVDE-MRDSGQPADIITY 409

Query: 355 NAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVW 414
           N+++  L +   V++A  +   +   G+  D  TY I+IDGLC+  +L +A+  + D++ 
Sbjct: 410 NSLIDALCKNHHVDKAIALVKKIKDQGIQLDMYTYNILIDGLCKQGRLKDAQVIFQDLLI 469

Query: 415 PSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKRE 474
                  + Y  MI GLC  G ++EA   L ++ D+G  P+ V    +I    +      
Sbjct: 470 KGYNLTVWTYTIMINGLCLEGLLNEAETLLSKMEDNGCVPDAVTCETIIRALFENDKNER 529

Query: 475 AYQILREMRKNGL 487
           A ++LREM   GL
Sbjct: 530 AEKLLREMIARGL 542



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 93/373 (24%), Positives = 179/373 (47%), Gaps = 22/373 (5%)

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
           +I+  C  G+   A  +   + K G  P+ ++  ++V G C +     A    +  +  G
Sbjct: 112 LINCYCHLGQMRFAFSIFAKILKMGYHPNTITLTTLVKGFCLNHKVKEALHFHDHVLALG 171

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL 264
           +  ++ +Y  L+ GLC   +   A ++L+ +  K       + +  +  LC  K   +  
Sbjct: 172 FHFNQVSYGTLINGLCKIGETRAALQMLRQIEGKLVSTDVVMYSTIIDGLCKDKLVNDAY 231

Query: 265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 324
            +   M+  +  P V+TLN++I G+C +G+ +EA  +L +MV  K   PD  TF  ++  
Sbjct: 232 ELYSEMITKRISPTVVTLNSLIYGYCIVGQFKEAFGLLREMVL-KNINPDVYTFNILVDA 290

Query: 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA--------------------VLRGLFRL 364
           L   G+I+EA + +  VM + G  P +VTY++                    V+ G  ++
Sbjct: 291 LCKEGKIKEAKSGI-AVMMKEGVMPDVVTYSSLMDGYCLVNEVNKAKHVYSIVINGFCKI 349

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY 424
           + V++A  +F  M    +  D+ TY  +IDGLC+S ++  A    D++       D   Y
Sbjct: 350 KMVDKALSLFYEMRCRRIAPDTVTYNSLIDGLCKSGRISYAWELVDEMRDSGQPADIITY 409

Query: 425 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484
            ++I  LC++  + +A+  + ++ D G+  ++  YN++IDG CK    ++A  I +++  
Sbjct: 410 NSLIDALCKNHHVDKAIALVKKIKDQGIQLDMYTYNILIDGLCKQGRLKDAQVIFQDLLI 469

Query: 485 NGLNPDAVTWRIL 497
            G N    T+ I+
Sbjct: 470 KGYNLTVWTYTIM 482



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 92/186 (49%), Gaps = 1/186 (0%)

Query: 312 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK 371
           AP  + F  I+  L+ +      ++L YQ +   G  P IV+ + ++     L ++  A 
Sbjct: 68  APSVIEFGKILSSLVKLKHYPTVISLFYQ-LEFNGIKPNIVSLSILINCYCHLGQMRFAF 126

Query: 372 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 431
            +F  +L +G   ++ T   ++ G C ++++ EA  F D ++      +   Y  +I GL
Sbjct: 127 SIFAKILKMGYHPNTITLTTLVKGFCLNHKVKEALHFHDHVLALGFHFNQVSYGTLINGL 186

Query: 432 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 491
           C+ G+   A+  L ++    V+ ++V Y+ +IDG CK  +  +AY++  EM    ++P  
Sbjct: 187 CKIGETRAALQMLRQIEGKLVSTDVVMYSTIIDGLCKDKLVNDAYELYSEMITKRISPTV 246

Query: 492 VTWRIL 497
           VT   L
Sbjct: 247 VTLNSL 252



 Score = 42.4 bits (98), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 38/76 (50%)

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           +  ++  L +       +   Y+L  +G+ PNIV  +++I+  C L   R A+ I  ++ 
Sbjct: 74  FGKILSSLVKLKHYPTVISLFYQLEFNGIKPNIVSLSILINCYCHLGQMRFAFSIFAKIL 133

Query: 484 KNGLNPDAVTWRILDK 499
           K G +P+ +T   L K
Sbjct: 134 KMGYHPNTITLTTLVK 149


>gi|242069919|ref|XP_002450236.1| hypothetical protein SORBIDRAFT_05g002360 [Sorghum bicolor]
 gi|241936079|gb|EES09224.1| hypothetical protein SORBIDRAFT_05g002360 [Sorghum bicolor]
          Length = 833

 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 146/563 (25%), Positives = 258/563 (45%), Gaps = 79/563 (14%)

Query: 4   LCGLSRVGEAHK-LFFDMKSRGHVPNVVSYTTLIHGYC---------------------- 40
           LC   R+ EA   L + M   G  PNVVSY TL+ G+C                      
Sbjct: 240 LCDAKRLDEATNILLWRMPEFGCTPNVVSYNTLVKGFCNENRAEEALELLHVMADDQGLS 299

Query: 41  ----------------RTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERAN 84
                           R G++D AY +F +M   G+ P+ +TY+ ++ G+ + + V+RA 
Sbjct: 300 CPPDVVSYNTVINGFFREGQVDKAYNLFLQMIDRGIPPDVVTYNTVIDGLCKAQVVDRAK 359

Query: 85  VLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGH 144
            +  ++ ++      +  +N  +  L+      G   EV R+ E+M       + F    
Sbjct: 360 AVFQQMLDK-----GVKPSNGTYNCLIHGYLSTGKWKEVVRLLEEMSTHDLEPDCFIYAL 414

Query: 145 MIDSLCRSGRNHGASRVVYV---------------------MRKRGLTPSLVSYNSIVHG 183
           ++D LC++GR   A  +                        MR++GL+P++V+Y +++  
Sbjct: 415 LLDYLCKNGRCTEARNIFDSVIRKGIKPDAMIDEAVCIFDKMRQQGLSPNVVNYGALIDA 474

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LCK G      ++ +  ++F  + +E      V GLC     EKA +++  ML +     
Sbjct: 475 LCKLG------RVDDAILKFNQMINE------VYGLCTVEKWEKAEELVFEMLDQGIRLD 522

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
             + N  +  LC      E   ++  ML+   +PDVI+ NT+++G C  GR +EA K+L+
Sbjct: 523 VVVFNTLMCDLCREGRVMEAQRLIELMLRVGVRPDVISYNTLVDGHCLTGRTDEAAKLLD 582

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            MV+     P+  T+ T++ G     RI +A +LL +++   G +P +VTYN +L GLF+
Sbjct: 583 VMVSIGL-KPNEFTYNTLLHGYCKARRIDDAYSLLREML-MNGPTPDVVTYNTILHGLFQ 640

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
             R  EAKE++  M+      D  TY I+++GLC++N +DEA + +  +           
Sbjct: 641 TGRFSEAKELYLNMINSRTQWDMYTYNIILNGLCKNNCVDEAFKMFQSLCSKGLQLHIIT 700

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           +  MI  L + GK  +A+     +   G+ P++  Y ++ +   K     E   +   M 
Sbjct: 701 FNIMIGALLKGGKKEDAMDLFATISAYGLVPDVETYCLIAENLIKEGSLEELGVLFSAME 760

Query: 484 KNGLNPDAVTWRILDKLHGNRGN 506
           +NG  P++     L +   +RG+
Sbjct: 761 ENGTAPNSRMLNALVRRFLHRGD 783



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 89/330 (26%), Positives = 152/330 (46%), Gaps = 51/330 (15%)

Query: 170 LTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKAR 229
           + P   +Y+ ++   C+ G     + +    ++ G+  +   +  L++GLC    L++A 
Sbjct: 191 VAPDRCTYSILIGCFCRMGRLEHGFAVFGLILKTGWRVNHIVFNQLLKGLCDAKRLDEAT 250

Query: 230 KVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGF 289
            +L                                  L  M +  C P+V++ NT++ GF
Sbjct: 251 NIL----------------------------------LWRMPEFGCTPNVVSYNTLVKGF 276

Query: 290 CKMGRIEEALKVLNDMV--AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGY 347
           C   R EEAL++L+ M    G  C PD V++ T+I G    G++ +A NL  Q M  RG 
Sbjct: 277 CNENRAEEALELLHVMADDQGLSCPPDVVSYNTVINGFFREGQVDKAYNLFLQ-MIDRGI 335

Query: 348 SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKR 407
            P +VTYN V+ GL + + V+ AK VF  ML  GV   + TY  +I G   + +  E  R
Sbjct: 336 PPDVVTYNTVIDGLCKAQVVDRAKAVFQQMLDKGVKPSNGTYNCLIHGYLSTGKWKEVVR 395

Query: 408 FWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGAC 467
             +++       D ++YA ++  LC++G+  EA +    ++  G+ P+            
Sbjct: 396 LLEEMSTHDLEPDCFIYALLLDYLCKNGRCTEARNIFDSVIRKGIKPD------------ 443

Query: 468 KLSMKREAYQILREMRKNGLNPDAVTWRIL 497
             +M  EA  I  +MR+ GL+P+ V +  L
Sbjct: 444 --AMIDEAVCIFDKMRQQGLSPNVVNYGAL 471



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 116/252 (46%), Gaps = 5/252 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M  LC   RV EA +L   M   G  P+V+SY TL+ G+C TG  D A K+ D M   G+
Sbjct: 530 MCDLCREGRVMEAQRLIELMLRVGVRPDVISYNTLVDGHCLTGRTDEAAKLLDVMVSIGL 589

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN  TY+ L+ G  + R ++ A  L+ ++       + ++ N      ++  L + G  
Sbjct: 590 KPNEFTYNTLLHGYCKARRIDDAYSLLREMLMNGPTPDVVTYNT-----ILHGLFQTGRF 644

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E   +  +M   ++  + +    +++ LC++     A ++   +  +GL   ++++N +
Sbjct: 645 SEAKELYLNMINSRTQWDMYTYNIILNGLCKNNCVDEAFKMFQSLCSKGLQLHIITFNIM 704

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +  L K G    A  L      +G +P   TY ++ E L  E  LE+   +   M     
Sbjct: 705 IGALLKGGKKEDAMDLFATISAYGLVPDVETYCLIAENLIKEGSLEELGVLFSAMEENGT 764

Query: 241 VDRTRICNIYLR 252
              +R+ N  +R
Sbjct: 765 APNSRMLNALVR 776



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 96/228 (42%), Gaps = 5/228 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C   R  EA KL   M S G  PN  +Y TL+HGYC+   +D AY +  EM   G 
Sbjct: 565 VDGHCLTGRTDEAAKLLDVMVSIGLKPNEFTYNTLLHGYCKARRIDDAYSLLREMLMNGP 624

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TY+ ++ G+ +T     A  L   +    + + D+   N     +++ LC+   V
Sbjct: 625 TPDVVTYNTILHGLFQTGRFSEAKELYLNMINS-RTQWDMYTYNI----ILNGLCKNNCV 679

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E F++ + +              MI +L + G+   A  +   +   GL P + +Y  I
Sbjct: 680 DEAFKMFQSLCSKGLQLHIITFNIMIGALLKGGKKEDAMDLFATISAYGLVPDVETYCLI 739

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKA 228
              L K G       L     + G  P+      LV       D+ +A
Sbjct: 740 AENLIKEGSLEELGVLFSAMEENGTAPNSRMLNALVRRFLHRGDISRA 787



 Score = 46.6 bits (109), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 9/121 (7%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           +A  LF  + + G VP+V +Y  +     + G ++    +F  M   G  PNS   + LV
Sbjct: 716 DAMDLFATISAYGLVPDVETYCLIAENLIKEGSLEELGVLFSAMEENGTAPNSRMLNALV 775

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP 131
           R  L   D+ RA   + KL     +E++ S+  A+ A+++ SL   G   E  ++A+ +P
Sbjct: 776 RRFLHRGDISRAGAYLSKL-----DEKNFSL-EASTASMLISLYSRG---EYQQLAKSLP 826

Query: 132 Q 132
           +
Sbjct: 827 E 827


>gi|359481971|ref|XP_003632699.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Vitis vinifera]
          Length = 819

 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 126/505 (24%), Positives = 236/505 (46%), Gaps = 7/505 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ L    R  +  +LF ++   G  P+   Y   I    + G++  A ++   M+  GV
Sbjct: 154 LESLVSTKRYEDTLQLFSEIVESGLRPDQFMYGKAIQAAVKLGDLKRAIELMTCMKRGGV 213

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P    Y+V++ G+ + + ++ A  L  ++ +R      ++ N   +  L+D  C+ G +
Sbjct: 214 SPGVFVYNVVIGGLCKEKRMKDAEKLFDEMLDR-----RVAPNRITYNTLIDGYCKVGQL 268

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E F I E M              +++ LCR+     A RV+  M   G  P   +Y ++
Sbjct: 269 EEAFNIRERMKVENVEPTIITFNSLLNGLCRAQMMEEAQRVLEEMEVYGFVPDRFTYTTL 328

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
             G  K G    +  L EE ++ G    ++T  +L+  LC E ++EKA +VL+  L    
Sbjct: 329 FDGHLKCGNVDASITLSEEAVRKGVQILDYTCSILLNALCKEGNMEKAEEVLKKFLENGL 388

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                  N  +   C + +  +    +  M     +P+ +T N+++  FC+M  +EEA K
Sbjct: 389 APVGVFFNTIVNGYCQVGDINKAYTTIEKMEAVGLRPNHVTYNSLVKKFCEMKNMEEAEK 448

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
            +  MV  K   P+  T+ T+I G            +L + M ++G  P +++Y  ++  
Sbjct: 449 CIKKMVE-KGVLPNVETYNTLIDGYGRSCLFDRCFQILEE-MEKKGLKPNVISYGCLINC 506

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L +   + EA+ +   M+  GVV ++  Y ++IDG C + +L +A RF+D++V    +  
Sbjct: 507 LCKDANILEAEVILGDMVHRGVVPNAQIYNMLIDGSCIAGKLKDAFRFFDEMVAREIVPT 566

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              Y  +I GLC+ GK+ EA +   E+   G++ +++ YN +I G       ++A ++  
Sbjct: 567 LVTYNILINGLCKKGKVMEAENLASEITRKGLSFDVITYNSLISGYSSAGNVQKALELYE 626

Query: 481 EMRKNGLNPDAVTWRILDKLHGNRG 505
            M+K+G+ P   T+  L    G  G
Sbjct: 627 TMKKSGIKPTLNTYHRLIAGCGKEG 651



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 130/512 (25%), Positives = 246/512 (48%), Gaps = 24/512 (4%)

Query: 4   LCGLSR-VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           +C  S+ V E+ +L+  MK  G +P+V S    +     T   +   ++F E+   G+ P
Sbjct: 121 ICSESKMVSESAELYMLMKKDGVLPSVASLNLFLESLVSTKRYEDTLQLFSEIVESGLRP 180

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           +   Y   ++  ++  D++RA  LM  +     +   +S     +  ++  LC+E  + +
Sbjct: 181 DQFMYGKAIQAAVKLGDLKRAIELMTCM-----KRGGVSPGVFVYNVVIGGLCKEKRMKD 235

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
             ++ ++M   +          +ID  C+ G+   A  +   M+   + P+++++NS+++
Sbjct: 236 AEKLFDEMLDRRVAPNRITYNTLIDGYCKVGQLEEAFNIRERMKVENVEPTIITFNSLLN 295

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEG--LCGESDL------EKARKVLQF 234
           GLC+      A ++LEE   +G++P   TY  L +G   CG  D       E  RK +Q 
Sbjct: 296 GLCRAQMMEEAQRVLEEMEVYGFVPDRFTYTTLFDGHLKCGNVDASITLSEEAVRKGVQI 355

Query: 235 MLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGR 294
           +      D T  C+I L ALC   N  +   VL   L+    P  +  NT++NG+C++G 
Sbjct: 356 L------DYT--CSILLNALCKEGNMEKAEEVLKKFLENGLAPVGVFFNTIVNGYCQVGD 407

Query: 295 IEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTY 354
           I +A   +  M A     P+ VT+ +++     +  ++EA   + + M ++G  P + TY
Sbjct: 408 INKAYTTIEKMEAVGL-RPNHVTYNSLVKKFCEMKNMEEAEKCIKK-MVEKGVLPNVETY 465

Query: 355 NAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVW 414
           N ++ G  R    +   ++   M   G+  +  +Y  +I+ LC+   + EA+    D+V 
Sbjct: 466 NTLIDGYGRSCLFDRCFQILEEMEKKGLKPNVISYGCLINCLCKDANILEAEVILGDMVH 525

Query: 415 PSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKRE 474
              + +  +Y  +I G C +GK+ +A  F  E+V   + P +V YN++I+G CK     E
Sbjct: 526 RGVVPNAQIYNMLIDGSCIAGKLKDAFRFFDEMVAREIVPTLVTYNILINGLCKKGKVME 585

Query: 475 AYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           A  +  E+ + GL+ D +T+  L   + + GN
Sbjct: 586 AENLASEITRKGLSFDVITYNSLISGYSSAGN 617



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 133/506 (26%), Positives = 238/506 (47%), Gaps = 16/506 (3%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R+ +A KLF +M  R   PN ++Y TLI GYC+ G+++ A+ + + M+   V P 
Sbjct: 227 LCKEKRMKDAEKLFDEMLDRRVAPNRITYNTLIDGYCKVGQLEEAFNIRERMKVENVEPT 286

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +T++ L+ G+ R + +E A     ++ E M E      +   +  L D   + G V+  
Sbjct: 287 IITFNSLLNGLCRAQMMEEAQ----RVLEEM-EVYGFVPDRFTYTTLFDGHLKCGNVDAS 341

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             ++E+  +      ++ C  ++++LC+ G    A  V+    + GL P  V +N+IV+G
Sbjct: 342 ITLSEEAVRKGVQILDYTCSILLNALCKEGNMEKAEEVLKKFLENGLAPVGVFFNTIVNG 401

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            C+ G   +AY  +E+    G  P+  TY  LV+  C   ++E+A K ++ M+ K  +  
Sbjct: 402 YCQVGDINKAYTTIEKMEAVGLRPNHVTYNSLVKKFCEMKNMEEAEKCIKKMVEKGVLPN 461

Query: 244 TRICNIYLRAL---CLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
               N  +      CL         +L  M +   +P+VI+   +IN  CK   I EA  
Sbjct: 462 VETYNTLIDGYGRSCLFDR---CFQILEEMEKKGLKPNVISYGCLINCLCKDANILEAEV 518

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +L DMV  +   P+A  +  +I G    G++++A    +  M  R   P +VTYN ++ G
Sbjct: 519 ILGDMVH-RGVVPNAQIYNMLIDGSCIAGKLKDAFRF-FDEMVAREIVPTLVTYNILING 576

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L +  +V EA+ + + +   G+  D  TY  +I G   +  + +A   ++ +        
Sbjct: 577 LCKKGKVMEAENLASEITRKGLSFDVITYNSLISGYSSAGNVQKALELYETMKKSGIKPT 636

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLY-ELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
              Y  +I G  + G +   V  +Y E++   + P+ V YN +I    +    ++A  + 
Sbjct: 637 LNTYHRLIAGCGKEGLV--LVEKIYQEMLQMNLVPDRVIYNALIHCYVEHGDVQKACSLH 694

Query: 480 REMRKNGLNPDAVTWRILDKLHGNRG 505
             M   G+ PD +T+  L   H   G
Sbjct: 695 SAMEAQGIQPDKMTYNCLILGHFKEG 720



 Score =  171 bits (433), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 119/489 (24%), Positives = 233/489 (47%), Gaps = 8/489 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC    + EA ++  +M+  G VP+  +YTTL  G+ + G +D +  + +E    GV
Sbjct: 294 LNGLCRAQMMEEAQRVLEEMEVYGFVPDRFTYTTLFDGHLKCGNVDASITLSEEAVRKGV 353

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
                T S+L+  + +  ++E+A  ++ K  E       L+     F  +V+  C+ G +
Sbjct: 354 QILDYTCSILLNALCKEGNMEKAEEVLKKFLEN-----GLAPVGVFFNTIVNGYCQVGDI 408

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           N+ +   E M              ++   C       A + +  M ++G+ P++ +YN++
Sbjct: 409 NKAYTTIEKMEAVGLRPNHVTYNSLVKKFCEMKNMEEAEKCIKKMVEKGVLPNVETYNTL 468

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G  +     R +Q+LEE  + G  P+  +Y  L+  LC ++++ +A  +L  M+ +  
Sbjct: 469 IDGYGRSCLFDRCFQILEEMEKKGLKPNVISYGCLINCLCKDANILEAEVILGDMVHRGV 528

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           V   +I N+ +   C+     +       M+  +  P ++T N +ING CK G++ EA  
Sbjct: 529 VPNAQIYNMLIDGSCIAGKLKDAFRFFDEMVAREIVPTLVTYNILINGLCKKGKVMEAEN 588

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           + ++ +  K  + D +T+ ++I G  + G +Q+AL L Y+ M + G  P + TY+ ++ G
Sbjct: 589 LASE-ITRKGLSFDVITYNSLISGYSSAGNVQKALEL-YETMKKSGIKPTLNTYHRLIAG 646

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
             +   V   ++++  ML + +V D   Y  +I    E   + +A      +       D
Sbjct: 647 CGKEGLVL-VEKIYQEMLQMNLVPDRVIYNALIHCYVEHGDVQKACSLHSAMEAQGIQPD 705

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              Y  +I G  + G++H+  + + ++   G+ P    Y+++I G CKL     AY   R
Sbjct: 706 KMTYNCLILGHFKEGRMHKVKNLVNDMKIRGLIPKTETYDILIVGHCKLKDFDGAYVWYR 765

Query: 481 EMRKNGLNP 489
           EM +NG  P
Sbjct: 766 EMFENGFTP 774



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/264 (22%), Positives = 116/264 (43%), Gaps = 1/264 (0%)

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
           RT      +R++ L K+P    + L  +      P     + ++   C   ++      L
Sbjct: 75  RTETARRLIRSMLLPKSPFSSPSHLYTLFSLSSTPMKPLFSDMLLSICSESKMVSESAEL 134

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
             ++      P   +    +  L++  R ++ L L  +++ + G  P    Y   ++   
Sbjct: 135 YMLMKKDGVLPSVASLNLFLESLVSTKRYEDTLQLFSEIV-ESGLRPDQFMYGKAIQAAV 193

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
           +L  ++ A E+  CM   GV      Y +VI GLC+  ++ +A++ +D+++      +  
Sbjct: 194 KLGDLKRAIELMTCMKRGGVSPGVFVYNVVIGGLCKEKRMKDAEKLFDEMLDRRVAPNRI 253

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
            Y  +I G C+ G++ EA +    +    V P I+ +N +++G C+  M  EA ++L EM
Sbjct: 254 TYNTLIDGYCKVGQLEEAFNIRERMKVENVEPTIITFNSLLNGLCRAQMMEEAQRVLEEM 313

Query: 483 RKNGLNPDAVTWRILDKLHGNRGN 506
              G  PD  T+  L   H   GN
Sbjct: 314 EVYGFVPDRFTYTTLFDGHLKCGN 337



 Score = 42.4 bits (98), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 5/106 (4%)

Query: 6   GLSRVGEAHK---LFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           G  + G  HK   L  DMK RG +P   +Y  LI G+C+  + D AY  + EM   G  P
Sbjct: 715 GHFKEGRMHKVKNLVNDMKIRGLIPKTETYDILIVGHCKLKDFDGAYVWYREMFENGFTP 774

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFA 108
           +      L+ G+        A+V+  ++   MK ++D   +  A A
Sbjct: 775 SVSICDNLITGLREEGRSHDADVICSEM--NMKGKDDCRADEDASA 818


>gi|326510773|dbj|BAJ91734.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 711

 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 127/491 (25%), Positives = 225/491 (45%), Gaps = 10/491 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC    V  A  L   M   G  PN V+YT++IHGY   G  + A K+F EM   G+
Sbjct: 158 INALCKARAVDNAELLLRQMVDNGVPPNKVTYTSMIHGYSTLGRWEEATKMFREMTGRGL 217

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P+ ++++  +  + +    + A  + + +  +         N   +  L+     EG  
Sbjct: 218 IPDIVSWNSFMDSLCKHGRSKEAAEIFYSMAAKGHRP-----NIVTYGILLHGYATEGCF 272

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            ++      M     V        +ID+  + G    A  ++  M+ +GL+P + +Y+++
Sbjct: 273 ADMMSFFNTMKGDGIVANCLVFTILIDAYAKRGMMDEAMLILSEMQGQGLSPDVFTYSTL 332

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +  LC+ G    A     + I  G  P+   Y  L++G C   DL KA++++  M++   
Sbjct: 333 ISALCRMGRLADAVDKFNQMIGTGVQPNTVVYHSLIQGFCTHGDLVKAKELVYEMMN-NG 391

Query: 241 VDRTRIC--NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
           + R  I   N  + ++C      +  ++   +     + D+I  NT+I+G+C +G + +A
Sbjct: 392 IPRPNIAFFNSIVHSICKEGRVMDAHHIFDLVKDIGERSDIIMFNTLIDGYCLVGEMGKA 451

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
             VL+ M++     PD  T+ T++ G    GRI + LN L++ M  +   P  VTYN +L
Sbjct: 452 FSVLDAMISAGI-GPDTFTYNTLVNGYFKSGRIDDGLN-LFREMSDKKIKPTTVTYNIIL 509

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
            GLFR  R   A+++ + M+G G      TY I++ GLC +N  DEA   +  +   +  
Sbjct: 510 DGLFRAGRTVAAQKMLHEMIGCGTTVSLPTYNIILKGLCRNNCTDEAIVMFQKLCTMNVK 569

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI 478
            +      MI  +    +  EA      + DSG+ PN   Y ++I    K     EA  +
Sbjct: 570 FNITTLNTMINSMYTVQRREEAKDLFSAISDSGLVPNASTYGIMIRNLLKEGSVEEADNM 629

Query: 479 LREMRKNGLNP 489
              M K+G  P
Sbjct: 630 FSSMEKSGCAP 640



 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 126/501 (25%), Positives = 224/501 (44%), Gaps = 43/501 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHV--PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHC 58
           + +LC  +R  +A  L   M     V  P+VV+Y T+IHG+ + G++  A  ++ EM   
Sbjct: 86  LKRLCDDNRSQQALDLLRMMAKEEGVCSPDVVTYNTVIHGFFKEGKIGKACNLYHEMMQQ 145

Query: 59  GVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREG 118
           G +P+ +T++ ++  + + R V+ A +L+ ++           V+N    N V       
Sbjct: 146 GFVPDVVTHNSIINALCKARAVDNAELLLRQM-----------VDNGVPPNKVT------ 188

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
           Y +                       MI      GR   A+++   M  RGL P +VS+N
Sbjct: 189 YTS-----------------------MIHGYSTLGRWEEATKMFREMTGRGLIPDIVSWN 225

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
           S +  LCKHG    A ++       G+ P+  TY +L+ G   E            M   
Sbjct: 226 SFMDSLCKHGRSKEAAEIFYSMAAKGHRPNIVTYGILLHGYATEGCFADMMSFFNTMKGD 285

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
             V    +  I + A        E + +L  M      PDV T +T+I+  C+MGR+ +A
Sbjct: 286 GIVANCLVFTILIDAYAKRGMMDEAMLILSEMQGQGLSPDVFTYSTLISALCRMGRLADA 345

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
           +   N M+ G    P+ V + ++I G    G + +A  L+Y++M      P I  +N+++
Sbjct: 346 VDKFNQMI-GTGVQPNTVVYHSLIQGFCTHGDLVKAKELVYEMMNNGIPRPNIAFFNSIV 404

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
             + +  RV +A  +F+ +  IG  +D   +  +IDG C   ++ +A    D ++     
Sbjct: 405 HSICKEGRVMDAHHIFDLVKDIGERSDIIMFNTLIDGYCLVGEMGKAFSVLDAMISAGIG 464

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI 478
            D + Y  ++ G  +SG+I + ++   E+ D  + P  V YN+++DG  +      A ++
Sbjct: 465 PDTFTYNTLVNGYFKSGRIDDGLNLFREMSDKKIKPTTVTYNIILDGLFRAGRTVAAQKM 524

Query: 479 LREMRKNGLNPDAVTWRILDK 499
           L EM   G      T+ I+ K
Sbjct: 525 LHEMIGCGTTVSLPTYNIILK 545



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 91/329 (27%), Positives = 147/329 (44%), Gaps = 40/329 (12%)

Query: 207 PSEHTYKVLVEGLCGESDLEKARKVLQFML-SKKDVDRTRICNIYLRALCLIKNPTELLN 265
           P+  TY V++ G C     E        +L +    D+T   N  L+ LC  K   + + 
Sbjct: 6   PTIFTYGVVMNGCCRARRPELGLAFFGRLLRTGLKADKTA-ANTVLKCLCCTKRTDDAVK 64

Query: 266 VLVF-MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK-FCAPDAVTFTTIIF 323
           VL+  M +  C PD  +   V+   C   R ++AL +L  M   +  C+PD VT+ T+I 
Sbjct: 65  VLLRRMTELGCVPDAFSYAIVLKRLCDDNRSQQALDLLRMMAKEEGVCSPDVVTYNTVIH 124

Query: 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 383
           G    G+I +A NL +++M Q+G+ P +VT+N+++  L + R V+ A+ +   M+  GV 
Sbjct: 125 GFFKEGKIGKACNLYHEMM-QQGFVPDVVTHNSIINALCKARAVDNAELLLRQMVDNGVP 183

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
            +  TY  +I G     + +EA + + ++     I D   + + +  LC+ G+  EA   
Sbjct: 184 PNKVTYTSMIHGYSTLGRWEEATKMFREMTGRGLIPDIVSWNSFMDSLCKHGRSKEAAEI 243

Query: 444 LYELVDSGVTPNIVCY-----------------------------------NVVIDGACK 468
            Y +   G  PNIV Y                                    ++ID   K
Sbjct: 244 FYSMAAKGHRPNIVTYGILLHGYATEGCFADMMSFFNTMKGDGIVANCLVFTILIDAYAK 303

Query: 469 LSMKREAYQILREMRKNGLNPDAVTWRIL 497
             M  EA  IL EM+  GL+PD  T+  L
Sbjct: 304 RGMMDEAMLILSEMQGQGLSPDVFTYSTL 332



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 94/394 (23%), Positives = 174/394 (44%), Gaps = 76/394 (19%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           EA  +  +M+ +G  P+V +Y+TLI   CR G +  A   F++M   GV PN++ Y  L+
Sbjct: 309 EAMLILSEMQGQGLSPDVFTYSTLISALCRMGRLADAVDKFNQMIGTGVQPNTVVYHSLI 368

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV---NEVFRIAE 128
           +G     D+ +A  L++++        ++    A F ++V S+C+EG V   + +F + +
Sbjct: 369 QGFCTHGDLVKAKELVYEMMNNGIPRPNI----AFFNSIVHSICKEGRVMDAHHIFDLVK 424

Query: 129 DMPQ--------------------GKSVN------------EEFACGHMIDSLCRSGRNH 156
           D+ +                    GK+ +            + F    +++   +SGR  
Sbjct: 425 DIGERSDIIMFNTLIDGYCLVGEMGKAFSVLDAMISAGIGPDTFTYNTLVNGYFKSGRID 484

Query: 157 GASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLV 216
               +   M  + + P+ V+YN I+ GL + G  + A ++L E I  G   S  TY +++
Sbjct: 485 DGLNLFREMSDKKIKPTTVTYNIILDGLFRAGRTVAAQKMLHEMIGCGTTVSLPTYNIIL 544

Query: 217 EGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQ 276
           +GLC  +  ++A  + Q           ++C + ++                        
Sbjct: 545 KGLCRNNCTDEAIVMFQ-----------KLCTMNVKF----------------------- 570

Query: 277 PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALN 336
            ++ TLNT+IN    + R EEA K L   ++     P+A T+  +I  LL  G ++EA N
Sbjct: 571 -NITTLNTMINSMYTVQRREEA-KDLFSAISDSGLVPNASTYGIMIRNLLKEGSVEEADN 628

Query: 337 LLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEA 370
            ++  M + G +P     N  +R L     + +A
Sbjct: 629 -MFSSMEKSGCAPCSRLLNDTIRTLLEKGEIVKA 661


>gi|125542792|gb|EAY88931.1| hypothetical protein OsI_10416 [Oryza sativa Indica Group]
          Length = 796

 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 135/478 (28%), Positives = 228/478 (47%), Gaps = 20/478 (4%)

Query: 27  PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVL 86
           PN  ++  L+H +C  G +  A      M+  G+ P+++TY+ L+    R   +  A  L
Sbjct: 206 PNHYTFNLLVHTHCSKGTLADALATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARAL 265

Query: 87  MFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDM------PQGKSVNEEF 140
           +     RMK +  ++     +  LV +  R G++ +  ++ E M      P  ++ N   
Sbjct: 266 L----ARMKRD-GIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNV-L 319

Query: 141 ACGHMIDSLCRSGRNHGASRVVYVMRKRGLT-PSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
           A G     LC++G+   A R+   M + G   P +V+YN++V    K      A +LLEE
Sbjct: 320 AMG-----LCQAGKVDEAFRLKDEMERLGTALPDVVTYNTLVDACFKWRCSSDALRLLEE 374

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
               G  P+  T+ ++V+ LC E  LE+A   L+ +  +         N  + A C   N
Sbjct: 375 MRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGN 434

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
             +   ++  M+    + D  TLNTV+   CKM R E+A ++L+      F  PD V++ 
Sbjct: 435 VAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFV-PDEVSYG 493

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
           T++         + AL L  Q++ +R   P I TYN +++GL R+ R++EA +  N  + 
Sbjct: 494 TVMAAYFKEYNPEPALRLWDQMI-ERKLIPSISTYNTLIKGLCRMERLKEAIDKLNEFVE 552

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
            G+V D TTY I+I   C+   L+ A RF + +V  S   D      ++ GLC  GK+ +
Sbjct: 553 KGLVPDETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDK 612

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           A+      V+ G   +++ YN +I   CK+     A     +M   GL PDA T+ ++
Sbjct: 613 ALKLFESWVEKGKKVDVITYNTLIQSMCKVGDVDTALHFFDDMEVKGLQPDAFTYNVV 670



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 131/486 (26%), Positives = 231/486 (47%), Gaps = 14/486 (2%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C    + +A      M+  G  P+ V+Y TL++ +CR G +  A  +   M+  G+ P  
Sbjct: 219 CSKGTLADALATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKRDGIAPTQ 278

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKE---EEDLSVNNAAFANLVDSLCREGYVN 121
            TY+ LV    R   +++A     K+ E M     E DL   N     L   LC+ G V+
Sbjct: 279 PTYNTLVSAFARLGWIKQAT----KVVESMTAYGFEPDLRTYNV----LAMGLCQAGKVD 330

Query: 122 EVFRIAEDMPQ-GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           E FR+ ++M + G ++ +      ++D+  +   +  A R++  MR +G+ P+LV++N +
Sbjct: 331 EAFRLKDEMERLGTALPDVVTYNTLVDACFKWRCSSDALRLLEEMRDKGVKPTLVTHNIV 390

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           V  LCK G    A   LE+  + G  P   TY  L++  C   ++ KA  ++  M+ K  
Sbjct: 391 VKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKGL 450

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
              T   N  L  LC +K   +   +L    Q    PD ++  TV+  + K    E AL+
Sbjct: 451 KMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALR 510

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           + + M+  K   P   T+ T+I GL  + R++EA++ L + + ++G  P   TYN ++  
Sbjct: 511 LWDQMIERKLI-PSISTYNTLIKGLCRMERLKEAIDKLNEFV-EKGLVPDETTYNIIIHA 568

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
             +   +E A    N M+      D  T   +++GLC   +LD+A + ++  V      D
Sbjct: 569 YCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWVEKGKKVD 628

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              Y  +I+ +C+ G +  A+HF  ++   G+ P+   YNVV+    +     EA+ +L 
Sbjct: 629 VITYNTLIQSMCKVGDVDTALHFFDDMEVKGLQPDAFTYNVVLSALSEAGRSEEAHNMLH 688

Query: 481 EMRKNG 486
           ++  +G
Sbjct: 689 KLADSG 694



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 113/445 (25%), Positives = 188/445 (42%), Gaps = 63/445 (14%)

Query: 3   QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
            LC   ++ EA      +   G  P+V++Y TLI  YC+ G +  A+ + DEM   G+  
Sbjct: 393 SLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKM 452

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           ++ T                 N +++ L  +MK  ED                       
Sbjct: 453 DTFTL----------------NTVLYNLC-KMKRYEDAE--------------------- 474

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
              +    PQ   V +E + G ++ +  +      A R+   M +R L PS+ +YN+++ 
Sbjct: 475 --ELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNTLIK 532

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           GLC+      A   L E ++ G +P E TY +++   C E DLE A +    M+      
Sbjct: 533 GLCRMERLKEAIDKLNEFVEKGLVPDETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKP 592

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
               CN  +  LCL     + L +    ++   + DVIT NT+I   CK+G ++ AL   
Sbjct: 593 DVVTCNTLMNGLCLHGKLDKALKLFESWVEKGKKVDVITYNTLIQSMCKVGDVDTALHFF 652

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQV-----MPQRGYSPGIVTYNA- 356
           +DM   K   PDA T+  ++  L   GR +EA N+L+++     + Q    P +   +A 
Sbjct: 653 DDMEV-KGLQPDAFTYNVVLSALSEAGRSEEAHNMLHKLADSGKLSQSFACPLLKPSSAD 711

Query: 357 -----VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDD 411
                   G       E+A++  N +          TY   ++GLC   QL EAK   D+
Sbjct: 712 EADVKEHEGKPEAESSEKAQD--NAL---------ETYMERLNGLCTGGQLKEAKAVLDE 760

Query: 412 IVWPSNIHDNYVYAAMIKGLCRSGK 436
           ++      D   Y  +++GL +  K
Sbjct: 761 MMQKGMPVDCSTYITLMEGLIKRQK 785



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 110/481 (22%), Positives = 213/481 (44%), Gaps = 58/481 (12%)

Query: 36  IHGYCRTGEMDVAYKVFDEMRHC-GVLPNSLTYSVLVRGVLRTRD-VERANVLMFKLWER 93
           +  Y R     +A ++   +R   GV P+    + ++  + R+   + +A++ +F+    
Sbjct: 142 LSAYARLRLPHLAAQLLHSLRRRRGVRPSLQAANAVLSALSRSPSTLPQASLDVFRSLIE 201

Query: 94  MKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFAC-GHMIDSLCRS 152
           ++    L  N+  F  LV + C +G + +       M QG  ++ +      ++++ CR 
Sbjct: 202 LR----LHPNHYTFNLLVHTHCSKGTLADALATLSTM-QGFGLSPDAVTYNTLLNAHCRK 256

Query: 153 GRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTY 212
           G    A  ++  M++ G+ P+  +YN++V    + G   +A +++E    +G+ P   TY
Sbjct: 257 GMLGEARALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTY 316

Query: 213 KVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC-------NIYLRALCLIKNPTELLN 265
            VL  GLC    +++A ++      K +++R           N  + A    +  ++ L 
Sbjct: 317 NVLAMGLCQAGKVDEAFRL------KDEMERLGTALPDVVTYNTLVDACFKWRCSSDALR 370

Query: 266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 325
           +L  M     +P ++T N V+   CK G++EEAL  L + +A +  APD +T+ T+I   
Sbjct: 371 LLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKL-EKIAEEGLAPDVITYNTLIDAY 429

Query: 326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 385
              G + +A  L+ + M  +G      T N VL  L +++R E+A+E+ +     G V D
Sbjct: 430 CKAGNVAKAFTLMDE-MVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPD 488

Query: 386 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY 445
             +Y  V+    +    + A R WD                                   
Sbjct: 489 EVSYGTVMAAYFKEYNPEPALRLWD----------------------------------- 513

Query: 446 ELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
           ++++  + P+I  YN +I G C++   +EA   L E  + GL PD  T+ I+   +   G
Sbjct: 514 QMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNEFVEKGLVPDETTYNIIIHAYCKEG 573

Query: 506 N 506
           +
Sbjct: 574 D 574



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 88/191 (46%), Gaps = 14/191 (7%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M+ LC   ++ +A KLF     +G   +V++Y TLI   C+ G++D A   FD+M   G+
Sbjct: 601 MNGLCLHGKLDKALKLFESWVEKGKKVDVITYNTLIQSMCKVGDVDTALHFFDDMEVKGL 660

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P++ TY+V++  +      E A+ ++ KL +  K  +       A   L  S   E  V
Sbjct: 661 QPDAFTYNVVLSALSEAGRSEEAHNMLHKLADSGKLSQSF-----ACPLLKPSSADEADV 715

Query: 121 NEVFRIAEDMPQGKSV-----NEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLV 175
            E     E  P+ +S      N        ++ LC  G+   A  V+  M ++G+     
Sbjct: 716 KE----HEGKPEAESSEKAQDNALETYMERLNGLCTGGQLKEAKAVLDEMMQKGMPVDCS 771

Query: 176 SYNSIVHGLCK 186
           +Y +++ GL K
Sbjct: 772 TYITLMEGLIK 782


>gi|225430498|ref|XP_002283327.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
            chloroplastic [Vitis vinifera]
 gi|296082142|emb|CBI21147.3| unnamed protein product [Vitis vinifera]
          Length = 1113

 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 143/507 (28%), Positives = 242/507 (47%), Gaps = 24/507 (4%)

Query: 9    RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
            RV EA  LF  M +    PN +S+ TL+   C+ GE+D+A K+   M      P+ LTY+
Sbjct: 592  RVQEATALFKGMIADDCPPNTISFNTLLDCLCKNGEVDLALKMLFRMTEMNCFPDVLTYN 651

Query: 69   VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
             ++ G+++   V  A    F L+ +MK+   +  +      L+  + ++G + + FR+A+
Sbjct: 652  TVIYGLIKENRVNYA----FWLFHQMKKV--IYPDYVTLCTLLPGVIKDGRIEDAFRVAK 705

Query: 129  DMPQ------GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRG--LTPSLVSYNSI 180
            +           S  E+   G +I++          S V   + +    L P       +
Sbjct: 706  EFVHHVGDHADGSFWEDLMGGILIEAEIGQSILFAESLVCNTICEDDSVLIP-------L 758

Query: 181  VHGLCKHGGCMRAYQL-LEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
            V  LCKHG  + AY + L+    F   PS   Y  L++GL      E A  +   M +  
Sbjct: 759  VKFLCKHGKAVDAYNVFLKLTKSFCITPSLEAYNSLIDGLLKARLTEMAWGLFYKMKNAG 818

Query: 240  DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                    N++L AL       EL ++   ML   C+P+ IT N VI G  K   +++A+
Sbjct: 819  CTPDVFTYNLFLDALGKSGKIKELFDLYEEMLFRGCKPNTITHNIVIFGLVKSNSLDKAI 878

Query: 300  KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
             +  D+++G F +P   T+  +I GLL +GR++EA    ++ M   G  P    YN ++ 
Sbjct: 879  DLYYDLMSGDF-SPTPWTYGPLIDGLLKLGRLEEA-KQFFEEMLDYGCMPNCPLYNILMN 936

Query: 360  GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
            G  +   VE A E+F  M+  G+  D  +Y+I++D LC   ++D+A  +++++       
Sbjct: 937  GFGKQGDVETACELFRRMVKEGIRPDLKSYSIMVDCLCMVGKVDDALHYFEELKLSGLDP 996

Query: 420  DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
            D   Y  MI GL RS ++ EA+    E+ + G+TP++  YN +I       M  EA ++ 
Sbjct: 997  DLVCYNLMINGLGRSQRVEEALSLFDEMRNRGITPDLYTYNALILNLGIAGMVEEAGKMY 1056

Query: 480  REMRKNGLNPDAVTWRILDKLHGNRGN 506
             E++  GL P+  T+  L + H   GN
Sbjct: 1057 EELQLKGLEPNVFTYNALIRGHSMSGN 1083



 Score =  185 bits (469), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 135/509 (26%), Positives = 239/509 (46%), Gaps = 14/509 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D+      +    + + +M++ G++P+VV++T LI   C+ G++D A+   D M+  GV
Sbjct: 339 LDKFSDHGDLDAIKEFWSEMEADGYLPDVVTFTILIDALCKVGKVDEAFGTLDVMKKQGV 398

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANL--VDSLCREG 118
            PN  TY+ L+ G+LR   ++ A     +L+  M   E L +   A+  +  +D   + G
Sbjct: 399 APNLHTYNTLICGLLRLNRLDEA----LELFNSM---ESLGLETTAYTYILFIDYYGKSG 451

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
              +  +  E M     V    AC   + SL   GR   A      ++K GL P  ++YN
Sbjct: 452 ESGKAIKTFEKMKTNGIVPNIVACNASLYSLAEQGRLEEAKEFFNGLKKCGLAPDAITYN 511

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
            ++    K G    A +LL E  + G  P       L++ L     +++A K+ Q M   
Sbjct: 512 ILMRCYGKAGRVDDAIKLLSEMEENGCDPEVVIINSLIDTLYKADRVDEAWKMFQRMKEM 571

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
           K        N  L  L       E   +   M+   C P+ I+ NT+++  CK G ++ A
Sbjct: 572 KLAPTVVTYNTLLAGLGKEGRVQEATALFKGMIADDCPPNTISFNTLLDCLCKNGEVDLA 631

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
           LK+L  M     C PD +T+ T+I+GL+   R+  A  L +Q+  ++   P  VT   +L
Sbjct: 632 LKMLFRMTEMN-CFPDVLTYNTVIYGLIKENRVNYAFWLFHQM--KKVIYPDYVTLCTLL 688

Query: 359 RGLFRLRRVEEAKEVFNCML-GIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 417
            G+ +  R+E+A  V    +  +G  AD + +  ++ G+    ++ ++  F + +V  + 
Sbjct: 689 PGVIKDGRIEDAFRVAKEFVHHVGDHADGSFWEDLMGGILIEAEIGQSILFAESLVCNTI 748

Query: 418 IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG-VTPNIVCYNVVIDGACKLSMKREAY 476
             D+ V   ++K LC+ GK  +A +   +L  S  +TP++  YN +IDG  K  +   A+
Sbjct: 749 CEDDSVLIPLVKFLCKHGKAVDAYNVFLKLTKSFCITPSLEAYNSLIDGLLKARLTEMAW 808

Query: 477 QILREMRKNGLNPDAVTWRILDKLHGNRG 505
            +  +M+  G  PD  T+ +     G  G
Sbjct: 809 GLFYKMKNAGCTPDVFTYNLFLDALGKSG 837



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 120/485 (24%), Positives = 228/485 (47%), Gaps = 13/485 (2%)

Query: 16  LFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVL 75
           L  +M+S G  PN+ ++T  I    R G++D AY +   M   G  P+ +TY+VL+  + 
Sbjct: 249 LLQEMESLGLRPNIYTFTICIRILGRAGKIDEAYGILKRMDDAGCGPDVVTYTVLIDALC 308

Query: 76  RTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKS 135
               +  A  L  K+     + + ++     +  L+D     G ++ +     +M     
Sbjct: 309 NAGKLNNAKELFLKMKASSHKPDRVT-----YITLLDKFSDHGDLDAIKEFWSEMEADGY 363

Query: 136 VNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQ 195
           + +      +ID+LC+ G+   A   + VM+K+G+ P+L +YN+++ GL +      A +
Sbjct: 364 LPDVVTFTILIDALCKVGKVDEAFGTLDVMKKQGVAPNLHTYNTLICGLLRLNRLDEALE 423

Query: 196 LLEEGIQFGYLPSEHTYKVLVE--GLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRA 253
           L       G   + +TY + ++  G  GES   KA K  + M +   V     CN  L +
Sbjct: 424 LFNSMESLGLETTAYTYILFIDYYGKSGESG--KAIKTFEKMKTNGIVPNIVACNASLYS 481

Query: 254 LCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAP 313
           L       E       + +    PD IT N ++  + K GR+++A+K+L++M     C P
Sbjct: 482 LAEQGRLEEAKEFFNGLKKCGLAPDAITYNILMRCYGKAGRVDDAIKLLSEMEENG-CDP 540

Query: 314 DAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEV 373
           + V   ++I  L    R+ EA   ++Q M +   +P +VTYN +L GL +  RV+EA  +
Sbjct: 541 EVVIINSLIDTLYKADRVDEAWK-MFQRMKEMKLAPTVVTYNTLLAGLGKEGRVQEATAL 599

Query: 374 FNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR 433
           F  M+      ++ ++  ++D LC++ ++D A +    +   +   D   Y  +I GL +
Sbjct: 600 FKGMIADDCPPNTISFNTLLDCLCKNGEVDLALKMLFRMTEMNCFPDVLTYNTVIYGLIK 659

Query: 434 SGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN-GLNPDAV 492
             +++ A  +L+  +   + P+ V    ++ G  K     +A+++ +E   + G + D  
Sbjct: 660 ENRVNYA-FWLFHQMKKVIYPDYVTLCTLLPGVIKDGRIEDAFRVAKEFVHHVGDHADGS 718

Query: 493 TWRIL 497
            W  L
Sbjct: 719 FWEDL 723



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 125/519 (24%), Positives = 227/519 (43%), Gaps = 47/519 (9%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           EA      M+  G V N  SY  LIH   ++G    A KV+  M   G+ P+  TYS L+
Sbjct: 175 EAPVALEKMRKVGFVLNGYSYIGLIHLLLKSGFCREALKVYRRMVSEGIKPSLKTYSALM 234

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP 131
             + + RD+E    L+ ++     E   L  N   F   +  L R G ++E + I + M 
Sbjct: 235 VALGKRRDIETVMGLLQEM-----ESLGLRPNIYTFTICIRILGRAGKIDEAYGILKRMD 289

Query: 132 QGKSVNEEFACGHMIDSLCRSGR--------------NHGASRVVYV------------- 164
                 +      +ID+LC +G+              +H   RV Y+             
Sbjct: 290 DAGCGPDVVTYTVLIDALCNAGKLNNAKELFLKMKASSHKPDRVTYITLLDKFSDHGDLD 349

Query: 165 --------MRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLV 216
                   M   G  P +V++  ++  LCK G    A+  L+   + G  P+ HTY  L+
Sbjct: 350 AIKEFWSEMEADGYLPDVVTFTILIDALCKVGKVDEAFGTLDVMKKQGVAPNLHTYNTLI 409

Query: 217 EGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQ 276
            GL   + L++A ++   M S           +++          + +     M      
Sbjct: 410 CGLLRLNRLDEALELFNSMESLGLETTAYTYILFIDYYGKSGESGKAIKTFEKMKTNGIV 469

Query: 277 PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC--APDAVTFTTIIFGLLNVGRIQEA 334
           P+++  N  +    + GR+EEA +  N +   K C  APDA+T+  ++      GR+ +A
Sbjct: 470 PNIVACNASLYSLAEQGRLEEAKEFFNGL---KKCGLAPDAITYNILMRCYGKAGRVDDA 526

Query: 335 LNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVID 394
           + LL + M + G  P +V  N+++  L++  RV+EA ++F  M  + +     TY  ++ 
Sbjct: 527 IKLLSE-MEENGCDPEVVIINSLIDTLYKADRVDEAWKMFQRMKEMKLAPTVVTYNTLLA 585

Query: 395 GLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTP 454
           GL +  ++ EA   +  ++      +   +  ++  LC++G++  A+  L+ + +    P
Sbjct: 586 GLGKEGRVQEATALFKGMIADDCPPNTISFNTLLDCLCKNGEVDLALKMLFRMTEMNCFP 645

Query: 455 NIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVT 493
           +++ YN VI G  K +    A+ +  +M+K  + PD VT
Sbjct: 646 DVLTYNTVIYGLIKENRVNYAFWLFHQMKKV-IYPDYVT 683



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 117/516 (22%), Positives = 207/516 (40%), Gaps = 107/516 (20%)

Query: 94  MKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSG 153
           +K + + ++++     ++ S+         F    +MP+     E   C ++++ L    
Sbjct: 79  VKRKPESTMSSEEVYRVLKSISDPNQAFSFFNSVAEMPRVIHTTE--TCNYVLEMLRAHR 136

Query: 154 RNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYK 213
           R      V  +M+K+ +  S+ +Y +I   L   GG   A   LE+  + G++ + ++Y 
Sbjct: 137 RVEDMVVVFNLMQKQIIKRSINTYLTIFKVLYIRGGLREAPVALEKMRKVGFVLNGYSYI 196

Query: 214 VLVEGLCGESDLEKARKVLQFMLS-------------------KKDVDRTRIC------- 247
            L+  L       +A KV + M+S                   ++D++            
Sbjct: 197 GLIHLLLKSGFCREALKVYRRMVSEGIKPSLKTYSALMVALGKRRDIETVMGLLQEMESL 256

Query: 248 ----NIYLRALCL-----IKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
               NIY   +C+          E   +L  M    C PDV+T   +I+  C  G++  A
Sbjct: 257 GLRPNIYTFTICIRILGRAGKIDEAYGILKRMDDAGCGPDVVTYTVLIDALCNAGKLNNA 316

Query: 299 LKVLNDMVAG--------------KFC--------------------APDAVTFTTIIFG 324
            ++   M A               KF                      PD VTFT +I  
Sbjct: 317 KELFLKMKASSHKPDRVTYITLLDKFSDHGDLDAIKEFWSEMEADGYLPDVVTFTILIDA 376

Query: 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 384
           L  VG++ EA   L  VM ++G +P + TYN ++ GL RL R++EA E+FN M  +G+  
Sbjct: 377 LCKVGKVDEAFGTL-DVMKKQGVAPNLHTYNTLICGLLRLNRLDEALELFNSMESLGLET 435

Query: 385 DSTTYAIVID-----------------------------------GLCESNQLDEAKRFW 409
            + TY + ID                                    L E  +L+EAK F+
Sbjct: 436 TAYTYILFIDYYGKSGESGKAIKTFEKMKTNGIVPNIVACNASLYSLAEQGRLEEAKEFF 495

Query: 410 DDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKL 469
           + +       D   Y  +++   ++G++ +A+  L E+ ++G  P +V  N +ID   K 
Sbjct: 496 NGLKKCGLAPDAITYNILMRCYGKAGRVDDAIKLLSEMEENGCDPEVVIINSLIDTLYKA 555

Query: 470 SMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
               EA+++ + M++  L P  VT+  L    G  G
Sbjct: 556 DRVDEAWKMFQRMKEMKLAPTVVTYNTLLAGLGKEG 591



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/357 (24%), Positives = 169/357 (47%), Gaps = 8/357 (2%)

Query: 35   LIHGYCRTGEMDVAYKVFDEM-RHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWER 93
            L+   C+ G+   AY VF ++ +   + P+   Y+ L+ G+L+ R  E A  L +K+   
Sbjct: 758  LVKFLCKHGKAVDAYNVFLKLTKSFCITPSLEAYNSLIDGLLKARLTEMAWGLFYKM--- 814

Query: 94   MKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSG 153
              +    + +   +   +D+L + G + E+F + E+M              +I  L +S 
Sbjct: 815  --KNAGCTPDVFTYNLFLDALGKSGKIKELFDLYEEMLFRGCKPNTITHNIVIFGLVKSN 872

Query: 154  RNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYK 213
                A  + Y +     +P+  +Y  ++ GL K G    A Q  EE + +G +P+   Y 
Sbjct: 873  SLDKAIDLYYDLMSGDFSPTPWTYGPLIDGLLKLGRLEEAKQFFEEMLDYGCMPNCPLYN 932

Query: 214  VLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQT 273
            +L+ G   + D+E A ++ + M+ +      +  +I +  LC++    + L+    +  +
Sbjct: 933  ILMNGFGKQGDVETACELFRRMVKEGIRPDLKSYSIMVDCLCMVGKVDDALHYFEELKLS 992

Query: 274  QCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQE 333
               PD++  N +ING  +  R+EEAL + ++M   +   PD  T+  +I  L   G ++E
Sbjct: 993  GLDPDLVCYNLMINGLGRSQRVEEALSLFDEM-RNRGITPDLYTYNALILNLGIAGMVEE 1051

Query: 334  ALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYA 390
            A   +Y+ +  +G  P + TYNA++RG       + A  V+  M+  G   ++ T+A
Sbjct: 1052 A-GKMYEELQLKGLEPNVFTYNALIRGHSMSGNPDRAYAVYKKMMVGGCRPNTGTFA 1107



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 115/226 (50%), Gaps = 7/226 (3%)

Query: 12   EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
            +A  L++D+ S    P   +Y  LI G  + G ++ A + F+EM   G +PN   Y++L+
Sbjct: 876  KAIDLYYDLMSGDFSPTPWTYGPLIDGLLKLGRLEEAKQFFEEMLDYGCMPNCPLYNILM 935

Query: 72   RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP 131
             G  +  DVE A     +L+ RM  +E +  +  +++ +VD LC  G V++     E++ 
Sbjct: 936  NGFGKQGDVETA----CELFRRMV-KEGIRPDLKSYSIMVDCLCMVGKVDDALHYFEEL- 989

Query: 132  QGKSVNEEFACGH-MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGC 190
            +   ++ +  C + MI+ L RS R   A  +   MR RG+TP L +YN+++  L   G  
Sbjct: 990  KLSGLDPDLVCYNLMINGLGRSQRVEEALSLFDEMRNRGITPDLYTYNALILNLGIAGMV 1049

Query: 191  MRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFML 236
              A ++ EE    G  P+  TY  L+ G     + ++A  V + M+
Sbjct: 1050 EEAGKMYEELQLKGLEPNVFTYNALIRGHSMSGNPDRAYAVYKKMM 1095



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 71/309 (22%), Positives = 133/309 (43%), Gaps = 6/309 (1%)

Query: 13   AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVR 72
            A  LF+ MK+ G  P+V +Y   +    ++G++   + +++EM   G  PN++T+++++ 
Sbjct: 807  AWGLFYKMKNAGCTPDVFTYNLFLDALGKSGKIKELFDLYEEMLFRGCKPNTITHNIVIF 866

Query: 73   GVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQ 132
            G++++  +++A  L + L        D S     +  L+D L + G + E  +  E+M  
Sbjct: 867  GLVKSNSLDKAIDLYYDLMSG-----DFSPTPWTYGPLIDGLLKLGRLEEAKQFFEEMLD 921

Query: 133  GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMR 192
               +        +++   + G    A  +   M K G+ P L SY+ +V  LC  G    
Sbjct: 922  YGCMPNCPLYNILMNGFGKQGDVETACELFRRMVKEGIRPDLKSYSIMVDCLCMVGKVDD 981

Query: 193  AYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLR 252
            A    EE    G  P    Y +++ GL     +E+A  +   M ++         N  + 
Sbjct: 982  ALHYFEELKLSGLDPDLVCYNLMINGLGRSQRVEEALSLFDEMRNRGITPDLYTYNALIL 1041

Query: 253  ALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCA 312
             L +     E   +   +     +P+V T N +I G    G  + A  V   M+ G  C 
Sbjct: 1042 NLGIAGMVEEAGKMYEELQLKGLEPNVFTYNALIRGHSMSGNPDRAYAVYKKMMVGG-CR 1100

Query: 313  PDAVTFTTI 321
            P+  TF  +
Sbjct: 1101 PNTGTFAQL 1109



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 92/209 (44%), Gaps = 46/209 (22%)

Query: 10   VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSV 69
            V  A +LF  M   G  P++ SY+ ++   C  G++D A   F+E++  G+ P+ + Y++
Sbjct: 944  VETACELFRRMVKEGIRPDLKSYSIMVDCLCMVGKVDDALHYFEELKLSGLDPDLVCYNL 1003

Query: 70   LVRGVLRTRDVERANVLMFKLWERMKEE---EDLSVNNAAFANLVDSLCREGYVNEVFRI 126
            ++ G+ R++ VE A      L++ M+      DL   NA   NL  +    G V E  ++
Sbjct: 1004 MINGLGRSQRVEEA----LSLFDEMRNRGITPDLYTYNALILNLGIA----GMVEEAGKM 1055

Query: 127  AEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK 186
             E+                                   ++ +GL P++ +YN+++ G   
Sbjct: 1056 YEE-----------------------------------LQLKGLEPNVFTYNALIRGHSM 1080

Query: 187  HGGCMRAYQLLEEGIQFGYLPSEHTYKVL 215
             G   RAY + ++ +  G  P+  T+  L
Sbjct: 1081 SGNPDRAYAVYKKMMVGGCRPNTGTFAQL 1109



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 54/95 (56%), Gaps = 4/95 (4%)

Query: 1    MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
            +D LC + +V +A   F ++K  G  P++V Y  +I+G  R+  ++ A  +FDEMR+ G+
Sbjct: 970  VDCLCMVGKVDDALHYFEELKLSGLDPDLVCYNLMINGLGRSQRVEEALSLFDEMRNRGI 1029

Query: 61   LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMK 95
             P+  TY+ L+  +     VE A     K++E ++
Sbjct: 1030 TPDLYTYNALILNLGIAGMVEEAG----KMYEELQ 1060


>gi|242071495|ref|XP_002451024.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
 gi|241936867|gb|EES10012.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
          Length = 813

 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 131/512 (25%), Positives = 239/512 (46%), Gaps = 42/512 (8%)

Query: 10  VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSV 69
           V +A  LF +M  RG  P++ +Y  +++  C+   MD A  +  +M   GVLP++ TY+ 
Sbjct: 232 VNKACDLFNEMVQRGISPDLSTYNCVVNALCKARAMDKAEAILRQMVDKGVLPDNWTYNS 291

Query: 70  LVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAED 129
           L+ G   T   + A  +  K+  +    + +++N     +L+ SLC+ G + +   + + 
Sbjct: 292 LIYGYSSTGQWKEAVRVSKKMTSQGILPDVVTLN-----SLMASLCKHGKIKDARDVFDS 346

Query: 130 MPQGKSVNEEFACGHM-----------------------------------IDSLCRSGR 154
           M       + F+   M                                   I +  + G 
Sbjct: 347 MAMKGQKTDIFSYKIMLNGYATKGCLVDLTELFNLMLSDGIAPDSHIFNVLIKAYAKCGM 406

Query: 155 NHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKV 214
              A+ +   MR++G+ P +V+Y++++  LC+ G    A +   + I  G  PS  TY  
Sbjct: 407 LDRATIIFNEMREQGVEPDVVTYSTVIAALCRIGKMDDAVEKFNQMIDQGVAPSISTYHF 466

Query: 215 LVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQ 274
           L++G C   DL KA+ ++  M++K         N  +  LC +    +  N+  F +   
Sbjct: 467 LIQGFCTHGDLLKAKDLVLQMMNKGMRPDIGCFNFIINNLCKLGRVMDAQNIFDFTISIG 526

Query: 275 CQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEA 334
             P+V+  NT+++G+C +G++E AL+V + MV+     P+ V + T++ G   VGRI E 
Sbjct: 527 LHPNVMVYNTLMDGYCLVGKMENALRVFDVMVSAGI-QPNVVVYGTLVNGYCKVGRIDEG 585

Query: 335 LNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVID 394
           L+L  +++  +G  P    YN +L GLF+  R   AK  F+ M   G+  D  TY+IV+ 
Sbjct: 586 LSLFREIL-HKGIKPSTTLYNIILHGLFQAGRTVPAKVKFHEMTESGIAMDRYTYSIVLG 644

Query: 395 GLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTP 454
           GL +++  DEA   + ++   +   D      MI G+ +  ++ EA      +  SG+ P
Sbjct: 645 GLFKNSCSDEAILLFKELHAMNVKIDITTLNIMIAGMFQIRRVEEAKDLFASISRSGLVP 704

Query: 455 NIVCYNVVIDGACKLSMKREAYQILREMRKNG 486
           ++V Y++++    K  +  EA  +   M   G
Sbjct: 705 SVVTYSIMMTNLIKEGLVEEADDMFSSMENAG 736



 Score =  157 bits (398), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 136/537 (25%), Positives = 240/537 (44%), Gaps = 68/537 (12%)

Query: 17  FFDMKSRGHVPNVVSYTTLIHGY-----CRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
            F+  SR H P V+S T   +G       R     +    F ++   G+  +++  S L+
Sbjct: 91  LFNRVSRAHGPRVLSPTLHTYGILMDCCTRAHRPKLTLAFFGQVLKTGLGIDTIMISNLL 150

Query: 72  RGVLRT-RDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLC---REGYVNEVFRIA 127
           RG+    R  E  ++L+ ++       +  S     +  ++ SLC   + G  +E+ R+ 
Sbjct: 151 RGLCEAKRTAEALDILLHRMPHLGCVPDVFS-----YCIVLKSLCSDRKSGQADELLRM- 204

Query: 128 EDMPQGKSV--NEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLC 185
             M +G +V      A   +ID   + G  + A  +   M +RG++P L +YN +V+ LC
Sbjct: 205 --MAEGGAVCLPNAVAYNTVIDGFFKEGDVNKACDLFNEMVQRGISPDLSTYNCVVNALC 262

Query: 186 KHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEG--------------------------- 218
           K     +A  +L + +  G LP   TY  L+ G                           
Sbjct: 263 KARAMDKAEAILRQMVDKGVLPDNWTYNSLIYGYSSTGQWKEAVRVSKKMTSQGILPDVV 322

Query: 219 --------LCGESDLEKARKVLQFML---SKKDVDRTRI-CNIYLRALCLIKNPTELLNV 266
                   LC    ++ AR V   M     K D+   +I  N Y    CL+ + TEL N+
Sbjct: 323 TLNSLMASLCKHGKIKDARDVFDSMAMKGQKTDIFSYKIMLNGYATKGCLV-DLTELFNL 381

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
              ML     PD    N +I  + K G ++ A  + N+M   +   PD VT++T+I  L 
Sbjct: 382 ---MLSDGIAPDSHIFNVLIKAYAKCGMLDRATIIFNEM-REQGVEPDVVTYSTVIAALC 437

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
            +G++ +A+    Q++ Q G +P I TY+ +++G      + +AK++   M+  G+  D 
Sbjct: 438 RIGKMDDAVEKFNQMIDQ-GVAPSISTYHFLIQGFCTHGDLLKAKDLVLQMMNKGMRPDI 496

Query: 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN-YVYAAMIKGLCRSGKIHEAVHFLY 445
             +  +I+ LC+  ++ +A+  + D      +H N  VY  ++ G C  GK+  A+    
Sbjct: 497 GCFNFIINNLCKLGRVMDAQNIF-DFTISIGLHPNVMVYNTLMDGYCLVGKMENALRVFD 555

Query: 446 ELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
            +V +G+ PN+V Y  +++G CK+    E   + RE+   G+ P    + I+  LHG
Sbjct: 556 VMVSAGIQPNVVVYGTLVNGYCKVGRIDEGLSLFREILHKGIKPSTTLYNII--LHG 610



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 129/540 (23%), Positives = 240/540 (44%), Gaps = 39/540 (7%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC    + +A  +   M  +G +P+  +Y +LI+GY  TG+   A +V  +M   G+
Sbjct: 258 VNALCKARAMDKAEAILRQMVDKGVLPDNWTYNSLIYGYSSTGQWKEAVRVSKKMTSQGI 317

Query: 61  LP-----NSLTYSVLVRGVLR-TRDV--------ERANVLMFKLWER------------- 93
           LP     NSL  S+   G ++  RDV        ++ ++  +K+                
Sbjct: 318 LPDVVTLNSLMASLCKHGKIKDARDVFDSMAMKGQKTDIFSYKIMLNGYATKGCLVDLTE 377

Query: 94  ---MKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC 150
              +   + ++ ++  F  L+ +  + G ++    I  +M +     +      +I +LC
Sbjct: 378 LFNLMLSDGIAPDSHIFNVLIKAYAKCGMLDRATIIFNEMREQGVEPDVVTYSTVIAALC 437

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
           R G+   A      M  +G+ PS+ +Y+ ++ G C HG  ++A  L+ + +  G  P   
Sbjct: 438 RIGKMDDAVEKFNQMIDQGVAPSISTYHFLIQGFCTHGDLLKAKDLVLQMMNKGMRPDIG 497

Query: 211 TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM 270
            +  ++  LC    +  A+ +  F +S        + N  +   CL+      L V   M
Sbjct: 498 CFNFIINNLCKLGRVMDAQNIFDFTISIGLHPNVMVYNTLMDGYCLVGKMENALRVFDVM 557

Query: 271 LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR 330
           +    QP+V+   T++NG+CK+GRI+E L +  +++  K   P    +  I+ GL   GR
Sbjct: 558 VSAGIQPNVVVYGTLVNGYCKVGRIDEGLSLFREILH-KGIKPSTTLYNIILHGLFQAGR 616

Query: 331 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYA 390
              A  + +  M + G +    TY+ VL GLF+    +EA  +F  +  + V  D TT  
Sbjct: 617 TVPA-KVKFHEMTESGIAMDRYTYSIVLGGLFKNSCSDEAILLFKELHAMNVKIDITTLN 675

Query: 391 IVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 450
           I+I G+ +  +++EAK  +  I     +     Y+ M+  L + G + EA      + ++
Sbjct: 676 IMIAGMFQIRRVEEAKDLFASISRSGLVPSVVTYSIMMTNLIKEGLVEEADDMFSSMENA 735

Query: 451 GV-TPNIVCYNVVIDGACKLSMKRE---AYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           G   PN    N V+    +L  KRE   A   L ++ +   + D  T  +L  L  ++G 
Sbjct: 736 GCEQPNSQLLNHVVR---ELLEKREIVRAGTYLSKIDERSFSLDHSTTTLLIDLFSSKGT 792



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 120/238 (50%), Gaps = 3/238 (1%)

Query: 270 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG 329
           +L+T    D I ++ ++ G C+  R  EAL +L   +    C PD  ++  ++  L +  
Sbjct: 134 VLKTGLGIDTIMISNLLRGLCEAKRTAEALDILLHRMPHLGCVPDVFSYCIVLKSLCSDR 193

Query: 330 RIQEALNLLYQVMPQRGYS--PGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADST 387
           +  +A  LL ++M + G    P  V YN V+ G F+   V +A ++FN M+  G+  D +
Sbjct: 194 KSGQADELL-RMMAEGGAVCLPNAVAYNTVIDGFFKEGDVNKACDLFNEMVQRGISPDLS 252

Query: 388 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYEL 447
           TY  V++ LC++  +D+A+     +V    + DN+ Y ++I G   +G+  EAV    ++
Sbjct: 253 TYNCVVNALCKARAMDKAEAILRQMVDKGVLPDNWTYNSLIYGYSSTGQWKEAVRVSKKM 312

Query: 448 VDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
              G+ P++V  N ++   CK    ++A  +   M   G   D  +++I+   +  +G
Sbjct: 313 TSQGILPDVVTLNSLMASLCKHGKIKDARDVFDSMAMKGQKTDIFSYKIMLNGYATKG 370


>gi|255575351|ref|XP_002528578.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531974|gb|EEF33786.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 817

 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 134/554 (24%), Positives = 252/554 (45%), Gaps = 70/554 (12%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R+ +A K+F +M +   V ++V+Y TLI GYC+ GE+D A+K+ + M+   V PN
Sbjct: 221 LCREKRIRDAEKMFDEMCNINLVGSIVTYNTLIDGYCKVGELDAAFKMRERMKEKSVAPN 280

Query: 64  SLTYSVLVRGVLRTRDVERANVLM-------------------------------FKLWE 92
            +T++ L+ G+ + R ++ A  L+                                +L+E
Sbjct: 281 IITFNSLLSGLCKMRKMKEARSLLKEMEVNGFMPDGYTYSILFDGLLRCDDGNGAMELYE 340

Query: 93  RMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE-----FACGH--- 144
           +   E+ + +NN   + L++ LC++G V +   I +   +   V +E     F  G+   
Sbjct: 341 QAT-EKGIRINNYTGSILLNGLCKQGKVEKAEEILKKFTENGLVADEVIYNTFVNGYCRI 399

Query: 145 ---------------------------MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
                                      +ID  C       A   V  M ++G+TPS+ +Y
Sbjct: 400 GDMNKAILTIERMESFGLRPNSITFNSLIDKFCDMKEMDKAEEWVKKMAEKGVTPSVETY 459

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
           N+++ G  K     R +Q+LE+  + G  P+  +Y  L+  LC +  + +A  VL+ M+ 
Sbjct: 460 NTLIDGYGKLCTFDRCFQILEQMEEIGVKPNVVSYGSLINCLCKDGKILEAEIVLRDMIC 519

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
           +  +   ++ N+ +   C++    + L     M++++  P ++T N +I+G CK G++ E
Sbjct: 520 RGVLPNAQVYNMLIDGSCMVGKVKDALRFFDEMMRSEISPTLVTYNVLIDGLCKKGKLTE 579

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           A   L  + +    +PD +T+ ++I G  N G + + L  LY+ M   G  P + TY+ +
Sbjct: 580 AEDFLTQITSSGH-SPDVITYNSLISGYANAGNVSKCLG-LYETMKNLGIKPTVRTYHPL 637

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 417
           + G  +   +E  ++++N ML + ++ D   Y  +I    E     +A      ++    
Sbjct: 638 ISGCSK-EGIELVEKLYNEMLQMNLLPDRVVYNAMIHCYAEIGNTQKAYSLHQGMLDQGI 696

Query: 418 IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQ 477
             D   Y ++I G  R GK+      +  +    + P    Y++++ G C L     AY 
Sbjct: 697 HPDKMTYNSLILGHFREGKLSNIKDLVNNMKAKELAPKADTYDILVKGHCDLKDFSGAYV 756

Query: 478 ILREMRKNGLNPDA 491
             REM +N   P+A
Sbjct: 757 WYREMVENNFLPNA 770



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 119/491 (24%), Positives = 224/491 (45%), Gaps = 42/491 (8%)

Query: 16  LFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVL 75
           LF ++++ G   +   Y   I    +   + +  +  D MR  GV PN   Y+VL+ G  
Sbjct: 163 LFMEIENSGFRTDTFMYAKAIQAAVKLQNLKMGMEFLDSMRKRGVRPNVFIYNVLIGG-- 220

Query: 76  RTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKS 135
                                                 LCRE  + +  ++ ++M     
Sbjct: 221 --------------------------------------LCREKRIRDAEKMFDEMCNINL 242

Query: 136 VNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQ 195
           V        +ID  C+ G    A ++   M+++ + P+++++NS++ GLCK      A  
Sbjct: 243 VGSIVTYNTLIDGYCKVGELDAAFKMRERMKEKSVAPNIITFNSLLSGLCKMRKMKEARS 302

Query: 196 LLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALC 255
           LL+E    G++P  +TY +L +GL    D   A ++ +    K         +I L  LC
Sbjct: 303 LLKEMEVNGFMPDGYTYSILFDGLLRCDDGNGAMELYEQATEKGIRINNYTGSILLNGLC 362

Query: 256 LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA 315
                 +   +L    +     D +  NT +NG+C++G + +A+  +  M +     P++
Sbjct: 363 KQGKVEKAEEILKKFTENGLVADEVIYNTFVNGYCRIGDMNKAILTIERMESFGL-RPNS 421

Query: 316 VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN 375
           +TF ++I    ++  + +A   + + M ++G +P + TYN ++ G  +L   +   ++  
Sbjct: 422 ITFNSLIDKFCDMKEMDKAEEWVKK-MAEKGVTPSVETYNTLIDGYGKLCTFDRCFQILE 480

Query: 376 CMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG 435
            M  IGV  +  +Y  +I+ LC+  ++ EA+    D++    + +  VY  +I G C  G
Sbjct: 481 QMEEIGVKPNVVSYGSLINCLCKDGKILEAEIVLRDMICRGVLPNAQVYNMLIDGSCMVG 540

Query: 436 KIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWR 495
           K+ +A+ F  E++ S ++P +V YNV+IDG CK     EA   L ++  +G +PD +T+ 
Sbjct: 541 KVKDALRFFDEMMRSEISPTLVTYNVLIDGLCKKGKLTEAEDFLTQITSSGHSPDVITYN 600

Query: 496 ILDKLHGNRGN 506
            L   + N GN
Sbjct: 601 SLISGYANAGN 611



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 112/452 (24%), Positives = 211/452 (46%), Gaps = 8/452 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   +V +A ++       G V + V Y T ++GYCR G+M+ A    + M   G+
Sbjct: 358 LNGLCKQGKVEKAEEILKKFTENGLVADEVIYNTFVNGYCRIGDMNKAILTIERMESFGL 417

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PNS+T++ L+      +++++A     + W +   E+ ++ +   +  L+D   +    
Sbjct: 418 RPNSITFNSLIDKFCDMKEMDKA-----EEWVKKMAEKGVTPSVETYNTLIDGYGKLCTF 472

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +  F+I E M +        + G +I+ LC+ G+   A  V+  M  RG+ P+   YN +
Sbjct: 473 DRCFQILEQMEEIGVKPNVVSYGSLINCLCKDGKILEAEIVLRDMICRGVLPNAQVYNML 532

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G C  G    A +  +E ++    P+  TY VL++GLC +  L +A   L  + S   
Sbjct: 533 IDGSCMVGKVKDALRFFDEMMRSEISPTLVTYNVLIDGLCKKGKLTEAEDFLTQITSSGH 592

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                  N  +       N ++ L +   M     +P V T + +I+G  K G IE   K
Sbjct: 593 SPDVITYNSLISGYANAGNVSKCLGLYETMKNLGIKPTVRTYHPLISGCSKEG-IELVEK 651

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           + N+M+      PD V +  +I     +G  Q+A + L+Q M  +G  P  +TYN+++ G
Sbjct: 652 LYNEMLQMNL-LPDRVVYNAMIHCYAEIGNTQKAYS-LHQGMLDQGIHPDKMTYNSLILG 709

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
            FR  ++   K++ N M    +   + TY I++ G C+      A  ++ ++V  + + +
Sbjct: 710 HFREGKLSNIKDLVNNMKAKELAPKADTYDILVKGHCDLKDFSGAYVWYREMVENNFLPN 769

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGV 452
             +   +  GL + G++ E      E+   G+
Sbjct: 770 ASICNELTAGLEQEGRLQEVQVICSEMNVKGI 801


>gi|297723047|ref|NP_001173887.1| Os04g0351333 [Oryza sativa Japonica Group]
 gi|255675359|dbj|BAH92615.1| Os04g0351333 [Oryza sativa Japonica Group]
          Length = 740

 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 127/495 (25%), Positives = 239/495 (48%), Gaps = 12/495 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    + +A ++   M   G  PN ++Y +LIHGY  +G  + + +VF +M  CGV
Sbjct: 125 IDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGV 184

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNA--AFANLVDSLCREG 118
           +P     +  +  + +      A  +   +  +  + + +S +     +A   DS   + 
Sbjct: 185 IPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATATDSCLAD- 243

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
            V+ +F +   + +G + N+      +I++  R G    A  +   M+ +G+ P  V++ 
Sbjct: 244 -VHNIFNLM--LTKGIAPNKH-VFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFA 299

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
           +++  LC+ G    A       +  G  PSE  Y  L++G C   +L KA++++  M++K
Sbjct: 300 TVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNK 359

Query: 239 KDVDR--TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIE 296
            D+     +  +  +  LC      E  +++  M+QT  +P+V+T N+++ G+C +G +E
Sbjct: 360 -DIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNME 418

Query: 297 EALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
           EA  +L D +A     P+   + T++ G    GRI +AL + ++ M  +G  P  V Y+ 
Sbjct: 419 EAFALL-DAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTV-FRDMLHKGVKPTSVLYSI 476

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416
           +L GLF+ RR   AK++F+ M+  G      TY +V+ GLC +N  DEA    + +   +
Sbjct: 477 ILHGLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMN 536

Query: 417 NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAY 476
              D   +  +I  + + G+  EA      +   G+ PNI  Y+++I    K     EA 
Sbjct: 537 VKFDIITFNIVISAMFKVGRRQEAKELFDAISTYGLVPNIQTYSMMITNLIKEESYEEAD 596

Query: 477 QILREMRKNGLNPDA 491
            +   + K+G   D+
Sbjct: 597 NLFISVEKSGHASDS 611



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 116/491 (23%), Positives = 240/491 (48%), Gaps = 8/491 (1%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
            V +AH LF +M  +G +P ++   ++I   C+  EMD A  +  +M   G+ P+  TYS
Sbjct: 63  EVDKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYS 122

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
           +++ G+ +++ +++A     ++ E+M E      N+  + +L+      G  NE  R+ +
Sbjct: 123 LIIDGLCKSKAMDKAE----RVLEQMVEA-GTRPNSITYNSLIHGYSISGMWNESVRVFK 177

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKH- 187
            M     +     C   I +L + GR + A  +   M  +G  P ++SY++++HG     
Sbjct: 178 QMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATAT 237

Query: 188 GGCMR-AYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRI 246
             C+   + +    +  G  P++H + +L+        ++KA  + + M +K  +  T  
Sbjct: 238 DSCLADVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVT 297

Query: 247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV 306
               + +LC I    + L+    M+     P       +I G C  G + +A +++++M+
Sbjct: 298 FATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMM 357

Query: 307 AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 366
                 P    F++II  L   GR+ E  +++  +M Q G  P +VT+N+++ G   +  
Sbjct: 358 NKDIPPPGVKYFSSIINNLCKEGRVAEGKDIM-DMMVQTGQRPNVVTFNSLMEGYCLVGN 416

Query: 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAA 426
           +EEA  + + M  IG+  +   Y  ++DG C++ ++D+A   + D++       + +Y+ 
Sbjct: 417 MEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSI 476

Query: 427 MIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG 486
           ++ GL ++ +   A    +E+++SG T +I  Y VV+ G C+ +   EA  +L ++    
Sbjct: 477 ILHGLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMN 536

Query: 487 LNPDAVTWRIL 497
           +  D +T+ I+
Sbjct: 537 VKFDIITFNIV 547



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 112/481 (23%), Positives = 213/481 (44%), Gaps = 52/481 (10%)

Query: 23  RGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVER 82
           R   P + +Y  LI  Y R    D+   +   +   G+ P+  +YS L+ G ++  +V++
Sbjct: 8   RHSPPTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLGPDDFSYS-LIYGFVKDGEVDK 66

Query: 83  ANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFAC 142
           A+ L  ++ E                        +G + ++                  C
Sbjct: 67  AHCLFLEMME------------------------QGVLPKIL----------------IC 86

Query: 143 GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQ 202
             +I  LC+      A  +V  M   G+ P L +Y+ I+ GLCK     +A ++LE+ ++
Sbjct: 87  NSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVE 146

Query: 203 FGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTE 262
            G  P+  TY  L+ G        ++ +V + M S   +     CN ++ AL       E
Sbjct: 147 AGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNE 206

Query: 263 LLNVLVFMLQTQCQPDVITLNTVINGFCKMGR--IEEALKVLNDMVAGKFCAPDAVTFTT 320
              +   M+    +PD+I+ +T+++G+       + +   + N M+  K  AP+   F  
Sbjct: 207 AKCIFDSMVLKGPKPDIISYSTMLHGYATATDSCLADVHNIFNLMLT-KGIAPNKHVFNI 265

Query: 321 IIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI 380
           +I      G + +A+ L+++ M  +G  P  VT+  V+  L R+ R+++A   FN M+ I
Sbjct: 266 LINAYARCGMMDKAM-LIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDI 324

Query: 381 GVVADSTTYAIVIDGLCESNQLDEAKRFWDDI----VWPSNIHDNYVYAAMIKGLCRSGK 436
           GV      Y  +I G C   +L +AK    ++    + P  +     ++++I  LC+ G+
Sbjct: 325 GVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVK---YFSSIINNLCKEGR 381

Query: 437 IHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRI 496
           + E    +  +V +G  PN+V +N +++G C +    EA+ +L  M   G+ P+   +  
Sbjct: 382 VAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGT 441

Query: 497 L 497
           L
Sbjct: 442 L 442


>gi|226528493|ref|NP_001147073.1| ATP binding protein [Zea mays]
 gi|195607078|gb|ACG25369.1| ATP binding protein [Zea mays]
          Length = 655

 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 141/502 (28%), Positives = 234/502 (46%), Gaps = 7/502 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R+ +A  +  +M  RG  P    Y  ++   CR G    A +V +++   G   +
Sbjct: 132 LCARGRIADALAVLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALD 191

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
               ++++  +     V++A  L+  L      E D+   NA    L  +  R G V E+
Sbjct: 192 VGNCNLVLNAICDQGSVDKALHLLRDL-PSFGCEPDVVSYNAVLKGLCMAK-RWGCVQEL 249

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
               E+M +            +I  LCR+G       V+  M + G TP +  Y +I+ G
Sbjct: 250 M---EEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMAEHGCTPDIRMYATIIDG 306

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           +CK G    A+++L     +G  P+   Y  L++GLC     E+  ++L  M  K     
Sbjct: 307 ICKEGHLKVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLD 366

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               NI +   C       ++ +L  ML   C PDVIT  TVINGFCK G I+EA+ +L 
Sbjct: 367 DVTFNILVDFFCQNGLVDRVIELLEQMLVHGCMPDVITYTTVINGFCKEGLIDEAVMLLK 426

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            M A   C P+ +++T ++ GL +  R  +A +L+ Q M Q+G     +T+N ++  L +
Sbjct: 427 SMTACG-CKPNTISYTIVLKGLCSAERWVDAEDLMSQ-MIQQGCPLNPITFNTLINFLCK 484

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
              VE+A E+   ML  G   D  +Y+ VIDGL ++ + DEA    + +V      +  +
Sbjct: 485 KGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTII 544

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y+++   L R G+I++ +     + D+ +  + V YN VI   CK      A + L  M 
Sbjct: 545 YSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMV 604

Query: 484 KNGLNPDAVTWRILDKLHGNRG 505
            +G  P+  T+ IL +   + G
Sbjct: 605 SSGCVPNESTYTILIRGLASEG 626



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 119/451 (26%), Positives = 217/451 (48%), Gaps = 7/451 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ +C    V +A  L  D+ S G  P+VVSY  ++ G C         ++ +EM     
Sbjct: 199 LNAICDQGSVDKALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMAC 258

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +T++ L+  + R    ER + ++ ++      E   + +   +A ++D +C+EG++
Sbjct: 259 PPNIVTFNTLISYLCRNGLFERVHEVLAQM-----AEHGCTPDIRMYATIIDGICKEGHL 313

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                I   MP             ++  LC + R      ++  M  +      V++N +
Sbjct: 314 KVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNIL 373

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           V   C++G   R  +LLE+ +  G +P   TY  ++ G C E  +++A  +L+ M +   
Sbjct: 374 VDFFCQNGLVDRVIELLEQMLVHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGC 433

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
              T    I L+ LC  +   +  +++  M+Q  C  + IT NT+IN  CK G +E+A++
Sbjct: 434 KPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIE 493

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +L  M+    C+PD ++++T+I GL   G+  EAL LL  VM  +G SP  + Y+++   
Sbjct: 494 LLKQMLVNG-CSPDLISYSTVIDGLGKAGKTDEALELL-NVMVNKGMSPNTIIYSSIASA 551

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L R  R+ +  ++F+ +    + +D+  Y  VI  LC+  + + A  F   +V    + +
Sbjct: 552 LSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPN 611

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 451
              Y  +I+GL   G + EA   L EL   G
Sbjct: 612 ESTYTILIRGLASEGFVKEAQEMLTELCSKG 642



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 115/468 (24%), Positives = 222/468 (47%), Gaps = 20/468 (4%)

Query: 32  YTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLW 91
           Y  ++ GYCR G+++ A ++   +    V PN+ TY  +VR +     +  A  ++ ++ 
Sbjct: 93  YNAMVAGYCRAGQLESARRLAAAVP---VPPNAYTYFPVVRALCARGRIADALAVLDEMP 149

Query: 92  ERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCR 151
            R       +     +  ++++ CR G      R+ ED+       +   C  +++++C 
Sbjct: 150 RR-----GCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICD 204

Query: 152 SGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLC--KHGGCMRAYQLLEEGIQFGYLPSE 209
            G    A  ++  +   G  P +VSYN+++ GLC  K  GC++  +L+EE ++    P+ 
Sbjct: 205 QGSVDKALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQ--ELMEEMVRMACPPNI 262

Query: 210 HTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCL---IKNPTELLNV 266
            T+  L+  LC     E+  +VL  M         R+    +  +C    +K   E+LN 
Sbjct: 263 VTFNTLISYLCRNGLFERVHEVLAQMAEHGCTPDIRMYATIIDGICKEGHLKVAHEILN- 321

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
              M     +P+V+  NT++ G C   R EE  ++L +M   K C  D VTF  ++    
Sbjct: 322 --RMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMF-DKDCPLDDVTFNILVDFFC 378

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
             G +   + LL Q++   G  P ++TY  V+ G  +   ++EA  +   M   G   ++
Sbjct: 379 QNGLVDRVIELLEQML-VHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNT 437

Query: 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE 446
            +Y IV+ GLC + +  +A+     ++      +   +  +I  LC+ G + +A+  L +
Sbjct: 438 ISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQ 497

Query: 447 LVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
           ++ +G +P+++ Y+ VIDG  K     EA ++L  M   G++P+ + +
Sbjct: 498 MLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIY 545



 Score =  157 bits (398), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 106/399 (26%), Positives = 183/399 (45%), Gaps = 5/399 (1%)

Query: 107 FANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMR 166
           +  +V   CR G +    R+A  +P   +    F    ++ +LC  GR   A  V+  M 
Sbjct: 93  YNAMVAGYCRAGQLESARRLAAAVPVPPNAYTYFP---VVRALCARGRIADALAVLDEMP 149

Query: 167 KRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLE 226
           +RG  P    Y+ I+   C+ GG   A ++LE+    G         +++  +C +  ++
Sbjct: 150 RRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVD 209

Query: 227 KARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVI 286
           KA  +L+ + S          N  L+ LC+ K    +  ++  M++  C P+++T NT+I
Sbjct: 210 KALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLI 269

Query: 287 NGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
           +  C+ G  E   +VL  M A   C PD   + TII G+   G ++ A  +L + MP  G
Sbjct: 270 SYLCRNGLFERVHEVLAQM-AEHGCTPDIRMYATIIDGICKEGHLKVAHEILNR-MPSYG 327

Query: 347 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
             P +V YN +L+GL    R EE +E+   M       D  T+ I++D  C++  +D   
Sbjct: 328 LKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVI 387

Query: 407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466
              + ++    + D   Y  +I G C+ G I EAV  L  +   G  PN + Y +V+ G 
Sbjct: 388 ELLEQMLVHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGL 447

Query: 467 CKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
           C      +A  ++ +M + G   + +T+  L      +G
Sbjct: 448 CSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKG 486


>gi|242084770|ref|XP_002442810.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
 gi|241943503|gb|EES16648.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
          Length = 722

 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 140/497 (28%), Positives = 233/497 (46%), Gaps = 38/497 (7%)

Query: 19  DMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEM--RHCGVLPNSLTYSVLVRGVLR 76
           +M   G  P++V+Y TL+  + + G  D    +  EM  R  G LPN +T++V++ G+ R
Sbjct: 227 EMLQLGIEPSIVTYNTLLDSFLKEGRNDKVAMLLKEMETRGSGCLPNDVTHNVVITGLAR 286

Query: 77  TRDVERANVLMFKLWERMKEEEDLSVNNAAFA--NLVDSLCREGYVNEVFRIAEDMPQGK 134
             D+E A          M E   LS   ++F    L+  L  +G+V +   +  +M    
Sbjct: 287 KGDLEEA--------AEMVEGMRLSKKASSFTYNPLITGLLAKGFVKKADDLQLEMENEG 338

Query: 135 SVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAY 194
            +        MI  L +SG+   A      MR  GL P +++YNS+++G CK G    A 
Sbjct: 339 IMPTVVTYNAMIHGLLQSGQVEAAQVKFVEMRAMGLQPDVITYNSLLNGYCKAGSLKEAL 398

Query: 195 QLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRA- 253
            L  +    G  P+  TY +L++G C   DLE+AR++ + M+ +  +       I ++  
Sbjct: 399 LLFGDLRHAGLAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVCTYTILMKGS 458

Query: 254 --LCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC 311
              C +    E  +    ML    QPD    NT I     +G I +A + L +++  +  
Sbjct: 459 HNACSLAMAREFFDE---MLSKGLQPDCFAYNTRIRAELTLGAIAKAFR-LREVMMLEGI 514

Query: 312 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL-----RGLFRLRR 366
           + D VT+  +I GL   G + +A +L  + M   G  P  +TY  ++     RGL R   
Sbjct: 515 SSDTVTYNILIDGLCKTGNLNDAKDLQMK-MVHNGLQPDCITYTCLIHAHCERGLLR--- 570

Query: 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA----KRFWDDIVWPSNIHDNY 422
             EA++ F  M+  G+   + TY + I   C    L  A    ++  ++ V P+ I    
Sbjct: 571 --EARKFFKDMISDGLAPSAVTYTVFIHAYCRRGNLYSAYGWFRKMLEEGVEPNEI---- 624

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
            Y  +I  LCR+G+   A    +E+++ G+ PN   Y ++IDG CK     +A +   EM
Sbjct: 625 TYNVLIHALCRTGRTQLAYRHFHEMLERGLVPNKYTYTLLIDGNCKEGNWEDAMRFYFEM 684

Query: 483 RKNGLNPDAVTWRILDK 499
            +NG++PD +T + L K
Sbjct: 685 HQNGIHPDYLTHKALFK 701



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 97/355 (27%), Positives = 163/355 (45%), Gaps = 11/355 (3%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           +V  A   F +M++ G  P+V++Y +L++GYC+ G +  A  +F ++RH G+ P  LTY+
Sbjct: 358 QVEAAQVKFVEMRAMGLQPDVITYNSLLNGYCKAGSLKEALLLFGDLRHAGLAPTVLTYN 417

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLS--VNNAAFANLVDSLCREGYVNEVFRI 126
           +L+ G  R  D+E A     +L E M E+  L              + C      E F  
Sbjct: 418 ILIDGYCRLGDLEEAR----RLKEEMVEQGCLPDVCTYTILMKGSHNACSLAMAREFF-- 471

Query: 127 AEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK 186
            ++M       + FA    I +    G    A R+  VM   G++   V+YN ++ GLCK
Sbjct: 472 -DEMLSKGLQPDCFAYNTRIRAELTLGAIAKAFRLREVMMLEGISSDTVTYNILIDGLCK 530

Query: 187 HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRI 246
            G    A  L  + +  G  P   TY  L+   C    L +ARK  + M+S         
Sbjct: 531 TGNLNDAKDLQMKMVHNGLQPDCITYTCLIHAHCERGLLREARKFFKDMISDGLAPSAVT 590

Query: 247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV 306
             +++ A C   N          ML+   +P+ IT N +I+  C+ GR + A +  ++M+
Sbjct: 591 YTVFIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRTGRTQLAYRHFHEML 650

Query: 307 AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
             +   P+  T+T +I G    G  ++A+   ++ M Q G  P  +T+ A+ +G 
Sbjct: 651 E-RGLVPNKYTYTLLIDGNCKEGNWEDAMRFYFE-MHQNGIHPDYLTHKALFKGF 703



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 50/143 (34%), Positives = 69/143 (48%), Gaps = 14/143 (9%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           EA K F DM S G  P+ V+YT  IH YCR G +  AY  F +M   GV PN +TY+VL+
Sbjct: 571 EARKFFKDMISDGLAPSAVTYTVFIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLI 630

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP 131
             + RT   + A     ++ ER      L  N   +  L+D  C+EG   +  R   +M 
Sbjct: 631 HALCRTGRTQLAYRHFHEMLER-----GLVPNKYTYTLLIDGNCKEGNWEDAMRFYFEMH 685

Query: 132 QG---------KSVNEEFACGHM 145
           Q          K++ + F  GHM
Sbjct: 686 QNGIHPDYLTHKALFKGFDEGHM 708


>gi|363543233|ref|NP_001241831.1| uncharacterized protein LOC100857030 [Zea mays]
 gi|224033903|gb|ACN36027.1| unknown [Zea mays]
          Length = 655

 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 143/515 (27%), Positives = 232/515 (45%), Gaps = 44/515 (8%)

Query: 27  PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVL 86
           PN  +Y  ++   C  G +  A  V DEM   G  P    Y V++    R      A  +
Sbjct: 120 PNAYTYFPVVRALCARGRIADALAVLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAVRV 179

Query: 87  MFKLWERMKEEEDLSVNNAAFANLV-DSLCREGYVNEVFRIAEDMP-------------- 131
           +  L  R      L V N    NLV +++C +G V+E   +  D+P              
Sbjct: 180 LEDLHARGCA---LDVGNC---NLVLNAICDQGSVDEALHLLRDLPSFGCEPDVVSYNAV 233

Query: 132 -QGKSVNEEFAC--------------------GHMIDSLCRSGRNHGASRVVYVMRKRGL 170
            +G  + + + C                      +I  LCR+G       V+  M + G 
Sbjct: 234 LKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGC 293

Query: 171 TPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARK 230
           TP +  Y +I+ G+CK G    A+++L     +G  P+   Y  L++GLC     E+  +
Sbjct: 294 TPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEE 353

Query: 231 VLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFC 290
           +L  M  K         NI +   C       ++ +L  ML+  C PDVIT  TVINGFC
Sbjct: 354 LLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLERGCMPDVITYTTVINGFC 413

Query: 291 KMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG 350
           K G I+EA+ +L  M A   C P+ +++T ++ GL +  R  +A +L+ Q M Q+G    
Sbjct: 414 KEGLIDEAVMLLKSMTACG-CKPNTISYTIVLKGLCSAERWVDAEDLMSQ-MIQQGCPLN 471

Query: 351 IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD 410
            +T+N ++  L +   VE+A E+   ML  G   D  +Y+ VIDGL ++ + DEA    +
Sbjct: 472 PITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLN 531

Query: 411 DIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLS 470
            +V      +  +Y+++   L R G+I++ +     + D+ +  + V YN VI   CK  
Sbjct: 532 VMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRG 591

Query: 471 MKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
               A + L  M  +G  P+  T+ IL +   + G
Sbjct: 592 ETERAIEFLAYMVSSGCVPNESTYTILIRGLASEG 626



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 120/452 (26%), Positives = 218/452 (48%), Gaps = 7/452 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ +C    V EA  L  D+ S G  P+VVSY  ++ G C         ++ +EM     
Sbjct: 199 LNAICDQGSVDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMAC 258

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +T++ L+  + R    ER + ++ ++ E        + +   +A ++D +C+EG++
Sbjct: 259 PPNIVTFNTLISYLCRNGLFERVHEVLAQMVEH-----GCTPDIRMYATIIDGICKEGHL 313

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                I   MP             ++  LC + R      ++  M  +      V++N +
Sbjct: 314 EVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNIL 373

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           V   C++G   R  +LLE+ ++ G +P   TY  ++ G C E  +++A  +L+ M +   
Sbjct: 374 VDFFCQNGLVDRVIELLEQMLERGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGC 433

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
              T    I L+ LC  +   +  +++  M+Q  C  + IT NT+IN  CK G +E+A++
Sbjct: 434 KPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIE 493

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +L  M+    C+PD ++++T+I GL   G+  EAL LL  VM  +G SP  + Y+++   
Sbjct: 494 LLKQMLVNG-CSPDLISYSTVIDGLGKAGKTDEALELL-NVMVNKGMSPNTIIYSSIASA 551

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L R  R+ +  ++F+ +    + +D+  Y  VI  LC+  + + A  F   +V    + +
Sbjct: 552 LSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPN 611

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGV 452
              Y  +I+GL   G + EA   L EL   G 
Sbjct: 612 ESTYTILIRGLASEGFVKEAQEMLTELCSKGA 643



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 113/465 (24%), Positives = 222/465 (47%), Gaps = 14/465 (3%)

Query: 32  YTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLW 91
           Y  ++ GYCR G+++ A ++   +    V PN+ TY  +VR +     +  A  ++ ++ 
Sbjct: 93  YNAMVAGYCRAGQLESARRLAAAVP---VPPNAYTYFPVVRALCARGRIADALAVLDEMP 149

Query: 92  ERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCR 151
            R       +     +  ++++ CR G      R+ ED+       +   C  +++++C 
Sbjct: 150 RR-----GCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICD 204

Query: 152 SGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLC--KHGGCMRAYQLLEEGIQFGYLPSE 209
            G    A  ++  +   G  P +VSYN+++ GLC  K  GC++  +L+EE ++    P+ 
Sbjct: 205 QGSVDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQ--ELMEEMVRMACPPNI 262

Query: 210 HTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVF 269
            T+  L+  LC     E+  +VL  M+        R+    +  +C   +      +L  
Sbjct: 263 VTFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNR 322

Query: 270 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG 329
           M     +P+V+  NT++ G C   R EE  ++L +M   K C  D VTF  ++      G
Sbjct: 323 MPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMF-DKDCPLDDVTFNILVDFFCQNG 381

Query: 330 RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTY 389
            +   + LL Q++ +RG  P ++TY  V+ G  +   ++EA  +   M   G   ++ +Y
Sbjct: 382 LVDRVIELLEQML-ERGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISY 440

Query: 390 AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449
            IV+ GLC + +  +A+     ++      +   +  +I  LC+ G + +A+  L +++ 
Sbjct: 441 TIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLV 500

Query: 450 SGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
           +G +P+++ Y+ VIDG  K     EA ++L  M   G++P+ + +
Sbjct: 501 NGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIY 545



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 105/399 (26%), Positives = 183/399 (45%), Gaps = 5/399 (1%)

Query: 107 FANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMR 166
           +  +V   CR G +    R+A  +P   +    F    ++ +LC  GR   A  V+  M 
Sbjct: 93  YNAMVAGYCRAGQLESARRLAAAVPVPPNAYTYFP---VVRALCARGRIADALAVLDEMP 149

Query: 167 KRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLE 226
           +RG  P    Y+ I+   C+ GG   A ++LE+    G         +++  +C +  ++
Sbjct: 150 RRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVD 209

Query: 227 KARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVI 286
           +A  +L+ + S          N  L+ LC+ K    +  ++  M++  C P+++T NT+I
Sbjct: 210 EALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLI 269

Query: 287 NGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
           +  C+ G  E   +VL  MV    C PD   + TII G+   G ++ A  +L + MP  G
Sbjct: 270 SYLCRNGLFERVHEVLAQMVE-HGCTPDIRMYATIIDGICKEGHLEVAHEILNR-MPSYG 327

Query: 347 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
             P +V YN +L+GL    R EE +E+   M       D  T+ I++D  C++  +D   
Sbjct: 328 LKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVI 387

Query: 407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466
              + ++    + D   Y  +I G C+ G I EAV  L  +   G  PN + Y +V+ G 
Sbjct: 388 ELLEQMLERGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGL 447

Query: 467 CKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
           C      +A  ++ +M + G   + +T+  L      +G
Sbjct: 448 CSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKG 486


>gi|356528166|ref|XP_003532676.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Glycine max]
          Length = 852

 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 133/489 (27%), Positives = 242/489 (49%), Gaps = 45/489 (9%)

Query: 7   LSRVGE---AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           L+R G+   A  LF +MK++G  P++V+Y +LI GY + G +  A  VF+EM+  G  P+
Sbjct: 261 LAREGDLEAARSLFEEMKAKGLRPDIVTYNSLIDGYGKVGMLTGAVSVFEEMKDAGCEPD 320

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY+ L+    +   + +A    F+    MK+   L  N   ++ L+D+ C+ G + E 
Sbjct: 321 VITYNSLINCFCKFERIPQA----FEYLHGMKQR-GLQPNVVTYSTLIDAFCKAGMLLEA 375

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            +   DM +      EF    +ID+ C+ G  + A ++   M++ G+  ++V+Y +++ G
Sbjct: 376 NKFFVDMIRVGLQPNEFTYTSLIDANCKIGDLNEAFKLESEMQQAGVNLNIVTYTALLDG 435

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LC+ G    A +L    ++ G+  ++  Y  L  G      +EKA  +L+ M +KK++  
Sbjct: 436 LCEDGRMREAEELFGALLKAGWTLNQQIYTSLFHGYIKAKMMEKAMDILEEM-NKKNL-- 492

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                                           +PD++   T I G C+   IE+++ V+ 
Sbjct: 493 --------------------------------KPDLLLYGTKIWGLCRQNEIEDSMAVIR 520

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           +M+     A ++  +TT+I     VG+  EA+NLL Q M   G    +VTY  ++ GL +
Sbjct: 521 EMMDCGLTA-NSYIYTTLIDAYFKVGKTTEAVNLL-QEMQDLGIKITVVTYGVLIDGLCK 578

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
           +  V++A   F+ M   G+  +   Y  +IDGLC+++ L+EAK  +++++      D  V
Sbjct: 579 IGLVQQAVRYFDHMTRNGLQPNIMIYTALIDGLCKNDCLEEAKNLFNEMLDKGISPDKLV 638

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y ++I G  + G   EA+     +V+ G+  ++  Y  +I G  +    + A  +L EM 
Sbjct: 639 YTSLIDGNMKHGNPGEALSLRNRMVEIGMELDLCAYTSLIWGFSRYGQVQLAKSLLDEML 698

Query: 484 KNGLNPDAV 492
           + G+ PD V
Sbjct: 699 RKGIIPDQV 707



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 122/511 (23%), Positives = 231/511 (45%), Gaps = 45/511 (8%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           L  L  + EA + F+ M     +P V S   L+H   ++ +  +A   F +M   G+ P+
Sbjct: 191 LVDLGMLEEARQCFWKMNKFRVLPKVRSCNELLHRLSKSSKGGLALSFFKDMVVAGLSPS 250

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             TY++++  + R  D+E A      L+E MK +  L  +   + +L+D   + G +   
Sbjct: 251 VFTYNMVIGCLAREGDLEAAR----SLFEEMKAK-GLRPDIVTYNSLIDGYGKVGMLTGA 305

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             + E+M       +      +I+  C+  R   A   ++ M++RGL P++V+Y++++  
Sbjct: 306 VSVFEEMKDAGCEPDVITYNSLINCFCKFERIPQAFEYLHGMKQRGLQPNVVTYSTLIDA 365

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK G  + A +   + I+ G  P+E TY  L++  C   DL +A     F L  +    
Sbjct: 366 FCKAGMLLEANKFFVDMIRVGLQPNEFTYTSLIDANCKIGDLNEA-----FKLESE---- 416

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                                     M Q     +++T   +++G C+ GR+ EA ++  
Sbjct: 417 --------------------------MQQAGVNLNIVTYTALLDGLCEDGRMREAEELFG 450

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            ++   +     + +T++  G +    +++A+++L + M ++   P ++ Y   + GL R
Sbjct: 451 ALLKAGWTLNQQI-YTSLFHGYIKAKMMEKAMDILEE-MNKKNLKPDLLLYGTKIWGLCR 508

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
              +E++  V   M+  G+ A+S  Y  +ID   +  +  EA     ++           
Sbjct: 509 QNEIEDSMAVIREMMDCGLTANSYIYTTLIDAYFKVGKTTEAVNLLQEMQDLGIKITVVT 568

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y  +I GLC+ G + +AV +   +  +G+ PNI+ Y  +IDG CK     EA  +  EM 
Sbjct: 569 YGVLIDGLCKIGLVQQAVRYFDHMTRNGLQPNIMIYTALIDGLCKNDCLEEAKNLFNEML 628

Query: 484 KNGLNPDAVTWRIL---DKLHGNRGNDFGLR 511
             G++PD + +  L   +  HGN G    LR
Sbjct: 629 DKGISPDKLVYTSLIDGNMKHGNPGEALSLR 659



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 108/391 (27%), Positives = 180/391 (46%), Gaps = 2/391 (0%)

Query: 107 FANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMR 166
           F  L + L   G + E  +    M + + + +  +C  ++  L +S +   A      M 
Sbjct: 184 FDTLFNVLVDLGMLEEARQCFWKMNKFRVLPKVRSCNELLHRLSKSSKGGLALSFFKDMV 243

Query: 167 KRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLE 226
             GL+PS+ +YN ++  L + G    A  L EE    G  P   TY  L++G      L 
Sbjct: 244 VAGLSPSVFTYNMVIGCLAREGDLEAARSLFEEMKAKGLRPDIVTYNSLIDGYGKVGMLT 303

Query: 227 KARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVI 286
            A  V + M            N  +   C  +   +    L  M Q   QP+V+T +T+I
Sbjct: 304 GAVSVFEEMKDAGCEPDVITYNSLINCFCKFERIPQAFEYLHGMKQRGLQPNVVTYSTLI 363

Query: 287 NGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
           + FCK G + EA K   DM+      P+  T+T++I     +G + EA  L  + M Q G
Sbjct: 364 DAFCKAGMLLEANKFFVDMIRVGL-QPNEFTYTSLIDANCKIGDLNEAFKLESE-MQQAG 421

Query: 347 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
            +  IVTY A+L GL    R+ EA+E+F  +L  G   +   Y  +  G  ++  +++A 
Sbjct: 422 VNLNIVTYTALLDGLCEDGRMREAEELFGALLKAGWTLNQQIYTSLFHGYIKAKMMEKAM 481

Query: 407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466
              +++   +   D  +Y   I GLCR  +I +++  + E++D G+T N   Y  +ID  
Sbjct: 482 DILEEMNKKNLKPDLLLYGTKIWGLCRQNEIEDSMAVIREMMDCGLTANSYIYTTLIDAY 541

Query: 467 CKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            K+    EA  +L+EM+  G+    VT+ +L
Sbjct: 542 FKVGKTTEAVNLLQEMQDLGIKITVVTYGVL 572



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 103/411 (25%), Positives = 190/411 (46%), Gaps = 9/411 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C   R+ +A +    MK RG  PNVV+Y+TLI  +C+ G +  A K F +M   G+ PN
Sbjct: 331 FCKFERIPQAFEYLHGMKQRGLQPNVVTYSTLIDAFCKAGMLLEANKFFVDMIRVGLQPN 390

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             TY+ L+    +  D+  A    FKL   M ++  +++N   +  L+D LC +G + E 
Sbjct: 391 EFTYTSLIDANCKIGDLNEA----FKLESEM-QQAGVNLNIVTYTALLDGLCEDGRMREA 445

Query: 124 FRI-AEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
             +    +  G ++N++     +     ++     A  ++  M K+ L P L+ Y + + 
Sbjct: 446 EELFGALLKAGWTLNQQIYTS-LFHGYIKAKMMEKAMDILEEMNKKNLKPDLLLYGTKIW 504

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           GLC+      +  ++ E +  G   + + Y  L++         +A  +LQ M       
Sbjct: 505 GLCRQNEIEDSMAVIREMMDCGLTANSYIYTTLIDAYFKVGKTTEAVNLLQEMQDLGIKI 564

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
                 + +  LC I    + +     M +   QP+++    +I+G CK   +EEA  + 
Sbjct: 565 TVVTYGVLIDGLCKIGLVQQAVRYFDHMTRNGLQPNIMIYTALIDGLCKNDCLEEAKNLF 624

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
           N+M+  K  +PD + +T++I G +  G   EAL+L  + M + G    +  Y +++ G  
Sbjct: 625 NEML-DKGISPDKLVYTSLIDGNMKHGNPGEALSLRNR-MVEIGMELDLCAYTSLIWGFS 682

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413
           R  +V+ AK + + ML  G++ D      ++    E   ++EA    DD+ 
Sbjct: 683 RYGQVQLAKSLLDEMLRKGIIPDQVLCICLLRKYYELGDINEALALHDDMA 733


>gi|222628664|gb|EEE60796.1| hypothetical protein OsJ_14385 [Oryza sativa Japonica Group]
          Length = 808

 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 126/494 (25%), Positives = 237/494 (47%), Gaps = 10/494 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    + +A ++   M   G  PN ++Y +LIHGY  +G  + + +VF +M  CGV
Sbjct: 211 IDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGV 270

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNA--AFANLVDSLCREG 118
           +P     +  +  + +      A  +   +  +  + + +S +     +A   DS   + 
Sbjct: 271 IPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATATDSCLAD- 329

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
            V+ +F +   + +G + N+      +I++  R G    A  +   M+ +G+ P  V++ 
Sbjct: 330 -VHNIFNLM--LTKGIAPNKH-VFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFA 385

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
           +++  LC+ G    A       +  G  PSE  Y  L++G C   +L KA++++  M++K
Sbjct: 386 TVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNK 445

Query: 239 K-DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
                  +  +  +  LC      E  +++  M+QT  +P+V+T N+++ G+C +G +EE
Sbjct: 446 DIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEE 505

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           A  +L D +A     P+   + T++ G    GRI +AL + ++ M  +G  P  V Y+ +
Sbjct: 506 AFALL-DAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTV-FRDMLHKGVKPTSVLYSII 563

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 417
           L GLF+ RR   AK++F+ M+  G      TY +V+ GLC +N  DEA    + +   + 
Sbjct: 564 LHGLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNV 623

Query: 418 IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQ 477
             D   +  +I  + + G+  EA      +   G+ PNI  Y+++I    K     EA  
Sbjct: 624 KFDIITFNIVISAMFKVGRRQEAKELFDAISTYGLVPNIQTYSMMITNLIKEESYEEADN 683

Query: 478 ILREMRKNGLNPDA 491
           +   + K+G   D+
Sbjct: 684 LFISVEKSGHASDS 697



 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 116/491 (23%), Positives = 240/491 (48%), Gaps = 8/491 (1%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
            V +AH LF +M  +G +P ++   ++I   C+  EMD A  +  +M   G+ P+  TYS
Sbjct: 149 EVDKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYS 208

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
           +++ G+ +++ +++A     ++ E+M E      N+  + +L+      G  NE  R+ +
Sbjct: 209 LIIDGLCKSKAMDKAE----RVLEQMVEA-GTRPNSITYNSLIHGYSISGMWNESVRVFK 263

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKH- 187
            M     +     C   I +L + GR + A  +   M  +G  P ++SY++++HG     
Sbjct: 264 QMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATAT 323

Query: 188 GGCMR-AYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRI 246
             C+   + +    +  G  P++H + +L+        ++KA  + + M +K  +  T  
Sbjct: 324 DSCLADVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVT 383

Query: 247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV 306
               + +LC I    + L+    M+     P       +I G C  G + +A +++++M+
Sbjct: 384 FATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMM 443

Query: 307 AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 366
                 P    F++II  L   GR+ E  +++  +M Q G  P +VT+N+++ G   +  
Sbjct: 444 NKDIPPPGVKYFSSIINNLCKEGRVAEGKDIM-DMMVQTGQRPNVVTFNSLMEGYCLVGN 502

Query: 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAA 426
           +EEA  + + M  IG+  +   Y  ++DG C++ ++D+A   + D++       + +Y+ 
Sbjct: 503 MEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSI 562

Query: 427 MIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG 486
           ++ GL ++ +   A    +E+++SG T +I  Y VV+ G C+ +   EA  +L ++    
Sbjct: 563 ILHGLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMN 622

Query: 487 LNPDAVTWRIL 497
           +  D +T+ I+
Sbjct: 623 VKFDIITFNIV 633



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 112/481 (23%), Positives = 213/481 (44%), Gaps = 52/481 (10%)

Query: 23  RGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVER 82
           R   P + +Y  LI  Y R    D+   +   +   G+ P+  +YS L+ G ++  +V++
Sbjct: 94  RHSPPTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLGPDDFSYS-LIYGFVKDGEVDK 152

Query: 83  ANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFAC 142
           A+ L  ++ E                        +G + ++                  C
Sbjct: 153 AHCLFLEMME------------------------QGVLPKIL----------------IC 172

Query: 143 GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQ 202
             +I  LC+      A  +V  M   G+ P L +Y+ I+ GLCK     +A ++LE+ ++
Sbjct: 173 NSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVE 232

Query: 203 FGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTE 262
            G  P+  TY  L+ G        ++ +V + M S   +     CN ++ AL       E
Sbjct: 233 AGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNE 292

Query: 263 LLNVLVFMLQTQCQPDVITLNTVINGFCKMGR--IEEALKVLNDMVAGKFCAPDAVTFTT 320
              +   M+    +PD+I+ +T+++G+       + +   + N M+  K  AP+   F  
Sbjct: 293 AKCIFDSMVLKGPKPDIISYSTMLHGYATATDSCLADVHNIFNLMLT-KGIAPNKHVFNI 351

Query: 321 IIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI 380
           +I      G + +A+ L+++ M  +G  P  VT+  V+  L R+ R+++A   FN M+ I
Sbjct: 352 LINAYARCGMMDKAM-LIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDI 410

Query: 381 GVVADSTTYAIVIDGLCESNQLDEAKRFWDDI----VWPSNIHDNYVYAAMIKGLCRSGK 436
           GV      Y  +I G C   +L +AK    ++    + P  +     ++++I  LC+ G+
Sbjct: 411 GVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVK---YFSSIINNLCKEGR 467

Query: 437 IHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRI 496
           + E    +  +V +G  PN+V +N +++G C +    EA+ +L  M   G+ P+   +  
Sbjct: 468 VAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGT 527

Query: 497 L 497
           L
Sbjct: 528 L 528


>gi|222623943|gb|EEE58075.1| hypothetical protein OsJ_08937 [Oryza sativa Japonica Group]
          Length = 933

 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 136/539 (25%), Positives = 246/539 (45%), Gaps = 44/539 (8%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R  EA+ LF +M   G  PN V+Y TLI    + G       +  EM   GV+ +
Sbjct: 284 LCRDGRFSEAYALFREMDKVGAAPNHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMD 343

Query: 64  SLTYSVLVRGVLRT-RDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
            +TY+ L+  + +  +  E  + L F L       ++LS N   +  L+D+LC+   V+E
Sbjct: 344 LVTYTALMDWLGKQGKTDEVKDTLRFAL------SDNLSPNGVTYTVLIDALCKAHNVDE 397

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY----- 177
             ++  +M +            +I+   + G    A+    +M++RG+ P++V+Y     
Sbjct: 398 AEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLID 457

Query: 178 ------------------------------NSIVHGLCKHGGCMRAYQLLEEGIQFGYLP 207
                                         +S+V+GL ++G    A  L ++    G   
Sbjct: 458 GFFKFQGQDAALEVYHDMLCEGVKVNKFIVDSLVNGLRQNGKIEEAMALFKDASGSGLSL 517

Query: 208 SEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVL 267
               Y  L++GL    D+  A K  Q ++ +  +    + N+++  LC++    E  + L
Sbjct: 518 DHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPDAVVYNVFINCLCMLGKFKEAKSFL 577

Query: 268 VFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLN 327
             M     +PD  T NT+I   C+ G   +ALK+L++M       P+ +T+ T++ GL  
Sbjct: 578 TEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKLLHEMKMSSI-KPNLITYNTLVAGLFG 636

Query: 328 VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADST 387
            G +++A  LL + M   G+SP  +T+  VL+   + RR++   ++   M+  G+ AD T
Sbjct: 637 TGAVEKAKYLLNE-MVSAGFSPSSLTHRRVLQACSQSRRLDVILDIHEWMMNAGLHADIT 695

Query: 388 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYEL 447
            Y  ++  LC      +A    ++++      D   + A+I G C+S  +  A     ++
Sbjct: 696 VYNTLLQVLCYHGMTRKATVVLEEMLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQM 755

Query: 448 VDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           +   ++PNI  +N ++ G   +    EA  +L EM K+GL P+ +T+ IL   HG + N
Sbjct: 756 LHQNISPNIATFNTLLGGLESVGRIGEAGTVLIEMEKSGLEPNNLTYDILATGHGKQSN 814



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 131/527 (24%), Positives = 238/527 (45%), Gaps = 32/527 (6%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    V EA ++  +M+ +   PNVV+++++I+G+ + G +D A +    M+  G+
Sbjct: 386 IDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKATEYKRMMKERGI 445

Query: 61  LPNSLTYSVLVRGVLRTRDVERA-------------------NVLMFKLWERMKEEE--- 98
            PN +TY  L+ G  + +  + A                   + L+  L +  K EE   
Sbjct: 446 NPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEGVKVNKFIVDSLVNGLRQNGKIEEAMA 505

Query: 99  --------DLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC 150
                    LS+++  +  L+D L + G +   F+  +++     + +       I+ LC
Sbjct: 506 LFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPDAVVYNVFINCLC 565

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
             G+   A   +  MR  GL P   +YN+++   C+ G   +A +LL E       P+  
Sbjct: 566 MLGKFKEAKSFLTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKLLHEMKMSSIKPNLI 625

Query: 211 TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM 270
           TY  LV GL G   +EKA+ +L  M+S      +      L+A    +    +L++  +M
Sbjct: 626 TYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSLTHRRVLQACSQSRRLDVILDIHEWM 685

Query: 271 LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR 330
           +      D+   NT++   C  G   +A  VL +M+ G   APD +TF  +I G      
Sbjct: 686 MNAGLHADITVYNTLLQVLCYHGMTRKATVVLEEML-GSGIAPDTITFNALILGHCKSSH 744

Query: 331 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYA 390
           +  A     Q++ Q   SP I T+N +L GL  + R+ EA  V   M   G+  ++ TY 
Sbjct: 745 LDNAFATYAQMLHQN-ISPNIATFNTLLGGLESVGRIGEAGTVLIEMEKSGLEPNNLTYD 803

Query: 391 IVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 450
           I+  G  + +   EA R + ++V    +     Y A+I    ++G + +A     ++   
Sbjct: 804 ILATGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYNALISDFTKAGMMTQAKELFKDMQKR 863

Query: 451 GVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           GV P    Y++++ G  ++    E  + L++M++ G +P   T   +
Sbjct: 864 GVHPTSCTYDILVSGWSRIRNGTEVKKCLKDMKEKGFSPSKGTLSFI 910



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 135/507 (26%), Positives = 223/507 (43%), Gaps = 50/507 (9%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHV-PNVVSYTTL----IHGYCRTGEMDVAYKVFDEMRHC 58
           L GL R G+           G + P + S  TL    I G+   G+   A  V D M   
Sbjct: 142 LAGLCRNGQVDAAAALADRAGGITPWMSSAGTLSLLDIAGF---GDTPAALSVADRMTAQ 198

Query: 59  GVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREG 118
           G+  + + Y+ LV G  R   V+ A  ++      M +E  +  N A +   +   CR  
Sbjct: 199 GLPMDVVGYNTLVAGFCRAGQVDAARGVL-----DMMKEAGVDPNVATYTPFIVYYCRTK 253

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
            V E F + E M +   + +      ++  LCR GR   A  +   M K G  P+ V+Y 
Sbjct: 254 GVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVGAAPNHVTYC 313

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
           +++  L K G       LL E +  G +    TY  L++ L  +   ++ +  L+F LS 
Sbjct: 314 TLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDEVKDTLRFALSD 373

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
                                                 P+ +T   +I+  CK   ++EA
Sbjct: 374 -----------------------------------NLSPNGVTYTVLIDALCKAHNVDEA 398

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
            +VL +M   K  +P+ VTF+++I G +  G + +A     ++M +RG +P +VTY  ++
Sbjct: 399 EQVLLEM-EEKSISPNVVTFSSVINGFVKRGLLDKATEY-KRMMKERGINPNVVTYGTLI 456

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
            G F+ +  + A EV++ ML  GV  +      +++GL ++ +++EA   + D       
Sbjct: 457 DGFFKFQGQDAALEVYHDMLCEGVKVNKFIVDSLVNGLRQNGKIEEAMALFKDASGSGLS 516

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI 478
            D+  Y  +I GL ++G +  A  F  EL+D  + P+ V YNV I+  C L   +EA   
Sbjct: 517 LDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPDAVVYNVFINCLCMLGKFKEAKSF 576

Query: 479 LREMRKNGLNPDAVTWRILDKLHGNRG 505
           L EMR  GL PD  T+  +   H  +G
Sbjct: 577 LTEMRNMGLKPDQSTYNTMIVSHCRKG 603



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 75/337 (22%), Positives = 137/337 (40%), Gaps = 42/337 (12%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C      +A KL  +MK     PN+++Y TL+ G   TG ++ A  + +EM   G  P+S
Sbjct: 600 CRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSS 659

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           LT+  +++   ++R ++    ++  + E M     L  +   +  L+  LC  G   +  
Sbjct: 660 LTHRRVLQACSQSRRLD----VILDIHEWMMNA-GLHADITVYNTLLQVLCYHGMTRKAT 714

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRS-------------------------------- 152
            + E+M       +      +I   C+S                                
Sbjct: 715 VVLEEMLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLGGL 774

Query: 153 ---GRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSE 209
              GR   A  V+  M K GL P+ ++Y+ +  G  K    + A +L  E +  G++P  
Sbjct: 775 ESVGRIGEAGTVLIEMEKSGLEPNNLTYDILATGHGKQSNKVEAMRLYCEMVGKGFVPKV 834

Query: 210 HTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC-NIYLRALCLIKNPTELLNVLV 268
            TY  L+        + +A+++ + M  K+ V  T    +I +     I+N TE+   L 
Sbjct: 835 STYNALISDFTKAGMMTQAKELFKDM-QKRGVHPTSCTYDILVSGWSRIRNGTEVKKCLK 893

Query: 269 FMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM 305
            M +    P   TL+ +   F K G   +A ++L ++
Sbjct: 894 DMKEKGFSPSKGTLSFICRAFSKPGMTWQAQRLLKNL 930


>gi|48716316|dbj|BAD22929.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|48717088|dbj|BAD22861.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
          Length = 933

 Score =  188 bits (478), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 136/539 (25%), Positives = 246/539 (45%), Gaps = 44/539 (8%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R  EA+ LF +M   G  PN V+Y TLI    + G       +  EM   GV+ +
Sbjct: 284 LCRDGRFSEAYALFREMDKVGAAPNHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMD 343

Query: 64  SLTYSVLVRGVLRT-RDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
            +TY+ L+  + +  +  E  + L F L       ++LS N   +  L+D+LC+   V+E
Sbjct: 344 LVTYTALMDWLGKQGKTDEVKDTLRFAL------SDNLSPNGVTYTVLIDALCKAHNVDE 397

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY----- 177
             ++  +M +            +I+   + G    A+    +M++RG+ P++V+Y     
Sbjct: 398 AEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLID 457

Query: 178 ------------------------------NSIVHGLCKHGGCMRAYQLLEEGIQFGYLP 207
                                         +S+V+GL ++G    A  L ++    G   
Sbjct: 458 GFFKFQGQDAALEVYHDMLCEGVKVNKFIVDSLVNGLRQNGKIEEAMALFKDASGSGLSL 517

Query: 208 SEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVL 267
               Y  L++GL    D+  A K  Q ++ +  +    + N+++  LC++    E  + L
Sbjct: 518 DHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPDAVVYNVFINCLCMLGKFKEAKSFL 577

Query: 268 VFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLN 327
             M     +PD  T NT+I   C+ G   +ALK+L++M       P+ +T+ T++ GL  
Sbjct: 578 TEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKLLHEMKMSSI-KPNLITYNTLVAGLFG 636

Query: 328 VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADST 387
            G +++A  LL + M   G+SP  +T+  VL+   + RR++   ++   M+  G+ AD T
Sbjct: 637 TGAVEKAKYLLNE-MVSAGFSPSSLTHRRVLQACSQSRRLDVILDIHEWMMNAGLHADIT 695

Query: 388 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYEL 447
            Y  ++  LC      +A    ++++      D   + A+I G C+S  +  A     ++
Sbjct: 696 VYNTLLQVLCYHGMTRKATVVLEEMLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQM 755

Query: 448 VDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           +   ++PNI  +N ++ G   +    EA  +L EM K+GL P+ +T+ IL   HG + N
Sbjct: 756 LHQNISPNIATFNTLLGGLESVGRIGEAGTVLIEMEKSGLEPNNLTYDILATGHGKQSN 814



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 139/504 (27%), Positives = 227/504 (45%), Gaps = 44/504 (8%)

Query: 4   LCGLSRVGE--AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVL 61
           L GL R G+  A     D     H  +V+ + TLI GYCR G+   A  V D M   G+ 
Sbjct: 142 LAGLCRNGQVDAAAALADRGGGIHALDVIGWNTLIAGYCRVGDTPAALSVADRMTAQGLP 201

Query: 62  PNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVN 121
            + + Y+ LV G  R   V+ A  ++      M +E  +  N A +   +   CR   V 
Sbjct: 202 MDVVGYNTLVAGFCRAGQVDAARGVL-----DMMKEAGVDPNVATYTPFIVYYCRTKGVE 256

Query: 122 EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
           E F + E M +   + +      ++  LCR GR   A  +   M K G  P+ V+Y +++
Sbjct: 257 EAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVGAAPNHVTYCTLI 316

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
             L K G       LL E +  G +    TY  L++ L  +   ++ +  L+F LS    
Sbjct: 317 DSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDEVKDTLRFALSD--- 373

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
                                              P+ +T   +I+  CK   ++EA +V
Sbjct: 374 --------------------------------NLSPNGVTYTVLIDALCKAHNVDEAEQV 401

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
           L +M   K  +P+ VTF+++I G +  G + +A     ++M +RG +P +VTY  ++ G 
Sbjct: 402 LLEM-EEKSISPNVVTFSSVINGFVKRGLLDKATEY-KRMMKERGINPNVVTYGTLIDGF 459

Query: 362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
           F+ +  + A EV++ ML  GV  +      +++GL ++ +++EA   + D        D+
Sbjct: 460 FKFQGQDAALEVYHDMLCEGVKVNKFIVDSLVNGLRQNGKIEEAMALFKDASGSGLSLDH 519

Query: 422 YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
             Y  +I GL ++G +  A  F  EL+D  + P+ V YNV I+  C L   +EA   L E
Sbjct: 520 VNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPDAVVYNVFINCLCMLGKFKEAKSFLTE 579

Query: 482 MRKNGLNPDAVTWRILDKLHGNRG 505
           MR  GL PD  T+  +   H  +G
Sbjct: 580 MRNMGLKPDQSTYNTMIVSHCRKG 603



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 131/527 (24%), Positives = 238/527 (45%), Gaps = 32/527 (6%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    V EA ++  +M+ +   PNVV+++++I+G+ + G +D A +    M+  G+
Sbjct: 386 IDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKATEYKRMMKERGI 445

Query: 61  LPNSLTYSVLVRGVLRTRDVERA-------------------NVLMFKLWERMKEEE--- 98
            PN +TY  L+ G  + +  + A                   + L+  L +  K EE   
Sbjct: 446 NPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEGVKVNKFIVDSLVNGLRQNGKIEEAMA 505

Query: 99  --------DLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC 150
                    LS+++  +  L+D L + G +   F+  +++     + +       I+ LC
Sbjct: 506 LFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPDAVVYNVFINCLC 565

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
             G+   A   +  MR  GL P   +YN+++   C+ G   +A +LL E       P+  
Sbjct: 566 MLGKFKEAKSFLTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKLLHEMKMSSIKPNLI 625

Query: 211 TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM 270
           TY  LV GL G   +EKA+ +L  M+S      +      L+A    +    +L++  +M
Sbjct: 626 TYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSLTHRRVLQACSQSRRLDVILDIHEWM 685

Query: 271 LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR 330
           +      D+   NT++   C  G   +A  VL +M+ G   APD +TF  +I G      
Sbjct: 686 MNAGLHADITVYNTLLQVLCYHGMTRKATVVLEEML-GSGIAPDTITFNALILGHCKSSH 744

Query: 331 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYA 390
           +  A     Q++ Q   SP I T+N +L GL  + R+ EA  V   M   G+  ++ TY 
Sbjct: 745 LDNAFATYAQMLHQN-ISPNIATFNTLLGGLESVGRIGEAGTVLIEMEKSGLEPNNLTYD 803

Query: 391 IVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 450
           I+  G  + +   EA R + ++V    +     Y A+I    ++G + +A     ++   
Sbjct: 804 ILATGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYNALISDFTKAGMMTQAKELFKDMQKR 863

Query: 451 GVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           GV P    Y++++ G  ++    E  + L++M++ G +P   T   +
Sbjct: 864 GVHPTSCTYDILVSGWSRIRNGTEVKKCLKDMKEKGFSPSKGTLSFI 910



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 75/337 (22%), Positives = 137/337 (40%), Gaps = 42/337 (12%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C      +A KL  +MK     PN+++Y TL+ G   TG ++ A  + +EM   G  P+S
Sbjct: 600 CRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSS 659

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           LT+  +++   ++R ++    ++  + E M     L  +   +  L+  LC  G   +  
Sbjct: 660 LTHRRVLQACSQSRRLD----VILDIHEWMMNA-GLHADITVYNTLLQVLCYHGMTRKAT 714

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRS-------------------------------- 152
            + E+M       +      +I   C+S                                
Sbjct: 715 VVLEEMLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLGGL 774

Query: 153 ---GRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSE 209
              GR   A  V+  M K GL P+ ++Y+ +  G  K    + A +L  E +  G++P  
Sbjct: 775 ESVGRIGEAGTVLIEMEKSGLEPNNLTYDILATGHGKQSNKVEAMRLYCEMVGKGFVPKV 834

Query: 210 HTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC-NIYLRALCLIKNPTELLNVLV 268
            TY  L+        + +A+++ + M  K+ V  T    +I +     I+N TE+   L 
Sbjct: 835 STYNALISDFTKAGMMTQAKELFKDM-QKRGVHPTSCTYDILVSGWSRIRNGTEVKKCLK 893

Query: 269 FMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM 305
            M +    P   TL+ +   F K G   +A ++L ++
Sbjct: 894 DMKEKGFSPSKGTLSFICRAFSKPGMTWQAQRLLKNL 930


>gi|414871539|tpg|DAA50096.1| TPA: ATP binding protein [Zea mays]
          Length = 692

 Score =  188 bits (478), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 142/515 (27%), Positives = 233/515 (45%), Gaps = 44/515 (8%)

Query: 27  PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVL 86
           PN  +Y  ++   C  G +  A  V DEM   G  P    Y V++    R      A  +
Sbjct: 157 PNAYTYFPVVRALCARGRIADALAVLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAVRV 216

Query: 87  MFKLWERMKEEEDLSVNNAAFANLV-DSLCREGYVNEVFRIAEDMP-------------- 131
           +  L  R      L V N    NLV +++C +G V+E   +  D+P              
Sbjct: 217 LEDLHARGCA---LDVGNC---NLVLNAICDQGSVDEALHLLRDLPSFGCEPDVVSYNAV 270

Query: 132 -QGKSVNEEFAC--------------------GHMIDSLCRSGRNHGASRVVYVMRKRGL 170
            +G  + + + C                      +I  LCR+G       V+  M + G 
Sbjct: 271 LKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGC 330

Query: 171 TPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARK 230
           TP +  Y +I+ G+CK G    A+++L     +G  P+   Y  L++GLC     E+  +
Sbjct: 331 TPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEE 390

Query: 231 VLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFC 290
           +L  M  K         NI +   C       ++ +L  ML+  C PDVIT  TVINGFC
Sbjct: 391 LLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFC 450

Query: 291 KMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG 350
           K G I+EA+ +L  M A   C P+ +++T ++ GL +  R  +A +L+ Q++ Q+G    
Sbjct: 451 KEGLIDEAVMLLKSMTACG-CKPNTISYTIVLKGLCSAERWVDAEDLMSQMI-QQGCPLN 508

Query: 351 IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD 410
            +T+N ++  L +   VE+A E+   ML  G   D  +Y+ VIDGL ++ + DEA    +
Sbjct: 509 PITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLN 568

Query: 411 DIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLS 470
            +V      +  +Y+++   L R G+I++ +     + D+ +  + V YN VI   CK  
Sbjct: 569 VMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRG 628

Query: 471 MKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
               A + L  M  +G  P+  T+ IL +   + G
Sbjct: 629 ETERAIEFLAYMVSSGCVPNESTYTILIRGLASEG 663



 Score =  187 bits (476), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 120/452 (26%), Positives = 218/452 (48%), Gaps = 7/452 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ +C    V EA  L  D+ S G  P+VVSY  ++ G C         ++ +EM     
Sbjct: 236 LNAICDQGSVDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMAC 295

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +T++ L+  + R    ER + ++ ++ E        + +   +A ++D +C+EG++
Sbjct: 296 PPNIVTFNTLISYLCRNGLFERVHEVLAQMVEH-----GCTPDIRMYATIIDGICKEGHL 350

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                I   MP             ++  LC + R      ++  M  +      V++N +
Sbjct: 351 EVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNIL 410

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           V   C++G   R  +LLE+ ++ G +P   TY  ++ G C E  +++A  +L+ M +   
Sbjct: 411 VDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGC 470

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
              T    I L+ LC  +   +  +++  M+Q  C  + IT NT+IN  CK G +E+A++
Sbjct: 471 KPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIE 530

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +L  M+    C+PD ++++T+I GL   G+  EAL LL  VM  +G SP  + Y+++   
Sbjct: 531 LLKQMLVNG-CSPDLISYSTVIDGLGKAGKTDEALELL-NVMVNKGMSPNTIIYSSIASA 588

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L R  R+ +  ++F+ +    + +D+  Y  VI  LC+  + + A  F   +V    + +
Sbjct: 589 LSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPN 648

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGV 452
              Y  +I+GL   G + EA   L EL   G 
Sbjct: 649 ESTYTILIRGLASEGFVKEAQEMLTELCSKGA 680



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 112/465 (24%), Positives = 221/465 (47%), Gaps = 14/465 (3%)

Query: 32  YTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLW 91
           Y  ++ GYCR G+++ A ++   +    V PN+ TY  +VR +     +  A  ++ ++ 
Sbjct: 130 YNAMVAGYCRAGQLESARRLAAAVP---VPPNAYTYFPVVRALCARGRIADALAVLDEMP 186

Query: 92  ERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCR 151
            R       +     +  ++++ CR G      R+ ED+       +   C  +++++C 
Sbjct: 187 RR-----GCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICD 241

Query: 152 SGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLC--KHGGCMRAYQLLEEGIQFGYLPSE 209
            G    A  ++  +   G  P +VSYN+++ GLC  K  GC++  +L+EE ++    P+ 
Sbjct: 242 QGSVDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQ--ELMEEMVRMACPPNI 299

Query: 210 HTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVF 269
            T+  L+  LC     E+  +VL  M+        R+    +  +C   +      +L  
Sbjct: 300 VTFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNR 359

Query: 270 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG 329
           M     +P+V+  NT++ G C   R EE  ++L +M   K C  D VTF  ++      G
Sbjct: 360 MPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMF-DKDCPLDDVTFNILVDFFCQNG 418

Query: 330 RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTY 389
            +   + LL Q++ + G  P ++TY  V+ G  +   ++EA  +   M   G   ++ +Y
Sbjct: 419 LVDRVIELLEQML-EHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISY 477

Query: 390 AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449
            IV+ GLC + +  +A+     ++      +   +  +I  LC+ G + +A+  L +++ 
Sbjct: 478 TIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLV 537

Query: 450 SGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
           +G +P+++ Y+ VIDG  K     EA ++L  M   G++P+ + +
Sbjct: 538 NGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIY 582



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 105/399 (26%), Positives = 183/399 (45%), Gaps = 5/399 (1%)

Query: 107 FANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMR 166
           +  +V   CR G +    R+A  +P   +    F    ++ +LC  GR   A  V+  M 
Sbjct: 130 YNAMVAGYCRAGQLESARRLAAAVPVPPNAYTYFP---VVRALCARGRIADALAVLDEMP 186

Query: 167 KRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLE 226
           +RG  P    Y+ I+   C+ GG   A ++LE+    G         +++  +C +  ++
Sbjct: 187 RRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVD 246

Query: 227 KARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVI 286
           +A  +L+ + S          N  L+ LC+ K    +  ++  M++  C P+++T NT+I
Sbjct: 247 EALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLI 306

Query: 287 NGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
           +  C+ G  E   +VL  MV    C PD   + TII G+   G ++ A  +L + MP  G
Sbjct: 307 SYLCRNGLFERVHEVLAQMVE-HGCTPDIRMYATIIDGICKEGHLEVAHEILNR-MPSYG 364

Query: 347 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
             P +V YN +L+GL    R EE +E+   M       D  T+ I++D  C++  +D   
Sbjct: 365 LKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVI 424

Query: 407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466
              + ++    + D   Y  +I G C+ G I EAV  L  +   G  PN + Y +V+ G 
Sbjct: 425 ELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGL 484

Query: 467 CKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
           C      +A  ++ +M + G   + +T+  L      +G
Sbjct: 485 CSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKG 523


>gi|32489931|emb|CAE05523.1| OSJNBa0038P21.16 [Oryza sativa Japonica Group]
 gi|38347491|emb|CAE05839.2| OSJNBa0091C07.1 [Oryza sativa Japonica Group]
          Length = 844

 Score =  188 bits (478), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 126/494 (25%), Positives = 237/494 (47%), Gaps = 10/494 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    + +A ++   M   G  PN ++Y +LIHGY  +G  + + +VF +M  CGV
Sbjct: 287 IDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGV 346

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNA--AFANLVDSLCREG 118
           +P     +  +  + +      A  +   +  +  + + +S +     +A   DS   + 
Sbjct: 347 IPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATATDSCLAD- 405

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
            V+ +F +   + +G + N+      +I++  R G    A  +   M+ +G+ P  V++ 
Sbjct: 406 -VHNIFNLM--LTKGIAPNKH-VFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFA 461

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
           +++  LC+ G    A       +  G  PSE  Y  L++G C   +L KA++++  M++K
Sbjct: 462 TVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNK 521

Query: 239 K-DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
                  +  +  +  LC      E  +++  M+QT  +P+V+T N+++ G+C +G +EE
Sbjct: 522 DIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEE 581

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           A  +L D +A     P+   + T++ G    GRI +AL + ++ M  +G  P  V Y+ +
Sbjct: 582 AFALL-DAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTV-FRDMLHKGVKPTSVLYSII 639

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 417
           L GLF+ RR   AK++F+ M+  G      TY +V+ GLC +N  DEA    + +   + 
Sbjct: 640 LHGLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNV 699

Query: 418 IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQ 477
             D   +  +I  + + G+  EA      +   G+ PNI  Y+++I    K     EA  
Sbjct: 700 KFDIITFNIVISAMFKVGRRQEAKELFDAISTYGLVPNIQTYSMMITNLIKEESYEEADN 759

Query: 478 ILREMRKNGLNPDA 491
           +   + K+G   D+
Sbjct: 760 LFISVEKSGHASDS 773



 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 116/491 (23%), Positives = 240/491 (48%), Gaps = 8/491 (1%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
            V +AH LF +M  +G +P ++   ++I   C+  EMD A  +  +M   G+ P+  TYS
Sbjct: 225 EVDKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYS 284

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
           +++ G+ +++ +++A     ++ E+M E      N+  + +L+      G  NE  R+ +
Sbjct: 285 LIIDGLCKSKAMDKAE----RVLEQMVEA-GTRPNSITYNSLIHGYSISGMWNESVRVFK 339

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKH- 187
            M     +     C   I +L + GR + A  +   M  +G  P ++SY++++HG     
Sbjct: 340 QMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATAT 399

Query: 188 GGCMR-AYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRI 246
             C+   + +    +  G  P++H + +L+        ++KA  + + M +K  +  T  
Sbjct: 400 DSCLADVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVT 459

Query: 247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV 306
               + +LC I    + L+    M+     P       +I G C  G + +A +++++M+
Sbjct: 460 FATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMM 519

Query: 307 AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 366
                 P    F++II  L   GR+ E  +++  +M Q G  P +VT+N+++ G   +  
Sbjct: 520 NKDIPPPGVKYFSSIINNLCKEGRVAEGKDIM-DMMVQTGQRPNVVTFNSLMEGYCLVGN 578

Query: 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAA 426
           +EEA  + + M  IG+  +   Y  ++DG C++ ++D+A   + D++       + +Y+ 
Sbjct: 579 MEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSI 638

Query: 427 MIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG 486
           ++ GL ++ +   A    +E+++SG T +I  Y VV+ G C+ +   EA  +L ++    
Sbjct: 639 ILHGLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMN 698

Query: 487 LNPDAVTWRIL 497
           +  D +T+ I+
Sbjct: 699 VKFDIITFNIV 709



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 112/481 (23%), Positives = 213/481 (44%), Gaps = 52/481 (10%)

Query: 23  RGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVER 82
           R   P + +Y  LI  Y R    D+   +   +   G+ P+  +YS L+ G ++  +V++
Sbjct: 170 RHSPPTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLGPDDFSYS-LIYGFVKDGEVDK 228

Query: 83  ANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFAC 142
           A+ L  ++ E                        +G + ++                  C
Sbjct: 229 AHCLFLEMME------------------------QGVLPKIL----------------IC 248

Query: 143 GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQ 202
             +I  LC+      A  +V  M   G+ P L +Y+ I+ GLCK     +A ++LE+ ++
Sbjct: 249 NSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVE 308

Query: 203 FGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTE 262
            G  P+  TY  L+ G        ++ +V + M S   +     CN ++ AL       E
Sbjct: 309 AGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNE 368

Query: 263 LLNVLVFMLQTQCQPDVITLNTVINGFCKMGR--IEEALKVLNDMVAGKFCAPDAVTFTT 320
              +   M+    +PD+I+ +T+++G+       + +   + N M+  K  AP+   F  
Sbjct: 369 AKCIFDSMVLKGPKPDIISYSTMLHGYATATDSCLADVHNIFNLMLT-KGIAPNKHVFNI 427

Query: 321 IIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI 380
           +I      G + +A+ L+++ M  +G  P  VT+  V+  L R+ R+++A   FN M+ I
Sbjct: 428 LINAYARCGMMDKAM-LIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDI 486

Query: 381 GVVADSTTYAIVIDGLCESNQLDEAKRFWDDI----VWPSNIHDNYVYAAMIKGLCRSGK 436
           GV      Y  +I G C   +L +AK    ++    + P  +     ++++I  LC+ G+
Sbjct: 487 GVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVK---YFSSIINNLCKEGR 543

Query: 437 IHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRI 496
           + E    +  +V +G  PN+V +N +++G C +    EA+ +L  M   G+ P+   +  
Sbjct: 544 VAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGT 603

Query: 497 L 497
           L
Sbjct: 604 L 604



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 92/193 (47%), Gaps = 2/193 (1%)

Query: 297 EALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
           E  K ++     +   P   T+  +I     V R    L ++ +++ + G  P   +Y +
Sbjct: 158 ELFKRMDRWACPRHSPPTIHTYNILIDCYRRVHRPDLGLAIVGRLL-KNGLGPDDFSY-S 215

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416
           ++ G  +   V++A  +F  M+  GV+        +I  LC+  ++D+A+     +V   
Sbjct: 216 LIYGFVKDGEVDKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSG 275

Query: 417 NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAY 476
              D + Y+ +I GLC+S  + +A   L ++V++G  PN + YN +I G     M  E+ 
Sbjct: 276 IAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESV 335

Query: 477 QILREMRKNGLNP 489
           ++ ++M   G+ P
Sbjct: 336 RVFKQMSSCGVIP 348


>gi|15240891|ref|NP_195731.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174092|sp|Q9LFC5.1|PP360_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g01110
 gi|6759434|emb|CAB69839.1| putative protein [Arabidopsis thaliana]
 gi|28973740|gb|AAO64186.1| unknown protein [Arabidopsis thaliana]
 gi|110736884|dbj|BAF00399.1| hypothetical protein [Arabidopsis thaliana]
 gi|332002917|gb|AED90300.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 729

 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 124/523 (23%), Positives = 241/523 (46%), Gaps = 44/523 (8%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           ++ EAH+ F  ++S+G   ++ +   LI    R G +++A+ V+ E+   GV  N  T +
Sbjct: 180 KLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEISRSGVGINVYTLN 239

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
           ++V  + +   +E+    + ++     +E+ +  +   +  L+ +   +G + E F +  
Sbjct: 240 IMVNALCKDGKMEKVGTFLSQV-----QEKGVYPDIVTYNTLISAYSSKGLMEEAFELMN 294

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
            MP        +    +I+ LC+ G+   A  V   M + GL+P   +Y S++   CK G
Sbjct: 295 AMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKG 354

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
             +   ++  +      +P    +  ++       +L+KA      +     +    I  
Sbjct: 355 DVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYT 414

Query: 249 IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 308
           I ++  C     +  +N+   MLQ  C  DV+T NT+++G CK   + EA K+ N+M   
Sbjct: 415 ILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTE- 473

Query: 309 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE 368
           +   PD+ T T +I G   +G +Q A+ L +Q M ++     +VTYN +L G  ++  ++
Sbjct: 474 RALFPDSYTLTILIDGHCKLGNLQNAMEL-FQKMKEKRIRLDVVTYNTLLDGFGKVGDID 532

Query: 369 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI 428
            AKE++  M+   ++    +Y+I+++ LC    L EA R WD+++  +      +  +MI
Sbjct: 533 TAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMI 592

Query: 429 KGLCRSGKIHEAVHFLYELVDSG------------------------------------- 451
           KG CRSG   +   FL +++  G                                     
Sbjct: 593 KGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGG 652

Query: 452 VTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
           + P++  YN ++ G C+ +  +EA  +LR+M + G+NPD  T+
Sbjct: 653 LVPDVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTY 695



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 118/492 (23%), Positives = 225/492 (45%), Gaps = 9/492 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   ++ +       ++ +G  P++V+Y TLI  Y   G M+ A+++ + M   G 
Sbjct: 242 VNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGF 301

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P   TY+ ++ G+ +    ERA  +  ++         LS ++  + +L+   C++G V
Sbjct: 302 SPGVYTYNTVINGLCKHGKYERAKEVFAEMLR-----SGLSPDSTTYRSLLMEACKKGDV 356

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E  ++  DM     V +      M+    RSG    A      +++ GL P  V Y  +
Sbjct: 357 VETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTIL 416

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G C+ G    A  L  E +Q G      TY  ++ GLC    L +A K+   M  +  
Sbjct: 417 IQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERAL 476

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
              +    I +   C + N    + +   M + + + DV+T NT+++GF K+G I+ A +
Sbjct: 477 FPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKE 536

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +  DMV+ K   P  ++++ ++  L + G + EA   ++  M  +   P ++  N++++G
Sbjct: 537 IWADMVS-KEILPTPISYSILVNALCSKGHLAEAFR-VWDEMISKNIKPTVMICNSMIKG 594

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN--I 418
             R     + +     M+  G V D  +Y  +I G      + +A      +       +
Sbjct: 595 YCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLV 654

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI 478
            D + Y +++ G CR  ++ EA   L ++++ GV P+   Y  +I+G        EA++I
Sbjct: 655 PDVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEAFRI 714

Query: 479 LREMRKNGLNPD 490
             EM + G +PD
Sbjct: 715 HDEMLQRGFSPD 726



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 122/504 (24%), Positives = 226/504 (44%), Gaps = 30/504 (5%)

Query: 25  HVPNV----VSYTTLIHGYCRTGEMDVAYKVFDEM-RHCGV----LPNSL---------- 65
           H PN     +S + +IH   R+G +  A      M R  GV    + NSL          
Sbjct: 105 HFPNFKHTSLSLSAMIHILVRSGRLSDAQSCLLRMIRRSGVSRLEIVNSLDSTFSNCGSN 164

Query: 66  --TYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
              + +L+R  ++ R +  A+     L       +  +V+  A   L+ SL R G+V   
Sbjct: 165 DSVFDLLIRTYVQARKLREAHEAFTLL-----RSKGFTVSIDACNALIGSLVRIGWVELA 219

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           + + +++ +       +    M+++LC+ G+       +  ++++G+ P +V+YN+++  
Sbjct: 220 WGVYQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISA 279

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFML-SKKDVD 242
               G    A++L+      G+ P  +TY  ++ GLC     E+A++V   ML S    D
Sbjct: 280 YSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPD 339

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
            T   ++ + A C   +  E   V   M      PD++  +++++ F + G +++AL   
Sbjct: 340 STTYRSLLMEA-CKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYF 398

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
           N +       PD V +T +I G    G I  A+NL  + M Q+G +  +VTYN +L GL 
Sbjct: 399 NSVKEAGLI-PDNVIYTILIQGYCRKGMISVAMNLRNE-MLQQGCAMDVVTYNTILHGLC 456

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
           + + + EA ++FN M    +  DS T  I+IDG C+   L  A   +  +       D  
Sbjct: 457 KRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVV 516

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
            Y  ++ G  + G I  A     ++V   + P  + Y+++++  C      EA+++  EM
Sbjct: 517 TYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEM 576

Query: 483 RKNGLNPDAVTWRILDKLHGNRGN 506
               + P  +    + K +   GN
Sbjct: 577 ISKNIKPTVMICNSMIKGYCRSGN 600



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/211 (22%), Positives = 100/211 (47%), Gaps = 10/211 (4%)

Query: 4   LCGLSRVGE---AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           L G  +VG+   A +++ DM S+  +P  +SY+ L++  C  G +  A++V+DEM    +
Sbjct: 522 LDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNI 581

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P  +  + +++G  R+ +       + K+       E    +  ++  L+    RE  +
Sbjct: 582 KPTVMICNSMIKGYCRSGNASDGESFLEKMIS-----EGFVPDCISYNTLIYGFVREENM 636

Query: 121 NEVFRIAEDMP--QGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
           ++ F + + M   QG  V + F    ++   CR  +   A  V+  M +RG+ P   +Y 
Sbjct: 637 SKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYT 696

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSE 209
            +++G         A+++ +E +Q G+ P +
Sbjct: 697 CMINGFVSQDNLTEAFRIHDEMLQRGFSPDD 727


>gi|226509112|ref|NP_001141010.1| uncharacterized protein LOC100273089 [Zea mays]
 gi|194702156|gb|ACF85162.1| unknown [Zea mays]
 gi|413937351|gb|AFW71902.1| hypothetical protein ZEAMMB73_497690 [Zea mays]
          Length = 567

 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 116/401 (28%), Positives = 195/401 (48%), Gaps = 18/401 (4%)

Query: 102 VNNAAFANLVDSLCREGYVNEVFRIAEDM-----PQGKSVNEEFACGHMIDSLCRSGRNH 156
            ++A+    +  L R G +++  R+ + +     P   +V     C  +I  LC SGR  
Sbjct: 65  ASSASATERLRVLVRRGELDDALRLVDSLAGLNPPSPAAVG---PCAALIKKLCASGRTA 121

Query: 157 GASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLV 216
            A RV+         P ++ YN++V G C  G    A +L+ +       P  +TY  L+
Sbjct: 122 DARRVLAAS-----GPDVMVYNAMVAGYCGAGQLDAARRLVAD---MPVEPDAYTYNTLI 173

Query: 217 EGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQ 276
            GLCG      A  VL+ M  +  +       I L A C      + + +L  M    C 
Sbjct: 174 RGLCGRGRTSNALAVLEDMFRRGCLPDVVTYTILLEATCKRSGYKQAMKLLDEMHDKGCA 233

Query: 277 PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALN 336
           PD++T N V+NG C+ GR+E+A++ L ++     C P+ V++  ++ GL    R ++A  
Sbjct: 234 PDIVTYNVVLNGICQEGRVEDAMEFLKNL-PSYGCEPNTVSYNIVLKGLFTAERWEDAEK 292

Query: 337 LLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 396
           L+ + M  +G  P +VT+N ++  L R   VE A EV   M   G   +S +Y  ++   
Sbjct: 293 LMEE-MAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLLHAF 351

Query: 397 CESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNI 456
           C+  ++ +A  F + +V      D   Y  ++  LCR+G++  A+  L++L D G +P +
Sbjct: 352 CKQKKIHKAMEFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIELLHQLKDKGCSPVL 411

Query: 457 VCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           + YN VIDG  K    +EA ++L EM   GL PD +T+  +
Sbjct: 412 ISYNTVIDGLTKAGKTKEALELLDEMTSKGLQPDIITYSTI 452



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 117/487 (24%), Positives = 232/487 (47%), Gaps = 50/487 (10%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           + +LC   R  +A ++   + + G  P+V+ Y  ++ GYC  G++D A ++  +M    V
Sbjct: 111 IKKLCASGRTADARRV---LAASG--PDVMVYNAMVAGYCGAGQLDAARRLVADM---PV 162

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P++ TY+ L+RG                                        LC  G  
Sbjct: 163 EPDAYTYNTLIRG----------------------------------------LCGRGRT 182

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +    + EDM +   + +      ++++ C+      A +++  M  +G  P +V+YN +
Sbjct: 183 SNALAVLEDMFRRGCLPDVVTYTILLEATCKRSGYKQAMKLLDEMHDKGCAPDIVTYNVV 242

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++G+C+ G    A + L+    +G  P+  +Y ++++GL      E A K+++ M  K  
Sbjct: 243 LNGICQEGRVEDAMEFLKNLPSYGCEPNTVSYNIVLKGLFTAERWEDAEKLMEEMAHKGC 302

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                  N+ +  LC        + VL  M Q  C P+ ++ N +++ FCK  +I +A++
Sbjct: 303 PPNVVTFNMLISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLLHAFCKQKKIHKAME 362

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
            +  MV+ + C PD V++ T++  L   G +  A+ LL+Q +  +G SP +++YN V+ G
Sbjct: 363 FVELMVS-RGCYPDIVSYNTLLTALCRNGEVDVAIELLHQ-LKDKGCSPVLISYNTVIDG 420

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L +  + +EA E+ + M   G+  D  TY+ +  GLC  ++++EA R +  +        
Sbjct: 421 LTKAGKTKEALELLDEMTSKGLQPDIITYSTIASGLCREDRIEEAVRTFCKVQDMGIRPT 480

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
             +Y A++ GLC+  + H A+     ++ SG  PN   Y ++++G     + +EA ++  
Sbjct: 481 AALYNAILLGLCKRRETHNAIDLFAYMISSGCMPNESTYTILVEGLAYEGLVKEARELFA 540

Query: 481 EMRKNGL 487
           ++   G+
Sbjct: 541 QLCSRGV 547



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 129/464 (27%), Positives = 212/464 (45%), Gaps = 27/464 (5%)

Query: 41  RTGEMDVAYKVFDEMRHCGVLPNSLTY----SVLVRGVL---RTRDVERANVLMFKLWER 93
           R GE+D A ++ D +   G+ P S       + L++ +    RT D  R           
Sbjct: 79  RRGELDDALRLVDSL--AGLNPPSPAAVGPCAALIKKLCASGRTADARRVLA-------- 128

Query: 94  MKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSG 153
                D+ V NA    +V   C  G ++   R+  DMP      + +    +I  LC  G
Sbjct: 129 -ASGPDVMVYNA----MVAGYCGAGQLDAARRLVADMPVEP---DAYTYNTLIRGLCGRG 180

Query: 154 RNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYK 213
           R   A  V+  M +RG  P +V+Y  ++   CK  G  +A +LL+E    G  P   TY 
Sbjct: 181 RTSNALAVLEDMFRRGCLPDVVTYTILLEATCKRSGYKQAMKLLDEMHDKGCAPDIVTYN 240

Query: 214 VLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQT 273
           V++ G+C E  +E A + L+ + S      T   NI L+ L   +   +   ++  M   
Sbjct: 241 VVLNGICQEGRVEDAMEFLKNLPSYGCEPNTVSYNIVLKGLFTAERWEDAEKLMEEMAHK 300

Query: 274 QCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQE 333
            C P+V+T N +I+  C+ G +E A++VL  M     C P+++++  ++       +I +
Sbjct: 301 GCPPNVVTFNMLISFLCRRGLVEPAMEVLEQM-PQYGCTPNSLSYNPLLHAFCKQKKIHK 359

Query: 334 ALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVI 393
           A+  + ++M  RG  P IV+YN +L  L R   V+ A E+ + +   G      +Y  VI
Sbjct: 360 AMEFV-ELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIELLHQLKDKGCSPVLISYNTVI 418

Query: 394 DGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVT 453
           DGL ++ +  EA    D++       D   Y+ +  GLCR  +I EAV    ++ D G+ 
Sbjct: 419 DGLTKAGKTKEALELLDEMTSKGLQPDIITYSTIASGLCREDRIEEAVRTFCKVQDMGIR 478

Query: 454 PNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           P    YN ++ G CK      A  +   M  +G  P+  T+ IL
Sbjct: 479 PTAALYNAILLGLCKRRETHNAIDLFAYMISSGCMPNESTYTIL 522



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 107/414 (25%), Positives = 191/414 (46%), Gaps = 45/414 (10%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           CG  ++  A +L  DM      P+  +Y TLI G C  G    A  V ++M   G LP+ 
Sbjct: 145 CGAGQLDAARRLVADMPVE---PDAYTYNTLIRGLCGRGRTSNALAVLEDMFRRGCLPDV 201

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           +TY++L+    +    ++A     KL + M  ++  + +   +  +++ +C+EG V +  
Sbjct: 202 VTYTILLEATCKRSGYKQA----MKLLDEM-HDKGCAPDIVTYNVVLNGICQEGRVEDAM 256

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
              +++P         +   ++  L  + R   A +++  M  +G  P++V++N ++  L
Sbjct: 257 EFLKNLPSYGCEPNTVSYNIVLKGLFTAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFL 316

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
           C+ G    A ++LE+  Q+G  P+  +Y  L+   C +  + KA + ++ M+S+      
Sbjct: 317 CRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLLHAFCKQKKIHKAMEFVELMVSRGCYPDI 376

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
              N  L ALC        + +L  +    C P +I+ NTVI+G  K G+ +EAL++L++
Sbjct: 377 VSYNTLLTALCRNGEVDVAIELLHQLKDKGCSPVLISYNTVIDGLTKAGKTKEALELLDE 436

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
           M + K   PD +T++TI  GL    RI+EA+    +V    G  P    YNA+L GL + 
Sbjct: 437 MTS-KGLQPDIITYSTIASGLCREDRIEEAVRTFCKVQ-DMGIRPTAALYNAILLGLCKR 494

Query: 365 RR-----------------------------------VEEAKEVFNCMLGIGVV 383
           R                                    V+EA+E+F  +   GVV
Sbjct: 495 RETHNAIDLFAYMISSGCMPNESTYTILVEGLAYEGLVKEARELFAQLCSRGVV 548



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 100/222 (45%), Gaps = 10/222 (4%)

Query: 284 TVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMP 343
            +I   C  GR  +A +VL          PD + +  ++ G    G++  A  L+   MP
Sbjct: 109 ALIKKLCASGRTADARRVL------AASGPDVMVYNAMVAGYCGAGQLDAARRLVAD-MP 161

Query: 344 QRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLD 403
                P   TYN ++RGL    R   A  V   M   G + D  TY I+++  C+ +   
Sbjct: 162 ---VEPDAYTYNTLIRGLCGRGRTSNALAVLEDMFRRGCLPDVVTYTILLEATCKRSGYK 218

Query: 404 EAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463
           +A +  D++       D   Y  ++ G+C+ G++ +A+ FL  L   G  PN V YN+V+
Sbjct: 219 QAMKLLDEMHDKGCAPDIVTYNVVLNGICQEGRVEDAMEFLKNLPSYGCEPNTVSYNIVL 278

Query: 464 DGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
            G        +A +++ EM   G  P+ VT+ +L      RG
Sbjct: 279 KGLFTAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRG 320



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/265 (26%), Positives = 119/265 (44%), Gaps = 30/265 (11%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           R  +A KL  +M  +G  PNVV++  LI   CR G ++ A +V ++M   G  PNSL+Y+
Sbjct: 286 RWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYN 345

Query: 69  VLVRGVLRTRDVERA-------------------NVLMFKLW---------ERMKEEEDL 100
            L+    + + + +A                   N L+  L          E + + +D 
Sbjct: 346 PLLHAFCKQKKIHKAMEFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIELLHQLKDK 405

Query: 101 SVNNA--AFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGA 158
             +    ++  ++D L + G   E   + ++M       +      +   LCR  R   A
Sbjct: 406 GCSPVLISYNTVIDGLTKAGKTKEALELLDEMTSKGLQPDIITYSTIASGLCREDRIEEA 465

Query: 159 SRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEG 218
            R    ++  G+ P+   YN+I+ GLCK      A  L    I  G +P+E TY +LVEG
Sbjct: 466 VRTFCKVQDMGIRPTAALYNAILLGLCKRRETHNAIDLFAYMISSGCMPNESTYTILVEG 525

Query: 219 LCGESDLEKARKVLQFMLSKKDVDR 243
           L  E  +++AR++   + S+  V++
Sbjct: 526 LAYEGLVKEARELFAQLCSRGVVNK 550


>gi|296087921|emb|CBI35204.3| unnamed protein product [Vitis vinifera]
          Length = 543

 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 130/470 (27%), Positives = 227/470 (48%), Gaps = 10/470 (2%)

Query: 45  MDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNN 104
           +D A   F+ M      P+++ ++ L+  + + +     +  +  L  +M +   +  N 
Sbjct: 42  IDGAISSFNRMLRMQPPPSTVDFNKLLTSIAKMKH----HSTLLSLSHQM-DSFGIPPNI 96

Query: 105 AAFANLVDSLCR--EGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVV 162
                L++S C    G + E   + + M       +    G +I+ LC+ G    A R++
Sbjct: 97  YTLHILINSFCHLNRGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLL 156

Query: 163 YVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGE 222
             M ++   P++ +YN+I+  LCK      A+ L  E +  G  P   TY  L+  LC  
Sbjct: 157 GSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNL 216

Query: 223 SDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQ-CQPDVIT 281
            + +    +L  M+  K +      N  + ALC     TE  +V+  M+Q   C P+VI+
Sbjct: 217 CEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGGCMPNVIS 276

Query: 282 LNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQV 341
            NT+ING+CK+ RI++A+ +  +M   +   PD VT++T+I GL +V R+Q+A+ L ++ 
Sbjct: 277 YNTLINGYCKIQRIDKAMYLFGEMCRQEL-IPDTVTYSTLIHGLCHVERLQDAIALFHE- 334

Query: 342 MPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ 401
           M      P +VTY  +L  L + R + EA  +   + G  +  D     I IDG+C + +
Sbjct: 335 MVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGE 394

Query: 402 LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNV 461
           L+ A+  + ++       D + Y+ MI GLCR G + EA     E+ ++G T N   YN 
Sbjct: 395 LEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNT 454

Query: 462 VIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGNDFGLR 511
           +  G  + +    A Q+L+EM   G + DA T  +  K+  + G D  L+
Sbjct: 455 ITRGFLRNNETSRAIQLLQEMVARGFSADASTMTLFVKMLSDDGLDQSLK 504



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 120/465 (25%), Positives = 214/465 (46%), Gaps = 32/465 (6%)

Query: 1   MDQLCGLSR--VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHC 58
           ++  C L+R  +GEA  LF  M   G  P+VV+Y TLI+G C+ G    A ++   M   
Sbjct: 103 INSFCHLNRGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQK 162

Query: 59  GVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREG 118
              PN   Y+ ++  + + R V  A    F L+  M   + +S +   + +L+ +LC   
Sbjct: 163 NCQPNVFAYNTIIDSLCKDRQVTEA----FNLFSEMV-TKGISPDIFTYNSLIHALCNLC 217

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKR-GLTPSLVSY 177
               V  +  +M   K + +  +   ++D+LC+ G+   A  VV  M +R G  P+++SY
Sbjct: 218 EWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGGCMPNVISY 277

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
           N++++G CK     +A  L  E  +   +P   TY  L+ GLC    L+ A  +   M++
Sbjct: 278 NTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEMVA 337

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
              +       I L  LC  +   E + +L  +  +   PD+   N  I+G C+ G +E 
Sbjct: 338 CSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEA 397

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           A  + +++ + K   PD  T++ +I GL   G + EA + L++ M + G +     YN +
Sbjct: 398 ARDLFSNL-SSKGLQPDVWTYSIMINGLCRRGLLDEA-SKLFREMDENGCTLNGCIYNTI 455

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 417
            RG  R      A ++   M+  G  AD++T  + +  L + + LD++ +          
Sbjct: 456 TRGFLRNNETSRAIQLLQEMVARGFSADASTMTLFVKMLSD-DGLDQSLK---------- 504

Query: 418 IHDNYVYAAMIKGLCRSGK-IHEAVHFLYELVDSGVTPNIVCYNV 461
                    +++  C+    I+E V  L E++   V  N  CY +
Sbjct: 505 --------QILRDFCKQKSWIYENVMVLQEII--LVNCNFCCYRI 539


>gi|224138176|ref|XP_002326537.1| predicted protein [Populus trichocarpa]
 gi|222833859|gb|EEE72336.1| predicted protein [Populus trichocarpa]
          Length = 826

 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 137/543 (25%), Positives = 242/543 (44%), Gaps = 56/543 (10%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   +V E  KL  D   +G +PN+V Y TL+ GY + G+++ A  +F E++  G LP 
Sbjct: 215 LCKERKVEEGRKLINDRWGKGCIPNIVFYNTLVDGYWKRGDVERANGLFKELKMKGFLPT 274

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           + TY +++ G+ +  + +  + L+ ++ ER      + VN   + ++VD+  + G   EV
Sbjct: 275 TETYGIMINGLCKKCNFKAVDGLLVEMKER-----GVDVNVQVYNSIVDAQIKHGCKIEV 329

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            +    + +     +      +I   CR G+ H A  ++    KRGL+P+ +SY  ++H 
Sbjct: 330 GKTLRWITENGCEPDITTYNTLISGSCRDGKVHEAEELLEHAIKRGLSPNKLSYTPLIHV 389

Query: 184 LCKHGGCMRAYQLL----EEG-------------------------------IQFGYLPS 208
            CK G C+RA+ L     E+G                               ++ G LP 
Sbjct: 390 YCKQGKCLRAFDLFIGMTEKGHPLDLVAYGALVHGLVAAGEVDVALTVRDKMVERGVLPD 449

Query: 209 EHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLV 268
            + Y VL+ GLC +  L  A+ +L  ML +       +    +          E   +  
Sbjct: 450 ANVYNVLMNGLCKKGRLSAAKLLLVEMLHQNLSLDAFVSATLVDGFIRHGKLDEAKKLFE 509

Query: 269 FMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNV 328
             +     P V+  N +I G+CK G + +AL  +  M  G   +PD  T++TII G +  
Sbjct: 510 LTIAKGMDPGVVGYNAMIKGYCKFGMMNDALTCVQRMKDGDH-SPDEFTYSTIIDGYVKQ 568

Query: 329 GRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTT 388
             +  AL L  Q++ Q+   P +VTY +++ G  R      A++ F  M   G+  +  T
Sbjct: 569 NDLHNALKLFGQMVKQK-CKPNVVTYTSLINGFCRTGDSSRAEKTFEEMRSSGLKPNVVT 627

Query: 389 YAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR------SGKIHEAVH 442
           Y I+I   C+  ++ +A  F++ ++    I ++  +  +I GL        S K +E++ 
Sbjct: 628 YTILIGCFCKEGKISKACSFFELMLLNRCIPNDVTFNYLINGLTNNLATAVSNKANESLE 687

Query: 443 --------FLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
                   F   ++  G    +  YN V+   C   M   A Q+  +M   G+ PD V++
Sbjct: 688 IKASLMMDFFRTMISDGWEQRVAAYNSVLICLCHHKMVNAALQLRDKMTGKGIFPDPVSF 747

Query: 495 RIL 497
             L
Sbjct: 748 AAL 750



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 102/389 (26%), Positives = 198/389 (50%), Gaps = 4/389 (1%)

Query: 110 LVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRG 169
           L+++L ++  V    ++ E+M +     + ++   M+  LC+  +     +++     +G
Sbjct: 176 LLNALIQQKKVEIARKVYEEMVKRDGCWDNYSVCIMVRGLCKERKVEEGRKLINDRWGKG 235

Query: 170 LTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKAR 229
             P++V YN++V G  K G   RA  L +E    G+LP+  TY +++ GLC + +  KA 
Sbjct: 236 CIPNIVFYNTLVDGYWKRGDVERANGLFKELKMKGFLPTTETYGIMINGLCKKCNF-KAV 294

Query: 230 KVLQFMLSKKDVD-RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVING 288
             L   + ++ VD   ++ N  + A        E+   L ++ +  C+PD+ T NT+I+G
Sbjct: 295 DGLLVEMKERGVDVNVQVYNSIVDAQIKHGCKIEVGKTLRWITENGCEPDITTYNTLISG 354

Query: 289 FCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYS 348
            C+ G++ EA ++L   +  +  +P+ +++T +I      G+   A +L    M ++G+ 
Sbjct: 355 SCRDGKVHEAEELLEHAIK-RGLSPNKLSYTPLIHVYCKQGKCLRAFDLFIG-MTEKGHP 412

Query: 349 PGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRF 408
             +V Y A++ GL     V+ A  V + M+  GV+ D+  Y ++++GLC+  +L  AK  
Sbjct: 413 LDLVAYGALVHGLVAAGEVDVALTVRDKMVERGVLPDANVYNVLMNGLCKKGRLSAAKLL 472

Query: 409 WDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACK 468
             +++  +   D +V A ++ G  R GK+ EA       +  G+ P +V YN +I G CK
Sbjct: 473 LVEMLHQNLSLDAFVSATLVDGFIRHGKLDEAKKLFELTIAKGMDPGVVGYNAMIKGYCK 532

Query: 469 LSMKREAYQILREMRKNGLNPDAVTWRIL 497
             M  +A   ++ M+    +PD  T+  +
Sbjct: 533 FGMMNDALTCVQRMKDGDHSPDEFTYSTI 561



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 121/501 (24%), Positives = 232/501 (46%), Gaps = 29/501 (5%)

Query: 7   LSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLT 66
           ++R  E + + +D+ +  ++P+V++   L++   +  ++++A KV++EM       ++ +
Sbjct: 150 VNRALELYHIAYDIHN--YLPDVIACNALLNALIQQKKVEIARKVYEEMVKRDGCWDNYS 207

Query: 67  YSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFAN-LVDSLCREGYVNEVFR 125
             ++VRG+ + R VE    L+   W +        + N  F N LVD   + G V     
Sbjct: 208 VCIMVRGLCKERKVEEGRKLINDRWGKG------CIPNIVFYNTLVDGYWKRGDVERANG 261

Query: 126 IAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLC 185
           + +++     +      G MI+ LC+         ++  M++RG+  ++  YNSIV    
Sbjct: 262 LFKELKMKGFLPTTETYGIMINGLCKKCNFKAVDGLLVEMKERGVDVNVQVYNSIVDAQI 321

Query: 186 KHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM----LSKKDV 241
           KHG  +   + L    + G  P   TY  L+ G C +  + +A ++L+      LS   +
Sbjct: 322 KHGCKIEVGKTLRWITENGCEPDITTYNTLISGSCRDGKVHEAEELLEHAIKRGLSPNKL 381

Query: 242 DRTRICNIYLR-ALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
             T + ++Y +   CL        ++ + M +     D++    +++G    G ++ AL 
Sbjct: 382 SYTPLIHVYCKQGKCL-----RAFDLFIGMTEKGHPLDLVAYGALVHGLVAAGEVDVALT 436

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           V + MV  +   PDA  +  ++ GL   GR+  A  LL +++ Q       V+   V  G
Sbjct: 437 VRDKMVE-RGVLPDANVYNVLMNGLCKKGRLSAAKLLLVEMLHQNLSLDAFVSATLV-DG 494

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA----KRFWDDIVWPS 416
             R  +++EAK++F   +  G+      Y  +I G C+   +++A    +R  D    P 
Sbjct: 495 FIRHGKLDEAKKLFELTIAKGMDPGVVGYNAMIKGYCKFGMMNDALTCVQRMKDGDHSP- 553

Query: 417 NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAY 476
              D + Y+ +I G  +   +H A+    ++V     PN+V Y  +I+G C+      A 
Sbjct: 554 ---DEFTYSTIIDGYVKQNDLHNALKLFGQMVKQKCKPNVVTYTSLINGFCRTGDSSRAE 610

Query: 477 QILREMRKNGLNPDAVTWRIL 497
           +   EMR +GL P+ VT+ IL
Sbjct: 611 KTFEEMRSSGLKPNVVTYTIL 631



 Score =  137 bits (346), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 112/449 (24%), Positives = 193/449 (42%), Gaps = 56/449 (12%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C   +V EA +L      RG  PN +SYT LIH YC+ G+   A+ +F  M   G   + 
Sbjct: 356 CRDGKVHEAEELLEHAIKRGLSPNKLSYTPLIHVYCKQGKCLRAFDLFIGMTEKGHPLDL 415

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           + Y  LV G++   +V+ A  +  K+ ER     D +V N     L++ LC++G ++   
Sbjct: 416 VAYGALVHGLVAAGEVDVALTVRDKMVER-GVLPDANVYNV----LMNGLCKKGRLSAAK 470

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
            +  +M       + F    ++D   R G+   A ++  +   +G+ P +V YN+++ G 
Sbjct: 471 LLLVEMLHQNLSLDAFVSATLVDGFIRHGKLDEAKKLFELTIAKGMDPGVVGYNAMIKGY 530

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
           CK G    A   ++      + P E TY  +++G   ++DL  A K+   M+ +K     
Sbjct: 531 CKFGMMNDALTCVQRMKDGDHSPDEFTYSTIIDGYVKQNDLHNALKLFGQMVKQK----- 585

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
                                         C+P+V+T  ++INGFC+ G    A K   +
Sbjct: 586 ------------------------------CKPNVVTYTSLINGFCRTGDSSRAEKTFEE 615

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR- 363
           M +     P+ VT+T +I      G+I +A +  +++M      P  VT+N ++ GL   
Sbjct: 616 MRSSGL-KPNVVTYTILIGCFCKEGKISKACSF-FELMLLNRCIPNDVTFNYLINGLTNN 673

Query: 364 -----LRRVEEAKEV--------FNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD 410
                  +  E+ E+        F  M+  G       Y  V+  LC    ++ A +  D
Sbjct: 674 LATAVSNKANESLEIKASLMMDFFRTMISDGWEQRVAAYNSVLICLCHHKMVNAALQLRD 733

Query: 411 DIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
            +       D   +AA++ GLC  G+  E
Sbjct: 734 KMTGKGIFPDPVSFAALVYGLCLEGRSKE 762



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 103/423 (24%), Positives = 175/423 (41%), Gaps = 56/423 (13%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C   +   A  LF  M  +GH  ++V+Y  L+HG    GE+DVA  V D+M   GVLP++
Sbjct: 391 CKQGKCLRAFDLFIGMTEKGHPLDLVAYGALVHGLVAAGEVDVALTVRDKMVERGVLPDA 450

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSL---------- 114
             Y+VL+ G+ +   +  A +L+ ++       ++LS++    A LVD            
Sbjct: 451 NVYNVLMNGLCKKGRLSAAKLLLVEMLH-----QNLSLDAFVSATLVDGFIRHGKLDEAK 505

Query: 115 -------------------------CREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSL 149
                                    C+ G +N+     + M  G    +EF    +ID  
Sbjct: 506 KLFELTIAKGMDPGVVGYNAMIKGYCKFGMMNDALTCVQRMKDGDHSPDEFTYSTIIDGY 565

Query: 150 CRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSE 209
            +    H A ++   M K+   P++V+Y S+++G C+ G   RA +  EE    G  P+ 
Sbjct: 566 VKQNDLHNALKLFGQMVKQKCKPNVVTYTSLINGFCRTGDSSRAEKTFEEMRSSGLKPNV 625

Query: 210 HTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRAL--------------C 255
            TY +L+   C E  + KA    + ML  + +      N  +  L               
Sbjct: 626 VTYTILIGCFCKEGKISKACSFFELMLLNRCIPNDVTFNYLINGLTNNLATAVSNKANES 685

Query: 256 LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA 315
           L    + +++    M+    +  V   N+V+   C    +  AL+ L D + GK   PD 
Sbjct: 686 LEIKASLMMDFFRTMISDGWEQRVAAYNSVLICLCHHKMVNAALQ-LRDKMTGKGIFPDP 744

Query: 316 VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN 375
           V+F  +++GL   GR +E  N +   + +       V Y+  L          EA +VF+
Sbjct: 745 VSFAALVYGLCLEGRSKEWKNTISCKLNEWELQIA-VKYSQKLNPFLPKGLTSEASKVFH 803

Query: 376 CML 378
            +L
Sbjct: 804 TLL 806



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 108/229 (47%), Gaps = 2/229 (0%)

Query: 277 PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALN 336
           PDVI  N ++N   +  ++E A KV  +MV    C  D  +   ++ GL    +++E   
Sbjct: 168 PDVIACNALLNALIQQKKVEIARKVYEEMVKRDGCW-DNYSVCIMVRGLCKERKVEEGRK 226

Query: 337 LLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 396
           L+      +G  P IV YN ++ G ++   VE A  +F  +   G +  + TY I+I+GL
Sbjct: 227 LINDRW-GKGCIPNIVFYNTLVDGYWKRGDVERANGLFKELKMKGFLPTTETYGIMINGL 285

Query: 397 CESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNI 456
           C+            ++       +  VY +++    + G   E    L  + ++G  P+I
Sbjct: 286 CKKCNFKAVDGLLVEMKERGVDVNVQVYNSIVDAQIKHGCKIEVGKTLRWITENGCEPDI 345

Query: 457 VCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
             YN +I G+C+     EA ++L    K GL+P+ +++  L  ++  +G
Sbjct: 346 TTYNTLISGSCRDGKVHEAEELLEHAIKRGLSPNKLSYTPLIHVYCKQG 394



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/251 (23%), Positives = 110/251 (43%), Gaps = 1/251 (0%)

Query: 247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV 306
           C+  L+ L   +   E+ N+L  M      P    L+ V+  +   G +  AL++ +   
Sbjct: 102 CSSLLKLLARCRVFVEVENLLETMKCKDLAPTREALSFVVGAYVDSGLVNRALELYHIAY 161

Query: 307 AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 366
                 PD +    ++  L+   +++ A  + Y+ M +R       +   ++RGL + R+
Sbjct: 162 DIHNYLPDVIACNALLNALIQQKKVEIARKV-YEEMVKRDGCWDNYSVCIMVRGLCKERK 220

Query: 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAA 426
           VEE +++ N   G G + +   Y  ++DG  +   ++ A   + ++     +     Y  
Sbjct: 221 VEEGRKLINDRWGKGCIPNIVFYNTLVDGYWKRGDVERANGLFKELKMKGFLPTTETYGI 280

Query: 427 MIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG 486
           MI GLC+          L E+ + GV  N+  YN ++D   K   K E  + LR + +NG
Sbjct: 281 MINGLCKKCNFKAVDGLLVEMKERGVDVNVQVYNSIVDAQIKHGCKIEVGKTLRWITENG 340

Query: 487 LNPDAVTWRIL 497
             PD  T+  L
Sbjct: 341 CEPDITTYNTL 351


>gi|115449873|ref|NP_001048572.1| Os02g0824000 [Oryza sativa Japonica Group]
 gi|113538103|dbj|BAF10486.1| Os02g0824000 [Oryza sativa Japonica Group]
          Length = 1013

 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 136/539 (25%), Positives = 246/539 (45%), Gaps = 44/539 (8%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R  EA+ LF +M   G  PN V+Y TLI    + G       +  EM   GV+ +
Sbjct: 284 LCRDGRFSEAYALFREMDKVGAAPNHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMD 343

Query: 64  SLTYSVLVRGVLRT-RDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
            +TY+ L+  + +  +  E  + L F L       ++LS N   +  L+D+LC+   V+E
Sbjct: 344 LVTYTALMDWLGKQGKTDEVKDTLRFAL------SDNLSPNGVTYTVLIDALCKAHNVDE 397

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY----- 177
             ++  +M +            +I+   + G    A+    +M++RG+ P++V+Y     
Sbjct: 398 AEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLID 457

Query: 178 ------------------------------NSIVHGLCKHGGCMRAYQLLEEGIQFGYLP 207
                                         +S+V+GL ++G    A  L ++    G   
Sbjct: 458 GFFKFQGQDAALEVYHDMLCEGVKVNKFIVDSLVNGLRQNGKIEEAMALFKDASGSGLSL 517

Query: 208 SEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVL 267
               Y  L++GL    D+  A K  Q ++ +  +    + N+++  LC++    E  + L
Sbjct: 518 DHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPDAVVYNVFINCLCMLGKFKEAKSFL 577

Query: 268 VFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLN 327
             M     +PD  T NT+I   C+ G   +ALK+L++M       P+ +T+ T++ GL  
Sbjct: 578 TEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKLLHEMKMSSI-KPNLITYNTLVAGLFG 636

Query: 328 VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADST 387
            G +++A  LL + M   G+SP  +T+  VL+   + RR++   ++   M+  G+ AD T
Sbjct: 637 TGAVEKAKYLLNE-MVSAGFSPSSLTHRRVLQACSQSRRLDVILDIHEWMMNAGLHADIT 695

Query: 388 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYEL 447
            Y  ++  LC      +A    ++++      D   + A+I G C+S  +  A     ++
Sbjct: 696 VYNTLLQVLCYHGMTRKATVVLEEMLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQM 755

Query: 448 VDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           +   ++PNI  +N ++ G   +    EA  +L EM K+GL P+ +T+ IL   HG + N
Sbjct: 756 LHQNISPNIATFNTLLGGLESVGRIGEAGTVLIEMEKSGLEPNNLTYDILATGHGKQSN 814



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 139/504 (27%), Positives = 227/504 (45%), Gaps = 44/504 (8%)

Query: 4   LCGLSRVGE--AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVL 61
           L GL R G+  A     D     H  +V+ + TLI GYCR G+   A  V D M   G+ 
Sbjct: 142 LAGLCRNGQVDAAAALADRGGGIHALDVIGWNTLIAGYCRVGDTPAALSVADRMTAQGLP 201

Query: 62  PNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVN 121
            + + Y+ LV G  R   V+ A  ++      M +E  +  N A +   +   CR   V 
Sbjct: 202 MDVVGYNTLVAGFCRAGQVDAARGVL-----DMMKEAGVDPNVATYTPFIVYYCRTKGVE 256

Query: 122 EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
           E F + E M +   + +      ++  LCR GR   A  +   M K G  P+ V+Y +++
Sbjct: 257 EAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVGAAPNHVTYCTLI 316

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
             L K G       LL E +  G +    TY  L++ L  +   ++ +  L+F LS    
Sbjct: 317 DSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDEVKDTLRFALSD--- 373

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
                                              P+ +T   +I+  CK   ++EA +V
Sbjct: 374 --------------------------------NLSPNGVTYTVLIDALCKAHNVDEAEQV 401

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
           L +M   K  +P+ VTF+++I G +  G + +A     ++M +RG +P +VTY  ++ G 
Sbjct: 402 LLEM-EEKSISPNVVTFSSVINGFVKRGLLDKATEY-KRMMKERGINPNVVTYGTLIDGF 459

Query: 362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
           F+ +  + A EV++ ML  GV  +      +++GL ++ +++EA   + D        D+
Sbjct: 460 FKFQGQDAALEVYHDMLCEGVKVNKFIVDSLVNGLRQNGKIEEAMALFKDASGSGLSLDH 519

Query: 422 YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
             Y  +I GL ++G +  A  F  EL+D  + P+ V YNV I+  C L   +EA   L E
Sbjct: 520 VNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPDAVVYNVFINCLCMLGKFKEAKSFLTE 579

Query: 482 MRKNGLNPDAVTWRILDKLHGNRG 505
           MR  GL PD  T+  +   H  +G
Sbjct: 580 MRNMGLKPDQSTYNTMIVSHCRKG 603



 Score =  171 bits (434), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 126/505 (24%), Positives = 229/505 (45%), Gaps = 32/505 (6%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    V EA ++  +M+ +   PNVV+++++I+G+ + G +D A +    M+  G+
Sbjct: 386 IDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKATEYKRMMKERGI 445

Query: 61  LPNSLTYSVLVRGVLRTRDVERA-------------------NVLMFKLWERMKEEE--- 98
            PN +TY  L+ G  + +  + A                   + L+  L +  K EE   
Sbjct: 446 NPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEGVKVNKFIVDSLVNGLRQNGKIEEAMA 505

Query: 99  --------DLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC 150
                    LS+++  +  L+D L + G +   F+  +++     + +       I+ LC
Sbjct: 506 LFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPDAVVYNVFINCLC 565

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
             G+   A   +  MR  GL P   +YN+++   C+ G   +A +LL E       P+  
Sbjct: 566 MLGKFKEAKSFLTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKLLHEMKMSSIKPNLI 625

Query: 211 TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM 270
           TY  LV GL G   +EKA+ +L  M+S      +      L+A    +    +L++  +M
Sbjct: 626 TYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSLTHRRVLQACSQSRRLDVILDIHEWM 685

Query: 271 LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR 330
           +      D+   NT++   C  G   +A  VL +M+ G   APD +TF  +I G      
Sbjct: 686 MNAGLHADITVYNTLLQVLCYHGMTRKATVVLEEML-GSGIAPDTITFNALILGHCKSSH 744

Query: 331 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYA 390
           +  A     Q++ Q   SP I T+N +L GL  + R+ EA  V   M   G+  ++ TY 
Sbjct: 745 LDNAFATYAQMLHQN-ISPNIATFNTLLGGLESVGRIGEAGTVLIEMEKSGLEPNNLTYD 803

Query: 391 IVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 450
           I+  G  + +   EA R + ++V    +     Y A+I    ++G + +A     ++   
Sbjct: 804 ILATGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYNALISDFTKAGMMTQAKELFKDMQKR 863

Query: 451 GVTPNIVCYNVVIDGACKLSMKREA 475
           GV P    Y++++ G   L+ ++++
Sbjct: 864 GVHPTSCTYDILVSGWYDLAREQKS 888



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 92/401 (22%), Positives = 166/401 (41%), Gaps = 42/401 (10%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           ++ EA  LF D    G   + V+YTTLI G  + G+M  A+K   E+    +LP+++ Y+
Sbjct: 499 KIEEAMALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPDAVVYN 558

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
           V +  +      + A   + ++   M  + D S  N     ++ S CR+G   +  ++  
Sbjct: 559 VFINCLCMLGKFKEAKSFLTEM-RNMGLKPDQSTYN----TMIVSHCRKGETAKALKLLH 613

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVS------------ 176
           +M              ++  L  +G    A  ++  M   G +PS ++            
Sbjct: 614 EMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSLTHRRVLQACSQSR 673

Query: 177 -----------------------YNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYK 213
                                  YN+++  LC HG   +A  +LEE +  G  P   T+ 
Sbjct: 674 RLDVILDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVVLEEMLGSGIAPDTITFN 733

Query: 214 VLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQT 273
            L+ G C  S L+ A      ML +         N  L  L  +    E   VL+ M ++
Sbjct: 734 ALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLGGLESVGRIGEAGTVLIEMEKS 793

Query: 274 QCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQE 333
             +P+ +T + +  G  K     EA+++  +MV GK   P   T+  +I      G + +
Sbjct: 794 GLEPNNLTYDILATGHGKQSNKVEAMRLYCEMV-GKGFVPKVSTYNALISDFTKAGMMTQ 852

Query: 334 ALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVF 374
           A   L++ M +RG  P   TY+ ++ G + L R ++++  +
Sbjct: 853 AKE-LFKDMQKRGVHPTSCTYDILVSGWYDLAREQKSQNTY 892


>gi|414882130|tpg|DAA59261.1| TPA: hypothetical protein ZEAMMB73_845952 [Zea mays]
          Length = 1603

 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 141/494 (28%), Positives = 236/494 (47%), Gaps = 32/494 (6%)

Query: 19   DMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEM--RHCGVLPNSLTYSVLVRGVLR 76
            +M   G  P++V+Y TL+  + + G  D    +  EM  R  G LPN +TY+V++ G+ R
Sbjct: 1109 EMLELGIEPSIVTYNTLLDSFLKEGRKDKVAMLLKEMETRGSGCLPNDVTYNVVITGLTR 1168

Query: 77   TRDVERANVLMFKLWERMKEEEDLSVNNAAFA--NLVDSLCREGYVNEVFRIAEDMPQGK 134
              D+E A  L+    E M+    LS   ++F    L+  L   G V +V+ +  +M    
Sbjct: 1169 KGDLEEAAELV----EGMR----LSKKASSFTYNPLITGLLARGCVKKVYDLQLEMENEG 1220

Query: 135  SVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAY 194
             +        MI  L +SG    A      MR  GL P +++YNS+++G CK G    A 
Sbjct: 1221 IMPTVVTYNAMIHGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNSLLNGYCKAGNLKEAL 1280

Query: 195  QLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRAL 254
             L  +  + G  P+  TY +L++G C   DLE+AR + + M  +  +       I ++  
Sbjct: 1281 LLFGDLRRAGLAPTVLTYNILIDGYCRLGDLEEARILKEEMGEQGCLPNVCTYTILMKGS 1340

Query: 255  CLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPD 314
              +++          ML    QPD    NT I     +G I  A + L +++  +  + D
Sbjct: 1341 LNVRSLAMAREFFDEMLSKGLQPDCFAYNTRICAELILGDIARAFE-LREVLMLEGISSD 1399

Query: 315  AVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL-----RGLFRLRRVEE 369
             VT+  +I GL   G +++A  L  + M   G  P  +TY  ++     RGL R     E
Sbjct: 1400 TVTYNILIHGLCKTGNLKDAKELQMK-MVSNGLQPDCITYTCLIHAHCERGLLR-----E 1453

Query: 370  AKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA----KRFWDDIVWPSNIHDNYVYA 425
            A+++FN M+  G++  + T+ ++I   C    L  A    ++  ++ V P+ I     Y 
Sbjct: 1454 ARKIFNNMISDGLLPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEI----TYN 1509

Query: 426  AMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN 485
             +I  LCR G+   A H  +E+++ G+  N   Y ++IDG CK+    +A +   EM +N
Sbjct: 1510 VLIHALCRMGRTQLASHHFHEMLERGLVANKYTYTLLIDGNCKVGNWEDAMRFYFEMHQN 1569

Query: 486  GLNPDAVTWRILDK 499
            G++PD +T + L K
Sbjct: 1570 GIHPDYLTHKALLK 1583



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 118/481 (24%), Positives = 214/481 (44%), Gaps = 6/481 (1%)

Query: 17   FFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLR 76
            F +M S G  P+V     ++         D    V +EM   G+ P+ +TY+ L+   L+
Sbjct: 1072 FREMASHGVAPDVKDCNRVLRVLRDAARWDDICAVHEEMLELGIEPSIVTYNTLLDSFLK 1131

Query: 77   TRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSV 136
                ++  +L+ ++  R         N+  +  ++  L R+G + E   + E M   K  
Sbjct: 1132 EGRKDKVAMLLKEMETR---GSGCLPNDVTYNVVITGLTRKGDLEEAAELVEGMRLSKKA 1188

Query: 137  NEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQL 196
            +  F    +I  L   G       +   M   G+ P++V+YN+++HGL + G    A   
Sbjct: 1189 SS-FTYNPLITGLLARGCVKKVYDLQLEMENEGIMPTVVTYNAMIHGLLQSGLVEAAQVK 1247

Query: 197  LEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCL 256
              E    G LP   TY  L+ G C   +L++A  +   +            NI +   C 
Sbjct: 1248 FAEMRAMGLLPDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGLAPTVLTYNILIDGYCR 1307

Query: 257  IKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAV 316
            + +  E   +   M +  C P+V T   ++ G   +  +  A +  ++M++ K   PD  
Sbjct: 1308 LGDLEEARILKEEMGEQGCLPNVCTYTILMKGSLNVRSLAMAREFFDEMLS-KGLQPDCF 1366

Query: 317  TFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNC 376
             + T I   L +G I  A  L  +V+   G S   VTYN ++ GL +   +++AKE+   
Sbjct: 1367 AYNTRICAELILGDIARAFEL-REVLMLEGISSDTVTYNILIHGLCKTGNLKDAKELQMK 1425

Query: 377  MLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGK 436
            M+  G+  D  TY  +I   CE   L EA++ +++++    +     +  +I   CR G 
Sbjct: 1426 MVSNGLQPDCITYTCLIHAHCERGLLREARKIFNNMISDGLLPSAVTFTVIIHAYCRRGN 1485

Query: 437  IHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRI 496
            ++ A  +  ++++ GV PN + YNV+I   C++   + A     EM + GL  +  T+ +
Sbjct: 1486 LYSAYGWFRKMLEEGVEPNEITYNVLIHALCRMGRTQLASHHFHEMLERGLVANKYTYTL 1545

Query: 497  L 497
            L
Sbjct: 1546 L 1546



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 103/366 (28%), Positives = 177/366 (48%), Gaps = 9/366 (2%)

Query: 145  MIDSLCRSGRNHGASRVVYVMRKRG--LTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQ 202
            ++DS  + GR    + ++  M  RG    P+ V+YN ++ GL + G    A +L+E G++
Sbjct: 1125 LLDSFLKEGRKDKVAMLLKEMETRGSGCLPNDVTYNVVITGLTRKGDLEEAAELVE-GMR 1183

Query: 203  FGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC-NIYLRALCLIKNPT 261
                 S  TY  L+ GL     ++K    LQ  +  + +  T +  N  +  L L     
Sbjct: 1184 LSKKASSFTYNPLITGLLARGCVKKVYD-LQLEMENEGIMPTVVTYNAMIHGL-LQSGLV 1241

Query: 262  ELLNV-LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTT 320
            E   V    M      PDVIT N+++NG+CK G ++EAL +  D+      AP  +T+  
Sbjct: 1242 EAAQVKFAEMRAMGLLPDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGL-APTVLTYNI 1300

Query: 321  IIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI 380
            +I G   +G ++EA  +L + M ++G  P + TY  +++G   +R +  A+E F+ ML  
Sbjct: 1301 LIDGYCRLGDLEEA-RILKEEMGEQGCLPNVCTYTILMKGSLNVRSLAMAREFFDEMLSK 1359

Query: 381  GVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEA 440
            G+  D   Y   I        +  A    + ++      D   Y  +I GLC++G + +A
Sbjct: 1360 GLQPDCFAYNTRICAELILGDIARAFELREVLMLEGISSDTVTYNILIHGLCKTGNLKDA 1419

Query: 441  VHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKL 500
                 ++V +G+ P+ + Y  +I   C+  + REA +I   M  +GL P AVT+ ++   
Sbjct: 1420 KELQMKMVSNGLQPDCITYTCLIHAHCERGLLREARKIFNNMISDGLLPSAVTFTVIIHA 1479

Query: 501  HGNRGN 506
            +  RGN
Sbjct: 1480 YCRRGN 1485



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 102/344 (29%), Positives = 174/344 (50%), Gaps = 7/344 (2%)

Query: 165  MRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY--LPSEHTYKVLVEGLCGE 222
            M + G+ PS+V+YN+++    K G   +   LL+E    G   LP++ TY V++ GL  +
Sbjct: 1110 MLELGIEPSIVTYNTLLDSFLKEGRKDKVAMLLKEMETRGSGCLPNDVTYNVVITGLTRK 1169

Query: 223  SDLEKARKVLQFM-LSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVIT 281
             DLE+A ++++ M LSKK    T   N  +  L       ++ ++ + M      P V+T
Sbjct: 1170 GDLEEAAELVEGMRLSKKASSFTY--NPLITGLLARGCVKKVYDLQLEMENEGIMPTVVT 1227

Query: 282  LNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQV 341
             N +I+G  + G +E A     +M A     PD +T+ +++ G    G ++EAL LL+  
Sbjct: 1228 YNAMIHGLLQSGLVEAAQVKFAEMRAMGLL-PDVITYNSLLNGYCKAGNLKEAL-LLFGD 1285

Query: 342  MPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ 401
            + + G +P ++TYN ++ G  RL  +EEA+ +   M   G + +  TY I++ G      
Sbjct: 1286 LRRAGLAPTVLTYNILIDGYCRLGDLEEARILKEEMGEQGCLPNVCTYTILMKGSLNVRS 1345

Query: 402  LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNV 461
            L  A+ F+D+++      D + Y   I      G I  A      L+  G++ + V YN+
Sbjct: 1346 LAMAREFFDEMLSKGLQPDCFAYNTRICAELILGDIARAFELREVLMLEGISSDTVTYNI 1405

Query: 462  VIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
            +I G CK    ++A ++  +M  NGL PD +T+  L   H  RG
Sbjct: 1406 LIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHCERG 1449



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 96/363 (26%), Positives = 170/363 (46%), Gaps = 29/363 (7%)

Query: 10   VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSV 69
            V  A   F +M++ G +P+V++Y +L++GYC+ G +  A  +F ++R  G+ P  LTY++
Sbjct: 1241 VEAAQVKFAEMRAMGLLPDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGLAPTVLTYNI 1300

Query: 70   LVRGVLRTRDVERANVLMFKLWER----------MKEEEDLSVNNAAFA-NLVDSLCREG 118
            L+ G  R  D+E A +L  ++ E+          +  +  L+V + A A    D +  +G
Sbjct: 1301 LIDGYCRLGDLEEARILKEEMGEQGCLPNVCTYTILMKGSLNVRSLAMAREFFDEMLSKG 1360

Query: 119  YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
               + F          + N       ++  + R      A  +  V+   G++   V+YN
Sbjct: 1361 LQPDCF----------AYNTRICAELILGDIAR------AFELREVLMLEGISSDTVTYN 1404

Query: 179  SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
             ++HGLCK G    A +L  + +  G  P   TY  L+   C    L +ARK+   M+S 
Sbjct: 1405 ILIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHCERGLLREARKIFNNMISD 1464

Query: 239  KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
              +       + + A C   N          ML+   +P+ IT N +I+  C+MGR + A
Sbjct: 1465 GLLPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRMGRTQLA 1524

Query: 299  LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
                ++M+     A +  T+T +I G   VG  ++A+   ++ M Q G  P  +T+ A+L
Sbjct: 1525 SHHFHEMLERGLVA-NKYTYTLLIDGNCKVGNWEDAMRFYFE-MHQNGIHPDYLTHKALL 1582

Query: 359  RGL 361
            +G 
Sbjct: 1583 KGF 1585



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 85/339 (25%), Positives = 142/339 (41%), Gaps = 40/339 (11%)

Query: 5    CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
            C    + EA  LF D++  G  P V++Y  LI GYCR G+++ A  + +EM   G LPN 
Sbjct: 1271 CKAGNLKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGDLEEARILKEEMGEQGCLPNV 1330

Query: 65   LTYSVLVRGVLRTRDVERANVLM------------FKLWERMKEE--------------- 97
             TY++L++G L  R +  A                F    R+  E               
Sbjct: 1331 CTYTILMKGSLNVRSLAMAREFFDEMLSKGLQPDCFAYNTRICAELILGDIARAFELREV 1390

Query: 98   ---EDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGR 154
               E +S +   +  L+  LC+ G + +   +   M       +      +I + C  G 
Sbjct: 1391 LMLEGISSDTVTYNILIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHCERGL 1450

Query: 155  NHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAY----QLLEEGIQFGYLPSEH 210
               A ++   M   GL PS V++  I+H  C+ G    AY    ++LEEG++    P+E 
Sbjct: 1451 LREARKIFNNMISDGLLPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVE----PNEI 1506

Query: 211  TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM 270
            TY VL+  LC     + A      ML +  V       + +   C + N  + +     M
Sbjct: 1507 TYNVLIHALCRMGRTQLASHHFHEMLERGLVANKYTYTLLIDGNCKVGNWEDAMRFYFEM 1566

Query: 271  LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK 309
             Q    PD +T   ++ GF   G +   ++ L++++ G+
Sbjct: 1567 HQNGIHPDYLTHKALLKGF--DGHVHHTIEYLDNVILGE 1603


>gi|242084804|ref|XP_002442827.1| hypothetical protein SORBIDRAFT_08g003450 [Sorghum bicolor]
 gi|241943520|gb|EES16665.1| hypothetical protein SORBIDRAFT_08g003450 [Sorghum bicolor]
          Length = 899

 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 128/474 (27%), Positives = 230/474 (48%), Gaps = 46/474 (9%)

Query: 59  GVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREG 118
           G   N  +Y++L++G+  TR V  A VL+      M  ++  S+N   +  L+  LC+EG
Sbjct: 155 GCRRNEYSYTILIQGLCETRCVREALVLLV-----MMVQDGCSLNLHTYTLLIKGLCKEG 209

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
            ++   R+ E+MP    V   +    MID  C+SGR   A  +  +M + G  P   +YN
Sbjct: 210 RIHGARRVLEEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKALMERNGCNPDDWTYN 269

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS- 237
            +++GLC       A +LL + I  G+ P+  T+  ++ G C    ++ A +V   MLS 
Sbjct: 270 ILIYGLCGEKP-DEAEELLNDAIVRGFTPTVITFTNIINGYCKAERIDDALRVKTSMLSS 328

Query: 238 --KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 295
             K D+    +    L   C  K   E ++    M      P+V+   ++I+G+CK+G++
Sbjct: 329 NCKLDLQAYGVLINVLIKKCRFKEAKETVSE---MFANGLAPNVVIYTSIIDGYCKVGKV 385

Query: 296 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN 355
             AL+V   ++  + C P+A T++++I+GL+   ++ +A+ L+ + M + G +PG++TY 
Sbjct: 386 GAALEVFR-LMEHEGCRPNAWTYSSLIYGLIQDQKLHKAMALITK-MQEDGITPGVITYT 443

Query: 356 AVLRG---------LFRLRRVEE-----------------------AKEVFNCMLGIGVV 383
            +++G          FRL  + E                       A+E ++ ++  GVV
Sbjct: 444 TLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTHALCKSGRAEEAYSFLVRKGVV 503

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
               TY  ++DG  ++   D A    + +V      D+Y Y+ +++ LC+  K++EA+  
Sbjct: 504 LTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADSYTYSVLLQALCKQKKLNEALSI 563

Query: 444 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           L ++  SGV  NIV Y ++I    K      A  +  EM  +G  P A T+ + 
Sbjct: 564 LDQMTLSGVKCNIVAYTIIISEMIKEGKHDHAKSMFNEMISSGHKPSATTYTVF 617



 Score =  181 bits (459), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 136/513 (26%), Positives = 243/513 (47%), Gaps = 39/513 (7%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           R  EA +   +M + G  PNVV YT++I GYC+ G++  A +VF  M H G  PN+ TYS
Sbjct: 349 RFKEAKETVSEMFANGLAPNVVIYTSIIDGYCKVGKVGAALEVFRLMEHEGCRPNAWTYS 408

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
            L+ G+++ + + +A  L+ K+     +E+ ++     +  L+   C++   +  FR+ E
Sbjct: 409 SLIYGLIQDQKLHKAMALITKM-----QEDGITPGVITYTTLIQGQCKKHEFDNAFRLFE 463

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
            M Q     +E A   +  +LC+SGR   A      + ++G+  + V+Y S+V G  K G
Sbjct: 464 MMEQNGLTPDEQAYNVLTHALCKSGR---AEEAYSFLVRKGVVLTKVTYTSLVDGFSKAG 520

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVL-QFMLSKKDVDRTRIC 247
               A  L+E+ +  G     +TY VL++ LC +  L +A  +L Q  LS         C
Sbjct: 521 NTDFAAVLIEKMVNEGCKADSYTYSVLLQALCKQKKLNEALSILDQMTLSGVK------C 574

Query: 248 NIYLRALC---LIKNPTELLNVLVF--MLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
           NI    +    +IK         +F  M+ +  +P   T    I+ +CK+G+IEEA  ++
Sbjct: 575 NIVAYTIIISEMIKEGKHDHAKSMFNEMISSGHKPSATTYTVFISSYCKIGQIEEAEHLI 634

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR--- 359
            +M      APD VT+   I G  ++G +  A + L + M      P   TY  +L+   
Sbjct: 635 GEMERDGV-APDVVTYNVFINGCGHMGYMDRAFSTLKR-MIDASCEPNYWTYWILLKHFL 692

Query: 360 -------------GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
                        G++    ++   ++   M+  G+   + TY+ +I G C++ +L+EA 
Sbjct: 693 KMSLVDAHYVDTSGMWNWIELDTVWQLLERMVKHGLNPTAVTYSSIIAGFCKATRLEEAC 752

Query: 407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466
             +D +       +  +Y  +IK  C      +AV F+ ++++ G  P++  Y+ +I G 
Sbjct: 753 VLFDHMRGKDISPNEEIYTMLIKCCCDIKLFGKAVSFVTDMIEFGFQPHLESYHYLIVGL 812

Query: 467 CKLSMKREAYQILREMR-KNGLNPDAVTWRILD 498
           C      +A  +  ++      N + V W+IL+
Sbjct: 813 CDEGDYDKAKSLFCDLLGMEDYNHNEVAWKILN 845



 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 128/496 (25%), Positives = 212/496 (42%), Gaps = 11/496 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R+  A ++  +M  RG VP+V +Y  +I GYC++G M  A  +   M   G  P+
Sbjct: 205 LCKEGRIHGARRVLEEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKALMERNGCNPD 264

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             TY++L+ G+   +  E   +L   +          +     F N+++  C+   +++ 
Sbjct: 265 DWTYNILIYGLCGEKPDEAEELLNDAI------VRGFTPTVITFTNIINGYCKAERIDDA 318

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            R+   M       +  A G +I+ L +  R   A   V  M   GL P++V Y SI+ G
Sbjct: 319 LRVKTSMLSSNCKLDLQAYGVLINVLIKKCRFKEAKETVSEMFANGLAPNVVIYTSIIDG 378

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK G    A ++       G  P+  TY  L+ GL  +  L KA  ++  M        
Sbjct: 379 YCKVGKVGAALEVFRLMEHEGCRPNAWTYSSLIYGLIQDQKLHKAMALITKMQEDGITPG 438

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                  ++  C          +   M Q    PD    N + +  CK GR EEA   L 
Sbjct: 439 VITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTHALCKSGRAEEAYSFL- 497

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
                K      VT+T+++ G    G    A  +L + M   G      TY+ +L+ L +
Sbjct: 498 ---VRKGVVLTKVTYTSLVDGFSKAGNTDFA-AVLIEKMVNEGCKADSYTYSVLLQALCK 553

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
            +++ EA  + + M   GV  +   Y I+I  + +  + D AK  +++++   +      
Sbjct: 554 QKKLNEALSILDQMTLSGVKCNIVAYTIIISEMIKEGKHDHAKSMFNEMISSGHKPSATT 613

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y   I   C+ G+I EA H + E+   GV P++V YNV I+G   +     A+  L+ M 
Sbjct: 614 YTVFISSYCKIGQIEEAEHLIGEMERDGVAPDVVTYNVFINGCGHMGYMDRAFSTLKRMI 673

Query: 484 KNGLNPDAVTWRILDK 499
                P+  T+ IL K
Sbjct: 674 DASCEPNYWTYWILLK 689



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 107/402 (26%), Positives = 177/402 (44%), Gaps = 39/402 (9%)

Query: 130 MPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG 189
           MP       E++   +I  LC +     A  ++ +M + G + +L +Y  ++ GLCK G 
Sbjct: 151 MPLMGCRRNEYSYTILIQGLCETRCVREALVLLVMMVQDGCSLNLHTYTLLIKGLCKEGR 210

Query: 190 CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNI 249
              A ++LEE    G +PS  TY  +++G C    ++ A  +   M            NI
Sbjct: 211 IHGARRVLEEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKALMERNGCNPDDWTYNI 270

Query: 250 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG- 308
            +  LC  K P E   +L   +     P VIT   +ING+CK  RI++AL+V   M++  
Sbjct: 271 LIYGLCGEK-PDEAEELLNDAIVRGFTPTVITFTNIINGYCKAERIDDALRVKTSMLSSN 329

Query: 309 ----------------KFC-----------------APDAVTFTTIIFGLLNVGRIQEAL 335
                           K C                 AP+ V +T+II G   VG++  AL
Sbjct: 330 CKLDLQAYGVLINVLIKKCRFKEAKETVSEMFANGLAPNVVIYTSIIDGYCKVGKVGAAL 389

Query: 336 NLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG 395
             ++++M   G  P   TY++++ GL + +++ +A  +   M   G+     TY  +I G
Sbjct: 390 E-VFRLMEHEGCRPNAWTYSSLIYGLIQDQKLHKAMALITKMQEDGITPGVITYTTLIQG 448

Query: 396 LCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN 455
            C+ ++ D A R ++ +       D   Y  +   LC+SG+  EA  F   LV  GV   
Sbjct: 449 QCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTHALCKSGRAEEAYSF---LVRKGVVLT 505

Query: 456 IVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            V Y  ++DG  K      A  ++ +M   G   D+ T+ +L
Sbjct: 506 KVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADSYTYSVL 547



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 100/464 (21%), Positives = 175/464 (37%), Gaps = 118/464 (25%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           ++ +A  L   M+  G  P V++YTTLI G C+  E D A+++F+ M   G+ P+   Y+
Sbjct: 419 KLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYN 478

Query: 69  VLVRGVLRTRDVERANVLMFK----------------------------LWERMKEEEDL 100
           VL   + ++   E A   + +                            L E+M  E   
Sbjct: 479 VLTHALCKSGRAEEAYSFLVRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNE-GC 537

Query: 101 SVNNAAFANLVDSLCREGYVNEVFRIAEDMP--------------------QGKS----- 135
             ++  ++ L+ +LC++  +NE   I + M                     +GK      
Sbjct: 538 KADSYTYSVLLQALCKQKKLNEALSILDQMTLSGVKCNIVAYTIIISEMIKEGKHDHAKS 597

Query: 136 -VNEEFACGH---------MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLC 185
             NE  + GH          I S C+ G+   A  ++  M + G+ P +V+YN  ++G C
Sbjct: 598 MFNEMISSGHKPSATTYTVFISSYCKIGQIEEAEHLIGEMERDGVAPDVVTYNVFING-C 656

Query: 186 KHGGCM-RAY-------------------------------------------------- 194
            H G M RA+                                                  
Sbjct: 657 GHMGYMDRAFSTLKRMIDASCEPNYWTYWILLKHFLKMSLVDAHYVDTSGMWNWIELDTV 716

Query: 195 -QLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRA 253
            QLLE  ++ G  P+  TY  ++ G C  + LE+A  +   M  K       I  + ++ 
Sbjct: 717 WQLLERMVKHGLNPTAVTYSSIIAGFCKATRLEEACVLFDHMRGKDISPNEEIYTMLIKC 776

Query: 254 LCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAP 313
            C IK   + ++ +  M++   QP + + + +I G C  G  ++A  +  D++  +    
Sbjct: 777 CCDIKLFGKAVSFVTDMIEFGFQPHLESYHYLIVGLCDEGDYDKAKSLFCDLLGMEDYNH 836

Query: 314 DAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           + V +  +  GLL  G +     LL   M  R       TY+ V
Sbjct: 837 NEVAWKILNDGLLKAGHVDFCSQLL-SAMENRHCQIDSETYSMV 879



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 89/195 (45%), Gaps = 1/195 (0%)

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           K++  MV+    A D       I  +  VG        L  +MP  G      +Y  +++
Sbjct: 109 KLVVSMVSCSDTAEDMREAVDAIQAIRRVGGDLRKACWLLMMMPLMGCRRNEYSYTILIQ 168

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
           GL   R V EA  +   M+  G   +  TY ++I GLC+  ++  A+R  +++     + 
Sbjct: 169 GLCETRCVREALVLLVMMVQDGCSLNLHTYTLLIKGLCKEGRIHGARRVLEEMPLRGVVP 228

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
             + Y AMI G C+SG++ +A+     +  +G  P+   YN++I G C      EA ++L
Sbjct: 229 SVWTYNAMIDGYCKSGRMKDALGIKALMERNGCNPDDWTYNILIYGLCG-EKPDEAEELL 287

Query: 480 REMRKNGLNPDAVTW 494
            +    G  P  +T+
Sbjct: 288 NDAIVRGFTPTVITF 302


>gi|222637127|gb|EEE67259.1| hypothetical protein OsJ_24425 [Oryza sativa Japonica Group]
          Length = 799

 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 139/503 (27%), Positives = 230/503 (45%), Gaps = 15/503 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC L  + EA +LF ++  +    N  SY  L+   C  G +  A+++FDEM      P+
Sbjct: 233 LCRLP-LDEAVQLFQELPEK----NTCSYNILLKALCTAGRIKDAHQLFDEM---ASPPD 284

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY ++V G     ++E A  L+ ++  R      L +N  A+ +++  LC EG V++ 
Sbjct: 285 VVTYGIMVHGYCTLSELETAIKLLSEMAAR-----GLELNPVAYTSVIALLCDEGQVSDA 339

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            R+ EDM     V +      ++   CR G    A      M+KRGL    V+Y ++++G
Sbjct: 340 VRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALING 399

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LC+ G    A ++L+E    G      TY VL++G C    + +A  V   M+ K+    
Sbjct: 400 LCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPN 459

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                     LC   +      +L  M     + ++ T N++ING CK G +E+A++ + 
Sbjct: 460 VVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMI 519

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           DM       PD  T+TTII  L     +  A +LL Q M  +G  P IVTYN ++ G   
Sbjct: 520 DMDEAGL-KPDVYTYTTIIGALCQSKELDRAHSLL-QEMLDKGIKPTIVTYNVLMNGFCM 577

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
             RVE  K +   ML   +  ++TTY  ++   C    +      +  ++    + +   
Sbjct: 578 SGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENT 637

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y  +IKG C++  + EA++F  E+++ G       YN +I    K     EA ++  +MR
Sbjct: 638 YNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRLFEKMR 697

Query: 484 KNGLNPDAVTWRILDKLHGNRGN 506
           K  L  +   +     L  N  N
Sbjct: 698 KERLTAEPDVYNFYIDLSFNEDN 720



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 105/413 (25%), Positives = 202/413 (48%), Gaps = 13/413 (3%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   +V +A ++  DM   G V +   +TT++ G+CR G++  A   FDEM+  G+  +
Sbjct: 330 LCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAAD 389

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY+ L+ G+ R  +++ A  ++ ++     E++ L V+   +  L+D  C+ G + E 
Sbjct: 390 GVTYTALINGLCRAGELKEAERVLQEM-----EDKGLDVDAVTYTVLIDGYCKVGKMTEA 444

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           F +   M Q +          + D LC+ G    A+ +++ M  +GL  ++ +YNS+++G
Sbjct: 445 FLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLING 504

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LCK G   +A + + +  + G  P  +TY  ++  LC   +L++A  +LQ ML K     
Sbjct: 505 LCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPT 564

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               N+ +   C+         +L +ML+    P+  T N+++  +C    IE+ +K   
Sbjct: 565 IVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYC----IEKNMKSTT 620

Query: 304 DMVAGKFC---APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           ++  G       P+  T+  +I G      ++EAL   +  M ++G+     +YNA++R 
Sbjct: 621 EIYKGMLSQEVVPNENTYNILIKGHCKARNMKEAL-YFHSEMIEKGFRLTASSYNALIRL 679

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413
           L + ++  EA+ +F  M    + A+   Y   ID     + L+      D++V
Sbjct: 680 LNKKKKFTEARRLFEKMRKERLTAEPDVYNFYIDLSFNEDNLESTLALCDELV 732


>gi|115472343|ref|NP_001059770.1| Os07g0513200 [Oryza sativa Japonica Group]
 gi|27818007|dbj|BAC55770.1| putative CRP1 protein [Oryza sativa Japonica Group]
 gi|50509504|dbj|BAD31185.1| putative CRP1 protein [Oryza sativa Japonica Group]
 gi|113611306|dbj|BAF21684.1| Os07g0513200 [Oryza sativa Japonica Group]
 gi|215715304|dbj|BAG95055.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 754

 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 139/503 (27%), Positives = 230/503 (45%), Gaps = 15/503 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC L  + EA +LF ++  +    N  SY  L+   C  G +  A+++FDEM      P+
Sbjct: 233 LCRLP-LDEAVQLFQELPEK----NTCSYNILLKALCTAGRIKDAHQLFDEM---ASPPD 284

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY ++V G     ++E A  L+ ++  R      L +N  A+ +++  LC EG V++ 
Sbjct: 285 VVTYGIMVHGYCTLSELETAIKLLSEMAAR-----GLELNPVAYTSVIALLCDEGQVSDA 339

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            R+ EDM     V +      ++   CR G    A      M+KRGL    V+Y ++++G
Sbjct: 340 VRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALING 399

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LC+ G    A ++L+E    G      TY VL++G C    + +A  V   M+ K+    
Sbjct: 400 LCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPN 459

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                     LC   +      +L  M     + ++ T N++ING CK G +E+A++ + 
Sbjct: 460 VVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMI 519

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           DM       PD  T+TTII  L     +  A +LL Q M  +G  P IVTYN ++ G   
Sbjct: 520 DMDEAGL-KPDVYTYTTIIGALCQSKELDRAHSLL-QEMLDKGIKPTIVTYNVLMNGFCM 577

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
             RVE  K +   ML   +  ++TTY  ++   C    +      +  ++    + +   
Sbjct: 578 SGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENT 637

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y  +IKG C++  + EA++F  E+++ G       YN +I    K     EA ++  +MR
Sbjct: 638 YNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRLFEKMR 697

Query: 484 KNGLNPDAVTWRILDKLHGNRGN 506
           K  L  +   +     L  N  N
Sbjct: 698 KERLTAEPDVYNFYIDLSFNEDN 720



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 105/413 (25%), Positives = 202/413 (48%), Gaps = 13/413 (3%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   +V +A ++  DM   G V +   +TT++ G+CR G++  A   FDEM+  G+  +
Sbjct: 330 LCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAAD 389

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY+ L+ G+ R  +++ A  ++ ++     E++ L V+   +  L+D  C+ G + E 
Sbjct: 390 GVTYTALINGLCRAGELKEAERVLQEM-----EDKGLDVDAVTYTVLIDGYCKVGKMTEA 444

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           F +   M Q +          + D LC+ G    A+ +++ M  +GL  ++ +YNS+++G
Sbjct: 445 FLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLING 504

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LCK G   +A + + +  + G  P  +TY  ++  LC   +L++A  +LQ ML K     
Sbjct: 505 LCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPT 564

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               N+ +   C+         +L +ML+    P+  T N+++  +C    IE+ +K   
Sbjct: 565 IVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYC----IEKNMKSTT 620

Query: 304 DMVAGKFC---APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           ++  G       P+  T+  +I G      ++EAL   +  M ++G+     +YNA++R 
Sbjct: 621 EIYKGMLSQEVVPNENTYNILIKGHCKARNMKEAL-YFHSEMIEKGFRLTASSYNALIRL 679

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413
           L + ++  EA+ +F  M    + A+   Y   ID     + L+      D++V
Sbjct: 680 LNKKKKFTEARRLFEKMRKERLTAEPDVYNFYIDLSFNEDNLESTLALCDELV 732


>gi|297833514|ref|XP_002884639.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330479|gb|EFH60898.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 864

 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 134/471 (28%), Positives = 224/471 (47%), Gaps = 44/471 (9%)

Query: 18  FDMKSRGHV--PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVL 75
           FD+ SR     PN VSY+ LIHG C  G ++ A+ + D+M   G  P++ TY+VL++ + 
Sbjct: 253 FDLMSREGTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALC 312

Query: 76  RTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKS 135
               +++A    F L++ M        N   +  L+D LCR+G + E   +   M +   
Sbjct: 313 DRGLIDKA----FNLFDEMIAR-GCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDGI 367

Query: 136 VNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQ 195
                    +I+  C+ GR   A  ++ VM KR   P++ ++N ++ GLC+ G   +A  
Sbjct: 368 FPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVH 427

Query: 196 LLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALC 255
           LL+  +  G  P   +Y VL++GLC E  +  A K+L  M                    
Sbjct: 428 LLKRMLDNGLSPDIVSYNVLIDGLCREGHMNVAYKLLTSM-------------------- 467

Query: 256 LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA 315
              N  +L            +PD +T   +IN FCK G+ + A   L  M+  K  + D 
Sbjct: 468 ---NSFDL------------EPDCLTFTAIINAFCKQGKADVASAFLGLMLR-KGISLDE 511

Query: 316 VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN 375
           VT TT+I G+ NVG+ ++AL +L  ++  R  +    + N +L  L +  +++E   +  
Sbjct: 512 VTGTTLIDGVCNVGKTRDALFILETLVKMRMLTTP-HSLNVILDMLSKGCKLKEELAMLG 570

Query: 376 CMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG 435
            +  +G+V    TY  ++DGL  S  +  + R  + +     + + Y Y  +I GLC+ G
Sbjct: 571 KINKLGLVPSVVTYTTLVDGLIRSGDISGSFRMLELMKLSGCLPNVYPYTIIINGLCQFG 630

Query: 436 KIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG 486
           ++ EA   L  + DSGV+PN V Y V++ G         A + +R M + G
Sbjct: 631 RVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRALETVRAMVERG 681



 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 121/494 (24%), Positives = 230/494 (46%), Gaps = 6/494 (1%)

Query: 13  AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVR 72
           A+  +  M++ G V  ++ Y T+++  C+ G  + A     ++   G L +S   + L+ 
Sbjct: 179 AYVTYRRMEADGFVVGMIDYRTIVNALCKNGYTEAAEMFMCKILKVGFLLDSHIVTSLLL 238

Query: 73  GVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQ 132
           G  R  ++  A     K+++ M  E   + N+ +++ L+  LC  G + E F + + M +
Sbjct: 239 GFCRGLNLRDA----LKVFDLMSREGTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGE 294

Query: 133 GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMR 192
                       +I +LC  G    A  +   M  RG  P++ +Y  ++ GLC+ G    
Sbjct: 295 KGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIARGCKPNVHTYTVLIDGLCRDGKIEE 354

Query: 193 AYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLR 252
           A  +  + ++ G  PS  TY  L+ G C +  +  A ++L  M  +      R  N  + 
Sbjct: 355 ANGVCRKMVKDGIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELME 414

Query: 253 ALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCA 312
            LC +  P + +++L  ML     PD+++ N +I+G C+ G +  A K+L  M +     
Sbjct: 415 GLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNVAYKLLTSMNSFDL-E 473

Query: 313 PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKE 372
           PD +TFT II      G+   A   L  +M ++G S   VT   ++ G+  + +  +A  
Sbjct: 474 PDCLTFTAIINAFCKQGKADVASAFL-GLMLRKGISLDEVTGTTLIDGVCNVGKTRDALF 532

Query: 373 VFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLC 432
           +   ++ + ++    +  +++D L +  +L E       I     +     Y  ++ GL 
Sbjct: 533 ILETLVKMRMLTTPHSLNVILDMLSKGCKLKEELAMLGKINKLGLVPSVVTYTTLVDGLI 592

Query: 433 RSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAV 492
           RSG I  +   L  +  SG  PN+  Y ++I+G C+     EA ++L  M+ +G++P+ V
Sbjct: 593 RSGDISGSFRMLELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHV 652

Query: 493 TWRILDKLHGNRGN 506
           T+ ++ K + N G 
Sbjct: 653 TYTVMVKGYVNNGK 666



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 117/439 (26%), Positives = 210/439 (47%), Gaps = 19/439 (4%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC + R+ EA  L   M  +G  P+  +YT LI   C  G +D A+ +FDEM   G  PN
Sbjct: 276 LCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIARGCKPN 335

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             TY+VL+ G+ R   +E AN +  K+      ++ +  +   +  L++  C++G V   
Sbjct: 336 VHTYTVLIDGLCRDGKIEEANGVCRKMV-----KDGIFPSVITYNALINGYCKDGRVVPA 390

Query: 124 FRIAEDM------PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
           F +   M      P  ++ NE      +++ LCR G+ + A  ++  M   GL+P +VSY
Sbjct: 391 FELLTVMEKRACKPNVRTFNE------LMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSY 444

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
           N ++ GLC+ G    AY+LL     F   P   T+  ++   C +   + A   L  ML 
Sbjct: 445 NVLIDGLCREGHMNVAYKLLTSMNSFDLEPDCLTFTAIINAFCKQGKADVASAFLGLMLR 504

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
           K            +  +C +    + L +L  +++ +      +LN +++   K  +++E
Sbjct: 505 KGISLDEVTGTTLIDGVCNVGKTRDALFILETLVKMRMLTTPHSLNVILDMLSKGCKLKE 564

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
            L +L  +       P  VT+TT++ GL+  G I  +  +L ++M   G  P +  Y  +
Sbjct: 565 ELAMLGKINKLGL-VPSVVTYTTLVDGLIRSGDISGSFRML-ELMKLSGCLPNVYPYTII 622

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 417
           + GL +  RVEEA+++ + M   GV  +  TY +++ G   + +LD A      +V    
Sbjct: 623 INGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRALETVRAMVERGY 682

Query: 418 IHDNYVYAAMIKGLCRSGK 436
             ++ +Y+++++G   S K
Sbjct: 683 ELNDRIYSSLLRGFVLSQK 701



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 121/492 (24%), Positives = 234/492 (47%), Gaps = 23/492 (4%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   ++ EA+ +   M   G  P+V++Y  LI+GYC+ G +  A+++   M     
Sbjct: 343 IDGLCRDGKIEEANGVCRKMVKDGIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRAC 402

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN  T++ L+ G+ R     +A      L +RM  +  LS +  ++  L+D LCREG++
Sbjct: 403 KPNVRTFNELMEGLCRVGKPYKA----VHLLKRML-DNGLSPDIVSYNVLIDGLCREGHM 457

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           N  +++   M       +      +I++ C+ G+   AS  + +M ++G++   V+  ++
Sbjct: 458 NVAYKLLTSMNSFDLEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTL 517

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCG----ESDLEKARKVLQFML 236
           + G+C  G    A  +LE  ++   L + H+  V+++ L      + +L    K+ +  L
Sbjct: 518 IDGVCNVGKTRDALFILETLVKMRMLTTPHSLNVILDMLSKGCKLKEELAMLGKINKLGL 577

Query: 237 SKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIE 296
               V  T + +  +R+     + +    +L  M  + C P+V     +ING C+ GR+E
Sbjct: 578 VPSVVTYTTLVDGLIRS----GDISGSFRMLELMKLSGCLPNVYPYTIIINGLCQFGRVE 633

Query: 297 EALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
           EA K+L+ M      +P+ VT+T ++ G +N G++  AL  + + M +RGY      Y++
Sbjct: 634 EAEKLLSAMQDSGV-SPNHVTYTVMVKGYVNNGKLDRALETV-RAMVERGYELNDRIYSS 691

Query: 357 VLRGL------FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD 410
           +LRG        R    E  KE+ + +  +G  + S     ++  LC+  + DE+     
Sbjct: 692 LLRGFVLSQKGIRETDPECIKELISVVEQLG-GSTSGLCIFLVTRLCKEGRTDESNGLVQ 750

Query: 411 DIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLS 470
            I+  S +        +++  C   K  + V  +  ++ SG  P+   + +VI G  K  
Sbjct: 751 TIL-KSGVFLEKAIDIIMESYCSKKKHTKCVELITLVLKSGFVPSFKSFCLVIQGLKKEG 809

Query: 471 MKREAYQILREM 482
               A +++ E+
Sbjct: 810 DTERARELVMEL 821



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 99/450 (22%), Positives = 188/450 (41%), Gaps = 51/450 (11%)

Query: 6   GLSRVGEAHK---LFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           GL RVG+ +K   L   M   G  P++VSY  LI G CR G M+VAYK+   M    + P
Sbjct: 415 GLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNVAYKLLTSMNSFDLEP 474

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           + LT++ ++    +    + A+  +  +  +      +S++      L+D +C  G   +
Sbjct: 475 DCLTFTAIINAFCKQGKADVASAFLGLMLRK-----GISLDEVTGTTLIDGVCNVGKTRD 529

Query: 123 VFRIAEDM-------------------PQGKSVNEEFAC----------------GHMID 147
              I E +                    +G  + EE A                   ++D
Sbjct: 530 ALFILETLVKMRMLTTPHSLNVILDMLSKGCKLKEELAMLGKINKLGLVPSVVTYTTLVD 589

Query: 148 SLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLP 207
            L RSG   G+ R++ +M+  G  P++  Y  I++GLC+ G    A +LL      G  P
Sbjct: 590 GLIRSGDISGSFRMLELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSP 649

Query: 208 SEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIK-----NPTE 262
           +  TY V+V+G      L++A + ++ M+ +      RI +  LR   L +        E
Sbjct: 650 NHVTYTVMVKGYVNNGKLDRALETVRAMVERGYELNDRIYSSLLRGFVLSQKGIRETDPE 709

Query: 263 LLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTII 322
            +  L+ +++            ++   CK GR +E+  ++  ++        A+    I+
Sbjct: 710 CIKELISVVEQLGGSTSGLCIFLVTRLCKEGRTDESNGLVQTILKSGVFLEKAIDI--IM 767

Query: 323 FGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGV 382
               +  +  + + L+  V+ + G+ P   ++  V++GL +    E A+E+   +L    
Sbjct: 768 ESYCSKKKHTKCVELITLVL-KSGFVPSFKSFCLVIQGLKKEGDTERARELVMELLTSNG 826

Query: 383 VADSTTYAIVIDGLCESNQLDEAKRFWDDI 412
           V + +     ++ L E+    E     D +
Sbjct: 827 VVEKSGVLPYVECLMETGDCSEVIDLVDQL 856



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 75/161 (46%), Gaps = 1/161 (0%)

Query: 346 GYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA 405
           G+      Y+++L  L +L     A   +  M   G V     Y  +++ LC++   + A
Sbjct: 155 GFRLNYPCYSSLLMSLAKLDLGFLAYVTYRRMEADGFVVGMIDYRTIVNALCKNGYTEAA 214

Query: 406 KRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGV-TPNIVCYNVVID 464
           + F   I+    + D+++  +++ G CR   + +A+     +   G   PN V Y+++I 
Sbjct: 215 EMFMCKILKVGFLLDSHIVTSLLLGFCRGLNLRDALKVFDLMSREGTCAPNSVSYSILIH 274

Query: 465 GACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
           G C++    EA+ +  +M + G  P   T+ +L K   +RG
Sbjct: 275 GLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRG 315


>gi|357164338|ref|XP_003580022.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Brachypodium distachyon]
          Length = 966

 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 129/500 (25%), Positives = 228/500 (45%), Gaps = 64/500 (12%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M + G  PN   + +L+HGYC  G+   AYK+F+ M  CG  P  + Y++ +  +    +
Sbjct: 332 MMTEGCNPNPSLFNSLVHGYCNAGDYAYAYKLFNRMTTCGSPPGYVAYNIFIGSICGQEE 391

Query: 80  VERANVLMFKLWERMKEE---EDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSV 136
           +  A +L   L E++ EE       +N    AN    LC  G   + F+I ++M      
Sbjct: 392 LPNAELL--DLVEKVYEEMLAASCVLNKVNTANFSRCLCGVGKFEKAFQILKEM------ 443

Query: 137 NEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQL 196
                                       MRK G  P   +Y  ++  LC+     +++ L
Sbjct: 444 ----------------------------MRK-GFVPDTSTYTKVITFLCQAKKVEKSFLL 474

Query: 197 LEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM----LSKKDVDRTRICNIYLR 252
            +E  + G  P  +TY +L++  C    +E+AR     M     S   V  T + + YL+
Sbjct: 475 FQEMKRAGVNPDVYTYTILIDSFCKAGLIEQARSWFDEMRSVGCSPNVVTYTALLHAYLK 534

Query: 253 ALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK--- 309
           +  LI+      ++   M+   C P+ +T + +I+G CK G I++A +V   ++      
Sbjct: 535 SKQLIQAH----DIFHRMVDAACYPNAVTYSALIDGLCKAGEIQKACEVYEKLIGTSGNV 590

Query: 310 ------------FCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
                         AP+ VT+  +I GL    ++ +A  LL   M   G  P  + Y+A+
Sbjct: 591 ESDFYFEGNDTCTIAPNVVTYGALIDGLCKAQKVSDAHELL-DAMLAAGCEPNQIVYDAL 649

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 417
           + G  ++ +++ A+EVF  M   G +    TY  +ID + +  +LD A +   +++  S 
Sbjct: 650 IDGFCKIGKIDNAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSC 709

Query: 418 IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQ 477
             +   Y AMI GL + G+I +A++ L  + + G +PN+V Y  +IDG  K      + +
Sbjct: 710 NPNVVTYTAMIDGLSKVGEIEKALNLLSLMEEKGCSPNVVTYTALIDGLGKTGKADASLK 769

Query: 478 ILREMRKNGLNPDAVTWRIL 497
           + ++M   G  P+ VT+R+L
Sbjct: 770 LFKQMNSKGCAPNYVTYRVL 789



 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 131/505 (25%), Positives = 240/505 (47%), Gaps = 30/505 (5%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   +V ++  LF +MK  G  P+V +YT LI  +C+ G ++ A   FDEMR  G  PN
Sbjct: 462 LCQAKKVEKSFLLFQEMKRAGVNPDVYTYTILIDSFCKAGLIEQARSWFDEMRSVGCSPN 521

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY+ L+   L+++ + +A+     ++ RM +      N   ++ L+D LC+ G + + 
Sbjct: 522 VVTYTALLHAYLKSKQLIQAH----DIFHRMVDAA-CYPNAVTYSALIDGLCKAGEIQKA 576

Query: 124 FRIAEDMPQGKSVNEE-----------------FACGHMIDSLCRSGRNHGASRVVYVMR 166
             + E +  G S N E                    G +ID LC++ +   A  ++  M 
Sbjct: 577 CEVYEKLI-GTSGNVESDFYFEGNDTCTIAPNVVTYGALIDGLCKAQKVSDAHELLDAML 635

Query: 167 KRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLE 226
             G  P+ + Y++++ G CK G    A ++     + GYLPS HTY  L++ +  +  L+
Sbjct: 636 AAGCEPNQIVYDALIDGFCKIGKIDNAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLD 695

Query: 227 KARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVI 286
            A KVL  ML+             +  L  +    + LN+L  M +  C P+V+T   +I
Sbjct: 696 LAMKVLSEMLNDSCNPNVVTYTAMIDGLSKVGEIEKALNLLSLMEEKGCSPNVVTYTALI 755

Query: 287 NGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
           +G  K G+ + +LK+   M + K CAP+ VT+  +I      G + EA +LL   M    
Sbjct: 756 DGLGKTGKADASLKLFKQMNS-KGCAPNYVTYRVLINHCCAAGLLDEA-HLLLDEMKHTH 813

Query: 347 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
           +   +  Y+  ++G    ++   +  +   M     V  +  Y ++ID   ++ +L+ A 
Sbjct: 814 WPKHLQGYHCAVQGFS--KKFIASLGLLEEMESHETVPIAPVYGMLIDSFSKAGRLETAL 871

Query: 407 RFWDDIVWPS---NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463
               ++V  S   N+    +YA++I+ LC + ++ EA     E+   G+ P+++ +  ++
Sbjct: 872 ELHKELVEVSSSLNMTSTGMYASLIQALCLASQVEEAFTLYTEMTRKGIVPDLIVFVSLV 931

Query: 464 DGACKLSMKREAYQILREMRKNGLN 488
            G  +++   EA Q+       G+N
Sbjct: 932 KGLIEVNKWDEALQLCYGRCHEGVN 956



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 138/588 (23%), Positives = 253/588 (43%), Gaps = 100/588 (17%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGE------MDVAYKVFDEMRHC 58
           C       A+KLF  M + G  P  V+Y   I   C   E      +D+  KV++EM   
Sbjct: 352 CNAGDYAYAYKLFNRMTTCGSPPGYVAYNIFIGSICGQEELPNAELLDLVEKVYEEMLAA 411

Query: 59  GVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREG 118
             + N +  +   R +      E+A    F++ + M   +    + + +  ++  LC+  
Sbjct: 412 SCVLNKVNTANFSRCLCGVGKFEKA----FQILKEMM-RKGFVPDTSTYTKVITFLCQAK 466

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
            V + F + ++M +     + +    +IDS C++G    A      MR  G +P++V+Y 
Sbjct: 467 KVEKSFLLFQEMKRAGVNPDVYTYTILIDSFCKAGLIEQARSWFDEMRSVGCSPNVVTYT 526

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
           +++H   K    ++A+ +    +     P+  TY  L++GLC   +++KA +V + ++  
Sbjct: 527 ALLHAYLKSKQLIQAHDIFHRMVDAACYPNAVTYSALIDGLCKAGEIQKACEVYEKLIGT 586

Query: 239 KD-------VDRTRICNI---------YLRALCLIKNPTELLNVLVFMLQTQCQPDVITL 282
                     +    C I          +  LC  +  ++   +L  ML   C+P+ I  
Sbjct: 587 SGNVESDFYFEGNDTCTIAPNVVTYGALIDGLCKAQKVSDAHELLDAMLAAGCEPNQIVY 646

Query: 283 NTVINGFCKMGRIEE-----------------------------------ALKVLNDMVA 307
           + +I+GFCK+G+I+                                    A+KVL++M+ 
Sbjct: 647 DALIDGFCKIGKIDNAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSEMLN 706

Query: 308 GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRV 367
              C P+ VT+T +I GL  VG I++ALNLL  +M ++G SP +VTY A++ GL +  + 
Sbjct: 707 DS-CNPNVVTYTAMIDGLSKVGEIEKALNLL-SLMEEKGCSPNVVTYTALIDGLGKTGKA 764

Query: 368 EEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV---WPSNIHDNY-- 422
           + + ++F  M   G   +  TY ++I+  C +  LDEA    D++    WP ++   +  
Sbjct: 765 DASLKLFKQMNSKGCAPNYVTYRVLINHCCAAGLLDEAHLLLDEMKHTHWPKHLQGYHCA 824

Query: 423 ----------------------------VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTP 454
                                       VY  +I    ++G++  A+    ELV+   + 
Sbjct: 825 VQGFSKKFIASLGLLEEMESHETVPIAPVYGMLIDSFSKAGRLETALELHKELVEVSSSL 884

Query: 455 NIVC---YNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
           N+     Y  +I   C  S   EA+ +  EM + G+ PD + +  L K
Sbjct: 885 NMTSTGMYASLIQALCLASQVEEAFTLYTEMTRKGIVPDLIVFVSLVK 932



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 121/529 (22%), Positives = 229/529 (43%), Gaps = 54/529 (10%)

Query: 35  LIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVE------------- 81
           L+   CR G  D A +    ++  G  P+++TY+ LV+ +     VE             
Sbjct: 175 LVRRCCRHGLWDEALEELGRLKDFGYRPSAVTYNALVQVLASAGQVEMGFRVQKEMSASG 234

Query: 82  ----RANVLMFKL-------WE---RMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIA 127
               R+ +  F         W     M E+ED +++      ++  L      NE     
Sbjct: 235 FCMDRSTIGYFAQALCKVGRWADALNMLEKEDFNLDTVLCTQMISGLMEASLFNEAMSFL 294

Query: 128 EDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKH 187
             M     +        ++    +  +     R++ +M   G  P+   +NS+VHG C  
Sbjct: 295 HRMRCNSCIPNVVTYRTLLSGFLKKKQFGWCKRIINMMMTEGCNPNPSLFNSLVHGYCNA 354

Query: 188 GGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKA------RKVLQFMLSKKDV 241
           G    AY+L       G  P    Y + +  +CG+ +L  A       KV + ML+   V
Sbjct: 355 GDYAYAYKLFNRMTTCGSPPGYVAYNIFIGSICGQEELPNAELLDLVEKVYEEMLAASCV 414

Query: 242 -DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
            ++    N + R LC +    +   +L  M++    PD  T   VI   C+  ++E++  
Sbjct: 415 LNKVNTAN-FSRCLCGVGKFEKAFQILKEMMRKGFVPDTSTYTKVITFLCQAKKVEKSFL 473

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +  +M       PD  T+T +I      G I++A +  +  M   G SP +VTY A+L  
Sbjct: 474 LFQEMKRAGV-NPDVYTYTILIDSFCKAGLIEQARS-WFDEMRSVGCSPNVVTYTALLHA 531

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS-NIH 419
             + +++ +A ++F+ M+      ++ TY+ +IDGLC++ ++ +A   ++ ++  S N+ 
Sbjct: 532 YLKSKQLIQAHDIFHRMVDAACYPNAVTYSALIDGLCKAGEIQKACEVYEKLIGTSGNVE 591

Query: 420 DNY---------------VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
            ++                Y A+I GLC++ K+ +A   L  ++ +G  PN + Y+ +ID
Sbjct: 592 SDFYFEGNDTCTIAPNVVTYGALIDGLCKAQKVSDAHELLDAMLAAGCEPNQIVYDALID 651

Query: 465 GACKLSMKREAYQILREMRKNGLNPDAVTW-RILDKLHGNRGNDFGLRI 512
           G CK+     A ++   M K G  P   T+  ++D++  +   D  +++
Sbjct: 652 GFCKIGKIDNAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKV 700



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 69/308 (22%), Positives = 110/308 (35%), Gaps = 42/308 (13%)

Query: 190 CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNI 249
           C+R +   E   Q GY  +   Y  L E L  E     A ++L+ +         R+ N+
Sbjct: 117 CVRFFLWAER--QVGYSHTGACYDALAEILGFEDPARTAERLLREIGEDDREVLRRLLNV 174

Query: 250 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK 309
            +R  C      E L  L  +     +P  +T N ++      G++E   +V  +M A  
Sbjct: 175 LVRRCCRHGLWDEALEELGRLKDFGYRPSAVTYNALVQVLASAGQVEMGFRVQKEMSASG 234

Query: 310 FCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEE 369
           FC  D  T       L  VGR  +ALN+L                               
Sbjct: 235 FCM-DRSTIGYFAQALCKVGRWADALNML------------------------------- 262

Query: 370 AKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIK 429
            KE FN         D+     +I GL E++  +EA  F   +   S I +   Y  ++ 
Sbjct: 263 EKEDFN--------LDTVLCTQMISGLMEASLFNEAMSFLHRMRCNSCIPNVVTYRTLLS 314

Query: 430 GLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNP 489
           G  +  +       +  ++  G  PN   +N ++ G C       AY++   M   G  P
Sbjct: 315 GFLKKKQFGWCKRIINMMMTEGCNPNPSLFNSLVHGYCNAGDYAYAYKLFNRMTTCGSPP 374

Query: 490 DAVTWRIL 497
             V + I 
Sbjct: 375 GYVAYNIF 382


>gi|218194637|gb|EEC77064.1| hypothetical protein OsI_15455 [Oryza sativa Indica Group]
          Length = 864

 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 126/494 (25%), Positives = 237/494 (47%), Gaps = 10/494 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    + +A ++   M   G  PN ++Y +LIHGY  +G  + + +VF +M  CGV
Sbjct: 267 IDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGV 326

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNA--AFANLVDSLCREG 118
           +P     +  +  + +      A  +   +  +  + + +S +     +A   DS   + 
Sbjct: 327 IPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATATDSCLAD- 385

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
            V+ +F +   + +G + N+      +I++  R G    A  +   M+ +G+ P  V++ 
Sbjct: 386 -VHNIFNLM--LTKGIAPNKH-VFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFA 441

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
           +++  LC+ G    A       +  G  PSE  Y  L++G C   +L KA++++  M++K
Sbjct: 442 TVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNK 501

Query: 239 K-DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
                  +  +  +  LC      E  +++  M+QT  +P+V+T N+++ G+C +G +EE
Sbjct: 502 DIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEE 561

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           A  +L D +A     P+   + T++ G    GRI +AL + ++ M  +G  P  V Y+ +
Sbjct: 562 AFALL-DAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTV-FRDMLHKGVKPTSVLYSII 619

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 417
           L GLF+ RR   AK++F+ M+  G      TY +V+ GLC +N  DEA    + +   + 
Sbjct: 620 LHGLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNV 679

Query: 418 IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQ 477
             D   +  +I  + + G+  EA      +   G+ PNI  Y+++I    K     EA  
Sbjct: 680 KFDIITFNIVISAMFKVGRRQEAKELFDAISTYGLVPNIQTYSMMITNLIKEESYEEADN 739

Query: 478 ILREMRKNGLNPDA 491
           +   + K+G   D+
Sbjct: 740 LFISVEKSGHASDS 753



 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 116/491 (23%), Positives = 240/491 (48%), Gaps = 8/491 (1%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
            V +AH LF +M  +G +P ++   ++I   C+  EMD A  +  +M   G+ P+  TYS
Sbjct: 205 EVDKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYS 264

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
           +++ G+ +++ +++A     ++ E+M E      N+  + +L+      G  NE  R+ +
Sbjct: 265 LIIDGLCKSKAMDKAE----RVLEQMVEA-GTRPNSITYNSLIHGYSISGMWNESVRVFK 319

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKH- 187
            M     +     C   I +L + GR + A  +   M  +G  P ++SY++++HG     
Sbjct: 320 QMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATAT 379

Query: 188 GGCMR-AYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRI 246
             C+   + +    +  G  P++H + +L+        ++KA  + + M +K  +  T  
Sbjct: 380 DSCLADVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVT 439

Query: 247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV 306
               + +LC I    + L+    M+     P       +I G C  G + +A +++++M+
Sbjct: 440 FATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMM 499

Query: 307 AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 366
                 P    F++II  L   GR+ E  +++  +M Q G  P +VT+N+++ G   +  
Sbjct: 500 NKDIPPPGVKYFSSIINNLCKEGRVAEGKDIM-DMMVQTGQRPNVVTFNSLMEGYCLVGN 558

Query: 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAA 426
           +EEA  + + M  IG+  +   Y  ++DG C++ ++D+A   + D++       + +Y+ 
Sbjct: 559 MEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSI 618

Query: 427 MIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG 486
           ++ GL ++ +   A    +E+++SG T +I  Y VV+ G C+ +   EA  +L ++    
Sbjct: 619 ILHGLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMN 678

Query: 487 LNPDAVTWRIL 497
           +  D +T+ I+
Sbjct: 679 VKFDIITFNIV 689



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 112/481 (23%), Positives = 213/481 (44%), Gaps = 52/481 (10%)

Query: 23  RGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVER 82
           R   P + +Y  LI  Y R    D+   +   +   G+ P+  +YS L+ G ++  +V++
Sbjct: 150 RHSPPTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLGPDDFSYS-LIYGFVKDGEVDK 208

Query: 83  ANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFAC 142
           A+ L  ++ E                        +G + ++                  C
Sbjct: 209 AHCLFLEMME------------------------QGVLPKIL----------------IC 228

Query: 143 GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQ 202
             +I  LC+      A  +V  M   G+ P L +Y+ I+ GLCK     +A ++LE+ ++
Sbjct: 229 NSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVE 288

Query: 203 FGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTE 262
            G  P+  TY  L+ G        ++ +V + M S   +     CN ++ AL       E
Sbjct: 289 AGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNE 348

Query: 263 LLNVLVFMLQTQCQPDVITLNTVINGFCKMGR--IEEALKVLNDMVAGKFCAPDAVTFTT 320
              +   M+    +PD+I+ +T+++G+       + +   + N M+  K  AP+   F  
Sbjct: 349 AKCIFDSMVLKGPKPDIISYSTMLHGYATATDSCLADVHNIFNLMLT-KGIAPNKHVFNI 407

Query: 321 IIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI 380
           +I      G + +A+ L+++ M  +G  P  VT+  V+  L R+ R+++A   FN M+ I
Sbjct: 408 LINAYARCGMMDKAM-LIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDI 466

Query: 381 GVVADSTTYAIVIDGLCESNQLDEAKRFWDDI----VWPSNIHDNYVYAAMIKGLCRSGK 436
           GV      Y  +I G C   +L +AK    ++    + P  +     ++++I  LC+ G+
Sbjct: 467 GVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVK---YFSSIINNLCKEGR 523

Query: 437 IHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRI 496
           + E    +  +V +G  PN+V +N +++G C +    EA+ +L  M   G+ P+   +  
Sbjct: 524 VAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGT 583

Query: 497 L 497
           L
Sbjct: 584 L 584



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 92/193 (47%), Gaps = 2/193 (1%)

Query: 297 EALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
           E  K ++     +   P   T+  +I     V R    L ++ +++ + G  P   +Y +
Sbjct: 138 ELFKRMDRWACPRHSPPTIHTYNILIDCYRRVHRPDLGLAIVGRLL-KNGLGPDDFSY-S 195

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416
           ++ G  +   V++A  +F  M+  GV+        +I  LC+  ++D+A+     +V   
Sbjct: 196 LIYGFVKDGEVDKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSG 255

Query: 417 NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAY 476
              D + Y+ +I GLC+S  + +A   L ++V++G  PN + YN +I G     M  E+ 
Sbjct: 256 IAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESV 315

Query: 477 QILREMRKNGLNP 489
           ++ ++M   G+ P
Sbjct: 316 RVFKQMSSCGVIP 328


>gi|414881815|tpg|DAA58946.1| TPA: hypothetical protein ZEAMMB73_360564 [Zea mays]
          Length = 792

 Score =  188 bits (478), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 148/539 (27%), Positives = 249/539 (46%), Gaps = 44/539 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMK-SRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCG 59
           +D L  + R+ EA +L   M  + G   +VV  T L+HGYC  GE+  A  +FDE+   G
Sbjct: 262 VDVLVKVRRMDEALRLKDQMLLATGKKMDVVLATMLMHGYCLNGEVGKALDLFDEVVSDG 321

Query: 60  VLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGY 119
           V P ++TY VL++G     D E      +KL  +M E+  L  +   F  ++  L R+  
Sbjct: 322 VTPTNVTYGVLIKGC----DAEGMTDETYKLCRQMIEQ-GLLPSTYEFNLVIKGLLRDKR 376

Query: 120 VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
             +   + + +     V + F  G +I  LC+  + H A  +   M++ G+ PS+V+Y+S
Sbjct: 377 WKDAIGLLK-LVVDTGVPDVFTYGCLIHWLCKHQKLHEAVNLWDKMKEAGVKPSIVTYHS 435

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++ G C+ G    A +L  E    G+ P+E TY  L++G   +   + A  +L  M    
Sbjct: 436 LLLGYCEKGRMDEALKLYSEMPDKGFPPNEVTYTTLMKGYIKKKAFDNAYALLNEMRQNG 495

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                   NI +  L ++    E+  +L   L     P  +T N++INGF K G +  A 
Sbjct: 496 VSCGDYTYNILINGLYMVNRVCEVDEMLKRFLSEGFVPTTMTYNSIINGFVKAGMMGSAF 555

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNV------------------------------- 328
            +   M   K   P+ VT+T+ I G                                   
Sbjct: 556 GMYRQM-RKKGITPNIVTYTSFIDGYCRTNCCDLAVKLLIYVRRDGIQPDIAAYNAFIDT 614

Query: 329 ----GRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 384
               G +  AL+ L  ++ + G +P +  YN+ + G   L+ + EA + +  M+   VVA
Sbjct: 615 FCKQGNMSRALHFLVLLL-KDGLTPDVTVYNSFVTGYKNLKMMAEASKFYYSMIKQRVVA 673

Query: 385 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFL 444
           D+  Y  +IDG  +   +  A   + +++    I D+  + A+  GLCRSG I  A   L
Sbjct: 674 DTEIYTTLIDGFSKVGNVAFALELYSEMMANHVIPDDKTFTALTHGLCRSGDIDGAKRLL 733

Query: 445 YELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGN 503
            ++    V+PNIV YN++I+   +    +EA+Q+  EM  +G+ PD  T+ IL + + +
Sbjct: 734 DDMRRLDVSPNIVTYNMLINACVRDGKLQEAFQLHDEMLSSGVVPDDTTYDILPRTNNS 792



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 133/490 (27%), Positives = 237/490 (48%), Gaps = 13/490 (2%)

Query: 8   SRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTY 67
           +   +A  LF +M+ +G   +   Y  +I    R G    A ++FDEM   GV P+   Y
Sbjct: 164 ASAADALTLFDEMRGKGCYADAKMYDVVIRACVRGGMHCDAVRLFDEMAGAGVKPDERVY 223

Query: 68  SVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIA 127
           ++ + G+ + RD +RA  ++ K+ E   E  +L+     ++++VD L +   ++E  R+ 
Sbjct: 224 AITISGLCKLRDADRALQVLGKMREAGFEPWELT-----YSSVVDVLVKVRRMDEALRLK 278

Query: 128 EDM--PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLC 185
           + M    GK ++   A   ++   C +G    A  +   +   G+TP+ V+Y  ++ G  
Sbjct: 279 DQMLLATGKKMDVVLAT-MLMHGYCLNGEVGKALDLFDEVVSDGVTPTNVTYGVLIKGCD 337

Query: 186 KHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR-T 244
             G     Y+L  + I+ G LPS + + ++++GL  +   + A  +L+ ++     D  T
Sbjct: 338 AEGMTDETYKLCRQMIEQGLLPSTYEFNLVIKGLLRDKRWKDAIGLLKLVVDTGVPDVFT 397

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
             C I+   LC  +   E +N+   M +   +P ++T ++++ G+C+ GR++EALK+ ++
Sbjct: 398 YGCLIHW--LCKHQKLHEAVNLWDKMKEAGVKPSIVTYHSLLLGYCEKGRMDEALKLYSE 455

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
           M    F  P+ VT+TT++ G +       A  LL + M Q G S G  TYN ++ GL+ +
Sbjct: 456 MPDKGF-PPNEVTYTTLMKGYIKKKAFDNAYALLNE-MRQNGVSCGDYTYNILINGLYMV 513

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY 424
            RV E  E+    L  G V  + TY  +I+G  ++  +  A   +  +       +   Y
Sbjct: 514 NRVCEVDEMLKRFLSEGFVPTTMTYNSIINGFVKAGMMGSAFGMYRQMRKKGITPNIVTY 573

Query: 425 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484
            + I G CR+     AV  L  +   G+ P+I  YN  ID  CK      A   L  + K
Sbjct: 574 TSFIDGYCRTNCCDLAVKLLIYVRRDGIQPDIAAYNAFIDTFCKQGNMSRALHFLVLLLK 633

Query: 485 NGLNPDAVTW 494
           +GL PD   +
Sbjct: 634 DGLTPDVTVY 643


>gi|356529360|ref|XP_003533262.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 594

 Score =  188 bits (477), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 137/498 (27%), Positives = 233/498 (46%), Gaps = 46/498 (9%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC + +      +   M   G  P +V+  T+++G C  G+++ A  + ++M + G   N
Sbjct: 120 LCHMRKTTLGFAVLGLMTKIGLEPTLVTLNTIVNGLCIEGDVNHALWLVEKMENLGYHCN 179

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           + TY  LV G+ +  D   A   + K+ +R     +L  N   +  ++D LC+ G V E 
Sbjct: 180 ARTYGALVNGLCKIGDTSGALECLKKMVKR-----NLGPNVVVYNAILDGLCKRGLVGEA 234

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             +  +M     VN E                                P++V+YN ++ G
Sbjct: 235 LGLLHEM---GVVNVE--------------------------------PNVVTYNCLIQG 259

Query: 184 LC-KHGGCMRAYQLLEEGI-QFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
           LC + GG      L  E + + G +P   T+ +LV+G C E  L +A  V+ FM+     
Sbjct: 260 LCGEFGGWREGVGLFNEMVAEKGIVPDVQTFSILVDGFCKEGLLLRAESVVGFMVRIGVE 319

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQ--TQCQPDVITLNTVINGFCKMGRIEEAL 299
                 N  +   CL     E + V   M++    C P V+T N++I+G+CK+  +++A+
Sbjct: 320 PNVVTYNSLIAGYCLRSQMEEAMRVFGLMVREGEGCLPSVVTHNSLIHGWCKVKEVDKAM 379

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
            +L++MV GK   PD  T+T++I G   V +   A  L +  M + G  P + T   VL 
Sbjct: 380 SLLSEMV-GKGLDPDVFTWTSLIGGFCEVKKPLAARELFF-TMKEHGQVPNLQTCAVVLD 437

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
           GL +     EA  +F  M+  G+  D   Y I++DG+C+  +L++A++    ++      
Sbjct: 438 GLLKCWLDSEAVTLFRAMMKSGLDLDIVIYNIMLDGMCKMGKLNDARKLLSCVLVKGLKI 497

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           D+Y Y  MIKGLCR G + +A   L ++ ++G  PN   YNV + G  +      + + L
Sbjct: 498 DSYTYNIMIKGLCREGLLDDAEELLRKMKENGCPPNKCSYNVFVQGLLRKYDIARSRKYL 557

Query: 480 REMRKNGLNPDAVTWRIL 497
           + M+  G   DA T  +L
Sbjct: 558 QIMKDKGFPVDATTAELL 575



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 116/395 (29%), Positives = 191/395 (48%), Gaps = 41/395 (10%)

Query: 109 NLVDSLCREGYVNEVFRIAEDMPQ-GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRK 167
            +V+ LC EG VN    + E M   G   N     G +++ LC+ G   GA   +  M K
Sbjct: 150 TIVNGLCIEGDVNHALWLVEKMENLGYHCNAR-TYGALVNGLCKIGDTSGALECLKKMVK 208

Query: 168 RGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGE-SDLE 226
           R L P++V YN+I+ GLCK G    A  LL E       P+  TY  L++GLCGE     
Sbjct: 209 RNLGPNVVVYNAILDGLCKRGLVGEALGLLHEMGVVNVEPNVVTYNCLIQGLCGEFGGWR 268

Query: 227 KARKVLQFMLSKKD-VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTV 285
           +   +   M+++K  V   +  +I +   C         +V+ FM++   +P+V+T N++
Sbjct: 269 EGVGLFNEMVAEKGIVPDVQTFSILVDGFCKEGLLLRAESVVGFMVRIGVEPNVVTYNSL 328

Query: 286 INGFCKMGRIEEALKVLNDMV-AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ 344
           I G+C   ++EEA++V   MV  G+ C P  VT  ++I G   V  + +A++LL + M  
Sbjct: 329 IAGYCLRSQMEEAMRVFGLMVREGEGCLPSVVTHNSLIHGWCKVKEVDKAMSLLSE-MVG 387

Query: 345 RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 404
           +G  P + T+ +++ G   +++   A+E+F  M   G V +  T A+V+DGL +      
Sbjct: 388 KGLDPDVFTWTSLIGGFCEVKKPLAARELFFTMKEHGQVPNLQTCAVVLDGLLKC----- 442

Query: 405 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
               W D                           EAV     ++ SG+  +IV YN+++D
Sbjct: 443 ----WLD--------------------------SEAVTLFRAMMKSGLDLDIVIYNIMLD 472

Query: 465 GACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
           G CK+    +A ++L  +   GL  D+ T+ I+ K
Sbjct: 473 GMCKMGKLNDARKLLSCVLVKGLKIDSYTYNIMIK 507



 Score =  137 bits (346), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 108/410 (26%), Positives = 185/410 (45%), Gaps = 7/410 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC +     A +    M  R   PNVV Y  ++ G C+ G +  A  +  EM    V
Sbjct: 187 VNGLCKIGDTSGALECLKKMVKRNLGPNVVVYNAILDGLCKRGLVGEALGLLHEMGVVNV 246

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +TY+ L++G+       R  V +F     M  E+ +  +   F+ LVD  C+EG +
Sbjct: 247 EPNVVTYNCLIQGLCGEFGGWREGVGLFN---EMVAEKGIVPDVQTFSILVDGFCKEGLL 303

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRK--RGLTPSLVSYN 178
                +   M +            +I   C   +   A RV  +M +   G  PS+V++N
Sbjct: 304 LRAESVVGFMVRIGVEPNVVTYNSLIAGYCLRSQMEEAMRVFGLMVREGEGCLPSVVTHN 363

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
           S++HG CK     +A  LL E +  G  P   T+  L+ G C       AR++   M   
Sbjct: 364 SLIHGWCKVKEVDKAMSLLSEMVGKGLDPDVFTWTSLIGGFCEVKKPLAARELFFTMKEH 423

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
             V   + C + L  L      +E + +   M+++    D++  N +++G CKMG++ +A
Sbjct: 424 GQVPNLQTCAVVLDGLLKCWLDSEAVTLFRAMMKSGLDLDIVIYNIMLDGMCKMGKLNDA 483

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
            K+L+ ++  K    D+ T+  +I GL   G + +A  LL + M + G  P   +YN  +
Sbjct: 484 RKLLSCVLV-KGLKIDSYTYNIMIKGLCREGLLDDAEELLRK-MKENGCPPNKCSYNVFV 541

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRF 408
           +GL R   +  +++    M   G   D+TT  ++I  L  + +    K F
Sbjct: 542 QGLLRKYDIARSRKYLQIMKDKGFPVDATTAELLIRFLSANEEDKSFKEF 591



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 81/178 (45%), Gaps = 1/178 (0%)

Query: 321 IIFGLLNVGRIQEALNLLYQVMPQRG-YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
           ++FGL+   +       L +++   G  S  + T N  +  L  +R+      V   M  
Sbjct: 79  LLFGLVAKSQHYATAISLIKILHSLGDGSADVCTLNIAINCLCHMRKTTLGFAVLGLMTK 138

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
           IG+     T   +++GLC    ++ A    + +       +   Y A++ GLC+ G    
Sbjct: 139 IGLEPTLVTLNTIVNGLCIEGDVNHALWLVEKMENLGYHCNARTYGALVNGLCKIGDTSG 198

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           A+  L ++V   + PN+V YN ++DG CK  +  EA  +L EM    + P+ VT+  L
Sbjct: 199 ALECLKKMVKRNLGPNVVVYNAILDGLCKRGLVGEALGLLHEMGVVNVEPNVVTYNCL 256


>gi|242065566|ref|XP_002454072.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
 gi|241933903|gb|EES07048.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
          Length = 820

 Score =  188 bits (477), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 134/492 (27%), Positives = 214/492 (43%), Gaps = 46/492 (9%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C   ++  A  LF  M  RG   + VSY  LI G+C TG +D A ++F E+      P+ 
Sbjct: 175 CRTQQLDVAQDLFDKMPLRGFSQDAVSYAALIEGFCETGRVDEALELFRELEQ----PDM 230

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
            T++ LV+G+   R  E    ++ K+     +E        A+A LVD  CRE    E  
Sbjct: 231 YTHAALVKGLCDARRGEEGLYMLQKM-----KELGWRPATRAYAALVDLWCREQKAEEAE 285

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
           ++  +M     V     C  ++++ CR GR  GA RV   M+ +G  P++ +YN++V G 
Sbjct: 286 KMLNEMFDNGLVPCAVTCTAVVNAYCREGRMSGAVRVFESMKLKGCEPNVWTYNAMVQGF 345

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
           C  G   +A  LL++  + G  P   TY +L+ G C +  +E A ++L+ M         
Sbjct: 346 CNVGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQCIDGHIESAFRLLRLMEGNG----- 400

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
                                            D  T N +I+  CK G+++EA  +  D
Sbjct: 401 ------------------------------LAADQYTYNVLIDALCKTGKVDEACSLF-D 429

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
            +  +   P++VTF T+I GL   G+   A   L + M   G +P   TY+  +  L + 
Sbjct: 430 GLEYRGIRPNSVTFNTVINGLCKGGKFDVACTFL-EKMVSAGCAPDTYTYSPFIENLCKT 488

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY 424
           +   E     + ML   V   +  Y IVID L +      A R W  +V      D   Y
Sbjct: 489 KGSREGLSFIDEMLQKDVKPSTVNYTIVIDRLFKERNYGLATRIWGQMVSLGCSPDVVTY 548

Query: 425 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484
              ++  C  G++HEA + + E+   G+  + + YN +IDG   +     A  IL+ M  
Sbjct: 549 TTSVRAYCNEGRLHEAENVVMEMKKGGIIVDAMAYNTLIDGHTSIGKTDHAVTILKHMTG 608

Query: 485 NGLNPDAVTWRI 496
               P+  T+ I
Sbjct: 609 VASMPNHFTFFI 620



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 130/516 (25%), Positives = 228/516 (44%), Gaps = 29/516 (5%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C   +  EA K+  +M   G VP  V+ T +++ YCR G M  A +VF+ M+  G 
Sbjct: 272 VDLWCREQKAEEAEKMLNEMFDNGLVPCAVTCTAVVNAYCREGRMSGAVRVFESMKLKGC 331

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKE---EEDLSVNNAAFANLVDSLCRE 117
            PN  TY+ +V+G      V +A  L+    ++M+E   E D+   N     L+   C +
Sbjct: 332 EPNVWTYNAMVQGFCNVGKVYKAMALL----DQMRECGVEPDVVTYNL----LIRGQCID 383

Query: 118 GYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
           G++   FR+   M       +++    +ID+LC++G+   A  +   +  RG+ P+ V++
Sbjct: 384 GHIESAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTF 443

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
           N++++GLCK G    A   LE+ +  G  P  +TY   +E LC      +    +  ML 
Sbjct: 444 NTVINGLCKGGKFDVACTFLEKMVSAGCAPDTYTYSPFIENLCKTKGSREGLSFIDEMLQ 503

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
           K     T    I +  L   +N      +   M+   C PDV+T  T +  +C  GR+ E
Sbjct: 504 KDVKPSTVNYTIVIDRLFKERNYGLATRIWGQMVSLGCSPDVVTYTTSVRAYCNEGRLHE 563

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTY--- 354
           A  V+ +M  G     DA+ + T+I G  ++G+   A+ +L   M      P   T+   
Sbjct: 564 AENVVMEMKKGGIIV-DAMAYNTLIDGHTSIGKTDHAVTILKH-MTGVASMPNHFTFFIL 621

Query: 355 -----------NAVLRGLFRLRRVEEAK--EVFNCMLGIGVVADSTTYAIVIDGLCESNQ 401
                      +  L+     + +E A   E+F  M    V + +  Y  +++G  E  +
Sbjct: 622 LRHLLQRRLAEDVPLKTTSVWKTIELADVFELFELMKKNSVPSSARAYLAILEGFSEERR 681

Query: 402 LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNV 461
           LDE       +       +  +Y +++   C+     +A   L  ++  G  PN++ Y  
Sbjct: 682 LDEVTSLVSHMKEDDLPLNEDIYTSLVNCFCKLRMYPDAWALLCSMIGHGFLPNLISYQY 741

Query: 462 VIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           ++ G         A +I R +R    N D + W+I+
Sbjct: 742 LLSGFTAEGQADRAKEIFRGLRWKEYNTDEIVWKII 777



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 122/428 (28%), Positives = 197/428 (46%), Gaps = 7/428 (1%)

Query: 86  LMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHM 145
           LM +L+  M      +   A +  L+ +LCR   +    R    M +     + F    +
Sbjct: 111 LMLRLFAHMYHHGPPAPTGATYNALIRALCRRADLRHAQRYLSLMVRSGWRPDAFTFNSL 170

Query: 146 IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY 205
           I   CR+ +   A  +   M  RG +   VSY +++ G C+ G    A +L  E  Q   
Sbjct: 171 ILGYCRTQQLDVAQDLFDKMPLRGFSQDAVSYAALIEGFCETGRVDEALELFRELEQ--- 227

Query: 206 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 265
            P  +T+  LV+GLC     E+   +LQ M        TR     +   C  +   E   
Sbjct: 228 -PDMYTHAALVKGLCDARRGEEGLYMLQKMKELGWRPATRAYAALVDLWCREQKAEEAEK 286

Query: 266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 325
           +L  M      P  +T   V+N +C+ GR+  A++V   M   K C P+  T+  ++ G 
Sbjct: 287 MLNEMFDNGLVPCAVTCTAVVNAYCREGRMSGAVRVFESMKL-KGCEPNVWTYNAMVQGF 345

Query: 326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 385
            NVG++ +A+ LL Q M + G  P +VTYN ++RG      +E A  +   M G G+ AD
Sbjct: 346 CNVGKVYKAMALLDQ-MRECGVEPDVVTYNLLIRGQCIDGHIESAFRLLRLMEGNGLAAD 404

Query: 386 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY 445
             TY ++ID LC++ ++DEA   +D + +     ++  +  +I GLC+ GK   A  FL 
Sbjct: 405 QYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLCKGGKFDVACTFLE 464

Query: 446 ELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRI-LDKLHGNR 504
           ++V +G  P+   Y+  I+  CK    RE    + EM +  + P  V + I +D+L   R
Sbjct: 465 KMVSAGCAPDTYTYSPFIENLCKTKGSREGLSFIDEMLQKDVKPSTVNYTIVIDRLFKER 524

Query: 505 GNDFGLRI 512
                 RI
Sbjct: 525 NYGLATRI 532



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 128/494 (25%), Positives = 218/494 (44%), Gaps = 51/494 (10%)

Query: 15  KLFFDMKSRGH-VPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRG 73
           +LF  M   G   P   +Y  LI   CR  ++  A +    M   G  P++ T++ L+ G
Sbjct: 114 RLFAHMYHHGPPAPTGATYNALIRALCRRADLRHAQRYLSLMVRSGWRPDAFTFNSLILG 173

Query: 74  VLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQG 133
             RT+ ++ A  L  K+  R       S +  ++A L++  C  G V+E   +  ++ Q 
Sbjct: 174 YCRTQQLDVAQDLFDKMPLR-----GFSQDAVSYAALIEGFCETGRVDEALELFRELEQ- 227

Query: 134 KSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRA 193
                                                 P + ++ ++V GLC        
Sbjct: 228 --------------------------------------PDMYTHAALVKGLCDARRGEEG 249

Query: 194 YQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRA 253
             +L++  + G+ P+   Y  LV+  C E   E+A K+L  M     V     C   + A
Sbjct: 250 LYMLQKMKELGWRPATRAYAALVDLWCREQKAEEAEKMLNEMFDNGLVPCAVTCTAVVNA 309

Query: 254 LCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCA- 312
            C     +  + V   M    C+P+V T N ++ GFC +G++ +A+ +L+ M   + C  
Sbjct: 310 YCREGRMSGAVRVFESMKLKGCEPNVWTYNAMVQGFCNVGKVYKAMALLDQM---RECGV 366

Query: 313 -PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK 371
            PD VT+  +I G    G I+ A  LL ++M   G +    TYN ++  L +  +V+EA 
Sbjct: 367 EPDVVTYNLLIRGQCIDGHIESAFRLL-RLMEGNGLAADQYTYNVLIDALCKTGKVDEAC 425

Query: 372 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 431
            +F+ +   G+  +S T+  VI+GLC+  + D A  F + +V      D Y Y+  I+ L
Sbjct: 426 SLFDGLEYRGIRPNSVTFNTVINGLCKGGKFDVACTFLEKMVSAGCAPDTYTYSPFIENL 485

Query: 432 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 491
           C++    E + F+ E++   V P+ V Y +VID   K      A +I  +M   G +PD 
Sbjct: 486 CKTKGSREGLSFIDEMLQKDVKPSTVNYTIVIDRLFKERNYGLATRIWGQMVSLGCSPDV 545

Query: 492 VTWRILDKLHGNRG 505
           VT+    + + N G
Sbjct: 546 VTYTTSVRAYCNEG 559



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 114/485 (23%), Positives = 199/485 (41%), Gaps = 64/485 (13%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C   R+  A ++F  MK +G  PNV +Y  ++ G+C  G++  A  + D+MR CGV P+ 
Sbjct: 311 CREGRMSGAVRVFESMKLKGCEPNVWTYNAMVQGFCNVGKVYKAMALLDQMRECGVEPDV 370

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           +TY++L+RG      +E A  L+     R+ E   L+ +   +  L+D+LC+ G V+E  
Sbjct: 371 VTYNLLIRGQCIDGHIESAFRLL-----RLMEGNGLAADQYTYNVLIDALCKTGKVDEAC 425

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
            + + +              +I+ LC+ G+   A   +  M   G  P   +Y+  +  L
Sbjct: 426 SLFDGLEYRGIRPNSVTFNTVINGLCKGGKFDVACTFLEKMVSAGCAPDTYTYSPFIENL 485

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
           CK  G       ++E +Q    PS   Y ++++ L  E +   A ++   M+S       
Sbjct: 486 CKTKGSREGLSFIDEMLQKDVKPSTVNYTIVIDRLFKERNYGLATRIWGQMVSLGCSPDV 545

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
                 +RA C      E  NV++ M +     D +  NT+I+G   +G+ + A+ +L  
Sbjct: 546 VTYTTSVRAYCNEGRLHEAENVVMEMKKGGIIVDAMAYNTLIDGHTSIGKTDHAVTILKH 605

Query: 305 MVAGKFCAPDAVTF-------------------TTIIFGLLNVGRIQEALNLLYQVMPQR 345
           M  G    P+  TF                   TT ++  + +  + E    L+++M + 
Sbjct: 606 MT-GVASMPNHFTFFILLRHLLQRRLAEDVPLKTTSVWKTIELADVFE----LFELMKKN 660

Query: 346 GYSPGIVTYNAVLRGLFRLRRVEEAKEVF-------------------NC---------- 376
                   Y A+L G    RR++E   +                    NC          
Sbjct: 661 SVPSSARAYLAILEGFSEERRLDEVTSLVSHMKEDDLPLNEDIYTSLVNCFCKLRMYPDA 720

Query: 377 ------MLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKG 430
                 M+G G + +  +Y  ++ G     Q D AK  +  + W     D  V+  +I G
Sbjct: 721 WALLCSMIGHGFLPNLISYQYLLSGFTAEGQADRAKEIFRGLRWKEYNTDEIVWKIIIDG 780

Query: 431 LCRSG 435
           L R G
Sbjct: 781 LIRQG 785



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/295 (20%), Positives = 127/295 (43%), Gaps = 25/295 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D+L      G A +++  M S G  P+VV+YTT +  YC  G +  A  V  EM+  G+
Sbjct: 517 IDRLFKERNYGLATRIWGQMVSLGCSPDVVTYTTSVRAYCNEGRLHEAENVVMEMKKGGI 576

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLM------------FKLW------ERMKEEEDLSV 102
           + +++ Y+ L+ G       + A  ++            F  +       + +  ED+ +
Sbjct: 577 IVDAMAYNTLIDGHTSIGKTDHAVTILKHMTGVASMPNHFTFFILLRHLLQRRLAEDVPL 636

Query: 103 NNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVV 162
              +    ++       + +VF + E M +    +   A   +++      R    + +V
Sbjct: 637 KTTSVWKTIE-------LADVFELFELMKKNSVPSSARAYLAILEGFSEERRLDEVTSLV 689

Query: 163 YVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGE 222
             M++  L  +   Y S+V+  CK      A+ LL   I  G+LP+  +Y+ L+ G   E
Sbjct: 690 SHMKEDDLPLNEDIYTSLVNCFCKLRMYPDAWALLCSMIGHGFLPNLISYQYLLSGFTAE 749

Query: 223 SDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQP 277
              ++A+++ + +  K+      +  I +  L    +P    +++  + Q +C+P
Sbjct: 750 GQADRAKEIFRGLRWKEYNTDEIVWKIIIDGLIRQGHPDMCHDMISILEQMKCKP 804



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 57/264 (21%), Positives = 102/264 (38%), Gaps = 52/264 (19%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C   R+ EA  +  +MK  G + + ++Y TLI G+   G+ D A  +   M     +PN 
Sbjct: 556 CNEGRLHEAENVVMEMKKGGIIVDAMAYNTLIDGHTSIGKTDHAVTILKHMTGVASMPNH 615

Query: 65  LTY--------------SVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANL 110
            T+               V ++     + +E A+V  F+L+E MK+    S   A  A +
Sbjct: 616 FTFFILLRHLLQRRLAEDVPLKTTSVWKTIELADV--FELFELMKKNSVPSSARAYLA-I 672

Query: 111 VDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGL 170
           ++    E  ++EV  +   M +      E     +++  C+      A  ++  M   G 
Sbjct: 673 LEGFSEERRLDEVTSLVSHMKEDDLPLNEDIYTSLVNCFCKLRMYPDAWALLCSMIGHGF 732

Query: 171 TPSLVSYNSIVHGLCKHGGCMRA------------------YQLLEEGI----------- 201
            P+L+SY  ++ G    G   RA                  ++++ +G+           
Sbjct: 733 LPNLISYQYLLSGFTAEGQADRAKEIFRGLRWKEYNTDEIVWKIIIDGLIRQGHPDMCHD 792

Query: 202 ------QFGYLPSEHTYKVLVEGL 219
                 Q    PS+ TY +L E L
Sbjct: 793 MISILEQMKCKPSDETYAMLTEEL 816


>gi|147866209|emb|CAN83683.1| hypothetical protein VITISV_017537 [Vitis vinifera]
          Length = 833

 Score =  188 bits (477), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 128/474 (27%), Positives = 230/474 (48%), Gaps = 43/474 (9%)

Query: 33  TTLIHGYCRTGEMDVAYKVFDEM-RHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLW 91
           T+L+   CR  ++  A++VF++M +     PNS+TYS+L+ G+     +E A    F+L 
Sbjct: 167 TSLVLANCRRDDLGEAFRVFEKMSKEESCRPNSVTYSILIHGLCEAGRLEEA----FQLK 222

Query: 92  ERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCR 151
           + M E+     +   +  L+ + C  G  ++  ++ ++M     V        +ID LCR
Sbjct: 223 QEMVEK-GCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCR 281

Query: 152 SGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHT 211
            G+   A+ V   M K GL P ++++N++++G CK G  + A+QLL    +    P+  T
Sbjct: 282 EGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRT 341

Query: 212 YKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFML 271
           Y  L+EGLC  S   KA     F+L ++ VD   +                         
Sbjct: 342 YNELMEGLCRVSKSYKA-----FLLLRRVVDNGLL------------------------- 371

Query: 272 QTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRI 331
                PD +T N +++GFCK G++  A  + N M +     PD  TFT +I GL  +GR+
Sbjct: 372 -----PDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGL-EPDGFTFTALIDGLCKLGRL 425

Query: 332 QEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAI 391
           ++A N +   M ++G S   VT+ A++ G  ++ + ++   +F  M+    +  + T+  
Sbjct: 426 EQA-NGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNC 484

Query: 392 VIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 451
            +D L +  +L+EA      ++    +     +  +I+G CR+G+   ++  L  +  +G
Sbjct: 485 FLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAG 544

Query: 452 VTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
            +PN+  Y ++I+G C      EA  IL  M   G++P+  T+ +L K H   G
Sbjct: 545 CSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAG 598



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 146/535 (27%), Positives = 234/535 (43%), Gaps = 51/535 (9%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R+ EA +L  +M  +G  P+  +YT LI   C  G  D A K+ DEM     +PN
Sbjct: 209 LCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPN 268

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             TY++L+  + R   +E AN +  K+ +       L      F  L++  C+EG+V   
Sbjct: 269 VHTYTILIDRLCREGKIEEANGVFRKMLKH-----GLCPGIITFNALINGYCKEGWVVSA 323

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           F++   M +G           +++ LCR  +++ A  ++  +   GL P  V+YN +V G
Sbjct: 324 FQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDG 383

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK----- 238
            CK G    A+ +       G  P   T+  L++GLC    LE+A  +L  M+ K     
Sbjct: 384 FCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLD 443

Query: 239 -----------------KDV-------------DRTRICNIYLRALCLIKNPTELLNVLV 268
                            KDV                   N +L AL       E   +L 
Sbjct: 444 EVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLG 503

Query: 269 FMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNV 328
            M++    P V+T   +I G C+ G    +LK+L  M     C+P+  T+T II GL N 
Sbjct: 504 KMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAG-CSPNVYTYTIIINGLCNN 562

Query: 329 GRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTT 388
           GR++EA  +L+  M   G SP   TY  +++   +  R++ A ++ + M+  G   +S  
Sbjct: 563 GRVEEAETILFS-MSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHI 621

Query: 389 YAIVIDGLCESNQLDEAKRF-----WDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
           Y+ ++ G   SN    A+        D     S  +DN   ++ +    R   +  A+  
Sbjct: 622 YSALLSGFVLSNTAIGARALSSTGDLDARSLSSEENDNNCLSSHVF---RLMDVDHALKI 678

Query: 444 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILD 498
             E+   GV P    YN ++ G CK     EA Q+ ++M K+GL PD     I++
Sbjct: 679 RDEIKKCGV-PTEDLYNFLVVGLCKEGRIIEADQLTQDMVKHGLFPDKAISSIIE 732



 Score =  164 bits (416), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 128/528 (24%), Positives = 233/528 (44%), Gaps = 47/528 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D+LC   ++ EA+ +F  M   G  P ++++  LI+GYC+ G +  A+++   M     
Sbjct: 276 IDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNC 335

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN  TY+ L+ G+ R     +A +L+     R   +  L  +   +  LVD  C+EG +
Sbjct: 336 KPNIRTYNELMEGLCRVSKSYKAFLLL-----RRVVDNGLLPDRVTYNILVDGFCKEGQL 390

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           N  F I   M       + F    +ID LC+ GR   A+ ++  M K+G++   V++ ++
Sbjct: 391 NMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTAL 450

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G CK G       L E  ++   L + HT+   ++ L  +  L +A  +L  M+    
Sbjct: 451 IDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGL 510

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           V       I +   C        L +L  M Q  C P+V T   +ING C  GR+EEA  
Sbjct: 511 VPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAET 570

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +L  M +    +P+  T+  ++   +  GR+  A  ++   M + G  P    Y+A+L G
Sbjct: 571 ILFSMSSFGV-SPNHFTYAVLVKAHVKAGRLDRAFQIV-STMVKNGCQPNSHIYSALLSG 628

Query: 361 -------------------------------------LFRLRRVEEAKEVFNCMLGIGVV 383
                                                +FRL  V+ A ++ + +   GV 
Sbjct: 629 FVLSNTAIGARALSSTGDLDARSLSSEENDNNCLSSHVFRLMDVDHALKIRDEIKKCGVP 688

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
            +   Y  ++ GLC+  ++ EA +   D+V      D  + +++I+  C++ K    + F
Sbjct: 689 TED-LYNFLVVGLCKEGRIIEADQLTQDMVKHGLFPDKAI-SSIIEHYCKTCKYDNCLEF 746

Query: 444 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM-RKNGLNPD 490
           +  ++D+   P+   Y  VI G       +EA +++ ++ R  G+  +
Sbjct: 747 MKLVLDNKFVPSFASYCWVIHGLRNEGRVQEAQKLVSDLVRHTGIEEE 794



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 110/467 (23%), Positives = 219/467 (46%), Gaps = 8/467 (1%)

Query: 32  YTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLW 91
           Y+TL+    +     VA+ V+  M + G +   + Y  +V  + +   V+ A +   K+ 
Sbjct: 96  YSTLLMCLAKLNMGFVAFLVYRRMVNEGFVLGGIDYRTVVNALCKNGFVQAAEMFCCKVL 155

Query: 92  ERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVN-EEFACGHMIDSLC 150
                     ++     +LV + CR   + E FR+ E M + +S          +I  LC
Sbjct: 156 RL-----GFGLDTHVCTSLVLANCRRDDLGEAFRVFEKMSKEESCRPNSVTYSILIHGLC 210

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
            +GR   A ++   M ++G  PS  +Y  ++   C  G   +A ++L+E      +P+ H
Sbjct: 211 EAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVH 270

Query: 211 TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM 270
           TY +L++ LC E  +E+A  V + ML           N  +   C          +L  M
Sbjct: 271 TYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVM 330

Query: 271 LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR 330
            +  C+P++ T N ++ G C++ +  +A  +L  +V      PD VT+  ++ G    G+
Sbjct: 331 EKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGL-LPDRVTYNILVDGFCKEGQ 389

Query: 331 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYA 390
           +  A N+ +  M   G  P   T+ A++ GL +L R+E+A  +   M+  G+  D  T+ 
Sbjct: 390 LNMAFNI-FNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFT 448

Query: 391 IVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 450
            +IDG C+  +  +    ++++V    +   + +   +  L +  K++EA   L +++  
Sbjct: 449 ALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKY 508

Query: 451 GVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           G+ P++V + ++I+G C+      + ++L  M++ G +P+  T+ I+
Sbjct: 509 GLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTII 555



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 126/424 (29%), Positives = 198/424 (46%), Gaps = 14/424 (3%)

Query: 88  FKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFA-----C 142
           F ++ RM  E    +    +  +V++LC+ G+V      A +M   K +   F      C
Sbjct: 113 FLVYRRMVNE-GFVLGGIDYRTVVNALCKNGFVQ-----AAEMFCCKVLRLGFGLDTHVC 166

Query: 143 GHMIDSLCRSGRNHGASRVVYVMRKR-GLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGI 201
             ++ + CR      A RV   M K     P+ V+Y+ ++HGLC+ G    A+QL +E +
Sbjct: 167 TSLVLANCRRDDLGEAFRVFEKMSKEESCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMV 226

Query: 202 QFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPT 261
           + G  PS  TY VL++  C     +KA K+L  M +K  V       I +  LC      
Sbjct: 227 EKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIE 286

Query: 262 ELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTI 321
           E   V   ML+    P +IT N +ING+CK G +  A ++L+ M  G  C P+  T+  +
Sbjct: 287 EANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGN-CKPNIRTYNEL 345

Query: 322 IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG 381
           + GL  V +  +A  LL +V+   G  P  VTYN ++ G  +  ++  A  +FN M   G
Sbjct: 346 MEGLCRVSKSYKAFLLLRRVV-DNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAG 404

Query: 382 VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAV 441
           +  D  T+  +IDGLC+  +L++A      +V      D   + A+I G C+ GK  +  
Sbjct: 405 LEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVC 464

Query: 442 HFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLH 501
                +V++        +N  +D   K     EA  +L +M K GL P  VT  IL + H
Sbjct: 465 FLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGH 524

Query: 502 GNRG 505
              G
Sbjct: 525 CRAG 528



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 112/276 (40%), Gaps = 54/276 (19%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   RV EA  + F M S G  PN  +Y  L+  + + G +D A+++   M   G 
Sbjct: 556 INGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGC 615

Query: 61  LPNSLTYSVLVRG-------------------------------------VLRTRDVERA 83
            PNS  YS L+ G                                     V R  DV+ A
Sbjct: 616 QPNSHIYSALLSGFVLSNTAIGARALSSTGDLDARSLSSEENDNNCLSSHVFRLMDVDHA 675

Query: 84  NVLMFKLWERMKE----EEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
                K+ + +K+     EDL      +  LV  LC+EG + E  ++ +DM +   +  +
Sbjct: 676 ----LKIRDEIKKCGVPTEDL------YNFLVVGLCKEGRIIEADQLTQDMVK-HGLFPD 724

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
            A   +I+  C++ +       + ++      PS  SY  ++HGL   G    A +L+ +
Sbjct: 725 KAISSIIEHYCKTCKYDNCLEFMKLVLDNKFVPSFASYCWVIHGLRNEGRVQEAQKLVSD 784

Query: 200 GIQFGYLPSEHTYKVLVEGLCGES--DLEKARKVLQ 233
            ++   +  E      +E L  E   D +K  K+++
Sbjct: 785 LVRHTGIEEEVEVTPSIEFLMKEEEDDPDKCLKLIK 820


>gi|12583808|gb|AAG59660.1|AC084319_18 putative membrane-associated salt-inducible protein [Oryza sativa
           Japonica Group]
          Length = 772

 Score =  188 bits (477), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 137/502 (27%), Positives = 235/502 (46%), Gaps = 7/502 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R+ +A ++  +M  +G  P    Y  ++   CR+G    + +V + M   G   +
Sbjct: 121 LCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLD 180

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           +   ++++  +     V+ A  L+ KL     E + +S N      ++  LC      +V
Sbjct: 181 TGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNA-----VLKGLCMAKRWGDV 235

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             + ++M +            +I  LCR+G       V+  M + G TP +  Y +I+ G
Sbjct: 236 EELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDG 295

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           +CK G    A ++L     +G  P+   Y  +++GLC     ++A ++L  M  K     
Sbjct: 296 ICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLD 355

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               NI +   C       ++ +L  ML   C PDVIT  TVINGFCK G I+EA+ +L 
Sbjct: 356 DVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLK 415

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            M +   C P+ V++T ++ GL + GR  +A  L+ Q M Q+G  P  VT+N ++  L +
Sbjct: 416 SMSSCG-CKPNTVSYTIVLKGLCSAGRWVDAEELMSQ-MIQQGCPPNPVTFNTLINFLCK 473

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
              VE+A E+   ML  G   D  +Y+ VIDGL ++ + +EA    + +V      +  +
Sbjct: 474 KGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTII 533

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y+++   L R G++++ +     + D+ +  + V YN VI   CK      A      M 
Sbjct: 534 YSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMV 593

Query: 484 KNGLNPDAVTWRILDKLHGNRG 505
            NG  P+  T+ +L K   + G
Sbjct: 594 SNGCMPNESTYTMLIKGLASEG 615



 Score =  181 bits (459), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 122/451 (27%), Positives = 216/451 (47%), Gaps = 7/451 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ +C    V EA  L   +   G   ++VSY  ++ G C         ++ DEM     
Sbjct: 188 LNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDC 247

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +T++ L+  + R    ER + ++ ++      E   + +   +A ++D +C+EG++
Sbjct: 248 APNIVTFNTLIGYLCRNGLFERVHEVLAQM-----SEHGCTPDIRMYATIIDGICKEGHL 302

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                I   MP             ++  LC + R   A  ++  M ++      V++N +
Sbjct: 303 EVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNIL 362

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           V   C++G   R  +LLE+ +  G +P   TY  ++ G C E  +++A  +L+ M S   
Sbjct: 363 VDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGC 422

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
              T    I L+ LC      +   ++  M+Q  C P+ +T NT+IN  CK G +E+A++
Sbjct: 423 KPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIE 482

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +L  M+    C+PD ++++T+I GL   G+ +EAL LL  VM  +G SP  + Y+++   
Sbjct: 483 LLKQMLVNG-CSPDLISYSTVIDGLGKAGKTEEALELL-NVMVNKGISPNTIIYSSIACA 540

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L R  RV +  ++F+ +    + +D+  Y  VI  LC+  + D A  F+  +V    + +
Sbjct: 541 LSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPN 600

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 451
              Y  +IKGL   G   EA   L EL   G
Sbjct: 601 ESTYTMLIKGLASEGLAKEAQELLSELCSRG 631



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 116/475 (24%), Positives = 222/475 (46%), Gaps = 28/475 (5%)

Query: 29  VVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGV-LRTRDVERANVLM 87
           VV+Y  ++ GYCR G++  A ++   +    V PN+ T+  +VRG+  R R  +   VL 
Sbjct: 79  VVAYNAMVAGYCRAGQLAAARRLAAAVP---VPPNAYTFFPVVRGLCTRGRIADALEVL- 134

Query: 88  FKLWERMKEEEDLSVNNAA-----FANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFAC 142
                     +++S    A     +  ++++ CR G      R+ E M       +   C
Sbjct: 135 ----------DEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNC 184

Query: 143 GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQ 202
             +++++C  G    A  ++  +   G    +VSYN+++ GLC         +L++E ++
Sbjct: 185 NLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVR 244

Query: 203 FGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCL---IKN 259
               P+  T+  L+  LC     E+  +VL  M         R+    +  +C    ++ 
Sbjct: 245 VDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEV 304

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
             E+LN    M     +P+V+  NTV+ G C   R +EA ++L++M   K C  D VTF 
Sbjct: 305 ANEILNR---MPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQ-KDCPLDDVTFN 360

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
            ++      G +   + LL Q++   G  P ++TY  V+ G  +   ++EA  +   M  
Sbjct: 361 ILVDFFCQNGLVDRVIELLEQML-SHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSS 419

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
            G   ++ +Y IV+ GLC + +  +A+     ++      +   +  +I  LC+ G + +
Sbjct: 420 CGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQ 479

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
           A+  L +++ +G +P+++ Y+ VIDG  K     EA ++L  M   G++P+ + +
Sbjct: 480 AIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIY 534



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 108/403 (26%), Positives = 186/403 (46%), Gaps = 11/403 (2%)

Query: 106 AFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVM 165
           A+  +V   CR G +    R+A  +P   +    F    ++  LC  GR   A  V+  M
Sbjct: 81  AYNAMVAGYCRAGQLAAARRLAAAVPVPPNAYTFFP---VVRGLCTRGRIADALEVLDEM 137

Query: 166 RKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDL 225
             +G  P    Y+ I+   C+ GG   + ++LE     G         +++  +C +  +
Sbjct: 138 SFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCV 197

Query: 226 EKARKVLQ---FMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITL 282
           ++A  +L+   F   + D+      N  L+ LC+ K   ++  ++  M++  C P+++T 
Sbjct: 198 DEAVGLLRKLAFFGCEADIVSY---NAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTF 254

Query: 283 NTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVM 342
           NT+I   C+ G  E   +VL  M +   C PD   + TII G+   G ++ A N +   M
Sbjct: 255 NTLIGYLCRNGLFERVHEVLAQM-SEHGCTPDIRMYATIIDGICKEGHLEVA-NEILNRM 312

Query: 343 PQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQL 402
           P  G  P +V YN VL+GL    R +EA+E+ + M       D  T+ I++D  C++  +
Sbjct: 313 PSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLV 372

Query: 403 DEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVV 462
           D      + ++    + D   Y  +I G C+ G I EAV  L  +   G  PN V Y +V
Sbjct: 373 DRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIV 432

Query: 463 IDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
           + G C      +A +++ +M + G  P+ VT+  L      +G
Sbjct: 433 LKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKG 475


>gi|115453829|ref|NP_001050515.1| Os03g0569800 [Oryza sativa Japonica Group]
 gi|113548986|dbj|BAF12429.1| Os03g0569800 [Oryza sativa Japonica Group]
          Length = 773

 Score =  188 bits (477), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 138/502 (27%), Positives = 235/502 (46%), Gaps = 7/502 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R+ +A ++  +M  +G  P    Y  ++   CR+G    + +V + M   G   +
Sbjct: 121 LCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLD 180

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           +   ++++  +     V+ A  L+ KL      E D+   NA    ++  LC      +V
Sbjct: 181 TGNCNLVLNAICEQGCVDEAVGLLRKL-AFFGCEADIVSYNA----VLKGLCMAKRWGDV 235

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             + ++M +            +I  LCR+G       V+  M + G TP +  Y +I+ G
Sbjct: 236 EELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDG 295

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           +CK G    A ++L     +G  P+   Y  +++GLC     ++A ++L  M  K     
Sbjct: 296 ICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLD 355

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               NI +   C       ++ +L  ML   C PDVIT  TVINGFCK G I+EA+ +L 
Sbjct: 356 DVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLK 415

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            M +   C P+ V++T ++ GL + GR  +A  L+ Q M Q+G  P  VT+N ++  L +
Sbjct: 416 SMSSCG-CKPNTVSYTIVLKGLCSAGRWVDAEELMSQ-MIQQGCPPNPVTFNTLINFLCK 473

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
              VE+A E+   ML  G   D  +Y+ VIDGL ++ + +EA    + +V      +  +
Sbjct: 474 KGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTII 533

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y+++   L R G++++ +     + D+ +  + V YN VI   CK      A      M 
Sbjct: 534 YSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMV 593

Query: 484 KNGLNPDAVTWRILDKLHGNRG 505
            NG  P+  T+ +L K   + G
Sbjct: 594 SNGCMPNESTYTMLIKGLASEG 615



 Score =  181 bits (459), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 122/451 (27%), Positives = 216/451 (47%), Gaps = 7/451 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ +C    V EA  L   +   G   ++VSY  ++ G C         ++ DEM     
Sbjct: 188 LNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDC 247

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +T++ L+  + R    ER + ++ ++      E   + +   +A ++D +C+EG++
Sbjct: 248 APNIVTFNTLIGYLCRNGLFERVHEVLAQM-----SEHGCTPDIRMYATIIDGICKEGHL 302

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                I   MP             ++  LC + R   A  ++  M ++      V++N +
Sbjct: 303 EVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNIL 362

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           V   C++G   R  +LLE+ +  G +P   TY  ++ G C E  +++A  +L+ M S   
Sbjct: 363 VDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGC 422

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
              T    I L+ LC      +   ++  M+Q  C P+ +T NT+IN  CK G +E+A++
Sbjct: 423 KPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIE 482

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +L  M+    C+PD ++++T+I GL   G+ +EAL LL  VM  +G SP  + Y+++   
Sbjct: 483 LLKQMLVNG-CSPDLISYSTVIDGLGKAGKTEEALELL-NVMVNKGISPNTIIYSSIACA 540

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L R  RV +  ++F+ +    + +D+  Y  VI  LC+  + D A  F+  +V    + +
Sbjct: 541 LSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPN 600

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 451
              Y  +IKGL   G   EA   L EL   G
Sbjct: 601 ESTYTMLIKGLASEGLAKEAQELLSELCSRG 631



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 116/475 (24%), Positives = 222/475 (46%), Gaps = 28/475 (5%)

Query: 29  VVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGV-LRTRDVERANVLM 87
           VV+Y  ++ GYCR G++  A ++   +    V PN+ T+  +VRG+  R R  +   VL 
Sbjct: 79  VVAYNAMVAGYCRAGQLAAARRLAAAVP---VPPNAYTFFPVVRGLCTRGRIADALEVL- 134

Query: 88  FKLWERMKEEEDLSVNNAA-----FANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFAC 142
                     +++S    A     +  ++++ CR G      R+ E M       +   C
Sbjct: 135 ----------DEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNC 184

Query: 143 GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQ 202
             +++++C  G    A  ++  +   G    +VSYN+++ GLC         +L++E ++
Sbjct: 185 NLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVR 244

Query: 203 FGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCL---IKN 259
               P+  T+  L+  LC     E+  +VL  M         R+    +  +C    ++ 
Sbjct: 245 VDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEV 304

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
             E+LN    M     +P+V+  NTV+ G C   R +EA ++L++M   K C  D VTF 
Sbjct: 305 ANEILN---RMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQ-KDCPLDDVTFN 360

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
            ++      G +   + LL Q++   G  P ++TY  V+ G  +   ++EA  +   M  
Sbjct: 361 ILVDFFCQNGLVDRVIELLEQML-SHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSS 419

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
            G   ++ +Y IV+ GLC + +  +A+     ++      +   +  +I  LC+ G + +
Sbjct: 420 CGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQ 479

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
           A+  L +++ +G +P+++ Y+ VIDG  K     EA ++L  M   G++P+ + +
Sbjct: 480 AIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIY 534



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 108/403 (26%), Positives = 186/403 (46%), Gaps = 11/403 (2%)

Query: 106 AFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVM 165
           A+  +V   CR G +    R+A  +P   +    F    ++  LC  GR   A  V+  M
Sbjct: 81  AYNAMVAGYCRAGQLAAARRLAAAVPVPPNAYTFFP---VVRGLCTRGRIADALEVLDEM 137

Query: 166 RKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDL 225
             +G  P    Y+ I+   C+ GG   + ++LE     G         +++  +C +  +
Sbjct: 138 SFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCV 197

Query: 226 EKARKVLQ---FMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITL 282
           ++A  +L+   F   + D+      N  L+ LC+ K   ++  ++  M++  C P+++T 
Sbjct: 198 DEAVGLLRKLAFFGCEADIVSY---NAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTF 254

Query: 283 NTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVM 342
           NT+I   C+ G  E   +VL  M +   C PD   + TII G+   G ++ A N +   M
Sbjct: 255 NTLIGYLCRNGLFERVHEVLAQM-SEHGCTPDIRMYATIIDGICKEGHLEVA-NEILNRM 312

Query: 343 PQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQL 402
           P  G  P +V YN VL+GL    R +EA+E+ + M       D  T+ I++D  C++  +
Sbjct: 313 PSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLV 372

Query: 403 DEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVV 462
           D      + ++    + D   Y  +I G C+ G I EAV  L  +   G  PN V Y +V
Sbjct: 373 DRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIV 432

Query: 463 IDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
           + G C      +A +++ +M + G  P+ VT+  L      +G
Sbjct: 433 LKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKG 475


>gi|15227316|ref|NP_179280.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75217061|sp|Q9ZVX5.1|PP156_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g16880
 gi|3757517|gb|AAC64219.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|18175643|gb|AAL59902.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|20465657|gb|AAM20297.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|330251452|gb|AEC06546.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 743

 Score =  188 bits (477), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 129/491 (26%), Positives = 247/491 (50%), Gaps = 18/491 (3%)

Query: 10  VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEM-RHCGVLPNSLTYS 68
           +  A ++F DM   G   NV ++  L++GYC  G+++ A  + + M     V P+++TY+
Sbjct: 185 ISSAREVFDDMVKIGVSLNVQTFNVLVNGYCLEGKLEDALGMLERMVSEFKVNPDNVTYN 244

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
            +++ + +   +     L+  +     ++  L  N   + NLV   C+ G + E F+I E
Sbjct: 245 TILKAMSKKGRLSDLKELLLDM-----KKNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVE 299

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
            M Q   + +      +I+ LC +G       ++  M+   L P +V+YN+++ G  + G
Sbjct: 300 LMKQTNVLPDLCTYNILINGLCNAGSMREGLELMDAMKSLKLQPDVVTYNTLIDGCFELG 359

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEK-ARKVLQFM----LSKKDVDR 243
             + A +L+E+    G   ++ T+ + ++ LC E   E   RKV + +     S   V  
Sbjct: 360 LSLEARKLMEQMENDGVKANQVTHNISLKWLCKEEKREAVTRKVKELVDMHGFSPDIVTY 419

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
             +   YL+    + + +  L ++  M Q   + + ITLNT+++  CK  +++EA  +LN
Sbjct: 420 HTLIKAYLK----VGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKLDEAHNLLN 475

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
                 F   D VT+ T+I G     ++++AL + +  M +   +P + T+N+++ GL  
Sbjct: 476 SAHKRGFIV-DEVTYGTLIMGFFREEKVEKALEM-WDEMKKVKITPTVSTFNSLIGGLCH 533

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
             + E A E F+ +   G++ D +T+  +I G C+  ++++A  F+++ +  S   DNY 
Sbjct: 534 HGKTELAMEKFDELAESGLLPDDSTFNSIILGYCKEGRVEKAFEFYNESIKHSFKPDNYT 593

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
              ++ GLC+ G   +A++F   L++     + V YN +I   CK    +EAY +L EM 
Sbjct: 594 CNILLNGLCKEGMTEKALNFFNTLIEEREV-DTVTYNTMISAFCKDKKLKEAYDLLSEME 652

Query: 484 KNGLNPDAVTW 494
           + GL PD  T+
Sbjct: 653 EKGLEPDRFTY 663



 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 123/477 (25%), Positives = 217/477 (45%), Gaps = 14/477 (2%)

Query: 27  PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVL 86
           P+   +   +  Y   G+  VA ++F +M    + PN LT + L+ G++R          
Sbjct: 129 PSKALFDIALSAYLHEGKPHVALQIFQKMIRLKLKPNLLTCNTLLIGLVRYPSS------ 182

Query: 87  MFKLWERMKEEEDL-----SVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVN-EEF 140
            F +    +  +D+     S+N   F  LV+  C EG + +   + E M     VN +  
Sbjct: 183 -FSISSAREVFDDMVKIGVSLNVQTFNVLVNGYCLEGKLEDALGMLERMVSEFKVNPDNV 241

Query: 141 ACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEG 200
               ++ ++ + GR      ++  M+K GL P+ V+YN++V+G CK G    A+Q++E  
Sbjct: 242 TYNTILKAMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELM 301

Query: 201 IQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNP 260
            Q   LP   TY +L+ GLC    + +  +++  M S K        N  +     +   
Sbjct: 302 KQTNVLPDLCTYNILINGLCNAGSMREGLELMDAMKSLKLQPDVVTYNTLIDGCFELGLS 361

Query: 261 TELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTT 320
            E   ++  M     + + +T N  +   CK  + E   + + ++V     +PD VT+ T
Sbjct: 362 LEARKLMEQMENDGVKANQVTHNISLKWLCKEEKREAVTRKVKELVDMHGFSPDIVTYHT 421

Query: 321 IIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI 380
           +I   L VG +  AL ++ + M Q+G     +T N +L  L + R+++EA  + N     
Sbjct: 422 LIKAYLKVGDLSGALEMMRE-MGQKGIKMNTITLNTILDALCKERKLDEAHNLLNSAHKR 480

Query: 381 GVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEA 440
           G + D  TY  +I G     ++++A   WD++           + ++I GLC  GK   A
Sbjct: 481 GFIVDEVTYGTLIMGFFREEKVEKALEMWDEMKKVKITPTVSTFNSLIGGLCHHGKTELA 540

Query: 441 VHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           +    EL +SG+ P+   +N +I G CK     +A++   E  K+   PD  T  IL
Sbjct: 541 MEKFDELAESGLLPDDSTFNSIILGYCKEGRVEKAFEFYNESIKHSFKPDNYTCNIL 597



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 105/437 (24%), Positives = 194/437 (44%), Gaps = 9/437 (2%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           R+ +  +L  DMK  G VPN V+Y  L++GYC+ G +  A+++ + M+   VLP+  TY+
Sbjct: 255 RLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTNVLPDLCTYN 314

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
           +L+ G+     + R  + +    + +K + D+      +  L+D     G   E  ++ E
Sbjct: 315 ILINGLCNAGSM-REGLELMDAMKSLKLQPDV----VTYNTLIDGCFELGLSLEARKLME 369

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVY-VMRKRGLTPSLVSYNSIVHGLCKH 187
            M        +      +  LC+  +    +R V  ++   G +P +V+Y++++    K 
Sbjct: 370 QMENDGVKANQVTHNISLKWLCKEEKREAVTRKVKELVDMHGFSPDIVTYHTLIKAYLKV 429

Query: 188 GGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC 247
           G    A +++ E  Q G   +  T   +++ LC E  L++A  +L     +  +      
Sbjct: 430 GDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKLDEAHNLLNSAHKRGFIVDEVTY 489

Query: 248 NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA 307
              +      +   + L +   M + +  P V T N++I G C  G+ E A++  +++  
Sbjct: 490 GTLIMGFFREEKVEKALEMWDEMKKVKITPTVSTFNSLIGGLCHHGKTELAMEKFDELAE 549

Query: 308 GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRV 367
                PD  TF +II G    GR+++A    Y    +  + P   T N +L GL +    
Sbjct: 550 SGLL-PDDSTFNSIILGYCKEGRVEKAFE-FYNESIKHSFKPDNYTCNILLNGLCKEGMT 607

Query: 368 EEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAM 427
           E+A   FN ++    V D+ TY  +I   C+  +L EA     ++       D + Y + 
Sbjct: 608 EKALNFFNTLIEEREV-DTVTYNTMISAFCKDKKLKEAYDLLSEMEEKGLEPDRFTYNSF 666

Query: 428 IKGLCRSGKIHEAVHFL 444
           I  L   GK+ E    L
Sbjct: 667 ISLLMEDGKLSETDELL 683



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 103/402 (25%), Positives = 182/402 (45%), Gaps = 9/402 (2%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C L  + EA ++   MK    +P++ +Y  LI+G C  G M    ++ D M+   + P+ 
Sbjct: 286 CKLGSLKEAFQIVELMKQTNVLPDLCTYNILINGLCNAGSMREGLELMDAMKSLKLQPDV 345

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           +TY+ L+ G         A     KL E+M E + +  N       +  LC+E     V 
Sbjct: 346 VTYNTLIDGCFELGLSLEAR----KLMEQM-ENDGVKANQVTHNISLKWLCKEEKREAVT 400

Query: 125 RIAEDMPQGKSVNEEFACGH-MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           R  +++      + +    H +I +  + G   GA  ++  M ++G+  + ++ N+I+  
Sbjct: 401 RKVKELVDMHGFSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDA 460

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LCK      A+ LL    + G++  E TY  L+ G   E  +EKA ++   M   K    
Sbjct: 461 LCKERKLDEAHNLLNSAHKRGFIVDEVTYGTLIMGFFREEKVEKALEMWDEMKKVKITPT 520

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               N  +  LC        +     + ++   PD  T N++I G+CK GR+E+A +  N
Sbjct: 521 VSTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDSTFNSIILGYCKEGRVEKAFEFYN 580

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           + +   F  PD  T   ++ GL   G  ++ALN    ++ +R      VTYN ++    +
Sbjct: 581 ESIKHSF-KPDNYTCNILLNGLCKEGMTEKALNFFNTLIEEREVD--TVTYNTMISAFCK 637

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA 405
            ++++EA ++ + M   G+  D  TY   I  L E  +L E 
Sbjct: 638 DKKLKEAYDLLSEMEEKGLEPDRFTYNSFISLLMEDGKLSET 679



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 99/399 (24%), Positives = 183/399 (45%), Gaps = 21/399 (5%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMD-VAYKVFDEMRHCGVLPNSLTYSVL 70
           EA KL   M++ G   N V++   +   C+  + + V  KV + +   G  P+ +TY  L
Sbjct: 363 EARKLMEQMENDGVKANQVTHNISLKWLCKEEKREAVTRKVKELVDMHGFSPDIVTYHTL 422

Query: 71  VRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDM 130
           ++  L+  D+  A  +M ++ ++      + +N      ++D+LC+E  ++E   +    
Sbjct: 423 IKAYLKVGDLSGALEMMREMGQK-----GIKMNTITLNTILDALCKERKLDEAHNLLNSA 477

Query: 131 PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGC 190
            +   + +E   G +I    R  +   A  +   M+K  +TP++ ++NS++ GLC HG  
Sbjct: 478 HKRGFIVDEVTYGTLIMGFFREEKVEKALEMWDEMKKVKITPTVSTFNSLIGGLCHHGKT 537

Query: 191 MRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIY 250
             A +  +E  + G LP + T+  ++ G C E  +EKA +     +          CNI 
Sbjct: 538 ELAMEKFDELAESGLLPDDSTFNSIILGYCKEGRVEKAFEFYNESIKHSFKPDNYTCNIL 597

Query: 251 LRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKF 310
           L  LC      + LN    +++ + + D +T NT+I+ FCK  +++EA  +L++M   K 
Sbjct: 598 LNGLCKEGMTEKALNFFNTLIEER-EVDTVTYNTMISAFCKDKKLKEAYDLLSEM-EEKG 655

Query: 311 CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEA 370
             PD  T+ + I  L+  G++ E   LL +   + G              + R  +VE  
Sbjct: 656 LEPDRFTYNSFISLLMEDGKLSETDELLKKFSGKFG-------------SMKRDLQVETE 702

Query: 371 KEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFW 409
           K          +  ++  Y+ VID LC   +L E  R +
Sbjct: 703 KNPATSESKEELNTEAIAYSDVIDELCSRGRLKEHSRSY 741



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 130/299 (43%), Gaps = 22/299 (7%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   ++ EAH L      RG + + V+Y TLI G+ R  +++ A +++DEM+   +
Sbjct: 458 LDALCKERKLDEAHNLLNSAHKRGFIVDEVTYGTLIMGFFREEKVEKALEMWDEMKKVKI 517

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKE--EEDLSVNNAAFANLVDSLCREG 118
            P   T++ L+ G+      E A        E+  E  E  L  +++ F +++   C+EG
Sbjct: 518 TPTVSTFNSLIGGLCHHGKTELA-------MEKFDELAESGLLPDDSTFNSIILGYCKEG 570

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
            V + F    +  +     + + C  +++ LC+ G    A      + +     + V+YN
Sbjct: 571 RVEKAFEFYNESIKHSFKPDNYTCNILLNGLCKEGMTEKALNFFNTLIEEREVDT-VTYN 629

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
           +++   CK      AY LL E  + G  P   TY   +  L  +  L +  ++L+   S 
Sbjct: 630 TMISAFCKDKKLKEAYDLLSEMEEKGLEPDRFTYNSFISLLMEDGKLSETDELLK-KFSG 688

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
           K     R   +        KNP    +      + +   + I  + VI+  C  GR++E
Sbjct: 689 KFGSMKRDLQVETE-----KNPATSES------KEELNTEAIAYSDVIDELCSRGRLKE 736


>gi|242058301|ref|XP_002458296.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
 gi|241930271|gb|EES03416.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
          Length = 1035

 Score =  188 bits (477), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 126/505 (24%), Positives = 237/505 (46%), Gaps = 19/505 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFD-MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVF-----DE 54
           ++ LC   RVGEA  +    M   G +P+ VSY  L+ G C     + A ++      D+
Sbjct: 136 LNGLCDGKRVGEAMDVLLQRMPELGCMPDTVSYNILLKGLCNEKRAEEALELLHMMADDQ 195

Query: 55  MRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSL 114
           +  C   PN ++YS ++ G      V++   L  ++ +R      +  +   +  ++D L
Sbjct: 196 VWSCP--PNVVSYSTVINGFFTEGQVDKPYNLFLEMMDR-----GIPPDVVTYTTVIDGL 248

Query: 115 CREGYVNEVFRIAEDM-PQGKSVN-EEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTP 172
           C+    +    + + M   G   N + + C  +I      G+     R++  M   G  P
Sbjct: 249 CKAQLFDRAEAVFQQMIDNGVKPNIDTYNC--LIHGYLSIGKWKEVVRMLEEMSAGGPKP 306

Query: 173 SLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVL 232
           +  +Y S+++ LCK+G C  A    +  I  G  PS  TY +++ G   +  L +   +L
Sbjct: 307 NCCTYGSLLNYLCKNGRCREARFFFDSMIGKGIKPSVTTYGIMLHGYATKGALSEMHDLL 366

Query: 233 QFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKM 292
             M++        I NI+  A        + +++   M Q    PD ++   +I+  CK+
Sbjct: 367 NLMVANGISPNHHIFNIFFSAYAKCGIIDKAMDIFNKMRQQGLSPDAVSYGALIDALCKL 426

Query: 293 GRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIV 352
           GR+++A    N M+  +   PD V F+++++GL  V + ++   L ++ M   G  P IV
Sbjct: 427 GRVDDAEVKFNQMI-NEGVTPDIVVFSSLVYGLCTVDKWEKVEELFFE-MLNVGIHPNIV 484

Query: 353 TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI 412
            +N +L  L +  RV E + + + +  +GV  D  +Y  +IDG C +  +DEA +  + +
Sbjct: 485 FFNTILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGM 544

Query: 413 VWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMK 472
           V      D++ Y  ++ G C++G+I  A     +++ +G+TP +V YN ++ G  +    
Sbjct: 545 VSVGLKPDSFSYNTLLHGYCKAGRIDSAYSHFRKMLSNGITPGVVTYNTILHGLFQTKRF 604

Query: 473 REAYQILREMRKNGLNPDAVTWRIL 497
            EA ++   M  +G   D  T+ I+
Sbjct: 605 SEAKELYLNMINSGTKWDIYTYNII 629



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 131/532 (24%), Positives = 235/532 (44%), Gaps = 45/532 (8%)

Query: 4   LCGLSRVGEAHKLFF---DMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           LC   R  EA +L     D +     PNVVSY+T+I+G+   G++D  Y +F EM   G+
Sbjct: 175 LCNEKRAEEALELLHMMADDQVWSCPPNVVSYSTVINGFFTEGQVDKPYNLFLEMMDRGI 234

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TY+ ++ G+ + +  +RA  +  ++ +       +  N   +  L+      G  
Sbjct: 235 PPDVVTYTTVIDGLCKAQLFDRAEAVFQQMID-----NGVKPNIDTYNCLIHGYLSIGKW 289

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            EV R+ E+M  G         G +++ LC++GR   A      M  +G+ PS+ +Y  +
Sbjct: 290 KEVVRMLEEMSAGGPKPNCCTYGSLLNYLCKNGRCREARFFFDSMIGKGIKPSVTTYGIM 349

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEH------------------------------ 210
           +HG    G     + LL   +  G  P+ H                              
Sbjct: 350 LHGYATKGALSEMHDLLNLMVANGISPNHHIFNIFFSAYAKCGIIDKAMDIFNKMRQQGL 409

Query: 211 -----TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 265
                +Y  L++ LC    ++ A      M+++       + +  +  LC +    ++  
Sbjct: 410 SPDAVSYGALIDALCKLGRVDDAEVKFNQMINEGVTPDIVVFSSLVYGLCTVDKWEKVEE 469

Query: 266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 325
           +   ML     P+++  NT++   CK GR+ E  +++ D +      PD +++ T+I G 
Sbjct: 470 LFFEMLNVGIHPNIVFFNTILCNLCKEGRVMEGQRLV-DSIECMGVRPDVISYNTLIDGH 528

Query: 326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 385
              G I EA  LL + M   G  P   +YN +L G  +  R++ A   F  ML  G+   
Sbjct: 529 CLAGTIDEASKLL-EGMVSVGLKPDSFSYNTLLHGYCKAGRIDSAYSHFRKMLSNGITPG 587

Query: 386 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY 445
             TY  ++ GL ++ +  EAK  + +++      D Y Y  ++ GLC+S  + EA+    
Sbjct: 588 VVTYNTILHGLFQTKRFSEAKELYLNMINSGTKWDIYTYNIILNGLCKSNCVDEAIKMFQ 647

Query: 446 ELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            L   G+  NI+ +N++I    K   K +A  +   +  NGL  + VT+R++
Sbjct: 648 NLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAIPANGLVQNVVTYRLV 699



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 138/507 (27%), Positives = 230/507 (45%), Gaps = 9/507 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC       A  +F  M   G  PN+ +Y  LIHGY   G+     ++ +EM   G 
Sbjct: 245 IDGLCKAQLFDRAEAVFQQMIDNGVKPNIDTYNCLIHGYLSIGKWKEVVRMLEEMSAGGP 304

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN  TY  L+  + +      A      +  +      +  +   +  ++     +G +
Sbjct: 305 KPNCCTYGSLLNYLCKNGRCREARFFFDSMIGK-----GIKPSVTTYGIMLHGYATKGAL 359

Query: 121 NEVFRIAEDM-PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           +E+  +   M   G S N          +  + G    A  +   MR++GL+P  VSY +
Sbjct: 360 SEMHDLLNLMVANGISPNHHIF-NIFFSAYAKCGIIDKAMDIFNKMRQQGLSPDAVSYGA 418

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++  LCK G    A     + I  G  P    +  LV GLC     EK  ++   ML+  
Sbjct: 419 LIDALCKLGRVDDAEVKFNQMINEGVTPDIVVFSSLVYGLCTVDKWEKVEELFFEMLNVG 478

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                   N  L  LC      E   ++  +     +PDVI+ NT+I+G C  G I+EA 
Sbjct: 479 IHPNIVFFNTILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEAS 538

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           K+L  MV+     PD+ ++ T++ G    GRI  A +  ++ M   G +PG+VTYN +L 
Sbjct: 539 KLLEGMVSVGL-KPDSFSYNTLLHGYCKAGRIDSAYS-HFRKMLSNGITPGVVTYNTILH 596

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
           GLF+ +R  EAKE++  M+  G   D  TY I+++GLC+SN +DEA + + ++       
Sbjct: 597 GLFQTKRFSEAKELYLNMINSGTKWDIYTYNIILNGLCKSNCVDEAIKMFQNLCSKGLQL 656

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           +   +  MI  L + G+  +A+     +  +G+  N+V Y +V++   +     E   + 
Sbjct: 657 NIITFNIMIGALLKGGRKEDAMDLFAAIPANGLVQNVVTYRLVVENLIEEGSLEEFDSLF 716

Query: 480 REMRKNGLNPDAVTWRILDKLHGNRGN 506
             M KNG  P++     L +   +RG+
Sbjct: 717 SAMEKNGTAPNSQMLNALVRRLLHRGD 743



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 127/526 (24%), Positives = 238/526 (45%), Gaps = 37/526 (7%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC L RV +A   F  M + G  P++V +++L++G C   + +   ++F EM + G+
Sbjct: 420 IDALCKLGRVDDAEVKFNQMINEGVTPDIVVFSSLVYGLCTVDKWEKVEELFFEMLNVGI 479

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN + ++ ++  + +   V     L+  + E M    D+     ++  L+D  C  G +
Sbjct: 480 HPNIVFFNTILCNLCKEGRVMEGQRLVDSI-ECMGVRPDV----ISYNTLIDGHCLAGTI 534

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E  ++ E M       + F+   ++   C++GR   A      M   G+TP +V+YN+I
Sbjct: 535 DEASKLLEGMVSVGLKPDSFSYNTLLHGYCKAGRIDSAYSHFRKMLSNGITPGVVTYNTI 594

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +HGL +      A +L    I  G     +TY +++ GLC  + +++A K+ Q + SK  
Sbjct: 595 LHGLFQTKRFSEAKELYLNMINSGTKWDIYTYNIILNGLCKSNCVDEAIKMFQNLCSKGL 654

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                  NI + AL       + +++   +       +V+T   V+    + G +EE   
Sbjct: 655 QLNIITFNIMIGALLKGGRKEDAMDLFAAIPANGLVQNVVTYRLVVENLIEEGSLEEFDS 714

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           + + M      AP++     ++  LL+ G I  A   L + + +R +S    T  ++L  
Sbjct: 715 LFSAMEKNG-TAPNSQMLNALVRRLLHRGDISRAGAYLSK-LDERNFSVEAST-TSMLIS 771

Query: 361 LF-----------------------------RLRRVEEAKEVFNCMLGIGVVADSTTYAI 391
           +F                             + RR+++A  +F  ML  G+  D  TY  
Sbjct: 772 IFSSDEYQHHAKSLPKKYRILNEANSSALIKKARRIDDAYSLFREMLMKGLTPDVVTYNT 831

Query: 392 VIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 451
           ++ GL ++ +  EAK  +  ++      + Y Y  ++ GLC+S  + EA      L   G
Sbjct: 832 ILHGLFQTGRFSEAKELYLSMINSRTQMNIYTYNIILNGLCKSNCVDEAFKMFQSLCSKG 891

Query: 452 VTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           +  NI+ +N++I    K   K +A  +   +  NGL PD VT+R++
Sbjct: 892 LQLNIITFNIMIGALLKGGRKEDAMDLFAAIPANGLVPDVVTYRLV 937



 Score =  161 bits (407), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 124/509 (24%), Positives = 230/509 (45%), Gaps = 27/509 (5%)

Query: 10  VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCR-------TGEMDVAYKVFDEM-RHC--G 59
           +G+A KLF ++       +VV++  L+    R       T E +    +F+ M R C   
Sbjct: 30  LGDALKLFDELLPHARPASVVAFNHLLAAVSRSSGRRSTTSESETVVSLFNRMVRDCYIK 89

Query: 60  VLPNSLTYSVLVRGVLRTRDVER---ANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCR 116
           V PN  TYS+L+    R   +E    A  L+ K   RM        ++     L++ LC 
Sbjct: 90  VAPNRCTYSILIGCFCRMGHLEHGFAAFGLILKTGWRM--------DHIVINQLLNGLCD 141

Query: 117 EGYVNEVFRI-AEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGL---TP 172
              V E   +  + MP+   + +  +   ++  LC   R   A  ++++M    +    P
Sbjct: 142 GKRVGEAMDVLLQRMPELGCMPDTVSYNILLKGLCNEKRAEEALELLHMMADDQVWSCPP 201

Query: 173 SLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVL 232
           ++VSY+++++G    G   + Y L  E +  G  P   TY  +++GLC     ++A  V 
Sbjct: 202 NVVSYSTVINGFFTEGQVDKPYNLFLEMMDRGIPPDVVTYTTVIDGLCKAQLFDRAEAVF 261

Query: 233 QFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKM 292
           Q M+           N  +     I    E++ +L  M     +P+  T  +++N  CK 
Sbjct: 262 QQMIDNGVKPNIDTYNCLIHGYLSIGKWKEVVRMLEEMSAGGPKPNCCTYGSLLNYLCKN 321

Query: 293 GRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIV 352
           GR  EA    + M+ GK   P   T+  ++ G    G + E  +LL  +M   G SP   
Sbjct: 322 GRCREARFFFDSMI-GKGIKPSVTTYGIMLHGYATKGALSEMHDLL-NLMVANGISPNHH 379

Query: 353 TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI 412
            +N       +   +++A ++FN M   G+  D+ +Y  +ID LC+  ++D+A+  ++ +
Sbjct: 380 IFNIFFSAYAKCGIIDKAMDIFNKMRQQGLSPDAVSYGALIDALCKLGRVDDAEVKFNQM 439

Query: 413 VWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMK 472
           +      D  V+++++ GLC   K  +     +E+++ G+ PNIV +N ++   CK    
Sbjct: 440 INEGVTPDIVVFSSLVYGLCTVDKWEKVEELFFEMLNVGIHPNIVFFNTILCNLCKEGRV 499

Query: 473 REAYQILREMRKNGLNPDAVTWRILDKLH 501
            E  +++  +   G+ PD +++  L   H
Sbjct: 500 MEGQRLVDSIECMGVRPDVISYNTLIDGH 528



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 118/477 (24%), Positives = 207/477 (43%), Gaps = 39/477 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C    + EA KL   M S G  P+  SY TL+HGYC+ G +D AY  F +M   G+
Sbjct: 525 IDGHCLAGTIDEASKLLEGMVSVGLKPDSFSYNTLLHGYCKAGRIDSAYSHFRKMLSNGI 584

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P  +TY+ ++ G+ +T+    A  L   +     + +  + N      +++ LC+   V
Sbjct: 585 TPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKWDIYTYNI-----ILNGLCKSNCV 639

Query: 121 NEVFRIAEDM-PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           +E  ++ +++  +G  +N       MI +L + GR   A  +   +   GL  ++V+Y  
Sbjct: 640 DEAIKMFQNLCSKGLQLNI-ITFNIMIGALLKGGRKEDAMDLFAAIPANGLVQNVVTYRL 698

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQ------ 233
           +V  L + G       L     + G  P+      LV  L    D+ +A   L       
Sbjct: 699 VVENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRAGAYLSKLDERN 758

Query: 234 --------FML------------SKKDVDRTRICNIYLRALCLIKNPTELLNVLVF---M 270
                    ML            +K    + RI N    +  LIK    + +       M
Sbjct: 759 FSVEASTTSMLISIFSSDEYQHHAKSLPKKYRILN-EANSSALIKKARRIDDAYSLFREM 817

Query: 271 LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR 330
           L     PDV+T NT+++G  + GR  EA ++   M+  +    +  T+  I+ GL     
Sbjct: 818 LMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSR-TQMNIYTYNIILNGLCKSNC 876

Query: 331 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYA 390
           + EA  + +Q +  +G    I+T+N ++  L +  R E+A ++F  +   G+V D  TY 
Sbjct: 877 VDEAFKM-FQSLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAIPANGLVPDVVTYR 935

Query: 391 IVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYEL 447
           +V + L E   L+E    +  +       D+ +  A+++ L + G I  A  +L +L
Sbjct: 936 LVAENLIEEGSLEEFDGLFLTMEKSGTPLDSRLLNALVRRLLQRGDISRAGAYLSKL 992



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/236 (31%), Positives = 117/236 (49%), Gaps = 4/236 (1%)

Query: 269 FMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNV 328
            +L+T  + D I +N ++NG C   R+ EA+ VL   +    C PD V++  ++ GL N 
Sbjct: 119 LILKTGWRMDHIVINQLLNGLCDGKRVGEAMDVLLQRMPELGCMPDTVSYNILLKGLCNE 178

Query: 329 GRIQEALNLLYQVMPQRGYS--PGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
            R +EAL LL+ +   + +S  P +V+Y+ V+ G F   +V++   +F  M+  G+  D 
Sbjct: 179 KRAEEALELLHMMADDQVWSCPPNVVSYSTVINGFFTEGQVDKPYNLFLEMMDRGIPPDV 238

Query: 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE 446
            TY  VIDGLC++   D A+  +  ++      +   Y  +I G    GK  E V  L E
Sbjct: 239 VTYTTVIDGLCKAQLFDRAEAVFQQMIDNGVKPNIDTYNCLIHGYLSIGKWKEVVRMLEE 298

Query: 447 LVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
           +   G  PN   Y  +++  CK    REA      M   G+ P   T+ I+  LHG
Sbjct: 299 MSAGGPKPNCCTYGSLLNYLCKNGRCREARFFFDSMIGKGIKPSVTTYGIM--LHG 352



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 107/216 (49%), Gaps = 15/216 (6%)

Query: 296 EEALKVLNDMVAGKF--CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVT 353
           E  + + N MV   +   AP+  T++ +I     +G ++      + ++ + G+    + 
Sbjct: 73  ETVVSLFNRMVRDCYIKVAPNRCTYSILIGCFCRMGHLEHGF-AAFGLILKTGWRMDHIV 131

Query: 354 YNAVLRGLFRLRRVEEAKEVF-NCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFW--- 409
            N +L GL   +RV EA +V    M  +G + D+ +Y I++ GLC   + +EA       
Sbjct: 132 INQLLNGLCDGKRVGEAMDVLLQRMPELGCMPDTVSYNILLKGLCNEKRAEEALELLHMM 191

Query: 410 -DDIVW--PSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466
            DD VW  P N+     Y+ +I G    G++ +  +   E++D G+ P++V Y  VIDG 
Sbjct: 192 ADDQVWSCPPNV---VSYSTVINGFFTEGQVDKPYNLFLEMMDRGIPPDVVTYTTVIDGL 248

Query: 467 CKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
           CK  +   A  + ++M  NG+ P+  T+  L  +HG
Sbjct: 249 CKAQLFDRAEAVFQQMIDNGVKPNIDTYNCL--IHG 282


>gi|125544564|gb|EAY90703.1| hypothetical protein OsI_12306 [Oryza sativa Indica Group]
          Length = 644

 Score =  188 bits (477), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 137/502 (27%), Positives = 235/502 (46%), Gaps = 7/502 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R+ +A ++  +M  +G  P    Y  ++   CR+G    + +V + M   G   +
Sbjct: 121 LCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLD 180

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           +   ++++  +     V+ A  L+ KL     E + +S N      ++  LC      +V
Sbjct: 181 TGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNA-----VLKGLCMAKRWGDV 235

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             + ++M +            +I  LCR+G       V+  M + G TP +  Y +I+ G
Sbjct: 236 EELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDG 295

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           +CK G    A ++L     +G  P+   Y  +++GLC     ++A ++L  M  K     
Sbjct: 296 ICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLD 355

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               NI +   C       ++ +L  ML   C PDVIT  TVINGFCK G I+EA+ +L 
Sbjct: 356 DVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLK 415

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            M +   C P+ V++T ++ GL + GR  +A  L+ Q M Q+G  P  VT+N ++  L +
Sbjct: 416 SMSSCG-CKPNTVSYTIVLKGLCSAGRWVDAEELMSQ-MIQQGCPPNPVTFNTLINFLCK 473

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
              VE+A E+   ML  G   D  +Y+ VIDGL ++ + +EA    + +V      +  +
Sbjct: 474 KGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTII 533

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y+++   L R G++++ +     + D+ +  + V YN VI   CK      A      M 
Sbjct: 534 YSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMV 593

Query: 484 KNGLNPDAVTWRILDKLHGNRG 505
            NG  P+  T+ +L K   + G
Sbjct: 594 SNGCMPNESTYTMLIKGLASEG 615



 Score =  181 bits (458), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 122/451 (27%), Positives = 216/451 (47%), Gaps = 7/451 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ +C    V EA  L   +   G   ++VSY  ++ G C         ++ DEM     
Sbjct: 188 LNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDC 247

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +T++ L+  + R    ER + ++ ++      E   + +   +A ++D +C+EG++
Sbjct: 248 APNIVTFNTLIGYLCRNGLFERVHEVLAQM-----SEHGCTPDIRMYATIIDGICKEGHL 302

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                I   MP             ++  LC + R   A  ++  M ++      V++N +
Sbjct: 303 EVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNIL 362

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           V   C++G   R  +LLE+ +  G +P   TY  ++ G C E  +++A  +L+ M S   
Sbjct: 363 VDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGC 422

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
              T    I L+ LC      +   ++  M+Q  C P+ +T NT+IN  CK G +E+A++
Sbjct: 423 KPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIE 482

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +L  M+    C+PD ++++T+I GL   G+ +EAL LL  VM  +G SP  + Y+++   
Sbjct: 483 LLKQMLVNG-CSPDLISYSTVIDGLGKAGKTEEALELL-NVMVNKGISPNTIIYSSIACA 540

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L R  RV +  ++F+ +    + +D+  Y  VI  LC+  + D A  F+  +V    + +
Sbjct: 541 LSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPN 600

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 451
              Y  +IKGL   G   EA   L EL   G
Sbjct: 601 ESTYTMLIKGLASEGLAKEAQELLSELCSRG 631



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 116/475 (24%), Positives = 222/475 (46%), Gaps = 28/475 (5%)

Query: 29  VVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGV-LRTRDVERANVLM 87
           VV+Y  ++ GYCR G++  A ++   +    V PN+ T+  +VRG+  R R  +   VL 
Sbjct: 79  VVAYNAMVAGYCRAGQLAAARRLAAAVP---VPPNAYTFFPVVRGLCTRGRIADALEVL- 134

Query: 88  FKLWERMKEEEDLSVNNAA-----FANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFAC 142
                     +++S    A     +  ++++ CR G      R+ E M       +   C
Sbjct: 135 ----------DEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNC 184

Query: 143 GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQ 202
             +++++C  G    A  ++  +   G    +VSYN+++ GLC         +L++E ++
Sbjct: 185 NLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVR 244

Query: 203 FGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCL---IKN 259
               P+  T+  L+  LC     E+  +VL  M         R+    +  +C    ++ 
Sbjct: 245 VDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEV 304

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
             E+LN    M     +P+V+  NTV+ G C   R +EA ++L++M   K C  D VTF 
Sbjct: 305 ANEILN---RMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQ-KDCPLDDVTFN 360

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
            ++      G +   + LL Q++   G  P ++TY  V+ G  +   ++EA  +   M  
Sbjct: 361 ILVDFFCQNGLVDRVIELLEQML-SHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSS 419

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
            G   ++ +Y IV+ GLC + +  +A+     ++      +   +  +I  LC+ G + +
Sbjct: 420 CGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQ 479

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
           A+  L +++ +G +P+++ Y+ VIDG  K     EA ++L  M   G++P+ + +
Sbjct: 480 AIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIY 534



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 108/403 (26%), Positives = 186/403 (46%), Gaps = 11/403 (2%)

Query: 106 AFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVM 165
           A+  +V   CR G +    R+A  +P   +    F    ++  LC  GR   A  V+  M
Sbjct: 81  AYNAMVAGYCRAGQLAAARRLAAAVPVPPNAYTFFP---VVRGLCTRGRIADALEVLDEM 137

Query: 166 RKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDL 225
             +G  P    Y+ I+   C+ GG   + ++LE     G         +++  +C +  +
Sbjct: 138 SFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCV 197

Query: 226 EKARKVLQ---FMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITL 282
           ++A  +L+   F   + D+      N  L+ LC+ K   ++  ++  M++  C P+++T 
Sbjct: 198 DEAVGLLRKLAFFGCEADIVSY---NAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTF 254

Query: 283 NTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVM 342
           NT+I   C+ G  E   +VL  M +   C PD   + TII G+   G ++ A N +   M
Sbjct: 255 NTLIGYLCRNGLFERVHEVLAQM-SEHGCTPDIRMYATIIDGICKEGHLEVA-NEILNRM 312

Query: 343 PQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQL 402
           P  G  P +V YN VL+GL    R +EA+E+ + M       D  T+ I++D  C++  +
Sbjct: 313 PSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLV 372

Query: 403 DEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVV 462
           D      + ++    + D   Y  +I G C+ G I EAV  L  +   G  PN V Y +V
Sbjct: 373 DRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIV 432

Query: 463 IDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
           + G C      +A +++ +M + G  P+ VT+  L      +G
Sbjct: 433 LKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKG 475


>gi|108709396|gb|ABF97191.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215687193|dbj|BAG91758.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222625245|gb|EEE59377.1| hypothetical protein OsJ_11489 [Oryza sativa Japonica Group]
          Length = 644

 Score =  188 bits (477), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 137/502 (27%), Positives = 235/502 (46%), Gaps = 7/502 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R+ +A ++  +M  +G  P    Y  ++   CR+G    + +V + M   G   +
Sbjct: 121 LCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLD 180

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           +   ++++  +     V+ A  L+ KL     E + +S N      ++  LC      +V
Sbjct: 181 TGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNA-----VLKGLCMAKRWGDV 235

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             + ++M +            +I  LCR+G       V+  M + G TP +  Y +I+ G
Sbjct: 236 EELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDG 295

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           +CK G    A ++L     +G  P+   Y  +++GLC     ++A ++L  M  K     
Sbjct: 296 ICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLD 355

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               NI +   C       ++ +L  ML   C PDVIT  TVINGFCK G I+EA+ +L 
Sbjct: 356 DVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLK 415

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            M +   C P+ V++T ++ GL + GR  +A  L+ Q M Q+G  P  VT+N ++  L +
Sbjct: 416 SMSSCG-CKPNTVSYTIVLKGLCSAGRWVDAEELMSQ-MIQQGCPPNPVTFNTLINFLCK 473

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
              VE+A E+   ML  G   D  +Y+ VIDGL ++ + +EA    + +V      +  +
Sbjct: 474 KGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTII 533

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y+++   L R G++++ +     + D+ +  + V YN VI   CK      A      M 
Sbjct: 534 YSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMV 593

Query: 484 KNGLNPDAVTWRILDKLHGNRG 505
            NG  P+  T+ +L K   + G
Sbjct: 594 SNGCMPNESTYTMLIKGLASEG 615



 Score =  181 bits (458), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 122/451 (27%), Positives = 216/451 (47%), Gaps = 7/451 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ +C    V EA  L   +   G   ++VSY  ++ G C         ++ DEM     
Sbjct: 188 LNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDC 247

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +T++ L+  + R    ER + ++ ++      E   + +   +A ++D +C+EG++
Sbjct: 248 APNIVTFNTLIGYLCRNGLFERVHEVLAQM-----SEHGCTPDIRMYATIIDGICKEGHL 302

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                I   MP             ++  LC + R   A  ++  M ++      V++N +
Sbjct: 303 EVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNIL 362

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           V   C++G   R  +LLE+ +  G +P   TY  ++ G C E  +++A  +L+ M S   
Sbjct: 363 VDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGC 422

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
              T    I L+ LC      +   ++  M+Q  C P+ +T NT+IN  CK G +E+A++
Sbjct: 423 KPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIE 482

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +L  M+    C+PD ++++T+I GL   G+ +EAL LL  VM  +G SP  + Y+++   
Sbjct: 483 LLKQMLVNG-CSPDLISYSTVIDGLGKAGKTEEALELL-NVMVNKGISPNTIIYSSIACA 540

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L R  RV +  ++F+ +    + +D+  Y  VI  LC+  + D A  F+  +V    + +
Sbjct: 541 LSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPN 600

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 451
              Y  +IKGL   G   EA   L EL   G
Sbjct: 601 ESTYTMLIKGLASEGLAKEAQELLSELCSRG 631



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 116/475 (24%), Positives = 222/475 (46%), Gaps = 28/475 (5%)

Query: 29  VVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGV-LRTRDVERANVLM 87
           VV+Y  ++ GYCR G++  A ++   +    V PN+ T+  +VRG+  R R  +   VL 
Sbjct: 79  VVAYNAMVAGYCRAGQLAAARRLAAAVP---VPPNAYTFFPVVRGLCTRGRIADALEVL- 134

Query: 88  FKLWERMKEEEDLSVNNAA-----FANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFAC 142
                     +++S    A     +  ++++ CR G      R+ E M       +   C
Sbjct: 135 ----------DEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNC 184

Query: 143 GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQ 202
             +++++C  G    A  ++  +   G    +VSYN+++ GLC         +L++E ++
Sbjct: 185 NLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVR 244

Query: 203 FGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCL---IKN 259
               P+  T+  L+  LC     E+  +VL  M         R+    +  +C    ++ 
Sbjct: 245 VDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEV 304

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
             E+LN    M     +P+V+  NTV+ G C   R +EA ++L++M   K C  D VTF 
Sbjct: 305 ANEILN---RMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQ-KDCPLDDVTFN 360

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
            ++      G +   + LL Q++   G  P ++TY  V+ G  +   ++EA  +   M  
Sbjct: 361 ILVDFFCQNGLVDRVIELLEQML-SHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSS 419

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
            G   ++ +Y IV+ GLC + +  +A+     ++      +   +  +I  LC+ G + +
Sbjct: 420 CGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQ 479

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
           A+  L +++ +G +P+++ Y+ VIDG  K     EA ++L  M   G++P+ + +
Sbjct: 480 AIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIY 534



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 108/403 (26%), Positives = 186/403 (46%), Gaps = 11/403 (2%)

Query: 106 AFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVM 165
           A+  +V   CR G +    R+A  +P   +    F    ++  LC  GR   A  V+  M
Sbjct: 81  AYNAMVAGYCRAGQLAAARRLAAAVPVPPNAYTFFP---VVRGLCTRGRIADALEVLDEM 137

Query: 166 RKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDL 225
             +G  P    Y+ I+   C+ GG   + ++LE     G         +++  +C +  +
Sbjct: 138 SFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCV 197

Query: 226 EKARKVLQ---FMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITL 282
           ++A  +L+   F   + D+      N  L+ LC+ K   ++  ++  M++  C P+++T 
Sbjct: 198 DEAVGLLRKLAFFGCEADIVSY---NAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTF 254

Query: 283 NTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVM 342
           NT+I   C+ G  E   +VL  M +   C PD   + TII G+   G ++ A N +   M
Sbjct: 255 NTLIGYLCRNGLFERVHEVLAQM-SEHGCTPDIRMYATIIDGICKEGHLEVA-NEILNRM 312

Query: 343 PQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQL 402
           P  G  P +V YN VL+GL    R +EA+E+ + M       D  T+ I++D  C++  +
Sbjct: 313 PSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLV 372

Query: 403 DEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVV 462
           D      + ++    + D   Y  +I G C+ G I EAV  L  +   G  PN V Y +V
Sbjct: 373 DRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIV 432

Query: 463 IDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
           + G C      +A +++ +M + G  P+ VT+  L      +G
Sbjct: 433 LKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKG 475


>gi|242073534|ref|XP_002446703.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
 gi|241937886|gb|EES11031.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
          Length = 802

 Score =  188 bits (477), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 136/515 (26%), Positives = 234/515 (45%), Gaps = 35/515 (6%)

Query: 8   SRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTY 67
           S   EA      M+    +PNVV+Y TL+ G+ +  ++    ++ + M   G  PN   +
Sbjct: 121 SLFDEAISFLHRMRCNSCIPNVVTYRTLLTGFLKKKQLGWCKRIINMMMKEGCNPNPSLF 180

Query: 68  SVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLC------REGYVN 121
           + LV      RD   A    +KL +RM +         A+   + S+C          + 
Sbjct: 181 NSLVHSYCNARDYPYA----YKLLKRMADC-GCPPGYVAYNIFIGSICGGEELPSPDLLA 235

Query: 122 EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
              ++ E+M     V  +    +    LC  G+   A +++ VM  +G  P   +Y+ ++
Sbjct: 236 LAEKVYEEMLASSCVLNKVNTANFARCLCGMGKFDMAFQIIKVMMGKGFVPDTSTYSKVI 295

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM----LS 237
             LC+     +A+ L +E    G  P  +TY +L++  C    +E+AR     M     S
Sbjct: 296 TFLCEAMKVEKAFLLFQEMKSVGVNPDVYTYTILIDSFCKAGLIEQARSWFDEMRSIGCS 355

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
              V  T + + YL+A    K   +  ++   M+   C P+ IT + +++G CK G I++
Sbjct: 356 ANVVTYTALLHAYLKA----KQLPQASDIFNRMIDAGCPPNTITYSALVDGLCKAGEIQK 411

Query: 298 ALKV------LNDMVAGKF---------CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVM 342
           A +V       +D V   F          AP+ VT+  +I GL    ++ +A  LL   M
Sbjct: 412 ACEVYTKLIGTSDNVGSDFYFEGKHTDSIAPNVVTYGALIDGLCKAHKVVDAQELL-DAM 470

Query: 343 PQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQL 402
              G  P  + Y+A++ G  ++ +++ A+EVF  M   G +    TY  +ID + +  +L
Sbjct: 471 LSNGCEPNHIIYDALIDGFCKVGKIDNAQEVFLRMSKCGYLPTVHTYTSLIDAMFKDRRL 530

Query: 403 DEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVV 462
           D A +    +V  S   +   Y AMI GLCR G+  +A+  L  + + G +PN+V Y  +
Sbjct: 531 DLAMKVLSQMVESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEEKGCSPNVVTYTAL 590

Query: 463 IDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           IDG  K      + Q+  +M   G  P+ VT+R+L
Sbjct: 591 IDGLGKSGKVDLSLQLFIQMSTKGCAPNYVTYRVL 625



 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 132/504 (26%), Positives = 241/504 (47%), Gaps = 28/504 (5%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   +V +A  LF +MKS G  P+V +YT LI  +C+ G ++ A   FDEMR  G   N
Sbjct: 298 LCEAMKVEKAFLLFQEMKSVGVNPDVYTYTILIDSFCKAGLIEQARSWFDEMRSIGCSAN 357

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY+ L+   L+ + + +A+     ++ RM  +     N   ++ LVD LC+ G + + 
Sbjct: 358 VVTYTALLHAYLKAKQLPQAS----DIFNRMI-DAGCPPNTITYSALVDGLCKAGEIQKA 412

Query: 124 FRIAEDM-PQGKSVNEEF---------------ACGHMIDSLCRSGRNHGASRVVYVMRK 167
             +   +     +V  +F                 G +ID LC++ +   A  ++  M  
Sbjct: 413 CEVYTKLIGTSDNVGSDFYFEGKHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDAMLS 472

Query: 168 RGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEK 227
            G  P+ + Y++++ G CK G    A ++     + GYLP+ HTY  L++ +  +  L+ 
Sbjct: 473 NGCEPNHIIYDALIDGFCKVGKIDNAQEVFLRMSKCGYLPTVHTYTSLIDAMFKDRRLDL 532

Query: 228 ARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVIN 287
           A KVL  M+              +  LC I    + L +L  M +  C P+V+T   +I+
Sbjct: 533 AMKVLSQMVESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEEKGCSPNVVTYTALID 592

Query: 288 GFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGY 347
           G  K G+++ +L++   M + K CAP+ VT+  +I      G + EA +LL + M Q  +
Sbjct: 593 GLGKSGKVDLSLQLFIQM-STKGCAPNYVTYRVLINHCCAAGLLDEAHSLLSE-MKQTYW 650

Query: 348 SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKR 407
              +  Y +V++G    ++   +  +   +   G V  +  Y ++ID   ++ +L+EA  
Sbjct: 651 PKYLQGYCSVVQGFS--KKFIASLGLLEELESHGTVPIAPVYGLLIDNFSKAGRLEEALE 708

Query: 408 FWDDIVWPS---NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
              +++  S   NI    +Y ++I+ LC + ++ +A     E+   GV P +  +  +I 
Sbjct: 709 LHKEMMELSSSLNITSKDMYTSLIQALCLASQLEKAFELYSEITRKGVVPELSVFVCLIK 768

Query: 465 GACKLSMKREAYQILREMRKNGLN 488
           G  K++   EA Q+   +   G+N
Sbjct: 769 GLIKVNKWNEALQLCYSICDEGVN 792



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 114/501 (22%), Positives = 210/501 (41%), Gaps = 94/501 (18%)

Query: 103 NNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVV 162
           + A +  LV  L   G ++  FR+ ++M +     ++F  G    +LC+ GR   A  ++
Sbjct: 39  SGATYNALVQVLATAGQMDMGFRVQKEMSESGFCMDKFTVGCFAQALCKEGRWSDALVMI 98

Query: 163 --------------------------------YVMRKRGLTPSLVSYNSIVHGLCKH--- 187
                                           + MR     P++V+Y +++ G  K    
Sbjct: 99  EREDFKLDTVLCTQMISGLMEASLFDEAISFLHRMRCNSCIPNVVTYRTLLTGFLKKKQL 158

Query: 188 GGCMR--------------------------------AYQLLEEGIQFGYLPSEHTYKVL 215
           G C R                                AY+LL+     G  P    Y + 
Sbjct: 159 GWCKRIINMMMKEGCNPNPSLFNSLVHSYCNARDYPYAYKLLKRMADCGCPPGYVAYNIF 218

Query: 216 VEGLCGESDLEK------ARKVLQFMLSKKDV-DRTRICNIYLRALCLIKNPTELLNVLV 268
           +  +CG  +L        A KV + ML+   V ++    N + R LC +        ++ 
Sbjct: 219 IGSICGGEELPSPDLLALAEKVYEEMLASSCVLNKVNTAN-FARCLCGMGKFDMAFQIIK 277

Query: 269 FMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNV 328
            M+     PD  T + VI   C+  ++E+A  +  +M +     PD  T+T +I      
Sbjct: 278 VMMGKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGV-NPDVYTYTILIDSFCKA 336

Query: 329 GRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTT 388
           G I++A +  +  M   G S  +VTY A+L    + +++ +A ++FN M+  G   ++ T
Sbjct: 337 GLIEQARS-WFDEMRSIGCSANVVTYTALLHAYLKAKQLPQASDIFNRMIDAGCPPNTIT 395

Query: 389 YAIVIDGLCESNQLDEAKRFWDDIVWPSN---------------IHDNYV-YAAMIKGLC 432
           Y+ ++DGLC++ ++ +A   +  ++  S+               I  N V Y A+I GLC
Sbjct: 396 YSALVDGLCKAGEIQKACEVYTKLIGTSDNVGSDFYFEGKHTDSIAPNVVTYGALIDGLC 455

Query: 433 RSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAV 492
           ++ K+ +A   L  ++ +G  PN + Y+ +IDG CK+     A ++   M K G  P   
Sbjct: 456 KAHKVVDAQELLDAMLSNGCEPNHIIYDALIDGFCKVGKIDNAQEVFLRMSKCGYLPTVH 515

Query: 493 TW-RILDKLHGNRGNDFGLRI 512
           T+  ++D +  +R  D  +++
Sbjct: 516 TYTSLIDAMFKDRRLDLAMKV 536



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 71/310 (22%), Positives = 133/310 (42%), Gaps = 29/310 (9%)

Query: 203 FGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC------NIYLRALCL 256
           FGY PS  TY  LV+ L     ++   +V      +K++  +  C        + +ALC 
Sbjct: 34  FGYRPSGATYNALVQVLATAGQMDMGFRV------QKEMSESGFCMDKFTVGCFAQALC- 86

Query: 257 IKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAV 316
                   + LV + +   + D +    +I+G  +    +EA+  L+ M     C P+ V
Sbjct: 87  --KEGRWSDALVMIEREDFKLDTVLCTQMISGLMEASLFDEAISFLHRMRCNS-CIPNVV 143

Query: 317 TFTTIIFGLL---NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEV 373
           T+ T++ G L    +G  +  +N+    M + G +P    +N+++      R    A ++
Sbjct: 144 TYRTLLTGFLKKKQLGWCKRIINM----MMKEGCNPNPSLFNSLVHSYCNARDYPYAYKL 199

Query: 374 FNCMLGIGVVADSTTYAIVIDGLCESNQLDE------AKRFWDDIVWPSNIHDNYVYAAM 427
              M   G       Y I I  +C   +L        A++ +++++  S + +    A  
Sbjct: 200 LKRMADCGCPPGYVAYNIFIGSICGGEELPSPDLLALAEKVYEEMLASSCVLNKVNTANF 259

Query: 428 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
            + LC  GK   A   +  ++  G  P+   Y+ VI   C+     +A+ + +EM+  G+
Sbjct: 260 ARCLCGMGKFDMAFQIIKVMMGKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGV 319

Query: 488 NPDAVTWRIL 497
           NPD  T+ IL
Sbjct: 320 NPDVYTYTIL 329


>gi|222625337|gb|EEE59469.1| hypothetical protein OsJ_11675 [Oryza sativa Japonica Group]
          Length = 1095

 Score =  188 bits (477), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 125/482 (25%), Positives = 227/482 (47%), Gaps = 6/482 (1%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C  S++G A  L   ++SR    N   YT LI G+C+ GE+  A ++   M   G+ P+ 
Sbjct: 415 CKHSKLGPALDLIKYLRSRSISINRTMYTILIDGFCQLGEVSKAKQILKCMLADGIDPDV 474

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           +TYS L+ G+ +   +        ++  RM++   L  NN  +  LV   C+ G+  E  
Sbjct: 475 ITYSALINGMCKMGMIHETK----EILSRMQKSGVLP-NNVLYTTLVFYFCKAGHAKEAL 529

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
           +   D+ +   V        ++ S  R G    A +    M +  ++  + S+N I+   
Sbjct: 530 KYFVDIYRSGLVANSVIHNALLCSFYREGMIAEAEQFKQYMSRMKISFDVASFNCIIDSY 589

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
           C+ G  + A+ + +  ++ G+ P   TY  L+ GLC    L +A++ + ++L K      
Sbjct: 590 CQRGNVLEAFSVYDNMVRHGWPPDICTYGSLLRGLCQGGHLVQAKEFMVYLLEKACAIDE 649

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
           +  N  L  +C      E L++   M+     PD  T   +++GFCK G++  AL +L  
Sbjct: 650 KTLNTLLVGICKHGTLDEALDLCEKMVTRNILPDTYTYTILLDGFCKRGKVVPAL-ILLQ 708

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
           M+  K   PD + +T ++ GL+N G+++ A  +  +++ + G     + YN+++ G  + 
Sbjct: 709 MMLEKGLVPDTIAYTCLLNGLVNEGQVKAASYMFQEIICKEGLYADCIAYNSMMNGYLKG 768

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY 424
            ++ E + +   M    V   S +Y I++ G  +  QL      + D+V      DN  Y
Sbjct: 769 GQINEIERLMRNMHENEVYPSSASYNILMHGYIKKGQLSRTLYLYRDMVKEGIKPDNVTY 828

Query: 425 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484
             +I GLC  G I  AV FL ++V  GV P+ + ++++I    + S    A Q+   M+ 
Sbjct: 829 RLLIFGLCEYGLIEIAVKFLEKMVLEGVFPDNLAFDILIKAFSEKSKMSNALQLFSYMKW 888

Query: 485 NG 486
            G
Sbjct: 889 VG 890



 Score =  181 bits (459), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 142/542 (26%), Positives = 245/542 (45%), Gaps = 55/542 (10%)

Query: 6   GLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSL 65
           G  ++  A  +F  M  +   P+V +YT LI GYCR G  D A +V  EM+  GV P+ L
Sbjct: 346 GEGKINLAIYIFNQMLRQSLKPSVATYTALIDGYCRNGRTDEARRVLYEMQITGVRPSEL 405

Query: 66  TYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFR 125
           TYS L+ G  +   +  A  L+  L  R      +S+N   +  L+D  C+ G V++  +
Sbjct: 406 TYSALLNGYCKHSKLGPALDLIKYLRSR-----SISINRTMYTILIDGFCQLGEVSKAKQ 460

Query: 126 IAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLC 185
           I + M       +      +I+ +C+ G  H    ++  M+K G+ P+ V Y ++V   C
Sbjct: 461 ILKCMLADGIDPDVITYSALINGMCKMGMIHETKEILSRMQKSGVLPNNVLYTTLVFYFC 520

Query: 186 KHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK---DVD 242
           K G    A +   +  + G + +   +  L+     E  + +A +  Q+M   K   DV 
Sbjct: 521 KAGHAKEALKYFVDIYRSGLVANSVIHNALLCSFYREGMIAEAEQFKQYMSRMKISFDVA 580

Query: 243 R------------------------------TRICNI--YLRALCLIKNPTELLNVLVFM 270
                                            IC     LR LC   +  +    +V++
Sbjct: 581 SFNCIIDSYCQRGNVLEAFSVYDNMVRHGWPPDICTYGSLLRGLCQGGHLVQAKEFMVYL 640

Query: 271 LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR 330
           L+  C  D  TLNT++ G CK G ++EAL +   MV      PD  T+T ++ G    G+
Sbjct: 641 LEKACAIDEKTLNTLLVGICKHGTLDEALDLCEKMVTRNI-LPDTYTYTILLDGFCKRGK 699

Query: 331 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCML-GIGVVADSTTY 389
           +  AL LL Q+M ++G  P  + Y  +L GL    +V+ A  +F  ++   G+ AD   Y
Sbjct: 700 VVPALILL-QMMLEKGLVPDTIAYTCLLNGLVNEGQVKAASYMFQEIICKEGLYADCIAY 758

Query: 390 AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAA------MIKGLCRSGKIHEAVHF 443
             +++G  +  Q++E +R         N+H+N VY +      ++ G  + G++   ++ 
Sbjct: 759 NSMMNGYLKGGQINEIERLM------RNMHENEVYPSSASYNILMHGYIKKGQLSRTLYL 812

Query: 444 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGN 503
             ++V  G+ P+ V Y ++I G C+  +   A + L +M   G+ PD + + IL K    
Sbjct: 813 YRDMVKEGIKPDNVTYRLLIFGLCEYGLIEIAVKFLEKMVLEGVFPDNLAFDILIKAFSE 872

Query: 504 RG 505
           + 
Sbjct: 873 KS 874



 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 128/518 (24%), Positives = 242/518 (46%), Gaps = 32/518 (6%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ +C +  + E  ++   M+  G +PN V YTTL+  +C+ G    A K F ++   G+
Sbjct: 481 INGMCKMGMIHETKEILSRMQKSGVLPNNVLYTTLVFYFCKAGHAKEALKYFVDIYRSGL 540

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLW-ERMKEEEDLSVNNAAFANLVDSLCREGY 119
           + NS+ ++ L+    R   +  A    FK +  RMK    +S + A+F  ++DS C+ G 
Sbjct: 541 VANSVIHNALLCSFYREGMIAEAE--QFKQYMSRMK----ISFDVASFNCIIDSYCQRGN 594

Query: 120 VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           V E F + ++M +     +    G ++  LC+ G    A   +  + ++       + N+
Sbjct: 595 VLEAFSVYDNMVRHGWPPDICTYGSLLRGLCQGGHLVQAKEFMVYLLEKACAIDEKTLNT 654

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++ G+CKHG    A  L E+ +    LP  +TY +L++G C    +  A  +LQ ML K 
Sbjct: 655 LLVGICKHGTLDEALDLCEKMVTRNILPDTYTYTILLDGFCKRGKVVPALILLQMMLEKG 714

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQ----PDVITLNTVINGFCKMGRI 295
            V  T      L  L    N  ++        +  C+     D I  N+++NG+ K G+I
Sbjct: 715 LVPDTIAYTCLLNGLV---NEGQVKAASYMFQEIICKEGLYADCIAYNSMMNGYLKGGQI 771

Query: 296 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN 355
            E  +++ +M   +   P + ++  ++ G +  G++   L  LY+ M + G  P  VTY 
Sbjct: 772 NEIERLMRNMHENEV-YPSSASYNILMHGYIKKGQLSRTL-YLYRDMVKEGIKPDNVTYR 829

Query: 356 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP 415
            ++ GL     +E A +    M+  GV  D+  + I+I    E +++  A + +  + W 
Sbjct: 830 LLIFGLCEYGLIEIAVKFLEKMVLEGVFPDNLAFDILIKAFSEKSKMSNALQLFSYMKWV 889

Query: 416 SNIHDNY----------------VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCY 459
            +I   +                  +++++GLC+ GK+ EA+     ++ +G+ P I  +
Sbjct: 890 GDIDGAFELKEDMKALGVVPSEVAESSIVRGLCKCGKVEEAIIVFSSIMRAGMVPTIATF 949

Query: 460 NVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
             ++ G CK     +A+ + + M   GL  D VT+ +L
Sbjct: 950 TTLMHGLCKEFKIDDAFHLKQLMESCGLKVDVVTYNVL 987



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 126/501 (25%), Positives = 234/501 (46%), Gaps = 51/501 (10%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   ++ +A  +   MK+   +PN V+Y T+++ Y + G    A ++ D+M   G+
Sbjct: 237 LNSLCTQGKLSKAESMLQKMKN-CRLPNAVTYNTILNWYVKKGRCKSALRILDDMEKNGI 295

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             +  TY++++  + + +   RA +L+    +RM+E  +L+ +  ++  L+     EG +
Sbjct: 296 EADLYTYNIMIDKLCKLKRSARAYLLL----KRMREV-NLTPDECSYNTLIHGFFGEGKI 350

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           N    I   M                                    ++ L PS+ +Y ++
Sbjct: 351 NLAIYIFNQM-----------------------------------LRQSLKPSVATYTAL 375

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK- 239
           + G C++G    A ++L E    G  PSE TY  L+ G C  S L  A  +++++ S+  
Sbjct: 376 IDGYCRNGRTDEARRVLYEMQITGVRPSELTYSALLNGYCKHSKLGPALDLIKYLRSRSI 435

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
            ++RT +  I +   C +   ++   +L  ML     PDVIT + +ING CKMG I E  
Sbjct: 436 SINRT-MYTILIDGFCQLGEVSKAKQILKCMLADGIDPDVITYSALINGMCKMGMIHETK 494

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           ++L+ M       P+ V +TT++F     G  +EAL     +  + G     V +NA+L 
Sbjct: 495 EILSRMQKSGV-LPNNVLYTTLVFYFCKAGHAKEALKYFVDIY-RSGLVANSVIHNALLC 552

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV---WPS 416
             +R   + EA++    M  + +  D  ++  +ID  C+   + EA   +D++V   WP 
Sbjct: 553 SFYREGMIAEAEQFKQYMSRMKISFDVASFNCIIDSYCQRGNVLEAFSVYDNMVRHGWPP 612

Query: 417 NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAY 476
           +I     Y ++++GLC+ G + +A  F+  L++     +    N ++ G CK     EA 
Sbjct: 613 DI---CTYGSLLRGLCQGGHLVQAKEFMVYLLEKACAIDEKTLNTLLVGICKHGTLDEAL 669

Query: 477 QILREMRKNGLNPDAVTWRIL 497
            +  +M    + PD  T+ IL
Sbjct: 670 DLCEKMVTRNILPDTYTYTIL 690



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 123/519 (23%), Positives = 230/519 (44%), Gaps = 34/519 (6%)

Query: 4    LCGLSRVG---EAHKLFFDMKSRGHVP-NVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCG 59
            LC   R G   EA + F    SR  +  +V S+  +I  YC+ G +  A+ V+D M   G
Sbjct: 551  LCSFYREGMIAEAEQ-FKQYMSRMKISFDVASFNCIIDSYCQRGNVLEAFSVYDNMVRHG 609

Query: 60   VLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGY 119
              P+  TY  L+RG+ +   + +A   M  L E+       +++      L+  +C+ G 
Sbjct: 610  WPPDICTYGSLLRGLCQGGHLVQAKEFMVYLLEKA-----CAIDEKTLNTLLVGICKHGT 664

Query: 120  VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
            ++E   + E M     + + +    ++D  C+ G+   A  ++ +M ++GL P  ++Y  
Sbjct: 665  LDEALDLCEKMVTRNILPDTYTYTILLDGFCKRGKVVPALILLQMMLEKGLVPDTIAYTC 724

Query: 180  IVHGLCKHGGCMRAYQLLEEGI-QFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
            +++GL   G    A  + +E I + G       Y  ++ G      + +  ++++ M   
Sbjct: 725  LLNGLVNEGQVKAASYMFQEIICKEGLYADCIAYNSMMNGYLKGGQINEIERLMRNMHEN 784

Query: 239  KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
            +    +   NI +         +  L +   M++   +PD +T   +I G C+ G IE A
Sbjct: 785  EVYPSSASYNILMHGYIKKGQLSRTLYLYRDMVKEGIKPDNVTYRLLIFGLCEYGLIEIA 844

Query: 299  LKVLNDMV-AGKFCAPDAVTFTTIIFGLLNVGRIQEALNL---------------LYQVM 342
            +K L  MV  G F  PD + F  +I       ++  AL L               L + M
Sbjct: 845  VKFLEKMVLEGVF--PDNLAFDILIKAFSEKSKMSNALQLFSYMKWVGDIDGAFELKEDM 902

Query: 343  PQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQL 402
               G  P  V  ++++RGL +  +VEEA  VF+ ++  G+V    T+  ++ GLC+  ++
Sbjct: 903  KALGVVPSEVAESSIVRGLCKCGKVEEAIIVFSSIMRAGMVPTIATFTTLMHGLCKEFKI 962

Query: 403  DEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVV 462
            D+A      +       D   Y  +I GLC    I +A+    E+   G+ PNI  Y  +
Sbjct: 963  DDAFHLKQLMESCGLKVDVVTYNVLITGLCNKKCICDALDLYEEMKSKGLLPNITTYITL 1022

Query: 463  IDGACKLSMKREAYQILREMRKNGL-----NPDAVTWRI 496
                      ++  ++L+++   G+     +P+++ WR+
Sbjct: 1023 TGAMYATGTMQDGEKLLKDIEDRGIVPSYKHPESLEWRM 1061



 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 112/489 (22%), Positives = 218/489 (44%), Gaps = 51/489 (10%)

Query: 22  SRGHVPNVVSYTTLIHGYCRTGE-MDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDV 80
           SR    N+ S   L++ Y + G+ +D A  +F  M  CG   +  + + ++  ++    +
Sbjct: 153 SRCDPTNLFSVDLLVNAYVKEGKVLDAAAAIF-FMDECGFKASLFSCNNILNALV---GI 208

Query: 81  ERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEF 140
            ++  +   L E +  +  L V       +++SLC +G +++   + + M   +  N   
Sbjct: 209 NKSEYVWLFLKESLDRKFPLDVTTCNI--VLNSLCTQGKLSKAESMLQKMKNCRLPNA-V 265

Query: 141 ACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEG 200
               +++   + GR   A R++  M K G+   L +YN ++  LCK     RAY LL+  
Sbjct: 266 TYNTILNWYVKKGRCKSALRILDDMEKNGIEADLYTYNIMIDKLCKLKRSARAYLLLKRM 325

Query: 201 IQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNP 260
            +    P E +Y  L+ G  GE  +                                   
Sbjct: 326 REVNLTPDECSYNTLIHGFFGEGKIN---------------------------------- 351

Query: 261 TELLNVLVF--MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM-VAGKFCAPDAVT 317
              L + +F  ML+   +P V T   +I+G+C+ GR +EA +VL +M + G    P  +T
Sbjct: 352 ---LAIYIFNQMLRQSLKPSVATYTALIDGYCRNGRTDEARRVLYEMQITG--VRPSELT 406

Query: 318 FTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCM 377
           ++ ++ G     ++  AL+L+ + +  R  S     Y  ++ G  +L  V +AK++  CM
Sbjct: 407 YSALLNGYCKHSKLGPALDLI-KYLRSRSISINRTMYTILIDGFCQLGEVSKAKQILKCM 465

Query: 378 LGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKI 437
           L  G+  D  TY+ +I+G+C+   + E K     +     + +N +Y  ++   C++G  
Sbjct: 466 LADGIDPDVITYSALINGMCKMGMIHETKEILSRMQKSGVLPNNVLYTTLVFYFCKAGHA 525

Query: 438 HEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            EA+ +  ++  SG+  N V +N ++    +  M  EA Q  + M +  ++ D  ++  +
Sbjct: 526 KEALKYFVDIYRSGLVANSVIHNALLCSFYREGMIAEAEQFKQYMSRMKISFDVASFNCI 585

Query: 498 DKLHGNRGN 506
              +  RGN
Sbjct: 586 IDSYCQRGN 594


>gi|22128587|gb|AAM52339.1| fertility restorer [Petunia x hybrida]
          Length = 592

 Score =  187 bits (476), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 119/487 (24%), Positives = 233/487 (47%), Gaps = 50/487 (10%)

Query: 12  EAHKLFFDMKSRGHVP-NVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVL 70
           E HKL         +P +  + +T+++  C     D+ + V       G+  N +T++ L
Sbjct: 97  EIHKL--------RIPVDAFALSTVVNSCCLMHRTDLGFSVLAIHFKKGIPYNEVTFTTL 148

Query: 71  VRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDM 130
           +RG+     V+ A      L++++  E     +   +  ++D LC++G+  + F +   M
Sbjct: 149 IRGLFAENKVKDA----VHLFKKLVRENICEPDEVMYGTVMDGLCKKGHTQKAFDLLRLM 204

Query: 131 PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGC 190
            QG +  +      +ID+ C+ G   GA+ ++  M+++ + P +++Y S++ GL K    
Sbjct: 205 EQGITKPDTCIYNIVIDAFCKDGMLDGATSLLNEMKQKNIPPDIITYTSLIDGLGKLSQW 264

Query: 191 MRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIY 250
            +   L  E I     P   T+  +++GLC E  +E A +++ +M+ K            
Sbjct: 265 EKVRTLFLEMIHLNIYPDVCTFNSVIDGLCKEGKVEDAEEIMTYMIEK------------ 312

Query: 251 LRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKF 310
                                    +P+ IT N V++G+C  G++  A ++ + M+  K 
Sbjct: 313 -----------------------GVEPNEITYNVVMDGYCLRGQMGRARRIFDSMI-DKG 348

Query: 311 CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEA 370
             PD +++T +I G +   ++ +A+ L  ++  Q G  P IVT + +LRGLF + R E A
Sbjct: 349 IEPDIISYTALINGYVEKKKMDKAMQLFREI-SQNGLKPSIVTCSVLLRGLFEVGRTECA 407

Query: 371 KEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKG 430
           K  F+ M   G + +  T+  ++ G  ++  ++EA   +  +       +  +Y A+I G
Sbjct: 408 KIFFDEMQAAGHIPNLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVING 467

Query: 431 LCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD 490
           LC++GK+ +A     +L   G+ P+++ Y  +I G C+  +  EA  +LR+M  NG  PD
Sbjct: 468 LCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLPD 527

Query: 491 AVTWRIL 497
             T+ ++
Sbjct: 528 NRTYNVI 534



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 99/407 (24%), Positives = 188/407 (46%), Gaps = 39/407 (9%)

Query: 88  FKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMID 147
           F L+ +M   + L  +  +F+ L+ +L    + + V  I  ++ + +   + FA   +++
Sbjct: 57  FSLFRQMVTTKPLP-SAVSFSKLLKALVHMKHYSSVVSIFREIHKLRIPVDAFALSTVVN 115

Query: 148 SLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL- 206
           S C   R      V+ +  K+G+  + V++ +++ GL        A  L ++ ++     
Sbjct: 116 SCCLMHRTDLGFSVLAIHFKKGIPYNEVTFTTLIRGLFAENKVKDAVHLFKKLVRENICE 175

Query: 207 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 266
           P E  Y  +++GLC +   +KA                                    ++
Sbjct: 176 PDEVMYGTVMDGLCKKGHTQKA-----------------------------------FDL 200

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
           L  M Q   +PD    N VI+ FCK G ++ A  +LN+M   K   PD +T+T++I GL 
Sbjct: 201 LRLMEQGITKPDTCIYNIVIDAFCKDGMLDGATSLLNEM-KQKNIPPDIITYTSLIDGLG 259

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
            + + ++   L  +++    Y P + T+N+V+ GL +  +VE+A+E+   M+  GV  + 
Sbjct: 260 KLSQWEKVRTLFLEMIHLNIY-PDVCTFNSVIDGLCKEGKVEDAEEIMTYMIEKGVEPNE 318

Query: 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE 446
            TY +V+DG C   Q+  A+R +D ++      D   Y A+I G     K+ +A+    E
Sbjct: 319 ITYNVVMDGYCLRGQMGRARRIFDSMIDKGIEPDIISYTALINGYVEKKKMDKAMQLFRE 378

Query: 447 LVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVT 493
           +  +G+ P+IV  +V++ G  ++     A     EM+  G  P+  T
Sbjct: 379 ISQNGLKPSIVTCSVLLRGLFEVGRTECAKIFFDEMQAAGHIPNLYT 425



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 104/408 (25%), Positives = 181/408 (44%), Gaps = 19/408 (4%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           MD LC      +A  L   M+     P+   Y  +I  +C+ G +D A  + +EM+   +
Sbjct: 185 MDGLCKKGHTQKAFDLLRLMEQGITKPDTCIYNIVIDAFCKDGMLDGATSLLNEMKQKNI 244

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TY+ L+ G+ +    E+   L  ++        ++  +   F +++D LC+EG V
Sbjct: 245 PPDIITYTSLIDGLGKLSQWEKVRTLFLEMIHL-----NIYPDVCTFNSVIDGLCKEGKV 299

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +   I   M +      E     ++D  C  G+   A R+   M  +G+ P ++SY ++
Sbjct: 300 EDAEEIMTYMIEKGVEPNEITYNVVMDGYCLRGQMGRARRIFDSMIDKGIEPDIISYTAL 359

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++G  +     +A QL  E  Q G  PS  T  VL+ GL      E A+     M +   
Sbjct: 360 INGYVEKKKMDKAMQLFREISQNGLKPSIVTCSVLLRGLFEVGRTECAKIFFDEMQAA-- 417

Query: 241 VDRTRICNIYLRALCL---IKNP--TELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 295
                I N+Y     L    KN    E ++    + + +   ++     VING CK G++
Sbjct: 418 ---GHIPNLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVINGLCKNGKL 474

Query: 296 EEALKVLNDM-VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTY 354
           ++A      + + G    PD +T+T +I G    G + EA ++L + M   G  P   TY
Sbjct: 475 DKAHATFEKLPLIG--LHPDVITYTAMISGYCQEGLLDEAKDMLRK-MEDNGCLPDNRTY 531

Query: 355 NAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQL 402
           N ++RG FR  +V E K     + G     ++ T  +++D + E   L
Sbjct: 532 NVIVRGFFRSSKVSEMKAFLKEIAGKSFSFEAATVELLMDIIAEDPSL 579



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 93/438 (21%), Positives = 192/438 (43%), Gaps = 42/438 (9%)

Query: 27  PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVL 86
           P+ V Y T++ G C+ G    A+ +   M      P++  Y++++    +   ++ A  L
Sbjct: 176 PDEVMYGTVMDGLCKKGHTQKAFDLLRLMEQGITKPDTCIYNIVIDAFCKDGMLDGATSL 235

Query: 87  MFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMI 146
           + ++     +++++  +   + +L+D L +     +V  +  +M       +      +I
Sbjct: 236 LNEM-----KQKNIPPDIITYTSLIDGLGKLSQWEKVRTLFLEMIHLNIYPDVCTFNSVI 290

Query: 147 DSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL 206
           D LC+ G+   A  ++  M ++G+ P+ ++YN ++ G C  G   RA ++ +  I  G  
Sbjct: 291 DGLCKEGKVEDAEEIMTYMIEKGVEPNEITYNVVMDGYCLRGQMGRARRIFDSMIDKGIE 350

Query: 207 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 266
           P   +Y  L+ G   +  ++KA ++ +                                 
Sbjct: 351 PDIISYTALINGYVEKKKMDKAMQLFR--------------------------------- 377

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
              + Q   +P ++T + ++ G  ++GR E A    ++M A     P+  T  T++ G  
Sbjct: 378 --EISQNGLKPSIVTCSVLLRGLFEVGRTECAKIFFDEMQAAGH-IPNLYTHCTLLGGYF 434

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
             G ++EA++  ++ + +R     I  Y AV+ GL +  ++++A   F  +  IG+  D 
Sbjct: 435 KNGLVEEAMSHFHK-LERRREDTNIQIYTAVINGLCKNGKLDKAHATFEKLPLIGLHPDV 493

Query: 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE 446
            TY  +I G C+   LDEAK     +     + DN  Y  +++G  RS K+ E   FL E
Sbjct: 494 ITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLPDNRTYNVIVRGFFRSSKVSEMKAFLKE 553

Query: 447 LVDSGVTPNIVCYNVVID 464
           +     +       +++D
Sbjct: 554 IAGKSFSFEAATVELLMD 571


>gi|359494794|ref|XP_002267896.2| PREDICTED: pentatricopeptide repeat-containing protein At3g07290,
           mitochondrial [Vitis vinifera]
          Length = 876

 Score =  187 bits (476), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 128/474 (27%), Positives = 230/474 (48%), Gaps = 43/474 (9%)

Query: 33  TTLIHGYCRTGEMDVAYKVFDEM-RHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLW 91
           T+L+   CR  ++  A++VF++M +     PNS+TYS+L+ G+     +E A    F+L 
Sbjct: 210 TSLVLANCRRDDLGEAFRVFEKMSKEENCRPNSVTYSILIHGLCEAGRLEEA----FQLK 265

Query: 92  ERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCR 151
           + M E+     +   +  L+ + C  G  ++  ++ ++M     V        +ID LCR
Sbjct: 266 QEMVEK-GCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCR 324

Query: 152 SGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHT 211
            G+   A+ V   M K GL P ++++N++++G CK G  + A+QLL    +    P+  T
Sbjct: 325 EGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRT 384

Query: 212 YKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFML 271
           Y  L+EGLC  S   KA     F+L ++ VD   +                         
Sbjct: 385 YNELMEGLCRVSKSYKA-----FLLLRRVVDNGLL------------------------- 414

Query: 272 QTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRI 331
                PD +T N +++GFCK G++  A  + N M +     PD  TFT +I GL  +GR+
Sbjct: 415 -----PDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGL-EPDGFTFTALIDGLCKLGRL 468

Query: 332 QEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAI 391
           ++A N +   M ++G S   VT+ A++ G  ++ + ++   +F  M+    +  + T+  
Sbjct: 469 EQA-NGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNC 527

Query: 392 VIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 451
            +D L +  +L+EA      ++    +     +  +I+G CR+G+   ++  L  +  +G
Sbjct: 528 FLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAG 587

Query: 452 VTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
            +PN+  Y ++I+G C      EA  IL  M   G++P+  T+ +L K H   G
Sbjct: 588 CSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAG 641



 Score =  177 bits (450), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 146/535 (27%), Positives = 234/535 (43%), Gaps = 51/535 (9%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R+ EA +L  +M  +G  P+  +YT LI   C  G  D A K+ DEM     +PN
Sbjct: 252 LCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPN 311

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             TY++L+  + R   +E AN +  K+ +       L      F  L++  C+EG+V   
Sbjct: 312 VHTYTILIDRLCREGKIEEANGVFRKMLKH-----GLCPGIITFNALINGYCKEGWVVSA 366

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           F++   M +G           +++ LCR  +++ A  ++  +   GL P  V+YN +V G
Sbjct: 367 FQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDG 426

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK----- 238
            CK G    A+ +       G  P   T+  L++GLC    LE+A  +L  M+ K     
Sbjct: 427 FCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLD 486

Query: 239 -----------------KDV-------------DRTRICNIYLRALCLIKNPTELLNVLV 268
                            KDV                   N +L AL       E   +L 
Sbjct: 487 EVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLG 546

Query: 269 FMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNV 328
            M++    P V+T   +I G C+ G    +LK+L  M     C+P+  T+T II GL N 
Sbjct: 547 KMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAG-CSPNVYTYTIIINGLCNN 605

Query: 329 GRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTT 388
           GR++EA  +L+  M   G SP   TY  +++   +  R++ A ++ + M+  G   +S  
Sbjct: 606 GRVEEAETILFS-MSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHI 664

Query: 389 YAIVIDGLCESNQLDEAKRF-----WDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
           Y+ ++ G   SN    A+        D     S  +DN   ++ +    R   +  A+  
Sbjct: 665 YSALLSGFVLSNTAIGARALSSTGDLDARSLSSEENDNNCLSSHV---FRLMDVDHALKI 721

Query: 444 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILD 498
             E+   GV P    YN ++ G CK     EA Q+ ++M K+GL PD     I++
Sbjct: 722 RDEIKKCGV-PTEDLYNFLVVGLCKEGRIIEADQLTQDMVKHGLFPDKAISSIIE 775



 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 128/528 (24%), Positives = 233/528 (44%), Gaps = 47/528 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D+LC   ++ EA+ +F  M   G  P ++++  LI+GYC+ G +  A+++   M     
Sbjct: 319 IDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNC 378

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN  TY+ L+ G+ R     +A +L+     R   +  L  +   +  LVD  C+EG +
Sbjct: 379 KPNIRTYNELMEGLCRVSKSYKAFLLL-----RRVVDNGLLPDRVTYNILVDGFCKEGQL 433

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           N  F I   M       + F    +ID LC+ GR   A+ ++  M K+G++   V++ ++
Sbjct: 434 NMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTAL 493

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G CK G       L E  ++   L + HT+   ++ L  +  L +A  +L  M+    
Sbjct: 494 IDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGL 553

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           V       I +   C        L +L  M Q  C P+V T   +ING C  GR+EEA  
Sbjct: 554 VPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAET 613

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +L  M +    +P+  T+  ++   +  GR+  A  ++   M + G  P    Y+A+L G
Sbjct: 614 ILFSMSSFGV-SPNHFTYAVLVKAHVKAGRLDRAFQIV-STMVKNGCQPNSHIYSALLSG 671

Query: 361 -------------------------------------LFRLRRVEEAKEVFNCMLGIGVV 383
                                                +FRL  V+ A ++ + +   GV 
Sbjct: 672 FVLSNTAIGARALSSTGDLDARSLSSEENDNNCLSSHVFRLMDVDHALKIRDEIKKCGVP 731

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
            +   Y  ++ GLC+  ++ EA +   D+V      D  + +++I+  C++ K    + F
Sbjct: 732 TED-LYNFLVVGLCKEGRIIEADQLTQDMVKHGLFPDKAI-SSIIEHYCKTCKYDNCLEF 789

Query: 444 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM-RKNGLNPD 490
           +  ++D+   P+   Y  VI G       +EA +++ ++ R  G+  +
Sbjct: 790 MKLVLDNKFVPSFASYCWVIHGLRNEGRVQEAQKLVSDLVRHTGIEEE 837



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 126/424 (29%), Positives = 198/424 (46%), Gaps = 14/424 (3%)

Query: 88  FKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFA-----C 142
           F ++ RM  E    +    +  +V++LC+ G+V      A +M   K +   F      C
Sbjct: 156 FLVYRRMVNE-GFVLGGIDYRTVVNALCKNGFVQ-----AAEMFCCKVLRLGFGLDTHVC 209

Query: 143 GHMIDSLCRSGRNHGASRVVYVMRKR-GLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGI 201
             ++ + CR      A RV   M K     P+ V+Y+ ++HGLC+ G    A+QL +E +
Sbjct: 210 TSLVLANCRRDDLGEAFRVFEKMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMV 269

Query: 202 QFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPT 261
           + G  PS  TY VL++  C     +KA K+L  M +K  V       I +  LC      
Sbjct: 270 EKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIE 329

Query: 262 ELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTI 321
           E   V   ML+    P +IT N +ING+CK G +  A ++L+ M  G  C P+  T+  +
Sbjct: 330 EANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGN-CKPNIRTYNEL 388

Query: 322 IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG 381
           + GL  V +  +A  LL +V+   G  P  VTYN ++ G  +  ++  A  +FN M   G
Sbjct: 389 MEGLCRVSKSYKAFLLLRRVV-DNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAG 447

Query: 382 VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAV 441
           +  D  T+  +IDGLC+  +L++A      +V      D   + A+I G C+ GK  +  
Sbjct: 448 LEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVC 507

Query: 442 HFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLH 501
                +V++        +N  +D   K     EA  +L +M K GL P  VT  IL + H
Sbjct: 508 FLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGH 567

Query: 502 GNRG 505
              G
Sbjct: 568 CRAG 571



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 109/467 (23%), Positives = 219/467 (46%), Gaps = 8/467 (1%)

Query: 32  YTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLW 91
           Y+TL+    +     VA+ V+  M + G +   + Y  +V  + +   V+ A +   K+ 
Sbjct: 139 YSTLLMCLAKLNMGFVAFLVYRRMVNEGFVLGGIDYRTVVNALCKNGFVQAAEMFCCKVL 198

Query: 92  ERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVN-EEFACGHMIDSLC 150
                     ++     +LV + CR   + E FR+ E M + ++          +I  LC
Sbjct: 199 RL-----GFGLDTHVCTSLVLANCRRDDLGEAFRVFEKMSKEENCRPNSVTYSILIHGLC 253

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
            +GR   A ++   M ++G  PS  +Y  ++   C  G   +A ++L+E      +P+ H
Sbjct: 254 EAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVH 313

Query: 211 TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM 270
           TY +L++ LC E  +E+A  V + ML           N  +   C          +L  M
Sbjct: 314 TYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVM 373

Query: 271 LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR 330
            +  C+P++ T N ++ G C++ +  +A  +L  +V      PD VT+  ++ G    G+
Sbjct: 374 EKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGL-LPDRVTYNILVDGFCKEGQ 432

Query: 331 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYA 390
           +  A N+ +  M   G  P   T+ A++ GL +L R+E+A  +   M+  G+  D  T+ 
Sbjct: 433 LNMAFNI-FNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFT 491

Query: 391 IVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 450
            +IDG C+  +  +    ++++V    +   + +   +  L +  K++EA   L +++  
Sbjct: 492 ALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKY 551

Query: 451 GVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           G+ P++V + ++I+G C+      + ++L  M++ G +P+  T+ I+
Sbjct: 552 GLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTII 598



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 112/276 (40%), Gaps = 54/276 (19%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   RV EA  + F M S G  PN  +Y  L+  + + G +D A+++   M   G 
Sbjct: 599 INGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGC 658

Query: 61  LPNSLTYSVLVRG-------------------------------------VLRTRDVERA 83
            PNS  YS L+ G                                     V R  DV+ A
Sbjct: 659 QPNSHIYSALLSGFVLSNTAIGARALSSTGDLDARSLSSEENDNNCLSSHVFRLMDVDHA 718

Query: 84  NVLMFKLWERMKE----EEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
                K+ + +K+     EDL      +  LV  LC+EG + E  ++ +DM +   +  +
Sbjct: 719 ----LKIRDEIKKCGVPTEDL------YNFLVVGLCKEGRIIEADQLTQDMVK-HGLFPD 767

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
            A   +I+  C++ +       + ++      PS  SY  ++HGL   G    A +L+ +
Sbjct: 768 KAISSIIEHYCKTCKYDNCLEFMKLVLDNKFVPSFASYCWVIHGLRNEGRVQEAQKLVSD 827

Query: 200 GIQFGYLPSEHTYKVLVEGLCGES--DLEKARKVLQ 233
            ++   +  E      +E L  E   D +K  K+++
Sbjct: 828 LVRHTGIEEEVEVTPSIEFLMKEEEDDPDKCLKLIK 863


>gi|326510071|dbj|BAJ87252.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 825

 Score =  187 bits (476), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 132/486 (27%), Positives = 227/486 (46%), Gaps = 8/486 (1%)

Query: 13  AHKL--FFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVL 70
           AH L  F  M   G  PN  +Y TLI+ +C+   +  A      MR  G+ P++ TY+ L
Sbjct: 72  AHLLASFGAMLKSGAPPNRCTYNTLINAHCKLALLADARAALVRMREAGLAPDTFTYNCL 131

Query: 71  VRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDM 130
           + G+ R   +  A  L  ++  R     D      ++  L+  LC  G +++  R+   M
Sbjct: 132 MLGLCRAGLLAAACGLFVQMPRRWGACYD----RYSYTILIKGLCAAGRIDDACRVFAKM 187

Query: 131 PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGC 190
            +G           ++D LC+  R   A  ++  M  +G+ P++V+YN+++ GLC+ G  
Sbjct: 188 SRGWCRPGVHTYTVLLDGLCKVRRVGEAEALLGEMVNKGVVPNVVTYNALIGGLCQEGRF 247

Query: 191 MRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIY 250
               +LLE+     + P   TY  +V GLC    +    KVL   + K         N  
Sbjct: 248 DDVTKLLEKMEIQRHSPDCWTYTQVVHGLCKHGKVGHGAKVLHEAIGKGVALEVLTYNAL 307

Query: 251 LRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKF 310
           +   C   +    L+VL  M + +  P V T N VI+GFC  G++ +A+  L  M AG  
Sbjct: 308 INGYCKGGDMKAALDVLQLMKRNRVNPGVQTFNEVIHGFCCGGKVHKAMAFLTQM-AGAG 366

Query: 311 CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEA 370
            +P+ VTF ++I G  +VG  + AL LL  +M + G  P   TY   +  L    ++EEA
Sbjct: 367 LSPNTVTFNSLISGQCSVGERKIALRLL-DLMEEYGVLPDRQTYAIFIDALCDEGQLEEA 425

Query: 371 KEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKG 430
             +F+C+   G+ A +  Y  ++ G C+   +D A    + +   + + D + Y  +I G
Sbjct: 426 HSLFSCLPMKGIKAHNVIYTSLVHGYCQVGDIDSAFGLMEKMASENCMPDVHTYNTLIDG 485

Query: 431 LCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD 490
           LC+  ++  A+  L ++   G+ P    +N++I          +A ++  +M  +G  PD
Sbjct: 486 LCKVKRLDRAIDLLDKMKKQGIEPTTCTFNILIKQMLWDKKHADAAKMYEQMISSGCKPD 545

Query: 491 AVTWRI 496
             T+ +
Sbjct: 546 KQTYTL 551



 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 132/541 (24%), Positives = 232/541 (42%), Gaps = 60/541 (11%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC + RVGEA  L  +M ++G VPNVV+Y  LI G C+ G  D   K+ ++M     
Sbjct: 203 LDGLCKVRRVGEAEALLGEMVNKGVVPNVVTYNALIGGLCQEGRFDDVTKLLEKMEIQRH 262

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+  TY+ +V G+ +   V     ++ +   +    E L+ N      L++  C+ G +
Sbjct: 263 SPDCWTYTQVVHGLCKHGKVGHGAKVLHEAIGKGVALEVLTYNA-----LINGYCKGGDM 317

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                + + M + +          +I   C  G+ H A   +  M   GL+P+ V++NS+
Sbjct: 318 KAALDVLQLMKRNRVNPGVQTFNEVIHGFCCGGKVHKAMAFLTQMAGAGLSPNTVTFNSL 377

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G C  G    A +LL+   ++G LP   TY + ++ LC E  LE+A  +   +  K  
Sbjct: 378 ISGQCSVGERKIALRLLDLMEEYGVLPDRQTYAIFIDALCDEGQLEEAHSLFSCLPMKGI 437

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                I    +   C + +      ++  M    C PDV T NT+I+G CK+ R++ A+ 
Sbjct: 438 KAHNVIYTSLVHGYCQVGDIDSAFGLMEKMASENCMPDVHTYNTLIDGLCKVKRLDRAID 497

Query: 301 VLNDMV--------------------------AGKF--------CAPDAVTFT-TIIFGL 325
           +L+ M                           A K         C PD  T+T  I    
Sbjct: 498 LLDKMKKQGIEPTTCTFNILIKQMLWDKKHADAAKMYEQMISSGCKPDKQTYTLKISTDW 557

Query: 326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 385
                 +E +++    M + G  P + TYNA+++        E+A      ML + +  D
Sbjct: 558 FEGATKEENIDMAVVEMHEAGVFPDVETYNAIIKAYVDAGLKEKAFFAHVKMLSVPIDPD 617

Query: 386 STTYAIVIDGLCESNQLDEAKRFWDDIVWP----SNIHDNY-------------VYAAMI 428
            TTY+I+++ +C     D++  F ++ +W      N+ + +              Y A++
Sbjct: 618 CTTYSILLNYMCNK---DDSDAFDNEKIWKMVDVRNLQELFEQMCESDAAPGISTYKALL 674

Query: 429 KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLN 488
           +GLC   ++ E    L ++  + +  +    + ++   C L M REA +  R M      
Sbjct: 675 RGLCNQCRLEEVEWLLLKMQGNSILLDEDMSDYLLGCYCNLEMYREACEQFRSMAHQSFQ 734

Query: 489 P 489
           P
Sbjct: 735 P 735



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 119/495 (24%), Positives = 223/495 (45%), Gaps = 42/495 (8%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHV-PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           LC   R+ +A ++F  M SRG   P V +YT L+ G C+   +  A  +  EM + GV+P
Sbjct: 171 LCAAGRIDDACRVFAKM-SRGWCRPGVHTYTVLLDGLCKVRRVGEAEALLGEMVNKGVVP 229

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           N +TY+ L+ G+ +    +       KL E+M E +  S +   +  +V  LC+ G V  
Sbjct: 230 NVVTYNALIGGLCQEGRFDDVT----KLLEKM-EIQRHSPDCWTYTQVVHGLCKHGKVGH 284

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
             ++  +        E      +I+  C+ G    A  V+ +M++  + P + ++N ++H
Sbjct: 285 GAKVLHEAIGKGVALEVLTYNALINGYCKGGDMKAALDVLQLMKRNRVNPGVQTFNEVIH 344

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           G C  G   +A   L +    G  P+  T+  L+ G C   + + A ++L  M     + 
Sbjct: 345 GFCCGGKVHKAMAFLTQMAGAGLSPNTVTFNSLISGQCSVGERKIALRLLDLMEEYGVLP 404

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
             +   I++ ALC      E  ++   +     +   +   ++++G+C++G I+ A  ++
Sbjct: 405 DRQTYAIFIDALCDEGQLEEAHSLFSCLPMKGIKAHNVIYTSLVHGYCQVGDIDSAFGLM 464

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
             M A + C PD  T+ T+I GL  V R+  A++LL + M ++G  P   T+N +++ + 
Sbjct: 465 EKM-ASENCMPDVHTYNTLIDGLCKVKRLDRAIDLLDK-MKKQGIEPTTCTFNILIKQML 522

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
             ++  +A +++  M+  G   D  TY + I                    W        
Sbjct: 523 WDKKHADAAKMYEQMISSGCKPDKQTYTLKI-----------------STDW-------- 557

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
                 +G  +   I  AV    E+ ++GV P++  YN +I       +K +A+    +M
Sbjct: 558 -----FEGATKEENIDMAV---VEMHEAGVFPDVETYNAIIKAYVDAGLKEKAFFAHVKM 609

Query: 483 RKNGLNPDAVTWRIL 497
               ++PD  T+ IL
Sbjct: 610 LSVPIDPDCTTYSIL 624



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/256 (29%), Positives = 128/256 (50%), Gaps = 5/256 (1%)

Query: 248 NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA 307
           N  + A C +    +    LV M +    PD  T N ++ G C+ G +  A  +   M  
Sbjct: 94  NTLINAHCKLALLADARAALVRMREAGLAPDTFTYNCLMLGLCRAGLLAAACGLFVQMPR 153

Query: 308 GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYS-PGIVTYNAVLRGLFRLRR 366
                 D  ++T +I GL   GRI +A  +  ++   RG+  PG+ TY  +L GL ++RR
Sbjct: 154 RWGACYDRYSYTILIKGLCAAGRIDDACRVFAKM--SRGWCRPGVHTYTVLLDGLCKVRR 211

Query: 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAA 426
           V EA+ +   M+  GVV +  TY  +I GLC+  + D+  +  + +    +  D + Y  
Sbjct: 212 VGEAEALLGEMVNKGVVPNVVTYNALIGGLCQEGRFDDVTKLLEKMEIQRHSPDCWTYTQ 271

Query: 427 MIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG 486
           ++ GLC+ GK+      L+E +  GV   ++ YN +I+G CK    + A  +L+ M++N 
Sbjct: 272 VVHGLCKHGKVGHGAKVLHEAIGKGVALEVLTYNALINGYCKGGDMKAALDVLQLMKRNR 331

Query: 487 LNPDAVTWRILDKLHG 502
           +NP   T+   + +HG
Sbjct: 332 VNPGVQTFN--EVIHG 345



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 99/451 (21%), Positives = 176/451 (39%), Gaps = 62/451 (13%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C   +V +A      M   G  PN V++ +LI G C  GE  +A ++ D M   GVLP+
Sbjct: 346 FCCGGKVHKAMAFLTQMAGAGLSPNTVTFNSLISGQCSVGERKIALRLLDLMEEYGVLPD 405

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             TY++ +  +     +E A+ L   L       + +  +N  + +LV   C+ G ++  
Sbjct: 406 RQTYAIFIDALCDEGQLEEAHSLFSCL-----PMKGIKAHNVIYTSLVHGYCQVGDIDSA 460

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           F + E M     + +      +ID LC+  R   A  ++  M+K+G+ P+  ++N ++  
Sbjct: 461 FGLMEKMASENCMPDVHTYNTLIDGLCKVKRLDRAIDLLDKMKKQGIEPTTCTFNILIKQ 520

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLV-----EGLCGESDLEKARKVLQFMLSK 238
           +        A ++ E+ I  G  P + TY + +     EG   E +++ A   +      
Sbjct: 521 MLWDKKHADAAKMYEQMISSGCKPDKQTYTLKISTDWFEGATKEENIDMAVVEMHEAGVF 580

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFC-------- 290
            DV+     N  ++A        +     V ML     PD  T + ++N  C        
Sbjct: 581 PDVETY---NAIIKAYVDAGLKEKAFFAHVKMLSVPIDPDCTTYSILLNYMCNKDDSDAF 637

Query: 291 ------KMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLL------ 338
                 KM  +    ++   M      AP   T+  ++ GL N  R++E   LL      
Sbjct: 638 DNEKIWKMVDVRNLQELFEQMCESD-AAPGISTYKALLRGLCNQCRLEEVEWLLLKMQGN 696

Query: 339 ----------------------------YQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEA 370
                                       ++ M  + + PG+ +   +L GL        A
Sbjct: 697 SILLDEDMSDYLLGCYCNLEMYREACEQFRSMAHQSFQPGLKSCCLLLSGLCDSGDHGMA 756

Query: 371 KEVFNCMLGIGVVADSTTYAIVIDGLCESNQ 401
             +F+ MLG+G   D   + ++ID L E   
Sbjct: 757 VSIFSDMLGLGYNYDEVVWKLLIDCLHEKGH 787



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 89/405 (21%), Positives = 165/405 (40%), Gaps = 48/405 (11%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   ++ EAH LF  +  +G   + V YT+L+HGYC+ G++D A+ + ++M     
Sbjct: 413 IDALCDEGQLEEAHSLFSCLPMKGIKAHNVIYTSLVHGYCQVGDIDSAFGLMEKMASENC 472

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVN-------------NAA- 106
           +P+  TY+ L+ G+ + + ++RA  L+ K+ ++  E    + N             +AA 
Sbjct: 473 MPDVHTYNTLIDGLCKVKRLDRAIDLLDKMKKQGIEPTTCTFNILIKQMLWDKKHADAAK 532

Query: 107 -FANLVDSLCREGYVNEVFRIAEDMPQG--KSVNEEFACGHM---------------IDS 148
            +  ++ S C+        +I+ D  +G  K  N + A   M               I +
Sbjct: 533 MYEQMISSGCKPDKQTYTLKISTDWFEGATKEENIDMAVVEMHEAGVFPDVETYNAIIKA 592

Query: 149 LCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLC--------------KHGGCMRAY 194
              +G    A      M    + P   +Y+ +++ +C              K        
Sbjct: 593 YVDAGLKEKAFFAHVKMLSVPIDPDCTTYSILLNYMCNKDDSDAFDNEKIWKMVDVRNLQ 652

Query: 195 QLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRAL 254
           +L E+  +    P   TYK L+ GLC +  LE+   +L  M     +    + +  L   
Sbjct: 653 ELFEQMCESDAAPGISTYKALLRGLCNQCRLEEVEWLLLKMQGNSILLDEDMSDYLLGCY 712

Query: 255 CLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPD 314
           C ++   E       M     QP + +   +++G C  G    A+ + +DM+   +   D
Sbjct: 713 CNLEMYREACEQFRSMAHQSFQPGLKSCCLLLSGLCDSGDHGMAVSIFSDMLGLGY-NYD 771

Query: 315 AVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
            V +  +I  L   G     L +L  VM  +       TY +++R
Sbjct: 772 EVVWKLLIDCLHEKGHAGACLEML-SVMDAKKCVASTRTYASLVR 815



 Score = 39.3 bits (90), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 5/86 (5%)

Query: 415 PSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE---LVDSGVTPNIVCYNVVIDGACKLSM 471
           PS++  +   AA+I    R  +     H L     ++ SG  PN   YN +I+  CKL++
Sbjct: 48  PSDVRSHN--AALIAYSSRGSRAPRLAHLLASFGAMLKSGAPPNRCTYNTLINAHCKLAL 105

Query: 472 KREAYQILREMRKNGLNPDAVTWRIL 497
             +A   L  MR+ GL PD  T+  L
Sbjct: 106 LADARAALVRMREAGLAPDTFTYNCL 131


>gi|357499049|ref|XP_003619813.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494828|gb|AES76031.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 614

 Score =  187 bits (476), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 122/466 (26%), Positives = 235/466 (50%), Gaps = 19/466 (4%)

Query: 27  PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVL 86
           P++ ++  LI+ +C  G ++ A+ V  ++   G  P+++T + L++G+           L
Sbjct: 97  PDLFTFNILINCFCHLGHLNFAFSVLAKIFKLGFHPDTVTITTLIKGL----------CL 146

Query: 87  MFKLWERMKEEEDL-----SVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFA 141
             K+ E +   +D+      ++  ++  L++ LC+ G      ++   +           
Sbjct: 147 NGKVREALHFHDDVIAKGFHLDQVSYGTLINGLCKTGETRAALQVLRKIDGLLVQPNVVM 206

Query: 142 CGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGI 201
              +IDSLC+      AS +   M  + + P +V+Y ++++G    G    A  L  + +
Sbjct: 207 YNTIIDSLCKDKLVIHASDLCSEMIVKRIFPDVVTYTTLIYGCLIVGRLKEAVGLFNQML 266

Query: 202 QFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC-NIYLRALCLIKNP 260
                P  +T+ +LV+GLC E +++KAR VL  M+ K+ VD   +  N  +    L+K  
Sbjct: 267 LKNIKPDVYTFNILVDGLCKEGEMKKARNVLAVMI-KQGVDSNIVTYNSLMDGYFLVKQE 325

Query: 261 TELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTT 320
            +   V   M +    PDV + + +ING CK   ++EA+ +  +M   K  AP+ VT+ +
Sbjct: 326 NKATFVFNTMARRGVTPDVQSYSIMINGLCKTKMVDEAVNLFKEM-HSKSMAPNTVTYNS 384

Query: 321 IIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI 380
           +I GLL  GRI +A +L+ + M  RG    ++TY+++L  L +  +V++A  +   +   
Sbjct: 385 LIDGLLKYGRISDAWDLVNE-MHNRGQPADVITYSSLLDALCKNHQVDKAITLITKIKDQ 443

Query: 381 GVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEA 440
           G+  +  TY I++DGLC++ +L +A+  + D++      D  +Y  M+ GLC+ G   EA
Sbjct: 444 GIQPNIYTYTILVDGLCKNGRLKDAQAVYQDLLIKGYHLDVKMYNVMVNGLCKEGLFDEA 503

Query: 441 VHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG 486
           +  + ++ D+G  P+ V Y  ++    +     +A ++LREM   G
Sbjct: 504 LSLVSKMEDNGCIPDAVTYETLVRALFENDKNDKAVKLLREMIVQG 549



 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 105/391 (26%), Positives = 198/391 (50%), Gaps = 2/391 (0%)

Query: 107 FANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMR 166
           F  ++ SL +  + +     ++ M   +   + F    +I+  C  G  + A  V+  + 
Sbjct: 67  FNKILSSLVKLNHFHTAISFSKQMELKQIQPDLFTFNILINCFCHLGHLNFAFSVLAKIF 126

Query: 167 KRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLE 226
           K G  P  V+  +++ GLC +G    A    ++ I  G+   + +Y  L+ GLC   +  
Sbjct: 127 KLGFHPDTVTITTLIKGLCLNGKVREALHFHDDVIAKGFHLDQVSYGTLINGLCKTGETR 186

Query: 227 KARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVI 286
            A +VL+ +          + N  + +LC  K      ++   M+  +  PDV+T  T+I
Sbjct: 187 AALQVLRKIDGLLVQPNVVMYNTIIDSLCKDKLVIHASDLCSEMIVKRIFPDVVTYTTLI 246

Query: 287 NGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
            G   +GR++EA+ + N M+  K   PD  TF  ++ GL   G +++A N+L  VM ++G
Sbjct: 247 YGCLIVGRLKEAVGLFNQMLL-KNIKPDVYTFNILVDGLCKEGEMKKARNVL-AVMIKQG 304

Query: 347 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
               IVTYN+++ G F +++  +A  VFN M   GV  D  +Y+I+I+GLC++  +DEA 
Sbjct: 305 VDSNIVTYNSLMDGYFLVKQENKATFVFNTMARRGVTPDVQSYSIMINGLCKTKMVDEAV 364

Query: 407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466
             + ++   S   +   Y ++I GL + G+I +A   + E+ + G   +++ Y+ ++D  
Sbjct: 365 NLFKEMHSKSMAPNTVTYNSLIDGLLKYGRISDAWDLVNEMHNRGQPADVITYSSLLDAL 424

Query: 467 CKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           CK     +A  ++ +++  G+ P+  T+ IL
Sbjct: 425 CKNHQVDKAITLITKIKDQGIQPNIYTYTIL 455



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 105/448 (23%), Positives = 203/448 (45%), Gaps = 42/448 (9%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   +V EA     D+ ++G   + VSY TLI+G C+TGE   A +V  ++    V PN
Sbjct: 144 LCLNGKVREALHFHDDVIAKGFHLDQVSYGTLINGLCKTGETRAALQVLRKIDGLLVQPN 203

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            + Y+ ++  + + + V  A+ L  ++  +    + ++     +  L+      G + E 
Sbjct: 204 VVMYNTIIDSLCKDKLVIHASDLCSEMIVKRIFPDVVTYTTLIYGCLI-----VGRLKEA 258

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             +   M       + +    ++D LC+ G    A  V+ VM K+G+  ++V+YNS++ G
Sbjct: 259 VGLFNQMLLKNIKPDVYTFNILVDGLCKEGEMKKARNVLAVMIKQGVDSNIVTYNSLMDG 318

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
                   +A  +     + G  P   +Y +++ GLC    +++A  + + M SK     
Sbjct: 319 YFLVKQENKATFVFNTMARRGVTPDVQSYSIMINGLCKTKMVDEAVNLFKEMHSK----- 373

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                                            P+ +T N++I+G  K GRI +A  ++N
Sbjct: 374 ------------------------------SMAPNTVTYNSLIDGLLKYGRISDAWDLVN 403

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           +M   +    D +T+++++  L    ++ +A+ L+ ++  Q G  P I TY  ++ GL +
Sbjct: 404 EM-HNRGQPADVITYSSLLDALCKNHQVDKAITLITKIKDQ-GIQPNIYTYTILVDGLCK 461

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
             R+++A+ V+  +L  G   D   Y ++++GLC+    DEA      +     I D   
Sbjct: 462 NGRLKDAQAVYQDLLIKGYHLDVKMYNVMVNGLCKEGLFDEALSLVSKMEDNGCIPDAVT 521

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSG 451
           Y  +++ L  + K  +AV  L E++  G
Sbjct: 522 YETLVRALFENDKNDKAVKLLREMIVQG 549



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 84/336 (25%), Positives = 157/336 (46%), Gaps = 30/336 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    V  A  L  +M  +   P+VV+YTTLI+G    G +  A  +F++M    +
Sbjct: 211 IDSLCKDKLVIHASDLCSEMIVKRIFPDVVTYTTLIYGCLIVGRLKEAVGLFNQMLLKNI 270

Query: 61  LPNSLTYSVLVRGVLRTRDVERA-------------------NVLMFKLWERMKEEEDLS 101
            P+  T+++LV G+ +  ++++A                   N LM   +   +E +   
Sbjct: 271 KPDVYTFNILVDGLCKEGEMKKARNVLAVMIKQGVDSNIVTYNSLMDGYFLVKQENKATF 330

Query: 102 VNNA-----------AFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC 150
           V N            +++ +++ LC+   V+E   + ++M              +ID L 
Sbjct: 331 VFNTMARRGVTPDVQSYSIMINGLCKTKMVDEAVNLFKEMHSKSMAPNTVTYNSLIDGLL 390

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
           + GR   A  +V  M  RG    +++Y+S++  LCK+    +A  L+ +    G  P+ +
Sbjct: 391 KYGRISDAWDLVNEMHNRGQPADVITYSSLLDALCKNHQVDKAITLITKIKDQGIQPNIY 450

Query: 211 TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM 270
           TY +LV+GLC    L+ A+ V Q +L K      ++ N+ +  LC      E L+++  M
Sbjct: 451 TYTILVDGLCKNGRLKDAQAVYQDLLIKGYHLDVKMYNVMVNGLCKEGLFDEALSLVSKM 510

Query: 271 LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV 306
               C PD +T  T++    +  + ++A+K+L +M+
Sbjct: 511 EDNGCIPDAVTYETLVRALFENDKNDKAVKLLREMI 546


>gi|297797161|ref|XP_002866465.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297312300|gb|EFH42724.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 977

 Score =  187 bits (476), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 136/570 (23%), Positives = 245/570 (42%), Gaps = 80/570 (14%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLI---------------------HGY 39
           +D LC   R+ +A  L  +M S G   + V+Y+ LI                     HG+
Sbjct: 287 IDGLCKQKRLEDAKSLLVEMNSVGLFADNVAYSILIDGLLKGRNADAANGLVHEMVSHGF 346

Query: 40  C--------------RTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANV 85
                          + G M+ A  +FD M   GV P +  Y+ L+ G  R ++V +   
Sbjct: 347 SIDPMMYDYFICVMSKEGAMEKAKALFDGMITFGVTPGARAYASLIEGFFREKNVRKGYE 406

Query: 86  LMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHM 145
           L+ ++ +R     ++ ++   +   V  +C  G ++  + I ++M              +
Sbjct: 407 LLVEIKKR-----NIVISPYTYGTAVKGMCSSGDLDGAYNIVKEMGASGCRPNVVIYTTL 461

Query: 146 IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY 205
           I +  +  R   A RV+  MR++G+ P    YNS++ GL K      A   L E ++ G+
Sbjct: 462 IKTFLQKSRFGDAVRVLKEMREQGIAPDTFCYNSLIIGLSKAKKMDEARSFLLEMVENGF 521

Query: 206 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 265
            P   TY   + G     +   A K ++ ML    +    +C   +   C      E  +
Sbjct: 522 KPDAFTYGAFISGYIEAGEFASADKYVKEMLECGVIPNKVLCTGLINEYCKKGKVIEACS 581

Query: 266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 325
               M++     D  T   ++NG  K G++ +A ++ ++M  GK  APD  ++ T+I G 
Sbjct: 582 AFRSMVEQGILGDAKTYTVLMNGLVKNGKVNDAEEIFHEM-RGKGIAPDVFSYGTLIDGF 640

Query: 326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 385
             +G +Q+A ++ +  M Q G +  ++ YN +L G  R   +E+AKE+ + M G G   +
Sbjct: 641 SKLGNMQKASSI-FDEMVQAGLTSNVIIYNMLLGGFCRSGEIEKAKELLDEMSGKGFPPN 699

Query: 386 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEA----- 440
           + TY  +IDG C+S  L EA + +D++     + D++VY  ++ G CR   +  A     
Sbjct: 700 AVTYCTIIDGYCKSGDLAEAFQLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFE 759

Query: 441 ----------------VHFLYELVDSGVT-----------------PNIVCYNVVIDGAC 467
                           ++++++   + +T                 PN V YN++ID  C
Sbjct: 760 TNEKGCASSSAPFNALINWVFKFGKTELTTDMINRLMDGSFDKFGKPNDVTYNIMIDYLC 819

Query: 468 KLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           K      A ++   M+K  L P  +T+  L
Sbjct: 820 KEGNLEAAKELFHHMQKANLMPTVITYTSL 849



 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 129/490 (26%), Positives = 230/490 (46%), Gaps = 11/490 (2%)

Query: 10  VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSV 69
           V EA +L   M  +G VP+  SY  LI G C+   ++ A  +  EM   G+  +++ YS+
Sbjct: 261 VDEALELKKSMSCKGLVPSRQSYNLLIDGLCKQKRLEDAKSLLVEMNSVGLFADNVAYSI 320

Query: 70  LVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAED 129
           L+ G+L+ R+ + AN L+ ++          S++   +   +  + +EG + +   + + 
Sbjct: 321 LIDGLLKGRNADAANGLVHEMVSH-----GFSIDPMMYDYFICVMSKEGAMEKAKALFDG 375

Query: 130 MPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG 189
           M          A   +I+   R         ++  ++KR +  S  +Y + V G+C  G 
Sbjct: 376 MITFGVTPGARAYASLIEGFFREKNVRKGYELLVEIKKRNIVISPYTYGTAVKGMCSSGD 435

Query: 190 CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNI 249
              AY +++E    G  P+   Y  L++    +S    A +VL+ M  +     T   N 
Sbjct: 436 LDGAYNIVKEMGASGCRPNVVIYTTLIKTFLQKSRFGDAVRVLKEMREQGIAPDTFCYNS 495

Query: 250 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK 309
            +  L   K   E  + L+ M++   +PD  T    I+G+ + G    A K + +M+   
Sbjct: 496 LIIGLSKAKKMDEARSFLLEMVENGFKPDAFTYGAFISGYIEAGEFASADKYVKEMLE-- 553

Query: 310 FCA--PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRV 367
            C   P+ V  T +I      G++ EA +  ++ M ++G      TY  ++ GL +  +V
Sbjct: 554 -CGVIPNKVLCTGLINEYCKKGKVIEACSA-FRSMVEQGILGDAKTYTVLMNGLVKNGKV 611

Query: 368 EEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAM 427
            +A+E+F+ M G G+  D  +Y  +IDG  +   + +A   +D++V      +  +Y  +
Sbjct: 612 NDAEEIFHEMRGKGIAPDVFSYGTLIDGFSKLGNMQKASSIFDEMVQAGLTSNVIIYNML 671

Query: 428 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
           + G CRSG+I +A   L E+   G  PN V Y  +IDG CK     EA+Q+  EM+  GL
Sbjct: 672 LGGFCRSGEIEKAKELLDEMSGKGFPPNAVTYCTIIDGYCKSGDLAEAFQLFDEMKLKGL 731

Query: 488 NPDAVTWRIL 497
            PD+  +  L
Sbjct: 732 VPDSFVYTTL 741



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 107/486 (22%), Positives = 222/486 (45%), Gaps = 18/486 (3%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           +C    +  A+ +  +M + G  PNVV YTTLI  + +      A +V  EMR  G+ P+
Sbjct: 430 MCSSGDLDGAYNIVKEMGASGCRPNVVIYTTLIKTFLQKSRFGDAVRVLKEMREQGIAPD 489

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           +  Y+ L+ G+ + + ++ A   + ++ E   + +  +     +   +      G     
Sbjct: 490 TFCYNSLIIGLSKAKKMDEARSFLLEMVENGFKPDAFT-----YGAFISGYIEAGEFASA 544

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            +  ++M +   +  +  C  +I+  C+ G+   A      M ++G+     +Y  +++G
Sbjct: 545 DKYVKEMLECGVIPNKVLCTGLINEYCKKGKVIEACSAFRSMVEQGILGDAKTYTVLMNG 604

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           L K+G    A ++  E    G  P   +Y  L++G     +++KA  +   M+       
Sbjct: 605 LVKNGKVNDAEEIFHEMRGKGIAPDVFSYGTLIDGFSKLGNMQKASSIFDEMVQAGLTSN 664

Query: 244 TRICNIYLRALCL---IKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
             I N+ L   C    I+   ELL+    M      P+ +T  T+I+G+CK G + EA +
Sbjct: 665 VIIYNMLLGGFCRSGEIEKAKELLDE---MSGKGFPPNAVTYCTIIDGYCKSGDLAEAFQ 721

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           + ++M   K   PD+  +TT++ G   +  ++ A+ +      ++G +     +NA++  
Sbjct: 722 LFDEMKL-KGLVPDSFVYTTLVDGCCRLNDVERAITIFET--NEKGCASSSAPFNALINW 778

Query: 361 LFRLRRVEEAKEVFNCMLGIGV----VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416
           +F+  + E   ++ N ++          +  TY I+ID LC+   L+ AK  +  +   +
Sbjct: 779 VFKFGKTELTTDMINRLMDGSFDKFGKPNDVTYNIMIDYLCKEGNLEAAKELFHHMQKAN 838

Query: 417 NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAY 476
            +     Y +++ G  + G+  E      E++ +G+ P+ + Y+V+I+   K  M  +A 
Sbjct: 839 LMPTVITYTSLLNGYDKMGRRSEMFSVFDEVIAAGIEPDNIMYSVIINAFLKEGMTTKAL 898

Query: 477 QILREM 482
            +L +M
Sbjct: 899 VLLDQM 904



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 119/484 (24%), Positives = 216/484 (44%), Gaps = 20/484 (4%)

Query: 4   LCGLSR---VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           + GLS+   + EA     +M   G  P+  +Y   I GY   GE   A K   EM  CGV
Sbjct: 497 IIGLSKAKKMDEARSFLLEMVENGFKPDAFTYGAFISGYIEAGEFASADKYVKEMLECGV 556

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +PN +  + L+    +   V  A         R   E+ +  +   +  L++ L + G V
Sbjct: 557 IPNKVLCTGLINEYCKKGKVIEACSAF-----RSMVEQGILGDAKTYTVLMNGLVKNGKV 611

Query: 121 NEVFRIAEDMPQGKSVNEE-FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           N+   I  +M +GK +  + F+ G +ID   + G    AS +   M + GLT +++ YN 
Sbjct: 612 NDAEEIFHEM-RGKGIAPDVFSYGTLIDGFSKLGNMQKASSIFDEMVQAGLTSNVIIYNM 670

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++ G C+ G   +A +LL+E    G+ P+  TY  +++G C   DL +A ++   M  K 
Sbjct: 671 LLGGFCRSGEIEKAKELLDEMSGKGFPPNAVTYCTIIDGYCKSGDLAEAFQLFDEMKLKG 730

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
            V  + +    +   C + N  E    +    +  C       N +IN   K G+ E   
Sbjct: 731 LVPDSFVYTTLVDGCCRL-NDVERAITIFETNEKGCASSSAPFNALINWVFKFGKTELTT 789

Query: 300 KVLNDMVAG---KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
            ++N ++ G   KF  P+ VT+  +I  L   G ++ A  L +  M +    P ++TY +
Sbjct: 790 DMINRLMDGSFDKFGKPNDVTYNIMIDYLCKEGNLEAAKELFHH-MQKANLMPTVITYTS 848

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416
           +L G  ++ R  E   VF+ ++  G+  D+  Y+++I+   +     +A    D +   +
Sbjct: 849 LLNGYDKMGRRSEMFSVFDEVIAAGIEPDNIMYSVIINAFLKEGMTTKALVLLDQMFAKN 908

Query: 417 NIHDNYVYA-----AMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSM 471
            + D    +     A++ G  + G++  A   +  +V     P+      +I+ +C  S 
Sbjct: 909 AVDDGCKLSISTCRALLSGFAKVGEMEVAEKVVENMVRLKYIPDSSTVIELINESCISSN 968

Query: 472 KREA 475
           +R A
Sbjct: 969 QRMA 972



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 113/481 (23%), Positives = 210/481 (43%), Gaps = 21/481 (4%)

Query: 26  VPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANV 85
           VP++     L+    +   +D+ + V+  M    V+ +  +Y +L+    R  +V+ A  
Sbjct: 186 VPSLARCNHLLDALLKRNRLDLFWDVYKGMVERNVVFDVQSYEMLIGAHCRDGNVQLAKD 245

Query: 86  LMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHM 145
           ++ K  E +     L+V+ A    L  S+  +G V          P  +S N       +
Sbjct: 246 VLLKTEEELGTAT-LNVDEAL--ELKKSMSCKGLV----------PSRQSYN------LL 286

Query: 146 IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY 205
           ID LC+  R   A  ++  M   GL    V+Y+ ++ GL K      A  L+ E +  G+
Sbjct: 287 IDGLCKQKRLEDAKSLLVEMNSVGLFADNVAYSILIDGLLKGRNADAANGLVHEMVSHGF 346

Query: 206 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 265
                 Y   +  +  E  +EKA+ +   M++       R     +      KN  +   
Sbjct: 347 SIDPMMYDYFICVMSKEGAMEKAKALFDGMITFGVTPGARAYASLIEGFFREKNVRKGYE 406

Query: 266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 325
           +LV + +        T  T + G C  G ++ A  ++ +M A   C P+ V +TT+I   
Sbjct: 407 LLVEIKKRNIVISPYTYGTAVKGMCSSGDLDGAYNIVKEMGASG-CRPNVVIYTTLIKTF 465

Query: 326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 385
           L   R  +A+ +L + M ++G +P    YN+++ GL + ++++EA+     M+  G   D
Sbjct: 466 LQKSRFGDAVRVLKE-MREQGIAPDTFCYNSLIIGLSKAKKMDEARSFLLEMVENGFKPD 524

Query: 386 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY 445
           + TY   I G  E+ +   A ++  +++    I +  +   +I   C+ GK+ EA     
Sbjct: 525 AFTYGAFISGYIEAGEFASADKYVKEMLECGVIPNKVLCTGLINEYCKKGKVIEACSAFR 584

Query: 446 ELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
            +V+ G+  +   Y V+++G  K     +A +I  EMR  G+ PD  ++  L       G
Sbjct: 585 SMVEQGILGDAKTYTVLMNGLVKNGKVNDAEEIFHEMRGKGIAPDVFSYGTLIDGFSKLG 644

Query: 506 N 506
           N
Sbjct: 645 N 645



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 105/411 (25%), Positives = 194/411 (47%), Gaps = 18/411 (4%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +++ C   +V EA   F  M  +G + +  +YT L++G  + G+++ A ++F EMR  G+
Sbjct: 567 INEYCKKGKVIEACSAFRSMVEQGILGDAKTYTVLMNGLVKNGKVNDAEEIFHEMRGKGI 626

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+  +Y  L+ G  +  ++++A+     +++ M  +  L+ N   +  L+   CR G +
Sbjct: 627 APDVFSYGTLIDGFSKLGNMQKAS----SIFDEMV-QAGLTSNVIIYNMLLGGFCRSGEI 681

Query: 121 NEVFRIAEDMP-QGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
            +   + ++M  +G   N    C  +ID  C+SG    A ++   M+ +GL P    Y +
Sbjct: 682 EKAKELLDEMSGKGFPPNAVTYC-TIIDGYCKSGDLAEAFQLFDEMKLKGLVPDSFVYTT 740

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGL--CGESDL--EKARKVLQFM 235
           +V G C+     RA  + E   + G   S   +  L+  +   G+++L  +   +++   
Sbjct: 741 LVDGCCRLNDVERAITIFETN-EKGCASSSAPFNALINWVFKFGKTELTTDMINRLMDGS 799

Query: 236 LSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 295
             K         NI +  LC   N      +   M +    P VIT  +++NG+ KMGR 
Sbjct: 800 FDKFGKPNDVTYNIMIDYLCKEGNLEAAKELFHHMQKANLMPTVITYTSLLNGYDKMGRR 859

Query: 296 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG----I 351
            E   V ++++A     PD + ++ II   L  G   +AL LL Q+  +     G    I
Sbjct: 860 SEMFSVFDEVIAAGI-EPDNIMYSVIINAFLKEGMTTKALVLLDQMFAKNAVDDGCKLSI 918

Query: 352 VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLC-ESNQ 401
            T  A+L G  ++  +E A++V   M+ +  + DS+T   +I+  C  SNQ
Sbjct: 919 STCRALLSGFAKVGEMEVAEKVVENMVRLKYIPDSSTVIELINESCISSNQ 969



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 80/159 (50%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    +  A +LF  M+    +P V++YT+L++GY + G     + VFDE+   G+
Sbjct: 815 IDYLCKEGNLEAAKELFHHMQKANLMPTVITYTSLLNGYDKMGRRSEMFSVFDEVIAAGI 874

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+++ YSV++   L+     +A VL+ +++ +   ++   ++ +    L+    + G +
Sbjct: 875 EPDNIMYSVIINAFLKEGMTTKALVLLDQMFAKNAVDDGCKLSISTCRALLSGFAKVGEM 934

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGAS 159
               ++ E+M + K + +      +I+  C S     A+
Sbjct: 935 EVAEKVVENMVRLKYIPDSSTVIELINESCISSNQRMAA 973


>gi|297721877|ref|NP_001173302.1| Os03g0201300 [Oryza sativa Japonica Group]
 gi|108706707|gb|ABF94502.1| salt-inducible protein, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255674288|dbj|BAH92030.1| Os03g0201300 [Oryza sativa Japonica Group]
          Length = 796

 Score =  187 bits (476), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 134/478 (28%), Positives = 228/478 (47%), Gaps = 20/478 (4%)

Query: 27  PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVL 86
           PN  ++  L+H +C  G +  A      M+  G+ P+++TY+ L+    R   +  A  L
Sbjct: 206 PNHYTFNLLVHTHCSKGTLADALATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARAL 265

Query: 87  MFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDM------PQGKSVNEEF 140
           +     RMK +  ++     +  LV +  R G++ +  ++ E M      P  ++ N   
Sbjct: 266 L----ARMKRD-GIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNV-L 319

Query: 141 ACGHMIDSLCRSGRNHGASRVVYVMRKRGLT-PSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
           A G     LC++G+   A R+   M +     P +V+YN++V    K      A +LLEE
Sbjct: 320 AVG-----LCQAGKVDEAFRLKDEMERLSTALPDVVTYNTLVDACFKWRCSSDALRLLEE 374

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
               G  P+  T+ ++V+ LC E  LE+A   L+ +  +         N  + A C   N
Sbjct: 375 MRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGN 434

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
             +   ++  M+    + D  TLNTV+   CKM R E+A ++L+      F  PD V++ 
Sbjct: 435 VAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFV-PDEVSYG 493

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
           T++         + AL L  Q++ +R   P I TYN +++GL R+ R++EA +  N ++ 
Sbjct: 494 TVMAAYFKEYNPEPALRLWDQMI-ERKLIPSISTYNTLIKGLCRMERLKEAIDKLNELVE 552

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
            G+V D TTY I+I   C+   L+ A RF + +V  S   D      ++ GLC  GK+ +
Sbjct: 553 KGLVPDETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDK 612

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           A+      V+ G   +++ YN +I   CK+     A     +M   GL PDA T+ ++
Sbjct: 613 ALKLFESWVEKGKKVDVITYNTLIQSMCKVGDVDTALHFFDDMEVKGLQPDAFTYNVV 670



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 143/568 (25%), Positives = 242/568 (42%), Gaps = 85/568 (14%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C    + +A      M+  G  P+ V+Y TL++ +CR G +  A  +   M+  G+ P  
Sbjct: 219 CSKGTLADALATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKRDGIAPTQ 278

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKE---EEDLSVNNAAFANLVDSLCREGYVN 121
            TY+ LV    R   +++A     K+ E M     E DL   N     L   LC+ G V+
Sbjct: 279 PTYNTLVSAFARLGWIKQAT----KVVESMTAYGFEPDLRTYNV----LAVGLCQAGKVD 330

Query: 122 EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGR-NHGASRVVYVMRKRGLTPSLVSYNSI 180
           E FR+ ++M +  +   +    + +   C   R +  A R++  MR +G+ P+LV++N +
Sbjct: 331 EAFRLKDEMERLSTALPDVVTYNTLVDACFKWRCSSDALRLLEEMRDKGVKPTLVTHNIV 390

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           V  LCK G    A   LE+  + G  P   TY  L++  C   ++ KA  ++  M+ K  
Sbjct: 391 VKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKGL 450

Query: 241 VDRTRICNIYLRALCLIK-----------------------------------NPTELLN 265
              T   N  L  LC +K                                   NP   L 
Sbjct: 451 KMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALR 510

Query: 266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 325
           +   M++ +  P + T NT+I G C+M R++EA+  LN++V  K   PD  T+  II   
Sbjct: 511 LWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNELVE-KGLVPDETTYNIIIHAY 569

Query: 326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 385
              G ++ A    +  M +  + P +VT N ++ GL    ++++A ++F   +  G   D
Sbjct: 570 CKEGDLENAFRF-HNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWVEKGKKVD 628

Query: 386 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY 445
             TY  +I  +C+   +D A  F+DD+       D + Y  ++  L  +G+  EA + L+
Sbjct: 629 VITYNTLIQSMCKVGDVDTALHFFDDMEVKGLQPDAFTYNVVLSALSEAGRSEEAHNMLH 688

Query: 446 ELVDSG-VTPNIVC-----------------------------------YNVVIDGACKL 469
           +L DSG ++ +  C                                   Y   ++G C  
Sbjct: 689 KLADSGKLSQSFACPLLKPSSADEADVKEHEGKPEAESSEKAQDNALETYMERLNGLCTG 748

Query: 470 SMKREAYQILREMRKNGLNPDAVTWRIL 497
              +EA  +L EM + G+  D+ T+  L
Sbjct: 749 GQLKEAKAVLDEMMQKGMPVDSSTYITL 776



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 113/445 (25%), Positives = 189/445 (42%), Gaps = 63/445 (14%)

Query: 3   QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
            LC   ++ EA      +   G  P+V++Y TLI  YC+ G +  A+ + DEM   G+  
Sbjct: 393 SLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKM 452

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           ++ T                 N +++ L  +MK  ED                       
Sbjct: 453 DTFTL----------------NTVLYNLC-KMKRYEDAE--------------------- 474

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
              +    PQ   V +E + G ++ +  +      A R+   M +R L PS+ +YN+++ 
Sbjct: 475 --ELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNTLIK 532

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           GLC+      A   L E ++ G +P E TY +++   C E DLE A +    M+      
Sbjct: 533 GLCRMERLKEAIDKLNELVEKGLVPDETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKP 592

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
               CN  +  LCL     + L +    ++   + DVIT NT+I   CK+G ++ AL   
Sbjct: 593 DVVTCNTLMNGLCLHGKLDKALKLFESWVEKGKKVDVITYNTLIQSMCKVGDVDTALHFF 652

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQV-----MPQRGYSPGIVTYNA- 356
           +DM   K   PDA T+  ++  L   GR +EA N+L+++     + Q    P +   +A 
Sbjct: 653 DDMEV-KGLQPDAFTYNVVLSALSEAGRSEEAHNMLHKLADSGKLSQSFACPLLKPSSAD 711

Query: 357 -----VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDD 411
                   G       E+A++  N +          TY   ++GLC   QL EAK   D+
Sbjct: 712 EADVKEHEGKPEAESSEKAQD--NAL---------ETYMERLNGLCTGGQLKEAKAVLDE 760

Query: 412 IVWPSNIHDNYVYAAMIKGLCRSGK 436
           ++      D+  Y  +++GL +  K
Sbjct: 761 MMQKGMPVDSSTYITLMEGLIKRQK 785



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 110/481 (22%), Positives = 214/481 (44%), Gaps = 58/481 (12%)

Query: 36  IHGYCRTGEMDVAYKVFDEMRHC-GVLPNSLTYSVLVRGVLRTRD-VERANVLMFKLWER 93
           +  Y R     +A ++   +R   GV P+    + ++  + R+   + +A++ +F+    
Sbjct: 142 LSAYARLRLPHLAAQLLHSLRRRRGVRPSLQAANAVLSALSRSPSTLPQASLDVFRSLIE 201

Query: 94  MKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFAC-GHMIDSLCRS 152
           ++    L  N+  F  LV + C +G + +       M QG  ++ +      ++++ CR 
Sbjct: 202 LR----LHPNHYTFNLLVHTHCSKGTLADALATLSTM-QGFGLSPDAVTYNTLLNAHCRK 256

Query: 153 GRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTY 212
           G    A  ++  M++ G+ P+  +YN++V    + G   +A +++E    +G+ P   TY
Sbjct: 257 GMLGEARALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTY 316

Query: 213 KVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC-------NIYLRALCLIKNPTELLN 265
            VL  GLC    +++A ++      K +++R           N  + A    +  ++ L 
Sbjct: 317 NVLAVGLCQAGKVDEAFRL------KDEMERLSTALPDVVTYNTLVDACFKWRCSSDALR 370

Query: 266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 325
           +L  M     +P ++T N V+   CK G++EEAL  L + +A +  APD +T+ T+I   
Sbjct: 371 LLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKL-EKIAEEGLAPDVITYNTLIDAY 429

Query: 326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 385
              G + +A  L+ + M  +G      T N VL  L +++R E+A+E+ +     G V D
Sbjct: 430 CKAGNVAKAFTLMDE-MVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPD 488

Query: 386 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY 445
             +Y  V+    +    + A R WD                                   
Sbjct: 489 EVSYGTVMAAYFKEYNPEPALRLWD----------------------------------- 513

Query: 446 ELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
           ++++  + P+I  YN +I G C++   +EA   L E+ + GL PD  T+ I+   +   G
Sbjct: 514 QMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNELVEKGLVPDETTYNIIIHAYCKEG 573

Query: 506 N 506
           +
Sbjct: 574 D 574



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 92/219 (42%), Gaps = 39/219 (17%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M+ LC   ++ +A KLF     +G   +V++Y TLI   C+ G++D A   FD+M   G+
Sbjct: 601 MNGLCLHGKLDKALKLFESWVEKGKKVDVITYNTLIQSMCKVGDVDTALHFFDDMEVKGL 660

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P++ TY+V++  +      E A+ ++ KL +  K  +       A   L  S   E  V
Sbjct: 661 QPDAFTYNVVLSALSEAGRSEEAHNMLHKLADSGKLSQSF-----ACPLLKPSSADEADV 715

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E     E  P+ +S                               ++    +L +Y   
Sbjct: 716 KE----HEGKPEAES------------------------------SEKAQDNALETYMER 741

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGL 219
           ++GLC  G    A  +L+E +Q G      TY  L+EGL
Sbjct: 742 LNGLCTGGQLKEAKAVLDEMMQKGMPVDSSTYITLMEGL 780


>gi|449515696|ref|XP_004164884.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Cucumis sativus]
          Length = 657

 Score =  187 bits (476), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 141/522 (27%), Positives = 238/522 (45%), Gaps = 41/522 (7%)

Query: 10  VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSV 69
           V EA +L  DM + G   N+   T+L+ GYC  G +  A  + +E+   G++PN +TYSV
Sbjct: 126 VAEALRLKDDMVNCGKSMNLAVATSLMKGYCMQGNLRSALVLVNEISESGLVPNKVTYSV 185

Query: 70  LVRGVLRTRDVERANVLMFKLWERMKEE-------------------------------- 97
           L+ G  +  ++E+A    F+ +  MK +                                
Sbjct: 186 LIDGCCKNGNIEKA----FEFYSEMKTKGIRSSVYSLNSILEGYLKCQSWQNAFTMFNDA 241

Query: 98  -EDLSVNNAAFANLVDSLCREGYVNEVFRIAED-MPQGKSVNEEFACGHMIDSLCRSGRN 155
            E    N   F  L+  LC+EG +NE   + ++ + +G S N   +  ++I   CR    
Sbjct: 242 LESGLANVFTFNTLLSWLCKEGKMNEACNLWDEVIAKGISPNV-VSYNNIILGHCRKDNI 300

Query: 156 HGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVL 215
           + A +V   M   G TP+ V++  ++ G  K G    A+ +         LP++ T  ++
Sbjct: 301 NAACKVYKEMLDNGFTPNAVTFTILMDGYFKKGDIENAFSIFHRMKDANILPTDTTLGII 360

Query: 216 VEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQC 275
           ++GLC      + R +    +S+  V      N  +       N     NV   M +   
Sbjct: 361 IKGLCKAGRSFEGRDLFNKFVSQGFVPTCMPYNTIIDGFIKEGNINLASNVYREMCEVGI 420

Query: 276 QPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEAL 335
            P  +T  ++I+GFCK   I+ ALK+LNDM   K    D   + T+I G      ++ A 
Sbjct: 421 TPSTVTYTSLIDGFCKGNNIDLALKLLNDM-KRKGLKMDIKAYGTLIDGFCKRRDMKSAH 479

Query: 336 NLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG 395
            LL + +   G SP    YN+++ G   +  VEEA +++  M+  G+  D  TY  +IDG
Sbjct: 480 ELLNE-LRGAGLSPNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYTSLIDG 538

Query: 396 LCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN 455
           L +S +L  A     +++    + D+  +  +I GLC  G+   A   L ++    + P+
Sbjct: 539 LLKSGRLLYASDIHTEMLSKGILPDDRAHTVLINGLCNKGQFENARKILEDMNGKNMIPS 598

Query: 456 IVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           ++ YN +I G  K    +EA+++  EM   GL PD +T+ IL
Sbjct: 599 VLIYNTLIAGHFKEGNLQEAFRLHDEMLDRGLVPDNITYDIL 640



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 118/491 (24%), Positives = 212/491 (43%), Gaps = 18/491 (3%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           EA + F   K+RG   +  +Y+  +H  C       A  +  EMR  G +P   T++ ++
Sbjct: 58  EAEQHFLQAKARGVELDQEAYSIFVHLLCLKPNSGYALSLLREMRAAGWIPPEGTFTSVI 117

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDL-----SVNNAAFANLVDSLCREGYVNEVFRI 126
              ++  +V  A          ++ ++D+     S+N A   +L+   C +G +     +
Sbjct: 118 TACVKEGNVAEA----------LRLKDDMVNCGKSMNLAVATSLMKGYCMQGNLRSALVL 167

Query: 127 AEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK 186
             ++ +   V  +     +ID  C++G    A      M+ +G+  S+ S NSI+ G  K
Sbjct: 168 VNEISESGLVPNKVTYSVLIDGCCKNGNIEKAFEFYSEMKTKGIRSSVYSLNSILEGYLK 227

Query: 187 HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRI 246
                 A+ +  + ++ G L +  T+  L+  LC E  + +A  +   +++K        
Sbjct: 228 CQSWQNAFTMFNDALESG-LANVFTFNTLLSWLCKEGKMNEACNLWDEVIAKGISPNVVS 286

Query: 247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV 306
            N  +   C   N      V   ML     P+ +T   +++G+ K G IE A  + + M 
Sbjct: 287 YNNIILGHCRKDNINAACKVYKEMLDNGFTPNAVTFTILMDGYFKKGDIENAFSIFHRMK 346

Query: 307 AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 366
                 P   T   II GL   GR  E  +L  + + Q G+ P  + YN ++ G  +   
Sbjct: 347 DANI-LPTDTTLGIIIKGLCKAGRSFEGRDLFNKFVSQ-GFVPTCMPYNTIIDGFIKEGN 404

Query: 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAA 426
           +  A  V+  M  +G+   + TY  +IDG C+ N +D A +  +D+       D   Y  
Sbjct: 405 INLASNVYREMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGT 464

Query: 427 MIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG 486
           +I G C+   +  A   L EL  +G++PN   YN +I G   ++   EA  + ++M   G
Sbjct: 465 LIDGFCKRRDMKSAHELLNELRGAGLSPNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEG 524

Query: 487 LNPDAVTWRIL 497
           +  D  T+  L
Sbjct: 525 IPCDLKTYTSL 535



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 113/472 (23%), Positives = 211/472 (44%), Gaps = 8/472 (1%)

Query: 26  VPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANV 85
            P++     L+    R      A ++ ++M   GV  +  T  V++R  L+  ++  A  
Sbjct: 2   TPSIQCMNILLTAMVRKNMTCEARELHNKMLLVGVTGDCFTLHVMLRACLKEGNILEAEQ 61

Query: 86  LMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHM 145
              +   R  E     ++  A++  V  LC +        +  +M     +  E     +
Sbjct: 62  HFLQAKARGVE-----LDQEAYSIFVHLLCLKPNSGYALSLLREMRAAGWIPPEGTFTSV 116

Query: 146 IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY 205
           I +  + G    A R+   M   G + +L    S++ G C  G    A  L+ E  + G 
Sbjct: 117 ITACVKEGNVAEALRLKDDMVNCGKSMNLAVATSLMKGYCMQGNLRSALVLVNEISESGL 176

Query: 206 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 265
           +P++ TY VL++G C   ++EKA +    M +K         N  L      ++      
Sbjct: 177 VPNKVTYSVLIDGCCKNGNIEKAFEFYSEMKTKGIRSSVYSLNSILEGYLKCQSWQNAFT 236

Query: 266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 325
           +    L++    +V T NT+++  CK G++ EA  + ++++A K  +P+ V++  II G 
Sbjct: 237 MFNDALESGL-ANVFTFNTLLSWLCKEGKMNEACNLWDEVIA-KGISPNVVSYNNIILGH 294

Query: 326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 385
                I  A   +Y+ M   G++P  VT+  ++ G F+   +E A  +F+ M    ++  
Sbjct: 295 CRKDNINAACK-VYKEMLDNGFTPNAVTFTILMDGYFKKGDIENAFSIFHRMKDANILPT 353

Query: 386 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY 445
            TT  I+I GLC++ +  E +  ++  V    +     Y  +I G  + G I+ A +   
Sbjct: 354 DTTLGIIIKGLCKAGRSFEGRDLFNKFVSQGFVPTCMPYNTIIDGFIKEGNINLASNVYR 413

Query: 446 ELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           E+ + G+TP+ V Y  +IDG CK +    A ++L +M++ GL  D   +  L
Sbjct: 414 EMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTL 465



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 81/335 (24%), Positives = 148/335 (44%), Gaps = 40/335 (11%)

Query: 166 RKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDL 225
           + RG+     +Y+  VH LC       A  LL E    G++P E T+  ++     E ++
Sbjct: 67  KARGVELDQEAYSIFVHLLCLKPNSGYALSLLREMRAAGWIPPEGTFTSVITACVKEGNV 126

Query: 226 EKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTV 285
            +A ++   M+                      N  + +N+ V               ++
Sbjct: 127 AEALRLKDDMV----------------------NCGKSMNLAV-------------ATSL 151

Query: 286 INGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQR 345
           + G+C  G +  AL ++N++       P+ VT++ +I G    G I++A    Y  M  +
Sbjct: 152 MKGYCMQGNLRSALVLVNEISESGL-VPNKVTYSVLIDGCCKNGNIEKAFEF-YSEMKTK 209

Query: 346 GYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA 405
           G    + + N++L G  + +  + A  +FN  L  G+ A+  T+  ++  LC+  +++EA
Sbjct: 210 GIRSSVYSLNSILEGYLKCQSWQNAFTMFNDALESGL-ANVFTFNTLLSWLCKEGKMNEA 268

Query: 406 KRFWDDIVWPSNIHDNYV-YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
              WD+++    I  N V Y  +I G CR   I+ A     E++D+G TPN V + +++D
Sbjct: 269 CNLWDEVI-AKGISPNVVSYNNIILGHCRKDNINAACKVYKEMLDNGFTPNAVTFTILMD 327

Query: 465 GACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
           G  K      A+ I   M+   + P   T  I+ K
Sbjct: 328 GYFKKGDIENAFSIFHRMKDANILPTDTTLGIIIK 362



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 93/223 (41%), Gaps = 38/223 (17%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C  + +  A KL  DMK +G   ++ +Y TLI G+C+  +M  A+++ +E+R  G+
Sbjct: 431 IDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGAGL 490

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEE---DLSV--------------- 102
            PN   Y+ ++ G     +VE A      L+++M  E    DL                 
Sbjct: 491 SPNRFIYNSMITGFKNMNNVEEA----IDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLL 546

Query: 103 ----------------NNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMI 146
                           ++ A   L++ LC +G      +I EDM     +        +I
Sbjct: 547 YASDIHTEMLSKGILPDDRAHTVLINGLCNKGQFENARKILEDMNGKNMIPSVLIYNTLI 606

Query: 147 DSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG 189
               + G    A R+   M  RGL P  ++Y+ +V+G  K  G
Sbjct: 607 AGHFKEGNLQEAFRLHDEMLDRGLVPDNITYDILVNGKFKGDG 649


>gi|22128589|gb|AAM52340.1| fertility restorer-like protein [Petunia x hybrida]
          Length = 591

 Score =  187 bits (476), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 126/507 (24%), Positives = 233/507 (45%), Gaps = 57/507 (11%)

Query: 7   LSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGY----------------CRTGEMDVAYK 50
           L  V    KL   M    H  +VVS    IH                  C     D+ + 
Sbjct: 69  LPSVASFSKLLKAMVHMKHYSSVVSLFREIHKLRIPVHEFILSIVVNSCCLMHRTDLGFS 128

Query: 51  VFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANL 110
           V       G+  N +T++ L+RG+     V+ A      L++++  E     N   +  +
Sbjct: 129 VLAIHFKKGIPYNEVTFTTLIRGLFAENKVKDA----VHLFKKLVRENICEPNEVMYGTV 184

Query: 111 VDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGL 170
           ++ LC++G+  + F +   M QG +         +ID+ C+ G   GA+ ++  M+++ +
Sbjct: 185 MNGLCKKGHTQKAFDLLRLMEQGSTKPNTRTYTIVIDAFCKDGMLDGATSLLNEMKQKSI 244

Query: 171 TPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARK 230
            P + +Y++++  LCK         L  E I     P+  T+  +++GLC E  +E A +
Sbjct: 245 PPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNIYPNVCTFNSVIDGLCKEGKVEDAEE 304

Query: 231 VLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFC 290
           ++++M+ +K VD                                  PDVIT N +I+G+ 
Sbjct: 305 IMRYMI-EKGVD----------------------------------PDVITYNMIIDGYG 329

Query: 291 KMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG 350
             G+++ A ++ + M+  K   PD +++  +I G     +I EA+ +  ++  Q+G  P 
Sbjct: 330 LRGQVDRAREIFDSMI-NKSIEPDIISYNILINGYARQKKIDEAMQVCREI-SQKGLKPS 387

Query: 351 IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD 410
           IVT N +L GLF L R + A+  F+ ML  G + D  T+  ++ G  ++  ++EA   + 
Sbjct: 388 IVTCNVLLHGLFELGRTKSAQNFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFH 447

Query: 411 DIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLS 470
            +       +  +Y A+I GLC++GK+ +A     +L   G+ P+++ Y  +I G C+  
Sbjct: 448 KLERRREDTNIQIYTAVIDGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEG 507

Query: 471 MKREAYQILREMRKNGLNPDAVTWRIL 497
           +  EA  +LR+M  NG   D  T+ ++
Sbjct: 508 LLDEAKDMLRKMEDNGCLADNRTYNVI 534



 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 111/452 (24%), Positives = 218/452 (48%), Gaps = 10/452 (2%)

Query: 45  MDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNN 104
           +D A+ +F +M     LP+  ++S L++ ++  +      V +F+   +++    + V+ 
Sbjct: 53  LDDAFSLFRQMVRTKPLPSVASFSKLLKAMVHMKHYSSV-VSLFREIHKLR----IPVHE 107

Query: 105 AAFANLVDSLCREGYVNEVFRI-AEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVY 163
              + +V+S C     +  F + A    +G   NE      +I  L    +   A  +  
Sbjct: 108 FILSIVVNSCCLMHRTDLGFSVLAIHFKKGIPYNE-VTFTTLIRGLFAENKVKDAVHLFK 166

Query: 164 -VMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGE 222
            ++R+    P+ V Y ++++GLCK G   +A+ LL    Q    P+  TY ++++  C +
Sbjct: 167 KLVRENICEPNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQGSTKPNTRTYTIVIDAFCKD 226

Query: 223 SDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITL 282
             L+ A  +L  M  K         +  + ALC +     +  + + M+     P+V T 
Sbjct: 227 GMLDGATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNIYPNVCTF 286

Query: 283 NTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVM 342
           N+VI+G CK G++E+A +++  M+  K   PD +T+  II G    G++  A  + +  M
Sbjct: 287 NSVIDGLCKEGKVEDAEEIMRYMIE-KGVDPDVITYNMIIDGYGLRGQVDRAREI-FDSM 344

Query: 343 PQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQL 402
             +   P I++YN ++ G  R ++++EA +V   +   G+     T  +++ GL E  + 
Sbjct: 345 INKSIEPDIISYNILINGYARQKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLFELGRT 404

Query: 403 DEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVV 462
             A+ F+D+++   +I D Y +  ++ G  ++G + EA+   ++L       NI  Y  V
Sbjct: 405 KSAQNFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAV 464

Query: 463 IDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
           IDG CK     +A+    ++   GL+PD +T+
Sbjct: 465 IDGLCKNGKLDKAHATFEKLPLIGLHPDVITY 496



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 93/390 (23%), Positives = 186/390 (47%), Gaps = 7/390 (1%)

Query: 27  PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVL 86
           PN V Y T+++G C+ G    A+ +   M      PN+ TY++++    +   ++ A  L
Sbjct: 176 PNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQGSTKPNTRTYTIVIDAFCKDGMLDGATSL 235

Query: 87  MFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMI 146
           + ++     +++ +  +   ++ L+D+LC+      V  +  +M              +I
Sbjct: 236 LNEM-----KQKSIPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNIYPNVCTFNSVI 290

Query: 147 DSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL 206
           D LC+ G+   A  ++  M ++G+ P +++YN I+ G    G   RA ++ +  I     
Sbjct: 291 DGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSMINKSIE 350

Query: 207 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 266
           P   +Y +L+ G   +  +++A +V + +  K        CN+ L  L  +       N 
Sbjct: 351 PDIISYNILINGYARQKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLFELGRTKSAQNF 410

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
              ML     PD+ T  T++ G+ K G +EEA+   + +   +    +   +T +I GL 
Sbjct: 411 FDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRRE-DTNIQIYTAVIDGLC 469

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
             G++ +A +  ++ +P  G  P ++TY A++ G  +   ++EAK++   M   G +AD+
Sbjct: 470 KNGKLDKA-HATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLADN 528

Query: 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416
            TY +++ G   SN++ E K F ++I   S
Sbjct: 529 RTYNVIVRGFLRSNKVSEMKAFLEEIAGKS 558



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/246 (28%), Positives = 124/246 (50%), Gaps = 6/246 (2%)

Query: 257 IKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAV 316
           +K+   L   LV   +  C+P+ +   TV+NG CK G  ++A  +L  M  G    P+  
Sbjct: 158 VKDAVHLFKKLV--RENICEPNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQGS-TKPNTR 214

Query: 317 TFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNC 376
           T+T +I      G +  A +LL + M Q+   P I TY+ ++  L +L + E  + +F  
Sbjct: 215 TYTIVIDAFCKDGMLDGATSLLNE-MKQKSIPPDIFTYSTLIDALCKLSQWENVRTLFLE 273

Query: 377 MLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGK 436
           M+ + +  +  T+  VIDGLC+  ++++A+     ++      D   Y  +I G    G+
Sbjct: 274 MIHLNIYPNVCTFNSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQ 333

Query: 437 IHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRI 496
           +  A      +++  + P+I+ YN++I+G  +     EA Q+ RE+ + GL P  VT  +
Sbjct: 334 VDRAREIFDSMINKSIEPDIISYNILINGYARQKKIDEAMQVCREISQKGLKPSIVTCNV 393

Query: 497 LDKLHG 502
           L  LHG
Sbjct: 394 L--LHG 397



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 78/307 (25%), Positives = 149/307 (48%), Gaps = 10/307 (3%)

Query: 208 SEHTYKVLVEGLCGESD-------LEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNP 260
           S +T  + V+G  G S+       L+ A  + + M+  K +      +  L+A+  +K+ 
Sbjct: 29  STNTCSISVKGNFGVSNEFQNVKCLDDAFSLFRQMVRTKPLPSVASFSKLLKAMVHMKHY 88

Query: 261 TELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAP-DAVTFT 319
           + ++++   + + +       L+ V+N  C M R +    VL   +  K   P + VTFT
Sbjct: 89  SSVVSLFREIHKLRIPVHEFILSIVVNSCCLMHRTDLGFSVL--AIHFKKGIPYNEVTFT 146

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
           T+I GL    ++++A++L  +++ +    P  V Y  V+ GL +    ++A ++   M  
Sbjct: 147 TLIRGLFAENKVKDAVHLFKKLVRENICEPNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQ 206

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
                ++ TY IVID  C+   LD A    +++   S   D + Y+ +I  LC+  +   
Sbjct: 207 GSTKPNTRTYTIVIDAFCKDGMLDGATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWEN 266

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
                 E++   + PN+  +N VIDG CK     +A +I+R M + G++PD +T+ ++  
Sbjct: 267 VRTLFLEMIHLNIYPNVCTFNSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIID 326

Query: 500 LHGNRGN 506
            +G RG 
Sbjct: 327 GYGLRGQ 333



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/341 (22%), Positives = 152/341 (44%), Gaps = 6/341 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C    +  A  L  +MK +   P++ +Y+TLI   C+  + +    +F EM H  +
Sbjct: 220 IDAFCKDGMLDGATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNI 279

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN  T++ ++ G+ +   VE A  +M  + E+  + + ++ N      ++D     G V
Sbjct: 280 YPNVCTFNSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYN-----MIIDGYGLRGQV 334

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +    I + M       +  +   +I+   R  +   A +V   + ++GL PS+V+ N +
Sbjct: 335 DRAREIFDSMINKSIEPDIISYNILINGYARQKKIDEAMQVCREISQKGLKPSIVTCNVL 394

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +HGL + G    A    +E +  G++P  +T+  L+ G      +E+A      +  +++
Sbjct: 395 LHGLFELGRTKSAQNFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRRE 454

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
               +I    +  LC      +       +      PDVIT   +I+G+C+ G ++EA  
Sbjct: 455 DTNIQIYTAVIDGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKD 514

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQV 341
           +L  M     C  D  T+  I+ G L   ++ E    L ++
Sbjct: 515 MLRKM-EDNGCLADNRTYNVIVRGFLRSNKVSEMKAFLEEI 554


>gi|240254191|ref|NP_174467.4| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
 gi|357528959|sp|Q9C6S6.2|PPR67_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g31840
 gi|332193282|gb|AEE31403.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 840

 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 139/509 (27%), Positives = 233/509 (45%), Gaps = 42/509 (8%)

Query: 24  GHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERA 83
           G  PNVV++ TLI+G+C+ GEMD A+ +F  M   G+ P+ + YS L+ G  +   +   
Sbjct: 281 GPAPNVVTFCTLINGFCKRGEMDRAFDLFKVMEQRGIEPDLIAYSTLIDGYFKAGMLGMG 340

Query: 84  NVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP-QGKSVNEEFAC 142
           + L  +   +      + ++   F++ +D   + G +     + + M  QG S N     
Sbjct: 341 HKLFSQALHK-----GVKLDVVVFSSTIDVYVKSGDLATASVVYKRMLCQGISPN-VVTY 394

Query: 143 GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQ 202
             +I  LC+ GR + A  +   + KRG+ PS+V+Y+S++ G CK G     + L E+ I+
Sbjct: 395 TILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLIDGFCKCGNLRSGFALYEDMIK 454

Query: 203 FGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTE 262
            GY P    Y VLV+GL  +  +  A +    ML +       + N  +   C +    E
Sbjct: 455 MGYPPDVVIYGVLVDGLSKQGLMLHAMRFSVKMLGQSIRLNVVVFNSLIDGWCRLNRFDE 514

Query: 263 LLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTII 322
            L V   M     +PDV T  TV+      GR+EEAL +   M       PDA+ + T+I
Sbjct: 515 ALKVFRLMGIYGIKPDVATFTTVMRVSIMEGRLEEALFLFFRMFKMGL-EPDALAYCTLI 573

Query: 323 ---------------FGLLNVGRIQE-------ALNLLYQV------------MPQRGYS 348
                          F L+   +I          ++LL++             + +    
Sbjct: 574 DAFCKHMKPTIGLQLFDLMQRNKISADIAVCNVVIHLLFKCHRIEDASKFFNNLIEGKME 633

Query: 349 PGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRF 408
           P IVTYN ++ G   LRR++EA+ +F  +       ++ T  I+I  LC++N +D A R 
Sbjct: 634 PDIVTYNTMICGYCSLRRLDEAERIFELLKVTPFGPNTVTLTILIHVLCKNNDMDGAIRM 693

Query: 409 WDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACK 468
           +  +    +  +   Y  ++    +S  I  +     E+ + G++P+IV Y+++IDG CK
Sbjct: 694 FSIMAEKGSKPNAVTYGCLMDWFSKSVDIEGSFKLFEEMQEKGISPSIVSYSIIIDGLCK 753

Query: 469 LSMKREAYQILREMRKNGLNPDAVTWRIL 497
                EA  I  +     L PD V + IL
Sbjct: 754 RGRVDEATNIFHQAIDAKLLPDVVAYAIL 782



 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 110/440 (25%), Positives = 211/440 (47%), Gaps = 15/440 (3%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M  +G  PNVV+YT LI G C+ G +  A+ ++ ++   G+ P+ +TYS L+ G  +  +
Sbjct: 382 MLCQGISPNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLIDGFCKCGN 441

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
           + R+   +++   +M    D+ +    +  LVD L ++G +    R +  M  G+S+   
Sbjct: 442 L-RSGFALYEDMIKMGYPPDVVI----YGVLVDGLSKQGLMLHAMRFSVKM-LGQSIRLN 495

Query: 140 FAC-GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLE 198
                 +ID  CR  R   A +V  +M   G+ P + ++ +++      G    A  L  
Sbjct: 496 VVVFNSLIDGWCRLNRFDEALKVFRLMGIYGIKPDVATFTTVMRVSIMEGRLEEALFLFF 555

Query: 199 EGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCL-- 256
              + G  P    Y  L++  C         ++   M   K      +CN+ +  L    
Sbjct: 556 RMFKMGLEPDALAYCTLIDAFCKHMKPTIGLQLFDLMQRNKISADIAVCNVVIHLLFKCH 615

Query: 257 -IKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA 315
            I++ ++  N L+   + + +PD++T NT+I G+C + R++EA ++   +    F  P+ 
Sbjct: 616 RIEDASKFFNNLI---EGKMEPDIVTYNTMICGYCSLRRLDEAERIFELLKVTPF-GPNT 671

Query: 316 VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN 375
           VT T +I  L     +  A+ + + +M ++G  P  VTY  ++    +   +E + ++F 
Sbjct: 672 VTLTILIHVLCKNNDMDGAIRM-FSIMAEKGSKPNAVTYGCLMDWFSKSVDIEGSFKLFE 730

Query: 376 CMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG 435
            M   G+     +Y+I+IDGLC+  ++DEA   +   +    + D   YA +I+G C+ G
Sbjct: 731 EMQEKGISPSIVSYSIIIDGLCKRGRVDEATNIFHQAIDAKLLPDVVAYAILIRGYCKVG 790

Query: 436 KIHEAVHFLYELVDSGVTPN 455
           ++ EA      ++ +GV P+
Sbjct: 791 RLVEAALLYEHMLRNGVKPD 810



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 118/469 (25%), Positives = 206/469 (43%), Gaps = 40/469 (8%)

Query: 31  SYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKL 90
           S+ T+ H   R G  DVA KVFDEM    +      ++VL  G +R R ++ A+V  F  
Sbjct: 101 SFYTIAHVLIRNGMFDVADKVFDEM----ITNRGKDFNVL--GSIRDRSLD-ADVCKF-- 151

Query: 91  WERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC 150
                              L++  CR G V++   I     Q   V  + +   M++SL 
Sbjct: 152 -------------------LMECCCRYGMVDKALEIFVYSTQLGVVIPQDSVYRMLNSLI 192

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIV-HGLCKHGGCMRAYQL----LEEGIQFGY 205
            S R    +     + + G+ PS VS +  V   L   G   +A       +E G + G 
Sbjct: 193 GSDRVDLIADHFDKLCRGGIEPSGVSAHGFVLDALFCKGEVTKALDFHRLVMERGFRVGI 252

Query: 206 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 265
           +      K L         +E A ++L  +L              +   C         +
Sbjct: 253 VSCNKVLKGL-----SVDQIEVASRLLSLVLDCGPAPNVVTFCTLINGFCKRGEMDRAFD 307

Query: 266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 325
           +   M Q   +PD+I  +T+I+G+ K G +    K+ +  +  K    D V F++ I   
Sbjct: 308 LFKVMEQRGIEPDLIAYSTLIDGYFKAGMLGMGHKLFSQALH-KGVKLDVVVFSSTIDVY 366

Query: 326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 385
           +  G +  A +++Y+ M  +G SP +VTY  +++GL +  R+ EA  ++  +L  G+   
Sbjct: 367 VKSGDLATA-SVVYKRMLCQGISPNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPS 425

Query: 386 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY 445
             TY+ +IDG C+   L      ++D++      D  +Y  ++ GL + G +  A+ F  
Sbjct: 426 IVTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGLSKQGLMLHAMRFSV 485

Query: 446 ELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
           +++   +  N+V +N +IDG C+L+   EA ++ R M   G+ PD  T+
Sbjct: 486 KMLGQSIRLNVVVFNSLIDGWCRLNRFDEALKVFRLMGIYGIKPDVATF 534



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 74/301 (24%), Positives = 135/301 (44%), Gaps = 11/301 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C L+R  EA K+F  M   G  P+V ++TT++      G ++ A  +F  M   G+
Sbjct: 503 IDGWCRLNRFDEALKVFRLMGIYGIKPDVATFTTVMRVSIMEGRLEEALFLFFRMFKMGL 562

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P++L Y  L+    +        + +F L +R K   D++V N     ++  L +   +
Sbjct: 563 EPDALAYCTLIDAFCKHMK-PTIGLQLFDLMQRNKISADIAVCNV----VIHLLFKCHRI 617

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +  +   ++ +GK   +      MI   C   R   A R+  +++     P+ V+   +
Sbjct: 618 EDASKFFNNLIEGKMEPDIVTYNTMICGYCSLRRLDEAERIFELLKVTPFGPNTVTLTIL 677

Query: 181 VHGLCKHG---GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
           +H LCK+    G +R + ++ E    G  P+  TY  L++      D+E + K+ + M  
Sbjct: 678 IHVLCKNNDMDGAIRMFSIMAEK---GSKPNAVTYGCLMDWFSKSVDIEGSFKLFEEMQE 734

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
           K         +I +  LC      E  N+    +  +  PDV+    +I G+CK+GR+ E
Sbjct: 735 KGISPSIVSYSIIIDGLCKRGRVDEATNIFHQAIDAKLLPDVVAYAILIRGYCKVGRLVE 794

Query: 298 A 298
           A
Sbjct: 795 A 795



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 78/336 (23%), Positives = 148/336 (44%), Gaps = 45/336 (13%)

Query: 165 MRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY-LPSEHTYKVLVEGLCGES 223
           +R R L   +  +  ++   C++G   +A ++     Q G  +P +  Y++L   L G  
Sbjct: 139 IRDRSLDADVCKF--LMECCCRYGMVDKALEIFVYSTQLGVVIPQDSVYRML-NSLIGSD 195

Query: 224 DLEKARKVLQFMLSKKDVDRTRIC--NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVIT 281
            ++         L +  ++ + +      L AL      T+ L+    +++   +  +++
Sbjct: 196 RVDLIADHFD-KLCRGGIEPSGVSAHGFVLDALFCKGEVTKALDFHRLVMERGFRVGIVS 254

Query: 282 LNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQV 341
            N V+ G   + +IE A ++L+ +V     AP+ VTF T+I G    G +  A +L ++V
Sbjct: 255 CNKVLKGL-SVDQIEVASRLLS-LVLDCGPAPNVVTFCTLINGFCKRGEMDRAFDL-FKV 311

Query: 342 MPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ 401
           M QRG  P ++ Y+ ++ G F+   +    ++F+  L  GV  D   ++  ID   +S  
Sbjct: 312 MEQRGIEPDLIAYSTLIDGYFKAGMLGMGHKLFSQALHKGVKLDVVVFSSTIDVYVKSGD 371

Query: 402 LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNV 461
           L  A               + VY  M   LC+                 G++PN+V Y +
Sbjct: 372 LATA---------------SVVYKRM---LCQ-----------------GISPNVVTYTI 396

Query: 462 VIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           +I G C+     EA+ +  ++ K G+ P  VT+  L
Sbjct: 397 LIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSL 432



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 68/127 (53%), Gaps = 5/127 (3%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC  + +  A ++F  M  +G  PN V+Y  L+  + ++ +++ ++K+F+EM+  G+ P+
Sbjct: 681 LCKNNDMDGAIRMFSIMAEKGSKPNAVTYGCLMDWFSKSVDIEGSFKLFEEMQEKGISPS 740

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            ++YS+++ G+ +   V+ A  +  +       +  L  +  A+A L+   C+ G + E 
Sbjct: 741 IVSYSIIIDGLCKRGRVDEATNIFHQAI-----DAKLLPDVVAYAILIRGYCKVGRLVEA 795

Query: 124 FRIAEDM 130
             + E M
Sbjct: 796 ALLYEHM 802



 Score = 47.8 bits (112), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 36/70 (51%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   RV EA  +F        +P+VV+Y  LI GYC+ G +  A  +++ M   GV
Sbjct: 748 IDGLCKRGRVDEATNIFHQAIDAKLLPDVVAYAILIRGYCKVGRLVEAALLYEHMLRNGV 807

Query: 61  LPNSLTYSVL 70
            P+ L    L
Sbjct: 808 KPDDLLQRAL 817


>gi|449461475|ref|XP_004148467.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Cucumis sativus]
          Length = 775

 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 141/522 (27%), Positives = 238/522 (45%), Gaps = 41/522 (7%)

Query: 10  VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSV 69
           V EA +L  DM + G   N+   T+L+ GYC  G +  A  + +E+   G++PN +TYSV
Sbjct: 244 VAEALRLKDDMVNCGKSMNLAVATSLMKGYCMQGNLRSALVLVNEISESGLVPNKVTYSV 303

Query: 70  LVRGVLRTRDVERANVLMFKLWERMKEE-------------------------------- 97
           L+ G  +  ++E+A    F+ +  MK +                                
Sbjct: 304 LIDGCCKNGNIEKA----FEFYSEMKTKGIRSSVYSLNSILEGYLKCQSWQNAFTMFNDA 359

Query: 98  -EDLSVNNAAFANLVDSLCREGYVNEVFRIAED-MPQGKSVNEEFACGHMIDSLCRSGRN 155
            E    N   F  L+  LC+EG +NE   + ++ + +G S N   +  ++I   CR    
Sbjct: 360 LESGLANVFTFNTLLSWLCKEGKMNEACNLWDEVIAKGISPNV-VSYNNIILGHCRKDNI 418

Query: 156 HGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVL 215
           + A +V   M   G TP+ V++  ++ G  K G    A+ +         LP++ T  ++
Sbjct: 419 NAACKVYKEMLDNGFTPNAVTFTILMDGYFKKGDIENAFSIFHRMKDANILPTDTTLGII 478

Query: 216 VEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQC 275
           ++GLC      + R +    +S+  V      N  +       N     NV   M +   
Sbjct: 479 IKGLCKAGRSFEGRDLFNKFVSQGFVPTCMPYNTIIDGFIKEGNINLASNVYREMCEVGI 538

Query: 276 QPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEAL 335
            P  +T  ++I+GFCK   I+ ALK+LNDM   K    D   + T+I G      ++ A 
Sbjct: 539 TPSTVTYTSLIDGFCKGNNIDLALKLLNDM-KRKGLKMDIKAYGTLIDGFCKRRDMKSAH 597

Query: 336 NLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG 395
            LL + +   G SP    YN+++ G   +  VEEA +++  M+  G+  D  TY  +IDG
Sbjct: 598 ELLNE-LRGAGLSPNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYTSLIDG 656

Query: 396 LCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN 455
           L +S +L  A     +++    + D+  +  +I GLC  G+   A   L ++    + P+
Sbjct: 657 LLKSGRLLYASDIHTEMLSKGILPDDRAHTVLINGLCNKGQFENARKILEDMNGKNMIPS 716

Query: 456 IVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           ++ YN +I G  K    +EA+++  EM   GL PD +T+ IL
Sbjct: 717 VLIYNTLIAGHFKEGNLQEAFRLHDEMLDRGLVPDNITYDIL 758



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 118/491 (24%), Positives = 212/491 (43%), Gaps = 18/491 (3%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           EA + F   K+RG   +  +Y+  +H  C       A  +  EMR  G +P   T++ ++
Sbjct: 176 EAEQHFLQAKARGVELDQEAYSIFVHLLCLKPNSGYALSLLREMRAAGWIPPEGTFTSVI 235

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDL-----SVNNAAFANLVDSLCREGYVNEVFRI 126
              ++  +V  A          ++ ++D+     S+N A   +L+   C +G +     +
Sbjct: 236 TACVKEGNVAEA----------LRLKDDMVNCGKSMNLAVATSLMKGYCMQGNLRSALVL 285

Query: 127 AEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK 186
             ++ +   V  +     +ID  C++G    A      M+ +G+  S+ S NSI+ G  K
Sbjct: 286 VNEISESGLVPNKVTYSVLIDGCCKNGNIEKAFEFYSEMKTKGIRSSVYSLNSILEGYLK 345

Query: 187 HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRI 246
                 A+ +  + ++ G L +  T+  L+  LC E  + +A  +   +++K        
Sbjct: 346 CQSWQNAFTMFNDALESG-LANVFTFNTLLSWLCKEGKMNEACNLWDEVIAKGISPNVVS 404

Query: 247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV 306
            N  +   C   N      V   ML     P+ +T   +++G+ K G IE A  + + M 
Sbjct: 405 YNNIILGHCRKDNINAACKVYKEMLDNGFTPNAVTFTILMDGYFKKGDIENAFSIFHRMK 464

Query: 307 AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 366
                 P   T   II GL   GR  E  +L  + + Q G+ P  + YN ++ G  +   
Sbjct: 465 DANIL-PTDTTLGIIIKGLCKAGRSFEGRDLFNKFVSQ-GFVPTCMPYNTIIDGFIKEGN 522

Query: 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAA 426
           +  A  V+  M  +G+   + TY  +IDG C+ N +D A +  +D+       D   Y  
Sbjct: 523 INLASNVYREMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGT 582

Query: 427 MIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG 486
           +I G C+   +  A   L EL  +G++PN   YN +I G   ++   EA  + ++M   G
Sbjct: 583 LIDGFCKRRDMKSAHELLNELRGAGLSPNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEG 642

Query: 487 LNPDAVTWRIL 497
           +  D  T+  L
Sbjct: 643 IPCDLKTYTSL 653



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 106/453 (23%), Positives = 193/453 (42%), Gaps = 61/453 (13%)

Query: 61  LPNSLTYSVLVRGVL-RTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGY 119
           L ++LT S ++  +L R  D   A     K +ER+K++ + +    A   L+  L     
Sbjct: 75  LNSALTESHVINTLLNRKSDPTSA----LKYFERIKKKIEFAKCTDAVCILLLILTNSAE 130

Query: 120 VNEVFRIAEDMPQGKSVNEEFACGHMIDSLC------------RSGRNHGASRVVYVMRK 167
            +    + +    GKSV   F+C  ++D L             + G    A +     + 
Sbjct: 131 THRAQYLFDQFASGKSV--RFSC--LMDRLVECTKLYNFPLDIQEGNILEAEQHFLQAKA 186

Query: 168 RGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEK 227
           RG+     +Y+  VH LC       A  LL E    G++P E T+  ++     E ++ +
Sbjct: 187 RGVELDQEAYSIFVHLLCLKPNSGYALSLLREMRAAGWIPPEGTFTSVITACVKEGNVAE 246

Query: 228 ARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVIN 287
           A ++   M+                      N  + +N+ V               +++ 
Sbjct: 247 ALRLKDDMV----------------------NCGKSMNLAV-------------ATSLMK 271

Query: 288 GFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGY 347
           G+C  G +  AL ++N++       P+ VT++ +I G    G I++A    Y  M  +G 
Sbjct: 272 GYCMQGNLRSALVLVNEISESGL-VPNKVTYSVLIDGCCKNGNIEKAFEF-YSEMKTKGI 329

Query: 348 SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKR 407
              + + N++L G  + +  + A  +FN  L  G+ A+  T+  ++  LC+  +++EA  
Sbjct: 330 RSSVYSLNSILEGYLKCQSWQNAFTMFNDALESGL-ANVFTFNTLLSWLCKEGKMNEACN 388

Query: 408 FWDDIVWPSNIHDNYV-YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466
            WD+++    I  N V Y  +I G CR   I+ A     E++D+G TPN V + +++DG 
Sbjct: 389 LWDEVI-AKGISPNVVSYNNIILGHCRKDNINAACKVYKEMLDNGFTPNAVTFTILMDGY 447

Query: 467 CKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
            K      A+ I   M+   + P   T  I+ K
Sbjct: 448 FKKGDIENAFSIFHRMKDANILPTDTTLGIIIK 480



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 93/223 (41%), Gaps = 38/223 (17%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C  + +  A KL  DMK +G   ++ +Y TLI G+C+  +M  A+++ +E+R  G+
Sbjct: 549 IDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGAGL 608

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEE---DLSV--------------- 102
            PN   Y+ ++ G     +VE A      L+++M  E    DL                 
Sbjct: 609 SPNRFIYNSMITGFKNMNNVEEA----IDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLL 664

Query: 103 ----------------NNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMI 146
                           ++ A   L++ LC +G      +I EDM     +        +I
Sbjct: 665 YASDIHTEMLSKGILPDDRAHTVLINGLCNKGQFENARKILEDMNGKNMIPSVLIYNTLI 724

Query: 147 DSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG 189
               + G    A R+   M  RGL P  ++Y+ +V+G  K  G
Sbjct: 725 AGHFKEGNLQEAFRLHDEMLDRGLVPDNITYDILVNGKFKGDG 767


>gi|302794530|ref|XP_002979029.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
 gi|300153347|gb|EFJ19986.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
          Length = 500

 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 114/403 (28%), Positives = 198/403 (49%), Gaps = 5/403 (1%)

Query: 97  EEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNH 156
           +++++ N   +++++ SL +E    E +++ E+M       + FA   ++    RS    
Sbjct: 3   DKNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNME 62

Query: 157 GASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLV 216
            A  V   M + G  P  VSY+ ++HGL K G    + ++L E +  G  PS   Y  LV
Sbjct: 63  KAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSSLV 122

Query: 217 EGLCGESDLEKARKVLQFML-SKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQC 275
             L     ++ A  +   M+      DR     + L  LC      +       M +  C
Sbjct: 123 RALAKARRVDHASSLFDEMIRGGHHPDRLMFYELIL-GLCQAGKVKDASERFKQMPKHGC 181

Query: 276 QPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEAL 335
           QP+V   N +++G C  G++E+A  +  +M +   C+PD VT+ T++  +    R++E  
Sbjct: 182 QPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHS-CSPDVVTYNTLLDAVCKARRVEEGC 240

Query: 336 NLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG 395
             L++ M   GY P ++T++ ++ GL R   +E+A EVF  ML  G   +  TY  +I G
Sbjct: 241 K-LFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISG 299

Query: 396 LCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELV-DSGVTP 454
           LC + ++ +A+  ++ +       D   Y ++I G C+ G + EA     E+   +G+ P
Sbjct: 300 LCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQP 359

Query: 455 NIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            IV +N +IDG CKL     A +++ EM   GL  D+ T+RIL
Sbjct: 360 TIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADSCTYRIL 402



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 118/472 (25%), Positives = 227/472 (48%), Gaps = 6/472 (1%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           E++K+  +M + G  P+V ++  ++ G+ R+  M+ A +V+  M   G  P++++Y +L+
Sbjct: 28  ESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHILI 87

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP 131
            G+ +   ++ +  ++ ++  R +     + +  A+++LV +L +   V+    + ++M 
Sbjct: 88  HGLAKIGKLDESLKILSEMVMRGQ-----TPSMQAYSSLVRALAKARRVDHASSLFDEMI 142

Query: 132 QGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCM 191
           +G    +      +I  LC++G+   AS     M K G  P++  YN ++HGLC  G   
Sbjct: 143 RGGHHPDRLMFYELILGLCQAGKVKDASERFKQMPKHGCQPNVPVYNVLLHGLCSSGQLE 202

Query: 192 RAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYL 251
           +A  L  E       P   TY  L++ +C    +E+  K+ + M +   V      +  +
Sbjct: 203 QANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAAGYVPNVITFSTLI 262

Query: 252 RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC 311
             LC      + L V   ML+  C+P+  T  T+I+G C+  ++ +A ++   M      
Sbjct: 263 HGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQARELFEKMTQACI- 321

Query: 312 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK 371
            PDAV + ++I G    G + EA  L  ++    G  P IVT+N ++ G  +L ++  A 
Sbjct: 322 PPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRAN 381

Query: 372 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 431
           E+   M   G+ ADS TY I+I GL  + +LDEA   +  +     + D     + + GL
Sbjct: 382 ELVAEMGTKGLAADSCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFVGGL 441

Query: 432 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           C++G I +A         SG  PN   + ++ +   KL    +A +++   +
Sbjct: 442 CKTGNIDQAYAVFEATRKSGAVPNPETFRILSESLIKLGRVEDAQKLMEPAK 493



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 123/481 (25%), Positives = 230/481 (47%), Gaps = 8/481 (1%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M+ +    NV +Y+++I    +  + + +YKV +EM   G  P+   ++ +++G  R+ +
Sbjct: 1   MRDKNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNN 60

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
           +E+A     ++++ M  E     +N ++  L+  L + G ++E  +I  +M         
Sbjct: 61  MEKAR----EVYQHMV-ESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSM 115

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
            A   ++ +L ++ R   AS +   M + G  P  + +  ++ GLC+ G    A +  ++
Sbjct: 116 QAYSSLVRALAKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQ 175

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
             + G  P+   Y VL+ GLC    LE+A  +   M S          N  L A+C  + 
Sbjct: 176 MPKHGCQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARR 235

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
             E   +   M      P+VIT +T+I+G C+ G +E+AL+V   M+    C P+  T+T
Sbjct: 236 VEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAG-CKPNKYTYT 294

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCML- 378
           T+I GL    ++ +A   L++ M Q    P  V YN+++ G  +   ++EA++++  M  
Sbjct: 295 TLISGLCRAEKVIQARE-LFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSG 353

Query: 379 GIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIH 438
           G G+     T+  +IDG C+  +L  A     ++       D+  Y  +I GL R+ K+ 
Sbjct: 354 GAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADSCTYRILIAGLSRATKLD 413

Query: 439 EAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILD 498
           EA+    ++ +     + V     + G CK     +AY +    RK+G  P+  T+RIL 
Sbjct: 414 EALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFEATRKSGAVPNPETFRILS 473

Query: 499 K 499
           +
Sbjct: 474 E 474



 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 104/442 (23%), Positives = 208/442 (47%), Gaps = 44/442 (9%)

Query: 6   GLSRVG---EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           GL+++G   E+ K+  +M  RG  P++ +Y++L+    +   +D A  +FDEM   G  P
Sbjct: 89  GLAKIGKLDESLKILSEMVMRGQTPSMQAYSSLVRALAKARRVDHASSLFDEMIRGGHHP 148

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           + L +  L+ G+ +   V+ A+   FK   +   + ++ V N     L+  LC  G + +
Sbjct: 149 DRLMFYELILGLCQAGKVKDASE-RFKQMPKHGCQPNVPVYNV----LLHGLCSSGQLEQ 203

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
              +  +M       +      ++D++C++ R     ++   MR  G  P+++++++++H
Sbjct: 204 ANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAAGYVPNVITFSTLIH 263

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           GLC+ G   +A ++    ++ G  P+++TY  L+ GLC    + +AR++ + M       
Sbjct: 264 GLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQARELFEKM------- 316

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
            T+ C                             PD +  N++I G+CK G ++EA K+ 
Sbjct: 317 -TQAC---------------------------IPPDAVAYNSLIAGYCKRGSMDEAEKLY 348

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
            +M  G    P  VTF T+I G   +G++  A N L   M  +G +    TY  ++ GL 
Sbjct: 349 REMSGGAGLQPTIVTFNTLIDGFCKLGKLGRA-NELVAEMGTKGLAADSCTYRILIAGLS 407

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
           R  +++EA EV+  M     + D  +    + GLC++  +D+A   ++       + +  
Sbjct: 408 RATKLDEALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFEATRKSGAVPNPE 467

Query: 423 VYAAMIKGLCRSGKIHEAVHFL 444
            +  + + L + G++ +A   +
Sbjct: 468 TFRILSESLIKLGRVEDAQKLM 489



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 85/342 (24%), Positives = 170/342 (49%), Gaps = 2/342 (0%)

Query: 165 MRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESD 224
           MR + +  ++ +Y+SI+  L K      +Y++LEE +  G  P    +  +++G    ++
Sbjct: 1   MRDKNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNN 60

Query: 225 LEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNT 284
           +EKAR+V Q M+           +I +  L  I    E L +L  M+     P +   ++
Sbjct: 61  MEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSS 120

Query: 285 VINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ 344
           ++    K  R++ A  + ++M+ G    PD + F  +I GL   G++++A     Q MP+
Sbjct: 121 LVRALAKARRVDHASSLFDEMIRGGH-HPDRLMFYELILGLCQAGKVKDASERFKQ-MPK 178

Query: 345 RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 404
            G  P +  YN +L GL    ++E+A  +F  M       D  TY  ++D +C++ +++E
Sbjct: 179 HGCQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEE 238

Query: 405 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
             + ++ +     + +   ++ +I GLCR+G++ +A+     ++++G  PN   Y  +I 
Sbjct: 239 GCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLIS 298

Query: 465 GACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           G C+     +A ++  +M +  + PDAV +  L   +  RG+
Sbjct: 299 GLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGS 340



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 87/307 (28%), Positives = 148/307 (48%), Gaps = 39/307 (12%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D +C   RV E  KLF  M++ G+VPNV++++TLIHG CRTGE++ A +VF  M   G 
Sbjct: 227 LDAVCKARRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGC 286

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN  TY+ L+ G+ R   V +A     +L+E+M  +  +  +  A+ +L+   C+ G +
Sbjct: 287 KPNKYTYTTLISGLCRAEKVIQAR----ELFEKMT-QACIPPDAVAYNSLIAGYCKRGSM 341

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E  ++  +M  G                                   GL P++V++N++
Sbjct: 342 DEAEKLYREMSGGA----------------------------------GLQPTIVTFNTL 367

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G CK G   RA +L+ E    G      TY++L+ GL   + L++A +V + M  KK 
Sbjct: 368 IDGFCKLGKLGRANELVAEMGTKGLAADSCTYRILIAGLSRATKLDEALEVYKQMREKKF 427

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           +     C  ++  LC   N  +   V     ++   P+  T   +     K+GR+E+A K
Sbjct: 428 LLDPVSCVSFVGGLCKTGNIDQAYAVFEATRKSGAVPNPETFRILSESLIKLGRVEDAQK 487

Query: 301 VLNDMVA 307
           ++    A
Sbjct: 488 LMEPAKA 494



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/336 (26%), Positives = 154/336 (45%), Gaps = 7/336 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   +V +A + F  M   G  PNV  Y  L+HG C +G+++ A  +F EM+     P+
Sbjct: 160 LCQAGKVKDASERFKQMPKHGCQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPD 219

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY+ L+  V + R VE       KL+E M+    +  N   F+ L+  LCR G + + 
Sbjct: 220 VVTYNTLLDAVCKARRVEEG----CKLFEAMRAAGYVP-NVITFSTLIHGLCRTGELEKA 274

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             +   M +      ++    +I  LCR+ +   A  +   M +  + P  V+YNS++ G
Sbjct: 275 LEVFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAG 334

Query: 184 LCKHGGCMRAYQLLEE-GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
            CK G    A +L  E     G  P+  T+  L++G C    L +A +++  M +K    
Sbjct: 335 YCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAA 394

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
            +    I +  L       E L V   M + +   D ++  + + G CK G I++A  V 
Sbjct: 395 DSCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQAYAVF 454

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLL 338
            +        P+  TF  +   L+ +GR+++A  L+
Sbjct: 455 -EATRKSGAVPNPETFRILSESLIKLGRVEDAQKLM 489


>gi|226493231|ref|NP_001140656.1| hypothetical protein [Zea mays]
 gi|194700420|gb|ACF84294.1| unknown [Zea mays]
 gi|414587025|tpg|DAA37596.1| TPA: hypothetical protein ZEAMMB73_567962 [Zea mays]
          Length = 598

 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 135/471 (28%), Positives = 218/471 (46%), Gaps = 46/471 (9%)

Query: 70  LVRGVLRTRDVERANVLMFKLWERMKEEEDLSV--------NNAAFANLVDSLCREGYVN 121
           LV    R  DV  AN L+  L  R +  +   V          A +  LVD  CR G + 
Sbjct: 86  LVGSSPRPPDVPLANRLVRDLCRRGRPADAARVVEACGPEATAATYGALVDGYCRAGLLE 145

Query: 122 EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
           +  R+   MP     +  +A   +I +LC  GR   A  V+  M  RG  P +V+YN ++
Sbjct: 146 DARRVVGGMPAHVQASSAYAHNPLIHALCERGRVADALVVLDGMLCRGCAPDVVTYNILL 205

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
              CK  G  +A +L++     G  P+  TY V+++ +C E D+++AR++L  + S+   
Sbjct: 206 QAACKGRGYRQALELIDFMRAEGCEPNNVTYNVIIDAMCREGDVDQARELLNSLPSRGCK 265

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
             T   N  L+  C I+   +   +L  M++  C P+  TLN +IN  C+ G +++    
Sbjct: 266 PNTVNYNTVLKGFCSIERWVDADEILDEMVRENCPPNEATLNVIINTLCRKGLLQKVTLY 325

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
           L  M +   C  + VT+  +I G+   G +  AL LL   M   G  P IVTYN VL+GL
Sbjct: 326 LEKM-SKHGCTANVVTYNAVISGMCEQGNVDSALELLSN-MQSFGCKPDIVTYNTVLKGL 383

Query: 362 FRLRRVEEAKEV---------------------FNCMLGI--------------GVVADS 386
               R E+A+E+                     F C  G+              G   +S
Sbjct: 384 CSADRWEDAEELMIKMSQNDRLPDNSTFNTIISFWCQKGLILQAFEVFKQMPEKGCNPNS 443

Query: 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE 446
           TTY+ +I GL ++ ++++A    +++      + + +Y  + + L +  KI E V  +++
Sbjct: 444 TTYSTIIGGLTKAGKMEQALELLNEMAN-KGFNTDKMYRVLTESLNKEDKIEEVVQVVHK 502

Query: 447 LVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           L DSG++P  V YN V+ G C+      A  +L +M   G  PD  T+ IL
Sbjct: 503 LQDSGISPQTVLYNTVLLGLCRNGKTDYAIDVLADMVSCGCMPDESTYIIL 553



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 122/457 (26%), Positives = 203/457 (44%), Gaps = 43/457 (9%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   RV +A  +   M  RG  P+VV+Y  L+   C+      A ++ D MR  G  PN
Sbjct: 173 LCERGRVADALVVLDGMLCRGCAPDVVTYNILLQAACKGRGYRQALELIDFMRAEGCEPN 232

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           ++TY+V++  + R  DV++A  L+  L  R         N   +  ++   C      + 
Sbjct: 233 NVTYNVIIDAMCREGDVDQARELLNSLPSR-----GCKPNTVNYNTVLKGFCSIERWVDA 287

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             I ++M +      E     +I++LCR G     +  +  M K G T ++V+YN+++ G
Sbjct: 288 DEILDEMVRENCPPNEATLNVIINTLCRKGLLQKVTLYLEKMSKHGCTANVVTYNAVISG 347

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           +C+ G    A +LL     FG  P   TY  +++GLC     E A +++           
Sbjct: 348 MCEQGNVDSALELLSNMQSFGCKPDIVTYNTVLKGLCSADRWEDAEELM----------- 396

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                                   + M Q    PD  T NT+I+ +C+ G I +A +V  
Sbjct: 397 ------------------------IKMSQNDRLPDNSTFNTIISFWCQKGLILQAFEVFK 432

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            M   K C P++ T++TII GL   G++++AL LL + M  +G++   + Y  +   L +
Sbjct: 433 QM-PEKGCNPNSTTYSTIIGGLTKAGKMEQALELLNE-MANKGFNTDKM-YRVLTESLNK 489

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
             ++EE  +V + +   G+   +  Y  V+ GLC + + D A     D+V    + D   
Sbjct: 490 EDKIEEVVQVVHKLQDSGISPQTVLYNTVLLGLCRNGKTDYAIDVLADMVSCGCMPDEST 549

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYN 460
           Y  +I+GL   G   EA   L  L    V  N +  N
Sbjct: 550 YIILIEGLFYEGYSKEARELLSRLCSRDVLSNSLIKN 586



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 83/358 (23%), Positives = 168/358 (46%), Gaps = 7/358 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D +C    V +A +L   + SRG  PN V+Y T++ G+C       A ++ DEM     
Sbjct: 240 IDAMCREGDVDQARELLNSLPSRGCKPNTVNYNTVLKGFCSIERWVDADEILDEMVRENC 299

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN  T +V++  + R   +++  + + K+      +   + N   +  ++  +C +G V
Sbjct: 300 PPNEATLNVIINTLCRKGLLQKVTLYLEKM-----SKHGCTANVVTYNAVISGMCEQGNV 354

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +    +  +M       +      ++  LC + R   A  ++  M +    P   ++N+I
Sbjct: 355 DSALELLSNMQSFGCKPDIVTYNTVLKGLCSADRWEDAEELMIKMSQNDRLPDNSTFNTI 414

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +   C+ G  ++A+++ ++  + G  P+  TY  ++ GL     +E+A ++L  M + K 
Sbjct: 415 ISFWCQKGLILQAFEVFKQMPEKGCNPNSTTYSTIIGGLTKAGKMEQALELLNEM-ANKG 473

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
            +  ++  +   +L       E++ V+  +  +   P  +  NTV+ G C+ G+ + A+ 
Sbjct: 474 FNTDKMYRVLTESLNKEDKIEEVVQVVHKLQDSGISPQTVLYNTVLLGLCRNGKTDYAID 533

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
           VL DMV+   C PD  T+  +I GL   G  +EA  LL ++  +   S  ++   A+L
Sbjct: 534 VLADMVSCG-CMPDESTYIILIEGLFYEGYSKEARELLSRLCSRDVLSNSLIKNEALL 590



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 128/280 (45%), Gaps = 50/280 (17%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M   G   NVV+Y  +I G C  G +D A ++   M+  G  P+ +TY+ +++G+     
Sbjct: 329 MSKHGCTANVVTYNAVISGMCEQGNVDSALELLSNMQSFGCKPDIVTYNTVLKGLCSADR 388

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
            E A  LM K+      + D   +N+ F  ++   C++G + + F + + MP+       
Sbjct: 389 WEDAEELMIKM-----SQNDRLPDNSTFNTIISFWCQKGLILQAFEVFKQMPEKGCNPNS 443

Query: 140 FACGHMIDSLCRSGR------------NHGAS----------------------RVVYVM 165
                +I  L ++G+            N G +                      +VV+ +
Sbjct: 444 TTYSTIIGGLTKAGKMEQALELLNEMANKGFNTDKMYRVLTESLNKEDKIEEVVQVVHKL 503

Query: 166 RKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDL 225
           +  G++P  V YN+++ GLC++G    A  +L + +  G +P E TY +L+EGL  E   
Sbjct: 504 QDSGISPQTVLYNTVLLGLCRNGKTDYAIDVLADMVSCGCMPDESTYIILIEGLFYEGYS 563

Query: 226 EKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 265
           ++AR++L           +R+C+  + +  LIKN   LL+
Sbjct: 564 KEARELL-----------SRLCSRDVLSNSLIKNEALLLD 592


>gi|218193284|gb|EEC75711.1| hypothetical protein OsI_12542 [Oryza sativa Indica Group]
          Length = 1031

 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 131/510 (25%), Positives = 233/510 (45%), Gaps = 28/510 (5%)

Query: 6   GLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP--- 62
           G  ++  A  +F  M  +   P+V +YT LI GYCR G  D A +V  EM+  GV P   
Sbjct: 346 GEGKINLAIYIFNQMLRQSLKPSVATYTALIDGYCRNGRTDEARRVLYEMQITGVRPREV 405

Query: 63  -----------------NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNA 105
                            + +TYS L+ G+ +   +        ++  RM++   L  NN 
Sbjct: 406 SKAKQILKCMLADGIDPDVITYSALINGMCKMGMIHETK----EILSRMQKSGVLP-NNV 460

Query: 106 AFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVM 165
            +  LV   C+ G+  E  +   D+ +   V        ++ S  R G    A +    M
Sbjct: 461 LYTTLVFYFCKAGHAKEALKYFVDIYRSGLVANSVIHNALLCSFYREGMIAEAEQFKQYM 520

Query: 166 RKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDL 225
            +  ++  + S+N I+   C+ G  + A+ + +  ++ G+ P   TY  L+ GLC    L
Sbjct: 521 SRMKISFDVASFNCIIDSYCQRGNVLEAFSVYDNMVRHGWPPDICTYGSLLRGLCQGGHL 580

Query: 226 EKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTV 285
            +A++ + ++L K      +  N  L  +C      E L++   M+     PD  T   +
Sbjct: 581 VQAKEFMVYLLEKACAIDEKTLNTLLVGICKHGTLDEALDLCEKMVTRNILPDTYTYTIL 640

Query: 286 INGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQR 345
           ++GFCK G+I  AL +L  M+  K   PD + +T ++ GL+N G+++ A  +  +++ + 
Sbjct: 641 LDGFCKRGKIVPAL-ILLQMMLEKGLVPDTIAYTCLLNGLVNEGQVKAASYMFQEIICKE 699

Query: 346 GYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA 405
           G     + YN+++ G  +  ++ E + +   M    V   S +Y I++ G  +  QL   
Sbjct: 700 GLYADCIAYNSMMNGYLKGGQINEIERLMRNMHENEVYPSSASYNILMHGYIKKGQLSRT 759

Query: 406 KRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELV--DSGVTPNIVCYNVVI 463
              + D+V      DN  Y  +I GLC  G I  AV FL ++V  +SG+ P    Y  +I
Sbjct: 760 LYLYRDMVKEGIKPDNVTYRLLIFGLCEYGLIEIAVKFLEKMVLEESGLQPKHTHYIALI 819

Query: 464 DGACKLSMKREAYQILREMRKNGLNPDAVT 493
           +  C++     A+++  +M+  G+ P  V 
Sbjct: 820 NAKCRVGDIDGAFELKEDMKALGVVPSEVA 849



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 130/508 (25%), Positives = 241/508 (47%), Gaps = 26/508 (5%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ +C +  + E  ++   M+  G +PN V YTTL+  +C+ G    A K F ++   G+
Sbjct: 431 INGMCKMGMIHETKEILSRMQKSGVLPNNVLYTTLVFYFCKAGHAKEALKYFVDIYRSGL 490

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLW-ERMKEEEDLSVNNAAFANLVDSLCREGY 119
           + NS+ ++ L+    R   +  A    FK +  RMK    +S + A+F  ++DS C+ G 
Sbjct: 491 VANSVIHNALLCSFYREGMIAEAE--QFKQYMSRMK----ISFDVASFNCIIDSYCQRGN 544

Query: 120 VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           V E F + ++M +     +    G ++  LC+ G    A   +  + ++       + N+
Sbjct: 545 VLEAFSVYDNMVRHGWPPDICTYGSLLRGLCQGGHLVQAKEFMVYLLEKACAIDEKTLNT 604

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++ G+CKHG    A  L E+ +    LP  +TY +L++G C    +  A  +LQ ML K 
Sbjct: 605 LLVGICKHGTLDEALDLCEKMVTRNILPDTYTYTILLDGFCKRGKIVPALILLQMMLEKG 664

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQ----PDVITLNTVINGFCKMGRI 295
            V  T      L  L    N  ++        +  C+     D I  N+++NG+ K G+I
Sbjct: 665 LVPDTIAYTCLLNGLV---NEGQVKAASYMFQEIICKEGLYADCIAYNSMMNGYLKGGQI 721

Query: 296 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN 355
            E  +++ +M   +   P + ++  ++ G +  G++   L  LY+ M + G  P  VTY 
Sbjct: 722 NEIERLMRNMHENEV-YPSSASYNILMHGYIKKGQLSRTL-YLYRDMVKEGIKPDNVTYR 779

Query: 356 AVLRGLFRLRRVEEAKEVFNCML--GIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI- 412
            ++ GL     +E A +    M+    G+    T Y  +I+  C    +D A    +D+ 
Sbjct: 780 LLIFGLCEYGLIEIAVKFLEKMVLEESGLQPKHTHYIALINAKCRVGDIDGAFELKEDMK 839

Query: 413 ---VWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKL 469
              V PS + +    +++++GLC+ GK+ EA+     ++ +G+ P I  +  ++ G CK 
Sbjct: 840 ALGVVPSEVAE----SSIVRGLCKCGKVEEAIIVFSSIMRAGMVPTIATFTTLMHGLCKE 895

Query: 470 SMKREAYQILREMRKNGLNPDAVTWRIL 497
               +A+ + + M   GL  D VT+ +L
Sbjct: 896 FKIDDAFHLKQLMESCGLKVDVVTYNVL 923



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 121/505 (23%), Positives = 211/505 (41%), Gaps = 93/505 (18%)

Query: 28  NVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLM 87
           +V +   +++  C  G++  A  +  +M++C  LPN++TY+ ++                
Sbjct: 229 DVTTCNIVLNSLCTQGKLSKAESMLQKMKNCR-LPNAVTYNTILN--------------- 272

Query: 88  FKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMID 147
              W                        ++G      RI +DM +     + +    MID
Sbjct: 273 ---W----------------------YVKKGRCKSALRILDDMEKNGIEADLYTYNIMID 307

Query: 148 SLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLP 207
            LC+  R+  A  ++  MR+  LTP   SYN+++HG    G    A  +  + ++    P
Sbjct: 308 KLCKLKRSARAYLLLKRMREVNLTPDECSYNTLIHGFFGEGKINLAIYIFNQMLRQSLKP 367

Query: 208 SEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVL 267
           S  TY  L++G C     ++AR+VL  M         +I  +  R +   K       +L
Sbjct: 368 SVATYTALIDGYCRNGRTDEARRVLYEM---------QITGVRPREVSKAKQ------IL 412

Query: 268 VFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLN 327
             ML     PDVIT + +ING CKMG I E  ++L+ M       P+ V +TT++F    
Sbjct: 413 KCMLADGIDPDVITYSALINGMCKMGMIHETKEILSRMQKSGV-LPNNVLYTTLVFYFCK 471

Query: 328 VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADST 387
            G  +EAL     +  + G     V +NA+L   +R   + EA++    M  + +  D  
Sbjct: 472 AGHAKEALKYFVDIY-RSGLVANSVIHNALLCSFYREGMIAEAEQFKQYMSRMKISFDVA 530

Query: 388 TYAIVIDGLCESNQLDEAKRFWDDIV---WPSNI--------------H----------- 419
           ++  +ID  C+   + EA   +D++V   WP +I              H           
Sbjct: 531 SFNCIIDSYCQRGNVLEAFSVYDNMVRHGWPPDICTYGSLLRGLCQGGHLVQAKEFMVYL 590

Query: 420 -------DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMK 472
                  D      ++ G+C+ G + EA+    ++V   + P+   Y +++DG CK    
Sbjct: 591 LEKACAIDEKTLNTLLVGICKHGTLDEALDLCEKMVTRNILPDTYTYTILLDGFCKRGKI 650

Query: 473 REAYQILREMRKNGLNPDAVTWRIL 497
             A  +L+ M + GL PD + +  L
Sbjct: 651 VPALILLQMMLEKGLVPDTIAYTCL 675



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 109/495 (22%), Positives = 216/495 (43%), Gaps = 52/495 (10%)

Query: 4   LCGLSRVG---EAHKLFFDMKSRGHVP-NVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCG 59
           LC   R G   EA + F    SR  +  +V S+  +I  YC+ G +  A+ V+D M   G
Sbjct: 501 LCSFYREGMIAEAEQ-FKQYMSRMKISFDVASFNCIIDSYCQRGNVLEAFSVYDNMVRHG 559

Query: 60  VLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGY 119
             P+  TY  L+RG+ +   + +A   M  L E+       +++      L+  +C+ G 
Sbjct: 560 WPPDICTYGSLLRGLCQGGHLVQAKEFMVYLLEKA-----CAIDEKTLNTLLVGICKHGT 614

Query: 120 VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           ++E   + E M     + + +    ++D  C+ G+   A  ++ +M ++GL P  ++Y  
Sbjct: 615 LDEALDLCEKMVTRNILPDTYTYTILLDGFCKRGKIVPALILLQMMLEKGLVPDTIAYTC 674

Query: 180 IVHGLCKHGGCMRAYQLLEE---------------GIQFGYL------------------ 206
           +++GL   G    A  + +E                +  GYL                  
Sbjct: 675 LLNGLVNEGQVKAASYMFQEIICKEGLYADCIAYNSMMNGYLKGGQINEIERLMRNMHEN 734

Query: 207 ---PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALC---LIKNP 260
              PS  +Y +L+ G   +  L +   + + M+ +          + +  LC   LI+  
Sbjct: 735 EVYPSSASYNILMHGYIKKGQLSRTLYLYRDMVKEGIKPDNVTYRLLIFGLCEYGLIEIA 794

Query: 261 TELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTT 320
            + L  +V + ++  QP       +IN  C++G I+ A ++  DM A     P  V  ++
Sbjct: 795 VKFLEKMV-LEESGLQPKHTHYIALINAKCRVGDIDGAFELKEDMKALGV-VPSEVAESS 852

Query: 321 IIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI 380
           I+ GL   G+++EA+ +   +M + G  P I T+  ++ GL +  ++++A  +   M   
Sbjct: 853 IVRGLCKCGKVEEAIIVFSSIM-RAGMVPTIATFTTLMHGLCKEFKIDDAFHLKQLMESC 911

Query: 381 GVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEA 440
           G+  D  TY ++I GLC    + +A   ++++     + +   Y  +   +  +G + + 
Sbjct: 912 GLKVDVVTYNVLITGLCNKKCICDALDLYEEMKSKGLLPNITTYITLTGAMYATGTMQDG 971

Query: 441 VHFLYELVDSGVTPN 455
              L ++ D G+ P+
Sbjct: 972 EKLLKDIEDRGIVPS 986


>gi|78708657|gb|ABB47632.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica Group]
          Length = 1080

 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 147/579 (25%), Positives = 264/579 (45%), Gaps = 104/579 (17%)

Query: 20   MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTR- 78
            MKS+G VP+VV+   ++ G  ++G + +A +VF E++  GV P+++TY+++++   +   
Sbjct: 431  MKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASK 490

Query: 79   ------------------DVERANVLMFKLWERMKEEE-----------DLSVNNAAFAN 109
                              DV   N L+  L++  + +E           +L   +  +  
Sbjct: 491  FDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYNT 550

Query: 110  LVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRG 169
            L+  L REG V EV  + E+M              ++D LC++G  + A  ++Y M  +G
Sbjct: 551  LLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKG 610

Query: 170  LTPSLVSYNSIVHGLCKHGGCMRAYQ---------------------------LLEEGI- 201
              P L SYN++++GL K      A+                            L++E + 
Sbjct: 611  CIPDLSSYNTVIYGLVKEERYNEAFSIFCQMKKVLIPDYATLCTILPSFVKIGLMKEALH 670

Query: 202  -------QFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK-DVDRTRICNIYLRA 253
                   Q G      +   L+EG+  ++ +EK+ +  + + S    +D   +C + ++ 
Sbjct: 671  IIKDYFLQPGSKTDRSSCHSLMEGILKKAGIEKSIEFAEIIASSGITLDDFFLCPL-IKH 729

Query: 254  LCLIKNPTE------------------LLNVLVF-----------------MLQTQCQPD 278
            LC  K   E                  L N L+                  M +  C PD
Sbjct: 730  LCKQKKALEAHELVKKFKSFGVSLKTGLYNSLICGLVDENLIDIAEGLFAEMKELGCGPD 789

Query: 279  VITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLL 338
              T N +++   K  RIEE LKV  +M    +     VT+ TII GL+   R+++A++L 
Sbjct: 790  EFTYNLLLDAMGKSMRIEEMLKVQEEMHRKGY-ESTYVTYNTIISGLVKSRRLEQAIDLY 848

Query: 339  YQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE 398
            Y +M Q G+SP   TY  +L GL +  R+E+A+ +FN ML  G  A+ T Y I+++G   
Sbjct: 849  YNLMSQ-GFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRI 907

Query: 399  SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVC 458
            +   ++    + D+V      D   Y  +I  LC++G++++ + +  +L++ G+ P+++ 
Sbjct: 908  AGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLIT 967

Query: 459  YNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            YN++IDG  K     EA  +  EM+K G+ P+  T+  L
Sbjct: 968  YNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSL 1006



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 127/570 (22%), Positives = 237/570 (41%), Gaps = 65/570 (11%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC + RV EA ++F +MK +G VP   SY +LI G+ +      A ++F  M   G 
Sbjct: 342 IDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHGP 401

Query: 61  LPNSLTYSVLV----------RGVLR---------TRDVERANVLMFKLWERMK------ 95
            PN  T+ + +          + + R           DV   N ++F L +  +      
Sbjct: 402 KPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKR 461

Query: 96  -----EEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC 150
                +   +S +   +  ++    +    +E  +I  DM +   V +  A   +ID+L 
Sbjct: 462 VFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLY 521

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
           ++GR   A R+ Y +++  L P+  +YN+++ GL + G       LLEE     Y P+  
Sbjct: 522 KAGRGDEAWRIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLI 581

Query: 211 TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM 270
           TY  +++ LC    +  A  +L  M +K  +      N  +  L   +   E  ++   M
Sbjct: 582 TYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQM 641

Query: 271 LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR 330
            +    PD  TL T++  F K+G ++EAL ++ D         D  +  +++ G+L    
Sbjct: 642 KKVLI-PDYATLCTILPSFVKIGLMKEALHIIKDYFLQPGSKTDRSSCHSLMEGILKKAG 700

Query: 331 IQEALNL----------------------------------LYQVMPQRGYSPGIVTYNA 356
           I++++                                    L +     G S     YN+
Sbjct: 701 IEKSIEFAEIIASSGITLDDFFLCPLIKHLCKQKKALEAHELVKKFKSFGVSLKTGLYNS 760

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416
           ++ GL     ++ A+ +F  M  +G   D  TY +++D + +S +++E  +  +++    
Sbjct: 761 LICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKG 820

Query: 417 NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAY 476
                  Y  +I GL +S ++ +A+   Y L+  G +P    Y  ++DG  K     +A 
Sbjct: 821 YESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAE 880

Query: 477 QILREMRKNGLNPDAVTWRILDKLHGNRGN 506
            +  EM + G   +   + IL   H   GN
Sbjct: 881 NLFNEMLEYGCKANCTIYNILLNGHRIAGN 910



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 123/529 (23%), Positives = 233/529 (44%), Gaps = 45/529 (8%)

Query: 4    LCGLSRVG---EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
            L GL R G   E   L  +M    + PN+++Y T++   C+ G ++ A  +   M   G 
Sbjct: 552  LAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGC 611

Query: 61   LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            +P+  +Y+ ++ G+++      A    F ++ +MK+   L  + A    ++ S  + G +
Sbjct: 612  IPDLSSYNTVIYGLVKEERYNEA----FSIFCQMKKV--LIPDYATLCTILPSFVKIGLM 665

Query: 121  NEVFRIAED-MPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
             E   I +D   Q  S  +  +C  +++ + +      +     ++   G+T        
Sbjct: 666  KEALHIIKDYFLQPGSKTDRSSCHSLMEGILKKAGIEKSIEFAEIIASSGITLDDFFLCP 725

Query: 180  IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
            ++  LCK    + A++L+++   FG       Y  L+ GL  E+ ++ A  +   M    
Sbjct: 726  LIKHLCKQKKALEAHELVKKFKSFGVSLKTGLYNSLICGLVDENLIDIAEGLFAEMKELG 785

Query: 240  DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                    N+ L A+       E+L V   M +   +   +T NT+I+G  K  R+E+A+
Sbjct: 786  CGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAI 845

Query: 300  KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNL---------------------- 337
             +  ++++  F +P   T+  ++ GLL  GRI++A NL                      
Sbjct: 846  DLYYNLMSQGF-SPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNG 904

Query: 338  ------------LYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 385
                        L+Q M  +G +P I +Y  ++  L +  ++ +    F  +L +G+  D
Sbjct: 905  HRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPD 964

Query: 386  STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY 445
              TY ++IDGL +S +L+EA   ++++     + + Y Y ++I  L ++GK  EA     
Sbjct: 965  LITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYE 1024

Query: 446  ELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
            EL+  G  PN+  YN +I G         AY     M   G  P++ T+
Sbjct: 1025 ELLTKGWKPNVFTYNALIRGYSVSGSTDSAYAAYGRMIVGGCLPNSSTY 1073



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 122/513 (23%), Positives = 210/513 (40%), Gaps = 83/513 (16%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           MK  G V N  +Y  L++   ++G    A +V+  M   GV+P+  TYSVL+    + RD
Sbjct: 151 MKEAGIVLNAYTYNGLVYFLVKSGFDREALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRD 210

Query: 80  VERANVLMFKLWE-RMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNE 138
           VE        LW  R  E   +  N  ++   +  L +    +E +RI   M       +
Sbjct: 211 VETV------LWLLREMEAHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPD 264

Query: 139 EFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLE 198
                 +I  LC +GR   A  V + M+K    P  V+Y +++     +G      ++  
Sbjct: 265 VITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWN 324

Query: 199 EGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIK 258
                GY  +   Y  +++                                   ALC + 
Sbjct: 325 AMKADGYNDNVVAYTAVID-----------------------------------ALCQVG 349

Query: 259 NPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTF 318
              E L +   M Q    P+  + N++I+GF K  R  +AL++   M       P    +
Sbjct: 350 RVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHM---DIHGPKPNGY 406

Query: 319 TTIIFGLLNVGRIQEALNLL--YQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNC 376
           T ++F +   G+  E++  +  Y++M  +G  P +V  NAVL GL +  R+  AK VF+ 
Sbjct: 407 THVLF-INYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHE 465

Query: 377 MLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD---------------- 420
           +  +GV  D+ TY ++I    ++++ DEA + + D++  + + D                
Sbjct: 466 LKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGR 525

Query: 421 -------------------NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNV 461
                              +  Y  ++ GL R GK+ E +H L E+  S   PN++ YN 
Sbjct: 526 GDEAWRIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNT 585

Query: 462 VIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
           ++D  CK     +A  +L  M   G  PD  ++
Sbjct: 586 ILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSY 618



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 92/385 (23%), Positives = 158/385 (41%), Gaps = 41/385 (10%)

Query: 122 EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
           E FR A   P  +  +   +C +M++ +   GR    + V  VM+++ +  ++ ++ +I 
Sbjct: 75  ERFRSAARKP--RVAHTTASCNYMLELMRGHGRVGDMAEVFDVMQRQIVKANVGTFAAIF 132

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
            GL   GG   A   L    + G + + +TY  LV                 + L K   
Sbjct: 133 GGLGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLV-----------------YFLVKSGF 175

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
           DR                  E L V   M+     P V T + ++  F K   +E  L +
Sbjct: 176 DR------------------EALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWL 217

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
           L +M A     P+  ++T  I  L    R  EA  +L + M   G  P ++T+  +++ L
Sbjct: 218 LREMEA-HGVKPNVYSYTICIRVLGQAKRFDEAYRILAK-MENEGCKPDVITHTVLIQVL 275

Query: 362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
               R+ +AK+VF  M       D  TY  ++D   ++         W+  +     +DN
Sbjct: 276 CDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWN-AMKADGYNDN 334

Query: 422 YV-YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
            V Y A+I  LC+ G++ EA+    E+   G+ P    YN +I G  K     +A ++ +
Sbjct: 335 VVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFK 394

Query: 481 EMRKNGLNPDAVTWRILDKLHGNRG 505
            M  +G  P+  T  +    +G  G
Sbjct: 395 HMDIHGPKPNGYTHVLFINYYGKSG 419



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 93/215 (43%), Gaps = 5/215 (2%)

Query: 1    MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
            +D L    R+ +A  LF +M   G   N   Y  L++G+   G  +    +F +M   G+
Sbjct: 867  LDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGI 926

Query: 61   LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             P+  +Y++++  + +   +        +L E M  E DL   N     L+D L +   +
Sbjct: 927  NPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLE-MGLEPDLITYNL----LIDGLGKSKRL 981

Query: 121  NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
             E   +  +M +   V   +    +I  L ++G+   A ++   +  +G  P++ +YN++
Sbjct: 982  EEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLTKGWKPNVFTYNAL 1041

Query: 181  VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVL 215
            + G    G    AY      I  G LP+  TY  L
Sbjct: 1042 IRGYSVSGSTDSAYAAYGRMIVGGCLPNSSTYMQL 1076


>gi|413949109|gb|AFW81758.1| hypothetical protein ZEAMMB73_033635 [Zea mays]
          Length = 691

 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 137/520 (26%), Positives = 233/520 (44%), Gaps = 69/520 (13%)

Query: 8   SRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTY 67
           + +  A + F  M S G  PNV +Y  LI   C  G    A  +  +MR  G  PN +TY
Sbjct: 129 ASLTSARRFFDSMLSDGVAPNVYTYNILIRALCGRGHRKEALSILRDMRGAGCGPNVVTY 188

Query: 68  SVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIA 127
           + LV    R  +V+ A  L+      M  +  L  N   F ++V+ +C+ G + +  ++ 
Sbjct: 189 NTLVAAFFRAGEVDGAERLV-----GMMLDGGLKPNLVTFNSMVNGMCKAGKMEDARKVF 243

Query: 128 EDM------PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
           ++M      P G S N       ++   C++G +H A  V   M ++G+ P +V++ S++
Sbjct: 244 DEMMREGLAPDGVSYNT------LVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLI 297

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
           H +CK G    A  L+ +  + G   +E T+  L++G C +  L+ A   ++ M      
Sbjct: 298 HVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGM------ 351

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
              R C I                          +P V+  N +ING+C +GR++EA ++
Sbjct: 352 ---RQCRI--------------------------KPSVVCYNALINGYCMVGRMDEAREL 382

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
           L++M A K   PD VT++TII           A   L Q M ++G  P  +TY++++R L
Sbjct: 383 LHEMEA-KGLKPDVVTYSTIISAYCKNCDTHSAFE-LNQQMLEKGVLPDAITYSSLIRVL 440

Query: 362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
              +R+ +A  +F  M+ +G+  D  TY  +IDG C+   ++ A    D +V    + D 
Sbjct: 441 CEEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVERALSLHDKMVKAGVLPDV 500

Query: 422 YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYN---------------VVIDGA 466
             Y+ +I GL +S +  EA   L++L      P    Y+                ++ G 
Sbjct: 501 VTYSVLINGLSKSARAMEAQQLLFKLYHEEPIPANTKYDALMHCCRKAELKSVLALLKGF 560

Query: 467 CKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           C   +  EA ++ + M     N D   + +L   H   GN
Sbjct: 561 CMKGLMNEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGN 600



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 133/503 (26%), Positives = 226/503 (44%), Gaps = 62/503 (12%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           +C   ++ +A K+F +M   G  P+ VSY TL+ GYC+ G    A  VF EM   G++P+
Sbjct: 230 MCKAGKMEDARKVFDEMMREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPD 289

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +T++ L+  + +  ++E A  L+ ++ ER      L +N   F  L+D  C++G++++ 
Sbjct: 290 VVTFTSLIHVMCKAGNLEWAVTLVRQMRER-----GLQMNEVTFTALIDGFCKKGFLDDA 344

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
                 M Q +          +I+  C  GR   A  +++ M  +GL P +V+Y++I+  
Sbjct: 345 LLAVRGMRQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISA 404

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK+     A++L ++ ++ G LP   TY  L+  LC E  L  A               
Sbjct: 405 YCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCEEKRLSDAH-------------- 450

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                       L KN          M++   QPD  T  ++I+G CK G +E AL + +
Sbjct: 451 -----------VLFKN----------MIKLGLQPDEFTYTSLIDGHCKEGNVERALSLHD 489

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            MV      PD VT++ +I GL    R  EA  LL+++     Y    +  N     L  
Sbjct: 490 KMVKAGVL-PDVVTYSVLINGLSKSARAMEAQQLLFKL-----YHEEPIPANTKYDALMH 543

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
             R  E K V                  ++ G C    ++EA + +  ++  +   D  V
Sbjct: 544 CCRKAELKSVL----------------ALLKGFCMKGLMNEADKVYQSMLDRNWNLDGSV 587

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y+ +I G CR+G + +A+ F  +++  G  PN      +I G  +  M  EA Q+++++ 
Sbjct: 588 YSVLIHGHCRAGNVMKALSFHKQMLQRGFAPNSTSTISLIRGLFENGMVVEADQVIQQLL 647

Query: 484 KNGLNPDAVTWRILDKLHGNRGN 506
                 DA   + L  L+ N GN
Sbjct: 648 NCCSLADAEASKALIDLNLNEGN 670



 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 123/456 (26%), Positives = 209/456 (45%), Gaps = 43/456 (9%)

Query: 24  GHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERA 83
           G+VP+V++Y  ++        +  A + FD M   GV PN  TY++L+R           
Sbjct: 111 GYVPSVLAYNAVLLAL-SDASLTSARRFFDSMLSDGVAPNVYTYNILIR----------- 158

Query: 84  NVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACG 143
                                        +LC  G+  E   I  DM             
Sbjct: 159 -----------------------------ALCGRGHRKEALSILRDMRGAGCGPNVVTYN 189

Query: 144 HMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQF 203
            ++ +  R+G   GA R+V +M   GL P+LV++NS+V+G+CK G    A ++ +E ++ 
Sbjct: 190 TLVAAFFRAGEVDGAERLVGMMLDGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMMRE 249

Query: 204 GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTEL 263
           G  P   +Y  LV G C      +A  V   M  K  +         +  +C   N    
Sbjct: 250 GLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLEWA 309

Query: 264 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF 323
           + ++  M +   Q + +T   +I+GFCK G +++AL  +  M   +   P  V +  +I 
Sbjct: 310 VTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMRQCRI-KPSVVCYNALIN 368

Query: 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 383
           G   VGR+ EA  LL++ M  +G  P +VTY+ ++    +      A E+   ML  GV+
Sbjct: 369 GYCMVGRMDEARELLHE-MEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVL 427

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
            D+ TY+ +I  LCE  +L +A   + +++      D + Y ++I G C+ G +  A+  
Sbjct: 428 PDAITYSSLIRVLCEEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVERALSL 487

Query: 444 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
             ++V +GV P++V Y+V+I+G  K +   EA Q+L
Sbjct: 488 HDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLL 523



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 90/333 (27%), Positives = 168/333 (50%), Gaps = 11/333 (3%)

Query: 169 GLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKA 228
           G  PS+++YN+++  L        A +  +  +  G  P+ +TY +L+  LCG    ++A
Sbjct: 111 GYVPSVLAYNAVLLAL-SDASLTSARRFFDSMLSDGVAPNVYTYNILIRALCGRGHRKEA 169

Query: 229 RKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVING 288
             +L+ M            N  + A            ++  ML    +P+++T N+++NG
Sbjct: 170 LSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMLDGGLKPNLVTFNSMVNG 229

Query: 289 FCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYS 348
            CK G++E+A KV ++M+     APD V++ T++ G    G   EAL++  + M Q+G  
Sbjct: 230 MCKAGKMEDARKVFDEMMREGL-APDGVSYNTLVGGYCKAGCSHEALSVFAE-MTQKGIM 287

Query: 349 PGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA--- 405
           P +VT+ +++  + +   +E A  +   M   G+  +  T+  +IDG C+   LD+A   
Sbjct: 288 PDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLA 347

Query: 406 -KRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
            +      + PS +     Y A+I G C  G++ EA   L+E+   G+ P++V Y+ +I 
Sbjct: 348 VRGMRQCRIKPSVV----CYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIIS 403

Query: 465 GACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
             CK      A+++ ++M + G+ PDA+T+  L
Sbjct: 404 AYCKNCDTHSAFELNQQMLEKGVLPDAITYSSL 436



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 84/346 (24%), Positives = 165/346 (47%), Gaps = 29/346 (8%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C + R+ EA +L  +M+++G  P+VV+Y+T+I  YC+  +   A+++  +M   GVLP++
Sbjct: 371 CMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDA 430

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           +TYS L+R +   + +  A+VL FK   ++  + D       + +L+D  C+EG V    
Sbjct: 431 ITYSSLIRVLCEEKRLSDAHVL-FKNMIKLGLQPD----EFTYTSLIDGHCKEGNVERAL 485

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
            + + M +   + +      +I+ L +S R   A ++++ +      P+   Y++++H  
Sbjct: 486 SLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHEEPIPANTKYDALMH-- 543

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
                C R  +L              +   L++G C +  + +A KV Q ML +      
Sbjct: 544 -----CCRKAEL-------------KSVLALLKGFCMKGLMNEADKVYQSMLDRNWNLDG 585

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
            + ++ +   C   N  + L+    MLQ    P+  +  ++I G  + G + EA +V+  
Sbjct: 586 SVYSVLIHGHCRAGNVMKALSFHKQMLQRGFAPNSTSTISLIRGLFENGMVVEADQVIQQ 645

Query: 305 MVAGKFCA-PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSP 349
           ++    C+  DA     +I   LN G +   L++L+  M + G  P
Sbjct: 646 LL--NCCSLADAEASKALIDLNLNEGNVDAVLDVLHG-MAKDGLLP 688



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 52/235 (22%), Positives = 94/235 (40%), Gaps = 25/235 (10%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C    V  A  L   M   G +P+VV+Y+ LI+G  ++     A ++  ++ H   
Sbjct: 472 IDGHCKEGNVERALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHEEP 531

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P +  Y  L+      R  E  +VL                       L+   C +G +
Sbjct: 532 IPANTKYDALMHCC---RKAELKSVLA----------------------LLKGFCMKGLM 566

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           NE  ++ + M       +      +I   CR+G    A      M +RG  P+  S  S+
Sbjct: 567 NEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQMLQRGFAPNSTSTISL 626

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM 235
           + GL ++G  + A Q++++ +    L      K L++    E +++    VL  M
Sbjct: 627 IRGLFENGMVVEADQVIQQLLNCCSLADAEASKALIDLNLNEGNVDAVLDVLHGM 681


>gi|357473969|ref|XP_003607269.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein-like
           protein [Medicago truncatula]
 gi|355508324|gb|AES89466.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein-like
           protein [Medicago truncatula]
          Length = 970

 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 138/528 (26%), Positives = 241/528 (45%), Gaps = 45/528 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC    + +A  L+ +M S     N V+Y+ LI  +C+ G +DVA   F  M   G+
Sbjct: 365 INALCKGEDLDKAELLYKNMHSMNLPLNDVTYSILIDSFCKRGMLDVAESYFGRMIEDGI 424

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
                 Y+ L+ G  +  D+  A  L  K+       E L      F  L+   C++  V
Sbjct: 425 RETIYPYNSLINGHCKFGDLSAAEFLYTKMIN-----EGLEPTATTFTTLISGYCKDLQV 479

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            + F++  +M + +     +    +I  LC +     AS++   M +R + P+ V+YN +
Sbjct: 480 EKAFKLYREMNEKEIAPSVYTFTALIYGLCSTNEMAEASKLFDEMVERKIKPTEVTYNVM 539

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G CK     +A++LLE+ +  G +P  +TY+ L+ GLC    +  A+  +   L KK+
Sbjct: 540 IEGYCKAHNMDKAFELLEDMLHNGLVPDTYTYRPLISGLCSTGRVSAAKDFID-DLHKKN 598

Query: 241 VDRTRIC-NIYLRALCLIKNPTELLNVLVFMLQ--------------------------- 272
           +    +C +  L   C     TE L+    M+Q                           
Sbjct: 599 LKLNEMCYSALLHGYCGQGRLTEALSASCEMIQRGINMDLVCHAVLIDGAMKQQDMKRLF 658

Query: 273 --------TQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 324
                      +PD +   ++I+ + K G  +++ + L+ MV  K C P+ VT+T  + G
Sbjct: 659 GLLKKMYDQGLRPDSVIYTSMIDAYSKEGSFKKSGECLDLMVTEK-CFPNVVTYTAFMNG 717

Query: 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 384
           L  VG I  A +L ++ M     SP  VTY   L  L +   ++EA ++ + ML  G++A
Sbjct: 718 LCKVGEIDRAGHL-FEKMLTANISPNSVTYGCFLDSLTKEGNMKEATDLHHEMLK-GLLA 775

Query: 385 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFL 444
           ++ TY I+I G C+  +L EA +   ++       D   Y+ +I   CRSG +  AV   
Sbjct: 776 NTATYNILIRGFCKLGRLIEATKVLSEMTENGIFPDCITYSTIIYEHCRSGDVGAAVELW 835

Query: 445 YELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAV 492
             ++  GV P+ V +N++I G C      +A+++  +M   GL P  +
Sbjct: 836 DTMLRKGVEPDSVAFNLLIYGCCVNGALDKAFELRNDMLSRGLKPRQI 883



 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 133/512 (25%), Positives = 243/512 (47%), Gaps = 34/512 (6%)

Query: 26  VPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERA-- 83
           +P V + + +++G  R  +  + ++VFDE  + GV P+  T S ++R +   +D  RA  
Sbjct: 180 LPEVRTLSAILNGLLRIRKFILVWEVFDESVNAGVKPDPYTCSAVIRSLCELKDFCRAKE 239

Query: 84  -----------------NVLMFKLWE-----------RMKEEEDLSVNNAAFANLVDSLC 115
                            NVL+  L +           +   E+ L  +   +  LV   C
Sbjct: 240 KILWMESNRFDLSIVTYNVLIHGLCKGGGVLEALEVRKSLREKGLKEDVVTYCTLVLGFC 299

Query: 116 REGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLV 175
           R    ++   +  +M +   V  E A   ++D L + G    A  +V  + + G  P+L 
Sbjct: 300 RVQQFDDGICLMNEMVELGFVPTEAAVSGLVDGLRKKGNIDSAYDLVVKLGRFGFLPNLF 359

Query: 176 SYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLP-SEHTYKVLVEGLCGESDLEKARKVLQF 234
            YN++++ LCK G  +   +LL + +    LP ++ TY +L++  C    L+ A      
Sbjct: 360 VYNALINALCK-GEDLDKAELLYKNMHSMNLPLNDVTYSILIDSFCKRGMLDVAESYFGR 418

Query: 235 MLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGR 294
           M+     +     N  +   C   + +    +   M+    +P   T  T+I+G+CK  +
Sbjct: 419 MIEDGIRETIYPYNSLINGHCKFGDLSAAEFLYTKMINEGLEPTATTFTTLISGYCKDLQ 478

Query: 295 IEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTY 354
           +E+A K+  +M   K  AP   TFT +I+GL +   + EA + L+  M +R   P  VTY
Sbjct: 479 VEKAFKLYREM-NEKEIAPSVYTFTALIYGLCSTNEMAEA-SKLFDEMVERKIKPTEVTY 536

Query: 355 NAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVW 414
           N ++ G  +   +++A E+   ML  G+V D+ TY  +I GLC + ++  AK F DD+  
Sbjct: 537 NVMIEGYCKAHNMDKAFELLEDMLHNGLVPDTYTYRPLISGLCSTGRVSAAKDFIDDLHK 596

Query: 415 PSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKRE 474
            +   +   Y+A++ G C  G++ EA+    E++  G+  ++VC+ V+IDGA K    + 
Sbjct: 597 KNLKLNEMCYSALLHGYCGQGRLTEALSASCEMIQRGINMDLVCHAVLIDGAMKQQDMKR 656

Query: 475 AYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
            + +L++M   GL PD+V +  +   +   G+
Sbjct: 657 LFGLLKKMYDQGLRPDSVIYTSMIDAYSKEGS 688



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 125/537 (23%), Positives = 236/537 (43%), Gaps = 41/537 (7%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C + +  +   L  +M   G VP   + + L+ G  + G +D AY +  ++   G LPN
Sbjct: 298 FCRVQQFDDGICLMNEMVELGFVPTEAAVSGLVDGLRKKGNIDSAYDLVVKLGRFGFLPN 357

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
              Y+ L+  + +  D+++A  L++K    M    +L +N+  ++ L+DS C+ G ++  
Sbjct: 358 LFVYNALINALCKGEDLDKAE-LLYKNMHSM----NLPLNDVTYSILIDSFCKRGMLDVA 412

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
                 M +       +    +I+  C+ G    A  +   M   GL P+  ++ +++ G
Sbjct: 413 ESYFGRMIEDGIRETIYPYNSLINGHCKFGDLSAAEFLYTKMINEGLEPTATTFTTLISG 472

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK     +A++L  E  +    PS +T+  L+ GLC  +++ +A K+   M+ +K    
Sbjct: 473 YCKDLQVEKAFKLYREMNEKEIAPSVYTFTALIYGLCSTNEMAEASKLFDEMVERKIKPT 532

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               N+ +   C   N  +   +L  ML     PD  T   +I+G C  GR+  A   ++
Sbjct: 533 EVTYNVMIEGYCKAHNMDKAFELLEDMLHNGLVPDTYTYRPLISGLCSTGRVSAAKDFID 592

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           D+   K    + + ++ ++ G    GR+ EAL+   + M QRG +  +V +  ++ G  +
Sbjct: 593 DL-HKKNLKLNEMCYSALLHGYCGQGRLTEALSASCE-MIQRGINMDLVCHAVLIDGAMK 650

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
            + ++    +   M   G+  DS  Y  +ID   +     ++    D +V      +   
Sbjct: 651 QQDMKRLFGLLKKMYDQGLRPDSVIYTSMIDAYSKEGSFKKSGECLDLMVTEKCFPNVVT 710

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCY------------------------ 459
           Y A + GLC+ G+I  A H   +++ + ++PN V Y                        
Sbjct: 711 YTAFMNGLCKVGEIDRAGHLFEKMLTANISPNSVTYGCFLDSLTKEGNMKEATDLHHEML 770

Query: 460 ----------NVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
                     N++I G CKL    EA ++L EM +NG+ PD +T+  +   H   G+
Sbjct: 771 KGLLANTATYNILIRGFCKLGRLIEATKVLSEMTENGIFPDCITYSTIIYEHCRSGD 827



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 112/421 (26%), Positives = 202/421 (47%), Gaps = 21/421 (4%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC  + + EA KLF +M  R   P  V+Y  +I GYC+   MD A+++ ++M H G++P+
Sbjct: 508 LCSTNEMAEASKLFDEMVERKIKPTEVTYNVMIEGYCKAHNMDKAFELLEDMLHNGLVPD 567

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           + TY  L+ G+  T  V  A   +  L ++     +L +N   ++ L+   C +G + E 
Sbjct: 568 TYTYRPLISGLCSTGRVSAAKDFIDDLHKK-----NLKLNEMCYSALLHGYCGQGRLTEA 622

Query: 124 FRIAEDMPQGKSVNEEFAC-GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
              + +M Q + +N +  C   +ID   +         ++  M  +GL P  V Y S++ 
Sbjct: 623 LSASCEMIQ-RGINMDLVCHAVLIDGAMKQQDMKRLFGLLKKMYDQGLRPDSVIYTSMID 681

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
              K G   ++ + L+  +     P+  TY   + GLC   ++++A  + + ML+     
Sbjct: 682 AYSKEGSFKKSGECLDLMVTEKCFPNVVTYTAFMNGLCKVGEIDRAGHLFEKMLTANISP 741

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
            +     +L +L    N  E  ++   ML+     +  T N +I GFCK+GR+ EA KVL
Sbjct: 742 NSVTYGCFLDSLTKEGNMKEATDLHHEMLK-GLLANTATYNILIRGFCKLGRLIEATKVL 800

Query: 303 NDMVA-GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
           ++M   G F  PD +T++TII+     G +  A+  L+  M ++G  P  V +N ++ G 
Sbjct: 801 SEMTENGIF--PDCITYSTIIYEHCRSGDVGAAVE-LWDTMLRKGVEPDSVAFNLLIYGC 857

Query: 362 FRLRRVEEAKEVFNCMLGIGVVA---------DSTTYAIVIDGLCESNQLDEAKRFWDDI 412
                +++A E+ N ML  G+           D      ++ G C + ++D A R +  +
Sbjct: 858 CVNGALDKAFELRNDMLSRGLKPRQILQLQKRDLGVCNFLMHGGCVTGEVDTALRLYHSM 917

Query: 413 V 413
           +
Sbjct: 918 L 918



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/354 (23%), Positives = 177/354 (50%), Gaps = 4/354 (1%)

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
           ++ S  ++ R   A  V+ +M    L P + + ++I++GL +    +  +++ +E +  G
Sbjct: 154 LVHSYLQNTRVFDAVVVLRLMLGNTLLPEVRTLSAILNGLLRIRKFILVWEVFDESVNAG 213

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL 264
             P  +T   ++  LC   D  +A++ + +M S +        N+ +  LC      E L
Sbjct: 214 VKPDPYTCSAVIRSLCELKDFCRAKEKILWMESNRFDLSIVTYNVLIHGLCKGGGVLEAL 273

Query: 265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 324
            V   + +   + DV+T  T++ GFC++ + ++ + ++N+MV   F  P     + ++ G
Sbjct: 274 EVRKSLREKGLKEDVVTYCTLVLGFCRVQQFDDGICLMNEMVELGF-VPTEAAVSGLVDG 332

Query: 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 384
           L   G I  A +L+ + + + G+ P +  YNA++  L +   +++A+ ++  M  + +  
Sbjct: 333 LRKKGNIDSAYDLVVK-LGRFGFLPNLFVYNALINALCKGEDLDKAELLYKNMHSMNLPL 391

Query: 385 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFL 444
           +  TY+I+ID  C+   LD A+ ++  ++        Y Y ++I G C+ G +  A  FL
Sbjct: 392 NDVTYSILIDSFCKRGMLDVAESYFGRMIEDGIRETIYPYNSLINGHCKFGDL-SAAEFL 450

Query: 445 Y-ELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           Y ++++ G+ P    +  +I G CK     +A+++ REM +  + P   T+  L
Sbjct: 451 YTKMINEGLEPTATTFTTLISGYCKDLQVEKAFKLYREMNEKEIAPSVYTFTAL 504



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 107/241 (44%), Gaps = 4/241 (1%)

Query: 266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV-AGKFCAPDAVTFTTIIFG 324
           VL  ML     P+V TL+ ++NG  ++ +     +V ++ V AG    PD  T + +I  
Sbjct: 170 VLRLMLGNTLLPEVRTLSAILNGLLRIRKFILVWEVFDESVNAG--VKPDPYTCSAVIRS 227

Query: 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 384
           L  +     A   +  +   R +   IVTYN ++ GL +   V EA EV   +   G+  
Sbjct: 228 LCELKDFCRAKEKILWMESNR-FDLSIVTYNVLIHGLCKGGGVLEALEVRKSLREKGLKE 286

Query: 385 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFL 444
           D  TY  ++ G C   Q D+     +++V    +      + ++ GL + G I  A   +
Sbjct: 287 DVVTYCTLVLGFCRVQQFDDGICLMNEMVELGFVPTEAAVSGLVDGLRKKGNIDSAYDLV 346

Query: 445 YELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNR 504
            +L   G  PN+  YN +I+  CK     +A  + + M    L  + VT+ IL      R
Sbjct: 347 VKLGRFGFLPNLFVYNALINALCKGEDLDKAELLYKNMHSMNLPLNDVTYSILIDSFCKR 406

Query: 505 G 505
           G
Sbjct: 407 G 407


>gi|449438705|ref|XP_004137128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 124/471 (26%), Positives = 221/471 (46%), Gaps = 13/471 (2%)

Query: 30  VSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVL--- 86
           + +  LI   C     D A++ F  M+  GVLP   T + L+   L+    E A VL   
Sbjct: 152 IVFDYLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYAE 211

Query: 87  MFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMI 146
           MF+L  R+K       +   F  +++ LC+EG + +       M              ++
Sbjct: 212 MFRL--RIKS------SVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIV 263

Query: 147 DSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL 206
              C SGR   A  ++  M+++ + P   +Y S++ G+CK G    A ++ EE +Q G  
Sbjct: 264 HGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLR 323

Query: 207 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 266
           PS   Y  L++G C + +L+ A      ML K         N  + AL + +   E   +
Sbjct: 324 PSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECM 383

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
           +  + +    PD IT N +ING+C+    ++A  + ++M+A     P   T+T+++  L 
Sbjct: 384 IKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGI-KPTKKTYTSLLHVLS 442

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
              R++EA +L  ++  + G  P ++ +NA++ G      V+ A E+   M  + V  D 
Sbjct: 443 KKNRMKEADDLFKKITSE-GVLPDVIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDE 501

Query: 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE 446
            T+  ++ G C   +++EA+  +D++       D+  +  +I G  R G I +A     E
Sbjct: 502 VTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNE 561

Query: 447 LVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           ++D+G  P ++ YN ++ G CK      A ++L+EM   G+ PD  T+  L
Sbjct: 562 MLDTGFNPTVLTYNALVQGLCKNQEGDLAEELLKEMVSKGMTPDDTTYFTL 612



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 103/403 (25%), Positives = 213/403 (52%), Gaps = 7/403 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   ++ +A      M++ G  PN+V+Y T++HGYC +G ++ A  +   M+   + P+
Sbjct: 231 LCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPD 290

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           S TY  L+ G+ +   +E A+    K++E M  ++ L  +   +  L+D  C +G ++  
Sbjct: 291 SFTYGSLISGMCKQGRLEEAS----KIFEEMV-QKGLRPSAVIYNTLIDGFCNKGNLDMA 345

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
               ++M +            +I +L    R   A  ++  ++++G++P  ++YN +++G
Sbjct: 346 SAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILING 405

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            C+     +A+ L +E +  G  P++ TY  L+  L  ++ +++A  + + + S+  +  
Sbjct: 406 YCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPD 465

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
             + N  +   C   N      +L  M + +  PD +T NT++ G C+ G++EEA ++ +
Sbjct: 466 VIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFD 525

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           +M   +   PD ++F T+I G    G I++A  +  +++   G++P ++TYNA+++GL +
Sbjct: 526 EM-KRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEML-DTGFNPTVLTYNALVQGLCK 583

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
            +  + A+E+   M+  G+  D TTY  +I+G+ + N  DE K
Sbjct: 584 NQEGDLAEELLKEMVSKGMTPDDTTYFTLIEGIAKVNIPDENK 626



 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 119/464 (25%), Positives = 209/464 (45%), Gaps = 42/464 (9%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVP-----------------------------------NV 29
           C ++R  EA + F+ MK +G +P                                   +V
Sbjct: 162 CDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYAEMFRLRIKSSV 221

Query: 30  VSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFK 89
            ++  +I+  C+ G++  A      M   GV PN +TY+ +V G   +  VE A+ ++  
Sbjct: 222 YTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTT 281

Query: 90  LWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSL 149
           + +R K E D    +  + +L+  +C++G + E  +I E+M Q            +ID  
Sbjct: 282 M-KRQKIEPD----SFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGF 336

Query: 150 CRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSE 209
           C  G    AS     M K+G++P++ +YNS++H L        A  +++E  + G  P  
Sbjct: 337 CNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDA 396

Query: 210 HTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVF 269
            TY +L+ G C  ++ +KA  +   ML+       +     L  L       E  ++   
Sbjct: 397 ITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKK 456

Query: 270 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG 329
           +      PDVI  N +I+G C    ++ A ++L DM   K   PD VTF TI+ G    G
Sbjct: 457 ITSEGVLPDVIMFNALIDGHCSNSNVKGAFELLKDMDRMK-VPPDEVTFNTIMQGHCREG 515

Query: 330 RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTY 389
           +++EA  L +  M +RG  P  +++N ++ G  R   +++A  V N ML  G      TY
Sbjct: 516 KVEEAREL-FDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTY 574

Query: 390 AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR 433
             ++ GLC++ + D A+    ++V      D+  Y  +I+G+ +
Sbjct: 575 NALVQGLCKNQEGDLAEELLKEMVSKGMTPDDTTYFTLIEGIAK 618



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 83/334 (24%), Positives = 157/334 (47%), Gaps = 8/334 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           +C   R+ EA K+F +M  +G  P+ V Y TLI G+C  G +D+A    DEM   G+ P 
Sbjct: 301 MCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPT 360

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             TY+ L+  +   +  + A  ++ ++     +E+ +S +   +  L++  CR     + 
Sbjct: 361 MSTYNSLIHALFMEQRTDEAECMIKEI-----QEKGISPDAITYNILINGYCRCANAKKA 415

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           F + ++M        +     ++  L +  R   A  +   +   G+ P ++ +N+++ G
Sbjct: 416 FLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDVIMFNALIDG 475

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            C +     A++LL++  +    P E T+  +++G C E  +E+AR++   M  ++ +  
Sbjct: 476 HCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEM-KRRGIKP 534

Query: 244 TRIC-NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
             I  N  +       +  +   V   ML T   P V+T N ++ G CK    + A ++L
Sbjct: 535 DHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGDLAEELL 594

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALN 336
            +MV+ K   PD  T+ T+I G+  V    E  N
Sbjct: 595 KEMVS-KGMTPDDTTYFTLIEGIAKVNIPDENKN 627



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 88/367 (23%), Positives = 165/367 (44%), Gaps = 20/367 (5%)

Query: 144 HMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI-VHGLCK---------HGGCMRA 193
           H ++   RS + H   +V     +  LTPSL+S   + +H   +         H     A
Sbjct: 43  HFLEQSARSSQWHFIKQV-----ESSLTPSLISQTLLNLHESPQVVLDFLNHFHHKLSDA 97

Query: 194 YQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD---VDRTRICNIY 250
             L    +    LPS      L++   G       R++ +F+ + +D      + + +  
Sbjct: 98  RTLCLAIVIVARLPSPKPALHLLKQALGGGTTNSIREIFEFLAASRDRLGFKSSIVFDYL 157

Query: 251 LRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKF 310
           +++ C +    E       M +    P + T N++++ F K+ R E A  +  +M   + 
Sbjct: 158 IKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYAEMFRLRI 217

Query: 311 CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEA 370
            +    TF  +I  L   G++++A + +   M   G  P IVTYN ++ G     RVE A
Sbjct: 218 KS-SVYTFNIMINVLCKEGKLKKAKDFVGH-METSGVKPNIVTYNTIVHGYCSSGRVEAA 275

Query: 371 KEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKG 430
             +   M    +  DS TY  +I G+C+  +L+EA + ++++V         +Y  +I G
Sbjct: 276 DAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDG 335

Query: 431 LCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD 490
            C  G +  A  +  E++  G++P +  YN +I          EA  +++E+++ G++PD
Sbjct: 336 FCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPD 395

Query: 491 AVTWRIL 497
           A+T+ IL
Sbjct: 396 AITYNIL 402



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/186 (20%), Positives = 77/186 (41%), Gaps = 40/186 (21%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C  S V  A +L  DM      P+ V++ T++ G+CR G+++ A ++FDEM+  G+
Sbjct: 473 IDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGI 532

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ ++++ L+ G                                          R G +
Sbjct: 533 KPDHISFNTLISGY----------------------------------------SRRGDI 552

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            + FR+  +M              ++  LC++     A  ++  M  +G+TP   +Y ++
Sbjct: 553 KDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGDLAEELLKEMVSKGMTPDDTTYFTL 612

Query: 181 VHGLCK 186
           + G+ K
Sbjct: 613 IEGIAK 618


>gi|357498963|ref|XP_003619770.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494785|gb|AES75988.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 582

 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 122/469 (26%), Positives = 235/469 (50%), Gaps = 9/469 (1%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M+  G V +  ++  LI+ + + G   +++ VF ++   G  PN++T++ L++G+     
Sbjct: 96  MELNGIVSDFFTFNILINCFSQLGLNSLSFSVFGKILKKGFDPNAITFNTLIKGLCLKGH 155

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
           + +A     K+       +   ++  ++  L++ LC+ G +    ++ + +  GK V   
Sbjct: 156 IHQALNFHDKVVA-----QGFHLDQVSYGTLINGLCKVGRITAALQLLKRV-DGKLVQPN 209

Query: 140 FACGHMI-DSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLE 198
               +MI D++C++   + A  +   M  + ++P   + NS+++G C  G    A  LL 
Sbjct: 210 AVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRISPDDFTCNSLIYGFCIMGQLKEAVGLLH 269

Query: 199 EGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIK 258
           + I     P  +T+ +LV+  C E  +++A+ +L   + K  +      N  +   CL+K
Sbjct: 270 KMILENINPRMYTFSILVDAFCKEGKVKEAKMMLGVTMKKDIILDVVTYNSLMDGYCLVK 329

Query: 259 NPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTF 318
              +  ++   M       +V +  T+ING CK+  ++EA+ +  +M   K   P+ VT+
Sbjct: 330 EINKAKDIFDSMASRGVIANVQSYTTMINGLCKIKMVDEAVNLFEEMRCRKII-PNVVTY 388

Query: 319 TTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCML 378
            ++I GL  +G+I   L L+ + M  RG  P I+TYN++L  L +   V++A  +   + 
Sbjct: 389 NSLIDGLGKLGKISCVLKLVDE-MHDRGQPPNIITYNSILDALCKNHHVDKAIALLTNLK 447

Query: 379 GIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIH 438
             G+  D  TY ++I GLC+S +L++A++ ++D++      D Y Y  MI+G C  G   
Sbjct: 448 DQGIRPDMYTYTVLIKGLCQSGKLEDAQKVFEDLLVKGYNLDVYTYTVMIQGFCVKGLFD 507

Query: 439 EAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
            A+  L ++ D+G  PN   Y +VI    +      A ++LREM   GL
Sbjct: 508 AALALLSKMEDNGCIPNAKTYEIVILSLFEKDENDMAEKLLREMIARGL 556



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 100/393 (25%), Positives = 202/393 (51%), Gaps = 2/393 (0%)

Query: 107 FANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMR 166
           F  ++ SL +  + +    + + M     V++ F    +I+   + G N  +  V   + 
Sbjct: 73  FNKILSSLVKAKHHSTALSLHQQMELNGIVSDFFTFNILINCFSQLGLNSLSFSVFGKIL 132

Query: 167 KRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLE 226
           K+G  P+ +++N+++ GLC  G   +A    ++ +  G+   + +Y  L+ GLC    + 
Sbjct: 133 KKGFDPNAITFNTLIKGLCLKGHIHQALNFHDKVVAQGFHLDQVSYGTLINGLCKVGRIT 192

Query: 227 KARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVI 286
            A ++L+ +  K       + N+ +  +C  K   +  ++   M+  +  PD  T N++I
Sbjct: 193 AALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRISPDDFTCNSLI 252

Query: 287 NGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
            GFC MG+++EA+ +L+ M+      P   TF+ ++      G+++EA  ++  V  ++ 
Sbjct: 253 YGFCIMGQLKEAVGLLHKMILENI-NPRMYTFSILVDAFCKEGKVKEA-KMMLGVTMKKD 310

Query: 347 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
               +VTYN+++ G   ++ + +AK++F+ M   GV+A+  +Y  +I+GLC+   +DEA 
Sbjct: 311 IILDVVTYNSLMDGYCLVKEINKAKDIFDSMASRGVIANVQSYTTMINGLCKIKMVDEAV 370

Query: 407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466
             ++++     I +   Y ++I GL + GKI   +  + E+ D G  PNI+ YN ++D  
Sbjct: 371 NLFEEMRCRKIIPNVVTYNSLIDGLGKLGKISCVLKLVDEMHDRGQPPNIITYNSILDAL 430

Query: 467 CKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
           CK     +A  +L  ++  G+ PD  T+ +L K
Sbjct: 431 CKNHHVDKAIALLTNLKDQGIRPDMYTYTVLIK 463



 Score =  164 bits (415), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 114/476 (23%), Positives = 231/476 (48%), Gaps = 9/476 (1%)

Query: 23  RGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVER 82
           +   P ++ +  ++    +      A  +  +M   G++ +  T+++L+    +      
Sbjct: 64  KNPTPPIIQFNKILSSLVKAKHHSTALSLHQQMELNGIVSDFFTFNILINCFSQLG---- 119

Query: 83  ANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDM-PQGKSVNEEFA 141
            N L F ++ ++ ++     N   F  L+  LC +G++++     + +  QG  + ++ +
Sbjct: 120 LNSLSFSVFGKILKK-GFDPNAITFNTLIKGLCLKGHIHQALNFHDKVVAQGFHL-DQVS 177

Query: 142 CGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGI 201
            G +I+ LC+ GR   A +++  +  + + P+ V YN I+  +CK      A+ L  + +
Sbjct: 178 YGTLINGLCKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMV 237

Query: 202 QFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPT 261
                P + T   L+ G C    L++A  +L  M+ +    R    +I + A C      
Sbjct: 238 AKRISPDDFTCNSLIYGFCIMGQLKEAVGLLHKMILENINPRMYTFSILVDAFCKEGKVK 297

Query: 262 ELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTI 321
           E   +L   ++     DV+T N++++G+C +  I +A  + + M A +    +  ++TT+
Sbjct: 298 EAKMMLGVTMKKDIILDVVTYNSLMDGYCLVKEINKAKDIFDSM-ASRGVIANVQSYTTM 356

Query: 322 IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG 381
           I GL  +  + EA+NL ++ M  R   P +VTYN+++ GL +L ++    ++ + M   G
Sbjct: 357 INGLCKIKMVDEAVNL-FEEMRCRKIIPNVVTYNSLIDGLGKLGKISCVLKLVDEMHDRG 415

Query: 382 VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAV 441
              +  TY  ++D LC+++ +D+A     ++       D Y Y  +IKGLC+SGK+ +A 
Sbjct: 416 QPPNIITYNSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTVLIKGLCQSGKLEDAQ 475

Query: 442 HFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
               +L+  G   ++  Y V+I G C   +   A  +L +M  NG  P+A T+ I+
Sbjct: 476 KVFEDLLVKGYNLDVYTYTVMIQGFCVKGLFDAALALLSKMEDNGCIPNAKTYEIV 531



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 90/376 (23%), Positives = 155/376 (41%), Gaps = 67/376 (17%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D +C    V +A  L+  M ++   P+  +  +LI+G+C  G++  A  +  +M    +
Sbjct: 217 IDNMCKAKLVNDAFDLYSQMVAKRISPDDFTCNSLIYGFCIMGQLKEAVGLLHKMILENI 276

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLM---------------------FKLWERMKEEED 99
            P   T+S+LV    +   V+ A +++                     + L + + + +D
Sbjct: 277 NPRMYTFSILVDAFCKEGKVKEAKMMLGVTMKKDIILDVVTYNSLMDGYCLVKEINKAKD 336

Query: 100 LS---------VNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC 150
           +           N  ++  +++ LC+   V+E   + E+M   K +        +ID L 
Sbjct: 337 IFDSMASRGVIANVQSYTTMINGLCKIKMVDEAVNLFEEMRCRKIIPNVVTYNSLIDGLG 396

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
           + G+     ++V  M  RG  P++++YNSI+  LCK+    +A  LL      G  P  +
Sbjct: 397 KLGKISCVLKLVDEMHDRGQPPNIITYNSILDALCKNHHVDKAIALLTNLKDQGIRPDMY 456

Query: 211 TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM 270
           TY VL++GLC    LE A+KV + +L K                                
Sbjct: 457 TYTVLIKGLCQSGKLEDAQKVFEDLLVKG------------------------------- 485

Query: 271 LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR 330
                  DV T   +I GFC  G  + AL +L+ M     C P+A T+  +I  L     
Sbjct: 486 ----YNLDVYTYTVMIQGFCVKGLFDAALALLSKM-EDNGCIPNAKTYEIVILSLFEKDE 540

Query: 331 IQEALNLLYQVMPQRG 346
              A  LL + M  RG
Sbjct: 541 NDMAEKLLRE-MIARG 555



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 131/253 (51%), Gaps = 7/253 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           MD  C +  + +A  +F  M SRG + NV SYTT+I+G C+   +D A  +F+EMR   +
Sbjct: 322 MDGYCLVKEINKAKDIFDSMASRGVIANVQSYTTMINGLCKIKMVDEAVNLFEEMRCRKI 381

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +PN +TY+ L+ G+ +   +     L+ ++ +R +    ++ N     +++D+LC+  +V
Sbjct: 382 IPNVVTYNSLIDGLGKLGKISCVLKLVDEMHDRGQPPNIITYN-----SILDALCKNHHV 436

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           ++   +  ++       + +    +I  LC+SG+   A +V   +  +G    + +Y  +
Sbjct: 437 DKAIALLTNLKDQGIRPDMYTYTVLIKGLCQSGKLEDAQKVFEDLLVKGYNLDVYTYTVM 496

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G C  G    A  LL +    G +P+  TY++++  L  + + + A K+L+ M+++  
Sbjct: 497 IQGFCVKGLFDAALALLSKMEDNGCIPNAKTYEIVILSLFEKDENDMAEKLLREMIARGL 556

Query: 241 VDRTRICNIYLRA 253
           +D      IYL +
Sbjct: 557 LDEKSY--IYLAS 567


>gi|358347566|ref|XP_003637827.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503762|gb|AES84965.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 639

 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 122/467 (26%), Positives = 237/467 (50%), Gaps = 14/467 (2%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M+ +G  P + ++  LI+ +    +++ A+ +  ++   G  P+++T + L+RG+     
Sbjct: 79  MELKGIQPEMFTFNILINCFSHLCQLNFAFSMVAKILKLGYQPDTVTVNTLLRGLCLNGK 138

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
           V+ A        + +  +    ++  ++  L++ LC+ G      ++   +     V  +
Sbjct: 139 VKEA----LNFHDHVIRKR-FHLDQVSYGTLINGLCKSGETRAALQLLRKIEGLLLVRPD 193

Query: 140 -FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLE 198
                 +IDS C+      A  +   M  + + P++V++NS+++G C  G    A  LL 
Sbjct: 194 VIMYTAIIDSFCKDKLVIDAYDLYSEMIVKKIYPNVVTFNSLIYGFCIVGQLKEAVGLLN 253

Query: 199 EGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIK 258
           E       P+ +T+ +L++GLC E +++KA  VL  M+ +            +    L+K
Sbjct: 254 EMSLNNVNPNVYTFNILIDGLCKEGEVKKATSVLSVMIKQGVEPNVVTYTSLMDGYFLVK 313

Query: 259 NPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTF 318
              +  +V   +      P+V + + +ING CK   ++EA+K+  +M   K   P+ VT+
Sbjct: 314 EVNKAKHVFNTISLRGVTPNVHSYSVMINGLCKNKMVDEAVKLFKEMHL-KNMTPNTVTY 372

Query: 319 TTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCML 378
           +++I GL   GRI +  +L+ ++   RG    I+TYN++L GL +  +V++A  +   M 
Sbjct: 373 SSLIDGLCKSGRISDVWDLIDEI-NNRGQPANIITYNSLLNGLCKNHQVDKAIALLTKMK 431

Query: 379 GIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV---WPSNIHDNYVYAAMIKGLCRSG 435
             G+  D +TY  ++DGLC++ +L +A+R + D++   +P NI    +Y  MI GLC+ G
Sbjct: 432 DEGIQPDMSTYTTLVDGLCKNGRLKDAQRIYQDLLCKGYPLNIR---MYTVMINGLCKEG 488

Query: 436 KIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
              EA+  L ++ D+G  P+ V Y  +I    K +   +A ++LREM
Sbjct: 489 FFDEALSLLSQMEDNGCMPDAVTYETLISALFKNNKNGKAVKLLREM 535



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 109/395 (27%), Positives = 207/395 (52%), Gaps = 9/395 (2%)

Query: 107 FANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMR 166
           F  ++ SL +  +       ++ M       E F    +I+      + + A  +V  + 
Sbjct: 56  FNKILSSLVKMNHFKIAISFSQQMELKGIQPEMFTFNILINCFSHLCQLNFAFSMVAKIL 115

Query: 167 KRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLC--GES- 223
           K G  P  V+ N+++ GLC +G    A    +  I+  +   + +Y  L+ GLC  GE+ 
Sbjct: 116 KLGYQPDTVTVNTLLRGLCLNGKVKEALNFHDHVIRKRFHLDQVSYGTLINGLCKSGETR 175

Query: 224 -DLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITL 282
             L+  RK+   +L + DV    +    + + C  K   +  ++   M+  +  P+V+T 
Sbjct: 176 AALQLLRKIEGLLLVRPDV---IMYTAIIDSFCKDKLVIDAYDLYSEMIVKKIYPNVVTF 232

Query: 283 NTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVM 342
           N++I GFC +G+++EA+ +LN+M       P+  TF  +I GL   G +++A ++L  VM
Sbjct: 233 NSLIYGFCIVGQLKEAVGLLNEMSLNN-VNPNVYTFNILIDGLCKEGEVKKATSVL-SVM 290

Query: 343 PQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQL 402
            ++G  P +VTY +++ G F ++ V +AK VFN +   GV  +  +Y+++I+GLC++  +
Sbjct: 291 IKQGVEPNVVTYTSLMDGYFLVKEVNKAKHVFNTISLRGVTPNVHSYSVMINGLCKNKMV 350

Query: 403 DEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVV 462
           DEA + + ++   +   +   Y+++I GLC+SG+I +    + E+ + G   NI+ YN +
Sbjct: 351 DEAVKLFKEMHLKNMTPNTVTYSSLIDGLCKSGRISDVWDLIDEINNRGQPANIITYNSL 410

Query: 463 IDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           ++G CK     +A  +L +M+  G+ PD  T+  L
Sbjct: 411 LNGLCKNHQVDKAIALLTKMKDEGIQPDMSTYTTL 445



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 118/482 (24%), Positives = 231/482 (47%), Gaps = 22/482 (4%)

Query: 24  GHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERA 83
            H P +  +  ++    +     +A     +M   G+ P   T+++L+        +  A
Sbjct: 48  NHTPPIFEFNKILSSLVKMNHFKIAISFSQQMELKGIQPEMFTFNILINCFSHLCQLNFA 107

Query: 84  NVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACG 143
             ++ K+ +   + + ++VN      L+  LC  G V E     + + + +   ++ + G
Sbjct: 108 FSMVAKILKLGYQPDTVTVNT-----LLRGLCLNGKVKEALNFHDHVIRKRFHLDQVSYG 162

Query: 144 HMIDSLCRSGRNHGASRVVYVMRK-RGLT---PSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
            +I+ LC+SG    A   + ++RK  GL    P ++ Y +I+   CK    + AY L  E
Sbjct: 163 TLINGLCKSGETRAA---LQLLRKIEGLLLVRPDVIMYTAIIDSFCKDKLVIDAYDLYSE 219

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
            I     P+  T+  L+ G C    L++A  +L  M            NI +  LC    
Sbjct: 220 MIVKKIYPNVVTFNSLIYGFCIVGQLKEAVGLLNEMSLNNVNPNVYTFNILIDGLCKEGE 279

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
             +  +VL  M++   +P+V+T  ++++G+  +  + +A  V N  ++ +   P+  +++
Sbjct: 280 VKKATSVLSVMIKQGVEPNVVTYTSLMDGYFLVKEVNKAKHVFN-TISLRGVTPNVHSYS 338

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
            +I GL     + EA+ L ++ M  +  +P  VTY++++ GL +  R+ +  ++ + +  
Sbjct: 339 VMINGLCKNKMVDEAVKL-FKEMHLKNMTPNTVTYSSLIDGLCKSGRISDVWDLIDEINN 397

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEA----KRFWDDIVWPSNIHDNYVYAAMIKGLCRSG 435
            G  A+  TY  +++GLC+++Q+D+A     +  D+ + P    D   Y  ++ GLC++G
Sbjct: 398 RGQPANIITYNSLLNGLCKNHQVDKAIALLTKMKDEGIQP----DMSTYTTLVDGLCKNG 453

Query: 436 KIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWR 495
           ++ +A     +L+  G   NI  Y V+I+G CK     EA  +L +M  NG  PDAVT+ 
Sbjct: 454 RLKDAQRIYQDLLCKGYPLNIRMYTVMINGLCKEGFFDEALSLLSQMEDNGCMPDAVTYE 513

Query: 496 IL 497
            L
Sbjct: 514 TL 515



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 109/416 (26%), Positives = 209/416 (50%), Gaps = 18/416 (4%)

Query: 4   LCGLSRVGEAHKLFFD--MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVL 61
           LC   +V EA   F D  ++ R H+ + VSY TLI+G C++GE   A ++  ++   G+L
Sbjct: 133 LCLNGKVKEALN-FHDHVIRKRFHL-DQVSYGTLINGLCKSGETRAALQLLRKIE--GLL 188

Query: 62  ---PNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREG 118
              P+ + Y+ ++    + + V  A    + L+  M  ++ +  N   F +L+   C  G
Sbjct: 189 LVRPDVIMYTAIIDSFCKDKLVIDA----YDLYSEMIVKK-IYPNVVTFNSLIYGFCIVG 243

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
            + E   +  +M         +    +ID LC+ G    A+ V+ VM K+G+ P++V+Y 
Sbjct: 244 QLKEAVGLLNEMSLNNVNPNVYTFNILIDGLCKEGEVKKATSVLSVMIKQGVEPNVVTYT 303

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
           S++ G        +A  +       G  P+ H+Y V++ GLC    +++A K+ + M  K
Sbjct: 304 SLMDGYFLVKEVNKAKHVFNTISLRGVTPNVHSYSVMINGLCKNKMVDEAVKLFKEMHLK 363

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQP-DVITLNTVINGFCKMGRIEE 297
                T   +  +  LC     +++ + L+  +  + QP ++IT N+++NG CK  ++++
Sbjct: 364 NMTPNTVTYSSLIDGLCKSGRISDVWD-LIDEINNRGQPANIITYNSLLNGLCKNHQVDK 422

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           A+ +L  M   +   PD  T+TT++ GL   GR+++A   +YQ +  +GY   I  Y  +
Sbjct: 423 AIALLTKM-KDEGIQPDMSTYTTLVDGLCKNGRLKDA-QRIYQDLLCKGYPLNIRMYTVM 480

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413
           + GL +    +EA  + + M   G + D+ TY  +I  L ++N+  +A +   +++
Sbjct: 481 INGLCKEGFFDEALSLLSQMEDNGCMPDAVTYETLISALFKNNKNGKAVKLLREMI 536



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 86/304 (28%), Positives = 151/304 (49%), Gaps = 5/304 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C + ++ EA  L  +M      PNV ++  LI G C+ GE+  A  V   M   GV PN
Sbjct: 239 FCIVGQLKEAVGLLNEMSLNNVNPNVYTFNILIDGLCKEGEVKKATSVLSVMIKQGVEPN 298

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY+ L+ G    ++V +A  +   +  R      ++ N  +++ +++ LC+   V+E 
Sbjct: 299 VVTYTSLMDGYFLVKEVNKAKHVFNTISLR-----GVTPNVHSYSVMINGLCKNKMVDEA 353

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            ++ ++M              +ID LC+SGR      ++  +  RG   ++++YNS+++G
Sbjct: 354 VKLFKEMHLKNMTPNTVTYSSLIDGLCKSGRISDVWDLIDEINNRGQPANIITYNSLLNG 413

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LCK+    +A  LL +    G  P   TY  LV+GLC    L+ A+++ Q +L K     
Sbjct: 414 LCKNHQVDKAIALLTKMKDEGIQPDMSTYTTLVDGLCKNGRLKDAQRIYQDLLCKGYPLN 473

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
            R+  + +  LC      E L++L  M    C PD +T  T+I+   K  +  +A+K+L 
Sbjct: 474 IRMYTVMINGLCKEGFFDEALSLLSQMEDNGCMPDAVTYETLISALFKNNKNGKAVKLLR 533

Query: 304 DMVA 307
           +M+A
Sbjct: 534 EMIA 537



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 118/241 (48%), Gaps = 9/241 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           MD    +  V +A  +F  +  RG  PNV SY+ +I+G C+   +D A K+F EM    +
Sbjct: 306 MDGYFLVKEVNKAKHVFNTISLRGVTPNVHSYSVMINGLCKNKMVDEAVKLFKEMHLKNM 365

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEED--LSVNNAAFANLVDSLCREG 118
            PN++TYS L+ G+ ++  +         +W+ + E  +     N   + +L++ LC+  
Sbjct: 366 TPNTVTYSSLIDGLCKSGRIS-------DVWDLIDEINNRGQPANIITYNSLLNGLCKNH 418

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
            V++   +   M       +      ++D LC++GR   A R+   +  +G   ++  Y 
Sbjct: 419 QVDKAIALLTKMKDEGIQPDMSTYTTLVDGLCKNGRLKDAQRIYQDLLCKGYPLNIRMYT 478

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
            +++GLCK G    A  LL +    G +P   TY+ L+  L   +   KA K+L+ M+++
Sbjct: 479 VMINGLCKEGFFDEALSLLSQMEDNGCMPDAVTYETLISALFKNNKNGKAVKLLREMIAR 538

Query: 239 K 239
           +
Sbjct: 539 E 539


>gi|242089061|ref|XP_002440363.1| hypothetical protein SORBIDRAFT_09g030360 [Sorghum bicolor]
 gi|241945648|gb|EES18793.1| hypothetical protein SORBIDRAFT_09g030360 [Sorghum bicolor]
          Length = 715

 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 134/537 (24%), Positives = 256/537 (47%), Gaps = 53/537 (9%)

Query: 27  PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVL 86
           PNV+SY  +I+G  + GE+D AY +F EM   G  PN +TY+ ++ G+ + + +++A  +
Sbjct: 137 PNVLSYNMVINGLFKEGEVDKAYTLFHEMLGQGFPPNIVTYNSVIDGLCKAQAMDKAEAV 196

Query: 87  MFKLWERMKEEE-----------DLSVNNAAFANLVDSLCREGYVNEVFRIAEDM----- 130
           + +++++ + EE            L  +   ++ L+D  C+ G   E   I + M     
Sbjct: 197 LQQMFDKGQLEEAVRLLKKMSGGGLQPDVVTYSLLIDYYCKIGRCTEARNIFDSMVRRGQ 256

Query: 131 -PQG---KSVNEEFAC----------------------GHMIDSLCRS-GRNHGASRVVY 163
            P     +++   +A                        H+ + L R+  +N    + + 
Sbjct: 257 NPDAYTYRTLLHGYATKGALVDMHDLLALMIQDGIPLEDHVFNILIRAYAKNETLDKAMT 316

Query: 164 V---MRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLC 220
               MR++G +P++V+Y +++  LCK G    A     + +  G  P   T+  L+ GLC
Sbjct: 317 AFIEMRQKGFSPNVVTYTTVIDILCKAGRVEDAVSHFSQMVSEGLSPDIITFTSLIHGLC 376

Query: 221 GESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVI 280
              + +K  K+   M+++         N  + +LC      E  +    ++    +PDV+
Sbjct: 377 TIGEWKKVEKLSFEMINRGIHPNAIFLNTIMDSLCKEGRVLEAHDFFDQIIHVGVKPDVV 436

Query: 281 TLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQ 340
           +   +I+G+C  G+++E++K+L  MV+     PD VT++ ++ G    GR+ +AL L Y+
Sbjct: 437 SYTILIDGYCLDGKMDESIKLLGRMVSIGL-RPDNVTYSALLNGYCKNGRVDDALAL-YR 494

Query: 341 VMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN 400
            M  +   P  +TYN +L GLF   RV  A+E +  ++  G+     TY IV+ GLCE++
Sbjct: 495 EMFSKDVKPNAITYNIILHGLFHAGRVVAAREFYMKIVDSGIQLGINTYNIVLGGLCENS 554

Query: 401 QLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYN 460
            +DEA R +  +       +   +  MI GL + G+I +A      ++ SG+ P+ + Y 
Sbjct: 555 FVDEALRMFQGLRSKEFQLEVRTFNIMIVGLLKVGRIGDAKSLFSAILPSGLVPDAIIYG 614

Query: 461 VVIDGACKLSMKREAYQILREMRKNGLNP-----DAVTWRILDKLHGNRGNDFGLRI 512
           ++I    +  +  E+ ++   M KNG        +A+  ++L+K    R   +  +I
Sbjct: 615 LMIQSHIEEGLLEESDELFLSMEKNGCTANSRTLNAIVRKLLEKGDVRRAGTYLTKI 671



 Score =  164 bits (416), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 119/497 (23%), Positives = 218/497 (43%), Gaps = 42/497 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C + R  EA  +F  M  RG  P+  +Y TL+HGY   G +   + +   M   G+
Sbjct: 232 IDYYCKIGRCTEARNIFDSMVRRGQNPDAYTYRTLLHGYATKGALVDMHDLLALMIQDGI 291

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
                 +++L+R   +   +++A     ++ ++       S N   +  ++D LC+ G V
Sbjct: 292 PLEDHVFNILIRAYAKNETLDKAMTAFIEMRQK-----GFSPNVVTYTTVIDILCKAGRV 346

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +       M       +      +I  LC  G      ++ + M  RG+ P+ +  N+I
Sbjct: 347 EDAVSHFSQMVSEGLSPDIITFTSLIHGLCTIGEWKKVEKLSFEMINRGIHPNAIFLNTI 406

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +  LCK G  + A+   ++ I  G  P   +Y +L++G C +  ++++ K+L        
Sbjct: 407 MDSLCKEGRVLEAHDFFDQIIHVGVKPDVVSYTILIDGYCLDGKMDESIKLL-------- 458

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
               R+ +I LR                        PD +T + ++NG+CK GR+++AL 
Sbjct: 459 ---GRMVSIGLR------------------------PDNVTYSALLNGYCKNGRVDDALA 491

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +  +M + K   P+A+T+  I+ GL + GR+  A    Y  +   G   GI TYN VL G
Sbjct: 492 LYREMFS-KDVKPNAITYNIILHGLFHAGRVVAAREF-YMKIVDSGIQLGINTYNIVLGG 549

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L     V+EA  +F  +       +  T+ I+I GL +  ++ +AK  +  I+    + D
Sbjct: 550 LCENSFVDEALRMFQGLRSKEFQLEVRTFNIMIVGLLKVGRIGDAKSLFSAILPSGLVPD 609

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
             +Y  MI+     G + E+      +  +G T N    N ++    +    R A   L 
Sbjct: 610 AIIYGLMIQSHIEEGLLEESDELFLSMEKNGCTANSRTLNAIVRKLLEKGDVRRAGTYLT 669

Query: 481 EMRKNGLNPDAVTWRIL 497
           ++ +   + +A T  +L
Sbjct: 670 KIDEKEYSVEASTAVLL 686



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 107/380 (28%), Positives = 182/380 (47%), Gaps = 58/380 (15%)

Query: 155 NHGASRVVYVMRKRGLT--PSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTY 212
           + G+   V++M   G    P+++SYN +++GL K G   +AY L  E +  G+ P+  TY
Sbjct: 118 SRGSRAAVHMMADDGYNCPPNVLSYNMVINGLFKEGEVDKAYTLFHEMLGQGFPPNIVTY 177

Query: 213 KVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQ 272
             +++GLC    ++KA  VLQ M  K  ++                   E + +L  M  
Sbjct: 178 NSVIDGLCKAQAMDKAEAVLQQMFDKGQLE-------------------EAVRLLKKMSG 218

Query: 273 TQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQ 332
              QPDV+T + +I+ +CK+GR  EA  + + MV  +   PDA T+ T++ G    G + 
Sbjct: 219 GGLQPDVVTYSLLIDYYCKIGRCTEARNIFDSMVR-RGQNPDAYTYRTLLHGYATKGALV 277

Query: 333 EALNLL----------------------------------YQVMPQRGYSPGIVTYNAVL 358
           +  +LL                                  +  M Q+G+SP +VTY  V+
Sbjct: 278 DMHDLLALMIQDGIPLEDHVFNILIRAYAKNETLDKAMTAFIEMRQKGFSPNVVTYTTVI 337

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
             L +  RVE+A   F+ M+  G+  D  T+  +I GLC   +  + ++   +++    I
Sbjct: 338 DILCKAGRVEDAVSHFSQMVSEGLSPDIITFTSLIHGLCTIGEWKKVEKLSFEMI-NRGI 396

Query: 419 HDNYVYA-AMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQ 477
           H N ++   ++  LC+ G++ EA  F  +++  GV P++V Y ++IDG C      E+ +
Sbjct: 397 HPNAIFLNTIMDSLCKEGRVLEAHDFFDQIIHVGVKPDVVSYTILIDGYCLDGKMDESIK 456

Query: 478 ILREMRKNGLNPDAVTWRIL 497
           +L  M   GL PD VT+  L
Sbjct: 457 LLGRMVSIGLRPDNVTYSAL 476



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 67/200 (33%), Positives = 103/200 (51%), Gaps = 30/200 (15%)

Query: 312 APDAVTFTTIIFGLLNVGRIQEALN-------LLYQVMPQRGYS--PGIVTYNAVLRGLF 362
           A DA TF  +I    NVG +  AL            +M   GY+  P +++YN V+ GLF
Sbjct: 91  ATDACTFGILIRCFCNVGLLDFALEEESRGSRAAVHMMADDGYNCPPNVLSYNMVINGLF 150

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
           +   V++A  +F+ MLG G   +  TY  VIDGLC++  +D+A+                
Sbjct: 151 KEGEVDKAYTLFHEMLGQGFPPNIVTYNSVIDGLCKAQAMDKAE---------------- 194

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
              A+++ +   G++ EAV  L ++   G+ P++V Y+++ID  CK+    EA  I   M
Sbjct: 195 ---AVLQQMFDKGQLEEAVRLLKKMSGGGLQPDVVTYSLLIDYYCKIGRCTEARNIFDSM 251

Query: 483 RKNGLNPDAVTWRILDKLHG 502
            + G NPDA T+R L  LHG
Sbjct: 252 VRRGQNPDAYTYRTL--LHG 269


>gi|115476328|ref|NP_001061760.1| Os08g0402600 [Oryza sativa Japonica Group]
 gi|113623729|dbj|BAF23674.1| Os08g0402600, partial [Oryza sativa Japonica Group]
          Length = 554

 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 121/488 (24%), Positives = 235/488 (48%), Gaps = 19/488 (3%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           R G+A ++F +M  R  +PN ++Y T+I G+ + G+++  +++ D+M   G+ PN++TY+
Sbjct: 78  RGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYN 137

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
           VL+ G+ R   +   + L+ ++       + +  +   ++ L D L R G    +  +  
Sbjct: 138 VLLSGLCRAGRMGETSALLDEM-----ASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFG 192

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
              +      ++ C  +++ LC+ G+   A  V+  +   GL P+ V YN++++G C+ G
Sbjct: 193 KYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTG 252

Query: 189 GCMRAYQLLEEGIQFGYLPSEH------TYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
               A+        FG + S H      TY  L+ GLC    +  A+ +L  M       
Sbjct: 253 ELEGAFS------TFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNP 306

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
                N  + A        +   VL  M +   +P+V++  +++N FCK G+I EA+ +L
Sbjct: 307 TVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAIL 366

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
           +DM   K   P+A  +  II   +  G   +A  +L + M   G SP IVTYN +++GL 
Sbjct: 367 DDMFH-KDVLPNAQVYNAIIDAYVEHGPNDQAF-ILVEKMKSNGISPSIVTYNLLIKGLC 424

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
              ++ EA+E+ N +    ++ D+ +Y  +I   C    +D+A      +          
Sbjct: 425 NQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVR 484

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
            Y  +I GL  +G+++E  +   +++ + V P+   +N++++   K   + +A  + +EM
Sbjct: 485 TYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRKEM 544

Query: 483 RKNGLNPD 490
            +   N D
Sbjct: 545 LQKRNNHD 552



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 129/500 (25%), Positives = 222/500 (44%), Gaps = 8/500 (1%)

Query: 10  VGEAHKLFFDMKSRGHVP-NVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           +GEA  +   M   G  P N  SY  +I G  R G    A +VFDEM    VLPN +TY+
Sbjct: 43  LGEAVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYN 102

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
            ++ G ++  D+E      F+L ++M     L  N   +  L+  LCR G + E   + +
Sbjct: 103 TMIDGHIKGGDLEAG----FRLRDQMVCH-GLKPNAITYNVLLSGLCRAGRMGETSALLD 157

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
           +M   K V + F    + D L R+G +     +     K G+T    + + +++GLCK G
Sbjct: 158 EMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDG 217

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
               A ++L+  +  G +P+   Y  L+ G C   +LE A      M S+         N
Sbjct: 218 KVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYN 277

Query: 249 IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 308
             +  LC  +  T   ++L+ M      P V T NT+I+ + + G++E+   VL++M   
Sbjct: 278 ALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQEN 337

Query: 309 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE 368
               P+ V++ +I+      G+I EA+ +L   M  +   P    YNA++         +
Sbjct: 338 GL-KPNVVSYGSIVNAFCKNGKIPEAVAILDD-MFHKDVLPNAQVYNAIIDAYVEHGPND 395

Query: 369 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI 428
           +A  +   M   G+     TY ++I GLC  +Q+ EA+   + +     I D   Y  +I
Sbjct: 396 QAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLI 455

Query: 429 KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLN 488
              C  G I +A+     +   G+   +  Y+ +I G        E   + ++M +N + 
Sbjct: 456 SACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVV 515

Query: 489 PDAVTWRILDKLHGNRGNDF 508
           P      I+ + +   GN+ 
Sbjct: 516 PSNAIHNIMVEAYSKYGNEI 535



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 111/457 (24%), Positives = 202/457 (44%), Gaps = 6/457 (1%)

Query: 50  KVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFAN 109
           + F  +   G  P++  ++  V+  +   D+  A      +  RM  +     N  ++  
Sbjct: 13  RAFGILASAGARPDTFAWNKAVQACVAAGDLGEA----VGMLRRMGRDGAPPPNAFSYNV 68

Query: 110 LVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRG 169
           ++  + R G   +   + ++M +   +        MID   + G      R+   M   G
Sbjct: 69  VIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHG 128

Query: 170 LTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKAR 229
           L P+ ++YN ++ GLC+ G       LL+E      +P   TY +L +GL    D +   
Sbjct: 129 LKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAML 188

Query: 230 KVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGF 289
            +    L          C+I L  LC     +    VL  ++     P  +  NT+ING+
Sbjct: 189 SLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGY 248

Query: 290 CKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSP 349
           C+ G +E A      M + +   PD +T+  +I GL    RI  A +LL + M   G +P
Sbjct: 249 CQTGELEGAFSTFGQMKS-RHIKPDHITYNALINGLCKAERITNAQDLLME-MQDNGVNP 306

Query: 350 GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFW 409
            + T+N ++    R  ++E+   V + M   G+  +  +Y  +++  C++ ++ EA    
Sbjct: 307 TVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAIL 366

Query: 410 DDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKL 469
           DD+     + +  VY A+I      G   +A   + ++  +G++P+IV YN++I G C  
Sbjct: 367 DDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQ 426

Query: 470 SMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           S   EA +I+  +  + L PDAV++  L      RGN
Sbjct: 427 SQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGN 463



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 93/381 (24%), Positives = 179/381 (46%), Gaps = 48/381 (12%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   +V  A ++   + + G VP  V Y TLI+GYC+TGE++ A+  F +M+   +
Sbjct: 210 LNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHI 269

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNA--AFANLVDSLCREG 118
            P+ +TY+ L+ G+ +   +  A  L+ ++       +D  VN     F  L+D+  R G
Sbjct: 270 KPDHITYNALINGLCKAERITNAQDLLMEM-------QDNGVNPTVETFNTLIDAYGRTG 322

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
            + + F +  +M +        + G ++++ C++G+   A  ++  M  + + P+   YN
Sbjct: 323 QLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYN 382

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
           +I+    +HG   +A+ L+E+    G  PS  TY +L++GLC +S + +A +++  + + 
Sbjct: 383 AIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNH 442

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
           + +                                   PD ++ NT+I+  C  G I++A
Sbjct: 443 RLI-----------------------------------PDAVSYNTLISACCYRGNIDKA 467

Query: 299 LKVLNDMVAGKFCAPDAV-TFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           L +   M   K+     V T+  +I GL   GR+ E +  LYQ M Q    P    +N +
Sbjct: 468 LDLQQRM--HKYGIKSTVRTYHQLISGLGGAGRLNE-MEYLYQKMMQNNVVPSNAIHNIM 524

Query: 358 LRGLFRLRRVEEAKEVFNCML 378
           +    +     +A+++   ML
Sbjct: 525 VEAYSKYGNEIKAEDLRKEML 545



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 95/419 (22%), Positives = 188/419 (44%), Gaps = 9/419 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R+GE   L  +M S+  VP+  +Y+ L  G  R G+      +F +    GV   
Sbjct: 143 LCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIG 202

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             T S+L+ G+ +   V  A  ++  L         L      +  L++  C+ G +   
Sbjct: 203 DYTCSILLNGLCKDGKVSIAEEVLQSLV-----NAGLVPTRVIYNTLINGYCQTGELEGA 257

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           F     M       +      +I+ LC++ R   A  ++  M+  G+ P++ ++N+++  
Sbjct: 258 FSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDA 317

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
             + G   + + +L E  + G  P+  +Y  +V   C    + +A  +L  M  K  +  
Sbjct: 318 YGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPN 377

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQ-CQPDVITLNTVINGFCKMGRIEEALKVL 302
            ++ N  + A  +   P +   +LV  +++    P ++T N +I G C   +I EA +++
Sbjct: 378 AQVYNAIIDAY-VEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEII 436

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
           N +   +   PDAV++ T+I      G I +AL+ L Q M + G    + TY+ ++ GL 
Sbjct: 437 NSLSNHRLI-PDAVSYNTLISACCYRGNIDKALD-LQQRMHKYGIKSTVRTYHQLISGLG 494

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
              R+ E + ++  M+   VV  +  + I+++   +     +A+    +++   N HD+
Sbjct: 495 GAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRKEMLQKRNNHDD 553


>gi|215768057|dbj|BAH00286.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 506

 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 121/488 (24%), Positives = 235/488 (48%), Gaps = 19/488 (3%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           R G+A ++F +M  R  +PN ++Y T+I G+ + G+++  +++ D+M   G+ PN++TY+
Sbjct: 30  RGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYN 89

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
           VL+ G+ R   +   + L+ ++       + +  +   ++ L D L R G    +  +  
Sbjct: 90  VLLSGLCRAGRMGETSALLDEM-----ASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFG 144

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
              +      ++ C  +++ LC+ G+   A  V+  +   GL P+ V YN++++G C+ G
Sbjct: 145 KYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTG 204

Query: 189 GCMRAYQLLEEGIQFGYLPSEH------TYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
               A+        FG + S H      TY  L+ GLC    +  A+ +L  M       
Sbjct: 205 ELEGAFS------TFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNP 258

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
                N  + A        +   VL  M +   +P+V++  +++N FCK G+I EA+ +L
Sbjct: 259 TVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAIL 318

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
           +DM   K   P+A  +  II   +  G   +A  +L + M   G SP IVTYN +++GL 
Sbjct: 319 DDMFH-KDVLPNAQVYNAIIDAYVEHGPNDQAF-ILVEKMKSNGISPSIVTYNLLIKGLC 376

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
              ++ EA+E+ N +    ++ D+ +Y  +I   C    +D+A      +          
Sbjct: 377 NQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVR 436

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
            Y  +I GL  +G+++E  +   +++ + V P+   +N++++   K   + +A  + +EM
Sbjct: 437 TYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRKEM 496

Query: 483 RKNGLNPD 490
            +   N D
Sbjct: 497 LQKRNNHD 504



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 105/417 (25%), Positives = 187/417 (44%), Gaps = 2/417 (0%)

Query: 90  LWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSL 149
           +  RM  +     N  ++  ++  + R G   +   + ++M +   +        MID  
Sbjct: 1   MLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGH 60

Query: 150 CRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSE 209
            + G      R+   M   GL P+ ++YN ++ GLC+ G       LL+E      +P  
Sbjct: 61  IKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDG 120

Query: 210 HTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVF 269
            TY +L +GL    D +    +    L          C+I L  LC     +    VL  
Sbjct: 121 FTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQS 180

Query: 270 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG 329
           ++     P  +  NT+ING+C+ G +E A      M + +   PD +T+  +I GL    
Sbjct: 181 LVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKS-RHIKPDHITYNALINGLCKAE 239

Query: 330 RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTY 389
           RI  A +LL + M   G +P + T+N ++    R  ++E+   V + M   G+  +  +Y
Sbjct: 240 RITNAQDLLME-MQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSY 298

Query: 390 AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449
             +++  C++ ++ EA    DD+     + +  VY A+I      G   +A   + ++  
Sbjct: 299 GSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKS 358

Query: 450 SGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           +G++P+IV YN++I G C  S   EA +I+  +  + L PDAV++  L      RGN
Sbjct: 359 NGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGN 415



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 93/381 (24%), Positives = 179/381 (46%), Gaps = 48/381 (12%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   +V  A ++   + + G VP  V Y TLI+GYC+TGE++ A+  F +M+   +
Sbjct: 162 LNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHI 221

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNA--AFANLVDSLCREG 118
            P+ +TY+ L+ G+ +   +  A  L+ ++       +D  VN     F  L+D+  R G
Sbjct: 222 KPDHITYNALINGLCKAERITNAQDLLMEM-------QDNGVNPTVETFNTLIDAYGRTG 274

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
            + + F +  +M +        + G ++++ C++G+   A  ++  M  + + P+   YN
Sbjct: 275 QLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYN 334

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
           +I+    +HG   +A+ L+E+    G  PS  TY +L++GLC +S + +A +++  + + 
Sbjct: 335 AIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNH 394

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
           + +                                   PD ++ NT+I+  C  G I++A
Sbjct: 395 RLI-----------------------------------PDAVSYNTLISACCYRGNIDKA 419

Query: 299 LKVLNDMVAGKFCAPDAV-TFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           L +   M   K+     V T+  +I GL   GR+ E +  LYQ M Q    P    +N +
Sbjct: 420 LDLQQRM--HKYGIKSTVRTYHQLISGLGGAGRLNE-MEYLYQKMMQNNVVPSNAIHNIM 476

Query: 358 LRGLFRLRRVEEAKEVFNCML 378
           +    +     +A+++   ML
Sbjct: 477 VEAYSKYGNEIKAEDLRKEML 497



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 95/419 (22%), Positives = 188/419 (44%), Gaps = 9/419 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R+GE   L  +M S+  VP+  +Y+ L  G  R G+      +F +    GV   
Sbjct: 95  LCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIG 154

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             T S+L+ G+ +   V  A  ++  L         L      +  L++  C+ G +   
Sbjct: 155 DYTCSILLNGLCKDGKVSIAEEVLQSLV-----NAGLVPTRVIYNTLINGYCQTGELEGA 209

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           F     M       +      +I+ LC++ R   A  ++  M+  G+ P++ ++N+++  
Sbjct: 210 FSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDA 269

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
             + G   + + +L E  + G  P+  +Y  +V   C    + +A  +L  M  K  +  
Sbjct: 270 YGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPN 329

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQ-CQPDVITLNTVINGFCKMGRIEEALKVL 302
            ++ N  + A  +   P +   +LV  +++    P ++T N +I G C   +I EA +++
Sbjct: 330 AQVYNAIIDAY-VEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEII 388

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
           N +   +   PDAV++ T+I      G I +AL+ L Q M + G    + TY+ ++ GL 
Sbjct: 389 NSLSNHRLI-PDAVSYNTLISACCYRGNIDKALD-LQQRMHKYGIKSTVRTYHQLISGLG 446

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
              R+ E + ++  M+   VV  +  + I+++   +     +A+    +++   N HD+
Sbjct: 447 GAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRKEMLQKRNNHDD 505


>gi|15240249|ref|NP_200948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171473|sp|Q9FLJ4.1|PP440_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g61400
 gi|9757861|dbj|BAB08495.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010079|gb|AED97462.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 654

 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 128/487 (26%), Positives = 236/487 (48%), Gaps = 44/487 (9%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M SRG VP+V  Y  L     + G      K+ DEM   G+ PN   Y++ +  + R   
Sbjct: 190 MISRGLVPDVHIYFVLFQCCFKQGLYSKKEKLLDEMTSLGIKPNVYIYTIYILDLCRDNK 249

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
           +E A     K++E MK+   L  N   ++ ++D  C+ G V + + + +++   + +   
Sbjct: 250 MEEAE----KMFELMKKHGVLP-NLYTYSAMIDGYCKTGNVRQAYGLYKEILVAELLPNV 304

Query: 140 FACGHMIDSLCRSGRNHGASRVVYV-MRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLE 198
              G ++D  C++ R    +R ++V M K G+ P+L  YN ++HG CK G  + A  LL 
Sbjct: 305 VVFGTLVDGFCKA-RELVTARSLFVHMVKFGVDPNLYVYNCLIHGHCKSGNMLEAVGLLS 363

Query: 199 EGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIK 258
           E       P   TY +L+ GLC E  + +A ++ Q M +++                   
Sbjct: 364 EMESLNLSPDVFTYTILINGLCIEDQVAEANRLFQKMKNER------------------- 404

Query: 259 NPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTF 318
                    +F       P   T N++I+G+CK   +E+AL + ++M A     P+ +TF
Sbjct: 405 ---------IF-------PSSATYNSLIHGYCKEYNMEQALDLCSEMTASGV-EPNIITF 447

Query: 319 TTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCML 378
           +T+I G  NV  I+ A+ L ++ M  +G  P +VTY A++   F+   ++EA  +++ ML
Sbjct: 448 STLIDGYCNVRDIKAAMGLYFE-MTIKGIVPDVVTYTALIDAHFKEANMKEALRLYSDML 506

Query: 379 GIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIH 438
             G+  +  T+A ++DG  +  +L  A  F+ +     +  ++  +  +I+GLC++G I 
Sbjct: 507 EAGIHPNDHTFACLVDGFWKEGRLSVAIDFYQENNQQRSCWNHVGFTCLIEGLCQNGYIL 566

Query: 439 EAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILD 498
            A  F  ++   G+TP+I  Y  ++ G  +     +   +  +M K G+ P+ +  ++L 
Sbjct: 567 RASRFFSDMRSCGITPDICSYVSMLKGHLQEKRITDTMMLQCDMIKTGILPNLLVNQLLA 626

Query: 499 KLHGNRG 505
           + +   G
Sbjct: 627 RFYQANG 633



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 102/382 (26%), Positives = 179/382 (46%), Gaps = 7/382 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC  +++ EA K+F  MK  G +PN+ +Y+ +I GYC+TG +  AY ++ E+    +LPN
Sbjct: 244 LCRDNKMEEAEKMFELMKKHGVLPNLYTYSAMIDGYCKTGNVRQAYGLYKEILVAELLPN 303

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            + +  LV G  + R++  A  L   +  +   + +L V N     L+   C+ G + E 
Sbjct: 304 VVVFGTLVDGFCKARELVTARSLFVHMV-KFGVDPNLYVYNC----LIHGHCKSGNMLEA 358

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             +  +M       + F    +I+ LC   +   A+R+   M+   + PS  +YNS++HG
Sbjct: 359 VGLLSEMESLNLSPDVFTYTILINGLCIEDQVAEANRLFQKMKNERIFPSSATYNSLIHG 418

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK     +A  L  E    G  P+  T+  L++G C   D++ A  +   M  K  V  
Sbjct: 419 YCKEYNMEQALDLCSEMTASGVEPNIITFSTLIDGYCNVRDIKAAMGLYFEMTIKGIVPD 478

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                  + A     N  E L +   ML+    P+  T   +++GF K GR+  A+    
Sbjct: 479 VVTYTALIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSVAIDFYQ 538

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           +    + C  + V FT +I GL   G I  A +  +  M   G +P I +Y ++L+G  +
Sbjct: 539 ENNQQRSCW-NHVGFTCLIEGLCQNGYILRA-SRFFSDMRSCGITPDICSYVSMLKGHLQ 596

Query: 364 LRRVEEAKEVFNCMLGIGVVAD 385
            +R+ +   +   M+  G++ +
Sbjct: 597 EKRITDTMMLQCDMIKTGILPN 618



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 122/502 (24%), Positives = 217/502 (43%), Gaps = 70/502 (13%)

Query: 12  EAHKLFFDMKSRGHVP---NVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           EA KLF +  SR  V    ++ S++ +IH    TG             H   L   L  S
Sbjct: 56  EAFKLF-ETSSRSRVSKSNDLQSFSAVIH--VLTGA------------HKYTLARCLIKS 100

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
           ++ R     R  E +N +  +L+  +++ +    +   F+ L+      G   E   ++ 
Sbjct: 101 LIER---LKRHSEPSN-MSHRLFNALEDIQSPKFSIGVFSLLIMEFLEMGLFEEALWVSR 156

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
           +M   K   +  AC  +++ L R  R         +M  RGL P +  Y  +     K G
Sbjct: 157 EM---KCSPDSKACLSILNGLVRRRRFDSVWVDYQLMISRGLVPDVHIYFVLFQCCFKQG 213

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
              +  +LL+E    G  P+ + Y + +  LC ++ +E+A K+ + M  KK         
Sbjct: 214 LYSKKEKLLDEMTSLGIKPNVYIYTIYILDLCRDNKMEEAEKMFELM--KKH-------- 263

Query: 249 IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 308
                            VL         P++ T + +I+G+CK G + +A  +  +++  
Sbjct: 264 ----------------GVL---------PNLYTYSAMIDGYCKTGNVRQAYGLYKEILVA 298

Query: 309 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE 368
           +   P+ V F T++ G      +  A +L    M + G  P +  YN ++ G  +   + 
Sbjct: 299 EL-LPNVVVFGTLVDGFCKARELVTARSLFVH-MVKFGVDPNLYVYNCLIHGHCKSGNML 356

Query: 369 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI----VWPSNIHDNYVY 424
           EA  + + M  + +  D  TY I+I+GLC  +Q+ EA R +  +    ++PS+      Y
Sbjct: 357 EAVGLLSEMESLNLSPDVFTYTILINGLCIEDQVAEANRLFQKMKNERIFPSSA----TY 412

Query: 425 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484
            ++I G C+   + +A+    E+  SGV PNI+ ++ +IDG C +   + A  +  EM  
Sbjct: 413 NSLIHGYCKEYNMEQALDLCSEMTASGVEPNIITFSTLIDGYCNVRDIKAAMGLYFEMTI 472

Query: 485 NGLNPDAVTWRILDKLHGNRGN 506
            G+ PD VT+  L   H    N
Sbjct: 473 KGIVPDVVTYTALIDAHFKEAN 494



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 83/359 (23%), Positives = 151/359 (42%), Gaps = 42/359 (11%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C    +  A  LF  M   G  PN+  Y  LIHG+C++G M  A  +  EM    +
Sbjct: 311 VDGFCKARELVTARSLFVHMVKFGVDPNLYVYNCLIHGHCKSGNMLEAVGLLSEMESLNL 370

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+  TY++L+ G+     V  AN    +L+++MK E  +  ++A + +L+   C+E  +
Sbjct: 371 SPDVFTYTILINGLCIEDQVAEAN----RLFQKMKNER-IFPSSATYNSLIHGYCKEYNM 425

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +   +  +M              +ID  C       A  + + M  +G+ P +V+Y ++
Sbjct: 426 EQALDLCSEMTASGVEPNIITFSTLIDGYCNVRDIKAAMGLYFEMTIKGIVPDVVTYTAL 485

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +    K      A +L  + ++ G  P++HT+  LV+G   E  L  A    Q      +
Sbjct: 486 IDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSVAIDFYQ------E 539

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
            ++ R C  ++   CLI+                             G C+ G I  A +
Sbjct: 540 NNQQRSCWNHVGFTCLIE-----------------------------GLCQNGYILRASR 570

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
             +DM +     PD  ++ +++ G L   RI + + +L   M + G  P ++    + R
Sbjct: 571 FFSDMRSCGI-TPDICSYVSMLKGHLQEKRITDTM-MLQCDMIKTGILPNLLVNQLLAR 627


>gi|413948663|gb|AFW81312.1| hypothetical protein ZEAMMB73_082399 [Zea mays]
          Length = 798

 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 139/532 (26%), Positives = 238/532 (44%), Gaps = 80/532 (15%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHV---PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           LC   +  EA +L   M + G     PNVVSY+T+I G+ + GE+D AY +FDEM   G 
Sbjct: 175 LCVEKKSQEALELLLHMTADGGYNCSPNVVSYSTIIDGFFKEGEVDKAYFLFDEMIGQGF 234

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TYS                                        +L+D LC+   +
Sbjct: 235 PPDVVTYS----------------------------------------SLIDGLCKAQAM 254

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           N+   I + M     +        MI   C  G+   A R++  M   GL P +V+Y  +
Sbjct: 255 NKAEAILQHMFDKGVMPNTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYILL 314

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +   CK G C  A  + +  ++ G  P+   Y +L+ G   +  L   R +L  M+    
Sbjct: 315 IQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGI 374

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
               R  NI + A        + +     M Q   +PDV++ +TVI+  CK+GR+E+A+ 
Sbjct: 375 PFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKIGRVEDAVY 434

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
             N MV+    +P+ ++FT++I GL ++G  ++   L ++ M  RG  P  +  N ++  
Sbjct: 435 HFNQMVSEGL-SPNIISFTSLIHGLCSIGEWKKVEELAFE-MINRGIHPDAIFMNTIMDN 492

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L +  RV EA++ F+ ++ IGV  +  +Y  +IDG C   ++DE+ + +D +V      D
Sbjct: 493 LCKEGRVVEAQDFFDMVIHIGVKPNVVSYNTLIDGYCFVGKMDESIKQFDRMVSIGLRPD 552

Query: 421 NYVYAAMIKGLCRSGKIHEA----------------------VHFLYE------------ 446
           ++ Y A++ G  ++G++ +A                      +H L++            
Sbjct: 553 SWTYNALLNGYFKNGRVEDALALYREMFRKDVKFCAITSNIILHGLFQAGRIVAARELYM 612

Query: 447 -LVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            +VD G    I  YN V+ G C+ S   EA ++  ++R      D  T+ I+
Sbjct: 613 KMVDRGTQLRIETYNTVLGGLCENSCVDEALRMFEDLRSKEFELDVWTFNIV 664



 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 127/517 (24%), Positives = 250/517 (48%), Gaps = 12/517 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    + +A  +   M  +G +PN  +Y  +I GYC  G+++ A ++  +M   G+
Sbjct: 245 IDGLCKAQAMNKAEAILQHMFDKGVMPNTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGL 304

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TY +L++   +      A  +   +  + ++      N+  +  L+     +G +
Sbjct: 305 QPDVVTYILLIQYYCKIGRCAEARSVFDSMVRKGQKP-----NSTIYHILLHGYATKGAL 359

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +V  + + M +     E  A   +I +  + G    A      MR+ GL P +VSY+++
Sbjct: 360 IDVRDLLDLMIRDGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTV 419

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +H LCK G    A     + +  G  P+  ++  L+ GLC   + +K  ++   M+++  
Sbjct: 420 IHILCKIGRVEDAVYHFNQMVSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGI 479

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                  N  +  LC      E  +    ++    +P+V++ NT+I+G+C +G+++E++K
Sbjct: 480 HPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPNVVSYNTLIDGYCFVGKMDESIK 539

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
             + MV+     PD+ T+  ++ G    GR+++AL  LY+ M ++      +T N +L G
Sbjct: 540 QFDRMVSIGL-RPDSWTYNALLNGYFKNGRVEDALA-LYREMFRKDVKFCAITSNIILHG 597

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           LF+  R+  A+E++  M+  G      TY  V+ GLCE++ +DEA R ++D+       D
Sbjct: 598 LFQAGRIVAARELYMKMVDRGTQLRIETYNTVLGGLCENSCVDEALRMFEDLRSKEFELD 657

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
            + +  +I  L + G+I EA      +V  G  P+++ Y+++I    +  +  E+  +  
Sbjct: 658 VWTFNIVINALLKVGRIDEAKSLFSAMVLRGPVPHVITYSLMIKSRIEEGLLEESDDLFL 717

Query: 481 EMRKNGLNPDA-----VTWRILDKLHGNRGNDFGLRI 512
            M KNG   D+     +  R+L+K    R   +  +I
Sbjct: 718 SMEKNGCAADSHMLNVIIRRLLEKGDVRRAGTYLTKI 754



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 138/498 (27%), Positives = 216/498 (43%), Gaps = 17/498 (3%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C L ++ EA +L   M   G  P+VV+Y  LI  YC+ G    A  VFD M   G  PNS
Sbjct: 284 CSLGQLEEAVRLLKKMSGSGLQPDVVTYILLIQYYCKIGRCAEARSVFDSMVRKGQKPNS 343

Query: 65  LTYSVLVRGVLRTR---DVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVN 121
             Y +L+ G        DV     LM +        + +   + AF  L+ +  + G V+
Sbjct: 344 TIYHILLHGYATKGALIDVRDLLDLMIR--------DGIPFEHRAFNILICAYAKHGAVD 395

Query: 122 EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
           +      +M Q     +  +   +I  LC+ GR   A      M   GL+P+++S+ S++
Sbjct: 396 KAMTAFTEMRQNGLRPDVVSYSTVIHILCKIGRVEDAVYHFNQMVSEGLSPNIISFTSLI 455

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
           HGLC  G   +  +L  E I  G  P       +++ LC E  + +A+     ++     
Sbjct: 456 HGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVK 515

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
                 N  +   C +    E +     M+    +PD  T N ++NG+ K GR+E+AL +
Sbjct: 516 PNVVSYNTLIDGYCFVGKMDESIKQFDRMVSIGLRPDSWTYNALLNGYFKNGRVEDALAL 575

Query: 302 LNDMVAG--KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
             +M     KFCA   +T   I+ GL   GRI  A  L Y  M  RG    I TYN VL 
Sbjct: 576 YREMFRKDVKFCA---ITSNIILHGLFQAGRIVAAREL-YMKMVDRGTQLRIETYNTVLG 631

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
           GL     V+EA  +F  +       D  T+ IVI+ L +  ++DEAK  +  +V    + 
Sbjct: 632 GLCENSCVDEALRMFEDLRSKEFELDVWTFNIVINALLKVGRIDEAKSLFSAMVLRGPVP 691

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
               Y+ MIK     G + E+      +  +G   +    NV+I    +    R A   L
Sbjct: 692 HVITYSLMIKSRIEEGLLEESDDLFLSMEKNGCAADSHMLNVIIRRLLEKGDVRRAGTYL 751

Query: 480 REMRKNGLNPDAVTWRIL 497
            ++ +   + +A T  +L
Sbjct: 752 TKIDEKNFSVEASTAALL 769



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 132/501 (26%), Positives = 221/501 (44%), Gaps = 79/501 (15%)

Query: 35  LIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERM 94
           LI  +C  G +D+A+  F      G    ++T + L++G+    D +R +  M  ++ RM
Sbjct: 100 LIRCFCTVGRLDLAFAAFALFLKMGWRVQNVTLNQLIKGLC---DGKRTDDAMDMVFRRM 156

Query: 95  KEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGR 154
            E                     GY  +V                F+   +I  LC   +
Sbjct: 157 PE--------------------LGYTPDV----------------FSYNALIKGLCVEKK 180

Query: 155 NHGASRVVYVMRKRG---LTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHT 211
           +  A  ++  M   G    +P++VSY++I+ G  K G   +AY L +E I  G+ P   T
Sbjct: 181 SQEALELLLHMTADGGYNCSPNVVSYSTIIDGFFKEGEVDKAYFLFDEMIGQGFPPDVVT 240

Query: 212 YKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFML 271
           Y  L++GLC    + KA  +LQ M  K  +  TR  NI +R  C +    E + +L  M 
Sbjct: 241 YSSLIDGLCKAQAMNKAEAILQHMFDKGVMPNTRTYNIMIRGYCSLGQLEEAVRLLKKMS 300

Query: 272 QTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRI 331
            +  QPDV+T   +I  +CK+GR  EA  V + MV  K   P++  +  ++ G    G +
Sbjct: 301 GSGLQPDVVTYILLIQYYCKIGRCAEARSVFDSMVR-KGQKPNSTIYHILLHGYATKGAL 359

Query: 332 ------------------QEALNLL----------------YQVMPQRGYSPGIVTYNAV 357
                               A N+L                +  M Q G  P +V+Y+ V
Sbjct: 360 IDVRDLLDLMIRDGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTV 419

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 417
           +  L ++ RVE+A   FN M+  G+  +  ++  +I GLC   +  + +    +++    
Sbjct: 420 IHILCKIGRVEDAVYHFNQMVSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMI-NRG 478

Query: 418 IHDNYVYA-AMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAY 476
           IH + ++   ++  LC+ G++ EA  F   ++  GV PN+V YN +IDG C +    E+ 
Sbjct: 479 IHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPNVVSYNTLIDGYCFVGKMDESI 538

Query: 477 QILREMRKNGLNPDAVTWRIL 497
           +    M   GL PD+ T+  L
Sbjct: 539 KQFDRMVSIGLRPDSWTYNAL 559



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 121/225 (53%), Gaps = 4/225 (1%)

Query: 280 ITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLY 339
           +TLN +I G C   R ++A+ ++   +      PD  ++  +I GL    + QEAL LL 
Sbjct: 130 VTLNQLIKGLCDGKRTDDAMDMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALELLL 189

Query: 340 QVMPQRGY--SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLC 397
            +    GY  SP +V+Y+ ++ G F+   V++A  +F+ M+G G   D  TY+ +IDGLC
Sbjct: 190 HMTADGGYNCSPNVVSYSTIIDGFFKEGEVDKAYFLFDEMIGQGFPPDVVTYSSLIDGLC 249

Query: 398 ESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIV 457
           ++  +++A+     +     + +   Y  MI+G C  G++ EAV  L ++  SG+ P++V
Sbjct: 250 KAQAMNKAEAILQHMFDKGVMPNTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVV 309

Query: 458 CYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
            Y ++I   CK+    EA  +   M + G  P++  + IL  LHG
Sbjct: 310 TYILLIQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHIL--LHG 352



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 64/128 (50%), Gaps = 5/128 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ L  + R+ EA  LF  M  RG VP+V++Y+ +I      G ++ +  +F  M   G 
Sbjct: 665 INALLKVGRIDEAKSLFSAMVLRGPVPHVITYSLMIKSRIEEGLLEESDDLFLSMEKNGC 724

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             +S   +V++R +L   DV RA   + K+     +E++ SV  +  A L+  +  + Y 
Sbjct: 725 AADSHMLNVIIRRLLEKGDVRRAGTYLTKI-----DEKNFSVEASTAALLIPIVSEKKYQ 779

Query: 121 NEVFRIAE 128
            EV  + E
Sbjct: 780 KEVKFLPE 787


>gi|224069551|ref|XP_002326371.1| predicted protein [Populus trichocarpa]
 gi|222833564|gb|EEE72041.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 121/479 (25%), Positives = 224/479 (46%), Gaps = 7/479 (1%)

Query: 28  NVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLM 87
           +V SY  L+    R   +D   +V+ EM +  ++PN  T + +V    +  ++  AN+ +
Sbjct: 178 SVRSYNELLMMLARFLMIDEMKRVYTEMLNDMIVPNIYTLNTMVNAYSKMGNIVEANLYV 237

Query: 88  FKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMID 147
            K+++       LS ++  + +L+   CR   VN  +++   MP       E +   +I 
Sbjct: 238 SKIFQ-----AGLSPDSFTYTSLILGYCRNNDVNSAYKVFNMMPNKGCRRNEVSYTTIIH 292

Query: 148 SLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLP 207
            LC +GR      +   MR+    P++ +Y  I+H L  +   +    L  E  +    P
Sbjct: 293 GLCEAGRIDEGISLFKKMREDDCYPTVRTYTVIIHALFGNDRNLEGMDLFNEMRERSCEP 352

Query: 208 SEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVL 267
           + HTY V+V+ +C E  L+++R++L  M+ K  V      N  +R  C        L +L
Sbjct: 353 NVHTYTVMVDAMCKERKLDESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEIL 412

Query: 268 VFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLN 327
             M    C+P+  T N +I GF K   + +A+ +L+ M+  K   P  VT+ ++I     
Sbjct: 413 GLMESNNCRPNERTYNELICGFSKRKHVHKAMTLLSKMLESKL-TPSLVTYNSLIHVQCK 471

Query: 328 VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADST 387
            G    A  LL  ++ + G  P   TY+  +  L + +R+EEA ++FN +   G+ A+  
Sbjct: 472 AGHFDSAYKLL-DLLKENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEV 530

Query: 388 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYEL 447
            Y  +IDG C++ ++DEA    + +     + ++  Y ++I G+C+ GK+ E +  +  +
Sbjct: 531 MYTALIDGHCKAGKIDEAISLLERMHSEDCLPNSSTYNSLIYGVCKEGKVQEGLSMVENM 590

Query: 448 VDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
              GV P +  Y ++I+   +      A ++  +M   G  PD  T+      +   GN
Sbjct: 591 SKMGVKPTVATYTILIEEMLREGDFDHANRVFNQMVSFGHKPDVYTYTAFIHTYCTSGN 649



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 123/474 (25%), Positives = 223/474 (47%), Gaps = 7/474 (1%)

Query: 24  GHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERA 83
           G  P+  +YT+LI GYCR  +++ AYKVF+ M + G   N ++Y+ ++ G+     ++  
Sbjct: 244 GLSPDSFTYTSLILGYCRNNDVNSAYKVFNMMPNKGCRRNEVSYTTIIHGLCEAGRIDEG 303

Query: 84  NVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACG 143
                 L+++M+E+ D       +  ++ +L       E   +  +M +           
Sbjct: 304 ----ISLFKKMRED-DCYPTVRTYTVIIHALFGNDRNLEGMDLFNEMRERSCEPNVHTYT 358

Query: 144 HMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQF 203
            M+D++C+  +   + R++  M ++GL PS+V+YN+++ G C+ G    A ++L      
Sbjct: 359 VMVDAMCKERKLDESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEILGLMESN 418

Query: 204 GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTEL 263
              P+E TY  L+ G      + KA  +L  ML  K        N  +   C   +    
Sbjct: 419 NCRPNERTYNELICGFSKRKHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQCKAGHFDSA 478

Query: 264 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF 323
             +L  + +    PD  T +  I+  CK  R+EEA  + N +   K    + V +T +I 
Sbjct: 479 YKLLDLLKENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSL-KEKGIKANEVMYTALID 537

Query: 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 383
           G    G+I EA++LL + M      P   TYN+++ G+ +  +V+E   +   M  +GV 
Sbjct: 538 GHCKAGKIDEAISLL-ERMHSEDCLPNSSTYNSLIYGVCKEGKVQEGLSMVENMSKMGVK 596

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
               TY I+I+ +      D A R ++ +V   +  D Y Y A I   C SG + EA   
Sbjct: 597 PTVATYTILIEEMLREGDFDHANRVFNQMVSFGHKPDVYTYTAFIHTYCTSGNVKEAEGM 656

Query: 444 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           +  ++++GV P+ + Y ++I    +L +  +A+ +L+ M   G +P    W  L
Sbjct: 657 MARMIEAGVMPDSLTYTLLISAYERLGLAYDAFNVLKRMLDAGCDPSHPIWNNL 710



 Score =  181 bits (459), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 120/460 (26%), Positives = 217/460 (47%), Gaps = 9/460 (1%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C  + V  A+K+F  M ++G   N VSYTT+IHG C  G +D    +F +MR     P  
Sbjct: 260 CRNNDVNSAYKVFNMMPNKGCRRNEVSYTTIIHGLCEAGRIDEGISLFKKMREDDCYPTV 319

Query: 65  LTYSVLVRGVL-RTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            TY+V++  +    R++E  +     L+  M+E      N   +  +VD++C+E  ++E 
Sbjct: 320 RTYTVIIHALFGNDRNLEGMD-----LFNEMRERS-CEPNVHTYTVMVDAMCKERKLDES 373

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            RI  +M +   V        +I   C  GR   A  ++ +M      P+  +YN ++ G
Sbjct: 374 RRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEILGLMESNNCRPNERTYNELICG 433

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
             K     +A  LL + ++    PS  TY  L+   C     + A K+L  +     V  
Sbjct: 434 FSKRKHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQCKAGHFDSAYKLLDLLKENGLVPD 493

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               ++++  LC  K   E  ++   + +   + + +    +I+G CK G+I+EA+ +L 
Sbjct: 494 QWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALIDGHCKAGKIDEAISLLE 553

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            M   + C P++ T+ ++I+G+   G++QE L+++ + M + G  P + TY  ++  + R
Sbjct: 554 RM-HSEDCLPNSSTYNSLIYGVCKEGKVQEGLSMV-ENMSKMGVKPTVATYTILIEEMLR 611

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
               + A  VFN M+  G   D  TY   I   C S  + EA+     ++    + D+  
Sbjct: 612 EGDFDHANRVFNQMVSFGHKPDVYTYTAFIHTYCTSGNVKEAEGMMARMIEAGVMPDSLT 671

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463
           Y  +I    R G  ++A + L  ++D+G  P+   +N +I
Sbjct: 672 YTLLISAYERLGLAYDAFNVLKRMLDAGCDPSHPIWNNLI 711



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 92/359 (25%), Positives = 176/359 (49%), Gaps = 9/359 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D +C   ++ E+ ++  +M  +G VP+VV+Y  LI GYC  G ++ A ++   M     
Sbjct: 361 VDAMCKERKLDESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEILGLMESNNC 420

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN  TY+ L+ G  + + V +A  L+ K+      E  L+ +   + +L+   C+ G+ 
Sbjct: 421 RPNERTYNELICGFSKRKHVHKAMTLLSKML-----ESKLTPSLVTYNSLIHVQCKAGHF 475

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +  +++ + + +   V +++     ID+LC+S R   A  +   ++++G+  + V Y ++
Sbjct: 476 DSAYKLLDLLKENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTAL 535

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G CK G    A  LLE       LP+  TY  L+ G+C E  +++   +++ M SK  
Sbjct: 536 IDGHCKAGKIDEAISLLERMHSEDCLPNSSTYNSLIYGVCKEGKVQEGLSMVENM-SKMG 594

Query: 241 VDRTRICNIYLRALCLIKNPTELLN-VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
           V  T      L    L +   +  N V   M+    +PDV T    I+ +C  G ++EA 
Sbjct: 595 VKPTVATYTILIEEMLREGDFDHANRVFNQMVSFGHKPDVYTYTAFIHTYCTSGNVKEAE 654

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
            ++  M+      PD++T+T +I     +G   +A N+L +++   G  P    +N ++
Sbjct: 655 GMMARMIEAG-VMPDSLTYTLLISAYERLGLAYDAFNVLKRML-DAGCDPSHPIWNNLI 711


>gi|297800016|ref|XP_002867892.1| EMB1025 [Arabidopsis lyrata subsp. lyrata]
 gi|297313728|gb|EFH44151.1| EMB1025 [Arabidopsis lyrata subsp. lyrata]
          Length = 658

 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 115/398 (28%), Positives = 202/398 (50%), Gaps = 5/398 (1%)

Query: 99  DLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGA 158
           ++S N  +F  ++ +LC+ G+V+    +   MP+ K + + +    ++D LC+  R   A
Sbjct: 182 NISPNGLSFNLVIKALCKLGFVDRAIEVFRGMPEKKCLPDGYTYCTLMDGLCKEERIDEA 241

Query: 159 SRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEG 218
             ++  M+  G +PS V YN ++ GLCK G   R  +L++     G  P+E TY  L+ G
Sbjct: 242 VLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLSRVTKLVDNMFLKGCFPNEVTYNTLIHG 301

Query: 219 LCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPD 278
           LC +  L+KA  +L+ M+S K +         +  L   +   +   +L+ M +   + +
Sbjct: 302 LCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRAMDGARLLISMEERGYRLN 361

Query: 279 VITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLL 338
               + +I+G  K G+ EEA+ +   M A K C P+ V ++ +I GL   G+  EA  +L
Sbjct: 362 QHIYSVLISGLFKEGKAEEAMTLWKKM-AEKGCRPNIVVYSAVIDGLCREGKPNEAKEIL 420

Query: 339 YQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE 398
              M   G  P + TY+++++G F+    EEA +V+  M   G   +   Y+++IDGLC 
Sbjct: 421 -NGMISSGCLPNVYTYSSLMKGFFKTGLSEEAIQVWREMDETGCSRNEFCYSVLIDGLCG 479

Query: 399 SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELV---DSGVTPN 455
             ++ EA   W  ++      D   Y++MIKGLC  G +  A+   +E++   +    P+
Sbjct: 480 VGRVKEAMMVWSKMLTIGIKPDTVAYSSMIKGLCGIGSMDAALKLYHEMLCQEEPKSQPD 539

Query: 456 IVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVT 493
           +V YN+++DG C       A  +L  M   G +PD +T
Sbjct: 540 VVTYNILLDGLCMQKDVSRAVDLLNCMLDRGCDPDVIT 577



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 104/344 (30%), Positives = 184/344 (53%), Gaps = 3/344 (0%)

Query: 170 LTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKAR 229
           ++P+ +S+N ++  LCK G   RA ++     +   LP  +TY  L++GLC E  +++A 
Sbjct: 183 ISPNGLSFNLVIKALCKLGFVDRAIEVFRGMPEKKCLPDGYTYCTLMDGLCKEERIDEAV 242

Query: 230 KVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGF 289
            +L  M S+       I N+ +  LC   + + +  ++  M    C P+ +T NT+I+G 
Sbjct: 243 LLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLSRVTKLVDNMFLKGCFPNEVTYNTLIHGL 302

Query: 290 CKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSP 349
           C  G++++A+ +L  MV+ K C P+ VT+ T+I GL+   R  +   LL   M +RGY  
Sbjct: 303 CLKGKLDKAVSLLERMVSSK-CIPNDVTYGTLINGLVKQRRAMDGARLLIS-MEERGYRL 360

Query: 350 GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFW 409
               Y+ ++ GLF+  + EEA  ++  M   G   +   Y+ VIDGLC   + +EAK   
Sbjct: 361 NQHIYSVLISGLFKEGKAEEAMTLWKKMAEKGCRPNIVVYSAVIDGLCREGKPNEAKEIL 420

Query: 410 DDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKL 469
           + ++    + + Y Y++++KG  ++G   EA+    E+ ++G + N  CY+V+IDG C +
Sbjct: 421 NGMISSGCLPNVYTYSSLMKGFFKTGLSEEAIQVWREMDETGCSRNEFCYSVLIDGLCGV 480

Query: 470 SMKREAYQILREMRKNGLNPDAVTWRILDK-LHGNRGNDFGLRI 512
              +EA  +  +M   G+ PD V +  + K L G    D  L++
Sbjct: 481 GRVKEAMMVWSKMLTIGIKPDTVAYSSMIKGLCGIGSMDAALKL 524



 Score =  167 bits (424), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 124/495 (25%), Positives = 228/495 (46%), Gaps = 66/495 (13%)

Query: 27  PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVL 86
           PN +S+  +I   C+ G +D A +VF  M     LP+  TY  L+ G+ +   ++ A +L
Sbjct: 185 PNGLSFNLVIKALCKLGFVDRAIEVFRGMPEKKCLPDGYTYCTLMDGLCKEERIDEAVLL 244

Query: 87  MFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMI 146
           + ++     + E  S +   +  L+D LC++G ++ V ++ ++M        E     +I
Sbjct: 245 LDEM-----QSEGCSPSPVIYNVLIDGLCKKGDLSRVTKLVDNMFLKGCFPNEVTYNTLI 299

Query: 147 DSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL 206
             LC  G+   A  ++  M      P+ V+Y ++++GL K    M   +LL    + GY 
Sbjct: 300 HGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRAMDGARLLISMEERGYR 359

Query: 207 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 266
            ++H Y VL+ GL  E   E+A       L KK                           
Sbjct: 360 LNQHIYSVLISGLFKEGKAEEA-----MTLWKK--------------------------- 387

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
              M +  C+P+++  + VI+G C+ G+  EA ++LN M++   C P+  T+++++ G  
Sbjct: 388 ---MAEKGCRPNIVVYSAVIDGLCREGKPNEAKEILNGMISSG-CLPNVYTYSSLMKGFF 443

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
             G  +EA+  +++ M + G S     Y+ ++ GL  + RV+EA  V++ ML IG+  D+
Sbjct: 444 KTGLSEEAIQ-VWREMDETGCSRNEFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDT 502

Query: 387 TTYAIVIDGLCESNQLDEAKRFWDDIVW---PSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
             Y+ +I GLC    +D A + + +++    P +  D   Y  ++ GLC    +  AV  
Sbjct: 503 VAYSSMIKGLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNILLDGLCMQKDVSRAVDL 562

Query: 444 LYELVDSGVTPNIVCYNVVIDGACKLS-----------------MKRE----AYQILREM 482
           L  ++D G  P+++  N  ++   + S                 +KR+    A +I+  M
Sbjct: 563 LNCMLDRGCDPDVITCNTFLNTLSEKSDSCEEGRSFLEELVARLLKRQRVSGACKIVEVM 622

Query: 483 RKNGLNPDAVTWRIL 497
               L P   TW ++
Sbjct: 623 LGKYLAPKTSTWAMI 637



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 109/413 (26%), Positives = 202/413 (48%), Gaps = 9/413 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC L  V  A ++F  M  +  +P+  +Y TL+ G C+   +D A  + DEM+  G  P+
Sbjct: 197 LCKLGFVDRAIEVFRGMPEKKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPS 256

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            + Y+VL+ G+ +  D+ R   L+  ++ +         N   +  L+  LC +G +++ 
Sbjct: 257 PVIYNVLIDGLCKKGDLSRVTKLVDNMFLK-----GCFPNEVTYNTLIHGLCLKGKLDKA 311

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             + E M   K +  +   G +I+ L +  R    +R++  M +RG   +   Y+ ++ G
Sbjct: 312 VSLLERMVSSKCIPNDVTYGTLINGLVKQRRAMDGARLLISMEERGYRLNQHIYSVLISG 371

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           L K G    A  L ++  + G  P+   Y  +++GLC E    +A+++L  M+S   +  
Sbjct: 372 LFKEGKAEEAMTLWKKMAEKGCRPNIVVYSAVIDGLCREGKPNEAKEILNGMISSGCLPN 431

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               +  ++         E + V   M +T C  +    + +I+G C +GR++EA+ V +
Sbjct: 432 VYTYSSLMKGFFKTGLSEEAIQVWREMDETGCSRNEFCYSVLIDGLCGVGRVKEAMMVWS 491

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQR--GYSPGIVTYNAVLRGL 361
            M+      PD V ++++I GL  +G +  AL L ++++ Q      P +VTYN +L GL
Sbjct: 492 KMLTIGI-KPDTVAYSSMIKGLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNILLDGL 550

Query: 362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE-SNQLDEAKRFWDDIV 413
              + V  A ++ NCML  G   D  T    ++ L E S+  +E + F +++V
Sbjct: 551 CMQKDVSRAVDLLNCMLDRGCDPDVITCNTFLNTLSEKSDSCEEGRSFLEELV 603



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 114/438 (26%), Positives = 210/438 (47%), Gaps = 34/438 (7%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           MD LC   R+ EA  L  +M+S G  P+ V Y  LI G C+ G++    K+ D M   G 
Sbjct: 229 MDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLSRVTKLVDNMFLKGC 288

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +TY+ L+ G+     +++A      L ERM   + +  N+  +  L++ L ++   
Sbjct: 289 FPNEVTYNTLIHGLCLKGKLDKA----VSLLERMVSSKCIP-NDVTYGTLINGLVKQRRA 343

Query: 121 NEVFRIAEDMPQ-GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
            +  R+   M + G  +N+      +I  L + G+   A  +   M ++G  P++V Y++
Sbjct: 344 MDGARLLISMEERGYRLNQHIY-SVLISGLFKEGKAEEAMTLWKKMAEKGCRPNIVVYSA 402

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++ GLC+ G    A ++L   I  G LP+ +TY  L++G       E+A +V + M  + 
Sbjct: 403 VIDGLCREGKPNEAKEILNGMISSGCLPNVYTYSSLMKGFFKTGLSEEAIQVWREM-DET 461

Query: 240 DVDRTRIC-NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
              R   C ++ +  LC +    E + V   ML    +PD +  +++I G C +G ++ A
Sbjct: 462 GCSRNEFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSMIKGLCGIGSMDAA 521

Query: 299 LKVLNDMVAGK--FCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
           LK+ ++M+  +     PD VT+  ++ GL     +  A++LL   M  RG  P ++T N 
Sbjct: 522 LKLYHEMLCQEEPKSQPDVVTYNILLDGLCMQKDVSRAVDLL-NCMLDRGCDPDVITCNT 580

Query: 357 VLRG---------------------LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG 395
            L                       L + +RV  A ++   MLG  +   ++T+A+++  
Sbjct: 581 FLNTLSEKSDSCEEGRSFLEELVARLLKRQRVSGACKIVEVMLGKYLAPKTSTWAMIVPE 640

Query: 396 LCESNQLDEA-KRFWDDI 412
           +C+  +++ A  + W ++
Sbjct: 641 ICKPKKINAAINKCWRNL 658


>gi|302760727|ref|XP_002963786.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
 gi|300169054|gb|EFJ35657.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
          Length = 432

 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 117/351 (33%), Positives = 175/351 (49%), Gaps = 40/351 (11%)

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLP-SEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           + + G   +A QL  E      LP S  TY VL+ G C  SDL+ A  +L+ M  +    
Sbjct: 1   MVRAGSHNQALQLFRENP--CQLPASSVTYNVLIRGFCNASDLDAAFSLLREMDVEGMQC 58

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQ-TQCQPDVITLNTVINGFCKMGRIEEALKV 301
             R  +I L+ LC      + L      L+    QPDV++  T+ING CK+GR++ A  +
Sbjct: 59  NDRTTSIILQGLCRCGRVAQALEHFDASLELAHAQPDVVSYTTLINGLCKLGRVDAAFDL 118

Query: 302 LNDMVAGKFC-----------------------------------APDAVTFTTIIFGLL 326
              MVA   C                                   APD VT+ T++  L 
Sbjct: 119 FRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAARAVITEARKRDFAPDVVTYNTLMAALF 178

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
            +GR+ EAL    Q M + GY P +V++NA++ GL R RR+ +A EVFN M+      + 
Sbjct: 179 QLGRVDEALATFTQ-MTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNL 237

Query: 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE 446
            TY++VIDGLC+S+QLDEA++  D +V      D   Y  ++ G   +G++  A+  L  
Sbjct: 238 VTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRR 297

Query: 447 LVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           +V  G  P++V Y VVID  CK+    +A++I RE+  N  +P+ VT+  L
Sbjct: 298 MVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSAL 348



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 127/460 (27%), Positives = 211/460 (45%), Gaps = 46/460 (10%)

Query: 41  RTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDL 100
           R G  + A ++F E   C +  +S+TY+VL+RG     D++ A    F L   M + E +
Sbjct: 3   RAGSHNQALQLFRE-NPCQLPASSVTYNVLIRGFCNASDLDAA----FSLLREM-DVEGM 56

Query: 101 SVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASR 160
             N+   + ++  LCR G V +           +  +      H                
Sbjct: 57  QCNDRTTSIILQGLCRCGRVAQAL---------EHFDASLELAHA--------------- 92

Query: 161 VVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL-PSEHTYKVLVEGL 219
                      P +VSY ++++GLCK G    A+ L  + +  G   P+  TY  LV+GL
Sbjct: 93  ----------QPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVDGL 142

Query: 220 CGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDV 279
           C +  L+ AR V+     +         N  + AL  +    E L     M +    P +
Sbjct: 143 CKQDRLDAARAVITEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTL 202

Query: 280 ITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLY 339
           ++ N +I G C+  R+ +AL+V N+M+   F  P+ VT++ +I GL    ++ EA  LL 
Sbjct: 203 VSFNAIITGLCRARRLADALEVFNEMIDRDF-HPNLVTYSVVIDGLCKSDQLDEAQQLLD 261

Query: 340 QVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCES 399
           + M   G  P +V Y  ++ G     R++ A  +   M+  G + D  TY +VID LC+ 
Sbjct: 262 R-MVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKV 320

Query: 400 NQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCY 459
            ++D+A   + ++V      +   Y+A+I G CR+ ++ E    + E+      PN+V Y
Sbjct: 321 GRVDDAHEIFRELVANKCSPNVVTYSALIGGYCRASRVDEGGKVMREM---ACRPNVVTY 377

Query: 460 NVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
           N +I G   +    EAY + REM + G  PDA T+R L +
Sbjct: 378 NTMIWGLSMVDRNEEAYGMFREMSECGFVPDARTYRGLKR 417



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 112/431 (25%), Positives = 201/431 (46%), Gaps = 45/431 (10%)

Query: 30  VSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFK 89
           V+Y  LI G+C   ++D A+ +  EM   G+  N  T S++++G+ R   V +A      
Sbjct: 26  VTYNVLIRGFCNASDLDAAFSLLREMDVEGMQCNDRTTSIILQGLCRCGRVAQALEHFDA 85

Query: 90  LWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDM-PQGKSVNEEFACGHMIDS 148
             E    + D+     ++  L++ LC+ G V+  F +   M   G      F    ++D 
Sbjct: 86  SLELAHAQPDV----VSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVDG 141

Query: 149 LCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPS 208
           LC+  R   A  V+   RKR   P +V+YN+++  L + G    A     +  + GY+P+
Sbjct: 142 LCKQDRLDAARAVITEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPT 201

Query: 209 EHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLV 268
             ++  ++ GLC      +AR++                              + L V  
Sbjct: 202 LVSFNAIITGLC------RARRL-----------------------------ADALEVFN 226

Query: 269 FMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNV 328
            M+     P+++T + VI+G CK  +++EA ++L+ MV+ + C PD V +T ++ G    
Sbjct: 227 EMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVS-EGCRPDLVAYTPLVLGFSAA 285

Query: 329 GRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTT 388
           GR+  AL LL +++ Q G  P +VTY  V+  L ++ RV++A E+F  ++      +  T
Sbjct: 286 GRLDSALGLLRRMVSQ-GCIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVT 344

Query: 389 YAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELV 448
           Y+ +I G C ++++DE  +   ++    N+     Y  MI GL    +  EA     E+ 
Sbjct: 345 YSALIGGYCRASRVDEGGKVMREMACRPNV---VTYNTMIWGLSMVDRNEEAYGMFREMS 401

Query: 449 DSGVTPNIVCY 459
           + G  P+   Y
Sbjct: 402 ECGFVPDARTY 412



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 116/388 (29%), Positives = 182/388 (46%), Gaps = 47/388 (12%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHV-PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCG-VL 61
           LC   RV +A + F       H  P+VVSYTTLI+G C+ G +D A+ +F +M   G   
Sbjct: 70  LCRCGRVAQALEHFDASLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCR 129

Query: 62  PNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVN 121
           PN+ TY+ LV G+ +   ++ A  ++ +  +R     D + +   +  L+ +L + G V+
Sbjct: 130 PNAFTYNALVDGLCKQDRLDAARAVITEARKR-----DFAPDVVTYNTLMAALFQLGRVD 184

Query: 122 EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
           E       M +   V    +   +I  LCR+ R   A  V   M  R   P+LV+Y+ ++
Sbjct: 185 EALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVI 244

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
            GLCK      A QLL+  +  G  P    Y  LV G      L+ A  +L+ M+S+   
Sbjct: 245 DGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQG-- 302

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
                                            C PDV+T   VI+  CK+GR+++A ++
Sbjct: 303 ---------------------------------CIPDVVTYTVVIDKLCKVGRVDDAHEI 329

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
             ++VA K C+P+ VT++ +I G     R+ E      +VM +    P +VTYN ++ GL
Sbjct: 330 FRELVANK-CSPNVVTYSALIGGYCRASRVDEG----GKVMREMACRPNVVTYNTMIWGL 384

Query: 362 FRLRRVEEAKEVFNCMLGIGVVADSTTY 389
             + R EEA  +F  M   G V D+ TY
Sbjct: 385 SMVDRNEEAYGMFREMSECGFVPDARTY 412



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 74/318 (23%), Positives = 138/318 (43%), Gaps = 44/318 (13%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   R+  A  +  + + R   P+VV+Y TL+    + G +D A   F +M   G 
Sbjct: 139 VDGLCKQDRLDAARAVITEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGY 198

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P  ++++ ++ G+ R R +  A  +  ++ +R     D   N   ++ ++D LC+   +
Sbjct: 199 VPTLVSFNAIITGLCRARRLADALEVFNEMIDR-----DFHPNLVTYSVVIDGLCKSDQL 253

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E  ++ + M       +  A   ++     +GR   A  ++  M  +G  P +V+Y  +
Sbjct: 254 DEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVV 313

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +  LCK G    A+++  E +     P+  TY  L+ G C  S +++  KV++ M     
Sbjct: 314 IDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCRASRVDEGGKVMREM----- 368

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                             C+P+V+T NT+I G   + R EEA  
Sbjct: 369 ---------------------------------ACRPNVVTYNTMIWGLSMVDRNEEAYG 395

Query: 301 VLNDMVAGKFCAPDAVTF 318
           +  +M    F  PDA T+
Sbjct: 396 MFREMSECGF-VPDARTY 412


>gi|302806555|ref|XP_002985027.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
 gi|300147237|gb|EFJ13902.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
          Length = 443

 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 125/447 (27%), Positives = 217/447 (48%), Gaps = 44/447 (9%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D L    ++ EA  L   + + G  P + +Y  L++G C+ G ++ A  +  ++   G 
Sbjct: 41  VDWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGC 100

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TY+ L+ G+ + +    A    +KL++ M     L+++   +  L+  L + G +
Sbjct: 101 TPDVVTYTSLIDGLGKKKRSFEA----YKLFKEM-ASRGLALDTVCYTALIRGLLQAGKI 155

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +   + + M     V +      MID LC++GR   A R+   M  RGL P+ V Y+++
Sbjct: 156 PQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSAL 215

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +HGLCK      A ++L +  +    P   TY +L++GLC   D+  AR           
Sbjct: 216 IHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVAAARAFFD------- 268

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                        ML+  C+PDV T N +I+GFCK G  + A  
Sbjct: 269 ----------------------------EMLEAGCKPDVYTYNILISGFCKAGNTDAACG 300

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           V +DM + + C+P+ VT+ T+I GL    ++ +A +L YQ M +RG  P    Y++++ G
Sbjct: 301 VFDDMSSSR-CSPNVVTYGTLISGLCKRRQLTKA-SLYYQHMKERGCPPDSFVYSSLVDG 358

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L +  ++E    +F+ M   G VA+S T   +I  LC++N++DEA   ++ I      H 
Sbjct: 359 LCKSGKLEGGCMLFDEMERSG-VANSQTRTRLIFHLCKANRVDEAVSLFNAIRKEGMPHP 417

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYEL 447
            Y Y ++I  L +SGK++E      E+
Sbjct: 418 -YAYNSIISALIKSGKVNEGQAVYQEM 443



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 109/399 (27%), Positives = 191/399 (47%), Gaps = 3/399 (0%)

Query: 107 FANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMR 166
           F+ L++ L + G + +   +A++        +      ++D L ++ +   A  ++  + 
Sbjct: 2   FSILINGLVKAGMLIQAHSLAQETTTNGCTIDIHTYTTIVDWLAKNKKIQEAVALMEKIT 61

Query: 167 KRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLE 226
             G TP++ +YN++++GLCK G    A  LL + +  G  P   TY  L++GL  +    
Sbjct: 62  ANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKKKRSF 121

Query: 227 KARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVI 286
           +A K+ + M S+     T      +R L       +  +V   M    C PDV+TL+T+I
Sbjct: 122 EAYKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMI 181

Query: 287 NGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
           +G CK GRI  A+++   M A +  AP+ V ++ +I GL    ++  AL +L Q M +  
Sbjct: 182 DGLCKAGRIGAAVRIFKSMEA-RGLAPNEVVYSALIHGLCKARKMDCALEMLAQ-MKKAF 239

Query: 347 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
            +P  +TYN ++ GL +   V  A+  F+ ML  G   D  TY I+I G C++   D A 
Sbjct: 240 CTPDTITYNILIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAAC 299

Query: 407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466
             +DD+       +   Y  +I GLC+  ++ +A  +   + + G  P+   Y+ ++DG 
Sbjct: 300 GVFDDMSSSRCSPNVVTYGTLISGLCKRRQLTKASLYYQHMKERGCPPDSFVYSSLVDGL 359

Query: 467 CKLSMKREAYQILREMRKNGL-NPDAVTWRILDKLHGNR 504
           CK         +  EM ++G+ N    T  I      NR
Sbjct: 360 CKSGKLEGGCMLFDEMERSGVANSQTRTRLIFHLCKANR 398



 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 96/331 (29%), Positives = 160/331 (48%), Gaps = 37/331 (11%)

Query: 176 SYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM 235
           +++ +++GL K G  ++A+ L +E    G     HTY  +V+ L     +++A  +++ +
Sbjct: 1   TFSILINGLVKAGMLIQAHSLAQETTTNGCTIDIHTYTTIVDWLAKNKKIQEAVALMEKI 60

Query: 236 LSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 295
            +                                     C P + T N ++NG CKMGR+
Sbjct: 61  TANG-----------------------------------CTPTIATYNALLNGLCKMGRL 85

Query: 296 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN 355
           EEA+ +L  +V    C PD VT+T++I GL    R  EA  L ++ M  RG +   V Y 
Sbjct: 86  EEAIDLLRKIVDNG-CTPDVVTYTSLIDGLGKKKRSFEAYKL-FKEMASRGLALDTVCYT 143

Query: 356 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP 415
           A++RGL +  ++ +A  V+  M   G V D  T + +IDGLC++ ++  A R +  +   
Sbjct: 144 ALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEAR 203

Query: 416 SNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREA 475
               +  VY+A+I GLC++ K+  A+  L ++  +  TP+ + YN++IDG CK      A
Sbjct: 204 GLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVAAA 263

Query: 476 YQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
                EM + G  PD  T+ IL       GN
Sbjct: 264 RAFFDEMLEAGCKPDVYTYNILISGFCKAGN 294



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 116/480 (24%), Positives = 213/480 (44%), Gaps = 47/480 (9%)

Query: 6   GLSRVG---EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           GL + G   +AH L  +  + G   ++ +YTT++    +  ++  A  + +++   G  P
Sbjct: 8   GLVKAGMLIQAHSLAQETTTNGCTIDIHTYTTIVDWLAKNKKIQEAVALMEKITANGCTP 67

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
              TY+ L+ G+ +   +E A  L+ K+ +        + +   + +L+D L ++    E
Sbjct: 68  TIATYNALLNGLCKMGRLEEAIDLLRKIVD-----NGCTPDVVTYTSLIDGLGKKKRSFE 122

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
            +++ ++M       +      +I  L ++G+   AS V   M  +G  P +V+ ++++ 
Sbjct: 123 AYKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMID 182

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           GLCK G    A ++ +     G  P+E  Y  L+ GLC      KARK+           
Sbjct: 183 GLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLC------KARKM----------- 225

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
                                L +L  M +  C PD IT N +I+G CK G +  A    
Sbjct: 226 ------------------DCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVAAARAFF 267

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
           ++M+    C PD  T+  +I G    G    A  +   +   R  SP +VTY  ++ GL 
Sbjct: 268 DEMLEAG-CKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSR-CSPNVVTYGTLISGLC 325

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
           + R++ +A   +  M   G   DS  Y+ ++DGLC+S +L+     +D++   S + ++ 
Sbjct: 326 KRRQLTKASLYYQHMKERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEM-ERSGVANSQ 384

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
               +I  LC++ ++ EAV     +   G+ P+   YN +I    K     E   + +EM
Sbjct: 385 TRTRLIFHLCKANRVDEAVSLFNAIRKEGM-PHPYAYNSIISALIKSGKVNEGQAVYQEM 443



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 63/121 (52%)

Query: 388 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYEL 447
           T++I+I+GL ++  L +A     +        D + Y  ++  L ++ KI EAV  + ++
Sbjct: 1   TFSILINGLVKAGMLIQAHSLAQETTTNGCTIDIHTYTTIVDWLAKNKKIQEAVALMEKI 60

Query: 448 VDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGND 507
             +G TP I  YN +++G CK+    EA  +LR++  NG  PD VT+  L    G +   
Sbjct: 61  TANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKKKRS 120

Query: 508 F 508
           F
Sbjct: 121 F 121


>gi|297837161|ref|XP_002886462.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297332303|gb|EFH62721.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 550

 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 118/479 (24%), Positives = 235/479 (49%), Gaps = 42/479 (8%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           ++ +A  LF +M      P++V +  L+    +  + DV   +  +M   G+  +  T++
Sbjct: 65  KLHDAINLFREMVKTRPFPSIVDFNRLLSAIVKMKKYDVVISLGKKMEVLGIRNDLYTFN 124

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
           +++        V  A  ++ K+ +   E + +++      +LV+  CR   V++   + +
Sbjct: 125 IVINCFCCCFQVSLALSVLGKMLKLGYEPDRVTI-----GSLVNGFCRRNRVSDAVSLVD 179

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
            M +     +  A   +IDSLC++ R + A      + ++G+ P++V+Y ++V+GLC  G
Sbjct: 180 KMVEIGYRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSG 239

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
               A +LL + I+    P+  TY  L++       + +A+++ + M+            
Sbjct: 240 RWNDAARLLRDMIKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMV------------ 287

Query: 249 IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 308
                                  +    PD++T +++ING C   RI+EA ++  D++  
Sbjct: 288 -----------------------RMSIDPDIVTYSSLINGLCLHDRIDEANQMF-DLMVS 323

Query: 309 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE 368
           K C PD V++ T+I G     R+++ + L ++ M QRG     VTYN +++G F++  V+
Sbjct: 324 KGCFPDVVSYNTLINGFCKAKRVEDGMKL-FRKMSQRGLVNNTVTYNTLIQGFFQVGDVD 382

Query: 369 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI 428
           +A+E F+ M   GV  D  TY I++ GLC++  L++A   ++D+       D   Y  +I
Sbjct: 383 KAQEFFSQMDSFGVSPDIWTYNILLGGLCDNGLLEKALVIFEDMQKSEMDLDIVTYTTVI 442

Query: 429 KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
           +G+C++GK+ +A      L   G+ P+IV Y  ++ G C   ++ E   +  +M++ GL
Sbjct: 443 QGMCKTGKVEDAWGLFCSLSLKGLKPDIVTYTTMMSGLCTKGLQHEVEALYTKMKQEGL 501



 Score =  164 bits (416), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 116/436 (26%), Positives = 203/436 (46%), Gaps = 42/436 (9%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M+  G   ++ ++  +I+ +C   ++ +A  V  +M   G  P+ +T   LV G  R   
Sbjct: 111 MEVLGIRNDLYTFNIVINCFCCCFQVSLALSVLGKMLKLGYEPDRVTIGSLVNGFCRRNR 170

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
           V  A  L+ K+ E +    D+   NA    ++DSLC+   VN+     +++ +       
Sbjct: 171 VSDAVSLVDKMVE-IGYRPDIVAYNA----IIDSLCKTRRVNDALDFFKEIGRKGIRPNV 225

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
                +++ LC SGR + A+R++  M KR +TP++++Y++++    K+G  + A ++ EE
Sbjct: 226 VTYTALVNGLCNSGRWNDAARLLRDMIKRKITPNVITYSALLDAFVKNGKVLEAKEIFEE 285

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
            ++    P   TY  L+ GLC    +++A ++   M+SK                     
Sbjct: 286 MVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSK--------------------- 324

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
                          C PDV++ NT+INGFCK  R+E+ +K+   M + +    + VT+ 
Sbjct: 325 --------------GCFPDVVSYNTLINGFCKAKRVEDGMKLFRKM-SQRGLVNNTVTYN 369

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
           T+I G   VG + +A     Q M   G SP I TYN +L GL     +E+A  +F  M  
Sbjct: 370 TLIQGFFQVGDVDKAQEFFSQ-MDSFGVSPDIWTYNILLGGLCDNGLLEKALVIFEDMQK 428

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
             +  D  TY  VI G+C++ ++++A   +  +       D   Y  M+ GLC  G  HE
Sbjct: 429 SEMDLDIVTYTTVIQGMCKTGKVEDAWGLFCSLSLKGLKPDIVTYTTMMSGLCTKGLQHE 488

Query: 440 AVHFLYELVDSGVTPN 455
                 ++   G+  N
Sbjct: 489 VEALYTKMKQEGLMKN 504



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 113/452 (25%), Positives = 207/452 (45%), Gaps = 46/452 (10%)

Query: 48  AYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNA-- 105
           A  +F EM      P+ + ++ L+  +++ +  +    ++  L ++M   E L + N   
Sbjct: 69  AINLFREMVKTRPFPSIVDFNRLLSAIVKMKKYD----VVISLGKKM---EVLGIRNDLY 121

Query: 106 AFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVM 165
            F  +++  C    V+    +   M +     +    G +++  CR  R   A  +V  M
Sbjct: 122 TFNIVINCFCCCFQVSLALSVLGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKM 181

Query: 166 RKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDL 225
            + G  P +V+YN+I+  LCK      A    +E  + G  P+  TY  LV GLC     
Sbjct: 182 VEIGYRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSGRW 241

Query: 226 EKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTV 285
             A ++L+ M+ +K                                     P+VIT + +
Sbjct: 242 NDAARLLRDMIKRK-----------------------------------ITPNVITYSAL 266

Query: 286 INGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQR 345
           ++ F K G++ EA ++  +MV      PD VT++++I GL    RI EA N ++ +M  +
Sbjct: 267 LDAFVKNGKVLEAKEIFEEMVRMSI-DPDIVTYSSLINGLCLHDRIDEA-NQMFDLMVSK 324

Query: 346 GYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA 405
           G  P +V+YN ++ G  + +RVE+  ++F  M   G+V ++ TY  +I G  +   +D+A
Sbjct: 325 GCFPDVVSYNTLINGFCKAKRVEDGMKLFRKMSQRGLVNNTVTYNTLIQGFFQVGDVDKA 384

Query: 406 KRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDG 465
           + F+  +       D + Y  ++ GLC +G + +A+    ++  S +  +IV Y  VI G
Sbjct: 385 QEFFSQMDSFGVSPDIWTYNILLGGLCDNGLLEKALVIFEDMQKSEMDLDIVTYTTVIQG 444

Query: 466 ACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            CK     +A+ +   +   GL PD VT+  +
Sbjct: 445 MCKTGKVEDAWGLFCSLSLKGLKPDIVTYTTM 476



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 92/358 (25%), Positives = 168/358 (46%), Gaps = 7/358 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C   +V  A  +   M   G+ P+ V+  +L++G+CR   +  A  + D+M   G  P+
Sbjct: 130 FCCCFQVSLALSVLGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYRPD 189

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            + Y+ ++  + +TR V  A +  FK   R    + +  N   +  LV+ LC  G  N+ 
Sbjct: 190 IVAYNAIIDSLCKTRRVNDA-LDFFKEIGR----KGIRPNVVTYTALVNGLCNSGRWNDA 244

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            R+  DM + K          ++D+  ++G+   A  +   M +  + P +V+Y+S+++G
Sbjct: 245 ARLLRDMIKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVTYSSLING 304

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LC H     A Q+ +  +  G  P   +Y  L+ G C    +E   K+ + M  +  V+ 
Sbjct: 305 LCLHDRIDEANQMFDLMVSKGCFPDVVSYNTLINGFCKAKRVEDGMKLFRKMSQRGLVNN 364

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
           T   N  ++    + +  +       M      PD+ T N ++ G C  G +E+AL +  
Sbjct: 365 TVTYNTLIQGFFQVGDVDKAQEFFSQMDSFGVSPDIWTYNILLGGLCDNGLLEKALVIFE 424

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
           DM   +    D VT+TT+I G+   G++++A   L+  +  +G  P IVTY  ++ GL
Sbjct: 425 DMQKSEM-DLDIVTYTTVIQGMCKTGKVEDAWG-LFCSLSLKGLKPDIVTYTTMMSGL 480



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 92/348 (26%), Positives = 173/348 (49%), Gaps = 4/348 (1%)

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
           R  + H A  +   M K    PS+V +N ++  + K         L ++    G     +
Sbjct: 62  RDIKLHDAINLFREMVKTRPFPSIVDFNRLLSAIVKMKKYDVVISLGKKMEVLGIRNDLY 121

Query: 211 TYKVLVEGLCGESDLEKARKVLQFMLS-KKDVDRTRICNIYLRALCLIKNPTELLNVLVF 269
           T+ +++   C    +  A  VL  ML    + DR  I ++ +   C     ++ ++++  
Sbjct: 122 TFNIVINCFCCCFQVSLALSVLGKMLKLGYEPDRVTIGSL-VNGFCRRNRVSDAVSLVDK 180

Query: 270 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG 329
           M++   +PD++  N +I+  CK  R+ +AL    + +  K   P+ VT+T ++ GL N G
Sbjct: 181 MVEIGYRPDIVAYNAIIDSLCKTRRVNDALDFFKE-IGRKGIRPNVVTYTALVNGLCNSG 239

Query: 330 RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTY 389
           R  +A  LL   M +R  +P ++TY+A+L    +  +V EAKE+F  M+ + +  D  TY
Sbjct: 240 RWNDAARLLRD-MIKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVTY 298

Query: 390 AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449
           + +I+GLC  +++DEA + +D +V      D   Y  +I G C++ ++ + +    ++  
Sbjct: 299 SSLINGLCLHDRIDEANQMFDLMVSKGCFPDVVSYNTLINGFCKAKRVEDGMKLFRKMSQ 358

Query: 450 SGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            G+  N V YN +I G  ++    +A +   +M   G++PD  T+ IL
Sbjct: 359 RGLVNNTVTYNTLIQGFFQVGDVDKAQEFFSQMDSFGVSPDIWTYNIL 406



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 99/350 (28%), Positives = 166/350 (47%), Gaps = 21/350 (6%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C  +RV +A  L   M   G+ P++V+Y  +I   C+T  ++ A   F E+   G+ PN
Sbjct: 165 FCRRNRVSDAVSLVDKMVEIGYRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPN 224

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY+ LV G+  +     A  L+  + +R      ++ N   ++ L+D+  + G V E 
Sbjct: 225 VVTYTALVNGLCNSGRWNDAARLLRDMIKR-----KITPNVITYSALLDAFVKNGKVLEA 279

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             I E+M +     +      +I+ LC   R   A+++  +M  +G  P +VSYN++++G
Sbjct: 280 KEIFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCFPDVVSYNTLING 339

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK        +L  +  Q G + +  TY  L++G     D++KA++    M S      
Sbjct: 340 FCKAKRVEDGMKLFRKMSQRGLVNNTVTYNTLIQGFFQVGDVDKAQEFFSQMDSFGVSPD 399

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               NI L  LC      + L +   M +++   D++T  TVI G CK G++E+A     
Sbjct: 400 IWTYNILLGGLCDNGLLEKALVIFEDMQKSEMDLDIVTYTTVIQGMCKTGKVEDAW---- 455

Query: 304 DMVAGKFCA-------PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
               G FC+       PD VT+TT++ GL   G +Q  +  LY  M Q G
Sbjct: 456 ----GLFCSLSLKGLKPDIVTYTTMMSGLCTKG-LQHEVEALYTKMKQEG 500



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 122/238 (51%), Gaps = 13/238 (5%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   R+ EA+++F  M S+G  P+VVSY TLI+G+C+   ++   K+F +M   G+
Sbjct: 302 INGLCLHDRIDEANQMFDLMVSKGCFPDVVSYNTLINGFCKAKRVEDGMKLFRKMSQRGL 361

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           + N++TY+ L++G  +  DV++A    F   +      D+   N     L+  LC  G +
Sbjct: 362 VNNTVTYNTLIQGFFQVGDVDKAQEF-FSQMDSFGVSPDIWTYNI----LLGGLCDNGLL 416

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +   I EDM + +   +      +I  +C++G+   A  +   +  +GL P +V+Y ++
Sbjct: 417 EKALVIFEDMQKSEMDLDIVTYTTVIQGMCKTGKVEDAWGLFCSLSLKGLKPDIVTYTTM 476

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLC-GESDLEKARKVLQFMLS 237
           + GLC  G       L  +  Q G + ++         LC G+ D+  + ++++ MLS
Sbjct: 477 MSGLCTKGLQHEVEALYTKMKQEGLMKNDSM-------LCLGDGDITISAELIKKMLS 527


>gi|296086456|emb|CBI32045.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 110/391 (28%), Positives = 206/391 (52%), Gaps = 7/391 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   +V EA ++  +M S G  P+ V YTTLI G+C+ G +  AY++FDEM+   + P+
Sbjct: 233 LCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPD 292

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY+ ++ G+ +T  V  A+ L  ++  +  E ++++     +  L+D  C+EG + E 
Sbjct: 293 FITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVT-----YTALIDGYCKEGKMKEA 347

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           F +   M Q            + D LC+ G    A+ +++ M ++GL  ++ +YNS+V+G
Sbjct: 348 FSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNG 407

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LCK G   +A +L+++    G+ P   TY  L++  C   ++ +A ++L+ ML ++    
Sbjct: 408 LCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPT 467

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               N+ +   C+     +   +L +ML+    P+  T N++I  +C    +    ++  
Sbjct: 468 VVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYR 527

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            M A K   PD  T+  +I G      ++EA   L++ M  +G++  + +YNA+++G ++
Sbjct: 528 GMCA-KGVVPDGNTYNILIKGHCKARNMKEAW-FLHRDMVGKGFNLTVSSYNALIKGFYK 585

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVID 394
            ++  EA+E+F  M   G+VAD   Y I  D
Sbjct: 586 RKKFLEARELFEQMRREGLVADREIYNIFAD 616



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 126/482 (26%), Positives = 226/482 (46%), Gaps = 18/482 (3%)

Query: 35  LIHGYCRTGEMDV----AYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD---VERANVLM 87
           LI  +     +DV    A K+FD+M + G+L +  + ++ +  +    D   +      +
Sbjct: 148 LIQDFWVNPNLDVGVSFARKLFDKMLNYGLLISVDSCNLFISHLSEDLDGIKIALKGEWV 207

Query: 88  FKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMID 147
            KL E M + + L  N   +  ++  LC+ G V E  R+  +M       +      +ID
Sbjct: 208 LKLIEEM-QIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLID 266

Query: 148 SLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLP 207
             C+ G    A R+   M+KR ++P  ++Y +++ GLC+ G  M A +L  E +     P
Sbjct: 267 GFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEP 326

Query: 208 SEHTYKVLVEGLCGESDLEKA----RKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTEL 263
            E TY  L++G C E  +++A     ++LQ  L+   V  T + +     LC        
Sbjct: 327 DEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALAD----GLCKCGEVDTA 382

Query: 264 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF 323
             +L  M +   + ++ T N+++NG CK G I++A+K++ DM    F  PDAVT+TT++ 
Sbjct: 383 NELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGF-HPDAVTYTTLMD 441

Query: 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 383
                  +  A  LL Q++  R   P +VT+N ++ G      +E+ +++   ML  G++
Sbjct: 442 AYCKSREMVRAHELLRQML-DRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIM 500

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
            ++TTY  +I   C  N +      +  +     + D   Y  +IKG C++  + EA   
Sbjct: 501 PNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFL 560

Query: 444 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGN 503
             ++V  G    +  YN +I G  K     EA ++  +MR+ GL  D   + I   ++ +
Sbjct: 561 HRDMVGKGFNLTVSSYNALIKGFYKRKKFLEARELFEQMRREGLVADREIYNIFADINYD 620

Query: 504 RG 505
            G
Sbjct: 621 EG 622



 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 97/347 (27%), Positives = 169/347 (48%), Gaps = 37/347 (10%)

Query: 160 RVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGL 219
           +++  M+ +GL P+  +YN ++  LCK G    A ++L E I  G  P    Y  L++G 
Sbjct: 209 KLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGF 268

Query: 220 CGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDV 279
           C   ++  A ++   M  +K                                     PD 
Sbjct: 269 CKLGNVSSAYRLFDEMQKRK-----------------------------------ISPDF 293

Query: 280 ITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLY 339
           IT   VI G C+ GR+ EA K+ ++MV  +   PD VT+T +I G    G+++EA +L  
Sbjct: 294 ITYTAVICGLCQTGRVMEADKLFHEMVCKRL-EPDEVTYTALIDGYCKEGKMKEAFSLHN 352

Query: 340 QVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCES 399
           Q++ Q G +P IVTY A+  GL +   V+ A E+ + M   G+  +  TY  +++GLC++
Sbjct: 353 QML-QMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKA 411

Query: 400 NQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCY 459
             +D+A +   D+       D   Y  ++   C+S ++  A   L +++D  + P +V +
Sbjct: 412 GNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTF 471

Query: 460 NVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           NV+++G C   M  +  ++L+ M + G+ P+A T+  L K +  R N
Sbjct: 472 NVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNN 518



 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 120/453 (26%), Positives = 224/453 (49%), Gaps = 19/453 (4%)

Query: 15  KLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGV 74
           KL  +M+ +G  PN  +Y  +I   C+TG++  A +V  EM   G+ P+ + Y+ L+ G 
Sbjct: 209 KLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGF 268

Query: 75  LRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGK 134
            +  +V  A    ++L++ M++ + +S +   +  ++  LC+ G V E  ++  +M   +
Sbjct: 269 CKLGNVSSA----YRLFDEMQKRK-ISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKR 323

Query: 135 SVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAY 194
              +E     +ID  C+ G+   A  +   M + GLTP++V+Y ++  GLCK G    A 
Sbjct: 324 LEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTAN 383

Query: 195 QLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM----LSKKDVDRTRICNIY 250
           +LL E  + G   + +TY  LV GLC   ++++A K+++ M         V  T + + Y
Sbjct: 384 ELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAY 443

Query: 251 LRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKF 310
            ++  +++   ELL     ML  + QP V+T N ++NGFC  G +E+  K+L  M+  K 
Sbjct: 444 CKSREMVR-AHELLRQ---MLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLE-KG 498

Query: 311 CAPDAVTFTTII--FGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE 368
             P+A T+ ++I  + + N  R   A   +Y+ M  +G  P   TYN +++G  + R ++
Sbjct: 499 IMPNATTYNSLIKQYCIRNNMR---ATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMK 555

Query: 369 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI 428
           EA  +   M+G G     ++Y  +I G  +  +  EA+  ++ +     + D  +Y    
Sbjct: 556 EAWFLHRDMVGKGFNLTVSSYNALIKGFYKRKKFLEARELFEQMRREGLVADREIYNIFA 615

Query: 429 KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNV 461
                 GK+   +    E ++  +  +I   N 
Sbjct: 616 DINYDEGKMELTLELCDEAIEKCLVGDIQTKNT 648



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/291 (27%), Positives = 139/291 (47%), Gaps = 10/291 (3%)

Query: 207 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 266
           PS     ++ +      DL+ ARK++Q      ++D   +   + R L       ++LN 
Sbjct: 124 PSLEARCIVAQIATASKDLKMARKLIQDFWVNPNLD---VGVSFARKLF-----DKMLNY 175

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
            + +    C   +  L+  ++G     + E  LK++ +M   K   P+  T+  +I  L 
Sbjct: 176 GLLISVDSCNLFISHLSEDLDGIKIALKGEWVLKLIEEMQI-KGLKPNPYTYNGVILLLC 234

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
             G++ EA  +L +++ + G +P  V Y  ++ G  +L  V  A  +F+ M    +  D 
Sbjct: 235 KTGKVAEAERVLREMISE-GIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDF 293

Query: 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE 446
            TY  VI GLC++ ++ EA + + ++V      D   Y A+I G C+ GK+ EA     +
Sbjct: 294 ITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQ 353

Query: 447 LVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           ++  G+TPNIV Y  + DG CK      A ++L EM + GL  +  T+  L
Sbjct: 354 MLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSL 404


>gi|356536611|ref|XP_003536830.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 578

 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 135/501 (26%), Positives = 236/501 (47%), Gaps = 37/501 (7%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C    + +A  LF  M     +P++V +T ++    +      A  ++  M + GV+P +
Sbjct: 30  CKFDSIDDAVALFHRMVDMHPLPSIVEFTKILGTIAKMRYYATAIDLYTLMEYKGVVPFT 89

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           +T+++L+        ++ A  +M K+ +          N   F  L+   C    + +  
Sbjct: 90  VTFNILINCFCHMGQMDFAFSVMGKILKW-----GCRPNVVTFTTLMKGFCVNDKMLDAL 144

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRS--GRNHGASRVVYVMRKRGLT-PSLVSYNSIV 181
            I ++M   +   ++   G +I+ LC+S  G+   A +++  M +R L  P+L+ YN++V
Sbjct: 145 YIYDEMVARRIRFDDVLYGTLINGLCKSKIGKPRAAVQLLQKMEERQLVKPNLIMYNTVV 204

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
           HGLCK G    A  L  + I  G  P   TY  L+ GLC     ++   +L        V
Sbjct: 205 HGLCKDGNINEARVLCSKMIVQGIFPDIFTYSSLIYGLCRAGQRKEVTSLLNGFCLNNKV 264

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
           D  R                EL NV   M++   Q D+I  N ++NG+C   ++ EA K+
Sbjct: 265 DEAR----------------ELFNV---MIERGEQHDIINYNILMNGYCLNNKVGEARKL 305

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
            + MV  +   PD +T+T ++ G   + ++ EA N L+  M +RG  P + +YN +++G 
Sbjct: 306 FHMMVE-RGEQPDTITYTILMHGYCLIDKVDEARN-LFHGMIERGLVPDVWSYNILIKGY 363

Query: 362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVW----PSN 417
            +  RV EA  +   M    +V +  TY  V+DGLC+S  + +A +  D++ +    P +
Sbjct: 364 CKFERVGEAMNLLEDMFLKNLVPNIITYNSVVDGLCKSGGILDAWKLVDEMHYCCQPPPD 423

Query: 418 IHDNYVYAAMIKGLCRSGKIHEAVHFLYELV-DSGVTPNIVCYNVVIDGACKLSMKREAY 476
           +     Y  +++ LCR   + +A+ F   L+ +    PN+  YN++I G CK     EA 
Sbjct: 424 VT---TYNILLESLCRIECVEKAIAFFKHLIFERSFAPNVWSYNILISGCCKNRRLDEAI 480

Query: 477 QILREMRKNGLNPDAVTWRIL 497
            +   M    L PD VT+ IL
Sbjct: 481 NLFNHMCFKNLVPDIVTYNIL 501



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 129/506 (25%), Positives = 245/506 (48%), Gaps = 26/506 (5%)

Query: 11  GEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVL 70
             A  L+  M+ +G VP  V++  LI+ +C  G+MD A+ V  ++   G  PN +T++ L
Sbjct: 71  ATAIDLYTLMEYKGVVPFTVTFNILINCFCHMGQMDFAFSVMGKILKWGCRPNVVTFTTL 130

Query: 71  VRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCRE--GYVNEVFRIAE 128
           ++G      +  A      +++ M     +  ++  +  L++ LC+   G      ++ +
Sbjct: 131 MKGFCVNDKMLDA----LYIYDEMVARR-IRFDDVLYGTLINGLCKSKIGKPRAAVQLLQ 185

Query: 129 DMPQGKSVNEEFAC-GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK- 186
            M + + V         ++  LC+ G  + A  +   M  +G+ P + +Y+S+++GLC+ 
Sbjct: 186 KMEERQLVKPNLIMYNTVVHGLCKDGNINEARVLCSKMIVQGIFPDIFTYSSLIYGLCRA 245

Query: 187 ----------HGGCM-----RAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKV 231
                     +G C+      A +L    I+ G       Y +L+ G C  + + +ARK+
Sbjct: 246 GQRKEVTSLLNGFCLNNKVDEARELFNVMIERGEQHDIINYNILMNGYCLNNKVGEARKL 305

Query: 232 LQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK 291
              M+ + +   T    I +   CLI    E  N+   M++    PDV + N +I G+CK
Sbjct: 306 FHMMVERGEQPDTITYTILMHGYCLIDKVDEARNLFHGMIERGLVPDVWSYNILIKGYCK 365

Query: 292 MGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGI 351
             R+ EA+ +L DM   K   P+ +T+ +++ GL   G I +A  L+ ++       P +
Sbjct: 366 FERVGEAMNLLEDMFL-KNLVPNIITYNSVVDGLCKSGGILDAWKLVDEMHYCCQPPPDV 424

Query: 352 VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADST-TYAIVIDGLCESNQLDEAKRFWD 410
            TYN +L  L R+  VE+A   F  ++     A +  +Y I+I G C++ +LDEA   ++
Sbjct: 425 TTYNILLESLCRIECVEKAIAFFKHLIFERSFAPNVWSYNILISGCCKNRRLDEAINLFN 484

Query: 411 DIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLS 470
            + + + + D   Y  ++  L    ++ +A+  L ++VD G++PN+  YN++I+G  K  
Sbjct: 485 HMCFKNLVPDIVTYNILLDALFNGQQLDKAIALLVQIVDQGISPNLRTYNILINGLHKGG 544

Query: 471 MKREAYQILREMRKNGLNPDAVTWRI 496
             + A +I   +   G +PD  T+ I
Sbjct: 545 RPKTAQKISLYLSIRGYHPDVKTYII 570



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 105/412 (25%), Positives = 190/412 (46%), Gaps = 60/412 (14%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGE----------------MDV 47
           LC    + EA  L   M  +G  P++ +Y++LI+G CR G+                +D 
Sbjct: 207 LCKDGNINEARVLCSKMIVQGIFPDIFTYSSLIYGLCRAGQRKEVTSLLNGFCLNNKVDE 266

Query: 48  AYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAF 107
           A ++F+ M   G   + + Y++L+ G      V  A  L   + ER ++ + ++     +
Sbjct: 267 ARELFNVMIERGEQHDIINYNILMNGYCLNNKVGEARKLFHMMVERGEQPDTIT-----Y 321

Query: 108 ANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRK 167
             L+   C    V+E   +   M +   V + ++   +I   C+  R   A  ++  M  
Sbjct: 322 TILMHGYCLIDKVDEARNLFHGMIERGLVPDVWSYNILIKGYCKFERVGEAMNLLEDMFL 381

Query: 168 RGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSE-HTYKVLVEGLCGESDLE 226
           + L P++++YNS+V GLCK GG + A++L++E       P +  TY +L+E LC    +E
Sbjct: 382 KNLVPNIITYNSVVDGLCKSGGILDAWKLVDEMHYCCQPPPDVTTYNILLESLCRIECVE 441

Query: 227 KARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVI 286
           KA    + ++ ++                                     P+V + N +I
Sbjct: 442 KAIAFFKHLIFERSF----------------------------------APNVWSYNILI 467

Query: 287 NGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
           +G CK  R++EA+ + N M   K   PD VT+  ++  L N  ++ +A+ LL Q++ Q G
Sbjct: 468 SGCCKNRRLDEAINLFNHM-CFKNLVPDIVTYNILLDALFNGQQLDKAIALLVQIVDQ-G 525

Query: 347 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE 398
            SP + TYN ++ GL +  R + A+++   +   G   D  TY  +I+ LC+
Sbjct: 526 ISPNLRTYNILINGLHKGGRPKTAQKISLYLSIRGYHPDVKTY--IINELCK 575



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/333 (25%), Positives = 156/333 (46%), Gaps = 19/333 (5%)

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
           CK      A  L    +    LPS   +  ++  +        A  +   M  K  V  T
Sbjct: 30  CKFDSIDDAVALFHRMVDMHPLPSIVEFTKILGTIAKMRYYATAIDLYTLMEYKGVVPFT 89

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
              NI +   C +       +V+  +L+  C+P+V+T  T++ GFC   ++ +AL + ++
Sbjct: 90  VTFNILINCFCHMGQMDFAFSVMGKILKWGCRPNVVTFTTLMKGFCVNDKMLDALYIYDE 149

Query: 305 MVAGKFCAPDAVTFTTIIFGLLN--VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
           MVA +    D V + T+I GL    +G+ + A+ LL ++  ++   P ++ YN V+ GL 
Sbjct: 150 MVARRI-RFDDVLYGTLINGLCKSKIGKPRAAVQLLQKMEERQLVKPNLIMYNTVVHGLC 208

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCES----------------NQLDEAK 406
           +   + EA+ + + M+  G+  D  TY+ +I GLC +                N++DEA+
Sbjct: 209 KDGNINEARVLCSKMIVQGIFPDIFTYSSLIYGLCRAGQRKEVTSLLNGFCLNNKVDEAR 268

Query: 407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466
             ++ ++     HD   Y  ++ G C + K+ EA    + +V+ G  P+ + Y +++ G 
Sbjct: 269 ELFNVMIERGEQHDIINYNILMNGYCLNNKVGEARKLFHMMVERGEQPDTITYTILMHGY 328

Query: 467 CKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
           C +    EA  +   M + GL PD  ++ IL K
Sbjct: 329 CLIDKVDEARNLFHGMIERGLVPDVWSYNILIK 361



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 142/295 (48%), Gaps = 9/295 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M+  C  ++VGEA KLF  M  RG  P+ ++YT L+HGYC   ++D A  +F  M   G+
Sbjct: 290 MNGYCLNNKVGEARKLFHMMVERGEQPDTITYTILMHGYCLIDKVDEARNLFHGMIERGL 349

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P+  +Y++L++G  +   V  A  L+  ++ +     +L  N   + ++VD LC+ G +
Sbjct: 350 VPDVWSYNILIKGYCKFERVGEAMNLLEDMFLK-----NLVPNIITYNSVVDGLCKSGGI 404

Query: 121 NEVFRIAEDMPQGKSVNEEFACGH-MIDSLCR-SGRNHGASRVVYVMRKRGLTPSLVSYN 178
            + +++ ++M        +    + +++SLCR        +   +++ +R   P++ SYN
Sbjct: 405 LDAWKLVDEMHYCCQPPPDVTTYNILLESLCRIECVEKAIAFFKHLIFERSFAPNVWSYN 464

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
            ++ G CK+     A  L         +P   TY +L++ L     L+KA  +L  ++ +
Sbjct: 465 ILISGCCKNRRLDEAINLFNHMCFKNLVPDIVTYNILLDALFNGQQLDKAIALLVQIVDQ 524

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMG 293
                 R  NI +  L     P     + +++      PDV T   +IN  CK G
Sbjct: 525 GISPNLRTYNILINGLHKGGRPKTAQKISLYLSIRGYHPDVKTY--IINELCKGG 577



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 81/303 (26%), Positives = 141/303 (46%), Gaps = 7/303 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C  ++V EA +LF  M  RG   ++++Y  L++GYC   ++  A K+F  M   G 
Sbjct: 255 LNGFCLNNKVDEARELFNVMIERGEQHDIINYNILMNGYCLNNKVGEARKLFHMMVERGE 314

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+++TY++L+ G      V+ A  L   + ER      L  +  ++  L+   C+   V
Sbjct: 315 QPDTITYTILMHGYCLIDKVDEARNLFHGMIER-----GLVPDVWSYNILIKGYCKFERV 369

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRK-RGLTPSLVSYNS 179
            E   + EDM     V        ++D LC+SG    A ++V  M       P + +YN 
Sbjct: 370 GEAMNLLEDMFLKNLVPNIITYNSVVDGLCKSGGILDAWKLVDEMHYCCQPPPDVTTYNI 429

Query: 180 IVHGLCKHGGCMRAYQLLEEGI-QFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
           ++  LC+     +A    +  I +  + P+  +Y +L+ G C    L++A  +   M  K
Sbjct: 430 LLESLCRIECVEKAIAFFKHLIFERSFAPNVWSYNILISGCCKNRRLDEAINLFNHMCFK 489

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
             V      NI L AL   +   + + +LV ++     P++ T N +ING  K GR + A
Sbjct: 490 NLVPDIVTYNILLDALFNGQQLDKAIALLVQIVDQGISPNLRTYNILINGLHKGGRPKTA 549

Query: 299 LKV 301
            K+
Sbjct: 550 QKI 552


>gi|302757529|ref|XP_002962188.1| hypothetical protein SELMODRAFT_60915 [Selaginella moellendorffii]
 gi|300170847|gb|EFJ37448.1| hypothetical protein SELMODRAFT_60915 [Selaginella moellendorffii]
          Length = 535

 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 141/504 (27%), Positives = 246/504 (48%), Gaps = 35/504 (6%)

Query: 14  HKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRH--CGVL-----PNSLT 66
           + L  +MK+RG   N  ++  ++   C   ++D A   F+      C +      P+S+T
Sbjct: 49  NALLREMKARGITSNGATHGVILSALCARRDLDKAVSYFNSRTEEACRLFEAIEAPDSVT 108

Query: 67  YSVLVRGVLRTRDVERANVLMFKLWERM---KEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           Y+ +V G+ +  + +       + +E+M   K E  L      +  LVD LC+   V   
Sbjct: 109 YTAIVDGLFKAGNYDAG----LEYYEKMVASKCEPTL----LTYTVLVDGLCKAHKVERA 160

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             + E+M +     +  A   +ID L ++GR   A ++V +M  RG  P+ V+Y SIV G
Sbjct: 161 CDVFEEMIRKGHKPDIIAYSSLIDGLSKAGRVDEARKLVDLMIARGPPPTAVAYTSIVAG 220

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LCK G    A + ++E  +    P   TY  +V G  G   +E+A  V++ M  +     
Sbjct: 221 LCKCGRIQEAVKTIQEMRRRRLRPRVDTYSFIVTGYIGMGKVEEAFAVMEEMADRDCAPD 280

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
           T    +++ AL  I    E   V   M++  C+PD+ T   +I+ FCK G +  A  VL 
Sbjct: 281 TISYTMFIEALYSIGRREEAEKVFETMVEKGCKPDMHTYGIIIDNFCKEGSMAAATHVLR 340

Query: 304 --DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
             D  A K   P+   +T I+ G +   R++EAL  LYQ + + G  P  VTYN V+  L
Sbjct: 341 LMDKAAVK---PNRYIYTMIMDGFVKSSRLEEALE-LYQRILKDGILPSTVTYNTVINAL 396

Query: 362 FRLRRVEEAKEVFNCM------LGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP 415
            +L++++EA E+   M      L   +V    TY+++I GL +    + A     +++  
Sbjct: 397 CKLKKMDEALELLREMQRRKEELEPSIV----TYSMIIHGLGKVGMEERAFDLLAEMIDN 452

Query: 416 SNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREA 475
             I D + Y ++I+ L  +GK+  A+  L E++ +G+ P+   Y  ++   C+  +   A
Sbjct: 453 GVIPDCFTYTSLIQTLAGAGKVSRAMELLEEMLKAGIFPDDHTYGTLVQILCRSDVD-AA 511

Query: 476 YQILREMRKNGLNPDAVTWRILDK 499
           + +L+EM +NG  P+  T++ ++K
Sbjct: 512 WDLLQEMMRNGHTPNEFTFKAVEK 535



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 103/394 (26%), Positives = 190/394 (48%), Gaps = 10/394 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   +V  A  +F +M  +GH P++++Y++LI G  + G +D A K+ D M   G 
Sbjct: 148 VDGLCKAHKVERACDVFEEMIRKGHKPDIIAYSSLIDGLSKAGRVDEARKLVDLMIARGP 207

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P ++ Y+ +V G+ +   ++ A   +  + E  +      V+  +F  +V      G V
Sbjct: 208 PPTAVAYTSIVAGLCKCGRIQEA---VKTIQEMRRRRLRPRVDTYSF--IVTGYIGMGKV 262

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E F + E+M       +  +    I++L   GR   A +V   M ++G  P + +Y  I
Sbjct: 263 EEAFAVMEEMADRDCAPDTISYTMFIEALYSIGRREEAEKVFETMVEKGCKPDMHTYGII 322

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +   CK G    A  +L    +    P+ + Y ++++G    S LE+A ++ Q +L    
Sbjct: 323 IDNFCKEGSMAAATHVLRLMDKAAVKPNRYIYTMIMDGFVKSSRLEEALELYQRILKDGI 382

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFML--QTQCQPDVITLNTVINGFCKMGRIEEA 298
           +  T   N  + ALC +K   E L +L  M   + + +P ++T + +I+G  K+G  E A
Sbjct: 383 LPSTVTYNTVINALCKLKKMDEALELLREMQRRKEELEPSIVTYSMIIHGLGKVGMEERA 442

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
             +L +M+      PD  T+T++I  L   G++  A+ LL +++ + G  P   TY  ++
Sbjct: 443 FDLLAEMIDNGVI-PDCFTYTSLIQTLAGAGKVSRAMELLEEML-KAGIFPDDHTYGTLV 500

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIV 392
           + L R   V+ A ++   M+  G   +  T+  V
Sbjct: 501 QILCR-SDVDAAWDLLQEMMRNGHTPNEFTFKAV 533


>gi|414590400|tpg|DAA40971.1| TPA: hypothetical protein ZEAMMB73_404079 [Zea mays]
          Length = 745

 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 136/506 (26%), Positives = 226/506 (44%), Gaps = 45/506 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +  LC   RV +A +LF +M S    P+VV+Y  LIHG+C  GE++ A K+ DEM   GV
Sbjct: 266 LKALCDAGRVKDARQLFDEMAS---APDVVTYGILIHGHCALGELENAVKLLDEMVAGGV 322

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN+  Y+                                        ++V  LC +G++
Sbjct: 323 EPNATVYT----------------------------------------SVVALLCDKGWI 342

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           ++  R+ EDM Q K + +E     ++   C  G    A R    M+++GL    V+Y ++
Sbjct: 343 SDALRVVEDMVQRKVILDEALYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTM 402

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++GLC+      A +LL+E         E TY VL++G C    + +A ++   M+ +  
Sbjct: 403 INGLCRAVELEEAEKLLQEMWARRLDVDEVTYTVLIDGYCKRGKMAEAFQMHNAMVQRGV 462

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                        LC   +      +L  M     + +  T N++ING CK G +E+A++
Sbjct: 463 TPNVVTYTALTDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLEQAMR 522

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
            + DM       PD  T+TT+I  L   G +  A +LL Q M  +G  P IVTYN ++ G
Sbjct: 523 TMADMDTACL-KPDVYTYTTLIDALCKSGDLDRAHSLL-QEMLDKGIKPTIVTYNVLMNG 580

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
                RVE  K++ + ML   +  ++ TY  ++   C  N +      +  +       +
Sbjct: 581 FCMSGRVEGGKKLLDWMLEKNIHPNAATYNSLMKQYCIENNMKSTTEIYKGMRSRDVGPN 640

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              Y  +IKG C++  + EA++F  E++  G       Y+ +I    K     EA ++  
Sbjct: 641 ENTYNILIKGHCKARNMKEALYFHDEMIQKGFRLTATSYSALIRLLNKKKKFVEARELFH 700

Query: 481 EMRKNGLNPDAVTWRILDKLHGNRGN 506
           +MRK GL  ++  +     L+ N  N
Sbjct: 701 DMRKEGLTAESDVYDFYIDLNFNEDN 726



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 110/416 (26%), Positives = 203/416 (48%), Gaps = 13/416 (3%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC    + +A ++  DM  R  + +   YTT++ G+C  G++  A + FDEM+  G+  +
Sbjct: 336 LCDKGWISDALRVVEDMVQRKVILDEALYTTVLSGFCNKGDLVSARRWFDEMQRKGLATD 395

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY+ ++ G+ R  ++E A  L+ ++W R      L V+   +  L+D  C+ G + E 
Sbjct: 396 GVTYTTMINGLCRAVELEEAEKLLQEMWARR-----LDVDEVTYTVLIDGYCKRGKMAEA 450

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           F++   M Q            + D LC+ G    A+ +++ M  +GL  +  +YNS+++G
Sbjct: 451 FQMHNAMVQRGVTPNVVTYTALTDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLING 510

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LCK G   +A + + +       P  +TY  L++ LC   DL++A  +LQ ML K     
Sbjct: 511 LCKAGYLEQAMRTMADMDTACLKPDVYTYTTLIDALCKSGDLDRAHSLLQEMLDKGIKPT 570

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               N+ +   C+         +L +ML+    P+  T N+++  +C    IE  +K   
Sbjct: 571 IVTYNVLMNGFCMSGRVEGGKKLLDWMLEKNIHPNAATYNSLMKQYC----IENNMKSTT 626

Query: 304 DMVAG---KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           ++  G   +   P+  T+  +I G      ++EAL   +  M Q+G+     +Y+A++R 
Sbjct: 627 EIYKGMRSRDVGPNENTYNILIKGHCKARNMKEAL-YFHDEMIQKGFRLTATSYSALIRL 685

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416
           L + ++  EA+E+F+ M   G+ A+S  Y   ID     + L+      D++V  S
Sbjct: 686 LNKKKKFVEARELFHDMRKEGLTAESDVYDFYIDLNFNEDNLESTLALCDELVEAS 741



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 109/358 (30%), Positives = 184/358 (51%), Gaps = 11/358 (3%)

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
           ++ +LC +GR   A ++   M      P +V+Y  ++HG C  G    A +LL+E +  G
Sbjct: 265 LLKALCDAGRVKDARQLFDEMAS---APDVVTYGILIHGHCALGELENAVKLLDEMVAGG 321

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL 264
             P+   Y  +V  LC +  +  A +V++ M+ +K +    +    L   C   N  +L+
Sbjct: 322 VEPNATVYTSVVALLCDKGWISDALRVVEDMVQRKVILDEALYTTVLSGFC---NKGDLV 378

Query: 265 NVLVFMLQTQ---CQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTI 321
           +   +  + Q      D +T  T+ING C+   +EEA K+L +M A +    D VT+T +
Sbjct: 379 SARRWFDEMQRKGLATDGVTYTTMINGLCRAVELEEAEKLLQEMWARRLDV-DEVTYTVL 437

Query: 322 IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG 381
           I G    G++ EA  + +  M QRG +P +VTY A+  GL +   V+ A E+ + M   G
Sbjct: 438 IDGYCKRGKMAEAFQM-HNAMVQRGVTPNVVTYTALTDGLCKQGDVQAANELLHEMSNKG 496

Query: 382 VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAV 441
           +  ++ TY  +I+GLC++  L++A R   D+       D Y Y  +I  LC+SG +  A 
Sbjct: 497 LELNACTYNSLINGLCKAGYLEQAMRTMADMDTACLKPDVYTYTTLIDALCKSGDLDRAH 556

Query: 442 HFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
             L E++D G+ P IV YNV+++G C         ++L  M +  ++P+A T+  L K
Sbjct: 557 SLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKKLLDWMLEKNIHPNAATYNSLMK 614



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 91/336 (27%), Positives = 163/336 (48%), Gaps = 19/336 (5%)

Query: 165 MRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQ-FGYLPSEH--TYKVLVEGLCG 221
           +R+ G++PS  + N+++  L            L+E I+ F  LP ++  +Y +L++ LC 
Sbjct: 223 LRQYGISPSPEACNAVLSRLP-----------LDEAIELFQELPHKNVCSYNILLKALCD 271

Query: 222 ESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVIT 281
              ++ AR++   M S  DV       I +   C +      + +L  M+    +P+   
Sbjct: 272 AGRVKDARQLFDEMASAPDV---VTYGILIHGHCALGELENAVKLLDEMVAGGVEPNATV 328

Query: 282 LNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQV 341
             +V+   C  G I +AL+V+ DMV  K    +A+ +TT++ G  N G +  A    +  
Sbjct: 329 YTSVVALLCDKGWISDALRVVEDMVQRKVILDEAL-YTTVLSGFCNKGDLVSARRW-FDE 386

Query: 342 MPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ 401
           M ++G +   VTY  ++ GL R   +EEA+++   M    +  D  TY ++IDG C+  +
Sbjct: 387 MQRKGLATDGVTYTTMINGLCRAVELEEAEKLLQEMWARRLDVDEVTYTVLIDGYCKRGK 446

Query: 402 LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNV 461
           + EA +  + +V      +   Y A+  GLC+ G +  A   L+E+ + G+  N   YN 
Sbjct: 447 MAEAFQMHNAMVQRGVTPNVVTYTALTDGLCKQGDVQAANELLHEMSNKGLELNACTYNS 506

Query: 462 VIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           +I+G CK     +A + + +M    L PD  T+  L
Sbjct: 507 LINGLCKAGYLEQAMRTMADMDTACLKPDVYTYTTL 542



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 119/252 (47%), Gaps = 18/252 (7%)

Query: 254 LCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAP 313
           LCL   P     +L  + Q    P     N V++       ++EA+++  ++     C  
Sbjct: 212 LCLPSAP-----LLRRLRQYGISPSPEACNAVLSRL----PLDEAIELFQELPHKNVC-- 260

Query: 314 DAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEV 373
              ++  ++  L + GR+++A     Q+  +   +P +VTY  ++ G   L  +E A ++
Sbjct: 261 ---SYNILLKALCDAGRVKDA----RQLFDEMASAPDVVTYGILIHGHCALGELENAVKL 313

Query: 374 FNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR 433
            + M+  GV  ++T Y  V+  LC+   + +A R  +D+V    I D  +Y  ++ G C 
Sbjct: 314 LDEMVAGGVEPNATVYTSVVALLCDKGWISDALRVVEDMVQRKVILDEALYTTVLSGFCN 373

Query: 434 SGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVT 493
            G +  A  +  E+   G+  + V Y  +I+G C+     EA ++L+EM    L+ D VT
Sbjct: 374 KGDLVSARRWFDEMQRKGLATDGVTYTTMINGLCRAVELEEAEKLLQEMWARRLDVDEVT 433

Query: 494 WRILDKLHGNRG 505
           + +L   +  RG
Sbjct: 434 YTVLIDGYCKRG 445


>gi|242039015|ref|XP_002466902.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
 gi|241920756|gb|EER93900.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
          Length = 653

 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 147/521 (28%), Positives = 239/521 (45%), Gaps = 51/521 (9%)

Query: 27  PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVL 86
           PN  +Y  ++   C  G +  A  V DEMR  G  P    Y V++          R    
Sbjct: 113 PNAYTYFPVVRALCARGRIADALSVLDEMRRRGCAPIPPMYHVILEAA-----CSRGGGG 167

Query: 87  MFKLWERMKEEEDLSVNNAAF----ANLV-DSLCREG-YVNEVFRIAEDMPQGKSVNEEF 140
            F+   R+ +  DL     A      NLV +++C +G  V+E  R+  D+P     + + 
Sbjct: 168 GFRSAVRVLQ--DLHGRGCALDVGNCNLVLNAVCDQGGSVDEALRLLRDLPTSFGCDPDV 225

Query: 141 AC-GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
                ++  LC + R      ++  M + G  P++V++N+++  LC++G   R +Q+L +
Sbjct: 226 VSYNAVLKGLCMAKRWGRVQDLMEEMVRVGCPPNVVTFNTLIGYLCRNGLFERVHQVLAQ 285

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIK- 258
            +  G  P    Y  +++G+C E  LE A ++L  M S          N  L+ LC  + 
Sbjct: 286 MVDHGCTPDIRMYATVLDGVCKEGHLEVAHEILDRMPSYGLKPNVVCYNTVLKGLCSAER 345

Query: 259 --NPTELL------------------------NVLVF--------MLQTQCQPDVITLNT 284
                ELL                        N LV+        ML+  C PDVIT  T
Sbjct: 346 WEQAEELLAEMFDNDCPLDDVTFNILVDFFCQNGLVYRVIELLEQMLEHGCVPDVITYTT 405

Query: 285 VINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ 344
           VINGFCK G I+EA+ +L  M A   C P+ +++T ++ GL +  R  +A +L+ Q++ Q
Sbjct: 406 VINGFCKEGLIDEAVMLLKSMAACG-CRPNTISYTIVLKGLCSAERWVDAEDLMSQMIEQ 464

Query: 345 RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 404
            G SP  VT+N V+  L +   VE+A E+   ML  G   D  +Y+ VIDGL ++ + DE
Sbjct: 465 -GCSPNPVTFNTVINFLCKKGLVEQAIELLKQMLLNGCSPDLISYSTVIDGLGKAGKTDE 523

Query: 405 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
           A    + +V      +  +Y+++   L + G+I+  +     + D  +  + V YN VI 
Sbjct: 524 ALELLNVMVNKGMSPNTIIYSSIASALSKEGRINRVIQMFDNIQDVTIRSDAVLYNAVIS 583

Query: 465 GACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
             CK      A + L  M  +G  P+  T+ IL +   + G
Sbjct: 584 SLCKRGGTDRAIEFLAYMVSSGCMPNESTYTILIRGLASEG 624



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 105/404 (25%), Positives = 188/404 (46%), Gaps = 10/404 (2%)

Query: 107 FANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMR 166
           +  +V   CR G +    R+A  +P   +    F    ++ +LC  GR   A  V+  MR
Sbjct: 86  YNAMVSGYCRAGQLASARRLAASVPVPPNAYTYFP---VVRALCARGRIADALSVLDEMR 142

Query: 167 KRGLTPSLVSYNSIVHGLCKHGGCM---RAYQLLEEGIQFGYLPSEHTYKVLVEGLCGES 223
           +RG  P    Y+ I+   C  GG      A ++L++    G         +++  +C + 
Sbjct: 143 RRGCAPIPPMYHVILEAACSRGGGGGFRSAVRVLQDLHGRGCALDVGNCNLVLNAVCDQG 202

Query: 224 -DLEKARKVLQFMLSKKDVDRTRIC-NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVIT 281
             +++A ++L+ + +    D   +  N  L+ LC+ K    + +++  M++  C P+V+T
Sbjct: 203 GSVDEALRLLRDLPTSFGCDPDVVSYNAVLKGLCMAKRWGRVQDLMEEMVRVGCPPNVVT 262

Query: 282 LNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQV 341
            NT+I   C+ G  E   +VL  MV    C PD   + T++ G+   G ++ A  +L + 
Sbjct: 263 FNTLIGYLCRNGLFERVHQVLAQMV-DHGCTPDIRMYATVLDGVCKEGHLEVAHEILDR- 320

Query: 342 MPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ 401
           MP  G  P +V YN VL+GL    R E+A+E+   M       D  T+ I++D  C++  
Sbjct: 321 MPSYGLKPNVVCYNTVLKGLCSAERWEQAEELLAEMFDNDCPLDDVTFNILVDFFCQNGL 380

Query: 402 LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNV 461
           +       + ++    + D   Y  +I G C+ G I EAV  L  +   G  PN + Y +
Sbjct: 381 VYRVIELLEQMLEHGCVPDVITYTTVINGFCKEGLIDEAVMLLKSMAACGCRPNTISYTI 440

Query: 462 VIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
           V+ G C      +A  ++ +M + G +P+ VT+  +      +G
Sbjct: 441 VLKGLCSAERWVDAEDLMSQMIEQGCSPNPVTFNTVINFLCKKG 484



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 96/396 (24%), Positives = 173/396 (43%), Gaps = 75/396 (18%)

Query: 14  HKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRG 73
           H++   M   G  P++  Y T++ G C+ G ++VA+++ D M   G+ PN + Y+ +++G
Sbjct: 280 HQVLAQMVDHGCTPDIRMYATVLDGVCKEGHLEVAHEILDRMPSYGLKPNVVCYNTVLKG 339

Query: 74  VLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQG 133
           +      E+A  L+ ++++      D  +++  F  LVD  C+ G V  V  + E M + 
Sbjct: 340 LCSAERWEQAEELLAEMFD-----NDCPLDDVTFNILVDFFCQNGLVYRVIELLEQMLEH 394

Query: 134 KSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRA 193
             V +      +I+  C+ G    A  ++  M   G  P+ +SY  ++ GLC     + A
Sbjct: 395 GCVPDVITYTTVINGFCKEGLIDEAVMLLKSMAACGCRPNTISYTIVLKGLCSAERWVDA 454

Query: 194 YQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRA 253
             L+ + I+ G  P+  T+  ++  LC +  +E+A ++L+ ML                 
Sbjct: 455 EDLMSQMIEQGCSPNPVTFNTVINFLCKKGLVEQAIELLKQML----------------- 497

Query: 254 LCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAP 313
                     LN         C PD+I+ +TVI+G  K G+ +EAL++LN MV  K  +P
Sbjct: 498 ----------LN--------GCSPDLISYSTVIDGLGKAGKTDEALELLNVMV-NKGMSP 538

Query: 314 DAVTFTTIIFGLLNVGRIQEALNLLYQV-------------------------------- 341
           + + +++I   L   GRI   + +   +                                
Sbjct: 539 NTIIYSSIASALSKEGRINRVIQMFDNIQDVTIRSDAVLYNAVISSLCKRGGTDRAIEFL 598

Query: 342 --MPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN 375
             M   G  P   TY  ++RGL     V+EA+E+  
Sbjct: 599 AYMVSSGCMPNESTYTILIRGLASEGFVKEAQEMLT 634



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 82/343 (23%), Positives = 166/343 (48%), Gaps = 10/343 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D +C    +  AH++   M S G  PNVV Y T++ G C     + A ++  EM     
Sbjct: 302 LDGVCKEGHLEVAHEILDRMPSYGLKPNVVCYNTVLKGLCSAERWEQAEELLAEMFDNDC 361

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKE--EEDLSVNNAAFANLVDSLCREG 118
             + +T+++LV       D    N L++++ E +++  E     +   +  +++  C+EG
Sbjct: 362 PLDDVTFNILV-------DFFCQNGLVYRVIELLEQMLEHGCVPDVITYTTVINGFCKEG 414

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
            ++E   + + M          +   ++  LC + R   A  ++  M ++G +P+ V++N
Sbjct: 415 LIDEAVMLLKSMAACGCRPNTISYTIVLKGLCSAERWVDAEDLMSQMIEQGCSPNPVTFN 474

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
           ++++ LCK G   +A +LL++ +  G  P   +Y  +++GL      ++A ++L  M++K
Sbjct: 475 TVINFLCKKGLVEQAIELLKQMLLNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNK 534

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
                T I +    AL        ++ +   +     + D +  N VI+  CK G  + A
Sbjct: 535 GMSPNTIIYSSIASALSKEGRINRVIQMFDNIQDVTIRSDAVLYNAVISSLCKRGGTDRA 594

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQV 341
           ++ L  MV+   C P+  T+T +I GL + G ++EA  +L ++
Sbjct: 595 IEFLAYMVSSG-CMPNESTYTILIRGLASEGFVKEAQEMLTEL 636


>gi|224067108|ref|XP_002302359.1| predicted protein [Populus trichocarpa]
 gi|222844085|gb|EEE81632.1| predicted protein [Populus trichocarpa]
          Length = 375

 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 119/437 (27%), Positives = 206/437 (47%), Gaps = 77/437 (17%)

Query: 27  PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVL 86
           P+V++YT LI   C    +  A K+ DEM   G  P+ +TY+VLV G             
Sbjct: 14  PDVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNG------------- 60

Query: 87  MFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMI 146
                                      +C+EG ++E  +    MP   S         ++
Sbjct: 61  ---------------------------MCKEGRLDEAIKFLNSMPSYGSQPNVITHNIIL 93

Query: 147 DSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL 206
            S+C +GR   A +++  M ++G +PS+V++N +++ LC+ G   RA  +LE+    G  
Sbjct: 94  RSMCSTGRWMDAEKLLTEMVRKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPTHGCT 153

Query: 207 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 266
           P+  +Y  L+ G C E  +++A + L+ M+S+                            
Sbjct: 154 PNSLSYNPLLHGFCKEKKMDRAIQYLEIMVSRG--------------------------- 186

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
                   C PD++T NT++   CK G+++ A+++LN + + K C+P  +T+ T+I GL 
Sbjct: 187 --------CYPDIVTYNTMLTALCKDGKVDAAVELLNQL-SSKGCSPVLITYNTVIDGLS 237

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
            VG+  +A+ LL++ M  +G  P ++TY++++ GL R  +VEEA + F+ + G GV  ++
Sbjct: 238 KVGKTDQAVELLHE-MRGKGLKPDVITYSSLIAGLSREGKVEEAIKFFHDVEGFGVKPNA 296

Query: 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE 446
            TY  ++ GLC++ Q D A  F   ++          Y  +I+G+   G   EA+  L E
Sbjct: 297 FTYNSIMFGLCKAQQTDRAIDFLAYMISKGCKPTEVSYTILIEGIANEGLAKEALELLNE 356

Query: 447 LVDSGVTPNIVCYNVVI 463
           L   GV        VV+
Sbjct: 357 LCSRGVVKKSSAEQVVV 373



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 98/356 (27%), Positives = 188/356 (52%), Gaps = 2/356 (0%)

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
           +I++ C       A +++  M  RG  P +V+YN +V+G+CK G    A + L     +G
Sbjct: 22  LIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNGMCKEGRLDEAIKFLNSMPSYG 81

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL 264
             P+  T+ +++  +C       A K+L  M+ K         NI +  LC        +
Sbjct: 82  SQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCSPSVVTFNILINFLCRKGLLGRAI 141

Query: 265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 324
           ++L  M    C P+ ++ N +++GFCK  +++ A++ L  MV+ + C PD VT+ T++  
Sbjct: 142 DILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLEIMVS-RGCYPDIVTYNTMLTA 200

Query: 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 384
           L   G++  A+ LL Q +  +G SP ++TYN V+ GL ++ + ++A E+ + M G G+  
Sbjct: 201 LCKDGKVDAAVELLNQ-LSSKGCSPVLITYNTVIDGLSKVGKTDQAVELLHEMRGKGLKP 259

Query: 385 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFL 444
           D  TY+ +I GL    +++EA +F+ D+       + + Y +++ GLC++ +   A+ FL
Sbjct: 260 DVITYSSLIAGLSREGKVEEAIKFFHDVEGFGVKPNAFTYNSIMFGLCKAQQTDRAIDFL 319

Query: 445 YELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKL 500
             ++  G  P  V Y ++I+G     + +EA ++L E+   G+   +   +++ +L
Sbjct: 320 AYMISKGCKPTEVSYTILIEGIANEGLAKEALELLNELCSRGVVKKSSAEQVVVRL 375



 Score =  168 bits (425), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 103/334 (30%), Positives = 162/334 (48%), Gaps = 2/334 (0%)

Query: 172 PSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKV 231
           P +++Y  ++   C   G  +A +LL+E    G  P   TY VLV G+C E  L++A K 
Sbjct: 14  PDVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNGMCKEGRLDEAIKF 73

Query: 232 LQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK 291
           L  M S          NI LR++C      +   +L  M++  C P V+T N +IN  C+
Sbjct: 74  LNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCSPSVVTFNILINFLCR 133

Query: 292 MGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGI 351
            G +  A+ +L  M     C P+++++  ++ G     ++  A+  L ++M  RG  P I
Sbjct: 134 KGLLGRAIDILEKM-PTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYL-EIMVSRGCYPDI 191

Query: 352 VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDD 411
           VTYN +L  L +  +V+ A E+ N +   G      TY  VIDGL +  + D+A     +
Sbjct: 192 VTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAVELLHE 251

Query: 412 IVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSM 471
           +       D   Y+++I GL R GK+ EA+ F +++   GV PN   YN ++ G CK   
Sbjct: 252 MRGKGLKPDVITYSSLIAGLSREGKVEEAIKFFHDVEGFGVKPNAFTYNSIMFGLCKAQQ 311

Query: 472 KREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
              A   L  M   G  P  V++ IL +   N G
Sbjct: 312 TDRAIDFLAYMISKGCKPTEVSYTILIEGIANEG 345



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 107/393 (27%), Positives = 183/393 (46%), Gaps = 42/393 (10%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C  S VG+A KL  +M SRG  P+VV+Y  L++G C+ G +D A K  + M   G 
Sbjct: 23  IEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNGMCKEGRLDEAIKFLNSMPSYGS 82

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +T+++++R +  T     A  L+ ++  +       S +   F  L++ LCR+G +
Sbjct: 83  QPNVITHNIILRSMCSTGRWMDAEKLLTEMVRK-----GCSPSVVTFNILINFLCRKGLL 137

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                I E MP         +   ++   C+  +   A + + +M  RG  P +V+YN++
Sbjct: 138 GRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLEIMVSRGCYPDIVTYNTM 197

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +  LCK G    A +LL +    G  P   TY  +++GL      ++A ++L  M  K  
Sbjct: 198 LTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAVELLHEMRGKG- 256

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                              +PDVIT +++I G  + G++EEA+K
Sbjct: 257 ----------------------------------LKPDVITYSSLIAGLSREGKVEEAIK 282

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
             +D V G    P+A T+ +I+FGL    +   A++ L   M  +G  P  V+Y  ++ G
Sbjct: 283 FFHD-VEGFGVKPNAFTYNSIMFGLCKAQQTDRAIDFL-AYMISKGCKPTEVSYTILIEG 340

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVI 393
           +      +EA E+ N +   GVV  S+   +V+
Sbjct: 341 IANEGLAKEALELLNELCSRGVVKKSSAEQVVV 373



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 90/303 (29%), Positives = 148/303 (48%), Gaps = 37/303 (12%)

Query: 195 QLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRAL 254
           ++L+  ++    P   TY +L+E  C ES + +A K+L  M S+                
Sbjct: 2   EVLDRQLEKECYPDVITYTILIEATCAESGVGQAMKLLDEMGSRG--------------- 46

Query: 255 CLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPD 314
                               C+PDV+T N ++NG CK GR++EA+K LN M       P+
Sbjct: 47  --------------------CKPDVVTYNVLVNGMCKEGRLDEAIKFLNSM-PSYGSQPN 85

Query: 315 AVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVF 374
            +T   I+  + + GR  +A  LL + M ++G SP +VT+N ++  L R   +  A ++ 
Sbjct: 86  VITHNIILRSMCSTGRWMDAEKLLTE-MVRKGCSPSVVTFNILINFLCRKGLLGRAIDIL 144

Query: 375 NCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRS 434
             M   G   +S +Y  ++ G C+  ++D A ++ + +V      D   Y  M+  LC+ 
Sbjct: 145 EKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLEIMVSRGCYPDIVTYNTMLTALCKD 204

Query: 435 GKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
           GK+  AV  L +L   G +P ++ YN VIDG  K+    +A ++L EMR  GL PD +T+
Sbjct: 205 GKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAVELLHEMRGKGLKPDVITY 264

Query: 495 RIL 497
             L
Sbjct: 265 SSL 267


>gi|222612845|gb|EEE50977.1| hypothetical protein OsJ_31558 [Oryza sativa Japonica Group]
          Length = 1263

 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 144/565 (25%), Positives = 260/565 (46%), Gaps = 79/565 (13%)

Query: 4    LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            L    R+G A ++F ++K+ G  P+ ++YT +I    +  + D A K+F +M     +P+
Sbjct: 575  LAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPD 634

Query: 64   SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             L  + L+  + +    + A  + ++L     +E +L   +  +  L+  L REG V EV
Sbjct: 635  VLAVNSLIDTLYKAGRGDEAWRIFYQL-----KEMNLEPTDGTYNTLLAGLGREGKVKEV 689

Query: 124  FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
              + E+M              ++D LC++G  + A  ++Y M  +G  P L SYN++++G
Sbjct: 690  MHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYG 749

Query: 184  LCKHGGCMRAYQ---------------------------LLEEGI--------QFGYLPS 208
            L K      A+                            L++E +        Q G    
Sbjct: 750  LVKEERYNEAFSIFCQMKKVLIPDYATLCTILPSFVKIGLMKEALHIIKDYFLQPGSKTD 809

Query: 209  EHTYKVLVEGLCGESDLEKARKVLQFMLSKK-DVDRTRICNIYLRALCLIKNPTE----- 262
              +   L+EG+  ++ +EK+ +  + + S    +D   +C + ++ LC  K   E     
Sbjct: 810  RSSCHSLMEGILKKAGIEKSIEFAEIIASSGITLDDFFLCPL-IKHLCKQKKALEAHELV 868

Query: 263  -------------LLNVLVF-----------------MLQTQCQPDVITLNTVINGFCKM 292
                         L N L+                  M +  C PD  T N +++   K 
Sbjct: 869  KKFKSFGVSLKTGLYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKS 928

Query: 293  GRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIV 352
             RIEE LKV  +M    +     VT+ TII GL+   R+++A++L Y +M Q G+SP   
Sbjct: 929  MRIEEMLKVQEEMHRKGY-ESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQ-GFSPTPC 986

Query: 353  TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI 412
            TY  +L GL +  R+E+A+ +FN ML  G  A+ T Y I+++G   +   ++    + D+
Sbjct: 987  TYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDM 1046

Query: 413  VWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMK 472
            V      D   Y  +I  LC++G++++ + +  +L++ G+ P+++ YN++IDG  K    
Sbjct: 1047 VDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRL 1106

Query: 473  REAYQILREMRKNGLNPDAVTWRIL 497
             EA  +  EM+K G+ P+  T+  L
Sbjct: 1107 EEAVSLFNEMQKKGIVPNLYTYNSL 1131



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 128/570 (22%), Positives = 240/570 (42%), Gaps = 65/570 (11%)

Query: 1    MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
            +D LC + RV EA ++F +MK +G VP   SY +LI G+ +      A ++F  M   G 
Sbjct: 467  IDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHGP 526

Query: 61   LPNSLTYSVLV----------RGVLR---------TRDVERANVLMFKLWERMK------ 95
             PN  T+ + +          + + R           DV   N ++F L +  +      
Sbjct: 527  KPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKR 586

Query: 96   -----EEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC 150
                 +   +S +   +  ++    +    +E  +I  DM +   V +  A   +ID+L 
Sbjct: 587  VFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLY 646

Query: 151  RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
            ++GR   A R+ Y +++  L P+  +YN+++ GL + G       LLEE     Y P+  
Sbjct: 647  KAGRGDEAWRIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLI 706

Query: 211  TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM 270
            TY  +++ LC    +  A  +L  M +K  +      N  +  L   +   E  ++   M
Sbjct: 707  TYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQM 766

Query: 271  LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR 330
             +    PD  TL T++  F K+G ++EAL ++ D         D  +  +++ G+L    
Sbjct: 767  KKVLI-PDYATLCTILPSFVKIGLMKEALHIIKDYFLQPGSKTDRSSCHSLMEGILKKAG 825

Query: 331  IQEALN-------------------LLYQVMPQR---------------GYSPGIVTYNA 356
            I++++                    L+  +  Q+               G S     YN+
Sbjct: 826  IEKSIEFAEIIASSGITLDDFFLCPLIKHLCKQKKALEAHELVKKFKSFGVSLKTGLYNS 885

Query: 357  VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416
            ++ GL     ++ A+ +F  M  +G   D  TY +++D + +S +++E  +  +++    
Sbjct: 886  LICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKG 945

Query: 417  NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAY 476
                   Y  +I GL +S ++ +A+   Y L+  G +P    Y  ++DG  K     +A 
Sbjct: 946  YESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAE 1005

Query: 477  QILREMRKNGLNPDAVTWRILDKLHGNRGN 506
             +  EM + G   +   + IL   H   GN
Sbjct: 1006 NLFNEMLEYGCKANCTIYNILLNGHRIAGN 1035



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 124/525 (23%), Positives = 232/525 (44%), Gaps = 45/525 (8%)

Query: 4    LCGLSRVG---EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
            L GL R G   E   L  +M    + PN+++Y T++   C+ G ++ A  +   M   G 
Sbjct: 677  LAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGC 736

Query: 61   LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            +P+  +Y+ ++ G+++    ER N   F ++ +MK+   L  + A    ++ S  + G +
Sbjct: 737  IPDLSSYNTVIYGLVKE---ERYNE-AFSIFCQMKKV--LIPDYATLCTILPSFVKIGLM 790

Query: 121  NEVFRIAED-MPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
             E   I +D   Q  S  +  +C  +++ + +      +     ++   G+T        
Sbjct: 791  KEALHIIKDYFLQPGSKTDRSSCHSLMEGILKKAGIEKSIEFAEIIASSGITLDDFFLCP 850

Query: 180  IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
            ++  LCK    + A++L+++   FG       Y  L+ GL  E+ ++ A  +   M    
Sbjct: 851  LIKHLCKQKKALEAHELVKKFKSFGVSLKTGLYNSLICGLVDENLIDIAEGLFAEMKELG 910

Query: 240  DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                    N+ L A+       E+L V   M +   +   +T NT+I+G  K  R+E+A+
Sbjct: 911  CGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAI 970

Query: 300  KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNL---------------------- 337
             +  ++++  F +P   T+  ++ GLL  GRI++A NL                      
Sbjct: 971  DLYYNLMSQGF-SPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNG 1029

Query: 338  ------------LYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 385
                        L+Q M  +G +P I +Y  ++  L +  ++ +    F  +L +G+  D
Sbjct: 1030 HRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPD 1089

Query: 386  STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY 445
              TY ++IDGL +S +L+EA   ++++     + + Y Y ++I  L ++GK  EA     
Sbjct: 1090 LITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYE 1149

Query: 446  ELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD 490
            EL+  G  PN+  YN +I G         AY     M   G  P+
Sbjct: 1150 ELLTKGWKPNVFTYNALIRGYSVSGSTDSAYAAYGRMIVGGCLPN 1194



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 121/512 (23%), Positives = 210/512 (41%), Gaps = 81/512 (15%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           MK  G V N  +Y  L++   ++G    A +V+  M   GV+P+  TYSVL+    + RD
Sbjct: 276 MKEAGIVLNAYTYNGLVYFLVKSGFDREALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRD 335

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
           VE    L+     R  E   +  N  ++   +  L +    +E +RI   M       + 
Sbjct: 336 VETVLWLL-----REMEAHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDV 390

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
                +I  LC +GR   A  V + M+K    P  V+Y +++     +G      ++   
Sbjct: 391 ITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNA 450

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
               GY  +   Y  +++                                   ALC +  
Sbjct: 451 MKADGYNDNVVAYTAVID-----------------------------------ALCQVGR 475

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
             E L +   M Q    P+  + N++I+GF K  R  +AL++   M       P    +T
Sbjct: 476 VFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHM---DIHGPKPNGYT 532

Query: 320 TIIFGLLNVGRIQEALNLL--YQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCM 377
            ++F +   G+  E++  +  Y++M  +G  P +V  NAVL GL +  R+  AK VF+ +
Sbjct: 533 HVLF-INYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHEL 591

Query: 378 LGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD----------------- 420
             +GV  D+ TY ++I    ++++ DEA + + D++  + + D                 
Sbjct: 592 KAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRG 651

Query: 421 ------------------NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVV 462
                             +  Y  ++ GL R GK+ E +H L E+  S   PN++ YN +
Sbjct: 652 DEAWRIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTI 711

Query: 463 IDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
           +D  CK     +A  +L  M   G  PD  ++
Sbjct: 712 LDCLCKNGAVNDALDMLYSMTTKGCIPDLSSY 743



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 92/385 (23%), Positives = 157/385 (40%), Gaps = 41/385 (10%)

Query: 122 EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
           E FR A   P  +      +C +M++ +   GR    + V  VM+++ +  ++ ++ +I 
Sbjct: 200 ERFRSAARKP--RVAQTTASCNYMLELMRGHGRVGDMAEVFDVMQRQIVKANVGTFAAIF 257

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
            GL   GG   A   L    + G + + +TY  LV                 + L K   
Sbjct: 258 GGLGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLV-----------------YFLVKSGF 300

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
           DR                  E L V   M+     P V T + ++  F K   +E  L +
Sbjct: 301 DR------------------EALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWL 342

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
           L +M A     P+  ++T  I  L    R  EA  +L + M   G  P ++T+  +++ L
Sbjct: 343 LREMEA-HGVKPNVYSYTICIRVLGQAKRFDEAYRILAK-MENEGCKPDVITHTVLIQVL 400

Query: 362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
               R+ +AK+VF  M       D  TY  ++D   ++         W+ +      +DN
Sbjct: 401 CDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMK-ADGYNDN 459

Query: 422 YV-YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
            V Y A+I  LC+ G++ EA+    E+   G+ P    YN +I G  K     +A ++ +
Sbjct: 460 VVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFK 519

Query: 481 EMRKNGLNPDAVTWRILDKLHGNRG 505
            M  +G  P+  T  +    +G  G
Sbjct: 520 HMDIHGPKPNGYTHVLFINYYGKSG 544


>gi|357120446|ref|XP_003561938.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Brachypodium distachyon]
          Length = 787

 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 132/486 (27%), Positives = 231/486 (47%), Gaps = 14/486 (2%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C    + +A      M+  G  P+ V+Y TL++ +CR G +  A  +   M+  GV P  
Sbjct: 215 CSKGTLADALSTLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKKDGVAPTR 274

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKE---EEDLSVNNAAFANLVDSLCREGYVN 121
            TY+ LV    R   +++A     K+ E M     E DL   N     L   LC+ G V+
Sbjct: 275 PTYNTLVSAYARLGWIKQAT----KVVEAMTANGFEPDLWTYNV----LAAGLCQAGKVD 326

Query: 122 EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGR-NHGASRVVYVMRKRGLTPSLVSYNSI 180
           E FR+ ++M +  ++  +    + +   C   R +  A R++  MR++G+  +LV++N +
Sbjct: 327 EAFRLKDEMERLGTLLPDVVTYNTLADACFKCRCSSDALRLLEEMREKGVKATLVTHNIV 386

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GLCK G    A   L +    G  P   TY  L+   C   ++ KA  ++  M+ +  
Sbjct: 387 IKGLCKDGELEGALGCLNKMADDGLAPDVITYNTLIHAHCKAGNIAKAYTLMDEMVRRGL 446

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
              T   N  L  LC  K   E   +L    Q    PD ++  TV+  + K    E AL+
Sbjct: 447 KLDTFTLNTVLYNLCKEKRYEEAQGLLQSPPQRGFMPDEVSYGTVMAAYFKEYNSEPALR 506

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           + ++M+  K   P   T+ T+I GL  +GR++EA++ L ++M ++G  P   TYN ++  
Sbjct: 507 LWDEMIEKKLT-PSISTYNTLIKGLSRMGRLKEAIDKLNELM-EKGLVPDDTTYNIIIHA 564

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
             +   +E A +  N M+      D  T   +++GLC + +LD+A + ++  V      D
Sbjct: 565 YCKEGDLENAFQFHNKMVENSFKPDVVTCNTLMNGLCLNGKLDKALKLFESWVEKGKKVD 624

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              Y  +I+ +C+ G +  A+HF  ++   G+ P+   YNVV+    +     EA  +L 
Sbjct: 625 VITYNTLIQTMCKDGDVDTALHFFADMEARGLQPDAFTYNVVLSALSEAGRTEEAQNMLH 684

Query: 481 EMRKNG 486
           ++ ++G
Sbjct: 685 KLAESG 690



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 140/535 (26%), Positives = 240/535 (44%), Gaps = 55/535 (10%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C    +GEA  L   MK  G  P   +Y TL+  Y R G +  A KV + M   G  P+ 
Sbjct: 250 CRKGMLGEARALLARMKKDGVAPTRPTYNTLVSAYARLGWIKQATKVVEAMTANGFEPDL 309

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
            TY+VL  G+ +   V+ A    F+L + M+    L  +   +  L D+  +    ++  
Sbjct: 310 WTYNVLAAGLCQAGKVDEA----FRLKDEMERLGTLLPDVVTYNTLADACFKCRCSSDAL 365

Query: 125 RIAEDMPQGKSVNEEFACGHM-IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           R+ E+M + K V       ++ I  LC+ G   GA   +  M   GL P +++YN+++H 
Sbjct: 366 RLLEEM-REKGVKATLVTHNIVIKGLCKDGELEGALGCLNKMADDGLAPDVITYNTLIHA 424

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQ------FMLS 237
            CK G   +AY L++E ++ G      T   ++  LC E   E+A+ +LQ      FM  
Sbjct: 425 HCKAGNIAKAYTLMDEMVRRGLKLDTFTLNTVLYNLCKEKRYEEAQGLLQSPPQRGFM-- 482

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
             +V    +   Y +      N    L +   M++ +  P + T NT+I G  +MGR++E
Sbjct: 483 PDEVSYGTVMAAYFKEY----NSEPALRLWDEMIEKKLTPSISTYNTLIKGLSRMGRLKE 538

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           A+  LN+++  K   PD  T+  II      G ++ A    +  M +  + P +VT N +
Sbjct: 539 AIDKLNELME-KGLVPDDTTYNIIIHAYCKEGDLENAFQF-HNKMVENSFKPDVVTCNTL 596

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 417
           + GL    ++++A ++F   +  G   D  TY  +I  +C+   +D A  F+ D+     
Sbjct: 597 MNGLCLNGKLDKALKLFESWVEKGKKVDVITYNTLIQTMCKDGDVDTALHFFADMEARGL 656

Query: 418 IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG----------VTPNIV---------- 457
             D + Y  ++  L  +G+  EA + L++L +SG          + P+ V          
Sbjct: 657 QPDAFTYNVVLSALSEAGRTEEAQNMLHKLAESGTLSQSFSSPLLKPSSVDEAESGKDAK 716

Query: 458 ---------------CYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
                           Y  +++G C     +EA  IL EM + G++ D+ T+  L
Sbjct: 717 TEEETVENPQDSASEAYTKLVNGLCTSGQFKEAKAILDEMMQKGMSVDSSTYITL 771



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 109/428 (25%), Positives = 206/428 (48%), Gaps = 11/428 (2%)

Query: 11  GEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVL 70
            +A +L  +M+ +G    +V++  +I G C+ GE++ A    ++M   G+ P+ +TY+ L
Sbjct: 362 SDALRLLEEMREKGVKATLVTHNIVIKGLCKDGELEGALGCLNKMADDGLAPDVITYNTL 421

Query: 71  VRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDM 130
           +    +  ++ +A  LM ++  R  + +  ++N   +     +LC+E    E   + +  
Sbjct: 422 IHAHCKAGNIAKAYTLMDEMVRRGLKLDTFTLNTVLY-----NLCKEKRYEEAQGLLQSP 476

Query: 131 PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGC 190
           PQ   + +E + G ++ +  +   +  A R+   M ++ LTPS+ +YN+++ GL + G  
Sbjct: 477 PQRGFMPDEVSYGTVMAAYFKEYNSEPALRLWDEMIEKKLTPSISTYNTLIKGLSRMGRL 536

Query: 191 MRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIY 250
             A   L E ++ G +P + TY +++   C E DLE A +    M+          CN  
Sbjct: 537 KEAIDKLNELMEKGLVPDDTTYNIIIHAYCKEGDLENAFQFHNKMVENSFKPDVVTCNTL 596

Query: 251 LRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKF 310
           +  LCL     + L +    ++   + DVIT NT+I   CK G ++ AL    DM A + 
Sbjct: 597 MNGLCLNGKLDKALKLFESWVEKGKKVDVITYNTLIQTMCKDGDVDTALHFFADMEA-RG 655

Query: 311 CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEA 370
             PDA T+  ++  L   GR +EA N+L+++      S    ++++ L     +   E  
Sbjct: 656 LQPDAFTYNVVLSALSEAGRTEEAQNMLHKLAESGTLS---QSFSSPLLKPSSVDEAESG 712

Query: 371 KEVFNCMLGIGVVADSTT--YAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI 428
           K+       +    DS +  Y  +++GLC S Q  EAK   D+++      D+  Y  ++
Sbjct: 713 KDAKTEEETVENPQDSASEAYTKLVNGLCTSGQFKEAKAILDEMMQKGMSVDSSTYITLM 772

Query: 429 KGLCRSGK 436
           +GL +  K
Sbjct: 773 EGLVKRQK 780



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 104/404 (25%), Positives = 175/404 (43%), Gaps = 48/404 (11%)

Query: 100 LSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFAC-GHMIDSLCRSGRNHGA 158
           L  N+  F  LV + C +G + +       M QG  ++ +      ++++ CR G    A
Sbjct: 200 LHPNHYTFNLLVHTHCSKGTLADALSTLSTM-QGFGLSPDAVTYNTLLNAHCRKGMLGEA 258

Query: 159 SRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEG 218
             ++  M+K G+ P+  +YN++V    + G   +A +++E     G+ P   TY VL  G
Sbjct: 259 RALLARMKKDGVAPTRPTYNTLVSAYARLGWIKQATKVVEAMTANGFEPDLWTYNVLAAG 318

Query: 219 LCGESDLEKARKVLQFM-----LSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQT 273
           LC    +++A ++   M     L    V    + +   +  C     ++ L +L  M + 
Sbjct: 319 LCQAGKVDEAFRLKDEMERLGTLLPDVVTYNTLADACFKCRC----SSDALRLLEEMREK 374

Query: 274 QCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQE 333
             +  ++T N VI G CK G +E AL  LN M A    APD +T+ T+I      G I +
Sbjct: 375 GVKATLVTHNIVIKGLCKDGELEGALGCLNKM-ADDGLAPDVITYNTLIHAHCKAGNIAK 433

Query: 334 ALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVI 393
           A  L+ + M +RG      T N VL  L + +R EEA+ +       G + D  +Y  V+
Sbjct: 434 AYTLMDE-MVRRGLKLDTFTLNTVLYNLCKEKRYEEAQGLLQSPPQRGFMPDEVSYGTVM 492

Query: 394 DGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVT 453
               +    + A R WD                                   E+++  +T
Sbjct: 493 AAYFKEYNSEPALRLWD-----------------------------------EMIEKKLT 517

Query: 454 PNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           P+I  YN +I G  ++   +EA   L E+ + GL PD  T+ I+
Sbjct: 518 PSISTYNTLIKGLSRMGRLKEAIDKLNELMEKGLVPDDTTYNII 561



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 76/253 (30%), Positives = 124/253 (49%), Gaps = 11/253 (4%)

Query: 259 NPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTF 318
           +P   L+    ++  +  P+  T N +++  C  G + +AL  L+ M  G   +PDAVT+
Sbjct: 184 SPQASLDAFRSIVALRLHPNHYTFNLLVHTHCSKGTLADALSTLSTM-QGFGLSPDAVTY 242

Query: 319 TTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCML 378
            T++      G + EA  LL + M + G +P   TYN ++    RL  +++A +V   M 
Sbjct: 243 NTLLNAHCRKGMLGEARALLAR-MKKDGVAPTRPTYNTLVSAYARLGWIKQATKVVEAMT 301

Query: 379 GIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI-----VWPSNIHDNYVYAAMIKGLCR 433
             G   D  TY ++  GLC++ ++DEA R  D++     + P  +  N +  A  K  C 
Sbjct: 302 ANGFEPDLWTYNVLAAGLCQAGKVDEAFRLKDEMERLGTLLPDVVTYNTLADACFKCRCS 361

Query: 434 SGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVT 493
           S    +A+  L E+ + GV   +V +N+VI G CK      A   L +M  +GL PD +T
Sbjct: 362 S----DALRLLEEMREKGVKATLVTHNIVIKGLCKDGELEGALGCLNKMADDGLAPDVIT 417

Query: 494 WRILDKLHGNRGN 506
           +  L   H   GN
Sbjct: 418 YNTLIHAHCKAGN 430



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/337 (22%), Positives = 147/337 (43%), Gaps = 34/337 (10%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R  EA  L      RG +P+ VSY T++  Y +    + A +++DEM    + P+
Sbjct: 460 LCKEKRYEEAQGLLQSPPQRGFMPDEVSYGTVMAAYFKEYNSEPALRLWDEMIEKKLTPS 519

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             TY+ L++G+ R   ++ A   + KL E M  E+ L  ++  +  ++ + C+EG +   
Sbjct: 520 ISTYNTLIKGLSRMGRLKEA---IDKLNELM--EKGLVPDDTTYNIIIHAYCKEGDLENA 574

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           F+    M +     +   C  +++ LC +G+   A ++     ++G    +++YN+++  
Sbjct: 575 FQFHNKMVENSFKPDVVTCNTLMNGLCLNGKLDKALKLFESWVEKGKKVDVITYNTLIQT 634

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQ---------- 233
           +CK G    A     +    G  P   TY V++  L      E+A+ +L           
Sbjct: 635 MCKDGDVDTALHFFADMEARGLQPDAFTYNVVLSALSEAGRTEEAQNMLHKLAESGTLSQ 694

Query: 234 ----FMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGF 289
                +L    VD              ++NP +  +                   ++NG 
Sbjct: 695 SFSSPLLKPSSVDEAESGKDAKTEEETVENPQDSASE--------------AYTKLVNGL 740

Query: 290 CKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
           C  G+ +EA  +L++M+  K  + D+ T+ T++ GL+
Sbjct: 741 CTSGQFKEAKAILDEMMQ-KGMSVDSSTYITLMEGLV 776



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 87/186 (46%), Gaps = 5/186 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M+ LC   ++ +A KLF     +G   +V++Y TLI   C+ G++D A   F +M   G+
Sbjct: 597 MNGLCLNGKLDKALKLFESWVEKGKKVDVITYNTLIQTMCKDGDVDTALHFFADMEARGL 656

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P++ TY+V++  +      E A  ++ KL E     +  S        L  S   E   
Sbjct: 657 QPDAFTYNVVLSALSEAGRTEEAQNMLHKLAESGTLSQSFSS-----PLLKPSSVDEAES 711

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +  +  E+  +    +   A   +++ LC SG+   A  ++  M ++G++    +Y ++
Sbjct: 712 GKDAKTEEETVENPQDSASEAYTKLVNGLCTSGQFKEAKAILDEMMQKGMSVDSSTYITL 771

Query: 181 VHGLCK 186
           + GL K
Sbjct: 772 MEGLVK 777


>gi|125561029|gb|EAZ06477.1| hypothetical protein OsI_28715 [Oryza sativa Indica Group]
          Length = 621

 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 136/466 (29%), Positives = 232/466 (49%), Gaps = 40/466 (8%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R  EA  L  +  S G  PN+V Y  LI GYC  GEM+ A KVF+ M      PN
Sbjct: 187 LCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPN 246

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             TY+ L+ G+ ++  VERA V    L+ RM  E  L  N   +  L+   C EG++   
Sbjct: 247 VRTYTELIHGLCKSGKVERAMV----LFSRMV-EAGLEPNVVTYTALIQGQCNEGHLQCA 301

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           FR+   M     V  ++    +ID+LC+  +   A   +  + K+G+  + V Y S++ G
Sbjct: 302 FRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDG 361

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK----K 239
           LCK G    A +L+++ I  G++P  H+Y  L++GLC +  L +A  +L+ M+ K     
Sbjct: 362 LCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQAS 421

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
            V  T I +  +R +   + P ++ +    M+ T   PD++T    +  +C+ GR+E+A 
Sbjct: 422 PVTYTIIIDELVREVG-SEGPKKIFDK---MIATGINPDIVTYTVFVRSYCEEGRMEDAE 477

Query: 300 KVLNDMV-AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
            ++  MV  G F  P+ VT+ T+I G  N+G + +A +  ++VM  +G+ P   +Y  +L
Sbjct: 478 SMIVQMVDRGVF--PNLVTYNTLIRGYANLGLVSQAFS-TFEVMVGKGWKPNEDSYTVLL 534

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
           R + +    + + +++        +AD     ++++ + E  QL  A             
Sbjct: 535 RLVVKKSSSDNSVDIWK-------IADMKDLQVLLEDITE-RQLPLAAD----------- 575

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
               +Y+  I+ LCR  ++ EA HF   + ++ +TP+   Y  +ID
Sbjct: 576 ----IYSCFIRCLCRVDRLEEAKHFFMGMQNANLTPSEDVYTSIID 617



 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 127/500 (25%), Positives = 220/500 (44%), Gaps = 42/500 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C    +  A +    +   G  P+  +YT+ + GYCR G +  A +VF  M   G 
Sbjct: 79  INAYCLAGDIPAAKQHLTSLLHAGLAPDSYAYTSFVLGYCRAGMLTHACRVFVLMPLRGC 138

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           L  + TY+ L+ G+L    V  A  +   +       +  + +   +A +V  LC  G  
Sbjct: 139 LRTAFTYTALLHGLLGAGMVREAMTVFVGM-----RADSCAPDTHVYATMVHGLCEAGRT 193

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E   + E+               +ID  C +G    A +V   M     +P++ +Y  +
Sbjct: 194 EEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTEL 253

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +HGLCK G   RA  L    ++ G  P+  TY  L++G C E  L+ A ++L  M +   
Sbjct: 254 IHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMET--- 310

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                   N LV        P+  T + +I+  CK  ++EEA  
Sbjct: 311 ------------------------NGLV--------PNDWTFSVLIDALCKREKVEEAQL 338

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
            L  +V  K    + V +T++I GL   G+I +A + L Q M   G+ P   +Y++++ G
Sbjct: 339 FLGSLVK-KGVKVNEVVYTSLIDGLCKTGKI-DAADELMQKMISEGFVPDAHSYSSLIDG 396

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L R +++ +A  +   M+  G+ A   TY I+ID L      +  K+ +D ++      D
Sbjct: 397 LCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMIATGINPD 456

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              Y   ++  C  G++ +A   + ++VD GV PN+V YN +I G   L +  +A+    
Sbjct: 457 IVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYANLGLVSQAFSTFE 516

Query: 481 EMRKNGLNPDAVTWRILDKL 500
            M   G  P+  ++ +L +L
Sbjct: 517 VMVGKGWKPNEDSYTVLLRL 536



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 132/530 (24%), Positives = 219/530 (41%), Gaps = 115/530 (21%)

Query: 14  HKLFFDMKS---RGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVL 70
           H++F DM+S   R    N+ +YTTLI+ YC  G++  A +    + H G+ P+S  Y+  
Sbjct: 54  HRMFPDMESLASRMPARNLRTYTTLINAYCLAGDIPAAKQHLTSLLHAGLAPDSYAYTSF 113

Query: 71  VRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDM 130
           V G                                         CR G +    R+   M
Sbjct: 114 VLG----------------------------------------YCRAGMLTHACRVFVLM 133

Query: 131 PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGC 190
           P    +   F    ++  L  +G    A  V   MR     P    Y ++VHGLC+ G  
Sbjct: 134 PLRGCLRTAFTYTALLHGLLGAGMVREAMTVFVGMRADSCAPDTHVYATMVHGLCEAGRT 193

Query: 191 MRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIY 250
             A  LLEE +  G+ P+   Y  L++G C   ++E A KV + M    D +R       
Sbjct: 194 EEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGM----DGNR------- 242

Query: 251 LRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKF 310
                                   C P+V T   +I+G CK G++E A+ + + MV    
Sbjct: 243 ------------------------CSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGL 278

Query: 311 CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEA 370
             P+ VT+T +I G  N G +Q A  LL+ +M   G  P   T++ ++  L +  +VEEA
Sbjct: 279 -EPNVVTYTALIQGQCNEGHLQCAFRLLH-LMETNGLVPNDWTFSVLIDALCKREKVEEA 336

Query: 371 KEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKG 430
           +     ++  GV  +   Y  +IDGLC++ ++D A      ++    + D + Y+++I G
Sbjct: 337 QLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDG 396

Query: 431 LCRSGKIHEAVHFLYELVD-----------------------------------SGVTPN 455
           LCR  K+ +A   L ++++                                   +G+ P+
Sbjct: 397 LCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMIATGINPD 456

Query: 456 IVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
           IV Y V +   C+     +A  ++ +M   G+ P+ VT+  L + + N G
Sbjct: 457 IVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYANLG 506



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 140/300 (46%), Gaps = 19/300 (6%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   +V EA      +  +G   N V YT+LI G C+TG++D A ++  +M   G 
Sbjct: 324 IDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGF 383

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P++ +YS L+ G+ R + + +A +++  + E+      +  +   +  ++D L RE   
Sbjct: 384 VPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEK-----GIQASPVTYTIIIDELVREVGS 438

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHM-IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
               +I + M     +N +     + + S C  GR   A  ++  M  RG+ P+LV+YN+
Sbjct: 439 EGPKKIFDKM-IATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNT 497

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGES------------DLEK 227
           ++ G    G   +A+   E  +  G+ P+E +Y VL+  +  +S            D++ 
Sbjct: 498 LIRGYANLGLVSQAFSTFEVMVGKGWKPNEDSYTVLLRLVVKKSSSDNSVDIWKIADMKD 557

Query: 228 ARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVIN 287
            + +L+ +  ++      I + ++R LC +    E  +  + M      P      ++I+
Sbjct: 558 LQVLLEDITERQLPLAADIYSCFIRCLCRVDRLEEAKHFFMGMQNANLTPSEDVYTSIID 617



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 107/226 (47%), Gaps = 2/226 (0%)

Query: 281 TLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQ 340
           T  T+IN +C  G I  A + L  ++     APD+  +T+ + G    G +  A  + + 
Sbjct: 74  TYTTLINAYCLAGDIPAAKQHLTSLLHAGL-APDSYAYTSFVLGYCRAGMLTHACRV-FV 131

Query: 341 VMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN 400
           +MP RG      TY A+L GL     V EA  VF  M       D+  YA ++ GLCE+ 
Sbjct: 132 LMPLRGCLRTAFTYTALLHGLLGAGMVREAMTVFVGMRADSCAPDTHVYATMVHGLCEAG 191

Query: 401 QLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYN 460
           + +EA+   ++ +      +  VY A+I G C +G++  A+     +  +  +PN+  Y 
Sbjct: 192 RTEEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYT 251

Query: 461 VVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
            +I G CK      A  +   M + GL P+ VT+  L +   N G+
Sbjct: 252 ELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGH 297


>gi|356519580|ref|XP_003528450.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
           mitochondrial-like [Glycine max]
          Length = 1012

 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 128/498 (25%), Positives = 246/498 (49%), Gaps = 8/498 (1%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           RV EA      M  RG   ++V  TT++ G  + G+   A ++F  +    ++PN +TY+
Sbjct: 321 RVMEAFNHQSQMVVRGISIDLVLCTTMMDGLFKAGKSKEAEEMFQTILKLNLVPNCVTYT 380

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
            L+ G  +  DVE A  ++ K+     E+E +  N   F+++++   ++G +N+   +  
Sbjct: 381 ALLDGHCKVGDVEFAETVLQKM-----EKEHVLPNVVTFSSIINGYAKKGMLNKAVEVLR 435

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
            M Q   +   F    ++D   R+G++  A+     M+  GL  + + ++ +++ L + G
Sbjct: 436 KMVQMNIMPNVFVYAILLDGYFRTGQHEAAAGFYKEMKSWGLEENNIIFDILLNNLKRSG 495

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
           G   A  L+++ +  G       Y  L++G   E +   A  V+Q M ++KD+    +  
Sbjct: 496 GMKEAQSLIKDILSKGIYLDVFNYSSLMDGYFKEGNESAALSVVQEM-TEKDMQFDVVAY 554

Query: 249 IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 308
             L    L     E  +V   M++    PD +T N+V+N +   G+ E AL +LN+M   
Sbjct: 555 NALTKGLLRLGKYEPKSVFSRMIELGLTPDCVTYNSVMNTYFIQGKTENALDLLNEM-KS 613

Query: 309 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE 368
               P+ VT+  +I GL   G I++ +++L++++   GY P  + +  +L+   R R+ +
Sbjct: 614 YGVMPNMVTYNILIGGLCKTGAIEKVISVLHEMLAV-GYVPTPIIHKFLLKAYSRSRKAD 672

Query: 369 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI 428
              ++   ++ +G+  +   Y  +I  LC      +A     ++V      D   Y A+I
Sbjct: 673 AILQIHKKLVDMGLNLNQMVYNTLITVLCRLGMTKKANVVLTEMVIKGISADIVTYNALI 732

Query: 429 KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLN 488
           +G C    + +A +   +++ SG++PNI  YN +++G     + R+A +++ EMR+ GL 
Sbjct: 733 RGYCTGSHVEKAFNTYSQMLVSGISPNITTYNALLEGLSTNGLMRDADKLVSEMRERGLV 792

Query: 489 PDAVTWRILDKLHGNRGN 506
           P+A T+ IL   HG  GN
Sbjct: 793 PNATTYNILVSGHGRVGN 810



 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 144/539 (26%), Positives = 243/539 (45%), Gaps = 53/539 (9%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C +  V  A  +   M+    +PNVV+++++I+GY + G ++ A +V  +M    +
Sbjct: 383 LDGHCKVGDVEFAETVLQKMEKEHVLPNVVTFSSIINGYAKKGMLNKAVEVLRKMVQMNI 442

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +PN   Y++L+ G  RT   E A       ++ MK    L  NN  F  L+++L R G +
Sbjct: 443 MPNVFVYAILLDGYFRTGQHEAAA----GFYKEMKSW-GLEENNIIFDILLNNLKRSGGM 497

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKR------------ 168
            E   + +D+       + F    ++D   + G    A  VV  M ++            
Sbjct: 498 KEAQSLIKDILSKGIYLDVFNYSSLMDGYFKEGNESAALSVVQEMTEKDMQFDVVAYNAL 557

Query: 169 ----------------------GLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL 206
                                 GLTP  V+YNS+++     G    A  LL E   +G +
Sbjct: 558 TKGLLRLGKYEPKSVFSRMIELGLTPDCVTYNSVMNTYFIQGKTENALDLLNEMKSYGVM 617

Query: 207 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 266
           P+  TY +L+ GLC    +EK   VL  ML+   V    I    L+A    +    +L +
Sbjct: 618 PNMVTYNILIGGLCKTGAIEKVISVLHEMLAVGYVPTPIIHKFLLKAYSRSRKADAILQI 677

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
              ++      + +  NT+I   C++G  ++A  VL +MV  K  + D VT+  +I G  
Sbjct: 678 HKKLVDMGLNLNQMVYNTLITVLCRLGMTKKANVVLTEMVI-KGISADIVTYNALIRGYC 736

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
               +++A N  Y  M   G SP I TYNA+L GL     + +A ++ + M   G+V ++
Sbjct: 737 TGSHVEKAFNT-YSQMLVSGISPNITTYNALLEGLSTNGLMRDADKLVSEMRERGLVPNA 795

Query: 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE 446
           TTY I++ G        ++ + + +++    I     Y  +I+   ++GK+ +A   L E
Sbjct: 796 TTYNILVSGHGRVGNKRDSIKLYCEMITKGFIPTTGTYNVLIQDYAKAGKMRQARELLNE 855

Query: 447 LVDSGVTPNIVCYNVVIDGAC------------KLSMKREAYQILREMRKNGLNPDAVT 493
           ++  G  PN   Y+V+I G C            KLS + EA ++LREM + G  P   T
Sbjct: 856 MLTRGRIPNSSTYDVLICGWCKLSCQPEMDRLLKLSYQNEAKKLLREMCEKGHVPSEST 914



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 122/493 (24%), Positives = 236/493 (47%), Gaps = 8/493 (1%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C    + +   L+  M   G +P+VV+ +++++G CR G++  A  +  EM + G+ PN 
Sbjct: 247 CKHRGIDDFFSLYEQMIMSGVMPDVVTCSSILYGLCRHGKLTEAAMLLREMYNMGLDPNH 306

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           ++Y+ ++  +L++  V  A    F    +M     +S++      ++D L + G   E  
Sbjct: 307 VSYTTIISALLKSGRVMEA----FNHQSQMV-VRGISIDLVLCTTMMDGLFKAGKSKEAE 361

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
            + + + +   V        ++D  C+ G    A  V+  M K  + P++V+++SI++G 
Sbjct: 362 EMFQTILKLNLVPNCVTYTALLDGHCKVGDVEFAETVLQKMEKEHVLPNVVTFSSIINGY 421

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
            K G   +A ++L + +Q   +P+   Y +L++G       E A    + M S    +  
Sbjct: 422 AKKGMLNKAVEVLRKMVQMNIMPNVFVYAILLDGYFRTGQHEAAAGFYKEMKSWGLEENN 481

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
            I +I L  L       E  +++  +L      DV   +++++G+ K G    AL V+ +
Sbjct: 482 IIFDILLNNLKRSGGMKEAQSLIKDILSKGIYLDVFNYSSLMDGYFKEGNESAALSVVQE 541

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
           M   K    D V +  +  GLL +G+ +     ++  M + G +P  VTYN+V+   F  
Sbjct: 542 MTE-KDMQFDVVAYNALTKGLLRLGKYEP--KSVFSRMIELGLTPDCVTYNSVMNTYFIQ 598

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY 424
            + E A ++ N M   GV+ +  TY I+I GLC++  +++      +++    +    ++
Sbjct: 599 GKTENALDLLNEMKSYGVMPNMVTYNILIGGLCKTGAIEKVISVLHEMLAVGYVPTPIIH 658

Query: 425 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484
             ++K   RS K    +    +LVD G+  N + YN +I   C+L M ++A  +L EM  
Sbjct: 659 KFLLKAYSRSRKADAILQIHKKLVDMGLNLNQMVYNTLITVLCRLGMTKKANVVLTEMVI 718

Query: 485 NGLNPDAVTWRIL 497
            G++ D VT+  L
Sbjct: 719 KGISADIVTYNAL 731



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 116/478 (24%), Positives = 222/478 (46%), Gaps = 26/478 (5%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M++   VP++  +  L++ +  +G +     ++ EM  CGV+PN  + ++LV  + +  D
Sbjct: 1   MRALSLVPSLPLWNDLLYEFNASGFVSQVKVLYSEMVLCGVVPNVFSVNLLVHSLCKVGD 60

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
           +  A          +    +   ++  +  +V   C+ G  ++ F +  +M +     + 
Sbjct: 61  LGLA----------LGYLRNSVFDHVTYNTVVWGFCKRGLADQGFGLLSEMVKKGVCFDS 110

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
             C  ++   C+ G    A  ++  +   G+    +  N++V G C+ G   RA  L+E+
Sbjct: 111 VTCNILVKGYCQIGLVQYAEWIMGNLVGGGVPLDAIGLNTLVDGYCEVGLVSRALDLVED 170

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
           G + G  P   TY  LV   C   DL KA  V+  +L  +  D + + N      C ++ 
Sbjct: 171 GWKNGVKPDIVTYNTLVNAFCKRGDLAKAESVVNEILGFRRDDESGVLND-----CGVET 225

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
              L ++         QP V+T  T+I  +CK   I++   +   M+      PD VT +
Sbjct: 226 WDGLRDL---------QPTVVTWTTLIAAYCKHRGIDDFFSLYEQMIMSG-VMPDVVTCS 275

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
           +I++GL   G++ EA  LL + M   G  P  V+Y  ++  L +  RV EA    + M+ 
Sbjct: 276 SILYGLCRHGKLTEAAMLLRE-MYNMGLDPNHVSYTTIISALLKSGRVMEAFNHQSQMVV 334

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
            G+  D      ++DGL ++ +  EA+  +  I+  + + +   Y A++ G C+ G +  
Sbjct: 335 RGISIDLVLCTTMMDGLFKAGKSKEAEEMFQTILKLNLVPNCVTYTALLDGHCKVGDVEF 394

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           A   L ++    V PN+V ++ +I+G  K  M  +A ++LR+M +  + P+   + IL
Sbjct: 395 AETVLQKMEKEHVLPNVVTFSSIINGYAKKGMLNKAVEVLRKMVQMNIMPNVFVYAIL 452



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 120/495 (24%), Positives = 220/495 (44%), Gaps = 28/495 (5%)

Query: 24  GHVP-NVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVER 82
           G VP + +   TL+ GYC  G +  A  + ++    GV P+ +TY+ LV    +  D+ +
Sbjct: 139 GGVPLDAIGLNTLVDGYCEVGLVSRALDLVEDGWKNGVKPDIVTYNTLVNAFCKRGDLAK 198

Query: 83  ANVLMFKLWERMKEEE----------------DLSVNNAAFANLVDSLCREGYVNEVFRI 126
           A  ++ ++    +++E                DL      +  L+ + C+   +++ F +
Sbjct: 199 AESVVNEILGFRRDDESGVLNDCGVETWDGLRDLQPTVVTWTTLIAAYCKHRGIDDFFSL 258

Query: 127 AEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK 186
            E M     + +   C  ++  LCR G+   A+ ++  M   GL P+ VSY +I+  L K
Sbjct: 259 YEQMIMSGVMPDVVTCSSILYGLCRHGKLTEAAMLLREMYNMGLDPNHVSYTTIISALLK 318

Query: 187 HGGCMRAY----QLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
            G  M A+    Q++  GI    +        +++GL      ++A ++ Q +L    V 
Sbjct: 319 SGRVMEAFNHQSQMVVRGISIDLVLC----TTMMDGLFKAGKSKEAEEMFQTILKLNLVP 374

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
                   L   C + +      VL  M +    P+V+T +++ING+ K G + +A++VL
Sbjct: 375 NCVTYTALLDGHCKVGDVEFAETVLQKMEKEHVLPNVVTFSSIINGYAKKGMLNKAVEVL 434

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
             MV      P+   +  ++ G    G+  EA    Y+ M   G     + ++ +L  L 
Sbjct: 435 RKMVQMNI-MPNVFVYAILLDGYFRTGQ-HEAAAGFYKEMKSWGLEENNIIFDILLNNLK 492

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
           R   ++EA+ +   +L  G+  D   Y+ ++DG  +      A     ++       D  
Sbjct: 493 RSGGMKEAQSLIKDILSKGIYLDVFNYSSLMDGYFKEGNESAALSVVQEMTEKDMQFDVV 552

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
            Y A+ KGL R GK +E       +++ G+TP+ V YN V++          A  +L EM
Sbjct: 553 AYNALTKGLLRLGK-YEPKSVFSRMIELGLTPDCVTYNSVMNTYFIQGKTENALDLLNEM 611

Query: 483 RKNGLNPDAVTWRIL 497
           +  G+ P+ VT+ IL
Sbjct: 612 KSYGVMPNMVTYNIL 626



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 99/409 (24%), Positives = 183/409 (44%), Gaps = 26/409 (6%)

Query: 117 EGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVS 176
            G+V++V  +  +M     V   F+   ++ SLC+ G    A   +     R      V+
Sbjct: 23  SGFVSQVKVLYSEMVLCGVVPNVFSVNLLVHSLCKVGDLGLALGYL-----RNSVFDHVT 77

Query: 177 YNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFML 236
           YN++V G CK G   + + LL E ++ G      T  +LV+G C    ++ A  ++  ++
Sbjct: 78  YNTVVWGFCKRGLADQGFGLLSEMVKKGVCFDSVTCNILVKGYCQIGLVQYAEWIMGNLV 137

Query: 237 SKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIE 296
                      N  +   C +   +  L+++    +   +PD++T NT++N FCK G + 
Sbjct: 138 GGGVPLDAIGLNTLVDGYCEVGLVSRALDLVEDGWKNGVKPDIVTYNTLVNAFCKRGDLA 197

Query: 297 EALKVLNDMVAGKF--------------------CAPDAVTFTTIIFGLLNVGRIQEALN 336
           +A  V+N+++  +                       P  VT+TT+I        I +  +
Sbjct: 198 KAESVVNEILGFRRDDESGVLNDCGVETWDGLRDLQPTVVTWTTLIAAYCKHRGIDDFFS 257

Query: 337 LLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 396
           L Y+ M   G  P +VT +++L GL R  ++ EA  +   M  +G+  +  +Y  +I  L
Sbjct: 258 L-YEQMIMSGVMPDVVTCSSILYGLCRHGKLTEAAMLLREMYNMGLDPNHVSYTTIISAL 316

Query: 397 CESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNI 456
            +S ++ EA      +V      D  +   M+ GL ++GK  EA      ++   + PN 
Sbjct: 317 LKSGRVMEAFNHQSQMVVRGISIDLVLCTTMMDGLFKAGKSKEAEEMFQTILKLNLVPNC 376

Query: 457 VCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
           V Y  ++DG CK+     A  +L++M K  + P+ VT+  +   +  +G
Sbjct: 377 VTYTALLDGHCKVGDVEFAETVLQKMEKEHVLPNVVTFSSIINGYAKKG 425



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 78/185 (42%), Gaps = 13/185 (7%)

Query: 326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGV--- 382
            N       + +LY  M   G  P + + N ++  L +         V +  L +G    
Sbjct: 20  FNASGFVSQVKVLYSEMVLCGVVPNVFSVNLLVHSLCK---------VGDLGLALGYLRN 70

Query: 383 -VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAV 441
            V D  TY  V+ G C+    D+      ++V      D+     ++KG C+ G +  A 
Sbjct: 71  SVFDHVTYNTVVWGFCKRGLADQGFGLLSEMVKKGVCFDSVTCNILVKGYCQIGLVQYAE 130

Query: 442 HFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLH 501
             +  LV  GV  + +  N ++DG C++ +   A  ++ +  KNG+ PD VT+  L    
Sbjct: 131 WIMGNLVGGGVPLDAIGLNTLVDGYCEVGLVSRALDLVEDGWKNGVKPDIVTYNTLVNAF 190

Query: 502 GNRGN 506
             RG+
Sbjct: 191 CKRGD 195



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 31/162 (19%)

Query: 4   LCGLSRVG---EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           + G  RVG   ++ KL+ +M ++G +P   +Y  LI  Y + G+M  A ++ +EM   G 
Sbjct: 802 VSGHGRVGNKRDSIKLYCEMITKGFIPTTGTYNVLIQDYAKAGKMRQARELLNEMLTRGR 861

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +PNS TY VL+ G                 W ++  + ++           D L +  Y 
Sbjct: 862 IPNSSTYDVLICG-----------------WCKLSCQPEM-----------DRLLKLSYQ 893

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVV 162
           NE  ++  +M +   V  E    ++  +    G+   A R++
Sbjct: 894 NEAKKLLREMCEKGHVPSESTLMYISSNFSAPGKRDDAKRLL 935


>gi|413948659|gb|AFW81308.1| hypothetical protein ZEAMMB73_549819 [Zea mays]
          Length = 795

 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 129/517 (24%), Positives = 253/517 (48%), Gaps = 12/517 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    + +A  +   M  +G +P+  +Y  +I GYC  G+++ A ++  +M   G+
Sbjct: 242 IDGLCKAQAMDKAVAILQHMFDKGVMPDTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGL 301

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TYS+L++   +      A  +   +  + ++      N+  +  L+     +G +
Sbjct: 302 QPDVVTYSLLIQYYCKIGRCAEARSVFDSMVRKGQKP-----NSTIYHILLHGYATKGAL 356

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +V  + + M +     E  A   +I +  + G    A      MR+ GL P +VSY+++
Sbjct: 357 IDVRDLLDLMIRDGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTV 416

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +H LCK G    A     + +  G  P+  ++  L+ GLC   + +K  ++   M+++  
Sbjct: 417 IHILCKTGRVEDAVYHFNQMVSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGI 476

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                  N  +  LC      E  +    ++    +PDV++ NT+I+G+C +G+++E++K
Sbjct: 477 HPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPDVVSYNTLIDGYCFVGKMDESIK 536

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
            L+ MV+     PD+ T+ +++ G    GR+++AL  LY+ M ++      +T N +L G
Sbjct: 537 QLDRMVSIGL-RPDSWTYNSLLNGYFKNGRVEDALA-LYREMFRKDVKFCAITSNIMLHG 594

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           LF+  R+  A+E++  M+  G      TY  V+ GLCE++ +DEA R ++D+       D
Sbjct: 595 LFQAGRIVAARELYMKMVDRGTQLRIETYNTVLGGLCENSCVDEALRMFEDLRSKEFELD 654

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              ++ +I  L + G+I EA      +V  G  P+++ Y+++I    +  +  E+  +  
Sbjct: 655 VRTFSIVINALLKVGRIDEAKSLFSAMVLRGPVPDVITYSLMIKSHIEEGLLEESDNLFL 714

Query: 481 EMRKNGLNPDA-----VTWRILDKLHGNRGNDFGLRI 512
            M KNG   D+     +  R+L+K    R   +  +I
Sbjct: 715 SMEKNGCAADSHMLNIIVRRLLEKGDVRRAGTYLTKI 751



 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 134/533 (25%), Positives = 245/533 (45%), Gaps = 46/533 (8%)

Query: 4   LCGLSRVGEAHKLFFD-MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCG--- 59
           LC  +R  +A  + F  M   G+ P+V SY  LI G C   +   A ++   M   G   
Sbjct: 136 LCDGNRTDDAMDMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALELLIHMTADGGYN 195

Query: 60  VLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGY 119
             PN ++Y+ ++ G  +  +V++A  L  ++       + L  +   + +L+D LC+   
Sbjct: 196 CSPNVVSYNTVIDGFFKEGEVDKAYFLFHEMMG-----QGLPPDVVTYNSLIDGLCKAQA 250

Query: 120 VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           +++   I + M     + +      MI   C  G+   A R++  M   GL P +V+Y+ 
Sbjct: 251 MDKAVAILQHMFDKGVMPDTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYSL 310

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++   CK G C  A  + +  ++ G  P+   Y +L+ G   +  L   R +L  M+   
Sbjct: 311 LIQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDG 370

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                R  NI + A        + +     M Q   +PDV++ +TVI+  CK GR+E+A+
Sbjct: 371 IPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKTGRVEDAV 430

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
              N MV+    +P+ ++FT++I GL ++G  ++   L ++ M  RG  P  +  N ++ 
Sbjct: 431 YHFNQMVSEGL-SPNIISFTSLIHGLCSIGEWKKVEELAFE-MINRGIHPDAIFMNTIMD 488

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
            L +  RV EA++ F+ ++ IGV  D  +Y  +IDG C   ++DE+ +  D +V      
Sbjct: 489 NLCKEGRVVEAQDFFDMVIHIGVKPDVVSYNTLIDGYCFVGKMDESIKQLDRMVSIGLRP 548

Query: 420 DNYVYAAMIKGLCRSGKIHEA----------------------VHFLYE----------- 446
           D++ Y +++ G  ++G++ +A                      +H L++           
Sbjct: 549 DSWTYNSLLNGYFKNGRVEDALALYREMFRKDVKFCAITSNIMLHGLFQAGRIVAARELY 608

Query: 447 --LVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
             +VD G    I  YN V+ G C+ S   EA ++  ++R      D  T+ I+
Sbjct: 609 MKMVDRGTQLRIETYNTVLGGLCENSCVDEALRMFEDLRSKEFELDVRTFSIV 661



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 140/501 (27%), Positives = 226/501 (45%), Gaps = 23/501 (4%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C L ++ EA +L   M   G  P+VV+Y+ LI  YC+ G    A  VFD M   G  PNS
Sbjct: 281 CSLGQLEEAVRLLKKMSGSGLQPDVVTYSLLIQYYCKIGRCAEARSVFDSMVRKGQKPNS 340

Query: 65  LTYSVLVRGVLRTR---DVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVN 121
             Y +L+ G        DV     LM +        + +   + AF  L+ +  + G V+
Sbjct: 341 TIYHILLHGYATKGALIDVRDLLDLMIR--------DGIPFEHRAFNILICAYAKHGAVD 392

Query: 122 EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
           +      +M Q     +  +   +I  LC++GR   A      M   GL+P+++S+ S++
Sbjct: 393 KAMTAFTEMRQNGLRPDVVSYSTVIHILCKTGRVEDAVYHFNQMVSEGLSPNIISFTSLI 452

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS---K 238
           HGLC  G   +  +L  E I  G  P       +++ LC E  + +A+     ++    K
Sbjct: 453 HGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVK 512

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
            DV      N  +   C +    E +  L  M+    +PD  T N+++NG+ K GR+E+A
Sbjct: 513 PDVVSY---NTLIDGYCFVGKMDESIKQLDRMVSIGLRPDSWTYNSLLNGYFKNGRVEDA 569

Query: 299 LKVLNDMVAG--KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
           L +  +M     KFCA   +T   ++ GL   GRI  A  L Y  M  RG    I TYN 
Sbjct: 570 LALYREMFRKDVKFCA---ITSNIMLHGLFQAGRIVAAREL-YMKMVDRGTQLRIETYNT 625

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416
           VL GL     V+EA  +F  +       D  T++IVI+ L +  ++DEAK  +  +V   
Sbjct: 626 VLGGLCENSCVDEALRMFEDLRSKEFELDVRTFSIVINALLKVGRIDEAKSLFSAMVLRG 685

Query: 417 NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAY 476
            + D   Y+ MIK     G + E+ +    +  +G   +    N+++    +    R A 
Sbjct: 686 PVPDVITYSLMIKSHIEEGLLEESDNLFLSMEKNGCAADSHMLNIIVRRLLEKGDVRRAG 745

Query: 477 QILREMRKNGLNPDAVTWRIL 497
             L ++ +   + +A T  +L
Sbjct: 746 TYLTKIDEKNFSLEASTAALL 766



 Score =  161 bits (408), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 133/540 (24%), Positives = 235/540 (43%), Gaps = 45/540 (8%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHV---PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           LC   +  EA +L   M + G     PNVVSY T+I G+ + GE+D AY +F EM   G+
Sbjct: 172 LCVEKKSQEALELLIHMTADGGYNCSPNVVSYNTVIDGFFKEGEVDKAYFLFHEMMGQGL 231

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TY+ L+ G+ + + +++A  ++  ++++      +  +   +  ++   C  G +
Sbjct: 232 PPDVVTYNSLIDGLCKAQAMDKAVAILQHMFDK-----GVMPDTRTYNIMIRGYCSLGQL 286

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E  R+ + M       +      +I   C+ GR   A  V   M ++G  P+   Y+ +
Sbjct: 287 EEAVRLLKKMSGSGLQPDVVTYSLLIQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHIL 346

Query: 181 VHG--------------------------------LC---KHGGCMRAYQLLEEGIQFGY 205
           +HG                                +C   KHG   +A     E  Q G 
Sbjct: 347 LHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGL 406

Query: 206 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 265
            P   +Y  ++  LC    +E A      M+S+            +  LC I    ++  
Sbjct: 407 RPDVVSYSTVIHILCKTGRVEDAVYHFNQMVSEGLSPNIISFTSLIHGLCSIGEWKKVEE 466

Query: 266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 325
           +   M+     PD I +NT+++  CK GR+ EA     DMV      PD V++ T+I G 
Sbjct: 467 LAFEMINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFF-DMVIHIGVKPDVVSYNTLIDGY 525

Query: 326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 385
             VG++ E++  L + M   G  P   TYN++L G F+  RVE+A  ++  M    V   
Sbjct: 526 CFVGKMDESIKQLDR-MVSIGLRPDSWTYNSLLNGYFKNGRVEDALALYREMFRKDVKFC 584

Query: 386 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY 445
           + T  I++ GL ++ ++  A+  +  +V          Y  ++ GLC +  + EA+    
Sbjct: 585 AITSNIMLHGLFQAGRIVAARELYMKMVDRGTQLRIETYNTVLGGLCENSCVDEALRMFE 644

Query: 446 ELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
           +L       ++  +++VI+   K+    EA  +   M   G  PD +T+ ++ K H   G
Sbjct: 645 DLRSKEFELDVRTFSIVINALLKVGRIDEAKSLFSAMVLRGPVPDVITYSLMIKSHIEEG 704



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 131/501 (26%), Positives = 220/501 (43%), Gaps = 79/501 (15%)

Query: 35  LIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERM 94
           LI  +C  G +D+A+  F      G    ++T + L++G+    D  R +  M  ++ RM
Sbjct: 97  LIRCFCTVGRLDLAFAAFALFLKTGWRVQNVTLNQLIKGLC---DGNRTDDAMDMVFRRM 153

Query: 95  KEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGR 154
            E                     GY  +V                F+   +I  LC   +
Sbjct: 154 PE--------------------LGYTPDV----------------FSYNALIKGLCVEKK 177

Query: 155 NHGASRVVYVMRKRG---LTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHT 211
           +  A  ++  M   G    +P++VSYN+++ G  K G   +AY L  E +  G  P   T
Sbjct: 178 SQEALELLIHMTADGGYNCSPNVVSYNTVIDGFFKEGEVDKAYFLFHEMMGQGLPPDVVT 237

Query: 212 YKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFML 271
           Y  L++GLC    ++KA  +LQ M  K  +  TR  NI +R  C +    E + +L  M 
Sbjct: 238 YNSLIDGLCKAQAMDKAVAILQHMFDKGVMPDTRTYNIMIRGYCSLGQLEEAVRLLKKMS 297

Query: 272 QTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRI 331
            +  QPDV+T + +I  +CK+GR  EA  V + MV  K   P++  +  ++ G    G +
Sbjct: 298 GSGLQPDVVTYSLLIQYYCKIGRCAEARSVFDSMVR-KGQKPNSTIYHILLHGYATKGAL 356

Query: 332 ------------------QEALNLL----------------YQVMPQRGYSPGIVTYNAV 357
                               A N+L                +  M Q G  P +V+Y+ V
Sbjct: 357 IDVRDLLDLMIRDGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTV 416

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 417
           +  L +  RVE+A   FN M+  G+  +  ++  +I GLC   +  + +    +++    
Sbjct: 417 IHILCKTGRVEDAVYHFNQMVSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMI-NRG 475

Query: 418 IHDNYVYA-AMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAY 476
           IH + ++   ++  LC+ G++ EA  F   ++  GV P++V YN +IDG C +    E+ 
Sbjct: 476 IHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPDVVSYNTLIDGYCFVGKMDESI 535

Query: 477 QILREMRKNGLNPDAVTWRIL 497
           + L  M   GL PD+ T+  L
Sbjct: 536 KQLDRMVSIGLRPDSWTYNSL 556



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 118/476 (24%), Positives = 222/476 (46%), Gaps = 11/476 (2%)

Query: 30  VSYTTLIHGYCRTGEMDVAYK-VFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMF 88
           V+   LI G C     D A   VF  M   G  P+  +Y+ L++G+     VE+ +    
Sbjct: 127 VTLNQLIKGLCDGNRTDDAMDMVFRRMPELGYTPDVFSYNALIKGLC----VEKKSQEAL 182

Query: 89  KLWERMKEEE--DLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMI 146
           +L   M  +   + S N  ++  ++D   +EG V++ + +  +M       +      +I
Sbjct: 183 ELLIHMTADGGYNCSPNVVSYNTVIDGFFKEGEVDKAYFLFHEMMGQGLPPDVVTYNSLI 242

Query: 147 DSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL 206
           D LC++     A  ++  M  +G+ P   +YN ++ G C  G    A +LL++    G  
Sbjct: 243 DGLCKAQAMDKAVAILQHMFDKGVMPDTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQ 302

Query: 207 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 266
           P   TY +L++  C      +AR V   M+ K     + I +I L          ++ ++
Sbjct: 303 PDVVTYSLLIQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDL 362

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
           L  M++     +    N +I  + K G +++A+    +M       PD V+++T+I  L 
Sbjct: 363 LDLMIRDGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGL-RPDVVSYSTVIHILC 421

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
             GR+++A+    Q M   G SP I+++ +++ GL  +   ++ +E+   M+  G+  D+
Sbjct: 422 KTGRVEDAVYHFNQ-MVSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDA 480

Query: 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE 446
                ++D LC+  ++ EA+ F+D ++      D   Y  +I G C  GK+ E++  L  
Sbjct: 481 IFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPDVVSYNTLIDGYCFVGKMDESIKQLDR 540

Query: 447 LVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
           +V  G+ P+   YN +++G  K     +A  + REM +  +   A+T  I+  LHG
Sbjct: 541 MVSIGLRPDSWTYNSLLNGYFKNGRVEDALALYREMFRKDVKFCAITSNIM--LHG 594



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 83/263 (31%), Positives = 134/263 (50%), Gaps = 12/263 (4%)

Query: 246 ICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM 305
           I  I +R  C +             L+T  +   +TLN +I G C   R ++A+ ++   
Sbjct: 93  IIGILIRCFCTVGRLDLAFAAFALFLKTGWRVQNVTLNQLIKGLCDGNRTDDAMDMVFRR 152

Query: 306 VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGY--SPGIVTYNAVLRGLFR 363
           +      PD  ++  +I GL    + QEAL LL  +    GY  SP +V+YN V+ G F+
Sbjct: 153 MPELGYTPDVFSYNALIKGLCVEKKSQEALELLIHMTADGGYNCSPNVVSYNTVIDGFFK 212

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA----KRFWDDIVWPSNIH 419
              V++A  +F+ M+G G+  D  TY  +IDGLC++  +D+A    +  +D  V P    
Sbjct: 213 EGEVDKAYFLFHEMMGQGLPPDVVTYNSLIDGLCKAQAMDKAVAILQHMFDKGVMP---- 268

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           D   Y  MI+G C  G++ EAV  L ++  SG+ P++V Y+++I   CK+    EA  + 
Sbjct: 269 DTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYSLLIQYYCKIGRCAEARSVF 328

Query: 480 REMRKNGLNPDAVTWRILDKLHG 502
             M + G  P++  + IL  LHG
Sbjct: 329 DSMVRKGQKPNSTIYHIL--LHG 349



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 65/128 (50%), Gaps = 5/128 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ L  + R+ EA  LF  M  RG VP+V++Y+ +I  +   G ++ +  +F  M   G 
Sbjct: 662 INALLKVGRIDEAKSLFSAMVLRGPVPDVITYSLMIKSHIEEGLLEESDNLFLSMEKNGC 721

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             +S   +++VR +L   DV RA   + K+     +E++ S+  +  A L+  +  + Y 
Sbjct: 722 AADSHMLNIIVRRLLEKGDVRRAGTYLTKI-----DEKNFSLEASTAALLIPIVSEKKYQ 776

Query: 121 NEVFRIAE 128
            EV  + E
Sbjct: 777 KEVKFLPE 784


>gi|15231438|ref|NP_187385.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75204605|sp|Q9SFV9.1|PP218_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g07290, mitochondrial; Flags: Precursor
 gi|6642636|gb|AAF20217.1|AC012395_4 hypothetical protein [Arabidopsis thaliana]
 gi|332641002|gb|AEE74523.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 880

 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 132/471 (28%), Positives = 223/471 (47%), Gaps = 44/471 (9%)

Query: 18  FDMKSR--GHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVL 75
           FD+ S+     PN VSY+ LIHG C  G ++ A+ + D+M   G  P++ TY+VL++ + 
Sbjct: 253 FDVMSKEVTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALC 312

Query: 76  RTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKS 135
               +++A    F L++ M        N   +  L+D LCR+G + E   +   M + + 
Sbjct: 313 DRGLIDKA----FNLFDEMIPR-GCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRI 367

Query: 136 VNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQ 195
                    +I+  C+ GR   A  ++ VM KR   P++ ++N ++ GLC+ G   +A  
Sbjct: 368 FPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVH 427

Query: 196 LLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALC 255
           LL+  +  G  P   +Y VL++GLC E  +  A K+L  M            N +     
Sbjct: 428 LLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSM------------NCF----- 470

Query: 256 LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA 315
                               +PD +T   +IN FCK G+ + A   L  M+  K  + D 
Sbjct: 471 ------------------DIEPDCLTFTAIINAFCKQGKADVASAFLGLMLR-KGISLDE 511

Query: 316 VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN 375
           VT TT+I G+  VG+ ++AL +L  ++  R  +    + N +L  L +  +V+E   +  
Sbjct: 512 VTGTTLIDGVCKVGKTRDALFILETLVKMRILTTP-HSLNVILDMLSKGCKVKEELAMLG 570

Query: 376 CMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG 435
            +  +G+V    TY  ++DGL  S  +  + R  + +     + + Y Y  +I GLC+ G
Sbjct: 571 KINKLGLVPSVVTYTTLVDGLIRSGDITGSFRILELMKLSGCLPNVYPYTIIINGLCQFG 630

Query: 436 KIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG 486
           ++ EA   L  + DSGV+PN V Y V++ G         A + +R M + G
Sbjct: 631 RVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRALETVRAMVERG 681



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 118/493 (23%), Positives = 231/493 (46%), Gaps = 6/493 (1%)

Query: 13  AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVR 72
           A+  +  M++ G V  ++ Y T+++  C+ G  + A     ++   G + +S   + L+ 
Sbjct: 179 AYVTYRRMEADGFVVGMIDYRTIVNALCKNGYTEAAEMFMSKILKIGFVLDSHIGTSLLL 238

Query: 73  GVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQ 132
           G  R  ++  A     K+++ M +E   + N+ +++ L+  LC  G + E F + + M +
Sbjct: 239 GFCRGLNLRDA----LKVFDVMSKEVTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGE 294

Query: 133 GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMR 192
                       +I +LC  G    A  +   M  RG  P++ +Y  ++ GLC+ G    
Sbjct: 295 KGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEE 354

Query: 193 AYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLR 252
           A  +  + ++    PS  TY  L+ G C +  +  A ++L  M  +      R  N  + 
Sbjct: 355 ANGVCRKMVKDRIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELME 414

Query: 253 ALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCA 312
            LC +  P + +++L  ML     PD+++ N +I+G C+ G +  A K+L+ M       
Sbjct: 415 GLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDI-E 473

Query: 313 PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKE 372
           PD +TFT II      G+   A   L  +M ++G S   VT   ++ G+ ++ +  +A  
Sbjct: 474 PDCLTFTAIINAFCKQGKADVASAFL-GLMLRKGISLDEVTGTTLIDGVCKVGKTRDALF 532

Query: 373 VFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLC 432
           +   ++ + ++    +  +++D L +  ++ E       I     +     Y  ++ GL 
Sbjct: 533 ILETLVKMRILTTPHSLNVILDMLSKGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLI 592

Query: 433 RSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAV 492
           RSG I  +   L  +  SG  PN+  Y ++I+G C+     EA ++L  M+ +G++P+ V
Sbjct: 593 RSGDITGSFRILELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHV 652

Query: 493 TWRILDKLHGNRG 505
           T+ ++ K + N G
Sbjct: 653 TYTVMVKGYVNNG 665



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 117/439 (26%), Positives = 210/439 (47%), Gaps = 19/439 (4%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC + R+ EA  L   M  +G  P+  +YT LI   C  G +D A+ +FDEM   G  PN
Sbjct: 276 LCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIPRGCKPN 335

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             TY+VL+ G+ R   +E AN +  K+      ++ +  +   +  L++  C++G V   
Sbjct: 336 VHTYTVLIDGLCRDGKIEEANGVCRKMV-----KDRIFPSVITYNALINGYCKDGRVVPA 390

Query: 124 FRIAEDM------PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
           F +   M      P  ++ NE      +++ LCR G+ + A  ++  M   GL+P +VSY
Sbjct: 391 FELLTVMEKRACKPNVRTFNE------LMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSY 444

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
           N ++ GLC+ G    AY+LL     F   P   T+  ++   C +   + A   L  ML 
Sbjct: 445 NVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAIINAFCKQGKADVASAFLGLMLR 504

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
           K            +  +C +    + L +L  +++ +      +LN +++   K  +++E
Sbjct: 505 KGISLDEVTGTTLIDGVCKVGKTRDALFILETLVKMRILTTPHSLNVILDMLSKGCKVKE 564

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
            L +L  +       P  VT+TT++ GL+  G I  +  +L ++M   G  P +  Y  +
Sbjct: 565 ELAMLGKINKLGL-VPSVVTYTTLVDGLIRSGDITGSFRIL-ELMKLSGCLPNVYPYTII 622

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 417
           + GL +  RVEEA+++ + M   GV  +  TY +++ G   + +LD A      +V    
Sbjct: 623 INGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRALETVRAMVERGY 682

Query: 418 IHDNYVYAAMIKGLCRSGK 436
             ++ +Y+++++G   S K
Sbjct: 683 ELNDRIYSSLLQGFVLSQK 701



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 117/506 (23%), Positives = 234/506 (46%), Gaps = 38/506 (7%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   ++ EA+ +   M      P+V++Y  LI+GYC+ G +  A+++   M     
Sbjct: 343 IDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRAC 402

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN  T++ L+ G+ R     +A      L +RM  +  LS +  ++  L+D LCREG++
Sbjct: 403 KPNVRTFNELMEGLCRVGKPYKA----VHLLKRML-DNGLSPDIVSYNVLIDGLCREGHM 457

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           N  +++   M       +      +I++ C+ G+   AS  + +M ++G++   V+  ++
Sbjct: 458 NTAYKLLSSMNCFDIEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTL 517

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCG----ESDLEKARKVLQFML 236
           + G+CK G    A  +LE  ++   L + H+  V+++ L      + +L    K+ +  L
Sbjct: 518 IDGVCKVGKTRDALFILETLVKMRILTTPHSLNVILDMLSKGCKVKEELAMLGKINKLGL 577

Query: 237 SKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIE 296
               V  T + +  +R+     + T    +L  M  + C P+V     +ING C+ GR+E
Sbjct: 578 VPSVVTYTTLVDGLIRS----GDITGSFRILELMKLSGCLPNVYPYTIIINGLCQFGRVE 633

Query: 297 EALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
           EA K+L+ M      +P+ VT+T ++ G +N G++  AL  + + M +RGY      Y++
Sbjct: 634 EAEKLLSAMQDSGV-SPNHVTYTVMVKGYVNNGKLDRALETV-RAMVERGYELNDRIYSS 691

Query: 357 VLRGLFRLRR---------------VEEAKEVFNCMLGI-----GVVADSTTYAIVIDGL 396
           +L+G    ++                E   E  N ++ +     G ++    +  ++  L
Sbjct: 692 LLQGFVLSQKGIDNSEESTVSDIALRETDPECINELISVVEQLGGCISGLCIF--LVTRL 749

Query: 397 CESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNI 456
           C+  + DE+     + V    +        +++  C   K  + +  +  ++ SG  P+ 
Sbjct: 750 CKEGRTDESNDLVQN-VLERGVFLEKAMDIIMESYCSKKKHTKCMELITLVLKSGFVPSF 808

Query: 457 VCYNVVIDGACKLSMKREAYQILREM 482
             + +VI G  K      A +++ E+
Sbjct: 809 KSFCLVIQGLKKEGDAERARELVMEL 834



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 102/461 (22%), Positives = 195/461 (42%), Gaps = 64/461 (13%)

Query: 6   GLSRVGEAHK---LFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           GL RVG+ +K   L   M   G  P++VSY  LI G CR G M+ AYK+   M    + P
Sbjct: 415 GLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEP 474

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           + LT++ ++    +    + A+  +  +  +      +S++      L+D +C+ G   +
Sbjct: 475 DCLTFTAIINAFCKQGKADVASAFLGLMLRK-----GISLDEVTGTTLIDGVCKVGKTRD 529

Query: 123 VFRIAEDM-------------------PQGKSVNEEFAC----------------GHMID 147
              I E +                    +G  V EE A                   ++D
Sbjct: 530 ALFILETLVKMRILTTPHSLNVILDMLSKGCKVKEELAMLGKINKLGLVPSVVTYTTLVD 589

Query: 148 SLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLP 207
            L RSG   G+ R++ +M+  G  P++  Y  I++GLC+ G    A +LL      G  P
Sbjct: 590 GLIRSGDITGSFRILELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSP 649

Query: 208 SEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCL----IKNPTEL 263
           +  TY V+V+G      L++A + ++ M+ +      RI +  L+   L    I N  E 
Sbjct: 650 NHVTYTVMVKGYVNNGKLDRALETVRAMVERGYELNDRIYSSLLQGFVLSQKGIDNSEES 709

Query: 264 LNVLVFMLQT--QCQPDVITLNTVING------------FCKMGRIEEALKVLNDMVAGK 309
               + + +T  +C  ++I++   + G             CK GR +E+  ++ +++   
Sbjct: 710 TVSDIALRETDPECINELISVVEQLGGCISGLCIFLVTRLCKEGRTDESNDLVQNVLERG 769

Query: 310 FCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEE 369
                A+    I+    +  +  + + L+  V+ + G+ P   ++  V++GL +    E 
Sbjct: 770 VFLEKAMDI--IMESYCSKKKHTKCMELITLVL-KSGFVPSFKSFCLVIQGLKKEGDAER 826

Query: 370 AKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD 410
           A+E+   +L    V + +     ++ L E ++  +     D
Sbjct: 827 ARELVMELLTSNGVVEKSGVLTYVECLMEGDETGDCSEVID 867



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 66/292 (22%), Positives = 131/292 (44%), Gaps = 55/292 (18%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D L    +V E   +   +   G VP+VV+YTTL+ G  R+G++  ++++ + M+  G 
Sbjct: 553 LDMLSKGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDITGSFRILELMKLSGC 612

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWE---------------------------- 92
           LPN   Y++++ G+ +   VE A  L+  + +                            
Sbjct: 613 LPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRALE 672

Query: 93  --RMKEEEDLSVNNAAFANLVDS--LCREGYVNE----VFRIAEDMPQGKSVNEEFA--- 141
             R   E    +N+  +++L+    L ++G  N     V  IA      + +NE  +   
Sbjct: 673 TVRAMVERGYELNDRIYSSLLQGFVLSQKGIDNSEESTVSDIALRETDPECINELISVVE 732

Query: 142 ---------CGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLC---KHGG 189
                    C  ++  LC+ GR   ++ +V  + +RG+     + + I+   C   KH  
Sbjct: 733 QLGGCISGLCIFLVTRLCKEGRTDESNDLVQNVLERGVFLE-KAMDIIMESYCSKKKHTK 791

Query: 190 CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
           CM    L+   ++ G++PS  ++ ++++GL  E D E+AR+++  +L+   V
Sbjct: 792 CMELITLV---LKSGFVPSFKSFCLVIQGLKKEGDAERARELVMELLTSNGV 840



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 87/179 (48%), Gaps = 6/179 (3%)

Query: 332 QEALNLLYQVMPQR---GYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTT 388
           +E L L+Y     R   G+      Y+++L  L +L     A   +  M   G V     
Sbjct: 138 KEMLKLMYCFDELREVFGFRLNYPCYSSLLMSLAKLDLGFLAYVTYRRMEADGFVVGMID 197

Query: 389 YAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELV 448
           Y  +++ LC++   + A+ F   I+    + D+++  +++ G CR   + +A+  +++++
Sbjct: 198 YRTIVNALCKNGYTEAAEMFMSKILKIGFVLDSHIGTSLLLGFCRGLNLRDALK-VFDVM 256

Query: 449 DSGVT--PNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
              VT  PN V Y+++I G C++    EA+ +  +M + G  P   T+ +L K   +RG
Sbjct: 257 SKEVTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRG 315


>gi|414865374|tpg|DAA43931.1| TPA: hypothetical protein ZEAMMB73_168023 [Zea mays]
          Length = 793

 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 129/472 (27%), Positives = 230/472 (48%), Gaps = 8/472 (1%)

Query: 27  PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVL 86
           PN  ++  L+H +C  G +  A     +M+  G+ P+++TY+ L+    R   +  A  L
Sbjct: 207 PNHYTFNLLVHTHCSKGTLADALSTLSKMQGFGLSPDAVTYNTLLNAHCRKGMLGEARTL 266

Query: 87  MFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMI 146
           +     RMK+E  +    A +  LV +  R G++ +   + E M       + +    + 
Sbjct: 267 L----ARMKKE-GIVPTRATYNTLVSAYARLGWIKQATDVVEAMTAFGFEPDLWTYNVLA 321

Query: 147 DSLCRSGRNHGASRVVYVMRKRGL-TPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY 205
             LC++G+   A ++   M + G+ +P +V+YN++V    K      A  LLEE  + G 
Sbjct: 322 AGLCQAGKVDEAFKLKDEMEQLGIVSPDVVTYNTLVDACFKCQRSSDALNLLEEMREKGV 381

Query: 206 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 265
             S  T+ ++V+GLC E  LE+A   L+ M  +         N  + A C   N  +   
Sbjct: 382 KSSLVTHNIIVKGLCREGQLEEALGRLEMMTEEGLTPDVITYNTLIDASCKAGNVAKAFV 441

Query: 266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 325
           ++  M+++  + D  TLNT++   CK  R EEA ++L       F  PD V++ T++   
Sbjct: 442 LMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEAEELLRAPPQRGFV-PDEVSYGTVMAAY 500

Query: 326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 385
               + + AL  L+  M +R  +P I TYN +++GL  + ++ EA +  N ++ +G+V D
Sbjct: 501 FKEYKPEPAL-CLWDEMIKRKLTPSISTYNTLIKGLSTMGKLTEAIDKLNELMEMGLVPD 559

Query: 386 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY 445
            TTY I+I   C+   L++A +F + +V  S   D      ++ GLC  G++ +A+    
Sbjct: 560 DTTYNIIIHAYCKEGDLEKAFQFHNKMVENSFKPDVVTCNTLMNGLCLYGRLEKAMKLFE 619

Query: 446 ELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
             V+ G   +++ YN +I   CK +    A +   +M   GL PD  T+ +L
Sbjct: 620 SWVEKGKKVDVITYNTLIQALCKDNDVDTALRFFADMEVRGLQPDVFTYNVL 671



 Score =  178 bits (451), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 129/486 (26%), Positives = 232/486 (47%), Gaps = 14/486 (2%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C    + +A      M+  G  P+ V+Y TL++ +CR G +  A  +   M+  G++P  
Sbjct: 220 CSKGTLADALSTLSKMQGFGLSPDAVTYNTLLNAHCRKGMLGEARTLLARMKKEGIVPTR 279

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKE---EEDLSVNNAAFANLVDSLCREGYVN 121
            TY+ LV    R   +++A  ++    E M     E DL   N     L   LC+ G V+
Sbjct: 280 ATYNTLVSAYARLGWIKQATDVV----EAMTAFGFEPDLWTYNV----LAAGLCQAGKVD 331

Query: 122 EVFRIAEDMPQGKSVNEEFAC-GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           E F++ ++M Q   V+ +      ++D+  +  R+  A  ++  MR++G+  SLV++N I
Sbjct: 332 EAFKLKDEMEQLGIVSPDVVTYNTLVDACFKCQRSSDALNLLEEMREKGVKSSLVTHNII 391

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           V GLC+ G    A   LE   + G  P   TY  L++  C   ++ KA  ++  M+    
Sbjct: 392 VKGLCREGQLEEALGRLEMMTEEGLTPDVITYNTLIDASCKAGNVAKAFVLMDEMVRSGL 451

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
              T   N  L  LC  K   E   +L    Q    PD ++  TV+  + K  + E AL 
Sbjct: 452 KMDTFTLNTLLYNLCKEKRYEEAEELLRAPPQRGFVPDEVSYGTVMAAYFKEYKPEPALC 511

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           + ++M+  K   P   T+ T+I GL  +G++ EA++ L ++M + G  P   TYN ++  
Sbjct: 512 LWDEMIKRKL-TPSISTYNTLIKGLSTMGKLTEAIDKLNELM-EMGLVPDDTTYNIIIHA 569

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
             +   +E+A +  N M+      D  T   +++GLC   +L++A + ++  V      D
Sbjct: 570 YCKEGDLEKAFQFHNKMVENSFKPDVVTCNTLMNGLCLYGRLEKAMKLFESWVEKGKKVD 629

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              Y  +I+ LC+   +  A+ F  ++   G+ P++  YNV++    +     EA ++L 
Sbjct: 630 VITYNTLIQALCKDNDVDTALRFFADMEVRGLQPDVFTYNVLLSALSEAGRSVEAQKMLH 689

Query: 481 EMRKNG 486
           ++ ++G
Sbjct: 690 KLNESG 695



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 137/531 (25%), Positives = 240/531 (45%), Gaps = 46/531 (8%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C    +GEA  L   MK  G VP   +Y TL+  Y R G +  A  V + M   G  P+ 
Sbjct: 255 CRKGMLGEARTLLARMKKEGIVPTRATYNTLVSAYARLGWIKQATDVVEAMTAFGFEPDL 314

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
            TY+VL  G+ +   V+ A    FKL + M++   +S +   +  LVD+  +    ++  
Sbjct: 315 WTYNVLAAGLCQAGKVDEA----FKLKDEMEQLGIVSPDVVTYNTLVDACFKCQRSSDAL 370

Query: 125 RIAEDMPQGKSVNEEFACGHMI-DSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            + E+M + K V       ++I   LCR G+   A   + +M + GLTP +++YN+++  
Sbjct: 371 NLLEEM-REKGVKSSLVTHNIIVKGLCREGQLEEALGRLEMMTEEGLTPDVITYNTLIDA 429

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQF--------- 234
            CK G   +A+ L++E ++ G      T   L+  LC E   E+A ++L+          
Sbjct: 430 SCKAGNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEAEELLRAPPQRGFVPD 489

Query: 235 --------------------------MLSKKDVDRTRICNIYLRALCLIKNPTELLNVLV 268
                                     M+ +K        N  ++ L  +   TE ++ L 
Sbjct: 490 EVSYGTVMAAYFKEYKPEPALCLWDEMIKRKLTPSISTYNTLIKGLSTMGKLTEAIDKLN 549

Query: 269 FMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNV 328
            +++    PD  T N +I+ +CK G +E+A +  N MV   F  PD VT  T++ GL   
Sbjct: 550 ELMEMGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMVENSF-KPDVVTCNTLMNGLCLY 608

Query: 329 GRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTT 388
           GR+++A+ L ++   ++G    ++TYN +++ L +   V+ A   F  M   G+  D  T
Sbjct: 609 GRLEKAMKL-FESWVEKGKKVDVITYNTLIQALCKDNDVDTALRFFADMEVRGLQPDVFT 667

Query: 389 YAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL--CRSGKIHEAVHFLYE 446
           Y +++  L E+ +  EA++    +     ++  + Y ++   +    +GK  E V    E
Sbjct: 668 YNVLLSALSEAGRSVEAQKMLHKLNESGKLYGRFFYPSIKSSVEAVETGKDPE-VKSDIE 726

Query: 447 LVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            V +    +   YN  I   C     +EA  +L EM + G++ D  T+  L
Sbjct: 727 SVGNTQGDDQESYNKYIKELCIGGQLKEAKAVLDEMMQKGMSVDNSTYITL 777



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 126/473 (26%), Positives = 212/473 (44%), Gaps = 50/473 (10%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHV-PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           LC   +V EA KL  +M+  G V P+VV+Y TL+    +      A  + +EMR  GV  
Sbjct: 324 LCQAGKVDEAFKLKDEMEQLGIVSPDVVTYNTLVDACFKCQRSSDALNLLEEMREKGVKS 383

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           + +T++++V+G+ R   +E A   + +L   M  EE L+ +   +  L+D+ C+ G V +
Sbjct: 384 SLVTHNIIVKGLCREGQLEEA---LGRL--EMMTEEGLTPDVITYNTLIDASCKAGNVAK 438

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGR---------------------NHGASRV 161
            F + ++M +     + F    ++ +LC+  R                     ++G    
Sbjct: 439 AFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEAEELLRAPPQRGFVPDEVSYGTVMA 498

Query: 162 VYV--------------MRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLP 207
            Y               M KR LTPS+ +YN+++ GL   G    A   L E ++ G +P
Sbjct: 499 AYFKEYKPEPALCLWDEMIKRKLTPSISTYNTLIKGLSTMGKLTEAIDKLNELMEMGLVP 558

Query: 208 SEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVL 267
            + TY +++   C E DLEKA +    M+          CN  +  LCL     + + + 
Sbjct: 559 DDTTYNIIIHAYCKEGDLEKAFQFHNKMVENSFKPDVVTCNTLMNGLCLYGRLEKAMKLF 618

Query: 268 VFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLN 327
              ++   + DVIT NT+I   CK   ++ AL+   DM   +   PD  T+  ++  L  
Sbjct: 619 ESWVEKGKKVDVITYNTLIQALCKDNDVDTALRFFADMEV-RGLQPDVFTYNVLLSALSE 677

Query: 328 VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK--EVFNCMLGIGVVA- 384
            GR  EA  +L++ + + G   G   Y ++   +     VE  K  EV + +  +G    
Sbjct: 678 AGRSVEAQKMLHK-LNESGKLYGRFFYPSIKSSV---EAVETGKDPEVKSDIESVGNTQG 733

Query: 385 -DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGK 436
            D  +Y   I  LC   QL EAK   D+++      DN  Y  +++GL +  K
Sbjct: 734 DDQESYNKYIKELCIGGQLKEAKAVLDEMMQKGMSVDNSTYITLMEGLIKRQK 786



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 91/330 (27%), Positives = 148/330 (44%), Gaps = 1/330 (0%)

Query: 170 LTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKAR 229
           L P+  ++N +VH  C  G    A   L +   FG  P   TY  L+   C +  L +AR
Sbjct: 205 LHPNHYTFNLLVHTHCSKGTLADALSTLSKMQGFGLSPDAVTYNTLLNAHCRKGMLGEAR 264

Query: 230 KVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGF 289
            +L  M  +  V      N  + A   +    +  +V+  M     +PD+ T N +  G 
Sbjct: 265 TLLARMKKEGIVPTRATYNTLVSAYARLGWIKQATDVVEAMTAFGFEPDLWTYNVLAAGL 324

Query: 290 CKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSP 349
           C+ G+++EA K+ ++M      +PD VT+ T++       R  +ALNLL + M ++G   
Sbjct: 325 CQAGKVDEAFKLKDEMEQLGIVSPDVVTYNTLVDACFKCQRSSDALNLLEE-MREKGVKS 383

Query: 350 GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFW 409
            +VT+N +++GL R  ++EEA      M   G+  D  TY  +ID  C++  + +A    
Sbjct: 384 SLVTHNIIVKGLCREGQLEEALGRLEMMTEEGLTPDVITYNTLIDASCKAGNVAKAFVLM 443

Query: 410 DDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKL 469
           D++V      D +    ++  LC+  +  EA   L      G  P+ V Y  V+    K 
Sbjct: 444 DEMVRSGLKMDTFTLNTLLYNLCKEKRYEEAEELLRAPPQRGFVPDEVSYGTVMAAYFKE 503

Query: 470 SMKREAYQILREMRKNGLNPDAVTWRILDK 499
                A  +  EM K  L P   T+  L K
Sbjct: 504 YKPEPALCLWDEMIKRKLTPSISTYNTLIK 533



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 123/253 (48%), Gaps = 11/253 (4%)

Query: 259 NPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTF 318
           +P   L+    ++  +  P+  T N +++  C  G + +AL  L+ M  G   +PDAVT+
Sbjct: 189 SPQASLDAFHSLIALRLHPNHYTFNLLVHTHCSKGTLADALSTLSKM-QGFGLSPDAVTY 247

Query: 319 TTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCML 378
            T++      G + EA  LL + M + G  P   TYN ++    RL  +++A +V   M 
Sbjct: 248 NTLLNAHCRKGMLGEARTLLAR-MKKEGIVPTRATYNTLVSAYARLGWIKQATDVVEAMT 306

Query: 379 GIGVVADSTTYAIVIDGLCESNQLDEAKRFWDD-----IVWPSNIHDNYVYAAMIKGLCR 433
             G   D  TY ++  GLC++ ++DEA +  D+     IV P    D   Y  ++    +
Sbjct: 307 AFGFEPDLWTYNVLAAGLCQAGKVDEAFKLKDEMEQLGIVSP----DVVTYNTLVDACFK 362

Query: 434 SGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVT 493
             +  +A++ L E+ + GV  ++V +N+++ G C+     EA   L  M + GL PD +T
Sbjct: 363 CQRSSDALNLLEEMREKGVKSSLVTHNIIVKGLCREGQLEEALGRLEMMTEEGLTPDVIT 422

Query: 494 WRILDKLHGNRGN 506
           +  L       GN
Sbjct: 423 YNTLIDASCKAGN 435



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 86/189 (45%), Gaps = 10/189 (5%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M+ LC   R+ +A KLF     +G   +V++Y TLI   C+  ++D A + F +M   G+
Sbjct: 602 MNGLCLYGRLEKAMKLFESWVEKGKKVDVITYNTLIQALCKDNDVDTALRFFADMEVRGL 661

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDL---SVNNAAFANLVDSLCRE 117
            P+  TY+VL+  +        A  ++ KL E  K        S+ ++  A         
Sbjct: 662 QPDVFTYNVLLSALSEAGRSVEAQKMLHKLNESGKLYGRFFYPSIKSSVEA------VET 715

Query: 118 GYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
           G   EV    E +   +  ++E +    I  LC  G+   A  V+  M ++G++    +Y
Sbjct: 716 GKDPEVKSDIESVGNTQGDDQE-SYNKYIKELCIGGQLKEAKAVLDEMMQKGMSVDNSTY 774

Query: 178 NSIVHGLCK 186
            +++ GL K
Sbjct: 775 ITLMEGLIK 783


>gi|449476381|ref|XP_004154721.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17140-like [Cucumis sativus]
          Length = 875

 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 148/541 (27%), Positives = 236/541 (43%), Gaps = 69/541 (12%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +  LC +  +  A ++F  M  +G  PN  S   L+ GYCR G       + DEMR  G 
Sbjct: 160 ISALCEMGYLENAREVFDKMSEKGCKPNEFSLGILVRGYCRAGLHSHGIDLLDEMRSSGA 219

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           LPN + Y+ ++  +      E   V   KL E+M+E   LS +   F   + +LC+ G +
Sbjct: 220 LPNRVAYNTVISSLCG----EGQTVEAEKLVEKMREV-GLSPDIVTFNCRIAALCKSGQI 274

Query: 121 NEVFRIAEDM--------PQGKSVN-----EEFACGHMIDS------------------- 148
            E  RI  DM        P+  +V      E F    M +                    
Sbjct: 275 LEASRIFRDMQIDEEMGLPKPNTVTYNLMLEGFCSEGMFEEARAIFDSMKNSETLSLRSY 334

Query: 149 ------LCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQ 202
                 L RSG+   A  ++  M ++ + P+L SYN +VHGLCK+G    A  +L    +
Sbjct: 335 NIWMLGLVRSGKLLEAHLILNEMAEKNIKPNLYSYNILVHGLCKYGMFSDARSILGLMRE 394

Query: 203 FGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTE 262
            G  P   TY  L+ G C    + +A  VL+ M+          CNI L +L      +E
Sbjct: 395 SGVAPDTVTYSTLLHGYCRRGKILEANYVLREMIQVGCFPNMYTCNILLHSLWKEGRASE 454

Query: 263 LLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA--------------- 307
             ++L  M +     D +T NT+ING CK G +++A+++++ M                 
Sbjct: 455 AEDLLQMMNERGYGLDNVTCNTMINGLCKAGNLDKAIEIVSGMWTRGSASLGNLGNSFID 514

Query: 308 -------GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
                  GK C PD++T+ TII GL  VGR+ EA   L +++ ++  SP  + ++  +  
Sbjct: 515 LFDIRNNGKKCLPDSITYATIIGGLCKVGRVDEAKKKLLEMIGKK-LSPDSLIFDTFIYN 573

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
             +  ++  A  V   M   G      TY  +I GL   NQ+ E     D++       +
Sbjct: 574 YCKQGKLSSAFRVLKEMEKKGCNKSLRTYNSLIQGLGSENQIFEIYGLMDEMKERGIFPN 633

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDG---ACKLSMKREAYQ 477
            Y Y  +I  L   GK+ +A   L E++  G++PNI  + ++I     AC     +E ++
Sbjct: 634 VYTYNNIISCLSEGGKLKDATCLLDEMLQKGISPNIYTFRILIGAFFKACDFGAAQELFE 693

Query: 478 I 478
           I
Sbjct: 694 I 694



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 140/568 (24%), Positives = 252/568 (44%), Gaps = 71/568 (12%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMR---H 57
           +  LCG  +  EA KL   M+  G  P++V++   I   C++G++  A ++F +M+    
Sbjct: 230 ISSLCGEGQTVEAEKLVEKMREVGLSPDIVTFNCRIAALCKSGQILEASRIFRDMQIDEE 289

Query: 58  CGVL-PNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCR 116
            G+  PN++TY++++ G       E A  +    ++ MK  E LS+ +     L   L R
Sbjct: 290 MGLPKPNTVTYNLMLEGFCSEGMFEEARAI----FDSMKNSETLSLRSYNIWML--GLVR 343

Query: 117 EGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVS 176
            G + E   I  +M +       ++   ++  LC+ G    A  ++ +MR+ G+ P  V+
Sbjct: 344 SGKLLEAHLILNEMAEKNIKPNLYSYNILVHGLCKYGMFSDARSILGLMRESGVAPDTVT 403

Query: 177 YNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFML 236
           Y++++HG C+ G  + A  +L E IQ G  P+ +T  +L+  L  E    +A  +LQ M 
Sbjct: 404 YSTLLHGYCRRGKILEANYVLREMIQVGCFPNMYTCNILLHSLWKEGRASEAEDLLQMMN 463

Query: 237 SKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQ-----------------------T 273
            +        CN  +  LC   N  + + ++  M                          
Sbjct: 464 ERGYGLDNVTCNTMINGLCKAGNLDKAIEIVSGMWTRGSASLGNLGNSFIDLFDIRNNGK 523

Query: 274 QCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQE 333
           +C PD IT  T+I G CK+GR++EA K L +M+ GK  +PD++ F T I+     G++  
Sbjct: 524 KCLPDSITYATIIGGLCKVGRVDEAKKKLLEMI-GKKLSPDSLIFDTFIYNYCKQGKLSS 582

Query: 334 ALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVI 393
           A  +L + M ++G +  + TYN++++GL    ++ E   + + M   G+  +  TY  +I
Sbjct: 583 AFRVLKE-MEKKGCNKSLRTYNSLIQGLGSENQIFEIYGLMDEMKERGIFPNVYTYNNII 641

Query: 394 DGLCESNQLDEAKRFWDDIVW---PSNI-------------------------------H 419
             L E  +L +A    D+++      NI                               H
Sbjct: 642 SCLSEGGKLKDATCLLDEMLQKGISPNIYTFRILIGAFFKACDFGAAQELFEIALSLCGH 701

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
              +Y+ M   L   G+  +A       +D  +      Y  +I+  CK     +A  IL
Sbjct: 702 KESLYSFMFNELLAGGETLKAKELFEAALDRSLALKNFLYRDLIEKLCKDGKLDDASFIL 761

Query: 480 REMRKNGLNPDAVTW-RILDKLHGNRGN 506
            +M     + D  ++  ++D+L G RG+
Sbjct: 762 HKMMDKQYSFDPASFMPVIDEL-GKRGS 788



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 123/506 (24%), Positives = 217/506 (42%), Gaps = 71/506 (14%)

Query: 4   LCGLSRVG---EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           + GL R G   EAH +  +M  +   PN+ SY  L+HG C+ G    A  +   MR  GV
Sbjct: 338 MLGLVRSGKLLEAHLILNEMAEKNIKPNLYSYNILVHGLCKYGMFSDARSILGLMRESGV 397

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+++TYS L+ G                                         CR G +
Sbjct: 398 APDTVTYSTLLHGY----------------------------------------CRRGKI 417

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E   +  +M Q       + C  ++ SL + GR   A  ++ +M +RG     V+ N++
Sbjct: 418 LEANYVLREMIQVGCFPNMYTCNILLHSLWKEGRASEAEDLLQMMNERGYGLDNVTCNTM 477

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGY-----------------------LPSEHTYKVLVE 217
           ++GLCK G   +A +++      G                        LP   TY  ++ 
Sbjct: 478 INGLCKAGNLDKAIEIVSGMWTRGSASLGNLGNSFIDLFDIRNNGKKCLPDSITYATIIG 537

Query: 218 GLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQP 277
           GLC    +++A+K L  M+ KK    + I + ++   C     +    VL  M +  C  
Sbjct: 538 GLCKVGRVDEAKKKLLEMIGKKLSPDSLIFDTFIYNYCKQGKLSSAFRVLKEMEKKGCNK 597

Query: 278 DVITLNTVINGFCKMGRIEEALKVLNDMVA-GKFCAPDAVTFTTIIFGLLNVGRIQEALN 336
            + T N++I G     +I E   ++++M   G F  P+  T+  II  L   G++++A  
Sbjct: 598 SLRTYNSLIQGLGSENQIFEIYGLMDEMKERGIF--PNVYTYNNIISCLSEGGKLKDATC 655

Query: 337 LLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 396
           LL +++ Q+G SP I T+  ++   F+      A+E+F   L +    +S  Y+ + + L
Sbjct: 656 LLDEML-QKGISPNIYTFRILIGAFFKACDFGAAQELFEIALSLCGHKESL-YSFMFNEL 713

Query: 397 CESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNI 456
               +  +AK  ++  +  S    N++Y  +I+ LC+ GK+ +A   L++++D   + + 
Sbjct: 714 LAGGETLKAKELFEAALDRSLALKNFLYRDLIEKLCKDGKLDDASFILHKMMDKQYSFDP 773

Query: 457 VCYNVVIDGACKLSMKREAYQILREM 482
             +  VID   K   K  A +    M
Sbjct: 774 ASFMPVIDELGKRGSKHAADEFAERM 799



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 95/381 (24%), Positives = 159/381 (41%), Gaps = 40/381 (10%)

Query: 116 REGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLV 175
           +E  V+ V  + +DM   K   + +    +I +LC  G    A  V   M ++G  P+  
Sbjct: 130 KESRVDCVIWLYKDMAVAKVKPQTYTFNLLISALCEMGYLENAREVFDKMSEKGCKPNEF 189

Query: 176 SYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM 235
           S   +V G C+ G       LL+E    G LP+   Y  ++  LCGE    +A K+++  
Sbjct: 190 SLGILVRGYCRAGLHSHGIDLLDEMRSSGALPNRVAYNTVISSLCGEGQTVEAEKLVE-- 247

Query: 236 LSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 295
                                             M +    PD++T N  I   CK G+I
Sbjct: 248 ---------------------------------KMREVGLSPDIVTFNCRIAALCKSGQI 274

Query: 296 EEALKVLNDMVAGK---FCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIV 352
            EA ++  DM   +      P+ VT+  ++ G  + G  +EA  +   +      S  + 
Sbjct: 275 LEASRIFRDMQIDEEMGLPKPNTVTYNLMLEGFCSEGMFEEARAIFDSMKNSETLS--LR 332

Query: 353 TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI 412
           +YN  + GL R  ++ EA  + N M    +  +  +Y I++ GLC+     +A+     +
Sbjct: 333 SYNIWMLGLVRSGKLLEAHLILNEMAEKNIKPNLYSYNILVHGLCKYGMFSDARSILGLM 392

Query: 413 VWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMK 472
                  D   Y+ ++ G CR GKI EA + L E++  G  PN+   N+++    K    
Sbjct: 393 RESGVAPDTVTYSTLLHGYCRRGKILEANYVLREMIQVGCFPNMYTCNILLHSLWKEGRA 452

Query: 473 REAYQILREMRKNGLNPDAVT 493
            EA  +L+ M + G   D VT
Sbjct: 453 SEAEDLLQMMNERGYGLDNVT 473



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 80/264 (30%), Positives = 135/264 (51%), Gaps = 9/264 (3%)

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
           +T   N+ + ALC +        V   M +  C+P+  +L  ++ G+C+ G     + +L
Sbjct: 152 QTYTFNLLISALCEMGYLENAREVFDKMSEKGCKPNEFSLGILVRGYCRAGLHSHGIDLL 211

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
           ++M +     P+ V + T+I  L   G+  EA  L+ + M + G SP IVT+N  +  L 
Sbjct: 212 DEMRSSG-ALPNRVAYNTVISSLCGEGQTVEAEKLV-EKMREVGLSPDIVTFNCRIAALC 269

Query: 363 RLRRVEEAKEVFNCML---GIGVVADST-TYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
           +  ++ EA  +F  M     +G+   +T TY ++++G C     +EA+  +D +   S  
Sbjct: 270 KSGQILEASRIFRDMQIDEEMGLPKPNTVTYNLMLEGFCSEGMFEEARAIFDSMK-NSET 328

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI 478
                Y   + GL RSGK+ EA   L E+ +  + PN+  YN+++ G CK  M  +A  I
Sbjct: 329 LSLRSYNIWMLGLVRSGKLLEAHLILNEMAEKNIKPNLYSYNILVHGLCKYGMFSDARSI 388

Query: 479 LREMRKNGLNPDAVTWRILDKLHG 502
           L  MR++G+ PD VT+  L  LHG
Sbjct: 389 LGLMRESGVAPDTVTYSTL--LHG 410



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 87/176 (49%), Gaps = 1/176 (0%)

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVT-YNAVLRGLFRLRRVEEAKEVFNCML 378
           +++  L ++G ++ A++    +  +  + P  ++ YN + R   +  RV+    ++  M 
Sbjct: 86  SLVRTLADLGLLENAISQFRSLRDRFPHDPPPISFYNLLFRCSLKESRVDCVIWLYKDMA 145

Query: 379 GIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIH 438
              V   + T+ ++I  LCE   L+ A+  +D +       + +    +++G CR+G   
Sbjct: 146 VAKVKPQTYTFNLLISALCEMGYLENAREVFDKMSEKGCKPNEFSLGILVRGYCRAGLHS 205

Query: 439 EAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
             +  L E+  SG  PN V YN VI   C      EA +++ +MR+ GL+PD VT+
Sbjct: 206 HGIDLLDEMRSSGALPNRVAYNTVISSLCGEGQTVEAEKLVEKMREVGLSPDIVTF 261


>gi|15232008|ref|NP_187518.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207466|sp|Q9SS81.1|PP221_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g09060
 gi|5923671|gb|AAD56322.1|AC009326_9 hypothetical protein [Arabidopsis thaliana]
 gi|332641194|gb|AEE74715.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 687

 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 128/492 (26%), Positives = 238/492 (48%), Gaps = 14/492 (2%)

Query: 12  EAHKLFFD-MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVL 70
           E  + F D M   G  P+V SY+T+I+   + G++D A ++FDEM   GV P+   Y++L
Sbjct: 166 EKARGFLDWMWKEGFKPDVFSYSTVINDLAKAGKLDDALELFDEMSERGVAPDVTCYNIL 225

Query: 71  VRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDM 130
           + G L+ +D + A     +LW+R+ E+  +  N      ++  L + G V++  +I E M
Sbjct: 226 IDGFLKEKDHKTA----MELWDRLLEDSSVYPNVKTHNIMISGLSKCGRVDDCLKIWERM 281

Query: 131 PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG- 189
            Q +   + +    +I  LC +G    A  V   + +R  +  +V+YN+++ G C+ G  
Sbjct: 282 KQNEREKDLYTYSSLIHGLCDAGNVDKAESVFNELDERKASIDVVTYNTMLGGFCRCGKI 341

Query: 190 --CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC 247
              +  ++++E       +    +Y +L++GL     +++A  + + M +K         
Sbjct: 342 KESLELWRIMEHKNSVNIV----SYNILIKGLLENGKIDEATMIWRLMPAKGYAADKTTY 397

Query: 248 NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA 307
            I++  LC+     + L V+  +  +    DV    ++I+  CK  R+EEA  ++ +M +
Sbjct: 398 GIFIHGLCVNGYVNKALGVMQEVESSGGHLDVYAYASIIDCLCKKKRLEEASNLVKEM-S 456

Query: 308 GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRV 367
                 ++     +I GL+   R+ EA +   + M + G  P +V+YN ++ GL +  + 
Sbjct: 457 KHGVELNSHVCNALIGGLIRDSRLGEA-SFFLREMGKNGCRPTVVSYNILICGLCKAGKF 515

Query: 368 EEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAM 427
            EA      ML  G   D  TY+I++ GLC   ++D A   W   +      D  ++  +
Sbjct: 516 GEASAFVKEMLENGWKPDLKTYSILLCGLCRDRKIDLALELWHQFLQSGLETDVMMHNIL 575

Query: 428 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
           I GLC  GK+ +A+  +  +     T N+V YN +++G  K+     A  I   M K GL
Sbjct: 576 IHGLCSVGKLDDAMTVMANMEHRNCTANLVTYNTLMEGFFKVGDSNRATVIWGYMYKMGL 635

Query: 488 NPDAVTWRILDK 499
            PD +++  + K
Sbjct: 636 QPDIISYNTIMK 647



 Score =  164 bits (415), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 124/478 (25%), Positives = 221/478 (46%), Gaps = 50/478 (10%)

Query: 24  GHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERA 83
           G  P + SY TL++ +    +      +F      GV PN  TY+VL++   + ++ E+A
Sbjct: 109 GCEPAIRSYNTLLNAFVEAKQWVKVESLFAYFETAGVAPNLQTYNVLIKMSCKKKEFEKA 168

Query: 84  NVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACG 143
              +  +W                        +EG+  +VF  +                
Sbjct: 169 RGFLDWMW------------------------KEGFKPDVFSYST--------------- 189

Query: 144 HMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK---HGGCMRAY-QLLEE 199
            +I+ L ++G+   A  +   M +RG+ P +  YN ++ G  K   H   M  + +LLE+
Sbjct: 190 -VINDLAKAGKLDDALELFDEMSERGVAPDVTCYNILIDGFLKEKDHKTAMELWDRLLED 248

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
              +   P+  T+ +++ GL     ++   K+ + M   +        +  +  LC   N
Sbjct: 249 SSVY---PNVKTHNIMISGLSKCGRVDDCLKIWERMKQNEREKDLYTYSSLIHGLCDAGN 305

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
             +  +V   + + +   DV+T NT++ GFC+ G+I+E+L++   M      + + V++ 
Sbjct: 306 VDKAESVFNELDERKASIDVVTYNTMLGGFCRCGKIKESLELWRIMEHKN--SVNIVSYN 363

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
            +I GLL  G+I EA  +++++MP +GY+    TY   + GL     V +A  V   +  
Sbjct: 364 ILIKGLLENGKIDEA-TMIWRLMPAKGYAADKTTYGIFIHGLCVNGYVNKALGVMQEVES 422

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
            G   D   YA +ID LC+  +L+EA     ++       +++V  A+I GL R  ++ E
Sbjct: 423 SGGHLDVYAYASIIDCLCKKKRLEEASNLVKEMSKHGVELNSHVCNALIGGLIRDSRLGE 482

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           A  FL E+  +G  P +V YN++I G CK     EA   ++EM +NG  PD  T+ IL
Sbjct: 483 ASFFLREMGKNGCRPTVVSYNILICGLCKAGKFGEASAFVKEMLENGWKPDLKTYSIL 540



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 107/444 (24%), Positives = 197/444 (44%), Gaps = 44/444 (9%)

Query: 60  VLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGY 119
           V P SL+     + VL+    E+     F L++        + +   + +++  L     
Sbjct: 3   VFPKSLS----PKHVLKLLKSEKNPRAAFALFDSATRHPGYAHSAVVYHHILRRLSETRM 58

Query: 120 VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRK-RGLTPSLVSYN 178
           VN V RI E +   +   +E     +I +  ++     A  V   MR+  G  P++ SYN
Sbjct: 59  VNHVSRIVELIRSQECKCDEDVALSVIKTYGKNSMPDQALDVFKRMREIFGCEPAIRSYN 118

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
           ++++   +    ++   L       G  P+  TY VL++  C + + EKAR  L +M   
Sbjct: 119 TLLNAFVEAKQWVKVESLFAYFETAGVAPNLQTYNVLIKMSCKKKEFEKARGFLDWMW-- 176

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
                                            +   +PDV + +TVIN   K G++++A
Sbjct: 177 ---------------------------------KEGFKPDVFSYSTVINDLAKAGKLDDA 203

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
           L++ ++M + +  APD   +  +I G L     + A+ L  +++      P + T+N ++
Sbjct: 204 LELFDEM-SERGVAPDVTCYNILIDGFLKEKDHKTAMELWDRLLEDSSVYPNVKTHNIMI 262

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
            GL +  RV++  +++  M       D  TY+ +I GLC++  +D+A+  ++++      
Sbjct: 263 SGLSKCGRVDDCLKIWERMKQNEREKDLYTYSSLIHGLCDAGNVDKAESVFNELDERKAS 322

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI 478
            D   Y  M+ G CR GKI E++  L+ +++   + NIV YN++I G  +     EA  I
Sbjct: 323 IDVVTYNTMLGGFCRCGKIKESLE-LWRIMEHKNSVNIVSYNILIKGLLENGKIDEATMI 381

Query: 479 LREMRKNGLNPDAVTWRILDKLHG 502
            R M   G   D  T+ I   +HG
Sbjct: 382 WRLMPAKGYAADKTTYGIF--IHG 403



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 61/215 (28%), Positives = 103/215 (47%), Gaps = 11/215 (5%)

Query: 8   SRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTY 67
           SR+GEA     +M   G  P VVSY  LI G C+ G+   A     EM   G  P+  TY
Sbjct: 478 SRLGEASFFLREMGKNGCRPTVVSYNILICGLCKAGKFGEASAFVKEMLENGWKPDLKTY 537

Query: 68  SVLVRGVLRTRDVERANVLMFKLWERMKE---EEDLSVNNAAFANLVDSLCREGYVNEVF 124
           S+L+ G+ R R ++    L  +LW +  +   E D+ ++N     L+  LC  G +++  
Sbjct: 538 SILLCGLCRDRKID----LALELWHQFLQSGLETDVMMHNI----LIHGLCSVGKLDDAM 589

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
            +  +M              +++   + G ++ A+ +   M K GL P ++SYN+I+ GL
Sbjct: 590 TVMANMEHRNCTANLVTYNTLMEGFFKVGDSNRATVIWGYMYKMGLQPDIISYNTIMKGL 649

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGL 219
           C   G   A +  ++    G  P+ +T+ +LV  +
Sbjct: 650 CMCRGVSYAMEFFDDARNHGIFPTVYTWNILVRAV 684



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 59/130 (45%), Gaps = 7/130 (5%)

Query: 4   LCGLSR---VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           LCGL R   +  A +L+      G   +V+ +  LIHG C  G++D A  V   M H   
Sbjct: 541 LCGLCRDRKIDLALELWHQFLQSGLETDVMMHNILIHGLCSVGKLDDAMTVMANMEHRNC 600

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCRE-GY 119
             N +TY+ L+ G  +  D  RA V+   ++ +M  + D+   N     L   +CR   Y
Sbjct: 601 TANLVTYNTLMEGFFKVGDSNRATVIWGYMY-KMGLQPDIISYNTIMKGLC--MCRGVSY 657

Query: 120 VNEVFRIAED 129
             E F  A +
Sbjct: 658 AMEFFDDARN 667



 Score = 47.0 bits (110), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 43/73 (58%), Gaps = 3/73 (4%)

Query: 6   GLSRVGEAHK---LFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           G  +VG++++   ++  M   G  P+++SY T++ G C    +  A + FD+ R+ G+ P
Sbjct: 613 GFFKVGDSNRATVIWGYMYKMGLQPDIISYNTIMKGLCMCRGVSYAMEFFDDARNHGIFP 672

Query: 63  NSLTYSVLVRGVL 75
              T+++LVR V+
Sbjct: 673 TVYTWNILVRAVV 685


>gi|413922833|gb|AFW62765.1| hypothetical protein ZEAMMB73_408366 [Zea mays]
          Length = 820

 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 133/516 (25%), Positives = 232/516 (44%), Gaps = 29/516 (5%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C   +  EA K+  +M   G +P VV+ T +++ YCR G M  A +VF+ MR  G 
Sbjct: 272 VDLWCREQKAEEAEKILNEMFDSGLMPCVVTCTIVVNAYCREGRMSGAVRVFESMRFKGC 331

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKE---EEDLSVNNAAFANLVDSLCRE 117
            PN  TY+ +V+G      V +A  L+    ++M+E   E D+   N     L+   C +
Sbjct: 332 EPNVWTYNAIVQGFCNAGKVYKAMALL----DQMRECGVEPDVVTYNL----LIRGQCID 383

Query: 118 GYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
           G++   FR+   M       +++    +ID+LC++G+   A  +   +  RG+ P+ V++
Sbjct: 384 GHIGSAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTF 443

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
           N++++GLCK G    A   LE  I  GY P  +TY   +E LC     ++    +  ML 
Sbjct: 444 NTVINGLCKAGKFDVACTFLENMISAGYAPDTYTYSPFIENLCKTKGSQEGLFFIDEMLQ 503

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
           K     T    I +  L   +N      +   M+   C PDV+T  T +  +C  GR++E
Sbjct: 504 KDVKPSTVNYTIVINRLFNERNYGLATRIWGQMVSQGCSPDVVTYTTSVRAYCNEGRLDE 563

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTY--- 354
           A  V+ +M   +    DA+ + T+I G  ++G+   A+ +L   M      P   T+   
Sbjct: 564 AENVVTEMKKCRTIV-DAMAYNTLIDGHTSIGQTDRAVTILKH-MTGVASMPNHFTFFIL 621

Query: 355 -----------NAVLRGLFRLRRVEEAK--EVFNCMLGIGVVADSTTYAIVIDGLCESNQ 401
                      +  L+     + +E A   E+F  M    V + + TY  +++G  E  +
Sbjct: 622 LRHLLQRRLAEHVPLKATSVWKTIELADVFELFELMKKNSVPSSARTYLSILEGFSEERR 681

Query: 402 LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNV 461
           LDE       +   +   +  +Y A++   C+     +A   L  ++  G  PN++ Y  
Sbjct: 682 LDEVTSLVSLMKEENLPLNEDIYNALVNCFCKLRMYSDAWALLCSMIGHGFLPNLIFYQY 741

Query: 462 VIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           ++ G         A +I R  R    N D + W+++
Sbjct: 742 LLSGLTAEGQADRAKEIFRSSRWKEYNTDEIVWKVI 777



 Score =  181 bits (459), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 129/478 (26%), Positives = 211/478 (44%), Gaps = 28/478 (5%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC  + +  A +    M   G  P+  ++ +LI GYCRT +++VA+ +F +M   G   +
Sbjct: 139 LCRRADLRHAQRYLSLMVRSGWRPDAFTFNSLILGYCRTQQLEVAHDLFCKMPFRGFSQD 198

Query: 64  SLTYSVLVRGVLRTRDVERA---------------NVLMFKLWERMKEEEDLSV------ 102
           +++Y+ L+ G      ++ A                 L+  L +  + EE L +      
Sbjct: 199 AVSYAALIEGFCEAGRIDEALELFREMTQPDMYTHAALVKGLCDAGRGEEGLCMLQKMKE 258

Query: 103 -----NNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHG 157
                   A+A LVD  CRE    E  +I  +M     +     C  ++++ CR GR  G
Sbjct: 259 LGWRPTTRAYAALVDLWCREQKAEEAEKILNEMFDSGLMPCVVTCTIVVNAYCREGRMSG 318

Query: 158 ASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVE 217
           A RV   MR +G  P++ +YN+IV G C  G   +A  LL++  + G  P   TY +L+ 
Sbjct: 319 AVRVFESMRFKGCEPNVWTYNAIVQGFCNAGKVYKAMALLDQMRECGVEPDVVTYNLLIR 378

Query: 218 GLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQP 277
           G C +  +  A ++L+ M            N+ + ALC      E  ++   +     +P
Sbjct: 379 GQCIDGHIGSAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRP 438

Query: 278 DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNL 337
           + +T NTVING CK G+ + A   L +M++  + APD  T++  I  L      QE L  
Sbjct: 439 NSVTFNTVINGLCKAGKFDVACTFLENMISAGY-APDTYTYSPFIENLCKTKGSQEGLFF 497

Query: 338 LYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLC 397
           + +++ Q+   P  V Y  V+  LF  R    A  ++  M+  G   D  TY   +   C
Sbjct: 498 IDEML-QKDVKPSTVNYTIVINRLFNERNYGLATRIWGQMVSQGCSPDVVTYTTSVRAYC 556

Query: 398 ESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN 455
              +LDEA+    ++     I D   Y  +I G    G+   AV  L  +      PN
Sbjct: 557 NEGRLDEAENVVTEMKKCRTIVDAMAYNTLIDGHTSIGQTDRAVTILKHMTGVASMPN 614



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 126/494 (25%), Positives = 220/494 (44%), Gaps = 51/494 (10%)

Query: 15  KLFFDM-KSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRG 73
           +LF  M +     P   +Y  LI   CR  ++  A +    M   G  P++ T++ L+ G
Sbjct: 114 RLFAHMYRHAPPAPTGATYNALIRALCRRADLRHAQRYLSLMVRSGWRPDAFTFNSLILG 173

Query: 74  VLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQG 133
             RT+ +E A+ L  K+  R       S +  ++A L++  C  G ++E   +  +M Q 
Sbjct: 174 YCRTQQLEVAHDLFCKMPFR-----GFSQDAVSYAALIEGFCEAGRIDEALELFREMTQ- 227

Query: 134 KSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRA 193
                                                 P + ++ ++V GLC  G     
Sbjct: 228 --------------------------------------PDMYTHAALVKGLCDAGRGEEG 249

Query: 194 YQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRA 253
             +L++  + G+ P+   Y  LV+  C E   E+A K+L  M     +     C I + A
Sbjct: 250 LCMLQKMKELGWRPTTRAYAALVDLWCREQKAEEAEKILNEMFDSGLMPCVVTCTIVVNA 309

Query: 254 LCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCA- 312
            C     +  + V   M    C+P+V T N ++ GFC  G++ +A+ +L+ M   + C  
Sbjct: 310 YCREGRMSGAVRVFESMRFKGCEPNVWTYNAIVQGFCNAGKVYKAMALLDQM---RECGV 366

Query: 313 -PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK 371
            PD VT+  +I G    G I  A  LL ++M   G +    TYN ++  L +  +V+EA 
Sbjct: 367 EPDVVTYNLLIRGQCIDGHIGSAFRLL-RLMEGNGLAADQYTYNVLIDALCKTGKVDEAC 425

Query: 372 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 431
            +F+ +   G+  +S T+  VI+GLC++ + D A  F ++++      D Y Y+  I+ L
Sbjct: 426 SLFDGLEYRGIRPNSVTFNTVINGLCKAGKFDVACTFLENMISAGYAPDTYTYSPFIENL 485

Query: 432 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 491
           C++    E + F+ E++   V P+ V Y +VI+          A +I  +M   G +PD 
Sbjct: 486 CKTKGSQEGLFFIDEMLQKDVKPSTVNYTIVINRLFNERNYGLATRIWGQMVSQGCSPDV 545

Query: 492 VTWRILDKLHGNRG 505
           VT+    + + N G
Sbjct: 546 VTYTTSVRAYCNEG 559



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 119/428 (27%), Positives = 197/428 (46%), Gaps = 7/428 (1%)

Query: 86  LMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHM 145
           LM +L+  M      +   A +  L+ +LCR   +    R    M +     + F    +
Sbjct: 111 LMLRLFAHMYRHAPPAPTGATYNALIRALCRRADLRHAQRYLSLMVRSGWRPDAFTFNSL 170

Query: 146 IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY 205
           I   CR+ +   A  +   M  RG +   VSY +++ G C+ G    A +L  E  Q   
Sbjct: 171 ILGYCRTQQLEVAHDLFCKMPFRGFSQDAVSYAALIEGFCEAGRIDEALELFREMTQ--- 227

Query: 206 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 265
            P  +T+  LV+GLC     E+   +LQ M        TR     +   C  +   E   
Sbjct: 228 -PDMYTHAALVKGLCDAGRGEEGLCMLQKMKELGWRPTTRAYAALVDLWCREQKAEEAEK 286

Query: 266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 325
           +L  M  +   P V+T   V+N +C+ GR+  A++V   M   K C P+  T+  I+ G 
Sbjct: 287 ILNEMFDSGLMPCVVTCTIVVNAYCREGRMSGAVRVFESM-RFKGCEPNVWTYNAIVQGF 345

Query: 326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 385
            N G++ +A+ LL Q M + G  P +VTYN ++RG      +  A  +   M G G+ AD
Sbjct: 346 CNAGKVYKAMALLDQ-MRECGVEPDVVTYNLLIRGQCIDGHIGSAFRLLRLMEGNGLAAD 404

Query: 386 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY 445
             TY ++ID LC++ ++DEA   +D + +     ++  +  +I GLC++GK   A  FL 
Sbjct: 405 QYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLCKAGKFDVACTFLE 464

Query: 446 ELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRI-LDKLHGNR 504
            ++ +G  P+   Y+  I+  CK    +E    + EM +  + P  V + I +++L   R
Sbjct: 465 NMISAGYAPDTYTYSPFIENLCKTKGSQEGLFFIDEMLQKDVKPSTVNYTIVINRLFNER 524

Query: 505 GNDFGLRI 512
                 RI
Sbjct: 525 NYGLATRI 532



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 56/266 (21%), Positives = 103/266 (38%), Gaps = 56/266 (21%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C   R+ EA  +  +MK    + + ++Y TLI G+   G+ D A  +   M     +PN 
Sbjct: 556 CNEGRLDEAENVVTEMKKCRTIVDAMAYNTLIDGHTSIGQTDRAVTILKHMTGVASMPNH 615

Query: 65  LTY--------------SVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAA--FA 108
            T+               V ++     + +E A+V  F+L+E MK+    SV ++A  + 
Sbjct: 616 FTFFILLRHLLQRRLAEHVPLKATSVWKTIELADV--FELFELMKKN---SVPSSARTYL 670

Query: 109 NLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKR 168
           ++++    E  ++EV  +   M +      E     +++  C+      A  ++  M   
Sbjct: 671 SILEGFSEERRLDEVTSLVSLMKEENLPLNEDIYNALVNCFCKLRMYSDAWALLCSMIGH 730

Query: 169 GLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEG--------------IQFGYL-------- 206
           G  P+L+ Y  ++ GL   G   RA ++                  I  G++        
Sbjct: 731 GFLPNLIFYQYLLSGLTAEGQADRAKEIFRSSRWKEYNTDEIVWKVIIDGFIRKGHADMC 790

Query: 207 -------------PSEHTYKVLVEGL 219
                        PS+ TY +L E L
Sbjct: 791 HDMISMLEQMKCKPSDETYAMLTEEL 816


>gi|224126843|ref|XP_002319940.1| predicted protein [Populus trichocarpa]
 gi|222858316|gb|EEE95863.1| predicted protein [Populus trichocarpa]
          Length = 555

 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 108/391 (27%), Positives = 201/391 (51%), Gaps = 2/391 (0%)

Query: 107 FANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMR 166
           F  L  +L R  +   V  +++ M      ++  +   +I+  CR         V+  + 
Sbjct: 94  FGELFSALVRMKHYKTVVSLSKQMEMAGISHDVLSLTILINCFCRLCHVDYGFSVLGKII 153

Query: 167 KRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLE 226
           K GL P++++++++++G C  G   RA +L +  +  GY P+ H+Y ++++GLC      
Sbjct: 154 KLGLEPNVITFSTLINGFCIEGKIGRAIELFDVMVARGYKPNVHSYSIIIKGLCRVGKTT 213

Query: 227 KARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVI 286
           +  K+L+ M          I N  +  LC  +   E +++   M  T   P V+T  ++I
Sbjct: 214 EVIKLLEHMKVVGCEPDVVIYNTIVDRLCKDRLVNEAVHIFCKMKGTGILPTVVTYTSLI 273

Query: 287 NGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
           +G   +GR +EA  +LN+M  G    PD V F+ +I  +   G + EA  ++ + M + G
Sbjct: 274 HGLRNLGRWKEAFGLLNEMKGGNI-MPDLVAFSVLIDIMCKEGEVSEA-RVILKTMTEMG 331

Query: 347 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
             P + TYN ++ G      V EA++VF  M+  G + D  +++I+++G C++ ++DEAK
Sbjct: 332 VEPDVATYNTLMNGYCLRMEVVEARKVFEVMISKGRMPDVFSFSILVNGYCKAKRIDEAK 391

Query: 407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466
           + +D++     I D   Y  +I GLC++ +  EA     ++  +G  PN+V Y++++D  
Sbjct: 392 QLFDEMTHRGLIPDTVSYNTLISGLCQARRPLEAEELFKDMHSNGYPPNLVTYSILLDCL 451

Query: 467 CKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            K     +A  + R M  +GL PD VT+ I+
Sbjct: 452 SKQGYLDQAMGLFRAMENSGLKPDLVTYNIM 482



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 134/470 (28%), Positives = 219/470 (46%), Gaps = 42/470 (8%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M+  G   +V+S T LI+ +CR   +D  + V  ++   G+ PN +T+S L+ G      
Sbjct: 117 MEMAGISHDVLSLTILINCFCRLCHVDYGFSVLGKIIKLGLEPNVITFSTLINGFCIEGK 176

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
           + RA     +L++ M        N  +++ ++  LCR G   EV ++ E M       + 
Sbjct: 177 IGRA----IELFDVM-VARGYKPNVHSYSIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDV 231

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
                ++D LC+    + A  +   M+  G+ P++V+Y S++HGL   G    A+ LL E
Sbjct: 232 VIYNTIVDRLCKDRLVNEAVHIFCKMKGTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNE 291

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
                 +P    + VL++ +C E ++ +AR +L+ M                        
Sbjct: 292 MKGGNIMPDLVAFSVLIDIMCKEGEVSEARVILKTM------------------------ 327

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
            TE+            +PDV T NT++NG+C    + EA KV   M++ K   PD  +F+
Sbjct: 328 -TEM----------GVEPDVATYNTLMNGYCLRMEVVEARKVFEVMIS-KGRMPDVFSFS 375

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
            ++ G     RI EA   L+  M  RG  P  V+YN ++ GL + RR  EA+E+F  M  
Sbjct: 376 ILVNGYCKAKRIDEA-KQLFDEMTHRGLIPDTVSYNTLISGLCQARRPLEAEELFKDMHS 434

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
            G   +  TY+I++D L +   LD+A   +  +       D   Y  MI G+C+ GK  +
Sbjct: 435 NGYPPNLVTYSILLDCLSKQGYLDQAMGLFRAMENSGLKPDLVTYNIMIDGMCKYGKFKD 494

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNP 489
           A     EL   G+ PN       IDG CK  +  EA++  R+M K+  +P
Sbjct: 495 ARELFAELSVKGLQPNNWVCTPTIDGVCKGGLLDEAHKAFRQMEKDDCSP 544



 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 128/458 (27%), Positives = 215/458 (46%), Gaps = 55/458 (12%)

Query: 6   GLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSL 65
           G S +G+  KL       G  PNV++++TLI+G+C  G++  A ++FD M   G  PN  
Sbjct: 145 GFSVLGKIIKL-------GLEPNVITFSTLINGFCIEGKIGRAIELFDVMVARGYKPNVH 197

Query: 66  TYSVLVRGVLRTRDVERANVLMFKLWERMKE---EEDLSVNNAAFANLVDSLCREGYVNE 122
           +YS++++G+ R          + KL E MK    E D+ + N     +VD LC++  VNE
Sbjct: 198 SYSIIIKGLCRVGKTTE----VIKLLEHMKVVGCEPDVVIYNT----IVDRLCKDRLVNE 249

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
              I                       C+             M+  G+ P++V+Y S++H
Sbjct: 250 AVHI----------------------FCK-------------MKGTGILPTVVTYTSLIH 274

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           GL   G    A+ LL E      +P    + VL++ +C E ++ +AR +L+ M       
Sbjct: 275 GLRNLGRWKEAFGLLNEMKGGNIMPDLVAFSVLIDIMCKEGEVSEARVILKTMTEMGVEP 334

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
                N  +   CL     E   V   M+     PDV + + ++NG+CK  RI+EA ++ 
Sbjct: 335 DVATYNTLMNGYCLRMEVVEARKVFEVMISKGRMPDVFSFSILVNGYCKAKRIDEAKQLF 394

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
           ++M   +   PD V++ T+I GL    R  EA   L++ M   GY P +VTY+ +L  L 
Sbjct: 395 DEMTH-RGLIPDTVSYNTLISGLCQARRPLEA-EELFKDMHSNGYPPNLVTYSILLDCLS 452

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
           +   +++A  +F  M   G+  D  TY I+IDG+C+  +  +A+  + ++       +N+
Sbjct: 453 KQGYLDQAMGLFRAMENSGLKPDLVTYNIMIDGMCKYGKFKDARELFAELSVKGLQPNNW 512

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYN 460
           V    I G+C+ G + EA     ++     +P   C N
Sbjct: 513 VCTPTIDGVCKGGLLDEAHKAFRQMEKDDCSPAQGCIN 550



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 90/377 (23%), Positives = 177/377 (46%), Gaps = 7/377 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C   ++G A +LF  M +RG+ PNV SY+ +I G CR G+     K+ + M+  G 
Sbjct: 168 INGFCIEGKIGRAIELFDVMVARGYKPNVHSYSIIIKGLCRVGKTTEVIKLLEHMKVVGC 227

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ + Y+ +V  + + R V  A      ++ +MK    L      + +L+  L   G  
Sbjct: 228 EPDVVIYNTIVDRLCKDRLVNEA----VHIFCKMKGTGILP-TVVTYTSLIHGLRNLGRW 282

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E F +  +M  G  + +  A   +ID +C+ G    A  ++  M + G+ P + +YN++
Sbjct: 283 KEAFGLLNEMKGGNIMPDLVAFSVLIDIMCKEGEVSEARVILKTMTEMGVEPDVATYNTL 342

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++G C     + A ++ E  I  G +P   ++ +LV G C    +++A+++   M  +  
Sbjct: 343 MNGYCLRMEVVEARKVFEVMISKGRMPDVFSFSILVNGYCKAKRIDEAKQLFDEMTHRGL 402

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           +  T   N  +  LC  + P E   +   M      P+++T + +++   K G +++A+ 
Sbjct: 403 IPDTVSYNTLISGLCQARRPLEAEELFKDMHSNGYPPNLVTYSILLDCLSKQGYLDQAMG 462

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +   M       PD VT+  +I G+   G+ ++A  L  + +  +G  P        + G
Sbjct: 463 LFRAMENSGL-KPDLVTYNIMIDGMCKYGKFKDARELFAE-LSVKGLQPNNWVCTPTIDG 520

Query: 361 LFRLRRVEEAKEVFNCM 377
           + +   ++EA + F  M
Sbjct: 521 VCKGGLLDEAHKAFRQM 537



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 94/356 (26%), Positives = 163/356 (45%), Gaps = 11/356 (3%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC + +  E  KL   MK  G  P+VV Y T++   C+   ++ A  +F +M+  G+LP 
Sbjct: 206 LCRVGKTTEVIKLLEHMKVVGCEPDVVIYNTIVDRLCKDRLVNEAVHIFCKMKGTGILPT 265

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY+ L+ G+      + A    F L   MK   ++  +  AF+ L+D +C+EG V+E 
Sbjct: 266 VVTYTSLIHGLRNLGRWKEA----FGLLNEMK-GGNIMPDLVAFSVLIDIMCKEGEVSEA 320

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             I + M +     +      +++  C       A +V  VM  +G  P + S++ +V+G
Sbjct: 321 RVILKTMTEMGVEPDVATYNTLMNGYCLRMEVVEARKVFEVMISKGRMPDVFSFSILVNG 380

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK      A QL +E    G +P   +Y  L+ GLC      +A ++ + M S      
Sbjct: 381 YCKAKRIDEAKQLFDEMTHRGLIPDTVSYNTLISGLCQARRPLEAEELFKDMHSNGYPPN 440

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               +I L  L       + + +   M  +  +PD++T N +I+G CK G+ ++A ++  
Sbjct: 441 LVTYSILLDCLSKQGYLDQAMGLFRAMENSGLKPDLVTYNIMIDGMCKYGKFKDARELFA 500

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQV-----MPQRGYSPGIVTY 354
           ++ + K   P+    T  I G+   G + EA     Q+      P +G   G  TY
Sbjct: 501 EL-SVKGLQPNNWVCTPTIDGVCKGGLLDEAHKAFRQMEKDDCSPAQGCINGRATY 555


>gi|115482788|ref|NP_001064987.1| Os10g0501700 [Oryza sativa Japonica Group]
 gi|22165069|gb|AAM93686.1| putative leaf protein [Oryza sativa Japonica Group]
 gi|31432904|gb|AAP54480.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
 gi|113639596|dbj|BAF26901.1| Os10g0501700 [Oryza sativa Japonica Group]
 gi|125575306|gb|EAZ16590.1| hypothetical protein OsJ_32064 [Oryza sativa Japonica Group]
          Length = 454

 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 121/471 (25%), Positives = 226/471 (47%), Gaps = 46/471 (9%)

Query: 27  PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVL 86
           P+VVSY T+I G  + G++D AY  + EM    V P+++TY+ ++  + + + ++RA   
Sbjct: 9   PDVVSYNTIIDGLFKEGDVDKAYITYHEMLDRRVSPDAVTYNSIIAALSKAQAMDRAM-- 66

Query: 87  MFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMI 146
                                              EV  +   MP        F    ++
Sbjct: 67  -----------------------------------EVLTVMV-MPNC------FTYNSIM 84

Query: 147 DSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL 206
              C SG++  A  +   M   G+ P +V+YNS++  LCK+G C  A ++ +  ++ G  
Sbjct: 85  HGYCSSGQSEKAIGIFRKMCSDGIEPDVVTYNSLMDYLCKNGKCTEARKIFDSMVKRGLK 144

Query: 207 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 266
           P   TY  L+ G   +  L +   +L  M+         + NI + A    +   E++ V
Sbjct: 145 PDITTYGTLLHGYASKGALVEMHDLLALMVQNGMQLDHHVFNILICAYTKQEKVDEVVLV 204

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
              M Q    P+ +   TVI+G CK+GR+++A+     M+  K   P+ V +T++I  L 
Sbjct: 205 FSKMRQQGLTPNAVNYRTVIDGLCKLGRLDDAMLNFEQMI-DKGLTPNVVVYTSLIHALC 263

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
              + ++A  L+++++ Q G +P IV +N +L  L +  RV E+K++F+ +  IGV  D 
Sbjct: 264 TYDKWEKAEELIFEILDQ-GINPNIVFFNTILDSLCKEGRVIESKKLFDLLGHIGVNPDV 322

Query: 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE 446
            TY+ +IDG C + ++D A +    +V      D+  Y+ +I G C+  ++ +A+    E
Sbjct: 323 ITYSTLIDGYCLAGKMDGAMKLLTGMVSVGLKPDSVTYSTLINGYCKINRMEDALALFKE 382

Query: 447 LVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           +  +GV P+I+ YN+++ G  +      A ++   + ++G   +  T+ I+
Sbjct: 383 MESNGVNPDIITYNIILHGLFRTRRTAAAKELYARITESGTQLELSTYNII 433



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 112/382 (29%), Positives = 195/382 (51%), Gaps = 17/382 (4%)

Query: 26  VPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANV 85
           +PN  +Y +++HGYC +G+ + A  +F +M   G+ P+ +TY+ L+  + +      A  
Sbjct: 74  MPNCFTYNSIMHGYCSSGQSEKAIGIFRKMCSDGIEPDVVTYNSLMDYLCKNGKCTEAR- 132

Query: 86  LMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQ-GKSVNEEFACGH 144
              K+++ M +   L  +   +  L+     +G + E+  +   M Q G  ++      H
Sbjct: 133 ---KIFDSMVKR-GLKPDITTYGTLLHGYASKGALVEMHDLLALMVQNGMQLDH-----H 183

Query: 145 MIDSL-CRSGRNHGASRVVYV---MRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEG 200
           + + L C   +      VV V   MR++GLTP+ V+Y +++ GLCK G    A    E+ 
Sbjct: 184 VFNILICAYTKQEKVDEVVLVFSKMRQQGLTPNAVNYRTVIDGLCKLGRLDDAMLNFEQM 243

Query: 201 IQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNP 260
           I  G  P+   Y  L+  LC     EKA +++  +L +         N  L +LC     
Sbjct: 244 IDKGLTPNVVVYTSLIHALCTYDKWEKAEELIFEILDQGINPNIVFFNTILDSLCKEGRV 303

Query: 261 TELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTT 320
            E   +   +      PDVIT +T+I+G+C  G+++ A+K+L  MV+     PD+VT++T
Sbjct: 304 IESKKLFDLLGHIGVNPDVITYSTLIDGYCLAGKMDGAMKLLTGMVSVGL-KPDSVTYST 362

Query: 321 IIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI 380
           +I G   + R+++AL  L++ M   G +P I+TYN +L GLFR RR   AKE++  +   
Sbjct: 363 LINGYCKINRMEDAL-ALFKEMESNGVNPDIITYNIILHGLFRTRRTAAAKELYARITES 421

Query: 381 GVVADSTTYAIVIDGLCESNQL 402
           G   + +TY I++    ++N L
Sbjct: 422 GTQLELSTYNIILMDFAKTNSL 443



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/358 (25%), Positives = 162/358 (45%), Gaps = 42/358 (11%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           MD LC   +  EA K+F  M  RG  P++ +Y TL+HGY   G +   + +   M   G+
Sbjct: 119 MDYLCKNGKCTEARKIFDSMVKRGLKPDITTYGTLLHGYASKGALVEMHDLLALMVQNGM 178

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             +   +++L+    +   V+   VL+F    +M+ ++ L+ N   +  ++D LC+ G +
Sbjct: 179 QLDHHVFNILICAYTKQEKVDEV-VLVF---SKMR-QQGLTPNAVNYRTVIDGLCKLGRL 233

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           ++     E M              +I +LC   +   A  +++ +  +G+ P++V +N+I
Sbjct: 234 DDAMLNFEQMIDKGLTPNVVVYTSLIHALCTYDKWEKAEELIFEILDQGINPNIVFFNTI 293

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +  LCK G  + + +L +     G  P   TY  L++G C    ++ A K+L  M+S   
Sbjct: 294 LDSLCKEGRVIESKKLFDLLGHIGVNPDVITYSTLIDGYCLAGKMDGAMKLLTGMVS--- 350

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                              +PD +T +T+ING+CK+ R+E+AL 
Sbjct: 351 --------------------------------VGLKPDSVTYSTLINGYCKINRMEDALA 378

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
           +  +M +     PD +T+  I+ GL    R   A   LY  + + G    + TYN +L
Sbjct: 379 LFKEMESNG-VNPDIITYNIILHGLFRTRRTAAAKE-LYARITESGTQLELSTYNIIL 434



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 71/254 (27%), Positives = 117/254 (46%), Gaps = 31/254 (12%)

Query: 274 QCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQE 333
           +C PDV++ NT+I+G  K G +++A    ++M+  +  +PDAVT+ +II  L     +  
Sbjct: 6   RCPPDVVSYNTIIDGLFKEGDVDKAYITYHEMLDRR-VSPDAVTYNSIIAALSKAQAMDR 64

Query: 334 ALNLL-YQVMP-----------------------------QRGYSPGIVTYNAVLRGLFR 363
           A+ +L   VMP                               G  P +VTYN+++  L +
Sbjct: 65  AMEVLTVMVMPNCFTYNSIMHGYCSSGQSEKAIGIFRKMCSDGIEPDVVTYNSLMDYLCK 124

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
             +  EA+++F+ M+  G+  D TTY  ++ G      L E       +V      D++V
Sbjct: 125 NGKCTEARKIFDSMVKRGLKPDITTYGTLLHGYASKGALVEMHDLLALMVQNGMQLDHHV 184

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           +  +I    +  K+ E V    ++   G+TPN V Y  VIDG CKL    +A     +M 
Sbjct: 185 FNILICAYTKQEKVDEVVLVFSKMRQQGLTPNAVNYRTVIDGLCKLGRLDDAMLNFEQMI 244

Query: 484 KNGLNPDAVTWRIL 497
             GL P+ V +  L
Sbjct: 245 DKGLTPNVVVYTSL 258



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 81/154 (52%), Gaps = 6/154 (3%)

Query: 349 PGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRF 408
           P +V+YN ++ GLF+   V++A   ++ ML   V  D+ TY  +I  L ++  +D A   
Sbjct: 9   PDVVSYNTIIDGLFKEGDVDKAYITYHEMLDRRVSPDAVTYNSIIAALSKAQAMDRAMEV 68

Query: 409 WDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACK 468
              +V P    + + Y +++ G C SG+  +A+    ++   G+ P++V YN ++D  CK
Sbjct: 69  LTVMVMP----NCFTYNSIMHGYCSSGQSEKAIGIFRKMCSDGIEPDVVTYNSLMDYLCK 124

Query: 469 LSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
                EA +I   M K GL PD  T+  L  LHG
Sbjct: 125 NGKCTEARKIFDSMVKRGLKPDITTYGTL--LHG 156



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 92/198 (46%), Gaps = 13/198 (6%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   +  +A +L F++  +G  PN+V + T++   C+ G +  + K+FD + H GV P+
Sbjct: 262 LCTYDKWEKAEELIFEILDQGINPNIVFFNTILDSLCKEGRVIESKKLFDLLGHIGVNPD 321

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TYS L+ G      ++ A  L+  +         L  ++  ++ L++  C+   + + 
Sbjct: 322 VITYSTLIDGYCLAGKMDGAMKLLTGMVSV-----GLKPDSVTYSTLINGYCKINRMEDA 376

Query: 124 FRIAEDMPQGKSVNEEFACGHMI-DSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
             + ++M +   VN +    ++I   L R+ R   A  +   + + G    L +YN I+ 
Sbjct: 377 LALFKEM-ESNGVNPDIITYNIILHGLFRTRRTAAAKELYARITESGTQLELSTYNIILM 435

Query: 183 GLCK------HGGCMRAY 194
              K      H GC R Y
Sbjct: 436 DFAKTNSLMMHFGCFRTY 453


>gi|37572999|dbj|BAC98691.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|222640519|gb|EEE68651.1| hypothetical protein OsJ_27230 [Oryza sativa Japonica Group]
          Length = 691

 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 121/488 (24%), Positives = 235/488 (48%), Gaps = 19/488 (3%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           R G+A ++F +M  R  +PN ++Y T+I G+ + G+++  +++ D+M   G+ PN++TY+
Sbjct: 215 RGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYN 274

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
           VL+ G+ R   +   + L+ ++       + +  +   ++ L D L R G    +  +  
Sbjct: 275 VLLSGLCRAGRMGETSALLDEM-----ASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFG 329

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
              +      ++ C  +++ LC+ G+   A  V+  +   GL P+ V YN++++G C+ G
Sbjct: 330 KYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTG 389

Query: 189 GCMRAYQLLEEGIQFGYLPSEH------TYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
               A+        FG + S H      TY  L+ GLC    +  A+ +L  M       
Sbjct: 390 ELEGAFS------TFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNP 443

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
                N  + A        +   VL  M +   +P+V++  +++N FCK G+I EA+ +L
Sbjct: 444 TVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAIL 503

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
           +DM   K   P+A  +  II   +  G   +A  +L + M   G SP IVTYN +++GL 
Sbjct: 504 DDMFH-KDVLPNAQVYNAIIDAYVEHGPNDQAF-ILVEKMKSNGISPSIVTYNLLIKGLC 561

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
              ++ EA+E+ N +    ++ D+ +Y  +I   C    +D+A      +          
Sbjct: 562 NQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVR 621

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
            Y  +I GL  +G+++E  +   +++ + V P+   +N++++   K   + +A  + +EM
Sbjct: 622 TYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRKEM 681

Query: 483 RKNGLNPD 490
            +   N D
Sbjct: 682 LQKRNNHD 689



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 129/500 (25%), Positives = 222/500 (44%), Gaps = 8/500 (1%)

Query: 10  VGEAHKLFFDMKSRGHVP-NVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           +GEA  +   M   G  P N  SY  +I G  R G    A +VFDEM    VLPN +TY+
Sbjct: 180 LGEAVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYN 239

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
            ++ G ++  D+E      F+L ++M     L  N   +  L+  LCR G + E   + +
Sbjct: 240 TMIDGHIKGGDLEAG----FRLRDQMVCH-GLKPNAITYNVLLSGLCRAGRMGETSALLD 294

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
           +M   K V + F    + D L R+G +     +     K G+T    + + +++GLCK G
Sbjct: 295 EMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDG 354

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
               A ++L+  +  G +P+   Y  L+ G C   +LE A      M S+         N
Sbjct: 355 KVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYN 414

Query: 249 IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 308
             +  LC  +  T   ++L+ M      P V T NT+I+ + + G++E+   VL++M   
Sbjct: 415 ALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQEN 474

Query: 309 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE 368
               P+ V++ +I+      G+I EA+ +L   M  +   P    YNA++         +
Sbjct: 475 GL-KPNVVSYGSIVNAFCKNGKIPEAVAILDD-MFHKDVLPNAQVYNAIIDAYVEHGPND 532

Query: 369 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI 428
           +A  +   M   G+     TY ++I GLC  +Q+ EA+   + +     I D   Y  +I
Sbjct: 533 QAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLI 592

Query: 429 KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLN 488
              C  G I +A+     +   G+   +  Y+ +I G        E   + ++M +N + 
Sbjct: 593 SACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVV 652

Query: 489 PDAVTWRILDKLHGNRGNDF 508
           P      I+ + +   GN+ 
Sbjct: 653 PSNAIHNIMVEAYSKYGNEI 672



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 119/496 (23%), Positives = 218/496 (43%), Gaps = 8/496 (1%)

Query: 13  AHKLFFDM--KSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVL 70
           A +L  D+  ++R  +P++ S   L+      G      + F  +   G  P++  ++  
Sbjct: 111 ALRLLSDLADEARAPLPSLSSCNLLLEALLSLGRHADVRRAFGILASAGARPDTFAWNKA 170

Query: 71  VRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDM 130
           V+  +   D+  A      +  RM  +     N  ++  ++  + R G   +   + ++M
Sbjct: 171 VQACVAAGDLGEA----VGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVEVFDEM 226

Query: 131 PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGC 190
            +   +        MID   + G      R+   M   GL P+ ++YN ++ GLC+ G  
Sbjct: 227 TERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRM 286

Query: 191 MRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIY 250
                LL+E      +P   TY +L +GL    D +    +    L          C+I 
Sbjct: 287 GETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSIL 346

Query: 251 LRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKF 310
           L  LC     +    VL  ++     P  +  NT+ING+C+ G +E A      M + + 
Sbjct: 347 LNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKS-RH 405

Query: 311 CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEA 370
             PD +T+  +I GL    RI  A +LL + M   G +P + T+N ++    R  ++E+ 
Sbjct: 406 IKPDHITYNALINGLCKAERITNAQDLLME-MQDNGVNPTVETFNTLIDAYGRTGQLEKC 464

Query: 371 KEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKG 430
             V + M   G+  +  +Y  +++  C++ ++ EA    DD+     + +  VY A+I  
Sbjct: 465 FIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDA 524

Query: 431 LCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD 490
               G   +A   + ++  +G++P+IV YN++I G C  S   EA +I+  +  + L PD
Sbjct: 525 YVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPD 584

Query: 491 AVTWRILDKLHGNRGN 506
           AV++  L      RGN
Sbjct: 585 AVSYNTLISACCYRGN 600



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 93/381 (24%), Positives = 179/381 (46%), Gaps = 48/381 (12%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   +V  A ++   + + G VP  V Y TLI+GYC+TGE++ A+  F +M+   +
Sbjct: 347 LNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHI 406

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNA--AFANLVDSLCREG 118
            P+ +TY+ L+ G+ +   +  A  L+ ++       +D  VN     F  L+D+  R G
Sbjct: 407 KPDHITYNALINGLCKAERITNAQDLLMEM-------QDNGVNPTVETFNTLIDAYGRTG 459

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
            + + F +  +M +        + G ++++ C++G+   A  ++  M  + + P+   YN
Sbjct: 460 QLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYN 519

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
           +I+    +HG   +A+ L+E+    G  PS  TY +L++GLC +S + +A +++  + + 
Sbjct: 520 AIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNH 579

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
           + +                                   PD ++ NT+I+  C  G I++A
Sbjct: 580 RLI-----------------------------------PDAVSYNTLISACCYRGNIDKA 604

Query: 299 LKVLNDMVAGKFCAPDAV-TFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           L +   M   K+     V T+  +I GL   GR+ E +  LYQ M Q    P    +N +
Sbjct: 605 LDLQQRM--HKYGIKSTVRTYHQLISGLGGAGRLNE-MEYLYQKMMQNNVVPSNAIHNIM 661

Query: 358 LRGLFRLRRVEEAKEVFNCML 378
           +    +     +A+++   ML
Sbjct: 662 VEAYSKYGNEIKAEDLRKEML 682



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 95/419 (22%), Positives = 188/419 (44%), Gaps = 9/419 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R+GE   L  +M S+  VP+  +Y+ L  G  R G+      +F +    GV   
Sbjct: 280 LCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIG 339

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             T S+L+ G+ +   V  A  ++  L         L      +  L++  C+ G +   
Sbjct: 340 DYTCSILLNGLCKDGKVSIAEEVLQSLV-----NAGLVPTRVIYNTLINGYCQTGELEGA 394

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           F     M       +      +I+ LC++ R   A  ++  M+  G+ P++ ++N+++  
Sbjct: 395 FSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDA 454

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
             + G   + + +L E  + G  P+  +Y  +V   C    + +A  +L  M  K  +  
Sbjct: 455 YGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPN 514

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQ-CQPDVITLNTVINGFCKMGRIEEALKVL 302
            ++ N  + A  +   P +   +LV  +++    P ++T N +I G C   +I EA +++
Sbjct: 515 AQVYNAIIDAY-VEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEII 573

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
           N +   +   PDAV++ T+I      G I +AL+ L Q M + G    + TY+ ++ GL 
Sbjct: 574 NSLSNHRLI-PDAVSYNTLISACCYRGNIDKALD-LQQRMHKYGIKSTVRTYHQLISGLG 631

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
              R+ E + ++  M+   VV  +  + I+++   +     +A+    +++   N HD+
Sbjct: 632 GAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRKEMLQKRNNHDD 690


>gi|413933767|gb|AFW68318.1| hypothetical protein ZEAMMB73_786057 [Zea mays]
          Length = 645

 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 143/494 (28%), Positives = 223/494 (45%), Gaps = 6/494 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R+ +A  +  DM  RG  P    Y   +   CR      A  V  ++   G   +
Sbjct: 121 LCARGRIADALAVLDDMARRGCAPTPPMYHVTLEAACRASGFRGAVGVLRDLHGRGCALD 180

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
               +++++ V     V+ A  L+  L      E D+   NA    L  +  R G+V ++
Sbjct: 181 VGNCNLVLQAVCDQGPVDEAVRLLRDLLPSFGCEPDVVSYNAVLRGLCMAR-RWGHVQDL 239

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
               E+M              +I  LCR+G       V   M + G  P +  Y +I+ G
Sbjct: 240 M---EEMVAAGCPPNIVTFSTLIGHLCRNGLFERVHEVHAQMAEHGCAPDVRMYATIIDG 296

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           +CK      A  +L     +G  P+   Y  L++GLC     E+A  +L  M  K     
Sbjct: 297 VCKEERLEVARGILNRMPSYGLSPNVVCYNTLLKGLCSADRWEEAEGLLAEMFDKDCPLD 356

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               NI +  LC       ++ VL  ML+  C PDVIT  TVINGFCK G I+EA+ +L 
Sbjct: 357 DVTFNILVDFLCQNGLVDRVIEVLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLR 416

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            M A   C P+ V++T ++ GL +  R  +A  L+ Q++ Q+G  P  VT+N ++  L +
Sbjct: 417 SMAACG-CRPNTVSYTIVLKGLCSAERWVDAEELMSQMI-QQGCPPNPVTFNTLINFLCK 474

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
              VE+A E+   ML  G   D  +Y+ VIDGL ++   DEA    + +V      +  +
Sbjct: 475 KGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGNTDEALELLNVMVKKGMSPNTII 534

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y+++   L   G+I++ +     + D+ V  + V YN VI   CK      A + L  M 
Sbjct: 535 YSSIASALSGEGRINKVIQMFENIQDTTVRSDAVLYNAVISSLCKRGETDRAIEFLAYMV 594

Query: 484 KNGLNPDAVTWRIL 497
            +G  P+  T+ IL
Sbjct: 595 SSGCVPNESTYTIL 608



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 123/500 (24%), Positives = 220/500 (44%), Gaps = 46/500 (9%)

Query: 6   GLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSL 65
           G  R G+         S    PN  +Y  L+   C  G +  A  V D+M   G  P   
Sbjct: 88  GYCRAGQLAAARRLAASVPVAPNAYTYFPLVRALCARGRIADALAVLDDMARRGCAPTPP 147

Query: 66  TYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLV-DSLCREGYVNEVF 124
            Y V +    R      A  ++  L  R      L V N    NLV  ++C +G V+E  
Sbjct: 148 MYHVTLEAACRASGFRGAVGVLRDLHGRGCA---LDVGNC---NLVLQAVCDQGPVDEAV 201

Query: 125 RIAEDM-PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           R+  D+ P      +  +   ++  LC + R      ++  M   G  P++V++++++  
Sbjct: 202 RLLRDLLPSFGCEPDVVSYNAVLRGLCMARRWGHVQDLMEEMVAAGCPPNIVTFSTLIGH 261

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LC++G   R +++  +  + G  P    Y  +++G+C E  LE AR +L  M        
Sbjct: 262 LCRNGLFERVHEVHAQMAEHGCAPDVRMYATIIDGVCKEERLEVARGILNRM-------- 313

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                           P+  L+           P+V+  NT++ G C   R EEA  +L 
Sbjct: 314 ----------------PSYGLS-----------PNVVCYNTLLKGLCSADRWEEAEGLLA 346

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           +M   K C  D VTF  ++  L   G +   + +L Q++ + G  P ++TY  V+ G  +
Sbjct: 347 EMF-DKDCPLDDVTFNILVDFLCQNGLVDRVIEVLEQML-EHGCMPDVITYTTVINGFCK 404

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
              ++EA  +   M   G   ++ +Y IV+ GLC + +  +A+     ++      +   
Sbjct: 405 EGLIDEAVMLLRSMAACGCRPNTVSYTIVLKGLCSAERWVDAEELMSQMIQQGCPPNPVT 464

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           +  +I  LC+ G + +A+  L +++ +G +P+++ Y+ VIDG  K     EA ++L  M 
Sbjct: 465 FNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGNTDEALELLNVMV 524

Query: 484 KNGLNPDAVTW-RILDKLHG 502
           K G++P+ + +  I   L G
Sbjct: 525 KKGMSPNTIIYSSIASALSG 544



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 105/392 (26%), Positives = 185/392 (47%), Gaps = 6/392 (1%)

Query: 107 FANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMR 166
           +  +V   CR G +    R+A  +P   +    F    ++ +LC  GR   A  V+  M 
Sbjct: 82  YNAMVAGYCRAGQLAAARRLAASVPVAPNAYTYFP---LVRALCARGRIADALAVLDDMA 138

Query: 167 KRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLE 226
           +RG  P+   Y+  +   C+  G   A  +L +    G         ++++ +C +  ++
Sbjct: 139 RRGCAPTPPMYHVTLEAACRASGFRGAVGVLRDLHGRGCALDVGNCNLVLQAVCDQGPVD 198

Query: 227 KARKVLQFMLSKKDVDRTRIC-NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTV 285
           +A ++L+ +L     +   +  N  LR LC+ +    + +++  M+   C P+++T +T+
Sbjct: 199 EAVRLLRDLLPSFGCEPDVVSYNAVLRGLCMARRWGHVQDLMEEMVAAGCPPNIVTFSTL 258

Query: 286 INGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQR 345
           I   C+ G  E   +V   M A   CAPD   + TII G+    R++ A  +L + MP  
Sbjct: 259 IGHLCRNGLFERVHEVHAQM-AEHGCAPDVRMYATIIDGVCKEERLEVARGILNR-MPSY 316

Query: 346 GYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA 405
           G SP +V YN +L+GL    R EEA+ +   M       D  T+ I++D LC++  +D  
Sbjct: 317 GLSPNVVCYNTLLKGLCSADRWEEAEGLLAEMFDKDCPLDDVTFNILVDFLCQNGLVDRV 376

Query: 406 KRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDG 465
               + ++    + D   Y  +I G C+ G I EAV  L  +   G  PN V Y +V+ G
Sbjct: 377 IEVLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLRSMAACGCRPNTVSYTIVLKG 436

Query: 466 ACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            C      +A +++ +M + G  P+ VT+  L
Sbjct: 437 LCSAERWVDAEELMSQMIQQGCPPNPVTFNTL 468



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 102/409 (24%), Positives = 177/409 (43%), Gaps = 46/409 (11%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R G    L  +M + G  PN+V+++TLI   CR G  +  ++V  +M   G  P+
Sbjct: 227 LCMARRWGHVQDLMEEMVAAGCPPNIVTFSTLIGHLCRNGLFERVHEVHAQMAEHGCAPD 286

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
              Y+ ++ GV +   +E A  ++ ++         LS N   +  L+  LC      E 
Sbjct: 287 VRMYATIIDGVCKEERLEVARGILNRM-----PSYGLSPNVVCYNTLLKGLCSADRWEEA 341

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             +  +M       ++     ++D LC++G       V+  M + G  P +++Y ++++G
Sbjct: 342 EGLLAEMFDKDCPLDDVTFNILVDFLCQNGLVDRVIEVLEQMLEHGCMPDVITYTTVING 401

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK G    A  LL      G  P+  +Y ++++GLC       A +++  M+ +     
Sbjct: 402 FCKEGLIDEAVMLLRSMAACGCRPNTVSYTIVLKGLCSAERWVDAEELMSQMIQQGCPPN 461

Query: 244 TRICNIYLRALC---LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
               N  +  LC   L++   ELL     ML   C PD+I+ +TVI+G  K G  +EAL+
Sbjct: 462 PVTFNTLINFLCKKGLVEQAIELLKQ---MLVNGCSPDLISYSTVIDGLGKAGNTDEALE 518

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQV------------------- 341
           +LN MV  K  +P+ + +++I   L   GRI + + +   +                   
Sbjct: 519 LLNVMVK-KGMSPNTIIYSSIASALSGEGRINKVIQMFENIQDTTVRSDAVLYNAVISSL 577

Query: 342 ---------------MPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN 375
                          M   G  P   TY  ++RGL     V+EA+E+  
Sbjct: 578 CKRGETDRAIEFLAYMVSSGCVPNESTYTILIRGLASEGFVKEAQEILT 626


>gi|224713522|gb|ACN62068.1| PPR-814b [Zea mays]
          Length = 814

 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 125/510 (24%), Positives = 240/510 (47%), Gaps = 45/510 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHV--PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHC 58
           +  LC   + G+A  L   M   G V  P+VV+Y+T+I G+ + G+++ A  +F EM   
Sbjct: 189 LKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYSTVIDGFFKEGDVNKACDLFKEMVQR 248

Query: 59  GVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREG 118
           G+ P+ +TYS +V  + + R +++A   +     R    + +  NN  + NL+      G
Sbjct: 249 GIPPDFVTYSSVVHALCKARAMDKAEAFL-----RQMVNKGVLPNNWTYNNLIYGYSSTG 303

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
              E  R+ ++M +   + +      ++ SLC+ G+   A  V   M  +G  P++ SY 
Sbjct: 304 QWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPNVFSYT 363

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
            +++G    G  +    L +  +  G  P  +T+ VL++       L+KA  +   M   
Sbjct: 364 IMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDH 423

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
                                                +PDV+T  TVI   C++G++++A
Sbjct: 424 G-----------------------------------VKPDVVTYRTVIAALCRIGKMDDA 448

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
           ++  N M+  +  APD   +  +I G    G + +A  L+ ++M   G    IV +++++
Sbjct: 449 MEKFNQMI-DQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIM-NNGMHLDIVFFSSII 506

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
             L +L RV +A+ +F+  + +G+   +  Y++++DG C   ++++A R +D +V     
Sbjct: 507 NNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIE 566

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI 478
            ++ VY  ++ G C+ G+I E +    E++  G+ P+ + YN++IDG  +      A   
Sbjct: 567 PNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVK 626

Query: 479 LREMRKNGLNPDAVTWRI-LDKLHGNRGND 507
             EM ++G+  +  T+ I L  L  NR  D
Sbjct: 627 FHEMTESGIAMNKCTYNIVLRGLFKNRCFD 656



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 123/490 (25%), Positives = 239/490 (48%), Gaps = 11/490 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC    + +A      M ++G +PN  +Y  LI+GY  TG+   A +VF EMR   +LP+
Sbjct: 264 LCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPD 323

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +T S+L+  + +   ++ A      +++ M  +   + N  ++  +++    +G + ++
Sbjct: 324 VVTLSMLMGSLCKYGKIKEAR----DVFDTMAMKGQ-NPNVFSYTIMLNGYATKGCLVDM 378

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             + + M       + +    +I +    G    A  +   MR  G+ P +V+Y +++  
Sbjct: 379 TDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAA 438

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVL-QFMLSKKDVD 242
           LC+ G    A +   + I  G  P ++ Y  L++G C    L KA++++ + M +   +D
Sbjct: 439 LCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLD 498

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
                +I +  LC +    +  N+    +     P  +  + +++G+C +G++E+AL+V 
Sbjct: 499 IVFFSSI-INNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVF 557

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
           + MV+     P+ V + T++ G   +GRI E L+ L++ M Q+G  P  + YN ++ GLF
Sbjct: 558 DAMVSAGI-EPNDVVYGTLVNGYCKIGRIDEGLS-LFREMLQKGIKPSTILYNIIIDGLF 615

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
              R   AK  F+ M   G+  +  TY IV+ GL ++   DEA   + ++    N+  N 
Sbjct: 616 EAGRTVPAKVKFHEMTESGIAMNKCTYNIVLRGLFKNRCFDEAIFLFKEL-RAMNVKINI 674

Query: 423 V-YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
           +    MI G+ ++ ++ EA      +  SG+ P +V Y+++I    K  +  EA  +   
Sbjct: 675 ITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAEDMFSS 734

Query: 482 MRKNGLNPDA 491
           M+  G  PD+
Sbjct: 735 MQNAGCEPDS 744



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 125/493 (25%), Positives = 227/493 (46%), Gaps = 15/493 (3%)

Query: 13  AHKLFFDMKSRGHVPNVVS-----YTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTY 67
           A  LF    SR   P V+S     Y  L+    R    ++A   F ++   G+  N +  
Sbjct: 90  AVALFNRAASRAQGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIA 149

Query: 68  SVLVRGVLRTRDVERA-NVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRI 126
           + L++G    +  + A ++L+ +  E     +  S     ++ L+ SLC +G   +   +
Sbjct: 150 NHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFS-----YSILLKSLCDQGKSGQADDL 204

Query: 127 AEDMPQGKSV--NEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
              M +G +V   +  A   +ID   + G  + A  +   M +RG+ P  V+Y+S+VH L
Sbjct: 205 LRMMAEGGAVCSPDVVAYSTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHAL 264

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
           CK     +A   L + +  G LP+  TY  L+ G       ++A +V + M     +   
Sbjct: 265 CKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDV 324

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
              ++ + +LC      E  +V   M      P+V +   ++NG+   G + + +  L D
Sbjct: 325 VTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPNVFSYTIMLNGYATKGCLVD-MTDLFD 383

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
           ++ G   APD  TF  +I    N G + +A+ +++  M   G  P +VTY  V+  L R+
Sbjct: 384 LMLGDGIAPDIYTFNVLIKAYANCGMLDKAM-IIFNEMRDHGVKPDVVTYRTVIAALCRI 442

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY 424
            ++++A E FN M+  GV  D   Y  +I G C    L +AK    +I+      D   +
Sbjct: 443 GKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFF 502

Query: 425 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484
           +++I  LC+ G++ +A +     V+ G+ P  V Y++++DG C +    +A ++   M  
Sbjct: 503 SSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVS 562

Query: 485 NGLNPDAVTWRIL 497
            G+ P+ V +  L
Sbjct: 563 AGIEPNDVVYGTL 575



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 120/506 (23%), Positives = 225/506 (44%), Gaps = 42/506 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M  LC   ++ EA  +F  M  +G  PNV SYT +++GY   G +     +FD M   G+
Sbjct: 331 MGSLCKYGKIKEARDVFDTMAMKGQNPNVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGI 390

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+  T++VL++       +++A ++  ++      +  +  +   +  ++ +LCR G +
Sbjct: 391 APDIYTFNVLIKAYANCGMLDKAMIIFNEM-----RDHGVKPDVVTYRTVIAALCRIGKM 445

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           ++       M       +++A   +I   C  G    A  ++  +   G+   +V ++SI
Sbjct: 446 DDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSI 505

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++ LCK G  M A  + +  +  G  P+   Y +L++G C    +EKA +V   M+S   
Sbjct: 506 INNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVS--- 562

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                              +P+ +   T++NG+CK+GRI+E L 
Sbjct: 563 --------------------------------AGIEPNDVVYGTLVNGYCKIGRIDEGLS 590

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +  +M+  K   P  + +  II GL   GR   A  + +  M + G +    TYN VLRG
Sbjct: 591 LFREMLQ-KGIKPSTILYNIIIDGLFEAGRTVPA-KVKFHEMTESGIAMNKCTYNIVLRG 648

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           LF+ R  +EA  +F  +  + V  +  T   +I G+ ++ +++EAK  +  I     +  
Sbjct: 649 LFKNRCFDEAIFLFKELRAMNVKINIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPC 708

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              Y+ MI  L + G + EA      + ++G  P+    N V+    K +    A   L 
Sbjct: 709 VVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAGAYLS 768

Query: 481 EMRKNGLNPDAVTWRILDKLHGNRGN 506
           ++ +   + + +T  +L  L  ++G 
Sbjct: 769 KIDERNFSLEHLTTMLLVDLFSSKGT 794



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 126/238 (52%), Gaps = 3/238 (1%)

Query: 270 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG 329
           +L+T  + ++I  N ++ GFC+  R +EAL +L        C PD  +++ ++  L + G
Sbjct: 137 LLRTGLRVNIIIANHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQG 196

Query: 330 RIQEALNLLYQVMPQRGY--SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADST 387
           +  +A +LL ++M + G   SP +V Y+ V+ G F+   V +A ++F  M+  G+  D  
Sbjct: 197 KSGQADDLL-RMMAEGGAVCSPDVVAYSTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFV 255

Query: 388 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYEL 447
           TY+ V+  LC++  +D+A+ F   +V    + +N+ Y  +I G   +G+  EAV    E+
Sbjct: 256 TYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEM 315

Query: 448 VDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
               + P++V  ++++   CK    +EA  +   M   G NP+  ++ I+   +  +G
Sbjct: 316 RRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPNVFSYTIMLNGYATKG 373



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 5/117 (4%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           RV EA  LF  +   G VP VV+Y+ +I    + G ++ A  +F  M++ G  P+S   +
Sbjct: 689 RVEEAKDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLN 748

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFR 125
            +VR +L+  ++ RA   + K+ ER     + S+ +     LVD    +G   E  R
Sbjct: 749 HVVRELLKKNEIVRAGAYLSKIDER-----NFSLEHLTTMLLVDLFSSKGTCREHIR 800


>gi|449454285|ref|XP_004144886.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17140-like [Cucumis sativus]
 gi|449472527|ref|XP_004153621.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17140-like [Cucumis sativus]
          Length = 875

 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 148/541 (27%), Positives = 236/541 (43%), Gaps = 69/541 (12%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +  LC +  +  A ++F  M  +G  PN  S   L+ GYCR G       + DEMR  G 
Sbjct: 160 ISALCEMGYLENAREVFDKMSEKGCKPNEFSLGILVRGYCRAGLHSHGIDLLDEMRSSGA 219

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           LPN + Y+ ++  +      E   V   KL E+M+E   LS +   F   + +LC+ G +
Sbjct: 220 LPNRVAYNTVISSLCG----EGQTVEAEKLVEKMREV-GLSPDIVTFNCRIAALCKSGQI 274

Query: 121 NEVFRIAEDM--------PQGKSVN-----EEFACGHMIDS------------------- 148
            E  RI  DM        P+  +V      E F    M +                    
Sbjct: 275 LEASRIFRDMQIDEEMGLPKPNTVTYNLMLEGFCSEGMFEEARAIFDSMKNSETLSLRSY 334

Query: 149 ------LCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQ 202
                 L RSG+   A  ++  M ++ + P+L SYN +VHGLCK+G    A  +L    +
Sbjct: 335 NIWMLGLVRSGKLLEAHLILNEMAEKNIKPNLYSYNILVHGLCKYGMFSDARSILGLMRE 394

Query: 203 FGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTE 262
            G  P   TY  L+ G C    + +A  VL+ M+          CNI L +L      +E
Sbjct: 395 SGVAPDTVTYSTLLHGYCRRGKILEANYVLREMIQVGCFPNMYTCNILLHSLWKEGRASE 454

Query: 263 LLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA--------------- 307
             ++L  M +     D +T NT+ING CK G +++A+++++ M                 
Sbjct: 455 AEDLLQMMNERGYGLDNVTCNTMINGLCKAGNLDKAIEIVSGMWTRGSASLGNLGNSFID 514

Query: 308 -------GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
                  GK C PD++T+ TII GL  VGR+ EA   L +++ ++  SP  + ++  +  
Sbjct: 515 LFDIRNNGKKCLPDSITYATIIGGLCKVGRVDEAKKKLLEMIGKK-LSPDSLIFDTFIYN 573

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
             +  ++  A  V   M   G      TY  +I GL   NQ+ E     D++       +
Sbjct: 574 YCKQGKLSSAFRVLKEMEKKGCNKSLRTYNSLIQGLGSENQIFEIYGLMDEMKERGIFPN 633

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDG---ACKLSMKREAYQ 477
            Y Y  +I  L   GK+ +A   L E++  G++PNI  + ++I     AC     +E ++
Sbjct: 634 VYTYNNIISCLSEGGKLKDATCLLDEMLQKGISPNIYTFRILIGAFFKACDFGAAQELFE 693

Query: 478 I 478
           I
Sbjct: 694 I 694



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 140/568 (24%), Positives = 252/568 (44%), Gaps = 71/568 (12%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMR---H 57
           +  LCG  +  EA KL   M+  G  P++V++   I   C++G++  A ++F +M+    
Sbjct: 230 ISSLCGEGQTVEAEKLVEKMREVGLSPDIVTFNCRIAALCKSGQILEASRIFRDMQIDEE 289

Query: 58  CGVL-PNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCR 116
            G+  PN++TY++++ G       E A  +    ++ MK  E LS+ +     L   L R
Sbjct: 290 MGLPKPNTVTYNLMLEGFCSEGMFEEARAI----FDSMKNSETLSLRSYNIWML--GLVR 343

Query: 117 EGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVS 176
            G + E   I  +M +       ++   ++  LC+ G    A  ++ +MR+ G+ P  V+
Sbjct: 344 SGKLLEAHLILNEMAEKNIKPNLYSYNILVHGLCKYGMFSDARSILGLMRESGVAPDTVT 403

Query: 177 YNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFML 236
           Y++++HG C+ G  + A  +L E IQ G  P+ +T  +L+  L  E    +A  +LQ M 
Sbjct: 404 YSTLLHGYCRRGKILEANYVLREMIQVGCFPNMYTCNILLHSLWKEGRASEAEDLLQMMN 463

Query: 237 SKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQ-----------------------T 273
            +        CN  +  LC   N  + + ++  M                          
Sbjct: 464 ERGYGLDNVTCNTMINGLCKAGNLDKAIEIVSGMWTRGSASLGNLGNSFIDLFDIRNNGK 523

Query: 274 QCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQE 333
           +C PD IT  T+I G CK+GR++EA K L +M+ GK  +PD++ F T I+     G++  
Sbjct: 524 KCLPDSITYATIIGGLCKVGRVDEAKKKLLEMI-GKKLSPDSLIFDTFIYNYCKQGKLSS 582

Query: 334 ALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVI 393
           A  +L + M ++G +  + TYN++++GL    ++ E   + + M   G+  +  TY  +I
Sbjct: 583 AFRVLKE-MEKKGCNKSLRTYNSLIQGLGSENQIFEIYGLMDEMKERGIFPNVYTYNNII 641

Query: 394 DGLCESNQLDEAKRFWDDIVW---PSNI-------------------------------H 419
             L E  +L +A    D+++      NI                               H
Sbjct: 642 SCLSEGGKLKDATCLLDEMLQKGISPNIYTFRILIGAFFKACDFGAAQELFEIALSLCGH 701

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
              +Y+ M   L   G+  +A       +D  +      Y  +I+  CK     +A  IL
Sbjct: 702 KESLYSFMFNELLAGGETLKAKELFEAALDRSLALKNFLYRDLIEKLCKDGKLDDASFIL 761

Query: 480 REMRKNGLNPDAVTW-RILDKLHGNRGN 506
            +M     + D  ++  ++D+L G RG+
Sbjct: 762 HKMMDKQYSFDPASFMPVIDEL-GKRGS 788



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 123/506 (24%), Positives = 217/506 (42%), Gaps = 71/506 (14%)

Query: 4   LCGLSRVG---EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           + GL R G   EAH +  +M  +   PN+ SY  L+HG C+ G    A  +   MR  GV
Sbjct: 338 MLGLVRSGKLLEAHLILNEMAEKNIKPNLYSYNILVHGLCKYGMFSDARSILGLMRESGV 397

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+++TYS L+ G                                         CR G +
Sbjct: 398 APDTVTYSTLLHGY----------------------------------------CRRGKI 417

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E   +  +M Q       + C  ++ SL + GR   A  ++ +M +RG     V+ N++
Sbjct: 418 LEANYVLREMIQVGCFPNMYTCNILLHSLWKEGRASEAEDLLQMMNERGYGLDNVTCNTM 477

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGY-----------------------LPSEHTYKVLVE 217
           ++GLCK G   +A +++      G                        LP   TY  ++ 
Sbjct: 478 INGLCKAGNLDKAIEIVSGMWTRGSASLGNLGNSFIDLFDIRNNGKKCLPDSITYATIIG 537

Query: 218 GLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQP 277
           GLC    +++A+K L  M+ KK    + I + ++   C     +    VL  M +  C  
Sbjct: 538 GLCKVGRVDEAKKKLLEMIGKKLSPDSLIFDTFIYNYCKQGKLSSAFRVLKEMEKKGCNK 597

Query: 278 DVITLNTVINGFCKMGRIEEALKVLNDMVA-GKFCAPDAVTFTTIIFGLLNVGRIQEALN 336
            + T N++I G     +I E   ++++M   G F  P+  T+  II  L   G++++A  
Sbjct: 598 SLRTYNSLIQGLGSENQIFEIYGLMDEMKERGIF--PNVYTYNNIISCLSEGGKLKDATC 655

Query: 337 LLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 396
           LL +++ Q+G SP I T+  ++   F+      A+E+F   L +    +S  Y+ + + L
Sbjct: 656 LLDEML-QKGISPNIYTFRILIGAFFKACDFGAAQELFEIALSLCGHKESL-YSFMFNEL 713

Query: 397 CESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNI 456
               +  +AK  ++  +  S    N++Y  +I+ LC+ GK+ +A   L++++D   + + 
Sbjct: 714 LAGGETLKAKELFEAALDRSLALKNFLYRDLIEKLCKDGKLDDASFILHKMMDKQYSFDP 773

Query: 457 VCYNVVIDGACKLSMKREAYQILREM 482
             +  VID   K   K  A +    M
Sbjct: 774 ASFMPVIDELGKRGSKHAADEFAERM 799



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 94/381 (24%), Positives = 159/381 (41%), Gaps = 40/381 (10%)

Query: 116 REGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLV 175
           +E  V+ V  + +DM   +   + +    +I +LC  G    A  V   M ++G  P+  
Sbjct: 130 KESRVDCVIWLYKDMAVARVKPQTYTFNLLISALCEMGYLENAREVFDKMSEKGCKPNEF 189

Query: 176 SYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM 235
           S   +V G C+ G       LL+E    G LP+   Y  ++  LCGE    +A K+++  
Sbjct: 190 SLGILVRGYCRAGLHSHGIDLLDEMRSSGALPNRVAYNTVISSLCGEGQTVEAEKLVE-- 247

Query: 236 LSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 295
                                             M +    PD++T N  I   CK G+I
Sbjct: 248 ---------------------------------KMREVGLSPDIVTFNCRIAALCKSGQI 274

Query: 296 EEALKVLNDMVAGK---FCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIV 352
            EA ++  DM   +      P+ VT+  ++ G  + G  +EA  +   +      S  + 
Sbjct: 275 LEASRIFRDMQIDEEMGLPKPNTVTYNLMLEGFCSEGMFEEARAIFDSMKNSETLS--LR 332

Query: 353 TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI 412
           +YN  + GL R  ++ EA  + N M    +  +  +Y I++ GLC+     +A+     +
Sbjct: 333 SYNIWMLGLVRSGKLLEAHLILNEMAEKNIKPNLYSYNILVHGLCKYGMFSDARSILGLM 392

Query: 413 VWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMK 472
                  D   Y+ ++ G CR GKI EA + L E++  G  PN+   N+++    K    
Sbjct: 393 RESGVAPDTVTYSTLLHGYCRRGKILEANYVLREMIQVGCFPNMYTCNILLHSLWKEGRA 452

Query: 473 REAYQILREMRKNGLNPDAVT 493
            EA  +L+ M + G   D VT
Sbjct: 453 SEAEDLLQMMNERGYGLDNVT 473



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 80/264 (30%), Positives = 135/264 (51%), Gaps = 9/264 (3%)

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
           +T   N+ + ALC +        V   M +  C+P+  +L  ++ G+C+ G     + +L
Sbjct: 152 QTYTFNLLISALCEMGYLENAREVFDKMSEKGCKPNEFSLGILVRGYCRAGLHSHGIDLL 211

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
           ++M +     P+ V + T+I  L   G+  EA  L+ + M + G SP IVT+N  +  L 
Sbjct: 212 DEMRSSG-ALPNRVAYNTVISSLCGEGQTVEAEKLV-EKMREVGLSPDIVTFNCRIAALC 269

Query: 363 RLRRVEEAKEVFNCML---GIGVVADST-TYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
           +  ++ EA  +F  M     +G+   +T TY ++++G C     +EA+  +D +   S  
Sbjct: 270 KSGQILEASRIFRDMQIDEEMGLPKPNTVTYNLMLEGFCSEGMFEEARAIFDSMK-NSET 328

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI 478
                Y   + GL RSGK+ EA   L E+ +  + PN+  YN+++ G CK  M  +A  I
Sbjct: 329 LSLRSYNIWMLGLVRSGKLLEAHLILNEMAEKNIKPNLYSYNILVHGLCKYGMFSDARSI 388

Query: 479 LREMRKNGLNPDAVTWRILDKLHG 502
           L  MR++G+ PD VT+  L  LHG
Sbjct: 389 LGLMRESGVAPDTVTYSTL--LHG 410



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 87/176 (49%), Gaps = 1/176 (0%)

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVT-YNAVLRGLFRLRRVEEAKEVFNCML 378
           +++  L ++G ++ A++    +  +  + P  ++ YN + R   +  RV+    ++  M 
Sbjct: 86  SLVRTLADLGLLENAISQFRSLRDRFPHDPPPISFYNLLFRCSLKESRVDCVIWLYKDMA 145

Query: 379 GIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIH 438
              V   + T+ ++I  LCE   L+ A+  +D +       + +    +++G CR+G   
Sbjct: 146 VARVKPQTYTFNLLISALCEMGYLENAREVFDKMSEKGCKPNEFSLGILVRGYCRAGLHS 205

Query: 439 EAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
             +  L E+  SG  PN V YN VI   C      EA +++ +MR+ GL+PD VT+
Sbjct: 206 HGIDLLDEMRSSGALPNRVAYNTVISSLCGEGQTVEAEKLVEKMREVGLSPDIVTF 261


>gi|224136366|ref|XP_002326842.1| predicted protein [Populus trichocarpa]
 gi|222835157|gb|EEE73592.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 140/502 (27%), Positives = 230/502 (45%), Gaps = 53/502 (10%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C    + EA  LF  MK  GH+PNVV Y TL++GY +  ++  A  +++EM+   V
Sbjct: 226 INAFCNQGNMMEARNLFDGMKEAGHIPNVVCYNTLMNGYVKARDIGQANMLYEEMKSKAV 285

Query: 61  LPNSLTYSVLVRGVLR-TRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGY 119
            P+  T+++LV G  R  R+ +R  +L      R   +      ++ +   V  LC  G+
Sbjct: 286 APDCTTFNILVAGHYRYGREEDRDRLL------RDLSQSGSLSISSLYNICVSGLCWAGW 339

Query: 120 VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           ++E  +  EDM +                                   +G+TP++V++NS
Sbjct: 340 LDEAMKFLEDMLE-----------------------------------KGITPTVVAFNS 364

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM---- 235
           I+    + G   +AY+     ++FG  PS  T   L+ GL     L++AR +L  M    
Sbjct: 365 IIAAYSRAGLEEKAYKAYRMMVKFGLFPSSLTCSSLIMGLSKLWRLQEARDLLYEMIVEG 424

Query: 236 LSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 295
           L       T + + Y R +  +     L N    M      PD +  +  ING   +G +
Sbjct: 425 LPINKAAFTLLLDGYFR-MGDVAGAYSLWNE---MEGRGIHPDAVAFSAFINGLSIVGLV 480

Query: 296 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN 355
           +EA  V   M    F  P+   + ++I G  N GR+QEAL +L + M ++G  P I T N
Sbjct: 481 DEAYDVFLQMSKKGF-MPNNFVYNSLIRGFCNSGRLQEAL-MLEREMARKGLLPDIFTTN 538

Query: 356 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP 415
            ++ GL +  R++ A +VF  M   G++ D  TY  +IDG C++          + +   
Sbjct: 539 IIINGLCKEGRMKSASDVFRNMHHTGLIPDIVTYNTLIDGYCKAFDTVSTDEVVNKMYAT 598

Query: 416 SNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREA 475
               D   Y   + GLC   K+  AV  L EL+ +GV P+ V YN V++G C   ++R A
Sbjct: 599 GWDPDITTYNIRLHGLCTGRKMSRAVMMLEELISAGVVPDTVTYNTVMNGVCTDVLER-A 657

Query: 476 YQILREMRKNGLNPDAVTWRIL 497
             +  ++ K    P+ VT  +L
Sbjct: 658 MIVTAKLLKMAFVPNVVTANLL 679



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 129/475 (27%), Positives = 226/475 (47%), Gaps = 42/475 (8%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M   G  P++V++ T+I+ +C  G M  A  +FD M+  G +PN + Y+ L+ G ++ RD
Sbjct: 210 MIDNGCTPSLVTFGTVINAFCNQGNMMEARNLFDGMKEAGHIPNVVCYNTLMNGYVKARD 269

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
           + +AN+L    +E MK +  ++ +   F  LV    R G   +  R+  D+ Q  S++  
Sbjct: 270 IGQANML----YEEMKSKA-VAPDCTTFNILVAGHYRYGREEDRDRLLRDLSQSGSLSIS 324

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
                 +  LC +G    A + +  M ++G+TP++V++NSI+    + G   +AY+    
Sbjct: 325 SLYNICVSGLCWAGWLDEAMKFLEDMLEKGITPTVVAFNSIIAAYSRAGLEEKAYKAYRM 384

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
            ++FG  PS  T   L+ GL     L++AR +L  M+              +  L + K 
Sbjct: 385 MVKFGLFPSSLTCSSLIMGLSKLWRLQEARDLLYEMI--------------VEGLPINKA 430

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
              LL                     ++G+ +MG +  A  + N+M  G+   PDAV F+
Sbjct: 431 AFTLL---------------------LDGYFRMGDVAGAYSLWNEM-EGRGIHPDAVAFS 468

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
             I GL  VG + EA ++  Q M ++G+ P    YN+++RG     R++EA  +   M  
Sbjct: 469 AFINGLSIVGLVDEAYDVFLQ-MSKKGFMPNNFVYNSLIRGFCNSGRLQEALMLEREMAR 527

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
            G++ D  T  I+I+GLC+  ++  A   + ++     I D   Y  +I G C++     
Sbjct: 528 KGLLPDIFTTNIIINGLCKEGRMKSASDVFRNMHHTGLIPDIVTYNTLIDGYCKAFDTVS 587

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
               + ++  +G  P+I  YN+ + G C       A  +L E+   G+ PD VT+
Sbjct: 588 TDEVVNKMYATGWDPDITTYNIRLHGLCTGRKMSRAVMMLEELISAGVVPDTVTY 642



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 136/539 (25%), Positives = 233/539 (43%), Gaps = 79/539 (14%)

Query: 34  TLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWER 93
           TL+ G+ +      A ++   MR  G+ P+S   ++L + +LR  D    +  ++KL   
Sbjct: 84  TLMRGFLKVEMGCEALEIVGRMREVGLRPSSSAITILFKLLLRIGD----HGSVWKLLRG 139

Query: 94  MKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSG 153
           M  +     N   F  ++   CR+G+V     +   M + K   + +A   +I++ C  G
Sbjct: 140 MIHQGPRPCNRN-FNAVILGFCRKGHVKVGESLLCVMQKFKCQPDVYAYNILINAYCTRG 198

Query: 154 RNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYK 213
           +   A   +  M   G TPSLV++ ++++  C  G  M A  L +   + G++P+   Y 
Sbjct: 199 QTFDALGWMRFMIDNGCTPSLVTFGTVINAFCNQGNMMEARNLFDGMKEAGHIPNVVCYN 258

Query: 214 VLVEGLCGESDLEKARKVLQFMLSK--------------------KDVDRTRIC------ 247
            L+ G     D+ +A  + + M SK                    ++ DR R+       
Sbjct: 259 TLMNGYVKARDIGQANMLYEEMKSKAVAPDCTTFNILVAGHYRYGREEDRDRLLRDLSQS 318

Query: 248 ---------NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
                    NI +  LC      E +  L  ML+    P V+  N++I  + + G  E+A
Sbjct: 319 GSLSISSLYNICVSGLCWAGWLDEAMKFLEDMLEKGITPTVVAFNSIIAAYSRAGLEEKA 378

Query: 299 LKVLNDMVA-GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQV---------------- 341
            K    MV  G F  P ++T +++I GL  + R+QEA +LLY++                
Sbjct: 379 YKAYRMMVKFGLF--PSSLTCSSLIMGLSKLWRLQEARDLLYEMIVEGLPINKAAFTLLL 436

Query: 342 ------------------MPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 383
                             M  RG  P  V ++A + GL  +  V+EA +VF  M   G +
Sbjct: 437 DGYFRMGDVAGAYSLWNEMEGRGIHPDAVAFSAFINGLSIVGLVDEAYDVFLQMSKKGFM 496

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
            ++  Y  +I G C S +L EA     ++     + D +    +I GLC+ G++  A   
Sbjct: 497 PNNFVYNSLIRGFCNSGRLQEALMLEREMARKGLLPDIFTTNIIINGLCKEGRMKSASDV 556

Query: 444 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
              +  +G+ P+IV YN +IDG CK        +++ +M   G +PD  T+ I  +LHG
Sbjct: 557 FRNMHHTGLIPDIVTYNTLIDGYCKAFDTVSTDEVVNKMYATGWDPDITTYNI--RLHG 613



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 146/300 (48%), Gaps = 14/300 (4%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           L  L R+ EA  L ++M   G   N  ++T L+ GY R G++  AY +++EM   G+ P+
Sbjct: 404 LSKLWRLQEARDLLYEMIVEGLPINKAAFTLLLDGYFRMGDVAGAYSLWNEMEGRGIHPD 463

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           ++ +S  + G+     V+ A  +  ++      ++    NN  + +L+   C  G + E 
Sbjct: 464 AVAFSAFINGLSIVGLVDEAYDVFLQM-----SKKGFMPNNFVYNSLIRGFCNSGRLQEA 518

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             +  +M +   + + F    +I+ LC+ GR   AS V   M   GL P +V+YN+++ G
Sbjct: 519 LMLEREMARKGLLPDIFTTNIIINGLCKEGRMKSASDVFRNMHHTGLIPDIVTYNTLIDG 578

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK    +   +++ +    G+ P   TY + + GLC    + +A  +L+ ++S   V  
Sbjct: 579 YCKAFDTVSTDEVVNKMYATGWDPDITTYNIRLHGLCTGRKMSRAVMMLEELISAGVVPD 638

Query: 244 TRICNIYLRALCLIKNPTELLN----VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
           T   N  +  +C     T++L     V   +L+    P+V+T N +++ FCK G  E+ +
Sbjct: 639 TVTYNTVMNGVC-----TDVLERAMIVTAKLLKMAFVPNVVTANLLLSHFCKQGMPEKTI 693



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 99/419 (23%), Positives = 169/419 (40%), Gaps = 74/419 (17%)

Query: 158 ASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVE 217
           A  +V  MR+ GL PS  +   +   L + G     ++LL   I  G  P    +  ++ 
Sbjct: 98  ALEIVGRMREVGLRPSSSAITILFKLLLRIGDHGSVWKLLRGMIHQGPRPCNRNFNAVIL 157

Query: 218 GLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQP 277
           G C +  ++    +L  M   K        NI + A C      + L  + FM+   C P
Sbjct: 158 GFCRKGHVKVGESLLCVMQKFKCQPDVYAYNILINAYCTRGQTFDALGWMRFMIDNGCTP 217

Query: 278 DVITLNTVINGFCKMGRIEEALKVLNDMV-AGKFCAPDAVTFTTIIFGLLNVGRIQEALN 336
            ++T  TVIN FC  G + EA  + + M  AG    P+ V + T++ G +    I +A N
Sbjct: 218 SLVTFGTVINAFCNQGNMMEARNLFDGMKEAGHI--PNVVCYNTLMNGYVKARDIGQA-N 274

Query: 337 LLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 396
           +LY+ M  +  +P   T+N ++ G +R  R E+   +   +   G ++ S+ Y I + GL
Sbjct: 275 MLYEEMKSKAVAPDCTTFNILVAGHYRYGREEDRDRLLRDLSQSGSLSISSLYNICVSGL 334

Query: 397 CESNQLDEAKRFWDDI----VWPSNIHDNYVYAA-------------------------- 426
           C +  LDEA +F +D+    + P+ +  N + AA                          
Sbjct: 335 CWAGWLDEAMKFLEDMLEKGITPTVVAFNSIIAAYSRAGLEEKAYKAYRMMVKFGLFPSS 394

Query: 427 -----MIKGLCRSGKIHEAVHFLYELV--------------------------------- 448
                +I GL +  ++ EA   LYE++                                 
Sbjct: 395 LTCSSLIMGLSKLWRLQEARDLLYEMIVEGLPINKAAFTLLLDGYFRMGDVAGAYSLWNE 454

Query: 449 --DSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
               G+ P+ V ++  I+G   + +  EAY +  +M K G  P+   +  L +   N G
Sbjct: 455 MEGRGIHPDAVAFSAFINGLSIVGLVDEAYDVFLQMSKKGFMPNNFVYNSLIRGFCNSG 513



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 70/288 (24%), Positives = 120/288 (41%), Gaps = 35/288 (12%)

Query: 228 ARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQ--TQCQPDVITLNTV 285
           A+ V+ +++ +  VDR+R                    V+ FM +   + + D   L+T+
Sbjct: 45  AQDVVSWVIRRVGVDRSR-------------------EVVEFMWKRHAEFESDFSVLDTL 85

Query: 286 INGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQR 345
           + GF K+    EAL+++  M       P +   T +   LL +G       LL + M  +
Sbjct: 86  MRGFLKVEMGCEALEIVGRMREVGL-RPSSSAITILFKLLLRIGDHGSVWKLL-RGMIHQ 143

Query: 346 GYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA 405
           G  P    +NAV+ G  R   V+  + +   M       D   Y I+I+  C   Q    
Sbjct: 144 GPRPCNRNFNAVILGFCRKGHVKVGESLLCVMQKFKCQPDVYAYNILINAYCTRGQT--- 200

Query: 406 KRFWDDIVWPSNIHDN------YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCY 459
              +D + W   + DN        +  +I   C  G + EA +    + ++G  PN+VCY
Sbjct: 201 ---FDALGWMRFMIDNGCTPSLVTFGTVINAFCNQGNMMEARNLFDGMKEAGHIPNVVCY 257

Query: 460 NVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGND 507
           N +++G  K     +A  +  EM+   + PD  T+ IL   H   G +
Sbjct: 258 NTLMNGYVKARDIGQANMLYEEMKSKAVAPDCTTFNILVAGHYRYGRE 305


>gi|242041853|ref|XP_002468321.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
 gi|241922175|gb|EER95319.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
          Length = 794

 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 126/472 (26%), Positives = 225/472 (47%), Gaps = 8/472 (1%)

Query: 27  PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVL 86
           PN  ++  L+H +C  G +  A      M+  G+ P+ +TY+ L++   R   +  A  L
Sbjct: 208 PNHYTFNLLVHTHCSKGTLADALSTLSTMQGFGLSPDVVTYNTLLKAHCRKGMLGEARTL 267

Query: 87  MFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMI 146
           +     RMK+E  ++   A +  LV +  R G++ +   + E M       + +    + 
Sbjct: 268 L----ARMKKE-GIAPTRATYNTLVSAYARLGWIKQATNVVEAMTAFGFEPDLWTYNVLA 322

Query: 147 DSLCRSGRNHGASRVVYVMRKRGL-TPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY 205
             LC++G+   A ++   M    + +P +V+YN++V    K+     A  LLEE    G 
Sbjct: 323 AGLCQAGKVDEAFKLKDEMEHLSIVSPDVVTYNTLVDACFKYQRSSDALNLLEEMRDKGV 382

Query: 206 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 265
             S  T+ ++V+GLC E  LE+A   L+ M  +         N  + A C  +N  +   
Sbjct: 383 KSSLVTHNIVVKGLCREGQLEEALGRLKMMTEEGLAPDVITYNTLIDAYCKARNVAKAFV 442

Query: 266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 325
           ++  M+++  + D  TLNT++   CK  R EEA ++L       F  PD V++ T++   
Sbjct: 443 LMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEAEELLRSPPQRGFV-PDEVSYGTVMAAY 501

Query: 326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 385
               + + AL  L+  M +R  +P I TYN +++GL  + ++ EA +  N ++  G+V D
Sbjct: 502 FKENKPEPAL-YLWDEMSKRKLTPSIYTYNTLIKGLCTIGKLTEAIDKLNELMKKGLVPD 560

Query: 386 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY 445
            TTY I+I   C+   L++A +F + ++      D      ++ GLC  GK+ +A+    
Sbjct: 561 DTTYNIIIHAYCKEGDLEKAFQFHNKMLENYFKPDVVTCNTLMNGLCLHGKLEKAIKLFE 620

Query: 446 ELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
              + G   +++ YN +I   CK      A     +M   GL PDA T+ ++
Sbjct: 621 SWAEKGKKVDVITYNTLIQALCKDGDVDTALHFFADMEARGLQPDAFTYNVV 672



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 122/463 (26%), Positives = 213/463 (46%), Gaps = 8/463 (1%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C    +GEA  L   MK  G  P   +Y TL+  Y R G +  A  V + M   G  P+ 
Sbjct: 256 CRKGMLGEARTLLARMKKEGIAPTRATYNTLVSAYARLGWIKQATNVVEAMTAFGFEPDL 315

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
            TY+VL  G+ +   V+ A    FKL + M+    +S +   +  LVD+  +    ++  
Sbjct: 316 WTYNVLAAGLCQAGKVDEA----FKLKDEMEHLSIVSPDVVTYNTLVDACFKYQRSSDAL 371

Query: 125 RIAEDMPQGKSVNEEFACGHM-IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            + E+M + K V       ++ +  LCR G+   A   + +M + GL P +++YN+++  
Sbjct: 372 NLLEEM-RDKGVKSSLVTHNIVVKGLCREGQLEEALGRLKMMTEEGLAPDVITYNTLIDA 430

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK     +A+ L++E ++ G      T   L+  LC E   E+A ++L+    +  V  
Sbjct: 431 YCKARNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEAEELLRSPPQRGFVPD 490

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                  + A      P   L +   M + +  P + T NT+I G C +G++ EA+  LN
Sbjct: 491 EVSYGTVMAAYFKENKPEPALYLWDEMSKRKLTPSIYTYNTLIKGLCTIGKLTEAIDKLN 550

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           +++  K   PD  T+  II      G +++A    +  M +  + P +VT N ++ GL  
Sbjct: 551 ELMK-KGLVPDDTTYNIIIHAYCKEGDLEKAFQ-FHNKMLENYFKPDVVTCNTLMNGLCL 608

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
             ++E+A ++F      G   D  TY  +I  LC+   +D A  F+ D+       D + 
Sbjct: 609 HGKLEKAIKLFESWAEKGKKVDVITYNTLIQALCKDGDVDTALHFFADMEARGLQPDAFT 668

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466
           Y  ++  L  +G+  EA + L++L +SG       Y ++   A
Sbjct: 669 YNVVLSALSEAGRSEEAQNMLHKLDESGKLSERFSYPLIKSSA 711



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 114/429 (26%), Positives = 203/429 (47%), Gaps = 8/429 (1%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           R  +A  L  +M+ +G   ++V++  ++ G CR G+++ A      M   G+ P+ +TY+
Sbjct: 366 RSSDALNLLEEMRDKGVKSSLVTHNIVVKGLCREGQLEEALGRLKMMTEEGLAPDVITYN 425

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
            L+    + R+V +A VLM ++     + +  ++N      L+ +LC+E    E   +  
Sbjct: 426 TLIDAYCKARNVAKAFVLMDEMVRSGLKMDTFTLNT-----LLYNLCKEKRYEEAEELLR 480

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
             PQ   V +E + G ++ +  +  +   A  +   M KR LTPS+ +YN+++ GLC  G
Sbjct: 481 SPPQRGFVPDEVSYGTVMAAYFKENKPEPALYLWDEMSKRKLTPSIYTYNTLIKGLCTIG 540

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
               A   L E ++ G +P + TY +++   C E DLEKA +    ML          CN
Sbjct: 541 KLTEAIDKLNELMKKGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMLENYFKPDVVTCN 600

Query: 249 IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 308
             +  LCL     + + +     +   + DVIT NT+I   CK G ++ AL    DM A 
Sbjct: 601 TLMNGLCLHGKLEKAIKLFESWAEKGKKVDVITYNTLIQALCKDGDVDTALHFFADMEA- 659

Query: 309 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE 368
           +   PDA T+  ++  L   GR +EA N+L++ + + G      +Y  +      ++  +
Sbjct: 660 RGLQPDAFTYNVVLSALSEAGRSEEAQNMLHK-LDESGKLSERFSYPLIKSSAEEVKTGK 718

Query: 369 EAKEVFNCMLGIGVVA-DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAM 427
           + +   +C  G      D  +Y   +  LC   QL EAK   D+++      D+  Y  +
Sbjct: 719 DPEVKSDCESGGNAKGGDQESYNKSVKELCVGGQLKEAKAVLDEMMQKGMSVDSSTYITL 778

Query: 428 IKGLCRSGK 436
           ++GL +  K
Sbjct: 779 MEGLIKRQK 787



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 132/516 (25%), Positives = 233/516 (45%), Gaps = 55/516 (10%)

Query: 7   LSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVL-PNSL 65
           L  + +A  +   M + G  P++ +Y  L  G C+ G++D A+K+ DEM H  ++ P+ +
Sbjct: 293 LGWIKQATNVVEAMTAFGFEPDLWTYNVLAAGLCQAGKVDEAFKLKDEMEHLSIVSPDVV 352

Query: 66  TYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFAN--LVDSLCREGYVNEV 123
           TY+ LV    + +    A      L E M+   D  V ++   +  +V  LCREG + E 
Sbjct: 353 TYNTLVDACFKYQRSSDA----LNLLEEMR---DKGVKSSLVTHNIVVKGLCREGQLEEA 405

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
               + M +     +      +ID+ C++     A  ++  M + GL     + N++++ 
Sbjct: 406 LGRLKMMTEEGLAPDVITYNTLIDAYCKARNVAKAFVLMDEMVRSGLKMDTFTLNTLLYN 465

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LCK      A +LL    Q G++P E +Y  ++     E+  E A  +   M  +K    
Sbjct: 466 LCKEKRYEEAEELLRSPPQRGFVPDEVSYGTVMAAYFKENKPEPALYLWDEMSKRKLTPS 525

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               N  ++ LC I   TE ++ L  +++    PD  T N +I+ +CK G +E+A +  N
Sbjct: 526 IYTYNTLIKGLCTIGKLTEAIDKLNELMKKGLVPDDTTYNIIIHAYCKEGDLEKAFQFHN 585

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            M+   F  PD VT  T++ GL   G++++A+  L++   ++G    ++TYN +++ L +
Sbjct: 586 KMLENYF-KPDVVTCNTLMNGLCLHGKLEKAIK-LFESWAEKGKKVDVITYNTLIQALCK 643

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
              V+ A   F  M   G+  D+ TY +V+  L E+ + +EA+                 
Sbjct: 644 DGDVDTALHFFADMEARGLQPDAFTYNVVLSALSEAGRSEEAQN---------------- 687

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDS-------GVTPNIV---------------CYNV 461
              M+  L  SGK+ E   F Y L+ S       G  P +                 YN 
Sbjct: 688 ---MLHKLDESGKLSE--RFSYPLIKSSAEEVKTGKDPEVKSDCESGGNAKGGDQESYNK 742

Query: 462 VIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            +   C     +EA  +L EM + G++ D+ T+  L
Sbjct: 743 SVKELCVGGQLKEAKAVLDEMMQKGMSVDSSTYITL 778



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 102/399 (25%), Positives = 181/399 (45%), Gaps = 38/399 (9%)

Query: 100 LSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFAC-GHMIDSLCRSGRNHGA 158
           L  N+  F  LV + C +G + +       M QG  ++ +      ++ + CR G    A
Sbjct: 206 LHPNHYTFNLLVHTHCSKGTLADALSTLSTM-QGFGLSPDVVTYNTLLKAHCRKGMLGEA 264

Query: 159 SRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEG 218
             ++  M+K G+ P+  +YN++V    + G   +A  ++E    FG+ P   TY VL  G
Sbjct: 265 RTLLARMKKEGIAPTRATYNTLVSAYARLGWIKQATNVVEAMTAFGFEPDLWTYNVLAAG 324

Query: 219 LCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPD 278
           LC    +++A K                          +K+  E L+++         PD
Sbjct: 325 LCQAGKVDEAFK--------------------------LKDEMEHLSIV--------SPD 350

Query: 279 VITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLL 338
           V+T NT+++   K  R  +AL +L +M   K      VT   ++ GL   G+++EAL  L
Sbjct: 351 VVTYNTLVDACFKYQRSSDALNLLEEM-RDKGVKSSLVTHNIVVKGLCREGQLEEALGRL 409

Query: 339 YQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE 398
            ++M + G +P ++TYN ++    + R V +A  + + M+  G+  D+ T   ++  LC+
Sbjct: 410 -KMMTEEGLAPDVITYNTLIDAYCKARNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCK 468

Query: 399 SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVC 458
             + +EA+           + D   Y  ++    +  K   A++   E+    +TP+I  
Sbjct: 469 EKRYEEAEELLRSPPQRGFVPDEVSYGTVMAAYFKENKPEPALYLWDEMSKRKLTPSIYT 528

Query: 459 YNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           YN +I G C +    EA   L E+ K GL PD  T+ I+
Sbjct: 529 YNTLIKGLCTIGKLTEAIDKLNELMKKGLVPDDTTYNII 567



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 83/337 (24%), Positives = 157/337 (46%), Gaps = 21/337 (6%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R  EA +L      RG VP+ VSY T++  Y +  + + A  ++DEM    + P+
Sbjct: 466 LCKEKRYEEAEELLRSPPQRGFVPDEVSYGTVMAAYFKENKPEPALYLWDEMSKRKLTPS 525

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             TY+ L++G+     +  A   + KL E MK  + L  ++  +  ++ + C+EG + + 
Sbjct: 526 IYTYNTLIKGLCTIGKLTEA---IDKLNELMK--KGLVPDDTTYNIIIHAYCKEGDLEKA 580

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           F+    M +     +   C  +++ LC  G+   A ++     ++G    +++YN+++  
Sbjct: 581 FQFHNKMLENYFKPDVVTCNTLMNGLCLHGKLEKAIKLFESWAEKGKKVDVITYNTLIQA 640

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LCK G    A     +    G  P   TY V++  L      E+A    Q ML K D + 
Sbjct: 641 LCKDGDVDTALHFFADMEARGLQPDAFTYNVVLSALSEAGRSEEA----QNMLHKLD-ES 695

Query: 244 TRICNIYLRALCLIKNPTELLNV-LVFMLQTQCQP-------DVITLNTVINGFCKMGRI 295
            ++   +  +  LIK+  E +       +++ C+        D  + N  +   C  G++
Sbjct: 696 GKLSERF--SYPLIKSSAEEVKTGKDPEVKSDCESGGNAKGGDQESYNKSVKELCVGGQL 753

Query: 296 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQ 332
           +EA  VL++M+  K  + D+ T+ T++ GL+   + Q
Sbjct: 754 KEAKAVLDEMMQ-KGMSVDSSTYITLMEGLIKRQKRQ 789



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 90/221 (40%), Gaps = 43/221 (19%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M+ LC   ++ +A KLF     +G   +V++Y TLI   C+ G++D A   F +M   G+
Sbjct: 603 MNGLCLHGKLEKAIKLFESWAEKGKKVDVITYNTLIQALCKDGDVDTALHFFADMEARGL 662

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P++ TY                NV++  L E  + EE          N++  L   G +
Sbjct: 663 QPDAFTY----------------NVVLSALSEAGRSEE--------AQNMLHKLDESGKL 698

Query: 121 NEVFRIAEDMPQGKSVNEEFACGH--MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
           +E F      P  KS  EE   G    + S C SG N                    SYN
Sbjct: 699 SERF----SYPLIKSSAEEVKTGKDPEVKSDCESGGNAKGG-------------DQESYN 741

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGL 219
             V  LC  G    A  +L+E +Q G      TY  L+EGL
Sbjct: 742 KSVKELCVGGQLKEAKAVLDEMMQKGMSVDSSTYITLMEGL 782


>gi|357142605|ref|XP_003572629.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 543

 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 124/483 (25%), Positives = 223/483 (46%), Gaps = 51/483 (10%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           + +LC   RV +A ++   +++ G    +++Y T+++GYCR G +D A ++ D +     
Sbjct: 103 IKKLCADGRVADAERV---VEALGPSATIITYNTMVNGYCRAGNIDAARRMIDSVPF--- 156

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P++ TY+ L+R                                        +LC  G V
Sbjct: 157 APDTFTYNPLIR----------------------------------------ALCVRGCV 176

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +   + +DM              ++D+ C+      A  ++  MR +G  P +V+YN +
Sbjct: 177 LDALAVFDDMLHRGCSPSVVTYSILLDATCKESGYKQAVVLLDEMRSKGCEPDIVTYNVL 236

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++ +C  G    A ++L     +G  P   TY  +++ LC     E+A K+L  M S   
Sbjct: 237 INAMCSQGDVGEALKVLNSLPSYGCKPDAVTYTPVLKSLCSSERWEEADKLLTKMFSNDC 296

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                  N  + +LC          VL  M +  C PD+IT +++++G CK  R++EA+K
Sbjct: 297 APDEVTFNAVITSLCQKGFVGRATKVLAQMSEHGCTPDIITYSSIMDGLCKERRVDEAIK 356

Query: 301 VLNDMVA---GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           +L +++A    K C PD VTF TII  L   G    A+ ++ + M + G  P I TYN +
Sbjct: 357 LLKELLAEMVSKNCIPDQVTFNTIITSLCQKGLFDRAIKVVDE-MSEHGCIPDITTYNCI 415

Query: 358 LRG-LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416
           + G L +  + EEA ++ N M+  G+  D+TTY  +  GL   ++++ A   +  +    
Sbjct: 416 VDGFLCKSCKTEEALDLLNLMVSNGLCPDTTTYKSLAFGLSREDEMERAIGMFRRVQAMG 475

Query: 417 NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAY 476
              D  +Y A++ GLC+  +   A+ F   +V +G  P+   Y ++++G        EA 
Sbjct: 476 LSPDKMLYNAILLGLCKKWRTDLAIDFFAYMVSNGCMPDESTYIILVEGIAYEGFLEEAK 535

Query: 477 QIL 479
           ++L
Sbjct: 536 ELL 538



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 129/466 (27%), Positives = 215/466 (46%), Gaps = 16/466 (3%)

Query: 36  IHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMK 95
           + G  + GE+D A ++   +   G  P  +  ++L++ +     V  A        ER+ 
Sbjct: 68  LRGLVQRGELDGALRLVHSISGSGKDPAVIPCNILIKKLCADGRVADA--------ERVV 119

Query: 96  EEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRN 155
           E    S     +  +V+  CR G ++   R+ + +P      + F    +I +LC  G  
Sbjct: 120 EALGPSATIITYNTMVNGYCRAGNIDAARRMIDSVPFAP---DTFTYNPLIRALCVRGCV 176

Query: 156 HGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVL 215
             A  V   M  RG +PS+V+Y+ ++   CK  G  +A  LL+E    G  P   TY VL
Sbjct: 177 LDALAVFDDMLHRGCSPSVVTYSILLDATCKESGYKQAVVLLDEMRSKGCEPDIVTYNVL 236

Query: 216 VEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQC 275
           +  +C + D+ +A KVL  + S             L++LC  +   E   +L  M    C
Sbjct: 237 INAMCSQGDVGEALKVLNSLPSYGCKPDAVTYTPVLKSLCSSERWEEADKLLTKMFSNDC 296

Query: 276 QPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEAL 335
            PD +T N VI   C+ G +  A KVL  M +   C PD +T+++I+ GL    R+ EA+
Sbjct: 297 APDEVTFNAVITSLCQKGFVGRATKVLAQM-SEHGCTPDIITYSSIMDGLCKERRVDEAI 355

Query: 336 NLLYQVMPQ---RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIV 392
            LL +++ +   +   P  VT+N ++  L +    + A +V + M   G + D TTY  +
Sbjct: 356 KLLKELLAEMVSKNCIPDQVTFNTIITSLCQKGLFDRAIKVVDEMSEHGCIPDITTYNCI 415

Query: 393 IDG-LCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 451
           +DG LC+S + +EA    + +V      D   Y ++  GL R  ++  A+     +   G
Sbjct: 416 VDGFLCKSCKTEEALDLLNLMVSNGLCPDTTTYKSLAFGLSREDEMERAIGMFRRVQAMG 475

Query: 452 VTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           ++P+ + YN ++ G CK      A      M  NG  PD  T+ IL
Sbjct: 476 LSPDKMLYNAILLGLCKKWRTDLAIDFFAYMVSNGCMPDESTYIIL 521



 Score = 42.0 bits (97), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 3/88 (3%)

Query: 6   GLSRVGEAHK---LFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           GLSR  E  +   +F  +++ G  P+ + Y  ++ G C+    D+A   F  M   G +P
Sbjct: 454 GLSREDEMERAIGMFRRVQAMGLSPDKMLYNAILLGLCKKWRTDLAIDFFAYMVSNGCMP 513

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKL 90
           +  TY +LV G+     +E A  L+  L
Sbjct: 514 DESTYIILVEGIAYEGFLEEAKELLGNL 541


>gi|302758228|ref|XP_002962537.1| hypothetical protein SELMODRAFT_70281 [Selaginella moellendorffii]
 gi|300169398|gb|EFJ36000.1| hypothetical protein SELMODRAFT_70281 [Selaginella moellendorffii]
          Length = 439

 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 117/466 (25%), Positives = 230/466 (49%), Gaps = 45/466 (9%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R+GEA + +  M  R  VPN+     L+   C+ G+MD A  +F   R     P+
Sbjct: 13  LCKAGRLGEAVECYNQMLERHCVPNLRDINLLLASLCQAGKMDQAMAIF---RGIQCSPS 69

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +T ++L+ G    + +++A     +L+  M++   L      +  ++   C+   +++ 
Sbjct: 70  VITLNILINGFCELQLLDKA----LELFHEMEKNFALVPEATTYTAIIKCYCKMDRLDQA 125

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVM-RKRGLTPSLVSYNSIVH 182
            ++ E+     S  +  A   +    C++ R   A +++  M  K+   P +V++N I+H
Sbjct: 126 RQLLEESSCCSS--DVIAITSVARGFCKAQRVDEAYQLLLDMVEKKSAKPDIVAWNVIIH 183

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           G CK G    AY++LE  +  G +P+  TY  L++G C   +L +A ++ + +LS +D  
Sbjct: 184 GFCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDGFCKSGNLSEALQLFK-VLSSRD-- 240

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
                                            +P+V+T N +I+G CK  R+E A +++
Sbjct: 241 ------------------------------HHAEPNVVTFNALISGLCKADRLEHAFELV 270

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
             M A    A D  T+TT++ GL   GR  E ++ +++ M + G +P +VTY  ++    
Sbjct: 271 KQMKARDLRA-DTFTYTTLMDGLCKQGRTSE-VSRVFEEMLREGCNPSVVTYTTLVHAHC 328

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
           +   +++A++V   M+  G+  D TTY ++++GL E+ ++  A  F++ I+         
Sbjct: 329 KAGSLQDAQQVIRSMVAKGIPPDVTTYTVLLEGLFENGKVRTATEFFEKILRERCPPCAV 388

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACK 468
           VY+A+++G C++  + EAV +  E++D  + P+     ++++  CK
Sbjct: 389 VYSALVRGCCKAALVDEAVKYYVEMLDRRLAPDPATCKLLVEMLCK 434



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 118/442 (26%), Positives = 214/442 (48%), Gaps = 46/442 (10%)

Query: 103 NNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVV 162
           N   F+ L+  LC+ G + E       M +   V        ++ SLC++G+   A   +
Sbjct: 2   NRFTFSVLIAGLCKAGRLGEAVECYNQMLERHCVPNLRDINLLLASLCQAGKMDQA---M 58

Query: 163 YVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQ-FGYLPSEHTYKVLVEGLCG 221
            + R    +PS+++ N +++G C+     +A +L  E  + F  +P   TY  +++  C 
Sbjct: 59  AIFRGIQCSPSVITLNILINGFCELQLLDKALELFHEMEKNFALVPEATTYTAIIKCYCK 118

Query: 222 ESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQ-CQPDVI 280
              L++AR++L+   S    D   I ++  R  C  +   E   +L+ M++ +  +PD++
Sbjct: 119 MDRLDQARQLLEES-SCCSSDVIAITSVA-RGFCKAQRVDEAYQLLLDMVEKKSAKPDIV 176

Query: 281 TLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQ 340
             N +I+GFCK GR+ EA ++L  +V+   C P+AVT+TT+I G    G + EAL L ++
Sbjct: 177 AWNVIIHGFCKAGRVREAYEMLETLVSMG-CVPNAVTYTTLIDGFCKSGNLSEALQL-FK 234

Query: 341 VMPQRGY--SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE 398
           V+  R +   P +VT+NA++ GL +  R+E A E+   M    + AD+ TY  ++DGLC+
Sbjct: 235 VLSSRDHHAEPNVVTFNALISGLCKADRLEHAFELVKQMKARDLRADTFTYTTLMDGLCK 294

Query: 399 SNQLDEAKRFWDD----------IVWPSNIH-------------------------DNYV 423
             +  E  R +++          + + + +H                         D   
Sbjct: 295 QGRTSEVSRVFEEMLREGCNPSVVTYTTLVHAHCKAGSLQDAQQVIRSMVAKGIPPDVTT 354

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y  +++GL  +GK+  A  F  +++     P  V Y+ ++ G CK ++  EA +   EM 
Sbjct: 355 YTVLLEGLFENGKVRTATEFFEKILRERCPPCAVVYSALVRGCCKAALVDEAVKYYVEML 414

Query: 484 KNGLNPDAVTWRILDKLHGNRG 505
              L PD  T ++L ++   RG
Sbjct: 415 DRRLAPDPATCKLLVEMLCKRG 436



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 103/407 (25%), Positives = 201/407 (49%), Gaps = 16/407 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEM-RHCG 59
           +  LC   ++ +A  +F  ++     P+V++   LI+G+C    +D A ++F EM ++  
Sbjct: 45  LASLCQAGKMDQAMAIFRGIQCS---PSVITLNILINGFCELQLLDKALELFHEMEKNFA 101

Query: 60  VLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGY 119
           ++P + TY+ +++   +   +++A  L+       +E    S +  A  ++    C+   
Sbjct: 102 LVPEATTYTAIIKCYCKMDRLDQARQLL-------EESSCCSSDVIAITSVARGFCKAQR 154

Query: 120 VNEVFRIAEDMPQGKSVNEEF-ACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
           V+E +++  DM + KS   +  A   +I   C++GR   A  ++  +   G  P+ V+Y 
Sbjct: 155 VDEAYQLLLDMVEKKSAKPDIVAWNVIIHGFCKAGRVREAYEMLETLVSMGCVPNAVTYT 214

Query: 179 SIVHGLCKHGGCMRAYQLLE--EGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFML 236
           +++ G CK G    A QL +          P+  T+  L+ GLC    LE A ++++ M 
Sbjct: 215 TLIDGFCKSGNLSEALQLFKVLSSRDHHAEPNVVTFNALISGLCKADRLEHAFELVKQMK 274

Query: 237 SKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIE 296
           ++     T      +  LC     +E+  V   ML+  C P V+T  T+++  CK G ++
Sbjct: 275 ARDLRADTFTYTTLMDGLCKQGRTSEVSRVFEEMLREGCNPSVVTYTTLVHAHCKAGSLQ 334

Query: 297 EALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
           +A +V+  MVA K   PD  T+T ++ GL   G+++ A     +++ +R   P  V Y+A
Sbjct: 335 DAQQVIRSMVA-KGIPPDVTTYTVLLEGLFENGKVRTATEFFEKILRERC-PPCAVVYSA 392

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLD 403
           ++RG  +   V+EA + +  ML   +  D  T  ++++ LC+  + D
Sbjct: 393 LVRGCCKAALVDEAVKYYVEMLDRRLAPDPATCKLLVEMLCKRGRTD 439



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 153/337 (45%), Gaps = 42/337 (12%)

Query: 207 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 266
           P+  T+ VL+ GLC    L +A +    ML +  V   R  N+ L +LC      ++   
Sbjct: 1   PNRFTFSVLIAGLCKAGRLGEAVECYNQMLERHCVPNLRDINLLLASLC---QAGKMDQA 57

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF--- 323
           +      QC P VITLN +INGFC++  +++AL++ ++M       P+A T+T II    
Sbjct: 58  MAIFRGIQCSPSVITLNILINGFCELQLLDKALELFHEMEKNFALVPEATTYTAIIKCYC 117

Query: 324 ------------------------------GLLNVGRIQEALNLLYQVMPQRGYSPGIVT 353
                                         G     R+ EA  LL  ++ ++   P IV 
Sbjct: 118 KMDRLDQARQLLEESSCCSSDVIAITSVARGFCKAQRVDEAYQLLLDMVEKKSAKPDIVA 177

Query: 354 YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413
           +N ++ G  +  RV EA E+   ++ +G V ++ TY  +IDG C+S  L EA + +   V
Sbjct: 178 WNVIIHGFCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDGFCKSGNLSEALQLFK--V 235

Query: 414 WPSNIH----DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKL 469
             S  H    +   + A+I GLC++ ++  A   + ++    +  +   Y  ++DG CK 
Sbjct: 236 LSSRDHHAEPNVVTFNALISGLCKADRLEHAFELVKQMKARDLRADTFTYTTLMDGLCKQ 295

Query: 470 SMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
               E  ++  EM + G NP  VT+  L   H   G+
Sbjct: 296 GRTSEVSRVFEEMLREGCNPSVVTYTTLVHAHCKAGS 332


>gi|125548475|gb|EAY94297.1| hypothetical protein OsI_16066 [Oryza sativa Indica Group]
          Length = 602

 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 114/390 (29%), Positives = 194/390 (49%), Gaps = 9/390 (2%)

Query: 104 NAAFAN-LVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVV 162
           +AA AN LV  LCR G  ++  R+        +V    A G + D  CR+GR   A RVV
Sbjct: 102 DAALANRLVRDLCRRGRPDDAERVVGACGPAATV---VAYGALTDGYCRAGRLGDARRVV 158

Query: 163 YVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGE 222
             M    + P+  +YN ++H LC+ G    A  +L++ +  G  P   TY +L+E  C  
Sbjct: 159 GGMP---VQPNAYTYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKG 215

Query: 223 SDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITL 282
               +A +++  M ++         N+ +  +C   +  + L +L  +    C+P  +  
Sbjct: 216 RGYRQAMELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNY 275

Query: 283 NTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVM 342
           NTV+ G C   R  +A +++ +M+  + C P+  TF  +I+ L   G +Q+A+ LL + M
Sbjct: 276 NTVLKGLCSAERWGDADELVTEMLR-ENCPPNEATFNVVIYSLCRKGLLQQAIQLL-EKM 333

Query: 343 PQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQL 402
            + G +  IVTYNA++ GL   R V+ A  + + M   G   D  TY  ++ GLC + Q 
Sbjct: 334 SKHGCTANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAAQW 393

Query: 403 DEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVV 462
            +A+   D++     + DN  +  +I  LC+ G + +A+    ++ D G TPN + Y+ +
Sbjct: 394 VDAEELMDNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTI 453

Query: 463 IDGACKLSMKREAYQILREMRKNGLNPDAV 492
           I G  K +   +A ++  EM   G NPD +
Sbjct: 454 ISGLAKATKLDQALELFNEMGHKGFNPDKI 483



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 125/482 (25%), Positives = 230/482 (47%), Gaps = 54/482 (11%)

Query: 2   DQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVL 61
           D  C   R+G+A ++   M  +   PN  +Y  LIH  C  G++  A  V D+M   G  
Sbjct: 143 DGYCRAGRLGDARRVVGGMPVQ---PNAYTYNPLIHTLCERGQVRDALSVLDDMLCRGCA 199

Query: 62  PNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVN 121
           P+ +TY++L+    + R   +A     +L + M+ E   + NN  +  L+D +C EG V+
Sbjct: 200 PDVVTYNILLEATCKGRGYRQA----MELIDLMRAE-GCTPNNVTYNVLMDGMCGEGDVD 254

Query: 122 EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
           +   +  ++P             ++  LC + R   A  +V  M +    P+  ++N ++
Sbjct: 255 DALELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGDADELVTEMLRENCPPNEATFNVVI 314

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
           + LC+ G   +A QLLE+  + G   +  TY  ++ GLC + +++ A  +L  M S    
Sbjct: 315 YSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYG-- 372

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
                                            C+PD++T NT++ G C   +  +A ++
Sbjct: 373 ---------------------------------CKPDIVTYNTLLKGLCSAAQWVDAEEL 399

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
           +++M     C PD VTF T+I  L   G + +A+ +  Q MP +G +P  +TY+ ++ GL
Sbjct: 400 MDNMTQNG-CLPDNVTFNTLIGFLCQKGLMVDAIEVFKQ-MPDKGCTPNSITYSTIISGL 457

Query: 362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA----KRFWDDIVWPSN 417
            +  ++++A E+FN M   G   D   Y ++ + L + + ++EA    ++  D  + P  
Sbjct: 458 AKATKLDQALELFNEMGHKGFNPDKI-YQLLAECLNDDDTIEEAIQTVRKLQDSGISPHT 516

Query: 418 IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQ 477
           +    +Y A++ GLCR+GK   A+  +  +V SG  P+ + Y ++I+G        EA +
Sbjct: 517 V----LYNAILLGLCRNGKTEFAIDIMAYMVSSGCMPDDLTYVILIEGLAYEGYLNEARE 572

Query: 478 IL 479
           +L
Sbjct: 573 LL 574



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 130/471 (27%), Positives = 219/471 (46%), Gaps = 49/471 (10%)

Query: 70  LVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNA--------AFANLVDSLCREGYVN 121
           LV    R  D   AN L+  L  R + ++   V  A        A+  L D  CR G + 
Sbjct: 93  LVESSPRPPDAALANRLVRDLCRRGRPDDAERVVGACGPAATVVAYGALTDGYCRAGRLG 152

Query: 122 EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
           +  R+   MP   +    +    +I +LC  G+   A  V+  M  RG  P +V+YN ++
Sbjct: 153 DARRVVGGMPVQPNA---YTYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILL 209

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
              CK  G  +A +L++     G  P+  TY VL++G+CGE D++ A ++L+ + S    
Sbjct: 210 EATCKGRGYRQAMELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCK 269

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
             T   N  L+ LC  +   +   ++  ML+  C P+  T N VI   C+ G +++A+++
Sbjct: 270 PSTVNYNTVLKGLCSAERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQL 329

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
           L  M +   C  + VT+  II GL     +  A+ LL + M   G  P IVTYN +L+GL
Sbjct: 330 LEKM-SKHGCTANIVTYNAIINGLCEQRNVDGAMGLLSK-MKSYGCKPDIVTYNTLLKGL 387

Query: 362 FRLRRVEEAKEV---------------FNCMLGI--------------------GVVADS 386
               +  +A+E+               FN ++G                     G   +S
Sbjct: 388 CSAAQWVDAEELMDNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNS 447

Query: 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE 446
            TY+ +I GL ++ +LD+A   ++++      + + +Y  + + L     I EA+  + +
Sbjct: 448 ITYSTIISGLAKATKLDQALELFNEMGH-KGFNPDKIYQLLAECLNDDDTIEEAIQTVRK 506

Query: 447 LVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           L DSG++P+ V YN ++ G C+      A  I+  M  +G  PD +T+ IL
Sbjct: 507 LQDSGISPHTVLYNAILLGLCRNGKTEFAIDIMAYMVSSGCMPDDLTYVIL 557



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 101/408 (24%), Positives = 172/408 (42%), Gaps = 78/408 (19%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           MD +CG   V +A +L  ++ S G  P+ V+Y T++ G C       A ++  EM     
Sbjct: 244 MDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGDADELVTEMLRENC 303

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN  T++V++                                         SLCR+G +
Sbjct: 304 PPNEATFNVVIY----------------------------------------SLCRKGLL 323

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +  ++ E M +            +I+ LC      GA  ++  M+  G  P +V+YN++
Sbjct: 324 QQAIQLLEKMSKHGCTANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTL 383

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GLC     + A +L++   Q G LP   T+  L+  LC +  +  A +V + M  K  
Sbjct: 384 LKGLCSAAQWVDAEELMDNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKG- 442

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                             C P+ IT +T+I+G  K  ++++AL+
Sbjct: 443 ----------------------------------CTPNSITYSTIISGLAKATKLDQALE 468

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           + N+M    F  PD + +  +   L +   I+EA+  + ++    G SP  V YNA+L G
Sbjct: 469 LFNEMGHKGF-NPDKI-YQLLAECLNDDDTIEEAIQTVRKLQ-DSGISPHTVLYNAILLG 525

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRF 408
           L R  + E A ++   M+  G + D  TY I+I+GL     L+EA+  
Sbjct: 526 LCRNGKTEFAIDIMAYMVSSGCMPDDLTYVILIEGLAYEGYLNEAREL 573



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 116/224 (51%), Gaps = 2/224 (0%)

Query: 276 QPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEAL 335
           QP+  T N +I+  C+ G++ +AL VL+DM+  + CAPD VT+  ++         ++A+
Sbjct: 164 QPNAYTYNPLIHTLCERGQVRDALSVLDDMLC-RGCAPDVVTYNILLEATCKGRGYRQAM 222

Query: 336 NLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG 395
            L+  +M   G +P  VTYN ++ G+     V++A E+   +   G    +  Y  V+ G
Sbjct: 223 ELI-DLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKG 281

Query: 396 LCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN 455
           LC + +  +A     +++  +   +   +  +I  LCR G + +A+  L ++   G T N
Sbjct: 282 LCSAERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTAN 341

Query: 456 IVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
           IV YN +I+G C+      A  +L +M+  G  PD VT+  L K
Sbjct: 342 IVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLK 385



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 119/241 (49%), Gaps = 7/241 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC    V  A  L   MKS G  P++V+Y TL+ G C   +   A ++ D M   G 
Sbjct: 349 INGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAAQWVDAEELMDNMTQNGC 408

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           LP+++T++ L+ G L  + +    + +FK       ++  + N+  ++ ++  L +   +
Sbjct: 409 LPDNVTFNTLI-GFLCQKGLMVDAIEVFK----QMPDKGCTPNSITYSTIISGLAKATKL 463

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           ++   +  +M   K  N +     + + L        A + V  ++  G++P  V YN+I
Sbjct: 464 DQALELFNEMGH-KGFNPDKIYQLLAECLNDDDTIEEAIQTVRKLQDSGISPHTVLYNAI 522

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GLC++G    A  ++   +  G +P + TY +L+EGL  E  L +AR++L   L  +D
Sbjct: 523 LLGLCRNGKTEFAIDIMAYMVSSGCMPDDLTYVILIEGLAYEGYLNEARELL-IKLCSRD 581

Query: 241 V 241
           V
Sbjct: 582 V 582



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/249 (24%), Positives = 108/249 (43%), Gaps = 11/249 (4%)

Query: 251 LRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKF 310
           LR+      PT  L       Q Q    ++  +  ++     G ++ AL+    +V    
Sbjct: 43  LRSSGAKPPPTPRLESPTTRQQQQAPRRLLGSDRRLSALVHRGDLDAALR----LVESSP 98

Query: 311 CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEA 370
             PDA     ++  L   GR  +A     +V+   G +  +V Y A+  G  R  R+ +A
Sbjct: 99  RPPDAALANRLVRDLCRRGRPDDA----ERVVGACGPAATVVAYGALTDGYCRAGRLGDA 154

Query: 371 KEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKG 430
           + V     G+ V  ++ TY  +I  LCE  Q+ +A    DD++      D   Y  +++ 
Sbjct: 155 RRVVG---GMPVQPNAYTYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEA 211

Query: 431 LCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD 490
            C+     +A+  +  +   G TPN V YNV++DG C      +A ++LR +  +G  P 
Sbjct: 212 TCKGRGYRQAMELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPS 271

Query: 491 AVTWRILDK 499
            V +  + K
Sbjct: 272 TVNYNTVLK 280


>gi|357134934|ref|XP_003569069.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Brachypodium distachyon]
          Length = 642

 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 144/534 (26%), Positives = 229/534 (42%), Gaps = 52/534 (9%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGH-----VPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHC 58
           +C  +R G A +         H      P V  Y  L+    R   +     V+D MR  
Sbjct: 97  ICAFARAGAADRALKTFYRARHDLGCAAPTVRVYNHLLDALLRENLVAAVVPVYDNMRKA 156

Query: 59  GVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREG 118
           GV PN  TY++L++ + +   V  A  ++ ++  +    +++S        ++ +LC+  
Sbjct: 157 GVEPNVYTYNLLIKALCQNDRVGAARRMLDEMARKGCRPDEVS-----HTTIISALCKLD 211

Query: 119 YVNEVFRI-AEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
            ++E   I AE  P G S N       ++ +LC   R      VV  M  RGL P  V+Y
Sbjct: 212 RLDEARGILAEMTPVGASYNA------VVHALCGQFRMREVFLVVDEMVHRGLRPDTVAY 265

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
            SIV   CK      A  +L   +  G +P+  T+ VLV+G   +  +  A  +  +M++
Sbjct: 266 TSIVGAFCKARELRMACAILARMVTEGCVPNVQTFTVLVKGFFDDGKVHDALGMWNWMVA 325

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
           +     T   N+ +R LC I +    L V   M ++ C PDV T +T+I+GF K G ++ 
Sbjct: 326 EGWAPSTISYNVLIRGLCHIGDLKRALFVFSCMGKSDCLPDVRTYSTLIDGFSKAGDLDV 385

Query: 298 ALKVLNDMV-AG---------------------------------KFCAPDAVTFTTIIF 323
           A+ + NDM  AG                                 + C P+ +TF T+I 
Sbjct: 386 AMSIWNDMTNAGCKPNVVVYTNMVDVLCKKVMFDQAENLIDKMSLENCPPNTLTFNTLIR 445

Query: 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 383
            L ++GR   ALN+ +  M + G  P   TYN +L GLFR    E+A  +   ML  G  
Sbjct: 446 SLCDLGRAGRALNVFHG-MRRYGCPPNDRTYNELLHGLFREGNCEDALRMLTEMLNHGFE 504

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
               +Y   I GLC+   + EA      ++      D + + A+I   C+ G +  A   
Sbjct: 505 LSLVSYNTTISGLCQMRMIKEAMILLGRMIIQGIQPDAFTFNAIIHAYCKEGNVRAAAWM 564

Query: 444 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           L  +       NIV Y  ++ G C      +A   L +M   G+ P+  TW +L
Sbjct: 565 LGRMDAVNCPRNIVAYTSLMSGLCSQHKLDDAMVYLLKMLYEGICPNEATWNVL 618



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 121/527 (22%), Positives = 220/527 (41%), Gaps = 52/527 (9%)

Query: 21  KSRGHVPNV-----VSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVL 75
           +SR   PN       ++   +      G++D       EMR  GV          +    
Sbjct: 42  RSRSPAPNAGEALARAHEATVRRLAAAGDLDGVQYTLQEMRLRGVACPEGALVAAICAFA 101

Query: 76  RTRDVERANVLMFKLWERMKEEEDLSVNNA-AFANLVDSLCREGYVNEVFRIAEDMPQGK 134
           R    +RA     K + R + +   +      + +L+D+L RE  V  V  + ++M +  
Sbjct: 102 RAGAADRA----LKTFYRARHDLGCAAPTVRVYNHLLDALLRENLVAAVVPVYDNMRKAG 157

Query: 135 SVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAY 194
                +    +I +LC++ R   A R++  M ++G  P  VS+ +I+  LCK      A 
Sbjct: 158 VEPNVYTYNLLIKALCQNDRVGAARRMLDEMARKGCRPDEVSHTTIISALCKLDRLDEAR 217

Query: 195 QLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRAL 254
            +L E       P   +Y  +V  LCG+  + +   V+  M+ +     T      + A 
Sbjct: 218 GILAE-----MTPVGASYNAVVHALCGQFRMREVFLVVDEMVHRGLRPDTVAYTSIVGAF 272

Query: 255 CLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPD 314
           C  +       +L  M+   C P+V T   ++ GF   G++ +AL + N MVA  + AP 
Sbjct: 273 CKARELRMACAILARMVTEGCVPNVQTFTVLVKGFFDDGKVHDALGMWNWMVAEGW-APS 331

Query: 315 AVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVF 374
            +++  +I GL ++G ++ AL  ++  M +    P + TY+ ++ G  +   ++ A  ++
Sbjct: 332 TISYNVLIRGLCHIGDLKRAL-FVFSCMGKSDCLPDVRTYSTLIDGFSKAGDLDVAMSIW 390

Query: 375 NCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVW---PSNI------------- 418
           N M   G   +   Y  ++D LC+    D+A+   D +     P N              
Sbjct: 391 NDMTNAGCKPNVVVYTNMVDVLCKKVMFDQAENLIDKMSLENCPPNTLTFNTLIRSLCDL 450

Query: 419 -------------------HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCY 459
                               ++  Y  ++ GL R G   +A+  L E+++ G   ++V Y
Sbjct: 451 GRAGRALNVFHGMRRYGCPPNDRTYNELLHGLFREGNCEDALRMLTEMLNHGFELSLVSY 510

Query: 460 NVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           N  I G C++ M +EA  +L  M   G+ PDA T+  +   +   GN
Sbjct: 511 NTTISGLCQMRMIKEAMILLGRMIIQGIQPDAFTFNAIIHAYCKEGN 557



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 94/219 (42%), Gaps = 5/219 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC      +A  L   M      PN +++ TLI   C  G    A  VF  MR  G 
Sbjct: 409 VDVLCKKVMFDQAENLIDKMSLENCPPNTLTFNTLIRSLCDLGRAGRALNVFHGMRRYGC 468

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN  TY+ L+ G+ R  + E A   +  L E +    +LS+   ++   +  LC+   +
Sbjct: 469 PPNDRTYNELLHGLFREGNCEDA---LRMLTEMLNHGFELSL--VSYNTTISGLCQMRMI 523

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E   +   M       + F    +I + C+ G    A+ ++  M       ++V+Y S+
Sbjct: 524 KEAMILLGRMIIQGIQPDAFTFNAIIHAYCKEGNVRAAAWMLGRMDAVNCPRNIVAYTSL 583

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGL 219
           + GLC       A   L + +  G  P+E T+ VLV G+
Sbjct: 584 MSGLCSQHKLDDAMVYLLKMLYEGICPNEATWNVLVRGI 622


>gi|449523421|ref|XP_004168722.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 124/471 (26%), Positives = 220/471 (46%), Gaps = 13/471 (2%)

Query: 30  VSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVL--- 86
           + +  LI   C     D A++ F  M+  GVLP   T + L+   L+    E A VL   
Sbjct: 152 IVFDYLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYAE 211

Query: 87  MFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMI 146
           MF+L  R+K       +   F  +++ LC+EG + +       M              ++
Sbjct: 212 MFRL--RIKS------SVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIV 263

Query: 147 DSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL 206
              C SGR   A  ++  M+++ + P   +Y S++ G+CK G    A ++ EE +Q G  
Sbjct: 264 HGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLR 323

Query: 207 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 266
           PS   Y  L++G C + +L+ A      ML K         N  + AL + +   E   +
Sbjct: 324 PSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECM 383

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
           +  + +    PD IT N +ING+C+    ++A  + ++M+A     P   T+T+++  L 
Sbjct: 384 IKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGI-KPTKKTYTSLLHVLS 442

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
              R++EA +L  ++  + G  P  + +NA++ G      V+ A E+   M  + V  D 
Sbjct: 443 KKNRMKEADDLFKKITSE-GVLPDAIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDE 501

Query: 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE 446
            T+  ++ G C   +++EA+  +D++       D+  +  +I G  R G I +A     E
Sbjct: 502 VTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNE 561

Query: 447 LVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           ++D+G  P ++ YN ++ G CK      A ++L+EM   G+ PD  T+  L
Sbjct: 562 MLDTGFNPTVLTYNALVQGLCKNQEGDLAEELLKEMVSKGMTPDDTTYFTL 612



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 103/403 (25%), Positives = 213/403 (52%), Gaps = 7/403 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   ++ +A      M++ G  PN+V+Y T++HGYC +G ++ A  +   M+   + P+
Sbjct: 231 LCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPD 290

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           S TY  L+ G+ +   +E A+    K++E M  ++ L  +   +  L+D  C +G ++  
Sbjct: 291 SFTYGSLISGMCKQGRLEEAS----KIFEEMV-QKGLRPSAVIYNTLIDGFCNKGNLDMA 345

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
               ++M +            +I +L    R   A  ++  ++++G++P  ++YN +++G
Sbjct: 346 SAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILING 405

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            C+     +A+ L +E +  G  P++ TY  L+  L  ++ +++A  + + + S+  +  
Sbjct: 406 YCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPD 465

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
             + N  +   C   N      +L  M + +  PD +T NT++ G C+ G++EEA ++ +
Sbjct: 466 AIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFD 525

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           +M   +   PD ++F T+I G    G I++A  +  +++   G++P ++TYNA+++GL +
Sbjct: 526 EM-KRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEML-DTGFNPTVLTYNALVQGLCK 583

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
            +  + A+E+   M+  G+  D TTY  +I+G+ + N  DE K
Sbjct: 584 NQEGDLAEELLKEMVSKGMTPDDTTYFTLIEGIAKVNIPDENK 626



 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 112/470 (23%), Positives = 221/470 (47%), Gaps = 7/470 (1%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C ++R  EA + F+ MK +G +P + +  +L+  + +    + A+ ++ EM    +  + 
Sbjct: 162 CDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYAEMFRLRIKSSV 221

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
            T+++++  + +   +++A   +  +     E   +  N   +  +V   C  G V    
Sbjct: 222 YTFNIMINVLCKEGKLKKAKDFVGHM-----ETSGVKPNIVTYNTIVHGYCSSGRVEAAD 276

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
            I   M + K   + F  G +I  +C+ GR   AS++   M ++GL PS V YN+++ G 
Sbjct: 277 AILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGF 336

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
           C  G    A    +E ++ G  P+  TY  L+  L  E   ++A  +++ +  K      
Sbjct: 337 CNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDA 396

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
              NI +   C   N  +   +   ML +  +P   T  ++++   K  R++EA  +   
Sbjct: 397 ITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKK 456

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
            +  +   PDA+ F  +I G  +   ++ A  LL + M +    P  VT+N +++G  R 
Sbjct: 457 -ITSEGVLPDAIMFNALIDGHCSNSNVKGAFELL-KDMDRMKVPPDEVTFNTIMQGHCRE 514

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY 424
            +VEEA+E+F+ M   G+  D  ++  +I G      + +A R  ++++          Y
Sbjct: 515 GKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTY 574

Query: 425 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKRE 474
            A+++GLC++ +   A   L E+V  G+TP+   Y  +I+G  K+++  E
Sbjct: 575 NALVQGLCKNQEGDLAEELLKEMVSKGMTPDDTTYFTLIEGIAKVNIPDE 624



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/334 (24%), Positives = 156/334 (46%), Gaps = 8/334 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           +C   R+ EA K+F +M  +G  P+ V Y TLI G+C  G +D+A    DEM   G+ P 
Sbjct: 301 MCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPT 360

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             TY+ L+  +   +  + A  ++ ++     +E+ +S +   +  L++  CR     + 
Sbjct: 361 MSTYNSLIHALFMEQRTDEAECMIKEI-----QEKGISPDAITYNILINGYCRCANAKKA 415

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           F + ++M        +     ++  L +  R   A  +   +   G+ P  + +N+++ G
Sbjct: 416 FLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDAIMFNALIDG 475

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            C +     A++LL++  +    P E T+  +++G C E  +E+AR++   M  ++ +  
Sbjct: 476 HCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEM-KRRGIKP 534

Query: 244 TRIC-NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
             I  N  +       +  +   V   ML T   P V+T N ++ G CK    + A ++L
Sbjct: 535 DHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGDLAEELL 594

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALN 336
            +MV+ K   PD  T+ T+I G+  V    E  N
Sbjct: 595 KEMVS-KGMTPDDTTYFTLIEGIAKVNIPDENKN 627



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/367 (23%), Positives = 164/367 (44%), Gaps = 20/367 (5%)

Query: 144 HMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI-VHGLCK---------HGGCMRA 193
           H ++   RS + H   +V     +  LTPSL+S   + +H   +         H     A
Sbjct: 43  HFLEQSARSSQWHFIKQV-----ESSLTPSLISQTLLNLHESPQVVLDFLNHFHHKLSDA 97

Query: 194 YQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD---VDRTRICNIY 250
             L    +    LPS      L+    G       R++ +F+ + +D      + + +  
Sbjct: 98  RTLCLAIVIVARLPSPKPALHLLRQALGGGTTNSIREIFEFLAASRDRLGFKSSIVFDYL 157

Query: 251 LRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKF 310
           +++ C +    E       M +    P + T N++++ F K+ R E A  +  +M   + 
Sbjct: 158 IKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYAEMFRLRI 217

Query: 311 CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEA 370
            +    TF  +I  L   G++++A + +   M   G  P IVTYN ++ G     RVE A
Sbjct: 218 KS-SVYTFNIMINVLCKEGKLKKAKDFVGH-METSGVKPNIVTYNTIVHGYCSSGRVEAA 275

Query: 371 KEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKG 430
             +   M    +  DS TY  +I G+C+  +L+EA + ++++V         +Y  +I G
Sbjct: 276 DAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDG 335

Query: 431 LCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD 490
            C  G +  A  +  E++  G++P +  YN +I          EA  +++E+++ G++PD
Sbjct: 336 FCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPD 395

Query: 491 AVTWRIL 497
           A+T+ IL
Sbjct: 396 AITYNIL 402



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 39/186 (20%), Positives = 77/186 (41%), Gaps = 40/186 (21%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C  S V  A +L  DM      P+ V++ T++ G+CR G+++ A ++FDEM+  G+
Sbjct: 473 IDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGI 532

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ ++++ L+ G                                          R G +
Sbjct: 533 KPDHISFNTLISGY----------------------------------------SRRGDI 552

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            + FR+  +M              ++  LC++     A  ++  M  +G+TP   +Y ++
Sbjct: 553 KDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGDLAEELLKEMVSKGMTPDDTTYFTL 612

Query: 181 VHGLCK 186
           + G+ K
Sbjct: 613 IEGIAK 618


>gi|224056475|ref|XP_002298874.1| predicted protein [Populus trichocarpa]
 gi|222846132|gb|EEE83679.1| predicted protein [Populus trichocarpa]
          Length = 948

 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 131/507 (25%), Positives = 245/507 (48%), Gaps = 18/507 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC  +R  + + L   M+ R   PN  +Y TLI+G  +  ++  A +VF+EM    +
Sbjct: 52  IDDLCKNNRSAKGYLLLKKMRKRMIAPNEFTYNTLINGLMKERKIGGATRVFNEMLMLNL 111

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +TY++L+ G     + E+A     +L + M E + L  +   +  L+  L +    
Sbjct: 112 SPNRVTYNILIDGHCDCGNFEQA----LRLLDVM-EAKGLRPDEVNYGALLSGLSKLAKF 166

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +    + E +     V    A   MID LC+ G    + +++ +M K G +P +++++ +
Sbjct: 167 DIAKSLMERIRMSGMVVGYRAYTAMIDGLCKHGLLDESLQLLDMMFKDGASPDIITFSVL 226

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKA-RKVLQFMLSKK 239
           ++G CK G    A +++ +  + G  P+   Y  L+   C + D+ +A R       +  
Sbjct: 227 INGFCKAGKIKNAKEVICKMFKAGLAPNYVIYATLIYNSCKKGDITEAFRNYATMTRTGH 286

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
           DVD   ICN+ + +LC      E  + +  M      P+ IT + +ING+  +G   +A 
Sbjct: 287 DVDYF-ICNVLISSLCRAGRVAEAEDFMRHMSTIDLAPNSITFDCIINGYGILGDALKAF 345

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIV---TYNA 356
            + ++M+    C P   T+ +++ GL   G ++EA  LLY++     + P  V    YN 
Sbjct: 346 SMFDEMIKLGHC-PSHFTYGSLLKGLCKGGNLREAKKLLYKLH----HIPAAVDTNIYNT 400

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416
           +L    +  ++ +A  +F  M+   V+ DS TYAI++ GL    ++  A  F++  +   
Sbjct: 401 ILSETCKRGKLSDAVALFGEMVQFNVLPDSHTYAIILAGLSRKGKMVPALLFFEKALARG 460

Query: 417 NIHDNYV-YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREA 475
            +  N V Y ++  GL + G+ + A +   E+   G+ P+ +  N V+DG  ++    + 
Sbjct: 461 TLSPNKVMYTSLFDGLFKVGQSNAASYIYEEMEHKGINPDTIAINAVLDGYSRMGKMEKV 520

Query: 476 YQILREMRKNGLNPDAVTWRILDKLHG 502
            ++  +M+   L P   T+ IL  LHG
Sbjct: 521 EKLFIKMQSGSLTPSLATYNIL--LHG 545



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 126/490 (25%), Positives = 223/490 (45%), Gaps = 8/490 (1%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C   R   A  L   M+S+G   +V +Y  LI   C+       Y +  +MR   + PN 
Sbjct: 21  CKKGRYKAASDLIDRMESKGIEADVCTYNMLIDDLCKNNRSAKGYLLLKKMRKRMIAPNE 80

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
            TY+ L+ G+++ R +  A  +  ++        +LS N   +  L+D  C  G   +  
Sbjct: 81  FTYNTLINGLMKERKIGGATRVFNEMLML-----NLSPNRVTYNILIDGHCDCGNFEQAL 135

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
           R+ + M       +E   G ++  L +  +   A  ++  +R  G+     +Y +++ GL
Sbjct: 136 RLLDVMEAKGLRPDEVNYGALLSGLSKLAKFDIAKSLMERIRMSGMVVGYRAYTAMIDGL 195

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
           CKHG    + QLL+   + G  P   T+ VL+ G C    ++ A++V+  M         
Sbjct: 196 CKHGLLDESLQLLDMMFKDGASPDIITFSVLINGFCKAGKIKNAKEVICKMFKAGLAPNY 255

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
            I    +   C   + TE       M +T    D    N +I+  C+ GR+ EA   +  
Sbjct: 256 VIYATLIYNSCKKGDITEAFRNYATMTRTGHDVDYFICNVLISSLCRAGRVAEAEDFMRH 315

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
           M      AP+++TF  II G   +G   +A + ++  M + G+ P   TY ++L+GL + 
Sbjct: 316 MSTIDL-APNSITFDCIINGYGILGDALKAFS-MFDEMIKLGHCPSHFTYGSLLKGLCKG 373

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY 424
             + EAK++   +  I    D+  Y  ++   C+  +L +A   + ++V  + + D++ Y
Sbjct: 374 GNLREAKKLLYKLHHIPAAVDTNIYNTILSETCKRGKLSDAVALFGEMVQFNVLPDSHTY 433

Query: 425 AAMIKGLCRSGKIHEAVHFLYELVDSG-VTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           A ++ GL R GK+  A+ F  + +  G ++PN V Y  + DG  K+     A  I  EM 
Sbjct: 434 AIILAGLSRKGKMVPALLFFEKALARGTLSPNKVMYTSLFDGLFKVGQSNAASYIYEEME 493

Query: 484 KNGLNPDAVT 493
             G+NPD + 
Sbjct: 494 HKGINPDTIA 503



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 123/480 (25%), Positives = 214/480 (44%), Gaps = 46/480 (9%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M+  G+VP +V+Y T+++  C+ G    A  + D M   G+  +  TY++L+        
Sbjct: 1   MEGSGYVPTIVTYNTILNWCCKKGRYKAASDLIDRMESKGIEADVCTYNMLI-------- 52

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
                                           D LC+     + + + + M +      E
Sbjct: 53  --------------------------------DDLCKNNRSAKGYLLLKKMRKRMIAPNE 80

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
           F    +I+ L +  +  GA+RV   M    L+P+ V+YN ++ G C  G   +A +LL+ 
Sbjct: 81  FTYNTLINGLMKERKIGGATRVFNEMLMLNLSPNRVTYNILIDGHCDCGNFEQALRLLDV 140

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
               G  P E  Y  L+ GL   +  + A+ +++ +     V   R     +  LC    
Sbjct: 141 MEAKGLRPDEVNYGALLSGLSKLAKFDIAKSLMERIRMSGMVVGYRAYTAMIDGLCKHGL 200

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
             E L +L  M +    PD+IT + +INGFCK G+I+ A +V+  M      AP+ V + 
Sbjct: 201 LDESLQLLDMMFKDGASPDIITFSVLINGFCKAGKIKNAKEVICKMFKAGL-APNYVIYA 259

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
           T+I+     G I EA    Y  M + G+       N ++  L R  RV EA++    M  
Sbjct: 260 TLIYNSCKKGDITEAFR-NYATMTRTGHDVDYFICNVLISSLCRAGRVAEAEDFMRHMST 318

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
           I +  +S T+  +I+G        +A   +D+++   +   ++ Y +++KGLC+ G + E
Sbjct: 319 IDLAPNSITFDCIINGYGILGDALKAFSMFDEMIKLGHCPSHFTYGSLLKGLCKGGNLRE 378

Query: 440 AVHFLYEL--VDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           A   LY+L  + + V  NI  YN ++   CK     +A  +  EM +  + PD+ T+ I+
Sbjct: 379 AKKLLYKLHHIPAAVDTNI--YNTILSETCKRGKLSDAVALFGEMVQFNVLPDSHTYAII 436



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 126/508 (24%), Positives = 230/508 (45%), Gaps = 52/508 (10%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVS---YTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           LC    + EA KL + +    H+P  V    Y T++   C+ G++  A  +F EM    V
Sbjct: 370 LCKGGNLREAKKLLYKLH---HIPAAVDTNIYNTILSETCKRGKLSDAVALFGEMVQFNV 426

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           LP+S TY++++ G+  +R  +    L+F  +E+      LS N   + +L D L + G  
Sbjct: 427 LPDSHTYAIILAGL--SRKGKMVPALLF--FEKALARGTLSPNKVMYTSLFDGLFKVGQS 482

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           N    I E+M       +  A   ++D   R G+     ++   M+   LTPSL +YN +
Sbjct: 483 NAASYIYEEMEHKGINPDTIAINAVLDGYSRMGKMEKVEKLFIKMQSGSLTPSLATYNIL 542

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +HG  K    ++  +      + G  P + T   ++ GLC    L+   K+L+ M+ +  
Sbjct: 543 LHGYSKKKDLLKCSKFYNIMTRMGISPDKLTCHSIILGLCKSGMLDVGFKMLKKMIME-- 600

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                   + LV         D +TLN +I   C+  ++ +A  
Sbjct: 601 ------------------------DTLV---------DQLTLNMLITNSCETDKMGKAFD 627

Query: 301 VLN--DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
           +LN  +++      PD  T+  I  GL     ++E+ +LL   M +RG +P    Y +++
Sbjct: 628 LLNIKNLLG---IIPDVNTYNAIFTGLNRASALRES-HLLLHDMLERGITPTSTQYISLI 683

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
            G+ R+  ++ A  + + M  IGV +     + ++ GL +  +++EA    D ++    I
Sbjct: 684 NGMCRMGDIQGAFRLKDEMEAIGVSSWDVAESAMVRGLAQCGKVEEAMLVLDCMLQKRLI 743

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI 478
                +  ++  LC+  K+ EA+    ++   GV  ++V YNV+I G C       A+ +
Sbjct: 744 PTVATFTTLMHMLCKKAKLSEALKLRGKMALYGVKLDVVAYNVLISGLCADGDALAAFNL 803

Query: 479 LREMRKNGLNPDAVTW-RILDKLHGNRG 505
             EM++ GL P+  T+  ++D +  N G
Sbjct: 804 YEEMKERGLWPNTTTYCTLIDAISTNEG 831



 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 122/498 (24%), Positives = 218/498 (43%), Gaps = 8/498 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +  LC   RV EA      M +    PN +++  +I+GY   G+   A+ +FDEM   G 
Sbjct: 297 ISSLCRAGRVAEAEDFMRHMSTIDLAPNSITFDCIINGYGILGDALKAFSMFDEMIKLGH 356

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+  TY  L++G+ +  ++  A  L++KL          +V+   +  ++   C+ G +
Sbjct: 357 CPSHFTYGSLLKGLCKGGNLREAKKLLYKL-----HHIPAAVDTNIYNTILSETCKRGKL 411

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRG-LTPSLVSYNS 179
           ++   +  +M Q   + +      ++  L R G+   A         RG L+P+ V Y S
Sbjct: 412 SDAVALFGEMVQFNVLPDSHTYAIILAGLSRKGKMVPALLFFEKALARGTLSPNKVMYTS 471

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           +  GL K G    A  + EE    G  P       +++G      +EK  K+   M S  
Sbjct: 472 LFDGLFKVGQSNAASYIYEEMEHKGINPDTIAINAVLDGYSRMGKMEKVEKLFIKMQSGS 531

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                   NI L      K+  +       M +    PD +T +++I G CK G ++   
Sbjct: 532 LTPSLATYNILLHGYSKKKDLLKCSKFYNIMTRMGISPDKLTCHSIILGLCKSGMLDVGF 591

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           K+L  M+       D +T   +I       ++ +A +LL  +    G  P + TYNA+  
Sbjct: 592 KMLKKMIMEDTLV-DQLTLNMLITNSCETDKMGKAFDLL-NIKNLLGIIPDVNTYNAIFT 649

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
           GL R   + E+  + + ML  G+   ST Y  +I+G+C    +  A R  D++       
Sbjct: 650 GLNRASALRESHLLLHDMLERGITPTSTQYISLINGMCRMGDIQGAFRLKDEMEAIGVSS 709

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
            +   +AM++GL + GK+ EA+  L  ++   + P +  +  ++   CK +   EA ++ 
Sbjct: 710 WDVAESAMVRGLAQCGKVEEAMLVLDCMLQKRLIPTVATFTTLMHMLCKKAKLSEALKLR 769

Query: 480 REMRKNGLNPDAVTWRIL 497
            +M   G+  D V + +L
Sbjct: 770 GKMALYGVKLDVVAYNVL 787



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 93/351 (26%), Positives = 168/351 (47%), Gaps = 4/351 (1%)

Query: 150 CRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSE 209
           C+ GR   AS ++  M  +G+   + +YN ++  LCK+    + Y LL++  +    P+E
Sbjct: 21  CKKGRYKAASDLIDRMESKGIEADVCTYNMLIDDLCKNNRSAKGYLLLKKMRKRMIAPNE 80

Query: 210 HTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVF 269
            TY  L+ GL  E  +  A +V   ML           NI +   C   N  + L +L  
Sbjct: 81  FTYNTLINGLMKERKIGGATRVFNEMLMLNLSPNRVTYNILIDGHCDCGNFEQALRLLDV 140

Query: 270 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM-VAGKFCAPDAVTFTTIIFGLLNV 328
           M     +PD +    +++G  K+ + + A  ++  + ++G      A  +T +I GL   
Sbjct: 141 MEAKGLRPDEVNYGALLSGLSKLAKFDIAKSLMERIRMSGMVVGYRA--YTAMIDGLCKH 198

Query: 329 GRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTT 388
           G + E+L LL  +M + G SP I+T++ ++ G  +  +++ AKEV   M   G+  +   
Sbjct: 199 GLLDESLQLL-DMMFKDGASPDIITFSVLINGFCKAGKIKNAKEVICKMFKAGLAPNYVI 257

Query: 389 YAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELV 448
           YA +I   C+   + EA R +  +    +  D ++   +I  LCR+G++ EA  F+  + 
Sbjct: 258 YATLIYNSCKKGDITEAFRNYATMTRTGHDVDYFICNVLISSLCRAGRVAEAEDFMRHMS 317

Query: 449 DSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
              + PN + ++ +I+G   L    +A+ +  EM K G  P   T+  L K
Sbjct: 318 TIDLAPNSITFDCIINGYGILGDALKAFSMFDEMIKLGHCPSHFTYGSLLK 368



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 68/165 (41%), Gaps = 35/165 (21%)

Query: 342 MPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ 401
           M   GY P IVTYN +L    +  R + A ++ + M   G+ AD  TY ++ID LC++N 
Sbjct: 1   MEGSGYVPTIVTYNTILNWCCKKGRYKAASDLIDRMESKGIEADVCTYNMLIDDLCKNN- 59

Query: 402 LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNV 461
                                          RS K       L ++    + PN   YN 
Sbjct: 60  -------------------------------RSAK---GYLLLKKMRKRMIAPNEFTYNT 85

Query: 462 VIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           +I+G  K      A ++  EM    L+P+ VT+ IL   H + GN
Sbjct: 86  LINGLMKERKIGGATRVFNEMLMLNLSPNRVTYNILIDGHCDCGN 130



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 41/74 (55%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M  LC  +++ EA KL   M   G   +VV+Y  LI G C  G+   A+ +++EM+  G+
Sbjct: 753 MHMLCKKAKLSEALKLRGKMALYGVKLDVVAYNVLISGLCADGDALAAFNLYEEMKERGL 812

Query: 61  LPNSLTYSVLVRGV 74
            PN+ TY  L+  +
Sbjct: 813 WPNTTTYCTLIDAI 826



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 60/119 (50%), Gaps = 8/119 (6%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           CG  +V EA  +   M  +  +P V ++TTL+H  C+  ++  A K+  +M   GV  + 
Sbjct: 724 CG--KVEEAMLVLDCMLQKRLIPTVATFTTLMHMLCKKAKLSEALKLRGKMALYGVKLDV 781

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSL-CREGYVNE 122
           + Y+VL+ G+    D   A    F L+E MK E  L  N   +  L+D++   EG V E
Sbjct: 782 VAYNVLISGLCADGDALAA----FNLYEEMK-ERGLWPNTTTYCTLIDAISTNEGEVEE 835


>gi|449449098|ref|XP_004142302.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g01740-like [Cucumis sativus]
 gi|449521427|ref|XP_004167731.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g01740-like [Cucumis sativus]
          Length = 585

 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 123/492 (25%), Positives = 233/492 (47%), Gaps = 12/492 (2%)

Query: 15  KLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGV 74
           KL F   S+G+ P+  S+ ++I  +CR+G +  A  +F  M   G  P+ ++Y+ L+ G 
Sbjct: 42  KLLFHFLSKGYTPHPSSFNSIISFFCRSGNVKFAEHIFISMSRFGCSPDIVSYNSLLDGY 101

Query: 75  LRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGK 134
             +  +++A  L+ ++        DL + N  F        +    NE F     M +  
Sbjct: 102 CSSYQIQKACFLVNRVRGCELNRPDLVMFNILFNGFAKVYMK----NEAFMYFGLMWK-Y 156

Query: 135 SVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAY 194
            +      G  +D  C+ G     +R+   M K G+ P+LV ++S++ G CK G    A+
Sbjct: 157 CLPSIVTYGTFVDMFCKMGDMKMGNRMFLDMMKVGIVPNLVVFSSLIDGYCKAGSLDVAF 216

Query: 195 QLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRAL 254
           +  E   +    P+E TY  L++G      L +A  + + MLS   +    +    +   
Sbjct: 217 EYFERMKECSVRPNEFTYSTLIDGCSKHGMLARADSLFEKMLSASILPNCTVYTSIIDGH 276

Query: 255 CLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPD 314
               N  + +  +  M     + D+     +I+GF ++GR +++++   + VA     PD
Sbjct: 277 FKKGNVDDAIKYINQMFDRDIKLDLTAYTVIISGFHRVGRFDKSMEA-AEYVAKNGLLPD 335

Query: 315 AVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVF 374
            +  T I+      G I+EALN  Y+++  +G+   +VT +A++ GL +   ++EA+   
Sbjct: 336 RIILTAIMDVHFKAGNIKEALNA-YKILLAKGFEADVVTLSALMDGLSKHGYLQEARRYL 394

Query: 375 NCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRS 434
                +   A+   Y + ID LC+   LD+A++   ++     + D +VY + I  LC+ 
Sbjct: 395 -----VKENANEILYTVFIDALCKEGNLDDAEKMIKEMSEAGFVPDKFVYTSWIAELCKQ 449

Query: 435 GKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
           G + +A      +V   V P+++ Y+ +I G  +  +  EA Q+  +M   G+ PD V++
Sbjct: 450 GNLLKAFMVKKRMVQEHVEPDLLTYSSLIGGLAEKGLMIEAKQVFDDMLNKGITPDFVSY 509

Query: 495 RILDKLHGNRGN 506
            IL + + N+GN
Sbjct: 510 DILIRGYHNQGN 521



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 95/360 (26%), Positives = 168/360 (46%), Gaps = 12/360 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C +  +   +++F DM   G VPN+V +++LI GYC+ G +DVA++ F+ M+ C V
Sbjct: 168 VDMFCKMGDMKMGNRMFLDMMKVGIVPNLVVFSSLIDGYCKAGSLDVAFEYFERMKECSV 227

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN  TYS L+ G  +   + RA+     L+E+M     L  N   + +++D   ++G V
Sbjct: 228 RPNEFTYSTLIDGCSKHGMLARAD----SLFEKMLSASILP-NCTVYTSIIDGHFKKGNV 282

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           ++  +    M       +  A   +I    R GR   +      + K GL P  +   +I
Sbjct: 283 DDAIKYINQMFDRDIKLDLTAYTVIISGFHRVGRFDKSMEAAEYVAKNGLLPDRIILTAI 342

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +    K G    A    +  +  G+     T   L++GL     L++AR+ L      K+
Sbjct: 343 MDVHFKAGNIKEALNAYKILLAKGFEADVVTLSALMDGLSKHGYLQEARRYLV-----KE 397

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                +  +++ ALC   N  +   ++  M +    PD     + I   CK G + +A  
Sbjct: 398 NANEILYTVFIDALCKEGNLDDAEKMIKEMSEAGFVPDKFVYTSWIAELCKQGNLLKAFM 457

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           V   MV  +   PD +T++++I GL   G + EA   ++  M  +G +P  V+Y+ ++RG
Sbjct: 458 VKKRMVQ-EHVEPDLLTYSSLIGGLAEKGLMIEA-KQVFDDMLNKGITPDFVSYDILIRG 515



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 86/367 (23%), Positives = 164/367 (44%), Gaps = 37/367 (10%)

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
           F C  ++ SL  SG  H ++++++    +G TP   S+NSI+   C+ G    A  +   
Sbjct: 22  FTCNKLLHSLINSGCGHLSAKLLFHFLSKGYTPHPSSFNSIISFFCRSGNVKFAEHIFIS 81

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
             +FG  P   +Y  L++G C    ++KA  +         V+R R C +          
Sbjct: 82  MSRFGCSPDIVSYNSLLDGYCSSYQIQKACFL---------VNRVRGCEL---------- 122

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
                           +PD++  N + NGF K+    EA      M   K+C P  VT+ 
Sbjct: 123 ---------------NRPDLVMFNILFNGFAKVYMKNEAFMYFGLM--WKYCLPSIVTYG 165

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
           T +     +G ++   N ++  M + G  P +V +++++ G  +   ++ A E F  M  
Sbjct: 166 TFVDMFCKMGDMKMG-NRMFLDMMKVGIVPNLVVFSSLIDGYCKAGSLDVAFEYFERMKE 224

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
             V  +  TY+ +IDG  +   L  A   ++ ++  S + +  VY ++I G  + G + +
Sbjct: 225 CSVRPNEFTYSTLIDGCSKHGMLARADSLFEKMLSASILPNCTVYTSIIDGHFKKGNVDD 284

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
           A+ ++ ++ D  +  ++  Y V+I G  ++    ++ +    + KNGL PD +    +  
Sbjct: 285 AIKYINQMFDRDIKLDLTAYTVIISGFHRVGRFDKSMEAAEYVAKNGLLPDRIILTAIMD 344

Query: 500 LHGNRGN 506
           +H   GN
Sbjct: 345 VHFKAGN 351



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 63/292 (21%), Positives = 130/292 (44%), Gaps = 2/292 (0%)

Query: 206 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 265
            P+  T   L+  L        + K+L   LSK         N  +   C   N     +
Sbjct: 18  FPTPFTCNKLLHSLINSGCGHLSAKLLFHFLSKGYTPHPSSFNSIISFFCRSGNVKFAEH 77

Query: 266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 325
           + + M +  C PD+++ N++++G+C   +I++A  ++N +   +   PD V F  +  G 
Sbjct: 78  IFISMSRFGCSPDIVSYNSLLDGYCSSYQIQKACFLVNRVRGCELNRPDLVMFNILFNGF 137

Query: 326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 385
             V    EA   +Y  +  +   P IVTY   +    ++  ++    +F  M+ +G+V +
Sbjct: 138 AKVYMKNEA--FMYFGLMWKYCLPSIVTYGTFVDMFCKMGDMKMGNRMFLDMMKVGIVPN 195

Query: 386 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY 445
              ++ +IDG C++  LD A  +++ +   S   + + Y+ +I G  + G +  A     
Sbjct: 196 LVVFSSLIDGYCKAGSLDVAFEYFERMKECSVRPNEFTYSTLIDGCSKHGMLARADSLFE 255

Query: 446 ELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           +++ + + PN   Y  +IDG  K     +A + + +M    +  D   + ++
Sbjct: 256 KMLSASILPNCTVYTSIIDGHFKKGNVDDAIKYINQMFDRDIKLDLTAYTVI 307


>gi|8920567|gb|AAF81289.1|AC027656_6 Contains similarity to a hypothetical protein F23N19.4 gi|6630464
           from Arabidopsis thaliana BAC F23N19 gb|AC007190. It
           contains a PPR repeat domain PF|01535 [Arabidopsis
           thaliana]
          Length = 797

 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 146/508 (28%), Positives = 239/508 (47%), Gaps = 34/508 (6%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M   C L  V  A   F  +   G VP+V S+  LI+G C  G +  A ++  +M   GV
Sbjct: 242 MSGYCKLGFVDMAKSFFCTVLKCGLVPSVYSHNILINGLCLVGSIAEALELASDMNKHGV 301

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKE--EEDLSVNNAAFANLVDSLCREG 118
            P+S+TY++L +G      +  A       WE +++  ++ LS +   +  L+   C+ G
Sbjct: 302 EPDSVTYNILAKGFHLLGMISGA-------WEVIRDMLDKGLSPDVITYTILLCGQCQLG 354

Query: 119 YVNEVFRIAEDM-PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
            ++    + +DM  +G  +N    C  M+  LC++GR   A  +   M+  GL+P LV+Y
Sbjct: 355 NIDMGLVLLKDMLSRGFELNSIIPCSVMLSGLCKTGRIDEALSLFNQMKADGLSPDLVAY 414

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
           + ++HGLCK G    A  L +E      LP+  T+  L+ GLC +  L +AR +L  ++S
Sbjct: 415 SIVIHGLCKLGKFDMALWLYDEMCDKRILPNSRTHGALLLGLCQKGMLLEARSLLDSLIS 474

Query: 238 KKDVDRTRICNI----YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMG 293
             +     + NI    Y ++ C I+   EL  V++   +T   P V T N++I G+CK  
Sbjct: 475 SGETLDIVLYNIVIDGYAKSGC-IEEALELFKVVI---ETGITPSVATFNSLIYGYCKTQ 530

Query: 294 RIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVT 353
            I EA K+L D++     AP  V++TT++    N G  + +++ L + M   G  P  VT
Sbjct: 531 NIAEARKIL-DVIKLYGLAPSVVSYTTLMDAYANCGNTK-SIDELRREMKAEGIPPTNVT 588

Query: 354 YNAVLRGL------------FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ 401
           Y+ + +GL             R R  E+ K+    M   G+  D  TY  +I  LC    
Sbjct: 589 YSVIFKGLCRGWKHENCNHVLRERIFEKCKQGLRDMESEGIPPDQITYNTIIQYLCRVKH 648

Query: 402 LDEAKRFWDDIVWPSNIH-DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYN 460
           L  A  F  +I+   N+   +  Y  +I  LC  G I +A  F+Y L +  V+ +   Y 
Sbjct: 649 LSGAFVFL-EIMKSRNLDASSATYNILIDSLCVYGYIRKADSFIYSLQEQNVSLSKFAYT 707

Query: 461 VVIDGACKLSMKREAYQILREMRKNGLN 488
            +I   C       A ++  ++   G N
Sbjct: 708 TLIKAHCVKGDPEMAVKLFHQLLHRGFN 735



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 124/460 (26%), Positives = 228/460 (49%), Gaps = 23/460 (5%)

Query: 56  RHCGVLPNS--------LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAF 107
           R C +L NS        L + +L+    R R V+ +  ++ K+     ++++L+V+  ++
Sbjct: 121 RLCELLSNSFRKWESTGLVWDMLLFLSSRLRMVDDSLYILKKM-----KDQNLNVSTQSY 175

Query: 108 ANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRK 167
            +++        + +V++  +D         E     ++D LCR  +   A   +     
Sbjct: 176 NSVLYHFRETDKMWDVYKEIKD-------KNEHTYSTVVDGLCRQQKLEDAVLFLRTSEW 228

Query: 168 RGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEK 227
           + + PS+VS+NSI+ G CK G    A       ++ G +PS +++ +L+ GLC    + +
Sbjct: 229 KDIGPSVVSFNSIMSGYCKLGFVDMAKSFFCTVLKCGLVPSVYSHNILINGLCLVGSIAE 288

Query: 228 ARKVLQFMLSKKDVDRTRIC-NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVI 286
           A ++   M +K  V+   +  NI  +   L+   +    V+  ML     PDVIT   ++
Sbjct: 289 ALELASDM-NKHGVEPDSVTYNILAKGFHLLGMISGAWEVIRDMLDKGLSPDVITYTILL 347

Query: 287 NGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
            G C++G I+  L +L DM++  F     +  + ++ GL   GRI EAL+L  Q M   G
Sbjct: 348 CGQCQLGNIDMGLVLLKDMLSRGFELNSIIPCSVMLSGLCKTGRIDEALSLFNQ-MKADG 406

Query: 347 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
            SP +V Y+ V+ GL +L + + A  +++ M    ++ +S T+  ++ GLC+   L EA+
Sbjct: 407 LSPDLVAYSIVIHGLCKLGKFDMALWLYDEMCDKRILPNSRTHGALLLGLCQKGMLLEAR 466

Query: 407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466
              D ++      D  +Y  +I G  +SG I EA+     ++++G+TP++  +N +I G 
Sbjct: 467 SLLDSLISSGETLDIVLYNIVIDGYAKSGCIEEALELFKVVIETGITPSVATFNSLIYGY 526

Query: 467 CKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           CK     EA +IL  ++  GL P  V++  L   + N GN
Sbjct: 527 CKTQNIAEARKILDVIKLYGLAPSVVSYTTLMDAYANCGN 566



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 115/415 (27%), Positives = 196/415 (47%), Gaps = 11/415 (2%)

Query: 89  KLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV---FRIAEDMPQGKSVNEEFACGHM 145
           K+W+  KE +D   N   ++ +VD LCR+  + +     R +E    G SV    +   +
Sbjct: 187 KMWDVYKEIKD--KNEHTYSTVVDGLCRQQKLEDAVLFLRTSEWKDIGPSV---VSFNSI 241

Query: 146 IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY 205
           +   C+ G    A      + K GL PS+ S+N +++GLC  G    A +L  +  + G 
Sbjct: 242 MSGYCKLGFVDMAKSFFCTVLKCGLVPSVYSHNILINGLCLVGSIAEALELASDMNKHGV 301

Query: 206 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 265
            P   TY +L +G      +  A +V++ ML K          I L   C + N    L 
Sbjct: 302 EPDSVTYNILAKGFHLLGMISGAWEVIRDMLDKGLSPDVITYTILLCGQCQLGNIDMGLV 361

Query: 266 VLVFMLQTQCQPD-VITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 324
           +L  ML    + + +I  + +++G CK GRI+EAL + N M A    +PD V ++ +I G
Sbjct: 362 LLKDMLSRGFELNSIIPCSVMLSGLCKTGRIDEALSLFNQMKADGL-SPDLVAYSIVIHG 420

Query: 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 384
           L  +G+   AL  LY  M  +   P   T+ A+L GL +   + EA+ + + ++  G   
Sbjct: 421 LCKLGKFDMAL-WLYDEMCDKRILPNSRTHGALLLGLCQKGMLLEARSLLDSLISSGETL 479

Query: 385 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFL 444
           D   Y IVIDG  +S  ++EA   +  ++          + ++I G C++  I EA   L
Sbjct: 480 DIVLYNIVIDGYAKSGCIEEALELFKVVIETGITPSVATFNSLIYGYCKTQNIAEARKIL 539

Query: 445 YELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
             +   G+ P++V Y  ++D        +   ++ REM+  G+ P  VT+ ++ K
Sbjct: 540 DVIKLYGLAPSVVSYTTLMDAYANCGNTKSIDELRREMKAEGIPPTNVTYSVIFK 594



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 107/394 (27%), Positives = 178/394 (45%), Gaps = 19/394 (4%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R+ EA  LF  MK+ G  P++V+Y+ +IHG C+ G+ D+A  ++DEM    +LPN
Sbjct: 386 LCKTGRIDEALSLFNQMKADGLSPDLVAYSIVIHGLCKLGKFDMALWLYDEMCDKRILPN 445

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           S T+  L+ G+ +   +  A  L+  L     E  D+ + N        S C E  + E+
Sbjct: 446 SRTHGALLLGLCQKGMLLEARSLLDSLISS-GETLDIVLYNIVIDGYAKSGCIEEAL-EL 503

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           F++  +     SV        +I   C++     A +++ V++  GL PS+VSY +++  
Sbjct: 504 FKVVIETGITPSVA---TFNSLIYGYCKTQNIAEARKILDVIKLYGLAPSVVSYTTLMDA 560

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLC------------GESDLEKARKV 231
               G      +L  E    G  P+  TY V+ +GLC             E   EK ++ 
Sbjct: 561 YANCGNTKSIDELRREMKAEGIPPTNVTYSVIFKGLCRGWKHENCNHVLRERIFEKCKQG 620

Query: 232 LQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK 291
           L+ M S+         N  ++ LC +K+ +     L  M          T N +I+  C 
Sbjct: 621 LRDMESEGIPPDQITYNTIIQYLCRVKHLSGAFVFLEIMKSRNLDASSATYNILIDSLCV 680

Query: 292 MGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGI 351
            G I +A   +  +   +  +     +TT+I      G  + A+ L +Q++  RG++  I
Sbjct: 681 YGYIRKADSFIYSL-QEQNVSLSKFAYTTLIKAHCVKGDPEMAVKLFHQLL-HRGFNVSI 738

Query: 352 VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 385
             Y+AV+  L R   V E+K  F  ML  G+  D
Sbjct: 739 RDYSAVINRLCRRHLVNESKFFFCLMLSQGISPD 772



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 117/256 (45%), Gaps = 7/256 (2%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C    + EA K+   +K  G  P+VVSYTTL+  Y   G      ++  EM+  G+ P +
Sbjct: 527 CKTQNIAEARKILDVIKLYGLAPSVVSYTTLMDAYANCGNTKSIDELRREMKAEGIPPTN 586

Query: 65  LTYSVLVRGVLRTRDVERAN-VLMFKLWERMK------EEEDLSVNNAAFANLVDSLCRE 117
           +TYSV+ +G+ R    E  N VL  +++E+ K      E E +  +   +  ++  LCR 
Sbjct: 587 VTYSVIFKGLCRGWKHENCNHVLRERIFEKCKQGLRDMESEGIPPDQITYNTIIQYLCRV 646

Query: 118 GYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
            +++  F   E M              +IDSLC  G    A   +Y ++++ ++ S  +Y
Sbjct: 647 KHLSGAFVFLEIMKSRNLDASSATYNILIDSLCVYGYIRKADSFIYSLQEQNVSLSKFAY 706

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
            +++   C  G    A +L  + +  G+  S   Y  ++  LC    + +++     MLS
Sbjct: 707 TTLIKAHCVKGDPEMAVKLFHQLLHRGFNVSIRDYSAVINRLCRRHLVNESKFFFCLMLS 766

Query: 238 KKDVDRTRICNIYLRA 253
           +       IC + +++
Sbjct: 767 QGISPDLDICEVMIKS 782


>gi|413924821|gb|AFW64753.1| hypothetical protein ZEAMMB73_344298 [Zea mays]
          Length = 698

 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 111/369 (30%), Positives = 191/369 (51%), Gaps = 3/369 (0%)

Query: 138 EEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLL 197
           ++++   M+  LC  GR      ++      G  P  V YN ++ G C+ G   R   LL
Sbjct: 80  DDYSTCVMVRGLCLEGRVEEGRGLIEARWGEGCVPGAVFYNVLIDGYCRRGDIGRGLLLL 139

Query: 198 EEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLI 257
            E    G +P+  TY  ++  L  + DL K   +L  M ++      +I N  + ALC  
Sbjct: 140 GEMETKGIIPTVVTYGAIIHWLGRKGDLTKVESLLGEMRARGLSPNVQIYNTVINALCKC 199

Query: 258 KNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVT 317
           ++ ++  ++L  M++++  PDV+T NT+I GFC+ G + EALK+L + +  +   P+ ++
Sbjct: 200 RSASQASDMLNQMVKSRFNPDVVTFNTMIAGFCREGDVREALKLLREAIR-RGLEPNQLS 258

Query: 318 FTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCM 377
           +T +I G    G    A +LL ++M  RG++P ++T  A++ GL    +V +A  V   M
Sbjct: 259 YTPLIHGFCVRGEAMVASDLLVEMM-GRGHTPDMITLGALIHGLVVSGQVNDALIVREKM 317

Query: 378 LGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKI 437
               V+ D+  Y ++I GLC+   L  AK   ++++      D ++Y  +I G  RS K+
Sbjct: 318 AERQVMPDANIYNVLISGLCKKRMLSAAKNLLEEMLEQKVQPDKFIYTTLIDGFVRSDKL 377

Query: 438 HEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            +A   ++E ++    P+IV YNV+I G CK  M +EA   +  MRK G  PD  T+  L
Sbjct: 378 SDARK-IFEFMEEKACPDIVAYNVMIKGYCKFGMMKEAVTCMSSMRKAGCIPDEFTYTTL 436

Query: 498 DKLHGNRGN 506
              +  +G+
Sbjct: 437 VDGYAKKGD 445



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 124/509 (24%), Positives = 235/509 (46%), Gaps = 23/509 (4%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C    +G    L  +M+++G +P VV+Y  +IH   R G++     +  EMR  G+
Sbjct: 123 IDGYCRRGDIGRGLLLLGEMETKGIIPTVVTYGAIIHWLGRKGDLTKVESLLGEMRARGL 182

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN   Y+ ++  + + R   +A+ ++ ++      +   + +   F  ++   CREG V
Sbjct: 183 SPNVQIYNTVINALCKCRSASQASDMLNQMV-----KSRFNPDVVTFNTMIAGFCREGDV 237

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E  ++  +  +      + +   +I   C  G    AS ++  M  RG TP +++  ++
Sbjct: 238 REALKLLREAIRRGLEPNQLSYTPLIHGFCVRGEAMVASDLLVEMMGRGHTPDMITLGAL 297

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +HGL   G    A  + E+  +   +P  + Y VL+ GLC +  L  A+ +L+ ML +K 
Sbjct: 298 IHGLVVSGQVNDALIVREKMAERQVMPDANIYNVLISGLCKKRMLSAAKNLLEEMLEQKV 357

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                I    +         ++   +  FM +  C PD++  N +I G+CK G ++EA+ 
Sbjct: 358 QPDKFIYTTLIDGFVRSDKLSDARKIFEFMEEKAC-PDIVAYNVMIKGYCKFGMMKEAVT 416

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
            ++ M     C PD  T+TT++ G    G I  +L LL  +M +R   P I TY +++ G
Sbjct: 417 CMSSMRKAG-CIPDEFTYTTLVDGYAKKGDISASLRLLCDMMKRR-CKPNIFTYASLICG 474

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
              +     A+++F  M   G+  +   Y ++I  L + +++ +A  +++ ++      +
Sbjct: 475 YCNIGDTYSAEDLFAKMQSEGLFPNVVHYTVLIGSLFKKDKVIQAAAYFEHMLLNHCPPN 534

Query: 421 NYVYAAMIKGL--CRSGKI----------HEAVHFL---YELVDSGVTPNIVCYNVVIDG 465
           +     ++ GL  CR G +          HE    L     L+  G+ P I  YN +I  
Sbjct: 535 DATVHYLVNGLVNCRHGMVNSNRSDTKQAHEKSALLDVFRGLISDGLDPRISAYNAIIFS 594

Query: 466 ACKLSMKREAYQILREMRKNGLNPDAVTW 494
            C+ +M  +A  +  +M   G  PD +T+
Sbjct: 595 LCRHNMLGKAMDLKDKMSNKGCLPDPITF 623



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 115/482 (23%), Positives = 217/482 (45%), Gaps = 10/482 (2%)

Query: 13  AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVR 72
           A  L+ +M  R    +  S   ++ G C  G ++    + +     G +P ++ Y+VL+ 
Sbjct: 65  ARGLYGEMLVREGGADDYSTCVMVRGLCLEGRVEEGRGLIEARWGEGCVPGAVFYNVLID 124

Query: 73  GVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDM-P 131
           G  R  D+ R  +L+ ++     E + +      +  ++  L R+G + +V  +  +M  
Sbjct: 125 GYCRRGDIGRGLLLLGEM-----ETKGIIPTVVTYGAIIHWLGRKGDLTKVESLLGEMRA 179

Query: 132 QGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCM 191
           +G S N +     +I++LC+      AS ++  M K    P +V++N+++ G C+ G   
Sbjct: 180 RGLSPNVQIY-NTVINALCKCRSASQASDMLNQMVKSRFNPDVVTFNTMIAGFCREGDVR 238

Query: 192 RAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYL 251
            A +LL E I+ G  P++ +Y  L+ G C   +   A  +L  M+ +            +
Sbjct: 239 EALKLLREAIRRGLEPNQLSYTPLIHGFCVRGEAMVASDLLVEMMGRGHTPDMITLGALI 298

Query: 252 RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC 311
             L +     + L V   M + Q  PD    N +I+G CK   +  A  +L +M+  K  
Sbjct: 299 HGLVVSGQVNDALIVREKMAERQVMPDANIYNVLISGLCKKRMLSAAKNLLEEMLEQKV- 357

Query: 312 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK 371
            PD   +TT+I G +   ++ +A   +++ M ++   P IV YN +++G  +   ++EA 
Sbjct: 358 QPDKFIYTTLIDGFVRSDKLSDARK-IFEFMEEKA-CPDIVAYNVMIKGYCKFGMMKEAV 415

Query: 372 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 431
              + M   G + D  TY  ++DG  +   +  + R   D++      + + YA++I G 
Sbjct: 416 TCMSSMRKAGCIPDEFTYTTLVDGYAKKGDISASLRLLCDMMKRRCKPNIFTYASLICGY 475

Query: 432 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 491
           C  G  + A     ++   G+ PN+V Y V+I    K     +A      M  N   P+ 
Sbjct: 476 CNIGDTYSAEDLFAKMQSEGLFPNVVHYTVLIGSLFKKDKVIQAAAYFEHMLLNHCPPND 535

Query: 492 VT 493
            T
Sbjct: 536 AT 537



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 106/430 (24%), Positives = 193/430 (44%), Gaps = 10/430 (2%)

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFAN-LVDSLCREGYVNEVFRIA 127
           V+VRG+     VE    L+   W       +  V  A F N L+D  CR G +     + 
Sbjct: 86  VMVRGLCLEGRVEEGRGLIEARWG------EGCVPGAVFYNVLIDGYCRRGDIGRGLLLL 139

Query: 128 EDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKH 187
            +M     +      G +I  L R G       ++  MR RGL+P++  YN++++ LCK 
Sbjct: 140 GEMETKGIIPTVVTYGAIIHWLGRKGDLTKVESLLGEMRARGLSPNVQIYNTVINALCKC 199

Query: 188 GGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC 247
               +A  +L + ++  + P   T+  ++ G C E D+ +A K+L+  + +         
Sbjct: 200 RSASQASDMLNQMVKSRFNPDVVTFNTMIAGFCREGDVREALKLLREAIRRGLEPNQLSY 259

Query: 248 NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA 307
              +   C+        ++LV M+     PD+ITL  +I+G    G++ +AL ++ + +A
Sbjct: 260 TPLIHGFCVRGEAMVASDLLVEMMGRGHTPDMITLGALIHGLVVSGQVNDAL-IVREKMA 318

Query: 308 GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRV 367
            +   PDA  +  +I GL     +  A NLL +++ Q+   P    Y  ++ G  R  ++
Sbjct: 319 ERQVMPDANIYNVLISGLCKKRMLSAAKNLLEEMLEQK-VQPDKFIYTTLIDGFVRSDKL 377

Query: 368 EEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAM 427
            +A+++F  M       D   Y ++I G C+   + EA      +     I D + Y  +
Sbjct: 378 SDARKIFEFMEE-KACPDIVAYNVMIKGYCKFGMMKEAVTCMSSMRKAGCIPDEFTYTTL 436

Query: 428 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
           + G  + G I  ++  L +++     PNI  Y  +I G C +     A  +  +M+  GL
Sbjct: 437 VDGYAKKGDISASLRLLCDMMKRRCKPNIFTYASLICGYCNIGDTYSAEDLFAKMQSEGL 496

Query: 488 NPDAVTWRIL 497
            P+ V + +L
Sbjct: 497 FPNVVHYTVL 506



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 111/449 (24%), Positives = 193/449 (42%), Gaps = 60/449 (13%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C    V EA KL  +   RG  PN +SYT LIHG+C  GE  VA  +  EM   G  P+
Sbjct: 231 FCREGDVREALKLLREAIRRGLEPNQLSYTPLIHGFCVRGEAMVASDLLVEMMGRGHTPD 290

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +T   L+ G++ +  V  A ++  K+ ER +   D ++ N     L+  LC++  ++  
Sbjct: 291 MITLGALIHGLVVSGQVNDALIVREKMAER-QVMPDANIYNV----LISGLCKKRMLSAA 345

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             + E+M + K   ++F    +ID   RS +   A ++   M ++   P +V+YN ++ G
Sbjct: 346 KNLLEEMLEQKVQPDKFIYTTLIDGFVRSDKLSDARKIFEFMEEKA-CPDIVAYNVMIKG 404

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK G    A   +    + G +P E TY  LV+G   + D+  +               
Sbjct: 405 YCKFGMMKEAVTCMSSMRKAGCIPDEFTYTTLVDGYAKKGDISAS--------------- 449

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                  LR LC              M++ +C+P++ T  ++I G+C +G    A  +  
Sbjct: 450 -------LRLLC-------------DMMKRRCKPNIFTYASLICGYCNIGDTYSAEDLFA 489

Query: 304 DMVA-GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
            M + G F  P+ V +T +I  L    ++ +A    ++ M      P   T + ++ GL 
Sbjct: 490 KMQSEGLF--PNVVHYTVLIGSLFKKDKVIQA-AAYFEHMLLNHCPPNDATVHYLVNGLV 546

Query: 363 RLRR---------VEEAKE------VFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKR 407
             R           ++A E      VF  ++  G+    + Y  +I  LC  N L +A  
Sbjct: 547 NCRHGMVNSNRSDTKQAHEKSALLDVFRGLISDGLDPRISAYNAIIFSLCRHNMLGKAMD 606

Query: 408 FWDDIVWPSNIHDNYVYAAMIKGLCRSGK 436
             D +     + D   + +++ G   +G+
Sbjct: 607 LKDKMSNKGCLPDPITFLSLLYGFSSAGE 635



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 102/243 (41%), Gaps = 20/243 (8%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C    + EA      M+  G +P+  +YTTL+ GY + G++  + ++  +M      PN 
Sbjct: 406 CKFGMMKEAVTCMSSMRKAGCIPDEFTYTTLVDGYAKKGDISASLRLLCDMMKRRCKPNI 465

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
            TY+ L+ G     D   A  L  K+     + E L  N   +  L+ SL ++  V +  
Sbjct: 466 FTYASLICGYCNIGDTYSAEDLFAKM-----QSEGLFPNVVHYTVLIGSLFKKDKVIQAA 520

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSL--CRSG----------RNHGASRVVYVMR---KRG 169
              E M        +    ++++ L  CR G          + H  S ++ V R     G
Sbjct: 521 AYFEHMLLNHCPPNDATVHYLVNGLVNCRHGMVNSNRSDTKQAHEKSALLDVFRGLISDG 580

Query: 170 LTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKAR 229
           L P + +YN+I+  LC+H    +A  L ++    G LP   T+  L+ G     +  K R
Sbjct: 581 LDPRISAYNAIIFSLCRHNMLGKAMDLKDKMSNKGCLPDPITFLSLLYGFSSAGESGKWR 640

Query: 230 KVL 232
             L
Sbjct: 641 SAL 643



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 48/104 (46%)

Query: 403 DEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVV 462
           + A+  + +++      D+Y    M++GLC  G++ E    +      G  P  V YNV+
Sbjct: 63  ERARGLYGEMLVREGGADDYSTCVMVRGLCLEGRVEEGRGLIEARWGEGCVPGAVFYNVL 122

Query: 463 IDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           IDG C+         +L EM   G+ P  VT+  +    G +G+
Sbjct: 123 IDGYCRRGDIGRGLLLLGEMETKGIIPTVVTYGAIIHWLGRKGD 166


>gi|225423589|ref|XP_002275605.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Vitis vinifera]
          Length = 644

 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 131/487 (26%), Positives = 236/487 (48%), Gaps = 48/487 (9%)

Query: 31  SYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKL 90
           ++ +LI  Y  +G+    ++VFD M+    +     + ++ R   +    E+A     +L
Sbjct: 66  TFYSLIENYANSGDFGTLFQVFDRMKRERRVFIEKNFILVFRAYGKAHLPEKA----IEL 121

Query: 91  WERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKS--VNEEFACGHMIDS 148
           + RM +E        +F ++++ + +EG  +      E    GK+       +   +I +
Sbjct: 122 FGRMVDEFQCRRTVRSFNSVLNVIIQEGLFHRALEFYECGVGGKTNISPNVLSFNLVIKA 181

Query: 149 LCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPS 208
           +C+ G    A  V   M  +   P + +Y +++ GLCK      A  LL+E    G  PS
Sbjct: 182 MCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPS 241

Query: 209 EHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLV 268
             T+ VL+ GLC + D+ +  K++               N++L+                
Sbjct: 242 SVTFNVLINGLCKKGDMVRVTKLVD--------------NMFLKG--------------- 272

Query: 269 FMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNV 328
                 C P+ +T NT+ING C  G++++A+ +L+ MVA K C P+ VT+ T+I GL+  
Sbjct: 273 ------CVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASK-CVPNDVTYGTLINGLVKQ 325

Query: 329 GRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTT 388
           GR  + ++LL   + +RG+      Y+ ++ GLF+  + EEA  ++  M+  G   +   
Sbjct: 326 GRSVDGVHLLSS-LEERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVV 384

Query: 389 YAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELV 448
           Y+ +IDGLC   +LDEAK    ++V      + + Y+++IKG  ++G   +A+    E+ 
Sbjct: 385 YSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMA 444

Query: 449 DSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG--NRGN 506
            +   PN +CY+V+I G C+    REA  +   M   GL PD V +  +  +HG  N G+
Sbjct: 445 KNNCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSM--IHGLCNAGS 502

Query: 507 -DFGLRI 512
            + GL++
Sbjct: 503 VEVGLKL 509



 Score =  171 bits (433), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 113/427 (26%), Positives = 215/427 (50%), Gaps = 8/427 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           +C L  V  A ++F +M  +   P+V +Y TL+ G C+   +D A  + DEM+  G  P+
Sbjct: 182 MCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPS 241

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           S+T++VL+ G+ +  D+ R   L+  ++ +         N   +  +++ LC +G +++ 
Sbjct: 242 SVTFNVLINGLCKKGDMVRVTKLVDNMFLK-----GCVPNEVTYNTIINGLCLKGKLDKA 296

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             + + M   K V  +   G +I+ L + GR+     ++  + +RG   +  +Y++++ G
Sbjct: 297 VSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYSTLISG 356

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           L K      A  L ++ ++ G  P+   Y  L++GLC E  L++A+++L  M++K     
Sbjct: 357 LFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPN 416

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               +  ++      N  + + V   M +  C P+ I  + +I+G C+ G++ EA+ +  
Sbjct: 417 AFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWT 476

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYS-PGIVTYNAVLRGLF 362
            M+ G+   PD V ++++I GL N G ++  L L  +++ Q   S P +VTYN +LR L 
Sbjct: 477 HML-GRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRALC 535

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCES-NQLDEAKRFWDDIVWPSNIHDN 421
           +   +  A ++ N ML  G   D  T  I ++ L E  N   + + F D++V   +    
Sbjct: 536 KQNSISHAIDLLNSMLDRGCNPDLITCNIFLNALREKLNPPQDGREFLDELVVRLHKRQR 595

Query: 422 YVYAAMI 428
            V AA I
Sbjct: 596 IVGAAKI 602



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 122/498 (24%), Positives = 235/498 (47%), Gaps = 66/498 (13%)

Query: 27  PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVL 86
           PNV+S+  +I   C+ G +D A +VF EM      P+  TY  L+ G+ +   ++ A +L
Sbjct: 170 PNVLSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLL 229

Query: 87  MFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMI 146
           + ++     + E    ++  F  L++ LC++G +  V ++ ++M     V  E     +I
Sbjct: 230 LDEM-----QIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTII 284

Query: 147 DSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL 206
           + LC  G+   A  ++  M      P+ V+Y ++++GL K G  +    LL    + G+ 
Sbjct: 285 NGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHH 344

Query: 207 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 266
            +E+ Y  L+ GL  E   E+A  + + M+ K                            
Sbjct: 345 ANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKG--------------------------- 377

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
                   CQP+++  + +I+G C+ G+++EA ++L +MV  K C P+A T++++I G  
Sbjct: 378 --------CQPNIVVYSALIDGLCREGKLDEAKEILCEMV-NKGCTPNAFTYSSLIKGFF 428

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
             G  Q+A+  +++ M +    P  + Y+ ++ GL    ++ EA  ++  MLG G+  D 
Sbjct: 429 KTGNSQKAIR-VWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDV 487

Query: 387 TTYAIVIDGLCESNQLDEAKRFWDDIVW--PSNIHDNYVYAAMIKGLCRSGKIHEAVHFL 444
             Y+ +I GLC +  ++   + +++++     +  D   Y  +++ LC+   I  A+  L
Sbjct: 488 VAYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRALCKQNSISHAIDLL 547

Query: 445 YELVDSGVTPNIVCYNVVI-----------DGACKLS------MKRE----AYQILREMR 483
             ++D G  P+++  N+ +           DG   L        KR+    A +I+  M 
Sbjct: 548 NSMLDRGCNPDLITCNIFLNALREKLNPPQDGREFLDELVVRLHKRQRIVGAAKIIEVML 607

Query: 484 KNGLNPDAVTW-RILDKL 500
           +  L P+A TW RI+ +L
Sbjct: 608 QKFLPPNASTWERIIPEL 625



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 111/426 (26%), Positives = 208/426 (48%), Gaps = 32/426 (7%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           MD LC   R+ EA  L  +M+  G  P+ V++  LI+G C+ G+M    K+ D M   G 
Sbjct: 214 MDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGC 273

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREG-Y 119
           +PN +TY+ ++ G+     +++A      L +RM   + +  N+  +  L++ L ++G  
Sbjct: 274 VPNEVTYNTIINGLCLKGKLDKA----VSLLDRMVASKCVP-NDVTYGTLINGLVKQGRS 328

Query: 120 VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           V+ V  ++    +G   N E+A   +I  L +  ++  A  +   M ++G  P++V Y++
Sbjct: 329 VDGVHLLSSLEERGHHAN-EYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSA 387

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++ GLC+ G    A ++L E +  G  P+  TY  L++G     + +KA +V + M +K 
Sbjct: 388 LIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEM-AKN 446

Query: 240 DVDRTRIC-NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
           +     IC ++ +  LC      E + +   ML    +PDV+  +++I+G C  G +E  
Sbjct: 447 NCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVG 506

Query: 299 LKVLNDMVAGKF-CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           LK+ N+M+  +    PD VT+  ++  L     I  A++LL   M  RG +P ++T N  
Sbjct: 507 LKLFNEMLCQESDSQPDVVTYNILLRALCKQNSISHAIDLL-NSMLDRGCNPDLITCNIF 565

Query: 358 LRG---------------------LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 396
           L                       L + +R+  A ++   ML   +  +++T+  +I  L
Sbjct: 566 LNALREKLNPPQDGREFLDELVVRLHKRQRIVGAAKIIEVMLQKFLPPNASTWERIIPEL 625

Query: 397 CESNQL 402
           C+  ++
Sbjct: 626 CKPKKV 631


>gi|302792409|ref|XP_002977970.1| hypothetical protein SELMODRAFT_108199 [Selaginella moellendorffii]
 gi|300153991|gb|EFJ20627.1| hypothetical protein SELMODRAFT_108199 [Selaginella moellendorffii]
          Length = 695

 Score =  185 bits (469), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 139/492 (28%), Positives = 232/492 (47%), Gaps = 31/492 (6%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEM-RHCGVLPNSLTYSVLVRGVLRTR 78
           M   G  PN + Y  LI   C+ G +  A      M +HC   PN ++Y++++ G  + R
Sbjct: 1   MLEAGLFPNAILYNNLISCLCKAGMLAEAESYLKRMPQHCA--PNVVSYNIIIDGYCKAR 58

Query: 79  DVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNE 138
           ++E+A   +     R  EE        A++++V S C+ G V++   +  +MP      +
Sbjct: 59  NIEKALAFL-----REMEELGHPPTPHAYSSIVQSFCKTGNVSKAMDVFAEMPAKGCEPD 113

Query: 139 EFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLE 198
                 ++  L R+ + H A  +   M  RG  P +V+YN+++ GLCK      A  LLE
Sbjct: 114 IVNFNVLLSGLWRARKIHEARELFRSMNSRGCKPDVVTYNTMIAGLCKWKKLDEAVFLLE 173

Query: 199 EGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIK 258
              Q    P+  TY  L++ LC  + L++A +V + M           C     A  ++ 
Sbjct: 174 RMKQEDVSPTFVTYTTLIDHLCKFTRLQQAYEVFEKMAEGP-------CACTEPAYSVLF 226

Query: 259 NPTELLNVLV---FMLQTQCQPDV-ITLNT---VINGFCKM-GRIEEALKVLNDMVAGKF 310
           N  +    LV    +    C+ +V +T NT   V+ G  KM G   EA K++ +M+ GK 
Sbjct: 227 NKLQRAGKLVEASRVYSDMCRKNVCMTDNTYSLVVLGLSKMDGGNVEAAKLVTEMM-GKK 285

Query: 311 CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEA 370
            APD   ++ +I GL    R  EA  + +Q M  RG SP +VTYN +L GL    ++++A
Sbjct: 286 IAPDFYAYSILINGLCKARRPGEAKEM-FQEMRGRGISPTVVTYNTLLEGLLSTAKLQDA 344

Query: 371 KEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKG 430
            E+   ML  G + D+ +Y ++I G C +   +EA   + D++    + + + Y  MI G
Sbjct: 345 MELTYFMLDQGRLPDTCSYNLMIRGFCANGDTNEAYCLFQDMIKDGIVLNTWTYNFMIVG 404

Query: 431 LCRSGKIHEAVHFLYELVDSG-----VTPNIVCYNVVIDGACKLSMKREAYQILREMRKN 485
             +  +   +   L++ + SG       PN+  Y ++I   CK     EA+++L  MR  
Sbjct: 405 FIKD-EAWSSAWMLFKRMQSGKNDKVPAPNMFTYEILISSLCKTDQVEEAFKLLSAMRDK 463

Query: 486 GLNPDAVTWRIL 497
           G  P    W +L
Sbjct: 464 GFVPSLKIWEVL 475



 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 129/538 (23%), Positives = 241/538 (44%), Gaps = 63/538 (11%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C    + +A     +M+  GH P   +Y++++  +C+TG +  A  VF EM   G 
Sbjct: 51  IDGYCKARNIEKALAFLREMEELGHPPTPHAYSSIVQSFCKTGNVSKAMDVFAEMPAKGC 110

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKL---------------------WERMKE--- 96
            P+ + ++VL+ G+ R R +  A  L   +                     W+++ E   
Sbjct: 111 EPDIVNFNVLLSGLWRARKIHEARELFRSMNSRGCKPDVVTYNTMIAGLCKWKKLDEAVF 170

Query: 97  ------EEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC 150
                 +ED+S     +  L+D LC+   + + + + E M +G     E A   + + L 
Sbjct: 171 LLERMKQEDVSPTFVTYTTLIDHLCKFTRLQQAYEVFEKMAEGPCACTEPAYSVLFNKLQ 230

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK-HGGCMRAYQLLEEGIQFGYLPSE 209
           R+G+   ASRV   M ++ +  +  +Y+ +V GL K  GG + A +L+ E +     P  
Sbjct: 231 RAGKLVEASRVYSDMCRKNVCMTDNTYSLVVLGLSKMDGGNVEAAKLVTEMMGKKIAPDF 290

Query: 210 HTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVF 269
           + Y +L+ GLC      +A+++ Q M  +         N  L  L       + + +  F
Sbjct: 291 YAYSILINGLCKARRPGEAKEMFQEMRGRGISPTVVTYNTLLEGLLSTAKLQDAMELTYF 350

Query: 270 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG 329
           ML     PD  + N +I GFC  G   EA  +  DM+       D +   T  +  + VG
Sbjct: 351 MLDQGRLPDTCSYNLMIRGFCANGDTNEAYCLFQDMIK------DGIVLNTWTYNFMIVG 404

Query: 330 RIQE----ALNLLYQVMPQRGY-----SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI 380
            I++    +  +L++ M Q G      +P + TY  ++  L +  +VEEA ++ + M   
Sbjct: 405 FIKDEAWSSAWMLFKRM-QSGKNDKVPAPNMFTYEILISSLCKTDQVEEAFKLLSAMRDK 463

Query: 381 GVVADSTTYAIVIDGLCESNQLDEAKRFWDD--------IVWPSNIHDNYVYAAMIKGLC 432
           G V     + +++  L  + +LD+A   + +        +V  SNI        ++ G+ 
Sbjct: 464 GFVPSLKIWEVLLSRLARAGRLDDAFELYKEMSRINCQQLVGSSNI--------LLDGIL 515

Query: 433 RSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD 490
           R G + EA  FL ++ D+G+ P+   Y+ ++ G C      +A +++ E+ ++G  P+
Sbjct: 516 RRGSVDEAKDFLKQMTDTGIVPDKFTYDKLVVGLCWQGKADQARKLVEELVRDGKRPE 573



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 136/538 (25%), Positives = 243/538 (45%), Gaps = 58/538 (10%)

Query: 4   LCGLSR---VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           L GL R   + EA +LF  M SRG  P+VV+Y T+I G C+  ++D A  + + M+   V
Sbjct: 121 LSGLWRARKIHEARELFRSMNSRGCKPDVVTYNTMIAGLCKWKKLDEAVFLLERMKQEDV 180

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P  +TY+ L+  + +   +++A    ++++E+M E    +    A++ L + L R G +
Sbjct: 181 SPTFVTYTTLIDHLCKFTRLQQA----YEVFEKMAEGP-CACTEPAYSVLFNKLQRAGKL 235

Query: 121 NEVFRIAEDMPQ-----------------------------------GKSVNEEF-ACGH 144
            E  R+  DM +                                   GK +  +F A   
Sbjct: 236 VEASRVYSDMCRKNVCMTDNTYSLVVLGLSKMDGGNVEAAKLVTEMMGKKIAPDFYAYSI 295

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
           +I+ LC++ R   A  +   MR RG++P++V+YN+++ GL        A +L    +  G
Sbjct: 296 LINGLCKARRPGEAKEMFQEMRGRGISPTVVTYNTLLEGLLSTAKLQDAMELTYFMLDQG 355

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL 264
            LP   +Y +++ G C   D  +A  + Q M+    V  T   N  +  +  IK+     
Sbjct: 356 RLPDTCSYNLMIRGFCANGDTNEAYCLFQDMIKDGIVLNTWTYNFMI--VGFIKDEAWSS 413

Query: 265 NVLVFMLQTQCQ------PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTF 318
             ++F      +      P++ T   +I+  CK  ++EEA K+L+ M    F  P    +
Sbjct: 414 AWMLFKRMQSGKNDKVPAPNMFTYEILISSLCKTDQVEEAFKLLSAMRDKGF-VPSLKIW 472

Query: 319 TTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCML 378
             ++  L   GR+ +A  L Y+ M +      + + N +L G+ R   V+EAK+    M 
Sbjct: 473 EVLLSRLARAGRLDDAFEL-YKEMSRINCQQLVGSSNILLDGILRRGSVDEAKDFLKQMT 531

Query: 379 GIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIH 438
             G+V D  TY  ++ GLC   + D+A++  +++V      +N     ++  LC  G   
Sbjct: 532 DTGIVPDKFTYDKLVVGLCWQGKADQARKLVEELVRDGKRPENQGLRQLLGALCAQGDFQ 591

Query: 439 EAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRI 496
            A  F   L   GV   +  +N ++   C L+ K +   ++ +  + G+ PD +  RI
Sbjct: 592 GAYEFYCWLPSVGVEVTLGMHNTLVTSCC-LARKLDYLDMIEQ--REGV-PDVIVERI 645



 Score = 43.9 bits (102), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 59/153 (38%), Gaps = 40/153 (26%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRH--- 57
           +  LC   +V EA KL   M+ +G VP++  +  L+    R G +D A++++ EM     
Sbjct: 441 ISSLCKTDQVEEAFKLLSAMRDKGFVPSLKIWEVLLSRLARAGRLDDAFELYKEMSRINC 500

Query: 58  --------------------------------CGVLPNSLTYSVLVRGVLRTRDVERANV 85
                                            G++P+  TY  LV G+      ++A  
Sbjct: 501 QQLVGSSNILLDGILRRGSVDEAKDFLKQMTDTGIVPDKFTYDKLVVGLCWQGKADQARK 560

Query: 86  LMFKLWERMKEEEDLSVNNAAFANLVDSLCREG 118
           L+ +L    K  E     N     L+ +LC +G
Sbjct: 561 LVEELVRDGKRPE-----NQGLRQLLGALCAQG 588


>gi|225447872|ref|XP_002269015.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Vitis vinifera]
          Length = 656

 Score =  185 bits (469), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 135/506 (26%), Positives = 245/506 (48%), Gaps = 11/506 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDM---KSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRH 57
           + Q+ G +R+    +LF ++   + R  V + + +  L+   C     D A+K F  M+ 
Sbjct: 149 LKQVMG-TRIATNRELFDELTLSRDRLSVKSSIVFDLLVRVCCELRRADEAFKCFYMMKE 207

Query: 58  CGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCRE 117
            G++P   T + ++   L+   +E A VL  +++ R++    +S     F  +V+ LC+E
Sbjct: 208 KGIVPKIETCNDMLSLFLKLNRMEMAWVLYAEMF-RLR----ISSTVYTFNIMVNVLCKE 262

Query: 118 GYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
           G + +       M          +   +I      G   GA R++  MR +G+ P   +Y
Sbjct: 263 GKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTY 322

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
            S++ G+CK G    A  L ++ ++ G +P+  TY  L++G C + DLE+A      M+ 
Sbjct: 323 GSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVK 382

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
           K  +      N+ + AL +     E  +++  M +    PD IT N +ING+ + G  ++
Sbjct: 383 KGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKK 442

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           A  + N+M++ K   P  VT+T++I+ L    R++EA +L  +++ Q G SP ++ +NA+
Sbjct: 443 AFDLHNEMLS-KGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQ-GVSPDVIMFNAM 500

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 417
           + G      VE A  +   M    V  D  T+  ++ G C   +++EA+   D++     
Sbjct: 501 VDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGI 560

Query: 418 IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQ 477
             D+  Y  +I G  R G I +A     E++  G  P ++ YN +I   CK      A +
Sbjct: 561 KPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEE 620

Query: 478 ILREMRKNGLNPDAVTWRILDKLHGN 503
           +L+EM   G++PD  T+  L +  GN
Sbjct: 621 LLKEMVNKGISPDDSTYLSLIEGMGN 646



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 109/401 (27%), Positives = 204/401 (50%), Gaps = 7/401 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   ++ +A +    M+  G  PNVVSY T+IHGY   G ++ A ++ D MR  G+ P+
Sbjct: 259 LCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPD 318

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           S TY  L+ G+ +   +E A+ L  K+ E       L  N   +  L+D  C +G +   
Sbjct: 319 SYTYGSLISGMCKEGRLEEASGLFDKMVEI-----GLVPNAVTYNTLIDGYCNKGDLERA 373

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           F   ++M +   +        ++ +L   GR   A  ++  MRK+G+ P  ++YN +++G
Sbjct: 374 FSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILING 433

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
             + G   +A+ L  E +  G  P+  TY  L+  L   + +++A  + + +L +     
Sbjct: 434 YSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPD 493

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
             + N  +   C   N      +L  M +    PD +T NT++ G C+ G++EEA  +L+
Sbjct: 494 VIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLD 553

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           +M   +   PD +++ T+I G    G I++A  +  +++   G++P ++TYNA+++ L +
Sbjct: 554 EM-KRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEML-SIGFNPTLLTYNALIKCLCK 611

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 404
            +  + A+E+   M+  G+  D +TY  +I+G+   + L E
Sbjct: 612 NQEGDLAEELLKEMVNKGISPDDSTYLSLIEGMGNVDTLVE 652



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 85/352 (24%), Positives = 163/352 (46%), Gaps = 20/352 (5%)

Query: 170 LTPSLVSYNSIVHGLCK------------HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVE 217
           LTP+L+S  ++++ LC             H  C+         +    LPS      L++
Sbjct: 93  LTPALIS--NVLYNLCSKPQLVSDFIHHLHPHCLDTKSYCLAVVLLARLPSPKLALQLLK 150

Query: 218 GLCGESDLEKARKVLQFMLSKKD---VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQ 274
            + G + +   R++   +   +D   V  + + ++ +R  C ++   E       M +  
Sbjct: 151 QVMG-TRIATNRELFDELTLSRDRLSVKSSIVFDLLVRVCCELRRADEAFKCFYMMKEKG 209

Query: 275 CQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEA 334
             P + T N +++ F K+ R+E A  +  +M   +  +    TF  ++  L   G++++A
Sbjct: 210 IVPKIETCNDMLSLFLKLNRMEMAWVLYAEMFRLRISS-TVYTFNIMVNVLCKEGKLKKA 268

Query: 335 LNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVID 394
              +   M   G+ P +V+YN ++ G      +E A+ + + M   G+  DS TY  +I 
Sbjct: 269 REFI-GFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLIS 327

Query: 395 GLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTP 454
           G+C+  +L+EA   +D +V    + +   Y  +I G C  G +  A  +  E+V  G+ P
Sbjct: 328 GMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMP 387

Query: 455 NIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           ++  YN+++          EA  +++EMRK G+ PDA+T+ IL   +   GN
Sbjct: 388 SVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGN 439


>gi|224111844|ref|XP_002316000.1| predicted protein [Populus trichocarpa]
 gi|222865040|gb|EEF02171.1| predicted protein [Populus trichocarpa]
          Length = 745

 Score =  185 bits (469), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 136/563 (24%), Positives = 248/563 (44%), Gaps = 68/563 (12%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LCG SR  +A         +   P+VVS+ T++  YC+ G  DVA   F  M   G+
Sbjct: 157 VDGLCGQSRFRDAVLFLRQNDGKEFAPSVVSFNTIMSRYCKLGLADVAKSFFCMMLKYGI 216

Query: 61  LPNSLTYSVLVRGVL----------RTRDVER----ANVLMFKL---------------- 90
           LP++ +Y++L+ G++           T D+E+     +++ +K+                
Sbjct: 217 LPDTYSYNILIHGLIVAGSMEEALELTNDMEKQGLQPDMVTYKIVAKGFHLLGLMSGARE 276

Query: 91  -WERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSL 149
             ++M  +E L  +   +  L+   C+ G + E  R+  D+              ++ SL
Sbjct: 277 IIQKMLTDEGLKPDLVTYTVLICGHCQMGNIEEALRLRRDLLSSGFQLNVILYSVLLSSL 336

Query: 150 CRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSE 209
           C+ G+   A +++Y M    L P LV+Y+ ++HGLCK G   +A QL +E       P+ 
Sbjct: 337 CKRGQVDEALQLLYEMEANNLQPDLVTYSILIHGLCKQGKVQQAIQLYKEMCFNRIFPNS 396

Query: 210 HTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVF 269
             +  +++GLC +  L  AR     ++         + NI +     + +  E + +   
Sbjct: 397 FAHSGILKGLCEKGMLSDARMYFDSLIMSNLRPDVTLYNIMIDGYVKLGDVEEAVRLYKR 456

Query: 270 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG 329
           +      P ++T N++I GFCK  ++ EA ++L  +       P AVT+TT++      G
Sbjct: 457 LRDKAITPSIVTFNSLIYGFCKNRKVVEARRLLESIKLHGL-EPSAVTYTTLMNAYCEEG 515

Query: 330 RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTY 389
            I +   LL + M  +   P +VTY  V++GL + R++EE+ ++   M   G+  D  TY
Sbjct: 516 NINKLHELLLE-MNLKDIEPTVVTYTVVIKGLCKQRKLEESVQLLEDMRAKGLAPDQITY 574

Query: 390 AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEA--------- 440
             +I   C++  + +A    DD++  +       Y  +I GLCR G + +A         
Sbjct: 575 NTIIQCFCKAKDMRKAFELLDDMLIHNLEPTPATYNVLIDGLCRYGDVEDADRVLVSLQD 634

Query: 441 --------------------------VHFLYELVDSGVTPNIVCYNVVIDGACKLSMKRE 474
                                     V   +++V+ G   +I  Y+ VI+  CK  +  E
Sbjct: 635 RNINLTKVAYTTMIKAHCVKGDAQRAVKVFHQMVEKGFEVSIKDYSAVINRLCKRCLINE 694

Query: 475 AYQILREMRKNGLNPDAVTWRIL 497
           A      M  +G++PD   + ++
Sbjct: 695 AKYYFCIMLSDGVSPDQEIFEMM 717



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 123/500 (24%), Positives = 230/500 (46%), Gaps = 85/500 (17%)

Query: 10  VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSV 69
           V +A  +   MK +   P++ +Y +L++    T   D+ + V+++++  G   ++ T S+
Sbjct: 99  VHDALFVLVKMKEQNLRPSIQTYNSLLYNLRHT---DIMWDVYNDIKDSGTPQSARTSSI 155

Query: 70  LVRGVL---RTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRI 126
           +V G+    R RD          L+ R  + ++ + +  +F  ++   C+ G  +     
Sbjct: 156 IVDGLCGQSRFRDA--------VLFLRQNDGKEFAPSVVSFNTIMSRYCKLGLAD----- 202

Query: 127 AEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK 186
                    V + F C                     +M K G+ P   SYN ++HGL  
Sbjct: 203 ---------VAKSFFC---------------------MMLKYGILPDTYSYNILIHGLIV 232

Query: 187 HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRI 246
            G    A +L  +  + G  P   TYK++ +G      +  AR+++Q ML+ + +     
Sbjct: 233 AGSMEEALELTNDMEKQGLQPDMVTYKIVAKGFHLLGLMSGAREIIQKMLTDEGL----- 287

Query: 247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV 306
                                        +PD++T   +I G C+MG IEEAL++  D++
Sbjct: 288 -----------------------------KPDLVTYTVLICGHCQMGNIEEALRLRRDLL 318

Query: 307 AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 366
           +  F   + + ++ ++  L   G++ EAL LLY+ M      P +VTY+ ++ GL +  +
Sbjct: 319 SSGF-QLNVILYSVLLSSLCKRGQVDEALQLLYE-MEANNLQPDLVTYSILIHGLCKQGK 376

Query: 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAA 426
           V++A +++  M    +  +S  ++ ++ GLCE   L +A+ ++D ++  +   D  +Y  
Sbjct: 377 VQQAIQLYKEMCFNRIFPNSFAHSGILKGLCEKGMLSDARMYFDSLIMSNLRPDVTLYNI 436

Query: 427 MIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG 486
           MI G  + G + EAV     L D  +TP+IV +N +I G CK     EA ++L  ++ +G
Sbjct: 437 MIDGYVKLGDVEEAVRLYKRLRDKAITPSIVTFNSLIYGFCKNRKVVEARRLLESIKLHG 496

Query: 487 LNPDAVTWRILDKLHGNRGN 506
           L P AVT+  L   +   GN
Sbjct: 497 LEPSAVTYTTLMNAYCEEGN 516



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 115/449 (25%), Positives = 220/449 (48%), Gaps = 9/449 (2%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C +  + EA +L  D+ S G   NV+ Y+ L+   C+ G++D A ++  EM    + P+ 
Sbjct: 302 CQMGNIEEALRLRRDLLSSGFQLNVILYSVLLSSLCKRGQVDEALQLLYEMEANNLQPDL 361

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           +TYS+L+ G+ +   V++A     +L++ M     +  N+ A + ++  LC +G +++  
Sbjct: 362 VTYSILIHGLCKQGKVQQA----IQLYKEMCFNR-IFPNSFAHSGILKGLCEKGMLSDAR 416

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
              + +       +      MID   + G    A R+   +R + +TPS+V++NS+++G 
Sbjct: 417 MYFDSLIMSNLRPDVTLYNIMIDGYVKLGDVEEAVRLYKRLRDKAITPSIVTFNSLIYGF 476

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
           CK+   + A +LLE     G  PS  TY  L+   C E ++ K  ++L   ++ KD++ T
Sbjct: 477 CKNRKVVEARRLLESIKLHGLEPSAVTYTTLMNAYCEEGNINKLHELL-LEMNLKDIEPT 535

Query: 245 RIC-NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
            +   + ++ LC  +   E + +L  M      PD IT NT+I  FCK   + +A ++L+
Sbjct: 536 VVTYTVVIKGLCKQRKLEESVQLLEDMRAKGLAPDQITYNTIIQCFCKAKDMRKAFELLD 595

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           DM+      P   T+  +I GL   G +++A  +L   +  R  +   V Y  +++    
Sbjct: 596 DMLIHNL-EPTPATYNVLIDGLCRYGDVEDADRVLVS-LQDRNINLTKVAYTTMIKAHCV 653

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
               + A +VF+ M+  G       Y+ VI+ LC+   ++EAK ++  ++      D  +
Sbjct: 654 KGDAQRAVKVFHQMVEKGFEVSIKDYSAVINRLCKRCLINEAKYYFCIMLSDGVSPDQEI 713

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGV 452
           +  M+    R+G +H     L  ++  G+
Sbjct: 714 FEMMLNAFHRAGHVHSVFELLAVMIKFGL 742



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 111/441 (25%), Positives = 205/441 (46%), Gaps = 45/441 (10%)

Query: 98  EDLSVNNAAFANLVDSLCREGYVNEVFRIAEDM------PQGKSVNEEFACGHMIDSLCR 151
           E+LSV NA F      L R  +  +  R++  +       + +  +       M+     
Sbjct: 36  ENLSVQNADFVADFYHLSRNEFGFQHSRVSRFLVSHVLARKRRFKDLRLVLDQMLQEEVA 95

Query: 152 SGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHT 211
           S   H A  V+  M+++ L PS+ +YNS+++ L +H   M  + +  +    G   S  T
Sbjct: 96  SRMVHDALFVLVKMKEQNLRPSIQTYNSLLYNL-RHTDIM--WDVYNDIKDSGTPQSART 152

Query: 212 YKVLVEGLCGESDL-------------EKARKVLQF--------MLSKKDVDRTRIC--- 247
             ++V+GLCG+S               E A  V+ F         L   DV ++  C   
Sbjct: 153 SSIIVDGLCGQSRFRDAVLFLRQNDGKEFAPSVVSFNTIMSRYCKLGLADVAKSFFCMML 212

Query: 248 -----------NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIE 296
                      NI +  L +  +  E L +   M +   QPD++T   V  GF  +G + 
Sbjct: 213 KYGILPDTYSYNILIHGLIVAGSMEEALELTNDMEKQGLQPDMVTYKIVAKGFHLLGLMS 272

Query: 297 EALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
            A +++  M+  +   PD VT+T +I G   +G I+EAL L   ++   G+   ++ Y+ 
Sbjct: 273 GAREIIQKMLTDEGLKPDLVTYTVLICGHCQMGNIEEALRLRRDLLSS-GFQLNVILYSV 331

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416
           +L  L +  +V+EA ++   M    +  D  TY+I+I GLC+  ++ +A + + ++ +  
Sbjct: 332 LLSSLCKRGQVDEALQLLYEMEANNLQPDLVTYSILIHGLCKQGKVQQAIQLYKEMCFNR 391

Query: 417 NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAY 476
              +++ ++ ++KGLC  G + +A  +   L+ S + P++  YN++IDG  KL    EA 
Sbjct: 392 IFPNSFAHSGILKGLCEKGMLSDARMYFDSLIMSNLRPDVTLYNIMIDGYVKLGDVEEAV 451

Query: 477 QILREMRKNGLNPDAVTWRIL 497
           ++ + +R   + P  VT+  L
Sbjct: 452 RLYKRLRDKAITPSIVTFNSL 472



 Score = 42.0 bits (97), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 59/126 (46%), Gaps = 5/126 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    V +A ++   ++ R      V+YTT+I  +C  G+   A KVF +M   G 
Sbjct: 613 IDGLCRYGDVEDADRVLVSLQDRNINLTKVAYTTMIKAHCVKGDAQRAVKVFHQMVEKGF 672

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             +   YS ++      R  +R  +   K +  +   + +S +   F  ++++  R G+V
Sbjct: 673 EVSIKDYSAVI-----NRLCKRCLINEAKYYFCIMLSDGVSPDQEIFEMMLNAFHRAGHV 727

Query: 121 NEVFRI 126
           + VF +
Sbjct: 728 HSVFEL 733


>gi|356566887|ref|XP_003551657.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Glycine max]
          Length = 525

 Score =  185 bits (469), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 143/489 (29%), Positives = 227/489 (46%), Gaps = 11/489 (2%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVL-PNSLTYSVL 70
           +A   F  M      P++VS   L+    +T        +   +   G   P+ +T S+ 
Sbjct: 38  DAVSTFHRMLHLHPPPSIVSLNKLLSSIMKTKHYPTVVSLCSHLDSKGTPKPSLVTLSIF 97

Query: 71  VRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDM 130
           +  +     +  A  +M K+ +R        V+      L+  LC +G   E   + +  
Sbjct: 98  INSLTHLGQMGLAFSVMAKIVKR-----GFGVDPFTLTTLMKGLCLKGRTFEALNLYDHA 152

Query: 131 PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGC 190
                  +E   G +I+ LC+ G+   A  ++  M K G+ P+L+ YN +V GLCK G  
Sbjct: 153 VSKGFSFDEVCYGTLINGLCKMGKTRDAIELLRKMEKGGVRPNLIMYNMVVDGLCKEGLV 212

Query: 191 MRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV-DRTRICNI 249
             A  L  E +  G      TY  L+ G CG    + A ++L  M+ K+DV       NI
Sbjct: 213 TEACGLCSEMVGKGICIDVFTYNSLIHGFCGAGQFQGAVRLLNEMVMKEDVRPDVYTFNI 272

Query: 250 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA-G 308
            + ALC +    E  NV   M++   +PDV++ N ++NG+C  G + EA +V + MV  G
Sbjct: 273 LVDALCKLGMVAEARNVFGLMIKRGLEPDVVSCNALMNGWCLRGCMSEAKEVFDRMVERG 332

Query: 309 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE 368
           K   P+ ++++T+I G   V  + EAL LL + M QR   P  VTYN +L GL +  RV 
Sbjct: 333 KL--PNVISYSTLINGYCKVKMVDEALRLLTE-MHQRNLVPDTVTYNCLLDGLSKSGRVL 389

Query: 369 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI 428
              ++   M   G   D  TY +++D   +   LD+A   +  IV      +   Y  +I
Sbjct: 390 YEWDLVEAMRASGQAPDLITYNVLLDDYLKRECLDKALALFQHIVDTGISPNIRTYNILI 449

Query: 429 KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLN 488
            GLC+ G++  A      L   G  PNI  YN++I+G  +  +  EA  +L EM  +G  
Sbjct: 450 DGLCKGGRMKAAKEIFQLLSVKGCRPNIRTYNIMINGLRREGLLDEAEALLLEMVDDGFP 509

Query: 489 PDAVTWRIL 497
           P+AVT+  L
Sbjct: 510 PNAVTFDPL 518



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 118/439 (26%), Positives = 215/439 (48%), Gaps = 10/439 (2%)

Query: 27  PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGV-LRTRDVERANV 85
           P++V+ +  I+     G+M +A+ V  ++   G   +  T + L++G+ L+ R  E  N 
Sbjct: 89  PSLVTLSIFINSLTHLGQMGLAFSVMAKIVKRGFGVDPFTLTTLMKGLCLKGRTFEALN- 147

Query: 86  LMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHM 145
               L++     +  S +   +  L++ LC+ G   +   +   M +G           +
Sbjct: 148 ----LYDH-AVSKGFSFDEVCYGTLINGLCKMGKTRDAIELLRKMEKGGVRPNLIMYNMV 202

Query: 146 IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGI-QFG 204
           +D LC+ G    A  +   M  +G+   + +YNS++HG C  G    A +LL E + +  
Sbjct: 203 VDGLCKEGLVTEACGLCSEMVGKGICIDVFTYNSLIHGFCGAGQFQGAVRLLNEMVMKED 262

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL 264
             P  +T+ +LV+ LC    + +AR V   M+ +        CN  +   CL    +E  
Sbjct: 263 VRPDVYTFNILVDALCKLGMVAEARNVFGLMIKRGLEPDVVSCNALMNGWCLRGCMSEAK 322

Query: 265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 324
            V   M++    P+VI+ +T+ING+CK+  ++EAL++L +M   +   PD VT+  ++ G
Sbjct: 323 EVFDRMVERGKLPNVISYSTLINGYCKVKMVDEALRLLTEM-HQRNLVPDTVTYNCLLDG 381

Query: 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 384
           L   GR+    +L+ + M   G +P ++TYN +L    +   +++A  +F  ++  G+  
Sbjct: 382 LSKSGRVLYEWDLV-EAMRASGQAPDLITYNVLLDDYLKRECLDKALALFQHIVDTGISP 440

Query: 385 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFL 444
           +  TY I+IDGLC+  ++  AK  +  +       +   Y  MI GL R G + EA   L
Sbjct: 441 NIRTYNILIDGLCKGGRMKAAKEIFQLLSVKGCRPNIRTYNIMINGLRREGLLDEAEALL 500

Query: 445 YELVDSGVTPNIVCYNVVI 463
            E+VD G  PN V ++ ++
Sbjct: 501 LEMVDDGFPPNAVTFDPLV 519



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 121/493 (24%), Positives = 221/493 (44%), Gaps = 77/493 (15%)

Query: 41  RTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDL 100
           +T   D A   F  M H    P+ ++ + L+  +++T+       L   L  +   +  L
Sbjct: 32  KTPTFDDAVSTFHRMLHLHPPPSIVSLNKLLSSIMKTKHYPTVVSLCSHLDSKGTPKPSL 91

Query: 101 SVNNAAFANLVDSLCREGYVNEVFRI-AEDMPQGKSVNEEFACGHMIDSLCRSGRNHGAS 159
                  +  ++SL   G +   F + A+ + +G  V + F    ++  LC  GR   A 
Sbjct: 92  ----VTLSIFINSLTHLGQMGLAFSVMAKIVKRGFGV-DPFTLTTLMKGLCLKGRTFEAL 146

Query: 160 RVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGL 219
            +      +G +   V Y ++++GLCK G    A +LL +  + G  P+   Y ++V+GL
Sbjct: 147 NLYDHAVSKGFSFDEVCYGTLINGLCKMGKTRDAIELLRKMEKGGVRPNLIMYNMVVDGL 206

Query: 220 CGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDV 279
           C E  + +A  +   M+ K               +C+                     DV
Sbjct: 207 CKEGLVTEACGLCSEMVGK--------------GICI---------------------DV 231

Query: 280 ITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLY 339
            T N++I+GFC  G+ + A+++LN+MV  +   PD  TF  ++  L  +G + EA N+ +
Sbjct: 232 FTYNSLIHGFCGAGQFQGAVRLLNEMVMKEDVRPDVYTFNILVDALCKLGMVAEARNV-F 290

Query: 340 QVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCES 399
            +M +RG  P +V+ NA++ G      + EAKEVF+ M+  G + +  +Y+ +I+G C+ 
Sbjct: 291 GLMIKRGLEPDVVSCNALMNGWCLRGCMSEAKEVFDRMVERGKLPNVISYSTLINGYCKV 350

Query: 400 NQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKI---------------------- 437
             +DEA R   ++   + + D   Y  ++ GL +SG++                      
Sbjct: 351 KMVDEALRLLTEMHQRNLVPDTVTYNCLLDGLSKSGRVLYEWDLVEAMRASGQAPDLITY 410

Query: 438 -------------HEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484
                         +A+     +VD+G++PNI  YN++IDG CK    + A +I + +  
Sbjct: 411 NVLLDDYLKRECLDKALALFQHIVDTGISPNIRTYNILIDGLCKGGRMKAAKEIFQLLSV 470

Query: 485 NGLNPDAVTWRIL 497
            G  P+  T+ I+
Sbjct: 471 KGCRPNIRTYNIM 483



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 107/397 (26%), Positives = 181/397 (45%), Gaps = 43/397 (10%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M  LC   R  EA  L+    S+G   + V Y TLI+G C+ G+   A ++  +M   GV
Sbjct: 133 MKGLCLKGRTFEALNLYDHAVSKGFSFDEVCYGTLINGLCKMGKTRDAIELLRKMEKGGV 192

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN + Y+++V G+ +   V  A  L  ++  +      + ++   + +L+   C  G  
Sbjct: 193 RPNLIMYNMVVDGLCKEGLVTEACGLCSEMVGK-----GICIDVFTYNSLIHGFCGAGQF 247

Query: 121 NEVFRIAEDMPQGKSVNEE-FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
               R+  +M   + V  + +    ++D+LC+ G    A  V  +M KRGL P +VS N+
Sbjct: 248 QGAVRLLNEMVMKEDVRPDVYTFNILVDALCKLGMVAEARNVFGLMIKRGLEPDVVSCNA 307

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           +++G C  G    A ++ +  ++ G LP+  +Y  L+ G C                   
Sbjct: 308 LMNGWCLRGCMSEAKEVFDRMVERGKLPNVISYSTLINGYCK------------------ 349

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                            +K   E L +L  M Q    PD +T N +++G  K GR+    
Sbjct: 350 -----------------VKMVDEALRLLTEMHQRNLVPDTVTYNCLLDGLSKSGRVLYEW 392

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
            ++  M A    APD +T+  ++   L    + +AL  L+Q +   G SP I TYN ++ 
Sbjct: 393 DLVEAMRASGQ-APDLITYNVLLDDYLKRECLDKALA-LFQHIVDTGISPNIRTYNILID 450

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 396
           GL +  R++ AKE+F  +   G   +  TY I+I+GL
Sbjct: 451 GLCKGGRMKAAKEIFQLLSVKGCRPNIRTYNIMINGL 487



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 91/326 (27%), Positives = 142/326 (43%), Gaps = 76/326 (23%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC L  V EA  +F  M  RG  P+VVS   L++G+C  G M  A +VFD M   G 
Sbjct: 274 VDALCKLGMVAEARNVFGLMIKRGLEPDVVSCNALMNGWCLRGCMSEAKEVFDRMVERGK 333

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           LPN ++YS L+ G  + + V+ A  L+ ++ +R               NLV         
Sbjct: 334 LPNVISYSTLINGYCKVKMVDEALRLLTEMHQR---------------NLV--------- 369

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                     P   + N    C  ++D L +SGR      +V  MR  G  P L++YN +
Sbjct: 370 ----------PDTVTYN----C--LLDGLSKSGRVLYEWDLVEAMRASGQAPDLITYNVL 413

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +    K     +A  L +  +  G  P+  TY +L++GLC    ++ A+++ Q +  K  
Sbjct: 414 LDDYLKRECLDKALALFQHIVDTGISPNIRTYNILIDGLCKGGRMKAAKEIFQLLSVK-- 471

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                             C+P++ T N +ING  + G ++EA  
Sbjct: 472 ---------------------------------GCRPNIRTYNIMINGLRREGLLDEAEA 498

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLL 326
           +L +MV   F  P+AVTF  ++  LL
Sbjct: 499 LLLEMVDDGF-PPNAVTFDPLVRALL 523



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 86/191 (45%), Gaps = 2/191 (1%)

Query: 312 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK 371
            P  V+   ++  ++        ++L   +  +    P +VT +  +  L  L ++  A 
Sbjct: 52  PPSIVSLNKLLSSIMKTKHYPTVVSLCSHLDSKGTPKPSLVTLSIFINSLTHLGQMGLAF 111

Query: 372 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 431
            V   ++  G   D  T   ++ GLC   +  EA   +D  V      D   Y  +I GL
Sbjct: 112 SVMAKIVKRGFGVDPFTLTTLMKGLCLKGRTFEALNLYDHAVSKGFSFDEVCYGTLINGL 171

Query: 432 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 491
           C+ GK  +A+  L ++   GV PN++ YN+V+DG CK  +  EA  +  EM   G+  D 
Sbjct: 172 CKMGKTRDAIELLRKMEKGGVRPNLIMYNMVVDGLCKEGLVTEACGLCSEMVGKGICIDV 231

Query: 492 VTWRILDKLHG 502
            T+  L  +HG
Sbjct: 232 FTYNSL--IHG 240


>gi|296081530|emb|CBI20053.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  185 bits (469), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 135/506 (26%), Positives = 245/506 (48%), Gaps = 11/506 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDM---KSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRH 57
           + Q+ G +R+    +LF ++   + R  V + + +  L+   C     D A+K F  M+ 
Sbjct: 127 LKQVMG-TRIATNRELFDELTLSRDRLSVKSSIVFDLLVRVCCELRRADEAFKCFYMMKE 185

Query: 58  CGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCRE 117
            G++P   T + ++   L+   +E A VL  +++ R++    +S     F  +V+ LC+E
Sbjct: 186 KGIVPKIETCNDMLSLFLKLNRMEMAWVLYAEMF-RLR----ISSTVYTFNIMVNVLCKE 240

Query: 118 GYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
           G + +       M          +   +I      G   GA R++  MR +G+ P   +Y
Sbjct: 241 GKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTY 300

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
            S++ G+CK G    A  L ++ ++ G +P+  TY  L++G C + DLE+A      M+ 
Sbjct: 301 GSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVK 360

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
           K  +      N+ + AL +     E  +++  M +    PD IT N +ING+ + G  ++
Sbjct: 361 KGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKK 420

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           A  + N+M++ K   P  VT+T++I+ L    R++EA +L  +++ Q G SP ++ +NA+
Sbjct: 421 AFDLHNEMLS-KGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQ-GVSPDVIMFNAM 478

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 417
           + G      VE A  +   M    V  D  T+  ++ G C   +++EA+   D++     
Sbjct: 479 VDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGI 538

Query: 418 IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQ 477
             D+  Y  +I G  R G I +A     E++  G  P ++ YN +I   CK      A +
Sbjct: 539 KPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEE 598

Query: 478 ILREMRKNGLNPDAVTWRILDKLHGN 503
           +L+EM   G++PD  T+  L +  GN
Sbjct: 599 LLKEMVNKGISPDDSTYLSLIEGMGN 624



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 109/401 (27%), Positives = 204/401 (50%), Gaps = 7/401 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   ++ +A +    M+  G  PNVVSY T+IHGY   G ++ A ++ D MR  G+ P+
Sbjct: 237 LCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPD 296

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           S TY  L+ G+ +   +E A+ L  K+ E       L  N   +  L+D  C +G +   
Sbjct: 297 SYTYGSLISGMCKEGRLEEASGLFDKMVEI-----GLVPNAVTYNTLIDGYCNKGDLERA 351

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           F   ++M +   +        ++ +L   GR   A  ++  MRK+G+ P  ++YN +++G
Sbjct: 352 FSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILING 411

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
             + G   +A+ L  E +  G  P+  TY  L+  L   + +++A  + + +L +     
Sbjct: 412 YSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPD 471

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
             + N  +   C   N      +L  M +    PD +T NT++ G C+ G++EEA  +L+
Sbjct: 472 VIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLD 531

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           +M   +   PD +++ T+I G    G I++A  +  +++   G++P ++TYNA+++ L +
Sbjct: 532 EM-KRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEML-SIGFNPTLLTYNALIKCLCK 589

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 404
            +  + A+E+   M+  G+  D +TY  +I+G+   + L E
Sbjct: 590 NQEGDLAEELLKEMVNKGISPDDSTYLSLIEGMGNVDTLVE 630



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 85/352 (24%), Positives = 163/352 (46%), Gaps = 20/352 (5%)

Query: 170 LTPSLVSYNSIVHGLCK------------HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVE 217
           LTP+L+S  ++++ LC             H  C+         +    LPS      L++
Sbjct: 71  LTPALIS--NVLYNLCSKPQLVSDFIHHLHPHCLDTKSYCLAVVLLARLPSPKLALQLLK 128

Query: 218 GLCGESDLEKARKVLQFMLSKKD---VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQ 274
            + G + +   R++   +   +D   V  + + ++ +R  C ++   E       M +  
Sbjct: 129 QVMG-TRIATNRELFDELTLSRDRLSVKSSIVFDLLVRVCCELRRADEAFKCFYMMKEKG 187

Query: 275 CQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEA 334
             P + T N +++ F K+ R+E A  +  +M   +  +    TF  ++  L   G++++A
Sbjct: 188 IVPKIETCNDMLSLFLKLNRMEMAWVLYAEMFRLRISS-TVYTFNIMVNVLCKEGKLKKA 246

Query: 335 LNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVID 394
              +   M   G+ P +V+YN ++ G      +E A+ + + M   G+  DS TY  +I 
Sbjct: 247 REFI-GFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLIS 305

Query: 395 GLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTP 454
           G+C+  +L+EA   +D +V    + +   Y  +I G C  G +  A  +  E+V  G+ P
Sbjct: 306 GMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMP 365

Query: 455 NIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           ++  YN+++          EA  +++EMRK G+ PDA+T+ IL   +   GN
Sbjct: 366 SVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGN 417


>gi|297738031|emb|CBI27232.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  185 bits (469), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 131/487 (26%), Positives = 236/487 (48%), Gaps = 48/487 (9%)

Query: 31  SYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKL 90
           ++ +LI  Y  +G+    ++VFD M+    +     + ++ R   +    E+A     +L
Sbjct: 82  TFYSLIENYANSGDFGTLFQVFDRMKRERRVFIEKNFILVFRAYGKAHLPEKA----IEL 137

Query: 91  WERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKS--VNEEFACGHMIDS 148
           + RM +E        +F ++++ + +EG  +      E    GK+       +   +I +
Sbjct: 138 FGRMVDEFQCRRTVRSFNSVLNVIIQEGLFHRALEFYECGVGGKTNISPNVLSFNLVIKA 197

Query: 149 LCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPS 208
           +C+ G    A  V   M  +   P + +Y +++ GLCK      A  LL+E    G  PS
Sbjct: 198 MCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPS 257

Query: 209 EHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLV 268
             T+ VL+ GLC + D+ +  K++               N++L+                
Sbjct: 258 SVTFNVLINGLCKKGDMVRVTKLVD--------------NMFLKG--------------- 288

Query: 269 FMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNV 328
                 C P+ +T NT+ING C  G++++A+ +L+ MVA K C P+ VT+ T+I GL+  
Sbjct: 289 ------CVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASK-CVPNDVTYGTLINGLVKQ 341

Query: 329 GRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTT 388
           GR  + ++LL   + +RG+      Y+ ++ GLF+  + EEA  ++  M+  G   +   
Sbjct: 342 GRSVDGVHLLSS-LEERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVV 400

Query: 389 YAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELV 448
           Y+ +IDGLC   +LDEAK    ++V      + + Y+++IKG  ++G   +A+    E+ 
Sbjct: 401 YSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMA 460

Query: 449 DSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG--NRGN 506
            +   PN +CY+V+I G C+    REA  +   M   GL PD V +  +  +HG  N G+
Sbjct: 461 KNNCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSM--IHGLCNAGS 518

Query: 507 -DFGLRI 512
            + GL++
Sbjct: 519 VEVGLKL 525



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 113/427 (26%), Positives = 215/427 (50%), Gaps = 8/427 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           +C L  V  A ++F +M  +   P+V +Y TL+ G C+   +D A  + DEM+  G  P+
Sbjct: 198 MCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPS 257

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           S+T++VL+ G+ +  D+ R   L+  ++ +         N   +  +++ LC +G +++ 
Sbjct: 258 SVTFNVLINGLCKKGDMVRVTKLVDNMFLK-----GCVPNEVTYNTIINGLCLKGKLDKA 312

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             + + M   K V  +   G +I+ L + GR+     ++  + +RG   +  +Y++++ G
Sbjct: 313 VSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYSTLISG 372

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           L K      A  L ++ ++ G  P+   Y  L++GLC E  L++A+++L  M++K     
Sbjct: 373 LFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPN 432

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               +  ++      N  + + V   M +  C P+ I  + +I+G C+ G++ EA+ +  
Sbjct: 433 AFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWT 492

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYS-PGIVTYNAVLRGLF 362
            M+ G+   PD V ++++I GL N G ++  L L  +++ Q   S P +VTYN +LR L 
Sbjct: 493 HML-GRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRALC 551

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCES-NQLDEAKRFWDDIVWPSNIHDN 421
           +   +  A ++ N ML  G   D  T  I ++ L E  N   + + F D++V   +    
Sbjct: 552 KQNSISHAIDLLNSMLDRGCNPDLITCNIFLNALREKLNPPQDGREFLDELVVRLHKRQR 611

Query: 422 YVYAAMI 428
            V AA I
Sbjct: 612 IVGAAKI 618



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 122/498 (24%), Positives = 235/498 (47%), Gaps = 66/498 (13%)

Query: 27  PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVL 86
           PNV+S+  +I   C+ G +D A +VF EM      P+  TY  L+ G+ +   ++ A +L
Sbjct: 186 PNVLSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLL 245

Query: 87  MFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMI 146
           + ++     + E    ++  F  L++ LC++G +  V ++ ++M     V  E     +I
Sbjct: 246 LDEM-----QIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTII 300

Query: 147 DSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL 206
           + LC  G+   A  ++  M      P+ V+Y ++++GL K G  +    LL    + G+ 
Sbjct: 301 NGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHH 360

Query: 207 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 266
            +E+ Y  L+ GL  E   E+A  + + M+ K                            
Sbjct: 361 ANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKG--------------------------- 393

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
                   CQP+++  + +I+G C+ G+++EA ++L +MV  K C P+A T++++I G  
Sbjct: 394 --------CQPNIVVYSALIDGLCREGKLDEAKEILCEMV-NKGCTPNAFTYSSLIKGFF 444

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
             G  Q+A+  +++ M +    P  + Y+ ++ GL    ++ EA  ++  MLG G+  D 
Sbjct: 445 KTGNSQKAIR-VWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDV 503

Query: 387 TTYAIVIDGLCESNQLDEAKRFWDDIVW--PSNIHDNYVYAAMIKGLCRSGKIHEAVHFL 444
             Y+ +I GLC +  ++   + +++++     +  D   Y  +++ LC+   I  A+  L
Sbjct: 504 VAYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRALCKQNSISHAIDLL 563

Query: 445 YELVDSGVTPNIVCYNVVI-----------DGACKLS------MKRE----AYQILREMR 483
             ++D G  P+++  N+ +           DG   L        KR+    A +I+  M 
Sbjct: 564 NSMLDRGCNPDLITCNIFLNALREKLNPPQDGREFLDELVVRLHKRQRIVGAAKIIEVML 623

Query: 484 KNGLNPDAVTW-RILDKL 500
           +  L P+A TW RI+ +L
Sbjct: 624 QKFLPPNASTWERIIPEL 641



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 111/426 (26%), Positives = 208/426 (48%), Gaps = 32/426 (7%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           MD LC   R+ EA  L  +M+  G  P+ V++  LI+G C+ G+M    K+ D M   G 
Sbjct: 230 MDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGC 289

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREG-Y 119
           +PN +TY+ ++ G+     +++A      L +RM   + +  N+  +  L++ L ++G  
Sbjct: 290 VPNEVTYNTIINGLCLKGKLDKA----VSLLDRMVASKCVP-NDVTYGTLINGLVKQGRS 344

Query: 120 VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           V+ V  ++    +G   N E+A   +I  L +  ++  A  +   M ++G  P++V Y++
Sbjct: 345 VDGVHLLSSLEERGHHAN-EYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSA 403

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++ GLC+ G    A ++L E +  G  P+  TY  L++G     + +KA +V + M +K 
Sbjct: 404 LIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEM-AKN 462

Query: 240 DVDRTRIC-NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
           +     IC ++ +  LC      E + +   ML    +PDV+  +++I+G C  G +E  
Sbjct: 463 NCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVG 522

Query: 299 LKVLNDMVAGKF-CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           LK+ N+M+  +    PD VT+  ++  L     I  A++LL   M  RG +P ++T N  
Sbjct: 523 LKLFNEMLCQESDSQPDVVTYNILLRALCKQNSISHAIDLL-NSMLDRGCNPDLITCNIF 581

Query: 358 LRG---------------------LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 396
           L                       L + +R+  A ++   ML   +  +++T+  +I  L
Sbjct: 582 LNALREKLNPPQDGREFLDELVVRLHKRQRIVGAAKIIEVMLQKFLPPNASTWERIIPEL 641

Query: 397 CESNQL 402
           C+  ++
Sbjct: 642 CKPKKV 647


>gi|334182559|ref|NP_001184987.1| PPR repeat-containing protein [Arabidopsis thaliana]
 gi|332190929|gb|AEE29050.1| PPR repeat-containing protein [Arabidopsis thaliana]
          Length = 798

 Score =  185 bits (469), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 144/507 (28%), Positives = 237/507 (46%), Gaps = 32/507 (6%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M   C L  V  A   F  +   G VP+V S+  LI+G C  G +  A ++  +M   GV
Sbjct: 229 MSGYCKLGFVDMAKSFFCTVLKCGLVPSVYSHNILINGLCLVGSIAEALELASDMNKHGV 288

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKE--EEDLSVNNAAFANLVDSLCREG 118
            P+S+TY++L +G      +  A       WE +++  ++ LS +   +  L+   C+ G
Sbjct: 289 EPDSVTYNILAKGFHLLGMISGA-------WEVIRDMLDKGLSPDVITYTILLCGQCQLG 341

Query: 119 YVNEVFRIAEDM-PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
            ++    + +DM  +G  +N    C  M+  LC++GR   A  +   M+  GL+P LV+Y
Sbjct: 342 NIDMGLVLLKDMLSRGFELNSIIPCSVMLSGLCKTGRIDEALSLFNQMKADGLSPDLVAY 401

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
           + ++HGLCK G    A  L +E      LP+  T+  L+ GLC +  L +AR +L  ++S
Sbjct: 402 SIVIHGLCKLGKFDMALWLYDEMCDKRILPNSRTHGALLLGLCQKGMLLEARSLLDSLIS 461

Query: 238 KKDVDRTRICNI----YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMG 293
             +     + NI    Y ++ C I+   EL  V++   +T   P V T N++I G+CK  
Sbjct: 462 SGETLDIVLYNIVIDGYAKSGC-IEEALELFKVVI---ETGITPSVATFNSLIYGYCKTQ 517

Query: 294 RIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVT 353
            I EA K+L D++     AP  V++TT++    N G  + +++ L + M   G  P  VT
Sbjct: 518 NIAEARKIL-DVIKLYGLAPSVVSYTTLMDAYANCGNTK-SIDELRREMKAEGIPPTNVT 575

Query: 354 YNAVLRGL------------FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ 401
           Y+ + +GL             R R  E+ K+    M   G+  D  TY  +I  LC    
Sbjct: 576 YSVIFKGLCRGWKHENCNHVLRERIFEKCKQGLRDMESEGIPPDQITYNTIIQYLCRVKH 635

Query: 402 LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNV 461
           L  A  F + +   +    +  Y  +I  LC  G I +A  F+Y L +  V+ +   Y  
Sbjct: 636 LSGAFVFLEIMKSRNLDASSATYNILIDSLCVYGYIRKADSFIYSLQEQNVSLSKFAYTT 695

Query: 462 VIDGACKLSMKREAYQILREMRKNGLN 488
           +I   C       A ++  ++   G N
Sbjct: 696 LIKAHCVKGDPEMAVKLFHQLLHRGFN 722



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 115/416 (27%), Positives = 211/416 (50%), Gaps = 11/416 (2%)

Query: 92  ERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCR 151
           ++MK++ +L+V+  ++ +++        + +V++  +D         E     ++D LCR
Sbjct: 148 KKMKDQ-NLNVSTQSYNSVLYHFRETDKMWDVYKEIKD-------KNEHTYSTVVDGLCR 199

Query: 152 SGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHT 211
             +   A   +     + + PS+VS+NSI+ G CK G    A       ++ G +PS ++
Sbjct: 200 QQKLEDAVLFLRTSEWKDIGPSVVSFNSIMSGYCKLGFVDMAKSFFCTVLKCGLVPSVYS 259

Query: 212 YKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC-NIYLRALCLIKNPTELLNVLVFM 270
           + +L+ GLC    + +A ++   M +K  V+   +  NI  +   L+   +    V+  M
Sbjct: 260 HNILINGLCLVGSIAEALELASDM-NKHGVEPDSVTYNILAKGFHLLGMISGAWEVIRDM 318

Query: 271 LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR 330
           L     PDVIT   ++ G C++G I+  L +L DM++  F     +  + ++ GL   GR
Sbjct: 319 LDKGLSPDVITYTILLCGQCQLGNIDMGLVLLKDMLSRGFELNSIIPCSVMLSGLCKTGR 378

Query: 331 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYA 390
           I EAL+L  Q M   G SP +V Y+ V+ GL +L + + A  +++ M    ++ +S T+ 
Sbjct: 379 IDEALSLFNQ-MKADGLSPDLVAYSIVIHGLCKLGKFDMALWLYDEMCDKRILPNSRTHG 437

Query: 391 IVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 450
            ++ GLC+   L EA+   D ++      D  +Y  +I G  +SG I EA+     ++++
Sbjct: 438 ALLLGLCQKGMLLEARSLLDSLISSGETLDIVLYNIVIDGYAKSGCIEEALELFKVVIET 497

Query: 451 GVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           G+TP++  +N +I G CK     EA +IL  ++  GL P  V++  L   + N GN
Sbjct: 498 GITPSVATFNSLIYGYCKTQNIAEARKILDVIKLYGLAPSVVSYTTLMDAYANCGN 553



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 115/415 (27%), Positives = 196/415 (47%), Gaps = 11/415 (2%)

Query: 89  KLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV---FRIAEDMPQGKSVNEEFACGHM 145
           K+W+  KE +D   N   ++ +VD LCR+  + +     R +E    G SV    +   +
Sbjct: 174 KMWDVYKEIKD--KNEHTYSTVVDGLCRQQKLEDAVLFLRTSEWKDIGPSV---VSFNSI 228

Query: 146 IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY 205
           +   C+ G    A      + K GL PS+ S+N +++GLC  G    A +L  +  + G 
Sbjct: 229 MSGYCKLGFVDMAKSFFCTVLKCGLVPSVYSHNILINGLCLVGSIAEALELASDMNKHGV 288

Query: 206 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 265
            P   TY +L +G      +  A +V++ ML K          I L   C + N    L 
Sbjct: 289 EPDSVTYNILAKGFHLLGMISGAWEVIRDMLDKGLSPDVITYTILLCGQCQLGNIDMGLV 348

Query: 266 VLVFMLQTQCQPD-VITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 324
           +L  ML    + + +I  + +++G CK GRI+EAL + N M A    +PD V ++ +I G
Sbjct: 349 LLKDMLSRGFELNSIIPCSVMLSGLCKTGRIDEALSLFNQMKADGL-SPDLVAYSIVIHG 407

Query: 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 384
           L  +G+   AL  LY  M  +   P   T+ A+L GL +   + EA+ + + ++  G   
Sbjct: 408 LCKLGKFDMAL-WLYDEMCDKRILPNSRTHGALLLGLCQKGMLLEARSLLDSLISSGETL 466

Query: 385 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFL 444
           D   Y IVIDG  +S  ++EA   +  ++          + ++I G C++  I EA   L
Sbjct: 467 DIVLYNIVIDGYAKSGCIEEALELFKVVIETGITPSVATFNSLIYGYCKTQNIAEARKIL 526

Query: 445 YELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
             +   G+ P++V Y  ++D        +   ++ REM+  G+ P  VT+ ++ K
Sbjct: 527 DVIKLYGLAPSVVSYTTLMDAYANCGNTKSIDELRREMKAEGIPPTNVTYSVIFK 581



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 110/430 (25%), Positives = 186/430 (43%), Gaps = 30/430 (6%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R+ EA  LF  MK+ G  P++V+Y+ +IHG C+ G+ D+A  ++DEM    +LPN
Sbjct: 373 LCKTGRIDEALSLFNQMKADGLSPDLVAYSIVIHGLCKLGKFDMALWLYDEMCDKRILPN 432

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           S T+  L+ G+ +   +  A  L+  L     E  D+ + N        S C E  + E+
Sbjct: 433 SRTHGALLLGLCQKGMLLEARSLLDSLISS-GETLDIVLYNIVIDGYAKSGCIEEAL-EL 490

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           F++  +     SV        +I   C++     A +++ V++  GL PS+VSY +++  
Sbjct: 491 FKVVIETGITPSVA---TFNSLIYGYCKTQNIAEARKILDVIKLYGLAPSVVSYTTLMDA 547

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
               G      +L  E    G  P+  TY V+ +GLC     E    VL+  + +K    
Sbjct: 548 YANCGNTKSIDELRREMKAEGIPPTNVTYSVIFKGLCRGWKHENCNHVLRERIFEK---- 603

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
              C   LR                 M      PD IT NT+I   C++  +  A   L 
Sbjct: 604 ---CKQGLRD----------------MESEGIPPDQITYNTIIQYLCRVKHLSGAFVFLE 644

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            M +    A  A T+  +I  L   G I++A + +Y +  Q   S     Y  +++    
Sbjct: 645 IMKSRNLDASSA-TYNILIDSLCVYGYIRKADSFIYSLQEQ-NVSLSKFAYTTLIKAHCV 702

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
               E A ++F+ +L  G       Y+ VI+ LC  + ++      + +    +   ++V
Sbjct: 703 KGDPEMAVKLFHQLLHRGFNVSIRDYSAVINRLCRRHLMNCFPGQSNGVCCLISNERSFV 762

Query: 424 YAAMIKGLCR 433
           Y  ++   CR
Sbjct: 763 YCPILSANCR 772


>gi|356558657|ref|XP_003547620.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g55840-like [Glycine max]
          Length = 1078

 Score =  185 bits (469), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 109/468 (23%), Positives = 224/468 (47%), Gaps = 6/468 (1%)

Query: 30  VSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFK 89
           +SYT +I G C+ G ++ A ++ D+M    V P+ +T+SVL+ G  R   +  A  +M K
Sbjct: 386 ISYTAMIDGLCKNGMLEEAVQLLDDMLKVSVNPDVVTFSVLINGFFRVGKINNAKEIMCK 445

Query: 90  LWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSL 149
           +++       L  N   ++ L+ + C+ GY+ E       M     V + F C  ++ + 
Sbjct: 446 MYK-----TGLVPNGILYSTLIYNYCKMGYLKEALNAYAVMNHSGHVADHFTCNVLVATF 500

Query: 150 CRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSE 209
           CR G+   A   +  M + GL P+ V+++ I++G    G  ++A+ + ++   FG+ PS 
Sbjct: 501 CRYGKLEEAEYFMNHMSRMGLDPNSVTFDCIINGYGNSGDALKAFSVFDKMNSFGHFPSL 560

Query: 210 HTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVF 269
            TY  L++GLC    + +A K    +    +     I N  L + C   N ++ + ++  
Sbjct: 561 FTYGGLLKGLCIGGHINEALKFFHRLRCIPNAVDNVIFNTKLTSTCRSGNLSDAIALINE 620

Query: 270 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG 329
           M+     PD  T   +I G CK G+I  AL +    +     +P+   +T+++ GLL  G
Sbjct: 621 MVTNDFLPDNFTYTNLIAGLCKKGKIVAALLLSGKAIEKGLLSPNPAVYTSLVDGLLKHG 680

Query: 330 RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTY 389
             + AL  +++ M  +   P  V +N ++    R  +  +  ++ + M    +  +  TY
Sbjct: 681 HARAAL-YIFEEMLNKDVEPDTVAFNVIIDQYSRKGKTSKVNDILSTMKSKNLCFNLATY 739

Query: 390 AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449
            I++ G  + + +      + D++    + D + + ++I G C+S     A+  L  +  
Sbjct: 740 NILLHGYAKRHAMARCFMLYKDMIRHGFLPDKFSWHSLILGYCQSKSFDVAIKILRWITL 799

Query: 450 SGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            G   +   +N++I   C+ +  ++A++++++M +  + P+  T+  L
Sbjct: 800 EGHVIDRFTFNMLITKFCERNEMKKAFELVKQMNQFMVIPNVDTYNAL 847



 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 135/506 (26%), Positives = 227/506 (44%), Gaps = 43/506 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC  SR  + + L   M+     PN ++Y TLI G+ R G+++VA KVFDEM    +
Sbjct: 252 IDNLCRDSRSAKGYLLLKRMRRNMVYPNEITYNTLISGFVREGKIEVATKVFDEMSLFNL 311

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           LPNS+TY+ L+ G   T ++  A  LM      +     L  N   +  L++ L +    
Sbjct: 312 LPNSITYNTLIAGHCTTGNIGEALRLM-----DVMVSHGLRPNEVTYGALLNGLYKNAEF 366

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
             V  I E M  G       +   MID LC++G    A +++  M K  + P +V+++ +
Sbjct: 367 GMVSSILERMRMGGVRVSHISYTAMIDGLCKNGMLEEAVQLLDDMLKVSVNPDVVTFSVL 426

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++G  + G    A +++ +  + G +P+   Y  L+   C    L++A            
Sbjct: 427 INGFFRVGKINNAKEIMCKMYKTGLVPNGILYSTLIYNYCKMGYLKEA------------ 474

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                  LN    M  +    D  T N ++  FC+ G++EEA  
Sbjct: 475 -----------------------LNAYAVMNHSGHVADHFTCNVLVATFCRYGKLEEAEY 511

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
            +N M       P++VTF  II G  N G   +A + ++  M   G+ P + TY  +L+G
Sbjct: 512 FMNHMSRMGL-DPNSVTFDCIINGYGNSGDALKAFS-VFDKMNSFGHFPSLFTYGGLLKG 569

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L     + EA + F+ +  I    D+  +   +   C S  L +A    +++V    + D
Sbjct: 570 LCIGGHINEALKFFHRLRCIPNAVDNVIFNTKLTSTCRSGNLSDAIALINEMVTNDFLPD 629

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSG-VTPNIVCYNVVIDGACKLSMKREAYQIL 479
           N+ Y  +I GLC+ GKI  A+    + ++ G ++PN   Y  ++DG  K    R A  I 
Sbjct: 630 NFTYTNLIAGLCKKGKIVAALLLSGKAIEKGLLSPNPAVYTSLVDGLLKHGHARAALYIF 689

Query: 480 REMRKNGLNPDAVTWRILDKLHGNRG 505
            EM    + PD V + ++   +  +G
Sbjct: 690 EEMLNKDVEPDTVAFNVIIDQYSRKG 715



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 120/480 (25%), Positives = 220/480 (45%), Gaps = 6/480 (1%)

Query: 4    LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            LC    + EA K F  ++   +  + V + T +   CR+G +  A  + +EM     LP+
Sbjct: 570  LCIGGHINEALKFFHRLRCIPNAVDNVIFNTKLTSTCRSGNLSDAIALINEMVTNDFLPD 629

Query: 64   SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            + TY+ L+ G+ +   +  A +L  K  E+      LS N A + +LVD L + G+    
Sbjct: 630  NFTYTNLIAGLCKKGKIVAALLLSGKAIEK----GLLSPNPAVYTSLVDGLLKHGHARAA 685

Query: 124  FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
              I E+M       +  A   +ID   R G+    + ++  M+ + L  +L +YN ++HG
Sbjct: 686  LYIFEEMLNKDVEPDTVAFNVIIDQYSRKGKTSKVNDILSTMKSKNLCFNLATYNILLHG 745

Query: 184  LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
              K     R + L ++ I+ G+LP + ++  L+ G C     + A K+L+++  +  V  
Sbjct: 746  YAKRHAMARCFMLYKDMIRHGFLPDKFSWHSLILGYCQSKSFDVAIKILRWITLEGHVID 805

Query: 244  TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                N+ +   C      +   ++  M Q    P+V T N + NG  +     +A +VL 
Sbjct: 806  RFTFNMLITKFCERNEMKKAFELVKQMNQFMVIPNVDTYNALFNGLIRTSDFHKAHRVLQ 865

Query: 304  DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
             ++      P    + T+I G+  VG I+ A+ L  + M   G S   V  +A++RGL  
Sbjct: 866  VLLESG-SVPTNKQYITLINGMCRVGNIKGAMKLQDE-MKTLGISSHNVAMSAIVRGLAN 923

Query: 364  LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
             +++E A  V + ML + ++    T+  ++   C+   + +A      +       D   
Sbjct: 924  SKKIENAIWVLDLMLEMQIIPTVATFTTLMHVYCKEANVAKALELRSIMEHCHVKLDVVA 983

Query: 424  YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
            Y  +I GLC +G I  A     E+    + PN   Y V+ID  C  + + E+ ++LR+++
Sbjct: 984  YNVLISGLCANGDIEAAFKLYEEMKQRDLWPNTSIYIVLIDSFCAGNYQIESEKLLRDIQ 1043



 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 124/523 (23%), Positives = 238/523 (45%), Gaps = 48/523 (9%)

Query: 10  VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSV 69
           VG+A + F+ M  RG  P+V +   ++    +  ++D+ +  F  M   G+ P+  T+++
Sbjct: 121 VGDAVQTFYLMGFRGLNPSVYTCNMVLGSLVKEQKVDMFWSFFKGMLAKGICPDVATFNI 180

Query: 70  LVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAED 129
           L+  +      + A  L+ K+     EE  +      +  L++  C++G      ++ + 
Sbjct: 181 LLNALCERGKFKNAGFLLRKM-----EESGVYPTAVTYNTLLNWYCKKGRYKAASQLIDC 235

Query: 130 MP-QGKSVNEEFACGH--MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK 186
           M  +G  V+    C +   ID+LCR  R+     ++  MR+  + P+ ++YN+++ G  +
Sbjct: 236 MASKGIGVD---VCTYNVFIDNLCRDSRSAKGYLLLKRMRRNMVYPNEITYNTLISGFVR 292

Query: 187 HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK-------- 238
            G    A ++ +E   F  LP+  TY  L+ G C   ++ +A +++  M+S         
Sbjct: 293 EGKIEVATKVFDEMSLFNLLPNSITYNTLIAGHCTTGNIGEALRLMDVMVSHGLRPNEVT 352

Query: 239 ---------KDVDRTRICNIYLR------------------ALCLIKNPTELLNVLVFML 271
                    K+ +   + +I  R                   LC      E + +L  ML
Sbjct: 353 YGALLNGLYKNAEFGMVSSILERMRMGGVRVSHISYTAMIDGLCKNGMLEEAVQLLDDML 412

Query: 272 QTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRI 331
           +    PDV+T + +INGF ++G+I  A +++  M       P+ + ++T+I+    +G +
Sbjct: 413 KVSVNPDVVTFSVLINGFFRVGKINNAKEIMCKMYKTGL-VPNGILYSTLIYNYCKMGYL 471

Query: 332 QEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAI 391
           +EALN  Y VM   G+     T N ++    R  ++EEA+   N M  +G+  +S T+  
Sbjct: 472 KEALN-AYAVMNHSGHVADHFTCNVLVATFCRYGKLEEAEYFMNHMSRMGLDPNSVTFDC 530

Query: 392 VIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 451
           +I+G   S    +A   +D +    +    + Y  ++KGLC  G I+EA+ F + L    
Sbjct: 531 IINGYGNSGDALKAFSVFDKMNSFGHFPSLFTYGGLLKGLCIGGHINEALKFFHRLRCIP 590

Query: 452 VTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
              + V +N  +   C+     +A  ++ EM  N   PD  T+
Sbjct: 591 NAVDNVIFNTKLTSTCRSGNLSDAIALINEMVTNDFLPDNFTY 633



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 118/495 (23%), Positives = 216/495 (43%), Gaps = 8/495 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C   ++ EA      M   G  PN V++  +I+GY  +G+   A+ VFD+M   G  P+
Sbjct: 500 FCRYGKLEEAEYFMNHMSRMGLDPNSVTFDCIINGYGNSGDALKAFSVFDKMNSFGHFPS 559

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             TY  L++G+     +  A     K + R++   + +V+N  F   + S CR G +++ 
Sbjct: 560 LFTYGGLLKGLCIGGHINEA----LKFFHRLRCIPN-AVDNVIFNTKLTSTCRSGNLSDA 614

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGL-TPSLVSYNSIVH 182
             +  +M     + + F   ++I  LC+ G+   A  +     ++GL +P+   Y S+V 
Sbjct: 615 IALINEMVTNDFLPDNFTYTNLIAGLCKKGKIVAALLLSGKAIEKGLLSPNPAVYTSLVD 674

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           GL KHG    A  + EE +     P    + V+++    +    K   +L  M SK    
Sbjct: 675 GLLKHGHARAALYIFEEMLNKDVEPDTVAFNVIIDQYSRKGKTSKVNDILSTMKSKNLCF 734

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
                NI L              +   M++    PD  + +++I G+C+    + A+K+L
Sbjct: 735 NLATYNILLHGYAKRHAMARCFMLYKDMIRHGFLPDKFSWHSLILGYCQSKSFDVAIKIL 794

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
              +  +    D  TF  +I        +++A  L+ Q M Q    P + TYNA+  GL 
Sbjct: 795 R-WITLEGHVIDRFTFNMLITKFCERNEMKKAFELVKQ-MNQFMVIPNVDTYNALFNGLI 852

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
           R     +A  V   +L  G V  +  Y  +I+G+C    +  A +  D++        N 
Sbjct: 853 RTSDFHKAHRVLQVLLESGSVPTNKQYITLINGMCRVGNIKGAMKLQDEMKTLGISSHNV 912

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
             +A+++GL  S KI  A+  L  +++  + P +  +  ++   CK +   +A ++   M
Sbjct: 913 AMSAIVRGLANSKKIENAIWVLDLMLEMQIIPTVATFTTLMHVYCKEANVAKALELRSIM 972

Query: 483 RKNGLNPDAVTWRIL 497
               +  D V + +L
Sbjct: 973 EHCHVKLDVVAYNVL 987



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 102/358 (28%), Positives = 172/358 (48%), Gaps = 2/358 (0%)

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
           + C  ++ SL +  +          M  +G+ P + ++N +++ LC+ G    A  LL +
Sbjct: 141 YTCNMVLGSLVKEQKVDMFWSFFKGMLAKGICPDVATFNILLNALCERGKFKNAGFLLRK 200

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
             + G  P+  TY  L+   C +   + A +++  M SK         N+++  LC    
Sbjct: 201 MEESGVYPTAVTYNTLLNWYCKKGRYKAASQLIDCMASKGIGVDVCTYNVFIDNLCRDSR 260

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
             +   +L  M +    P+ IT NT+I+GF + G+IE A KV ++M       P+++T+ 
Sbjct: 261 SAKGYLLLKRMRRNMVYPNEITYNTLISGFVREGKIEVATKVFDEMSLFNLL-PNSITYN 319

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
           T+I G    G I EAL L+  VM   G  P  VTY A+L GL++         +   M  
Sbjct: 320 TLIAGHCTTGNIGEALRLM-DVMVSHGLRPNEVTYGALLNGLYKNAEFGMVSSILERMRM 378

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
            GV     +Y  +IDGLC++  L+EA +  DD++  S   D   ++ +I G  R GKI+ 
Sbjct: 379 GGVRVSHISYTAMIDGLCKNGMLEEAVQLLDDMLKVSVNPDVVTFSVLINGFFRVGKINN 438

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           A   + ++  +G+ PN + Y+ +I   CK+   +EA      M  +G   D  T  +L
Sbjct: 439 AKEIMCKMYKTGLVPNGILYSTLIYNYCKMGYLKEALNAYAVMNHSGHVADHFTCNVL 496



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 108/503 (21%), Positives = 213/503 (42%), Gaps = 8/503 (1%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C +  + EA   +  M   GHV +  +   L+  +CR G+++ A    + M   G+ PNS
Sbjct: 466 CKMGYLKEALNAYAVMNHSGHVADHFTCNVLVATFCRYGKLEEAEYFMNHMSRMGLDPNS 525

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           +T+  ++ G   + D  +A    F ++++M        +   +  L+  LC  G++NE  
Sbjct: 526 VTFDCIINGYGNSGDALKA----FSVFDKMNSFGHFP-SLFTYGGLLKGLCIGGHINEAL 580

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
           +    +    +  +       + S CRSG    A  ++  M      P   +Y +++ GL
Sbjct: 581 KFFHRLRCIPNAVDNVIFNTKLTSTCRSGNLSDAIALINEMVTNDFLPDNFTYTNLIAGL 640

Query: 185 CKHGGCMRAYQLLEEGIQFGYL-PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           CK G  + A  L  + I+ G L P+   Y  LV+GL        A  + + ML+K     
Sbjct: 641 CKKGKIVAALLLSGKAIEKGLLSPNPAVYTSLVDGLLKHGHARAALYIFEEMLNKDVEPD 700

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
           T   N+ +         +++ ++L  M       ++ T N +++G+ K   +     +  
Sbjct: 701 TVAFNVIIDQYSRKGKTSKVNDILSTMKSKNLCFNLATYNILLHGYAKRHAMARCFMLYK 760

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           DM+   F  PD  ++ ++I G         A+ +L  +  + G+     T+N ++     
Sbjct: 761 DMIRHGFL-PDKFSWHSLILGYCQSKSFDVAIKILRWITLE-GHVIDRFTFNMLITKFCE 818

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
              +++A E+   M    V+ +  TY  + +GL  ++   +A R    ++   ++  N  
Sbjct: 819 RNEMKKAFELVKQMNQFMVIPNVDTYNALFNGLIRTSDFHKAHRVLQVLLESGSVPTNKQ 878

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y  +I G+CR G I  A+    E+   G++ + V  + ++ G         A  +L  M 
Sbjct: 879 YITLINGMCRVGNIKGAMKLQDEMKTLGISSHNVAMSAIVRGLANSKKIENAIWVLDLML 938

Query: 484 KNGLNPDAVTWRILDKLHGNRGN 506
           +  + P   T+  L  ++    N
Sbjct: 939 EMQIIPTVATFTTLMHVYCKEAN 961



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 96/362 (26%), Positives = 157/362 (43%), Gaps = 38/362 (10%)

Query: 137 NEEFACGHMIDSLCRSGRNHG-ASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQ 195
           N   A   ++  +C   R  G A +  Y+M  RGL PS+ + N ++  L K       + 
Sbjct: 102 NSNPAVFDLLIRVCLRNRMVGDAVQTFYLMGFRGLNPSVYTCNMVLGSLVKEQKVDMFWS 161

Query: 196 LLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALC 255
             +  +  G  P   T+ +L+  LC     + A     F+L K                 
Sbjct: 162 FFKGMLAKGICPDVATFNILLNALCERGKFKNA----GFLLRK----------------- 200

Query: 256 LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA 315
                         M ++   P  +T NT++N +CK GR + A +++ D +A K    D 
Sbjct: 201 --------------MEESGVYPTAVTYNTLLNWYCKKGRYKAASQLI-DCMASKGIGVDV 245

Query: 316 VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN 375
            T+   I  L    R  +   LL + M +    P  +TYN ++ G  R  ++E A +VF+
Sbjct: 246 CTYNVFIDNLCRDSRSAKGY-LLLKRMRRNMVYPNEITYNTLISGFVREGKIEVATKVFD 304

Query: 376 CMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG 435
            M    ++ +S TY  +I G C +  + EA R  D +V      +   Y A++ GL ++ 
Sbjct: 305 EMSLFNLLPNSITYNTLIAGHCTTGNIGEALRLMDVMVSHGLRPNEVTYGALLNGLYKNA 364

Query: 436 KIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWR 495
           +       L  +   GV  + + Y  +IDG CK  M  EA Q+L +M K  +NPD VT+ 
Sbjct: 365 EFGMVSSILERMRMGGVRVSHISYTAMIDGLCKNGMLEEAVQLLDDMLKVSVNPDVVTFS 424

Query: 496 IL 497
           +L
Sbjct: 425 VL 426



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/305 (22%), Positives = 129/305 (42%), Gaps = 5/305 (1%)

Query: 1    MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
            +DQ     +  + + +   MKS+    N+ +Y  L+HGY +   M   + ++ +M   G 
Sbjct: 708  IDQYSRKGKTSKVNDILSTMKSKNLCFNLATYNILLHGYAKRHAMARCFMLYKDMIRHGF 767

Query: 61   LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            LP+  ++  L+ G  +++  + A  ++     R    E   ++   F  L+   C    +
Sbjct: 768  LPDKFSWHSLILGYCQSKSFDVAIKIL-----RWITLEGHVIDRFTFNMLITKFCERNEM 822

Query: 121  NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
             + F + + M Q   +        + + L R+   H A RV+ V+ + G  P+   Y ++
Sbjct: 823  KKAFELVKQMNQFMVIPNVDTYNALFNGLIRTSDFHKAHRVLQVLLESGSVPTNKQYITL 882

Query: 181  VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
            ++G+C+ G    A +L +E    G          +V GL     +E A  VL  ML  + 
Sbjct: 883  INGMCRVGNIKGAMKLQDEMKTLGISSHNVAMSAIVRGLANSKKIENAIWVLDLMLEMQI 942

Query: 241  VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
            +         +   C   N  + L +   M     + DV+  N +I+G C  G IE A K
Sbjct: 943  IPTVATFTTLMHVYCKEANVAKALELRSIMEHCHVKLDVVAYNVLISGLCANGDIEAAFK 1002

Query: 301  VLNDM 305
            +  +M
Sbjct: 1003 LYEEM 1007


>gi|356519757|ref|XP_003528536.1| PREDICTED: protein Rf1, mitochondrial-like [Glycine max]
          Length = 871

 Score =  184 bits (468), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 134/501 (26%), Positives = 238/501 (47%), Gaps = 8/501 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +  LC    V EA KLF  ++  G  PN   Y TL+ GY +  E+  A  +++EMR  GV
Sbjct: 324 LHALCREGNVVEARKLFDGIQDMGIAPNAAIYNTLMDGYFKAREVAQASLLYEEMRTTGV 383

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +T+++LV G  +   +E ++ L+  L         L ++++ +  +V SLC  G +
Sbjct: 384 SPDCVTFNILVWGHYKYGRIEDSDRLLKDLI-----VSGLFLDSSLYDVMVSSLCWAGRL 438

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E  ++ +++ +        A   +I +  R+G    A     +M + G TPS  + NS+
Sbjct: 439 DEAMKLLQELLEKGLTLSVVAFNSLIGAYSRAGLEDKAFEAYRIMVRCGFTPSSSTCNSL 498

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GLC+ G    A  LL   ++ G+  ++  Y VL++G    ++LE A+ + + M  +  
Sbjct: 499 LMGLCRKGWLQEARILLYRMLEKGFPINKVAYTVLLDGYFKMNNLEGAQFLWKEMKERGI 558

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                     +  L    N  E   V + M      P+    N++I G C  GR+ EALK
Sbjct: 559 YPDAVAFTALIDGLSKAGNVEEAYEVFLEMSAIGFVPNNFAYNSLIRGLCDCGRVTEALK 618

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +  +M   K    D  TF  II G    G+++ A+      M + G  P I T+N ++ G
Sbjct: 619 LEKEM-RQKGLLSDTFTFNIIIDGFCRRGQMKFAIETFLD-MQRIGLLPDIFTFNILIGG 676

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
             +   +  A E+ N M   G+  D TTY   + G C   ++++A    D ++    + D
Sbjct: 677 YCKAFDMVGAGEIVNKMYSCGLDPDITTYNTYMHGYCRMRKMNQAVIILDQLISAGIVPD 736

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              Y  M+ G+C S  +  A+    +L+  G  PN++  N+++   CK  M  +A    +
Sbjct: 737 TVTYNTMLSGIC-SDILDRAMILTAKLLKMGFIPNVITTNMLLSHFCKQGMPEKALIWGQ 795

Query: 481 EMRKNGLNPDAVTWRILDKLH 501
           ++R+     D +++RILD+ +
Sbjct: 796 KLREISFGFDEISYRILDQAY 816



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 125/478 (26%), Positives = 231/478 (48%), Gaps = 42/478 (8%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M   G  P+V ++TT++H  CR G +  A K+FD ++  G+ PN+  Y+ L+ G  + R+
Sbjct: 308 MVRSGVEPSVATFTTILHALCREGNVVEARKLFDGIQDMGIAPNAAIYNTLMDGYFKARE 367

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
           V +A++L    +E M+    +S +   F  LV    + G + +  R+ +D+       + 
Sbjct: 368 VAQASLL----YEEMRTT-GVSPDCVTFNILVWGHYKYGRIEDSDRLLKDLIVSGLFLDS 422

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
                M+ SLC +GR   A +++  + ++GLT S+V++NS++    + G   +A++    
Sbjct: 423 SLYDVMVSSLCWAGRLDEAMKLLQELLEKGLTLSVVAFNSLIGAYSRAGLEDKAFEAYRI 482

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
            ++ G+ PS  T   L+ GLC +  L++AR +L  M                        
Sbjct: 483 MVRCGFTPSSSTCNSLLMGLCRKGWLQEARILLYRM------------------------ 518

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
                      L+     + +    +++G+ KM  +E A  +  +M   +   PDAV FT
Sbjct: 519 -----------LEKGFPINKVAYTVLLDGYFKMNNLEGAQFLWKEM-KERGIYPDAVAFT 566

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
            +I GL   G ++EA  +  + M   G+ P    YN+++RGL    RV EA ++   M  
Sbjct: 567 ALIDGLSKAGNVEEAYEVFLE-MSAIGFVPNNFAYNSLIRGLCDCGRVTEALKLEKEMRQ 625

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
            G+++D+ T+ I+IDG C   Q+  A   + D+     + D + +  +I G C++  +  
Sbjct: 626 KGLLSDTFTFNIIIDGFCRRGQMKFAIETFLDMQRIGLLPDIFTFNILIGGYCKAFDMVG 685

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           A   + ++   G+ P+I  YN  + G C++    +A  IL ++   G+ PD VT+  +
Sbjct: 686 AGEIVNKMYSCGLDPDITTYNTYMHGYCRMRKMNQAVIILDQLISAGIVPDTVTYNTM 743



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 127/493 (25%), Positives = 229/493 (46%), Gaps = 11/493 (2%)

Query: 11  GEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVL 70
           G   KLF DM  +G  P+ +++  +I G+CR   + V   +   M      P+ +T+++L
Sbjct: 229 GSVWKLFKDMIFKGPRPSNLTFNAMICGFCRQHRVVVGESLLHLMPKFMCSPDVVTFNIL 288

Query: 71  VRGV-LRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAED 129
           +    +  R     +      W  +     +  + A F  ++ +LCREG V E  ++ + 
Sbjct: 289 INACCIGGRTWVAID------WLHLMVRSGVEPSVATFTTILHALCREGNVVEARKLFDG 342

Query: 130 MPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG 189
           +              ++D   ++     AS +   MR  G++P  V++N +V G  K+G 
Sbjct: 343 IQDMGIAPNAAIYNTLMDGYFKAREVAQASLLYEEMRTTGVSPDCVTFNILVWGHYKYGR 402

Query: 190 CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNI 249
              + +LL++ I  G       Y V+V  LC    L++A K+LQ +L K         N 
Sbjct: 403 IEDSDRLLKDLIVSGLFLDSSLYDVMVSSLCWAGRLDEAMKLLQELLEKGLTLSVVAFNS 462

Query: 250 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK 309
            + A        +       M++    P   T N+++ G C+ G ++EA  +L  M+   
Sbjct: 463 LIGAYSRAGLEDKAFEAYRIMVRCGFTPSSSTCNSLLMGLCRKGWLQEARILLYRMLEKG 522

Query: 310 FCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEE 369
           F   + V +T ++ G   +  ++ A   L++ M +RG  P  V + A++ GL +   VEE
Sbjct: 523 F-PINKVAYTVLLDGYFKMNNLEGA-QFLWKEMKERGIYPDAVAFTALIDGLSKAGNVEE 580

Query: 370 AKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIK 429
           A EVF  M  IG V ++  Y  +I GLC+  ++ EA +   ++     + D + +  +I 
Sbjct: 581 AYEVFLEMSAIGFVPNNFAYNSLIRGLCDCGRVTEALKLEKEMRQKGLLSDTFTFNIIID 640

Query: 430 GLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNP 489
           G CR G++  A+    ++   G+ P+I  +N++I G CK      A +I+ +M   GL+P
Sbjct: 641 GFCRRGQMKFAIETFLDMQRIGLLPDIFTFNILIGGYCKAFDMVGAGEIVNKMYSCGLDP 700

Query: 490 DAVTWRILDKLHG 502
           D  T+     +HG
Sbjct: 701 DITTYNTY--MHG 711



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 96/397 (24%), Positives = 184/397 (46%), Gaps = 8/397 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +  LC   R+ EA KL  ++  +G   +VV++ +LI  Y R G  D A++ +  M  CG 
Sbjct: 429 VSSLCWAGRLDEAMKLLQELLEKGLTLSVVAFNSLIGAYSRAGLEDKAFEAYRIMVRCGF 488

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+S T + L+ G+ R   ++ A +L++++ E+        +N  A+  L+D   +   +
Sbjct: 489 TPSSSTCNSLLMGLCRKGWLQEARILLYRMLEK-----GFPINKVAYTVLLDGYFKMNNL 543

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                + ++M +     +  A   +ID L ++G    A  V   M   G  P+  +YNS+
Sbjct: 544 EGAQFLWKEMKERGIYPDAVAFTALIDGLSKAGNVEEAYEVFLEMSAIGFVPNNFAYNSL 603

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GLC  G    A +L +E  Q G L    T+ ++++G C    ++ A +    M     
Sbjct: 604 IRGLCDCGRVTEALKLEKEMRQKGLLSDTFTFNIIIDGFCRRGQMKFAIETFLDMQRIGL 663

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           +      NI +   C   +      ++  M      PD+ T NT ++G+C+M ++ +A+ 
Sbjct: 664 LPDIFTFNILIGGYCKAFDMVGAGEIVNKMYSCGLDPDITTYNTYMHGYCRMRKMNQAVI 723

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +L+ +++     PD VT+ T++ G+ +   I +   +L   + + G+ P ++T N +L  
Sbjct: 724 ILDQLISAGI-VPDTVTYNTMLSGICS--DILDRAMILTAKLLKMGFIPNVITTNMLLSH 780

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLC 397
             +    E+A      +  I    D  +Y I+    C
Sbjct: 781 FCKQGMPEKALIWGQKLREISFGFDEISYRILDQAYC 817



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/236 (29%), Positives = 107/236 (45%), Gaps = 14/236 (5%)

Query: 276 QPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEAL 335
           + D   LNT++ GF  +G   EAL+VL  M+ G    P   + T ++  LL +G      
Sbjct: 174 ESDFSVLNTLLRGFLNVGMGFEALEVLR-MMRGVGVRPGLSSITILLRLLLRIGDYGSVW 232

Query: 336 NLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG 395
             L++ M  +G  P  +T+NA++ G  R  RV   + + + M       D  T+ I+I+ 
Sbjct: 233 K-LFKDMIFKGPRPSNLTFNAMICGFCRQHRVVVGESLLHLMPKFMCSPDVVTFNILINA 291

Query: 396 LCESNQLDEAKRFWDDIVW-----PSNIHDNY-VYAAMIKGLCRSGKIHEAVHFLYELVD 449
            C         R W  I W      S +  +   +  ++  LCR G + EA      + D
Sbjct: 292 CCIGG------RTWVAIDWLHLMVRSGVEPSVATFTTILHALCREGNVVEARKLFDGIQD 345

Query: 450 SGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
            G+ PN   YN ++DG  K     +A  +  EMR  G++PD VT+ IL   H   G
Sbjct: 346 MGIAPNAAIYNTLMDGYFKAREVAQASLLYEEMRTTGVSPDCVTFNILVWGHYKYG 401



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/186 (21%), Positives = 79/186 (42%), Gaps = 5/186 (2%)

Query: 309 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE 368
           +  A D V++   +   +  GR  + ++ +++      Y       N +LRG   +    
Sbjct: 140 QLLAQDVVSW---LIARVGTGRTNKIVDFMWR--NHAMYESDFSVLNTLLRGFLNVGMGF 194

Query: 369 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI 428
           EA EV   M G+GV    ++  I++  L          + + D+++      N  + AMI
Sbjct: 195 EALEVLRMMRGVGVRPGLSSITILLRLLLRIGDYGSVWKLFKDMIFKGPRPSNLTFNAMI 254

Query: 429 KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLN 488
            G CR  ++      L+ +     +P++V +N++I+  C       A   L  M ++G+ 
Sbjct: 255 CGFCRQHRVVVGESLLHLMPKFMCSPDVVTFNILINACCIGGRTWVAIDWLHLMVRSGVE 314

Query: 489 PDAVTW 494
           P   T+
Sbjct: 315 PSVATF 320


>gi|357529169|sp|Q9LMY5.3|PPR41_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g13630
          Length = 826

 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 146/508 (28%), Positives = 239/508 (47%), Gaps = 34/508 (6%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M   C L  V  A   F  +   G VP+V S+  LI+G C  G +  A ++  +M   GV
Sbjct: 271 MSGYCKLGFVDMAKSFFCTVLKCGLVPSVYSHNILINGLCLVGSIAEALELASDMNKHGV 330

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKE--EEDLSVNNAAFANLVDSLCREG 118
            P+S+TY++L +G      +  A       WE +++  ++ LS +   +  L+   C+ G
Sbjct: 331 EPDSVTYNILAKGFHLLGMISGA-------WEVIRDMLDKGLSPDVITYTILLCGQCQLG 383

Query: 119 YVNEVFRIAEDM-PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
            ++    + +DM  +G  +N    C  M+  LC++GR   A  +   M+  GL+P LV+Y
Sbjct: 384 NIDMGLVLLKDMLSRGFELNSIIPCSVMLSGLCKTGRIDEALSLFNQMKADGLSPDLVAY 443

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
           + ++HGLCK G    A  L +E      LP+  T+  L+ GLC +  L +AR +L  ++S
Sbjct: 444 SIVIHGLCKLGKFDMALWLYDEMCDKRILPNSRTHGALLLGLCQKGMLLEARSLLDSLIS 503

Query: 238 KKDVDRTRICNI----YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMG 293
             +     + NI    Y ++ C I+   EL  V++   +T   P V T N++I G+CK  
Sbjct: 504 SGETLDIVLYNIVIDGYAKSGC-IEEALELFKVVI---ETGITPSVATFNSLIYGYCKTQ 559

Query: 294 RIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVT 353
            I EA K+L D++     AP  V++TT++    N G  + +++ L + M   G  P  VT
Sbjct: 560 NIAEARKIL-DVIKLYGLAPSVVSYTTLMDAYANCGNTK-SIDELRREMKAEGIPPTNVT 617

Query: 354 YNAVLRGL------------FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ 401
           Y+ + +GL             R R  E+ K+    M   G+  D  TY  +I  LC    
Sbjct: 618 YSVIFKGLCRGWKHENCNHVLRERIFEKCKQGLRDMESEGIPPDQITYNTIIQYLCRVKH 677

Query: 402 LDEAKRFWDDIVWPSNIH-DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYN 460
           L  A  F  +I+   N+   +  Y  +I  LC  G I +A  F+Y L +  V+ +   Y 
Sbjct: 678 LSGAFVFL-EIMKSRNLDASSATYNILIDSLCVYGYIRKADSFIYSLQEQNVSLSKFAYT 736

Query: 461 VVIDGACKLSMKREAYQILREMRKNGLN 488
            +I   C       A ++  ++   G N
Sbjct: 737 TLIKAHCVKGDPEMAVKLFHQLLHRGFN 764



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 123/458 (26%), Positives = 227/458 (49%), Gaps = 23/458 (5%)

Query: 58  CGVLPNS--------LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFAN 109
           C +L NS        L + +L+    R R V+ +  ++ K+     ++++L+V+  ++ +
Sbjct: 152 CELLSNSFRKWESTGLVWDMLLFLSSRLRMVDDSLYILKKM-----KDQNLNVSTQSYNS 206

Query: 110 LVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRG 169
           ++        + +V++  +D         E     ++D LCR  +   A   +     + 
Sbjct: 207 VLYHFRETDKMWDVYKEIKD-------KNEHTYSTVVDGLCRQQKLEDAVLFLRTSEWKD 259

Query: 170 LTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKAR 229
           + PS+VS+NSI+ G CK G    A       ++ G +PS +++ +L+ GLC    + +A 
Sbjct: 260 IGPSVVSFNSIMSGYCKLGFVDMAKSFFCTVLKCGLVPSVYSHNILINGLCLVGSIAEAL 319

Query: 230 KVLQFMLSKKDVDRTRIC-NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVING 288
           ++   M +K  V+   +  NI  +   L+   +    V+  ML     PDVIT   ++ G
Sbjct: 320 ELASDM-NKHGVEPDSVTYNILAKGFHLLGMISGAWEVIRDMLDKGLSPDVITYTILLCG 378

Query: 289 FCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYS 348
            C++G I+  L +L DM++  F     +  + ++ GL   GRI EAL+L  Q M   G S
Sbjct: 379 QCQLGNIDMGLVLLKDMLSRGFELNSIIPCSVMLSGLCKTGRIDEALSLFNQ-MKADGLS 437

Query: 349 PGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRF 408
           P +V Y+ V+ GL +L + + A  +++ M    ++ +S T+  ++ GLC+   L EA+  
Sbjct: 438 PDLVAYSIVIHGLCKLGKFDMALWLYDEMCDKRILPNSRTHGALLLGLCQKGMLLEARSL 497

Query: 409 WDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACK 468
            D ++      D  +Y  +I G  +SG I EA+     ++++G+TP++  +N +I G CK
Sbjct: 498 LDSLISSGETLDIVLYNIVIDGYAKSGCIEEALELFKVVIETGITPSVATFNSLIYGYCK 557

Query: 469 LSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
                EA +IL  ++  GL P  V++  L   + N GN
Sbjct: 558 TQNIAEARKILDVIKLYGLAPSVVSYTTLMDAYANCGN 595



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 115/415 (27%), Positives = 196/415 (47%), Gaps = 11/415 (2%)

Query: 89  KLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV---FRIAEDMPQGKSVNEEFACGHM 145
           K+W+  KE +D   N   ++ +VD LCR+  + +     R +E    G SV    +   +
Sbjct: 216 KMWDVYKEIKD--KNEHTYSTVVDGLCRQQKLEDAVLFLRTSEWKDIGPSV---VSFNSI 270

Query: 146 IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY 205
           +   C+ G    A      + K GL PS+ S+N +++GLC  G    A +L  +  + G 
Sbjct: 271 MSGYCKLGFVDMAKSFFCTVLKCGLVPSVYSHNILINGLCLVGSIAEALELASDMNKHGV 330

Query: 206 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 265
            P   TY +L +G      +  A +V++ ML K          I L   C + N    L 
Sbjct: 331 EPDSVTYNILAKGFHLLGMISGAWEVIRDMLDKGLSPDVITYTILLCGQCQLGNIDMGLV 390

Query: 266 VLVFMLQTQCQPD-VITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 324
           +L  ML    + + +I  + +++G CK GRI+EAL + N M A    +PD V ++ +I G
Sbjct: 391 LLKDMLSRGFELNSIIPCSVMLSGLCKTGRIDEALSLFNQMKADGL-SPDLVAYSIVIHG 449

Query: 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 384
           L  +G+   AL  LY  M  +   P   T+ A+L GL +   + EA+ + + ++  G   
Sbjct: 450 LCKLGKFDMAL-WLYDEMCDKRILPNSRTHGALLLGLCQKGMLLEARSLLDSLISSGETL 508

Query: 385 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFL 444
           D   Y IVIDG  +S  ++EA   +  ++          + ++I G C++  I EA   L
Sbjct: 509 DIVLYNIVIDGYAKSGCIEEALELFKVVIETGITPSVATFNSLIYGYCKTQNIAEARKIL 568

Query: 445 YELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
             +   G+ P++V Y  ++D        +   ++ REM+  G+ P  VT+ ++ K
Sbjct: 569 DVIKLYGLAPSVVSYTTLMDAYANCGNTKSIDELRREMKAEGIPPTNVTYSVIFK 623



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 107/394 (27%), Positives = 178/394 (45%), Gaps = 19/394 (4%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R+ EA  LF  MK+ G  P++V+Y+ +IHG C+ G+ D+A  ++DEM    +LPN
Sbjct: 415 LCKTGRIDEALSLFNQMKADGLSPDLVAYSIVIHGLCKLGKFDMALWLYDEMCDKRILPN 474

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           S T+  L+ G+ +   +  A  L+  L     E  D+ + N        S C E  + E+
Sbjct: 475 SRTHGALLLGLCQKGMLLEARSLLDSLISS-GETLDIVLYNIVIDGYAKSGCIEEAL-EL 532

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           F++  +     SV        +I   C++     A +++ V++  GL PS+VSY +++  
Sbjct: 533 FKVVIETGITPSVA---TFNSLIYGYCKTQNIAEARKILDVIKLYGLAPSVVSYTTLMDA 589

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLC------------GESDLEKARKV 231
               G      +L  E    G  P+  TY V+ +GLC             E   EK ++ 
Sbjct: 590 YANCGNTKSIDELRREMKAEGIPPTNVTYSVIFKGLCRGWKHENCNHVLRERIFEKCKQG 649

Query: 232 LQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK 291
           L+ M S+         N  ++ LC +K+ +     L  M          T N +I+  C 
Sbjct: 650 LRDMESEGIPPDQITYNTIIQYLCRVKHLSGAFVFLEIMKSRNLDASSATYNILIDSLCV 709

Query: 292 MGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGI 351
            G I +A   +  +   +  +     +TT+I      G  + A+ L +Q++  RG++  I
Sbjct: 710 YGYIRKADSFIYSL-QEQNVSLSKFAYTTLIKAHCVKGDPEMAVKLFHQLL-HRGFNVSI 767

Query: 352 VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 385
             Y+AV+  L R   V E+K  F  ML  G+  D
Sbjct: 768 RDYSAVINRLCRRHLVNESKFFFCLMLSQGISPD 801



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 117/256 (45%), Gaps = 7/256 (2%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C    + EA K+   +K  G  P+VVSYTTL+  Y   G      ++  EM+  G+ P +
Sbjct: 556 CKTQNIAEARKILDVIKLYGLAPSVVSYTTLMDAYANCGNTKSIDELRREMKAEGIPPTN 615

Query: 65  LTYSVLVRGVLRTRDVERAN-VLMFKLWERMK------EEEDLSVNNAAFANLVDSLCRE 117
           +TYSV+ +G+ R    E  N VL  +++E+ K      E E +  +   +  ++  LCR 
Sbjct: 616 VTYSVIFKGLCRGWKHENCNHVLRERIFEKCKQGLRDMESEGIPPDQITYNTIIQYLCRV 675

Query: 118 GYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
            +++  F   E M              +IDSLC  G    A   +Y ++++ ++ S  +Y
Sbjct: 676 KHLSGAFVFLEIMKSRNLDASSATYNILIDSLCVYGYIRKADSFIYSLQEQNVSLSKFAY 735

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
            +++   C  G    A +L  + +  G+  S   Y  ++  LC    + +++     MLS
Sbjct: 736 TTLIKAHCVKGDPEMAVKLFHQLLHRGFNVSIRDYSAVINRLCRRHLVNESKFFFCLMLS 795

Query: 238 KKDVDRTRICNIYLRA 253
           +       IC + +++
Sbjct: 796 QGISPDLDICEVMIKS 811


>gi|242063942|ref|XP_002453260.1| hypothetical protein SORBIDRAFT_04g002660 [Sorghum bicolor]
 gi|241933091|gb|EES06236.1| hypothetical protein SORBIDRAFT_04g002660 [Sorghum bicolor]
          Length = 866

 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 149/532 (28%), Positives = 245/532 (46%), Gaps = 77/532 (14%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +  LC   R+  A ++F  M +R    N  S+  L  GYCR G    A KV D M     
Sbjct: 152 LQALCDAGRMELAQRVFDAMPAR----NEFSFGILARGYCRAGRSIDALKVLDGMPSM-- 205

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             N +  + +V G  +   VE A     +L ERM+ +  L+ N   F   + +LC+ G V
Sbjct: 206 --NLVVCNTVVAGFCKEGLVEEAE----RLVERMRVQ-GLAPNVVTFNARISALCKAGRV 258

Query: 121 NEVFRIAEDMPQ----GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVS 176
            + +RI +DM +    G    ++     M+   C +G    A  +V +MR  G    + S
Sbjct: 259 LDAYRIFQDMQEDWQHGLPRPDQVTFDVMLSGFCDAGFVDEARVLVDIMRCGGFLRRVES 318

Query: 177 YNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFML 236
           YN  + GL ++G    A +LL E    G  P+ +TY ++V GLC E     AR+V  F+ 
Sbjct: 319 YNRWLSGLVRNGRVGEAQELLREMAHEGIQPNSYTYNIIVSGLCKEGKAFDARRVENFIR 378

Query: 237 SKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIE 296
           S                            V+         PDV+T  ++++ +C  G I 
Sbjct: 379 S---------------------------GVM--------SPDVVTYTSLLHAYCSKGNIA 403

Query: 297 EALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
            A ++L++M A K CAP++ T+  ++  L   GR  EA  LL + M ++GYS      N 
Sbjct: 404 AANRILDEM-AQKGCAPNSFTYNVLLQSLWRAGRTTEAERLL-ERMNEKGYSLDTAGCNI 461

Query: 357 VLRGLFRLRRVEEAKEVFNCM----------LG---IGVVADST----------TYAIVI 393
           ++ GL R  R++ A ++ + M          LG   + VV+DS+          TY+I+I
Sbjct: 462 IIDGLCRNSRLDVAMDIVDGMWEEGSGALGRLGNSFLSVVSDSSISQRCLPDQITYSILI 521

Query: 394 DGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVT 453
             LC+  + DEAK+   +++      D+ +Y   I G C+ GK   A+  L ++   G  
Sbjct: 522 SALCKEGRFDEAKKKLLEMIVKDISPDSVIYDTFIHGYCKHGKTSLAIKVLRDMEKKGCN 581

Query: 454 PNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
           P+   YN++I G  +     E  +++ EM++ G++P+ +T+  L K    +G
Sbjct: 582 PSTRTYNLLIRGFEEKHKSEEIMKLMSEMKEKGISPNVMTYNSLIKSFCQQG 633



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 116/459 (25%), Positives = 207/459 (45%), Gaps = 38/459 (8%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMR----HCG 59
            C    V EA +L   M+ +G  PNVV++   I   C+ G +  AY++F +M+    H  
Sbjct: 217 FCKEGLVEEAERLVERMRVQGLAPNVVTFNARISALCKAGRVLDAYRIFQDMQEDWQHGL 276

Query: 60  VLPNSLTYSVLVRGVLRTRDVERANVL--MFKLWERMKEEEDLSVNNAAFANLVDSLCRE 117
             P+ +T+ V++ G      V+ A VL  + +    ++  E       ++   +  L R 
Sbjct: 277 PRPDQVTFDVMLSGFCDAGFVDEARVLVDIMRCGGFLRRVE-------SYNRWLSGLVRN 329

Query: 118 GYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
           G V E   +  +M         +    ++  LC+ G+   A RV   +R   ++P +V+Y
Sbjct: 330 GRVGEAQELLREMAHEGIQPNSYTYNIIVSGLCKEGKAFDARRVENFIRSGVMSPDVVTY 389

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
            S++H  C  G    A ++L+E  Q G  P+  TY VL++ L       +A ++L+ M  
Sbjct: 390 TSLLHAYCSKGNIAAANRILDEMAQKGCAPNSFTYNVLLQSLWRAGRTTEAERLLERMNE 449

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFM-----------------------LQTQ 274
           K     T  CNI +  LC        ++++  M                       +  +
Sbjct: 450 KGYSLDTAGCNIIIDGLCRNSRLDVAMDIVDGMWEEGSGALGRLGNSFLSVVSDSSISQR 509

Query: 275 CQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEA 334
           C PD IT + +I+  CK GR +EA K L +M+  K  +PD+V + T I G    G+   A
Sbjct: 510 CLPDQITYSILISALCKEGRFDEAKKKLLEMIV-KDISPDSVIYDTFIHGYCKHGKTSLA 568

Query: 335 LNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVID 394
           + +L   M ++G +P   TYN ++RG     + EE  ++ + M   G+  +  TY  +I 
Sbjct: 569 IKVLRD-MEKKGCNPSTRTYNLLIRGFEEKHKSEEIMKLMSEMKEKGISPNVMTYNSLIK 627

Query: 395 GLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR 433
             C+   +++A    D+++    + +   +  +IK  C+
Sbjct: 628 SFCQQGMVNKAMPLLDEMLQNELVPNITSFDLLIKAYCK 666



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 131/534 (24%), Positives = 237/534 (44%), Gaps = 37/534 (6%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGH----VPNVVSYTTLIHGYCRTGEMDVAYKVFDEMR 56
           +  LC   RV +A+++F DM+         P+ V++  ++ G+C  G +D A  + D MR
Sbjct: 249 ISALCKAGRVLDAYRIFQDMQEDWQHGLPRPDQVTFDVMLSGFCDAGFVDEARVLVDIMR 308

Query: 57  HCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCR 116
             G L    +Y+  + G++R   V  A  L+     R    E +  N+  +  +V  LC+
Sbjct: 309 CGGFLRRVESYNRWLSGLVRNGRVGEAQELL-----REMAHEGIQPNSYTYNIIVSGLCK 363

Query: 117 EGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVS 176
           EG   +  R+   +  G    +      ++ + C  G    A+R++  M ++G  P+  +
Sbjct: 364 EGKAFDARRVENFIRSGVMSPDVVTYTSLLHAYCSKGNIAAANRILDEMAQKGCAPNSFT 423

Query: 177 YNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFML 236
           YN ++  L + G    A +LLE   + GY        ++++GLC  S L+ A  ++  M 
Sbjct: 424 YNVLLQSLWRAGRTTEAERLLERMNEKGYSLDTAGCNIIIDGLCRNSRLDVAMDIVDGMW 483

Query: 237 SKKDVDRTRICNIYLR-----------------------ALCLIKNPTELLNVLVFMLQT 273
            +      R+ N +L                        ALC      E    L+ M+  
Sbjct: 484 EEGSGALGRLGNSFLSVVSDSSISQRCLPDQITYSILISALCKEGRFDEAKKKLLEMIVK 543

Query: 274 QCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQE 333
              PD +  +T I+G+CK G+   A+KVL DM   K C P   T+  +I G     + +E
Sbjct: 544 DISPDSVIYDTFIHGYCKHGKTSLAIKVLRDM-EKKGCNPSTRTYNLLIRGFEEKHKSEE 602

Query: 334 ALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVI 393
            + L+ + M ++G SP ++TYN++++   +   V +A  + + ML   +V + T++ ++I
Sbjct: 603 IMKLMSE-MKEKGISPNVMTYNSLIKSFCQQGMVNKAMPLLDEMLQNELVPNITSFDLLI 661

Query: 394 DGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVT 453
              C+      A+  +D  +         +Y  M   L   GK  EA + L   ++  V+
Sbjct: 662 KAYCKITDFPSAQMVFDAALRTCG-QKEVLYCLMCTELTTYGKWIEAKNILEMALEMRVS 720

Query: 454 PNIVCYNVVIDGACKLSMKREAYQILREM-RKNGLNPDAVTWRILDKLHGNRGN 506
                Y  +I G C++     A+ +L+ +  K  L   A    ++D L G+RG 
Sbjct: 721 IQSFPYKQIISGLCEVGEVDHAHSLLKLLIAKRHLFDPAAFMPVIDAL-GDRGK 773



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 122/480 (25%), Positives = 200/480 (41%), Gaps = 91/480 (18%)

Query: 107 FANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMR 166
           +  L+ +  RE  ++ V  + +D+    +  + F    ++ +LC +GR   A RV   M 
Sbjct: 113 YNRLILAALRESRLDLVEALYKDLLLSGAQPDVFTRNLLLQALCDAGRMELAQRVFDAMP 172

Query: 167 KRGL-------------------------TPS--LVSYNSIVHGLCKHG----------- 188
            R                            PS  LV  N++V G CK G           
Sbjct: 173 ARNEFSFGILARGYCRAGRSIDALKVLDGMPSMNLVVCNTVVAGFCKEGLVEEAERLVER 232

Query: 189 ---------------------------GCMRAYQLLEEGIQFGYL-PSEHTYKVLVEGLC 220
                                         R +Q ++E  Q G   P + T+ V++ G C
Sbjct: 233 MRVQGLAPNVVTFNARISALCKAGRVLDAYRIFQDMQEDWQHGLPRPDQVTFDVMLSGFC 292

Query: 221 GESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVI 280
               +++AR ++  M     + R    N +L  L       E   +L  M     QP+  
Sbjct: 293 DAGFVDEARVLVDIMRCGGFLRRVESYNRWLSGLVRNGRVGEAQELLREMAHEGIQPNSY 352

Query: 281 TLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQ 340
           T N +++G CK G+  +A +V N + +G   +PD VT+T+++    + G I  A N +  
Sbjct: 353 TYNIIVSGLCKEGKAFDARRVENFIRSG-VMSPDVVTYTSLLHAYCSKGNIAAA-NRILD 410

Query: 341 VMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN 400
            M Q+G +P   TYN +L+ L+R  R  EA+ +   M   G   D+    I+IDGLC ++
Sbjct: 411 EMAQKGCAPNSFTYNVLLQSLWRAGRTTEAERLLERMNEKGYSLDTAGCNIIIDGLCRNS 470

Query: 401 QLDEA----KRFWDD--------------IVWPSNIH-----DNYVYAAMIKGLCRSGKI 437
           +LD A       W++              +V  S+I      D   Y+ +I  LC+ G+ 
Sbjct: 471 RLDVAMDIVDGMWEEGSGALGRLGNSFLSVVSDSSISQRCLPDQITYSILISALCKEGRF 530

Query: 438 HEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            EA   L E++   ++P+ V Y+  I G CK      A ++LR+M K G NP   T+ +L
Sbjct: 531 DEAKKKLLEMIVKDISPDSVIYDTFIHGYCKHGKTSLAIKVLRDMEKKGCNPSTRTYNLL 590



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 88/356 (24%), Positives = 149/356 (41%), Gaps = 31/356 (8%)

Query: 172 PSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKV 231
           P+   YN ++    +         L ++ +  G  P   T  +L++ LC    +E A++V
Sbjct: 108 PTTPVYNRLILAALRESRLDLVEALYKDLLLSGAQPDVFTRNLLLQALCDAGRMELAQRV 167

Query: 232 LQFMLSK----------------KDVDRTR-----------ICNIYLRALCLIKNPTELL 264
              M ++                + +D  +           +CN  +   C      E  
Sbjct: 168 FDAMPARNEFSFGILARGYCRAGRSIDALKVLDGMPSMNLVVCNTVVAGFCKEGLVEEAE 227

Query: 265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG---KFCAPDAVTFTTI 321
            ++  M      P+V+T N  I+  CK GR+ +A ++  DM          PD VTF  +
Sbjct: 228 RLVERMRVQGLAPNVVTFNARISALCKAGRVLDAYRIFQDMQEDWQHGLPRPDQVTFDVM 287

Query: 322 IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG 381
           + G  + G + EA  +L  +M   G+   + +YN  L GL R  RV EA+E+   M   G
Sbjct: 288 LSGFCDAGFVDEA-RVLVDIMRCGGFLRRVESYNRWLSGLVRNGRVGEAQELLREMAHEG 346

Query: 382 VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAV 441
           +  +S TY I++ GLC+  +  +A+R  + I       D   Y +++   C  G I  A 
Sbjct: 347 IQPNSYTYNIIVSGLCKEGKAFDARRVENFIRSGVMSPDVVTYTSLLHAYCSKGNIAAAN 406

Query: 442 HFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
             L E+   G  PN   YNV++    +     EA ++L  M + G + D     I+
Sbjct: 407 RILDEMAQKGCAPNSFTYNVLLQSLWRAGRTTEAERLLERMNEKGYSLDTAGCNII 462


>gi|125561476|gb|EAZ06924.1| hypothetical protein OsI_29163 [Oryza sativa Indica Group]
          Length = 687

 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 122/489 (24%), Positives = 237/489 (48%), Gaps = 21/489 (4%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           R G+A ++F +M  R  +PN ++Y T+I G+ + G+++  + + D+M   G+ PN++TY+
Sbjct: 211 RGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFSLRDQMVCHGLKPNAITYN 270

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRI-A 127
           VL+ G+ R   +   + L+ ++  +    +  +     ++ L D L R G    +  +  
Sbjct: 271 VLLSGLCRAGRMGETSALLDEMASQKMVPDGFT-----YSILFDGLSRNGDSKAMLSLFG 325

Query: 128 EDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKH 187
           + +  G ++  ++ C  +++ LC+ G+   A  V+  +   GL P+ V YN++++G C+ 
Sbjct: 326 KSLKNGVTIG-DYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQT 384

Query: 188 GGCMRAYQLLEEGIQFGYLPSEH------TYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
           G    A+        FG + S H      TY  L+ GLC    +  A+ +L  M      
Sbjct: 385 GELEGAFS------TFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVN 438

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
                 N  + A        +   VL  M +   +P+V++  +++N FCK G+I EA+ +
Sbjct: 439 PTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAI 498

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
           L+DM   K   P+A  +  II   +  G   +A  +L + M   G SP IVTYN +++GL
Sbjct: 499 LDDMFH-KDVLPNAQVYNAIIDAYVEHGPNDQAF-ILVEKMKSNGISPSIVTYNLLIKGL 556

Query: 362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
               ++ EA+E+ N +    ++ D+ +Y  +I   C    +D+A      +         
Sbjct: 557 CNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTV 616

Query: 422 YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
             Y  +I GL  +G++ E  +   +++ + V P+   +N++++   K   + +A  + +E
Sbjct: 617 RTYHQLISGLGGAGRLIEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRKE 676

Query: 482 MRKNGLNPD 490
           M +   N D
Sbjct: 677 MLQKRNNHD 685



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 129/500 (25%), Positives = 221/500 (44%), Gaps = 8/500 (1%)

Query: 10  VGEAHKLFFDMKSRGHVP-NVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           +GEA  +   M   G  P N  SY  +I G  R G    A +VFDEM    VLPN +TY+
Sbjct: 176 LGEAVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYN 235

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
            ++ G ++  D+E      F L ++M     L  N   +  L+  LCR G + E   + +
Sbjct: 236 TMIDGHIKGGDLEAG----FSLRDQMVCH-GLKPNAITYNVLLSGLCRAGRMGETSALLD 290

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
           +M   K V + F    + D L R+G +     +     K G+T    + + +++GLCK G
Sbjct: 291 EMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKSLKNGVTIGDYTCSILLNGLCKDG 350

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
               A ++L+  +  G +P+   Y  L+ G C   +LE A      M S+         N
Sbjct: 351 KVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYN 410

Query: 249 IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 308
             +  LC  +  T   ++L+ M      P V T NT+I+ + + G++E+   VL++M   
Sbjct: 411 ALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQEN 470

Query: 309 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE 368
               P+ V++ +I+      G+I EA+ +L   M  +   P    YNA++         +
Sbjct: 471 GL-KPNVVSYGSIVNAFCKNGKIPEAVAILDD-MFHKDVLPNAQVYNAIIDAYVEHGPND 528

Query: 369 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI 428
           +A  +   M   G+     TY ++I GLC  +Q+ EA+   + +     I D   Y  +I
Sbjct: 529 QAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLI 588

Query: 429 KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLN 488
              C  G I +A+     +   G+   +  Y+ +I G        E   + ++M +N + 
Sbjct: 589 SACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLIEMEYLYQKMMQNNVV 648

Query: 489 PDAVTWRILDKLHGNRGNDF 508
           P      I+ + +   GN+ 
Sbjct: 649 PSNAIHNIMVEAYSKYGNEI 668



 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 118/496 (23%), Positives = 217/496 (43%), Gaps = 8/496 (1%)

Query: 13  AHKLFFDM--KSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVL 70
           A +L  D+  ++R  +P++ S   L+      G      + F  +   G  P++  ++  
Sbjct: 107 ALRLLSDLADEARAPLPSLSSCNLLLEALLSLGRHADVRRAFGILASAGARPDTFAWNKA 166

Query: 71  VRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDM 130
           V+  +   D+  A      +  RM  +     N  ++  ++  + R G   +   + ++M
Sbjct: 167 VQACVAAGDLGEA----VGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVEVFDEM 222

Query: 131 PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGC 190
            +   +        MID   + G       +   M   GL P+ ++YN ++ GLC+ G  
Sbjct: 223 TERAVLPNHITYNTMIDGHIKGGDLEAGFSLRDQMVCHGLKPNAITYNVLLSGLCRAGRM 282

Query: 191 MRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIY 250
                LL+E      +P   TY +L +GL    D +    +    L          C+I 
Sbjct: 283 GETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKSLKNGVTIGDYTCSIL 342

Query: 251 LRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKF 310
           L  LC     +    VL  ++     P  +  NT+ING+C+ G +E A      M + + 
Sbjct: 343 LNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKS-RH 401

Query: 311 CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEA 370
             PD +T+  +I GL    RI  A +LL + M   G +P + T+N ++    R  ++E+ 
Sbjct: 402 IKPDHITYNALINGLCKAERITNAQDLLME-MQDNGVNPTVETFNTLIDAYGRTGQLEKC 460

Query: 371 KEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKG 430
             V + M   G+  +  +Y  +++  C++ ++ EA    DD+     + +  VY A+I  
Sbjct: 461 FIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDA 520

Query: 431 LCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD 490
               G   +A   + ++  +G++P+IV YN++I G C  S   EA +I+  +  + L PD
Sbjct: 521 YVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPD 580

Query: 491 AVTWRILDKLHGNRGN 506
           AV++  L      RGN
Sbjct: 581 AVSYNTLISACCYRGN 596



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 93/381 (24%), Positives = 179/381 (46%), Gaps = 48/381 (12%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   +V  A ++   + + G VP  V Y TLI+GYC+TGE++ A+  F +M+   +
Sbjct: 343 LNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHI 402

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNA--AFANLVDSLCREG 118
            P+ +TY+ L+ G+ +   +  A  L+ ++       +D  VN     F  L+D+  R G
Sbjct: 403 KPDHITYNALINGLCKAERITNAQDLLMEM-------QDNGVNPTVETFNTLIDAYGRTG 455

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
            + + F +  +M +        + G ++++ C++G+   A  ++  M  + + P+   YN
Sbjct: 456 QLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYN 515

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
           +I+    +HG   +A+ L+E+    G  PS  TY +L++GLC +S + +A +++  + + 
Sbjct: 516 AIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNH 575

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
           + +                                   PD ++ NT+I+  C  G I++A
Sbjct: 576 RLI-----------------------------------PDAVSYNTLISACCYRGNIDKA 600

Query: 299 LKVLNDMVAGKFCAPDAV-TFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           L +   M   K+     V T+  +I GL   GR+ E +  LYQ M Q    P    +N +
Sbjct: 601 LDLQQRM--HKYGIKSTVRTYHQLISGLGGAGRLIE-MEYLYQKMMQNNVVPSNAIHNIM 657

Query: 358 LRGLFRLRRVEEAKEVFNCML 378
           +    +     +A+++   ML
Sbjct: 658 VEAYSKYGNEIKAEDLRKEML 678



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 95/419 (22%), Positives = 188/419 (44%), Gaps = 9/419 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R+GE   L  +M S+  VP+  +Y+ L  G  R G+      +F +    GV   
Sbjct: 276 LCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKSLKNGVTIG 335

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             T S+L+ G+ +   V  A  ++  L         L      +  L++  C+ G +   
Sbjct: 336 DYTCSILLNGLCKDGKVSIAEEVLQSLV-----NAGLVPTRVIYNTLINGYCQTGELEGA 390

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           F     M       +      +I+ LC++ R   A  ++  M+  G+ P++ ++N+++  
Sbjct: 391 FSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDA 450

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
             + G   + + +L E  + G  P+  +Y  +V   C    + +A  +L  M  K  +  
Sbjct: 451 YGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPN 510

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQ-CQPDVITLNTVINGFCKMGRIEEALKVL 302
            ++ N  + A  +   P +   +LV  +++    P ++T N +I G C   +I EA +++
Sbjct: 511 AQVYNAIIDAY-VEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEII 569

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
           N +   +   PDAV++ T+I      G I +AL+ L Q M + G    + TY+ ++ GL 
Sbjct: 570 NSLSNHRLI-PDAVSYNTLISACCYRGNIDKALD-LQQRMHKYGIKSTVRTYHQLISGLG 627

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
              R+ E + ++  M+   VV  +  + I+++   +     +A+    +++   N HD+
Sbjct: 628 GAGRLIEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRKEMLQKRNNHDD 686


>gi|413936859|gb|AFW71410.1| hypothetical protein ZEAMMB73_528560 [Zea mays]
          Length = 671

 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 125/528 (23%), Positives = 253/528 (47%), Gaps = 52/528 (9%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C    +G+A ++    ++ G   NVV+YT LI GYCR+G +  A ++   M    V P++
Sbjct: 161 CRDGSLGDAERVVEAARASGTA-NVVTYTALIDGYCRSGRLADALRLIASM---PVAPDT 216

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
            TY+ +++G+   +  E+A  LM     R         N   FA  + + C+ G ++   
Sbjct: 217 YTYNTVLKGLCCAKQWEQAEELM-----REMIRNSCHPNEVTFATQIRAFCQNGLLDRAV 271

Query: 125 RIAEDMPQGKSVNEEFACGHMIDS--------------------------------LCRS 152
            + E MP+     +      +++                                 LC +
Sbjct: 272 ELLEQMPKYGCTPDVIIYSTLVNGFSEHGRVDEALKLLNTMLCRPNTVCYNAALKGLCIA 331

Query: 153 GRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTY 212
           GR      ++  M ++   P+  +++++++ LC++     A ++LE+  ++GY+P   +Y
Sbjct: 332 GRWEEVGELIAEMVRKDCPPNDATFSTLINSLCQNRLVEYAVEVLEQMQKYGYMPDVVSY 391

Query: 213 KVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQ 272
             ++     ++  + A K+L+ ML K D   T   N  L+ LC  K   + + ++  ML+
Sbjct: 392 NTIISCFSDQARADDALKLLKSMLCKPD---TISFNAVLKCLCKAKRWYDAVELVAKMLK 448

Query: 273 TQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQ 332
             C+ + +T N +I+  C+ G++++A++V  +++    C PD VT++++I G    G  +
Sbjct: 449 KDCRINEMTFNILIDSLCQNGQVKDAIEVF-ELMPKYRCMPDIVTYSSLINGFSEQGLDE 507

Query: 333 EALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIV 392
            A +L ++ MP R     I +YNA L+GL    R ++A E+   M+    + +  T+ I+
Sbjct: 508 MAFDL-FRSMPCRA---DIFSYNATLKGLCMAARWDDAGELIADMVTEDCLPNEVTFNIL 563

Query: 393 IDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGV 452
           I  LC+   ++ A   ++ +       D + Y A+I G    G++ +A+ FL  +     
Sbjct: 564 ISSLCQKGLVNRAIDVYEQMPKYGITPDIFTYNALINGYSEQGRLDDALKFLSTM---PC 620

Query: 453 TPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKL 500
            P+ + YN ++ G C+    ++A +++ EM +    P+ VT++  ++L
Sbjct: 621 EPDTISYNSILKGLCRAERWKDAEKLVTEMLRKNCTPNEVTFKYANQL 668



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 131/538 (24%), Positives = 238/538 (44%), Gaps = 87/538 (16%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           + +LC   R+ +A ++   +K+ G   + VS+ TL+ GYCR G +  A +V +  R  G 
Sbjct: 123 IKKLCARRRLADAERVLEALKASGAA-DAVSHNTLVAGYCRDGSLGDAERVVEAARASGT 181

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             N +TY+ L+                                        D  CR G +
Sbjct: 182 A-NVVTYTALI----------------------------------------DGYCRSGRL 200

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +  R+   MP      + +    ++  LC + +   A  ++  M +    P+ V++ + 
Sbjct: 201 ADALRLIASMPVAP---DTYTYNTVLKGLCCAKQWEQAEELMREMIRNSCHPNEVTFATQ 257

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +   C++G   RA +LLE+  ++G  P    Y  LV G      +++A K+L  ML + +
Sbjct: 258 IRAFCQNGLLDRAVELLEQMPKYGCTPDVIIYSTLVNGFSEHGRVDEALKLLNTMLCRPN 317

Query: 241 VDRTRIC-NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                +C N  L+ LC+     E+  ++  M++  C P+  T +T+IN  C+   +E A+
Sbjct: 318 T----VCYNAALKGLCIAGRWEEVGELIAEMVRKDCPPNDATFSTLINSLCQNRLVEYAV 373

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           +VL  M    +  PD V++ TII    +  R  +AL LL  ++ +    P  +++NAVL+
Sbjct: 374 EVLEQMQKYGY-MPDVVSYNTIISCFSDQARADDALKLLKSMLCK----PDTISFNAVLK 428

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD--------- 410
            L + +R  +A E+   ML      +  T+ I+ID LC++ Q+ +A   ++         
Sbjct: 429 CLCKAKRWYDAVELVAKMLKKDCRINEMTFNILIDSLCQNGQVKDAIEVFELMPKYRCMP 488

Query: 411 DIVWPSNI-----------------------HDNYVYAAMIKGLCRSGKIHEAVHFLYEL 447
           DIV  S++                        D + Y A +KGLC + +  +A   + ++
Sbjct: 489 DIVTYSSLINGFSEQGLDEMAFDLFRSMPCRADIFSYNATLKGLCMAARWDDAGELIADM 548

Query: 448 VDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
           V     PN V +N++I   C+  +   A  +  +M K G+ PD  T+  L   +  +G
Sbjct: 549 VTEDCLPNEVTFNILISSLCQKGLVNRAIDVYEQMPKYGITPDIFTYNALINGYSEQG 606



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 105/401 (26%), Positives = 189/401 (47%), Gaps = 19/401 (4%)

Query: 110 LVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRG 169
           L+  LC    + +  R+ E + +     +  +   ++   CR G    A RVV   R  G
Sbjct: 122 LIKKLCARRRLADAERVLEAL-KASGAADAVSHNTLVAGYCRDGSLGDAERVVEAARASG 180

Query: 170 LTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKAR 229
            T ++V+Y +++ G C+ G    A +L+         P  +TY  +++GLC     E+A 
Sbjct: 181 -TANVVTYTALIDGYCRSGRLADALRLIA---SMPVAPDTYTYNTVLKGLCCAKQWEQAE 236

Query: 230 KVLQFMLSKKDVDRTRICNIYLRALC---LIKNPTELLNVLVFMLQTQCQPDVITLNTVI 286
           ++++ M+              +RA C   L+    ELL     M +  C PDVI  +T++
Sbjct: 237 ELMREMIRNSCHPNEVTFATQIRAFCQNGLLDRAVELLEQ---MPKYGCTPDVIIYSTLV 293

Query: 287 NGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
           NGF + GR++EALK+LN M     C P+ V +   + GL   GR +E   L+ + M ++ 
Sbjct: 294 NGFSEHGRVDEALKLLNTM----LCRPNTVCYNAALKGLCIAGRWEEVGELIAE-MVRKD 348

Query: 347 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
             P   T++ ++  L + R VE A EV   M   G + D  +Y  +I    +  + D+A 
Sbjct: 349 CPPNDATFSTLINSLCQNRLVEYAVEVLEQMQKYGYMPDVVSYNTIISCFSDQARADDAL 408

Query: 407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466
           +    ++      D   + A++K LC++ + ++AV  + +++      N + +N++ID  
Sbjct: 409 KLLKSMLCKP---DTISFNAVLKCLCKAKRWYDAVELVAKMLKKDCRINEMTFNILIDSL 465

Query: 467 CKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGND 507
           C+    ++A ++   M K    PD VT+  L      +G D
Sbjct: 466 CQNGQVKDAIEVFELMPKYRCMPDIVTYSSLINGFSEQGLD 506



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/321 (25%), Positives = 153/321 (47%), Gaps = 21/321 (6%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC    V  A ++   M+  G++P+VVSY T+I  +      D A K+   M     
Sbjct: 360 INSLCQNRLVEYAVEVLEQMQKYGYMPDVVSYNTIISCFSDQARADDALKLLKSML---C 416

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P++++++ +++ + + +    A  L+ K+ ++     D  +N   F  L+DSLC+ G V
Sbjct: 417 KPDTISFNAVLKCLCKAKRWYDAVELVAKMLKK-----DCRINEMTFNILIDSLCQNGQV 471

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +   + E MP+ + + +      +I+     G +  A  +   M  R     + SYN+ 
Sbjct: 472 KDAIEVFELMPKYRCMPDIVTYSSLINGFSEQGLDEMAFDLFRSMPCRA---DIFSYNAT 528

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GLC       A +L+ + +    LP+E T+ +L+  LC +  + +A  V + M     
Sbjct: 529 LKGLCMAARWDDAGELIADMVTEDCLPNEVTFNILISSLCQKGLVNRAIDVYEQM----- 583

Query: 241 VDRTRICNIYLRALCLIKNPTE---LLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
             +  I         LI   +E   L + L F+    C+PD I+ N+++ G C+  R ++
Sbjct: 584 -PKYGITPDIFTYNALINGYSEQGRLDDALKFLSTMPCEPDTISYNSILKGLCRAERWKD 642

Query: 298 ALKVLNDMVAGKFCAPDAVTF 318
           A K++ +M+  K C P+ VTF
Sbjct: 643 AEKLVTEMLR-KNCTPNEVTF 662



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 103/206 (50%), Gaps = 7/206 (3%)

Query: 277 PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALN 336
           P VI+ N +I   C   R+ +A +VL  + A    A DAV+  T++ G    G + +A  
Sbjct: 114 PAVISCNILIKKLCARRRLADAERVLEALKASG--AADAVSHNTLVAGYCRDGSLGDAER 171

Query: 337 LLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 396
           ++     +   +  +VTY A++ G  R  R+ +A  +   M    V  D+ TY  V+ GL
Sbjct: 172 VVEAA--RASGTANVVTYTALIDGYCRSGRLADALRLIASM---PVAPDTYTYNTVLKGL 226

Query: 397 CESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNI 456
           C + Q ++A+    +++  S   +   +A  I+  C++G +  AV  L ++   G TP++
Sbjct: 227 CCAKQWEQAEELMREMIRNSCHPNEVTFATQIRAFCQNGLLDRAVELLEQMPKYGCTPDV 286

Query: 457 VCYNVVIDGACKLSMKREAYQILREM 482
           + Y+ +++G  +     EA ++L  M
Sbjct: 287 IIYSTLVNGFSEHGRVDEALKLLNTM 312


>gi|302758668|ref|XP_002962757.1| hypothetical protein SELMODRAFT_70280 [Selaginella moellendorffii]
 gi|300169618|gb|EFJ36220.1| hypothetical protein SELMODRAFT_70280 [Selaginella moellendorffii]
          Length = 439

 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 117/466 (25%), Positives = 229/466 (49%), Gaps = 45/466 (9%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R+GEA + +  M  R  VPN+     L+   C+ G MD A  +F   R     P+
Sbjct: 13  LCKAGRLGEAVECYNQMLERHCVPNLRDINLLLASLCQAGTMDQAMAIF---RGIQCSPS 69

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +T ++L+ G    + +++A     +L+  M++   L      +  ++   C+   +++ 
Sbjct: 70  VITLNILINGFCELQLLDKA----LELFHEMEKNFALVPEATTYTAIIKCYCKMDRLDQA 125

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVM-RKRGLTPSLVSYNSIVH 182
            ++ E+     S  +  A   +    C++ R   A +++  M  K+   P +V++N I+H
Sbjct: 126 RQLLEESSCCSS--DVIAITSVARGFCKAQRVDEAYQLLLDMVEKKSAKPDIVAWNVIIH 183

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           G CK G    AY++LE  +  G +P+  TY  L++G C   +L +A ++ + +LS +D  
Sbjct: 184 GFCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDGFCKSGNLSEALQLFK-VLSSRD-- 240

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
                                            +P+V+T N +I+G CK  R+E A +++
Sbjct: 241 ------------------------------HHAEPNVVTFNALISGLCKADRLEHAFELV 270

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
             M A    A D  T+TT++ GL   GR  E ++ +++ M + G +P +VTY  ++    
Sbjct: 271 KQMKARDLRA-DTFTYTTLMDGLCKQGRTSE-VSRVFEEMLREGCNPSVVTYTTLVHAHC 328

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
           +   +++A++V   M+  G+  D TTY ++++GL E+ ++  A  F++ I+         
Sbjct: 329 KAGSLQDAQQVIRSMVAKGIPPDVTTYTVLLEGLFENGKVRTATEFFEKILRERCPPCAV 388

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACK 468
           VY+A+++G C++  + EAV +  E++D  + P+     ++++  CK
Sbjct: 389 VYSALVRGCCKAALVDEAVKYYVEMLDRRLAPDPATCKLLVEMLCK 434



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 118/442 (26%), Positives = 213/442 (48%), Gaps = 46/442 (10%)

Query: 103 NNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVV 162
           N   F+ L+  LC+ G + E       M +   V        ++ SLC++G    A   +
Sbjct: 2   NRFTFSVLIAGLCKAGRLGEAVECYNQMLERHCVPNLRDINLLLASLCQAGTMDQA---M 58

Query: 163 YVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQ-FGYLPSEHTYKVLVEGLCG 221
            + R    +PS+++ N +++G C+     +A +L  E  + F  +P   TY  +++  C 
Sbjct: 59  AIFRGIQCSPSVITLNILINGFCELQLLDKALELFHEMEKNFALVPEATTYTAIIKCYCK 118

Query: 222 ESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQ-CQPDVI 280
              L++AR++L+   S    D   I ++  R  C  +   E   +L+ M++ +  +PD++
Sbjct: 119 MDRLDQARQLLEES-SCCSSDVIAITSVA-RGFCKAQRVDEAYQLLLDMVEKKSAKPDIV 176

Query: 281 TLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQ 340
             N +I+GFCK GR+ EA ++L  +V+   C P+AVT+TT+I G    G + EAL L ++
Sbjct: 177 AWNVIIHGFCKAGRVREAYEMLETLVSMG-CVPNAVTYTTLIDGFCKSGNLSEALQL-FK 234

Query: 341 VMPQRGY--SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE 398
           V+  R +   P +VT+NA++ GL +  R+E A E+   M    + AD+ TY  ++DGLC+
Sbjct: 235 VLSSRDHHAEPNVVTFNALISGLCKADRLEHAFELVKQMKARDLRADTFTYTTLMDGLCK 294

Query: 399 SNQLDEAKRFWDD----------IVWPSNIH-------------------------DNYV 423
             +  E  R +++          + + + +H                         D   
Sbjct: 295 QGRTSEVSRVFEEMLREGCNPSVVTYTTLVHAHCKAGSLQDAQQVIRSMVAKGIPPDVTT 354

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y  +++GL  +GK+  A  F  +++     P  V Y+ ++ G CK ++  EA +   EM 
Sbjct: 355 YTVLLEGLFENGKVRTATEFFEKILRERCPPCAVVYSALVRGCCKAALVDEAVKYYVEML 414

Query: 484 KNGLNPDAVTWRILDKLHGNRG 505
              L PD  T ++L ++   RG
Sbjct: 415 DRRLAPDPATCKLLVEMLCKRG 436



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 103/407 (25%), Positives = 200/407 (49%), Gaps = 16/407 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEM-RHCG 59
           +  LC    + +A  +F  ++     P+V++   LI+G+C    +D A ++F EM ++  
Sbjct: 45  LASLCQAGTMDQAMAIFRGIQCS---PSVITLNILINGFCELQLLDKALELFHEMEKNFA 101

Query: 60  VLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGY 119
           ++P + TY+ +++   +   +++A  L+       +E    S +  A  ++    C+   
Sbjct: 102 LVPEATTYTAIIKCYCKMDRLDQARQLL-------EESSCCSSDVIAITSVARGFCKAQR 154

Query: 120 VNEVFRIAEDMPQGKSVNEEF-ACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
           V+E +++  DM + KS   +  A   +I   C++GR   A  ++  +   G  P+ V+Y 
Sbjct: 155 VDEAYQLLLDMVEKKSAKPDIVAWNVIIHGFCKAGRVREAYEMLETLVSMGCVPNAVTYT 214

Query: 179 SIVHGLCKHGGCMRAYQLLE--EGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFML 236
           +++ G CK G    A QL +          P+  T+  L+ GLC    LE A ++++ M 
Sbjct: 215 TLIDGFCKSGNLSEALQLFKVLSSRDHHAEPNVVTFNALISGLCKADRLEHAFELVKQMK 274

Query: 237 SKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIE 296
           ++     T      +  LC     +E+  V   ML+  C P V+T  T+++  CK G ++
Sbjct: 275 ARDLRADTFTYTTLMDGLCKQGRTSEVSRVFEEMLREGCNPSVVTYTTLVHAHCKAGSLQ 334

Query: 297 EALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
           +A +V+  MVA K   PD  T+T ++ GL   G+++ A     +++ +R   P  V Y+A
Sbjct: 335 DAQQVIRSMVA-KGIPPDVTTYTVLLEGLFENGKVRTATEFFEKILRERC-PPCAVVYSA 392

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLD 403
           ++RG  +   V+EA + +  ML   +  D  T  ++++ LC+  + D
Sbjct: 393 LVRGCCKAALVDEAVKYYVEMLDRRLAPDPATCKLLVEMLCKRGRTD 439



 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 152/337 (45%), Gaps = 42/337 (12%)

Query: 207 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 266
           P+  T+ VL+ GLC    L +A +    ML +  V   R  N+ L +LC       +   
Sbjct: 1   PNRFTFSVLIAGLCKAGRLGEAVECYNQMLERHCVPNLRDINLLLASLC---QAGTMDQA 57

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTII---- 322
           +      QC P VITLN +INGFC++  +++AL++ ++M       P+A T+T II    
Sbjct: 58  MAIFRGIQCSPSVITLNILINGFCELQLLDKALELFHEMEKNFALVPEATTYTAIIKCYC 117

Query: 323 -----------------------------FGLLNVGRIQEALNLLYQVMPQRGYSPGIVT 353
                                         G     R+ EA  LL  ++ ++   P IV 
Sbjct: 118 KMDRLDQARQLLEESSCCSSDVIAITSVARGFCKAQRVDEAYQLLLDMVEKKSAKPDIVA 177

Query: 354 YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413
           +N ++ G  +  RV EA E+   ++ +G V ++ TY  +IDG C+S  L EA + +   V
Sbjct: 178 WNVIIHGFCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDGFCKSGNLSEALQLFK--V 235

Query: 414 WPSNIH----DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKL 469
             S  H    +   + A+I GLC++ ++  A   + ++    +  +   Y  ++DG CK 
Sbjct: 236 LSSRDHHAEPNVVTFNALISGLCKADRLEHAFELVKQMKARDLRADTFTYTTLMDGLCKQ 295

Query: 470 SMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
               E  ++  EM + G NP  VT+  L   H   G+
Sbjct: 296 GRTSEVSRVFEEMLREGCNPSVVTYTTLVHAHCKAGS 332


>gi|296081012|emb|CBI18516.3| unnamed protein product [Vitis vinifera]
          Length = 967

 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 130/505 (25%), Positives = 232/505 (45%), Gaps = 30/505 (5%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   R  +A+ L   M+     PN V+Y TLI+G+ + G++ VA +VF+EM    +
Sbjct: 310 IDNLCTNHRSAKAYLLLKKMRKEMISPNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDL 369

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +TY+ L+ G     D E A     +L + M E   L +N              G V
Sbjct: 370 SPNCVTYNALIGGHCHVGDFEEA----LRLLDHM-EAAGLRLN------------EHGNV 412

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E  ++   M       + F C  ++ SLCR G+   A + +  M + GL P+ ++Y+ I
Sbjct: 413 TEAMKVYAVMNCNGHGADHFTCNVLVSSLCRDGKLGEAEKFLCHMSRIGLVPNSITYDCI 472

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++G    G  + A+   ++ I+ G  PS  TY  L++GLC   +L +A+K L  +     
Sbjct: 473 INGYGSIGDPLNAFSFFDDMIKCGQHPSFFTYGSLLKGLCKGGNLVEAKKFLNRLHYIPG 532

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
              + + N  L   C   N  E + +   M+Q    PD  T ++++ G C+ G+   A+ 
Sbjct: 533 AVDSVMYNTLLAETCKSGNLHEAVALFDKMVQNNVLPDSYTYSSLLTGLCRKGKAVTAVC 592

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +    +      P+ V +T ++ GL   G  + A    ++ M ++G  P  V +NA++  
Sbjct: 593 LFGTAMGRGTLFPNHVMYTCLVDGLSKAGHPKAAF-YFFEEMMKKGTCPDTVAFNAIIDS 651

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
             R  ++ +A + F+ M   GV  +  TY I++ G  +   L      +  ++      D
Sbjct: 652 CSRRGQMMKANDFFSTMRWWGVCPNLATYNILLHGFSKKQALLRYLSLYSTMMREGIFPD 711

Query: 421 NYVYAAMIKGLCRSG------------KIHEAVHFLYELVDSGVTPNIVCYNVVIDGACK 468
              + ++I GL +SG             + E+   L+E++++GV P    Y  +I+G C+
Sbjct: 712 KLTFHSLILGLSKSGIPDLGVKLLGKMIMEESTVVLHEMLENGVIPKHAQYITLINGMCR 771

Query: 469 LSMKREAYQILREMRKNGLNPDAVT 493
           +   + A+++  EM   G     V 
Sbjct: 772 VGDIQGAFKLKDEMEALGFGSHEVA 796



 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 131/491 (26%), Positives = 224/491 (45%), Gaps = 25/491 (5%)

Query: 24  GHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERA 83
           G  P+V +   ++    +    ++ + +F EM   G+ PN  T+++L+ G+    ++++A
Sbjct: 193 GFKPSVYTCNMILASMVKDKRTELVWSLFREMSDKGICPNVGTFNILINGLCVEGNLKKA 252

Query: 84  NVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACG 143
             L+     +  EE         +  L++  C++G       + + M       +     
Sbjct: 253 GNLL-----KQMEENGFVPTIVTYNTLLNWYCKKGRYKAAIELIDYMICKGIEADVCTYN 307

Query: 144 HMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQF 203
             ID+LC + R+  A  ++  MRK  ++P+ V+YN++++G  K G    A Q+  E  +F
Sbjct: 308 VFIDNLCTNHRSAKAYLLLKKMRKEMISPNEVTYNTLINGFVKEGKIGVAAQVFNEMSKF 367

Query: 204 GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTEL 263
              P+  TY  L+ G C   D E+A ++L  M +             LR L    N TE 
Sbjct: 368 DLSPNCVTYNALIGGHCHVGDFEEALRLLDHMEAAG-----------LR-LNEHGNVTEA 415

Query: 264 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF 323
           + V   M       D  T N +++  C+ G++ EA K L  M       P+++T+  II 
Sbjct: 416 MKVYAVMNCNGHGADHFTCNVLVSSLCRDGKLGEAEKFLCHMSRIGL-VPNSITYDCIIN 474

Query: 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 383
           G  ++G    A +  +  M + G  P   TY ++L+GL +   + EAK+  N +  I   
Sbjct: 475 GYGSIGDPLNAFSF-FDDMIKCGQHPSFFTYGSLLKGLCKGGNLVEAKKFLNRLHYIPGA 533

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
            DS  Y  ++   C+S  L EA   +D +V  + + D+Y Y++++ GLCR GK   AV  
Sbjct: 534 VDSVMYNTLLAETCKSGNLHEAVALFDKMVQNNVLPDSYTYSSLLTGLCRKGKAVTAVCL 593

Query: 444 LYELVDSG-VTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
               +  G + PN V Y  ++DG  K    + A+    EM K G  PD V +  +     
Sbjct: 594 FGTAMGRGTLFPNHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCS 653

Query: 503 NRG-----NDF 508
            RG     NDF
Sbjct: 654 RRGQMMKANDF 664



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 121/511 (23%), Positives = 219/511 (42%), Gaps = 18/511 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +  LC   ++GEA K    M   G VPN ++Y  +I+GY   G+   A+  FD+M  CG 
Sbjct: 438 VSSLCRDGKLGEAEKFLCHMSRIGLVPNSITYDCIINGYGSIGDPLNAFSFFDDMIKCGQ 497

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+  TY  L++G+ +  ++  A   + +L          +V++  +  L+   C+ G +
Sbjct: 498 HPSFFTYGSLLKGLCKGGNLVEAKKFLNRL-----HYIPGAVDSVMYNTLLAETCKSGNL 552

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRG-LTPSLVSYNS 179
           +E   + + M Q   + + +    ++  LCR G+   A  +      RG L P+ V Y  
Sbjct: 553 HEAVALFDKMVQNNVLPDSYTYSSLLTGLCRKGKAVTAVCLFGTAMGRGTLFPNHVMYTC 612

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           +V GL K G    A+   EE ++ G  P    +  +++       + KA      M    
Sbjct: 613 LVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMMKANDFFSTMRWWG 672

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                   NI L      +     L++   M++    PD +T +++I G  K G  +  +
Sbjct: 673 VCPNLATYNILLHGFSKKQALLRYLSLYSTMMREGIFPDKLTFHSLILGLSKSGIPDLGV 732

Query: 300 KVLNDMVAGKFCA-----------PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYS 348
           K+L  M+  +              P    + T+I G+  VG IQ A  L  + M   G+ 
Sbjct: 733 KLLGKMIMEESTVVLHEMLENGVIPKHAQYITLINGMCRVGDIQGAFKLKDE-MEALGFG 791

Query: 349 PGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRF 408
              V  +A++RGL    + E+A  V + ML + ++    T+  ++   C   ++ EA + 
Sbjct: 792 SHEVAESAMVRGLLHCGKTEDAMLVLDHMLRMRLLPTIATFTTLMHRFCRDAKIAEALKL 851

Query: 409 WDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACK 468
              +       D   Y  +I G+C +G    A     E+    + PNI  Y V++D    
Sbjct: 852 KGVMELCGLKLDVVAYNVLIMGMCANGDSAAAFELYEEMRHRDLCPNITTYAVLVDAISA 911

Query: 469 LSMKREAYQILREMRKNGLNPDAVTWRILDK 499
            +   +  ++L ++++ GL     + + LDK
Sbjct: 912 ANNLIQGEKLLTDLQERGLISWGGSTQHLDK 942


>gi|240254074|ref|NP_172820.4| PPR repeat-containing protein [Arabidopsis thaliana]
 gi|332190928|gb|AEE29049.1| PPR repeat-containing protein [Arabidopsis thaliana]
          Length = 806

 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 144/507 (28%), Positives = 237/507 (46%), Gaps = 32/507 (6%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M   C L  V  A   F  +   G VP+V S+  LI+G C  G +  A ++  +M   GV
Sbjct: 229 MSGYCKLGFVDMAKSFFCTVLKCGLVPSVYSHNILINGLCLVGSIAEALELASDMNKHGV 288

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKE--EEDLSVNNAAFANLVDSLCREG 118
            P+S+TY++L +G      +  A       WE +++  ++ LS +   +  L+   C+ G
Sbjct: 289 EPDSVTYNILAKGFHLLGMISGA-------WEVIRDMLDKGLSPDVITYTILLCGQCQLG 341

Query: 119 YVNEVFRIAEDM-PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
            ++    + +DM  +G  +N    C  M+  LC++GR   A  +   M+  GL+P LV+Y
Sbjct: 342 NIDMGLVLLKDMLSRGFELNSIIPCSVMLSGLCKTGRIDEALSLFNQMKADGLSPDLVAY 401

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
           + ++HGLCK G    A  L +E      LP+  T+  L+ GLC +  L +AR +L  ++S
Sbjct: 402 SIVIHGLCKLGKFDMALWLYDEMCDKRILPNSRTHGALLLGLCQKGMLLEARSLLDSLIS 461

Query: 238 KKDVDRTRICNI----YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMG 293
             +     + NI    Y ++ C I+   EL  V++   +T   P V T N++I G+CK  
Sbjct: 462 SGETLDIVLYNIVIDGYAKSGC-IEEALELFKVVI---ETGITPSVATFNSLIYGYCKTQ 517

Query: 294 RIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVT 353
            I EA K+L D++     AP  V++TT++    N G  + +++ L + M   G  P  VT
Sbjct: 518 NIAEARKIL-DVIKLYGLAPSVVSYTTLMDAYANCGNTK-SIDELRREMKAEGIPPTNVT 575

Query: 354 YNAVLRGL------------FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ 401
           Y+ + +GL             R R  E+ K+    M   G+  D  TY  +I  LC    
Sbjct: 576 YSVIFKGLCRGWKHENCNHVLRERIFEKCKQGLRDMESEGIPPDQITYNTIIQYLCRVKH 635

Query: 402 LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNV 461
           L  A  F + +   +    +  Y  +I  LC  G I +A  F+Y L +  V+ +   Y  
Sbjct: 636 LSGAFVFLEIMKSRNLDASSATYNILIDSLCVYGYIRKADSFIYSLQEQNVSLSKFAYTT 695

Query: 462 VIDGACKLSMKREAYQILREMRKNGLN 488
           +I   C       A ++  ++   G N
Sbjct: 696 LIKAHCVKGDPEMAVKLFHQLLHRGFN 722



 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 115/416 (27%), Positives = 211/416 (50%), Gaps = 11/416 (2%)

Query: 92  ERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCR 151
           ++MK++ +L+V+  ++ +++        + +V++  +D         E     ++D LCR
Sbjct: 148 KKMKDQ-NLNVSTQSYNSVLYHFRETDKMWDVYKEIKD-------KNEHTYSTVVDGLCR 199

Query: 152 SGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHT 211
             +   A   +     + + PS+VS+NSI+ G CK G    A       ++ G +PS ++
Sbjct: 200 QQKLEDAVLFLRTSEWKDIGPSVVSFNSIMSGYCKLGFVDMAKSFFCTVLKCGLVPSVYS 259

Query: 212 YKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC-NIYLRALCLIKNPTELLNVLVFM 270
           + +L+ GLC    + +A ++   M +K  V+   +  NI  +   L+   +    V+  M
Sbjct: 260 HNILINGLCLVGSIAEALELASDM-NKHGVEPDSVTYNILAKGFHLLGMISGAWEVIRDM 318

Query: 271 LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR 330
           L     PDVIT   ++ G C++G I+  L +L DM++  F     +  + ++ GL   GR
Sbjct: 319 LDKGLSPDVITYTILLCGQCQLGNIDMGLVLLKDMLSRGFELNSIIPCSVMLSGLCKTGR 378

Query: 331 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYA 390
           I EAL+L  Q M   G SP +V Y+ V+ GL +L + + A  +++ M    ++ +S T+ 
Sbjct: 379 IDEALSLFNQ-MKADGLSPDLVAYSIVIHGLCKLGKFDMALWLYDEMCDKRILPNSRTHG 437

Query: 391 IVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 450
            ++ GLC+   L EA+   D ++      D  +Y  +I G  +SG I EA+     ++++
Sbjct: 438 ALLLGLCQKGMLLEARSLLDSLISSGETLDIVLYNIVIDGYAKSGCIEEALELFKVVIET 497

Query: 451 GVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           G+TP++  +N +I G CK     EA +IL  ++  GL P  V++  L   + N GN
Sbjct: 498 GITPSVATFNSLIYGYCKTQNIAEARKILDVIKLYGLAPSVVSYTTLMDAYANCGN 553



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 115/415 (27%), Positives = 196/415 (47%), Gaps = 11/415 (2%)

Query: 89  KLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV---FRIAEDMPQGKSVNEEFACGHM 145
           K+W+  KE +D   N   ++ +VD LCR+  + +     R +E    G SV    +   +
Sbjct: 174 KMWDVYKEIKD--KNEHTYSTVVDGLCRQQKLEDAVLFLRTSEWKDIGPSV---VSFNSI 228

Query: 146 IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY 205
           +   C+ G    A      + K GL PS+ S+N +++GLC  G    A +L  +  + G 
Sbjct: 229 MSGYCKLGFVDMAKSFFCTVLKCGLVPSVYSHNILINGLCLVGSIAEALELASDMNKHGV 288

Query: 206 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 265
            P   TY +L +G      +  A +V++ ML K          I L   C + N    L 
Sbjct: 289 EPDSVTYNILAKGFHLLGMISGAWEVIRDMLDKGLSPDVITYTILLCGQCQLGNIDMGLV 348

Query: 266 VLVFMLQTQCQPD-VITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 324
           +L  ML    + + +I  + +++G CK GRI+EAL + N M A    +PD V ++ +I G
Sbjct: 349 LLKDMLSRGFELNSIIPCSVMLSGLCKTGRIDEALSLFNQMKADGL-SPDLVAYSIVIHG 407

Query: 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 384
           L  +G+   AL  LY  M  +   P   T+ A+L GL +   + EA+ + + ++  G   
Sbjct: 408 LCKLGKFDMAL-WLYDEMCDKRILPNSRTHGALLLGLCQKGMLLEARSLLDSLISSGETL 466

Query: 385 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFL 444
           D   Y IVIDG  +S  ++EA   +  ++          + ++I G C++  I EA   L
Sbjct: 467 DIVLYNIVIDGYAKSGCIEEALELFKVVIETGITPSVATFNSLIYGYCKTQNIAEARKIL 526

Query: 445 YELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
             +   G+ P++V Y  ++D        +   ++ REM+  G+ P  VT+ ++ K
Sbjct: 527 DVIKLYGLAPSVVSYTTLMDAYANCGNTKSIDELRREMKAEGIPPTNVTYSVIFK 581



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 102/388 (26%), Positives = 173/388 (44%), Gaps = 26/388 (6%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R+ EA  LF  MK+ G  P++V+Y+ +IHG C+ G+ D+A  ++DEM    +LPN
Sbjct: 373 LCKTGRIDEALSLFNQMKADGLSPDLVAYSIVIHGLCKLGKFDMALWLYDEMCDKRILPN 432

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           S T+  L+ G+ +   +  A  L+  L     E  D+ + N        S C E  + E+
Sbjct: 433 SRTHGALLLGLCQKGMLLEARSLLDSLISS-GETLDIVLYNIVIDGYAKSGCIEEAL-EL 490

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           F++  +     SV        +I   C++     A +++ V++  GL PS+VSY +++  
Sbjct: 491 FKVVIETGITPSVA---TFNSLIYGYCKTQNIAEARKILDVIKLYGLAPSVVSYTTLMDA 547

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLC------------GESDLEKARKV 231
               G      +L  E    G  P+  TY V+ +GLC             E   EK ++ 
Sbjct: 548 YANCGNTKSIDELRREMKAEGIPPTNVTYSVIFKGLCRGWKHENCNHVLRERIFEKCKQG 607

Query: 232 LQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK 291
           L+ M S+         N  ++ LC +K+ +     L  M          T N +I+  C 
Sbjct: 608 LRDMESEGIPPDQITYNTIIQYLCRVKHLSGAFVFLEIMKSRNLDASSATYNILIDSLCV 667

Query: 292 MGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGI 351
            G I +A   +  +   +  +     +TT+I      G  + A+ L +Q++  RG++  I
Sbjct: 668 YGYIRKADSFIYSL-QEQNVSLSKFAYTTLIKAHCVKGDPEMAVKLFHQLL-HRGFNVSI 725

Query: 352 VTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
             Y+AV+  L R       + + NC  G
Sbjct: 726 RDYSAVINRLCR-------RHLMNCFPG 746


>gi|356518050|ref|XP_003527697.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Glycine max]
          Length = 556

 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 127/487 (26%), Positives = 234/487 (48%), Gaps = 14/487 (2%)

Query: 22  SRGHVPNVVSYT----TLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRT 77
           ++ H    ++YT    T+++ Y  +   D A      M H G +P S T++ L+  ++R+
Sbjct: 78  TQAHFTPCLTYTPLYDTIVNAYVHSHSTDQALTFLHHMIHEGHVPLSNTFNNLMCLLIRS 137

Query: 78  RDVERANVLMFKLWERMKEEEDLSVNNA-AFANLVDSLCREGYVNEVFRIAEDMPQGKSV 136
              ++A       W    E +   V +A +F  ++   C  GY  + FR+   + +    
Sbjct: 138 NYFDKA-------WWIFNELKSKVVLDAYSFGIMIKGCCEAGYFVKGFRLLAMLEEFGLS 190

Query: 137 NEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQL 196
                   +ID  C+ G    A  +   M + GL P+  +Y+ +++G  K G     +Q+
Sbjct: 191 PNVVIYTTLIDGCCKYGNVMLAKNLFCKMDRLGLVPNPHTYSVLMNGFFKQGLQREGFQM 250

Query: 197 LEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCL 256
            E   + G +P+ + Y  L+   C    ++KA KV   M  K         NI +  LC 
Sbjct: 251 YENMKRSGIVPNAYAYNCLISEYCNGGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCR 310

Query: 257 IKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAV 316
            K   E + ++  + +    P+++T N +INGFC +G+++ A+++ N + +    +P  V
Sbjct: 311 GKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVGKMDTAVRLFNQLKSSGL-SPTLV 369

Query: 317 TFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNC 376
           T+ T+I G   V  +  AL+L+ + M +R  +P  VTY  ++    RL   E+A E+ + 
Sbjct: 370 TYNTLIAGYSKVENLAGALDLVKE-MEERCIAPSKVTYTILIDAFARLNYTEKACEMHSL 428

Query: 377 MLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGK 436
           M   G+V D  TY+++I GLC    + EA + +  +       ++ +Y  MI G C+ G 
Sbjct: 429 MEKSGLVPDVYTYSVLIHGLCVHGNMKEASKLFKSLGEMHLQPNSVIYNTMIHGYCKEGS 488

Query: 437 IHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRI 496
            + A+  L E+V SG+ PN+  +   I   C+    +EA  +L +M  +GL P    +++
Sbjct: 489 SYRALRLLNEMVHSGMVPNVASFCSTIGLLCRDEKWKEAELLLGQMINSGLKPSVSLYKM 548

Query: 497 LDKLHGN 503
           + K+ G+
Sbjct: 549 VHKVKGD 555



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 105/383 (27%), Positives = 185/383 (48%), Gaps = 17/383 (4%)

Query: 15  KLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGV 74
           +L   ++  G  PNVV YTTLI G C+ G + +A  +F +M   G++PN  TYSVL+ G 
Sbjct: 179 RLLAMLEEFGLSPNVVIYTTLIDGCCKYGNVMLAKNLFCKMDRLGLVPNPHTYSVLMNGF 238

Query: 75  LRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGK 134
            + + ++R     F+++E MK    +  N  A+  L+   C  G V++ F++  +M +  
Sbjct: 239 FK-QGLQREG---FQMYENMK-RSGIVPNAYAYNCLISEYCNGGMVDKAFKVFAEMRE-- 291

Query: 135 SVNEEFACGHM-----IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG 189
              +  ACG M     I  LCR  +   A ++V+ + K GL+P++V+YN +++G C  G 
Sbjct: 292 ---KGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVGK 348

Query: 190 CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNI 249
              A +L  +    G  P+  TY  L+ G     +L  A  +++ M  +          I
Sbjct: 349 MDTAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIAPSKVTYTI 408

Query: 250 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK 309
            + A   +    +   +   M ++   PDV T + +I+G C  G ++EA K+   +    
Sbjct: 409 LIDAFARLNYTEKACEMHSLMEKSGLVPDVYTYSVLIHGLCVHGNMKEASKLFKSL-GEM 467

Query: 310 FCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEE 369
              P++V + T+I G    G    AL LL + M   G  P + ++ + +  L R  + +E
Sbjct: 468 HLQPNSVIYNTMIHGYCKEGSSYRALRLLNE-MVHSGMVPNVASFCSTIGLLCRDEKWKE 526

Query: 370 AKEVFNCMLGIGVVADSTTYAIV 392
           A+ +   M+  G+    + Y +V
Sbjct: 527 AELLLGQMINSGLKPSVSLYKMV 549



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 102/451 (22%), Positives = 205/451 (45%), Gaps = 43/451 (9%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           +A  +F ++KS+  V +  S+  +I G C  G     +++   +   G+ PN + Y+ L+
Sbjct: 142 KAWWIFNELKSKV-VLDAYSFGIMIKGCCEAGYFVKGFRLLAMLEEFGLSPNVVIYTTLI 200

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP 131
            G  +  +V  A  L  K+     +   L  N   ++ L++   ++G   E F++ E+M 
Sbjct: 201 DGCCKYGNVMLAKNLFCKM-----DRLGLVPNPHTYSVLMNGFFKQGLQREGFQMYENMK 255

Query: 132 QGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCM 191
           +   V   +A   +I   C  G    A +V   MR++G+   +++YN ++ GLC+     
Sbjct: 256 RSGIVPNAYAYNCLISEYCNGGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFG 315

Query: 192 RAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYL 251
            A +L+ +  + G  P+  TY +L+ G C    ++ A ++   + S              
Sbjct: 316 EAVKLVHKVNKVGLSPNIVTYNILINGFCDVGKMDTAVRLFNQLKS-------------- 361

Query: 252 RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC 311
                                +   P ++T NT+I G+ K+  +  AL ++ +M   +  
Sbjct: 362 ---------------------SGLSPTLVTYNTLIAGYSKVENLAGALDLVKEM-EERCI 399

Query: 312 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK 371
           AP  VT+T +I     +   ++A   ++ +M + G  P + TY+ ++ GL     ++EA 
Sbjct: 400 APSKVTYTILIDAFARLNYTEKACE-MHSLMEKSGLVPDVYTYSVLIHGLCVHGNMKEAS 458

Query: 372 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 431
           ++F  +  + +  +S  Y  +I G C+      A R  +++V    + +   + + I  L
Sbjct: 459 KLFKSLGEMHLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVHSGMVPNVASFCSTIGLL 518

Query: 432 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVV 462
           CR  K  EA   L ++++SG+ P++  Y +V
Sbjct: 519 CRDEKWKEAELLLGQMINSGLKPSVSLYKMV 549



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/271 (22%), Positives = 117/271 (43%), Gaps = 34/271 (12%)

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV-------AGKF-- 310
           P+ L+  L     T C       +T++N +      ++AL  L+ M+       +  F  
Sbjct: 70  PSSLMLQLTQAHFTPCLTYTPLYDTIVNAYVHSHSTDQALTFLHHMIHEGHVPLSNTFNN 129

Query: 311 ------------------------CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
                                      DA +F  +I G    G   +   LL  ++ + G
Sbjct: 130 LMCLLIRSNYFDKAWWIFNELKSKVVLDAYSFGIMIKGCCEAGYFVKGFRLL-AMLEEFG 188

Query: 347 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
            SP +V Y  ++ G  +   V  AK +F  M  +G+V +  TY+++++G  +     E  
Sbjct: 189 LSPNVVIYTTLIDGCCKYGNVMLAKNLFCKMDRLGLVPNPHTYSVLMNGFFKQGLQREGF 248

Query: 407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466
           + ++++     + + Y Y  +I   C  G + +A     E+ + G+   ++ YN++I G 
Sbjct: 249 QMYENMKRSGIVPNAYAYNCLISEYCNGGMVDKAFKVFAEMREKGIACGVMTYNILIGGL 308

Query: 467 CKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           C+     EA +++ ++ K GL+P+ VT+ IL
Sbjct: 309 CRGKKFGEAVKLVHKVNKVGLSPNIVTYNIL 339



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 99/213 (46%), Gaps = 2/213 (0%)

Query: 293 GRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIV 352
           GRI  +L +         C      + TI+   ++     +AL  L+  M   G+ P   
Sbjct: 67  GRIPSSLMLQLTQAHFTPCLTYTPLYDTIVNAYVHSHSTDQALTFLHH-MIHEGHVPLSN 125

Query: 353 TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI 412
           T+N ++  L R    ++A  +FN  L   VV D+ ++ I+I G CE+    +  R    +
Sbjct: 126 TFNNLMCLLIRSNYFDKAWWIFN-ELKSKVVLDAYSFGIMIKGCCEAGYFVKGFRLLAML 184

Query: 413 VWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMK 472
                  +  +Y  +I G C+ G +  A +   ++   G+ PN   Y+V+++G  K  ++
Sbjct: 185 EEFGLSPNVVIYTTLIDGCCKYGNVMLAKNLFCKMDRLGLVPNPHTYSVLMNGFFKQGLQ 244

Query: 473 REAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
           RE +Q+   M+++G+ P+A  +  L   + N G
Sbjct: 245 REGFQMYENMKRSGIVPNAYAYNCLISEYCNGG 277


>gi|449491568|ref|XP_004158939.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 412

 Score =  184 bits (468), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 106/356 (29%), Positives = 186/356 (52%), Gaps = 40/356 (11%)

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
           +ID LC+ G    A  +   M+ +G+ P+++SY+S+VHG C  G    + +L  E +  G
Sbjct: 68  IIDGLCKVGHEDEAKEIFEEMKAQGMIPNVISYSSLVHGFCCAGKLEESKRLFNEMVDQG 127

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL 264
             P+   + VL++ LC E  + +A+K+L+  +               R + L        
Sbjct: 128 VQPNLVQFNVLIDILCKEGKVIEAKKLLEVTIQ--------------RGIIL-------- 165

Query: 265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 324
                        D++T N++I+GFCK+G +  A K+   M   K C  + +++T +I G
Sbjct: 166 -------------DLVTYNSLIDGFCKIGDLSSARKLFLSM-PSKGCEHNEISYTILING 211

Query: 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 384
              + +++EA+NL Y  MPQ G  P + TY+ +L GL +  +V +A ++F  M   G+  
Sbjct: 212 YCKIWKVEEAMNL-YNEMPQVGKRPNVKTYSTLLTGLLQTGKVGDANKLFGVMKASGISV 270

Query: 385 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFL 444
           DS  Y I +DGLC++  L EA   ++++   +   D   Y+ +I GLC++GK+  A  F 
Sbjct: 271 DSCIYVIFLDGLCKNGVLFEAMELFNELKSYNFKLDFESYSRLIDGLCKAGKVEIAWEFF 330

Query: 445 YELVDSGVTPNIVCYNVVIDGACKLSMKREA---YQILREMRKNGLNPDAVTWRIL 497
            +L   G+ PN+V  N++I G C++    +A   ++ + +M +NG  PD +T+  L
Sbjct: 331 KQLSQEGLQPNVVTCNIMIHGFCRVEQVDKANILFEKMEKMEENGCTPDIITYNTL 386



 Score =  161 bits (407), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 120/470 (25%), Positives = 212/470 (45%), Gaps = 67/470 (14%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M   G  P++ +   L +  C    +         +   G +P+ +TY+ L++G+ R   
Sbjct: 1   MHLAGLSPDLFTLNILANCLCNLNRVSEGLAAMTGILRRGYIPDIVTYNTLIKGLCRVHR 60

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
           +  A  +                       ++D LC+ G+ +E   I E+M     +   
Sbjct: 61  ISVATCI-----------------------IIDGLCKVGHEDEAKEIFEEMKAQGMIPNV 97

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
            +   ++   C +G+   + R+   M  +G+ P+LV +N ++  LCK G  + A +LLE 
Sbjct: 98  ISYSSLVHGFCCAGKLEESKRLFNEMVDQGVQPNLVQFNVLIDILCKEGKVIEAKKLLEV 157

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
            IQ G +    TY  L++G C   DL  ARK+   M SK                     
Sbjct: 158 TIQRGIILDLVTYNSLIDGFCKIGDLSSARKLFLSMPSKG-------------------- 197

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV-AGKFCAPDAVTF 318
                          C+ + I+   +ING+CK+ ++EEA+ + N+M   GK   P+  T+
Sbjct: 198 ---------------CEHNEISYTILINGYCKIWKVEEAMNLYNEMPQVGK--RPNVKTY 240

Query: 319 TTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCML 378
           +T++ GLL  G++ +A N L+ VM   G S     Y   L GL +   + EA E+FN + 
Sbjct: 241 STLLTGLLQTGKVGDA-NKLFGVMKASGISVDSCIYVIFLDGLCKNGVLFEAMELFNELK 299

Query: 379 GIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIH 438
                 D  +Y+ +IDGLC++ +++ A  F+  +       +      MI G CR  ++ 
Sbjct: 300 SYNFKLDFESYSRLIDGLCKAGKVEIAWEFFKQLSQEGLQPNVVTCNIMIHGFCRVEQVD 359

Query: 439 EAVHFLYE----LVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484
           +A + L+E    + ++G TP+I+ YN ++ G C+ +   E   +L +M K
Sbjct: 360 KA-NILFEKMEKMEENGCTPDIITYNTLLRGFCESNKLEEVVNLLHKMFK 408



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 111/398 (27%), Positives = 185/398 (46%), Gaps = 33/398 (8%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCR-----------------TGEMD 46
           LC L+RV E       +  RG++P++V+Y TLI G CR                  G  D
Sbjct: 20  LCNLNRVSEGLAAMTGILRRGYIPDIVTYNTLIKGLCRVHRISVATCIIIDGLCKVGHED 79

Query: 47  VAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAA 106
            A ++F+EM+  G++PN ++YS LV G      +E +     +L+  M  ++ +  N   
Sbjct: 80  EAKEIFEEMKAQGMIPNVISYSSLVHGFCCAGKLEESK----RLFNEMV-DQGVQPNLVQ 134

Query: 107 FANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMR 166
           F  L+D LC+EG V E  ++ E   Q   + +      +ID  C+ G    A ++   M 
Sbjct: 135 FNVLIDILCKEGKVIEAKKLLEVTIQRGIILDLVTYNSLIDGFCKIGDLSSARKLFLSMP 194

Query: 167 KRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLE 226
            +G   + +SY  +++G CK      A  L  E  Q G  P+  TY  L+ GL     + 
Sbjct: 195 SKGCEHNEISYTILINGYCKIWKVEEAMNLYNEMPQVGKRPNVKTYSTLLTGLLQTGKVG 254

Query: 227 KARKVLQFMLSKKDVDRTRICNIYLRALC---LIKNPTELLNVLVFMLQTQCQPDVITLN 283
            A K+   M +      + I  I+L  LC   ++    EL N L        + D  + +
Sbjct: 255 DANKLFGVMKASGISVDSCIYVIFLDGLCKNGVLFEAMELFNELK---SYNFKLDFESYS 311

Query: 284 TVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLY---Q 340
            +I+G CK G++E A +    + + +   P+ VT   +I G   V ++ +A N+L+   +
Sbjct: 312 RLIDGLCKAGKVEIAWEFFKQL-SQEGLQPNVVTCNIMIHGFCRVEQVDKA-NILFEKME 369

Query: 341 VMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCML 378
            M + G +P I+TYN +LRG     ++EE   + + M 
Sbjct: 370 KMEENGCTPDIITYNTLLRGFCESNKLEEVVNLLHKMF 407



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 162/344 (47%), Gaps = 45/344 (13%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC +    EA ++F +MK++G +PNV+SY++L+HG+C  G+++ + ++F+EM   GV
Sbjct: 69  IDGLCKVGHEDEAKEIFEEMKAQGMIPNVISYSSLVHGFCCAGKLEESKRLFNEMVDQGV 128

Query: 61  LPN-----------------------------------SLTYSVLVRGVLRTRDVERANV 85
            PN                                    +TY+ L+ G  +  D+  A  
Sbjct: 129 QPNLVQFNVLIDILCKEGKVIEAKKLLEVTIQRGIILDLVTYNSLIDGFCKIGDLSSARK 188

Query: 86  LMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQ-GKSVNEEFACGH 144
           L   +  +  E  ++S     +  L++  C+   V E   +  +MPQ GK  N +     
Sbjct: 189 LFLSMPSKGCEHNEIS-----YTILINGYCKIWKVEEAMNLYNEMPQVGKRPNVK-TYST 242

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
           ++  L ++G+   A+++  VM+  G++     Y   + GLCK+G    A +L  E   + 
Sbjct: 243 LLTGLLQTGKVGDANKLFGVMKASGISVDSCIYVIFLDGLCKNGVLFEAMELFNELKSYN 302

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTE-- 262
           +     +Y  L++GLC    +E A +  + +  +        CNI +   C ++   +  
Sbjct: 303 FKLDFESYSRLIDGLCKAGKVEIAWEFFKQLSQEGLQPNVVTCNIMIHGFCRVEQVDKAN 362

Query: 263 -LLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM 305
            L   +  M +  C PD+IT NT++ GFC+  ++EE + +L+ M
Sbjct: 363 ILFEKMEKMEENGCTPDIITYNTLLRGFCESNKLEEVVNLLHKM 406



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 127/244 (52%), Gaps = 14/244 (5%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C +  +  A KLF  M S+G   N +SYT LI+GYC+  +++ A  +++EM   G 
Sbjct: 174 IDGFCKIGDLSSARKLFLSMPSKGCEHNEISYTILINGYCKIWKVEEAMNLYNEMPQVGK 233

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN  TYS L+ G+L+T  V  AN    KL+  MK    +SV++  +   +D LC+ G +
Sbjct: 234 RPNVKTYSTLLTGLLQTGKVGDAN----KLFGVMKAS-GISVDSCIYVIFLDGLCKNGVL 288

Query: 121 NEVFRIAEDMPQGKSVNEEF---ACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
            E   +  ++   KS N +    +   +ID LC++G+   A      + + GL P++V+ 
Sbjct: 289 FEAMELFNEL---KSYNFKLDFESYSRLIDGLCKAGKVEIAWEFFKQLSQEGLQPNVVTC 345

Query: 178 NSIVHGLCKHGGCMRA---YQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQF 234
           N ++HG C+     +A   ++ +E+  + G  P   TY  L+ G C  + LE+   +L  
Sbjct: 346 NIMIHGFCRVEQVDKANILFEKMEKMEENGCTPDIITYNTLLRGFCESNKLEEVVNLLHK 405

Query: 235 MLSK 238
           M  +
Sbjct: 406 MFKR 409



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 116/238 (48%), Gaps = 17/238 (7%)

Query: 276 QPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEAL 335
            PD+ TLN + N  C + R+ E L  +  ++   +  PD VT+ T+I GL  V RI  A 
Sbjct: 7   SPDLFTLNILANCLCNLNRVSEGLAAMTGILRRGY-IPDIVTYNTLIKGLCRVHRISVAT 65

Query: 336 NLL----------------YQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
            ++                ++ M  +G  P +++Y++++ G     ++EE+K +FN M+ 
Sbjct: 66  CIIIDGLCKVGHEDEAKEIFEEMKAQGMIPNVISYSSLVHGFCCAGKLEESKRLFNEMVD 125

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
            GV  +   + ++ID LC+  ++ EAK+  +  +    I D   Y ++I G C+ G +  
Sbjct: 126 QGVQPNLVQFNVLIDILCKEGKVIEAKKLLEVTIQRGIILDLVTYNSLIDGFCKIGDLSS 185

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           A      +   G   N + Y ++I+G CK+    EA  +  EM + G  P+  T+  L
Sbjct: 186 ARKLFLSMPSKGCEHNEISYTILINGYCKIWKVEEAMNLYNEMPQVGKRPNVKTYSTL 243



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 55/98 (56%), Gaps = 3/98 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHC-- 58
           +D LC   +V  A + F  +   G  PNVV+   +IHG+CR  ++D A  +F++M     
Sbjct: 314 IDGLCKAGKVEIAWEFFKQLSQEGLQPNVVTCNIMIHGFCRVEQVDKANILFEKMEKMEE 373

Query: 59  -GVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMK 95
            G  P+ +TY+ L+RG   +  +E    L+ K+++RM+
Sbjct: 374 NGCTPDIITYNTLLRGFCESNKLEEVVNLLHKMFKRMR 411


>gi|414864980|tpg|DAA43537.1| TPA: hypothetical protein ZEAMMB73_764503 [Zea mays]
          Length = 649

 Score =  184 bits (468), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 140/524 (26%), Positives = 237/524 (45%), Gaps = 58/524 (11%)

Query: 26  VPNVVSYTTLIHGYCRTGEMDVAYKVFDEM-RHCGVLPNSLTYSVLVRGVLRTRDVERAN 84
            P    +  LI  Y ++ +   A++ F  +  H   +P S + ++L              
Sbjct: 84  TPQPQVFDLLIRTYTQSRKPREAFEAFRLLLDHRVPVPASASNALLA------------- 130

Query: 85  VLMFKLWERMKEE-------EDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVN 137
           VL    W  + +E        D  VN      +V S C+    +    +  +M +     
Sbjct: 131 VLSRAGWPHLAQEAYRLVLSSDSEVNAYTLNIMVHSYCKTLEFDGADTVISEMEKRCVFP 190

Query: 138 EEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLL 197
           +      +ID+  R+G    A  +V  M  RGL P +V+YNS++ GLCKH    +A ++ 
Sbjct: 191 DVVTHNVLIDARFRAGDVDAAIALVDSMANRGLKPGIVTYNSVLKGLCKHRRFDKAKEVF 250

Query: 198 EEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK---KDV------------- 241
               Q    P   ++ +L+ G C   ++++A K  + M  +    DV             
Sbjct: 251 RTMDQCSVAPDVRSFNILIGGFCRVGEVKEAVKFYKEMQHRYVTPDVVSFSCLIGLFSRR 310

Query: 242 DRTRICNIYLRAL-------------------CLIKNPTELLNVLVFMLQTQCQPDVITL 282
                   YLR +                   C   + +E L V   M+   C PDV+T 
Sbjct: 311 GEMDHAGAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTY 370

Query: 283 NTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVM 342
           NT++NG CK  R+ +A K+LN+M   +   PD  TFTT+I G    G  + AL L   ++
Sbjct: 371 NTLLNGLCKQHRLLDAEKLLNEM-EERGVTPDLCTFTTLIHGYCRQGNFENALQLFDTLL 429

Query: 343 PQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQL 402
            QR   P +VTYN+++ G+ R   + +A E+++ M    ++ +  TY+I+ID  CE  Q+
Sbjct: 430 RQR-LRPDVVTYNSLIDGMCRKGDLAKANELWDDMHAREILPNHITYSILIDSHCEKGQV 488

Query: 403 DEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVV 462
           ++A  F D++V   N+ +   Y ++IKG CRSG + +   FL ++    V P+++ +N +
Sbjct: 489 EDAFGFLDEMVKKGNLPNIRTYNSIIKGYCRSGNVKKGQQFLQKMRQDNVFPDLITFNTL 548

Query: 463 IDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           I G  K      A+ +   M K  + PDAVT+ ++      +GN
Sbjct: 549 IHGYIKEENMHGAFNVFNIMEKEMVRPDAVTYNMIINGFSEQGN 592



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 126/485 (25%), Positives = 231/485 (47%), Gaps = 21/485 (4%)

Query: 13  AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVR 72
           A  +  +M+ R   P+VV++  LI    R G++D A  + D M + G+ P  +TY+ +++
Sbjct: 176 ADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIALVDSMANRGLKPGIVTYNSVLK 235

Query: 73  GVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQ 132
           G+ + R  ++A  +      R  ++  ++ +  +F  L+   CR G V E  +  ++M Q
Sbjct: 236 GLCKHRRFDKAKEVF-----RTMDQCSVAPDVRSFNILIGGFCRVGEVKEAVKFYKEM-Q 289

Query: 133 GKSVNEE---FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG 189
            + V  +   F+C  +I    R G    A   +  M+  GL P  V Y  ++ G C+ G 
Sbjct: 290 HRYVTPDVVSFSC--LIGLFSRRGEMDHAGAYLREMKGLGLVPDGVIYTMVIGGFCRAGS 347

Query: 190 CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNI 249
              A ++ +E + FG LP   TY  L+ GLC +  L  A K+L  M  +           
Sbjct: 348 MSEALRVRDEMVGFGCLPDVVTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTT 407

Query: 250 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK 309
            +   C   N    L +   +L+ + +PDV+T N++I+G C+ G + +A ++ +DM A +
Sbjct: 408 LIHGYCRQGNFENALQLFDTLLRQRLRPDVVTYNSLIDGMCRKGDLAKANELWDDMHARE 467

Query: 310 FCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEE 369
              P+ +T++ +I      G++++A   L + M ++G  P I TYN++++G  R   V++
Sbjct: 468 IL-PNHITYSILIDSHCEKGQVEDAFGFLDE-MVKKGNLPNIRTYNSIIKGYCRSGNVKK 525

Query: 370 AKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD----DIVWPSNIHDNYVYA 425
            ++    M    V  D  T+  +I G  +   +  A   ++    ++V P    D   Y 
Sbjct: 526 GQQFLQKMRQDNVFPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVRP----DAVTYN 581

Query: 426 AMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN 485
            +I G    G + +A      + DSG+ P+   Y  +I+G       ++A+Q+  EM   
Sbjct: 582 MIINGFSEQGNMQDAGRVFKGMGDSGIEPDRYTYMSLINGHVTAGNSKQAFQLHDEMIHR 641

Query: 486 GLNPD 490
           G  PD
Sbjct: 642 GFAPD 646



 Score =  168 bits (426), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 104/410 (25%), Positives = 200/410 (48%), Gaps = 7/410 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R  +A ++F  M      P+V S+  LI G+CR GE+  A K + EM+H  V P+
Sbjct: 237 LCKHRRFDKAKEVFRTMDQCSVAPDVRSFNILIGGFCRVGEVKEAVKFYKEMQHRYVTPD 296

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +++S L+    R  +++ A   +     R  +   L  +   +  ++   CR G ++E 
Sbjct: 297 VVSFSCLIGLFSRRGEMDHAGAYL-----REMKGLGLVPDGVIYTMVIGGFCRAGSMSEA 351

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            R+ ++M     + +      +++ LC+  R   A +++  M +RG+TP L ++ +++HG
Sbjct: 352 LRVRDEMVGFGCLPDVVTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHG 411

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            C+ G    A QL +  ++    P   TY  L++G+C + DL KA ++   M +++ +  
Sbjct: 412 YCRQGNFENALQLFDTLLRQRLRPDVVTYNSLIDGMCRKGDLAKANELWDDMHAREILPN 471

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               +I + + C      +    L  M++    P++ T N++I G+C+ G +++  + L 
Sbjct: 472 HITYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNSIIKGYCRSGNVKKGQQFLQ 531

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            M       PD +TF T+I G +    +  A N+ + +M +    P  VTYN ++ G   
Sbjct: 532 KMRQDN-VFPDLITFNTLIHGYIKEENMHGAFNV-FNIMEKEMVRPDAVTYNMIINGFSE 589

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413
              +++A  VF  M   G+  D  TY  +I+G   +    +A +  D+++
Sbjct: 590 QGNMQDAGRVFKGMGDSGIEPDRYTYMSLINGHVTAGNSKQAFQLHDEMI 639



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 84/314 (26%), Positives = 144/314 (45%), Gaps = 41/314 (13%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   R+ +A KL  +M+ RG  P++ ++TTLIHGYCR G  + A ++FD +    +
Sbjct: 374 LNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHGYCRQGNFENALQLFDTLLRQRL 433

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TY+ L+ G+ R  D+ +AN    +LW+ M   E L  N+  ++ L+DS C +G V
Sbjct: 434 RPDVVTYNSLIDGMCRKGDLAKAN----ELWDDMHAREILP-NHITYSILIDSHCEKGQV 488

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            + F   ++M                                    K+G  P++ +YNSI
Sbjct: 489 EDAFGFLDEMV-----------------------------------KKGNLPNIRTYNSI 513

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G C+ G   +  Q L++  Q    P   T+  L+ G   E ++  A  V   M  +  
Sbjct: 514 IKGYCRSGNVKKGQQFLQKMRQDNVFPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMV 573

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                  N+ +       N  +   V   M  +  +PD  T  ++ING    G  ++A +
Sbjct: 574 RPDAVTYNMIINGFSEQGNMQDAGRVFKGMGDSGIEPDRYTYMSLINGHVTAGNSKQAFQ 633

Query: 301 VLNDMVAGKFCAPD 314
           + ++M+   F APD
Sbjct: 634 LHDEMIHRGF-APD 646


>gi|145336953|ref|NP_176455.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806497|sp|Q3ECK2.2|PPR92_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62680, mitochondrial; Flags: Precursor
 gi|332195872|gb|AEE33993.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 548

 Score =  184 bits (468), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 126/487 (25%), Positives = 227/487 (46%), Gaps = 46/487 (9%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           ++ +A  LF DM      P++V +  L+    +  + DV   +  +M   G+  +  T++
Sbjct: 65  KLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFN 124

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
           +++        V  A  ++ K+ +   E + +++                          
Sbjct: 125 IVINCFCCCFQVSLALSILGKMLKLGYEPDRVTI-------------------------- 158

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
                         G +++  CR  R   A  +V  M + G  P +V+YN+I+  LCK  
Sbjct: 159 --------------GSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTK 204

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
               A+   +E  + G  P+  TY  LV GLC  S    A ++L  M+ KK        +
Sbjct: 205 RVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYS 264

Query: 249 IYLRALCLIKNPTELLNVLVF--MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV 306
             L A   +KN   L    +F  M++    PD++T +++ING C   RI+EA ++  D++
Sbjct: 265 ALLDAF--VKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMF-DLM 321

Query: 307 AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 366
             K C  D V++ T+I G     R+++ + L ++ M QRG     VTYN +++G F+   
Sbjct: 322 VSKGCLADVVSYNTLINGFCKAKRVEDGMKL-FREMSQRGLVSNTVTYNTLIQGFFQAGD 380

Query: 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAA 426
           V++A+E F+ M   G+  D  TY I++ GLC++ +L++A   ++D+       D   Y  
Sbjct: 381 VDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTT 440

Query: 427 MIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG 486
           +I+G+C++GK+ EA      L   G+ P+IV Y  ++ G C   +  E   +  +M++ G
Sbjct: 441 VIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEG 500

Query: 487 LNPDAVT 493
           L  +  T
Sbjct: 501 LMKNDCT 507



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 88/388 (22%), Positives = 187/388 (48%), Gaps = 37/388 (9%)

Query: 107 FANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMR 166
           F  L+ ++ +    + V  + + M      N+ +    +I+  C   +   A  ++  M 
Sbjct: 88  FNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKML 147

Query: 167 KRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLE 226
           K G  P  V+  S+V+G C+      A  L+++ ++ GY P    Y  +++ LC      
Sbjct: 148 KLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLC------ 201

Query: 227 KARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVI 286
           K ++V       K+++R  I                             +P+V+T   ++
Sbjct: 202 KTKRVNDAFDFFKEIERKGI-----------------------------RPNVVTYTALV 232

Query: 287 NGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
           NG C   R  +A ++L+DM+  K   P+ +T++ ++   +  G++ EA  L ++ M +  
Sbjct: 233 NGLCNSSRWSDAARLLSDMIKKKI-TPNVITYSALLDAFVKNGKVLEAKEL-FEEMVRMS 290

Query: 347 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
             P IVTY++++ GL    R++EA ++F+ M+  G +AD  +Y  +I+G C++ ++++  
Sbjct: 291 IDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGM 350

Query: 407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466
           + + ++     + +   Y  +I+G  ++G + +A  F  ++   G++P+I  YN+++ G 
Sbjct: 351 KLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGL 410

Query: 467 CKLSMKREAYQILREMRKNGLNPDAVTW 494
           C      +A  I  +M+K  ++ D VT+
Sbjct: 411 CDNGELEKALVIFEDMQKREMDLDIVTY 438



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 99/365 (27%), Positives = 171/365 (46%), Gaps = 49/365 (13%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   RV +A   F +++ +G  PNVV+YT L++G C +     A ++  +M    +
Sbjct: 197 IDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKI 256

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +TYS L+   ++   V  A  L F+   RM  + D+      +++L++ LC    +
Sbjct: 257 TPNVITYSALLDAFVKNGKVLEAKEL-FEEMVRMSIDPDI----VTYSSLINGLCLHDRI 311

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E  ++ + M     + +  +   +I+  C++ R     ++   M +RGL  + V+YN++
Sbjct: 312 DEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTL 371

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G  + G   +A +   +   FG  P   TY +L+ GLC   +LEKA  + + M  K++
Sbjct: 372 IQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDM-QKRE 430

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           +D                                   D++T  TVI G CK G++EEA  
Sbjct: 431 MDL----------------------------------DIVTYTTVIRGMCKTGKVEEAWS 456

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG-------YSPGIVT 353
           +   + + K   PD VT+TT++ GL   G + E +  LY  M Q G        S G +T
Sbjct: 457 LFCSL-SLKGLKPDIVTYTTMMSGLCTKGLLHE-VEALYTKMKQEGLMKNDCTLSDGDIT 514

Query: 354 YNAVL 358
            +A L
Sbjct: 515 LSAEL 519



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 93/387 (24%), Positives = 179/387 (46%), Gaps = 7/387 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C   +V  A  +   M   G+ P+ V+  +L++G+CR   +  A  + D+M   G  P+
Sbjct: 130 FCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPD 189

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            + Y+ ++  + +T+ V  A    F  ++ + E + +  N   +  LV+ LC     ++ 
Sbjct: 190 IVAYNAIIDSLCKTKRVNDA----FDFFKEI-ERKGIRPNVVTYTALVNGLCNSSRWSDA 244

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            R+  DM + K          ++D+  ++G+   A  +   M +  + P +V+Y+S+++G
Sbjct: 245 ARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLING 304

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LC H     A Q+ +  +  G L    +Y  L+ G C    +E   K+ + M  +  V  
Sbjct: 305 LCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSN 364

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
           T   N  ++      +  +       M      PD+ T N ++ G C  G +E+AL +  
Sbjct: 365 TVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFE 424

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           DM   +    D VT+TT+I G+   G+++EA + L+  +  +G  P IVTY  ++ GL  
Sbjct: 425 DMQKREM-DLDIVTYTTVIRGMCKTGKVEEAWS-LFCSLSLKGLKPDIVTYTTMMSGLCT 482

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYA 390
              + E + ++  M   G++ +  T +
Sbjct: 483 KGLLHEVEALYTKMKQEGLMKNDCTLS 509



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 84/327 (25%), Positives = 164/327 (50%), Gaps = 4/327 (1%)

Query: 172 PSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKV 231
           PS+V +N ++  + K         L ++    G     +T+ +++   C    +  A  +
Sbjct: 83  PSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSI 142

Query: 232 LQFMLS-KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFC 290
           L  ML    + DR  I ++ +   C     ++ ++++  M++   +PD++  N +I+  C
Sbjct: 143 LGKMLKLGYEPDRVTIGSL-VNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLC 201

Query: 291 KMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG 350
           K  R+ +A     + +  K   P+ VT+T ++ GL N  R  +A  LL   M ++  +P 
Sbjct: 202 KTKRVNDAFDFFKE-IERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSD-MIKKKITPN 259

Query: 351 IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD 410
           ++TY+A+L    +  +V EAKE+F  M+ + +  D  TY+ +I+GLC  +++DEA + +D
Sbjct: 260 VITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFD 319

Query: 411 DIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLS 470
            +V    + D   Y  +I G C++ ++ + +    E+   G+  N V YN +I G  +  
Sbjct: 320 LMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAG 379

Query: 471 MKREAYQILREMRKNGLNPDAVTWRIL 497
              +A +   +M   G++PD  T+ IL
Sbjct: 380 DVDKAQEFFSQMDFFGISPDIWTYNIL 406



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 120/237 (50%), Gaps = 13/237 (5%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   R+ EA+++F  M S+G + +VVSY TLI+G+C+   ++   K+F EM   G+
Sbjct: 302 INGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGL 361

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           + N++TY+ L++G  +  DV++A    F   +      D+   N     L+  LC  G +
Sbjct: 362 VSNTVTYNTLIQGFFQAGDVDKAQEF-FSQMDFFGISPDIWTYNI----LLGGLCDNGEL 416

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +   I EDM + +   +      +I  +C++G+   A  +   +  +GL P +V+Y ++
Sbjct: 417 EKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTM 476

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
           + GLC  G       L  +  Q G + ++ T          + D+  + ++++ MLS
Sbjct: 477 MSGLCTKGLLHEVEALYTKMKQEGLMKNDCTL--------SDGDITLSAELIKKMLS 525


>gi|15235288|ref|NP_193742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75098720|sp|O49436.1|PP327_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g20090; AltName: Full=Protein EMBRYO DEFECTIVE 1025
 gi|2827663|emb|CAA16617.1| membrane-associated salt-inducible-like protein [Arabidopsis
           thaliana]
 gi|7268804|emb|CAB79009.1| membrane-associated salt-inducible-like protein [Arabidopsis
           thaliana]
 gi|58013024|gb|AAW62965.1| embryo-defective 1025 [Arabidopsis thaliana]
 gi|332658871|gb|AEE84271.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 660

 Score =  184 bits (468), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 113/398 (28%), Positives = 202/398 (50%), Gaps = 5/398 (1%)

Query: 99  DLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGA 158
           ++S N  +F  ++ +LC+  +V+    +   MP+ K + + +    ++D LC+  R   A
Sbjct: 182 NISPNGLSFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEA 241

Query: 159 SRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEG 218
             ++  M+  G +PS V YN ++ GLCK G   R  +L++     G +P+E TY  L+ G
Sbjct: 242 VLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHG 301

Query: 219 LCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPD 278
           LC +  L+KA  +L+ M+S K +         +  L   +  T+ + +L  M +     +
Sbjct: 302 LCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLN 361

Query: 279 VITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLL 338
               + +I+G  K G+ EEA+ +   M A K C P+ V ++ ++ GL   G+  EA  +L
Sbjct: 362 QHIYSVLISGLFKEGKAEEAMSLWRKM-AEKGCKPNIVVYSVLVDGLCREGKPNEAKEIL 420

Query: 339 YQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE 398
            + M   G  P   TY+++++G F+    EEA +V+  M   G   +   Y+++IDGLC 
Sbjct: 421 NR-MIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCG 479

Query: 399 SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELV---DSGVTPN 455
             ++ EA   W  ++      D   Y+++IKGLC  G +  A+   +E++   +    P+
Sbjct: 480 VGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQEEPKSQPD 539

Query: 456 IVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVT 493
           +V YN+++DG C       A  +L  M   G +PD +T
Sbjct: 540 VVTYNILLDGLCMQKDISRAVDLLNSMLDRGCDPDVIT 577



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 107/408 (26%), Positives = 211/408 (51%), Gaps = 10/408 (2%)

Query: 60  VLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGY 119
           + PN L+++++++ + + R V+RA     +++  M E + L  +   +  L+D LC+E  
Sbjct: 183 ISPNGLSFNLVIKALCKLRFVDRA----IEVFRGMPERKCLP-DGYTYCTLMDGLCKEER 237

Query: 120 VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           ++E   + ++M              +ID LC+ G     +++V  M  +G  P+ V+YN+
Sbjct: 238 IDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNT 297

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++HGLC  G   +A  LLE  +    +P++ TY  L+ GL  +     A ++L  M  + 
Sbjct: 298 LIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERG 357

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                 I ++ +  L       E +++   M +  C+P+++  + +++G C+ G+  EA 
Sbjct: 358 YHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAK 417

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           ++LN M+A   C P+A T+++++ G    G  +EA+ + ++ M + G S     Y+ ++ 
Sbjct: 418 EILNRMIASG-CLPNAYTYSSLMKGFFKTGLCEEAVQV-WKEMDKTGCSRNKFCYSVLID 475

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVW---PS 416
           GL  + RV+EA  V++ ML IG+  D+  Y+ +I GLC    +D A + + +++    P 
Sbjct: 476 GLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQEEPK 535

Query: 417 NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
           +  D   Y  ++ GLC    I  AV  L  ++D G  P+++  N  ++
Sbjct: 536 SQPDVVTYNILLDGLCMQKDISRAVDLLNSMLDRGCDPDVITCNTFLN 583



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 104/344 (30%), Positives = 185/344 (53%), Gaps = 3/344 (0%)

Query: 170 LTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKAR 229
           ++P+ +S+N ++  LCK     RA ++     +   LP  +TY  L++GLC E  +++A 
Sbjct: 183 ISPNGLSFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEAV 242

Query: 230 KVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGF 289
            +L  M S+       I N+ +  LC   + T +  ++  M    C P+ +T NT+I+G 
Sbjct: 243 LLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGL 302

Query: 290 CKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSP 349
           C  G++++A+ +L  MV+ K C P+ VT+ T+I GL+   R  +A+ LL   M +RGY  
Sbjct: 303 CLKGKLDKAVSLLERMVSSK-CIPNDVTYGTLINGLVKQRRATDAVRLLSS-MEERGYHL 360

Query: 350 GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFW 409
               Y+ ++ GLF+  + EEA  ++  M   G   +   Y++++DGLC   + +EAK   
Sbjct: 361 NQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEIL 420

Query: 410 DDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKL 469
           + ++    + + Y Y++++KG  ++G   EAV    E+  +G + N  CY+V+IDG C +
Sbjct: 421 NRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGV 480

Query: 470 SMKREAYQILREMRKNGLNPDAVTW-RILDKLHGNRGNDFGLRI 512
              +EA  +  +M   G+ PD V +  I+  L G    D  L++
Sbjct: 481 GRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKL 524



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 113/416 (27%), Positives = 202/416 (48%), Gaps = 9/416 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +  LC L  V  A ++F  M  R  +P+  +Y TL+ G C+   +D A  + DEM+  G 
Sbjct: 194 IKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGC 253

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ + Y+VL+ G+ +  D+ R   L+  ++ +         N   +  L+  LC +G +
Sbjct: 254 SPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLK-----GCVPNEVTYNTLIHGLCLKGKL 308

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           ++   + E M   K +  +   G +I+ L +  R   A R++  M +RG   +   Y+ +
Sbjct: 309 DKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSVL 368

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GL K G    A  L  +  + G  P+   Y VLV+GLC E    +A+++L  M++   
Sbjct: 369 ISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASGC 428

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           +      +  ++         E + V   M +T C  +    + +I+G C +GR++EA+ 
Sbjct: 429 LPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRVKEAMM 488

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQR--GYSPGIVTYNAVL 358
           V + M+      PD V +++II GL  +G +  AL L ++++ Q      P +VTYN +L
Sbjct: 489 VWSKMLTIGI-KPDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNILL 547

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE-SNQLDEAKRFWDDIV 413
            GL   + +  A ++ N ML  G   D  T    ++ L E SN  D+ + F +++V
Sbjct: 548 DGLCMQKDISRAVDLLNSMLDRGCDPDVITCNTFLNTLSEKSNSCDKGRSFLEELV 603



 Score =  161 bits (407), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 116/438 (26%), Positives = 211/438 (48%), Gaps = 34/438 (7%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           MD LC   R+ EA  L  +M+S G  P+ V Y  LI G C+ G++    K+ D M   G 
Sbjct: 229 MDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGC 288

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +PN +TY+ L+ G+     +++A      L ERM   + +  N+  +  L++ L ++   
Sbjct: 289 VPNEVTYNTLIHGLCLKGKLDKA----VSLLERMVSSKCIP-NDVTYGTLINGLVKQRRA 343

Query: 121 NEVFRIAEDMPQ-GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
            +  R+   M + G  +N+      +I  L + G+   A  +   M ++G  P++V Y+ 
Sbjct: 344 TDAVRLLSSMEERGYHLNQHIY-SVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSV 402

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           +V GLC+ G    A ++L   I  G LP+ +TY  L++G       E+A +V + M  K 
Sbjct: 403 LVDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEM-DKT 461

Query: 240 DVDRTRIC-NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
              R + C ++ +  LC +    E + V   ML    +PD +  +++I G C +G ++ A
Sbjct: 462 GCSRNKFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAA 521

Query: 299 LKVLNDMVAGK--FCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
           LK+ ++M+  +     PD VT+  ++ GL     I  A++LL  ++  RG  P ++T N 
Sbjct: 522 LKLYHEMLCQEEPKSQPDVVTYNILLDGLCMQKDISRAVDLLNSML-DRGCDPDVITCNT 580

Query: 357 VLRG---------------------LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG 395
            L                       L + +RV  A  +   MLG  +   ++T+A+++  
Sbjct: 581 FLNTLSEKSNSCDKGRSFLEELVVRLLKRQRVSGACTIVEVMLGKYLAPKTSTWAMIVRE 640

Query: 396 LCESNQLDEA-KRFWDDI 412
           +C+  +++ A  + W ++
Sbjct: 641 ICKPKKINAAIDKCWRNL 658


>gi|357142290|ref|XP_003572522.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 669

 Score =  184 bits (467), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 135/528 (25%), Positives = 244/528 (46%), Gaps = 52/528 (9%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C   R+ +A ++    K  G   NVV+YT LI+GYCR+G +  A  +   M    V P++
Sbjct: 155 CRDGRLADAERVLEAAKVSGAA-NVVTYTALINGYCRSGRLADALNLIASM---PVAPDT 210

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
            TY+ +++G+   +  E+A  LM ++        +   N   FA  + S C+ G ++   
Sbjct: 211 YTYNTVLKGLCGAKQWEKAEELMEEMIRN-----NCHPNEVTFATQIRSFCQNGLLDHAV 265

Query: 125 RIAEDMPQ----------GKSVNEEFACGHMIDSL----------------------CRS 152
           ++ E MP+             VN     G + D+L                      C +
Sbjct: 266 QLLERMPRYGCTPDVVIYSTLVNGFSEQGRVDDALVLLNTMLCKPNTVCYNAALKGLCMA 325

Query: 153 GRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTY 212
            R      ++  M ++   P+  +++ +   LC+HG    A +++E+  ++G  P    Y
Sbjct: 326 ERWKDVGELIAEMVRKDCPPNEATFSMLTSCLCQHGLVDCAMEVVEQMQKYGCRPDVVIY 385

Query: 213 KVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQ 272
             L+     +  ++ A  +L  ML   D   T   N  L+ALC  +   ++  ++  ML+
Sbjct: 386 NTLINYFSEQGRVDDALMLLDSMLCNPD---TISFNAALKALCRTERWYDVEELIAQMLR 442

Query: 273 TQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQ 332
             C    +T N +I+  C+ G +  A++V   M   + C PD VT++++I G    G ++
Sbjct: 443 EDCPLIEMTFNILIDSLCQHGLVNHAIEVFEQMPKYR-CTPDIVTYSSLINGFSEQGLVE 501

Query: 333 EALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIV 392
            A+ L +Q MP +   P I +YNAVL+GL R  R E+A E+   M       +  T+ I+
Sbjct: 502 SAIEL-FQSMPCK---PDIFSYNAVLKGLCRAARWEDAGELIANMARKDCPPNEITFNIL 557

Query: 393 IDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGV 452
           I+ LC+    D A   +  +    +  D + Y A+I G    G++ +A++ L  +     
Sbjct: 558 INSLCQKGFADRAIEVFKQMPEYGSTPDIFTYNALINGFSEQGRLDDALNLLSTM---SC 614

Query: 453 TPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKL 500
            P+ + YN  + G C+    +EA +I+ EM +    P+ VT++  ++L
Sbjct: 615 KPDAISYNSTLKGLCRAERWKEAEEIVAEMLRKKCPPNEVTFKYANQL 662



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 115/456 (25%), Positives = 200/456 (43%), Gaps = 19/456 (4%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LCG  +  +A +L  +M      PN V++ T I  +C+ G +D A ++ + M   G  P+
Sbjct: 220 LCGAKQWEKAEELMEEMIRNNCHPNEVTFATQIRSFCQNGLLDHAVQLLERMPRYGCTPD 279

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            + YS LV G      V+ A VL+  +            N   +   +  LC      +V
Sbjct: 280 VVIYSTLVNGFSEQGRVDDALVLLNTML--------CKPNTVCYNAALKGLCMAERWKDV 331

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             +  +M +      E     +   LC+ G    A  VV  M+K G  P +V YN++++ 
Sbjct: 332 GELIAEMVRKDCPPNEATFSMLTSCLCQHGLVDCAMEVVEQMQKYGCRPDVVIYNTLINY 391

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
             + G    A  LL+  +     P   ++   ++ LC         +++  ML +     
Sbjct: 392 FSEQGRVDDALMLLDSML---CNPDTISFNAALKALCRTERWYDVEELIAQMLREDCPLI 448

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               NI + +LC        + V   M + +C PD++T +++INGF + G +E A+++  
Sbjct: 449 EMTFNILIDSLCQHGLVNHAIEVFEQMPKYRCTPDIVTYSSLINGFSEQGLVESAIELFQ 508

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            M     C PD  ++  ++ GL    R ++A  L+   M ++   P  +T+N ++  L +
Sbjct: 509 SMP----CKPDIFSYNAVLKGLCRAARWEDAGELIAN-MARKDCPPNEITFNILINSLCQ 563

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
               + A EVF  M   G   D  TY  +I+G  E  +LD+A      +   S   D   
Sbjct: 564 KGFADRAIEVFKQMPEYGSTPDIFTYNALINGFSEQGRLDDALNLLSTM---SCKPDAIS 620

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCY 459
           Y + +KGLCR+ +  EA   + E++     PN V +
Sbjct: 621 YNSTLKGLCRAERWKEAEEIVAEMLRKKCPPNEVTF 656



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 103/413 (24%), Positives = 175/413 (42%), Gaps = 49/413 (11%)

Query: 120 VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           ++   R+   MP  +      AC  +I  LC   R   A RV+  +++ G +   VS+N+
Sbjct: 92  LDAALRLVGSMPSSEPP-AVIACNILIKKLCAHRRLADAERVLDALKESG-SADAVSHNT 149

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           +V G C+ G    A ++LE     G   +  TY  L+ G C    L  A  ++  M    
Sbjct: 150 LVAGYCRDGRLADAERVLEAAKVSGAA-NVVTYTALINGYCRSGRLADALNLIASMPVAP 208

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
           D   T   N  L+ LC  K   +   ++  M++  C P+ +T  T I  FC+ G ++ A+
Sbjct: 209 D---TYTYNTVLKGLCGAKQWEKAEELMEEMIRNNCHPNEVTFATQIRSFCQNGLLDHAV 265

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           ++L  M     C PD V ++T++ G    GR+ +AL LL  ++ +    P  V YNA L+
Sbjct: 266 QLLERM-PRYGCTPDVVIYSTLVNGFSEQGRVDDALVLLNTMLCK----PNTVCYNAALK 320

Query: 360 GLFRLRR-----------------------------------VEEAKEVFNCMLGIGVVA 384
           GL    R                                   V+ A EV   M   G   
Sbjct: 321 GLCMAERWKDVGELIAEMVRKDCPPNEATFSMLTSCLCQHGLVDCAMEVVEQMQKYGCRP 380

Query: 385 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFL 444
           D   Y  +I+   E  ++D+A    D ++      D   + A +K LCR+ + ++    +
Sbjct: 381 DVVIYNTLINYFSEQGRVDDALMLLDSMLCNP---DTISFNAALKALCRTERWYDVEELI 437

Query: 445 YELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            +++        + +N++ID  C+  +   A ++  +M K    PD VT+  L
Sbjct: 438 AQMLREDCPLIEMTFNILIDSLCQHGLVNHAIEVFEQMPKYRCTPDIVTYSSL 490



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 81/315 (25%), Positives = 144/315 (45%), Gaps = 42/315 (13%)

Query: 224 DLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLN 283
           DL+ A +++  M S +       CNI ++ LC  +   +   VL   L+     D ++ N
Sbjct: 91  DLDAALRLVGSMPSSEP-PAVIACNILIKKLCAHRRLADAERVL-DALKESGSADAVSHN 148

Query: 284 TVINGFCKMGRIEEALKVLNDM-VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVM 342
           T++ G+C+ GR+ +A +VL    V+G   A + VT+T +I G    GR+ +ALNL+   M
Sbjct: 149 TLVAGYCRDGRLADAERVLEAAKVSG---AANVVTYTALINGYCRSGRLADALNLIAS-M 204

Query: 343 PQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQL 402
           P    +P   TYN VL+GL   ++ E+A+E+   M+      +  T+A  I   C++  L
Sbjct: 205 P---VAPDTYTYNTVLKGLCGAKQWEKAEELMEEMIRNNCHPNEVTFATQIRSFCQNGLL 261

Query: 403 DEAKRFWD---------DIVWPSNIHDNY-----------------------VYAAMIKG 430
           D A +  +         D+V  S + + +                        Y A +KG
Sbjct: 262 DHAVQLLERMPRYGCTPDVVIYSTLVNGFSEQGRVDDALVLLNTMLCKPNTVCYNAALKG 321

Query: 431 LCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD 490
           LC + +  +    + E+V     PN   ++++    C+  +   A +++ +M+K G  PD
Sbjct: 322 LCMAERWKDVGELIAEMVRKDCPPNEATFSMLTSCLCQHGLVDCAMEVVEQMQKYGCRPD 381

Query: 491 AVTWRILDKLHGNRG 505
            V +  L      +G
Sbjct: 382 VVIYNTLINYFSEQG 396



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 104/213 (48%), Gaps = 11/213 (5%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    V  A ++F  M      P++V+Y++LI+G+   G ++ A ++F  M     
Sbjct: 456 IDSLCQHGLVNHAIEVFEQMPKYRCTPDIVTYSSLINGFSEQGLVESAIELFQSM---PC 512

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+  +Y+ +++G+ R    E A  L+  +  +     D   N   F  L++SLC++G+ 
Sbjct: 513 KPDIFSYNAVLKGLCRAARWEDAGELIANMARK-----DCPPNEITFNILINSLCQKGFA 567

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +    + + MP+  S  + F    +I+     GR   A  ++  M  +   P  +SYNS 
Sbjct: 568 DRAIEVFKQMPEYGSTPDIFTYNALINGFSEQGRLDDALNLLSTMSCK---PDAISYNST 624

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYK 213
           + GLC+      A +++ E ++    P+E T+K
Sbjct: 625 LKGLCRAERWKEAEEIVAEMLRKKCPPNEVTFK 657


>gi|5454208|gb|AAD43623.1|AC005698_22 T3P18.22 [Arabidopsis thaliana]
          Length = 425

 Score =  184 bits (467), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 111/392 (28%), Positives = 195/392 (49%), Gaps = 37/392 (9%)

Query: 106 AFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVM 165
            +  +V+ LC+ G  +  F +   M QGK          +ID LC+      A  +   M
Sbjct: 18  TYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEM 77

Query: 166 RKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDL 225
             +G+ P++V+Y+S++  LC +G    A +LL + I+    P   T+  L++    E  L
Sbjct: 78  ETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKL 137

Query: 226 EKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTV 285
            +A K+   M+ K+ +D                                  P ++T +++
Sbjct: 138 VEAEKLYDEMV-KRSID----------------------------------PSIVTYSSL 162

Query: 286 INGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQR 345
           INGFC   R++EA ++   MV+ K C PD VT+ T+I G     R++E + + ++ M QR
Sbjct: 163 INGFCMHDRLDEAKQMFEFMVS-KHCFPDVVTYNTLIKGFCKYKRVEEGMEV-FREMSQR 220

Query: 346 GYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA 405
           G     VTYN +++GLF+    + A+E+F  M+  GV  +  TY  ++DGLC++ +L++A
Sbjct: 221 GLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKA 280

Query: 406 KRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDG 465
              ++ +         Y Y  MI+G+C++GK+ +       L   GV P++V YN +I G
Sbjct: 281 MVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISG 340

Query: 466 ACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            C+   K EA  + +EM+++G  P++  +  L
Sbjct: 341 FCRKGSKEEADALFKEMKEDGTLPNSGCYNTL 372



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 121/455 (26%), Positives = 213/455 (46%), Gaps = 43/455 (9%)

Query: 51  VFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANL 110
           + D M   G  P+ +TY V+V G+ +  D +    L F L  +M E+  L      +  +
Sbjct: 3   LIDRMVAKGCQPDLVTYGVVVNGLCKRGDTD----LAFNLLNKM-EQGKLEPGVLIYNTI 57

Query: 111 VDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGL 170
           +D LC+  ++++   + ++M              +I  LC  GR   ASR++  M +R +
Sbjct: 58  IDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKI 117

Query: 171 TPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARK 230
            P + ++++++    K G  + A +L +E ++    PS  TY  L+ G C    L++A++
Sbjct: 118 NPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQ 177

Query: 231 VLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFC 290
           + +FM+SK                                    C PDV+T NT+I GFC
Sbjct: 178 MFEFMVSK-----------------------------------HCFPDVVTYNTLIKGFC 202

Query: 291 KMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG 350
           K  R+EE ++V  +M + +    + VT+  +I GL   G    A  + ++ M   G  P 
Sbjct: 203 KYKRVEEGMEVFREM-SQRGLVGNTVTYNILIQGLFQAGDCDMAQEI-FKEMVSDGVPPN 260

Query: 351 IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD 410
           I+TYN +L GL +  ++E+A  VF  +    +     TY I+I+G+C++ ++++    + 
Sbjct: 261 IMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFC 320

Query: 411 DIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLS 470
           ++       D   Y  MI G CR G   EA     E+ + G  PN  CYN +I    +  
Sbjct: 321 NLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDG 380

Query: 471 MKREAYQILREMRKNGLNPDAVTWRIL-DKLHGNR 504
            +  + ++++EMR  G   DA T  ++ + LH  R
Sbjct: 381 DREASAELIKEMRSCGFAGDASTIGLVTNMLHDGR 415



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 96/374 (25%), Positives = 188/374 (50%), Gaps = 7/374 (1%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M ++G  P++V+Y  +++G C+ G+ D+A+ + ++M    + P  L Y+ ++ G+ + + 
Sbjct: 7   MVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKH 66

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
           ++ A      L++ M E + +  N   +++L+  LC  G  ++  R+  DM + K   + 
Sbjct: 67  MDDA----LNLFKEM-ETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDV 121

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
           F    +ID+  + G+   A ++   M KR + PS+V+Y+S+++G C H     A Q+ E 
Sbjct: 122 FTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEF 181

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
            +     P   TY  L++G C    +E+  +V + M  +  V  T   NI ++ L    +
Sbjct: 182 MVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGD 241

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
                 +   M+     P+++T NT+++G CK G++E+A+ V   +   K   P   T+ 
Sbjct: 242 CDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKM-EPTIYTYN 300

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
            +I G+   G++++  +L    +  +G  P +V YN ++ G  R    EEA  +F  M  
Sbjct: 301 IMIEGMCKAGKVEDGWDLFCN-LSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKE 359

Query: 380 IGVVADSTTYAIVI 393
            G + +S  Y  +I
Sbjct: 360 DGTLPNSGCYNTLI 373



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 106/408 (25%), Positives = 191/408 (46%), Gaps = 12/408 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC       A  L   M+     P V+ Y T+I G C+   MD A  +F EM   G+ PN
Sbjct: 26  LCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPN 85

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TYS L+  +        A+ L+  + ER      ++ +   F+ L+D+  +EG + E 
Sbjct: 86  VVTYSSLISCLCNYGRWSDASRLLSDMIER-----KINPDVFTFSALIDAFVKEGKLVEA 140

Query: 124 FRIAEDMPQGKSVNEEFAC-GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
            ++ ++M + +S++        +I+  C   R   A ++   M  +   P +V+YN+++ 
Sbjct: 141 EKLYDEMVK-RSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIK 199

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           G CK+       ++  E  Q G + +  TY +L++GL    D + A+++ + M+S     
Sbjct: 200 GFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPP 259

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
                N  L  LC      + + V  ++ +++ +P + T N +I G CK G++E+   + 
Sbjct: 260 NIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLF 319

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
            ++ + K   PD V + T+I G    G  +EA + L++ M + G  P    YN ++R   
Sbjct: 320 CNL-SLKGVKPDVVAYNTMISGFCRKGSKEEA-DALFKEMKEDGTLPNSGCYNTLIRARL 377

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD 410
           R    E + E+   M   G   D++T  +V + L    +LD  K F D
Sbjct: 378 RDGDREASAELIKEMRSCGFAGDASTIGLVTNML-HDGRLD--KSFLD 422



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 51/87 (58%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ +C   +V +   LF ++  +G  P+VV+Y T+I G+CR G  + A  +F EM+  G 
Sbjct: 303 IEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGT 362

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLM 87
           LPNS  Y+ L+R  LR  D E +  L+
Sbjct: 363 LPNSGCYNTLIRARLRDGDREASAELI 389


>gi|302775071|ref|XP_002970952.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
 gi|300161663|gb|EFJ28278.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
          Length = 698

 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 133/462 (28%), Positives = 229/462 (49%), Gaps = 15/462 (3%)

Query: 27  PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRH-CGVLPNSLTYSVLVRGVLRTRDVERANV 85
           P+V ++  LI GYC   E + A+ V  EM    GV P+  T+++++ G+ ++  V  A +
Sbjct: 152 PDVETWNVLITGYCLAREPEEAFAVIREMEEDFGVAPSLKTHNLVLHGLCKSGKV-LAAM 210

Query: 86  LMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHM 145
             F+   R      + V+ A F+ L++ L + G + +   +A++        +      +
Sbjct: 211 DHFEAVRR-----SMPVSAATFSILINGLVKAGMMIQAHSLAQETTTNGCTIDIHTYTAI 265

Query: 146 IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY 205
           ++ L ++ +   A  ++  +   G TP++ +YN++++GLCK G    A  LL + +  G 
Sbjct: 266 VNWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGC 325

Query: 206 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 265
            P   TY  L++GL  E    +A K+ + M S+     T      +R L       +  +
Sbjct: 326 TPDVVTYTSLIDGLGKEKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQTGKIPQASS 385

Query: 266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 325
           V   M    C PDV+TL+T+I+G  K GRI  A+++   M A +  AP+ V ++ +I GL
Sbjct: 386 VYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEA-RGLAPNEVVYSALIHGL 444

Query: 326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 385
               ++  AL +L Q M +   +P  +TYN ++ GL +   VE A+  F+ ML  G   D
Sbjct: 445 CKARKMDCALEMLAQ-MKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPD 503

Query: 386 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY 445
             TY I+I GLC++   D A    DD+         +VY++++ GLC+SGK+       +
Sbjct: 504 VYTYNILISGLCKAGNTDAACGVLDDMS-----SSRFVYSSLVDGLCKSGKLEGGCMLFH 558

Query: 446 ELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
           E+  SGV  N      +I   CK +   EA  +   +RK G+
Sbjct: 559 EMERSGVA-NSQTRTRLIFHLCKANRVDEAVSLFNAIRKEGM 599



 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 102/329 (31%), Positives = 166/329 (50%), Gaps = 3/329 (0%)

Query: 169 GLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKA 228
           G+ PSL ++N ++HGLCK G  + A    E  ++     S  T+ +L+ GL     + +A
Sbjct: 185 GVAPSLKTHNLVLHGLCKSGKVLAAMDHFE-AVRRSMPVSAATFSILINGLVKAGMMIQA 243

Query: 229 RKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVING 288
             + Q   +             +  L   K   E + ++  +    C P + T N ++NG
Sbjct: 244 HSLAQETTTNGCTIDIHTYTAIVNWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNG 303

Query: 289 FCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYS 348
            CKMGR+EEA+ +L  +V    C PD VT+T++I GL    R  EA  L ++ M  RG +
Sbjct: 304 LCKMGRLEEAIDLLRKIVDNG-CTPDVVTYTSLIDGLGKEKRSFEAYKL-FKEMASRGLA 361

Query: 349 PGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRF 408
              V Y A++RGL +  ++ +A  V+  M   G V D  T + +IDGL ++ ++  A R 
Sbjct: 362 LDTVCYTALIRGLLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRI 421

Query: 409 WDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACK 468
           +  +       +  VY+A+I GLC++ K+  A+  L ++  +  TP+ + YN++IDG CK
Sbjct: 422 FKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCK 481

Query: 469 LSMKREAYQILREMRKNGLNPDAVTWRIL 497
                 A     EM + G  PD  T+ IL
Sbjct: 482 SGDVEAARAFFDEMLEAGCKPDVYTYNIL 510



 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 125/507 (24%), Positives = 224/507 (44%), Gaps = 20/507 (3%)

Query: 4   LCGLSRVGE--AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVL 61
           L GL + G+  A    F+   R    +  +++ LI+G  + G M  A+ +  E    G  
Sbjct: 197 LHGLCKSGKVLAAMDHFEAVRRSMPVSAATFSILINGLVKAGMMIQAHSLAQETTTNGCT 256

Query: 62  PNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVN 121
            +  TY+ +V  + + + ++ A  LM K+          +   A +  L++ LC+ G + 
Sbjct: 257 IDIHTYTAIVNWLAKNKKIQEAVALMEKI-----TANGCTPTIATYNALLNGLCKMGRLE 311

Query: 122 EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
           E   +   +       +      +ID L +  R+  A ++   M  RGL    V Y +++
Sbjct: 312 EAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMASRGLALDTVCYTALI 371

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
            GL + G   +A  + +     G +P   T   +++GL     +  A ++ + M ++   
Sbjct: 372 RGLLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLA 431

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
               + +  +  LC  +     L +L  M +  C PD IT N +I+G CK G +E A   
Sbjct: 432 PNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAF 491

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
            ++M+    C PD  T+  +I GL   G    A  +L  +   R        Y++++ GL
Sbjct: 492 FDEMLEAG-CKPDVYTYNILISGLCKAGNTDAACGVLDDMSSSR------FVYSSLVDGL 544

Query: 362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
            +  ++E    +F+ M   G VA+S T   +I  LC++N++DEA   ++ I      H  
Sbjct: 545 CKSGKLEGGCMLFHEMERSG-VANSQTRTRLIFHLCKANRVDEAVSLFNAIRKEGMPHP- 602

Query: 422 YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
           Y Y ++I  L +SGK++E    +Y+ +     P+ V YN +++G    +    A+    E
Sbjct: 603 YAYNSIISALIKSGKVNEG-QAVYQEMTRWWKPDRVTYNALLNGMIGANRMDRAHYYYLE 661

Query: 482 MRKNGLNPDAVTWRILDKLHGNRGNDF 508
           M   G  P      IL KL  +R  D 
Sbjct: 662 MTGRGYVPPV---SILHKLADDRLKDM 685



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 106/409 (25%), Positives = 189/409 (46%), Gaps = 50/409 (12%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC + R+ EA  L   +   G  P+VV+YT+LI G  +      AYK+F EM   G+
Sbjct: 301 LNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMASRGL 360

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             +++ Y+ L+RG+L+T  + +A+                        ++  ++   G V
Sbjct: 361 ALDTVCYTALIRGLLQTGKIPQAS------------------------SVYKTMTSHGCV 396

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +V  ++                 MID L ++GR   A R+   M  RGL P+ V Y+++
Sbjct: 397 PDVVTLST----------------MIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSAL 440

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +HGLCK      A ++L +  +    P   TY +L++GLC   D+E AR     ML    
Sbjct: 441 IHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGC 500

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                  NI +  LC   N      VL  M  ++        +++++G CK G++E    
Sbjct: 501 KPDVYTYNILISGLCKAGNTDAACGVLDDMSSSR-----FVYSSLVDGLCKSGKLEGGCM 555

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           + ++M   +    ++ T T +IF L    R+ EA++ L+  + + G  P    YN+++  
Sbjct: 556 LFHEM--ERSGVANSQTRTRLIFHLCKANRVDEAVS-LFNAIRKEGM-PHPYAYNSIISA 611

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFW 409
           L +  +V E + V+  M       D  TY  +++G+  +N++D A  ++
Sbjct: 612 LIKSGKVNEGQAVYQEMTRWW-KPDRVTYNALLNGMIGANRMDRAHYYY 659



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 94/364 (25%), Positives = 168/364 (46%), Gaps = 37/364 (10%)

Query: 169 GLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKA 228
           G   S+ + N+++    +      A  LL+  +   + P   T+ VL+ G C   + E+A
Sbjct: 114 GFQHSVHTGNALLDVFARTKRHREAGNLLKNELATIFRPDVETWNVLITGYCLAREPEEA 173

Query: 229 RKVLQFMLSKKDVDRT-RICNIYLRALCLIKN---------------PTE------LLNV 266
             V++ M     V  + +  N+ L  LC                   P        L+N 
Sbjct: 174 FAVIREMEEDFGVAPSLKTHNLVLHGLCKSGKVLAAMDHFEAVRRSMPVSAATFSILING 233

Query: 267 LV---FMLQTQ----------CQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAP 313
           LV    M+Q            C  D+ T   ++N   K  +I+EA+ ++  + A   C P
Sbjct: 234 LVKAGMMIQAHSLAQETTTNGCTIDIHTYTAIVNWLAKNKKIQEAVALMEKITANG-CTP 292

Query: 314 DAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEV 373
              T+  ++ GL  +GR++EA++LL +++   G +P +VTY +++ GL + +R  EA ++
Sbjct: 293 TIATYNALLNGLCKMGRLEEAIDLLRKIV-DNGCTPDVVTYTSLIDGLGKEKRSFEAYKL 351

Query: 374 FNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR 433
           F  M   G+  D+  Y  +I GL ++ ++ +A   +  +     + D    + MI GL +
Sbjct: 352 FKEMASRGLALDTVCYTALIRGLLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSK 411

Query: 434 SGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVT 493
           +G+I  AV     +   G+ PN V Y+ +I G CK      A ++L +M+K    PD +T
Sbjct: 412 AGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTIT 471

Query: 494 WRIL 497
           + IL
Sbjct: 472 YNIL 475



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 85/176 (48%), Gaps = 15/176 (8%)

Query: 338 LYQVM--PQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG 395
           L+Q +  P+ G+   + T NA+L    R +R  EA  +    L      D  T+ ++I G
Sbjct: 104 LFQCLSSPRFGFQHSVHTGNALLDVFARTKRHREAGNLLKNELATIFRPDVETWNVLITG 163

Query: 396 LCESNQLDEA----KRFWDDI-VWPSNIHDNYVYAAMIKGLCRSGKIHEAV-HFLYELVD 449
            C + + +EA    +   +D  V PS    N V    + GLC+SGK+  A+ HF  E V 
Sbjct: 164 YCLAREPEEAFAVIREMEEDFGVAPSLKTHNLV----LHGLCKSGKVLAAMDHF--EAVR 217

Query: 450 SGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWR-ILDKLHGNR 504
             +  +   ++++I+G  K  M  +A+ + +E   NG   D  T+  I++ L  N+
Sbjct: 218 RSMPVSAATFSILINGLVKAGMMIQAHSLAQETTTNGCTIDIHTYTAIVNWLAKNK 273


>gi|224053663|ref|XP_002297917.1| predicted protein [Populus trichocarpa]
 gi|222845175|gb|EEE82722.1| predicted protein [Populus trichocarpa]
          Length = 670

 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 129/472 (27%), Positives = 229/472 (48%), Gaps = 11/472 (2%)

Query: 31  SYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKL 90
           ++ +LI+ Y   G+     KV D M+    +     + V+ +   +    E+A      L
Sbjct: 92  TFYSLINNYANLGDFKSLEKVLDRMKCEKRVIFEKCFIVIFKAYGKAHLPEKA----VDL 147

Query: 91  WERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVN---EEFACGHMID 147
           ++RM  E +      +F ++++ + +EG  +        +   K V+          +I 
Sbjct: 148 FDRMACEFECKRTGKSFNSVLNVIIQEGLFHRALEFYNHVIGAKGVSISPNVLTFNLVIK 207

Query: 148 SLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLP 207
           ++C+ G    A +V   M  R   P + +Y +++ GLCK      A  LL+E    G  P
Sbjct: 208 AMCKVGLVDDAIQVFRDMTIRKCEPDVYTYCTLMDGLCKADRIDEAVSLLDEMQIDGCFP 267

Query: 208 SEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVL 267
           S  T+ VL+ GLC + DL +A K++  M  K  +      N  +  LCL     + +++L
Sbjct: 268 SPVTFNVLINGLCKKGDLSRAAKLVDNMFLKGCIPNEVTYNTLIHGLCLKGKLEKAISLL 327

Query: 268 VFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLN 327
             M+ ++C P+V+T  T+ING  K GR  +   VL  M    +C  + V ++T+I GL  
Sbjct: 328 DRMVSSKCVPNVVTYGTIINGLVKQGRALDGACVLALMEERGYCVNEYV-YSTLISGLFK 386

Query: 328 VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADST 387
            G+ QEA++ L++ M  +GY    + Y+AV+ GL R  + ++A EV + M   G   ++ 
Sbjct: 387 EGKSQEAMH-LFKEMTVKGYELNTIVYSAVIDGLCRDGKPDDAVEVLSEMTNKGCTPNAY 445

Query: 388 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYEL 447
           T + ++ G  E+     A   W D+   +   +   Y+ +I GLC+ GK+ EA+    ++
Sbjct: 446 TCSSLMKGFFEAGNSHRAVEVWKDMAKHNFTQNEVCYSVLIHGLCKDGKVKEAMMVWTQM 505

Query: 448 VDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLN--PDAVTWRIL 497
           +  G  P++V Y+ +I+G     +  +A Q+  EM   G +  PD VT+ IL
Sbjct: 506 LGKGCKPDVVAYSSMINGLSIAGLVEDAMQLYNEMLCQGPDSQPDVVTYNIL 557



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 112/412 (27%), Positives = 202/412 (49%), Gaps = 8/412 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           +C +  V +A ++F DM  R   P+V +Y TL+ G C+   +D A  + DEM+  G  P+
Sbjct: 209 MCKVGLVDDAIQVFRDMTIRKCEPDVYTYCTLMDGLCKADRIDEAVSLLDEMQIDGCFPS 268

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +T++VL+ G+ +  D+ RA  L+  ++ +         N   +  L+  LC +G + + 
Sbjct: 269 PVTFNVLINGLCKKGDLSRAAKLVDNMFLK-----GCIPNEVTYNTLIHGLCLKGKLEKA 323

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             + + M   K V      G +I+ L + GR    + V+ +M +RG   +   Y++++ G
Sbjct: 324 ISLLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGACVLALMEERGYCVNEYVYSTLISG 383

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           L K G    A  L +E    GY  +   Y  +++GLC +   + A +VL  M +K     
Sbjct: 384 LFKEGKSQEAMHLFKEMTVKGYELNTIVYSAVIDGLCRDGKPDDAVEVLSEMTNKGCTPN 443

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
              C+  ++      N    + V   M +     + +  + +I+G CK G+++EA+ V  
Sbjct: 444 AYTCSSLMKGFFEAGNSHRAVEVWKDMAKHNFTQNEVCYSVLIHGLCKDGKVKEAMMVWT 503

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYS-PGIVTYNAVLRGLF 362
            M+ GK C PD V ++++I GL   G +++A+ L  +++ Q   S P +VTYN +L  L 
Sbjct: 504 QML-GKGCKPDVVAYSSMINGLSIAGLVEDAMQLYNEMLCQGPDSQPDVVTYNILLNTLC 562

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCES-NQLDEAKRFWDDIV 413
           +   +  A ++ N ML  G   D  T  I +  L E  +   + + F D++V
Sbjct: 563 KQSSISRAIDLLNSMLDRGCDPDLVTCTIFLRMLREKLDPPQDGREFLDELV 614



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 113/436 (25%), Positives = 210/436 (48%), Gaps = 37/436 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           MD LC   R+ EA  L  +M+  G  P+ V++  LI+G C+ G++  A K+ D M   G 
Sbjct: 241 MDGLCKADRIDEAVSLLDEMQIDGCFPSPVTFNVLINGLCKKGDLSRAAKLVDNMFLKGC 300

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +PN +TY+ L+ G+     +E+A      L +RM   + +  N   +  +++ L ++G  
Sbjct: 301 IPNEVTYNTLIHGLCLKGKLEKA----ISLLDRMVSSKCVP-NVVTYGTIINGLVKQGRA 355

Query: 121 NE---VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
            +   V  + E+  +G  VN E+    +I  L + G++  A  +   M  +G   + + Y
Sbjct: 356 LDGACVLALMEE--RGYCVN-EYVYSTLISGLFKEGKSQEAMHLFKEMTVKGYELNTIVY 412

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
           ++++ GLC+ G    A ++L E    G  P+ +T   L++G     +  +A +V + M +
Sbjct: 413 SAVIDGLCRDGKPDDAVEVLSEMTNKGCTPNAYTCSSLMKGFFEAGNSHRAVEVWKDM-A 471

Query: 238 KKDVDRTRIC-NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIE 296
           K +  +  +C ++ +  LC      E + V   ML   C+PDV+  +++ING    G +E
Sbjct: 472 KHNFTQNEVCYSVLIHGLCKDGKVKEAMMVWTQMLGKGCKPDVVAYSSMINGLSIAGLVE 531

Query: 297 EALKVLNDMVA-GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN 355
           +A+++ N+M+  G    PD VT+  ++  L     I  A++LL  ++  RG  P +VT  
Sbjct: 532 DAMQLYNEMLCQGPDSQPDVVTYNILLNTLCKQSSISRAIDLLNSML-DRGCDPDLVTCT 590

Query: 356 AVLR---------------------GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVID 394
             LR                      L + +RV  A ++   ML   +    +T+A V++
Sbjct: 591 IFLRMLREKLDPPQDGREFLDELVVRLLKRQRVLGASKIVEVMLQKLLPPKHSTWARVVE 650

Query: 395 GLCESNQLDEA-KRFW 409
            LC+  ++    ++ W
Sbjct: 651 NLCKPKKVQAVIQKCW 666



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 102/395 (25%), Positives = 194/395 (49%), Gaps = 39/395 (9%)

Query: 100 LSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGAS 159
           +S N   F  ++ ++C+ G V++  ++  DM   K   + +    ++D LC++ R   A 
Sbjct: 195 ISPNVLTFNLVIKAMCKVGLVDDAIQVFRDMTIRKCEPDVYTYCTLMDGLCKADRIDEAV 254

Query: 160 RVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGL 219
            ++  M+  G  PS V++N +++GLCK G   RA +L++     G +P+E TY  L+ GL
Sbjct: 255 SLLDEMQIDGCFPSPVTFNVLINGLCKKGDLSRAAKLVDNMFLKGCIPNEVTYNTLIHGL 314

Query: 220 CGESDLEKARKVLQFMLSKKDV------------------------------DRTRICNI 249
           C +  LEKA  +L  M+S K V                              +R    N 
Sbjct: 315 CLKGKLEKAISLLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGACVLALMEERGYCVNE 374

Query: 250 YLRALC---LIK--NPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
           Y+ +     L K     E +++   M     + + I  + VI+G C+ G+ ++A++VL++
Sbjct: 375 YVYSTLISGLFKEGKSQEAMHLFKEMTVKGYELNTIVYSAVIDGLCRDGKPDDAVEVLSE 434

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
           M   K C P+A T ++++ G    G    A+ + ++ M +  ++   V Y+ ++ GL + 
Sbjct: 435 M-TNKGCTPNAYTCSSLMKGFFEAGNSHRAVEV-WKDMAKHNFTQNEVCYSVLIHGLCKD 492

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVW--PSNIHDNY 422
            +V+EA  V+  MLG G   D   Y+ +I+GL  +  +++A + +++++   P +  D  
Sbjct: 493 GKVKEAMMVWTQMLGKGCKPDVVAYSSMINGLSIAGLVEDAMQLYNEMLCQGPDSQPDVV 552

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIV 457
            Y  ++  LC+   I  A+  L  ++D G  P++V
Sbjct: 553 TYNILLNTLCKQSSISRAIDLLNSMLDRGCDPDLV 587



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 97/381 (25%), Positives = 188/381 (49%), Gaps = 9/381 (2%)

Query: 27  PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVL 86
           PNV+++  +I   C+ G +D A +VF +M      P+  TY  L+ G+ +   ++ A  L
Sbjct: 197 PNVLTFNLVIKAMCKVGLVDDAIQVFRDMTIRKCEPDVYTYCTLMDGLCKADRIDEAVSL 256

Query: 87  MFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMI 146
           + ++     + +    +   F  L++ LC++G ++   ++ ++M     +  E     +I
Sbjct: 257 LDEM-----QIDGCFPSPVTFNVLINGLCKKGDLSRAAKLVDNMFLKGCIPNEVTYNTLI 311

Query: 147 DSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL 206
             LC  G+   A  ++  M      P++V+Y +I++GL K G  +    +L    + GY 
Sbjct: 312 HGLCLKGKLEKAISLLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGACVLALMEERGYC 371

Query: 207 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 266
            +E+ Y  L+ GL  E   ++A  + + M  K     T + +  +  LC    P + + V
Sbjct: 372 VNEYVYSTLISGLFKEGKSQEAMHLFKEMTVKGYELNTIVYSAVIDGLCRDGKPDDAVEV 431

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
           L  M    C P+  T ++++ GF + G    A++V  DM    F   + V ++ +I GL 
Sbjct: 432 LSEMTNKGCTPNAYTCSSLMKGFFEAGNSHRAVEVWKDMAKHNF-TQNEVCYSVLIHGLC 490

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCML--GIGVVA 384
             G+++EA+ +++  M  +G  P +V Y++++ GL     VE+A +++N ML  G     
Sbjct: 491 KDGKVKEAM-MVWTQMLGKGCKPDVVAYSSMINGLSIAGLVEDAMQLYNEMLCQGPDSQP 549

Query: 385 DSTTYAIVIDGLCESNQLDEA 405
           D  TY I+++ LC+ + +  A
Sbjct: 550 DVVTYNILLNTLCKQSSISRA 570



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 82/260 (31%), Positives = 132/260 (50%), Gaps = 4/260 (1%)

Query: 248 NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM-V 306
           N+ ++A+C +    + + V   M   +C+PDV T  T+++G CK  RI+EA+ +L++M +
Sbjct: 203 NLVIKAMCKVGLVDDAIQVFRDMTIRKCEPDVYTYCTLMDGLCKADRIDEAVSLLDEMQI 262

Query: 307 AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 366
            G  C P  VTF  +I GL   G +  A  L+   M  +G  P  VTYN ++ GL    +
Sbjct: 263 DG--CFPSPVTFNVLINGLCKKGDLSRAAKLVDN-MFLKGCIPNEVTYNTLIHGLCLKGK 319

Query: 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAA 426
           +E+A  + + M+    V +  TY  +I+GL +  +  +       +       + YVY+ 
Sbjct: 320 LEKAISLLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGACVLALMEERGYCVNEYVYST 379

Query: 427 MIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG 486
           +I GL + GK  EA+H   E+   G   N + Y+ VIDG C+     +A ++L EM   G
Sbjct: 380 LISGLFKEGKSQEAMHLFKEMTVKGYELNTIVYSAVIDGLCRDGKPDDAVEVLSEMTNKG 439

Query: 487 LNPDAVTWRILDKLHGNRGN 506
             P+A T   L K     GN
Sbjct: 440 CTPNAYTCSSLMKGFFEAGN 459


>gi|224123734|ref|XP_002330195.1| predicted protein [Populus trichocarpa]
 gi|222871651|gb|EEF08782.1| predicted protein [Populus trichocarpa]
          Length = 529

 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 109/364 (29%), Positives = 193/364 (53%), Gaps = 5/364 (1%)

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQ---LLEEGI 201
           +++ LC+ G+ + A  V+  M+  G++P++++YN+++ G CK G   + Y+   +L+E +
Sbjct: 161 VVNGLCKVGKLNRAGDVIEDMKVWGVSPNVITYNTLIDGYCKMGRIGKMYKADAILKEMV 220

Query: 202 QFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPT 261
             G  P+E TY +L++G C + ++  A +V   M  +         NI +  LC      
Sbjct: 221 AKGICPNEVTYNILIDGFCKDENVSGAMRVFGEMQRQGLRPNVVTYNILINGLCSDGKVD 280

Query: 262 ELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTI 321
           E + +   M+ +  +P+V+T N +INGFCK   + EA+ + NDM   +   P+A+T+TT+
Sbjct: 281 EAVALRDQMVSSDLEPNVVTHNVLINGFCKNKTVNEAINLFNDM-EKQGVDPNAMTYTTL 339

Query: 322 IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG 381
           I      GR+++A   LY +M  RG  P + TYN ++ GL R   V+ A+ + N M+   
Sbjct: 340 IDAYCKDGRMEDAF-ALYNMMIDRGIFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVSKK 398

Query: 382 VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAV 441
           + AD  TY I+ID LC+  +  +A +  D++        +  Y  ++ G CR G +  A+
Sbjct: 399 LSADVVTYNILIDSLCKKGESRKAVKLLDEMFEKGLNPSHVTYNTLMDGYCREGNLRAAL 458

Query: 442 HFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLH 501
                +   G   N+V +NV+I G C      +A  +L EM + GL P+  T+ I+ +  
Sbjct: 459 IVRTRMERKGKQANVVTHNVLIKGFCLKGRLEDANGLLNEMLERGLVPNRTTYEIIKEEM 518

Query: 502 GNRG 505
             +G
Sbjct: 519 MEKG 522



 Score =  168 bits (425), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 103/362 (28%), Positives = 182/362 (50%), Gaps = 5/362 (1%)

Query: 141 ACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEG 200
           +C  ++  L +   N     V   M KR +  +++S+N +V+GLCK G   RA  ++E+ 
Sbjct: 122 SCNPLLSGLVKESENGDMEFVYREMIKRKIELNVISFNIVVNGLCKVGKLNRAGDVIEDM 181

Query: 201 IQFGYLPSEHTYKVLVEGLCGES---DLEKARKVLQFMLSKKDVDRTRICNIYLRALCLI 257
             +G  P+  TY  L++G C       + KA  +L+ M++K         NI +   C  
Sbjct: 182 KVWGVSPNVITYNTLIDGYCKMGRIGKMYKADAILKEMVAKGICPNEVTYNILIDGFCKD 241

Query: 258 KNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVT 317
           +N +  + V   M +   +P+V+T N +ING C  G+++EA+ + + MV+     P+ VT
Sbjct: 242 ENVSGAMRVFGEMQRQGLRPNVVTYNILINGLCSDGKVDEAVALRDQMVSSDL-EPNVVT 300

Query: 318 FTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCM 377
              +I G      + EA+NL +  M ++G  P  +TY  ++    +  R+E+A  ++N M
Sbjct: 301 HNVLINGFCKNKTVNEAINL-FNDMEKQGVDPNAMTYTTLIDAYCKDGRMEDAFALYNMM 359

Query: 378 LGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKI 437
           +  G+  + +TY  +I GLC    +  A+   +++V      D   Y  +I  LC+ G+ 
Sbjct: 360 IDRGIFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVSKKLSADVVTYNILIDSLCKKGES 419

Query: 438 HEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            +AV  L E+ + G+ P+ V YN ++DG C+    R A  +   M + G   + VT  +L
Sbjct: 420 RKAVKLLDEMFEKGLNPSHVTYNTLMDGYCREGNLRAALIVRTRMERKGKQANVVTHNVL 479

Query: 498 DK 499
            K
Sbjct: 480 IK 481



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 110/398 (27%), Positives = 190/398 (47%), Gaps = 45/398 (11%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYK---VFDEMRHCGV 60
           LC + ++  A  +  DMK  G  PNV++Y TLI GYC+ G +   YK   +  EM   G+
Sbjct: 165 LCKVGKLNRAGDVIEDMKVWGVSPNVITYNTLIDGYCKMGRIGKMYKADAILKEMVAKGI 224

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +TY++L+ G  +  +V  A     +++  M + + L  N   +  L++ LC +G V
Sbjct: 225 CPNEVTYNILIDGFCKDENVSGA----MRVFGEM-QRQGLRPNVVTYNILINGLCSDGKV 279

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E   + + M              +I+  C++   + A  +   M K+G+ P+ ++Y ++
Sbjct: 280 DEAVALRDQMVSSDLEPNVVTHNVLINGFCKNKTVNEAINLFNDMEKQGVDPNAMTYTTL 339

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +   CK G    A+ L    I  G  P   TY  L+ GLC + D++ AR ++  M+SKK 
Sbjct: 340 IDAYCKDGRMEDAFALYNMMIDRGIFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVSKK- 398

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                                DV+T N +I+  CK G   +A+K
Sbjct: 399 ----------------------------------LSADVVTYNILIDSLCKKGESRKAVK 424

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +L++M   K   P  VT+ T++ G    G ++ AL ++   M ++G    +VT+N +++G
Sbjct: 425 LLDEMFE-KGLNPSHVTYNTLMDGYCREGNLRAAL-IVRTRMERKGKQANVVTHNVLIKG 482

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE 398
                R+E+A  + N ML  G+V + TTY I+ + + E
Sbjct: 483 FCLKGRLEDANGLLNEMLERGLVPNRTTYEIIKEEMME 520



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 94/324 (29%), Positives = 155/324 (47%), Gaps = 9/324 (2%)

Query: 1   MDQLCGLSRVGEAHK---LFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRH 57
           +D  C + R+G+ +K   +  +M ++G  PN V+Y  LI G+C+   +  A +VF EM+ 
Sbjct: 197 IDGYCKMGRIGKMYKADAILKEMVAKGICPNEVTYNILIDGFCKDENVSGAMRVFGEMQR 256

Query: 58  CGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCRE 117
            G+ PN +TY++L+ G+     V+ A  L  ++        DL  N      L++  C+ 
Sbjct: 257 QGLRPNVVTYNILINGLCSDGKVDEAVALRDQMV-----SSDLEPNVVTHNVLINGFCKN 311

Query: 118 GYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
             VNE   +  DM +            +ID+ C+ GR   A  +  +M  RG+ P + +Y
Sbjct: 312 KTVNEAINLFNDMEKQGVDPNAMTYTTLIDAYCKDGRMEDAFALYNMMIDRGIFPEVSTY 371

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
           N ++ GLC+ G    A  L+ E +         TY +L++ LC + +  KA K+L  M  
Sbjct: 372 NCLIAGLCRKGDVKAARSLMNEMVSKKLSADVVTYNILIDSLCKKGESRKAVKLLDEMFE 431

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
           K         N  +   C   N    L V   M +   Q +V+T N +I GFC  GR+E+
Sbjct: 432 KGLNPSHVTYNTLMDGYCREGNLRAALIVRTRMERKGKQANVVTHNVLIKGFCLKGRLED 491

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTI 321
           A  +LN+M+  +   P+  T+  I
Sbjct: 492 ANGLLNEMLE-RGLVPNRTTYEII 514


>gi|242067341|ref|XP_002448947.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
 gi|241934790|gb|EES07935.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
          Length = 797

 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 124/491 (25%), Positives = 228/491 (46%), Gaps = 19/491 (3%)

Query: 4   LCGLSRVGEAHKLFFD-MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEM-----RH 57
           LC   R+ EA  +    M   G  P+VVSY TL+ G+C     + A ++   M     R 
Sbjct: 139 LCDAKRLREAMDILIKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRS 198

Query: 58  CGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCRE 117
           C   PN ++Y+ ++ G      V++A  L  ++ +R      +  N   +  ++D LC+ 
Sbjct: 199 CP--PNVVSYATVINGFFTEGQVDKAYNLFLEMMDR-----GIQPNVVTYTTVIDGLCKA 251

Query: 118 GYVNEVFRIAEDMPQG--KSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLV 175
             V+    + + M     K  N+ + C  +I      G+     R++  M   GL P   
Sbjct: 252 QVVDRAEGVFQQMIDKGVKPDNDTYNC--LIHGYLSIGKWKEVVRMLEEMSAHGLKPDCY 309

Query: 176 SYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM 235
           +Y S+++ LC +G C  A    +  I+ G  P+   Y +L+ G   +  L +   +L  M
Sbjct: 310 TYGSLLNYLCNNGRCREARFFFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLM 369

Query: 236 LSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 295
           +         I NI   A        E +++   M Q    PDV+    +I+  CK+GR+
Sbjct: 370 VENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNFGALIDALCKLGRV 429

Query: 296 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN 355
           ++A+   N M+  +  AP+   F ++++GL  V + ++A    ++++ Q G  P +V +N
Sbjct: 430 DDAVLKFNQMM-NEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQ-GIRPDVVFFN 487

Query: 356 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP 415
            +L  L    +V +A+ + + M  +G   D  +Y  +I G C   ++DEA +  D ++  
Sbjct: 488 TILCNLCTKGQVMKAQRLIDLMERVGTRPDVISYTTLIGGHCLVGRIDEAAKSLDVMLSV 547

Query: 416 SNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREA 475
               D + Y  ++ G CR+G+I +A     E++ +G+TP +V Y+ ++ G        EA
Sbjct: 548 GLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEA 607

Query: 476 YQILREMRKNG 486
            ++   M  +G
Sbjct: 608 KELYLNMITSG 618



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 133/531 (25%), Positives = 236/531 (44%), Gaps = 49/531 (9%)

Query: 4   LCGLSRVGEAHKLFF---DMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
            C   R  EA +L     D + R   PNVVSY T+I+G+   G++D AY +F EM   G+
Sbjct: 175 FCNEKRAEEALELLHMMADSQGRSCPPNVVSYATVINGFFTEGQVDKAYNLFLEMMDRGI 234

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +TY+ ++ G+ + + V+RA  +  ++ ++      +  +N  +  L+      G  
Sbjct: 235 QPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDK-----GVKPDNDTYNCLIHGYLSIGKW 289

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            EV R+ E+M       + +  G +++ LC +GR   A      M ++G+ P++  Y  +
Sbjct: 290 KEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFFFDSMIRKGIKPNVAIYGIL 349

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKV-------------------------- 214
           +HG    G     + LL   ++ G  P  H + +                          
Sbjct: 350 IHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGL 409

Query: 215 ---------LVEGLCGESDLEKARKVLQF--MLSKKDVDRTRICNIYLRALCLIKNPTEL 263
                    L++ LC    ++ A  VL+F  M+++       + N  +  LC +    + 
Sbjct: 410 SPDVVNFGALIDALCKLGRVDDA--VLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKA 467

Query: 264 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF 323
                 ML    +PDV+  NT++   C  G++ +A +++ D++      PD +++TT+I 
Sbjct: 468 KEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLI-DLMERVGTRPDVISYTTLIG 526

Query: 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 383
           G   VGRI EA   L  VM   G  P   TYN +L G  R  R+++A  VF  ML  G+ 
Sbjct: 527 GHCLVGRIDEAAKSL-DVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGIT 585

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
               TY+ ++ GL  + +  EAK  + +++      + ++Y  ++ GL ++  + EA   
Sbjct: 586 PGVVTYSTILHGLFTTRRFSEAKELYLNMITSGKQWNIWIYNIILNGLSKNNCVDEAFKL 645

Query: 444 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
              L        I  +N++I    K     +A  +   +   GL PD  T+
Sbjct: 646 FQSLCSKDFQLEITTFNIMIGALFKSGRNEDAMHLFATISSYGLVPDVFTY 696



 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 129/504 (25%), Positives = 236/504 (46%), Gaps = 18/504 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    V  A  +F  M  +G  P+  +Y  LIHGY   G+     ++ +EM   G+
Sbjct: 245 IDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGL 304

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+  TY  L+  +        A      +  +      +  N A +  L+     +G +
Sbjct: 305 KPDCYTYGSLLNYLCNNGRCREARFFFDSMIRK-----GIKPNVAIYGILIHGYATKGAL 359

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E+  +   M +     +      +  +  +      A  +   M+++GL+P +V++ ++
Sbjct: 360 SEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNFGAL 419

Query: 181 VHGLCKHG----GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFML 236
           +  LCK G      ++  Q++ EG+     P+   +  LV GLC     EKA++    ML
Sbjct: 420 IDALCKLGRVDDAVLKFNQMMNEGVA----PNIFVFNSLVYGLCTVDKWEKAKEFYFEML 475

Query: 237 SKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIE 296
           ++         N  L  LC      +   ++  M +   +PDVI+  T+I G C +GRI+
Sbjct: 476 NQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPDVISYTTLIGGHCLVGRID 535

Query: 297 EALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
           EA K L+ M++     PD  T+ T++ G    GRI +A   +++ M + G +PG+VTY+ 
Sbjct: 536 EAAKSLDVMLSVGL-KPDEWTYNTLLHGYCRAGRIDDAYG-VFREMLRNGITPGVVTYST 593

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416
           +L GLF  RR  EAKE++  M+  G   +   Y I+++GL ++N +DEA + +  +    
Sbjct: 594 ILHGLFTTRRFSEAKELYLNMITSGKQWNIWIYNIILNGLSKNNCVDEAFKLFQSLCSKD 653

Query: 417 NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAY 476
              +   +  MI  L +SG+  +A+H    +   G+ P++  Y ++ +   +     E  
Sbjct: 654 FQLEITTFNIMIGALFKSGRNEDAMHLFATISSYGLVPDVFTYCLIAENLIEEGYLEEFD 713

Query: 477 QILREMRKNGLNPDAVTWRILDKL 500
            +   M K+G  P++   R+L+ L
Sbjct: 714 DLFSAMEKSGTTPNS---RMLNAL 734



 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 121/464 (26%), Positives = 207/464 (44%), Gaps = 44/464 (9%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   R  EA   F  M  +G  PNV  Y  LIHGY   G +   + + + M   G+
Sbjct: 315 LNYLCNNGRCREARFFFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGL 374

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+   ++++     +   ++ A      ++ +MK++  LS +   F  L+D+LC+ G V
Sbjct: 375 SPDHHIFNIIFTAYAKKAMIDEA----MHIFNKMKQQ-GLSPDVVNFGALIDALCKLGRV 429

Query: 121 NE-VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           ++ V +  + M +G + N  F    ++  LC   +   A    + M  +G+ P +V +N+
Sbjct: 430 DDAVLKFNQMMNEGVAPNI-FVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNT 488

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           I+  LC  G  M+A +L++   + G  P   +Y  L+ G C    +++A K L  MLS  
Sbjct: 489 ILCNLCTKGQVMKAQRLIDLMERVGTRPDVISYTTLIGGHCLVGRIDEAAKSLDVMLS-- 546

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                                               +PD  T NT+++G+C+ GRI++A 
Sbjct: 547 ---------------------------------VGLKPDEWTYNTLLHGYCRAGRIDDAY 573

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
            V  +M+      P  VT++TI+ GL    R  EA  L Y  M   G    I  YN +L 
Sbjct: 574 GVFREMLRNGI-TPGVVTYSTILHGLFTTRRFSEAKEL-YLNMITSGKQWNIWIYNIILN 631

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
           GL +   V+EA ++F  +       + TT+ I+I  L +S + ++A   +  I     + 
Sbjct: 632 GLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALFKSGRNEDAMHLFATISSYGLVP 691

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463
           D + Y  + + L   G + E       +  SG TPN    N ++
Sbjct: 692 DVFTYCLIAENLIEEGYLEEFDDLFSAMEKSGTTPNSRMLNALV 735



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 128/515 (24%), Positives = 223/515 (43%), Gaps = 46/515 (8%)

Query: 26  VPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANV 85
            P++ +Y+ LI  +CR G ++  +  F  +   G   N++  + L++G+    D +R   
Sbjct: 91  TPDLCTYSILIGCFCRMGRLEHGFATFGLILKSGWRVNNIVINQLLKGLC---DAKRLRE 147

Query: 86  LMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP--QGKSVNEEFAC- 142
            M  L +RM E    + +  ++  L+   C E    E   +   M   QG+S        
Sbjct: 148 AMDILIKRMPEL-GCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSY 206

Query: 143 GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQ 202
             +I+     G+   A  +   M  RG+ P++V+Y +++ GLCK     RA  + ++ I 
Sbjct: 207 ATVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMID 266

Query: 203 FGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTE 262
            G  P   TY  L+ G       ++  ++L+ M +             L  LC      E
Sbjct: 267 KGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCRE 326

Query: 263 LLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTII 322
                  M++   +P+V     +I+G+   G + E   +LN MV     +PD   F  I 
Sbjct: 327 ARFFFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGL-SPDHHIFNIIF 385

Query: 323 FGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGV 382
                   I EA+++ +  M Q+G SP +V + A++  L +L RV++A   FN M+  GV
Sbjct: 386 TAYAKKAMIDEAMHI-FNKMKQQGLSPDVVNFGALIDALCKLGRVDDAVLKFNQMMNEGV 444

Query: 383 VADSTTYAIVIDGLCESNQLDEAKRFW---------DDIVWPSNI--------------- 418
             +   +  ++ GLC  ++ ++AK F+          D+V+ + I               
Sbjct: 445 APNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQR 504

Query: 419 -----------HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGAC 467
                       D   Y  +I G C  G+I EA   L  ++  G+ P+   YN ++ G C
Sbjct: 505 LIDLMERVGTRPDVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYC 564

Query: 468 KLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
           +     +AY + REM +NG+ P  VT+  +  LHG
Sbjct: 565 RAGRIDDAYGVFREMLRNGITPGVVTYSTI--LHG 597



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 93/330 (28%), Positives = 155/330 (46%), Gaps = 37/330 (11%)

Query: 170 LTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKAR 229
           +TP L +Y+ ++   C+ G     +      ++ G+  +      L++GLC    L +A 
Sbjct: 90  VTPDLCTYSILIGCFCRMGRLEHGFATFGLILKSGWRVNNIVINQLLKGLCDAKRLREAM 149

Query: 230 KVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGF 289
            +                        LIK   EL           C PDV++ NT++ GF
Sbjct: 150 DI------------------------LIKRMPEL----------GCTPDVVSYNTLLKGF 175

Query: 290 CKMGRIEEALKVLNDMV--AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGY 347
           C   R EEAL++L+ M    G+ C P+ V++ T+I G    G++ +A NL  ++M  RG 
Sbjct: 176 CNEKRAEEALELLHMMADSQGRSCPPNVVSYATVINGFFTEGQVDKAYNLFLEMM-DRGI 234

Query: 348 SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKR 407
            P +VTY  V+ GL + + V+ A+ VF  M+  GV  D+ TY  +I G     +  E  R
Sbjct: 235 QPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVR 294

Query: 408 FWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGAC 467
             +++       D Y Y +++  LC +G+  EA  F   ++  G+ PN+  Y ++I G  
Sbjct: 295 MLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFFFDSMIRKGIKPNVAIYGILIHGYA 354

Query: 468 KLSMKREAYQILREMRKNGLNPDAVTWRIL 497
                 E + +L  M +NGL+PD   + I+
Sbjct: 355 TKGALSEMHDLLNLMVENGLSPDHHIFNII 384



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 123/237 (51%), Gaps = 6/237 (2%)

Query: 262 ELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTI 321
            L N ++     +  PD+ T + +I  FC+MGR+E        ++   +   + +    +
Sbjct: 77  SLFNRMIRECTIKVTPDLCTYSILIGCFCRMGRLEHGFATFGLILKSGW-RVNNIVINQL 135

Query: 322 IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCML--- 378
           + GL +  R++EA+++L + MP+ G +P +V+YN +L+G    +R EEA E+ + M    
Sbjct: 136 LKGLCDAKRLREAMDILIKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQ 195

Query: 379 GIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV-YAAMIKGLCRSGKI 437
           G     +  +YA VI+G     Q+D+A   + +++    I  N V Y  +I GLC++  +
Sbjct: 196 GRSCPPNVVSYATVINGFFTEGQVDKAYNLFLEMM-DRGIQPNVVTYTTVIDGLCKAQVV 254

Query: 438 HEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
             A     +++D GV P+   YN +I G   +   +E  ++L EM  +GL PD  T+
Sbjct: 255 DRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTY 311



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 88/393 (22%), Positives = 163/393 (41%), Gaps = 42/393 (10%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC L RV +A   F  M + G  PN+  + +L++G C   + + A + + EM + G+
Sbjct: 420 IDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGI 479

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +                                         F  ++ +LC +G V
Sbjct: 480 RPDVV----------------------------------------FFNTILCNLCTKGQV 499

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +  R+ + M +  +  +  +   +I   C  GR   A++ + VM   GL P   +YN++
Sbjct: 500 MKAQRLIDLMERVGTRPDVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTL 559

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +HG C+ G    AY +  E ++ G  P   TY  ++ GL       +A+++   M++   
Sbjct: 560 LHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEAKELYLNMITSGK 619

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                I NI L  L       E   +   +     Q ++ T N +I    K GR E+A+ 
Sbjct: 620 QWNIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALFKSGRNEDAMH 679

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +    ++     PD  T+  I   L+  G ++E  + L+  M + G +P     NA++R 
Sbjct: 680 LFA-TISSYGLVPDVFTYCLIAENLIEEGYLEE-FDDLFSAMEKSGTTPNSRMLNALVRR 737

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVI 393
           L     +  A    + +       +++T A++I
Sbjct: 738 LLHRGDITRAGAYLSKLDEKNFSLEASTTAMLI 770



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 5/120 (4%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           R  +A  LF  + S G VP+V +Y  +       G ++    +F  M   G  PNS   +
Sbjct: 673 RNEDAMHLFATISSYGLVPDVFTYCLIAENLIEEGYLEEFDDLFSAMEKSGTTPNSRMLN 732

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
            LVR +L   D+ RA   + KL     +E++ S+  +  A L+  L R+ Y +    + E
Sbjct: 733 ALVRRLLHRGDITRAGAYLSKL-----DEKNFSLEASTTAMLISLLSRDEYHHHATSLPE 787


>gi|90657590|gb|ABD96889.1| hypothetical protein [Cleome spinosa]
          Length = 719

 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 124/490 (25%), Positives = 223/490 (45%), Gaps = 9/490 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LCG+  + EA +++F +K  G   ++V+  +++ G  + G+ ++ ++ + EM   G   +
Sbjct: 166 LCGVGFIEEAIEVYFQLKEAGIRISIVACNSILSGCLKAGKTELLFEFYQEMIKAGTASD 225

Query: 64  SLTYSV--LVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVN 121
           + T +V  L++    +  V R   L+ +  +       L   N  +  L+   C+     
Sbjct: 226 ANTETVGCLIQAFCDSGQVARGYELLNQFLKT-----GLDPGNPTYNKLIAGFCQAKNYA 280

Query: 122 EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
            +  +   M     +   +    +I+ LC++     A RV   ++ RG  P  V Y +++
Sbjct: 281 SMSEVLHTMIARNHLPTIYTYQEIINGLCKNEECLEAYRVFNDLKDRGYAPDRVMYTTMI 340

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
           HGLC+ G    A +L  E +  G  P+ +TY  ++ G     D E+A ++   M +K   
Sbjct: 341 HGLCEMGSFGEARKLWFEMMDKGMQPNAYTYNTMLHGSLKSGDFERACELYNEMCNKGYG 400

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
             T  CN  +  LC      E   V   M +T  Q D IT N++I GFCK G+++E + +
Sbjct: 401 TTTVTCNKIISELCSRGKSDEAFEVFKKMSETGIQADAITYNSLIRGFCKEGKVDERMNL 460

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
           LN++VA +   P    +  +I      G  + A  LL   M  +G  P   TY+ +L G 
Sbjct: 461 LNELVA-QDPQPSVSLYELLIIKSCKDGDFEAAKRLLGD-MSSKGLHPNAYTYDTMLHGS 518

Query: 362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
            +    E  +E++N     G    + T   +I  LC   + DEA   +  +       D 
Sbjct: 519 LKSGDFEHVRELYNETCNKGYGTTTATCNKIISELCSRGKSDEASEMFKKMSETGIKADA 578

Query: 422 YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
             Y ++I+G C+ GK+ ++++ L ELV  G+ P+   Y  +I   C+      A ++  +
Sbjct: 579 ITYNSLIRGFCKEGKVGKSMNLLNELVAQGLQPSASSYASLIIQLCQNGDAESAKRLWGD 638

Query: 482 MRKNGLNPDA 491
           M   G+ P A
Sbjct: 639 MVSKGIEPHA 648



 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 113/387 (29%), Positives = 182/387 (47%), Gaps = 15/387 (3%)

Query: 126 IAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLC 185
           IA  +P   S+ +   C      LC  G    A  V + +++ G+  S+V+ NSI+ G  
Sbjct: 149 IAGFIPDSASLEQYVKC------LCGVGFIEEAIEVYFQLKEAGIRISIVACNSILSGCL 202

Query: 186 KHGGCMRAYQLLEEGIQFGYLPSEHTYKV--LVEGLCGESDLEKARKVL-QFMLSKKDVD 242
           K G     ++  +E I+ G     +T  V  L++  C    + +  ++L QF+ +  D  
Sbjct: 203 KAGKTELLFEFYQEMIKAGTASDANTETVGCLIQAFCDSGQVARGYELLNQFLKTGLDPG 262

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
                N  +   C  KN   +  VL  M+     P + T   +ING CK     EA +V 
Sbjct: 263 NPTY-NKLIAGFCQAKNYASMSEVLHTMIARNHLPTIYTYQEIINGLCKNEECLEAYRVF 321

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
           ND+    + APD V +TT+I GL  +G   EA  L +++M  +G  P   TYN +L G  
Sbjct: 322 NDLKDRGY-APDRVMYTTMIHGLCEMGSFGEARKLWFEMM-DKGMQPNAYTYNTMLHGSL 379

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
           +    E A E++N M   G    + T   +I  LC   + DEA   +  +       D  
Sbjct: 380 KSGDFERACELYNEMCNKGYGTTTVTCNKIISELCSRGKSDEAFEVFKKMSETGIQADAI 439

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
            Y ++I+G C+ GK+ E ++ L ELV     P++  Y ++I  +CK      A ++L +M
Sbjct: 440 TYNSLIRGFCKEGKVDERMNLLNELVAQDPQPSVSLYELLIIKSCKDGDFEAAKRLLGDM 499

Query: 483 RKNGLNPDAVTWRILDKLHGN-RGNDF 508
              GL+P+A T+  +  LHG+ +  DF
Sbjct: 500 SSKGLHPNAYTYDTM--LHGSLKSGDF 524



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 108/482 (22%), Positives = 204/482 (42%), Gaps = 21/482 (4%)

Query: 24  GHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERA 83
           G +P+  S    +   C  G ++ A +V+ +++  G+  + +  + ++ G L+    E  
Sbjct: 151 GFIPDSASLEQYVKCLCGVGFIEEAIEVYFQLKEAGIRISIVACNSILSGCLKAGKTE-- 208

Query: 84  NVLMFKLWERM-KEEEDLSVNNAAFANLVDSLCREGYV-------NEVFRIAEDMPQGKS 135
             L+F+ ++ M K       N      L+ + C  G V       N+  +   D P   +
Sbjct: 209 --LLFEFYQEMIKAGTASDANTETVGCLIQAFCDSGQVARGYELLNQFLKTGLD-PGNPT 265

Query: 136 VNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQ 195
            N+      +I   C++      S V++ M  R   P++ +Y  I++GLCK+  C+ AY+
Sbjct: 266 YNK------LIAGFCQAKNYASMSEVLHTMIARNHLPTIYTYQEIINGLCKNEECLEAYR 319

Query: 196 LLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALC 255
           +  +    GY P    Y  ++ GLC      +ARK+   M+ K         N  L    
Sbjct: 320 VFNDLKDRGYAPDRVMYTTMIHGLCEMGSFGEARKLWFEMMDKGMQPNAYTYNTMLHGSL 379

Query: 256 LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA 315
              +      +   M         +T N +I+  C  G+ +EA +V   M      A DA
Sbjct: 380 KSGDFERACELYNEMCNKGYGTTTVTCNKIISELCSRGKSDEAFEVFKKMSETGIQA-DA 438

Query: 316 VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN 375
           +T+ ++I G    G++ E +NLL +++ Q    P +  Y  ++    +    E AK +  
Sbjct: 439 ITYNSLIRGFCKEGKVDERMNLLNELVAQDP-QPSVSLYELLIIKSCKDGDFEAAKRLLG 497

Query: 376 CMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG 435
            M   G+  ++ TY  ++ G  +S   +  +  +++               +I  LC  G
Sbjct: 498 DMSSKGLHPNAYTYDTMLHGSLKSGDFEHVRELYNETCNKGYGTTTATCNKIISELCSRG 557

Query: 436 KIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWR 495
           K  EA     ++ ++G+  + + YN +I G CK     ++  +L E+   GL P A ++ 
Sbjct: 558 KSDEASEMFKKMSETGIKADAITYNSLIRGFCKEGKVGKSMNLLNELVAQGLQPSASSYA 617

Query: 496 IL 497
            L
Sbjct: 618 SL 619



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 85/331 (25%), Positives = 143/331 (43%), Gaps = 11/331 (3%)

Query: 171 TPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARK 230
           TP  +S N +   L      +RA +++ +    G++P   + +  V+ LCG   +E+A +
Sbjct: 121 TPDPISSNMLFEALL-DAKAVRAAKMVRDIA--GFIPDSASLEQYVKCLCGVGFIEEAIE 177

Query: 231 VLQFMLSKKDVDRTRI-CNIYLRALCLIKNPTELLNVL---VFMLQTQCQPDVITLNTVI 286
           V  F L +  +  + + CN  L   CL    TELL      +    T    +  T+  +I
Sbjct: 178 VY-FQLKEAGIRISIVACNSILSG-CLKAGKTELLFEFYQEMIKAGTASDANTETVGCLI 235

Query: 287 NGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
             FC  G++    ++LN  +      P   T+  +I G            +L+  M  R 
Sbjct: 236 QAFCDSGQVARGYELLNQFLKTGL-DPGNPTYNKLIAGFCQAKNYASMSEVLH-TMIARN 293

Query: 347 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
           + P I TY  ++ GL +     EA  VFN +   G   D   Y  +I GLCE     EA+
Sbjct: 294 HLPTIYTYQEIINGLCKNEECLEAYRVFNDLKDRGYAPDRVMYTTMIHGLCEMGSFGEAR 353

Query: 407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466
           + W +++      + Y Y  M+ G  +SG    A     E+ + G     V  N +I   
Sbjct: 354 KLWFEMMDKGMQPNAYTYNTMLHGSLKSGDFERACELYNEMCNKGYGTTTVTCNKIISEL 413

Query: 467 CKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           C      EA+++ ++M + G+  DA+T+  L
Sbjct: 414 CSRGKSDEAFEVFKKMSETGIQADAITYNSL 444



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 84/345 (24%), Positives = 143/345 (41%), Gaps = 77/345 (22%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHG------------------------- 38
           LC +   GEA KL+F+M  +G  PN  +Y T++HG                         
Sbjct: 343 LCEMGSFGEARKLWFEMMDKGMQPNAYTYNTMLHGSLKSGDFERACELYNEMCNKGYGTT 402

Query: 39  ----------YCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDV-ERANVLM 87
                      C  G+ D A++VF +M   G+  +++TY+ L+RG  +   V ER N+L 
Sbjct: 403 TVTCNKIISELCSRGKSDEAFEVFKKMSETGIQADAITYNSLIRGFCKEGKVDERMNLLN 462

Query: 88  FKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQ--------------- 132
               E + ++   SV  + +  L+   C++G      R+  DM                 
Sbjct: 463 ----ELVAQDPQPSV--SLYELLIIKSCKDGDFEAAKRLLGDMSSKGLHPNAYTYDTMLH 516

Query: 133 ---------------GKSVNEEFA-----CGHMIDSLCRSGRNHGASRVVYVMRKRGLTP 172
                           ++ N+ +      C  +I  LC  G++  AS +   M + G+  
Sbjct: 517 GSLKSGDFEHVRELYNETCNKGYGTTTATCNKIISELCSRGKSDEASEMFKKMSETGIKA 576

Query: 173 SLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVL 232
             ++YNS++ G CK G   ++  LL E +  G  PS  +Y  L+  LC   D E A+++ 
Sbjct: 577 DAITYNSLIRGFCKEGKVGKSMNLLNELVAQGLQPSASSYASLIIQLCQNGDAESAKRLW 636

Query: 233 QFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQP 277
             M+SK       +    +  LC     TE ++ L+ ML+ + +P
Sbjct: 637 GDMVSKGIEPHANLREHLISGLCKQGRATEGMDRLMGMLENKIKP 681



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 55/250 (22%), Positives = 101/250 (40%), Gaps = 38/250 (15%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C   +V E   L  ++ ++   P+V  Y  LI   C+ G+ + A ++  +M   G+ PN
Sbjct: 448 FCKEGKVDERMNLLNELVAQDPQPSVSLYELLIIKSCKDGDFEAAKRLLGDMSSKGLHPN 507

Query: 64  SLTYSVLVRGVLRTRDVERA-------------------NVLMFKLWERMKEEE------ 98
           + TY  ++ G L++ D E                     N ++ +L  R K +E      
Sbjct: 508 AYTYDTMLHGSLKSGDFEHVRELYNETCNKGYGTTTATCNKIISELCSRGKSDEASEMFK 567

Query: 99  -----DLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSG 153
                 +  +   + +L+   C+EG V +   +  ++          +   +I  LC++G
Sbjct: 568 KMSETGIKADAITYNSLIRGFCKEGKVGKSMNLLNELVAQGLQPSASSYASLIIQLCQNG 627

Query: 154 RNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG----GCMRAYQLLEEGIQFGYLPSE 209
               A R+   M  +G+ P       ++ GLCK G    G  R   +LE  I+    P +
Sbjct: 628 DAESAKRLWGDMVSKGIEPHANLREHLISGLCKQGRATEGMDRLMGMLENKIK----PKK 683

Query: 210 HTYKVLVEGL 219
             ++ L E L
Sbjct: 684 AAFEDLAECL 693


>gi|242039913|ref|XP_002467351.1| hypothetical protein SORBIDRAFT_01g026260 [Sorghum bicolor]
 gi|241921205|gb|EER94349.1| hypothetical protein SORBIDRAFT_01g026260 [Sorghum bicolor]
          Length = 846

 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 137/494 (27%), Positives = 221/494 (44%), Gaps = 20/494 (4%)

Query: 9   RVGEAH---KLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSL 65
           R GE H    +F +M +RG  P++ ++  +I G+C  G + VA  +   M   G++PN  
Sbjct: 196 RSGEVHAAWNVFEEMAARGPRPSLATFNAMILGFCHRGLVRVASGLLGIMGEFGIVPNVC 255

Query: 66  TYSVLVRG---VLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           +Y++L++G      +RD        FKL+E M            +  LVD LC EG + E
Sbjct: 256 SYNILIKGHCVFGWSRDA-------FKLFEEM-HRSGCEPTVVTYNILVDVLCHEGRMPE 307

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
             R+ ++M Q            +ID   ++GR   A      M+ RGL P   ++N I  
Sbjct: 308 ARRLFDEMAQVGIQANTITFNVLIDGYAKTGRMDQACAAYREMKARGLVPDSCTFNIIAA 367

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           G  K G    A QL+ +   FG         +LV  LC +  L+ A ++L+  + +    
Sbjct: 368 GAYKFG---HAAQLVHDHDMFGSHMLADGMDMLVCRLCWDCRLDDAWELLRGAIEQGAPL 424

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
                N  + A        E   +   M +    P   T N +I G C  GR++EA  +L
Sbjct: 425 SVTGFNALIAAYSKEGLHEEAFELYRIMNKLGLAPSSSTFNYLIMGLCNQGRLDEAQLLL 484

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
             MV+  +C   + +FT  +      G    AL   +  M + G  P  + ++A + GL 
Sbjct: 485 EHMVSKGYCL--STSFTICLDASFREGNAVCALKC-WDDMGKLGLQPDFIAFSAYINGLC 541

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
           RL  V EA + F  M   G+V ++ TY  +I  LC +  + EA +   ++     + D Y
Sbjct: 542 RLDYVNEAYQAFAEMTARGIVPNNFTYNSIISALCRAGNMTEALKLQQNMRQNGLVPDIY 601

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
               +I GLCR GK+    + L ++  +G+TP+ V YN +I+  C+      A   + +M
Sbjct: 602 TSNILIDGLCREGKLEMVDNLLLDMCSNGLTPDTVTYNTIINAYCRAKDMNSAMNFMNKM 661

Query: 483 RKNGLNPDAVTWRI 496
              G  PD  T+ I
Sbjct: 662 LAAGCEPDIFTYNI 675



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 133/539 (24%), Positives = 219/539 (40%), Gaps = 94/539 (17%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   R+ EA +LF +M   G   N +++  LI GY +TG MD A   + EM+  G+
Sbjct: 296 VDVLCHEGRMPEARRLFDEMAQVGIQANTITFNVLIDGYAKTGRMDQACAAYREMKARGL 355

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSL------ 114
           +P+S T++++  G  +           F    ++  + D+   +   A+ +D L      
Sbjct: 356 VPDSCTFNIIAAGAYK-----------FGHAAQLVHDHDM-FGSHMLADGMDMLVCRLCW 403

Query: 115 -CREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPS 173
            CR     E+ R A +     SV    A   +I +  + G +  A  +  +M K GL PS
Sbjct: 404 DCRLDDAWELLRGAIEQGAPLSVTGFNA---LIAAYSKEGLHEEAFELYRIMNKLGLAPS 460

Query: 174 LVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL--------------------------- 206
             ++N ++ GLC  G    A  LLE  +  GY                            
Sbjct: 461 SSTFNYLIMGLCNQGRLDEAQLLLEHMVSKGYCLSTSFTICLDASFREGNAVCALKCWDD 520

Query: 207 -------PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
                  P    +   + GLC    + +A +    M ++  V      N  + ALC   N
Sbjct: 521 MGKLGLQPDFIAFSAYINGLCRLDYVNEAYQAFAEMTARGIVPNNFTYNSIISALCRAGN 580

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
            TE L +   M Q    PD+ T N +I+G C+ G++E    +L DM +     PD VT+ 
Sbjct: 581 MTEALKLQQNMRQNGLVPDIYTSNILIDGLCREGKLEMVDNLLLDMCSNGL-TPDTVTYN 639

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
           TII        +  A+N + +++   G  P I TYN  +  L     + +A +V + ++ 
Sbjct: 640 TIINAYCRAKDMNSAMNFMNKMLAA-GCEPDIFTYNIWMHSLCSNHMLNQAGKVLDELVA 698

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
           +G   DS TY  ++DG+C S+ LD A                         +  +G+   
Sbjct: 699 MGCPPDSVTYNTLMDGIC-SDVLDRA-------------------------MILTGR--- 729

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILD 498
                  L+     PN +  NV +   CK    + A     ++R++    D  T  I+D
Sbjct: 730 -------LIKMAFQPNTITLNVFLSHFCKQGFGKRALMWAEKLREDSFVFDDATRNIID 781



 Score =  137 bits (346), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 111/413 (26%), Positives = 168/413 (40%), Gaps = 68/413 (16%)

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
           RSG  H A  V   M  RG  PSL ++N+++ G C  G    A  LL    +FG +P+  
Sbjct: 196 RSGEVHAAWNVFEEMAARGPRPSLATFNAMILGFCHRGLVRVASGLLGIMGEFGIVPNVC 255

Query: 211 TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM 270
           +Y +L++G C       A K+ + M            NI +  LC      E   +   M
Sbjct: 256 SYNILIKGHCVFGWSRDAFKLFEEMHRSGCEPTVVTYNILVDVLCHEGRMPEARRLFDEM 315

Query: 271 LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG- 329
            Q   Q + IT N +I+G+ K GR+++A     +M A +   PD+ TF  I  G    G 
Sbjct: 316 AQVGIQANTITFNVLIDGYAKTGRMDQACAAYREMKA-RGLVPDSCTFNIIAAGAYKFGH 374

Query: 330 -------------------------------RIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
                                          R+ +A  LL   + Q G    +  +NA++
Sbjct: 375 AAQLVHDHDMFGSHMLADGMDMLVCRLCWDCRLDDAWELLRGAIEQ-GAPLSVTGFNALI 433

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK------------ 406
               +    EEA E++  M  +G+   S+T+  +I GLC   +LDEA+            
Sbjct: 434 AAYSKEGLHEEAFELYRIMNKLGLAPSSSTFNYLIMGLCNQGRLDEAQLLLEHMVSKGYC 493

Query: 407 ----------------------RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFL 444
                                 + WDD+       D   ++A I GLCR   ++EA    
Sbjct: 494 LSTSFTICLDASFREGNAVCALKCWDDMGKLGLQPDFIAFSAYINGLCRLDYVNEAYQAF 553

Query: 445 YELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            E+   G+ PN   YN +I   C+     EA ++ + MR+NGL PD  T  IL
Sbjct: 554 AEMTARGIVPNNFTYNSIISALCRAGNMTEALKLQQNMRQNGLVPDIYTSNIL 606


>gi|255565812|ref|XP_002523895.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536825|gb|EEF38464.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 784

 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 131/520 (25%), Positives = 247/520 (47%), Gaps = 36/520 (6%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   ++ EA  L  DMK+ G +PN  ++  L+ GYC+ G +  A +V D M    V
Sbjct: 254 LDVLCKKGKLNEARDLLLDMKNNGLLPNRNTFNILVSGYCKLGWLKEAAQVIDLMAQNNV 313

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           LP+  TY++L+ G+ +   ++ A    F+L + M E   L  +   +  L++        
Sbjct: 314 LPDVWTYNMLIGGLCKDGKIDEA----FRLKDEM-ENLKLLPDVVTYNTLINGCFDCSSS 368

Query: 121 NEVFRIAEDMPQGKSVNEEFACGH-MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
            + F + + M +GK V       + ++    + G+   A   +  M + G +P  V++N+
Sbjct: 369 LKGFELIDKM-EGKGVKPNAVTYNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNT 427

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           +++G CK G    A+++++E  + G   +  T   ++  LCGE  L+ A K+L    SK+
Sbjct: 428 LINGYCKAGRLSEAFRMMDEMSRKGLKMNSVTLNTILHTLCGERKLDDAYKLLS-SASKR 486

Query: 240 D--VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
              VD      + +      K+  E + +   M + +  P +IT NT+I G C  G+ ++
Sbjct: 487 GYFVDEVSYGTLIMGYFKDGKS-VEAMKLWDEMKEKEIIPSIITYNTMIGGLCHSGKTDQ 545

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           ++  LN+++      PD  T+ TII G    G++++A    +  M ++ + P + T N +
Sbjct: 546 SIDKLNELLESGL-VPDETTYNTIILGYCREGQVEKAFQ-FHNKMVKKSFKPDLFTCNIL 603

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 417
           LRGL     +++A ++FN  +  G   D+ TY  +I GLC+ ++ +EA     ++     
Sbjct: 604 LRGLCTEGMLDKALKLFNTWISKGKAIDAVTYNTIISGLCKEDRFEEAFDLLAEMEEKKL 663

Query: 418 IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG-----------------------VTP 454
             D Y Y A++  L  +G++ EA  F+  +V+ G                         P
Sbjct: 664 GPDCYTYNAILSALADAGRMKEAEEFMSRIVEQGKLQDQTISLNKRKIESSSETSQESDP 723

Query: 455 NIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
           N V ++  I+  C     ++A  +++E  + G+     T+
Sbjct: 724 NSVTFSEQINELCTQGKYKDAMHMVQESTQKGITLHKSTY 763



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 135/529 (25%), Positives = 239/529 (45%), Gaps = 47/529 (8%)

Query: 8   SRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAY---KVFDEMRHCGVLPNS 64
           +R   A ++F  MK     PN+++  TLI+   R       Y    +F ++   GV  N+
Sbjct: 153 NRPHHAAQIFNRMKRLHLKPNLLTCNTLINALVRYPSKPSVYLSKAIFSDVIKLGVKVNT 212

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSV--NNAAFANLVDSLCREGYVNE 122
            T+++L+ G      +  A  L+ K+       +D S   +N ++  ++D LC++G +NE
Sbjct: 213 NTFNILIYGCCIENKLSEAIGLIGKM-------KDFSCFPDNVSYNTILDVLCKKGKLNE 265

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
              +  DM     +        ++   C+ G    A++V+ +M +  + P + +YN ++ 
Sbjct: 266 ARDLLLDMKNNGLLPNRNTFNILVSGYCKLGWLKEAAQVIDLMAQNNVLPDVWTYNMLIG 325

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           GLCK G    A++L +E      LP   TY  L+ G    S   K  +++  M  K    
Sbjct: 326 GLCKDGKIDEAFRLKDEMENLKLLPDVVTYNTLINGCFDCSSSLKGFELIDKMEGKGVKP 385

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
                N+ ++            N L  M ++   PD +T NT+ING+CK GR+ EA +++
Sbjct: 386 NAVTYNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNTLINGYCKAGRLSEAFRMM 445

Query: 303 NDM--------------VAGKFCAP--------------------DAVTFTTIIFGLLNV 328
           ++M              +    C                      D V++ T+I G    
Sbjct: 446 DEMSRKGLKMNSVTLNTILHTLCGERKLDDAYKLLSSASKRGYFVDEVSYGTLIMGYFKD 505

Query: 329 GRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTT 388
           G+  EA+ L +  M ++   P I+TYN ++ GL    + +++ +  N +L  G+V D TT
Sbjct: 506 GKSVEAMKL-WDEMKEKEIIPSIITYNTMIGGLCHSGKTDQSIDKLNELLESGLVPDETT 564

Query: 389 YAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELV 448
           Y  +I G C   Q+++A +F + +V  S   D +    +++GLC  G + +A+      +
Sbjct: 565 YNTIILGYCREGQVEKAFQFHNKMVKKSFKPDLFTCNILLRGLCTEGMLDKALKLFNTWI 624

Query: 449 DSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
             G   + V YN +I G CK     EA+ +L EM +  L PD  T+  +
Sbjct: 625 SKGKAIDAVTYNTIISGLCKEDRFEEAFDLLAEMEEKKLGPDCYTYNAI 673



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 91/369 (24%), Positives = 175/369 (47%), Gaps = 28/369 (7%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M+  G  P+ V++ TLI+GYC+ G +  A+++ DEM   G+  NS+T + ++  +   R 
Sbjct: 413 MEESGFSPDCVTFNTLINGYCKAGRLSEAFRMMDEMSRKGLKMNSVTLNTILHTLCGERK 472

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
           ++ A  L+    +R        V+  ++  L+    ++G   E  ++ ++M + + +   
Sbjct: 473 LDDAYKLLSSASKR-----GYFVDEVSYGTLIMGYFKDGKSVEAMKLWDEMKEKEIIPSI 527

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
                MI  LC SG+   +   +  + + GL P   +YN+I+ G C+ G   +A+Q   +
Sbjct: 528 ITYNTMIGGLCHSGKTDQSIDKLNELLESGLVPDETTYNTIILGYCREGQVEKAFQFHNK 587

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
            ++  + P   T  +L+ GLC E  L+KA K+    +SK         N  +  LC    
Sbjct: 588 MVKKSFKPDLFTCNILLRGLCTEGMLDKALKLFNTWISKGKAIDAVTYNTIISGLCKEDR 647

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV-AGKF-------- 310
             E  ++L  M + +  PD  T N +++     GR++EA + ++ +V  GK         
Sbjct: 648 FEEAFDLLAEMEEKKLGPDCYTYNAILSALADAGRMKEAEEFMSRIVEQGKLQDQTISLN 707

Query: 311 -------------CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
                          P++VTF+  I  L   G+ ++A++++ Q   Q+G +    TY ++
Sbjct: 708 KRKIESSSETSQESDPNSVTFSEQINELCTQGKYKDAMHMV-QESTQKGITLHKSTYISL 766

Query: 358 LRGLFRLRR 366
           + GL + R+
Sbjct: 767 MEGLIKRRK 775



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 121/248 (48%), Gaps = 3/248 (1%)

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL--KVLNDMVAGKFCAPDAVT 317
           P     +   M +   +P+++T NT+IN   +          K +   V       +  T
Sbjct: 155 PHHAAQIFNRMKRLHLKPNLLTCNTLINALVRYPSKPSVYLSKAIFSDVIKLGVKVNTNT 214

Query: 318 FTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCM 377
           F  +I+G     ++ EA+ L+ + M      P  V+YN +L  L +  ++ EA+++   M
Sbjct: 215 FNILIYGCCIENKLSEAIGLIGK-MKDFSCFPDNVSYNTILDVLCKKGKLNEARDLLLDM 273

Query: 378 LGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKI 437
              G++ +  T+ I++ G C+   L EA +  D +   + + D + Y  +I GLC+ GKI
Sbjct: 274 KNNGLLPNRNTFNILVSGYCKLGWLKEAAQVIDLMAQNNVLPDVWTYNMLIGGLCKDGKI 333

Query: 438 HEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            EA     E+ +  + P++V YN +I+G    S   + ++++ +M   G+ P+AVT+ ++
Sbjct: 334 DEAFRLKDEMENLKLLPDVVTYNTLINGCFDCSSSLKGFELIDKMEGKGVKPNAVTYNVV 393

Query: 498 DKLHGNRG 505
            K +   G
Sbjct: 394 VKWYVKEG 401


>gi|449453449|ref|XP_004144470.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g13630-like [Cucumis sativus]
          Length = 830

 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 138/547 (25%), Positives = 245/547 (44%), Gaps = 47/547 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M + C +  +  A   F  M   G + +  SY  L+HG C  G MD A    D+M   GV
Sbjct: 278 MSKFCKVGLIDVARSFFCLMVKNGLLHDSFSYNILLHGLCVAGSMDEALGFTDDMEKHGV 337

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TY+ L +G L    +  A  ++ K+       + L+ +   +  L+   C+ G +
Sbjct: 338 EPDVVTYNTLAKGFLLLGLMSGARKVVQKMLL-----QGLNPDLVTYTTLICGHCQMGNI 392

Query: 121 NEVFRI-AEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
            E  ++  E + +G  +N  F    ++  LC+ GR   A  +   M    L P  + Y+ 
Sbjct: 393 EEALKLRQETLSRGFKLNVIFY-NMLLSCLCKVGRIEEALTLFDEMETLRLEPDFIVYSI 451

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++HGLCK G   RAYQL E+       P     + ++ GL    ++ +AR          
Sbjct: 452 LIHGLCKEGFVQRAYQLYEQMRLKRKFPHHFAQRAVLLGLFKNGNISEARNYFDTWTRMD 511

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
            ++   + NI +     +    E + +   M++    P V+T NT+INGFC+ G + EA 
Sbjct: 512 LMEDVVLYNIMIDGYVRLDGIAEAMQLYYKMIERGITPSVVTFNTLINGFCRRGDLMEAR 571

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           K+L +++  K   P  VT+TT++     VG +QE  + L++ M      P  VTY  +++
Sbjct: 572 KML-EVIRLKGLVPSVVTYTTLMNAYCEVGNMQEMFHFLHE-MEANAVVPTHVTYTVLIK 629

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVW----P 415
           GL R  ++ E+ ++   M   G++ DS TY  +I   C+  ++ +A + ++ ++     P
Sbjct: 630 GLCRQNKMHESLQLLEYMYAKGLLPDSVTYNTIIQCFCKGKEITKALQLYNMMLLHNCDP 689

Query: 416 S-------------------------NIHDNYV------YAAMIKGLCRSGKIHEAVHFL 444
           +                         +I D  +      Y  +IK  C  G++ +A+ + 
Sbjct: 690 TQVTYKVLINALCIFGDLKDVDRMVVSIEDRNITLKKVTYMTIIKAHCAKGQVSKALGYF 749

Query: 445 YELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA-VTWRILDKLH-- 501
            +++  G   +I  Y+ VI+  CK  +  EA      M   G+ PD  +   +L+  H  
Sbjct: 750 NQMLAKGFVISIRDYSAVINRLCKRGLITEAKYFFVMMLSEGVTPDPEICKTVLNAFHQQ 809

Query: 502 GNRGNDF 508
           GN  + F
Sbjct: 810 GNNSSVF 816



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 125/475 (26%), Positives = 219/475 (46%), Gaps = 7/475 (1%)

Query: 13  AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVR 72
           A K+   M  +G  P++V+YTTLI G+C+ G ++ A K+  E    G   N + Y++L+ 
Sbjct: 360 ARKVVQKMLLQGLNPDLVTYTTLICGHCQMGNIEEALKLRQETLSRGFKLNVIFYNMLLS 419

Query: 73  GVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQ 132
            + +   +E A + +F   E ++ E D  V    ++ L+  LC+EG+V   +++ E M  
Sbjct: 420 CLCKVGRIEEA-LTLFDEMETLRLEPDFIV----YSILIHGLCKEGFVQRAYQLYEQMRL 474

Query: 133 GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMR 192
            +     FA   ++  L ++G    A        +  L   +V YN ++ G  +  G   
Sbjct: 475 KRKFPHHFAQRAVLLGLFKNGNISEARNYFDTWTRMDLMEDVVLYNIMIDGYVRLDGIAE 534

Query: 193 AYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLR 252
           A QL  + I+ G  PS  T+  L+ G C   DL +ARK+L+ +  K  V         + 
Sbjct: 535 AMQLYYKMIERGITPSVVTFNTLINGFCRRGDLMEARKMLEVIRLKGLVPSVVTYTTLMN 594

Query: 253 ALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCA 312
           A C + N  E+ + L  M      P  +T   +I G C+  ++ E+L++L  M A K   
Sbjct: 595 AYCEVGNMQEMFHFLHEMEANAVVPTHVTYTVLIKGLCRQNKMHESLQLLEYMYA-KGLL 653

Query: 313 PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKE 372
           PD+VT+ TII        I +AL L Y +M      P  VTY  ++  L     +++   
Sbjct: 654 PDSVTYNTIIQCFCKGKEITKALQL-YNMMLLHNCDPTQVTYKVLINALCIFGDLKDVDR 712

Query: 373 VFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLC 432
           +   +    +     TY  +I   C   Q+ +A  +++ ++    +     Y+A+I  LC
Sbjct: 713 MVVSIEDRNITLKKVTYMTIIKAHCAKGQVSKALGYFNQMLAKGFVISIRDYSAVINRLC 772

Query: 433 RSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
           + G I EA +F   ++  GVTP+      V++   +       ++ L  + K+G 
Sbjct: 773 KRGLITEAKYFFVMMLSEGVTPDPEICKTVLNAFHQQGNNSSVFEFLAMVVKSGF 827



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 122/447 (27%), Positives = 212/447 (47%), Gaps = 7/447 (1%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C +  + EA KL  +  SRG   NV+ Y  L+   C+ G ++ A  +FDEM    + P+ 
Sbjct: 387 CQMGNIEEALKLRQETLSRGFKLNVIFYNMLLSCLCKVGRIEEALTLFDEMETLRLEPDF 446

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           + YS+L+ G+ +   V+RA    ++L+E+M+ +     + A  A L+  L + G ++E  
Sbjct: 447 IVYSILIHGLCKEGFVQRA----YQLYEQMRLKRKFPHHFAQRAVLL-GLFKNGNISEAR 501

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
              +   +   + +      MID   R      A ++ Y M +RG+TPS+V++N++++G 
Sbjct: 502 NYFDTWTRMDLMEDVVLYNIMIDGYVRLDGIAEAMQLYYKMIERGITPSVVTFNTLINGF 561

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
           C+ G  M A ++LE     G +PS  TY  L+   C   ++++    L  M +   V   
Sbjct: 562 CRRGDLMEARKMLEVIRLKGLVPSVVTYTTLMNAYCEVGNMQEMFHFLHEMEANAVVPTH 621

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
               + ++ LC      E L +L +M      PD +T NT+I  FCK   I +AL++ N 
Sbjct: 622 VTYTVLIKGLCRQNKMHESLQLLEYMYAKGLLPDSVTYNTIIQCFCKGKEITKALQLYNM 681

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
           M+    C P  VT+  +I  L   G +++   ++  +   R  +   VTY  +++     
Sbjct: 682 MLLHN-CDPTQVTYKVLINALCIFGDLKDVDRMVVSI-EDRNITLKKVTYMTIIKAHCAK 739

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY 424
            +V +A   FN ML  G V     Y+ VI+ LC+   + EAK F+  ++      D  + 
Sbjct: 740 GQVSKALGYFNQMLAKGFVISIRDYSAVINRLCKRGLITEAKYFFVMMLSEGVTPDPEIC 799

Query: 425 AAMIKGLCRSGKIHEAVHFLYELVDSG 451
             ++    + G       FL  +V SG
Sbjct: 800 KTVLNAFHQQGNNSSVFEFLAMVVKSG 826



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 124/513 (24%), Positives = 225/513 (43%), Gaps = 46/513 (8%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           MK      +V +Y +L+H    T   D+ + V++E++  G   +  T S+L+ G+     
Sbjct: 196 MKDLNFQASVPTYNSLLHNMRHT---DIMWDVYNEIKVSGAPQSECTTSILIHGLCEQSK 252

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
           +E A +       ++     +S+N      ++   C+ G ++        M +   +++ 
Sbjct: 253 LEDA-ISFLHDSNKVVGPSIVSINT-----IMSKFCKVGLIDVARSFFCLMVKNGLLHDS 306

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
           F+   ++  LC +G    A      M K G+ P +V+YN++  G    G    A +++++
Sbjct: 307 FSYNILLHGLCVAGSMDEALGFTDDMEKHGVEPDVVTYNTLAKGFLLLGLMSGARKVVQK 366

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
            +  G  P   TY  L+ G C   ++E+A K+ Q  LS+         N+ L  LC +  
Sbjct: 367 MLLQGLNPDLVTYTTLICGHCQMGNIEEALKLRQETLSRGFKLNVIFYNMLLSCLCKVGR 426

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM-VAGKFCAPDAVTF 318
             E L +   M   + +PD I  + +I+G CK G ++ A ++   M +  KF  P     
Sbjct: 427 IEEALTLFDEMETLRLEPDFIVYSILIHGLCKEGFVQRAYQLYEQMRLKRKF--PHHFAQ 484

Query: 319 TTIIFGLLNVGRIQEALNL----------------------------------LYQVMPQ 344
             ++ GL   G I EA N                                   LY  M +
Sbjct: 485 RAVLLGLFKNGNISEARNYFDTWTRMDLMEDVVLYNIMIDGYVRLDGIAEAMQLYYKMIE 544

Query: 345 RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 404
           RG +P +VT+N ++ G  R   + EA+++   +   G+V    TY  +++  CE   + E
Sbjct: 545 RGITPSVVTFNTLINGFCRRGDLMEARKMLEVIRLKGLVPSVVTYTTLMNAYCEVGNMQE 604

Query: 405 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
              F  ++   + +  +  Y  +IKGLCR  K+HE++  L  +   G+ P+ V YN +I 
Sbjct: 605 MFHFLHEMEANAVVPTHVTYTVLIKGLCRQNKMHESLQLLEYMYAKGLLPDSVTYNTIIQ 664

Query: 465 GACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
             CK     +A Q+   M  +  +P  VT+++L
Sbjct: 665 CFCKGKEITKALQLYNMMLLHNCDPTQVTYKVL 697



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 118/420 (28%), Positives = 188/420 (44%), Gaps = 74/420 (17%)

Query: 156 HGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVL 215
           H A  V+  M+      S+ +YNS++H + +H   M  + +  E    G   SE T  +L
Sbjct: 187 HDALFVIAKMKDLNFQASVPTYNSLLHNM-RHTDIM--WDVYNEIKVSGAPQSECTTSIL 243

Query: 216 VEGLCGESDLEKARKVLQ--------------FMLSK------KDVDRTRIC-------- 247
           + GLC +S LE A   L                ++SK       DV R+  C        
Sbjct: 244 IHGLCEQSKLEDAISFLHDSNKVVGPSIVSINTIMSKFCKVGLIDVARSFFCLMVKNGLL 303

Query: 248 ------NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
                 NI L  LC+  +  E L     M +   +PDV+T NT+  GF  +G +  A KV
Sbjct: 304 HDSFSYNILLHGLCVAGSMDEALGFTDDMEKHGVEPDVVTYNTLAKGFLLLGLMSGARKV 363

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
           +  M+      PD VT+TT+I G   +G I+EAL L  + +  RG+   ++ YN +L  L
Sbjct: 364 VQKMLLQGL-NPDLVTYTTLICGHCQMGNIEEALKLRQETL-SRGFKLNVIFYNMLLSCL 421

Query: 362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE----------------------- 398
            ++ R+EEA  +F+ M  + +  D   Y+I+I GLC+                       
Sbjct: 422 CKVGRIEEALTLFDEMETLRLEPDFIVYSILIHGLCKEGFVQRAYQLYEQMRLKRKFPHH 481

Query: 399 ------------SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE 446
                       +  + EA+ ++D       + D  +Y  MI G  R   I EA+   Y+
Sbjct: 482 FAQRAVLLGLFKNGNISEARNYFDTWTRMDLMEDVVLYNIMIDGYVRLDGIAEAMQLYYK 541

Query: 447 LVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           +++ G+TP++V +N +I+G C+     EA ++L  +R  GL P  VT+  L   +   GN
Sbjct: 542 MIERGITPSVVTFNTLINGFCRRGDLMEARKMLEVIRLKGLVPSVVTYTTLMNAYCEVGN 601



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 84/347 (24%), Positives = 134/347 (38%), Gaps = 75/347 (21%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D    L  + EA +L++ M  RG  P+VV++ TLI+G+CR G++  A K+ + +R  G+
Sbjct: 523 IDGYVRLDGIAEAMQLYYKMIERGITPSVVTFNTLINGFCRRGDLMEARKMLEVIRLKGL 582

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P+ +TY+                                         L+++ C  G +
Sbjct: 583 VPSVVTYT----------------------------------------TLMNAYCEVGNM 602

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E+F    +M     V        +I  LCR  + H + +++  M  +GL P  V+YN+I
Sbjct: 603 QEMFHFLHEMEANAVVPTHVTYTVLIKGLCRQNKMHESLQLLEYMYAKGLLPDSVTYNTI 662

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLE-------------- 226
           +   CK     +A QL    +     P++ TYKVL+  LC   DL+              
Sbjct: 663 IQCFCKGKEITKALQLYNMMLLHNCDPTQVTYKVLINALCIFGDLKDVDRMVVSIEDRNI 722

Query: 227 ---------------------KARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 265
                                KA      ML+K  V   R  +  +  LC     TE   
Sbjct: 723 TLKKVTYMTIIKAHCAKGQVSKALGYFNQMLAKGFVISIRDYSAVINRLCKRGLITEAKY 782

Query: 266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCA 312
             V ML     PD     TV+N F + G      + L  +V   F +
Sbjct: 783 FFVMMLSEGVTPDPEICKTVLNAFHQQGNNSSVFEFLAMVVKSGFIS 829


>gi|255573471|ref|XP_002527661.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532966|gb|EEF34732.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 766

 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 125/487 (25%), Positives = 232/487 (47%), Gaps = 12/487 (2%)

Query: 16  LFFDMKSRGHVPNVVSYTTLIHGYCRTG---EMDV--AYKVFDEMRHCGVLPNSLTYSVL 70
           LF ++K  G  PNV +YT +++ YC+      +D+  A +V +EM   G  P  +TY   
Sbjct: 235 LFEELKDSGPSPNVFTYTIMMNYYCKGSFGKNIDIVKATEVLEEMEMNGESPTVVTYGAY 294

Query: 71  VRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDM 130
           + G+ R   VE A  L+  L  R++ +    +N+  +  ++   CR G ++E F + EDM
Sbjct: 295 IHGLCRAGCVEFALRLIRDL--RIRNQ---PLNSYCYNAVIHEFCRNGELHEAFELLEDM 349

Query: 131 PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGC 190
                    ++   +ID LC+ G+   A  ++  M +  + PSLV+Y+S+  GLCK G  
Sbjct: 350 RSHGISPTAYSYSILIDGLCKKGQVEKALDLIEEMVQSNVKPSLVTYSSLFDGLCKSGLT 409

Query: 191 MRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIY 250
             +  +       GY     +Y  L+ G   + D+  A K++  M     V  +   N  
Sbjct: 410 EISLSMFHNLGAEGYKHDVISYNTLINGFVLQRDMGSACKLVHEMRMNGSVPNSFTFNRL 469

Query: 251 LRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKF 310
           +   C  +   + L V   ML+   Q ++ T N + + F + G   EALK++N+ V    
Sbjct: 470 IHGFCKRQRLDKALEVFTIMLKVGVQLNIFTCNIMADEFNREGHFWEALKLINE-VQDLG 528

Query: 311 CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEA 370
             P++ T+  +I  L    + ++A  +L  VM +    P  + YN ++ G  +     +A
Sbjct: 529 IVPNSYTYNIVIKWLCKEQKTEKAWEVL-PVMLKNNVFPCAIHYNTLIDGYAKQSNPTKA 587

Query: 371 KEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKG 430
             ++  ML +G+     TY ++I+     +++ EA   + +++    + D  ++  +I G
Sbjct: 588 LLLYAKMLKVGIPPSIVTYTMLINMFSNRSKMQEAYYLFKEMIKKGLVPDEIIFTCIIAG 647

Query: 431 LCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD 490
            C+ G +  A     E+   G +PN+V Y  +IDG  K+    +A  +  +M+++ + PD
Sbjct: 648 FCKVGDMKSAWALYEEMSQWGKSPNVVTYTCLIDGYFKIKRMDKADFLFNKMKRDNVTPD 707

Query: 491 AVTWRIL 497
            +T+  L
Sbjct: 708 GLTYTAL 714



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 120/445 (26%), Positives = 204/445 (45%), Gaps = 45/445 (10%)

Query: 6   GLSRVG---EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           GL R G    A +L  D++ R    N   Y  +IH +CR GE+  A+++ ++MR  G+ P
Sbjct: 297 GLCRAGCVEFALRLIRDLRIRNQPLNSYCYNAVIHEFCRNGELHEAFELLEDMRSHGISP 356

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCR------ 116
            + +YS+L+ G+ +   VE+A      L E M  + ++  +   +++L D LC+      
Sbjct: 357 TAYSYSILIDGLCKKGQVEKA----LDLIEEMV-QSNVKPSLVTYSSLFDGLCKSGLTEI 411

Query: 117 ----------EGYVNEVF-------------------RIAEDMPQGKSVNEEFACGHMID 147
                     EGY ++V                    ++  +M    SV   F    +I 
Sbjct: 412 SLSMFHNLGAEGYKHDVISYNTLINGFVLQRDMGSACKLVHEMRMNGSVPNSFTFNRLIH 471

Query: 148 SLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLP 207
             C+  R   A  V  +M K G+  ++ + N +     + G    A +L+ E    G +P
Sbjct: 472 GFCKRQRLDKALEVFTIMLKVGVQLNIFTCNIMADEFNREGHFWEALKLINEVQDLGIVP 531

Query: 208 SEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVL 267
           + +TY ++++ LC E   EKA +VL  ML           N  +       NPT+ L + 
Sbjct: 532 NSYTYNIVIKWLCKEQKTEKAWEVLPVMLKNNVFPCAIHYNTLIDGYAKQSNPTKALLLY 591

Query: 268 VFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLN 327
             ML+    P ++T   +IN F    +++EA  +  +M+  K   PD + FT II G   
Sbjct: 592 AKMLKVGIPPSIVTYTMLINMFSNRSKMQEAYYLFKEMIK-KGLVPDEIIFTCIIAGFCK 650

Query: 328 VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADST 387
           VG ++ A   LY+ M Q G SP +VTY  ++ G F+++R+++A  +FN M    V  D  
Sbjct: 651 VGDMKSAW-ALYEEMSQWGKSPNVVTYTCLIDGYFKIKRMDKADFLFNKMKRDNVTPDGL 709

Query: 388 TYAIVIDGLCESNQLDEAKRFWDDI 412
           TY  +I G       D  +  ++++
Sbjct: 710 TYTALIFGYQSLGYSDRVREMFNEM 734



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 112/494 (22%), Positives = 218/494 (44%), Gaps = 72/494 (14%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           +A  +F   +  G   N++S   L++ +    + +    +F+E++  G  PN  TY++++
Sbjct: 196 DAADVFVQARRFGLELNILSCNFLLNCFAEANQTEFIRSLFEELKDSGPSPNVFTYTIMM 255

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP 131
               +                             +F   +D       + +   + E+M 
Sbjct: 256 NYYCK----------------------------GSFGKNID-------IVKATEVLEEME 280

Query: 132 QGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCM 191
                      G  I  LCR+G    A R++  +R R    +   YN+++H  C++G   
Sbjct: 281 MNGESPTVVTYGAYIHGLCRAGCVEFALRLIRDLRIRNQPLNSYCYNAVIHEFCRNGELH 340

Query: 192 RAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYL 251
            A++LLE+    G  P+ ++Y +L++GLC +  +EKA                       
Sbjct: 341 EAFELLEDMRSHGISPTAYSYSILIDGLCKKGQVEKA----------------------- 377

Query: 252 RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC 311
                       L+++  M+Q+  +P ++T +++ +G CK G  E +L + +++ A  + 
Sbjct: 378 ------------LDLIEEMVQSNVKPSLVTYSSLFDGLCKSGLTEISLSMFHNLGAEGY- 424

Query: 312 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK 371
             D +++ T+I G +    +  A  L+++ M   G  P   T+N ++ G  + +R+++A 
Sbjct: 425 KHDVISYNTLINGFVLQRDMGSACKLVHE-MRMNGSVPNSFTFNRLIHGFCKRQRLDKAL 483

Query: 372 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 431
           EVF  ML +GV  +  T  I+ D         EA +  +++     + ++Y Y  +IK L
Sbjct: 484 EVFTIMLKVGVQLNIFTCNIMADEFNREGHFWEALKLINEVQDLGIVPNSYTYNIVIKWL 543

Query: 432 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 491
           C+  K  +A   L  ++ + V P  + YN +IDG  K S   +A  +  +M K G+ P  
Sbjct: 544 CKEQKTEKAWEVLPVMLKNNVFPCAIHYNTLIDGYAKQSNPTKALLLYAKMLKVGIPPSI 603

Query: 492 VTWRILDKLHGNRG 505
           VT+ +L  +  NR 
Sbjct: 604 VTYTMLINMFSNRS 617



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 100/395 (25%), Positives = 184/395 (46%), Gaps = 48/395 (12%)

Query: 1   MDQLC--GLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHC 58
            D LC  GL+ +  +  +F ++ + G+  +V+SY TLI+G+    +M  A K+  EMR  
Sbjct: 400 FDGLCKSGLTEISLS--MFHNLGAEGYKHDVISYNTLINGFVLQRDMGSACKLVHEMRMN 457

Query: 59  GVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREG 118
           G +PNS T++ L+ G  + + +++A + +F +  ++  + ++   N     + D   REG
Sbjct: 458 GSVPNSFTFNRLIHGFCKRQRLDKA-LEVFTIMLKVGVQLNIFTCNI----MADEFNREG 512

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
           +  E  ++  ++     V   +    +I  LC+  +   A  V+ VM K  + P  + YN
Sbjct: 513 HFWEALKLINEVQDLGIVPNSYTYNIVIKWLCKEQKTEKAWEVLPVMLKNNVFPCAIHYN 572

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
           +++ G  K     +A  L  + ++ G  PS  TY +L+      S +++A  + + M+ K
Sbjct: 573 TLIDGYAKQSNPTKALLLYAKMLKVGIPPSIVTYTMLINMFSNRSKMQEAYYLFKEMIKK 632

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
             V                                   PD I    +I GFCK+G ++ A
Sbjct: 633 GLV-----------------------------------PDEIIFTCIIAGFCKVGDMKSA 657

Query: 299 LKVLNDMVA-GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
             +  +M   GK  +P+ VT+T +I G   + R+ +A + L+  M +   +P  +TY A+
Sbjct: 658 WALYEEMSQWGK--SPNVVTYTCLIDGYFKIKRMDKA-DFLFNKMKRDNVTPDGLTYTAL 714

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIV 392
           + G   L   +  +E+FN M   GV  + T YA +
Sbjct: 715 IFGYQSLGYSDRVREMFNEMKENGVFPNYTAYATL 749



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/371 (22%), Positives = 172/371 (46%), Gaps = 7/371 (1%)

Query: 141 ACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG-----GCMRAYQ 195
           +C  +++    + +      +   ++  G +P++ +Y  +++  CK         ++A +
Sbjct: 215 SCNFLLNCFAEANQTEFIRSLFEELKDSGPSPNVFTYTIMMNYYCKGSFGKNIDIVKATE 274

Query: 196 LLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALC 255
           +LEE    G  P+  TY   + GLC    +E A ++++ +  +     +   N  +   C
Sbjct: 275 VLEEMEMNGESPTVVTYGAYIHGLCRAGCVEFALRLIRDLRIRNQPLNSYCYNAVIHEFC 334

Query: 256 LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA 315
                 E   +L  M      P   + + +I+G CK G++E+AL ++ +MV      P  
Sbjct: 335 RNGELHEAFELLEDMRSHGISPTAYSYSILIDGLCKKGQVEKALDLIEEMVQSN-VKPSL 393

Query: 316 VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN 375
           VT++++  GL   G  + +L++ + +  + GY   +++YN ++ G    R +  A ++ +
Sbjct: 394 VTYSSLFDGLCKSGLTEISLSMFHNLGAE-GYKHDVISYNTLINGFVLQRDMGSACKLVH 452

Query: 376 CMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG 435
            M   G V +S T+  +I G C+  +LD+A   +  ++      + +    M     R G
Sbjct: 453 EMRMNGSVPNSFTFNRLIHGFCKRQRLDKALEVFTIMLKVGVQLNIFTCNIMADEFNREG 512

Query: 436 KIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWR 495
              EA+  + E+ D G+ PN   YN+VI   CK     +A+++L  M KN + P A+ + 
Sbjct: 513 HFWEALKLINEVQDLGIVPNSYTYNIVIKWLCKEQKTEKAWEVLPVMLKNNVFPCAIHYN 572

Query: 496 ILDKLHGNRGN 506
            L   +  + N
Sbjct: 573 TLIDGYAKQSN 583



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 151/353 (42%), Gaps = 29/353 (8%)

Query: 152 SGRNHGASRVVYVMRKRGLTPSLVS-YNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
           S R   A +     RKRGL P +++ + ++   L  H    +A          G+  S +
Sbjct: 69  SNRFEKARKPNSCPRKRGLFPFVLTVFKTLNWKLATHTNFFKAVSF------HGFSHSIY 122

Query: 211 TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM 270
            +K+++  L       + +  L+ ++S            Y + + L  + +EL + L+  
Sbjct: 123 AFKIIIHVLASAGLQMEVQIFLRDIIS------------YYKEVNL--DVSELFSTLLDS 168

Query: 271 LQ-TQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG 329
            Q       +I  N +I  F +   + +A  V   + A +F     +     +       
Sbjct: 169 PQDAHMGGSIIVANVLIKVFAENNMLVDAADVF--VQARRFGLELNILSCNFLLNCFAEA 226

Query: 330 RIQEALNLLYQVMPQRGYSPGIVTYNAVL----RGLF-RLRRVEEAKEVFNCMLGIGVVA 384
              E +  L++ +   G SP + TY  ++    +G F +   + +A EV   M   G   
Sbjct: 227 NQTEFIRSLFEELKDSGPSPNVFTYTIMMNYYCKGSFGKNIDIVKATEVLEEMEMNGESP 286

Query: 385 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFL 444
              TY   I GLC +  ++ A R   D+   +   ++Y Y A+I   CR+G++HEA   L
Sbjct: 287 TVVTYGAYIHGLCRAGCVEFALRLIRDLRIRNQPLNSYCYNAVIHEFCRNGELHEAFELL 346

Query: 445 YELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            ++   G++P    Y+++IDG CK     +A  ++ EM ++ + P  VT+  L
Sbjct: 347 EDMRSHGISPTAYSYSILIDGLCKKGQVEKALDLIEEMVQSNVKPSLVTYSSL 399


>gi|110741592|dbj|BAE98744.1| PPR-repeat protein [Arabidopsis thaliana]
          Length = 548

 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 125/487 (25%), Positives = 227/487 (46%), Gaps = 46/487 (9%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           ++ +A  LF DM      P++V +  L+    +  + DV   +  +M   G+  +  T++
Sbjct: 65  KLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFN 124

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
           +++        V  A  ++ K+ +   E + +++                          
Sbjct: 125 IVINCFCCCFQVSLALSILGKMLKLGYEPDRVTI-------------------------- 158

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
                         G +++  CR  R   A  +V  M + G  P +V+YN+I+  LCK  
Sbjct: 159 --------------GSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTK 204

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
               A+   +E  + G  P+  TY  LV GLC  S    A ++L  M+ KK        +
Sbjct: 205 RVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYS 264

Query: 249 IYLRALCLIKNPTELLNVLVF--MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV 306
             L A   +KN   L    +F  M++    PD++T ++++NG C   RI+EA ++  D++
Sbjct: 265 ALLDAF--VKNGKVLEAKELFEEMVRMSIDPDIVTYSSLVNGLCLHDRIDEANQMF-DLM 321

Query: 307 AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 366
             K C  D V++ T+I G     R+++ + L ++ M QRG     VTYN +++G F+   
Sbjct: 322 VSKGCLADVVSYNTLINGFCKAKRVEDGMKL-FREMSQRGLVSNTVTYNTLIQGFFQAGD 380

Query: 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAA 426
           V++A+E F+ M   G+  D  TY I++ GLC++ +L++A   ++D+       D   Y  
Sbjct: 381 VDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTT 440

Query: 427 MIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG 486
           +I+G+C++GK+ EA      L   G+ P+IV Y  ++ G C   +  E   +  +M++ G
Sbjct: 441 VIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEG 500

Query: 487 LNPDAVT 493
           L  +  T
Sbjct: 501 LMKNDCT 507



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 100/365 (27%), Positives = 171/365 (46%), Gaps = 49/365 (13%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   RV +A   F +++ +G  PNVV+YT L++G C +     A ++  +M    +
Sbjct: 197 IDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKI 256

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +TYS L+   ++   V  A  L F+   RM  + D+      +++LV+ LC    +
Sbjct: 257 TPNVITYSALLDAFVKNGKVLEAKEL-FEEMVRMSIDPDI----VTYSSLVNGLCLHDRI 311

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E  ++ + M     + +  +   +I+  C++ R     ++   M +RGL  + V+YN++
Sbjct: 312 DEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTL 371

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G  + G   +A +   +   FG  P   TY +L+ GLC   +LEKA  + + M  K++
Sbjct: 372 IQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDM-QKRE 430

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           +D                                   D++T  TVI G CK G++EEA  
Sbjct: 431 MDL----------------------------------DIVTYTTVIRGMCKTGKVEEAWS 456

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG-------YSPGIVT 353
           +   + + K   PD VT+TT++ GL   G + E +  LY  M Q G        S G +T
Sbjct: 457 LFCSL-SLKGLKPDIVTYTTMMSGLCTKGLLHE-VEALYTKMKQEGLMKNDCTLSDGDIT 514

Query: 354 YNAVL 358
            +A L
Sbjct: 515 LSAEL 519



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 88/388 (22%), Positives = 187/388 (48%), Gaps = 37/388 (9%)

Query: 107 FANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMR 166
           F  L+ ++ +    + V  + + M      N+ +    +I+  C   +   A  ++  M 
Sbjct: 88  FNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKML 147

Query: 167 KRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLE 226
           K G  P  V+  S+V+G C+      A  L+++ ++ GY P    Y  +++ LC      
Sbjct: 148 KLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLC------ 201

Query: 227 KARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVI 286
           K ++V       K+++R  I                             +P+V+T   ++
Sbjct: 202 KTKRVNDAFDFFKEIERKGI-----------------------------RPNVVTYTALV 232

Query: 287 NGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
           NG C   R  +A ++L+DM+  K   P+ +T++ ++   +  G++ EA  L ++ M +  
Sbjct: 233 NGLCNSSRWSDAARLLSDMIKKKI-TPNVITYSALLDAFVKNGKVLEAKEL-FEEMVRMS 290

Query: 347 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
             P IVTY++++ GL    R++EA ++F+ M+  G +AD  +Y  +I+G C++ ++++  
Sbjct: 291 IDPDIVTYSSLVNGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGM 350

Query: 407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466
           + + ++     + +   Y  +I+G  ++G + +A  F  ++   G++P+I  YN+++ G 
Sbjct: 351 KLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGL 410

Query: 467 CKLSMKREAYQILREMRKNGLNPDAVTW 494
           C      +A  I  +M+K  ++ D VT+
Sbjct: 411 CDNGELEKALVIFEDMQKREMDLDIVTY 438



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 94/387 (24%), Positives = 179/387 (46%), Gaps = 7/387 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C   +V  A  +   M   G+ P+ V+  +L++G+CR   +  A  + D+M   G  P+
Sbjct: 130 FCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPD 189

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            + Y+ ++  + +T+ V  A    F  ++ + E + +  N   +  LV+ LC     ++ 
Sbjct: 190 IVAYNAIIDSLCKTKRVNDA----FDFFKEI-ERKGIRPNVVTYTALVNGLCNSSRWSDA 244

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            R+  DM + K          ++D+  ++G+   A  +   M +  + P +V+Y+S+V+G
Sbjct: 245 ARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLVNG 304

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LC H     A Q+ +  +  G L    +Y  L+ G C    +E   K+ + M  +  V  
Sbjct: 305 LCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSN 364

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
           T   N  ++      +  +       M      PD+ T N ++ G C  G +E+AL +  
Sbjct: 365 TVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFE 424

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           DM   +    D VT+TT+I G+   G+++EA + L+  +  +G  P IVTY  ++ GL  
Sbjct: 425 DMQKREM-DLDIVTYTTVIRGMCKTGKVEEAWS-LFCSLSLKGLKPDIVTYTTMMSGLCT 482

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYA 390
              + E + ++  M   G++ +  T +
Sbjct: 483 KGLLHEVEALYTKMKQEGLMKNDCTLS 509



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 83/327 (25%), Positives = 164/327 (50%), Gaps = 4/327 (1%)

Query: 172 PSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKV 231
           PS+V +N ++  + K         L ++    G     +T+ +++   C    +  A  +
Sbjct: 83  PSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSI 142

Query: 232 LQFMLS-KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFC 290
           L  ML    + DR  I ++ +   C     ++ ++++  M++   +PD++  N +I+  C
Sbjct: 143 LGKMLKLGYEPDRVTIGSL-VNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLC 201

Query: 291 KMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG 350
           K  R+ +A     + +  K   P+ VT+T ++ GL N  R  +A  LL   M ++  +P 
Sbjct: 202 KTKRVNDAFDFFKE-IERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSD-MIKKKITPN 259

Query: 351 IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD 410
           ++TY+A+L    +  +V EAKE+F  M+ + +  D  TY+ +++GLC  +++DEA + +D
Sbjct: 260 VITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLVNGLCLHDRIDEANQMFD 319

Query: 411 DIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLS 470
            +V    + D   Y  +I G C++ ++ + +    E+   G+  N V YN +I G  +  
Sbjct: 320 LMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAG 379

Query: 471 MKREAYQILREMRKNGLNPDAVTWRIL 497
              +A +   +M   G++PD  T+ IL
Sbjct: 380 DVDKAQEFFSQMDFFGISPDIWTYNIL 406



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 118/234 (50%), Gaps = 13/234 (5%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R+ EA+++F  M S+G + +VVSY TLI+G+C+   ++   K+F EM   G++ N
Sbjct: 305 LCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSN 364

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           ++TY+ L++G  +  DV++A    F   +      D+   N     L+  LC  G + + 
Sbjct: 365 TVTYNTLIQGFFQAGDVDKAQEF-FSQMDFFGISPDIWTYNI----LLGGLCDNGELEKA 419

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             I EDM + +   +      +I  +C++G+   A  +   +  +GL P +V+Y +++ G
Sbjct: 420 LVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSG 479

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
           LC  G       L  +  Q G + ++ T          + D+  + ++++ MLS
Sbjct: 480 LCTKGLLHEVEALYTKMKQEGLMKNDCTL--------SDGDITLSAELIKKMLS 525


>gi|224123236|ref|XP_002330266.1| predicted protein [Populus trichocarpa]
 gi|222871301|gb|EEF08432.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 124/478 (25%), Positives = 232/478 (48%), Gaps = 7/478 (1%)

Query: 26  VPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANV 85
           +   V Y  LI   C     D A++ FD M+  GV+P+    + ++   L++   E+A V
Sbjct: 118 IKTYVLYDLLIRACCELKRGDDAFECFDMMKGKGVIPHVHACNDMLSLFLKSNRTEKAWV 177

Query: 86  LMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHM 145
           L  +++ RM+ +  +      F  +++ LC+EG + +       M              +
Sbjct: 178 LYAEMF-RMRIKSSV----VTFNIMINVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNTI 232

Query: 146 IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY 205
           I   C  GR  GA  +  +M+ RG+ P   +Y S + G+CK G    A  +LE+  + G 
Sbjct: 233 IHGYCSRGRVEGARMIFDLMKCRGVKPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIGL 292

Query: 206 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 265
            P+  TY  L++G C + +LE A      M+ +  +      N+ + AL L     E   
Sbjct: 293 RPTAVTYNTLIDGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALFLDCKMDEADG 352

Query: 266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 325
           ++  M +    PD +T N +ING+C+ G +++A  + ++M++ K   P  VT+T++I+ L
Sbjct: 353 IIKEMSEKGLVPDSVTYNILINGYCRCGNVKKAFTLHDEMIS-KGIQPTRVTYTSLIYVL 411

Query: 326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 385
              GR+++A +L  +++ ++G  P ++ +NA++ G      ++ A  +   M  + VV D
Sbjct: 412 SKRGRMKQADDLFEKIV-RKGIFPDLIMFNALIDGHCANGNMDRAFAMLKEMDQMKVVPD 470

Query: 386 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY 445
             T+  ++ G C   +++ A+   +++       D+  Y  +I G  + G + +A     
Sbjct: 471 EVTFNTLMQGRCREGKVEAARELIEEMKSRGIKPDHISYNTLISGYSKRGDMKDAFRVRD 530

Query: 446 ELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGN 503
           E++  G  P ++ YN +I G CK      A Q+L+EM   G+ P+  T+  L +  GN
Sbjct: 531 EMLSIGFNPTLLTYNALIQGLCKNEEGDHAEQLLKEMISKGITPNDNTYLSLIEGIGN 588



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 105/393 (26%), Positives = 201/393 (51%), Gaps = 7/393 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   ++ +A +    M++ G  PNVV+Y T+IHGYC  G ++ A  +FD M+  GV P+
Sbjct: 201 LCKEGKLKKAKEFIGLMEALGIKPNVVTYNTIIHGYCSRGRVEGARMIFDLMKCRGVKPD 260

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           S TY   + G+ +   +E A+ ++    E+MK E  L      +  L+D  C +G +   
Sbjct: 261 SYTYGSFISGMCKEGKLEEASGML----EKMK-EIGLRPTAVTYNTLIDGYCNKGNLEMA 315

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           F   + M +   +        +I +L    +   A  ++  M ++GL P  V+YN +++G
Sbjct: 316 FDYRDKMVREGLMPTVSTYNMLIHALFLDCKMDEADGIIKEMSEKGLVPDSVTYNILING 375

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            C+ G   +A+ L +E I  G  P+  TY  L+  L     +++A  + + ++ K     
Sbjct: 376 YCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYVLSKRGRMKQADDLFEKIVRKGIFPD 435

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
             + N  +   C   N      +L  M Q +  PD +T NT++ G C+ G++E A +++ 
Sbjct: 436 LIMFNALIDGHCANGNMDRAFAMLKEMDQMKVVPDEVTFNTLMQGRCREGKVEAARELIE 495

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           +M   +   PD +++ T+I G    G +++A  +  +++   G++P ++TYNA+++GL +
Sbjct: 496 EM-KSRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEML-SIGFNPTLLTYNALIQGLCK 553

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 396
               + A+++   M+  G+  +  TY  +I+G+
Sbjct: 554 NEEGDHAEQLLKEMISKGITPNDNTYLSLIEGI 586



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 86/295 (29%), Positives = 144/295 (48%), Gaps = 4/295 (1%)

Query: 212 YKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVL-VFM 270
           Y +L+   C     + A +    M  K  +     CN  L +L L  N TE   VL   M
Sbjct: 124 YDLLIRACCELKRGDDAFECFDMMKGKGVIPHVHACNDML-SLFLKSNRTEKAWVLYAEM 182

Query: 271 LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR 330
            + + +  V+T N +IN  CK G++++A + +  M A     P+ VT+ TII G  + GR
Sbjct: 183 FRMRIKSSVVTFNIMINVLCKEGKLKKAKEFIGLMEALGI-KPNVVTYNTIIHGYCSRGR 241

Query: 331 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYA 390
           ++ A  +++ +M  RG  P   TY + + G+ +  ++EEA  +   M  IG+   + TY 
Sbjct: 242 VEGA-RMIFDLMKCRGVKPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLRPTAVTYN 300

Query: 391 IVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 450
            +IDG C    L+ A  + D +V    +     Y  +I  L    K+ EA   + E+ + 
Sbjct: 301 TLIDGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALFLDCKMDEADGIIKEMSEK 360

Query: 451 GVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
           G+ P+ V YN++I+G C+    ++A+ +  EM   G+ P  VT+  L  +   RG
Sbjct: 361 GLVPDSVTYNILINGYCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYVLSKRG 415



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 64/114 (56%), Gaps = 5/114 (4%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M   C   +V  A +L  +MKSRG  P+ +SY TLI GY + G+M  A++V DEM   G 
Sbjct: 478 MQGRCREGKVEAARELIEEMKSRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMLSIGF 537

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSL 114
            P  LTY+ L++G+ +  + + A  L+ ++  +      ++ N+  + +L++ +
Sbjct: 538 NPTLLTYNALIQGLCKNEEGDHAEQLLKEMISK-----GITPNDNTYLSLIEGI 586



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/184 (20%), Positives = 77/184 (41%), Gaps = 40/184 (21%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C    +  A  +  +M     VP+ V++ TL+ G CR G+++ A ++ +EM+  G+
Sbjct: 443 IDGHCANGNMDRAFAMLKEMDQMKVVPDEVTFNTLMQGRCREGKVEAARELIEEMKSRGI 502

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ ++Y+ L+ G  +  D++ A                                     
Sbjct: 503 KPDHISYNTLISGYSKRGDMKDA------------------------------------- 525

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
              FR+ ++M              +I  LC++     A +++  M  +G+TP+  +Y S+
Sbjct: 526 ---FRVRDEMLSIGFNPTLLTYNALIQGLCKNEEGDHAEQLLKEMISKGITPNDNTYLSL 582

Query: 181 VHGL 184
           + G+
Sbjct: 583 IEGI 586



 Score = 41.2 bits (95), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 70/150 (46%), Gaps = 5/150 (3%)

Query: 367 VEEAKEVFNCMLGI--GVVADST--TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
           V   +EVFN  LG+  GV+   T   Y ++I   CE  + D+A   +D +     I   +
Sbjct: 99  VYSIREVFN-ELGVARGVLGIKTYVLYDLLIRACCELKRGDDAFECFDMMKGKGVIPHVH 157

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
               M+    +S +  +A     E+    +  ++V +N++I+  CK    ++A + +  M
Sbjct: 158 ACNDMLSLFLKSNRTEKAWVLYAEMFRMRIKSSVVTFNIMINVLCKEGKLKKAKEFIGLM 217

Query: 483 RKNGLNPDAVTWRILDKLHGNRGNDFGLRI 512
              G+ P+ VT+  +   + +RG   G R+
Sbjct: 218 EALGIKPNVVTYNTIIHGYCSRGRVEGARM 247


>gi|255584017|ref|XP_002532754.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527505|gb|EEF29631.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 721

 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 133/460 (28%), Positives = 220/460 (47%), Gaps = 21/460 (4%)

Query: 55  MRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSL 114
           M+ C ++P   T S L+ G+LR R      +L+F        + D+ +    ++ +V SL
Sbjct: 87  MKDCNLMPEVRTLSALLNGLLRFRRFNDV-LLLFDDIVSANVQPDIYI----YSAVVRSL 141

Query: 115 CREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSL 174
           C     N+   +   M   +          +I  LC+S R   A  +   + ++GL  ++
Sbjct: 142 CELKDFNKAKEMIHWMEFNQCKLSIVVYNVLIHGLCKSRRIWEALEIKNCLMQKGLEANV 201

Query: 175 VSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQF 234
           V+Y         +G    A  L +E  + G   +  TY +L++  C   +++ A   L  
Sbjct: 202 VTY---------YGKFNEAELLFKEMGEKGLCANHITYSILIDSFCRRGEMDNAIGFLDK 252

Query: 235 MLSKKDVDRTRIC-NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMG 293
           M +K  ++ T    N  +   C + N +        M+     P V+T  ++I+G+C  G
Sbjct: 253 M-TKASIEFTVYPYNSLINGYCKLGNASAAKYYFDEMIDKGLTPTVVTYTSLISGYCNEG 311

Query: 294 RIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVT 353
              +A KV N+M A K  +P+  TFT II GL     + EA+ L  + M +R   P  VT
Sbjct: 312 EWHKAFKVYNEMTA-KGISPNTYTFTAIISGLCRANMMAEAIRLFGE-MKERKIMPSEVT 369

Query: 354 YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413
           YN ++ G  R   + EA  + + M+G G V D+ TY  +I GLC   ++ EAK F DD+ 
Sbjct: 370 YNVMIEGHCRSGNISEAFHLLDEMVGKGFVPDTYTYRPLISGLCSVGRVSEAKEFVDDLH 429

Query: 414 WPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKR 473
              +  +N  Y+A++ G C+ G+  +AV     +V+ GV  ++VCY ++IDG  +    R
Sbjct: 430 KDHHKLNNMCYSALVHGYCKEGRFKDAVSACRVMVERGVAMDLVCYAILIDGTAREHDTR 489

Query: 474 EAYQILREMRKNGLNPDAVTWRILDKLHGNRGN---DFGL 510
             + +L+EM  +GL PDAV +  +   H   GN    FGL
Sbjct: 490 ALFGLLKEMHNHGLRPDAVIYTNMIDRHSKAGNLKEAFGL 529



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 125/498 (25%), Positives = 231/498 (46%), Gaps = 18/498 (3%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           +  EA  LF +M  +G   N ++Y+ LI  +CR GEMD A    D+M    +      Y+
Sbjct: 207 KFNEAELLFKEMGEKGLCANHITYSILIDSFCRRGEMDNAIGFLDKMTKASIEFTVYPYN 266

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
            L+ G  +  +   A     ++ ++      L+     + +L+   C EG  ++ F++  
Sbjct: 267 SLINGYCKLGNASAAKYYFDEMIDK-----GLTPTVVTYTSLISGYCNEGEWHKAFKVYN 321

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
           +M         +    +I  LCR+     A R+   M++R + PS V+YN ++ G C+ G
Sbjct: 322 EMTAKGISPNTYTFTAIISGLCRANMMAEAIRLFGEMKERKIMPSEVTYNVMIEGHCRSG 381

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
               A+ LL+E +  G++P  +TY+ L+ GLC    + +A++ +  +      D  ++ N
Sbjct: 382 NISEAFHLLDEMVGKGFVPDTYTYRPLISGLCSVGRVSEAKEFVDDLHK----DHHKLNN 437

Query: 249 IYLRAL----CLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
           +   AL    C      + ++    M++     D++    +I+G  +         +L +
Sbjct: 438 MCYSALVHGYCKEGRFKDAVSACRVMVERGVAMDLVCYAILIDGTAREHDTRALFGLLKE 497

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
           M       PDAV +T +I      G ++EA  L + +M   G  P +VTY A++ GL + 
Sbjct: 498 M-HNHGLRPDAVIYTNMIDRHSKAGNLKEAFGL-WDIMVDEGCLPNVVTYTALINGLCKA 555

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY 424
             +++A+ +    L   V  +  TY   +D L     +++A +    ++    +     Y
Sbjct: 556 GLMDKAELLSKETLVSDVTPNHITYGCFLDHLTRGGNMEKAVQLHHAML-KGFLATTVSY 614

Query: 425 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484
             +I+G CR GKI EA   L+ + D+ + P+ + Y+ +I   CK S  +EA ++   M  
Sbjct: 615 NILIRGFCRLGKIEEATKLLHGMTDNDILPDYITYSTIIYEQCKRSNLQEAIKLWHTMLD 674

Query: 485 NGLNPDAVTWRILDKLHG 502
            GL PD + +  L  +HG
Sbjct: 675 KGLKPDTLAYSFL--VHG 690



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 121/457 (26%), Positives = 221/457 (48%), Gaps = 16/457 (3%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C L     A   F +M  +G  P VV+YT+LI GYC  GE   A+KV++EM   G+ PN+
Sbjct: 273 CKLGNASAAKYYFDEMIDKGLTPTVVTYTSLISGYCNEGEWHKAFKVYNEMTAKGISPNT 332

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
            T++ ++ G+ R   +  A     +L+  MKE + +  +   +  +++  CR G ++E F
Sbjct: 333 YTFTAIISGLCRANMMAEA----IRLFGEMKERKIMP-SEVTYNVMIEGHCRSGNISEAF 387

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
            + ++M     V + +    +I  LC  GR   A   V  + K     + + Y+++VHG 
Sbjct: 388 HLLDEMVGKGFVPDTYTYRPLISGLCSVGRVSEAKEFVDDLHKDHHKLNNMCYSALVHGY 447

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM----LSKKD 240
           CK G    A       ++ G       Y +L++G   E D      +L+ M    L    
Sbjct: 448 CKEGRFKDAVSACRVMVERGVAMDLVCYAILIDGTAREHDTRALFGLLKEMHNHGLRPDA 507

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           V  T + + + +A     N  E   +   M+   C P+V+T   +ING CK G +++A +
Sbjct: 508 VIYTNMIDRHSKA----GNLKEAFGLWDIMVDEGCLPNVVTYTALINGLCKAGLMDKA-E 562

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +L+         P+ +T+   +  L   G +++A+ L + ++  +G+    V+YN ++RG
Sbjct: 563 LLSKETLVSDVTPNHITYGCFLDHLTRGGNMEKAVQLHHAML--KGFLATTVSYNILIRG 620

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
             RL ++EEA ++ + M    ++ D  TY+ +I   C+ + L EA + W  ++      D
Sbjct: 621 FCRLGKIEEATKLLHGMTDNDILPDYITYSTIIYEQCKRSNLQEAIKLWHTMLDKGLKPD 680

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIV 457
              Y+ ++ G C +G++ +A     E++  G+  N V
Sbjct: 681 TLAYSFLVHGCCIAGELEKAFELRDEMIRRGMRSNHV 717



 Score =  168 bits (425), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 129/496 (26%), Positives = 216/496 (43%), Gaps = 23/496 (4%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           MK    +P V + + L++G  R    +    +FD++    V P+   YS +VR +   +D
Sbjct: 87  MKDCNLMPEVRTLSALLNGLLRFRRFNDVLLLFDDIVSANVQPDIYIYSAVVRSLCELKD 146

Query: 80  VERA-------------------NVLMFKLWERMKEEEDLSVNNAAFANLVDS--LCREG 118
             +A                   NVL+  L +  +  E L + N      +++  +   G
Sbjct: 147 FNKAKEMIHWMEFNQCKLSIVVYNVLIHGLCKSRRIWEALEIKNCLMQKGLEANVVTYYG 206

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
             NE   + ++M +            +IDS CR G    A   +  M K  +  ++  YN
Sbjct: 207 KFNEAELLFKEMGEKGLCANHITYSILIDSFCRRGEMDNAIGFLDKMTKASIEFTVYPYN 266

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
           S+++G CK G    A    +E I  G  P+  TY  L+ G C E +  KA KV   M +K
Sbjct: 267 SLINGYCKLGNASAAKYYFDEMIDKGLTPTVVTYTSLISGYCNEGEWHKAFKVYNEMTAK 326

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
                T      +  LC      E + +   M + +  P  +T N +I G C+ G I EA
Sbjct: 327 GISPNTYTFTAIISGLCRANMMAEAIRLFGEMKERKIMPSEVTYNVMIEGHCRSGNISEA 386

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
             +L++MV GK   PD  T+  +I GL +VGR+ EA   +   + +  +    + Y+A++
Sbjct: 387 FHLLDEMV-GKGFVPDTYTYRPLISGLCSVGRVSEAKEFV-DDLHKDHHKLNNMCYSALV 444

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
            G  +  R ++A      M+  GV  D   YAI+IDG    +          ++      
Sbjct: 445 HGYCKEGRFKDAVSACRVMVERGVAMDLVCYAILIDGTAREHDTRALFGLLKEMHNHGLR 504

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI 478
            D  +Y  MI    ++G + EA      +VD G  PN+V Y  +I+G CK  +  +A  +
Sbjct: 505 PDAVIYTNMIDRHSKAGNLKEAFGLWDIMVDEGCLPNVVTYTALINGLCKAGLMDKAELL 564

Query: 479 LREMRKNGLNPDAVTW 494
            +E   + + P+ +T+
Sbjct: 565 SKETLVSDVTPNHITY 580



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 127/538 (23%), Positives = 234/538 (43%), Gaps = 50/538 (9%)

Query: 3   QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
            LC L    +A ++   M+      ++V Y  LIHG C++  +  A ++ + +   G+  
Sbjct: 140 SLCELKDFNKAKEMIHWMEFNQCKLSIVVYNVLIHGLCKSRRIWEALEIKNCLMQKGLEA 199

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           N +TY               A +L  ++ E+      L  N+  ++ L+DS CR G ++ 
Sbjct: 200 NVVTY---------YGKFNEAELLFKEMGEK-----GLCANHITYSILIDSFCRRGEMDN 245

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
                + M +       +    +I+  C+ G    A      M  +GLTP++V+Y S++ 
Sbjct: 246 AIGFLDKMTKASIEFTVYPYNSLINGYCKLGNASAAKYYFDEMIDKGLTPTVVTYTSLIS 305

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           G C  G   +A+++  E    G  P+ +T+  ++ GLC  + + +A ++   M  +K + 
Sbjct: 306 GYCNEGEWHKAFKVYNEMTAKGISPNTYTFTAIISGLCRANMMAEAIRLFGEMKERKIMP 365

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
                N+ +   C   N +E  ++L  M+     PD  T   +I+G C +GR+ EA + +
Sbjct: 366 SEVTYNVMIEGHCRSGNISEAFHLLDEMVGKGFVPDTYTYRPLISGLCSVGRVSEAKEFV 425

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
           +D+        + + ++ ++ G    GR ++A++   +VM +RG +  +V Y  ++ G  
Sbjct: 426 DDLHKDHH-KLNNMCYSALVHGYCKEGRFKDAVSAC-RVMVERGVAMDLVCYAILIDGTA 483

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
           R         +   M   G+  D+  Y  +ID   ++  L EA   WD +V    + +  
Sbjct: 484 REHDTRALFGLLKEMHNHGLRPDAVIYTNMIDRHSKAGNLKEAFGLWDIMVDEGCLPNVV 543

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN--------------------------- 455
            Y A+I GLC++G + +A     E + S VTPN                           
Sbjct: 544 TYTALINGLCKAGLMDKAELLSKETLVSDVTPNHITYGCFLDHLTRGGNMEKAVQLHHAM 603

Query: 456 -------IVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
                   V YN++I G C+L    EA ++L  M  N + PD +T+  +      R N
Sbjct: 604 LKGFLATTVSYNILIRGFCRLGKIEEATKLLHGMTDNDILPDYITYSTIIYEQCKRSN 661



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 110/391 (28%), Positives = 186/391 (47%), Gaps = 20/391 (5%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC  + + EA +LF +MK R  +P+ V+Y  +I G+CR+G +  A+ + DEM   G +P+
Sbjct: 342 LCRANMMAEAIRLFGEMKERKIMPSEVTYNVMIEGHCRSGNISEAFHLLDEMVGKGFVPD 401

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           + TY  L+ G+     V  A   +  L      ++   +NN  ++ LV   C+EG   + 
Sbjct: 402 TYTYRPLISGLCSVGRVSEAKEFVDDL-----HKDHHKLNNMCYSALVHGYCKEGRFKDA 456

Query: 124 FRIAEDMPQGKSVNEEFAC-GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
                 M + + V  +  C   +ID   R         ++  M   GL P  V Y +++ 
Sbjct: 457 VSACRVMVE-RGVAMDLVCYAILIDGTAREHDTRALFGLLKEMHNHGLRPDAVIYTNMID 515

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK--- 239
              K G    A+ L +  +  G LP+  TY  L+ GLC    ++KA      +LSK+   
Sbjct: 516 RHSKAGNLKEAFGLWDIMVDEGCLPNVVTYTALINGLCKAGLMDKAE-----LLSKETLV 570

Query: 240 -DVDRTRIC-NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
            DV    I    +L  L    N  + + +   ML+      V + N +I GFC++G+IEE
Sbjct: 571 SDVTPNHITYGCFLDHLTRGGNMEKAVQLHHAMLKGFLATTV-SYNILIRGFCRLGKIEE 629

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           A K+L+ M       PD +T++TII+       +QEA+  L+  M  +G  P  + Y+ +
Sbjct: 630 ATKLLHGMTDNDI-LPDYITYSTIIYEQCKRSNLQEAIK-LWHTMLDKGLKPDTLAYSFL 687

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTT 388
           + G      +E+A E+ + M+  G+ ++  T
Sbjct: 688 VHGCCIAGELEKAFELRDEMIRRGMRSNHVT 718



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 94/204 (46%), Gaps = 6/204 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D+      + EA  L+  M   G +PNVV+YT LI+G C+ G MD A  +  E     V
Sbjct: 514 IDRHSKAGNLKEAFGLWDIMVDEGCLPNVVTYTALINGLCKAGLMDKAELLSKETLVSDV 573

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +TY   +  + R  ++E+A  L   + +             ++  L+   CR G +
Sbjct: 574 TPNHITYGCFLDHLTRGGNMEKAVQLHHAMLK------GFLATTVSYNILIRGFCRLGKI 627

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E  ++   M     + +      +I   C+      A ++ + M  +GL P  ++Y+ +
Sbjct: 628 EEATKLLHGMTDNDILPDYITYSTIIYEQCKRSNLQEAIKLWHTMLDKGLKPDTLAYSFL 687

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFG 204
           VHG C  G   +A++L +E I+ G
Sbjct: 688 VHGCCIAGELEKAFELRDEMIRRG 711


>gi|242058007|ref|XP_002458149.1| hypothetical protein SORBIDRAFT_03g027690 [Sorghum bicolor]
 gi|241930124|gb|EES03269.1| hypothetical protein SORBIDRAFT_03g027690 [Sorghum bicolor]
          Length = 795

 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 145/533 (27%), Positives = 245/533 (45%), Gaps = 44/533 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMK-SRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCG 59
           +D L  + R+ EA +L   M  + G   +V   TTL+ GYC  GE+  A  +FDE    G
Sbjct: 265 VDVLVKVGRMDEALRLKDQMLLATGKKMDVFLATTLMQGYCLHGEIGKALDLFDEAVRDG 324

Query: 60  VLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGY 119
           V P ++TY+VL++G     D E      +KL  +M E+  L  +   F  ++  L R   
Sbjct: 325 VTPTNVTYTVLIKGC----DAEGMTDETYKLCRQMIEQ-GLLPSTYEFNLVIKGLLRNKQ 379

Query: 120 VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
             +   +  D+     V + F  G +I  L +  + H A  +   M++ G+ PS+V+ +S
Sbjct: 380 WEDAIALF-DLVVDTGVPDVFTYGCLIHWLSKHHKVHEAVNLWDKMKEAGVKPSIVTCHS 438

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++ G C+ G    A +L  E    G+ P+E TY  L++G   +   +KA  +L  M    
Sbjct: 439 LLLGYCEKGCMDEALKLYSEMPGKGFPPNEVTYTTLMKGYIKKKAFDKAYALLNEMHQNG 498

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                   NI +  LC++    E+  +L   +     P  +T N++INGF K G +  AL
Sbjct: 499 VSCGEYTYNILINGLCMVDRVCEVDEMLKRFVSEGFVPTTMTYNSIINGFVKAGMMGSAL 558

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFG-------------------------------LLNV 328
            +   M   K   P+ VT+T+ I G                                +N+
Sbjct: 559 AMYRQMCE-KGITPNIVTYTSFIDGYCRTNCCDLAVKLLIYMRCNGIHPDIAAYNAFINM 617

Query: 329 ----GRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 384
               G +  AL+ L  ++ + G +P +  YN+ + G   L+ + EA + +  M+   + A
Sbjct: 618 FCKQGNMSHALHFLVLLL-KDGLTPNVTVYNSFVTGYKNLKMMAEASKFYYSMIKQRIAA 676

Query: 385 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFL 444
           D+  Y  +IDG  +   +  A   + +++   NI D+  + A+  GLCRSG I  A   L
Sbjct: 677 DTEIYTTLIDGFSKVGNVAFALELYSEMLANHNIPDDKTFTALTHGLCRSGDIDGAKRLL 736

Query: 445 YELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            ++    V PN V YN++I+   +    +EA+Q+  +M  +G+ PD  T+ I 
Sbjct: 737 DDMTRLDVCPNTVTYNMLINAHIRDGKLQEAFQLHDKMLSSGVVPDDTTYNIF 789



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 126/500 (25%), Positives = 229/500 (45%), Gaps = 44/500 (8%)

Query: 8   SRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMD-VAYKVFDEMRHCGVLPNSLT 66
           +   +A  LF +M+ +G+  +   Y  ++   C  G M   A ++FDEM   GV P+   
Sbjct: 167 ASAADALTLFDEMRCKGYYADAKMYDVVMRA-CVVGRMHGDAVRLFDEMAGAGVKPDERV 225

Query: 67  YSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRI 126
           Y++ + G+ + RD +RA  ++ K+ E   +  D + N+     +VD L + G ++E  R+
Sbjct: 226 YAITITGLCKLRDADRAVQVLGKMREAGLKPRDFTYNS-----VVDVLVKVGRMDEALRL 280

Query: 127 AEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK 186
            + M          A G  +D    +                          +++ G C 
Sbjct: 281 KDQM--------LLATGKKMDVFLAT--------------------------TLMQGYCL 306

Query: 187 HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRI 246
           HG   +A  L +E ++ G  P+  TY VL++G   E   ++  K+ + M+ +  +  T  
Sbjct: 307 HGEIGKALDLFDEAVRDGVTPTNVTYTVLIKGCDAEGMTDETYKLCRQMIEQGLLPSTYE 366

Query: 247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV 306
            N+ ++ L   K   + + +   ++ T   PDV T   +I+   K  ++ EA+ + + M 
Sbjct: 367 FNLVIKGLLRNKQWEDAIALFDLVVDTGV-PDVFTYGCLIHWLSKHHKVHEAVNLWDKMK 425

Query: 307 AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 366
                 P  VT  +++ G    G + EAL L Y  MP +G+ P  VTY  +++G  + + 
Sbjct: 426 EAGV-KPSIVTCHSLLLGYCEKGCMDEALKL-YSEMPGKGFPPNEVTYTTLMKGYIKKKA 483

Query: 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAA 426
            ++A  + N M   GV     TY I+I+GLC  +++ E        V    +     Y +
Sbjct: 484 FDKAYALLNEMHQNGVSCGEYTYNILINGLCMVDRVCEVDEMLKRFVSEGFVPTTMTYNS 543

Query: 427 MIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG 486
           +I G  ++G +  A+    ++ + G+TPNIV Y   IDG C+ +    A ++L  MR NG
Sbjct: 544 IINGFVKAGMMGSALAMYRQMCEKGITPNIVTYTSFIDGYCRTNCCDLAVKLLIYMRCNG 603

Query: 487 LNPDAVTWRILDKLHGNRGN 506
           ++PD   +     +   +GN
Sbjct: 604 IHPDIAAYNAFINMFCKQGN 623



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 62/144 (43%)

Query: 339 YQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE 398
           Y  M  RG  P   +   +L    R     +A  +F+ M   G  AD+  Y +V+     
Sbjct: 141 YSRMVTRGVVPDAKSRTDLLVATARGASAADALTLFDEMRCKGYYADAKMYDVVMRACVV 200

Query: 399 SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVC 458
                +A R +D++       D  VYA  I GLC+      AV  L ++ ++G+ P    
Sbjct: 201 GRMHGDAVRLFDEMAGAGVKPDERVYAITITGLCKLRDADRAVQVLGKMREAGLKPRDFT 260

Query: 459 YNVVIDGACKLSMKREAYQILREM 482
           YN V+D   K+    EA ++  +M
Sbjct: 261 YNSVVDVLVKVGRMDEALRLKDQM 284



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 59/122 (48%), Gaps = 2/122 (1%)

Query: 374 FNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR 433
           ++ M+  GVV D+ +   ++          +A   +D++       D  +Y  +++  C 
Sbjct: 141 YSRMVTRGVVPDAKSRTDLLVATARGASAADALTLFDEMRCKGYYADAKMYDVVMRA-CV 199

Query: 434 SGKIH-EAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAV 492
            G++H +AV    E+  +GV P+   Y + I G CKL     A Q+L +MR+ GL P   
Sbjct: 200 VGRMHGDAVRLFDEMAGAGVKPDERVYAITITGLCKLRDADRAVQVLGKMREAGLKPRDF 259

Query: 493 TW 494
           T+
Sbjct: 260 TY 261


>gi|356519743|ref|XP_003528529.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Glycine max]
          Length = 556

 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 123/473 (26%), Positives = 228/473 (48%), Gaps = 10/473 (2%)

Query: 32  YTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLW 91
           Y T+++ Y  +   D A      M H G +P S T++ L+  ++R+   ++A       W
Sbjct: 92  YDTVVNAYVHSHSTDQALTFLHHMIHEGHVPLSNTFNNLLCLLIRSNYFDKA-------W 144

Query: 92  ERMKEEEDLSVNNA-AFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC 150
               E +   V +A +F  ++   C  GY  + FR+   + +            +ID  C
Sbjct: 145 WIFNELKSKVVLDAYSFGIMIKGCCEAGYFVKGFRLLAMLEEFGLSPNVVIYTTLIDGCC 204

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
           + G    A  +   M + GL P+  +Y+ +++G  K G     +Q+ E   + G +P+ +
Sbjct: 205 KDGNVMLAKNLFCKMNRLGLVPNPHTYSVLMNGFFKQGLQREGFQMYENMKRSGIVPNAY 264

Query: 211 TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM 270
            Y  L+   C +  ++KA KV   M  K         NI +  LC  K   E + ++  +
Sbjct: 265 AYNCLISEYCNDGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKV 324

Query: 271 LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR 330
            +    P+++T N +INGFC + +++ A+++ N + +    +P  VT+ T+I G   V  
Sbjct: 325 NKVGLSPNIVTYNILINGFCDVRKMDSAVRLFNQLKSSGL-SPTLVTYNTLIAGYSKVEN 383

Query: 331 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYA 390
           +  AL+L+ + M +R  +P  VTY  ++    RL   E+A E+ + M   G+V D  TY+
Sbjct: 384 LAGALDLVKE-MEERCIAPSKVTYTILIDAFARLNHTEKACEMHSLMEKSGLVPDVYTYS 442

Query: 391 IVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 450
           +++ GLC    + EA + +  +       ++ +Y  MI G C+ G  + A+  L E+V S
Sbjct: 443 VLLHGLCVHGNMKEASKLFKSLGEMHLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVQS 502

Query: 451 GVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGN 503
           G+ PN+  +   I   C+    +EA  +L +M  +GL P    ++++ K+ G+
Sbjct: 503 GMVPNVASFCSTIGLLCRDEKWKEAELLLGQMINSGLKPSVSLYKMVHKVKGD 555



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 104/383 (27%), Positives = 187/383 (48%), Gaps = 17/383 (4%)

Query: 15  KLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGV 74
           +L   ++  G  PNVV YTTLI G C+ G + +A  +F +M   G++PN  TYSVL+ G 
Sbjct: 179 RLLAMLEEFGLSPNVVIYTTLIDGCCKDGNVMLAKNLFCKMNRLGLVPNPHTYSVLMNGF 238

Query: 75  LRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGK 134
            + + ++R     F+++E MK    +  N  A+  L+   C +G V++ F++  +M +  
Sbjct: 239 FK-QGLQREG---FQMYENMK-RSGIVPNAYAYNCLISEYCNDGMVDKAFKVFAEMRE-- 291

Query: 135 SVNEEFACGHM-----IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG 189
              +  ACG M     I  LCR  +   A ++V+ + K GL+P++V+YN +++G C    
Sbjct: 292 ---KGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVRK 348

Query: 190 CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNI 249
              A +L  +    G  P+  TY  L+ G     +L  A  +++ M  +          I
Sbjct: 349 MDSAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIAPSKVTYTI 408

Query: 250 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK 309
            + A   + +  +   +   M ++   PDV T + +++G C  G ++EA K+   +    
Sbjct: 409 LIDAFARLNHTEKACEMHSLMEKSGLVPDVYTYSVLLHGLCVHGNMKEASKLFKSL-GEM 467

Query: 310 FCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEE 369
              P++V + T+I G    G    AL LL + M Q G  P + ++ + +  L R  + +E
Sbjct: 468 HLQPNSVIYNTMIHGYCKEGSSYRALRLLNE-MVQSGMVPNVASFCSTIGLLCRDEKWKE 526

Query: 370 AKEVFNCMLGIGVVADSTTYAIV 392
           A+ +   M+  G+    + Y +V
Sbjct: 527 AELLLGQMINSGLKPSVSLYKMV 549



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 103/451 (22%), Positives = 204/451 (45%), Gaps = 43/451 (9%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           +A  +F ++KS+  V +  S+  +I G C  G     +++   +   G+ PN + Y+ L+
Sbjct: 142 KAWWIFNELKSKV-VLDAYSFGIMIKGCCEAGYFVKGFRLLAMLEEFGLSPNVVIYTTLI 200

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP 131
            G  +  +V  A  L  K+         L  N   ++ L++   ++G   E F++ E+M 
Sbjct: 201 DGCCKDGNVMLAKNLFCKM-----NRLGLVPNPHTYSVLMNGFFKQGLQREGFQMYENMK 255

Query: 132 QGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCM 191
           +   V   +A   +I   C  G    A +V   MR++G+   +++YN ++ GLC+     
Sbjct: 256 RSGIVPNAYAYNCLISEYCNDGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFG 315

Query: 192 RAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYL 251
            A +L+ +  + G  P+  TY +L+ G C    ++ A ++   + S              
Sbjct: 316 EAVKLVHKVNKVGLSPNIVTYNILINGFCDVRKMDSAVRLFNQLKS-------------- 361

Query: 252 RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC 311
                                +   P ++T NT+I G+ K+  +  AL ++ +M   +  
Sbjct: 362 ---------------------SGLSPTLVTYNTLIAGYSKVENLAGALDLVKEM-EERCI 399

Query: 312 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK 371
           AP  VT+T +I     +   ++A   ++ +M + G  P + TY+ +L GL     ++EA 
Sbjct: 400 APSKVTYTILIDAFARLNHTEKACE-MHSLMEKSGLVPDVYTYSVLLHGLCVHGNMKEAS 458

Query: 372 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 431
           ++F  +  + +  +S  Y  +I G C+      A R  +++V    + +   + + I  L
Sbjct: 459 KLFKSLGEMHLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVQSGMVPNVASFCSTIGLL 518

Query: 432 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVV 462
           CR  K  EA   L ++++SG+ P++  Y +V
Sbjct: 519 CRDEKWKEAELLLGQMINSGLKPSVSLYKMV 549



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/271 (22%), Positives = 117/271 (43%), Gaps = 34/271 (12%)

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV-------AGKF-- 310
           P+ L+  L     T C       +TV+N +      ++AL  L+ M+       +  F  
Sbjct: 70  PSSLMLQLTQAHFTPCSTYTPLYDTVVNAYVHSHSTDQALTFLHHMIHEGHVPLSNTFNN 129

Query: 311 ------------------------CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
                                      DA +F  +I G    G   +   LL  ++ + G
Sbjct: 130 LLCLLIRSNYFDKAWWIFNELKSKVVLDAYSFGIMIKGCCEAGYFVKGFRLL-AMLEEFG 188

Query: 347 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
            SP +V Y  ++ G  +   V  AK +F  M  +G+V +  TY+++++G  +     E  
Sbjct: 189 LSPNVVIYTTLIDGCCKDGNVMLAKNLFCKMNRLGLVPNPHTYSVLMNGFFKQGLQREGF 248

Query: 407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466
           + ++++     + + Y Y  +I   C  G + +A     E+ + G+   ++ YN++I G 
Sbjct: 249 QMYENMKRSGIVPNAYAYNCLISEYCNDGMVDKAFKVFAEMREKGIACGVMTYNILIGGL 308

Query: 467 CKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           C+     EA +++ ++ K GL+P+ VT+ IL
Sbjct: 309 CRGKKFGEAVKLVHKVNKVGLSPNIVTYNIL 339



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 100/213 (46%), Gaps = 2/213 (0%)

Query: 293 GRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIV 352
           GRI  +L +         C+     + T++   ++     +AL  L+  M   G+ P   
Sbjct: 67  GRIPSSLMLQLTQAHFTPCSTYTPLYDTVVNAYVHSHSTDQALTFLHH-MIHEGHVPLSN 125

Query: 353 TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI 412
           T+N +L  L R    ++A  +FN  L   VV D+ ++ I+I G CE+    +  R    +
Sbjct: 126 TFNNLLCLLIRSNYFDKAWWIFN-ELKSKVVLDAYSFGIMIKGCCEAGYFVKGFRLLAML 184

Query: 413 VWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMK 472
                  +  +Y  +I G C+ G +  A +   ++   G+ PN   Y+V+++G  K  ++
Sbjct: 185 EEFGLSPNVVIYTTLIDGCCKDGNVMLAKNLFCKMNRLGLVPNPHTYSVLMNGFFKQGLQ 244

Query: 473 REAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
           RE +Q+   M+++G+ P+A  +  L   + N G
Sbjct: 245 REGFQMYENMKRSGIVPNAYAYNCLISEYCNDG 277


>gi|15226343|ref|NP_178283.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216739|sp|Q9ZUA2.1|PP141_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g01740
 gi|4220475|gb|AAD12698.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250397|gb|AEC05491.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 559

 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 116/485 (23%), Positives = 234/485 (48%), Gaps = 10/485 (2%)

Query: 22  SRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVE 81
           SRG+ P+  S+ +++   C+ G++  A  +   M   G  P+ ++Y+ L+ G  R  D+ 
Sbjct: 49  SRGYTPHRSSFNSVVSFVCKLGQVKFAEDIVHSMPRFGCEPDVISYNSLIDGHCRNGDIR 108

Query: 82  RANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFA 141
            A++++  L  R         +  +F +L +   +   ++EVF     M +  S N    
Sbjct: 109 SASLVLESL--RASHGFICKPDIVSFNSLFNGFSKMKMLDEVFVYMGVMLKCCSPNV-VT 165

Query: 142 CGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGI 201
               ID+ C+SG    A +  + M++  L+P++V++  ++ G CK G    A  L +E  
Sbjct: 166 YSTWIDTFCKSGELQLALKSFHSMKRDALSPNVVTFTCLIDGYCKAGDLEVAVSLYKEMR 225

Query: 202 QFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPT 261
           +     +  TY  L++G C + ++++A ++   M+  +    + +    +       +  
Sbjct: 226 RVRMSLNVVTYTALIDGFCKKGEMQRAEEMYSRMVEDRVEPNSLVYTTIIDGFFQRGDSD 285

Query: 262 ELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTI 321
             +  L  ML    + D+     +I+G C  G+++EA +++ DM       PD V FTT+
Sbjct: 286 NAMKFLAKMLNQGMRLDITAYGVIISGLCGNGKLKEATEIVEDMEKSDL-VPDMVIFTTM 344

Query: 322 IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG 381
           +      GR++ A+N+ Y  + +RG+ P +V  + ++ G+ +  ++ EA  V+ C+    
Sbjct: 345 MNAYFKSGRMKAAVNM-YHKLIERGFEPDVVALSTMIDGIAKNGQLHEAI-VYFCIEK-- 400

Query: 382 VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAV 441
             A+   Y ++ID LC+     E +R +  I     + D ++Y + I GLC+ G + +A 
Sbjct: 401 --ANDVMYTVLIDALCKEGDFIEVERLFSKISEAGLVPDKFMYTSWIAGLCKQGNLVDAF 458

Query: 442 HFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLH 501
                +V  G+  +++ Y  +I G     +  EA Q+  EM  +G++PD+  + +L + +
Sbjct: 459 KLKTRMVQEGLLLDLLAYTTLIYGLASKGLMVEARQVFDEMLNSGISPDSAVFDLLIRAY 518

Query: 502 GNRGN 506
              GN
Sbjct: 519 EKEGN 523



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 94/378 (24%), Positives = 173/378 (45%), Gaps = 35/378 (9%)

Query: 120 VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           V E  +    + +  ++ + F C   I  L  S     + + +  +  RG TP   S+NS
Sbjct: 2   VREALQFLSRLRKSSNLPDPFTCNKHIHQLINSNCGILSLKFLAYLVSRGYTPHRSSFNS 61

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           +V  +CK G    A  ++    +FG  P   +Y  L++G C   D+  A  VL+ +    
Sbjct: 62  VVSFVCKLGQVKFAEDIVHSMPRFGCEPDVISYNSLIDGHCRNGDIRSASLVLESL---- 117

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                R  + ++                       C+PD+++ N++ NGF KM  ++E  
Sbjct: 118 -----RASHGFI-----------------------CKPDIVSFNSLFNGFSKMKMLDEVF 149

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
             +  M+  K C+P+ VT++T I      G +Q AL   +  M +   SP +VT+  ++ 
Sbjct: 150 VYMGVML--KCCSPNVVTYSTWIDTFCKSGELQLALKSFHS-MKRDALSPNVVTFTCLID 206

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
           G  +   +E A  ++  M  + +  +  TY  +IDG C+  ++  A+  +  +V      
Sbjct: 207 GYCKAGDLEVAVSLYKEMRRVRMSLNVVTYTALIDGFCKKGEMQRAEEMYSRMVEDRVEP 266

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           ++ VY  +I G  + G    A+ FL ++++ G+  +I  Y V+I G C     +EA +I+
Sbjct: 267 NSLVYTTIIDGFFQRGDSDNAMKFLAKMLNQGMRLDITAYGVIISGLCGNGKLKEATEIV 326

Query: 480 REMRKNGLNPDAVTWRIL 497
            +M K+ L PD V +  +
Sbjct: 327 EDMEKSDLVPDMVIFTTM 344



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 95/362 (26%), Positives = 176/362 (48%), Gaps = 16/362 (4%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C    +  A K F  MK     PNVV++T LI GYC+ G+++VA  ++ EMR   +
Sbjct: 170 IDTFCKSGELQLALKSFHSMKRDALSPNVVTFTCLIDGYCKAGDLEVAVSLYKEMRRVRM 229

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             N +TY+ L+ G  +  +++RA     +++ RM E+  +  N+  +  ++D   + G  
Sbjct: 230 SLNVVTYTALIDGFCKKGEMQRAE----EMYSRMVEDR-VEPNSLVYTTIIDGFFQRGDS 284

Query: 121 NEVFR-IAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           +   + +A+ + QG  ++   A G +I  LC +G+   A+ +V  M K  L P +V + +
Sbjct: 285 DNAMKFLAKMLNQGMRLDIT-AYGVIISGLCGNGKLKEATEIVEDMEKSDLVPDMVIFTT 343

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK- 238
           +++   K G    A  +  + I+ G+ P       +++G+     L +A  ++ F + K 
Sbjct: 344 MMNAYFKSGRMKAAVNMYHKLIERGFEPDVVALSTMIDGIAKNGQLHEA--IVYFCIEKA 401

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
            DV  T    + + ALC   +  E+  +   + +    PD     + I G CK G + +A
Sbjct: 402 NDVMYT----VLIDALCKEGDFIEVERLFSKISEAGLVPDKFMYTSWIAGLCKQGNLVDA 457

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
            K+   MV       D + +TT+I+GL + G + EA   ++  M   G SP    ++ ++
Sbjct: 458 FKLKTRMVQEGLLL-DLLAYTTLIYGLASKGLMVEARQ-VFDEMLNSGISPDSAVFDLLI 515

Query: 359 RG 360
           R 
Sbjct: 516 RA 517



 Score = 45.1 bits (105), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 46/103 (44%)

Query: 404 EAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463
           EA +F   +   SN+ D +     I  L  S     ++ FL  LV  G TP+   +N V+
Sbjct: 4   EALQFLSRLRKSSNLPDPFTCNKHIHQLINSNCGILSLKFLAYLVSRGYTPHRSSFNSVV 63

Query: 464 DGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
              CKL   + A  I+  M + G  PD +++  L   H   G+
Sbjct: 64  SFVCKLGQVKFAEDIVHSMPRFGCEPDVISYNSLIDGHCRNGD 106


>gi|224089372|ref|XP_002308709.1| predicted protein [Populus trichocarpa]
 gi|222854685|gb|EEE92232.1| predicted protein [Populus trichocarpa]
          Length = 1115

 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 136/512 (26%), Positives = 240/512 (46%), Gaps = 21/512 (4%)

Query: 4    LCGLSRVGEAHK---LFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
            L GL + G+  K   LF  M   G  PN +++ TL+   C+  E+D+A K+F +M     
Sbjct: 586  LAGLGKEGQIQKAVQLFESMNGHGCSPNTITFNTLLDCLCKNDEVDLALKMFYKMTTMNC 645

Query: 61   LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             P+ LT++ ++ G ++   ++ A      +W   + ++ L  ++     L+  + + G +
Sbjct: 646  RPDVLTFNTIIHGFIKQNQIKNA------IWLFHQMKKLLRPDHVTLCTLLPGVIKSGQI 699

Query: 121  NEVFRIAEDM--PQGKSVNEEFACGHMIDSLCRSGRNHG---ASRVVYVMRKRGLTPSLV 175
             + FRI ED     G +++  F    M   L  +G         R+V     R +     
Sbjct: 700  EDAFRITEDFFYQVGSNIDRSFWEDVMGGILTEAGTEKAILFGERLVC----RAICKDDS 755

Query: 176  SYNSIVHGLCKHGGCMRAYQLLEEGI-QFGYLPSEHTYKVLVEGLCGESDLEKARKVLQF 234
                I+  LCKH     A  +  +   + G  P+   Y +L++G     ++E A  + + 
Sbjct: 756  VLIPIIKVLCKHKKTSVARNVFVKFTKELGVKPTLKVYNLLIDGFLEVHNVEVAWNLFEE 815

Query: 235  MLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGR 294
            M S      T   N  + A        EL ++   ML   C+P+ IT N VI+   K  R
Sbjct: 816  MKSAGCAPDTFTYNSLIDAHGKSGKINELFDLYDEMLTRGCKPNTITYNMVISNLVKSNR 875

Query: 295  IEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTY 354
            +++A+ +  ++V+G F +P   TF  +I GLL  GR+ +A + ++  M   G  P    Y
Sbjct: 876  LDKAMDLYYNLVSGDF-SPTPCTFGPLIDGLLKSGRLDDA-HEMFDGMVHYGCRPNSAIY 933

Query: 355  NAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVW 414
            N ++ G  +L  V+ A E F  M+  G+  D  +Y I++D LC + ++D+A  +++ +  
Sbjct: 934  NILVNGYGKLGHVDTACEFFKRMVKEGIRPDLKSYTILVDILCIAGRVDDALHYFEKLKQ 993

Query: 415  PSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKRE 474
                 D   Y  MI GL RS +  EA+   +E+ + G+ P++  YN +I     + M  E
Sbjct: 994  AGLDPDLVAYNLMINGLGRSQRTEEALSLFHEMQNRGIVPDLYTYNSLILNLGIVGMIEE 1053

Query: 475  AYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
            A +I  E++  GL P+  T+  L + +   GN
Sbjct: 1054 AGKIYEELQFIGLKPNVFTYNALIRGYTLSGN 1085



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 138/512 (26%), Positives = 233/512 (45%), Gaps = 20/512 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D+      + +  K++ +M++ G+ P+VV++T L++  C+ G ++ A+ + D MR  GV
Sbjct: 341 LDKFSDCGHLDKVEKIWTEMEADGYAPDVVTFTILVNALCKAGRINEAFDLLDTMRKQGV 400

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFAN--LVDSLCREG 118
           LPN  TY+ L+ G+LR   ++ A      L+  M   E L V   A+    L+D   + G
Sbjct: 401 LPNLHTYNTLISGLLRANRLDDA----LDLFSNM---ESLGVEPTAYTYILLIDYHGKSG 453

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
           +  +     E M          AC   + SL   GR   A  +   ++  GL P  V+YN
Sbjct: 454 HPGKALETFEKMKARGIAPNIVACNASLYSLAEMGRLGEAKAMFNELKSSGLAPDSVTYN 513

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
            ++    K G    A +LL E  +    P       L++ L     +E+A ++   M   
Sbjct: 514 MMMKCYSKVGQVDEAIKLLSEMSKVQCEPDVIVINSLIDTLYKAGRVEEAWQMFCRMEEM 573

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
                    NI L  L       + + +   M    C P+ IT NT+++  CK   ++ A
Sbjct: 574 NLAPTVVTYNILLAGLGKEGQIQKAVQLFESMNGHGCSPNTITFNTLLDCLCKNDEVDLA 633

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
           LK+   M     C PD +TF TII G +   +I+ A+ L +Q+  ++   P  VT   +L
Sbjct: 634 LKMFYKMTTMN-CRPDVLTFNTIIHGFIKQNQIKNAIWLFHQM--KKLLRPDHVTLCTLL 690

Query: 359 RGLFRLRRVEEAKEVF-NCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 417
            G+ +  ++E+A  +  +    +G   D + +  V+ G+      ++A  F + +V  + 
Sbjct: 691 PGVIKSGQIEDAFRITEDFFYQVGSNIDRSFWEDVMGGILTEAGTEKAILFGERLVCRAI 750

Query: 418 IHDNYVYAAMIKGLCRSGKIHEA----VHFLYELVDSGVTPNIVCYNVVIDGACKLSMKR 473
             D+ V   +IK LC+  K   A    V F  EL   GV P +  YN++IDG  ++    
Sbjct: 751 CKDDSVLIPIIKVLCKHKKTSVARNVFVKFTKEL---GVKPTLKVYNLLIDGFLEVHNVE 807

Query: 474 EAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
            A+ +  EM+  G  PD  T+  L   HG  G
Sbjct: 808 VAWNLFEEMKSAGCAPDTFTYNSLIDAHGKSG 839



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 130/566 (22%), Positives = 248/566 (43%), Gaps = 78/566 (13%)

Query: 3    QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
             L  + R+GEA  +F ++KS G  P+ V+Y  ++  Y + G++D A K+  EM      P
Sbjct: 483  SLAEMGRLGEAKAMFNELKSSGLAPDSVTYNMMMKCYSKVGQVDEAIKLLSEMSKVQCEP 542

Query: 63   NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
            + +  + L+  + +   VE A    ++++ RM EE +L+     +  L+  L +EG + +
Sbjct: 543  DVIVINSLIDTLYKAGRVEEA----WQMFCRM-EEMNLAPTVVTYNILLAGLGKEGQIQK 597

Query: 123  VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
              ++ E M              ++D LC++     A ++ Y M      P ++++N+I+H
Sbjct: 598  AVQLFESMNGHGCSPNTITFNTLLDCLCKNDEVDLALKMFYKMTTMNCRPDVLTFNTIIH 657

Query: 183  ----------------------------------GLCKHGGCMRAYQLLE---------- 198
                                              G+ K G    A+++ E          
Sbjct: 658  GFIKQNQIKNAIWLFHQMKKLLRPDHVTLCTLLPGVIKSGQIEDAFRITEDFFYQVGSNI 717

Query: 199  -----EGIQFGYLPSEHTYKVLVEG---------------------LCGESDLEKARKVL 232
                 E +  G L    T K ++ G                     LC       AR V 
Sbjct: 718  DRSFWEDVMGGILTEAGTEKAILFGERLVCRAICKDDSVLIPIIKVLCKHKKTSVARNVF 777

Query: 233  QFMLSKKDVDRT-RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK 291
                 +  V  T ++ N+ +     + N     N+   M    C PD  T N++I+   K
Sbjct: 778  VKFTKELGVKPTLKVYNLLIDGFLEVHNVEVAWNLFEEMKSAGCAPDTFTYNSLIDAHGK 837

Query: 292  MGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGI 351
             G+I E   + ++M+  + C P+ +T+  +I  L+   R+ +A++L Y ++    +SP  
Sbjct: 838  SGKINELFDLYDEMLT-RGCKPNTITYNMVISNLVKSNRLDKAMDLYYNLV-SGDFSPTP 895

Query: 352  VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDD 411
             T+  ++ GL +  R+++A E+F+ M+  G   +S  Y I+++G  +   +D A  F+  
Sbjct: 896  CTFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGYGKLGHVDTACEFFKR 955

Query: 412  IVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSM 471
            +V      D   Y  ++  LC +G++ +A+H+  +L  +G+ P++V YN++I+G  +   
Sbjct: 956  MVKEGIRPDLKSYTILVDILCIAGRVDDALHYFEKLKQAGLDPDLVAYNLMINGLGRSQR 1015

Query: 472  KREAYQILREMRKNGLNPDAVTWRIL 497
              EA  +  EM+  G+ PD  T+  L
Sbjct: 1016 TEEALSLFHEMQNRGIVPDLYTYNSL 1041



 Score =  157 bits (398), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 114/488 (23%), Positives = 226/488 (46%), Gaps = 44/488 (9%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           ++ EA+++   M   G  P+VV+YT LI   C   ++D A  +F +M+     P+ +TY 
Sbjct: 279 KIDEAYRIMKRMDDDGCGPDVVTYTVLIDALCTARKLDDAMCLFTKMKSSSHKPDKVTYV 338

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
            L+        +++      K+W  M E +  + +   F  LV++LC+ G +NE F + +
Sbjct: 339 TLLDKFSDCGHLDKVE----KIWTEM-EADGYAPDVVTFTILVNALCKAGRINEAFDLLD 393

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
                                               MRK+G+ P+L +YN+++ GL +  
Sbjct: 394 -----------------------------------TMRKQGVLPNLHTYNTLISGLLRAN 418

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
               A  L       G  P+ +TY +L++         KA +  + M ++        CN
Sbjct: 419 RLDDALDLFSNMESLGVEPTAYTYILLIDYHGKSGHPGKALETFEKMKARGIAPNIVACN 478

Query: 249 IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 308
             L +L  +    E   +   +  +   PD +T N ++  + K+G+++EA+K+L++M   
Sbjct: 479 ASLYSLAEMGRLGEAKAMFNELKSSGLAPDSVTYNMMMKCYSKVGQVDEAIKLLSEMSKV 538

Query: 309 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE 368
           + C PD +   ++I  L   GR++EA  +  + M +   +P +VTYN +L GL +  +++
Sbjct: 539 Q-CEPDVIVINSLIDTLYKAGRVEEAWQMFCR-MEEMNLAPTVVTYNILLAGLGKEGQIQ 596

Query: 369 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI 428
           +A ++F  M G G   ++ T+  ++D LC+++++D A + +  +   +   D   +  +I
Sbjct: 597 KAVQLFESMNGHGCSPNTITFNTLLDCLCKNDEVDLALKMFYKMTTMNCRPDVLTFNTII 656

Query: 429 KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE-MRKNGL 487
            G  +  +I  A+ +L+  +   + P+ V    ++ G  K     +A++I  +   + G 
Sbjct: 657 HGFIKQNQIKNAI-WLFHQMKKLLRPDHVTLCTLLPGVIKSGQIEDAFRITEDFFYQVGS 715

Query: 488 NPDAVTWR 495
           N D   W 
Sbjct: 716 NIDRSFWE 723



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 111/484 (22%), Positives = 228/484 (47%), Gaps = 12/484 (2%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           EA +++  M S G  P++ +++ L+    +   +     + +EM   G+ PN  TY++ +
Sbjct: 212 EALEVYRRMVSEGLKPSLKTFSALMVASGKRRNIKTVMGLLEEMESMGLRPNIYTYTICI 271

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP 131
           R + R   ++ A    +++ +RM +++    +   +  L+D+LC    +++   +   M 
Sbjct: 272 RVLGRDGKIDEA----YRIMKRM-DDDGCGPDVVTYTVLIDALCTARKLDDAMCLFTKMK 326

Query: 132 QGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCM 191
                 ++     ++D     G      ++   M   G  P +V++  +V+ LCK G   
Sbjct: 327 SSSHKPDKVTYVTLLDKFSDCGHLDKVEKIWTEMEADGYAPDVVTFTILVNALCKAGRIN 386

Query: 192 RAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM--LSKKDVDRTRICNI 249
            A+ LL+   + G LP+ HTY  L+ GL   + L+ A  +   M  L  +    T I  I
Sbjct: 387 EAFDLLDTMRKQGVLPNLHTYNTLISGLLRANRLDDALDLFSNMESLGVEPTAYTYILLI 446

Query: 250 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK 309
                    +P + L     M      P+++  N  +    +MGR+ EA  + N++ +  
Sbjct: 447 DYHGKS--GHPGKALETFEKMKARGIAPNIVACNASLYSLAEMGRLGEAKAMFNELKSSG 504

Query: 310 FCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEE 369
             APD+VT+  ++     VG++ EA+ LL + M +    P ++  N+++  L++  RVEE
Sbjct: 505 L-APDSVTYNMMMKCYSKVGQVDEAIKLLSE-MSKVQCEPDVIVINSLIDTLYKAGRVEE 562

Query: 370 AKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIK 429
           A ++F  M  + +     TY I++ GL +  Q+ +A + ++ +       +   +  ++ 
Sbjct: 563 AWQMFCRMEEMNLAPTVVTYNILLAGLGKEGQIQKAVQLFESMNGHGCSPNTITFNTLLD 622

Query: 430 GLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNP 489
            LC++ ++  A+   Y++      P+++ +N +I G  K +  + A  +  +M+K  L P
Sbjct: 623 CLCKNDEVDLALKMFYKMTTMNCRPDVLTFNTIIHGFIKQNQIKNAIWLFHQMKKL-LRP 681

Query: 490 DAVT 493
           D VT
Sbjct: 682 DHVT 685



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 119/486 (24%), Positives = 212/486 (43%), Gaps = 38/486 (7%)

Query: 55  MRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSL 114
            +  G LPN +  +     +L    V R    M  +++ M + + +  N   +  +  SL
Sbjct: 111 FKSVGELPNVVHTTETCNHMLEILRVHRRVEDMAFVFDLM-QRQIIRRNVDTYLIIFKSL 169

Query: 115 CREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSL 174
              G + +     E M +   V   ++   +I  L +SG    A  V   M   GL PSL
Sbjct: 170 FIRGGLRQAPSALEKMREAGFVLNAYSYNGLIHFLLQSGFCKEALEVYRRMVSEGLKPSL 229

Query: 175 VSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQF 234
            ++++++    K         LLEE    G  P+ +TY + +  L  +  +++A ++++ 
Sbjct: 230 KTFSALMVASGKRRNIKTVMGLLEEMESMGLRPNIYTYTICIRVLGRDGKIDEAYRIMKR 289

Query: 235 MLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGR 294
           M             + + ALC  +   + + +   M  +  +PD +T  T+++ F   G 
Sbjct: 290 MDDDGCGPDVVTYTVLIDALCTARKLDDAMCLFTKMKSSSHKPDKVTYVTLLDKFSDCGH 349

Query: 295 IEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTY 354
           +++  K+  +M A  + APD VTFT ++  L   GRI EA +LL   M ++G  P + TY
Sbjct: 350 LDKVEKIWTEMEADGY-APDVVTFTILVNALCKAGRINEAFDLL-DTMRKQGVLPNLHTY 407

Query: 355 NAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVID-------------------- 394
           N ++ GL R  R+++A ++F+ M  +GV   + TY ++ID                    
Sbjct: 408 NTLISGLLRANRLDDALDLFSNMESLGVEPTAYTYILLIDYHGKSGHPGKALETFEKMKA 467

Query: 395 ---------------GLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
                           L E  +L EAK  ++++       D+  Y  M+K   + G++ E
Sbjct: 468 RGIAPNIVACNASLYSLAEMGRLGEAKAMFNELKSSGLAPDSVTYNMMMKCYSKVGQVDE 527

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
           A+  L E+      P+++  N +ID   K     EA+Q+   M +  L P  VT+ IL  
Sbjct: 528 AIKLLSEMSKVQCEPDVIVINSLIDTLYKAGRVEEAWQMFCRMEEMNLAPTVVTYNILLA 587

Query: 500 LHGNRG 505
             G  G
Sbjct: 588 GLGKEG 593



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 89/357 (24%), Positives = 167/357 (46%), Gaps = 8/357 (2%)

Query: 35   LIHGYCRTGEMDVAYKVFDEM-RHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWER 93
            +I   C+  +  VA  VF +  +  GV P    Y++L+ G L   +VE A    + L+E 
Sbjct: 760  IIKVLCKHKKTSVARNVFVKFTKELGVKPTLKVYNLLIDGFLEVHNVEVA----WNLFEE 815

Query: 94   MKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSG 153
            MK     + +   + +L+D+  + G +NE+F + ++M              +I +L +S 
Sbjct: 816  MKSA-GCAPDTFTYNSLIDAHGKSGKINELFDLYDEMLTRGCKPNTITYNMVISNLVKSN 874

Query: 154  RNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYK 213
            R   A  + Y +     +P+  ++  ++ GL K G    A+++ +  + +G  P+   Y 
Sbjct: 875  RLDKAMDLYYNLVSGDFSPTPCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYN 934

Query: 214  VLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQT 273
            +LV G      ++ A +  + M+ +      +   I +  LC+     + L+    + Q 
Sbjct: 935  ILVNGYGKLGHVDTACEFFKRMVKEGIRPDLKSYTILVDILCIAGRVDDALHYFEKLKQA 994

Query: 274  QCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQE 333
               PD++  N +ING  +  R EEAL + ++M   +   PD  T+ ++I  L  VG I+E
Sbjct: 995  GLDPDLVAYNLMINGLGRSQRTEEALSLFHEM-QNRGIVPDLYTYNSLILNLGIVGMIEE 1053

Query: 334  ALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYA 390
            A   +Y+ +   G  P + TYNA++RG       E A  ++  M+  G   ++ T+A
Sbjct: 1054 A-GKIYEELQFIGLKPNVFTYNALIRGYTLSGNSELAYGIYKKMMVGGCDPNTGTFA 1109



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 87/383 (22%), Positives = 164/383 (42%), Gaps = 39/383 (10%)

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           F+   ++P      E   C HM++ L    R    + V  +M+++ +  ++ +Y  I   
Sbjct: 111 FKSVGELPNVVHTTE--TCNHMLEILRVHRRVEDMAFVFDLMQRQIIRRNVDTYLIIFKS 168

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           L   GG  +A   LE+  + G++ + ++Y  L+                 F+L      +
Sbjct: 169 LFIRGGLRQAPSALEKMREAGFVLNAYSYNGLI----------------HFLL------Q 206

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
           +  C              E L V   M+    +P + T + ++    K   I+  + +L 
Sbjct: 207 SGFCK-------------EALEVYRRMVSEGLKPSLKTFSALMVASGKRRNIKTVMGLLE 253

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           +M +     P+  T+T  I  L   G+I EA  ++ + M   G  P +VTY  ++  L  
Sbjct: 254 EMESMGL-RPNIYTYTICIRVLGRDGKIDEAYRIMKR-MDDDGCGPDVVTYTVLIDALCT 311

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
            R++++A  +F  M       D  TY  ++D   +   LD+ ++ W ++       D   
Sbjct: 312 ARKLDDAMCLFTKMKSSSHKPDKVTYVTLLDKFSDCGHLDKVEKIWTEMEADGYAPDVVT 371

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           +  ++  LC++G+I+EA   L  +   GV PN+  YN +I G  + +   +A  +   M 
Sbjct: 372 FTILVNALCKAGRINEAFDLLDTMRKQGVLPNLHTYNTLISGLLRANRLDDALDLFSNME 431

Query: 484 KNGLNPDAVTWRILDKLHGNRGN 506
             G+ P A T+ +L   HG  G+
Sbjct: 432 SLGVEPTAYTYILLIDYHGKSGH 454



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 37/61 (60%)

Query: 10   VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSV 69
            + EA K++ +++  G  PNV +Y  LI GY  +G  ++AY ++ +M   G  PN+ T++ 
Sbjct: 1051 IEEAGKIYEELQFIGLKPNVFTYNALIRGYTLSGNSELAYGIYKKMMVGGCDPNTGTFAQ 1110

Query: 70   L 70
            L
Sbjct: 1111 L 1111


>gi|413950074|gb|AFW82723.1| hypothetical protein ZEAMMB73_503137 [Zea mays]
          Length = 643

 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 123/493 (24%), Positives = 227/493 (46%), Gaps = 12/493 (2%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           CG + VG    ++ +M+  G  PNV +Y  L+   C+   +  A K+ DEM   G  P+ 
Sbjct: 135 CGENMVGAVVLVYDNMRKDGVHPNVFTYNLLVRALCQNNRVGAARKMLDEMARKGCPPDD 194

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           +TY+ +V  + +   ++ A  ++            +    A++  +V +LCRE  + EVF
Sbjct: 195 VTYATIVSVLCKLDRLDEATEVL----------AAMPPVAASYNAIVLALCREFRMQEVF 244

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
            +  DM              ++D+ C++G    A  ++  M   G TP++V++ ++V GL
Sbjct: 245 SVVSDMVGRGLQPNVITYTTIVDAFCKAGELRMACAILARMVITGCTPNVVTFTALVRGL 304

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
              G    A  +    +  G+ PS  +Y +L+ GLC   DL+ A  +L  M         
Sbjct: 305 FDDGRVHDALDMWRWMVAEGWAPSTVSYNILIRGLCSVGDLKGASSILNSMEQHGCFPNV 364

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
           R  +  +       +    +++   M ++ C+P+V+    +++ FCK     +A  +++ 
Sbjct: 365 RTYSTLIDGFSKAGDLGGAISIWNDMSRSGCKPNVVVYTNMVDVFCKKLMFNQAKSLIDK 424

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
           M+  + C P+ VTF T+I  L +  R+  AL + ++ M + G  P   TYN ++ GLFR 
Sbjct: 425 MLL-ENCPPNTVTFNTLIRSLCDCRRVGRALGVFHE-MRRHGCVPNGRTYNELIHGLFRE 482

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY 424
               +A  +   M   G+     TY  V+ GLC++    EA  F   ++      + + +
Sbjct: 483 GNCGDALHMVTEMQSHGIELSLVTYNTVVSGLCQTRMSREAMVFVGKMIVQGIQPNAFTF 542

Query: 425 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484
           +A+I   C+ G++  A   L  +       NI+ Y +++   C      +A   L +M  
Sbjct: 543 SAIIHAYCKEGEVRMAAWMLGAMNVVNCHRNILVYTILMAELCNQDKLVDAMTYLLKMLY 602

Query: 485 NGLNPDAVTWRIL 497
            G+ P+ VTW +L
Sbjct: 603 EGIYPNTVTWNVL 615



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 102/445 (22%), Positives = 190/445 (42%), Gaps = 42/445 (9%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R+ E   +  DM  RG  PNV++YTT++  +C+ GE+ +A  +   M   G  PN
Sbjct: 234 LCREFRMQEVFSVVSDMVGRGLQPNVITYTTIVDAFCKAGELRMACAILARMVITGCTPN 293

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +T++ LVRG+     V  A      +W  M                      EG+    
Sbjct: 294 VVTFTALVRGLFDDGRVHDA----LDMWRWMVA--------------------EGWA--- 326

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
                  P   S N       +I  LC  G   GAS ++  M + G  P++ +Y++++ G
Sbjct: 327 -------PSTVSYNI------LIRGLCSVGDLKGASSILNSMEQHGCFPNVRTYSTLIDG 373

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
             K G    A  +  +  + G  P+   Y  +V+  C +    +A+ ++  ML +     
Sbjct: 374 FSKAGDLGGAISIWNDMSRSGCKPNVVVYTNMVDVFCKKLMFNQAKSLIDKMLLENCPPN 433

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
           T   N  +R+LC  +     L V   M +  C P+  T N +I+G  + G   +AL ++ 
Sbjct: 434 TVTFNTLIRSLCDCRRVGRALGVFHEMRRHGCVPNGRTYNELIHGLFREGNCGDALHMVT 493

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           +M +        VT+ T++ GL      +EA+  + +++ Q G  P   T++A++    +
Sbjct: 494 EMQSHGI-ELSLVTYNTVVSGLCQTRMSREAMVFVGKMIVQ-GIQPNAFTFSAIIHAYCK 551

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
              V  A  +   M  +    +   Y I++  LC  ++L +A  +   +++     +   
Sbjct: 552 EGEVRMAAWMLGAMNVVNCHRNILVYTILMAELCNQDKLVDAMTYLLKMLYEGIYPNTVT 611

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELV 448
           +  +++G+ R+    E   F+  + 
Sbjct: 612 WNVLVRGVFRNLGCIEPSDFIQHIT 636



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 85/363 (23%), Positives = 164/363 (45%), Gaps = 7/363 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C    +  A  +   M   G  PNVV++T L+ G    G +  A  ++  M   G 
Sbjct: 266 VDAFCKAGELRMACAILARMVITGCTPNVVTFTALVRGLFDDGRVHDALDMWRWMVAEGW 325

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P++++Y++L+RG+    D++ A+ ++  +     E+     N   ++ L+D   + G +
Sbjct: 326 APSTVSYNILIRGLCSVGDLKGASSILNSM-----EQHGCFPNVRTYSTLIDGFSKAGDL 380

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                I  DM +           +M+D  C+    + A  ++  M      P+ V++N++
Sbjct: 381 GGAISIWNDMSRSGCKPNVVVYTNMVDVFCKKLMFNQAKSLIDKMLLENCPPNTVTFNTL 440

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +  LC      RA  +  E  + G +P+  TY  L+ GL  E +   A  ++  M S   
Sbjct: 441 IRSLCDCRRVGRALGVFHEMRRHGCVPNGRTYNELIHGLFREGNCGDALHMVTEMQSHGI 500

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                  N  +  LC  +   E +  +  M+    QP+  T + +I+ +CK G +  A  
Sbjct: 501 ELSLVTYNTVVSGLCQTRMSREAMVFVGKMIVQGIQPNAFTFSAIIHAYCKEGEVRMAAW 560

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +L  M     C  + + +T ++  L N  ++ +A+  L +++ + G  P  VT+N ++RG
Sbjct: 561 MLGAMNVVN-CHRNILVYTILMAELCNQDKLVDAMTYLLKMLYE-GIYPNTVTWNVLVRG 618

Query: 361 LFR 363
           +FR
Sbjct: 619 VFR 621


>gi|449527621|ref|XP_004170808.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g13630-like [Cucumis
           sativus]
          Length = 830

 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 138/547 (25%), Positives = 245/547 (44%), Gaps = 47/547 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M + C +  +  A   F  M   G + +  SY  L+HG C  G MD A    D+M   GV
Sbjct: 278 MSKFCKVGLIDVARSXFCLMVKNGLLHDSFSYNILLHGLCVAGSMDEALGFTDDMEKHGV 337

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TY+ L +G L    +  A  ++ K+       + L+ +   +  L+   C+ G +
Sbjct: 338 EPDVVTYNTLAKGFLLLGLMSGARKVVQKMLL-----QGLNPDLVTYTTLICGHCQMGNI 392

Query: 121 NEVFRI-AEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
            E  ++  E + +G  +N  F    ++  LC+ GR   A  +   M    L P  + Y+ 
Sbjct: 393 EEALKLRQETLSRGFKLNVIFY-NMLLSCLCKVGRIEEALTLFDEMETLRLEPDFIVYSI 451

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++HGLCK G   RAYQL E+       P     + ++ GL    ++ +AR          
Sbjct: 452 LIHGLCKEGFVQRAYQLYEQMRLKRKFPHHFAQRAVLLGLFKNGNISEARNYFDTWTRMD 511

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
            ++   + NI +     +    E + +   M++    P V+T NT+INGFC+ G + EA 
Sbjct: 512 LMEDVVLYNIMIDGYVRLDGIAEAMQLYYKMIERGITPSVVTFNTLINGFCRRGDLMEAR 571

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           K+L +++  K   P  VT+TT++     VG +QE  + L++ M      P  VTY  +++
Sbjct: 572 KML-EVIRLKGLVPSVVTYTTLMNAYCEVGNMQEMFHFLHE-MEANAVVPTHVTYTVLIK 629

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVW----P 415
           GL R  ++ E+ ++   M   G++ DS TY  +I   C+  ++ +A + ++ ++     P
Sbjct: 630 GLCRQNKMHESLQLLEYMYAKGLLPDSVTYNTIIQCFCKGKEITKALQLYNMMLLHNCDP 689

Query: 416 S-------------------------NIHDNYV------YAAMIKGLCRSGKIHEAVHFL 444
           +                         +I D  +      Y  +IK  C  G++ +A+ + 
Sbjct: 690 TQVTYKVLINALCIFGDLKDVDRMVVSIEDRNITLKKXTYMTIIKAHCAKGQVSKALGYF 749

Query: 445 YELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA-VTWRILDKLH-- 501
            +++  G   +I  Y+ VI+  CK  +  EA      M   G+ PD  +   +L+  H  
Sbjct: 750 NQMLAKGFVISIRDYSAVINRLCKRGLITEAKYFFVMMLSEGVTPDPEICKTVLNAFHQQ 809

Query: 502 GNRGNDF 508
           GN  + F
Sbjct: 810 GNNSSVF 816



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 125/475 (26%), Positives = 219/475 (46%), Gaps = 7/475 (1%)

Query: 13  AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVR 72
           A K+   M  +G  P++V+YTTLI G+C+ G ++ A K+  E    G   N + Y++L+ 
Sbjct: 360 ARKVVQKMLLQGLNPDLVTYTTLICGHCQMGNIEEALKLRQETLSRGFKLNVIFYNMLLS 419

Query: 73  GVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQ 132
            + +   +E A + +F   E ++ E D  V    ++ L+  LC+EG+V   +++ E M  
Sbjct: 420 CLCKVGRIEEA-LTLFDEMETLRLEPDFIV----YSILIHGLCKEGFVQRAYQLYEQMRL 474

Query: 133 GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMR 192
            +     FA   ++  L ++G    A        +  L   +V YN ++ G  +  G   
Sbjct: 475 KRKFPHHFAQRAVLLGLFKNGNISEARNYFDTWTRMDLMEDVVLYNIMIDGYVRLDGIAE 534

Query: 193 AYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLR 252
           A QL  + I+ G  PS  T+  L+ G C   DL +ARK+L+ +  K  V         + 
Sbjct: 535 AMQLYYKMIERGITPSVVTFNTLINGFCRRGDLMEARKMLEVIRLKGLVPSVVTYTTLMN 594

Query: 253 ALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCA 312
           A C + N  E+ + L  M      P  +T   +I G C+  ++ E+L++L  M A K   
Sbjct: 595 AYCEVGNMQEMFHFLHEMEANAVVPTHVTYTVLIKGLCRQNKMHESLQLLEYMYA-KGLL 653

Query: 313 PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKE 372
           PD+VT+ TII        I +AL L Y +M      P  VTY  ++  L     +++   
Sbjct: 654 PDSVTYNTIIQCFCKGKEITKALQL-YNMMLLHNCDPTQVTYKVLINALCIFGDLKDVDR 712

Query: 373 VFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLC 432
           +   +    +     TY  +I   C   Q+ +A  +++ ++    +     Y+A+I  LC
Sbjct: 713 MVVSIEDRNITLKKXTYMTIIKAHCAKGQVSKALGYFNQMLAKGFVISIRDYSAVINRLC 772

Query: 433 RSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
           + G I EA +F   ++  GVTP+      V++   +       ++ L  + K+G 
Sbjct: 773 KRGLITEAKYFFVMMLSEGVTPDPEICKTVLNAFHQQGNNSSVFEFLAMVVKSGF 827



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 121/447 (27%), Positives = 211/447 (47%), Gaps = 7/447 (1%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C +  + EA KL  +  SRG   NV+ Y  L+   C+ G ++ A  +FDEM    + P+ 
Sbjct: 387 CQMGNIEEALKLRQETLSRGFKLNVIFYNMLLSCLCKVGRIEEALTLFDEMETLRLEPDF 446

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           + YS+L+ G+ +   V+RA    ++L+E+M+ +     + A  A L+  L + G ++E  
Sbjct: 447 IVYSILIHGLCKEGFVQRA----YQLYEQMRLKRKFPHHFAQRAVLL-GLFKNGNISEAR 501

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
              +   +   + +      MID   R      A ++ Y M +RG+TPS+V++N++++G 
Sbjct: 502 NYFDTWTRMDLMEDVVLYNIMIDGYVRLDGIAEAMQLYYKMIERGITPSVVTFNTLINGF 561

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
           C+ G  M A ++LE     G +PS  TY  L+   C   ++++    L  M +   V   
Sbjct: 562 CRRGDLMEARKMLEVIRLKGLVPSVVTYTTLMNAYCEVGNMQEMFHFLHEMEANAVVPTH 621

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
               + ++ LC      E L +L +M      PD +T NT+I  FCK   I +AL++ N 
Sbjct: 622 VTYTVLIKGLCRQNKMHESLQLLEYMYAKGLLPDSVTYNTIIQCFCKGKEITKALQLYNM 681

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
           M+    C P  VT+  +I  L   G +++   ++  +   R  +    TY  +++     
Sbjct: 682 MLLHN-CDPTQVTYKVLINALCIFGDLKDVDRMVVSI-EDRNITLKKXTYMTIIKAHCAK 739

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY 424
            +V +A   FN ML  G V     Y+ VI+ LC+   + EAK F+  ++      D  + 
Sbjct: 740 GQVSKALGYFNQMLAKGFVISIRDYSAVINRLCKRGLITEAKYFFVMMLSEGVTPDPEIC 799

Query: 425 AAMIKGLCRSGKIHEAVHFLYELVDSG 451
             ++    + G       FL  +V SG
Sbjct: 800 KTVLNAFHQQGNNSSVFEFLAMVVKSG 826



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 124/513 (24%), Positives = 225/513 (43%), Gaps = 46/513 (8%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           MK      +V +Y +L+H    T   D+ + V++E++  G   +  T S+L+ G+     
Sbjct: 196 MKDLNFQASVPTYNSLLHNMRHT---DIMWDVYNEIKVSGAPQSECTTSILIHGLCEQSK 252

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
           +E A +       ++     +S+N      ++   C+ G ++        M +   +++ 
Sbjct: 253 LEDA-ISFLHDSNKVVGPSIVSINT-----IMSKFCKVGLIDVARSXFCLMVKNGLLHDS 306

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
           F+   ++  LC +G    A      M K G+ P +V+YN++  G    G    A +++++
Sbjct: 307 FSYNILLHGLCVAGSMDEALGFTDDMEKHGVEPDVVTYNTLAKGFLLLGLMSGARKVVQK 366

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
            +  G  P   TY  L+ G C   ++E+A K+ Q  LS+         N+ L  LC +  
Sbjct: 367 MLLQGLNPDLVTYTTLICGHCQMGNIEEALKLRQETLSRGFKLNVIFYNMLLSCLCKVGR 426

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM-VAGKFCAPDAVTF 318
             E L +   M   + +PD I  + +I+G CK G ++ A ++   M +  KF  P     
Sbjct: 427 IEEALTLFDEMETLRLEPDFIVYSILIHGLCKEGFVQRAYQLYEQMRLKRKF--PHHFAQ 484

Query: 319 TTIIFGLLNVGRIQEALNL----------------------------------LYQVMPQ 344
             ++ GL   G I EA N                                   LY  M +
Sbjct: 485 RAVLLGLFKNGNISEARNYFDTWTRMDLMEDVVLYNIMIDGYVRLDGIAEAMQLYYKMIE 544

Query: 345 RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 404
           RG +P +VT+N ++ G  R   + EA+++   +   G+V    TY  +++  CE   + E
Sbjct: 545 RGITPSVVTFNTLINGFCRRGDLMEARKMLEVIRLKGLVPSVVTYTTLMNAYCEVGNMQE 604

Query: 405 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
              F  ++   + +  +  Y  +IKGLCR  K+HE++  L  +   G+ P+ V YN +I 
Sbjct: 605 MFHFLHEMEANAVVPTHVTYTVLIKGLCRQNKMHESLQLLEYMYAKGLLPDSVTYNTIIQ 664

Query: 465 GACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
             CK     +A Q+   M  +  +P  VT+++L
Sbjct: 665 CFCKGKEITKALQLYNMMLLHNCDPTQVTYKVL 697



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 118/420 (28%), Positives = 188/420 (44%), Gaps = 74/420 (17%)

Query: 156 HGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVL 215
           H A  V+  M+      S+ +YNS++H + +H   M  + +  E    G   SE T  +L
Sbjct: 187 HDALFVIAKMKDLNFQASVPTYNSLLHNM-RHTDIM--WDVYNEIKVSGAPQSECTTSIL 243

Query: 216 VEGLCGESDLEKARKVLQ--------------FMLSK------KDVDRTRIC-------- 247
           + GLC +S LE A   L                ++SK       DV R+  C        
Sbjct: 244 IHGLCEQSKLEDAISFLHDSNKVVGPSIVSINTIMSKFCKVGLIDVARSXFCLMVKNGLL 303

Query: 248 ------NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
                 NI L  LC+  +  E L     M +   +PDV+T NT+  GF  +G +  A KV
Sbjct: 304 HDSFSYNILLHGLCVAGSMDEALGFTDDMEKHGVEPDVVTYNTLAKGFLLLGLMSGARKV 363

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
           +  M+      PD VT+TT+I G   +G I+EAL L  + +  RG+   ++ YN +L  L
Sbjct: 364 VQKMLLQGL-NPDLVTYTTLICGHCQMGNIEEALKLRQETL-SRGFKLNVIFYNMLLSCL 421

Query: 362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE----------------------- 398
            ++ R+EEA  +F+ M  + +  D   Y+I+I GLC+                       
Sbjct: 422 CKVGRIEEALTLFDEMETLRLEPDFIVYSILIHGLCKEGFVQRAYQLYEQMRLKRKFPHH 481

Query: 399 ------------SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE 446
                       +  + EA+ ++D       + D  +Y  MI G  R   I EA+   Y+
Sbjct: 482 FAQRAVLLGLFKNGNISEARNYFDTWTRMDLMEDVVLYNIMIDGYVRLDGIAEAMQLYYK 541

Query: 447 LVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           +++ G+TP++V +N +I+G C+     EA ++L  +R  GL P  VT+  L   +   GN
Sbjct: 542 MIERGITPSVVTFNTLINGFCRRGDLMEARKMLEVIRLKGLVPSVVTYTTLMNAYCEVGN 601



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/236 (19%), Positives = 101/236 (42%), Gaps = 30/236 (12%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M+  C +  + E      +M++   VP  V+YT LI G CR  +M  + ++ + M   G+
Sbjct: 593 MNAYCEVGNMQEMFHFLHEMEANAVVPTHVTYTVLIKGLCRQNKMHESLQLLEYMYAKGL 652

Query: 61  LPNSLTYSVLVRGVLRTRDVERA----NVLMF-----------------------KLWER 93
           LP+S+TY+ +++   + +++ +A    N+++                        K  +R
Sbjct: 653 LPDSVTYNTIIQCFCKGKEITKALQLYNMMLLHNCDPTQVTYKVLINALCIFGDLKDVDR 712

Query: 94  MK---EEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC 150
           M    E+ ++++    +  ++ + C +G V++       M     V        +I+ LC
Sbjct: 713 MVVSIEDRNITLKKXTYMTIIKAHCAKGQVSKALGYFNQMLAKGFVISIRDYSAVINRLC 772

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL 206
           + G    A     +M   G+TP      ++++   + G     ++ L   ++ G++
Sbjct: 773 KRGLITEAKYFFVMMLSEGVTPDPEICKTVLNAFHQQGNNSSVFEFLAMVVKSGFI 828


>gi|242069901|ref|XP_002450227.1| hypothetical protein SORBIDRAFT_05g002210 [Sorghum bicolor]
 gi|241936070|gb|EES09215.1| hypothetical protein SORBIDRAFT_05g002210 [Sorghum bicolor]
          Length = 894

 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 116/369 (31%), Positives = 186/369 (50%), Gaps = 2/369 (0%)

Query: 138 EEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLL 197
           ++++   M+  LC  GR     R++      G  P  V YN ++ G C+ G   R   LL
Sbjct: 275 DDYSTCVMVRGLCLEGRVEEGRRLIEARWGEGCVPGAVFYNVLIDGYCRRGDVGRGLLLL 334

Query: 198 EEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLI 257
            E    G +P+  TY  ++  L  +SDL K   +L  M  +      +I N  + ALC  
Sbjct: 335 GEMEMKGIMPTVVTYGAIIHWLGRKSDLTKIESLLWEMKERGLSPNVQIYNTVIYALCKC 394

Query: 258 KNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVT 317
           ++ ++ L VL  M+ ++  PDV+T NT+I  FC+ G +EEALK+L + +  +   P+ ++
Sbjct: 395 RSASQALAVLNQMVASRFDPDVVTFNTLIAAFCREGDVEEALKLLREAIRREL-EPNQLS 453

Query: 318 FTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCM 377
           +T +I G    G +  A +LL + M  RG++P +VT  A++ GL    +V+EA  V   M
Sbjct: 454 YTPLIHGFCVRGEVMVASDLLVE-MIGRGHTPDVVTLGALIHGLVVSGQVDEALMVREKM 512

Query: 378 LGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKI 437
               V+ D+  Y ++I GLC+   L  AK    +++      D +VY  +I G  RS K+
Sbjct: 513 AERQVMPDANIYNVLISGLCKKRMLSAAKNLLVEMLEQKVQPDKFVYTTLIDGFIRSDKL 572

Query: 438 HEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            +A      + + G   +IV YN +I G CK  M  EA   +  MRK G  PD  T+  L
Sbjct: 573 SDARKIFEFMEEKGGYRDIVAYNAMIKGYCKSGMMNEAVMCMSSMRKVGCIPDEFTYTTL 632

Query: 498 DKLHGNRGN 506
              +  +G+
Sbjct: 633 IDGYAKKGD 641



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 138/540 (25%), Positives = 239/540 (44%), Gaps = 55/540 (10%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   RV E  +L       G VP  V Y  LI GYCR G++     +  EM   G++P 
Sbjct: 286 LCLEGRVEEGRRLIEARWGEGCVPGAVFYNVLIDGYCRRGDVGRGLLLLGEMEMKGIMPT 345

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY  ++  + R  D+ +   L++++ ER      LS N   +  ++ +LC+    ++ 
Sbjct: 346 VVTYGAIIHWLGRKSDLTKIESLLWEMKER-----GLSPNVQIYNTVIYALCKCRSASQA 400

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             +   M   +   +      +I + CR G    A +++    +R L P+ +SY  ++HG
Sbjct: 401 LAVLNQMVASRFDPDVVTFNTLIAAFCREGDVEEALKLLREAIRRELEPNQLSYTPLIHG 460

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            C  G  M A  LL E I  G+ P   T   L+ GL     +++A  V + M  ++ +  
Sbjct: 461 FCVRGEVMVASDLLVEMIGRGHTPDVVTLGALIHGLVVSGQVDEALMVREKMAERQVMPD 520

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL- 302
             I N+ +  LC  +  +   N+LV ML+ + QPD     T+I+GF +  ++ +A K+  
Sbjct: 521 ANIYNVLISGLCKKRMLSAAKNLLVEMLEQKVQPDKFVYTTLIDGFIRSDKLSDARKIFE 580

Query: 303 --------------NDMVAGKF-------------------CAPDAVTFTTIIFGLLNVG 329
                         N M+ G                     C PD  T+TT+I G    G
Sbjct: 581 FMEEKGGYRDIVAYNAMIKGYCKSGMMNEAVMCMSSMRKVGCIPDEFTYTTLIDGYAKKG 640

Query: 330 RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTY 389
            I+ AL  L  +M +R   P IVTY +++ G   +   + A+ +F  M   G+  +   Y
Sbjct: 641 DIKAALRFLCDMMKRR-CKPNIVTYASLICGYCNIGNTDSAEVLFASMQSEGLFPNVVHY 699

Query: 390 AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL--CRSGKIH------EAV 441
            ++I  L + ++  +A  +++ ++      ++     ++ GL  CR G I+      +  
Sbjct: 700 TVLIGSLFKKDKAIQAAAYFEHMLLNHCSPNDATMHYLVNGLTNCRYGMINSNCSDTDQA 759

Query: 442 HFLYELVD-------SGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
           H    L+D        G+ P I  YN +I   C+ +M  +A ++  +M   G  PD VT+
Sbjct: 760 HKKSALLDVFKGLISDGLDPRISAYNAIIFSLCRHNMLGKAMELKEKMSNKGCLPDPVTF 819



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 115/430 (26%), Positives = 196/430 (45%), Gaps = 9/430 (2%)

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFAN-LVDSLCREGYVNEVFRIA 127
           V+VRG+     VE    L+   W       +  V  A F N L+D  CR G V     + 
Sbjct: 281 VMVRGLCLEGRVEEGRRLIEARWG------EGCVPGAVFYNVLIDGYCRRGDVGRGLLLL 334

Query: 128 EDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKH 187
            +M     +      G +I  L R         +++ M++RGL+P++  YN++++ LCK 
Sbjct: 335 GEMEMKGIMPTVVTYGAIIHWLGRKSDLTKIESLLWEMKERGLSPNVQIYNTVIYALCKC 394

Query: 188 GGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC 247
               +A  +L + +   + P   T+  L+   C E D+E+A K+L+  + ++        
Sbjct: 395 RSASQALAVLNQMVASRFDPDVVTFNTLIAAFCREGDVEEALKLLREAIRRELEPNQLSY 454

Query: 248 NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA 307
              +   C+        ++LV M+     PDV+TL  +I+G    G+++EAL V   M A
Sbjct: 455 TPLIHGFCVRGEVMVASDLLVEMIGRGHTPDVVTLGALIHGLVVSGQVDEALMVREKM-A 513

Query: 308 GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRV 367
            +   PDA  +  +I GL     +  A NLL +++ Q+   P    Y  ++ G  R  ++
Sbjct: 514 ERQVMPDANIYNVLISGLCKKRMLSAAKNLLVEMLEQK-VQPDKFVYTTLIDGFIRSDKL 572

Query: 368 EEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAM 427
            +A+++F  M   G   D   Y  +I G C+S  ++EA      +     I D + Y  +
Sbjct: 573 SDARKIFEFMEEKGGYRDIVAYNAMIKGYCKSGMMNEAVMCMSSMRKVGCIPDEFTYTTL 632

Query: 428 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
           I G  + G I  A+ FL +++     PNIV Y  +I G C +     A  +   M+  GL
Sbjct: 633 IDGYAKKGDIKAALRFLCDMMKRRCKPNIVTYASLICGYCNIGNTDSAEVLFASMQSEGL 692

Query: 488 NPDAVTWRIL 497
            P+ V + +L
Sbjct: 693 FPNVVHYTVL 702



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 118/479 (24%), Positives = 193/479 (40%), Gaps = 57/479 (11%)

Query: 8   SRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTY 67
           S + +   L ++MK RG  PNV  Y T+I+  C+      A  V ++M      P+ +T+
Sbjct: 360 SDLTKIESLLWEMKERGLSPNVQIYNTVIYALCKCRSASQALAVLNQMVASRFDPDVVTF 419

Query: 68  SVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIA 127
           + L+    R  DVE A  L+ +   R     +L  N  ++  L+   C  G V     + 
Sbjct: 420 NTLIAAFCREGDVEEALKLLREAIRR-----ELEPNQLSYTPLIHGFCVRGEVMVASDLL 474

Query: 128 EDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKH 187
            +M       +    G +I  L  SG+   A  V   M +R + P    YN ++ GLCK 
Sbjct: 475 VEMIGRGHTPDVVTLGALIHGLVVSGQVDEALMVREKMAERQVMPDANIYNVLISGLCKK 534

Query: 188 GGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC 247
                A  LL E ++    P +  Y  L++G      L  ARK+ +FM  K         
Sbjct: 535 RMLSAAKNLLVEMLEQKVQPDKFVYTTLIDGFIRSDKLSDARKIFEFMEEKGGYRDIVAY 594

Query: 248 NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA 307
           N  ++  C      E +  +  M +  C PD  T  T+I+G+ K G I+ AL+ L DM+ 
Sbjct: 595 NAMIKGYCKSGMMNEAVMCMSSMRKVGCIPDEFTYTTLIDGYAKKGDIKAALRFLCDMMK 654

Query: 308 GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRV 367
            + C P+ VT+ ++I G  N+G    A  +L+  M   G  P +V Y  ++  LF+  + 
Sbjct: 655 -RRCKPNIVTYASLICGYCNIGNTDSA-EVLFASMQSEGLFPNVVHYTVLIGSLFKKDKA 712

Query: 368 EEAKEVF-----------------------NCMLGI----------------------GV 382
            +A   F                       NC  G+                      G+
Sbjct: 713 IQAAAYFEHMLLNHCSPNDATMHYLVNGLTNCRYGMINSNCSDTDQAHKKSALLDVFKGL 772

Query: 383 VADS-----TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGK 436
           ++D      + Y  +I  LC  N L +A    + +     + D   + +++ G    GK
Sbjct: 773 ISDGLDPRISAYNAIIFSLCRHNMLGKAMELKEKMSNKGCLPDPVTFLSLLYGFSSVGK 831



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 89/372 (23%), Positives = 153/372 (41%), Gaps = 46/372 (12%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C    V  A  L  +M  RGH P+VV+   LIHG   +G++D A  V ++M    V+P+
Sbjct: 461 FCVRGEVMVASDLLVEMIGRGHTPDVVTLGALIHGLVVSGQVDEALMVREKMAERQVMPD 520

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWER------------------------------ 93
           +  Y+VL+ G+ + R +  A  L+ ++ E+                              
Sbjct: 521 ANIYNVLISGLCKKRMLSAAKNLLVEMLEQKVQPDKFVYTTLIDGFIRSDKLSDARKIFE 580

Query: 94  MKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSG 153
             EE+    +  A+  ++   C+ G +NE       M +   + +EF    +ID   + G
Sbjct: 581 FMEEKGGYRDIVAYNAMIKGYCKSGMMNEAVMCMSSMRKVGCIPDEFTYTTLIDGYAKKG 640

Query: 154 RNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYK 213
               A R +  M KR   P++V+Y S++ G C  G    A  L       G  P+   Y 
Sbjct: 641 DIKAALRFLCDMMKRRCKPNIVTYASLICGYCNIGNTDSAEVLFASMQSEGLFPNVVHYT 700

Query: 214 VLVEGLCGESDLEKARKVLQFML----SKKDVD-----------RTRICNIYLRALCLIK 258
           VL+  L  +    +A    + ML    S  D             R  + N          
Sbjct: 701 VLIGSLFKKDKAIQAAAYFEHMLLNHCSPNDATMHYLVNGLTNCRYGMINSNCSDTDQAH 760

Query: 259 NPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTF 318
             + LL+V   ++     P +   N +I   C+   + +A++ L + ++ K C PD VTF
Sbjct: 761 KKSALLDVFKGLISDGLDPRISAYNAIIFSLCRHNMLGKAME-LKEKMSNKGCLPDPVTF 819

Query: 319 TTIIFGLLNVGR 330
            ++++G  +VG+
Sbjct: 820 LSLLYGFSSVGK 831



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 67/270 (24%), Positives = 115/270 (42%), Gaps = 47/270 (17%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           ++ +A K+F  M+ +G   ++V+Y  +I GYC++G M+ A      MR  G +P+  TY+
Sbjct: 571 KLSDARKIFEFMEEKGGYRDIVAYNAMIKGYCKSGMMNEAVMCMSSMRKVGCIPDEFTYT 630

Query: 69  VLVRGVLRTRDVERA--------------NVLMFK-----------------LWERMKEE 97
            L+ G  +  D++ A              N++ +                  L+  M + 
Sbjct: 631 TLIDGYAKKGDIKAALRFLCDMMKRRCKPNIVTYASLICGYCNIGNTDSAEVLFASM-QS 689

Query: 98  EDLSVNNAAFANLVDSLCREGYVNEVFRIAEDM------PQGKS----VNEEFACGH-MI 146
           E L  N   +  L+ SL ++    +     E M      P   +    VN    C + MI
Sbjct: 690 EGLFPNVVHYTVLIGSLFKKDKAIQAAAYFEHMLLNHCSPNDATMHYLVNGLTNCRYGMI 749

Query: 147 DSLCR-SGRNHGASRVVYVMR---KRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQ 202
           +S C  + + H  S ++ V +     GL P + +YN+I+  LC+H    +A +L E+   
Sbjct: 750 NSNCSDTDQAHKKSALLDVFKGLISDGLDPRISAYNAIIFSLCRHNMLGKAMELKEKMSN 809

Query: 203 FGYLPSEHTYKVLVEGLCGESDLEKARKVL 232
            G LP   T+  L+ G        K R  L
Sbjct: 810 KGCLPDPVTFLSLLYGFSSVGKSGKWRSAL 839


>gi|50582688|gb|AAT78758.1| putative pentatricopeptide repeat-containing protein [Oryza sativa
           Japonica Group]
 gi|108709716|gb|ABF97511.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1025

 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 128/545 (23%), Positives = 244/545 (44%), Gaps = 58/545 (10%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   ++ +A  +   MK+   +PN V+Y T+++ Y + G    A ++ D+M   G+
Sbjct: 237 LNSLCTQGKLSKAESMLQKMKN-CRLPNAVTYNTILNWYVKKGRCKSALRILDDMEKNGI 295

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             +  TY++++  + + +   RA +L+    +RM+E  +L+ +  ++  L+     EG +
Sbjct: 296 EADLYTYNIMIDKLCKLKRSARAYLLL----KRMREV-NLTPDECSYNTLIHGFFGEGKI 350

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTP-------- 172
           N    I   M +            +ID  CR+GR   A RV+Y M+  G+ P        
Sbjct: 351 NLAIYIFNQMLRQSLKPSVATYTALIDGYCRNGRTDEARRVLYEMQITGVRPREVSKAKQ 410

Query: 173 -------------------------------------------SLVSYNSIVHGLCKHGG 189
                                                       + S+N I+   C+ G 
Sbjct: 411 ILKCMLADGIDPDVITYSALINEGMIAEAEQFKQYMSRMKISFDVASFNCIIDSYCQRGN 470

Query: 190 CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNI 249
            + A+ + +  ++ G+ P   TY  L+ GLC    L +A++ + ++L K      +  N 
Sbjct: 471 VLEAFSVYDNMVRHGWPPDICTYGSLLRGLCQGGHLVQAKEFMVYLLEKACAIDEKTLNT 530

Query: 250 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK 309
            L  +C      E L++   M+     PD  T   +++GFCK G++  AL +L  M+  K
Sbjct: 531 LLVGICKHGTLDEALDLCEKMVTRNILPDTYTYTILLDGFCKRGKVVPAL-ILLQMMLEK 589

Query: 310 FCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEE 369
              PD + +T ++ GL+N G+++ A  +  +++ + G     + YN+++ G  +  ++ E
Sbjct: 590 GLVPDTIAYTCLLNGLVNEGQVKAASYMFQEIICKEGLYADCIAYNSMMNGYLKGGQINE 649

Query: 370 AKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIK 429
            + +   M    V   S +Y I++ G  +  QL      + D+V      DN  Y  +I 
Sbjct: 650 IERLMRNMHENEVYPSSASYNILMHGYIKKGQLSRTLYLYRDMVKEGIKPDNVTYRLLIF 709

Query: 430 GLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNP 489
           GLC  G I  AV FL ++V  GV P+ + ++++I    + S    A Q+   M+   ++P
Sbjct: 710 GLCEYGLIEIAVKFLEKMVLEGVFPDNLAFDILIKAFSEKSKMSNALQLFSYMKWLHMSP 769

Query: 490 DAVTW 494
            + T+
Sbjct: 770 SSKTY 774



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 132/547 (24%), Positives = 244/547 (44%), Gaps = 63/547 (11%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D+LC L R   A+ L   M+     P+  SY TLIHG+   G++++A  +F++M    +
Sbjct: 306 IDKLCKLKRSARAYLLLKRMREVNLTPDECSYNTLIHGFFGEGKINLAIYIFNQMLRQSL 365

Query: 61  LPNSLTYSVLVRGV--------------------LRTRDVERANVLM------------- 87
            P+  TY+ L+ G                     +R R+V +A  ++             
Sbjct: 366 KPSVATYTALIDGYCRNGRTDEARRVLYEMQITGVRPREVSKAKQILKCMLADGIDPDVI 425

Query: 88  ----------------FKLW-ERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDM 130
                           FK +  RMK    +S + A+F  ++DS C+ G V E F + ++M
Sbjct: 426 TYSALINEGMIAEAEQFKQYMSRMK----ISFDVASFNCIIDSYCQRGNVLEAFSVYDNM 481

Query: 131 PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGC 190
            +     +    G ++  LC+ G    A   +  + ++       + N+++ G+CKHG  
Sbjct: 482 VRHGWPPDICTYGSLLRGLCQGGHLVQAKEFMVYLLEKACAIDEKTLNTLLVGICKHGTL 541

Query: 191 MRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIY 250
             A  L E+ +    LP  +TY +L++G C    +  A  +LQ ML K  V  T      
Sbjct: 542 DEALDLCEKMVTRNILPDTYTYTILLDGFCKRGKVVPALILLQMMLEKGLVPDTIAYTCL 601

Query: 251 LRALCLIKNPTELLNVLVFMLQTQCQ----PDVITLNTVINGFCKMGRIEEALKVLNDMV 306
           L  L    N  ++        +  C+     D I  N+++NG+ K G+I E  +++ +M 
Sbjct: 602 LNGLV---NEGQVKAASYMFQEIICKEGLYADCIAYNSMMNGYLKGGQINEIERLMRNMH 658

Query: 307 AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 366
             +   P + ++  ++ G +  G++   L  LY+ M + G  P  VTY  ++ GL     
Sbjct: 659 ENEV-YPSSASYNILMHGYIKKGQLSRTL-YLYRDMVKEGIKPDNVTYRLLIFGLCEYGL 716

Query: 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAA 426
           +E A +    M+  GV  D+  + I+I    E +++  A + +  + W      +  Y A
Sbjct: 717 IEIAVKFLEKMVLEGVFPDNLAFDILIKAFSEKSKMSNALQLFSYMKWLHMSPSSKTYVA 776

Query: 427 MIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG 486
           M+ GL R   + ++   L+++V+SG+ P    Y  +I+  C++     A+++  +M+  G
Sbjct: 777 MVNGLIRKNWLQQSYEILHDMVESGLQPKHTHYIALINAKCRVGDIDGAFELKEDMKALG 836

Query: 487 LNPDAVT 493
           + P  V 
Sbjct: 837 VVPSEVA 843



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 121/495 (24%), Positives = 230/495 (46%), Gaps = 20/495 (4%)

Query: 10  VGEAHKLFFDMKSRGHVP-NVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           + EA + F    SR  +  +V S+  +I  YC+ G +  A+ V+D M   G  P+  TY 
Sbjct: 436 IAEAEQ-FKQYMSRMKISFDVASFNCIIDSYCQRGNVLEAFSVYDNMVRHGWPPDICTYG 494

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
            L+RG+ +   + +A   M  L E+       +++      L+  +C+ G ++E   + E
Sbjct: 495 SLLRGLCQGGHLVQAKEFMVYLLEKA-----CAIDEKTLNTLLVGICKHGTLDEALDLCE 549

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
            M     + + +    ++D  C+ G+   A  ++ +M ++GL P  ++Y  +++GL   G
Sbjct: 550 KMVTRNILPDTYTYTILLDGFCKRGKVVPALILLQMMLEKGLVPDTIAYTCLLNGLVNEG 609

Query: 189 GCMRAYQLLEEGI-QFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC 247
               A  + +E I + G       Y  ++ G      + +  ++++ M   +    +   
Sbjct: 610 QVKAASYMFQEIICKEGLYADCIAYNSMMNGYLKGGQINEIERLMRNMHENEVYPSSASY 669

Query: 248 NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV- 306
           NI +         +  L +   M++   +PD +T   +I G C+ G IE A+K L  MV 
Sbjct: 670 NILMHGYIKKGQLSRTLYLYRDMVKEGIKPDNVTYRLLIFGLCEYGLIEIAVKFLEKMVL 729

Query: 307 AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 366
            G F  PD + F  +I       ++  AL L +  M     SP   TY A++ GL R   
Sbjct: 730 EGVF--PDNLAFDILIKAFSEKSKMSNALQL-FSYMKWLHMSPSSKTYVAMVNGLIRKNW 786

Query: 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI----VWPSNIHDNY 422
           ++++ E+ + M+  G+    T Y  +I+  C    +D A    +D+    V PS + +  
Sbjct: 787 LQQSYEILHDMVESGLQPKHTHYIALINAKCRVGDIDGAFELKEDMKALGVVPSEVAE-- 844

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
             +++++GLC+ GK+ EA+     ++ +G+ P I  +  ++ G CK     +A+ + + M
Sbjct: 845 --SSIVRGLCKCGKVEEAIIVFSSIMRAGMVPTIATFTTLMHGLCKEFKIDDAFHLKQLM 902

Query: 483 RKNGLNPDAVTWRIL 497
              GL  D VT+ +L
Sbjct: 903 ESCGLKVDVVTYNVL 917



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 114/472 (24%), Positives = 220/472 (46%), Gaps = 13/472 (2%)

Query: 31  SYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKL 90
           +  TL+ G C+ G +D A  + ++M    +LP++ TY++L+ G  +   V  A +L+   
Sbjct: 527 TLNTLLVGICKHGTLDEALDLCEKMVTRNILPDTYTYTILLDGFCKRGKVVPALILL--- 583

Query: 91  WERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE-FACGHMIDSL 149
             +M  E+ L  +  A+  L++ L  EG V     + +++   + +  +  A   M++  
Sbjct: 584 --QMMLEKGLVPDTIAYTCLLNGLVNEGQVKAASYMFQEIICKEGLYADCIAYNSMMNGY 641

Query: 150 CRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSE 209
            + G+ +   R++  M +  + PS  SYN ++HG  K G   R   L  + ++ G  P  
Sbjct: 642 LKGGQINEIERLMRNMHENEVYPSSASYNILMHGYIKKGQLSRTLYLYRDMVKEGIKPDN 701

Query: 210 HTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVF 269
            TY++L+ GLC    +E A K L+ M+ +         +I ++A       +  L +  +
Sbjct: 702 VTYRLLIFGLCEYGLIEIAVKFLEKMVLEGVFPDNLAFDILIKAFSEKSKMSNALQLFSY 761

Query: 270 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG 329
           M      P   T   ++NG  +   ++++ ++L+DMV      P    +  +I     VG
Sbjct: 762 MKWLHMSPSSKTYVAMVNGLIRKNWLQQSYEILHDMVESGL-QPKHTHYIALINAKCRVG 820

Query: 330 RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTY 389
            I  A  L  + M   G  P  V  ++++RGL +  +VEEA  VF+ ++  G+V    T+
Sbjct: 821 DIDGAFEL-KEDMKALGVVPSEVAESSIVRGLCKCGKVEEAIIVFSSIMRAGMVPTIATF 879

Query: 390 AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449
             ++ GLC+  ++D+A      +       D   Y  +I GLC    I +A+    E+  
Sbjct: 880 TTLMHGLCKEFKIDDAFHLKQLMESCGLKVDVVTYNVLITGLCNKKCICDALDLYEEMKS 939

Query: 450 SGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL-----NPDAVTWRI 496
            G+ PNI  Y  +          ++  ++L+++   G+     +P+++ WR+
Sbjct: 940 KGLLPNITTYITLTGAMYATGTMQDGEKLLKDIEDRGIVPSYKHPESLEWRM 991



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 102/459 (22%), Positives = 222/459 (48%), Gaps = 20/459 (4%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           +C    + EA  L   M +R  +P+  +YT L+ G+C+ G++  A  +   M   G++P+
Sbjct: 535 ICKHGTLDEALDLCEKMVTRNILPDTYTYTILLDGFCKRGKVVPALILLQMMLEKGLVPD 594

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           ++ Y+ L+ G++    V+ A+ +    ++ +  +E L  +  A+ ++++   + G +NE+
Sbjct: 595 TIAYTCLLNGLVNEGQVKAASYM----FQEIICKEGLYADCIAYNSMMNGYLKGGQINEI 650

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMR---KRGLTPSLVSYNSI 180
            R+  +M + +      +   ++    + G+    SR +Y+ R   K G+ P  V+Y  +
Sbjct: 651 ERLMRNMHENEVYPSSASYNILMHGYIKKGQ---LSRTLYLYRDMVKEGIKPDNVTYRLL 707

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM----L 236
           + GLC++G    A + LE+ +  G  P    + +L++    +S +  A ++  +M    +
Sbjct: 708 IFGLCEYGLIEIAVKFLEKMVLEGVFPDNLAFDILIKAFSEKSKMSNALQLFSYMKWLHM 767

Query: 237 SKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIE 296
           S        + N  +R   L ++      +L  M+++  QP       +IN  C++G I+
Sbjct: 768 SPSSKTYVAMVNGLIRKNWLQQS----YEILHDMVESGLQPKHTHYIALINAKCRVGDID 823

Query: 297 EALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
            A ++  DM A     P  V  ++I+ GL   G+++EA+ +   +M + G  P I T+  
Sbjct: 824 GAFELKEDMKALGV-VPSEVAESSIVRGLCKCGKVEEAIIVFSSIM-RAGMVPTIATFTT 881

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416
           ++ GL +  ++++A  +   M   G+  D  TY ++I GLC    + +A   ++++    
Sbjct: 882 LMHGLCKEFKIDDAFHLKQLMESCGLKVDVVTYNVLITGLCNKKCICDALDLYEEMKSKG 941

Query: 417 NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN 455
            + +   Y  +   +  +G + +    L ++ D G+ P+
Sbjct: 942 LLPNITTYITLTGAMYATGTMQDGEKLLKDIEDRGIVPS 980



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 121/522 (23%), Positives = 222/522 (42%), Gaps = 95/522 (18%)

Query: 28  NVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLM 87
           +V +   +++  C  G++  A  +  +M++C  LPN++TY+ ++                
Sbjct: 229 DVTTCNIVLNSLCTQGKLSKAESMLQKMKNCR-LPNAVTYNTILN--------------- 272

Query: 88  FKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMID 147
              W                        ++G      RI +DM +     + +    MID
Sbjct: 273 ---W----------------------YVKKGRCKSALRILDDMEKNGIEADLYTYNIMID 307

Query: 148 SLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLP 207
            LC+  R+  A  ++  MR+  LTP   SYN+++HG    G    A  +  + ++    P
Sbjct: 308 KLCKLKRSARAYLLLKRMREVNLTPDECSYNTLIHGFFGEGKINLAIYIFNQMLRQSLKP 367

Query: 208 SEHTYKVLVEGLC--GESD------------------LEKARKVLQFMLS---------- 237
           S  TY  L++G C  G +D                  + KA+++L+ ML+          
Sbjct: 368 SVATYTALIDGYCRNGRTDEARRVLYEMQITGVRPREVSKAKQILKCMLADGIDPDVITY 427

Query: 238 ---------------KKDVDRTRIC------NIYLRALCLIKNPTELLNVLVFMLQTQCQ 276
                          K+ + R +I       N  + + C   N  E  +V   M++    
Sbjct: 428 SALINEGMIAEAEQFKQYMSRMKISFDVASFNCIIDSYCQRGNVLEAFSVYDNMVRHGWP 487

Query: 277 PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALN 336
           PD+ T  +++ G C+ G + +A + +  ++  K CA D  T  T++ G+   G + EAL+
Sbjct: 488 PDICTYGSLLRGLCQGGHLVQAKEFMVYLLE-KACAIDEKTLNTLLVGICKHGTLDEALD 546

Query: 337 LLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 396
           L  + M  R   P   TY  +L G  +  +V  A  +   ML  G+V D+  Y  +++GL
Sbjct: 547 LC-EKMVTRNILPDTYTYTILLDGFCKRGKVVPALILLQMMLEKGLVPDTIAYTCLLNGL 605

Query: 397 CESNQLDEAKRFWDDIVWPSNIH-DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN 455
               Q+  A   + +I+    ++ D   Y +M+ G  + G+I+E    +  + ++ V P+
Sbjct: 606 VNEGQVKAASYMFQEIICKEGLYADCIAYNSMMNGYLKGGQINEIERLMRNMHENEVYPS 665

Query: 456 IVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
              YN+++ G  K         + R+M K G+ PD VT+R+L
Sbjct: 666 SASYNILMHGYIKKGQLSRTLYLYRDMVKEGIKPDNVTYRLL 707


>gi|357139998|ref|XP_003571561.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 807

 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 126/488 (25%), Positives = 228/488 (46%), Gaps = 7/488 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC    V +A  +   M   G  P+ V+Y TLIHGY   G+   A ++F EM   GV+PN
Sbjct: 256 LCKARAVDKAQGILRQMVGNGVQPDNVTYNTLIHGYSTLGQWKQAVRMFKEMTSRGVIPN 315

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           ++T S  V  + +   +E A      +  +  +     +N  +++ L+      G + ++
Sbjct: 316 TVTCSTFVAFLCKHGRIEEAREFFDSMLAKGHK-----LNIISYSTLLHGYATAGCLVDM 370

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             +   M +   V  +     +++   + G    A  +   M+KRGL P +++Y +++H 
Sbjct: 371 SNLFNLMVRDGIVPNQHVFNILVNGYAKCGMVREAMFIFEDMQKRGLNPDVLTYLAVIHA 430

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            C+ G    A       I  G  P+   Y+ L++G C   DL KA +++  + +K     
Sbjct: 431 FCRMGSMDDAMDKFNHMIDKGVEPNFAVYQCLIQGFCTHGDLVKAEELVYEIRNKGLGPC 490

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                  +  LC      E   +   +++T  + DV    ++I+G+C +G++ EA +V +
Sbjct: 491 ILSFASLINHLCKEGRVFEAQRIFDMIIRTGEKADVNIFTSLIDGYCLIGKMSEAFRVHD 550

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            MV+     PD VT+ T++ G    GRI + L +L++ +  +G  P   TY  +L GLF 
Sbjct: 551 AMVSVGI-EPDIVTYGTLVNGCCKNGRIDDGL-ILFRELLHKGVKPTTFTYGIILDGLFH 608

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
             R   AKE+F  M+  G+     TY+I++ GLC +N  +EA   +  +   +   D  +
Sbjct: 609 AGRTAAAKEMFQEMIESGIAVTIPTYSILLTGLCRNNCTEEAITVFQKLCAMNVKFDIVI 668

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
              MI  + ++ +  EA      + D G+ P +  Y ++++   K     EA  +   M 
Sbjct: 669 LNIMISKMFKARRREEAEGLFASIPDYGLVPTVQTYTIMMENLIKEGSVEEAEGVFSVML 728

Query: 484 KNGLNPDA 491
           K+GL+P +
Sbjct: 729 KSGLSPTS 736



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 131/534 (24%), Positives = 241/534 (45%), Gaps = 43/534 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKV-FDEMRHCG 59
           +D  C   R+  A   F  +  +G   +V+  ++L+ G C     D A  V F  M   G
Sbjct: 110 IDCCCRARRLDLAFAFFGCLLRQGMKADVIVVSSLLRGLCDAKRTDEAVDVLFHRMPELG 169

Query: 60  VLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGY 119
            +P++++YS +++ V    D  R+   +  L   +K+      N   ++ +V  L +EG 
Sbjct: 170 CVPDAISYSTVLKSVC---DDGRSQWALDILRMAVKQGGGCPCNVVVYSTVVHGLFKEGK 226

Query: 120 VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           V E   +  +M Q            +I +LC++     A  ++  M   G+ P  V+YN+
Sbjct: 227 VGEACDLFHEMTQQGVPPNVVTYNSVIHALCKARAVDKAQGILRQMVGNGVQPDNVTYNT 286

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++HG    G   +A ++ +E    G +P+  T    V  LC    +E+AR+    ML+K 
Sbjct: 287 LIHGYSTLGQWKQAVRMFKEMTSRGVIPNTVTCSTFVAFLCKHGRIEEAREFFDSMLAKG 346

Query: 240 D----VDRTRICNIYLRALCLIKNPTELLNVLVF-------------------------- 269
                +  + + + Y  A CL+ + + L N++V                           
Sbjct: 347 HKLNIISYSTLLHGYATAGCLV-DMSNLFNLMVRDGIVPNQHVFNILVNGYAKCGMVREA 405

Query: 270 ------MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF 323
                 M +    PDV+T   VI+ FC+MG +++A+   N M+  K   P+   +  +I 
Sbjct: 406 MFIFEDMQKRGLNPDVLTYLAVIHAFCRMGSMDDAMDKFNHMI-DKGVEPNFAVYQCLIQ 464

Query: 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 383
           G    G + +A  L+Y++   +G  P I+++ +++  L +  RV EA+ +F+ ++  G  
Sbjct: 465 GFCTHGDLVKAEELVYEIR-NKGLGPCILSFASLINHLCKEGRVFEAQRIFDMIIRTGEK 523

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
           AD   +  +IDG C   ++ EA R  D +V      D   Y  ++ G C++G+I + +  
Sbjct: 524 ADVNIFTSLIDGYCLIGKMSEAFRVHDAMVSVGIEPDIVTYGTLVNGCCKNGRIDDGLIL 583

Query: 444 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
             EL+  GV P    Y +++DG         A ++ +EM ++G+     T+ IL
Sbjct: 584 FRELLHKGVKPTTFTYGIILDGLFHAGRTAAAKEMFQEMIESGIAVTIPTYSIL 637



 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 127/522 (24%), Positives = 241/522 (46%), Gaps = 47/522 (9%)

Query: 23  RGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVER 82
           R  +P V +Y+ LI   CR   +D+A+  F  +   G+  + +  S L+RG+    D +R
Sbjct: 97  RVALPTVYTYSILIDCCCRARRLDLAFAFFGCLLRQGMKADVIVVSSLLRGLC---DAKR 153

Query: 83  ANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREG---YVNEVFRIAEDMPQGKSVNEE 139
            +  +  L+ RM E   +  +  +++ ++ S+C +G   +  ++ R+A     G   N  
Sbjct: 154 TDEAVDVLFHRMPELGCVP-DAISYSTVLKSVCDDGRSQWALDILRMAVKQGGGCPCN-V 211

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
                ++  L + G+   A  + + M ++G+ P++V+YNS++H LCK     +A  +L +
Sbjct: 212 VVYSTVVHGLFKEGKVGEACDLFHEMTQQGVPPNVVTYNSVIHALCKARAVDKAQGILRQ 271

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
            +  G  P   TY  L+ G       ++A ++ + M S+  +  T  C+ ++  LC    
Sbjct: 272 MVGNGVQPDNVTYNTLIHGYSTLGQWKQAVRMFKEMTSRGVIPNTVTCSTFVAFLCKHGR 331

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
             E       ML    + ++I+ +T+++G+   G + +   + N MV      P+   F 
Sbjct: 332 IEEAREFFDSMLAKGHKLNIISYSTLLHGYATAGCLVDMSNLFNLMVRDGI-VPNQHVFN 390

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
            ++ G    G ++EA+  +++ M +RG +P ++TY AV+    R+  +++A + FN M+ 
Sbjct: 391 ILVNGYAKCGMVREAM-FIFEDMQKRGLNPDVLTYLAVIHAFCRMGSMDDAMDKFNHMID 449

Query: 380 IGVVADSTTYAIVIDG-----------------------------------LCESNQLDE 404
            GV  +   Y  +I G                                   LC+  ++ E
Sbjct: 450 KGVEPNFAVYQCLIQGFCTHGDLVKAEELVYEIRNKGLGPCILSFASLINHLCKEGRVFE 509

Query: 405 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
           A+R +D I+      D  ++ ++I G C  GK+ EA      +V  G+ P+IV Y  +++
Sbjct: 510 AQRIFDMIIRTGEKADVNIFTSLIDGYCLIGKMSEAFRVHDAMVSVGIEPDIVTYGTLVN 569

Query: 465 GACKLSMKREAYQILREMRKNGLNPDAVTWR-ILDKL-HGNR 504
           G CK     +   + RE+   G+ P   T+  ILD L H  R
Sbjct: 570 GCCKNGRIDDGLILFRELLHKGVKPTTFTYGIILDGLFHAGR 611



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 127/463 (27%), Positives = 219/463 (47%), Gaps = 14/463 (3%)

Query: 6   GLSRVGE---AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           G S +G+   A ++F +M SRG +PN V+ +T +   C+ G ++ A + FD M   G   
Sbjct: 290 GYSTLGQWKQAVRMFKEMTSRGVIPNTVTCSTFVAFLCKHGRIEEAREFFDSMLAKGHKL 349

Query: 63  NSLTYSVLVRGVLRTR-DVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVN 121
           N ++YS L+ G       V+ +N  +F L  R    + +  N   F  LV+   + G V 
Sbjct: 350 NIISYSTLLHGYATAGCLVDMSN--LFNLMVR----DGIVPNQHVFNILVNGYAKCGMVR 403

Query: 122 EVFRIAEDMPQGKSVNEE-FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           E   I EDM Q + +N +      +I + CR G    A      M  +G+ P+   Y  +
Sbjct: 404 EAMFIFEDM-QKRGLNPDVLTYLAVIHAFCRMGSMDDAMDKFNHMIDKGVEPNFAVYQCL 462

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G C HG  ++A +L+ E    G  P   ++  L+  LC E  + +A+++   ++   +
Sbjct: 463 IQGFCTHGDLVKAEELVYEIRNKGLGPCILSFASLINHLCKEGRVFEAQRIFDMIIRTGE 522

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                I    +   CLI   +E   V   M+    +PD++T  T++NG CK GRI++ L 
Sbjct: 523 KADVNIFTSLIDGYCLIGKMSEAFRVHDAMVSVGIEPDIVTYGTLVNGCCKNGRIDDGLI 582

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +  +++  K   P   T+  I+ GL + GR   A   ++Q M + G +  I TY+ +L G
Sbjct: 583 LFRELLH-KGVKPTTFTYGIILDGLFHAGRTAAAKE-MFQEMIESGIAVTIPTYSILLTG 640

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L R    EEA  VF  +  + V  D     I+I  + ++ + +EA+  +  I     +  
Sbjct: 641 LCRNNCTEEAITVFQKLCAMNVKFDIVILNIMISKMFKARRREEAEGLFASIPDYGLVPT 700

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463
              Y  M++ L + G + EA      ++ SG++P     NV++
Sbjct: 701 VQTYTIMMENLIKEGSVEEAEGVFSVMLKSGLSPTSHFINVIV 743



 Score =  161 bits (408), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 125/498 (25%), Positives = 220/498 (44%), Gaps = 25/498 (5%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           +VGEA  LF +M  +G  PNVV+Y ++IH  C+   +D A  +  +M   GV P+++TY+
Sbjct: 226 KVGEACDLFHEMTQQGVPPNVVTYNSVIHALCKARAVDKAQGILRQMVGNGVQPDNVTYN 285

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
            L+ G   T    +  V MFK          +  N    +  V  LC+ G + E     +
Sbjct: 286 TLIHG-YSTLGQWKQAVRMFKEMT----SRGVIPNTVTCSTFVAFLCKHGRIEEAREFFD 340

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHG---------ASRVVYVMRKRGLTPSLVSYNS 179
            M          A GH ++ +  S   HG          S +  +M + G+ P+   +N 
Sbjct: 341 SM---------LAKGHKLNIISYSTLLHGYATAGCLVDMSNLFNLMVRDGIVPNQHVFNI 391

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           +V+G  K G    A  + E+  + G  P   TY  ++   C    ++ A      M+ K 
Sbjct: 392 LVNGYAKCGMVREAMFIFEDMQKRGLNPDVLTYLAVIHAFCRMGSMDDAMDKFNHMIDKG 451

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                 +    ++  C   +  +   ++  +      P +++  ++IN  CK GR+ EA 
Sbjct: 452 VEPNFAVYQCLIQGFCTHGDLVKAEELVYEIRNKGLGPCILSFASLINHLCKEGRVFEAQ 511

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           ++  DM+       D   FT++I G   +G++ EA  + +  M   G  P IVTY  ++ 
Sbjct: 512 RIF-DMIIRTGEKADVNIFTSLIDGYCLIGKMSEAFRV-HDAMVSVGIEPDIVTYGTLVN 569

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
           G  +  R+++   +F  +L  GV   + TY I++DGL  + +   AK  + +++      
Sbjct: 570 GCCKNGRIDDGLILFRELLHKGVKPTTFTYGIILDGLFHAGRTAAAKEMFQEMIESGIAV 629

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
               Y+ ++ GLCR+    EA+    +L    V  +IV  N++I    K   + EA  + 
Sbjct: 630 TIPTYSILLTGLCRNNCTEEAITVFQKLCAMNVKFDIVILNIMISKMFKARRREEAEGLF 689

Query: 480 REMRKNGLNPDAVTWRIL 497
             +   GL P   T+ I+
Sbjct: 690 ASIPDYGLVPTVQTYTIM 707



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 102/480 (21%), Positives = 228/480 (47%), Gaps = 10/480 (2%)

Query: 20  MKSRGHVP-NVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTR 78
           +K  G  P NVV Y+T++HG  + G++  A  +F EM   GV PN +TY+ ++  + + R
Sbjct: 201 VKQGGGCPCNVVVYSTVVHGLFKEGKVGEACDLFHEMTQQGVPPNVVTYNSVIHALCKAR 260

Query: 79  DVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNE 138
            V++A  ++     R      +  +N  +  L+      G   +  R+ ++M     +  
Sbjct: 261 AVDKAQGIL-----RQMVGNGVQPDNVTYNTLIHGYSTLGQWKQAVRMFKEMTSRGVIPN 315

Query: 139 EFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLE 198
              C   +  LC+ GR   A      M  +G   +++SY++++HG    G  +    L  
Sbjct: 316 TVTCSTFVAFLCKHGRIEEAREFFDSMLAKGHKLNIISYSTLLHGYATAGCLVDMSNLFN 375

Query: 199 EGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNI-YLRALCLI 257
             ++ G +P++H + +LV G      + +A  + + M  K+ ++   +  +  + A C +
Sbjct: 376 LMVRDGIVPNQHVFNILVNGYAKCGMVREAMFIFEDM-QKRGLNPDVLTYLAVIHAFCRM 434

Query: 258 KNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVT 317
            +  + ++    M+    +P+      +I GFC  G + +A +++ + +  K   P  ++
Sbjct: 435 GSMDDAMDKFNHMIDKGVEPNFAVYQCLIQGFCTHGDLVKAEELVYE-IRNKGLGPCILS 493

Query: 318 FTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCM 377
           F ++I  L   GR+ EA   ++ ++ + G    +  + +++ G   + ++ EA  V + M
Sbjct: 494 FASLINHLCKEGRVFEA-QRIFDMIIRTGEKADVNIFTSLIDGYCLIGKMSEAFRVHDAM 552

Query: 378 LGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKI 437
           + +G+  D  TY  +++G C++ ++D+    + +++        + Y  ++ GL  +G+ 
Sbjct: 553 VSVGIEPDIVTYGTLVNGCCKNGRIDDGLILFRELLHKGVKPTTFTYGIILDGLFHAGRT 612

Query: 438 HEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
             A     E+++SG+   I  Y++++ G C+ +   EA  + +++    +  D V   I+
Sbjct: 613 AAAKEMFQEMIESGIAVTIPTYSILLTGLCRNNCTEEAITVFQKLCAMNVKFDIVILNIM 672



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 113/440 (25%), Positives = 191/440 (43%), Gaps = 44/440 (10%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           CG+ R  EA  +F DM+ RG  P+V++Y  +IH +CR G MD A   F+ M   GV PN 
Sbjct: 399 CGMVR--EAMFIFEDMQKRGLNPDVLTYLAVIHAFCRMGSMDDAMDKFNHMIDKGVEPNF 456

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
             Y  L++G     D+ +A  L++++       + L     +FA+L++ LC+EG V E  
Sbjct: 457 AVYQCLIQGFCTHGDLVKAEELVYEI-----RNKGLGPCILSFASLINHLCKEGRVFEAQ 511

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
           RI + + +     +      +ID  C  G+   A RV   M   G+ P +V+Y ++V+G 
Sbjct: 512 RIFDMIIRTGEKADVNIFTSLIDGYCLIGKMSEAFRVHDAMVSVGIEPDIVTYGTLVNGC 571

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
           CK+G       L  E +  G  P+  TY ++++GL        A+++ Q M+        
Sbjct: 572 CKNGRIDDGLILFRELLHKGVKPTTFTYGIILDGLFHAGRTAAAKEMFQEMIESGIAVTI 631

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
              +I L  LC      E + V   +     + D++ LN +I+   K  R EEA      
Sbjct: 632 PTYSILLTGLCRNNCTEEAITVFQKLCAMNVKFDIVILNIMISKMFKARRREEA------ 685

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
                                            L+  +P  G  P + TY  ++  L + 
Sbjct: 686 -------------------------------EGLFASIPDYGLVPTVQTYTIMMENLIKE 714

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY 424
             VEEA+ VF+ ML  G+   S    +++  L E  ++ +A  +   +   S + +    
Sbjct: 715 GSVEEAEGVFSVMLKSGLSPTSHFINVIVRTLLEKGEIVKAGIYMCRVDGKSILFEASTA 774

Query: 425 AAMIKGLCRSGKIHEAVHFL 444
           + ++      GK  E ++ L
Sbjct: 775 SMLLSLFSCKGKHREHLNLL 794



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 59/254 (23%), Positives = 108/254 (42%), Gaps = 5/254 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   RV EA ++F  +   G   +V  +T+LI GYC  G+M  A++V D M   G+
Sbjct: 498 INHLCKEGRVFEAQRIFDMIIRTGEKADVNIFTSLIDGYCLIGKMSEAFRVHDAMVSVGI 557

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TY  LV G  +   ++   +L  +L  +  +    +     +  ++D L   G  
Sbjct: 558 EPDIVTYGTLVNGCCKNGRIDDGLILFRELLHKGVKPTTFT-----YGIILDGLFHAGRT 612

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                + ++M +            ++  LCR+     A  V   +    +   +V  N +
Sbjct: 613 AAAKEMFQEMIESGIAVTIPTYSILLTGLCRNNCTEEAITVFQKLCAMNVKFDIVILNIM 672

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +  + K      A  L      +G +P+  TY +++E L  E  +E+A  V   ML    
Sbjct: 673 ISKMFKARRREEAEGLFASIPDYGLVPTVQTYTIMMENLIKEGSVEEAEGVFSVMLKSGL 732

Query: 241 VDRTRICNIYLRAL 254
              +   N+ +R L
Sbjct: 733 SPTSHFINVIVRTL 746


>gi|91806021|gb|ABE65739.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 450

 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 123/485 (25%), Positives = 225/485 (46%), Gaps = 54/485 (11%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M   G  P V+++ TLI+G C  G +  A  + ++M   G+  + +TY  +V G+ +  D
Sbjct: 1   MVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGD 60

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
            + A  L+ K+     EE  +  +   ++ ++D LC++G+ ++   +  +M +       
Sbjct: 61  TKSALNLLSKM-----EETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNV 115

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
           F    MID  C  GR   A R++  M +R + P ++++N+++    K G    A +L +E
Sbjct: 116 FTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDE 175

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
            +     P   TY  ++ G C  +  + A+ +   M S                      
Sbjct: 176 MLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMAS---------------------- 213

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
                            PDV+T NT+I+ +C+  R++E +++L + ++ +    +  T+ 
Sbjct: 214 -----------------PDVVTFNTIIDVYCRAKRVDEGMQLLRE-ISRRGLVANTTTYN 255

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
           T+I G   V  +  A +L +Q M   G  P  +T N +L G     ++EEA E+F  +  
Sbjct: 256 TLIHGFCEVDNLNAAQDL-FQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQM 314

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH----DNYVYAAMIKGLCRSG 435
             +  D+  Y I+I G+C+ +++DEA   WD +     IH    D   Y  MI G C   
Sbjct: 315 SKIDLDTVAYNIIIHGMCKGSKVDEA---WD-LFCSLPIHGVEPDVQTYNVMISGFCGKS 370

Query: 436 KIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWR 495
            I +A    +++ D+G  P+   YN +I G  K     ++ +++ EMR NG + DA T +
Sbjct: 371 AISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFTIK 430

Query: 496 ILDKL 500
           ++  L
Sbjct: 431 MVADL 435



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 110/465 (23%), Positives = 211/465 (45%), Gaps = 48/465 (10%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   RV EA  L   M  +G   +VV+Y T+++G C+ G+   A  +  +M    +
Sbjct: 17  INGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHI 76

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ + YS                                         ++D LC++G+ 
Sbjct: 77  KPDVVIYSA----------------------------------------IIDRLCKDGHH 96

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           ++   +  +M +       F    MID  C  GR   A R++  M +R + P ++++N++
Sbjct: 97  SDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNAL 156

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +    K G    A +L +E +     P   TY  ++ G C  +  + A+ +   M S   
Sbjct: 157 ISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMASPDV 216

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           V    I ++Y RA    K   E + +L  + +     +  T NT+I+GFC++  +  A  
Sbjct: 217 VTFNTIIDVYCRA----KRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQD 272

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +  +M++   C PD +T   +++G     +++EAL  L++V+         V YN ++ G
Sbjct: 273 LFQEMISHGVC-PDTITCNILLYGFCENEKLEEALE-LFEVIQMSKIDLDTVAYNIIIHG 330

Query: 361 LFRLRRVEEAKEVFNCMLGI-GVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
           + +  +V+EA ++F C L I GV  D  TY ++I G C  + + +A   +  +    +  
Sbjct: 331 MCKGSKVDEAWDLF-CSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEP 389

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
           DN  Y  +I+G  ++G+I +++  + E+  +G + +     +V D
Sbjct: 390 DNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFTIKMVAD 434



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 105/414 (25%), Positives = 181/414 (43%), Gaps = 28/414 (6%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           +C +     A  L   M+     P+VV Y+ +I   C+ G    A  +F EM   G+ PN
Sbjct: 55  MCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPN 114

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             TY+ ++ G         A  L+  + ER     +++ +   F  L+ +  +EG + E 
Sbjct: 115 VFTYNCMIDGFCSFGRWSDAQRLLRDMIER-----EINPDVLTFNALISASVKEGKLFEA 169

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            ++ ++M       +      MI   C+  R   A  +  +M     +P +V++N+I+  
Sbjct: 170 EKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMA----SPDVVTFNTIIDV 225

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            C+        QLL E  + G + +  TY  L+ G C   +L  A+ + Q M+S      
Sbjct: 226 YCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPD 285

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
           T  CNI L   C  +   E L +   +  ++   D +  N +I+G CK  +++EA  +  
Sbjct: 286 TITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDL-- 343

Query: 304 DMVAGKFCA-------PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
                 FC+       PD  T+  +I G      I +A N+L+  M   G+ P   TYN 
Sbjct: 344 ------FCSLPIHGVEPDVQTYNVMISGFCGKSAISDA-NVLFHKMKDNGHEPDNSTYNT 396

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD 410
           ++RG  +   ++++ E+ + M   G   D+ T  +V D L    +LD  K F D
Sbjct: 397 LIRGCLKAGEIDKSIELISEMRSNGFSGDAFTIKMVAD-LITDGRLD--KSFSD 447



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 108/228 (47%), Gaps = 6/228 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C   RV E  +L  ++  RG V N  +Y TLIHG+C    ++ A  +F EM   GV
Sbjct: 223 IDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGV 282

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+++T ++L+ G      +E A     +L+E ++  + + ++  A+  ++  +C+   V
Sbjct: 283 CPDTITCNILLYGFCENEKLEEA----LELFEVIQMSK-IDLDTVAYNIIIHGMCKGSKV 337

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E + +   +P      +      MI   C       A+ + + M+  G  P   +YN++
Sbjct: 338 DEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTL 397

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKA 228
           + G  K G   ++ +L+ E    G+     T K +V  L  +  L+K+
Sbjct: 398 IRGCLKAGEIDKSIELISEMRSNGFSGDAFTIK-MVADLITDGRLDKS 444


>gi|302792250|ref|XP_002977891.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
 gi|300154594|gb|EFJ21229.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
          Length = 385

 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 102/342 (29%), Positives = 175/342 (51%), Gaps = 39/342 (11%)

Query: 172 PSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKV 231
           P+ V+YNS++ GLCK      AY LLEE +  G +P   TY  L+ G C     + A +V
Sbjct: 52  PTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRV 111

Query: 232 LQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK 291
            + ++++                                     +PDV+T + +I+G CK
Sbjct: 112 FEQLVARG-----------------------------------FRPDVVTYSCLIDGLCK 136

Query: 292 MGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGI 351
            GR++EA+ +   M+    C P+ VT+ ++I G   +G++ EA+NLL + M + G SP +
Sbjct: 137 EGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLL-ERMAETGSSPDV 195

Query: 352 VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDD 411
           VTY  ++ G  +L R+++A ++ N M   G+  +  T+  ++DGLC  N+L +A     +
Sbjct: 196 VTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPNVVTFTSLMDGLCRENRLSDAVHILGE 255

Query: 412 IVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSM 471
           +   S     Y Y  ++ G CR  ++ EA  F+ E +D    PN+V +N++I G CK++ 
Sbjct: 256 MRRKSCSPTVYTYNTILDGYCRVNQLEEARKFMLEEMD--CPPNVVSFNIMIRGLCKVNR 313

Query: 472 KREAYQILREMRKNGLNPDAVTW-RILDKLHGNRGNDFGLRI 512
             EA +++ E R+   NPD V +  ++D L   +  D   R+
Sbjct: 314 SSEAMELVEEARRRRCNPDVVMYTTVIDVLCREKKVDEACRV 355



 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 93/325 (28%), Positives = 172/325 (52%), Gaps = 8/325 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R  EA+ L  +M   G +P++ +YTTLI G+C++ + D A +VF+++   G  P+
Sbjct: 64  LCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPD 123

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TYS L+ G+ +   ++ A      L+ RM +      N   + +L+   CR G ++E 
Sbjct: 124 VVTYSCLIDGLCKEGRLKEA----IDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEA 179

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             + E M +  S  +      +++  C+  R   A  ++  M ++GLTP++V++ S++ G
Sbjct: 180 MNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPNVVTFTSLMDG 239

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LC+      A  +L E  +    P+ +TY  +++G C  + LE+ARK   FML + D   
Sbjct: 240 LCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRVNQLEEARK---FMLEEMDCPP 296

Query: 244 TRIC-NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
             +  NI +R LC +   +E + ++    + +C PDV+   TVI+  C+  +++EA +V 
Sbjct: 297 NVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDVLCREKKVDEACRVY 356

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLN 327
             M+    C P+++T++T  +  L 
Sbjct: 357 RKMLEEPGCLPNSITYSTFDYWPLQ 381



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 97/358 (27%), Positives = 173/358 (48%), Gaps = 41/358 (11%)

Query: 106 AFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVM 165
            + +L+  LC+    +E + + E+M     + + F    +I   C+S ++  A RV   +
Sbjct: 56  TYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQL 115

Query: 166 RKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY-LPSEHTYKVLVEGLCGESD 224
             RG  P +V+Y+ ++ GLCK G    A  L    I+ G  +P+  TY  L+ G C    
Sbjct: 116 VARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGK 175

Query: 225 LEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNT 284
           +++A                                   +N+L  M +T   PDV+T  T
Sbjct: 176 MDEA-----------------------------------MNLLERMAETGSSPDVVTYTT 200

Query: 285 VINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ 344
           ++NGFCK+ R+++A  +LN M   K   P+ VTFT+++ GL    R+ +A+++L + M +
Sbjct: 201 LMNGFCKLARLDDAYDLLNQMTR-KGLTPNVVTFTSLMDGLCRENRLSDAVHILGE-MRR 258

Query: 345 RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 404
           +  SP + TYN +L G  R+ ++EEA++    +  +    +  ++ I+I GLC+ N+  E
Sbjct: 259 KSCSPTVYTYNTILDGYCRVNQLEEARKFM--LEEMDCPPNVVSFNIMIRGLCKVNRSSE 316

Query: 405 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELV-DSGVTPNIVCYNV 461
           A    ++        D  +Y  +I  LCR  K+ EA     +++ + G  PN + Y+ 
Sbjct: 317 AMELVEEARRRRCNPDVVMYTTVIDVLCREKKVDEACRVYRKMLEEPGCLPNSITYST 374



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 102/368 (27%), Positives = 172/368 (46%), Gaps = 46/368 (12%)

Query: 25  HVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERAN 84
            VP  V+Y +LI G C+      AY + +EM + G +P+  TY+ L+ G  +++  + A 
Sbjct: 50  EVPTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDAL 109

Query: 85  VLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDM-PQGKSVNEEFACG 143
            +  +L  R         +   ++ L+D LC+EG + E   +   M   G  +       
Sbjct: 110 RVFEQLVAR-----GFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYN 164

Query: 144 HMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQF 203
            +I   CR G+   A  ++  M + G +P +V+Y ++++G CK      AY LL +  + 
Sbjct: 165 SLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRK 224

Query: 204 GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTEL 263
           G  P+  T+  L++GLC E+ L  A  +L  M  K                         
Sbjct: 225 GLTPNVVTFTSLMDGLCRENRLSDAVHILGEMRRK------------------------- 259

Query: 264 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF 323
                      C P V T NT+++G+C++ ++EEA K    M+    C P+ V+F  +I 
Sbjct: 260 ----------SCSPTVYTYNTILDGYCRVNQLEEARKF---MLEEMDCPPNVVSFNIMIR 306

Query: 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCML-GIGV 382
           GL  V R  EA+ L+ +   +R  +P +V Y  V+  L R ++V+EA  V+  ML   G 
Sbjct: 307 GLCKVNRSSEAMELVEEAR-RRRCNPDVVMYTTVIDVLCREKKVDEACRVYRKMLEEPGC 365

Query: 383 VADSTTYA 390
           + +S TY+
Sbjct: 366 LPNSITYS 373



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 84/181 (46%), Gaps = 8/181 (4%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M+  C L+R+ +A+ L   M  +G  PNVV++T+L+ G CR   +  A  +  EMR    
Sbjct: 202 MNGFCKLARLDDAYDLLNQMTRKGLTPNVVTFTSLMDGLCRENRLSDAVHILGEMRRKSC 261

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P   TY+ ++ G  R   +E A   M        EE D   N  +F  ++  LC+    
Sbjct: 262 SPTVYTYNTILDGYCRVNQLEEARKFML-------EEMDCPPNVVSFNIMIRGLCKVNRS 314

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVM-RKRGLTPSLVSYNS 179
           +E   + E+  + +   +      +ID LCR  +   A RV   M  + G  P+ ++Y++
Sbjct: 315 SEAMELVEEARRRRCNPDVVMYTTVIDVLCREKKVDEACRVYRKMLEEPGCLPNSITYST 374

Query: 180 I 180
            
Sbjct: 375 F 375



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 63/116 (54%), Gaps = 1/116 (0%)

Query: 383 VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVH 442
           V  + TY  +I GLC++ +  EA    +++V+   I D + Y  +I G C+S K  +A+ 
Sbjct: 51  VPTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALR 110

Query: 443 FLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG-LNPDAVTWRIL 497
              +LV  G  P++V Y+ +IDG CK    +EA  +   M K+G   P+ VT+  L
Sbjct: 111 VFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSL 166


>gi|125582553|gb|EAZ23484.1| hypothetical protein OsJ_07180 [Oryza sativa Japonica Group]
          Length = 457

 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 115/408 (28%), Positives = 208/408 (50%), Gaps = 10/408 (2%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           CG  ++  A +L  +M      P+  +Y TLI G C  G    A  V DEM     +P+ 
Sbjct: 11  CGAGQLDAARRLVAEMPVE---PDAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCVPDV 67

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           +TY++L+    +    ++A     KL + M+ ++  + +   +  +V+ +C+EG V++  
Sbjct: 68  VTYTILLEATCKRSGYKQA----MKLLDEMR-DKGCTPDIVTYNVVVNGICQEGRVDDAI 122

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
              +++P         +   ++  LC + R   A  ++  M ++G  P++V++N ++  L
Sbjct: 123 EFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFL 182

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
           C+ G    A ++LE+  ++G  P+  +Y  L+   C +  ++KA   L  M+S+      
Sbjct: 183 CRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDI 242

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
              N  L ALC        + +L  +    C P +I+ NTVI+G  K G+ +EAL++LN+
Sbjct: 243 VSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNE 302

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
           MV+ K   PD +T++TI  GL    RI++A+    +V    G  P  V YNA++ GL + 
Sbjct: 303 MVS-KGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQ-DMGIRPNTVLYNAIILGLCKR 360

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI 412
           R    A ++F  M+G G + + +TY I+I+GL     + EA+   D++
Sbjct: 361 RETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDEL 408



 Score =  181 bits (460), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 113/453 (24%), Positives = 221/453 (48%), Gaps = 45/453 (9%)

Query: 30  VSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFK 89
           ++Y  ++ GYC  G++D A ++  EM    V P++ TY+ L+RG                
Sbjct: 1   MAYNAMVAGYCGAGQLDAARRLVAEMP---VEPDAYTYNTLIRG---------------- 41

Query: 90  LWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSL 149
                                   LC  G       + ++M + + V +      ++++ 
Sbjct: 42  ------------------------LCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEAT 77

Query: 150 CRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSE 209
           C+      A +++  MR +G TP +V+YN +V+G+C+ G    A + L+    +G  P+ 
Sbjct: 78  CKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNT 137

Query: 210 HTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVF 269
            +Y ++++GLC     E A +++  M  K         N+ +  LC        L VL  
Sbjct: 138 VSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQ 197

Query: 270 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG 329
           + +  C P+ ++ N +++ FCK  ++++A+  L+ MV+ + C PD V++ T++  L   G
Sbjct: 198 IPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVS-RGCYPDIVSYNTLLTALCRSG 256

Query: 330 RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTY 389
            +  A+ LL+Q +  +G +P +++YN V+ GL +  + +EA E+ N M+  G+  D  TY
Sbjct: 257 EVDVAVELLHQ-LKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITY 315

Query: 390 AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449
           + +  GLC  +++++A R +  +       +  +Y A+I GLC+  + H A+     ++ 
Sbjct: 316 STIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIG 375

Query: 450 SGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
           +G  PN   Y ++I+G     + +EA  +L E+
Sbjct: 376 NGCMPNESTYTILIEGLAYEGLIKEARDLLDEL 408



 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 104/323 (32%), Positives = 166/323 (51%), Gaps = 5/323 (1%)

Query: 175 VSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQF 234
           ++YN++V G C  G    A +L+ E       P  +TY  L+ GLCG      A  VL  
Sbjct: 1   MAYNAMVAGYCGAGQLDAARRLVAE---MPVEPDAYTYNTLIRGLCGRGRTANALAVLDE 57

Query: 235 MLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGR 294
           ML ++ V       I L A C      + + +L  M    C PD++T N V+NG C+ GR
Sbjct: 58  MLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGR 117

Query: 295 IEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTY 354
           +++A++ L ++     C P+ V++  ++ GL    R ++A  L+ + M Q+G  P +VT+
Sbjct: 118 VDDAIEFLKNL-PSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGE-MGQKGCPPNVVTF 175

Query: 355 NAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVW 414
           N ++  L R   VE A EV   +   G   +S +Y  ++   C+  ++D+A  F D +V 
Sbjct: 176 NMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVS 235

Query: 415 PSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKRE 474
                D   Y  ++  LCRSG++  AV  L++L D G  P ++ YN VIDG  K    +E
Sbjct: 236 RGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKE 295

Query: 475 AYQILREMRKNGLNPDAVTWRIL 497
           A ++L EM   GL PD +T+  +
Sbjct: 296 ALELLNEMVSKGLQPDIITYSTI 318



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 114/392 (29%), Positives = 190/392 (48%), Gaps = 5/392 (1%)

Query: 106 AFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVM 165
           A+  +V   C  G ++   R+  +MP      + +    +I  LC  GR   A  V+  M
Sbjct: 2   AYNAMVAGYCGAGQLDAARRLVAEMPVEP---DAYTYNTLIRGLCGRGRTANALAVLDEM 58

Query: 166 RKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDL 225
            +R   P +V+Y  ++   CK  G  +A +LL+E    G  P   TY V+V G+C E  +
Sbjct: 59  LRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRV 118

Query: 226 EKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTV 285
           + A + L+ + S      T   NI L+ LC  +   +   ++  M Q  C P+V+T N +
Sbjct: 119 DDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNML 178

Query: 286 INGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQR 345
           I+  C+ G +E AL+VL + +    C P+++++  ++       ++ +A+  L  +M  R
Sbjct: 179 ISFLCRKGLVEPALEVL-EQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFL-DLMVSR 236

Query: 346 GYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA 405
           G  P IV+YN +L  L R   V+ A E+ + +   G      +Y  VIDGL ++ +  EA
Sbjct: 237 GCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEA 296

Query: 406 KRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDG 465
               +++V      D   Y+ +  GLCR  +I +A+    ++ D G+ PN V YN +I G
Sbjct: 297 LELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILG 356

Query: 466 ACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            CK      A  +   M  NG  P+  T+ IL
Sbjct: 357 LCKRRETHSAIDLFAYMIGNGCMPNESTYTIL 388



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 90/375 (24%), Positives = 168/375 (44%), Gaps = 42/375 (11%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C  S   +A KL  +M+ +G  P++V+Y  +++G C+ G +D A +    +   G 
Sbjct: 74  LEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGC 133

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN+++Y+++++G+      E A  LM ++ ++         N   F  L+  LCR+G V
Sbjct: 134 EPNTVSYNIVLKGLCTAERWEDAEELMGEMGQK-----GCPPNVVTFNMLISFLCRKGLV 188

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                + E +P+        +   ++ + C+  +   A   + +M  RG  P +VSYN++
Sbjct: 189 EPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTL 248

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +  LC+ G    A +LL +    G  P   +Y  +++GL      ++A ++L  M+SK  
Sbjct: 249 LTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKG- 307

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                              QPD+IT +T+  G C+  RIE+A++
Sbjct: 308 ----------------------------------LQPDIITYSTIAAGLCREDRIEDAIR 333

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
                V      P+ V +  II GL        A++ L+  M   G  P   TY  ++ G
Sbjct: 334 AFGK-VQDMGIRPNTVLYNAIILGLCKRRETHSAID-LFAYMIGNGCMPNESTYTILIEG 391

Query: 361 LFRLRRVEEAKEVFN 375
           L     ++EA+++ +
Sbjct: 392 LAYEGLIKEARDLLD 406



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 111/235 (47%), Gaps = 5/235 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC    V  A ++   +   G  PN +SY  L+H +C+  +MD A    D M   G  P+
Sbjct: 182 LCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPD 241

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            ++Y+ L+  + R+ +V+ A  L+ +L ++      +S N      ++D L + G   E 
Sbjct: 242 IVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNT-----VIDGLTKAGKTKEA 296

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             +  +M       +      +   LCR  R   A R    ++  G+ P+ V YN+I+ G
Sbjct: 297 LELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILG 356

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
           LCK      A  L    I  G +P+E TY +L+EGL  E  +++AR +L  + S+
Sbjct: 357 LCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDELCSR 411



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 75/148 (50%), Gaps = 3/148 (2%)

Query: 352 VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDD 411
           + YNA++ G     +++ A+ +   M    V  D+ TY  +I GLC   +   A    D+
Sbjct: 1   MAYNAMVAGYCGAGQLDAARRLVAEM---PVEPDAYTYNTLIRGLCGRGRTANALAVLDE 57

Query: 412 IVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSM 471
           ++    + D   Y  +++  C+     +A+  L E+ D G TP+IV YNVV++G C+   
Sbjct: 58  MLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGR 117

Query: 472 KREAYQILREMRKNGLNPDAVTWRILDK 499
             +A + L+ +   G  P+ V++ I+ K
Sbjct: 118 VDDAIEFLKNLPSYGCEPNTVSYNIVLK 145



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 60/134 (44%), Gaps = 4/134 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R+ +A + F  ++  G  PN V Y  +I G C+  E   A  +F  M   G +PN
Sbjct: 322 LCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPN 381

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSL-CREGYVNE 122
             TY++L+ G+     ++ A  L+ +L  R  EE  L V+    A L   L C       
Sbjct: 382 ESTYTILIEGLAYEGLIKEARDLLDELCSRAGEEILLDVHLIDVAFLTTFLPCSNANGGP 441

Query: 123 VFRIAEDMPQGKSV 136
             R+    P+G  V
Sbjct: 442 FLRLP---PEGSPV 452


>gi|297793055|ref|XP_002864412.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310247|gb|EFH40671.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1245

 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 131/528 (24%), Positives = 235/528 (44%), Gaps = 41/528 (7%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC      ++  L   M+  G+ P +V+Y T++H YC+ G    A ++ D M   GV
Sbjct: 200 INVLCAEGSFKKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMNLKGV 259

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEED--------------------- 99
             +  TY++L+  + R+    +  +L+  + +RM    +                     
Sbjct: 260 NADVCTYNMLIHDLCRSNRSAKGYLLLRDMRKRMIHPNEVTYNTLLNGFSNEGKVLIARQ 319

Query: 100 ---------LSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC 150
                    LS N+  F  L+D    EG   E  ++   M     +  E + G ++D LC
Sbjct: 320 LLNEMLTFGLSPNHVTFNALIDGHISEGNFKEALKMFHMMEAKGLIGTEVSYGVLLDGLC 379

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
           ++     A      M++ G+    ++Y  ++ GLCK+G    A  +L E  + G  P   
Sbjct: 380 KNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVMLNEMSKDGIDPDIV 439

Query: 211 TYKVLVEGLCGESDLEKARKVL----QFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 266
           TY  L+ G C    L+ A++++    +  LS   +  + +     R  CL     E + +
Sbjct: 440 TYSALINGFCRVGRLKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCL----KETIRI 495

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
              M+     PD  T N ++   CK G++ EA + +  M +     P+AV+F  +I G  
Sbjct: 496 YEAMILEGNTPDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGI-LPNAVSFDCLINGYG 554

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
           + G   +A + ++  M + G+ P   TY ++L+GL +   +  A++    +  +    D+
Sbjct: 555 SSGEGLKAFS-VFDEMTKVGHHPTFFTYGSLLKGLCKGGHLIAAEKFLKSLQNVPAAVDT 613

Query: 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE 446
                +I  +C+S  LD+A   + ++V  S + D++ Y ++I GLCR GK   A+ F  E
Sbjct: 614 VMCNTLITAMCKSGNLDKAVSLFGEMVQRSILPDSFTYTSLISGLCRKGKTVIAILFAKE 673

Query: 447 LVDSG-VTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVT 493
               G + PN V Y   +DG  K    +  +   ++M K GL  D VT
Sbjct: 674 AEARGNLVPNKVMYTCFVDGMFKAGQWKAGFYFRQQMDKLGLTRDVVT 721



 Score =  181 bits (460), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 123/526 (23%), Positives = 241/526 (45%), Gaps = 41/526 (7%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC  +    A   +  MK  G     ++YT +I G C+ G +D A  + +EM   G+
Sbjct: 375 LDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVMLNEMSKDGI 434

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TYS L+ G  R   ++ A  ++ +++        LS N   ++ L+ + CR G +
Sbjct: 435 DPDIVTYSALINGFCRVGRLKTAKEIVCRIYRV-----GLSPNGIIYSTLIYNCCRMGCL 489

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E  RI E M    +  + F    ++ SLC++G+   A   +  M   G+ P+ VS++ +
Sbjct: 490 KETIRIYEAMILEGNTPDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNAVSFDCL 549

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++G    G  ++A+ + +E  + G+ P+  TY  L++GLC    L  A K L+ + +   
Sbjct: 550 INGYGSSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLIAAEKFLKSLQNVPA 609

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
              T +CN  + A+C   N  + +++   M+Q    PD  T  ++I+G C+ G+   A+ 
Sbjct: 610 AVDTVMCNTLITAMCKSGNLDKAVSLFGEMVQRSILPDSFTYTSLISGLCRKGKTVIAIL 669

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLN--------------------------------- 327
              +  A     P+ V +T  + G+                                   
Sbjct: 670 FAKEAEARGNLVPNKVMYTCFVDGMFKAGQWKAGFYFRQQMDKLGLTRDVVTTNAMIDGY 729

Query: 328 --VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 385
             +G+I++  +LL++ M  +   P + TYN +L G  + + V  +  ++  M+  G++ D
Sbjct: 730 SRMGKIEKTHDLLFE-MGNQNQGPNLTTYNILLHGYSKRKHVSTSFMLYRSMILSGILPD 788

Query: 386 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY 445
             T   +I G+CESN L+   +     +      D + +  +I   C +G+I+ A   + 
Sbjct: 789 KLTCYSIILGICESNMLEIGLKILKAFICRGVEVDRHTFNMLISKCCANGEINWAFDMVN 848

Query: 446 ELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 491
            +   G++ +    + ++    +    +E+  +L EM K G++P++
Sbjct: 849 VMTSLGISLDKNTCDAIVSVLNRNHRFQESRMVLHEMSKQGISPES 894



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 121/526 (23%), Positives = 242/526 (46%), Gaps = 48/526 (9%)

Query: 10  VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSV 69
           + ++ ++F  M   G  P+V +   ++    ++ E    +    EM    + P+  T+++
Sbjct: 139 IQDSLEIFRLMGLYGFNPSVYTCNAILGSIVKSCEDVSVWSFLKEMLKRKICPDVATFNI 198

Query: 70  LVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAED 129
           L+  +      ++++ LM K+     E+   +     +  ++   C++G       + + 
Sbjct: 199 LINVLCAEGSFKKSSYLMQKM-----EKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDH 253

Query: 130 MPQGKSVNEEFACGHM-IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
           M   K VN +    +M I  LCRS R+     ++  MRKR + P+ V+YN++++G    G
Sbjct: 254 M-NLKGVNADVCTYNMLIHDLCRSNRSAKGYLLLRDMRKRMIHPNEVTYNTLLNGFSNEG 312

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
             + A QLL E + FG  P+  T+  L++G   E + ++A K+   M +K  +       
Sbjct: 313 KVLIARQLLNEMLTFGLSPNHVTFNALIDGHISEGNFKEALKMFHMMEAKGLIGTEVSYG 372

Query: 249 IYLRALC---------------------------------LIKNPTELLNVLVFMLQTQC 275
           + L  LC                                 L KN    L+  V ML    
Sbjct: 373 VLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNG--FLDEAVVMLNEMS 430

Query: 276 Q----PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRI 331
           +    PD++T + +INGFC++GR++ A +++  +      +P+ + ++T+I+    +G +
Sbjct: 431 KDGIDPDIVTYSALINGFCRVGRLKTAKEIVCRIYRVGL-SPNGIIYSTLIYNCCRMGCL 489

Query: 332 QEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAI 391
           +E + + Y+ M   G +P   T+N ++  L +  +V EA+E   CM   G++ ++ ++  
Sbjct: 490 KETIRI-YEAMILEGNTPDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNAVSFDC 548

Query: 392 VIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 451
           +I+G   S +  +A   +D++    +    + Y +++KGLC+ G +  A  FL  L +  
Sbjct: 549 LINGYGSSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLIAAEKFLKSLQNVP 608

Query: 452 VTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
              + V  N +I   CK     +A  +  EM +  + PD+ T+  L
Sbjct: 609 AAVDTVMCNTLITAMCKSGNLDKAVSLFGEMVQRSILPDSFTYTSL 654



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 124/496 (25%), Positives = 215/496 (43%), Gaps = 8/496 (1%)

Query: 3    QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
             LC   +V EA +    M S G +PN VS+  LI+GY  +GE   A+ VFDEM   G  P
Sbjct: 517  SLCKAGKVAEAEEFMRCMTSDGILPNAVSFDCLINGYGSSGEGLKAFSVFDEMTKVGHHP 576

Query: 63   NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
               TY  L++G+ +   +  A   +  L     +    +V+      L+ ++C+ G +++
Sbjct: 577  TFFTYGSLLKGLCKGGHLIAAEKFLKSL-----QNVPAAVDTVMCNTLITAMCKSGNLDK 631

Query: 123  VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRG-LTPSLVSYNSIV 181
               +  +M Q   + + F    +I  LCR G+   A         RG L P+ V Y   V
Sbjct: 632  AVSLFGEMVQRSILPDSFTYTSLISGLCRKGKTVIAILFAKEAEARGNLVPNKVMYTCFV 691

Query: 182  HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
             G+ K G     +   ++  + G      T   +++G      +EK   +L  M ++   
Sbjct: 692  DGMFKAGQWKAGFYFRQQMDKLGLTRDVVTTNAMIDGYSRMGKIEKTHDLLFEMGNQNQG 751

Query: 242  DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
                  NI L      K+ +    +   M+ +   PD +T  ++I G C+   +E  LK+
Sbjct: 752  PNLTTYNILLHGYSKRKHVSTSFMLYRSMILSGILPDKLTCYSIILGICESNMLEIGLKI 811

Query: 302  LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
            L   +  +    D  TF  +I      G I  A +++  VM   G S    T +A++  L
Sbjct: 812  LKAFIC-RGVEVDRHTFNMLISKCCANGEINWAFDMV-NVMTSLGISLDKNTCDAIVSVL 869

Query: 362  FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
             R  R +E++ V + M   G+  +S  Y  +++GLC    +  A    ++++       N
Sbjct: 870  NRNHRFQESRMVLHEMSKQGISPESRKYIGLLNGLCRVGDIKTAFVVKEEMIAHKICPPN 929

Query: 422  YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
               +AM++ L + GK  EA   L  ++   + P I  +  ++   CK     EA ++   
Sbjct: 930  VAESAMVRALAKCGKADEASLLLRSMLKMKLVPTIASFTTLMHLFCKNGNVTEALELRVV 989

Query: 482  MRKNGLNPDAVTWRIL 497
            M   GL  D V++ +L
Sbjct: 990  MSNCGLKLDLVSYNVL 1005



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 107/440 (24%), Positives = 195/440 (44%), Gaps = 41/440 (9%)

Query: 103 NNAAFANLVDSLCREGYVN---EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGAS 159
           N + F  L+    REG +    E+FR+        SV   + C  ++ S+ +S  +    
Sbjct: 122 NPSVFDILIRVYLREGMIQDSLEIFRLMGLYGFNPSV---YTCNAILGSIVKSCEDVSVW 178

Query: 160 RVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGL 219
             +  M KR + P + ++N +++ LC  G   ++  L+++  + GY P+  TY  ++   
Sbjct: 179 SFLKEMLKRKICPDVATFNILINVLCAEGSFKKSSYLMQKMEKSGYAPTIVTYNTVLHWY 238

Query: 220 CGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDV 279
           C +   + A ++L  M  K         N+ +  LC      +   +L  M +    P+ 
Sbjct: 239 CKKGRFKAAIELLDHMNLKGVNADVCTYNMLIHDLCRSNRSAKGYLLLRDMRKRMIHPNE 298

Query: 280 ITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLL- 338
           +T NT++NGF   G++  A ++LN+M+     +P+ VTF  +I G ++ G  +EAL +  
Sbjct: 299 VTYNTLLNGFSNEGKVLIARQLLNEMLTFGL-SPNHVTFNALIDGHISEGNFKEALKMFH 357

Query: 339 ---------------------------------YQVMPQRGYSPGIVTYNAVLRGLFRLR 365
                                            Y  M + G   G +TY  ++ GL +  
Sbjct: 358 MMEAKGLIGTEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNG 417

Query: 366 RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYA 425
            ++EA  + N M   G+  D  TY+ +I+G C   +L  AK     I       +  +Y+
Sbjct: 418 FLDEAVVMLNEMSKDGIDPDIVTYSALINGFCRVGRLKTAKEIVCRIYRVGLSPNGIIYS 477

Query: 426 AMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN 485
            +I   CR G + E +     ++  G TP+   +NV++   CK     EA + +R M  +
Sbjct: 478 TLIYNCCRMGCLKETIRIYEAMILEGNTPDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSD 537

Query: 486 GLNPDAVTWRILDKLHGNRG 505
           G+ P+AV++  L   +G+ G
Sbjct: 538 GILPNAVSFDCLINGYGSSG 557



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 126/582 (21%), Positives = 229/582 (39%), Gaps = 88/582 (15%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    + EA  +  +M   G  P++V+Y+ LI+G+CR G +  A ++   +   G+
Sbjct: 410 IDGLCKNGFLDEAVVMLNEMSKDGIDPDIVTYSALINGFCRVGRLKTAKEIVCRIYRVGL 469

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN + YS L+    R   ++       +++E M  E + + ++  F  LV SLC+ G V
Sbjct: 470 SPNGIIYSTLIYNCCRMGCLKET----IRIYEAMILEGN-TPDHFTFNVLVTSLCKAGKV 524

Query: 121 NEV-----------------------------------FRIAEDMPQGKSVNEEFACGHM 145
            E                                    F + ++M +       F  G +
Sbjct: 525 AEAEEFMRCMTSDGILPNAVSFDCLINGYGSSGEGLKAFSVFDEMTKVGHHPTFFTYGSL 584

Query: 146 IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY 205
           +  LC+ G    A + +  ++        V  N+++  +CK G   +A  L  E +Q   
Sbjct: 585 LKGLCKGGHLIAAEKFLKSLQNVPAAVDTVMCNTLITAMCKSGNLDKAVSLFGEMVQRSI 644

Query: 206 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 265
           LP   TY  L+ GLC      K + V+  + +K+   R  +    +   C +    +   
Sbjct: 645 LPDSFTYTSLISGLC-----RKGKTVIAILFAKEAEARGNLVPNKVMYTCFVDGMFKAGQ 699

Query: 266 VLV-FMLQTQCQP-----DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
               F  + Q        DV+T N +I+G+ +MG+IE+   +L +M   +   P+  T+ 
Sbjct: 700 WKAGFYFRQQMDKLGLTRDVVTTNAMIDGYSRMGKIEKTHDLLFEM-GNQNQGPNLTTYN 758

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL---------------FRL 364
            ++ G      +  +  +LY+ M   G  P  +T  +++ G+               F  
Sbjct: 759 ILLHGYSKRKHVSTSF-MLYRSMILSGILPDKLTCYSIILGICESNMLEIGLKILKAFIC 817

Query: 365 RRVEEAKEVFN--------------------CMLGIGVVADSTTYAIVIDGLCESNQLDE 404
           R VE  +  FN                     M  +G+  D  T   ++  L  +++  E
Sbjct: 818 RGVEVDRHTFNMLISKCCANGEINWAFDMVNVMTSLGISLDKNTCDAIVSVLNRNHRFQE 877

Query: 405 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
           ++    ++       ++  Y  ++ GLCR G I  A     E++   + P  V  + ++ 
Sbjct: 878 SRMVLHEMSKQGISPESRKYIGLLNGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVR 937

Query: 465 GACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
              K     EA  +LR M K  L P   ++  L  L    GN
Sbjct: 938 ALAKCGKADEASLLLRSMLKMKLVPTIASFTTLMHLFCKNGN 979



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 94/374 (25%), Positives = 171/374 (45%), Gaps = 26/374 (6%)

Query: 6    GLSRVGE---AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
            G SR+G+    H L F+M ++   PN+ +Y  L+HGY +   +  ++ ++  M   G+LP
Sbjct: 728  GYSRMGKIEKTHDLLFEMGNQNQGPNLTTYNILLHGYSKRKHVSTSFMLYRSMILSGILP 787

Query: 63   NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
            + LT   ++ G+  +  +E    ++     R  E     V+   F  L+   C  G +N 
Sbjct: 788  DKLTCYSIILGICESNMLEIGLKILKAFICRGVE-----VDRHTFNMLISKCCANGEINW 842

Query: 123  VFRIAEDMPQ-GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
             F +   M   G S+++   C  ++  L R+ R   +  V++ M K+G++P    Y  ++
Sbjct: 843  AFDMVNVMTSLGISLDKN-TCDAIVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLL 901

Query: 182  HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGL--CGESDLEKARKVLQFMLSKK 239
            +GLC+ G    A+ + EE I     P       +V  L  CG++D  +A  +L+ ML  K
Sbjct: 902  NGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGKAD--EASLLLRSMLKMK 959

Query: 240  DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
             V         +   C   N TE L + V M     + D+++ N +I G C  G +  A 
Sbjct: 960  LVPTIASFTTLMHLFCKNGNVTEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMAIAF 1019

Query: 300  KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGY-----------S 348
            ++  +M    F A +  T+  ++ G+L+ G      +++ + +  RG+            
Sbjct: 1020 ELFEEMKRDGFLA-NVTTYKALVGGILSQGTEFSGTDIILKDLLARGFITAMSFNHMINF 1078

Query: 349  PGIVTYNAVLRGLF 362
            P  ++ NA L+ LF
Sbjct: 1079 PQQISVNAYLKHLF 1092



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 107/450 (23%), Positives = 182/450 (40%), Gaps = 79/450 (17%)

Query: 20   MKSRGHVP---NVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLR 76
            +KS  +VP   + V   TLI   C++G +D A  +F EM    +LP+S TY+ L+ G+ R
Sbjct: 601  LKSLQNVPAAVDTVMCNTLITAMCKSGNLDKAVSLFGEMVQRSILPDSFTYTSLISGLCR 660

Query: 77   TRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSV 136
                +   V+     +  +   +L  N   +   VD + + G     F   + M +    
Sbjct: 661  ----KGKTVIAILFAKEAEARGNLVPNKVMYTCFVDGMFKAGQWKAGFYFRQQMDKLGLT 716

Query: 137  NEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQL 196
             +      MID   R G+      +++ M  +   P+L +YN ++HG  K      ++ L
Sbjct: 717  RDVVTTNAMIDGYSRMGKIEKTHDLLFEMGNQNQGPNLTTYNILLHGYSKRKHVSTSFML 776

Query: 197  LEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQ-FMLSKKDVDRTRICNIYLRALC 255
                I  G LP + T   ++ G+C  + LE   K+L+ F+    +VDR    N+ +   C
Sbjct: 777  YRSMILSGILPDKLTCYSIILGICESNMLEIGLKILKAFICRGVEVDRHTF-NMLISKCC 835

Query: 256  L---IKNPTELLNVL----VFMLQTQCQPDVITLNT------------------------ 284
                I    +++NV+    + + +  C   V  LN                         
Sbjct: 836  ANGEINWAFDMVNVMTSLGISLDKNTCDAIVSVLNRNHRFQESRMVLHEMSKQGISPESR 895

Query: 285  ----VINGFCKMGRIEEALKVLNDMVAGKFCAPDAV------------------------ 316
                ++NG C++G I+ A  V  +M+A K C P+                          
Sbjct: 896  KYIGLLNGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGKADEASLLLRSM 955

Query: 317  ----------TFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 366
                      +FTT++      G + EAL L   VM   G    +V+YN ++ GL     
Sbjct: 956  LKMKLVPTIASFTTLMHLFCKNGNVTEALELRV-VMSNCGLKLDLVSYNVLITGLCAKGD 1014

Query: 367  VEEAKEVFNCMLGIGVVADSTTYAIVIDGL 396
            +  A E+F  M   G +A+ TTY  ++ G+
Sbjct: 1015 MAIAFELFEEMKRDGFLANVTTYKALVGGI 1044



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 95/231 (41%), Gaps = 37/231 (16%)

Query: 276 QPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEAL 335
            P V T N ++    K          L +M+  K C PD  TF  +I  L   G  +++ 
Sbjct: 155 NPSVYTCNAILGSIVKSCEDVSVWSFLKEMLKRKIC-PDVATFNILINVLCAEGSFKKS- 212

Query: 336 NLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG 395
           + L Q M + GY+P IVTYN VL    +  R + A E+ + M   GV AD  TY +    
Sbjct: 213 SYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMNLKGVNADVCTYNM---- 268

Query: 396 LCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN 455
                                          +I  LCRS +  +    L ++    + PN
Sbjct: 269 -------------------------------LIHDLCRSNRSAKGYLLLRDMRKRMIHPN 297

Query: 456 IVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
            V YN +++G         A Q+L EM   GL+P+ VT+  L   H + GN
Sbjct: 298 EVTYNTLLNGFSNEGKVLIARQLLNEMLTFGLSPNHVTFNALIDGHISEGN 348



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 42/75 (56%)

Query: 1    MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
            M   C    V EA +L   M + G   ++VSY  LI G C  G+M +A+++F+EM+  G 
Sbjct: 971  MHLFCKNGNVTEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMAIAFELFEEMKRDGF 1030

Query: 61   LPNSLTYSVLVRGVL 75
            L N  TY  LV G+L
Sbjct: 1031 LANVTTYKALVGGIL 1045



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 60/114 (52%), Gaps = 7/114 (6%)

Query: 5    CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
            CG  +  EA  L   M     VP + S+TTL+H +C+ G +  A ++   M +CG+  + 
Sbjct: 942  CG--KADEASLLLRSMLKMKLVPTIASFTTLMHLFCKNGNVTEALELRVVMSNCGLKLDL 999

Query: 65   LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREG 118
            ++Y+VL+ G+    D+  A    F+L+E MK +  L+ N   +  LV  +  +G
Sbjct: 1000 VSYNVLITGLCAKGDMAIA----FELFEEMKRDGFLA-NVTTYKALVGGILSQG 1048


>gi|356574876|ref|XP_003555569.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08610-like [Glycine max]
          Length = 589

 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 131/499 (26%), Positives = 221/499 (44%), Gaps = 51/499 (10%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           + +LC   ++  A +L   M  +  +P+  S T LI G+ R G +D A K  ++M   G 
Sbjct: 137 LQRLCSRGKLTVAARLIDVMARKSQIPHFPSCTNLIRGFIRKGLVDEACKTLNKMVMSGG 196

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P+++TY++++ G                                        LC+ G +
Sbjct: 197 VPDTITYNMVIGG----------------------------------------LCKNGRL 216

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                + EDM       +      +I  L   G  + A        ++G  P L++Y  +
Sbjct: 217 RSALDLVEDMSLSGCSPDAITYNSIIRCLFDKGNFNQAVNFWRDQLRKGCPPYLITYTVL 276

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +  +CK+ G  RA ++LE+    G  P   TY  LV     +   E    V+  +LS   
Sbjct: 277 IELVCKYCGAARALEVLEDMAMEGCYPDIVTYNSLVNLTSKQGKYEDTALVILNLLSHGM 336

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                  N  + +L       E+ ++L  M +T   P  +T N ++NG CK G ++ A+ 
Sbjct: 337 QPNAVTYNTLIHSLINHGYWDEVDDILKIMNETSSPPTHVTYNILLNGLCKSGLLDRAIS 396

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
             + MV  + C+PD +T+ T++ GL   G I E + LL  ++     SPG+VTYN V+ G
Sbjct: 397 FYSTMVT-ENCSPDIITYNTLLSGLCKEGFIDEGIQLL-NLLVGTSCSPGLVTYNIVIDG 454

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L RL  +E AKE+++ M+  G++ D  T++ +  G C ++QL+EA     ++        
Sbjct: 455 LARLGSMESAKELYDEMVDKGIIPDEITHSSLTWGFCRADQLEEATELLKEMSMKEQRIK 514

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
           N  Y  +I GLCR  K+  A+  L  +V     P+   Y+ +I       M +EA     
Sbjct: 515 NTAYRCVILGLCRQKKVDIAIQVLDLMVKGQCNPDERIYSALIKAVADGGMLKEA----- 569

Query: 481 EMRKNGLNPDAVTWRILDK 499
               N L+   + W+IL K
Sbjct: 570 ----NDLHQTLIKWKILKK 584



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 102/358 (28%), Positives = 169/358 (47%), Gaps = 4/358 (1%)

Query: 137 NEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQL 196
           N+E     ++  LC  G+   A+R++ VM ++   P   S  +++ G  + G    A + 
Sbjct: 128 NDEMTNNEILQRLCSRGKLTVAARLIDVMARKSQIPHFPSCTNLIRGFIRKGLVDEACKT 187

Query: 197 LEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM-LSKKDVDRTRICNIYLRALC 255
           L + +  G +P   TY +++ GLC    L  A  +++ M LS    D     N  +R L 
Sbjct: 188 LNKMVMSGGVPDTITYNMVIGGLCKNGRLRSALDLVEDMSLSGCSPDAITY-NSIIRCLF 246

Query: 256 LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA 315
              N  + +N     L+  C P +IT   +I   CK      AL+VL DM A + C PD 
Sbjct: 247 DKGNFNQAVNFWRDQLRKGCPPYLITYTVLIELVCKYCGAARALEVLEDM-AMEGCYPDI 305

Query: 316 VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN 375
           VT+ +++      G+ ++   ++  ++   G  P  VTYN ++  L      +E  ++  
Sbjct: 306 VTYNSLVNLTSKQGKYEDTALVILNLL-SHGMQPNAVTYNTLIHSLINHGYWDEVDDILK 364

Query: 376 CMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG 435
            M          TY I+++GLC+S  LD A  F+  +V  +   D   Y  ++ GLC+ G
Sbjct: 365 IMNETSSPPTHVTYNILLNGLCKSGLLDRAISFYSTMVTENCSPDIITYNTLLSGLCKEG 424

Query: 436 KIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVT 493
            I E +  L  LV +  +P +V YN+VIDG  +L     A ++  EM   G+ PD +T
Sbjct: 425 FIDEGIQLLNLLVGTSCSPGLVTYNIVIDGLARLGSMESAKELYDEMVDKGIIPDEIT 482



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 108/401 (26%), Positives = 179/401 (44%), Gaps = 8/401 (1%)

Query: 108 ANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRK 167
            NL+    R+G V+E  +    M     V +      +I  LC++GR   A  +V  M  
Sbjct: 169 TNLIRGFIRKGLVDEACKTLNKMVMSGGVPDTITYNMVIGGLCKNGRLRSALDLVEDMSL 228

Query: 168 RGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEK 227
            G +P  ++YNSI+  L   G   +A     + ++ G  P   TY VL+E +C      +
Sbjct: 229 SGCSPDAITYNSIIRCLFDKGNFNQAVNFWRDQLRKGCPPYLITYTVLIELVCKYCGAAR 288

Query: 228 ARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVIN 287
           A +VL+ M  +         N  +          +   V++ +L    QP+ +T NT+I+
Sbjct: 289 ALEVLEDMAMEGCYPDIVTYNSLVNLTSKQGKYEDTALVILNLLSHGMQPNAVTYNTLIH 348

Query: 288 GFCKMG---RIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ 344
                G    +++ LK++N+  +     P  VT+  ++ GL   G +  A++  Y  M  
Sbjct: 349 SLINHGYWDEVDDILKIMNETSS----PPTHVTYNILLNGLCKSGLLDRAISF-YSTMVT 403

Query: 345 RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 404
              SP I+TYN +L GL +   ++E  ++ N ++G        TY IVIDGL     ++ 
Sbjct: 404 ENCSPDIITYNTLLSGLCKEGFIDEGIQLLNLLVGTSCSPGLVTYNIVIDGLARLGSMES 463

Query: 405 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
           AK  +D++V    I D   ++++  G CR+ ++ EA   L E+           Y  VI 
Sbjct: 464 AKELYDEMVDKGIIPDEITHSSLTWGFCRADQLEEATELLKEMSMKEQRIKNTAYRCVIL 523

Query: 465 GACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
           G C+      A Q+L  M K   NPD   +  L K   + G
Sbjct: 524 GLCRQKKVDIAIQVLDLMVKGQCNPDERIYSALIKAVADGG 564



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 58/198 (29%), Positives = 96/198 (48%), Gaps = 1/198 (0%)

Query: 308 GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRV 367
             F   D +T   I+  L + G++  A  L+  VM ++   P   +   ++RG  R   V
Sbjct: 123 APFVQNDEMTNNEILQRLCSRGKLTVAARLI-DVMARKSQIPHFPSCTNLIRGFIRKGLV 181

Query: 368 EEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAM 427
           +EA +  N M+  G V D+ TY +VI GLC++ +L  A    +D+       D   Y ++
Sbjct: 182 DEACKTLNKMVMSGGVPDTITYNMVIGGLCKNGRLRSALDLVEDMSLSGCSPDAITYNSI 241

Query: 428 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
           I+ L   G  ++AV+F  + +  G  P ++ Y V+I+  CK      A ++L +M   G 
Sbjct: 242 IRCLFDKGNFNQAVNFWRDQLRKGCPPYLITYTVLIELVCKYCGAARALEVLEDMAMEGC 301

Query: 488 NPDAVTWRILDKLHGNRG 505
            PD VT+  L  L   +G
Sbjct: 302 YPDIVTYNSLVNLTSKQG 319



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 62/125 (49%)

Query: 382 VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAV 441
           V  D  T   ++  LC   +L  A R  D +   S I        +I+G  R G + EA 
Sbjct: 126 VQNDEMTNNEILQRLCSRGKLTVAARLIDVMARKSQIPHFPSCTNLIRGFIRKGLVDEAC 185

Query: 442 HFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLH 501
             L ++V SG  P+ + YN+VI G CK    R A  ++ +M  +G +PDA+T+  + +  
Sbjct: 186 KTLNKMVMSGGVPDTITYNMVIGGLCKNGRLRSALDLVEDMSLSGCSPDAITYNSIIRCL 245

Query: 502 GNRGN 506
            ++GN
Sbjct: 246 FDKGN 250



 Score = 41.2 bits (95), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 2/96 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C   ++ EA +L  +M  +       +Y  +I G CR  ++D+A +V D M      P+
Sbjct: 490 FCRADQLEEATELLKEMSMKEQRIKNTAYRCVILGLCRQKKVDIAIQVLDLMVKGQCNPD 549

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKL--WERMKEE 97
              YS L++ V     ++ AN L   L  W+ +K+E
Sbjct: 550 ERIYSALIKAVADGGMLKEANDLHQTLIKWKILKKE 585


>gi|255574927|ref|XP_002528370.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532238|gb|EEF34042.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 712

 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 137/500 (27%), Positives = 234/500 (46%), Gaps = 67/500 (13%)

Query: 7   LSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLT 66
           + ++ EA  +  +M++ G V        +I      G +D A KVFDEM    V+P+S +
Sbjct: 171 IGKLKEAVNMVIEMQNHGLVLKARILNFVIDVALALGFVDYAEKVFDEMLDRAVVPDSTS 230

Query: 67  YSVLVRGVLR---TRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           Y ++V G  R     DV+R        W +   E   +V+NA    ++ +   +G+VN  
Sbjct: 231 YKLMVVGYCRMGRISDVDR--------WLKDMIERGYAVDNATCTLMISTFSEKGFVNRA 282

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           F   +   Q                                    GL P+L++++S+++G
Sbjct: 283 FWYFKKWVQ-----------------------------------MGLNPNLINFSSLING 307

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LCK G   +A+++LEE ++ G+ P+ +T+  L++GLC +   EKA ++    L + D  +
Sbjct: 308 LCKIGSIKQAFEMLEEMVRKGWKPNVYTHTALIDGLCKKGWTEKAFRLF-LKLVRSDNYK 366

Query: 244 TRICNIYLRALCLIKN--PTELLN----VLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
               N+Y    C+I      E LN    +L+ M +    P+  T   +I+G CK G    
Sbjct: 367 P---NVYTYT-CMINGYCKEEKLNRAEMLLIRMKEQGLVPNTNTYTCLIDGHCKAGNFGR 422

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGI----VT 353
           A +++ D++  +   P+  T+  II GL   GR  EA  LL     +RG   G+    VT
Sbjct: 423 AYELM-DLMGKEGFTPNIFTYNAIIDGLCKKGRFPEAYKLL-----RRGLKSGLHADKVT 476

Query: 354 YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413
           Y  ++    R    ++A  +F+ M  +G+  D  TY ++I   C   +++E+++ +++ V
Sbjct: 477 YTILISEFCRQTDNKQALAIFSRMFKVGLQPDMHTYNVLIATFCRQKKVEESEKLFEEAV 536

Query: 414 WPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKR 473
               +     Y +MI G CR G I  A+ F +++ D G  P+ + Y  +I G C  S   
Sbjct: 537 GLGLLPTKETYTSMICGYCRDGHISSAIKFFHKMRDYGCKPDSITYGALISGLCNESKLD 596

Query: 474 EAYQILREMRKNGLNPDAVT 493
           EA Q+   M  NGL+P  VT
Sbjct: 597 EACQLYETMIDNGLSPCEVT 616



 Score =  168 bits (425), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 124/485 (25%), Positives = 217/485 (44%), Gaps = 43/485 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D    L  V  A K+F +M  R  VP+  SY  ++ GYCR G +    +   +M   G 
Sbjct: 200 IDVALALGFVDYAEKVFDEMLDRAVVPDSTSYKLMVVGYCRMGRISDVDRWLKDMIERGY 259

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             ++ T ++++        V RA    FK W +M     L+ N   F++L++ LC+ G +
Sbjct: 260 AVDNATCTLMISTFSEKGFVNRA-FWYFKKWVQM----GLNPNLINFSSLINGLCKIGSI 314

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRV-VYVMRKRGLTPSLVSYNS 179
            + F + E+M +       +    +ID LC+ G    A R+ + ++R     P++ +Y  
Sbjct: 315 KQAFEMLEEMVRKGWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVYTYTC 374

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           +++G CK     RA  LL    + G +P+ +TY  L++G C   +  +A +++       
Sbjct: 375 MINGYCKEEKLNRAEMLLIRMKEQGLVPNTNTYTCLIDGHCKAGNFGRAYELMD------ 428

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                                         M +    P++ T N +I+G CK GR  EA 
Sbjct: 429 -----------------------------LMGKEGFTPNIFTYNAIIDGLCKKGRFPEAY 459

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           K+L   +     A D VT+T +I         ++AL  ++  M + G  P + TYN ++ 
Sbjct: 460 KLLRRGLKSGLHA-DKVTYTILISEFCRQTDNKQAL-AIFSRMFKVGLQPDMHTYNVLIA 517

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
              R ++VEE++++F   +G+G++    TY  +I G C    +  A +F+  +       
Sbjct: 518 TFCRQKKVEESEKLFEEAVGLGLLPTKETYTSMICGYCRDGHISSAIKFFHKMRDYGCKP 577

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           D+  Y A+I GLC   K+ EA      ++D+G++P  V    +    CK      A  IL
Sbjct: 578 DSITYGALISGLCNESKLDEACQLYETMIDNGLSPCEVTRVTLAYEYCKQGDSATAMIIL 637

Query: 480 REMRK 484
             + K
Sbjct: 638 ERLEK 642



 Score =  151 bits (381), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 107/443 (24%), Positives = 201/443 (45%), Gaps = 50/443 (11%)

Query: 10  VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSV 69
           V  A   F      G  PN++++++LI+G C+ G +  A+++ +EM   G  PN  T++ 
Sbjct: 279 VNRAFWYFKKWVQMGLNPNLINFSSLINGLCKIGSIKQAFEMLEEMVRKGWKPNVYTHTA 338

Query: 70  LVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAED 129
           L+ G+ +    E+A    F+L+ ++   ++   N   +  +++  C+E  +N    +   
Sbjct: 339 LIDGLCKKGWTEKA----FRLFLKLVRSDNYKPNVYTYTCMINGYCKEEKLNRAEMLLIR 394

Query: 130 MPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG 189
           M +   V        +ID  C++G    A  ++ +M K G TP++ +YN+I+ GLCK G 
Sbjct: 395 MKEQGLVPNTNTYTCLIDGHCKAGNFGRAYELMDLMGKEGFTPNIFTYNAIIDGLCKKGR 454

Query: 190 CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNI 249
              AY+LL  G++ G    + TY +L+   C ++D ++A                     
Sbjct: 455 FPEAYKLLRRGLKSGLHADKVTYTILISEFCRQTDNKQA--------------------- 493

Query: 250 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK 309
                         L +   M +   QPD+ T N +I  FC+  ++EE+ K+  + V G 
Sbjct: 494 --------------LAIFSRMFKVGLQPDMHTYNVLIATFCRQKKVEESEKLFEEAV-GL 538

Query: 310 FCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEE 369
              P   T+T++I G    G I  A+   ++ M   G  P  +TY A++ GL    +++E
Sbjct: 539 GLLPTKETYTSMICGYCRDGHISSAIKFFHK-MRDYGCKPDSITYGALISGLCNESKLDE 597

Query: 370 AKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI---VWPSNIHDNYVYAA 426
           A +++  M+  G+     T   +    C+      A    + +   +W   ++       
Sbjct: 598 ACQLYETMIDNGLSPCEVTRVTLAYEYCKQGDSATAMIILERLEKKLWIRTVN------T 651

Query: 427 MIKGLCRSGKIHEAVHFLYELVD 449
           +I+ LC   K+  A  F ++L+D
Sbjct: 652 LIRKLCSEKKVGVAALFFHKLLD 674



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 100/408 (24%), Positives = 183/408 (44%), Gaps = 21/408 (5%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEM-RHCG 59
           ++ LC +  + +A ++  +M  +G  PNV ++T LI G C+ G  + A+++F ++ R   
Sbjct: 305 INGLCKIGSIKQAFEMLEEMVRKGWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSDN 364

Query: 60  VLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGY 119
             PN  TY+ ++ G  +   + RA +L+     RMK E+ L  N   +  L+D  C+ G 
Sbjct: 365 YKPNVYTYTCMINGYCKEEKLNRAEMLLI----RMK-EQGLVPNTNTYTCLIDGHCKAGN 419

Query: 120 VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
               + + + M +       F    +ID LC+ GR   A +++    K GL    V+Y  
Sbjct: 420 FGRAYELMDLMGKEGFTPNIFTYNAIIDGLCKKGRFPEAYKLLRRGLKSGLHADKVTYTI 479

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQ-----F 234
           ++   C+     +A  +     + G  P  HTY VL+   C +  +E++ K+ +      
Sbjct: 480 LISEFCRQTDNKQALAIFSRMFKVGLQPDMHTYNVLIATFCRQKKVEESEKLFEEAVGLG 539

Query: 235 MLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGR 294
           +L  K+   + IC       C   + +  +     M    C+PD IT   +I+G C   +
Sbjct: 540 LLPTKETYTSMIC-----GYCRDGHISSAIKFFHKMRDYGCKPDSITYGALISGLCNESK 594

Query: 295 IEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTY 354
           ++EA ++   M+     +P  VT  T+ +     G    A+ +L ++  +      I T 
Sbjct: 595 LDEACQLYETMIDNGL-SPCEVTRVTLAYEYCKQGDSATAMIILERLEKKL----WIRTV 649

Query: 355 NAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQL 402
           N ++R L   ++V  A   F+ +L   +  D  T A       ESN+ 
Sbjct: 650 NTLIRKLCSEKKVGVAALFFHKLLDKDLNVDRITLAAFTTACYESNKF 697



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 88/353 (24%), Positives = 159/353 (45%), Gaps = 1/353 (0%)

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
           M+ S    G+   A  +V  M+  GL       N ++      G    A ++ +E +   
Sbjct: 164 MVRSFSEIGKLKEAVNMVIEMQNHGLVLKARILNFVIDVALALGFVDYAEKVFDEMLDRA 223

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL 264
            +P   +YK++V G C    +    + L+ M+ +        C + +             
Sbjct: 224 VVPDSTSYKLMVVGYCRMGRISDVDRWLKDMIERGYAVDNATCTLMISTFSEKGFVNRAF 283

Query: 265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 324
                 +Q    P++I  +++ING CK+G I++A ++L +MV  K   P+  T T +I G
Sbjct: 284 WYFKKWVQMGLNPNLINFSSLINGLCKIGSIKQAFEMLEEMVR-KGWKPNVYTHTALIDG 342

Query: 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 384
           L   G  ++A  L  +++    Y P + TY  ++ G  +  ++  A+ +   M   G+V 
Sbjct: 343 LCKKGWTEKAFRLFLKLVRSDNYKPNVYTYTCMINGYCKEEKLNRAEMLLIRMKEQGLVP 402

Query: 385 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFL 444
           ++ TY  +IDG C++     A    D +       + + Y A+I GLC+ G+  EA   L
Sbjct: 403 NTNTYTCLIDGHCKAGNFGRAYELMDLMGKEGFTPNIFTYNAIIDGLCKKGRFPEAYKLL 462

Query: 445 YELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
              + SG+  + V Y ++I   C+ +  ++A  I   M K GL PD  T+ +L
Sbjct: 463 RRGLKSGLHADKVTYTILISEFCRQTDNKQALAIFSRMFKVGLQPDMHTYNVL 515



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 131/280 (46%), Gaps = 11/280 (3%)

Query: 235 MLSKKDVDR-TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMG 293
            L+  ++DR T +    +R+   I    E +N+++ M           LN VI+    +G
Sbjct: 148 FLNNDNLDRATEVMQCMVRSFSEIGKLKEAVNMVIEMQNHGLVLKARILNFVIDVALALG 207

Query: 294 RIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVT 353
            ++ A KV ++M+  +   PD+ ++  ++ G   +GRI +    L + M +RGY+    T
Sbjct: 208 FVDYAEKVFDEML-DRAVVPDSTSYKLMVVGYCRMGRISDVDRWL-KDMIERGYAVDNAT 265

Query: 354 YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413
              ++        V  A   F   + +G+  +   ++ +I+GLC+   + +A    +++V
Sbjct: 266 CTLMISTFSEKGFVNRAFWYFKKWVQMGLNPNLINFSSLINGLCKIGSIKQAFEMLEEMV 325

Query: 414 ---WPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS-GVTPNIVCYNVVIDGACKL 469
              W  N+   Y + A+I GLC+ G   +A     +LV S    PN+  Y  +I+G CK 
Sbjct: 326 RKGWKPNV---YTHTALIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVYTYTCMINGYCKE 382

Query: 470 SMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGNDFG 509
                A  +L  M++ GL P+  T+  L   H   GN FG
Sbjct: 383 EKLNRAEMLLIRMKEQGLVPNTNTYTCLIDGHCKAGN-FG 421


>gi|308080398|ref|NP_001183938.1| PPR-814a [Zea mays]
 gi|223929924|gb|ACN24620.1| PPR-814a [Zea mays]
          Length = 814

 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 125/510 (24%), Positives = 238/510 (46%), Gaps = 45/510 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHV--PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHC 58
           +  LC   + G+A  L   M   G V  P+VV+Y T+I G+ + G+++ A  +F EM   
Sbjct: 189 LKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQR 248

Query: 59  GVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREG 118
           G+ P+ +TYS +V  + + R +++A   +     R    + +  NN  + NL+      G
Sbjct: 249 GIPPDFVTYSSVVHALCKARAMDKAEAFL-----RQMVNKGVLPNNWTYNNLIYGYSSTG 303

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
              E  R+ ++M +   + +      ++ SLC+ G+   A  V   M  +G  P + SYN
Sbjct: 304 QWKEAVRVFKEMRRQSILPDVVTFNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYN 363

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
            +++G    G  +    L +  +  G  P   T+ VL++       L+KA  +   M   
Sbjct: 364 IMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDH 423

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
                                                +P+V+T  TVI   C++G++++A
Sbjct: 424 G-----------------------------------VKPNVLTYTTVIAALCRIGKMDDA 448

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
           ++  N M+  +  APD   +  +I G    G + +A  L+ ++M   G    IV +++++
Sbjct: 449 MEKFNQMI-DQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIM-NNGMHLDIVLFSSII 506

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
             L +L RV +A+ +F+  + +G+   +  Y++++DG C   ++++A R +D +V     
Sbjct: 507 NNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIE 566

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI 478
            ++ VY  ++ G C+ G+I E +    E++  G+ P+ + YN++IDG  +      A   
Sbjct: 567 PNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVK 626

Query: 479 LREMRKNGLNPDAVTWRI-LDKLHGNRGND 507
             EM ++G+  +  T+ I L  L  NR  D
Sbjct: 627 FHEMTESGIAMNKCTYSIVLRGLFKNRCFD 656



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 125/495 (25%), Positives = 238/495 (48%), Gaps = 21/495 (4%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC    + +A      M ++G +PN  +Y  LI+GY  TG+   A +VF EMR   +LP+
Sbjct: 264 LCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPD 323

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVN-----NAAFANLVDSLCREG 118
            +T+++L+  + +   ++ A  +   +  + +  +  S N      A    LVD      
Sbjct: 324 VVTFNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVD------ 377

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGH-MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
            + ++F    D+  G  +       + +I +    G    A  +   MR  G+ P++++Y
Sbjct: 378 -MTDLF----DLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPNVLTY 432

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVL-QFML 236
            +++  LC+ G    A +   + I  G  P ++ Y  L++G C    L KA++++ + M 
Sbjct: 433 TTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMN 492

Query: 237 SKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIE 296
           +   +D     +I +  LC +    +  N+    +     P  +  + +++G+C +G++E
Sbjct: 493 NGMHLDIVLFSSI-INNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKME 551

Query: 297 EALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
           +AL+V + MV+     P+ V + T++ G   +GRI E L+ L++ M Q+G  P  + YN 
Sbjct: 552 KALRVFDAMVSAGI-EPNDVVYGTLVNGYCKIGRIDEGLS-LFREMLQKGIKPSTILYNI 609

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416
           ++ GLF   R   AK  F+ M   G+  +  TY+IV+ GL ++   DEA   + ++   +
Sbjct: 610 IIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMN 669

Query: 417 NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAY 476
              D      MI G+ ++ ++ EA      +  SG+ P +V Y+++I    K  +  EA 
Sbjct: 670 VKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAE 729

Query: 477 QILREMRKNGLNPDA 491
            +   M+  G  PD+
Sbjct: 730 DMFSSMQNAGCEPDS 744



 Score =  168 bits (425), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 125/493 (25%), Positives = 229/493 (46%), Gaps = 15/493 (3%)

Query: 13  AHKLFFDMKSRGHVPNVVS-----YTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTY 67
           A  LF    SR   P V+S     Y  L+    R    ++A   F ++   G+  + +  
Sbjct: 90  AVALFNRAASRAQGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIA 149

Query: 68  SVLVRGVLRTRDVERA-NVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRI 126
           + L++G    +  + A ++L+ +  E     +  S     ++ L+ SLC +G   +   +
Sbjct: 150 NHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFS-----YSILLKSLCDQGKSGQADDL 204

Query: 127 AEDMPQGKSV--NEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
              M +G +V   +  A   +ID   + G  + A  +   M +RG+ P  V+Y+S+VH L
Sbjct: 205 LRMMAEGGAVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHAL 264

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
           CK     +A   L + +  G LP+  TY  L+ G       ++A +V + M  +  +   
Sbjct: 265 CKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDV 324

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
              N+ + +LC      E  +V   M      PDV + N ++NG+   G + + +  L D
Sbjct: 325 VTFNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVD-MTDLFD 383

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
           ++ G   AP   TF  +I    N G + +A+ +++  M   G  P ++TY  V+  L R+
Sbjct: 384 LMLGDGIAPVICTFNVLIKAYANCGMLDKAM-IIFNEMRDHGVKPNVLTYTTVIAALCRI 442

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY 424
            ++++A E FN M+  GV  D   Y  +I G C    L +AK    +I+      D  ++
Sbjct: 443 GKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVLF 502

Query: 425 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484
           +++I  LC+ G++ +A +     V+ G+ P  V Y++++DG C +    +A ++   M  
Sbjct: 503 SSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVS 562

Query: 485 NGLNPDAVTWRIL 497
            G+ P+ V +  L
Sbjct: 563 AGIEPNDVVYGTL 575



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 117/488 (23%), Positives = 224/488 (45%), Gaps = 7/488 (1%)

Query: 10  VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSV 69
           V +A  LF +M  RG  P+ V+Y++++H  C+   MD A     +M + GVLPN+ TY+ 
Sbjct: 235 VNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNN 294

Query: 70  LVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAED 129
           L+ G   T   + A V +FK   R     D+      F  L+ SLC+ G + E   + + 
Sbjct: 295 LIYGYSSTGQWKEA-VRVFKEMRRQSILPDV----VTFNMLMGSLCKYGKIKEARDVFDT 349

Query: 130 MPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG 189
           M       + F+   M++     G     + +  +M   G+ P + ++N ++      G 
Sbjct: 350 MAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGM 409

Query: 190 CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNI 249
             +A  +  E    G  P+  TY  ++  LC    ++ A +    M+ +         + 
Sbjct: 410 LDKAMIIFNEMRDHGVKPNVLTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHC 469

Query: 250 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK 309
            ++  C   +  +   ++  ++      D++  +++IN  CK+GR+ +A  +  D+    
Sbjct: 470 LIQGFCTHGSLLKAKELISEIMNNGMHLDIVLFSSIINNLCKLGRVMDAQNIF-DLTVNV 528

Query: 310 FCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEE 369
              P AV ++ ++ G   VG++++AL + +  M   G  P  V Y  ++ G  ++ R++E
Sbjct: 529 GLHPTAVVYSMLMDGYCLVGKMEKALRV-FDAMVSAGIEPNDVVYGTLVNGYCKIGRIDE 587

Query: 370 AKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIK 429
              +F  ML  G+   +  Y I+IDGL E+ +   AK  + ++       +   Y+ +++
Sbjct: 588 GLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLR 647

Query: 430 GLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNP 489
           GL ++    EA+    EL    V  +I+  N +I G  +     EA  +   + ++GL P
Sbjct: 648 GLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVP 707

Query: 490 DAVTWRIL 497
             VT+ I+
Sbjct: 708 CVVTYSIM 715



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 119/506 (23%), Positives = 223/506 (44%), Gaps = 42/506 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M  LC   ++ EA  +F  M  +G  P+V SY  +++GY   G +     +FD M   G+
Sbjct: 331 MGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGI 390

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P   T++VL++       +++A ++  ++      +  +  N   +  ++ +LCR G +
Sbjct: 391 APVICTFNVLIKAYANCGMLDKAMIIFNEM-----RDHGVKPNVLTYTTVIAALCRIGKM 445

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           ++       M       +++A   +I   C  G    A  ++  +   G+   +V ++SI
Sbjct: 446 DDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVLFSSI 505

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++ LCK G  M A  + +  +  G  P+   Y +L++G C    +EKA +V   M+S   
Sbjct: 506 INNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVS--- 562

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                              +P+ +   T++NG+CK+GRI+E L 
Sbjct: 563 --------------------------------AGIEPNDVVYGTLVNGYCKIGRIDEGLS 590

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +  +M+  K   P  + +  II GL   GR   A  + +  M + G +    TY+ VLRG
Sbjct: 591 LFREMLQ-KGIKPSTILYNIIIDGLFEAGRTVPA-KVKFHEMTESGIAMNKCTYSIVLRG 648

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           LF+ R  +EA  +F  +  + V  D  T   +I G+ ++ +++EAK  +  I     +  
Sbjct: 649 LFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPC 708

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              Y+ MI  L + G + EA      + ++G  P+    N V+    K +    A   L 
Sbjct: 709 VVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAGAYLS 768

Query: 481 EMRKNGLNPDAVTWRILDKLHGNRGN 506
           ++ +   + + +T  +L  L  ++G 
Sbjct: 769 KIDERNFSLEHLTTMLLVDLFSSKGT 794



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 127/238 (53%), Gaps = 3/238 (1%)

Query: 270 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG 329
           +L+T  + D+I  N ++ GFC+  R +EAL +L        C PD  +++ ++  L + G
Sbjct: 137 LLRTGLRVDIIIANHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQG 196

Query: 330 RIQEALNLLYQVMPQRGY--SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADST 387
           +  +A +LL ++M + G   SP +V YN V+ G F+   V +A ++F  M+  G+  D  
Sbjct: 197 KSGQADDLL-RMMAEGGAVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFV 255

Query: 388 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYEL 447
           TY+ V+  LC++  +D+A+ F   +V    + +N+ Y  +I G   +G+  EAV    E+
Sbjct: 256 TYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEM 315

Query: 448 VDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
               + P++V +N+++   CK    +EA  +   M   G NPD  ++ I+   +  +G
Sbjct: 316 RRQSILPDVVTFNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKG 373



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 5/117 (4%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           RV EA  LF  +   G VP VV+Y+ +I    + G ++ A  +F  M++ G  P+S   +
Sbjct: 689 RVEEAKDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLN 748

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFR 125
            +VR +L+  ++ RA   + K+ ER     + S+ +     LVD    +G   E  R
Sbjct: 749 HVVRELLKKNEIVRAGAYLSKIDER-----NFSLEHLTTMLLVDLFSSKGTCREHIR 800


>gi|357130063|ref|XP_003566676.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 822

 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 139/535 (25%), Positives = 239/535 (44%), Gaps = 45/535 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDM--KSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHC 58
           +  LC  SR   A  L   M  KS G  PNVVSY T+IHG+ R GE+  A  +F EM   
Sbjct: 197 LKSLCEDSRSQRALDLLHTMVKKSGGCSPNVVSYNTVIHGFFREGEVSKACNLFHEMMQQ 256

Query: 59  GVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREG 118
           GV+P+ +TYS  +  + + R +++A +++ ++     E + ++ N      ++      G
Sbjct: 257 GVVPDVVTYSSYIDALCKARAMDKAELVLRQMISNGFEPDKVTYNC-----MIHGYSILG 311

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
              E   +  +M +   + + F C   + SLC+ G++  A+     M  +G  P LV+Y+
Sbjct: 312 QWKETAGMFREMTRRGLMPDIFTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPDLVTYS 371

Query: 179 SIVHGLCKHG----------------------------------GCMRAYQLLEEGIQ-F 203
            ++HG    G                                  G M    L+   +Q  
Sbjct: 372 VLLHGYAAEGYVVDMLNLFNSMEGNGIVADHSVYNILIDAYGKRGMMDEAMLIFTQMQER 431

Query: 204 GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTEL 263
           G +P   TY  ++        L  A      M++      T + N  ++  C+  N  + 
Sbjct: 432 GVMPDAWTYGTVIAAFSRMGRLADAMDKFNQMIAMGLKPDTIVYNSLIQGFCMHGNLVKA 491

Query: 264 LNVLVFMLQTQC-QPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTII 322
             ++  M+     +P+ +  N++IN  CK GR+ EA  +  D+V      PD +TF ++I
Sbjct: 492 KELISEMMSRGIPRPNTVFFNSIINSLCKEGRVVEAQDIF-DLVIHIGERPDVITFNSLI 550

Query: 323 FGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGV 382
            G   VG++++A  +L   M   G  P +VTY+A+L G  R  R+++   +F  ML  GV
Sbjct: 551 DGYGLVGKMEKAFGVL-DAMISVGIEPDVVTYSALLDGYCRNGRIDDGLILFREMLSKGV 609

Query: 383 VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVH 442
              + TY I++ GL    +   AK+   +++      D      ++ GLCR+    EA+ 
Sbjct: 610 KPTTITYGIILHGLFNDGRTVGAKKMCHEMIESGTTMDISTCGIILGGLCRNNCDDEAIA 669

Query: 443 FLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
              +L    V  NI   N +ID   K+  + EA ++   +   GL P+A T+ ++
Sbjct: 670 LFKKLGAMNVKFNIAIINTMIDAMYKVRKREEANELFDSISATGLVPNASTYGVM 724



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 137/569 (24%), Positives = 243/569 (42%), Gaps = 71/569 (12%)

Query: 6   GLSRVGEAHK---LFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           G  R GE  K   LF +M  +G VP+VV+Y++ I   C+   MD A  V  +M   G  P
Sbjct: 236 GFFREGEVSKACNLFHEMMQQGVVPDVVTYSSYIDALCKARAMDKAELVLRQMISNGFEP 295

Query: 63  NSLTYSVLVRG------------VLR--TR-----DVERANVLMFKLWERMKEEEDLSVN 103
           + +TY+ ++ G            + R  TR     D+   N  M  L +  K +E     
Sbjct: 296 DKVTYNCMIHGYSILGQWKETAGMFREMTRRGLMPDIFTCNSYMSSLCKHGKSKEAAEFF 355

Query: 104 NA-----------AFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRS 152
           ++            ++ L+     EGYV ++  +   M     V +      +ID+  + 
Sbjct: 356 DSMAAKGHKPDLVTYSVLLHGYAAEGYVVDMLNLFNSMEGNGIVADHSVYNILIDAYGKR 415

Query: 153 GRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTY 212
           G    A  +   M++RG+ P   +Y +++    + G    A     + I  G  P    Y
Sbjct: 416 GMMDEAMLIFTQMQERGVMPDAWTYGTVIAAFSRMGRLADAMDKFNQMIAMGLKPDTIVY 475

Query: 213 KVLVEGLCGESDLEKARKVLQFMLSKK-DVDRTRICNIYLRALCLIKNPTELLNVLVFML 271
             L++G C   +L KA++++  M+S+      T   N  + +LC      E  ++   ++
Sbjct: 476 NSLIQGFCMHGNLVKAKELISEMMSRGIPRPNTVFFNSIINSLCKEGRVVEAQDIFDLVI 535

Query: 272 QTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRI 331
               +PDVIT N++I+G+  +G++E+A  VL+ M++     PD VT++ ++ G    GRI
Sbjct: 536 HIGERPDVITFNSLIDGYGLVGKMEKAFGVLDAMISVGI-EPDVVTYSALLDGYCRNGRI 594

Query: 332 QEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAI 391
            + L +L++ M  +G  P  +TY  +L GLF   R   AK++ + M+  G   D +T  I
Sbjct: 595 DDGL-ILFREMLSKGVKPTTITYGIILHGLFNDGRTVGAKKMCHEMIESGTTMDISTCGI 653

Query: 392 VIDGLCESN-----------------------------------QLDEAKRFWDDIVWPS 416
           ++ GLC +N                                   + +EA   +D I    
Sbjct: 654 ILGGLCRNNCDDEAIALFKKLGAMNVKFNIAIINTMIDAMYKVRKREEANELFDSISATG 713

Query: 417 NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAY 476
            + +   Y  MI  L + G + EA +    +  SG  P+    N +I    +     +A 
Sbjct: 714 LVPNASTYGVMITNLLKEGSVEEADNMFSLMEKSGCAPSSRLLNNIIRVLLEKGEISKAG 773

Query: 477 QILREMRKNGLNPDAVTWRILDKLHGNRG 505
             L ++    ++ +A T  ++  L   +G
Sbjct: 774 NYLSKVDGKTISLEASTASLMLSLFSRKG 802



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 119/517 (23%), Positives = 220/517 (42%), Gaps = 79/517 (15%)

Query: 19  DMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTR 78
           + + R  +P V +Y  L+   CR     V + +F      G+  + +  ++L++ +   +
Sbjct: 109 EARPRVALPTVCTYNILMDCCCRAHRPTVGFALFGRFLKTGLKTDVIVANILLKCLCHAK 168

Query: 79  DVERA-NVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVN 137
             + A NVL+ ++ E   E + +S +                                  
Sbjct: 169 RSDDAVNVLLHRMPELGVEPDTISYST--------------------------------- 195

Query: 138 EEFACGHMIDSLCRSGRNHGASRVVYVMRKR--GLTPSLVSYNSIVHGLCKHGGCMRAYQ 195
                  ++ SLC   R+  A  +++ M K+  G +P++VSYN+++HG  + G   +A  
Sbjct: 196 -------VLKSLCEDSRSQRALDLLHTMVKKSGGCSPNVVSYNTVIHGFFREGEVSKACN 248

Query: 196 LLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALC 255
           L  E +Q G +P   TY   ++ LC    ++KA  VL+ M+S          N  +    
Sbjct: 249 LFHEMMQQGVVPDVVTYSSYIDALCKARAMDKAELVLRQMISNGFEPDKVTYNCMIHGYS 308

Query: 256 LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA 315
           ++    E   +   M +    PD+ T N+ ++  CK G+ +EA +  + M A K   PD 
Sbjct: 309 ILGQWKETAGMFREMTRRGLMPDIFTCNSYMSSLCKHGKSKEAAEFFDSM-AAKGHKPDL 367

Query: 316 VTFTTIIFGLLNVGRIQEALN----------------------------------LLYQV 341
           VT++ ++ G    G + + LN                                  L++  
Sbjct: 368 VTYSVLLHGYAAEGYVVDMLNLFNSMEGNGIVADHSVYNILIDAYGKRGMMDEAMLIFTQ 427

Query: 342 MPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ 401
           M +RG  P   TY  V+    R+ R+ +A + FN M+ +G+  D+  Y  +I G C    
Sbjct: 428 MQERGVMPDAWTYGTVIAAFSRMGRLADAMDKFNQMIAMGLKPDTIVYNSLIQGFCMHGN 487

Query: 402 LDEAKRFWDDIVWPSNIHDNYV-YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYN 460
           L +AK    +++       N V + ++I  LC+ G++ EA      ++  G  P+++ +N
Sbjct: 488 LVKAKELISEMMSRGIPRPNTVFFNSIINSLCKEGRVVEAQDIFDLVIHIGERPDVITFN 547

Query: 461 VVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            +IDG   +    +A+ +L  M   G+ PD VT+  L
Sbjct: 548 SLIDGYGLVGKMEKAFGVLDAMISVGIEPDVVTYSAL 584



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/310 (28%), Positives = 147/310 (47%), Gaps = 19/310 (6%)

Query: 206 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLS--------KKDVDRTRICNIYLRALCLI 257
           LP+  TY +L++  C        R  + F L         K DV    + NI L+ LC  
Sbjct: 116 LPTVCTYNILMDCCC-----RAHRPTVGFALFGRFLKTGLKTDV---IVANILLKCLCHA 167

Query: 258 KNPTELLNVLVF-MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKF-CAPDA 315
           K   + +NVL+  M +   +PD I+ +TV+   C+  R + AL +L+ MV     C+P+ 
Sbjct: 168 KRSDDAVNVLLHRMPELGVEPDTISYSTVLKSLCEDSRSQRALDLLHTMVKKSGGCSPNV 227

Query: 316 VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN 375
           V++ T+I G    G + +A NL +++M Q+G  P +VTY++ +  L + R +++A+ V  
Sbjct: 228 VSYNTVIHGFFREGEVSKACNLFHEMM-QQGVVPDVVTYSSYIDALCKARAMDKAELVLR 286

Query: 376 CMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG 435
            M+  G   D  TY  +I G     Q  E    + ++     + D +   + +  LC+ G
Sbjct: 287 QMISNGFEPDKVTYNCMIHGYSILGQWKETAGMFREMTRRGLMPDIFTCNSYMSSLCKHG 346

Query: 436 KIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWR 495
           K  EA  F   +   G  P++V Y+V++ G        +   +   M  NG+  D   + 
Sbjct: 347 KSKEAAEFFDSMAAKGHKPDLVTYSVLLHGYAAEGYVVDMLNLFNSMEGNGIVADHSVYN 406

Query: 496 ILDKLHGNRG 505
           IL   +G RG
Sbjct: 407 ILIDAYGKRG 416



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 88/365 (24%), Positives = 164/365 (44%), Gaps = 43/365 (11%)

Query: 145 MIDSLCRSGRNHGASRVV-YVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQ- 202
           ++  LC + R+  A  V+ + M + G+ P  +SY++++  LC+     RA  LL   ++ 
Sbjct: 160 LLKCLCHAKRSDDAVNVLLHRMPELGVEPDTISYSTVLKSLCEDSRSQRALDLLHTMVKK 219

Query: 203 -FGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPT 261
             G  P+  +Y  ++ G   E ++ KA                  CN++           
Sbjct: 220 SGGCSPNVVSYNTVIHGFFREGEVSKA------------------CNLFHE--------- 252

Query: 262 ELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTI 321
                   M+Q    PDV+T ++ I+  CK   +++A  VL  M++  F  PD VT+  +
Sbjct: 253 --------MMQQGVVPDVVTYSSYIDALCKARAMDKAELVLRQMISNGF-EPDKVTYNCM 303

Query: 322 IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG 381
           I G   +G+ +E   + ++ M +RG  P I T N+ +  L +  + +EA E F+ M   G
Sbjct: 304 IHGYSILGQWKETAGM-FREMTRRGLMPDIFTCNSYMSSLCKHGKSKEAAEFFDSMAAKG 362

Query: 382 VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAV 441
              D  TY++++ G      + +    ++ +     + D+ VY  +I    + G + EA+
Sbjct: 363 HKPDLVTYSVLLHGYAAEGYVVDMLNLFNSMEGNGIVADHSVYNILIDAYGKRGMMDEAM 422

Query: 442 HFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK-- 499
               ++ + GV P+   Y  VI    ++    +A     +M   GL PD + +  L +  
Sbjct: 423 LIFTQMQERGVMPDAWTYGTVIAAFSRMGRLADAMDKFNQMIAMGLKPDTIVYNSLIQGF 482

Query: 500 -LHGN 503
            +HGN
Sbjct: 483 CMHGN 487



 Score = 40.4 bits (93), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 28/132 (21%), Positives = 62/132 (46%), Gaps = 5/132 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D +  + +  EA++LF  + + G VPN  +Y  +I    + G ++ A  +F  M   G 
Sbjct: 690 IDAMYKVRKREEANELFDSISATGLVPNASTYGVMITNLLKEGSVEEADNMFSLMEKSGC 749

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+S   + ++R +L   ++ +A   + K+     + + +S+  +  + ++    R+G  
Sbjct: 750 APSSRLLNNIIRVLLEKGEISKAGNYLSKV-----DGKTISLEASTASLMLSLFSRKGKY 804

Query: 121 NEVFRIAEDMPQ 132
            E  +    M Q
Sbjct: 805 REQIKSLPAMYQ 816


>gi|22128591|gb|AAM52341.1| fertility restorer-like protein [Petunia x hybrida]
          Length = 592

 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 113/465 (24%), Positives = 224/465 (48%), Gaps = 41/465 (8%)

Query: 33  TTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWE 92
           + +++  C     D+ + V       G+  N + ++ L+RG+     V+ A      L++
Sbjct: 111 SIVVNSCCLMHRTDLGFSVLAIHFKKGIPFNQVIFNTLLRGLFAENKVKDA----VHLFK 166

Query: 93  RMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRS 152
           ++  E     N   +  +++ LC++G+  + F +   M QG +         +ID+ C+ 
Sbjct: 167 KLVRENICEPNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQGSTKPNTCIYSIVIDAFCKD 226

Query: 153 GRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTY 212
           G   GA+ ++  M+++ + P + +Y++++  LCK         L  E I     P+  T+
Sbjct: 227 GMLDGATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNIYPNVCTF 286

Query: 213 KVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQ 272
             +++GLC E  +E A +++++M+ +K VD                              
Sbjct: 287 NSVIDGLCKEGKVEDAEEIMRYMI-EKGVD------------------------------ 315

Query: 273 TQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQ 332
               PDVIT N +I+G+   G+++ A ++ + M+  K   P+ +++  +I G     +I 
Sbjct: 316 ----PDVITYNMIIDGYGLRGQVDRAREIFDSMI-NKSIEPNIISYNILINGYARQKKID 370

Query: 333 EALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIV 392
           EA+ +  ++  Q+G  P IVT N +L GLF L R + A+  F+ ML  G + D  T+  +
Sbjct: 371 EAMQVCREI-SQKGLKPSIVTCNVLLHGLFELGRTKSAQNFFDEMLSAGHIPDLYTHCTL 429

Query: 393 IDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGV 452
           + G  ++  ++EA   +  +       +  +Y A+I GLC++GK+ +A     +L   G+
Sbjct: 430 LGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVIDGLCKNGKLDKAHATFEKLPLIGL 489

Query: 453 TPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            P+++ Y  +I G C+  +  EA  +LR+M  NG   D  T+ ++
Sbjct: 490 HPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLADNRTYNVI 534



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 112/471 (23%), Positives = 216/471 (45%), Gaps = 43/471 (9%)

Query: 28  NVVSYTTLIHGYCRTGEMDVAYKVFDEM-RHCGVLPNSLTYSVLVRGVLRTRDVERANVL 86
           N V + TL+ G     ++  A  +F ++ R     PN + Y  ++ G+ +    ++A  L
Sbjct: 141 NQVIFNTLLRGLFAENKVKDAVHLFKKLVRENICEPNEVMYGTVMNGLCKKGHTQKAFDL 200

Query: 87  MFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMI 146
           +     R+ E+     N   ++ ++D+ C++G ++    +  +M Q     + F    +I
Sbjct: 201 L-----RLMEQGSTKPNTCIYSIVIDAFCKDGMLDGATSLLNEMKQKSIPPDIFTYSTLI 255

Query: 147 DSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL 206
           D+LC+  +      +   M    + P++ ++NS++ GLCK G    A +++   I+ G  
Sbjct: 256 DALCKLSQWENVRTLFLEMIHLNIYPNVCTFNSVIDGLCKEGKVEDAEEIMRYMIEKGVD 315

Query: 207 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 266
           P   TY ++++G      +++AR++   M++K                            
Sbjct: 316 PDVITYNMIIDGYGLRGQVDRAREIFDSMINK---------------------------- 347

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
                    +P++I+ N +ING+ +  +I+EA++V  + ++ K   P  VT   ++ GL 
Sbjct: 348 -------SIEPNIISYNILINGYARQKKIDEAMQVCRE-ISQKGLKPSIVTCNVLLHGLF 399

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
            +GR + A N  +  M   G+ P + T+  +L G F+   VEEA   F+ +       + 
Sbjct: 400 ELGRTKSAQN-FFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNI 458

Query: 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE 446
             Y  VIDGLC++ +LD+A   ++ +       D   Y AMI G C+ G + EA   L +
Sbjct: 459 QIYTAVIDGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRK 518

Query: 447 LVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           + D+G   +   YNV++ G  + +   E    L E+     + +A T  +L
Sbjct: 519 MEDNGCLADNRTYNVIVRGFLRSNKVSEMKAFLEEIAGKSFSFEAATVELL 569



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 106/451 (23%), Positives = 214/451 (47%), Gaps = 8/451 (1%)

Query: 45  MDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNN 104
           +D A+ +F +M     LP+ +++S L++ ++  +      V +F+   +++    + V+ 
Sbjct: 53  LDDAFSLFRQMVRTKPLPSVVSFSKLLKALVHMKHYSSV-VSLFREIHKLR----IPVHE 107

Query: 105 AAFANLVDSLCREGYVNEVFRI-AEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVY 163
              + +V+S C     +  F + A    +G   N+      +      +           
Sbjct: 108 FILSIVVNSCCLMHRTDLGFSVLAIHFKKGIPFNQVIFNTLLRGLFAENKVKDAVHLFKK 167

Query: 164 VMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGES 223
           ++R+    P+ V Y ++++GLCK G   +A+ LL    Q    P+   Y ++++  C + 
Sbjct: 168 LVRENICEPNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQGSTKPNTCIYSIVIDAFCKDG 227

Query: 224 DLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLN 283
            L+ A  +L  M  K         +  + ALC +     +  + + M+     P+V T N
Sbjct: 228 MLDGATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNIYPNVCTFN 287

Query: 284 TVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMP 343
           +VI+G CK G++E+A +++  M+  K   PD +T+  II G    G++  A  + +  M 
Sbjct: 288 SVIDGLCKEGKVEDAEEIMRYMIE-KGVDPDVITYNMIIDGYGLRGQVDRAREI-FDSMI 345

Query: 344 QRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLD 403
            +   P I++YN ++ G  R ++++EA +V   +   G+     T  +++ GL E  +  
Sbjct: 346 NKSIEPNIISYNILINGYARQKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLFELGRTK 405

Query: 404 EAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463
            A+ F+D+++   +I D Y +  ++ G  ++G + EA+   ++L       NI  Y  VI
Sbjct: 406 SAQNFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVI 465

Query: 464 DGACKLSMKREAYQILREMRKNGLNPDAVTW 494
           DG CK     +A+    ++   GL+PD +T+
Sbjct: 466 DGLCKNGKLDKAHATFEKLPLIGLHPDVITY 496



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 97/416 (23%), Positives = 184/416 (44%), Gaps = 42/416 (10%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M+ LC      +A  L   M+     PN   Y+ +I  +C+ G +D A  + +EM+   +
Sbjct: 185 MNGLCKKGHTQKAFDLLRLMEQGSTKPNTCIYSIVIDAFCKDGMLDGATSLLNEMKQKSI 244

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+  TYS L+  + +    E    L  ++        ++  N   F +++D LC+EG V
Sbjct: 245 PPDIFTYSTLIDALCKLSQWENVRTLFLEMIHL-----NIYPNVCTFNSVIDGLCKEGKV 299

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +                                   A  ++  M ++G+ P +++YN I
Sbjct: 300 ED-----------------------------------AEEIMRYMIEKGVDPDVITYNMI 324

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G    G   RA ++ +  I     P+  +Y +L+ G   +  +++A +V + +  K  
Sbjct: 325 IDGYGLRGQVDRAREIFDSMINKSIEPNIISYNILINGYARQKKIDEAMQVCREISQKGL 384

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                 CN+ L  L  +       N    ML     PD+ T  T++ G+ K G +EEA+ 
Sbjct: 385 KPSIVTCNVLLHGLFELGRTKSAQNFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAMS 444

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
             + +   +    +   +T +I GL   G++ +A +  ++ +P  G  P ++TY A++ G
Sbjct: 445 HFHKLERRR-EDTNIQIYTAVIDGLCKNGKLDKA-HATFEKLPLIGLHPDVITYTAMISG 502

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416
             +   ++EAK++   M   G +AD+ TY +++ G   SN++ E K F ++I   S
Sbjct: 503 YCQEGLLDEAKDMLRKMEDNGCLADNRTYNVIVRGFLRSNKVSEMKAFLEEIAGKS 558



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 150/334 (44%), Gaps = 9/334 (2%)

Query: 172 PSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKV 231
           PS+VS++ ++  L           L  E  +      E    ++V   C     +    V
Sbjct: 70  PSVVSFSKLLKALVHMKHYSSVVSLFREIHKLRIPVHEFILSIVVNSCCLMHRTDLGFSV 129

Query: 232 LQFMLSKKDVDRTRICNIYLRALCL---IKNPTELLNVLVFMLQTQCQPDVITLNTVING 288
           L     K       I N  LR L     +K+   L   LV   +  C+P+ +   TV+NG
Sbjct: 130 LAIHFKKGIPFNQVIFNTLLRGLFAENKVKDAVHLFKKLV--RENICEPNEVMYGTVMNG 187

Query: 289 FCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYS 348
            CK G  ++A  +L  M  G    P+   ++ +I      G +  A +LL + M Q+   
Sbjct: 188 LCKKGHTQKAFDLLRLMEQGS-TKPNTCIYSIVIDAFCKDGMLDGATSLLNE-MKQKSIP 245

Query: 349 PGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRF 408
           P I TY+ ++  L +L + E  + +F  M+ + +  +  T+  VIDGLC+  ++++A+  
Sbjct: 246 PDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNIYPNVCTFNSVIDGLCKEGKVEDAEEI 305

Query: 409 WDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACK 468
              ++      D   Y  +I G    G++  A      +++  + PNI+ YN++I+G  +
Sbjct: 306 MRYMIEKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSMINKSIEPNIISYNILINGYAR 365

Query: 469 LSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
                EA Q+ RE+ + GL P  VT  +L  LHG
Sbjct: 366 QKKIDEAMQVCREISQKGLKPSIVTCNVL--LHG 397



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 75/306 (24%), Positives = 147/306 (48%), Gaps = 10/306 (3%)

Query: 208 SEHTYKVLVEGLCGESD-------LEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNP 260
           S +T  + V+G  G S+       L+ A  + + M+  K +      +  L+AL  +K+ 
Sbjct: 29  STNTRSISVKGNFGVSNEFENVKCLDDAFSLFRQMVRTKPLPSVVSFSKLLKALVHMKHY 88

Query: 261 TELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAP-DAVTFT 319
           + ++++   + + +       L+ V+N  C M R +    VL   +  K   P + V F 
Sbjct: 89  SSVVSLFREIHKLRIPVHEFILSIVVNSCCLMHRTDLGFSVL--AIHFKKGIPFNQVIFN 146

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
           T++ GL    ++++A++L  +++ +    P  V Y  V+ GL +    ++A ++   M  
Sbjct: 147 TLLRGLFAENKVKDAVHLFKKLVRENICEPNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQ 206

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
                ++  Y+IVID  C+   LD A    +++   S   D + Y+ +I  LC+  +   
Sbjct: 207 GSTKPNTCIYSIVIDAFCKDGMLDGATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWEN 266

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
                 E++   + PN+  +N VIDG CK     +A +I+R M + G++PD +T+ ++  
Sbjct: 267 VRTLFLEMIHLNIYPNVCTFNSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIID 326

Query: 500 LHGNRG 505
            +G RG
Sbjct: 327 GYGLRG 332


>gi|357141282|ref|XP_003572167.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Brachypodium distachyon]
          Length = 686

 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 131/501 (26%), Positives = 225/501 (44%), Gaps = 50/501 (9%)

Query: 26  VPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANV 85
            PN  SY  +I G  + G    A K+FDEM    V+PN +TY+ ++ G ++  D+E    
Sbjct: 185 APNAFSYNVVIAGLWKAGTDCDAVKLFDEMPEKAVVPNHITYNTMIDGHIKKGDLESG-- 242

Query: 86  LMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHM 145
             F+LW +M     L  N   +  L+  LCR G + E   + ++M   K V + F    +
Sbjct: 243 --FRLWSQMLRH-GLKPNVITYNVLLSGLCRAGRMGETAAVLDEMASRKMVPDGFTYSIL 299

Query: 146 IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY 205
            D   R+G +     +     K+G+     + + +++GLCK G   +A ++L+  +  G 
Sbjct: 300 FDGHSRTGDSQTMLSLFEESVKKGVKIGAYTCSILLNGLCKDGKISKAEEVLQTLVNSGL 359

Query: 206 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIK------- 258
           L +   Y  L+ G C   DLE A  + Q M S+         N  +  L  ++       
Sbjct: 360 LQTTVIYNTLINGYCQIGDLEGAFSIFQQMKSRLIRPDHITYNALINGLGKVERITEAHD 419

Query: 259 ----------NPT-ELLNVLV------------FMLQTQCQ-----PDVITLNTVINGFC 290
                     NP+ E  N L+            F++ +  Q     P+V++  +++N FC
Sbjct: 420 LVIEMEKNGVNPSVETFNTLIDAYGRAGQLEKCFIILSDMQEKGLKPNVVSYGSIVNAFC 479

Query: 291 KMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG 350
           K G+I EA+ +L+DM   K   P A  +  II   +  G   +A  +L + M   G  P 
Sbjct: 480 KNGKILEAVAILDDMFI-KDVLPGAQVYNAIIDAYIECGSTDQAF-MLAEKMKSSGVPPS 537

Query: 351 IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA----K 406
           IVTYN +++GL +  ++ EA+E+ + +   G+  D  +Y  +I   C  +  D A    K
Sbjct: 538 IVTYNLLIKGLCKQSQISEAEELLDSLRNYGLAPDVISYNTLISACCYRSNTDRALELEK 597

Query: 407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466
             W   + PS       Y  +   L  +G++HE  +   +++D  V P    YN+++D  
Sbjct: 598 EMWKCGIKPSP----RTYRMLFSSLGGAGRVHEMENLYQQMLDKDVVPCSGIYNIMVDAY 653

Query: 467 CKLSMKREAYQILREMRKNGL 487
            K   + +   + +EM   G+
Sbjct: 654 AKCGEESKVEALRKEMSDKGI 674



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 115/441 (26%), Positives = 210/441 (47%), Gaps = 16/441 (3%)

Query: 62  PNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVN 121
           P++ T++  V+  +   D++ A      +  RM  +   + N  ++  ++  L + G   
Sbjct: 150 PDTFTWNKAVQACVVAGDLDEA----VGMLRRMGCDGAPAPNAFSYNVVIAGLWKAGTDC 205

Query: 122 EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
           +  ++ ++MP+   V        MID   + G      R+   M + GL P++++YN ++
Sbjct: 206 DAVKLFDEMPEKAVVPNHITYNTMIDGHIKKGDLESGFRLWSQMLRHGLKPNVITYNVLL 265

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
            GLC+ G       +L+E      +P   TY +L +G     D +    + +  + K   
Sbjct: 266 SGLCRAGRMGETAAVLDEMASRKMVPDGFTYSILFDGHSRTGDSQTMLSLFEESVKKGVK 325

Query: 242 DRTRICNIYLRALCL---IKNPTELLNVLV--FMLQTQCQPDVITLNTVINGFCKMGRIE 296
                C+I L  LC    I    E+L  LV   +LQT      +  NT+ING+C++G +E
Sbjct: 326 IGAYTCSILLNGLCKDGKISKAEEVLQTLVNSGLLQT-----TVIYNTLINGYCQIGDLE 380

Query: 297 EALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
            A  +   M + +   PD +T+  +I GL  V RI EA +L+ + M + G +P + T+N 
Sbjct: 381 GAFSIFQQMKS-RLIRPDHITYNALINGLGKVERITEAHDLVIE-MEKNGVNPSVETFNT 438

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416
           ++    R  ++E+   + + M   G+  +  +Y  +++  C++ ++ EA    DD+    
Sbjct: 439 LIDAYGRAGQLEKCFIILSDMQEKGLKPNVVSYGSIVNAFCKNGKILEAVAILDDMFIKD 498

Query: 417 NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAY 476
            +    VY A+I      G   +A     ++  SGV P+IV YN++I G CK S   EA 
Sbjct: 499 VLPGAQVYNAIIDAYIECGSTDQAFMLAEKMKSSGVPPSIVTYNLLIKGLCKQSQISEAE 558

Query: 477 QILREMRKNGLNPDAVTWRIL 497
           ++L  +R  GL PD +++  L
Sbjct: 559 ELLDSLRNYGLAPDVISYNTL 579



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 120/265 (45%), Gaps = 37/265 (13%)

Query: 277 PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALN 336
           P+  + N VI G  K G   +A+K+ ++M   K   P+ +T+ T+I G +  G ++    
Sbjct: 186 PNAFSYNVVIAGLWKAGTDCDAVKLFDEMPE-KAVVPNHITYNTMIDGHIKKGDLESGFR 244

Query: 337 LLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 396
           L  Q++ + G  P ++TYN +L GL R  R+ E   V + M    +V D  TY+I+ DG 
Sbjct: 245 LWSQML-RHGLKPNVITYNVLLSGLCRAGRMGETAAVLDEMASRKMVPDGFTYSILFDGH 303

Query: 397 CESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNI 456
             +         +++ V        Y  + ++ GLC+ GKI +A   L  LV+SG+    
Sbjct: 304 SRTGDSQTMLSLFEESVKKGVKIGAYTCSILLNGLCKDGKISKAEEVLQTLVNSGLLQTT 363

Query: 457 VCYNVVIDGACKL-----------SMKR------------------------EAYQILRE 481
           V YN +I+G C++            MK                         EA+ ++ E
Sbjct: 364 VIYNTLINGYCQIGDLEGAFSIFQQMKSRLIRPDHITYNALINGLGKVERITEAHDLVIE 423

Query: 482 MRKNGLNPDAVTWRILDKLHGNRGN 506
           M KNG+NP   T+  L   +G  G 
Sbjct: 424 MEKNGVNPSVETFNTLIDAYGRAGQ 448



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 119/253 (47%), Gaps = 5/253 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ L  + R+ EAH L  +M+  G  P+V ++ TLI  Y R G+++  + +  +M+  G+
Sbjct: 405 INGLGKVERITEAHDLVIEMEKNGVNPSVETFNTLIDAYGRAGQLEKCFIILSDMQEKGL 464

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN ++Y  +V    +   +  A  ++  ++ +     D+      +  ++D+    G  
Sbjct: 465 KPNVVSYGSIVNAFCKNGKILEAVAILDDMFIK-----DVLPGAQVYNAIIDAYIECGST 519

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           ++ F +AE M              +I  LC+  +   A  ++  +R  GL P ++SYN++
Sbjct: 520 DQAFMLAEKMKSSGVPPSIVTYNLLIKGLCKQSQISEAEELLDSLRNYGLAPDVISYNTL 579

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +   C      RA +L +E  + G  PS  TY++L   L G   + +   + Q ML K  
Sbjct: 580 ISACCYRSNTDRALELEKEMWKCGIKPSPRTYRMLFSSLGGAGRVHEMENLYQQMLDKDV 639

Query: 241 VDRTRICNIYLRA 253
           V  + I NI + A
Sbjct: 640 VPCSGIYNIMVDA 652



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 75/159 (47%), Gaps = 1/159 (0%)

Query: 349 PGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA-DSTTYAIVIDGLCESNQLDEAKR 407
           P   T+N  ++       ++EA  +   M   G  A ++ +Y +VI GL ++    +A +
Sbjct: 150 PDTFTWNKAVQACVVAGDLDEAVGMLRRMGCDGAPAPNAFSYNVVIAGLWKAGTDCDAVK 209

Query: 408 FWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGAC 467
            +D++   + + ++  Y  MI G  + G +        +++  G+ PN++ YNV++ G C
Sbjct: 210 LFDEMPEKAVVPNHITYNTMIDGHIKKGDLESGFRLWSQMLRHGLKPNVITYNVLLSGLC 269

Query: 468 KLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           +     E   +L EM    + PD  T+ IL   H   G+
Sbjct: 270 RAGRMGETAAVLDEMASRKMVPDGFTYSILFDGHSRTGD 308



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/218 (22%), Positives = 89/218 (40%), Gaps = 43/218 (19%)

Query: 9   RVGEAHKLFF---DMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSL 65
           R G+  K F    DM+ +G  PNVVSY ++++ +C+ G++  A  + D+M    VLP + 
Sbjct: 445 RAGQLEKCFIILSDMQEKGLKPNVVSYGSIVNAFCKNGKILEAVAILDDMFIKDVLPGAQ 504

Query: 66  TYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFR 125
            Y+ ++   +     ++A    F L E+MK    +  +   +  L+  LC++  ++E   
Sbjct: 505 VYNAIIDAYIECGSTDQA----FMLAEKMKSS-GVPPSIVTYNLLIKGLCKQSQISEAEE 559

Query: 126 IAEDM------PQGKSVN--------------------EEFACG---------HMIDSLC 150
           + + +      P   S N                    E + CG          +  SL 
Sbjct: 560 LLDSLRNYGLAPDVISYNTLISACCYRSNTDRALELEKEMWKCGIKPSPRTYRMLFSSLG 619

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
            +GR H    +   M  + + P    YN +V    K G
Sbjct: 620 GAGRVHEMENLYQQMLDKDVVPCSGIYNIMVDAYAKCG 657


>gi|357460281|ref|XP_003600422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355489470|gb|AES70673.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 512

 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 118/418 (28%), Positives = 214/418 (51%), Gaps = 11/418 (2%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M+  G   N+V+ + LI+ + + G   +++ VF  +   G  P+++T + L++G+    D
Sbjct: 95  MEFNGIASNLVTLSILINCFSQLGHNSLSFSVFSNILKKGYEPDAITLTTLIKGLCLKGD 154

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
           + +A     K+           +N  ++  L++ LC+ G       +   +  GK V  +
Sbjct: 155 IHKALHFHDKVLAL-----GFQLNQVSYRTLINGLCKVGQTKAALEMLRRI-DGKLVRLD 208

Query: 140 FAC-GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLE 198
                 +ID +C+    + A      M  + + P++V+YN+++ GLC  G    A  LL 
Sbjct: 209 VVMYNTIIDGVCKDKLVNDAFDFYSEMVAKRICPTVVTYNTLICGLCIMGQLKDAIGLLH 268

Query: 199 EGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC-NIYLRALCLI 257
           + I     P+ +T+ +LV+  C E  +++A+ V   M+ KKDV    +  N  +   CL+
Sbjct: 269 KMILENINPTVYTFSILVDAFCKEGKVKEAKNVFVVMM-KKDVKPNIVTYNSLMNGYCLV 327

Query: 258 KNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVT 317
               +  ++   M Q    PDV + + +I+GFCK+  ++EA+K+  +M   +   PD VT
Sbjct: 328 NEVNKAESIFNTMAQIGVAPDVHSYSIMISGFCKIKMVDEAMKLFEEMHCKQI-FPDVVT 386

Query: 318 FTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCM 377
           + ++I GL   GRI  AL L+ + M  RG  P I+TYN++L  L +   V++A E+   +
Sbjct: 387 YNSLIDGLCKSGRISYALKLIGE-MHDRGQPPNIITYNSLLDALCKNHHVDKAIELLTKL 445

Query: 378 LGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG 435
               +     TY I+I+GLC+S +L +A++ ++D++      D Y Y  MIKG C+ G
Sbjct: 446 KDHNIQPSVCTYNILINGLCKSGRLKDAQKVFEDVLVNGYNIDVYTYNTMIKGFCKKG 503



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 103/391 (26%), Positives = 199/391 (50%), Gaps = 2/391 (0%)

Query: 107 FANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMR 166
           F  ++ SL +  + + V  +   M      +       +I+   + G N  +  V   + 
Sbjct: 72  FGKILGSLVKANHYSIVVSLHRQMEFNGIASNLVTLSILINCFSQLGHNSLSFSVFSNIL 131

Query: 167 KRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLE 226
           K+G  P  ++  +++ GLC  G   +A    ++ +  G+  ++ +Y+ L+ GLC     +
Sbjct: 132 KKGYEPDAITLTTLIKGLCLKGDIHKALHFHDKVLALGFQLNQVSYRTLINGLCKVGQTK 191

Query: 227 KARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVI 286
            A ++L+ +  K       + N  +  +C  K   +  +    M+  +  P V+T NT+I
Sbjct: 192 AALEMLRRIDGKLVRLDVVMYNTIIDGVCKDKLVNDAFDFYSEMVAKRICPTVVTYNTLI 251

Query: 287 NGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
            G C MG++++A+ +L+ M+      P   TF+ ++      G+++EA N+ + VM ++ 
Sbjct: 252 CGLCIMGQLKDAIGLLHKMILENI-NPTVYTFSILVDAFCKEGKVKEAKNV-FVVMMKKD 309

Query: 347 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
             P IVTYN+++ G   +  V +A+ +FN M  IGV  D  +Y+I+I G C+   +DEA 
Sbjct: 310 VKPNIVTYNSLMNGYCLVNEVNKAESIFNTMAQIGVAPDVHSYSIMISGFCKIKMVDEAM 369

Query: 407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466
           + ++++       D   Y ++I GLC+SG+I  A+  + E+ D G  PNI+ YN ++D  
Sbjct: 370 KLFEEMHCKQIFPDVVTYNSLIDGLCKSGRISYALKLIGEMHDRGQPPNIITYNSLLDAL 429

Query: 467 CKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           CK     +A ++L +++ + + P   T+ IL
Sbjct: 430 CKNHHVDKAIELLTKLKDHNIQPSVCTYNIL 460



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 116/222 (52%), Gaps = 5/222 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C   +V EA  +F  M  +   PN+V+Y +L++GYC   E++ A  +F+ M   GV
Sbjct: 286 VDAFCKEGKVKEAKNVFVVMMKKDVKPNIVTYNSLMNGYCLVNEVNKAESIFNTMAQIGV 345

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+  +YS+++ G  + + V+ A     KL+E M  ++    +   + +L+D LC+ G +
Sbjct: 346 APDVHSYSIMISGFCKIKMVDEA----MKLFEEMHCKQIFP-DVVTYNSLIDGLCKSGRI 400

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +   ++  +M              ++D+LC++     A  ++  ++   + PS+ +YN +
Sbjct: 401 SYALKLIGEMHDRGQPPNIITYNSLLDALCKNHHVDKAIELLTKLKDHNIQPSVCTYNIL 460

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGE 222
           ++GLCK G    A ++ E+ +  GY    +TY  +++G C +
Sbjct: 461 INGLCKSGRLKDAQKVFEDVLVNGYNIDVYTYNTMIKGFCKK 502



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/299 (27%), Positives = 138/299 (46%), Gaps = 13/299 (4%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D +C    V +A   + +M ++   P VV+Y TLI G C  G++  A  +  +M    +
Sbjct: 216 IDGVCKDKLVNDAFDFYSEMVAKRICPTVVTYNTLICGLCIMGQLKDAIGLLHKMILENI 275

Query: 61  LPNSLTYSVLVRGVLRTRDVERA-NVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGY 119
            P   T+S+LV    +   V+ A NV +  +      ++D+  N   + +L++  C    
Sbjct: 276 NPTVYTFSILVDAFCKEGKVKEAKNVFVVMM------KKDVKPNIVTYNSLMNGYCLVNE 329

Query: 120 VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           VN+   I   M Q     +  +   MI   C+      A ++   M  + + P +V+YNS
Sbjct: 330 VNKAESIFNTMAQIGVAPDVHSYSIMISGFCKIKMVDEAMKLFEEMHCKQIFPDVVTYNS 389

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++ GLCK G    A +L+ E    G  P+  TY  L++ LC    ++KA   ++ +   K
Sbjct: 390 LIDGLCKSGRISYALKLIGEMHDRGQPPNIITYNSLLDALCKNHHVDKA---IELLTKLK 446

Query: 240 DVD-RTRIC--NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 295
           D + +  +C  NI +  LC      +   V   +L      DV T NT+I GFCK G +
Sbjct: 447 DHNIQPSVCTYNILINGLCKSGRLKDAQKVFEDVLVNGYNIDVYTYNTMIKGFCKKGFV 505


>gi|218200855|gb|EEC83282.1| hypothetical protein OsI_28637 [Oryza sativa Indica Group]
          Length = 662

 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 135/509 (26%), Positives = 231/509 (45%), Gaps = 33/509 (6%)

Query: 21  KSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDV 80
           +SR    N  SYT +I   C+ G++D  +++  E+   G+ P  +TY+VL+  + ++  V
Sbjct: 3   ESRNVALNEYSYTAMIKALCKAGKVDAGFEMLAELWRAGLQPTVVTYNVLMDALCKSGRV 62

Query: 81  ERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEF 140
           E A    F+L  RM E+  ++ +   F  L++ L R     EV  + ++M Q      E 
Sbjct: 63  EEA----FRLKGRM-EQGGMTPSVVTFGILINGLARGERFGEVGIVLQEMEQLGVSPNEV 117

Query: 141 ACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEG 200
               +I   CR G    A R+   M  + + P+ V+YN I   LCK G   RA ++LE+ 
Sbjct: 118 IYNELIGWHCRKGHCSQALRLFDEMVLKKMKPTAVTYNLIAKALCKEGEMERAERILEDM 177

Query: 201 IQFGYLPSEHTYKVLVEGLCGESD-LEKARKVLQFMLSK-----------------KDVD 242
           +  G       +  +V  L   +  LE    +   M+++                 K   
Sbjct: 178 LSIGMTVHCGLFNTVVAWLLQRTRRLESVVSITNEMVTRGMRPNDPLMTACMRELCKGGK 237

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
                 I+ + L   K   E   V+  ML    + D IT N +I G CK  ++EEA+K+ 
Sbjct: 238 HQEAVGIWFKTLNKGKYMKEATKVIQTMLNKGIELDSITYNIMIRGCCKDSKMEEAIKLH 297

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
            DM    F  PD  TF T++    N+G+++E  +LL Q M   G  P IV+Y  ++ G  
Sbjct: 298 GDMTRRGF-KPDLFTFNTLLHAYCNLGKMEETFHLLDQ-MKTEGLQPDIVSYGTIIDGHC 355

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE----SNQLDEAKRFWDDIVWPSNI 418
           + + + +AKE    ++  G+  +   Y  +I G       S  +D  +    + + P+N+
Sbjct: 356 KAKDIRKAKEYLTELMDRGLKPNVFIYNALIGGYGRNGDISGAIDAVETMKSNGIQPTNV 415

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI 478
                Y +++  +C +G + EA     +  ++ V   ++ Y ++I G CKL    EA   
Sbjct: 416 ----TYGSLMYWMCHAGLVEEAKTIFSQARENNVDLGVIGYTIMIQGYCKLGKMVEAVAY 471

Query: 479 LREMRKNGLNPDAVTWRILDKLHGNRGND 507
             EMR  G++P+ +T+  L   +   GN 
Sbjct: 472 FEEMRSRGISPNKLTYTTLMYAYSKSGNS 500



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 141/508 (27%), Positives = 231/508 (45%), Gaps = 46/508 (9%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           MD LC   RV EA +L   M+  G  P+VV++  LI+G  R         V  EM   GV
Sbjct: 53  MDALCKSGRVEEAFRLKGRMEQGGMTPSVVTFGILINGLARGERFGEVGIVLQEMEQLGV 112

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN + Y+ L+    R     +A     +L++ M  ++ +      +  +  +LC+EG +
Sbjct: 113 SPNEVIYNELIGWHCRKGHCSQA----LRLFDEMVLKK-MKPTAVTYNLIAKALCKEGEM 167

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDS-----LCRSGRNHGASRVVYVMRKRGLTPSLV 175
               RI EDM    S+     CG + ++     L R+ R      +   M  RG+ P+  
Sbjct: 168 ERAERILEDML---SIGMTVHCG-LFNTVVAWLLQRTRRLESVVSITNEMVTRGMRPNDP 223

Query: 176 SYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM 235
              + +  LCK G    A      GI F         K L +G      +++A KV+Q M
Sbjct: 224 LMTACMRELCKGGKHQEAV-----GIWF---------KTLNKG----KYMKEATKVIQTM 265

Query: 236 LSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 295
           L+K     +   NI +R  C      E + +   M +   +PD+ T NT+++ +C +G++
Sbjct: 266 LNKGIELDSITYNIMIRGCCKDSKMEEAIKLHGDMTRRGFKPDLFTFNTLLHAYCNLGKM 325

Query: 296 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN 355
           EE   +L+ M       PD V++ TII G      I++A   L ++M  RG  P +  YN
Sbjct: 326 EETFHLLDQMKTEGL-QPDIVSYGTIIDGHCKAKDIRKAKEYLTELM-DRGLKPNVFIYN 383

Query: 356 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP 415
           A++ G  R   +  A +    M   G+   + TY  ++  +C +  ++EAK  +      
Sbjct: 384 ALIGGYGRNGDISGAIDAVETMKSNGIQPTNVTYGSLMYWMCHAGLVEEAKTIF------ 437

Query: 416 SNIHDNYV------YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKL 469
           S   +N V      Y  MI+G C+ GK+ EAV +  E+   G++PN + Y  ++    K 
Sbjct: 438 SQARENNVDLGVIGYTIMIQGYCKLGKMVEAVAYFEEMRSRGISPNKLTYTTLMYAYSKS 497

Query: 470 SMKREAYQILREMRKNGLNPDAVTWRIL 497
               EA ++  EM  +G+ PD +T+  L
Sbjct: 498 GNSEEASKLFDEMVGSGVIPDNITYGTL 525



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 105/388 (27%), Positives = 179/388 (46%), Gaps = 18/388 (4%)

Query: 139 EFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLE 198
           E++   MI +LC++G+      ++  + + GL P++V+YN ++  LCK G    A++L  
Sbjct: 11  EYSYTAMIKALCKAGKVDAGFEMLAELWRAGLQPTVVTYNVLMDALCKSGRVEEAFRLKG 70

Query: 199 EGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIK 258
              Q G  PS  T+ +L+ GL       +   VLQ M          I N  +   C   
Sbjct: 71  RMEQGGMTPSVVTFGILINGLARGERFGEVGIVLQEMEQLGVSPNEVIYNELIGWHCRKG 130

Query: 259 NPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTF 318
           + ++ L +   M+  + +P  +T N +    CK G +E A ++L DM++        + F
Sbjct: 131 HCSQALRLFDEMVLKKMKPTAVTYNLIAKALCKEGEMERAERILEDMLSIGMTVHCGL-F 189

Query: 319 TTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL-------------FRL- 364
            T++  LL   R  E++  +   M  RG  P      A +R L             F+  
Sbjct: 190 NTVVAWLLQRTRRLESVVSITNEMVTRGMRPNDPLMTACMRELCKGGKHQEAVGIWFKTL 249

Query: 365 ---RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
              + ++EA +V   ML  G+  DS TY I+I G C+ ++++EA +   D+       D 
Sbjct: 250 NKGKYMKEATKVIQTMLNKGIELDSITYNIMIRGCCKDSKMEEAIKLHGDMTRRGFKPDL 309

Query: 422 YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
           + +  ++   C  GK+ E  H L ++   G+ P+IV Y  +IDG CK    R+A + L E
Sbjct: 310 FTFNTLLHAYCNLGKMEETFHLLDQMKTEGLQPDIVSYGTIIDGHCKAKDIRKAKEYLTE 369

Query: 482 MRKNGLNPDAVTWRILDKLHGNRGNDFG 509
           +   GL P+   +  L   +G  G+  G
Sbjct: 370 LMDRGLKPNVFIYNALIGGYGRNGDISG 397



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 101/443 (22%), Positives = 194/443 (43%), Gaps = 35/443 (7%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           R GE   +  +M+  G  PN V Y  LI  +CR G    A ++FDEM    + P ++TY+
Sbjct: 96  RFGEVGIVLQEMEQLGVSPNEVIYNELIGWHCRKGHCSQALRLFDEMVLKKMKPTAVTYN 155

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDS-----LCREGYVNEV 123
           ++ + + +  ++ERA  ++         E+ LS+       L ++     L R   +  V
Sbjct: 156 LIAKALCKEGEMERAERIL---------EDMLSIGMTVHCGLFNTVVAWLLQRTRRLESV 206

Query: 124 FRIAEDM-PQGKSVNEEFACGHMIDSLCRSGR------------NHG-----ASRVVYVM 165
             I  +M  +G   N+      M + LC+ G+            N G     A++V+  M
Sbjct: 207 VSITNEMVTRGMRPNDPLMTACMRE-LCKGGKHQEAVGIWFKTLNKGKYMKEATKVIQTM 265

Query: 166 RKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDL 225
             +G+    ++YN ++ G CK      A +L  +  + G+ P   T+  L+   C    +
Sbjct: 266 LNKGIELDSITYNIMIRGCCKDSKMEEAIKLHGDMTRRGFKPDLFTFNTLLHAYCNLGKM 325

Query: 226 EKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTV 285
           E+   +L  M ++            +   C  K+  +    L  ++    +P+V   N +
Sbjct: 326 EETFHLLDQMKTEGLQPDIVSYGTIIDGHCKAKDIRKAKEYLTELMDRGLKPNVFIYNAL 385

Query: 286 INGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQR 345
           I G+ + G I  A+  +  M +     P  VT+ ++++ + + G ++EA  +  Q   + 
Sbjct: 386 IGGYGRNGDISGAIDAVETMKSNGI-QPTNVTYGSLMYWMCHAGLVEEAKTIFSQA-REN 443

Query: 346 GYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA 405
               G++ Y  +++G  +L ++ EA   F  M   G+  +  TY  ++    +S   +EA
Sbjct: 444 NVDLGVIGYTIMIQGYCKLGKMVEAVAYFEEMRSRGISPNKLTYTTLMYAYSKSGNSEEA 503

Query: 406 KRFWDDIVWPSNIHDNYVYAAMI 428
            + +D++V    I DN  Y  +I
Sbjct: 504 SKLFDEMVGSGVIPDNITYGTLI 526



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 46/67 (68%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C L ++ EA   F +M+SRG  PN ++YTTL++ Y ++G  + A K+FDEM   GV+P++
Sbjct: 460 CKLGKMVEAVAYFEEMRSRGISPNKLTYTTLMYAYSKSGNSEEASKLFDEMVGSGVIPDN 519

Query: 65  LTYSVLV 71
           +TY  L+
Sbjct: 520 ITYGTLI 526



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 45/195 (23%), Positives = 87/195 (44%), Gaps = 7/195 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C    + +A +   ++  RG  PNV  Y  LI GY R G++  A    + M+  G+
Sbjct: 351 IDGHCKAKDIRKAKEYLTELMDRGLKPNVFIYNALIGGYGRNGDISGAIDAVETMKSNGI 410

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P ++TY  L+  +     VE A  +  +       E ++ +    +  ++   C+ G +
Sbjct: 411 QPTNVTYGSLMYWMCHAGLVEEAKTIFSQ-----ARENNVDLGVIGYTIMIQGYCKLGKM 465

Query: 121 NEVFRIAEDM-PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
            E     E+M  +G S N+      ++ +  +SG +  AS++   M   G+ P  ++Y +
Sbjct: 466 VEAVAYFEEMRSRGISPNK-LTYTTLMYAYSKSGNSEEASKLFDEMVGSGVIPDNITYGT 524

Query: 180 IVHGLCKHGGCMRAY 194
           ++    + GG    Y
Sbjct: 525 LIARCSEKGGKTTQY 539


>gi|223635748|sp|Q9LVQ5.2|PP432_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g55840
          Length = 1096

 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 120/493 (24%), Positives = 231/493 (46%), Gaps = 6/493 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC  +    A   +  MK  G     ++YT +I G C+ G +D A  + +EM   G+
Sbjct: 375 LDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGI 434

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TYS L+ G  +    + A  ++ +++        LS N   ++ L+ + CR G +
Sbjct: 435 DPDIVTYSALINGFCKVGRFKTAKEIVCRIYR-----VGLSPNGIIYSTLIYNCCRMGCL 489

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E  RI E M       + F    ++ SLC++G+   A   +  M   G+ P+ VS++ +
Sbjct: 490 KEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCL 549

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++G    G  ++A+ + +E  + G+ P+  TY  L++GLC    L +A K L+ + +   
Sbjct: 550 INGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPA 609

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
              T + N  L A+C   N  + +++   M+Q    PD  T  ++I+G C+ G+   A+ 
Sbjct: 610 AVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAIL 669

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
              +  A     P+ V +T  + G+   G+ +  +    Q M   G++P IVT NA++ G
Sbjct: 670 FAKEAEARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQ-MDNLGHTPDIVTTNAMIDG 728

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
             R+ ++E+  ++   M       + TTY I++ G  +   +  +   +  I+    + D
Sbjct: 729 YSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPD 788

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
                +++ G+C S  +   +  L   +  GV  +   +N++I   C       A+ +++
Sbjct: 789 KLTCHSLVLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWAFDLVK 848

Query: 481 EMRKNGLNPDAVT 493
            M   G++ D  T
Sbjct: 849 VMTSLGISLDKDT 861



 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 131/528 (24%), Positives = 232/528 (43%), Gaps = 41/528 (7%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC      ++  L   M+  G+ P +V+Y T++H YC+ G    A ++ D M+  GV
Sbjct: 200 INVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGV 259

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEED--------------------- 99
             +  TY++L+  + R+  + +  +L+  + +RM    +                     
Sbjct: 260 DADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQ 319

Query: 100 ---------LSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC 150
                    LS N+  F  L+D    EG   E  ++   M        E + G ++D LC
Sbjct: 320 LLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLC 379

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
           ++     A      M++ G+    ++Y  ++ GLCK+G    A  LL E  + G  P   
Sbjct: 380 KNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIV 439

Query: 211 TYKVLVEGLCGESDLEKARKVL----QFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 266
           TY  L+ G C     + A++++    +  LS   +  + +     R  CL K    +   
Sbjct: 440 TYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCL-KEAIRIYEA 498

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
           ++    T+   D  T N ++   CK G++ EA + +  M +     P+ V+F  +I G  
Sbjct: 499 MILEGHTR---DHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGI-LPNTVSFDCLINGYG 554

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
           N G   +A + ++  M + G+ P   TY ++L+GL +   + EA++    +  +    D+
Sbjct: 555 NSGEGLKAFS-VFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDT 613

Query: 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE 446
             Y  ++  +C+S  L +A   + ++V  S + D+Y Y ++I GLCR GK   A+ F  E
Sbjct: 614 VMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKE 673

Query: 447 LVDSG-VTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVT 493
               G V PN V Y   +DG  K    +       +M   G  PD VT
Sbjct: 674 AEARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVT 721



 Score =  167 bits (424), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 123/524 (23%), Positives = 243/524 (46%), Gaps = 44/524 (8%)

Query: 10  VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSV 69
           + ++ ++F  M   G  P+V +   ++    ++GE    +    EM    + P+  T+++
Sbjct: 139 IQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKICPDVATFNI 198

Query: 70  LVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAED 129
           L+  +      E+++ LM K+     E+   +     +  ++   C++G       + + 
Sbjct: 199 LINVLCAEGSFEKSSYLMQKM-----EKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDH 253

Query: 130 MPQGKSVNEEFACGHM-IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
           M + K V+ +    +M I  LCRS R      ++  MRKR + P+ V+YN++++G    G
Sbjct: 254 M-KSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEG 312

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
             + A QLL E + FG  P+  T+  L++G   E + ++A K+   M +K          
Sbjct: 313 KVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYG 372

Query: 249 IYLRALC---------------------------------LIKNP--TELLNVLVFMLQT 273
           + L  LC                                 L KN    E + +L  M + 
Sbjct: 373 VLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKD 432

Query: 274 QCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQE 333
              PD++T + +INGFCK+GR + A +++  +      +P+ + ++T+I+    +G ++E
Sbjct: 433 GIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGL-SPNGIIYSTLIYNCCRMGCLKE 491

Query: 334 ALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVI 393
           A+  +Y+ M   G++    T+N ++  L +  +V EA+E   CM   G++ ++ ++  +I
Sbjct: 492 AIR-IYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLI 550

Query: 394 DGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVT 453
           +G   S +  +A   +D++    +    + Y +++KGLC+ G + EA  FL  L      
Sbjct: 551 NGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAA 610

Query: 454 PNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            + V YN ++   CK     +A  +  EM +  + PD+ T+  L
Sbjct: 611 VDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSL 654



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 124/496 (25%), Positives = 215/496 (43%), Gaps = 8/496 (1%)

Query: 3    QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
             LC   +V EA +    M S G +PN VS+  LI+GY  +GE   A+ VFDEM   G  P
Sbjct: 517  SLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHP 576

Query: 63   NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
               TY  L++G+ +   +  A   +  L          +V+   +  L+ ++C+ G + +
Sbjct: 577  TFFTYGSLLKGLCKGGHLREAEKFLKSL-----HAVPAAVDTVMYNTLLTAMCKSGNLAK 631

Query: 123  VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRG-LTPSLVSYNSIV 181
               +  +M Q   + + +    +I  LCR G+   A         RG + P+ V Y   V
Sbjct: 632  AVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKEAEARGNVLPNKVMYTCFV 691

Query: 182  HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
             G+ K G         E+    G+ P   T   +++G      +EK   +L  M ++   
Sbjct: 692  DGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGG 751

Query: 242  DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
                  NI L      K+ +    +   ++     PD +T ++++ G C+   +E  LK+
Sbjct: 752  PNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSLVLGICESNMLEIGLKI 811

Query: 302  LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
            L   +  +    D  TF  +I      G I  A +L+ +VM   G S    T +A++  L
Sbjct: 812  LKAFIC-RGVEVDRYTFNMLISKCCANGEINWAFDLV-KVMTSLGISLDKDTCDAMVSVL 869

Query: 362  FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
             R  R +E++ V + M   G+  +S  Y  +I+GLC    +  A    ++++       N
Sbjct: 870  NRNHRFQESRMVLHEMSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPN 929

Query: 422  YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
               +AM++ L + GK  EA   L  ++   + P I  +  ++   CK     EA ++   
Sbjct: 930  VAESAMVRALAKCGKADEATLLLRFMLKMKLVPTIASFTTLMHLCCKNGNVIEALELRVV 989

Query: 482  MRKNGLNPDAVTWRIL 497
            M   GL  D V++ +L
Sbjct: 990  MSNCGLKLDLVSYNVL 1005



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 115/444 (25%), Positives = 206/444 (46%), Gaps = 49/444 (11%)

Query: 103 NNAAFANLVDSLCREGYVN---EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGAS 159
           N + +  L+    REG +    E+FR+        SV   + C  ++ S+ +SG +    
Sbjct: 122 NPSVYDILIRVYLREGMIQDSLEIFRLMGLYGFNPSV---YTCNAILGSVVKSGEDVSVW 178

Query: 160 RVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGL 219
             +  M KR + P + ++N +++ LC  G   ++  L+++  + GY P+  TY  ++   
Sbjct: 179 SFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWY 238

Query: 220 CGESDLEKARKVLQFMLSKK-DVDRTRIC--NIYLRALCLIKNPTELLNVLVFMLQTQCQ 276
           C +   + A ++L  M SK  D D   +C  N+ +  LC      +   +L  M +    
Sbjct: 239 CKKGRFKAAIELLDHMKSKGVDAD---VCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIH 295

Query: 277 PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALN 336
           P+ +T NT+INGF   G++  A ++LN+M++    +P+ VTF  +I G ++ G  +EAL 
Sbjct: 296 PNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGL-SPNHVTFNALIDGHISEGNFKEALK 354

Query: 337 LLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 396
           + Y +M  +G +P  V+Y  +L GL +    + A+  +  M   GV     TY  +IDGL
Sbjct: 355 MFY-MMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGL 413

Query: 397 CESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGK-------------------- 436
           C++  LDEA    +++       D   Y+A+I G C+ G+                    
Sbjct: 414 CKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNG 473

Query: 437 ---------------IHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
                          + EA+     ++  G T +   +NV++   CK     EA + +R 
Sbjct: 474 IIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRC 533

Query: 482 MRKNGLNPDAVTWRILDKLHGNRG 505
           M  +G+ P+ V++  L   +GN G
Sbjct: 534 MTSDGILPNTVSFDCLINGYGNSG 557



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 128/577 (22%), Positives = 229/577 (39%), Gaps = 78/577 (13%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    + EA  L  +M   G  P++V+Y+ LI+G+C+ G    A ++   +   G+
Sbjct: 410 IDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGL 469

Query: 61  LPNSLTYSVLVRGVLR-------------------TRDVERANVLMFKL----------- 90
            PN + YS L+    R                   TRD    NVL+  L           
Sbjct: 470 SPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEE 529

Query: 91  WERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC 150
           + R    + +  N  +F  L++     G   + F + ++M +       F  G ++  LC
Sbjct: 530 FMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLC 589

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
           + G    A + +  +         V YN+++  +CK G   +A  L  E +Q   LP  +
Sbjct: 590 KGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSY 649

Query: 211 TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIK---NPTELLNVL 267
           TY  L+ GLC      K + V+  + +K+   R  +    +   C +       +    +
Sbjct: 650 TYTSLISGLC-----RKGKTVIAILFAKEAEARGNVLPNKVMYTCFVDGMFKAGQWKAGI 704

Query: 268 VFMLQTQC---QPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 324
            F  Q       PD++T N +I+G+ +MG+IE+   +L +M   +   P+  T+  ++ G
Sbjct: 705 YFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEM-GNQNGGPNLTTYNILLHG 763

Query: 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL---------------FRLRRVEE 369
                 +  +  LLY+ +   G  P  +T ++++ G+               F  R VE 
Sbjct: 764 YSKRKDVSTSF-LLYRSIILNGILPDKLTCHSLVLGICESNMLEIGLKILKAFICRGVEV 822

Query: 370 AKEVFN--------------------CMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFW 409
            +  FN                     M  +G+  D  T   ++  L  +++  E++   
Sbjct: 823 DRYTFNMLISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQESRMVL 882

Query: 410 DDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKL 469
            ++       ++  Y  +I GLCR G I  A     E++   + P  V  + ++    K 
Sbjct: 883 HEMSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKC 942

Query: 470 SMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
               EA  +LR M K  L P   ++  L  L    GN
Sbjct: 943 GKADEATLLLRFMLKMKLVPTIASFTTLMHLCCKNGN 979



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 126/519 (24%), Positives = 213/519 (41%), Gaps = 47/519 (9%)

Query: 4    LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            LC    + EA K    + +     + V Y TL+   C++G +  A  +F EM    +LP+
Sbjct: 588  LCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPD 647

Query: 64   SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            S TY+ L+ G+ R    +   V+     +  +   ++  N   +   VD + + G     
Sbjct: 648  SYTYTSLISGLCR----KGKTVIAILFAKEAEARGNVLPNKVMYTCFVDGMFKAGQWKAG 703

Query: 124  FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
                E M       +      MID   R G+    + ++  M  +   P+L +YN ++HG
Sbjct: 704  IYFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHG 763

Query: 184  LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQ-FMLSKKDVD 242
              K      ++ L    I  G LP + T   LV G+C  + LE   K+L+ F+    +VD
Sbjct: 764  YSKRKDVSTSFLLYRSIILNGILPDKLTCHSLVLGICESNMLEIGLKILKAFICRGVEVD 823

Query: 243  RTRICNIYLRALC----------LIKNPTEL---------------LN----------VL 267
            R    N+ +   C          L+K  T L               LN          VL
Sbjct: 824  RYTF-NMLISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQESRMVL 882

Query: 268  VFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLN 327
              M +    P+      +ING C++G I+ A  V  +M+A K C P+ V  + ++  L  
Sbjct: 883  HEMSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPN-VAESAMVRALAK 941

Query: 328  VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADST 387
             G+  EA  LL + M +    P I ++  ++    +   V EA E+   M   G+  D  
Sbjct: 942  CGKADEA-TLLLRFMLKMKLVPTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLV 1000

Query: 388  TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKG-LCRSGKIHEAVHFLYE 446
            +Y ++I GLC    +  A   ++++     + +   Y A+I+G L R      A   L +
Sbjct: 1001 SYNVLITGLCAKGDMALAFELYEEMKGDGFLANATTYKALIRGLLARETAFSGADIILKD 1060

Query: 447  LVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN 485
            L+  G    I   ++  D    L M  E  + L+  +K+
Sbjct: 1061 LLARGF---ITSMSLSQDSHRNLKMAMEKLKALQSNKKD 1096



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/231 (30%), Positives = 99/231 (42%), Gaps = 37/231 (16%)

Query: 276 QPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEAL 335
            P V T N ++    K G        L +M+  K C PD  TF  +I  L   G  +++ 
Sbjct: 155 NPSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKIC-PDVATFNILINVLCAEGSFEKS- 212

Query: 336 NLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG 395
           + L Q M + GY+P IVTYN VL    +  R + A E+ + M   GV AD  TY ++I  
Sbjct: 213 SYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLI-- 270

Query: 396 LCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN 455
                                  HD          LCRS +I +    L ++    + PN
Sbjct: 271 -----------------------HD----------LCRSNRIAKGYLLLRDMRKRMIHPN 297

Query: 456 IVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
            V YN +I+G         A Q+L EM   GL+P+ VT+  L   H + GN
Sbjct: 298 EVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGN 348



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 52/94 (55%), Gaps = 1/94 (1%)

Query: 1    MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
            M   C    V EA +L   M + G   ++VSY  LI G C  G+M +A+++++EM+  G 
Sbjct: 971  MHLCCKNGNVIEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMALAFELYEEMKGDGF 1030

Query: 61   LPNSLTYSVLVRGVL-RTRDVERANVLMFKLWER 93
            L N+ TY  L+RG+L R      A++++  L  R
Sbjct: 1031 LANATTYKALIRGLLARETAFSGADIILKDLLAR 1064


>gi|242069905|ref|XP_002450229.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
 gi|241936072|gb|EES09217.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
          Length = 797

 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 124/491 (25%), Positives = 229/491 (46%), Gaps = 19/491 (3%)

Query: 4   LCGLSRVGEAHKLFFD-MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEM-----RH 57
           LC   R+ EA  +    M   G  P+VVSY TL+ G+C     + A ++   M     R 
Sbjct: 139 LCDAKRLCEAMDILVKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRS 198

Query: 58  CGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCRE 117
           C   PN ++Y++++ G      V++A  L  ++ +R      +  N   +  ++D LC+ 
Sbjct: 199 CP--PNVVSYAIVINGFFTEGQVDKAYNLFLEMMDR-----GIQPNVVTYTTVIDGLCKA 251

Query: 118 GYVNEVFRIAEDMPQG--KSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLV 175
             V+    + + M     K  N+ + C  +I      G+     R++  M   GL P   
Sbjct: 252 QVVDRAEGVFQQMIDKGVKPDNDTYNC--LIHGYLSIGKWKEVVRMLEEMSAHGLKPDCY 309

Query: 176 SYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM 235
           +Y S+++ LC +G C  A  L +  I+ G  P+   Y +L+ G   +  L +   +L  M
Sbjct: 310 TYGSLLNYLCNNGRCREARFLFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLM 369

Query: 236 LSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 295
           +         I NI   A        E +++   M Q    PDV+    +I+  CK+GR+
Sbjct: 370 VENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNYGALIDALCKLGRV 429

Query: 296 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN 355
           ++A+   N M+  +  AP+   F ++++GL  V + ++A    ++++ Q G  P +V +N
Sbjct: 430 DDAVLKFNQMM-NEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQ-GIRPDVVFFN 487

Query: 356 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP 415
            +L  L    +V +A+ + + M  +G      +Y  +I G C   ++DEA +  D ++  
Sbjct: 488 TILCNLCTKGQVMKAQRLIDLMERVGTRPGVISYTTLIGGHCLVGRIDEAAKSLDVMLSV 547

Query: 416 SNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREA 475
               D + Y  ++ G CR+G+I +A     E++ +G+TP +V Y+ ++ G        EA
Sbjct: 548 GLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEA 607

Query: 476 YQILREMRKNG 486
            ++   M  +G
Sbjct: 608 KELYLNMITSG 618



 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 130/504 (25%), Positives = 236/504 (46%), Gaps = 18/504 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    V  A  +F  M  +G  P+  +Y  LIHGY   G+     ++ +EM   G+
Sbjct: 245 IDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGL 304

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+  TY  L+  +        A  L   +  +      +  N A +  L+     +G +
Sbjct: 305 KPDCYTYGSLLNYLCNNGRCREARFLFDSMIRK-----GIKPNVAIYGILIHGYATKGAL 359

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E+  +   M +     +      +  +  +      A  +   M+++GL+P +V+Y ++
Sbjct: 360 SEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNYGAL 419

Query: 181 VHGLCKHG----GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFML 236
           +  LCK G      ++  Q++ EG+     P+   +  LV GLC     EKA++    ML
Sbjct: 420 IDALCKLGRVDDAVLKFNQMMNEGVA----PNIFVFNSLVYGLCTVDKWEKAKEFYFEML 475

Query: 237 SKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIE 296
           ++         N  L  LC      +   ++  M +   +P VI+  T+I G C +GRI+
Sbjct: 476 NQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPGVISYTTLIGGHCLVGRID 535

Query: 297 EALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
           EA K L+ M++     PD  T+ T++ G    GRI +A   +++ M + G +PG+VTY+ 
Sbjct: 536 EAAKSLDVMLSVGL-KPDEWTYNTLLHGYCRAGRIDDAYG-VFREMLRNGITPGVVTYST 593

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416
           +L GLF  RR  EAKE++  M+  G   +   Y I+++GL ++N +DEA + +  +    
Sbjct: 594 ILHGLFTTRRFSEAKELYLNMITSGKQWNIWIYNIILNGLSKNNCVDEAFKLFQSLCSKD 653

Query: 417 NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAY 476
              +   +  MI  L +SG+  +A+H    +   G+ P++  Y ++ +   +     E  
Sbjct: 654 FQLEITTFNIMIGALFKSGRNEDAMHLFATISSYGLVPDVFTYCLIAENLIEEGYLEEFD 713

Query: 477 QILREMRKNGLNPDAVTWRILDKL 500
            +   M K+G  P++   R+L+ L
Sbjct: 714 DLFSAMEKSGTTPNS---RMLNAL 734



 Score =  178 bits (451), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 129/529 (24%), Positives = 230/529 (43%), Gaps = 45/529 (8%)

Query: 4   LCGLSRVGEAHKLFF---DMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
            C   R  EA +L     D + R   PNVVSY  +I+G+   G++D AY +F EM   G+
Sbjct: 175 FCNEKRAEEALELLHMMADSQGRSCPPNVVSYAIVINGFFTEGQVDKAYNLFLEMMDRGI 234

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +TY+ ++ G+ + + V+RA  +  ++ ++      +  +N  +  L+      G  
Sbjct: 235 QPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDK-----GVKPDNDTYNCLIHGYLSIGKW 289

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            EV R+ E+M       + +  G +++ LC +GR   A  +   M ++G+ P++  Y  +
Sbjct: 290 KEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFLFDSMIRKGIKPNVAIYGIL 349

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEH------------------------------ 210
           +HG    G     + LL   ++ G  P  H                              
Sbjct: 350 IHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGL 409

Query: 211 -----TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 265
                 Y  L++ LC    ++ A      M+++       + N  +  LC +    +   
Sbjct: 410 SPDVVNYGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKE 469

Query: 266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 325
               ML    +PDV+  NT++   C  G++ +A +++ D++      P  +++TT+I G 
Sbjct: 470 FYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLI-DLMERVGTRPGVISYTTLIGGH 528

Query: 326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 385
             VGRI EA   L  VM   G  P   TYN +L G  R  R+++A  VF  ML  G+   
Sbjct: 529 CLVGRIDEAAKSL-DVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPG 587

Query: 386 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY 445
             TY+ ++ GL  + +  EAK  + +++      + ++Y  ++ GL ++  + EA     
Sbjct: 588 VVTYSTILHGLFTTRRFSEAKELYLNMITSGKQWNIWIYNIILNGLSKNNCVDEAFKLFQ 647

Query: 446 ELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
            L        I  +N++I    K     +A  +   +   GL PD  T+
Sbjct: 648 SLCSKDFQLEITTFNIMIGALFKSGRNEDAMHLFATISSYGLVPDVFTY 696



 Score =  158 bits (399), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 121/464 (26%), Positives = 208/464 (44%), Gaps = 44/464 (9%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   R  EA  LF  M  +G  PNV  Y  LIHGY   G +   + + + M   G+
Sbjct: 315 LNYLCNNGRCREARFLFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGL 374

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+   ++++     +   ++ A      ++ +MK++  LS +   +  L+D+LC+ G V
Sbjct: 375 SPDHHIFNIIFTAYAKKAMIDEA----MHIFNKMKQQ-GLSPDVVNYGALIDALCKLGRV 429

Query: 121 NE-VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           ++ V +  + M +G + N  F    ++  LC   +   A    + M  +G+ P +V +N+
Sbjct: 430 DDAVLKFNQMMNEGVAPNI-FVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNT 488

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           I+  LC  G  M+A +L++   + G  P   +Y  L+ G C    +++A K L  MLS  
Sbjct: 489 ILCNLCTKGQVMKAQRLIDLMERVGTRPGVISYTTLIGGHCLVGRIDEAAKSLDVMLS-- 546

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                                               +PD  T NT+++G+C+ GRI++A 
Sbjct: 547 ---------------------------------VGLKPDEWTYNTLLHGYCRAGRIDDAY 573

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
            V  +M+      P  VT++TI+ GL    R  EA  L Y  M   G    I  YN +L 
Sbjct: 574 GVFREMLRNGI-TPGVVTYSTILHGLFTTRRFSEAKEL-YLNMITSGKQWNIWIYNIILN 631

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
           GL +   V+EA ++F  +       + TT+ I+I  L +S + ++A   +  I     + 
Sbjct: 632 GLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALFKSGRNEDAMHLFATISSYGLVP 691

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463
           D + Y  + + L   G + E       +  SG TPN    N ++
Sbjct: 692 DVFTYCLIAENLIEEGYLEEFDDLFSAMEKSGTTPNSRMLNALV 735



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 129/515 (25%), Positives = 223/515 (43%), Gaps = 46/515 (8%)

Query: 26  VPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANV 85
            P+  +Y+ LI  +CR G ++  +  F  +   G   N++  + L++G+    D +R   
Sbjct: 91  TPDPCTYSILIGCFCRMGRLEHGFATFGLILKSGWRVNNIVINQLLKGLC---DAKRLCE 147

Query: 86  LMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP--QGKSVNEEFAC- 142
            M  L +RM E    + +  ++  L+   C E    E   +   M   QG+S        
Sbjct: 148 AMDILVKRMPEL-GCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSY 206

Query: 143 GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQ 202
             +I+     G+   A  +   M  RG+ P++V+Y +++ GLCK     RA  + ++ I 
Sbjct: 207 AIVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMID 266

Query: 203 FGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTE 262
            G  P   TY  L+ G       ++  ++L+ M +             L  LC      E
Sbjct: 267 KGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCRE 326

Query: 263 LLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTII 322
              +   M++   +P+V     +I+G+   G + E   +LN MV     +PD   F  I 
Sbjct: 327 ARFLFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGL-SPDHHIFNIIF 385

Query: 323 FGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGV 382
                   I EA+++ +  M Q+G SP +V Y A++  L +L RV++A   FN M+  GV
Sbjct: 386 TAYAKKAMIDEAMHI-FNKMKQQGLSPDVVNYGALIDALCKLGRVDDAVLKFNQMMNEGV 444

Query: 383 VADSTTYAIVIDGLCESNQLDEAKRFW---------DDIVWPSNIHDNYV---------- 423
             +   +  ++ GLC  ++ ++AK F+          D+V+ + I  N            
Sbjct: 445 APNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQR 504

Query: 424 ----------------YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGAC 467
                           Y  +I G C  G+I EA   L  ++  G+ P+   YN ++ G C
Sbjct: 505 LIDLMERVGTRPGVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYC 564

Query: 468 KLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
           +     +AY + REM +NG+ P  VT+  +  LHG
Sbjct: 565 RAGRIDDAYGVFREMLRNGITPGVVTYSTI--LHG 597



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 90/331 (27%), Positives = 155/331 (46%), Gaps = 39/331 (11%)

Query: 170 LTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKAR 229
           +TP   +Y+ ++   C+ G     +      ++ G+  +      L++GLC         
Sbjct: 90  VTPDPCTYSILIGCFCRMGRLEHGFATFGLILKSGWRVNNIVINQLLKGLC--------- 140

Query: 230 KVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLV-FMLQTQCQPDVITLNTVING 288
                       D  R+C              E +++LV  M +  C PDV++ NT++ G
Sbjct: 141 ------------DAKRLC--------------EAMDILVKRMPELGCTPDVVSYNTLLKG 174

Query: 289 FCKMGRIEEALKVLNDMV--AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
           FC   R EEAL++L+ M    G+ C P+ V++  +I G    G++ +A NL  ++M  RG
Sbjct: 175 FCNEKRAEEALELLHMMADSQGRSCPPNVVSYAIVINGFFTEGQVDKAYNLFLEMM-DRG 233

Query: 347 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
             P +VTY  V+ GL + + V+ A+ VF  M+  GV  D+ TY  +I G     +  E  
Sbjct: 234 IQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVV 293

Query: 407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466
           R  +++       D Y Y +++  LC +G+  EA      ++  G+ PN+  Y ++I G 
Sbjct: 294 RMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFLFDSMIRKGIKPNVAIYGILIHGY 353

Query: 467 CKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
                  E + +L  M +NGL+PD   + I+
Sbjct: 354 ATKGALSEMHDLLNLMVENGLSPDHHIFNII 384



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 69/237 (29%), Positives = 122/237 (51%), Gaps = 6/237 (2%)

Query: 262 ELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTI 321
            L N ++     +  PD  T + +I  FC+MGR+E        ++   +   + +    +
Sbjct: 77  SLFNRMIRECTIKVTPDPCTYSILIGCFCRMGRLEHGFATFGLILKSGW-RVNNIVINQL 135

Query: 322 IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCML--- 378
           + GL +  R+ EA+++L + MP+ G +P +V+YN +L+G    +R EEA E+ + M    
Sbjct: 136 LKGLCDAKRLCEAMDILVKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQ 195

Query: 379 GIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV-YAAMIKGLCRSGKI 437
           G     +  +YAIVI+G     Q+D+A   + +++    I  N V Y  +I GLC++  +
Sbjct: 196 GRSCPPNVVSYAIVINGFFTEGQVDKAYNLFLEMM-DRGIQPNVVTYTTVIDGLCKAQVV 254

Query: 438 HEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
             A     +++D GV P+   YN +I G   +   +E  ++L EM  +GL PD  T+
Sbjct: 255 DRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTY 311



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 84/362 (23%), Positives = 150/362 (41%), Gaps = 42/362 (11%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC L RV +A   F  M + G  PN+  + +L++G C   + + A + + EM + G+
Sbjct: 420 IDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGI 479

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +                                         F  ++ +LC +G V
Sbjct: 480 RPDVV----------------------------------------FFNTILCNLCTKGQV 499

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +  R+ + M +  +     +   +I   C  GR   A++ + VM   GL P   +YN++
Sbjct: 500 MKAQRLIDLMERVGTRPGVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTL 559

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +HG C+ G    AY +  E ++ G  P   TY  ++ GL       +A+++   M++   
Sbjct: 560 LHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEAKELYLNMITSGK 619

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                I NI L  L       E   +   +     Q ++ T N +I    K GR E+A+ 
Sbjct: 620 QWNIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALFKSGRNEDAMH 679

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +    ++     PD  T+  I   L+  G ++E  + L+  M + G +P     NA++R 
Sbjct: 680 LFA-TISSYGLVPDVFTYCLIAENLIEEGYLEE-FDDLFSAMEKSGTTPNSRMLNALVRR 737

Query: 361 LF 362
           L 
Sbjct: 738 LL 739



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 5/120 (4%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           R  +A  LF  + S G VP+V +Y  +       G ++    +F  M   G  PNS   +
Sbjct: 673 RNEDAMHLFATISSYGLVPDVFTYCLIAENLIEEGYLEEFDDLFSAMEKSGTTPNSRMLN 732

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
            LVR +L   D+ RA   + KL     +E++ S+  +  A L+  L R+ Y +    + E
Sbjct: 733 ALVRRLLHRGDITRAGAYLCKL-----DEKNFSLEASTTAMLISLLSRDEYHHHATSLPE 787


>gi|414591648|tpg|DAA42219.1| TPA: PPR-814b [Zea mays]
          Length = 827

 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 129/496 (26%), Positives = 240/496 (48%), Gaps = 23/496 (4%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC    + +A      M ++  +PN  +Y  LI+GY  TG+   A +VF EMR   +LP+
Sbjct: 277 LCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPD 336

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVN-----NAAFANLVDSLCREG 118
            +T S+L+  + +   ++ A  +   +  + +  +  S N      A    LVD      
Sbjct: 337 VVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVD------ 390

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGH-MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
            + ++F    D+  G  +  +F   + +I +    G    A  +   MR  G+ P +V+Y
Sbjct: 391 -MTDLF----DLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTY 445

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVL-QFML 236
            +++  LC+ G    A +   + I  G  P ++ Y  L++G C    L KA++++ + M 
Sbjct: 446 RTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMN 505

Query: 237 SKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIE 296
           +   +D     +I +  LC +    +  N+    +     PD +  + +++G+C +G++E
Sbjct: 506 NGMHLDIVFFSSI-INNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKME 564

Query: 297 EALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
           +AL+V + MV+     P+ V + T++ G   +GRI E L+ L++ M QRG  P  + Y+ 
Sbjct: 565 KALRVFDAMVSAGI-EPNVVVYCTLVNGYCKIGRIDEGLS-LFREMLQRGIKPSTILYSI 622

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416
           ++ GLF+  R   AK  F+ M   G+  D  TY IV+ GL ++   DEA   + ++    
Sbjct: 623 IIDGLFQAGRTVPAKMKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKEL-RAM 681

Query: 417 NIHDNYV-YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREA 475
           N+  N +    MI G+ ++ ++ EA      +  S + PN+V Y+++I    K  +  EA
Sbjct: 682 NVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPNVVTYSIMITNLIKEGLVEEA 741

Query: 476 YQILREMRKNGLNPDA 491
             +   M+  G  P++
Sbjct: 742 EDMFSSMQNAGCEPNS 757



 Score =  171 bits (434), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 131/537 (24%), Positives = 239/537 (44%), Gaps = 50/537 (9%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHV--PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHC 58
           +  LC   + G+A  L   M   G V  PNVV+Y T+I G+ + G+++ A  +F EM   
Sbjct: 202 LKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQR 261

Query: 59  GVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREG 118
           G+ P+ +TY+ +V  + + R +++A   +     R    + +  NN  + NL+      G
Sbjct: 262 GIPPDLVTYNSVVHALCKARAMDKAEAFL-----RQMVNKRVLPNNWTYNNLIYGYSSTG 316

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
              E  R+ ++M +   + +      ++ SLC+ G+   A  V   M  +G  P + SYN
Sbjct: 317 QWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYN 376

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS- 237
            +++G    G  +    L +  +  G  P  +T+ VL++       L+KA  +   M   
Sbjct: 377 IMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDH 436

Query: 238 --KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPD----------------- 278
             K DV   R     + ALC I    + +     M+     PD                 
Sbjct: 437 GVKPDVVTYRTV---IAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSL 493

Query: 279 ------------------VITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTT 320
                             ++  +++IN  CK+GR+ +A  +  D+       PDAV ++ 
Sbjct: 494 LKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIF-DLTVNVGLHPDAVVYSM 552

Query: 321 IIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI 380
           ++ G   VG++++AL + +  M   G  P +V Y  ++ G  ++ R++E   +F  ML  
Sbjct: 553 LMDGYCLVGKMEKALRV-FDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQR 611

Query: 381 GVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEA 440
           G+   +  Y+I+IDGL ++ +   AK  + ++       D   Y  +++GL ++    EA
Sbjct: 612 GIKPSTILYSIIIDGLFQAGRTVPAKMKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEA 671

Query: 441 VHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           +    EL    V  NI+  N +IDG  +     EA  +   + ++ L P+ VT+ I+
Sbjct: 672 IFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPNVVTYSIM 728



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 121/506 (23%), Positives = 228/506 (45%), Gaps = 42/506 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M  LC   ++ EA  +F  M  +G  P+V SY  +++GY   G +     +FD M   G+
Sbjct: 344 MGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGI 403

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+  T++VL++       +++A ++  ++      +  +  +   +  ++ +LCR G +
Sbjct: 404 APDFYTFNVLIKAYANCGMLDKAMIIFNEM-----RDHGVKPDVVTYRTVIAALCRIGKM 458

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           ++       M       +++A   +I   C  G    A  ++  +   G+   +V ++SI
Sbjct: 459 DDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSI 518

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++ LCK G  M A  + +  +  G  P    Y +L++G C    +EKA +V   M+S   
Sbjct: 519 INNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVS--- 575

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                              +P+V+   T++NG+CK+GRI+E L 
Sbjct: 576 --------------------------------AGIEPNVVVYCTLVNGYCKIGRIDEGLS 603

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +  +M+  +   P  + ++ II GL   GR   A  + +  M + G +  I TYN VLRG
Sbjct: 604 LFREMLQ-RGIKPSTILYSIIIDGLFQAGRTVPA-KMKFHEMTESGIAMDICTYNIVLRG 661

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           LF+ R  +EA  +F  +  + V  +  T   +IDG+ ++ +++EAK  +  I     + +
Sbjct: 662 LFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPN 721

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              Y+ MI  L + G + EA      + ++G  PN    N V+    K +    A   L 
Sbjct: 722 VVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVRELLKKNEIVRAGAYLS 781

Query: 481 EMRKNGLNPDAVTWRILDKLHGNRGN 506
           ++ +   + + +T  +L  L  ++G 
Sbjct: 782 KIDERNFSLEHLTAMLLVDLFSSKGT 807



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 127/490 (25%), Positives = 226/490 (46%), Gaps = 15/490 (3%)

Query: 13  AHKLFFDMKSRGHVPNVVS-----YTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTY 67
           A  LF    SR   P V+S     Y  L+    R    ++A   F ++   G+  N +  
Sbjct: 103 AVALFNRAASRAQGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIA 162

Query: 68  SVLVRGVLRTRDVERA-NVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRI 126
           + L+ G    +  + A ++L+ +  E     +  S     ++ L+ SLC +G   +   +
Sbjct: 163 NHLLEGFCEAKRTDEALDILLHRTPELGCVPDVFS-----YSILLKSLCDQGKSGQADDL 217

Query: 127 AEDMPQGKSVNEE--FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
              M +G +V      A   +ID   + G  + A  +   M +RG+ P LV+YNS+VH L
Sbjct: 218 LRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHAL 277

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
           CK     +A   L + +    LP+  TY  L+ G       ++A +V + M     +   
Sbjct: 278 CKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDV 337

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
              ++ + +LC      E  +V   M      PDV + N ++NG+   G + + +  L D
Sbjct: 338 VTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVD-MTDLFD 396

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
           ++ G   APD  TF  +I    N G + +A+ +++  M   G  P +VTY  V+  L R+
Sbjct: 397 LMLGDGIAPDFYTFNVLIKAYANCGMLDKAM-IIFNEMRDHGVKPDVVTYRTVIAALCRI 455

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY 424
            ++++A E FN M+  GV  D   Y  +I G C    L +AK    +I+      D   +
Sbjct: 456 GKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFF 515

Query: 425 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484
           +++I  LC+ G++ +A +     V+ G+ P+ V Y++++DG C +    +A ++   M  
Sbjct: 516 SSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVS 575

Query: 485 NGLNPDAVTW 494
            G+ P+ V +
Sbjct: 576 AGIEPNVVVY 585



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 134/509 (26%), Positives = 237/509 (46%), Gaps = 26/509 (5%)

Query: 6   GLSRVGEAHKLFFDMKSRGHVP----NVVSYTTLI-----HGYCRTGEMDVAYKVFDEM- 55
           G  R  EAH L  +++ RG  P    ++  +   +        CR+G   +A  +F+   
Sbjct: 54  GTLRPEEAHDLLDELQRRG-TPVLERDLNGFLAALARAPSSAACRSGPA-LAVALFNRAA 111

Query: 56  -RHCG---VLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLV 111
            R  G   + P S TY++L+    R    E A     +L         L VN     +L+
Sbjct: 112 SRAQGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLR-----TGLRVNIIIANHLL 166

Query: 112 DSLCREGYVNEVFRIA-EDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGL 170
           +  C     +E   I     P+   V + F+   ++ SLC  G++  A  ++ +M + G 
Sbjct: 167 EGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGA 226

Query: 171 --TPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKA 228
             +P++V+YN+++ G  K G   +A  L +E +Q G  P   TY  +V  LC    ++KA
Sbjct: 227 VCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKA 286

Query: 229 RKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVING 288
              L+ M++K+ +      N  +          E + V   M +    PDV+TL+ ++  
Sbjct: 287 EAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGS 346

Query: 289 FCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYS 348
            CK G+I+EA  V  D +A K   PD  ++  ++ G    G + +  +L + +M   G +
Sbjct: 347 LCKYGKIKEARDVF-DTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDL-FDLMLGDGIA 404

Query: 349 PGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRF 408
           P   T+N +++       +++A  +FN M   GV  D  TY  VI  LC   ++D+A   
Sbjct: 405 PDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEK 464

Query: 409 WDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACK 468
           ++ ++      D Y Y  +I+G C  G + +A   + E++++G+  +IV ++ +I+  CK
Sbjct: 465 FNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCK 524

Query: 469 LSMKREAYQILREMRKNGLNPDAVTWRIL 497
           L    +A  I       GL+PDAV + +L
Sbjct: 525 LGRVMDAQNIFDLTVNVGLHPDAVVYSML 553



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 125/238 (52%), Gaps = 3/238 (1%)

Query: 270 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG 329
           +L+T  + ++I  N ++ GFC+  R +EAL +L        C PD  +++ ++  L + G
Sbjct: 150 LLRTGLRVNIIIANHLLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQG 209

Query: 330 RIQEALNLLYQVMPQRGY--SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADST 387
           +  +A +LL ++M + G   SP +V YN V+ G F+   V +A ++F  M+  G+  D  
Sbjct: 210 KSGQADDLL-RMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLV 268

Query: 388 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYEL 447
           TY  V+  LC++  +D+A+ F   +V    + +N+ Y  +I G   +G+  EAV    E+
Sbjct: 269 TYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEM 328

Query: 448 VDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
               + P++V  ++++   CK    +EA  +   M   G NPD  ++ I+   +  +G
Sbjct: 329 RRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKG 386



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 61/125 (48%), Gaps = 5/125 (4%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D +    RV EA  LF  +     VPNVV+Y+ +I    + G ++ A  +F  M++ G 
Sbjct: 694 IDGMFQTRRVEEAKDLFASISRSRLVPNVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGC 753

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PNS   + +VR +L+  ++ RA   + K+ ER     + S+ +     LVD    +G  
Sbjct: 754 EPNSRLLNHVVRELLKKNEIVRAGAYLSKIDER-----NFSLEHLTAMLLVDLFSSKGTC 808

Query: 121 NEVFR 125
            E  R
Sbjct: 809 REQIR 813


>gi|334188438|ref|NP_200395.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332009303|gb|AED96686.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1136

 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 120/493 (24%), Positives = 231/493 (46%), Gaps = 6/493 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC  +    A   +  MK  G     ++YT +I G C+ G +D A  + +EM   G+
Sbjct: 415 LDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGI 474

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TYS L+ G  +    + A  ++ +++        LS N   ++ L+ + CR G +
Sbjct: 475 DPDIVTYSALINGFCKVGRFKTAKEIVCRIYR-----VGLSPNGIIYSTLIYNCCRMGCL 529

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E  RI E M       + F    ++ SLC++G+   A   +  M   G+ P+ VS++ +
Sbjct: 530 KEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCL 589

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++G    G  ++A+ + +E  + G+ P+  TY  L++GLC    L +A K L+ + +   
Sbjct: 590 INGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPA 649

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
              T + N  L A+C   N  + +++   M+Q    PD  T  ++I+G C+ G+   A+ 
Sbjct: 650 AVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAIL 709

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
              +  A     P+ V +T  + G+   G+ +  +    Q M   G++P IVT NA++ G
Sbjct: 710 FAKEAEARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQ-MDNLGHTPDIVTTNAMIDG 768

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
             R+ ++E+  ++   M       + TTY I++ G  +   +  +   +  I+    + D
Sbjct: 769 YSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPD 828

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
                +++ G+C S  +   +  L   +  GV  +   +N++I   C       A+ +++
Sbjct: 829 KLTCHSLVLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWAFDLVK 888

Query: 481 EMRKNGLNPDAVT 493
            M   G++ D  T
Sbjct: 889 VMTSLGISLDKDT 901



 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 131/528 (24%), Positives = 232/528 (43%), Gaps = 41/528 (7%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC      ++  L   M+  G+ P +V+Y T++H YC+ G    A ++ D M+  GV
Sbjct: 240 INVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGV 299

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEED--------------------- 99
             +  TY++L+  + R+  + +  +L+  + +RM    +                     
Sbjct: 300 DADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQ 359

Query: 100 ---------LSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC 150
                    LS N+  F  L+D    EG   E  ++   M        E + G ++D LC
Sbjct: 360 LLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLC 419

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
           ++     A      M++ G+    ++Y  ++ GLCK+G    A  LL E  + G  P   
Sbjct: 420 KNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIV 479

Query: 211 TYKVLVEGLCGESDLEKARKVL----QFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 266
           TY  L+ G C     + A++++    +  LS   +  + +     R  CL K    +   
Sbjct: 480 TYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCL-KEAIRIYEA 538

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
           ++    T+   D  T N ++   CK G++ EA + +  M +     P+ V+F  +I G  
Sbjct: 539 MILEGHTR---DHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGIL-PNTVSFDCLINGYG 594

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
           N G   +A + ++  M + G+ P   TY ++L+GL +   + EA++    +  +    D+
Sbjct: 595 NSGEGLKAFS-VFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDT 653

Query: 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE 446
             Y  ++  +C+S  L +A   + ++V  S + D+Y Y ++I GLCR GK   A+ F  E
Sbjct: 654 VMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKE 713

Query: 447 LVDSG-VTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVT 493
               G V PN V Y   +DG  K    +       +M   G  PD VT
Sbjct: 714 AEARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVT 761



 Score =  167 bits (424), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 123/524 (23%), Positives = 243/524 (46%), Gaps = 44/524 (8%)

Query: 10  VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSV 69
           + ++ ++F  M   G  P+V +   ++    ++GE    +    EM    + P+  T+++
Sbjct: 179 IQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKICPDVATFNI 238

Query: 70  LVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAED 129
           L+  +      E+++ LM K+     E+   +     +  ++   C++G       + + 
Sbjct: 239 LINVLCAEGSFEKSSYLMQKM-----EKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDH 293

Query: 130 MPQGKSVNEEFACGHM-IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
           M + K V+ +    +M I  LCRS R      ++  MRKR + P+ V+YN++++G    G
Sbjct: 294 M-KSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEG 352

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
             + A QLL E + FG  P+  T+  L++G   E + ++A K+   M +K          
Sbjct: 353 KVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYG 412

Query: 249 IYLRALC---------------------------------LIKNP--TELLNVLVFMLQT 273
           + L  LC                                 L KN    E + +L  M + 
Sbjct: 413 VLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKD 472

Query: 274 QCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQE 333
              PD++T + +INGFCK+GR + A +++  +      +P+ + ++T+I+    +G ++E
Sbjct: 473 GIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGL-SPNGIIYSTLIYNCCRMGCLKE 531

Query: 334 ALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVI 393
           A+  +Y+ M   G++    T+N ++  L +  +V EA+E   CM   G++ ++ ++  +I
Sbjct: 532 AIR-IYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLI 590

Query: 394 DGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVT 453
           +G   S +  +A   +D++    +    + Y +++KGLC+ G + EA  FL  L      
Sbjct: 591 NGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAA 650

Query: 454 PNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            + V YN ++   CK     +A  +  EM +  + PD+ T+  L
Sbjct: 651 VDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSL 694



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 124/496 (25%), Positives = 215/496 (43%), Gaps = 8/496 (1%)

Query: 3    QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
             LC   +V EA +    M S G +PN VS+  LI+GY  +GE   A+ VFDEM   G  P
Sbjct: 557  SLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHP 616

Query: 63   NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
               TY  L++G+ +   +  A   +  L          +V+   +  L+ ++C+ G + +
Sbjct: 617  TFFTYGSLLKGLCKGGHLREAEKFLKSL-----HAVPAAVDTVMYNTLLTAMCKSGNLAK 671

Query: 123  VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRG-LTPSLVSYNSIV 181
               +  +M Q   + + +    +I  LCR G+   A         RG + P+ V Y   V
Sbjct: 672  AVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKEAEARGNVLPNKVMYTCFV 731

Query: 182  HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
             G+ K G         E+    G+ P   T   +++G      +EK   +L  M ++   
Sbjct: 732  DGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGG 791

Query: 242  DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
                  NI L      K+ +    +   ++     PD +T ++++ G C+   +E  LK+
Sbjct: 792  PNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSLVLGICESNMLEIGLKI 851

Query: 302  LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
            L   +  +    D  TF  +I      G I  A +L+ +VM   G S    T +A++  L
Sbjct: 852  LKAFIC-RGVEVDRYTFNMLISKCCANGEINWAFDLV-KVMTSLGISLDKDTCDAMVSVL 909

Query: 362  FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
             R  R +E++ V + M   G+  +S  Y  +I+GLC    +  A    ++++       N
Sbjct: 910  NRNHRFQESRMVLHEMSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPN 969

Query: 422  YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
               +AM++ L + GK  EA   L  ++   + P I  +  ++   CK     EA ++   
Sbjct: 970  VAESAMVRALAKCGKADEATLLLRFMLKMKLVPTIASFTTLMHLCCKNGNVIEALELRVV 1029

Query: 482  MRKNGLNPDAVTWRIL 497
            M   GL  D V++ +L
Sbjct: 1030 MSNCGLKLDLVSYNVL 1045



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 115/444 (25%), Positives = 206/444 (46%), Gaps = 49/444 (11%)

Query: 103 NNAAFANLVDSLCREGYVN---EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGAS 159
           N + +  L+    REG +    E+FR+        SV   + C  ++ S+ +SG +    
Sbjct: 162 NPSVYDILIRVYLREGMIQDSLEIFRLMGLYGFNPSV---YTCNAILGSVVKSGEDVSVW 218

Query: 160 RVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGL 219
             +  M KR + P + ++N +++ LC  G   ++  L+++  + GY P+  TY  ++   
Sbjct: 219 SFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWY 278

Query: 220 CGESDLEKARKVLQFMLSKK-DVDRTRIC--NIYLRALCLIKNPTELLNVLVFMLQTQCQ 276
           C +   + A ++L  M SK  D D   +C  N+ +  LC      +   +L  M +    
Sbjct: 279 CKKGRFKAAIELLDHMKSKGVDAD---VCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIH 335

Query: 277 PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALN 336
           P+ +T NT+INGF   G++  A ++LN+M++    +P+ VTF  +I G ++ G  +EAL 
Sbjct: 336 PNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGL-SPNHVTFNALIDGHISEGNFKEALK 394

Query: 337 LLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 396
           + Y +M  +G +P  V+Y  +L GL +    + A+  +  M   GV     TY  +IDGL
Sbjct: 395 MFY-MMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGL 453

Query: 397 CESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGK-------------------- 436
           C++  LDEA    +++       D   Y+A+I G C+ G+                    
Sbjct: 454 CKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNG 513

Query: 437 ---------------IHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
                          + EA+     ++  G T +   +NV++   CK     EA + +R 
Sbjct: 514 IIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRC 573

Query: 482 MRKNGLNPDAVTWRILDKLHGNRG 505
           M  +G+ P+ V++  L   +GN G
Sbjct: 574 MTSDGILPNTVSFDCLINGYGNSG 597



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 128/577 (22%), Positives = 229/577 (39%), Gaps = 78/577 (13%)

Query: 1    MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
            +D LC    + EA  L  +M   G  P++V+Y+ LI+G+C+ G    A ++   +   G+
Sbjct: 450  IDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGL 509

Query: 61   LPNSLTYSVLVRGVLR-------------------TRDVERANVLMFKL----------- 90
             PN + YS L+    R                   TRD    NVL+  L           
Sbjct: 510  SPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEE 569

Query: 91   WERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC 150
            + R    + +  N  +F  L++     G   + F + ++M +       F  G ++  LC
Sbjct: 570  FMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLC 629

Query: 151  RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
            + G    A + +  +         V YN+++  +CK G   +A  L  E +Q   LP  +
Sbjct: 630  KGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSY 689

Query: 211  TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIK---NPTELLNVL 267
            TY  L+ GLC      K + V+  + +K+   R  +    +   C +       +    +
Sbjct: 690  TYTSLISGLC-----RKGKTVIAILFAKEAEARGNVLPNKVMYTCFVDGMFKAGQWKAGI 744

Query: 268  VFMLQTQC---QPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 324
             F  Q       PD++T N +I+G+ +MG+IE+   +L +M   +   P+  T+  ++ G
Sbjct: 745  YFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEM-GNQNGGPNLTTYNILLHG 803

Query: 325  LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL---------------FRLRRVEE 369
                  +  +  LLY+ +   G  P  +T ++++ G+               F  R VE 
Sbjct: 804  YSKRKDVSTSF-LLYRSIILNGILPDKLTCHSLVLGICESNMLEIGLKILKAFICRGVEV 862

Query: 370  AKEVFN--------------------CMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFW 409
             +  FN                     M  +G+  D  T   ++  L  +++  E++   
Sbjct: 863  DRYTFNMLISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQESRMVL 922

Query: 410  DDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKL 469
             ++       ++  Y  +I GLCR G I  A     E++   + P  V  + ++    K 
Sbjct: 923  HEMSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKC 982

Query: 470  SMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
                EA  +LR M K  L P   ++  L  L    GN
Sbjct: 983  GKADEATLLLRFMLKMKLVPTIASFTTLMHLCCKNGN 1019



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 126/519 (24%), Positives = 213/519 (41%), Gaps = 47/519 (9%)

Query: 4    LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            LC    + EA K    + +     + V Y TL+   C++G +  A  +F EM    +LP+
Sbjct: 628  LCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPD 687

Query: 64   SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            S TY+ L+ G+ R    +   V+     +  +   ++  N   +   VD + + G     
Sbjct: 688  SYTYTSLISGLCR----KGKTVIAILFAKEAEARGNVLPNKVMYTCFVDGMFKAGQWKAG 743

Query: 124  FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
                E M       +      MID   R G+    + ++  M  +   P+L +YN ++HG
Sbjct: 744  IYFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHG 803

Query: 184  LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQ-FMLSKKDVD 242
              K      ++ L    I  G LP + T   LV G+C  + LE   K+L+ F+    +VD
Sbjct: 804  YSKRKDVSTSFLLYRSIILNGILPDKLTCHSLVLGICESNMLEIGLKILKAFICRGVEVD 863

Query: 243  RTRICNIYLRALC----------LIKNPTEL---------------LN----------VL 267
            R    N+ +   C          L+K  T L               LN          VL
Sbjct: 864  RYTF-NMLISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQESRMVL 922

Query: 268  VFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLN 327
              M +    P+      +ING C++G I+ A  V  +M+A K C P+ V  + ++  L  
Sbjct: 923  HEMSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPN-VAESAMVRALAK 981

Query: 328  VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADST 387
             G+  EA  LL + M +    P I ++  ++    +   V EA E+   M   G+  D  
Sbjct: 982  CGKADEA-TLLLRFMLKMKLVPTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLV 1040

Query: 388  TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKG-LCRSGKIHEAVHFLYE 446
            +Y ++I GLC    +  A   ++++     + +   Y A+I+G L R      A   L +
Sbjct: 1041 SYNVLITGLCAKGDMALAFELYEEMKGDGFLANATTYKALIRGLLARETAFSGADIILKD 1100

Query: 447  LVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN 485
            L+  G    I   ++  D    L M  E  + L+  +K+
Sbjct: 1101 LLARGF---ITSMSLSQDSHRNLKMAMEKLKALQSNKKD 1136



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/231 (30%), Positives = 99/231 (42%), Gaps = 37/231 (16%)

Query: 276 QPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEAL 335
            P V T N ++    K G        L +M+  K C PD  TF  +I  L   G  +++ 
Sbjct: 195 NPSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKIC-PDVATFNILINVLCAEGSFEKS- 252

Query: 336 NLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG 395
           + L Q M + GY+P IVTYN VL    +  R + A E+ + M   GV AD  TY ++I  
Sbjct: 253 SYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLI-- 310

Query: 396 LCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN 455
                                  HD          LCRS +I +    L ++    + PN
Sbjct: 311 -----------------------HD----------LCRSNRIAKGYLLLRDMRKRMIHPN 337

Query: 456 IVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
            V YN +I+G         A Q+L EM   GL+P+ VT+  L   H + GN
Sbjct: 338 EVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGN 388



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 52/94 (55%), Gaps = 1/94 (1%)

Query: 1    MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
            M   C    V EA +L   M + G   ++VSY  LI G C  G+M +A+++++EM+  G 
Sbjct: 1011 MHLCCKNGNVIEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMALAFELYEEMKGDGF 1070

Query: 61   LPNSLTYSVLVRGVL-RTRDVERANVLMFKLWER 93
            L N+ TY  L+RG+L R      A++++  L  R
Sbjct: 1071 LANATTYKALIRGLLARETAFSGADIILKDLLAR 1104


>gi|297793693|ref|XP_002864731.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310566|gb|EFH40990.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 732

 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 134/497 (26%), Positives = 237/497 (47%), Gaps = 56/497 (11%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M SRG VP+V  Y+ L     + G      K+ DEM   GV PN   Y++ +R + R   
Sbjct: 224 MISRGLVPDVHIYSVLFQCCFKQGFPSKKEKLLDEMTSLGVKPNVYIYTIYIRDLCRENK 283

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
           +E A     K++E MK    +  N   ++ ++D  C+ G + + + + +++   + +   
Sbjct: 284 MEEAE----KMFELMKIH-GVVPNLYTYSAMIDGYCKTGNLRQAYGLYKEILVAELLPNV 338

Query: 140 FACGHMIDSLCRSGRNHGASRVVYV-MRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLE 198
              G ++D  C++ R   A+R ++V M K G+ P+L  YN ++HG CK G  + A  LL 
Sbjct: 339 VVFGTLVDGFCKA-RELVAARSLFVHMVKFGVDPNLYVYNCLIHGQCKSGNMLEAMGLLS 397

Query: 199 EGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIK 258
           E       P   TY +L+ GLC E  L +A ++ Q M +++                   
Sbjct: 398 EMESLNLSPDVFTYTILINGLCTEERLAEANRLFQRMKNER------------------- 438

Query: 259 NPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTF 318
                    +F       P  +T N++I+GFCK   IE+AL + ++M +     P+ +TF
Sbjct: 439 ---------IF-------PSSVTYNSLIHGFCKEYNIEKALDLCSEMTSSG-VEPNIITF 481

Query: 319 TTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCML 378
           +T+I G   V  I+ A+ L ++ M  +G  P +VTY  ++   F+   ++EA  +++ ML
Sbjct: 482 STLIDGYCKVRNIKAAMGLYFE-MTIKGIVPDVVTYTTLIDAHFKEANMKEALRLYSDML 540

Query: 379 GIGVVADSTTYAIVIDGLCESNQLDEAKRFW---------DDIVWPSNIHDNYV-YAAMI 428
             G+  +  T+A ++DG  +  +L +A  F+           IV  S     YV +  +I
Sbjct: 541 EAGIHPNDHTFACLVDGFWKEGRLSDAIDFYLENNQAATGKSIVQRSCW--KYVGFTCLI 598

Query: 429 KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLN 488
           +GLC++G I  A  F  ++   GVTP+I  Y  ++    +     +   +  +M K G+ 
Sbjct: 599 EGLCQNGYILRASRFFSDMKSGGVTPDIWSYVSMLKAHLREKRITDTMMLHCDMIKTGIL 658

Query: 489 PDAVTWRILDKLHGNRG 505
           P+ +  ++L   +   G
Sbjct: 659 PNLMVNQLLAMFYQENG 675



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 103/438 (23%), Positives = 189/438 (43%), Gaps = 54/438 (12%)

Query: 76  RTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDM---PQ 132
           R R       +  +L+  +++ +    +   F+ L+      G   +   ++ +M   P 
Sbjct: 138 RLRRYSEPTNISHRLFNALEDIQSPKFSIGVFSLLIMEFLEMGLFEDALWVSREMRCSPD 197

Query: 133 GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMR 192
            K      AC  +++ L R  R         +M  RGL P +  Y+ +     K G   +
Sbjct: 198 SK------ACLAILNGLVRRRRFDSVWVDYQLMISRGLVPDVHIYSVLFQCCFKQGFPSK 251

Query: 193 AYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLR 252
             +LL+E    G  P+ + Y + +  LC E+ +E+A K+ + M     V           
Sbjct: 252 KEKLLDEMTSLGVKPNVYIYTIYIRDLCRENKMEEAEKMFELMKIHGVV----------- 300

Query: 253 ALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCA 312
                                   P++ T + +I+G+CK G + +A  +  +++  +   
Sbjct: 301 ------------------------PNLYTYSAMIDGYCKTGNLRQAYGLYKEILVAEL-L 335

Query: 313 PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKE 372
           P+ V F T++ G      +  A +L    M + G  P +  YN ++ G  +   + EA  
Sbjct: 336 PNVVVFGTLVDGFCKARELVAARSLFVH-MVKFGVDPNLYVYNCLIHGQCKSGNMLEAMG 394

Query: 373 VFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFW----DDIVWPSNIHDNYVYAAMI 428
           + + M  + +  D  TY I+I+GLC   +L EA R +    ++ ++PS++     Y ++I
Sbjct: 395 LLSEMESLNLSPDVFTYTILINGLCTEERLAEANRLFQRMKNERIFPSSV----TYNSLI 450

Query: 429 KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLN 488
            G C+   I +A+    E+  SGV PNI+ ++ +IDG CK+   + A  +  EM   G+ 
Sbjct: 451 HGFCKEYNIEKALDLCSEMTSSGVEPNIITFSTLIDGYCKVRNIKAAMGLYFEMTIKGIV 510

Query: 489 PDAVTWRILDKLHGNRGN 506
           PD VT+  L   H    N
Sbjct: 511 PDVVTYTTLIDAHFKEAN 528



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 106/389 (27%), Positives = 180/389 (46%), Gaps = 13/389 (3%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC  +++ EA K+F  MK  G VPN+ +Y+ +I GYC+TG +  AY ++ E+    +LPN
Sbjct: 278 LCRENKMEEAEKMFELMKIHGVVPNLYTYSAMIDGYCKTGNLRQAYGLYKEILVAELLPN 337

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            + +  LV G  + R++  A  L   +  +   + +L V N     L+   C+ G + E 
Sbjct: 338 VVVFGTLVDGFCKARELVAARSLFVHM-VKFGVDPNLYVYNC----LIHGQCKSGNMLEA 392

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             +  +M       + F    +I+ LC   R   A+R+   M+   + PS V+YNS++HG
Sbjct: 393 MGLLSEMESLNLSPDVFTYTILINGLCTEERLAEANRLFQRMKNERIFPSSVTYNSLIHG 452

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK     +A  L  E    G  P+  T+  L++G C   +++ A  +   M  K  V  
Sbjct: 453 FCKEYNIEKALDLCSEMTSSGVEPNIITFSTLIDGYCKVRNIKAAMGLYFEMTIKGIVPD 512

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL- 302
                  + A     N  E L +   ML+    P+  T   +++GF K GR+ +A+    
Sbjct: 513 VVTYTTLIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSDAIDFYL 572

Query: 303 --NDMVAGKFCAPDA----VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
             N    GK     +    V FT +I GL   G I  A +  +  M   G +P I +Y +
Sbjct: 573 ENNQAATGKSIVQRSCWKYVGFTCLIEGLCQNGYILRA-SRFFSDMKSGGVTPDIWSYVS 631

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVAD 385
           +L+   R +R+ +   +   M+  G++ +
Sbjct: 632 MLKAHLREKRITDTMMLHCDMIKTGILPN 660



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 80/352 (22%), Positives = 147/352 (41%), Gaps = 34/352 (9%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C    +  A  LF  M   G  PN+  Y  LIHG C++G M  A  +  EM    +
Sbjct: 345 VDGFCKARELVAARSLFVHMVKFGVDPNLYVYNCLIHGQCKSGNMLEAMGLLSEMESLNL 404

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+  TY++L+ G+     +  AN    +L++RMK E     ++  + +L+   C+E  +
Sbjct: 405 SPDVFTYTILINGLCTEERLAEAN----RLFQRMKNERIFP-SSVTYNSLIHGFCKEYNI 459

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +   +  +M              +ID  C+      A  + + M  +G+ P +V+Y ++
Sbjct: 460 EKALDLCSEMTSSGVEPNIITFSTLIDGYCKVRNIKAAMGLYFEMTIKGIVPDVVTYTTL 519

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +    K      A +L  + ++ G  P++HT+  LV+G   E  L  A   + F L    
Sbjct: 520 IDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSDA---IDFYLENNQ 576

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
               +                        ++Q  C    +    +I G C+ G I  A +
Sbjct: 577 AATGKS-----------------------IVQRSCW-KYVGFTCLIEGLCQNGYILRASR 612

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIV 352
             +DM +G    PD  ++ +++   L   RI + + +L+  M + G  P ++
Sbjct: 613 FFSDMKSGG-VTPDIWSYVSMLKAHLREKRITDTM-MLHCDMIKTGILPNLM 662



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 71/291 (24%), Positives = 130/291 (44%), Gaps = 44/291 (15%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   R+ EA++LF  MK+    P+ V+Y +LIHG+C+   ++ A  +  EM   GV
Sbjct: 415 INGLCTEERLAEANRLFQRMKNERIFPSSVTYNSLIHGFCKEYNIEKALDLCSEMTSSGV 474

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +T+S L+ G  + R+++ A  L F++  +      +  +   +  L+D+  +E  +
Sbjct: 475 EPNIITFSTLIDGYCKVRNIKAAMGLYFEMTIK-----GIVPDVVTYTTLIDAHFKEANM 529

Query: 121 NEVFRIAEDMPQG--KSVNEEFACGHMIDSLCRSGR-----------NHGASRVVYVMRK 167
            E  R+  DM +      +  FAC  ++D   + GR           N  A+    V R 
Sbjct: 530 KEALRLYSDMLEAGIHPNDHTFAC--LVDGFWKEGRLSDAIDFYLENNQAATGKSIVQRS 587

Query: 168 RGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEK 227
                  V +  ++ GLC++G  +RA +   +    G  P   +Y  +++    E     
Sbjct: 588 ---CWKYVGFTCLIEGLCQNGYILRASRFFSDMKSGGVTPDIWSYVSMLKAHLRE----- 639

Query: 228 ARKVLQFMLSKKDVDRTRIC---------------NIYLRALCLIKNPTEL 263
            +++   M+   D+ +T I                N YLR+ C + N + L
Sbjct: 640 -KRITDTMMLHCDMIKTGILPNLMVNQLLAMFYQENGYLRSACFLTNSSRL 689



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 94/209 (44%), Gaps = 8/209 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C +  +  A  L+F+M  +G VP+VV+YTTLI  + +   M  A +++ +M   G+
Sbjct: 485 IDGYCKVRNIKAAMGLYFEMTIKGIVPDVVTYTTLIDAHFKEANMKEALRLYSDMLEAGI 544

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNA-----AFANLVDSLC 115
            PN  T++ LV G    ++   ++ + F L           V  +      F  L++ LC
Sbjct: 545 HPNDHTFACLVDGFW--KEGRLSDAIDFYLENNQAATGKSIVQRSCWKYVGFTCLIEGLC 602

Query: 116 REGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLV 175
           + GY+    R   DM  G    + ++   M+ +  R  R      +   M K G+ P+L+
Sbjct: 603 QNGYILRASRFFSDMKSGGVTPDIWSYVSMLKAHLREKRITDTMMLHCDMIKTGILPNLM 662

Query: 176 SYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
             N ++    +  G +R+   L    + G
Sbjct: 663 -VNQLLAMFYQENGYLRSACFLTNSSRLG 690


>gi|296089773|emb|CBI39592.3| unnamed protein product [Vitis vinifera]
          Length = 577

 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 137/470 (29%), Positives = 219/470 (46%), Gaps = 69/470 (14%)

Query: 28  NVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLM 87
           N +    L+  Y + GEMD+A + FD                            RA    
Sbjct: 158 NSIIVDMLVWAYVKNGEMDLALEGFD----------------------------RAGDYG 189

Query: 88  FKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMID 147
           F+L         LS N      ++ SL +EG +  V  + ++M + +          +I+
Sbjct: 190 FRL-------SALSCNP-----MLVSLVKEGRIGVVESVYKEMIRRRIGVNVVTFDVVIN 237

Query: 148 SLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLP 207
            LC+ G+   A  VV  M+  G +PS+++YN+I+ G CK G   +A  LL+E +     P
Sbjct: 238 GLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHP 297

Query: 208 SEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVL 267
           +E T+ +L++G C + ++  A+KV + M  +         N  +  LC      E L + 
Sbjct: 298 NEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQ 357

Query: 268 VFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLN 327
             M     +P+V+T N +INGFCK   ++EA ++L+D +  +  AP+ +TF T+I     
Sbjct: 358 DKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDD-IGKRGLAPNVITFNTLIDAYGK 416

Query: 328 VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADST 387
            GR+ +A  LL  +M   G  P + TYN ++ G  R   V+EA+++   M G G+ AD  
Sbjct: 417 AGRMDDAF-LLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLV 475

Query: 388 TYAIVIDGLCESNQLDEAKRFWDDIVW------PSNIHDNYVYAAMIKGLCRSGKIHEAV 441
           TY I++D LC+  +  +A R  D++         +NI     Y  +IKG C  GK+ EA 
Sbjct: 476 TYNILVDALCKKGETRKAVRLLDEMTLMEKKGRRANI---VTYNVLIKGFCNKGKLEEAN 532

Query: 442 HFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR-EMRKNGLNPD 490
             L E+++ G+ PN                 R  Y ILR EM + G  PD
Sbjct: 533 RLLNEMLEKGLIPN-----------------RTTYDILRDEMMEKGFIPD 565



 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 108/361 (29%), Positives = 188/361 (52%), Gaps = 5/361 (1%)

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
            +C  M+ SL + GR      V   M +R +  ++V+++ +++GLCK G   +A  ++E+
Sbjct: 195 LSCNPMLVSLVKEGRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVED 254

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
              +G+ PS  TY  +++G C    + KA  +L+ M++K+        NI +   C  +N
Sbjct: 255 MKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDEN 314

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
            T    V   M +   QP+V+T N++ING C  G+++EAL  L D ++G    P+ VT+ 
Sbjct: 315 VTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALG-LQDKMSGMGLKPNVVTYN 373

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
            +I G      ++EA  +L  +  +RG +P ++T+N ++    +  R+++A  + + ML 
Sbjct: 374 ALINGFCKKKMLKEAREMLDDI-GKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLD 432

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
            GV  + +TY  +I G C    + EA++   ++       D   Y  ++  LC+ G+  +
Sbjct: 433 TGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRK 492

Query: 440 AVHFLYELV---DSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRI 496
           AV  L E+      G   NIV YNV+I G C      EA ++L EM + GL P+  T+ I
Sbjct: 493 AVRLLDEMTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDI 552

Query: 497 L 497
           L
Sbjct: 553 L 553



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 105/392 (26%), Positives = 188/392 (47%), Gaps = 43/392 (10%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           R+G    ++ +M  R    NVV++  +I+G C+ G+   A  V ++M+  G  P+ +TY+
Sbjct: 209 RIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYN 268

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
            ++ G  +   + +A+ L+ ++  +      +  N   F  L+D  CR+          E
Sbjct: 269 TIIDGYCKAGKMFKADALLKEMVAKR-----IHPNEITFNILIDGFCRD----------E 313

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
           ++   K V EE                         M+++GL P++V+YNS+++GLC +G
Sbjct: 314 NVTAAKKVFEE-------------------------MQRQGLQPNVVTYNSLINGLCSNG 348

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
               A  L ++    G  P+  TY  L+ G C +  L++AR++L  +  +         N
Sbjct: 349 KLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFN 408

Query: 249 IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 308
             + A        +   +   ML T   P+V T N +I GFC+ G ++EA K+  +M  G
Sbjct: 409 TLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEM-EG 467

Query: 309 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQ--VMPQRGYSPGIVTYNAVLRGLFRLRR 366
                D VT+  ++  L   G  ++A+ LL +  +M ++G    IVTYN +++G     +
Sbjct: 468 NGLKADLVTYNILVDALCKKGETRKAVRLLDEMTLMEKKGRRANIVTYNVLIKGFCNKGK 527

Query: 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE 398
           +EEA  + N ML  G++ + TTY I+ D + E
Sbjct: 528 LEEANRLLNEMLEKGLIPNRTTYDILRDEMME 559



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 93/344 (27%), Positives = 172/344 (50%), Gaps = 9/344 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC + +  +A  +  DMK+ G  P+V++Y T+I GYC+ G+M  A  +  EM    +
Sbjct: 236 INGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRI 295

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +T+++L+ G  R  +V  A     K++E M + + L  N   + +L++ LC  G +
Sbjct: 296 HPNEITFNILIDGFCRDENVTAAK----KVFEEM-QRQGLQPNVVTYNSLINGLCSNGKL 350

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E   + + M              +I+  C+      A  ++  + KRGL P+++++N++
Sbjct: 351 DEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTL 410

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +    K G    A+ L    +  G  P+  TY  L+ G C E ++++ARK+ + M     
Sbjct: 411 IDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGL 470

Query: 241 VDRTRICNIYLRALCL---IKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
                  NI + ALC     +    LL+ +  M +   + +++T N +I GFC  G++EE
Sbjct: 471 KADLVTYNILVDALCKKGETRKAVRLLDEMTLMEKKGRRANIVTYNVLIKGFCNKGKLEE 530

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQV 341
           A ++LN+M+  K   P+  T+  +   ++  G I +    LY V
Sbjct: 531 ANRLLNEMLE-KGLIPNRTTYDILRDEMMEKGFIPDIDGHLYNV 573



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 123/227 (54%), Gaps = 2/227 (0%)

Query: 279 VITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLL 338
            ++ N ++    K GRI     V  +M+  +    + VTF  +I GL  VG+ Q+A +++
Sbjct: 194 ALSCNPMLVSLVKEGRIGVVESVYKEMIRRRI-GVNVVTFDVVINGLCKVGKFQKAGDVV 252

Query: 339 YQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE 398
            + M   G+SP ++TYN ++ G  +  ++ +A  +   M+   +  +  T+ I+IDG C 
Sbjct: 253 -EDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCR 311

Query: 399 SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVC 458
              +  AK+ ++++       +   Y ++I GLC +GK+ EA+    ++   G+ PN+V 
Sbjct: 312 DENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVT 371

Query: 459 YNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
           YN +I+G CK  M +EA ++L ++ K GL P+ +T+  L   +G  G
Sbjct: 372 YNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAG 418


>gi|15237575|ref|NP_198933.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75309191|sp|Q9FLL3.1|PP412_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g41170, mitochondrial; Flags: Precursor
 gi|9759163|dbj|BAB09719.1| salt-inducible protein-like [Arabidopsis thaliana]
 gi|66792708|gb|AAY56456.1| At5g41170 [Arabidopsis thaliana]
 gi|332007267|gb|AED94650.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 527

 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 124/491 (25%), Positives = 225/491 (45%), Gaps = 80/491 (16%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M+  C  S+   A      M   G  P++V++T+LI+G+C    M+ A  + ++M   G+
Sbjct: 114 MNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGI 173

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ + Y+ ++                                        DSLC+ G+V
Sbjct: 174 KPDVVMYTTII----------------------------------------DSLCKNGHV 193

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           N    + + M       +      +++ LC SGR   A  ++  M KR + P ++++N++
Sbjct: 194 NYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNAL 253

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +    K G  + A +L  E I+    P+  TY  L+ G C E  +++AR++   M +K  
Sbjct: 254 IDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMETKG- 312

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                             C PDV+   ++INGFCK  ++++A+K
Sbjct: 313 ----------------------------------CFPDVVAYTSLINGFCKCKKVDDAMK 338

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +  +M + K    + +T+TT+I G   VG+   A  + +  M  RG  P I TYN +L  
Sbjct: 339 IFYEM-SQKGLTGNTITYTTLIQGFGQVGKPNVAQEV-FSHMVSRGVPPNIRTYNVLLHC 396

Query: 361 LFRLRRVEEAKEVFNCMLG---IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 417
           L    +V++A  +F  M      GV  +  TY +++ GLC + +L++A   ++D+     
Sbjct: 397 LCYNGKVKKALMIFEDMQKREMDGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKREM 456

Query: 418 IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQ 477
                 Y  +I+G+C++GK+  AV+    L   GV PN+V Y  +I G  +  +K EA+ 
Sbjct: 457 DIGIITYTIIIQGMCKAGKVKNAVNLFCSLPSKGVKPNVVTYTTMISGLFREGLKHEAHV 516

Query: 478 ILREMRKNGLN 488
           + R+M+++G++
Sbjct: 517 LFRKMKEDGVS 527



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 103/432 (23%), Positives = 201/432 (46%), Gaps = 18/432 (4%)

Query: 65  LTYSVLVRGVLRTRDVERANV--LMFK----LWERMKEEEDLSVNNAAFANLVDSLCREG 118
           L  S  VR     R++ R  +  L F     L+  M E   L  +   F  L++ + +  
Sbjct: 28  LDLSFWVRAFCNYREILRNGLHSLQFNEALDLFTHMVESRPLP-SIIDFTKLLNVIAKMK 86

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
             + V  + + +      ++ + C  +++  C+S + + AS  +  M K G  P +V++ 
Sbjct: 87  KFDVVINLCDHLQIMGVSHDLYTCNLLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFT 146

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
           S+++G C       A  ++ + ++ G  P    Y  +++ LC    +  A  +   M + 
Sbjct: 147 SLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENY 206

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
                  +    +  LC      +  ++L  M + + +PDVIT N +I+ F K G+  +A
Sbjct: 207 GIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDA 266

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
            ++ N+M+     AP+  T+T++I G    G + EA  + Y +M  +G  P +V Y +++
Sbjct: 267 EELYNEMIRMSI-APNIFTYTSLINGFCMEGCVDEARQMFY-LMETKGCFPDVVAYTSLI 324

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVW---P 415
            G  + ++V++A ++F  M   G+  ++ TY  +I G  +  + + A+  +  +V    P
Sbjct: 325 NGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVP 384

Query: 416 SNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD---SGVTPNIVCYNVVIDGACKLSMK 472
            NI     Y  ++  LC +GK+ +A+    ++      GV PNI  YNV++ G C     
Sbjct: 385 PNIR---TYNVLLHCLCYNGKVKKALMIFEDMQKREMDGVAPNIWTYNVLLHGLCYNGKL 441

Query: 473 REAYQILREMRK 484
            +A  +  +MRK
Sbjct: 442 EKALMVFEDMRK 453



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 128/259 (49%), Gaps = 2/259 (0%)

Query: 247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV 306
           CN+ +   C    P    + L  M++   +PD++T  ++INGFC   R+EEA+ ++N MV
Sbjct: 110 CNLLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMV 169

Query: 307 AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 366
                 PD V +TTII  L   G +  AL+L  Q M   G  P +V Y +++ GL    R
Sbjct: 170 EMGI-KPDVVMYTTIIDSLCKNGHVNYALSLFDQ-MENYGIRPDVVMYTSLVNGLCNSGR 227

Query: 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAA 426
             +A  +   M    +  D  T+  +ID   +  +  +A+  +++++  S   + + Y +
Sbjct: 228 WRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTS 287

Query: 427 MIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG 486
           +I G C  G + EA    Y +   G  P++V Y  +I+G CK     +A +I  EM + G
Sbjct: 288 LINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKG 347

Query: 487 LNPDAVTWRILDKLHGNRG 505
           L  + +T+  L +  G  G
Sbjct: 348 LTGNTITYTTLIQGFGQVG 366



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 86/337 (25%), Positives = 159/337 (47%), Gaps = 7/337 (2%)

Query: 169 GLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKA 228
           G++  L + N +++  C+      A   L + ++ G+ P   T+  L+ G C  + +E+A
Sbjct: 102 GVSHDLYTCNLLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEA 161

Query: 229 RKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVING 288
             ++  M+         +    + +LC   +    L++   M     +PDV+   +++NG
Sbjct: 162 MSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNG 221

Query: 289 FCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYS 348
            C  GR  +A  +L  M   K   PD +TF  +I   +  G+  +A  L Y  M +   +
Sbjct: 222 LCNSGRWRDADSLLRGMTKRKI-KPDVITFNALIDAFVKEGKFLDAEEL-YNEMIRMSIA 279

Query: 349 PGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRF 408
           P I TY +++ G      V+EA+++F  M   G   D   Y  +I+G C+  ++D+A + 
Sbjct: 280 PNIFTYTSLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKI 339

Query: 409 WDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACK 468
           + ++       +   Y  +I+G  + GK + A      +V  GV PNI  YNV++   C 
Sbjct: 340 FYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCY 399

Query: 469 LSMKREAYQILREMRK---NGLNPDAVTWRILDKLHG 502
               ++A  I  +M+K   +G+ P+  T+ +L  LHG
Sbjct: 400 NGKVKKALMIFEDMQKREMDGVAPNIWTYNVL--LHG 434



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 98/206 (47%), Gaps = 6/206 (2%)

Query: 294 RIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLL--YQVMPQRGYSPGI 351
           +  EAL +   MV  +   P  + FT ++  +  + +    +NL    Q+M   G S  +
Sbjct: 52  QFNEALDLFTHMVESR-PLPSIIDFTKLLNVIAKMKKFDVVINLCDHLQIM---GVSHDL 107

Query: 352 VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDD 411
            T N ++    +  +   A      M+ +G   D  T+  +I+G C  N+++EA    + 
Sbjct: 108 YTCNLLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQ 167

Query: 412 IVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSM 471
           +V      D  +Y  +I  LC++G ++ A+    ++ + G+ P++V Y  +++G C    
Sbjct: 168 MVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGR 227

Query: 472 KREAYQILREMRKNGLNPDAVTWRIL 497
            R+A  +LR M K  + PD +T+  L
Sbjct: 228 WRDADSLLRGMTKRKIKPDVITFNAL 253



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 73/160 (45%), Gaps = 1/160 (0%)

Query: 354 YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413
           Y  +LR      +  EA ++F  M+    +     +  +++ + +  + D      D + 
Sbjct: 40  YREILRNGLHSLQFNEALDLFTHMVESRPLPSIIDFTKLLNVIAKMKKFDVVINLCDHLQ 99

Query: 414 WPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKR 473
                HD Y    ++   C+S + + A  FL +++  G  P+IV +  +I+G C  +   
Sbjct: 100 IMGVSHDLYTCNLLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRME 159

Query: 474 EAYQILREMRKNGLNPDAVTW-RILDKLHGNRGNDFGLRI 512
           EA  ++ +M + G+ PD V +  I+D L  N   ++ L +
Sbjct: 160 EAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYALSL 199


>gi|8843735|dbj|BAA97283.1| unnamed protein product [Arabidopsis thaliana]
          Length = 1274

 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 120/493 (24%), Positives = 231/493 (46%), Gaps = 6/493 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC  +    A   +  MK  G     ++YT +I G C+ G +D A  + +EM   G+
Sbjct: 375 LDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGI 434

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TYS L+ G  +    + A  ++ +++        LS N   ++ L+ + CR G +
Sbjct: 435 DPDIVTYSALINGFCKVGRFKTAKEIVCRIYRV-----GLSPNGIIYSTLIYNCCRMGCL 489

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E  RI E M       + F    ++ SLC++G+   A   +  M   G+ P+ VS++ +
Sbjct: 490 KEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCL 549

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++G    G  ++A+ + +E  + G+ P+  TY  L++GLC    L +A K L+ + +   
Sbjct: 550 INGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPA 609

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
              T + N  L A+C   N  + +++   M+Q    PD  T  ++I+G C+ G+   A+ 
Sbjct: 610 AVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAIL 669

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
              +  A     P+ V +T  + G+   G+ +  +    Q M   G++P IVT NA++ G
Sbjct: 670 FAKEAEARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQ-MDNLGHTPDIVTTNAMIDG 728

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
             R+ ++E+  ++   M       + TTY I++ G  +   +  +   +  I+    + D
Sbjct: 729 YSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPD 788

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
                +++ G+C S  +   +  L   +  GV  +   +N++I   C       A+ +++
Sbjct: 789 KLTCHSLVLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWAFDLVK 848

Query: 481 EMRKNGLNPDAVT 493
            M   G++ D  T
Sbjct: 849 VMTSLGISLDKDT 861



 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 131/528 (24%), Positives = 232/528 (43%), Gaps = 41/528 (7%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC      ++  L   M+  G+ P +V+Y T++H YC+ G    A ++ D M+  GV
Sbjct: 200 INVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGV 259

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEED--------------------- 99
             +  TY++L+  + R+  + +  +L+  + +RM    +                     
Sbjct: 260 DADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQ 319

Query: 100 ---------LSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC 150
                    LS N+  F  L+D    EG   E  ++   M        E + G ++D LC
Sbjct: 320 LLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLC 379

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
           ++     A      M++ G+    ++Y  ++ GLCK+G    A  LL E  + G  P   
Sbjct: 380 KNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIV 439

Query: 211 TYKVLVEGLCGESDLEKARKVL----QFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 266
           TY  L+ G C     + A++++    +  LS   +  + +     R  CL K    +   
Sbjct: 440 TYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCL-KEAIRIYEA 498

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
           ++    T+   D  T N ++   CK G++ EA + +  M +     P+ V+F  +I G  
Sbjct: 499 MILEGHTR---DHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGI-LPNTVSFDCLINGYG 554

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
           N G   +A + ++  M + G+ P   TY ++L+GL +   + EA++    +  +    D+
Sbjct: 555 NSGEGLKAFS-VFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDT 613

Query: 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE 446
             Y  ++  +C+S  L +A   + ++V  S + D+Y Y ++I GLCR GK   A+ F  E
Sbjct: 614 VMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKE 673

Query: 447 LVDSG-VTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVT 493
               G V PN V Y   +DG  K    +       +M   G  PD VT
Sbjct: 674 AEARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVT 721



 Score =  168 bits (425), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 123/524 (23%), Positives = 243/524 (46%), Gaps = 44/524 (8%)

Query: 10  VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSV 69
           + ++ ++F  M   G  P+V +   ++    ++GE    +    EM    + P+  T+++
Sbjct: 139 IQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKICPDVATFNI 198

Query: 70  LVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAED 129
           L+  +      E+++ LM K+     E+   +     +  ++   C++G       + + 
Sbjct: 199 LINVLCAEGSFEKSSYLMQKM-----EKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDH 253

Query: 130 MPQGKSVNEEFACGHM-IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
           M + K V+ +    +M I  LCRS R      ++  MRKR + P+ V+YN++++G    G
Sbjct: 254 M-KSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEG 312

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
             + A QLL E + FG  P+  T+  L++G   E + ++A K+   M +K          
Sbjct: 313 KVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYG 372

Query: 249 IYLRALC---------------------------------LIKNP--TELLNVLVFMLQT 273
           + L  LC                                 L KN    E + +L  M + 
Sbjct: 373 VLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKD 432

Query: 274 QCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQE 333
              PD++T + +INGFCK+GR + A +++  +      +P+ + ++T+I+    +G ++E
Sbjct: 433 GIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGL-SPNGIIYSTLIYNCCRMGCLKE 491

Query: 334 ALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVI 393
           A+  +Y+ M   G++    T+N ++  L +  +V EA+E   CM   G++ ++ ++  +I
Sbjct: 492 AIR-IYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLI 550

Query: 394 DGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVT 453
           +G   S +  +A   +D++    +    + Y +++KGLC+ G + EA  FL  L      
Sbjct: 551 NGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAA 610

Query: 454 PNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            + V YN ++   CK     +A  +  EM +  + PD+ T+  L
Sbjct: 611 VDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSL 654



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 124/496 (25%), Positives = 215/496 (43%), Gaps = 8/496 (1%)

Query: 3    QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
             LC   +V EA +    M S G +PN VS+  LI+GY  +GE   A+ VFDEM   G  P
Sbjct: 517  SLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHP 576

Query: 63   NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
               TY  L++G+ +   +  A   +  L          +V+   +  L+ ++C+ G + +
Sbjct: 577  TFFTYGSLLKGLCKGGHLREAEKFLKSL-----HAVPAAVDTVMYNTLLTAMCKSGNLAK 631

Query: 123  VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRG-LTPSLVSYNSIV 181
               +  +M Q   + + +    +I  LCR G+   A         RG + P+ V Y   V
Sbjct: 632  AVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKEAEARGNVLPNKVMYTCFV 691

Query: 182  HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
             G+ K G         E+    G+ P   T   +++G      +EK   +L  M ++   
Sbjct: 692  DGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGG 751

Query: 242  DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
                  NI L      K+ +    +   ++     PD +T ++++ G C+   +E  LK+
Sbjct: 752  PNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSLVLGICESNMLEIGLKI 811

Query: 302  LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
            L   +  +    D  TF  +I      G I  A +L+ +VM   G S    T +A++  L
Sbjct: 812  LKAFIC-RGVEVDRYTFNMLISKCCANGEINWAFDLV-KVMTSLGISLDKDTCDAMVSVL 869

Query: 362  FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
             R  R +E++ V + M   G+  +S  Y  +I+GLC    +  A    ++++       N
Sbjct: 870  NRNHRFQESRMVLHEMSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPN 929

Query: 422  YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
               +AM++ L + GK  EA   L  ++   + P I  +  ++   CK     EA ++   
Sbjct: 930  VAESAMVRALAKCGKADEATLLLRFMLKMKLVPTIASFTTLMHLCCKNGNVIEALELRVV 989

Query: 482  MRKNGLNPDAVTWRIL 497
            M   GL  D V++ +L
Sbjct: 990  MSNCGLKLDLVSYNVL 1005



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 115/444 (25%), Positives = 206/444 (46%), Gaps = 49/444 (11%)

Query: 103 NNAAFANLVDSLCREGYVN---EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGAS 159
           N + +  L+    REG +    E+FR+        SV   + C  ++ S+ +SG +    
Sbjct: 122 NPSVYDILIRVYLREGMIQDSLEIFRLMGLYGFNPSV---YTCNAILGSVVKSGEDVSVW 178

Query: 160 RVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGL 219
             +  M KR + P + ++N +++ LC  G   ++  L+++  + GY P+  TY  ++   
Sbjct: 179 SFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWY 238

Query: 220 CGESDLEKARKVLQFMLSKK-DVDRTRIC--NIYLRALCLIKNPTELLNVLVFMLQTQCQ 276
           C +   + A ++L  M SK  D D   +C  N+ +  LC      +   +L  M +    
Sbjct: 239 CKKGRFKAAIELLDHMKSKGVDAD---VCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIH 295

Query: 277 PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALN 336
           P+ +T NT+INGF   G++  A ++LN+M++    +P+ VTF  +I G ++ G  +EAL 
Sbjct: 296 PNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGL-SPNHVTFNALIDGHISEGNFKEALK 354

Query: 337 LLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 396
           + Y +M  +G +P  V+Y  +L GL +    + A+  +  M   GV     TY  +IDGL
Sbjct: 355 MFY-MMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGL 413

Query: 397 CESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGK-------------------- 436
           C++  LDEA    +++       D   Y+A+I G C+ G+                    
Sbjct: 414 CKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNG 473

Query: 437 ---------------IHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
                          + EA+     ++  G T +   +NV++   CK     EA + +R 
Sbjct: 474 IIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRC 533

Query: 482 MRKNGLNPDAVTWRILDKLHGNRG 505
           M  +G+ P+ V++  L   +GN G
Sbjct: 534 MTSDGILPNTVSFDCLINGYGNSG 557



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 128/577 (22%), Positives = 229/577 (39%), Gaps = 78/577 (13%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    + EA  L  +M   G  P++V+Y+ LI+G+C+ G    A ++   +   G+
Sbjct: 410 IDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGL 469

Query: 61  LPNSLTYSVLVRGVLR-------------------TRDVERANVLMFKL----------- 90
            PN + YS L+    R                   TRD    NVL+  L           
Sbjct: 470 SPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEE 529

Query: 91  WERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC 150
           + R    + +  N  +F  L++     G   + F + ++M +       F  G ++  LC
Sbjct: 530 FMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLC 589

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
           + G    A + +  +         V YN+++  +CK G   +A  L  E +Q   LP  +
Sbjct: 590 KGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSY 649

Query: 211 TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIK---NPTELLNVL 267
           TY  L+ GLC      K + V+  + +K+   R  +    +   C +       +    +
Sbjct: 650 TYTSLISGLC-----RKGKTVIAILFAKEAEARGNVLPNKVMYTCFVDGMFKAGQWKAGI 704

Query: 268 VFMLQTQC---QPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 324
            F  Q       PD++T N +I+G+ +MG+IE+   +L +M   +   P+  T+  ++ G
Sbjct: 705 YFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEM-GNQNGGPNLTTYNILLHG 763

Query: 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL---------------FRLRRVEE 369
                 +  +  LLY+ +   G  P  +T ++++ G+               F  R VE 
Sbjct: 764 YSKRKDVSTSF-LLYRSIILNGILPDKLTCHSLVLGICESNMLEIGLKILKAFICRGVEV 822

Query: 370 AKEVFN--------------------CMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFW 409
            +  FN                     M  +G+  D  T   ++  L  +++  E++   
Sbjct: 823 DRYTFNMLISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQESRMVL 882

Query: 410 DDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKL 469
            ++       ++  Y  +I GLCR G I  A     E++   + P  V  + ++    K 
Sbjct: 883 HEMSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKC 942

Query: 470 SMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
               EA  +LR M K  L P   ++  L  L    GN
Sbjct: 943 GKADEATLLLRFMLKMKLVPTIASFTTLMHLCCKNGN 979



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 114/464 (24%), Positives = 193/464 (41%), Gaps = 43/464 (9%)

Query: 4    LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            LC    + EA K    + +     + V Y TL+   C++G +  A  +F EM    +LP+
Sbjct: 588  LCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPD 647

Query: 64   SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            S TY+ L+ G+ R    +   V+     +  +   ++  N   +   VD + + G     
Sbjct: 648  SYTYTSLISGLCR----KGKTVIAILFAKEAEARGNVLPNKVMYTCFVDGMFKAGQWKAG 703

Query: 124  FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
                E M       +      MID   R G+    + ++  M  +   P+L +YN ++HG
Sbjct: 704  IYFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHG 763

Query: 184  LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQ-FMLSKKDVD 242
              K      ++ L    I  G LP + T   LV G+C  + LE   K+L+ F+    +VD
Sbjct: 764  YSKRKDVSTSFLLYRSIILNGILPDKLTCHSLVLGICESNMLEIGLKILKAFICRGVEVD 823

Query: 243  RTRICNIYLRALC----------LIKNPTEL---------------LN----------VL 267
            R    N+ +   C          L+K  T L               LN          VL
Sbjct: 824  RYTF-NMLISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQESRMVL 882

Query: 268  VFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLN 327
              M +    P+      +ING C++G I+ A  V  +M+A K C P+ V  + ++  L  
Sbjct: 883  HEMSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPN-VAESAMVRALAK 941

Query: 328  VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADST 387
             G+  EA  LL + M +    P I ++  ++    +   V EA E+   M   G+  D  
Sbjct: 942  CGKADEA-TLLLRFMLKMKLVPTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLV 1000

Query: 388  TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 431
            +Y ++I GLC    +  A   ++++     + +   Y A+I+GL
Sbjct: 1001 SYNVLITGLCAKGDMALAFELYEEMKGDGFLANATTYKALIRGL 1044



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 91/348 (26%), Positives = 163/348 (46%), Gaps = 15/348 (4%)

Query: 6    GLSRVGEAHK---LFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
            G SR+G+  K   L  +M ++   PN+ +Y  L+HGY +  ++  ++ ++  +   G+LP
Sbjct: 728  GYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILP 787

Query: 63   NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
            + LT   LV G+  +  +E    ++     R  E     V+   F  L+   C  G +N 
Sbjct: 788  DKLTCHSLVLGICESNMLEIGLKILKAFICRGVE-----VDRYTFNMLISKCCANGEINW 842

Query: 123  VFRIAEDMPQ-GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
             F + + M   G S++++  C  M+  L R+ R   +  V++ M K+G++P    Y  ++
Sbjct: 843  AFDLVKVMTSLGISLDKD-TCDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLI 901

Query: 182  HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGL--CGESDLEKARKVLQFMLSKK 239
            +GLC+ G    A+ + EE I     P       +V  L  CG++D  +A  +L+FML  K
Sbjct: 902  NGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGKAD--EATLLLRFMLKMK 959

Query: 240  DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
             V         +   C   N  E L + V M     + D+++ N +I G C  G +  A 
Sbjct: 960  LVPTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMALAF 1019

Query: 300  KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGY 347
            ++  +M    F A +A T+  +I GLL         +++ + +  RG+
Sbjct: 1020 ELYEEMKGDGFLA-NATTYKALIRGLLARETAFSGADIILKDLLARGF 1066



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/231 (30%), Positives = 99/231 (42%), Gaps = 37/231 (16%)

Query: 276 QPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEAL 335
            P V T N ++    K G        L +M+  K C PD  TF  +I  L   G  +++ 
Sbjct: 155 NPSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKIC-PDVATFNILINVLCAEGSFEKS- 212

Query: 336 NLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG 395
           + L Q M + GY+P IVTYN VL    +  R + A E+ + M   GV AD  TY ++I  
Sbjct: 213 SYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLI-- 270

Query: 396 LCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN 455
                                  HD          LCRS +I +    L ++    + PN
Sbjct: 271 -----------------------HD----------LCRSNRIAKGYLLLRDMRKRMIHPN 297

Query: 456 IVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
            V YN +I+G         A Q+L EM   GL+P+ VT+  L   H + GN
Sbjct: 298 EVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGN 348



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 52/94 (55%), Gaps = 1/94 (1%)

Query: 1    MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
            M   C    V EA +L   M + G   ++VSY  LI G C  G+M +A+++++EM+  G 
Sbjct: 971  MHLCCKNGNVIEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMALAFELYEEMKGDGF 1030

Query: 61   LPNSLTYSVLVRGVL-RTRDVERANVLMFKLWER 93
            L N+ TY  L+RG+L R      A++++  L  R
Sbjct: 1031 LANATTYKALIRGLLARETAFSGADIILKDLLAR 1064


>gi|356529971|ref|XP_003533559.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Glycine max]
          Length = 693

 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 131/495 (26%), Positives = 226/495 (45%), Gaps = 57/495 (11%)

Query: 7   LSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLT 66
           + RV EA ++  +M ++G  P+  +   ++      G ++ A  +FDEM   GV PN ++
Sbjct: 145 IGRVKEAIEMVIEMHNQGLAPSTKTLNWVVKIVTEMGLVEYAENLFDEMCARGVQPNCVS 204

Query: 67  YSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRI 126
           Y V+V G  +       NVL    W     E    V+NA  + +V   C +G+V      
Sbjct: 205 YRVMVVGYCKL-----GNVLESDRWLGGMIERGFVVDNATLSLIVREFCEKGFV------ 253

Query: 127 AEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRK---RGLTPSLVSYNSIVHG 183
                                           +R ++  R+    GL P+L+++  ++ G
Sbjct: 254 --------------------------------TRALWYFRRFCEMGLRPNLINFTCMIEG 281

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKA-RKVLQFMLSKKDVD 242
           LCK G   +A+++LEE +  G+ P+ +T+  L++GLC +   EKA R  L+ + S+    
Sbjct: 282 LCKRGSVKQAFEMLEEMVGRGWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSENHKP 341

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
                   +   C  +       +L  M +    P+  T  T+I+G CK G  E A +++
Sbjct: 342 NVLTYTAMISGYCRDEKMNRAEMLLSRMKEQGLAPNTNTYTTLIDGHCKAGNFERAYELM 401

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGI----VTYNAVL 358
           N M    F +P+  T+  I+ GL   GR+QEA  +L     + G+  G+    VTY  ++
Sbjct: 402 NVMNEEGF-SPNVCTYNAIVDGLCKKGRVQEAYKVL-----KSGFRNGLDADKVTYTILI 455

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
               +   +++A  +FN M+  G+  D  +Y  +I   C   ++ E++ F+++ V    +
Sbjct: 456 SEHCKQAEIKQALVLFNKMVKSGIQPDIHSYTTLIAVFCREKRMKESEMFFEEAVRFGLV 515

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI 478
             N  Y +MI G CR G +  A+ F + + D G   + + Y  +I G CK S   EA  +
Sbjct: 516 PTNKTYTSMICGYCREGNLRLALKFFHRMSDHGCASDSITYGALISGLCKQSKLDEARCL 575

Query: 479 LREMRKNGLNPDAVT 493
              M + GL P  VT
Sbjct: 576 YDAMIEKGLTPCEVT 590



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 111/462 (24%), Positives = 214/462 (46%), Gaps = 31/462 (6%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C L  V E+ +    M  RG V +  + + ++  +C  G +  A   F      G+ PN 
Sbjct: 213 CKLGNVLESDRWLGGMIERGFVVDNATLSLIVREFCEKGFVTRALWYFRRFCEMGLRPNL 272

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           + ++ ++ G+ +   V++A    F++ E M        N      L+D LC++G+  + F
Sbjct: 273 INFTCMIEGLCKRGSVKQA----FEMLEEMV-GRGWKPNVYTHTALIDGLCKKGWTEKAF 327

Query: 125 RIAEDMPQGKSVNEE-FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           R+   + + ++          MI   CR  + + A  ++  M+++GL P+  +Y +++ G
Sbjct: 328 RLFLKLVRSENHKPNVLTYTAMISGYCRDEKMNRAEMLLSRMKEQGLAPNTNTYTTLIDG 387

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK-DVD 242
            CK G   RAY+L+    + G+ P+  TY  +V+GLC +  +++A KVL+       D D
Sbjct: 388 HCKAGNFERAYELMNVMNEEGFSPNVCTYNAIVDGLCKKGRVQEAYKVLKSGFRNGLDAD 447

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
           +     I +   C      + L +   M+++  QPD+ +  T+I  FC+  R++E+    
Sbjct: 448 KVTY-TILISEHCKQAEIKQALVLFNKMVKSGIQPDIHSYTTLIAVFCREKRMKESEMFF 506

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
            + V      P   T+T++I G    G ++ AL   ++ M   G +   +TY A++ GL 
Sbjct: 507 EEAVRFGL-VPTNKTYTSMICGYCREGNLRLALKFFHR-MSDHGCASDSITYGALISGLC 564

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIV------IDGLCESNQLDE--AKRFWDDIVW 414
           +  +++EA+ +++ M+  G+     T   +      ID  C +  + E   K+ W   V 
Sbjct: 565 KQSKLDEARCLYDAMIEKGLTPCEVTRVTLAYEYCKIDDGCSAMVVLERLEKKLWVRTV- 623

Query: 415 PSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNI 456
                       +++ LC   K+  A  F ++L+D    PN+
Sbjct: 624 ----------NTLVRKLCSERKVGMAALFFHKLLDKD--PNV 653



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 94/370 (25%), Positives = 166/370 (44%), Gaps = 41/370 (11%)

Query: 137 NEEFACGH-----MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCM 191
           N+ F   H     M+ S    GR   A  +V  M  +GL PS  + N +V  + + G   
Sbjct: 125 NKNFEKAHEVMQCMVKSFAEIGRVKEAIEMVIEMHNQGLAPSTKTLNWVVKIVTEMGLVE 184

Query: 192 RAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYL 251
            A  L +E    G  P+  +Y+V+V G C   ++ ++ + L  M+ +  V      ++ +
Sbjct: 185 YAENLFDEMCARGVQPNCVSYRVMVVGYCKLGNVLESDRWLGGMIERGFVVDNATLSLIV 244

Query: 252 RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC 311
           R  C     T  L       +   +P++I    +I G CK G +++A ++L +MV G+  
Sbjct: 245 REFCEKGFVTRALWYFRRFCEMGLRPNLINFTCMIEGLCKRGSVKQAFEMLEEMV-GRGW 303

Query: 312 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK 371
            P+  T T +I GL   G  ++A  L  +++    + P ++TY A++ G  R  ++  A+
Sbjct: 304 KPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSENHKPNVLTYTAMISGYCRDEKMNRAE 363

Query: 372 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 431
            + + M   G+  ++ TY  +IDG                                    
Sbjct: 364 MLLSRMKEQGLAPNTNTYTTLIDGH----------------------------------- 388

Query: 432 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 491
           C++G    A   +  + + G +PN+  YN ++DG CK    +EAY++L+   +NGL+ D 
Sbjct: 389 CKAGNFERAYELMNVMNEEGFSPNVCTYNAIVDGLCKKGRVQEAYKVLKSGFRNGLDADK 448

Query: 492 VTWRILDKLH 501
           VT+ IL   H
Sbjct: 449 VTYTILISEH 458



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 103/404 (25%), Positives = 175/404 (43%), Gaps = 46/404 (11%)

Query: 1   MDQLCGLSRVGEAHKLFFDM-KSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCG 59
           +D LC      +A +LF  + +S  H PNV++YT +I GYCR  +M+ A  +   M+  G
Sbjct: 314 IDGLCKKGWTEKAFRLFLKLVRSENHKPNVLTYTAMISGYCRDEKMNRAEMLLSRMKEQG 373

Query: 60  VLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGY 119
           + PN+ TY+ L+ G  +  + ERA  LM      +  EE  S N   +  +VD LC++G 
Sbjct: 374 LAPNTNTYTTLIDGHCKAGNFERAYELM-----NVMNEEGFSPNVCTYNAIVDGLCKKGR 428

Query: 120 VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           V E +++ +   +     ++     +I   C+      A  +   M K G+ P + SY +
Sbjct: 429 VQEAYKVLKSGFRNGLDADKVTYTILISEHCKQAEIKQALVLFNKMVKSGIQPDIHSYTT 488

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++   C+      +    EE ++FG +P+  TY  ++ G C E +L   R  L+F     
Sbjct: 489 LIAVFCREKRMKESEMFFEEAVRFGLVPTNKTYTSMICGYCREGNL---RLALKFFHRMS 545

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
           D                                  C  D IT   +I+G CK  +++EA 
Sbjct: 546 D--------------------------------HGCASDSITYGALISGLCKQSKLDEA- 572

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           + L D +  K   P  VT  T+ +    +     A+ +L ++  +      + T N ++R
Sbjct: 573 RCLYDAMIEKGLTPCEVTRVTLAYEYCKIDDGCSAMVVLERLEKKL----WVRTVNTLVR 628

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLD 403
            L   R+V  A   F+ +L      +  T A  +    ESN+ D
Sbjct: 629 KLCSERKVGMAALFFHKLLDKDPNVNRVTIAAFMTACYESNKYD 672



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 80/333 (24%), Positives = 139/333 (41%), Gaps = 25/333 (7%)

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFG-YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
           +IV  L    G M A       I    +      Y      L    + EKA +V+Q M+ 
Sbjct: 81  TIVASLASDAGSMVALSFFNWAIASSKFRHFTRLYIACAASLISNKNFEKAHEVMQCMV- 139

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
                         ++   I    E + +++ M      P   TLN V+    +MG +E 
Sbjct: 140 --------------KSFAEIGRVKEAIEMVIEMHNQGLAPSTKTLNWVVKIVTEMGLVEY 185

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           A  + ++M A +   P+ V++  ++ G   +G + E+   L   M +RG+     T + +
Sbjct: 186 AENLFDEMCA-RGVQPNCVSYRVMVVGYCKLGNVLESDRWL-GGMIERGFVVDNATLSLI 243

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV---W 414
           +R       V  A   F     +G+  +   +  +I+GLC+   + +A    +++V   W
Sbjct: 244 VREFCEKGFVTRALWYFRRFCEMGLRPNLINFTCMIEGLCKRGSVKQAFEMLEEMVGRGW 303

Query: 415 PSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS-GVTPNIVCYNVVIDGACKLSMKR 473
             N+   Y + A+I GLC+ G   +A     +LV S    PN++ Y  +I G C+     
Sbjct: 304 KPNV---YTHTALIDGLCKKGWTEKAFRLFLKLVRSENHKPNVLTYTAMISGYCRDEKMN 360

Query: 474 EAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
            A  +L  M++ GL P+  T+  L   H   GN
Sbjct: 361 RAEMLLSRMKEQGLAPNTNTYTTLIDGHCKAGN 393


>gi|357443403|ref|XP_003591979.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355481027|gb|AES62230.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 873

 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 129/519 (24%), Positives = 236/519 (45%), Gaps = 43/519 (8%)

Query: 13  AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGE---MDVAYKVFDEMRHCGVLPNSLTYSV 69
            H++F  MK     PN+++  TL++   R+     +  + +VF +    GV PN  T+++
Sbjct: 157 GHQIFNKMKRLRFRPNLLTCNTLLNALVRSNSSHSLVFSREVFQDAVKLGVQPNVNTFNI 216

Query: 70  LVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAED 129
           L+ G     + E A     +L  +M E      +N  +  ++ +LC+   + +V  +   
Sbjct: 217 LIHGYCSDNNTEEA----LRLINQMGEY-GCCPDNVTYNTVLTALCKRSQLTQVRDLLLQ 271

Query: 130 MPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG 189
           M              ++   C+      A+ V+ +M  +G+ P + +YN++V GLC  G 
Sbjct: 272 MKNSGLFPNRNTYNILVHGYCKLKWLKEAAEVIELMTGKGMLPDVWTYNTMVRGLCDEGK 331

Query: 190 CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNI 249
              A +L ++   F  +P   TY  L++G       + A K+++ M ++   +     NI
Sbjct: 332 IDEAVRLRDKMESFKLVPDVVTYNTLIDGCFEHRGSDAAFKLVEEMKARGVKENGVTHNI 391

Query: 250 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM---- 305
            ++  C      E  NV+V M+++   PD  T NT+ING+CK G++ EA K++++M    
Sbjct: 392 MIKWFCTEGKIDEASNVMVKMVESGFSPDCFTYNTMINGYCKAGKMAEAYKMMDEMGRKG 451

Query: 306 ----------VAGKFCAP--------------------DAVTFTTIIFGLLNVGRIQEAL 335
                     +    C                      D VT+ T+I G     +   AL
Sbjct: 452 LKLDTFTLNTLLHTMCLEKQLDDAYTLTMKARKRGYILDEVTYGTLIMGYFKDEQADRAL 511

Query: 336 NLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG 395
            L ++ M + G    I+TYN ++RGL    + ++A +  N +L  G+V D +T  I+I G
Sbjct: 512 KL-WEEMKETGIVATIITYNTIIRGLCLSGKTDQAVDKLNELLEKGLVPDESTSNIIIHG 570

Query: 396 LCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN 455
            C    +++A +F + +V  S   D +    +++GLCR G + + +      +  G   +
Sbjct: 571 YCWEGAVEKAFQFHNKMVEHSLKPDIFTCNILLRGLCREGMLEKGLTLFNTWISKGKPMD 630

Query: 456 IVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
            V YN++I   CK     +A+ ++ EM    L PD  T+
Sbjct: 631 TVTYNIIISSFCKERRLEDAFDLMTEMEGKNLEPDRYTY 669



 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 123/475 (25%), Positives = 219/475 (46%), Gaps = 18/475 (3%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C L  + EA ++   M  +G +P+V +Y T++ G C  G++D A ++ D+M    ++P+ 
Sbjct: 292 CKLKWLKEAAEVIELMTGKGMLPDVWTYNTMVRGLCDEGKIDEAVRLRDKMESFKLVPDV 351

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           +TY+ L+ G    R  + A    FKL E MK    +  N      ++   C EG ++E  
Sbjct: 352 VTYNTLIDGCFEHRGSDAA----FKLVEEMKAR-GVKENGVTHNIMIKWFCTEGKIDEAS 406

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
            +   M +     + F    MI+  C++G+   A +++  M ++GL     + N+++H +
Sbjct: 407 NVMVKMVESGFSPDCFTYNTMINGYCKAGKMAEAYKMMDEMGRKGLKLDTFTLNTLLHTM 466

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
           C       AY L  +  + GY+  E TY  L+ G   +   ++A K+ + M     V   
Sbjct: 467 CLEKQLDDAYTLTMKARKRGYILDEVTYGTLIMGYFKDEQADRALKLWEEMKETGIVATI 526

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
              N  +R LCL     + ++ L  +L+    PD  T N +I+G+C  G +E+A +  N 
Sbjct: 527 ITYNTIIRGLCLSGKTDQAVDKLNELLEKGLVPDESTSNIIIHGYCWEGAVEKAFQFHNK 586

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
           MV      PD  T   ++ GL   G +++ L L +     +G     VTYN ++    + 
Sbjct: 587 MVEHSL-KPDIFTCNILLRGLCREGMLEKGLTL-FNTWISKGKPMDTVTYNIIISSFCKE 644

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFW-----------DDIV 413
           RR+E+A ++   M G  +  D  TY  ++ GL ++ + +EA++                 
Sbjct: 645 RRLEDAFDLMTEMEGKNLEPDRYTYNAIVTGLTKAGRTEEAEKLALKFAEKGQQVKTQDT 704

Query: 414 WPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACK 468
            P     + +Y+  I  LC  GK  +A+    +    GV+ N   Y  ++DG  K
Sbjct: 705 SPELGTSDMMYSEQISSLCTQGKYKDAMKLFQQAEQKGVSLNKYTYIKLMDGLLK 759



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 94/373 (25%), Positives = 168/373 (45%), Gaps = 16/373 (4%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C   ++ EA  +   M   G  P+  +Y T+I+GYC+ G+M  AYK+ DEM   G+  +
Sbjct: 396 FCTEGKIDEASNVMVKMVESGFSPDCFTYNTMINGYCKAGKMAEAYKMMDEMGRKGLKLD 455

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           + T + L+  +   + ++ A  L  K  +R        ++   +  L+    ++   +  
Sbjct: 456 TFTLNTLLHTMCLEKQLDDAYTLTMKARKR-----GYILDEVTYGTLIMGYFKDEQADRA 510

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            ++ E+M +   V        +I  LC SG+   A   +  + ++GL P   + N I+HG
Sbjct: 511 LKLWEEMKETGIVATIITYNTIIRGLCLSGKTDQAVDKLNELLEKGLVPDESTSNIIIHG 570

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            C  G   +A+Q   + ++    P   T  +L+ GLC E  LEK   +    +SK     
Sbjct: 571 YCWEGAVEKAFQFHNKMVEHSLKPDIFTCNILLRGLCREGMLEKGLTLFNTWISKGKPMD 630

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL- 302
           T   NI + + C  +   +  +++  M     +PD  T N ++ G  K GR EEA K+  
Sbjct: 631 TVTYNIIISSFCKERRLEDAFDLMTEMEGKNLEPDRYTYNAIVTGLTKAGRTEEAEKLAL 690

Query: 303 -----NDMVAGKFCAPDAVT----FTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVT 353
                   V  +  +P+  T    ++  I  L   G+ ++A+  L+Q   Q+G S    T
Sbjct: 691 KFAEKGQQVKTQDTSPELGTSDMMYSEQISSLCTQGKYKDAMK-LFQQAEQKGVSLNKYT 749

Query: 354 YNAVLRGLFRLRR 366
           Y  ++ GL + R+
Sbjct: 750 YIKLMDGLLKRRK 762



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 90/290 (31%), Positives = 140/290 (48%), Gaps = 42/290 (14%)

Query: 247 CNIYLRALCLIKNPTELL---NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
           CN  L AL    +   L+    V    ++   QP+V T N +I+G+C     EEAL+++N
Sbjct: 176 CNTLLNALVRSNSSHSLVFSREVFQDAVKLGVQPNVNTFNILIHGYCSDNNTEEALRLIN 235

Query: 304 DMVAGKF-CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
            M  G++ C PD VT+ T++  L    ++ +  +LL Q M   G  P   TYN ++ G  
Sbjct: 236 QM--GEYGCCPDNVTYNTVLTALCKRSQLTQVRDLLLQ-MKNSGLFPNRNTYNILVHGYC 292

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD---------DIV 413
           +L+ ++EA EV   M G G++ D  TY  ++ GLC+  ++DEA R  D         D+V
Sbjct: 293 KLKWLKEAAEVIELMTGKGMLPDVWTYNTMVRGLCDEGKIDEAVRLRDKMESFKLVPDVV 352

Query: 414 WPSNIHDN--------------------------YVYAAMIKGLCRSGKIHEAVHFLYEL 447
             + + D                             +  MIK  C  GKI EA + + ++
Sbjct: 353 TYNTLIDGCFEHRGSDAAFKLVEEMKARGVKENGVTHNIMIKWFCTEGKIDEASNVMVKM 412

Query: 448 VDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           V+SG +P+   YN +I+G CK     EAY+++ EM + GL  D  T   L
Sbjct: 413 VESGFSPDCFTYNTMINGYCKAGKMAEAYKMMDEMGRKGLKLDTFTLNTL 462



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 123/258 (47%), Gaps = 5/258 (1%)

Query: 251 LRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL---KVLNDMVA 307
           L A  + K P     +   M + + +P+++T NT++N   +       +   +V  D V 
Sbjct: 145 LAAYVISKQPHLGHQIFNKMKRLRFRPNLLTCNTLLNALVRSNSSHSLVFSREVFQDAVK 204

Query: 308 GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRV 367
                P+  TF  +I G  +    +EAL L+ Q M + G  P  VTYN VL  L +  ++
Sbjct: 205 LG-VQPNVNTFNILIHGYCSDNNTEEALRLINQ-MGEYGCCPDNVTYNTVLTALCKRSQL 262

Query: 368 EEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAM 427
            + +++   M   G+  +  TY I++ G C+   L EA    + +     + D + Y  M
Sbjct: 263 TQVRDLLLQMKNSGLFPNRNTYNILVHGYCKLKWLKEAAEVIELMTGKGMLPDVWTYNTM 322

Query: 428 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
           ++GLC  GKI EAV    ++    + P++V YN +IDG  +      A++++ EM+  G+
Sbjct: 323 VRGLCDEGKIDEAVRLRDKMESFKLVPDVVTYNTLIDGCFEHRGSDAAFKLVEEMKARGV 382

Query: 488 NPDAVTWRILDKLHGNRG 505
             + VT  I+ K     G
Sbjct: 383 KENGVTHNIMIKWFCTEG 400



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/246 (22%), Positives = 115/246 (46%), Gaps = 18/246 (7%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   +  +A     ++  +G VP+  +   +IHGYC  G ++ A++  ++M    + P+
Sbjct: 536 LCLSGKTDQAVDKLNELLEKGLVPDESTSNIIIHGYCWEGAVEKAFQFHNKMVEHSLKPD 595

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             T ++L+RG+ R   +E+  + +F  W    +  D    N     ++ S C+E  + + 
Sbjct: 596 IFTCNILLRGLCREGMLEKG-LTLFNTWISKGKPMDTVTYNI----IISSFCKERRLEDA 650

Query: 124 FRIAEDMPQGKSVN-EEFACGHMIDSLCRSGRNHGASRVVYVMRKRG-------LTPSL- 174
           F +  +M +GK++  + +    ++  L ++GR   A ++     ++G        +P L 
Sbjct: 651 FDLMTEM-EGKNLEPDRYTYNAIVTGLTKAGRTEEAEKLALKFAEKGQQVKTQDTSPELG 709

Query: 175 ---VSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKV 231
              + Y+  +  LC  G    A +L ++  Q G   +++TY  L++GL           +
Sbjct: 710 TSDMMYSEQISSLCTQGKYKDAMKLFQQAEQKGVSLNKYTYIKLMDGLLKRRKSFTTTSL 769

Query: 232 LQFMLS 237
           L FM+S
Sbjct: 770 LPFMVS 775


>gi|297738285|emb|CBI27486.3| unnamed protein product [Vitis vinifera]
          Length = 509

 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 128/487 (26%), Positives = 225/487 (46%), Gaps = 54/487 (11%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    +  A  LF  MK  G  P++V+Y +LI G+ + G +D    +F++M+    
Sbjct: 63  IDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADC 122

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TY+ L+    +   + +A    F+    MK    L  N   ++  +D+ C+EG +
Sbjct: 123 DPDVITYNALINCFCKFERMPKA----FEFLHEMKAN-GLKPNVVTYSTFIDAFCKEGML 177

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E  +   DM +      EF    +ID+ C++G    A ++V  + + G+  ++V+Y ++
Sbjct: 178 QEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTAL 237

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GLC+ G    A ++    +  G  P++ TY  LV G     ++E A+ +L+ M  K  
Sbjct: 238 LDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEK-- 295

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                         C+                   +PD++   T++ G C   R+EEA K
Sbjct: 296 --------------CI-------------------KPDLLLYGTILWGLCNESRLEEA-K 321

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +L   +       +AV +TT++      G+  EAL LL +++              ++ G
Sbjct: 322 LLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLD-------------LVDG 368

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L +    E AK++F+ ML  G++ D   Y  +IDG  +   L EA    D ++      D
Sbjct: 369 LCKNNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMELD 428

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
            + Y A+I GL  SG++ +A + L E++  GV P+ V Y  +I     L    EA ++  
Sbjct: 429 LHAYTALIWGLSHSGQVQKARNLLDEMIGKGVLPDEVVYMCLIKKYYALGKVDEALELQN 488

Query: 481 EMRKNGL 487
           EM K G+
Sbjct: 489 EMAKRGM 495



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 121/488 (24%), Positives = 221/488 (45%), Gaps = 19/488 (3%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           EA + F  M+     P   S   L+H   + G  D++ K F +M   G+  +  TY++++
Sbjct: 4   EASECFLKMRKFRVFPKPRSCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNIMI 63

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP 131
             + +  D+E A      L+ +MKE    + +   + +L+D   + G ++E   I E M 
Sbjct: 64  DYLCKEGDLEMAR----SLFTQMKEA-GFTPDIVTYNSLIDGHGKLGLLDECICIFEQMK 118

Query: 132 QGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCM 191
                 +      +I+  C+  R   A   ++ M+  GL P++V+Y++ +   CK G   
Sbjct: 119 DADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQ 178

Query: 192 RAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYL 251
            A +   +  +    P+E TY  L++  C   +L +A K+++ +L              L
Sbjct: 179 EAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALL 238

Query: 252 RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC 311
             LC      E   V   ML     P+  T   +++GF K   +E A  +L +M   K  
Sbjct: 239 DGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEM-KEKCI 297

Query: 312 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK 371
            PD + + TI++GL N  R++EA  LL   + + G +   V Y  ++   F+  +  EA 
Sbjct: 298 KPDLLLYGTILWGLCNESRLEEA-KLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEAL 356

Query: 372 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 431
            +   ML +            +DGLC++N  + AK+ +D+++    + D   Y A+I G 
Sbjct: 357 TLLEEMLDL------------VDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGN 404

Query: 432 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 491
            + G + EA++    +++ G+  ++  Y  +I G       ++A  +L EM   G+ PD 
Sbjct: 405 MKHGNLQEALNLRDRMIEIGMELDLHAYTALIWGLSHSGQVQKARNLLDEMIGKGVLPDE 464

Query: 492 VTWRILDK 499
           V +  L K
Sbjct: 465 VVYMCLIK 472



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 108/400 (27%), Positives = 181/400 (45%), Gaps = 34/400 (8%)

Query: 141 ACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEG 200
           +C  ++  L + GR   + +    M   G+  S+ +YN ++  LCK G    A  L  + 
Sbjct: 23  SCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQM 82

Query: 201 IQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC-NIYLRALCLIKN 259
            + G+ P   TY  L++G      L++   + + M    D D   I  N  +   C  + 
Sbjct: 83  KEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQM-KDADCDPDVITYNALINCFCKFER 141

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM--VAGKFCAPDAVT 317
             +    L  M     +P+V+T +T I+ FCK G ++EA+K   DM  VA     P+  T
Sbjct: 142 MPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVA---LTPNEFT 198

Query: 318 FTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCM 377
           +T++I      G + EAL L+ +++ Q G    +VTY A+L GL    R++EA+EVF  M
Sbjct: 199 YTSLIDANCKAGNLAEALKLVEEIL-QAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAM 257

Query: 378 LGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKI 437
           L  GV  +  TY  ++ G  ++ +++ AK    ++       D  +Y  ++ GLC   ++
Sbjct: 258 LNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRL 317

Query: 438 HEAVHFLYELVDSGVTPNIVCYNVV-----------------------IDGACKLSMKRE 474
            EA   + E+ +SG+  N V Y  +                       +DG CK +    
Sbjct: 318 EEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLVDGLCKNNCFEV 377

Query: 475 AYQILREMRKNGLNPDAVTWRIL---DKLHGNRGNDFGLR 511
           A ++  EM   G+ PD + +  L   +  HGN      LR
Sbjct: 378 AKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLR 417



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 133/278 (47%), Gaps = 4/278 (1%)

Query: 225 LEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNT 284
           LE+A +    M   +   + R CN  L  L  +            M     +  V T N 
Sbjct: 2   LEEASECFLKMRKFRVFPKPRSCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNI 61

Query: 285 VINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ 344
           +I+  CK G +E A  +   M    F  PD VT+ ++I G   +G + E +  +++ M  
Sbjct: 62  MIDYLCKEGDLEMARSLFTQMKEAGF-TPDIVTYNSLIDGHGKLGLLDECI-CIFEQMKD 119

Query: 345 RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 404
               P ++TYNA++    +  R+ +A E  + M   G+  +  TY+  ID  C+   L E
Sbjct: 120 ADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQE 179

Query: 405 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
           A +F+ D+   +   + + Y ++I   C++G + EA+  + E++ +G+  N+V Y  ++D
Sbjct: 180 AIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLD 239

Query: 465 GACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
           G C+    +EA ++ R M   G+ P+  T+  L  +HG
Sbjct: 240 GLCEEGRMKEAEEVFRAMLNAGVAPNQETYTAL--VHG 275


>gi|18424537|ref|NP_568948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170898|sp|Q9FIT7.1|PP442_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g61990, mitochondrial; Flags: Precursor
 gi|10176917|dbj|BAB10161.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010163|gb|AED97546.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 974

 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 129/490 (26%), Positives = 231/490 (47%), Gaps = 11/490 (2%)

Query: 10  VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSV 69
           V  A KL   M  +G VP   +Y  LI G C+   ++ A  +  EM   GV  ++ TYS+
Sbjct: 258 VDGALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSL 317

Query: 70  LVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAED 129
           L+ G+L+ R+ + A  L+ ++         +++    +   +  + +EG + +   + + 
Sbjct: 318 LIDGLLKGRNADAAKGLVHEMVSH-----GINIKPYMYDCCICVMSKEGVMEKAKALFDG 372

Query: 130 MPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG 189
           M     + +  A   +I+  CR         ++  M+KR +  S  +Y ++V G+C  G 
Sbjct: 373 MIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGD 432

Query: 190 CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNI 249
              AY +++E I  G  P+   Y  L++     S    A +VL+ M  +         N 
Sbjct: 433 LDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNS 492

Query: 250 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK 309
            +  L   K   E  + LV M++   +P+  T    I+G+ +      A K + +M   +
Sbjct: 493 LIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEM---R 549

Query: 310 FCA--PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRV 367
            C   P+ V  T +I      G++ EA +  Y+ M  +G      TY  ++ GLF+  +V
Sbjct: 550 ECGVLPNKVLCTGLINEYCKKGKVIEACSA-YRSMVDQGILGDAKTYTVLMNGLFKNDKV 608

Query: 368 EEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAM 427
           ++A+E+F  M G G+  D  +Y ++I+G  +   + +A   +D++V      +  +Y  +
Sbjct: 609 DDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNML 668

Query: 428 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
           + G CRSG+I +A   L E+   G+ PN V Y  +IDG CK     EA+++  EM+  GL
Sbjct: 669 LGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGL 728

Query: 488 NPDAVTWRIL 497
            PD+  +  L
Sbjct: 729 VPDSFVYTTL 738



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 131/570 (22%), Positives = 241/570 (42%), Gaps = 80/570 (14%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGY--------------------- 39
           +D LC + R+ +A  L  +M S G   +  +Y+ LI G                      
Sbjct: 284 IDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEMVSHGI 343

Query: 40  --------------CRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANV 85
                          + G M+ A  +FD M   G++P +  Y+ L+ G  R ++V +   
Sbjct: 344 NIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYE 403

Query: 86  LMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHM 145
           L+ ++ +R     ++ ++   +  +V  +C  G ++  + I ++M              +
Sbjct: 404 LLVEMKKR-----NIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTL 458

Query: 146 IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY 205
           I +  ++ R   A RV+  M+++G+ P +  YNS++ GL K      A   L E ++ G 
Sbjct: 459 IKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGL 518

Query: 206 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 265
            P+  TY   + G    S+   A K ++ M     +    +C   +   C      E  +
Sbjct: 519 KPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACS 578

Query: 266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 325
               M+      D  T   ++NG  K  ++++A ++  +M  GK  APD  ++  +I G 
Sbjct: 579 AYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREM-RGKGIAPDVFSYGVLINGF 637

Query: 326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 385
             +G +Q+A ++ +  M + G +P ++ YN +L G  R   +E+AKE+ + M   G+  +
Sbjct: 638 SKLGNMQKASSI-FDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPN 696

Query: 386 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAV---- 441
           + TY  +IDG C+S  L EA R +D++     + D++VY  ++ G CR   +  A+    
Sbjct: 697 AVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFG 756

Query: 442 ------------------------------HFLYELVDSGV----TPNIVCYNVVIDGAC 467
                                           L  L+D        PN V YN++ID  C
Sbjct: 757 TNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLC 816

Query: 468 KLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           K      A ++  +M+   L P  +T+  L
Sbjct: 817 KEGNLEAAKELFHQMQNANLMPTVITYTSL 846



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 115/497 (23%), Positives = 221/497 (44%), Gaps = 12/497 (2%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C    V + ++L  +MK R  V +  +Y T++ G C +G++D AY +  EM   G  PN 
Sbjct: 393 CREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNV 452

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           + Y+ L++  L+      A     ++ + MK E+ ++ +   + +L+  L +   ++E  
Sbjct: 453 VIYTTLIKTFLQNSRFGDA----MRVLKEMK-EQGIAPDIFCYNSLIIGLSKAKRMDEAR 507

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
               +M +       F  G  I     +     A + V  MR+ G+ P+ V    +++  
Sbjct: 508 SFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEY 567

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
           CK G  + A       +  G L    TY VL+ GL     ++ A ++ + M  K      
Sbjct: 568 CKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDV 627

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
               + +     + N  +  ++   M++    P+VI  N ++ GFC+ G IE+A ++L++
Sbjct: 628 FSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDE 687

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
           M   K   P+AVT+ TII G    G + EA   L+  M  +G  P    Y  ++ G  RL
Sbjct: 688 MSV-KGLHPNAVTYCTIIDGYCKSGDLAEAFR-LFDEMKLKGLVPDSFVYTTLVDGCCRL 745

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA----KRFWDDIVWPSNIHD 420
             VE A  +F      G  + +  +  +I+ + +  + +       R  D         +
Sbjct: 746 NDVERAITIFGTNKK-GCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPN 804

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
           +  Y  MI  LC+ G +  A    +++ ++ + P ++ Y  +++G  K+  + E + +  
Sbjct: 805 DVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFD 864

Query: 481 EMRKNGLNPDAVTWRIL 497
           E    G+ PD + + ++
Sbjct: 865 EAIAAGIEPDHIMYSVI 881



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 110/493 (22%), Positives = 221/493 (44%), Gaps = 19/493 (3%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           +C    +  A+ +  +M + G  PNVV YTTLI  + +      A +V  EM+  G+ P+
Sbjct: 427 MCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPD 486

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
              Y+ L+ G+ + + ++ A   + ++ E       L  N   +   +            
Sbjct: 487 IFCYNSLIIGLSKAKRMDEARSFLVEMVEN-----GLKPNAFTYGAFISGYIEASEFASA 541

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            +  ++M +   +  +  C  +I+  C+ G+   A      M  +G+     +Y  +++G
Sbjct: 542 DKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNG 601

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           L K+     A ++  E    G  P   +Y VL+ G     +++KA  +   M+ +     
Sbjct: 602 LFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPN 661

Query: 244 TRICNIYLRALCL---IKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
             I N+ L   C    I+   ELL+    M      P+ +T  T+I+G+CK G + EA +
Sbjct: 662 VIIYNMLLGGFCRSGEIEKAKELLDE---MSVKGLHPNAVTYCTIIDGYCKSGDLAEAFR 718

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           + ++M   K   PD+  +TT++ G   +  ++ A+ +      ++G +     +NA++  
Sbjct: 719 LFDEMKL-KGLVPDSFVYTTLVDGCCRLNDVERAITIFGT--NKKGCASSTAPFNALINW 775

Query: 361 LFRLRRVEEAKEVFNCMLGIGV----VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416
           +F+  + E   EV N ++          +  TY I+ID LC+   L+ AK  +  +   +
Sbjct: 776 VFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNAN 835

Query: 417 NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAY 476
            +     Y +++ G  + G+  E      E + +G+ P+ + Y+V+I+   K  M  +A 
Sbjct: 836 LMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKAL 895

Query: 477 QILREM-RKNGLN 488
            ++ +M  KN ++
Sbjct: 896 VLVDQMFAKNAVD 908



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 121/482 (25%), Positives = 215/482 (44%), Gaps = 20/482 (4%)

Query: 4   LCGLS---RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           + GLS   R+ EA     +M   G  PN  +Y   I GY    E   A K   EMR CGV
Sbjct: 494 IIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGV 553

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           LPN     VL  G++     ++  V+      R   ++ +  +   +  L++ L +   V
Sbjct: 554 LPNK----VLCTGLINEY-CKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKV 608

Query: 121 NEVFRIAEDMPQGKSVNEE-FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           ++   I  +M +GK +  + F+ G +I+   + G    AS +   M + GLTP+++ YN 
Sbjct: 609 DDAEEIFREM-RGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNM 667

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++ G C+ G   +A +LL+E    G  P+  TY  +++G C   DL +A ++   M  K 
Sbjct: 668 LLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKG 727

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
            V  + +    +   C + N  E    +    +  C       N +IN   K G+ E   
Sbjct: 728 LVPDSFVYTTLVDGCCRL-NDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKT 786

Query: 300 KVLNDMVAG---KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
           +VLN ++ G   +F  P+ VT+  +I  L   G ++ A  L +Q M      P ++TY +
Sbjct: 787 EVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQ-MQNANLMPTVITYTS 845

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416
           +L G  ++ R  E   VF+  +  G+  D   Y+++I+   +     +A    D +   +
Sbjct: 846 LLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKN 905

Query: 417 NIHDNYVYA-----AMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSM 471
            + D    +     A++ G  + G++  A   +  +V     P+      +I+ +C  S 
Sbjct: 906 AVDDGCKLSISTCRALLSGFAKVGEMEVAEKVMENMVRLQYIPDSATVIELINESCISSN 965

Query: 472 KR 473
           +R
Sbjct: 966 QR 967



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 108/415 (26%), Positives = 194/415 (46%), Gaps = 53/415 (12%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M+ L    +V +A ++F +M+ +G  P+V SY  LI+G+ + G M  A  +FDEM   G+
Sbjct: 599 MNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGL 658

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN + Y++L+ G  R+ ++E+A  L+ ++       + L  N   +  ++D  C+ G +
Sbjct: 659 TPNVIIYNMLLGGFCRSGEIEKAKELLDEM-----SVKGLHPNAVTYCTIIDGYCKSGDL 713

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E FR+ ++M     V + F    ++D  CR      A   ++   K+G   S   +N++
Sbjct: 714 AEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAI-TIFGTNKKGCASSTAPFNAL 772

Query: 181 VHGLCKHGGCMRAYQLLEEGI-----QFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM 235
           ++ + K G      ++L   +     +FG  P++ TY ++++ LC E +LE A+++   M
Sbjct: 773 INWVFKFGKTELKTEVLNRLMDGSFDRFGK-PNDVTYNIMIDYLCKEGNLEAAKELFHQM 831

Query: 236 LSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 295
            +                                       P VIT  +++NG+ KMGR 
Sbjct: 832 QN-----------------------------------ANLMPTVITYTSLLNGYDKMGRR 856

Query: 296 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG----I 351
            E   V ++ +A     PD + ++ II   L  G   +AL L+ Q+  +     G    I
Sbjct: 857 AEMFPVFDEAIAAGI-EPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSI 915

Query: 352 VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLC-ESNQLDEA 405
            T  A+L G  ++  +E A++V   M+ +  + DS T   +I+  C  SNQ  EA
Sbjct: 916 STCRALLSGFAKVGEMEVAEKVMENMVRLQYIPDSATVIELINESCISSNQRVEA 970



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 113/481 (23%), Positives = 215/481 (44%), Gaps = 21/481 (4%)

Query: 26  VPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANV 85
           VP +     L+    R   +D+ + V+  M    V+ +  TY +L+    R  +V+    
Sbjct: 183 VPRLSRCKVLLDALLRWNRLDLFWDVYKGMVERNVVFDVKTYHMLIIAHCRAGNVQLGKD 242

Query: 86  LMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHM 145
           ++FK     KE    ++N                V+   ++ E M     V  ++    +
Sbjct: 243 VLFK---TEKEFRTATLN----------------VDGALKLKESMICKGLVPLKYTYDVL 283

Query: 146 IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY 205
           ID LC+  R   A  ++  M   G++    +Y+ ++ GL K      A  L+ E +  G 
Sbjct: 284 IDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEMVSHGI 343

Query: 206 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 265
               + Y   +  +  E  +EKA+ +   M++   + + +     +   C  KN  +   
Sbjct: 344 NIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYE 403

Query: 266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 325
           +LV M +        T  TV+ G C  G ++ A  ++ +M+A   C P+ V +TT+I   
Sbjct: 404 LLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASG-CRPNVVIYTTLIKTF 462

Query: 326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 385
           L   R  +A+ +L + M ++G +P I  YN+++ GL + +R++EA+     M+  G+  +
Sbjct: 463 LQNSRFGDAMRVLKE-MKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPN 521

Query: 386 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY 445
           + TY   I G  E+++   A ++  ++     + +  +   +I   C+ GK+ EA     
Sbjct: 522 AFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYR 581

Query: 446 ELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
            +VD G+  +   Y V+++G  K     +A +I REMR  G+ PD  ++ +L       G
Sbjct: 582 SMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLG 641

Query: 506 N 506
           N
Sbjct: 642 N 642



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 63/277 (22%), Positives = 116/277 (41%), Gaps = 47/277 (16%)

Query: 257 IKNPTELLNVLVFM-LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA 315
           + +P++LL+   ++  Q   +  + + + +    C  G  E+AL V+  M+   +  P A
Sbjct: 74  VDDPSKLLSFFNWVDSQKVTEQKLDSFSFLALDLCNFGSFEKALSVVERMIERNW--PVA 131

Query: 316 VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN 375
             +++I+       R  +            G S   V +  +  G      +EEA  VF+
Sbjct: 132 EVWSSIV-------RCSQEF---------VGKSDDGVLFGILFDGYIAKGYIEEAVFVFS 175

Query: 376 CMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD---DIVWPSNIHDNYVYAAMIKGLC 432
             +G+ +V   +   +++D L   N+LD    FWD    +V  + + D   Y  +I   C
Sbjct: 176 SSMGLELVPRLSRCKVLLDALLRWNRLD---LFWDVYKGMVERNVVFDVKTYHMLIIAHC 232

Query: 433 RSGKIHEAVHFLYE---------------------LVDSGVTPNIVCYNVVIDGACKLSM 471
           R+G +      L++                     ++  G+ P    Y+V+IDG CK+  
Sbjct: 233 RAGNVQLGKDVLFKTEKEFRTATLNVDGALKLKESMICKGLVPLKYTYDVLIDGLCKIKR 292

Query: 472 KREAYQILREMRKNGLNPDAVTWRIL-DKLHGNRGND 507
             +A  +L EM   G++ D  T+ +L D L   R  D
Sbjct: 293 LEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNAD 329


>gi|302767030|ref|XP_002966935.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
 gi|300164926|gb|EFJ31534.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
          Length = 428

 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 114/355 (32%), Positives = 187/355 (52%), Gaps = 4/355 (1%)

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
           +I  LC++ +   A  +++VM   G   S+V+Y +++ GLCK G    A  LL++    G
Sbjct: 16  LIAGLCKARKPRHALELLHVMAANGYDASVVTYTTLIDGLCKSGDLDAAQALLQKMADAG 75

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL 264
             P+  TY  L++GLC       A + ++ ML           N  +  LC+     +  
Sbjct: 76  CAPNVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPDLVTYNSLIHGLCMANRMDDAG 135

Query: 265 NVLV-FMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF 323
            VL   M+++   PDV+T NT I+G CK G++++ L++L +M  G   +PD VTF +II 
Sbjct: 136 LVLQELMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGI-SPDVVTFCSIIS 194

Query: 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 383
           GL    RI +A  + ++ M +RG  P  +TY+ +L  L R  R++  +EV   M+  G  
Sbjct: 195 GLCKANRIDDAFQV-FKGMLERGCVPDSLTYSIMLDNLSRANRLDTVEEVLEHMVKSGHY 253

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
           A S TYA +I  L  +  ++ A   ++  +    + + Y + A I  LCRSGK   A + 
Sbjct: 254 ALSATYAPLIHALIRAGDIESASWAYEQAMEAGCVMEVYTHNAFIGALCRSGKFPLAKNI 313

Query: 444 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG-LNPDAVTWRIL 497
           L  +++SG  PN++ YN VIDG CK     +A+++ R+M  +G   PD + +  L
Sbjct: 314 LLGMIESGSLPNLLSYNFVIDGLCKSGNVDDAWKLSRKMLDSGCCKPDVIFFNTL 368



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 116/428 (27%), Positives = 201/428 (46%), Gaps = 12/428 (2%)

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           ++  Y+ L+ G+ + R    A  L+  +        D SV    +  L+D LC+ G ++ 
Sbjct: 9   DAAIYNTLIAGLCKARKPRHALELLHVM---AANGYDASV--VTYTTLIDGLCKSGDLDA 63

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
              + + M              +ID LC++ R H A + V  M + G  P LV+YNS++H
Sbjct: 64  AQALLQKMADAGCAPNVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPDLVTYNSLIH 123

Query: 183 GLCKHGGCMRAYQLLEE-GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM-LSKKD 240
           GLC       A  +L+E  I+ G +P   TY   + GLC    L+K  ++L+ M      
Sbjct: 124 GLCMANRMDDAGLVLQELMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGIS 183

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
            D    C+I +  LC      +   V   ML+  C PD +T + +++   +  R++   +
Sbjct: 184 PDVVTFCSI-ISGLCKANRIDDAFQVFKGMLERGCVPDSLTYSIMLDNLSRANRLDTVEE 242

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           VL  MV     A  A T+  +I  L+  G I+ A +  Y+   + G    + T+NA +  
Sbjct: 243 VLEHMVKSGHYALSA-TYAPLIHALIRAGDIESA-SWAYEQAMEAGCVMEVYTHNAFIGA 300

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L R  +   AK +   M+  G + +  +Y  VIDGLC+S  +D+A +    ++       
Sbjct: 301 LCRSGKFPLAKNILLGMIESGSLPNLLSYNFVIDGLCKSGNVDDAWKLSRKMLDSGCCKP 360

Query: 421 NYVY-AAMIKGLCRSGKIHEAVHFLYELVDSGV-TPNIVCYNVVIDGACKLSMKREAYQI 478
           + ++   +I G C++G++ +A   L E+    +  P++V YN +IDG  K    ++A  +
Sbjct: 361 DVIFFNTLISGFCKAGRLSQAQQLLKEMKAKNICVPDVVTYNTMIDGQSKFGSLKQAKLL 420

Query: 479 LREMRKNG 486
           L EM+  G
Sbjct: 421 LEEMQAVG 428



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 105/414 (25%), Positives = 194/414 (46%), Gaps = 41/414 (9%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   +   A +L   M + G+  +VV+YTTLI G C++G++D A  +  +M   G  PN
Sbjct: 20  LCKARKPRHALELLHVMAANGYDASVVTYTTLIDGLCKSGDLDAAQALLQKMADAGCAPN 79

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY+ L+ G+ + R    A +   K   R   E DL   N+    L+  LC    +++ 
Sbjct: 80  VVTYTALIDGLCKARRPHDA-IQTVKRMLRSGCEPDLVTYNS----LIHGLCMANRMDDA 134

Query: 124 -FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
              + E M +   + +       I  LC++G+      ++  M + G++P +V++ SI+ 
Sbjct: 135 GLVLQELMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGISPDVVTFCSIIS 194

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK--- 239
           GLCK      A+Q+ +  ++ G +P   TY ++++ L   + L+   +VL+ M+      
Sbjct: 195 GLCKANRIDDAFQVFKGMLERGCVPDSLTYSIMLDNLSRANRLDTVEEVLEHMVKSGHYA 254

Query: 240 ----------------DVDRTRIC----------------NIYLRALCLIKNPTELLNVL 267
                           D++                     N ++ ALC         N+L
Sbjct: 255 LSATYAPLIHALIRAGDIESASWAYEQAMEAGCVMEVYTHNAFIGALCRSGKFPLAKNIL 314

Query: 268 VFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLN 327
           + M+++   P++++ N VI+G CK G +++A K+   M+    C PD + F T+I G   
Sbjct: 315 LGMIESGSLPNLLSYNFVIDGLCKSGNVDDAWKLSRKMLDSGCCKPDVIFFNTLISGFCK 374

Query: 328 VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG 381
            GR+ +A  LL ++  +    P +VTYN ++ G  +   +++AK +   M  +G
Sbjct: 375 AGRLSQAQQLLKEMKAKNICVPDVVTYNTMIDGQSKFGSLKQAKLLLEEMQAVG 428



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 80/154 (51%), Gaps = 1/154 (0%)

Query: 342 MPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ 401
           M  R +      YN ++ GL + R+   A E+ + M   G  A   TY  +IDGLC+S  
Sbjct: 1   MASRHFRLDAAIYNTLIAGLCKARKPRHALELLHVMAANGYDASVVTYTTLIDGLCKSGD 60

Query: 402 LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNV 461
           LD A+     +       +   Y A+I GLC++ + H+A+  +  ++ SG  P++V YN 
Sbjct: 61  LDAAQALLQKMADAGCAPNVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPDLVTYNS 120

Query: 462 VIDGACKLSMKREAYQILRE-MRKNGLNPDAVTW 494
           +I G C  +   +A  +L+E M ++G  PD VT+
Sbjct: 121 LIHGLCMANRMDDAGLVLQELMIESGRIPDVVTY 154



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 41/78 (52%)

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           D  +Y  +I GLC++ K   A+  L+ +  +G   ++V Y  +IDG CK      A  +L
Sbjct: 9   DAAIYNTLIAGLCKARKPRHALELLHVMAANGYDASVVTYTTLIDGLCKSGDLDAAQALL 68

Query: 480 REMRKNGLNPDAVTWRIL 497
           ++M   G  P+ VT+  L
Sbjct: 69  QKMADAGCAPNVVTYTAL 86


>gi|358344944|ref|XP_003636545.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355502480|gb|AES83683.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1280

 Score =  181 bits (459), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 128/471 (27%), Positives = 232/471 (49%), Gaps = 25/471 (5%)

Query: 19  DMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTR 78
            M+S+G  P++ + + LI+ YC  G+M  A+ VF ++   G+  N      L+       
Sbjct: 92  QMESKGVKPDLFTLSILINCYCHLGQMTFAFSVFAKILKMGLCLNGKVNEALLFH----- 146

Query: 79  DVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNE 138
             +    L F L            N+  +  L++ LC+ G      ++   + +GK VN 
Sbjct: 147 --DHVLALGFHL------------NHVTYGILINGLCKMGQTRAALQVLRQI-EGKLVNT 191

Query: 139 EFAC-GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLL 197
                  +ID LC+      A  +   M  + + P++V+++S+++G C  G    A++L 
Sbjct: 192 NVVMYSTIIDGLCKDKLVTDAYGLYSEMIVKRIPPTVVTFSSLIYGFCIVGKFKDAFRLF 251

Query: 198 EEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC-NIYLRALCL 256
            E +     P  +T+ +LV+ LC E  +++A+ V+  M+ K+ V+ T +  N  +   CL
Sbjct: 252 NEMVMKNINPDAYTFNILVDALCKEGKIKEAKNVIAVMM-KEGVEPTVVTYNTLMDGYCL 310

Query: 257 IKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAV 316
           +    +  +VL  + + +  P+  + N +INGFCK+  ++EAL + ++M   +  AP  V
Sbjct: 311 VNEVGKAKHVLSIISRMRVAPNSRSYNIMINGFCKIKMVDEALCLFHEMCC-RGIAPHKV 369

Query: 317 TFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNC 376
           T+ ++I GL   GRI  A  L+ + M        IVTYN+++    + + V++A  +   
Sbjct: 370 TYNSLIDGLCKAGRIPYAWELVDE-MHNNCIPADIVTYNSLIDVFCKNQHVDKAIALVKK 428

Query: 377 MLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGK 436
           +   G+  +  TY I+IDGLC+  QL  A+  + D++      + + Y  MI GLC+ G 
Sbjct: 429 IKEHGIQPNMCTYNILIDGLCKGGQLKNAQDVFQDLLIKGYNVNAWTYNIMINGLCKEGL 488

Query: 437 IHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
             EA   L ++ D+G+ P+ V Y  +I          +A ++LREM   G+
Sbjct: 489 FDEAEVLLSKMEDNGIIPDAVTYETIIQALFHKDENEKAQKLLREMVIKGV 539



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 115/450 (25%), Positives = 205/450 (45%), Gaps = 44/450 (9%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   +V EA      + + G   N V+Y  LI+G C+ G+   A +V  ++    V  N
Sbjct: 133 LCLNGKVNEALLFHDHVLALGFHLNHVTYGILINGLCKMGQTRAALQVLRQIEGKLVNTN 192

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            + YS ++ G+ + + V  A    + L+  M  +  +      F++L+   C  G   + 
Sbjct: 193 VVMYSTIIDGLCKDKLVTDA----YGLYSEMIVKR-IPPTVVTFSSLIYGFCIVGKFKDA 247

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           FR+  +M       + +    ++D+LC+ G+   A  V+ VM K G+ P++V+YN+++ G
Sbjct: 248 FRLFNEMVMKNINPDAYTFNILVDALCKEGKIKEAKNVIAVMMKEGVEPTVVTYNTLMDG 307

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            C      +A  +L    +    P+  +Y +++ G C                  K VD 
Sbjct: 308 YCLVNEVGKAKHVLSIISRMRVAPNSRSYNIMINGFC----------------KIKMVD- 350

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                    ALCL             M      P  +T N++I+G CK GRI  A ++++
Sbjct: 351 --------EALCLFHE----------MCCRGIAPHKVTYNSLIDGLCKAGRIPYAWELVD 392

Query: 304 DMVAGKFCAP-DAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
           +M     C P D VT+ ++I        + +A+ L+ ++  + G  P + TYN ++ GL 
Sbjct: 393 EMHNN--CIPADIVTYNSLIDVFCKNQHVDKAIALVKKI-KEHGIQPNMCTYNILIDGLC 449

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
           +  +++ A++VF  +L  G   ++ TY I+I+GLC+    DEA+     +     I D  
Sbjct: 450 KGGQLKNAQDVFQDLLIKGYNVNAWTYNIMINGLCKEGLFDEAEVLLSKMEDNGIIPDAV 509

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGV 452
            Y  +I+ L    +  +A   L E+V  GV
Sbjct: 510 TYETIIQALFHKDENEKAQKLLREMVIKGV 539



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 95/355 (26%), Positives = 162/355 (45%), Gaps = 24/355 (6%)

Query: 165 MRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQF-GYLPSEHTYKVLVEGLCGES 223
           MR+   TPS+V +N I+  L K          L   ++  G  P   T  +L+   C   
Sbjct: 57  MRQIRQTPSIVEFNKILTYLIKTKNHYPTVLSLSTQMESKGVKPDLFTLSILINCYCHLG 116

Query: 224 DLEKARKVLQFMLS-----KKDVDRTRICNIYLRALCLIKNPTE---LLNVLVFMLQTQC 275
            +  A  V   +L         V+   + + ++ AL    N      L+N L  M QT+ 
Sbjct: 117 QMTFAFSVFAKILKMGLCLNGKVNEALLFHDHVLALGFHLNHVTYGILINGLCKMGQTRA 176

Query: 276 -------------QPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTII 322
                          +V+  +T+I+G CK   + +A  + ++M+  K   P  VTF+++I
Sbjct: 177 ALQVLRQIEGKLVNTNVVMYSTIIDGLCKDKLVTDAYGLYSEMIV-KRIPPTVVTFSSLI 235

Query: 323 FGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGV 382
           +G   VG+ ++A   L+  M  +  +P   T+N ++  L +  +++EAK V   M+  GV
Sbjct: 236 YGFCIVGKFKDAFR-LFNEMVMKNINPDAYTFNILVDALCKEGKIKEAKNVIAVMMKEGV 294

Query: 383 VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVH 442
                TY  ++DG C  N++ +AK     I       ++  Y  MI G C+   + EA+ 
Sbjct: 295 EPTVVTYNTLMDGYCLVNEVGKAKHVLSIISRMRVAPNSRSYNIMINGFCKIKMVDEALC 354

Query: 443 FLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
             +E+   G+ P+ V YN +IDG CK      A++++ EM  N +  D VT+  L
Sbjct: 355 LFHEMCCRGIAPHKVTYNSLIDGLCKAGRIPYAWELVDEMHNNCIPADIVTYNSL 409



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 101/368 (27%), Positives = 181/368 (49%), Gaps = 29/368 (7%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    V +A+ L+ +M  +   P VV++++LI+G+C  G+   A+++F+EM    +
Sbjct: 200 IDGLCKDKLVTDAYGLYSEMIVKRIPPTVVTFSSLIYGFCIVGKFKDAFRLFNEMVMKNI 259

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLC---RE 117
            P++ T+++LV  + +   ++ A  ++  +   MKE  + +V    +  L+D  C     
Sbjct: 260 NPDAYTFNILVDALCKEGKIKEAKNVIAVM---MKEGVEPTV--VTYNTLMDGYCLVNEV 314

Query: 118 GYVNEVFRIAEDM---PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSL 174
           G    V  I   M   P  +S N       MI+  C+      A  + + M  RG+ P  
Sbjct: 315 GKAKHVLSIISRMRVAPNSRSYN------IMINGFCKIKMVDEALCLFHEMCCRGIAPHK 368

Query: 175 VSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSE-HTYKVLVEGLCGESDLEKARKVLQ 233
           V+YNS++ GLCK G    A++L++E +    +P++  TY  L++  C    ++KA  +++
Sbjct: 369 VTYNSLIDGLCKAGRIPYAWELVDE-MHNNCIPADIVTYNSLIDVFCKNQHVDKAIALVK 427

Query: 234 FMLSKKDVDRTRIC--NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK 291
            +  K+   +  +C  NI +  LC         +V   +L      +  T N +ING CK
Sbjct: 428 KI--KEHGIQPNMCTYNILIDGLCKGGQLKNAQDVFQDLLIKGYNVNAWTYNIMINGLCK 485

Query: 292 MGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGI 351
            G  +EA  +L+ M       PDAVT+ TII  L +    ++A  LL +++ +     G+
Sbjct: 486 EGLFDEAEVLLSKMEDNGII-PDAVTYETIIQALFHKDENEKAQKLLREMVIK-----GV 539

Query: 352 VTYNAVLR 359
           V Y   +R
Sbjct: 540 VVYAFEIR 547


>gi|302799124|ref|XP_002981321.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
 gi|300150861|gb|EFJ17509.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
          Length = 457

 Score =  181 bits (459), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 124/481 (25%), Positives = 222/481 (46%), Gaps = 43/481 (8%)

Query: 28  NVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLM 87
             +SY  L+    ++G  D  Y  +++M   G +PN+ TY  L+R + + +  E A  + 
Sbjct: 16  GTLSYNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRSLCQAQRFEEARSVF 75

Query: 88  FKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMID 147
                R    +  S N  +++ L+  LCR   V+E   +  +M  G         G ++ 
Sbjct: 76  -----RGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLS 130

Query: 148 SLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLP 207
            LC+ G+   A  +   M  RG  P  V YN ++ G  K G    AY+L EE ++ G +P
Sbjct: 131 GLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIP 190

Query: 208 SEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVL 267
           +  TY  L+ G   + +  + + +       KD                           
Sbjct: 191 TVFTYNSLLSGFSRKGEFGRVQSLF------KD--------------------------- 217

Query: 268 VFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLN 327
             ML+  C P++ T N +++GFCKMG + EA ++  +M +   C PD V++ T+I G+ +
Sbjct: 218 --MLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLG-CPPDVVSYNTLIRGMCS 274

Query: 328 VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADST 387
            G+  EA  LL + M + G  P IV+YN ++ G  +   ++ A ++F  +   G+  D+ 
Sbjct: 275 KGKPHEAQRLLRE-MIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAF 333

Query: 388 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYEL 447
           +Y+ +ID LC + ++  A   + D++   +  D  V   ++ GLCR  ++ E+      +
Sbjct: 334 SYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCRGERLTESCELFQAM 393

Query: 448 VDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA-VTWRILDKLHGNRGN 506
           V     P I  YN+++   CK     +  +I  E+ + G +PD  ++  IL+ L  +   
Sbjct: 394 VKFECVPLIPEYNLLMYKLCKAKRSDDVCEIFHELTERGFSPDVEISKVILETLRRSDDK 453

Query: 507 D 507
           D
Sbjct: 454 D 454



 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 113/456 (24%), Positives = 201/456 (44%), Gaps = 42/456 (9%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           R    +  + DM + G VPN  +Y  L+   C+    + A  VF  M   G  PN  +YS
Sbjct: 32  RCDHVYGTYNDMLAAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGMAAQGCSPNVFSYS 91

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
           +L+ G+ R + V+ A  L+ ++ +   +      N   + +L+  LC+ G + E   +  
Sbjct: 92  ILIAGLCRGQKVDEAAELLNEMIDGGHQP-----NVVTYGSLLSGLCKMGKLKEAVDL-- 144

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
                                         SR+VY    RG  P  V YN ++ G  K G
Sbjct: 145 -----------------------------FSRMVY----RGCPPDGVVYNVLIDGFSKKG 171

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
               AY+L EE ++ G +P+  TY  L+ G   + +  + + + + ML +  V      N
Sbjct: 172 DMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFN 231

Query: 249 IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 308
             L   C + +  E   + + M    C PDV++ NT+I G C  G+  EA ++L +M+  
Sbjct: 232 NLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMCSKGKPHEAQRLLREMIRS 291

Query: 309 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE 368
               PD V++  +I G    G +  A+ L Y++ P+ G  P   +Y+ ++  L R  +V 
Sbjct: 292 GV-GPDIVSYNILIDGYSKSGALDHAIKLFYEI-PKSGLEPDAFSYSTIIDCLCRAGKVG 349

Query: 369 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI 428
            A  VF  M+  G   D+     ++ GLC   +L E+   +  +V    +     Y  ++
Sbjct: 350 AAFVVFKDMIANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVKFECVPLIPEYNLLM 409

Query: 429 KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
             LC++ +  +     +EL + G +P++    V+++
Sbjct: 410 YKLCKAKRSDDVCEIFHELTERGFSPDVEISKVILE 445



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 100/404 (24%), Positives = 189/404 (46%), Gaps = 7/404 (1%)

Query: 3   QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
            LC   R  EA  +F  M ++G  PNV SY+ LI G CR  ++D A ++ +EM   G  P
Sbjct: 61  SLCQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQP 120

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           N +TY  L+ G+ +   ++ A  L  ++  R         +   +  L+D   ++G + E
Sbjct: 121 NVVTYGSLLSGLCKMGKLKEAVDLFSRMVYR-----GCPPDGVVYNVLIDGFSKKGDMGE 175

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
            +R+ E+M +   +   F    ++    R G       +   M ++G  P++ ++N+++ 
Sbjct: 176 AYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLD 235

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           G CK G  + A++L  E    G  P   +Y  L+ G+C +    +A+++L+ M+      
Sbjct: 236 GFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMCSKGKPHEAQRLLREMIRSGVGP 295

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
                NI +            + +   + ++  +PD  + +T+I+  C+ G++  A  V 
Sbjct: 296 DIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVF 355

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
            DM+A    APDA     ++ GL    R+ E+   L+Q M +    P I  YN ++  L 
Sbjct: 356 KDMIANG-SAPDAAVVIPLVIGLCRGERLTESCE-LFQAMVKFECVPLIPEYNLLMYKLC 413

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
           + +R ++  E+F+ +   G   D     ++++ L  S+  D A+
Sbjct: 414 KAKRSDDVCEIFHELTERGFSPDVEISKVILETLRRSDDKDAAE 457



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 146/298 (48%), Gaps = 2/298 (0%)

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
           G Q  Y     +Y  L+E L      +        ML+   V  T      LR+LC  + 
Sbjct: 8   GSQVHYNHGTLSYNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRSLCQAQR 67

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
             E  +V   M    C P+V + + +I G C+  +++EA ++LN+M+ G    P+ VT+ 
Sbjct: 68  FEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGH-QPNVVTYG 126

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
           +++ GL  +G+++EA++L +  M  RG  P  V YN ++ G  +   + EA  +F  ML 
Sbjct: 127 SLLSGLCKMGKLKEAVDL-FSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLE 185

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
            G +    TY  ++ G     +    +  + D++    + + + +  ++ G C+ G + E
Sbjct: 186 KGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVE 245

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           A     E+   G  P++V YN +I G C      EA ++LREM ++G+ PD V++ IL
Sbjct: 246 AHRLFLEMRSLGCPPDVVSYNTLIRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNIL 303



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 112/228 (49%), Gaps = 5/228 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C +  + EAH+LF +M+S G  P+VVSY TLI G C  G+   A ++  EM   GV
Sbjct: 234 LDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMCSKGKPHEAQRLLREMIRSGV 293

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ ++Y++L+ G  ++  ++ A  L +++ +   E +  S     ++ ++D LCR G V
Sbjct: 294 GPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFS-----YSTIIDCLCRAGKV 348

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
              F + +DM    S  +      ++  LCR  R   +  +   M K    P +  YN +
Sbjct: 349 GAAFVVFKDMIANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVKFECVPLIPEYNLL 408

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKA 228
           ++ LCK        ++  E  + G+ P     KV++E L    D + A
Sbjct: 409 MYKLCKAKRSDDVCEIFHELTERGFSPDVEISKVILETLRRSDDKDAA 456



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 60/172 (34%), Positives = 90/172 (52%), Gaps = 3/172 (1%)

Query: 339 YQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE 398
           Y  M   G  P   TY  +LR L + +R EEA+ VF  M   G   +  +Y+I+I GLC 
Sbjct: 40  YNDMLAAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCR 99

Query: 399 SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVC 458
             ++DEA    ++++   +  +   Y +++ GLC+ GK+ EAV     +V  G  P+ V 
Sbjct: 100 GQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVV 159

Query: 459 YNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG-NRGNDFG 509
           YNV+IDG  K     EAY++  EM + G  P   T+  L  L G +R  +FG
Sbjct: 160 YNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSL--LSGFSRKGEFG 209


>gi|15233142|ref|NP_191058.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75210358|sp|Q9SV46.1|PP282_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g54980, mitochondrial; Flags: Precursor
 gi|4678295|emb|CAB41086.1| putative protein [Arabidopsis thaliana]
 gi|28393168|gb|AAO42016.1| unknown protein [Arabidopsis thaliana]
 gi|332645801|gb|AEE79322.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 851

 Score =  181 bits (459), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 133/533 (24%), Positives = 250/533 (46%), Gaps = 50/533 (9%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           +A +L  +M S G   NVV+ T+LI G+C+  ++  A  +FD+M   G  PNS+T+SVL+
Sbjct: 322 DAIRLKDEMLSDGISMNVVAATSLITGHCKNNDLVSALVLFDKMEKEGPSPNSVTFSVLI 381

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFA--NLVDSLCREGYVNEVFRIAED 129
               +  ++E+A        E  K+ E L +  + F    ++    +     E  ++ ++
Sbjct: 382 EWFRKNGEMEKA-------LEFYKKMEVLGLTPSVFHVHTIIQGWLKGQKHEEALKLFDE 434

Query: 130 MPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG 189
             +    N  F C  ++  LC+ G+   A+ ++  M  RG+ P++VSYN+++ G C+   
Sbjct: 435 SFETGLANV-FVCNTILSWLCKQGKTDEATELLSKMESRGIGPNVVSYNNVMLGHCRQKN 493

Query: 190 CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNI 249
              A  +    ++ G  P+ +TY +L++G     D + A +V+  M S        +   
Sbjct: 494 MDLARIVFSNILEKGLKPNNYTYSILIDGCFRNHDEQNALEVVNHMTSSNIEVNGVVYQT 553

Query: 250 YLRALCLIKNPTELLNVLVFMLQTQ--CQPDVITLNTVINGFCKMGRIEEALKVLNDMVA 307
            +  LC +   ++   +L  M++ +  C    ++ N++I+GF K G ++ A+    +M  
Sbjct: 554 IINGLCKVGQTSKARELLANMIEEKRLCV-SCMSYNSIIDGFFKEGEMDSAVAAYEEM-C 611

Query: 308 GKFCAPDAVTFTTIIFGLLNVGRIQEALNL------------------------------ 337
           G   +P+ +T+T+++ GL    R+ +AL +                              
Sbjct: 612 GNGISPNVITYTSLMNGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIDGFCKRSNME 671

Query: 338 ----LYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVI 393
               L+  + + G +P    YN+++ G   L  +  A +++  ML  G+  D  TY  +I
Sbjct: 672 SASALFSELLEEGLNPSQPIYNSLISGFRNLGNMVAALDLYKKMLKDGLRCDLGTYTTLI 731

Query: 394 DGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVT 453
           DGL +   L  A   + ++     + D  +Y  ++ GL + G+  + V    E+  + VT
Sbjct: 732 DGLLKDGNLILASELYTEMQAVGLVPDEIIYTVIVNGLSKKGQFVKVVKMFEEMKKNNVT 791

Query: 454 PNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           PN++ YN VI G  +     EA+++  EM   G+ PD  T+ IL  + G  GN
Sbjct: 792 PNVLIYNAVIAGHYREGNLDEAFRLHDEMLDKGILPDGATFDIL--VSGQVGN 842



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 106/393 (26%), Positives = 195/393 (49%), Gaps = 8/393 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   +  EA +L   M+SRG  PNVVSY  ++ G+CR   MD+A  VF  +   G+ PN
Sbjct: 453 LCKQGKTDEATELLSKMESRGIGPNVVSYNNVMLGHCRQKNMDLARIVFSNILEKGLKPN 512

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           + TYS+L+ G  R  D + A     ++   M    ++ VN   +  +++ LC+ G  ++ 
Sbjct: 513 NYTYSILIDGCFRNHDEQNA----LEVVNHMT-SSNIEVNGVVYQTIINGLCKVGQTSKA 567

Query: 124 FRIAEDMPQGKSVNEE-FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
             +  +M + K +     +   +ID   + G    A      M   G++P++++Y S+++
Sbjct: 568 RELLANMIEEKRLCVSCMSYNSIIDGFFKEGEMDSAVAAYEEMCGNGISPNVITYTSLMN 627

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           GLCK+    +A ++ +E    G       Y  L++G C  S++E A  +   +L +    
Sbjct: 628 GLCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIDGFCKRSNMESASALFSELLEEGLNP 687

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
              I N  +     + N    L++   ML+   + D+ T  T+I+G  K G +  A ++ 
Sbjct: 688 SQPIYNSLISGFRNLGNMVAALDLYKKMLKDGLRCDLGTYTTLIDGLLKDGNLILASELY 747

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
            +M A     PD + +T I+ GL   G+  + +  +++ M +   +P ++ YNAV+ G +
Sbjct: 748 TEMQAVGLV-PDEIIYTVIVNGLSKKGQFVKVVK-MFEEMKKNNVTPNVLIYNAVIAGHY 805

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG 395
           R   ++EA  + + ML  G++ D  T+ I++ G
Sbjct: 806 REGNLDEAFRLHDEMLDKGILPDGATFDILVSG 838



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 123/522 (23%), Positives = 231/522 (44%), Gaps = 43/522 (8%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           EA +L+  M + G   + V+   L+    R  +   A +V       G  P+SL YS+ V
Sbjct: 216 EAKELYSRMVAIGVDGDNVTTQLLMRASLREEKPAEALEVLSRAIERGAEPDSLLYSLAV 275

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDM- 130
           +   +T D+  AN L+      MKE++    +   + +++ +  ++G +++  R+ ++M 
Sbjct: 276 QACCKTLDLAMANSLL----REMKEKKLCVPSQETYTSVILASVKQGNMDDAIRLKDEML 331

Query: 131 PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGC 190
             G S+N   A   +I   C++     A  +   M K G +P+ V+++ ++    K+G  
Sbjct: 332 SDGISMN-VVAATSLITGHCKNNDLVSALVLFDKMEKEGPSPNSVTFSVLIEWFRKNGEM 390

Query: 191 MRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIY 250
            +A +  ++    G  PS      +++G       E+A K+      +  +    +CN  
Sbjct: 391 EKALEFYKKMEVLGLTPSVFHVHTIIQGWLKGQKHEEALKLFDESF-ETGLANVFVCNTI 449

Query: 251 LRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK-----MGRI---------- 295
           L  LC      E   +L  M      P+V++ N V+ G C+     + RI          
Sbjct: 450 LSWLCKQGKTDEATELLSKMESRGIGPNVVSYNNVMLGHCRQKNMDLARIVFSNILEKGL 509

Query: 296 --------------------EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEAL 335
                               + AL+V+N M +      + V + TII GL  VG+  +A 
Sbjct: 510 KPNNYTYSILIDGCFRNHDEQNALEVVNHMTSSNIEV-NGVVYQTIINGLCKVGQTSKAR 568

Query: 336 NLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG 395
            LL  ++ ++      ++YN+++ G F+   ++ A   +  M G G+  +  TY  +++G
Sbjct: 569 ELLANMIEEKRLCVSCMSYNSIIDGFFKEGEMDSAVAAYEEMCGNGISPNVITYTSLMNG 628

Query: 396 LCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN 455
           LC++N++D+A    D++       D   Y A+I G C+   +  A     EL++ G+ P+
Sbjct: 629 LCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIDGFCKRSNMESASALFSELLEEGLNPS 688

Query: 456 IVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
              YN +I G   L     A  + ++M K+GL  D  T+  L
Sbjct: 689 QPIYNSLISGFRNLGNMVAALDLYKKMLKDGLRCDLGTYTTL 730



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 113/221 (51%), Gaps = 5/221 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M+ LC  +R+ +A ++  +MK++G   ++ +Y  LI G+C+   M+ A  +F E+   G+
Sbjct: 626 MNGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIDGFCKRSNMESASALFSELLEEGL 685

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+   Y+ L+ G     ++    V    L+++M  ++ L  +   +  L+D L ++G +
Sbjct: 686 NPSQPIYNSLISGFRNLGNM----VAALDLYKKML-KDGLRCDLGTYTTLIDGLLKDGNL 740

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                +  +M     V +E     +++ L + G+     ++   M+K  +TP+++ YN++
Sbjct: 741 ILASELYTEMQAVGLVPDEIIYTVIVNGLSKKGQFVKVVKMFEEMKKNNVTPNVLIYNAV 800

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCG 221
           + G  + G    A++L +E +  G LP   T+ +LV G  G
Sbjct: 801 IAGHYREGNLDEAFRLHDEMLDKGILPDGATFDILVSGQVG 841



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 60/329 (18%), Positives = 133/329 (40%), Gaps = 36/329 (10%)

Query: 159 SRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEG 218
           S++V   +  G   +  ++N +++   K      A  ++ + ++   +P        +  
Sbjct: 148 SKLVDSAKSFGFEVNSRAFNYLLNAYSKDRQTDHAVDIVNQMLELDVIPFFPYVNRTLSA 207

Query: 219 LCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPD 278
           L   + L +A+++   M++           + +RA    + P E L VL   ++   +PD
Sbjct: 208 LVQRNSLTEAKELYSRMVAIGVDGDNVTTQLLMRASLREEKPAEALEVLSRAIERGAEPD 267

Query: 279 VITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLL 338
            +  +  +   CK   +  A  +L +M   K C P   T+T++I   +  G + +A+   
Sbjct: 268 SLLYSLAVQACCKTLDLAMANSLLREMKEKKLCVPSQETYTSVILASVKQGNMDDAI--- 324

Query: 339 YQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE 398
                                   RL+         + ML  G+  +      +I G C+
Sbjct: 325 ------------------------RLK---------DEMLSDGISMNVVAATSLITGHCK 351

Query: 399 SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVC 458
           +N L  A   +D +       ++  ++ +I+   ++G++ +A+ F  ++   G+TP++  
Sbjct: 352 NNDLVSALVLFDKMEKEGPSPNSVTFSVLIEWFRKNGEMEKALEFYKKMEVLGLTPSVFH 411

Query: 459 YNVVIDGACKLSMKREAYQILREMRKNGL 487
            + +I G  K     EA ++  E  + GL
Sbjct: 412 VHTIIQGWLKGQKHEEALKLFDESFETGL 440



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/249 (22%), Positives = 107/249 (42%), Gaps = 16/249 (6%)

Query: 259 NPTELLNVLVFMLQTQCQP-----DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAP 313
           NPT + +VLV  L    +      +    N ++N + K  + + A+ ++N M+       
Sbjct: 138 NPTPMASVLVSKLVDSAKSFGFEVNSRAFNYLLNAYSKDRQTDHAVDIVNQMLE-----L 192

Query: 314 DAVTF----TTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEE 369
           D + F       +  L+    + EA  L Y  M   G     VT   ++R   R  +  E
Sbjct: 193 DVIPFFPYVNRTLSALVQRNSLTEAKEL-YSRMVAIGVDGDNVTTQLLMRASLREEKPAE 251

Query: 370 AKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN-IHDNYVYAAMI 428
           A EV +  +  G   DS  Y++ +   C++  L  A     ++      +     Y ++I
Sbjct: 252 ALEVLSRAIERGAEPDSLLYSLAVQACCKTLDLAMANSLLREMKEKKLCVPSQETYTSVI 311

Query: 429 KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLN 488
               + G + +A+    E++  G++ N+V    +I G CK +    A  +  +M K G +
Sbjct: 312 LASVKQGNMDDAIRLKDEMLSDGISMNVVAATSLITGHCKNNDLVSALVLFDKMEKEGPS 371

Query: 489 PDAVTWRIL 497
           P++VT+ +L
Sbjct: 372 PNSVTFSVL 380


>gi|14532710|gb|AAK64156.1| unknown protein [Arabidopsis thaliana]
          Length = 974

 Score =  181 bits (459), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 129/490 (26%), Positives = 231/490 (47%), Gaps = 11/490 (2%)

Query: 10  VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSV 69
           V  A KL   M  +G VP   +Y  LI G C+   ++ A  +  EM   GV  ++ TYS+
Sbjct: 258 VDGALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSL 317

Query: 70  LVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAED 129
           L+ G+L+ R+ + A  L+ ++         +++    +   +  + +EG + +   + + 
Sbjct: 318 LIDGLLKGRNADAAKGLVHEMVSH-----GINIKPYMYDCCICVMSKEGVMEKAKALFDG 372

Query: 130 MPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG 189
           M     + +  A   +I+  CR         ++  M+KR +  S  +Y ++V G+C  G 
Sbjct: 373 MIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGD 432

Query: 190 CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNI 249
              AY +++E I  G  P+   Y  L++     S    A +VL+ M  +         N 
Sbjct: 433 LDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNS 492

Query: 250 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK 309
            +  L   K   E  + LV M++   +P+  T    I+G+ +      A K + +M   +
Sbjct: 493 LIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEM---R 549

Query: 310 FCA--PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRV 367
            C   P+ V  T +I      G++ EA +  Y+ M  +G      TY  ++ GLF+  +V
Sbjct: 550 ECGVLPNKVLCTGLINEYCKKGKVIEACSA-YRSMVDQGILGDAKTYTVLMNGLFKNDKV 608

Query: 368 EEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAM 427
           ++A+E+F  M G G+  D  +Y ++I+G  +   + +A   +D++V      +  +Y  +
Sbjct: 609 DDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNML 668

Query: 428 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
           + G CRSG+I +A   L E+   G+ PN V Y  +IDG CK     EA+++  EM+  GL
Sbjct: 669 LGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGL 728

Query: 488 NPDAVTWRIL 497
            PD+  +  L
Sbjct: 729 VPDSFVYTTL 738



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 131/570 (22%), Positives = 241/570 (42%), Gaps = 80/570 (14%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGY--------------------- 39
           +D LC + R+ +A  L  +M S G   +  +Y+ LI G                      
Sbjct: 284 IDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEMVSHGI 343

Query: 40  --------------CRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANV 85
                          + G M+ A  +FD M   G++P +  Y+ L+ G  R ++V +   
Sbjct: 344 NIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYE 403

Query: 86  LMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHM 145
           L+ ++ +R     ++ ++   +  +V  +C  G ++  + I ++M              +
Sbjct: 404 LLVEMKKR-----NIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTL 458

Query: 146 IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY 205
           I +  ++ R   A RV+  M+++G+ P +  YNS++ GL K      A   L E ++ G 
Sbjct: 459 IKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGL 518

Query: 206 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 265
            P+  TY   + G    S+   A K ++ M     +    +C   +   C      E  +
Sbjct: 519 KPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACS 578

Query: 266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 325
               M+      D  T   ++NG  K  ++++A ++  +M  GK  APD  ++  +I G 
Sbjct: 579 AYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREM-RGKGIAPDVFSYGVLINGF 637

Query: 326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 385
             +G +Q+A ++ +  M + G +P ++ YN +L G  R   +E+AKE+ + M   G+  +
Sbjct: 638 SKLGNMQKASSI-FDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPN 696

Query: 386 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAV---- 441
           + TY  +IDG C+S  L EA R +D++     + D++VY  ++ G CR   +  A+    
Sbjct: 697 AVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFG 756

Query: 442 ------------------------------HFLYELVDSGV----TPNIVCYNVVIDGAC 467
                                           L  L+D        PN V YN++ID  C
Sbjct: 757 TNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLC 816

Query: 468 KLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           K      A ++  +M+   L P  +T+  L
Sbjct: 817 KEGNLEAAKELFHQMQNANLMPTVITYTSL 846



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 115/497 (23%), Positives = 221/497 (44%), Gaps = 12/497 (2%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C    V + ++L  +MK R  V +  +Y T++ G C +G++D AY +  EM   G  PN 
Sbjct: 393 CREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNV 452

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           + Y+ L++  L+      A     ++ + MK E+ ++ +   + +L+  L +   ++E  
Sbjct: 453 VIYTTLIKTFLQNSRFGDA----MRVLKEMK-EQGIAPDIFCYNSLIIGLSKAKRMDEAR 507

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
               +M +       F  G  I     +     A + V  MR+ G+ P+ V    +++  
Sbjct: 508 SFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEY 567

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
           CK G  + A       +  G L    TY VL+ GL     ++ A ++ + M  K      
Sbjct: 568 CKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDV 627

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
               + +     + N  +  ++   M++    P+VI  N ++ GFC+ G IE+A ++L++
Sbjct: 628 FSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDE 687

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
           M   K   P+AVT+ TII G    G + EA   L+  M  +G  P    Y  ++ G  RL
Sbjct: 688 MSV-KGLHPNAVTYCTIIDGYCKSGDLAEAFR-LFDEMKLKGLVPDSFVYTTLVDGCCRL 745

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA----KRFWDDIVWPSNIHD 420
             VE A  +F      G  + +  +  +I+ + +  + +       R  D         +
Sbjct: 746 NDVERAITIFGTNKK-GCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPN 804

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
           +  Y  MI  LC+ G +  A    +++ ++ + P ++ Y  +++G  K+  + E + +  
Sbjct: 805 DVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFD 864

Query: 481 EMRKNGLNPDAVTWRIL 497
           E    G+ PD + + ++
Sbjct: 865 EAIAAGIEPDHIMYSVI 881



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 110/493 (22%), Positives = 221/493 (44%), Gaps = 19/493 (3%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           +C    +  A+ +  +M + G  PNVV YTTLI  + +      A +V  EM+  G+ P+
Sbjct: 427 MCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPD 486

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
              Y+ L+ G+ + + ++ A   + ++ E       L  N   +   +            
Sbjct: 487 IFCYNSLIIGLSKAKRMDEARSFLVEMVEN-----GLKPNAFTYGAFISGYIEASEFASA 541

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            +  ++M +   +  +  C  +I+  C+ G+   A      M  +G+     +Y  +++G
Sbjct: 542 DKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNG 601

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           L K+     A ++  E    G  P   +Y VL+ G     +++KA  +   M+ +     
Sbjct: 602 LFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPN 661

Query: 244 TRICNIYLRALCL---IKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
             I N+ L   C    I+   ELL+    M      P+ +T  T+I+G+CK G + EA +
Sbjct: 662 VIIYNMLLGGFCRSGEIEKAKELLDE---MSVKGLHPNAVTYCTIIDGYCKSGDLAEAFR 718

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           + ++M   K   PD+  +TT++ G   +  ++ A+ +      ++G +     +NA++  
Sbjct: 719 LFDEMKL-KGLVPDSFVYTTLVDGCCRLNDVERAITIFGT--NKKGCASSTAPFNALINW 775

Query: 361 LFRLRRVEEAKEVFNCMLGIGV----VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416
           +F+  + E   EV N ++          +  TY I+ID LC+   L+ AK  +  +   +
Sbjct: 776 VFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNAN 835

Query: 417 NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAY 476
            +     Y +++ G  + G+  E      E + +G+ P+ + Y+V+I+   K  M  +A 
Sbjct: 836 LMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKAL 895

Query: 477 QILREM-RKNGLN 488
            ++ +M  KN ++
Sbjct: 896 VLVDQMFAKNAVD 908



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 121/482 (25%), Positives = 214/482 (44%), Gaps = 20/482 (4%)

Query: 4   LCGLS---RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           + GLS   R+ EA     +M   G  PN  +Y   I GY    E   A K   EMR CGV
Sbjct: 494 IIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGV 553

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           LPN +  + L+    +   V  A       +  M ++  L  +   +  L++ L +   V
Sbjct: 554 LPNKVLCTGLINEYCKKGKVIEA----CSAYRSMVDQGILG-DAKTYTVLMNGLFKNDKV 608

Query: 121 NEVFRIAEDMPQGKSVNEE-FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           ++   I  +M +GK +  + F+ G +I+   + G    AS +   M + GLTP+++ YN 
Sbjct: 609 DDAEEIFREM-RGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNM 667

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++ G C+ G   +A +LL+E    G  P+  TY  +++G C   DL +A ++   M  K 
Sbjct: 668 LLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKG 727

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
            V  + +    +   C + N  E    +    +  C       N +IN   K G+ E   
Sbjct: 728 LVPDSFVYTTLVDGCCRL-NDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKT 786

Query: 300 KVLNDMVAG---KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
           +VLN ++ G   +F  P+ VT+  +I  L   G ++ A  L +Q M      P ++TY +
Sbjct: 787 EVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQ-MQNANLMPTVITYTS 845

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416
           +L G  ++ R  E   VF+  +  G+  D   Y+++I+   +     +A    D +   +
Sbjct: 846 LLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKN 905

Query: 417 NIHDNYVYA-----AMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSM 471
            + D    +     A++ G  + G++  A   +  +V     P+      +I+ +C  S 
Sbjct: 906 AVDDGCKLSISTCRALLSGFAKVGEMEVAEKVMENMVRLQYIPDSATVIELINESCISSN 965

Query: 472 KR 473
           +R
Sbjct: 966 QR 967



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 108/415 (26%), Positives = 194/415 (46%), Gaps = 53/415 (12%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M+ L    +V +A ++F +M+ +G  P+V SY  LI+G+ + G M  A  +FDEM   G+
Sbjct: 599 MNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGL 658

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN + Y++L+ G  R+ ++E+A  L+ ++       + L  N   +  ++D  C+ G +
Sbjct: 659 TPNVIIYNMLLGGFCRSGEIEKAKELLDEM-----SVKGLHPNAVTYCTIIDGYCKSGDL 713

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E FR+ ++M     V + F    ++D  CR      A   ++   K+G   S   +N++
Sbjct: 714 AEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAI-TIFGTNKKGCASSTAPFNAL 772

Query: 181 VHGLCKHGGCMRAYQLLEEGI-----QFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM 235
           ++ + K G      ++L   +     +FG  P++ TY ++++ LC E +LE A+++   M
Sbjct: 773 INWVFKFGKTELKTEVLNRLMDGSFDRFGK-PNDVTYNIMIDYLCKEGNLEAAKELFHQM 831

Query: 236 LSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 295
            +                                       P VIT  +++NG+ KMGR 
Sbjct: 832 QN-----------------------------------ANLMPTVITYTSLLNGYDKMGRR 856

Query: 296 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG----I 351
            E   V ++ +A     PD + ++ II   L  G   +AL L+ Q+  +     G    I
Sbjct: 857 AEMFPVFDEAIAAGI-EPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSI 915

Query: 352 VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLC-ESNQLDEA 405
            T  A+L G  ++  +E A++V   M+ +  + DS T   +I+  C  SNQ  EA
Sbjct: 916 STCRALLSGFAKVGEMEVAEKVMENMVRLQYIPDSATVIELINESCISSNQRVEA 970



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 113/481 (23%), Positives = 215/481 (44%), Gaps = 21/481 (4%)

Query: 26  VPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANV 85
           VP +     L+    R   +D+ + V+  M    V+ +  TY +L+    R  +V+    
Sbjct: 183 VPRLSRCKVLLDALLRWNRLDLFWDVYKGMVERNVVFDVKTYHMLIIAHCRAGNVQLGKD 242

Query: 86  LMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHM 145
           ++FK     KE    ++N                V+   ++ E M     V  ++    +
Sbjct: 243 VLFK---TEKEFRTATLN----------------VDGALKLKESMICKGLVPLKYTYDVL 283

Query: 146 IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY 205
           ID LC+  R   A  ++  M   G++    +Y+ ++ GL K      A  L+ E +  G 
Sbjct: 284 IDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEMVSHGI 343

Query: 206 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 265
               + Y   +  +  E  +EKA+ +   M++   + + +     +   C  KN  +   
Sbjct: 344 NIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYE 403

Query: 266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 325
           +LV M +        T  TV+ G C  G ++ A  ++ +M+A   C P+ V +TT+I   
Sbjct: 404 LLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASG-CRPNVVIYTTLIKTF 462

Query: 326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 385
           L   R  +A+ +L + M ++G +P I  YN+++ GL + +R++EA+     M+  G+  +
Sbjct: 463 LQNSRFGDAMRVLKE-MKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPN 521

Query: 386 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY 445
           + TY   I G  E+++   A ++  ++     + +  +   +I   C+ GK+ EA     
Sbjct: 522 AFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYR 581

Query: 446 ELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
            +VD G+  +   Y V+++G  K     +A +I REMR  G+ PD  ++ +L       G
Sbjct: 582 SMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLG 641

Query: 506 N 506
           N
Sbjct: 642 N 642



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 63/277 (22%), Positives = 116/277 (41%), Gaps = 47/277 (16%)

Query: 257 IKNPTELLNVLVFM-LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA 315
           + +P++LL+   ++  Q   +  + + + +    C  G  E+AL V+  M+   +  P A
Sbjct: 74  VDDPSKLLSFFNWVDSQKVTEQKLDSFSFLALDLCNFGSFEKALSVVERMIERNW--PVA 131

Query: 316 VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN 375
             +++I+       R  +            G S   V +  +  G      +EEA  VF+
Sbjct: 132 EVWSSIV-------RCSQEF---------VGKSDDGVLFGILFDGYIAKEYIEEAVFVFS 175

Query: 376 CMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD---DIVWPSNIHDNYVYAAMIKGLC 432
             +G+ +V   +   +++D L   N+LD    FWD    +V  + + D   Y  +I   C
Sbjct: 176 SSMGLELVPRLSRCKVLLDALLRWNRLD---LFWDVYKGMVERNVVFDVKTYHMLIIAHC 232

Query: 433 RSGKIHEAVHFLYE---------------------LVDSGVTPNIVCYNVVIDGACKLSM 471
           R+G +      L++                     ++  G+ P    Y+V+IDG CK+  
Sbjct: 233 RAGNVQLGKDVLFKTEKEFRTATLNVDGALKLKESMICKGLVPLKYTYDVLIDGLCKIKR 292

Query: 472 KREAYQILREMRKNGLNPDAVTWRIL-DKLHGNRGND 507
             +A  +L EM   G++ D  T+ +L D L   R  D
Sbjct: 293 LEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNAD 329


>gi|224713518|gb|ACN62066.1| PPR-817 [Zea mays]
          Length = 817

 Score =  181 bits (459), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 129/496 (26%), Positives = 239/496 (48%), Gaps = 23/496 (4%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC    + +A      M ++  +PN  +Y  LI+GY  TG+   A +VF EMR   +LP+
Sbjct: 267 LCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPD 326

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVN-----NAAFANLVDSLCREG 118
            +T S+L+  + +   ++ A  +   +  + +  +  S N      A    LVD      
Sbjct: 327 VVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVD------ 380

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGH-MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
            + ++F    D+  G  +  +F   + +I +    G    A  +   MR  G+ P +V+Y
Sbjct: 381 -MTDLF----DLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTY 435

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVL-QFML 236
            +++  LC+ G    A +   + I  G  P ++ Y  L++G C    L KA++++ + M 
Sbjct: 436 RTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMN 495

Query: 237 SKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIE 296
           +   +D     +I +  LC +    +  N+    +     PD +  N +++G+C +G++E
Sbjct: 496 NGMHLDIVFFSSI-INNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKME 554

Query: 297 EALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
           +AL+V + MV+     P+ V + T++ G   +GRI E L+ L++ M QRG  P  + Y+ 
Sbjct: 555 KALRVFDAMVSAGI-EPNVVGYGTLVNGYCKIGRIDEGLS-LFREMLQRGIKPSTILYSI 612

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416
           ++ GLF   R   AK  F+ M   G+  D  TY IV+ GL ++   DEA   + ++    
Sbjct: 613 IIDGLFEAGRTVPAKMKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKEL-RAM 671

Query: 417 NIHDNYV-YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREA 475
           N+  N +    MI G+ ++ ++ EA      +  S + P++V Y+++I    K  +  EA
Sbjct: 672 NVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPSVVTYSIMITNLIKEGLVEEA 731

Query: 476 YQILREMRKNGLNPDA 491
             +   M+  G  P++
Sbjct: 732 EDMFSSMQNAGCEPNS 747



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 132/537 (24%), Positives = 237/537 (44%), Gaps = 50/537 (9%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHV--PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHC 58
           +  LC   + G+A  L   M   G V  PNVV+Y T+I G+ + G+++ A  +F EM   
Sbjct: 192 LKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQR 251

Query: 59  GVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREG 118
           G+ P+ +TY+ +V  + + R +++A   +     R    + +  NN  + NL+      G
Sbjct: 252 GIPPDLVTYNSVVHALCKARAMDKAEAFL-----RQMVNKRVLPNNWTYNNLIYGYSSTG 306

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
              E  R+ ++M +   + +      ++ SLC+ G+   A  V   M  +G  P + SYN
Sbjct: 307 QWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYN 366

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS- 237
            +++G    G  +    L +  +  G  P  +T+ VL++       L+KA  +   M   
Sbjct: 367 IMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDH 426

Query: 238 --KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPD----------------- 278
             K DV   R     + ALC I    + +     M+     PD                 
Sbjct: 427 GVKPDVVTYRTV---IAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSL 483

Query: 279 ------------------VITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTT 320
                             ++  +++IN  CK+GR+ +A  +  D+       PDAV +  
Sbjct: 484 LKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIF-DLTVNVGLHPDAVVYNM 542

Query: 321 IIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI 380
           ++ G   VG++++AL + +  M   G  P +V Y  ++ G  ++ R++E   +F  ML  
Sbjct: 543 LMDGYCLVGKMEKALRV-FDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQR 601

Query: 381 GVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEA 440
           G+   +  Y+I+IDGL E+ +   AK  + ++       D   Y  +++GL ++    EA
Sbjct: 602 GIKPSTILYSIIIDGLFEAGRTVPAKMKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEA 661

Query: 441 VHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           +    EL    V  NI+  N +IDG  +     EA  +   + ++ L P  VT+ I+
Sbjct: 662 IFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPSVVTYSIM 718



 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 129/493 (26%), Positives = 227/493 (46%), Gaps = 15/493 (3%)

Query: 13  AHKLFFDMKSRGHVPNVVS-----YTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTY 67
           A  LF    SR   P V+S     Y  L+    R    ++A   F ++   G+  N +  
Sbjct: 93  AVALFNRAASRAQGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIA 152

Query: 68  SVLVRGVLRTRDVERA-NVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRI 126
           + L+ G    +  + A ++L+ +  E     +  S     ++ L+ SLC +G   +   +
Sbjct: 153 NHLLEGFCEAKRTDEALDILLHRTPELGCVPDVFS-----YSILLKSLCDQGKSGQADDL 207

Query: 127 AEDMPQGKSVNEE--FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
              M +G +V      A   +ID   + G  + A  +   M +RG+ P LV+YNS+VH L
Sbjct: 208 LRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHAL 267

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
           CK     +A   L + +    LP+  TY  L+ G       ++A +V + M     +   
Sbjct: 268 CKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDV 327

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
              ++ + +LC      E  +V   M      PDV + N ++NG+   G + + +  L D
Sbjct: 328 VTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVD-MTDLFD 386

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
           ++ G   APD  TF  +I    N G + +A+ +++  M   G  P +VTY  V+  L R+
Sbjct: 387 LMLGDGIAPDFYTFNVLIKAYANCGMLDKAM-IIFNEMRDHGVKPDVVTYRTVIAALCRI 445

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY 424
            ++++A E FN M+  GV  D   Y  +I G C    L +AK    +I+      D   +
Sbjct: 446 GKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFF 505

Query: 425 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484
           +++I  LC+ G++ +A +     V+ G+ P+ V YN+++DG C +    +A ++   M  
Sbjct: 506 SSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVS 565

Query: 485 NGLNPDAVTWRIL 497
            G+ P+ V +  L
Sbjct: 566 AGIEPNVVGYGTL 578



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 121/506 (23%), Positives = 226/506 (44%), Gaps = 42/506 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M  LC   ++ EA  +F  M  +G  P+V SY  +++GY   G +     +FD M   G+
Sbjct: 334 MGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGI 393

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+  T++VL++       +++A ++  ++      +  +  +   +  ++ +LCR G +
Sbjct: 394 APDFYTFNVLIKAYANCGMLDKAMIIFNEM-----RDHGVKPDVVTYRTVIAALCRIGKM 448

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           ++       M       +++A   +I   C  G    A  ++  +   G+   +V ++SI
Sbjct: 449 DDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSI 508

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++ LCK G  M A  + +  +  G  P    Y +L++G C    +EKA            
Sbjct: 509 INNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKA------------ 556

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                  L V   M+    +P+V+   T++NG+CK+GRI+E L 
Sbjct: 557 -----------------------LRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLS 593

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +  +M+  +   P  + ++ II GL   GR   A  + +  M + G +  I TYN VLRG
Sbjct: 594 LFREMLQ-RGIKPSTILYSIIIDGLFEAGRTVPA-KMKFHEMTESGIAMDICTYNIVLRG 651

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           LF+ R  +EA  +F  +  + V  +  T   +IDG+ ++ +++EAK  +  I     +  
Sbjct: 652 LFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPS 711

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              Y+ MI  L + G + EA      + ++G  PN    N V+    K +    A   L 
Sbjct: 712 VVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVRELLKKNEIVRAGAYLS 771

Query: 481 EMRKNGLNPDAVTWRILDKLHGNRGN 506
           ++ +   + + +T  +L  L  ++G 
Sbjct: 772 KIDERNFSLEHLTAMLLVDLFSSKGT 797



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 125/238 (52%), Gaps = 3/238 (1%)

Query: 270 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG 329
           +L+T  + ++I  N ++ GFC+  R +EAL +L        C PD  +++ ++  L + G
Sbjct: 140 LLRTGLRVNIIIANHLLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQG 199

Query: 330 RIQEALNLLYQVMPQRGY--SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADST 387
           +  +A +LL ++M + G   SP +V YN V+ G F+   V +A ++F  M+  G+  D  
Sbjct: 200 KSGQADDLL-RMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLV 258

Query: 388 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYEL 447
           TY  V+  LC++  +D+A+ F   +V    + +N+ Y  +I G   +G+  EAV    E+
Sbjct: 259 TYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEM 318

Query: 448 VDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
               + P++V  ++++   CK    +EA  +   M   G NPD  ++ I+   +  +G
Sbjct: 319 RRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKG 376



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 61/125 (48%), Gaps = 5/125 (4%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D +    RV EA  LF  +     VP+VV+Y+ +I    + G ++ A  +F  M++ G 
Sbjct: 684 IDGMFQTRRVEEAKDLFASISRSRLVPSVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGC 743

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PNS   + +VR +L+  ++ RA   + K+ ER     + S+ +     LVD    +G  
Sbjct: 744 EPNSRLLNHVVRELLKKNEIVRAGAYLSKIDER-----NFSLEHLTAMLLVDLFSSKGTC 798

Query: 121 NEVFR 125
            E  R
Sbjct: 799 REQIR 803


>gi|414883768|tpg|DAA59782.1| TPA: hypothetical protein ZEAMMB73_461975 [Zea mays]
          Length = 683

 Score =  181 bits (458), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 133/498 (26%), Positives = 240/498 (48%), Gaps = 19/498 (3%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC L R G+A  L   M   G VP+ V Y T+IH     G +  A  + DEM   G   +
Sbjct: 187 LCRLGRAGDALALLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAAMLLDEMLLMGCAAD 246

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             T++ LV G+     V  A     +L +RM  +  +  +   +  L+  LCR    +E 
Sbjct: 247 VNTFNDLVLGLCGLGRVREAA----RLVDRMMTQGCMP-SVVTYGFLLQGLCRTRQADEA 301

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHG----ASRVVYVMRKRGLTPSLVSYNS 179
             +   +P+   V        M++++ R     G    A+ +  +M  +G  P + +Y+ 
Sbjct: 302 CAMLGRLPEVNVV--------MLNTVIRGCLTEGKLARATELYEMMGSKGCPPDVHTYSI 353

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++HGLCK G    A ++L+E  + G  P+  TY  L+   C     + AR +L  ML+K 
Sbjct: 354 LMHGLCKLGRFGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMLAKG 413

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
               ++  N  + ALC      +   ++  M    C+PD+ T NT+I   C    +EEA 
Sbjct: 414 FSMNSQGYNGIIYALCKDGKLDQATRLVQEMKSQGCKPDICTYNTMIYHLCNNDLMEEAE 473

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
            +  +++     A + +T+ T+I  LL  GR QE L L  +++   G    +++YN +++
Sbjct: 474 HIFRNLIEEGVVA-NGITYNTLIHALLRNGRWQEGLRLASEML-LHGCQLDVISYNGLIK 531

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
            L +   V+ +  +   M+  G+  ++ +Y ++I+ LC++ ++ +A     +++      
Sbjct: 532 ALCKEGNVDRSMALLEEMVTKGIKPNNFSYNMLINELCKAGKVRDALELSKEMLNQGLTP 591

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           D   Y  +I GLC+ G  H A++ L +L +  V P+IV YN++I   CK+ +  +A  +L
Sbjct: 592 DIVTYNTLINGLCKVGWTHAALNLLEKLPNENVHPDIVTYNILISWHCKVRLLDDAAMLL 651

Query: 480 REMRKNGLNPDAVTWRIL 497
            +    G+ P+  TW ++
Sbjct: 652 DKAISGGIVPNERTWGMM 669



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 130/490 (26%), Positives = 223/490 (45%), Gaps = 16/490 (3%)

Query: 11  GEAHKLFFDMKSRGHV-PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSV 69
           G A  L   M  R  V P+  SY  ++    R      A  ++  M    V P + T+ V
Sbjct: 123 GRALHLLDQMPRRFAVSPSFRSYNVVLSTLARADCHADALLLYRRMLRDRVPPTTFTFGV 182

Query: 70  LVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAED 129
             R + R      A  L+     R         +   +  ++ +L  +G V E   + ++
Sbjct: 183 AARALCRLGRAGDALALL-----RGMARHGCVPDAVLYQTVIHALVAQGGVAEAAMLLDE 237

Query: 130 MPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG 189
           M       +      ++  LC  GR   A+R+V  M  +G  PS+V+Y  ++ GLC    
Sbjct: 238 MLLMGCAADVNTFNDLVLGLCGLGRVREAARLVDRMMTQGCMPSVVTYGFLLQGLC---- 293

Query: 190 CMRAYQLLEEGIQFGYLPSEHT--YKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC 247
             R  Q  E     G LP  +      ++ G   E  L +A ++ + M SK         
Sbjct: 294 --RTRQADEACAMLGRLPEVNVVMLNTVIRGCLTEGKLARATELYEMMGSKGCPPDVHTY 351

Query: 248 NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA 307
           +I +  LC +      + +L  M +  C P+++T +T+++ FC+ G  ++A  +L+ M+A
Sbjct: 352 SILMHGLCKLGRFGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMLA 411

Query: 308 GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRV 367
             F + ++  +  II+ L   G++ +A  L+ Q M  +G  P I TYN ++  L     +
Sbjct: 412 KGF-SMNSQGYNGIIYALCKDGKLDQATRLV-QEMKSQGCKPDICTYNTMIYHLCNNDLM 469

Query: 368 EEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAM 427
           EEA+ +F  ++  GVVA+  TY  +I  L  + +  E  R   +++      D   Y  +
Sbjct: 470 EEAEHIFRNLIEEGVVANGITYNTLIHALLRNGRWQEGLRLASEMLLHGCQLDVISYNGL 529

Query: 428 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
           IK LC+ G +  ++  L E+V  G+ PN   YN++I+  CK    R+A ++ +EM   GL
Sbjct: 530 IKALCKEGNVDRSMALLEEMVTKGIKPNNFSYNMLINELCKAGKVRDALELSKEMLNQGL 589

Query: 488 NPDAVTWRIL 497
            PD VT+  L
Sbjct: 590 TPDIVTYNTL 599



 Score =  157 bits (398), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 118/432 (27%), Positives = 204/432 (47%), Gaps = 15/432 (3%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP- 62
           LCGL RV EA +L   M ++G +P+VV+Y  L+ G CRT + D A  +       G LP 
Sbjct: 257 LCGLGRVREAARLVDRMMTQGCMPSVVTYGFLLQGLCRTRQADEACAML------GRLPE 310

Query: 63  -NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVN 121
            N +  + ++RG L    + RA     +L+E M  +     +   ++ L+  LC+ G   
Sbjct: 311 VNVVMLNTVIRGCLTEGKLARAT----ELYEMMGSK-GCPPDVHTYSILMHGLCKLGRFG 365

Query: 122 EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
              R+ ++M +            ++ S CR+G    A  ++  M  +G + +   YN I+
Sbjct: 366 SAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMLAKGFSMNSQGYNGII 425

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
           + LCK G   +A +L++E    G  P   TY  ++  LC    +E+A  + + ++ +  V
Sbjct: 426 YALCKDGKLDQATRLVQEMKSQGCKPDICTYNTMIYHLCNNDLMEEAEHIFRNLIEEGVV 485

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
                 N  + AL       E L +   ML   CQ DVI+ N +I   CK G ++ ++ +
Sbjct: 486 ANGITYNTLIHALLRNGRWQEGLRLASEMLLHGCQLDVISYNGLIKALCKEGNVDRSMAL 545

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
           L +MV  K   P+  ++  +I  L   G++++AL L  +++ Q G +P IVTYN ++ GL
Sbjct: 546 LEEMVT-KGIKPNNFSYNMLINELCKAGKVRDALELSKEMLNQ-GLTPDIVTYNTLINGL 603

Query: 362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
            ++     A  +   +    V  D  TY I+I   C+   LD+A    D  +    + + 
Sbjct: 604 CKVGWTHAALNLLEKLPNENVHPDIVTYNILISWHCKVRLLDDAAMLLDKAISGGIVPNE 663

Query: 422 YVYAAMIKGLCR 433
             +  M++   R
Sbjct: 664 RTWGMMVQNFVR 675



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 112/419 (26%), Positives = 194/419 (46%), Gaps = 6/419 (1%)

Query: 88  FKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMID 147
             L ++M     +S +  ++  ++ +L R     +   +   M + +     F  G    
Sbjct: 126 LHLLDQMPRRFAVSPSFRSYNVVLSTLARADCHADALLLYRRMLRDRVPPTTFTFGVAAR 185

Query: 148 SLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLP 207
           +LCR GR   A  ++  M + G  P  V Y +++H L   GG   A  LL+E +  G   
Sbjct: 186 ALCRLGRAGDALALLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAAMLLDEMLLMGCAA 245

Query: 208 SEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVL 267
             +T+  LV GLCG   + +A +++  M+++  +         L+ LC  +   E     
Sbjct: 246 DVNTFNDLVLGLCGLGRVREAARLVDRMMTQGCMPSVVTYGFLLQGLCRTRQADEA---- 301

Query: 268 VFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLN 327
             ML    + +V+ LNTVI G    G++  A + L +M+  K C PD  T++ ++ GL  
Sbjct: 302 CAMLGRLPEVNVVMLNTVIRGCLTEGKLARATE-LYEMMGSKGCPPDVHTYSILMHGLCK 360

Query: 328 VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADST 387
           +GR   A+ +L + M ++G +P IVTY+ +L    R    ++A+ + + ML  G   +S 
Sbjct: 361 LGRFGSAVRMLDE-MEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMLAKGFSMNSQ 419

Query: 388 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYEL 447
            Y  +I  LC+  +LD+A R   ++       D   Y  MI  LC +  + EA H    L
Sbjct: 420 GYNGIIYALCKDGKLDQATRLVQEMKSQGCKPDICTYNTMIYHLCNNDLMEEAEHIFRNL 479

Query: 448 VDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           ++ GV  N + YN +I    +    +E  ++  EM  +G   D +++  L K     GN
Sbjct: 480 IEEGVVANGITYNTLIHALLRNGRWQEGLRLASEMLLHGCQLDVISYNGLIKALCKEGN 538



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 83/322 (25%), Positives = 154/322 (47%), Gaps = 6/322 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M  LC L R G A ++  +M+ +G  PN+V+Y+TL+H +CR G  D A  + D+M   G 
Sbjct: 355 MHGLCKLGRFGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMLAKGF 414

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             NS  Y+ ++  + +   +++A     +L + MK  +    +   +  ++  LC    +
Sbjct: 415 SMNSQGYNGIIYALCKDGKLDQAT----RLVQEMK-SQGCKPDICTYNTMIYHLCNNDLM 469

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E   I  ++ +   V        +I +L R+GR     R+   M   G    ++SYN +
Sbjct: 470 EEAEHIFRNLIEEGVVANGITYNTLIHALLRNGRWQEGLRLASEMLLHGCQLDVISYNGL 529

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +  LCK G   R+  LLEE +  G  P+  +Y +L+  LC    +  A ++ + ML++  
Sbjct: 530 IKALCKEGNVDRSMALLEEMVTKGIKPNNFSYNMLINELCKAGKVRDALELSKEMLNQGL 589

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                  N  +  LC +      LN+L  +      PD++T N +I+  CK+  +++A  
Sbjct: 590 TPDIVTYNTLINGLCKVGWTHAALNLLEKLPNENVHPDIVTYNILISWHCKVRLLDDAAM 649

Query: 301 VLNDMVAGKFCAPDAVTFTTII 322
           +L+  ++G    P+  T+  ++
Sbjct: 650 LLDKAISGGI-VPNERTWGMMV 670


>gi|302815701|ref|XP_002989531.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
 gi|300142709|gb|EFJ09407.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
          Length = 436

 Score =  181 bits (458), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 120/446 (26%), Positives = 210/446 (47%), Gaps = 43/446 (9%)

Query: 2   DQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVL 61
           D      R+ +  +++  M   G+      Y  LI   C+ G  D AYK+   MR     
Sbjct: 18  DGFAKAGRLEQVKEVYQGMVEAGYTLRASGYGILISCLCKVGNFDEAYKLLHTMRLKRFK 77

Query: 62  PNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVN 121
             ++ YS ++  + +   VE A  L+ K+  R    + L+     +  +V+ LC+   ++
Sbjct: 78  RKAIAYSTIINWLCKLNRVEEARELIEKM-ARYAPPDALT-----YGPIVERLCKTKRID 131

Query: 122 EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
           +     E+M       + F    ++  LC+  +   A  +   M K+ + P++V+YN+++
Sbjct: 132 DALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVVTYNTLI 191

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
           +GLCK      AY+L +E    GY+P+E +Y  L++G C + DL  A+ V          
Sbjct: 192 NGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVF--------- 242

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
           D+                          M+++ C P+V+T  T+I+G  K G+++ A +V
Sbjct: 243 DK--------------------------MVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEV 276

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
           L+ MV  K   P+  T++ +I G   V R+ EA  LL Q++ Q G +P +VTYN +L  L
Sbjct: 277 LDGMVK-KGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQ-GIAPTVVTYNILLNSL 334

Query: 362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
            R  ++E+A ++F  M          TY  ++  LC   QLD A R + +++      D 
Sbjct: 335 CRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDA 394

Query: 422 YVYAAMIKGLCRSGKIHEAVHFLYEL 447
             Y  +  GL R+GK+HEA   + ++
Sbjct: 395 ITYDTLAWGLTRAGKVHEAQELMEKM 420



 Score =  174 bits (442), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 101/333 (30%), Positives = 172/333 (51%), Gaps = 3/333 (0%)

Query: 165 MRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESD 224
           M  R + P   ++N++  G  K G   +  ++ +  ++ GY      Y +L+  LC   +
Sbjct: 1   MALRRVIPGAATFNTVADGFAKAGRLEQVKEVYQGMVEAGYTLRASGYGILISCLCKVGN 60

Query: 225 LEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNT 284
            ++A K+L  M  K+   +    +  +  LC + N  E    L+  +     PD +T   
Sbjct: 61  FDEAYKLLHTMRLKRFKRKAIAYSTIINWLCKL-NRVEEARELIEKMARYAPPDALTYGP 119

Query: 285 VINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ 344
           ++   CK  RI++AL  + +M A +   PDA  +  ++ GL    +++EA  LL++ M +
Sbjct: 120 IVERLCKTKRIDDALATVEEM-ATRGIKPDAFIYNFVLSGLCQEEKVEEA-RLLFEKMVK 177

Query: 345 RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 404
           +  +P +VTYN ++ GL +  R+E A E+F  M G G V    +Y  +IDG C+   L  
Sbjct: 178 QRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVA 237

Query: 405 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
           AK  +D +V  + + +   Y  +I GL +SGK+  A   L  +V  GVTPN+  Y+ +ID
Sbjct: 238 AKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLID 297

Query: 465 GACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           G CK+    EA+++L +M   G+ P  VT+ IL
Sbjct: 298 GFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNIL 330



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 106/393 (26%), Positives = 188/393 (47%), Gaps = 3/393 (0%)

Query: 105 AAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYV 164
           A F  + D   + G + +V  + + M +          G +I  LC+ G    A ++++ 
Sbjct: 11  ATFNTVADGFAKAGRLEQVKEVYQGMVEAGYTLRASGYGILISCLCKVGNFDEAYKLLHT 70

Query: 165 MRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESD 224
           MR +      ++Y++I++ LCK      A +L+E+  ++   P   TY  +VE LC    
Sbjct: 71  MRLKRFKRKAIAYSTIINWLCKLNRVEEARELIEKMARYA-PPDALTYGPIVERLCKTKR 129

Query: 225 LEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNT 284
           ++ A   ++ M ++       I N  L  LC  +   E   +   M++ +  P+V+T NT
Sbjct: 130 IDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVVTYNT 189

Query: 285 VINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ 344
           +ING CK  RIE A ++  +M AGK   P  V++ T+I G      +  A ++ +  M +
Sbjct: 190 LINGLCKAWRIETAYELFKEM-AGKGYVPTEVSYNTLIDGFCKKKDLVAAKDV-FDKMVR 247

Query: 345 RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 404
               P +VTY  ++ GL +  +V+ A EV + M+  GV  +  TY+ +IDG C+  ++DE
Sbjct: 248 SNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDE 307

Query: 405 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
           A +  + +V          Y  ++  LCR+ K+ +A      +      P +V YN ++ 
Sbjct: 308 AHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLR 367

Query: 465 GACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
             C       A+++  EM   G  PDA+T+  L
Sbjct: 368 ALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTL 400



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 85/338 (25%), Positives = 164/338 (48%), Gaps = 41/338 (12%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +++LC   R+ +A     +M +RG  P+   Y  ++ G C+  +++ A  +F++M    +
Sbjct: 121 VERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRI 180

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +TY+ L+ G+ +   +E A    ++L++ M  +  +     ++  L+D  C++  +
Sbjct: 181 NPNVVTYNTLINGLCKAWRIETA----YELFKEMAGKGYVP-TEVSYNTLIDGFCKKKDL 235

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                + + M +   V        +ID L +SG+   A+ V+  M K+G+TP++ +Y+ +
Sbjct: 236 VAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCL 295

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G CK      A++LLE+ +  G  P+  TY +L+  LC    LE A K+ + M     
Sbjct: 296 IDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGM----- 350

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                          Q +C P V+T NT++   C   +++ A +
Sbjct: 351 ------------------------------AQRRCHPTVVTYNTLLRALCHHKQLDGAHR 380

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLL 338
           +  +M+A K C PDA+T+ T+ +GL   G++ EA  L+
Sbjct: 381 LYAEMIA-KGCPPDAITYDTLAWGLTRAGKVHEAQELM 417


>gi|356497981|ref|XP_003517834.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 543

 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 123/494 (24%), Positives = 234/494 (47%), Gaps = 13/494 (2%)

Query: 7   LSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLT 66
           +  V  A   +  M +    P V  +  L     +      A  +   M + GV PN  T
Sbjct: 4   VKSVDVALDFYHKMVTMKPFPCVKDFNLLFGIVAKMKHYTTAISLIKHMSYIGVKPNVST 63

Query: 67  YSVLVRGVLR-TRDVERANVL--MFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           +++++  + R    V   +VL  MFK+         +  +   F  +V+ LC EG V + 
Sbjct: 64  HNIVINCLCRLNHTVFGFSVLGLMFKI--------GVEPSIVTFTTIVNGLCVEGNVAQA 115

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            R  + +      ++ +  G +I+ LC+ G +  A   +  M ++     + +Y+++V G
Sbjct: 116 IRFVDHLKDMGYESDRYTRGAIINGLCKVGHSSAALSYLKKMEEQNCNLDVTAYSAVVDG 175

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LCK G    A  L  +    G  P+  TY  L+ GLC     ++A  +L  M+ K  +  
Sbjct: 176 LCKDGMVFEALDLFSQMTGKGIQPNLFTYNCLIHGLCNFDRWKEAAPLLANMMRKGIMPD 235

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
            +  N+           +   ++  FM     + +V+T N++I   C + ++++A++V  
Sbjct: 236 VQTFNVIAGRFLKTGMISRAKSIFSFMGHMGIEHNVVTYNSIIGAHCMLNQMKDAMEVF- 294

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           D++  K C P+ VT+ ++I G      + +A+  L + M   G  P +VT++ ++ G  +
Sbjct: 295 DLMIRKGCLPNIVTYNSLIHGWCETKNMNKAMYFLGE-MVNNGLDPDVVTWSTLIGGFCK 353

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
             +   AKE+F  M   G + D  T AI++DGL + +   EA   + ++   ++  D  +
Sbjct: 354 AGKPVAAKELFFVMHKHGQLPDLQTCAIILDGLFKCHFHSEAMSLFRELEKMNSDLDIII 413

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y+ ++ G+C SGK+++A+     L   GV  ++V YN++I+G CK  +  +A  +L +M 
Sbjct: 414 YSIILNGMCSSGKLNDALELFSYLSSKGVKIDVVTYNIMINGLCKEGLLDDAEDLLMKME 473

Query: 484 KNGLNPDAVTWRIL 497
           +NG  PD  T+ + 
Sbjct: 474 ENGCPPDECTYNVF 487



 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 120/478 (25%), Positives = 221/478 (46%), Gaps = 7/478 (1%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M   G  PNV ++  +I+  CR       + V   M   GV P+ +T++ +V G+    +
Sbjct: 52  MSYIGVKPNVSTHNIVINCLCRLNHTVFGFSVLGLMFKIGVEPSIVTFTTIVNGLCVEGN 111

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
           V +A +      + M  E D     A    +++ LC+ G+ +      + M +     + 
Sbjct: 112 VAQA-IRFVDHLKDMGYESDRYTRGA----IINGLCKVGHSSAALSYLKKMEEQNCNLDV 166

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
            A   ++D LC+ G    A  +   M  +G+ P+L +YN ++HGLC       A  LL  
Sbjct: 167 TAYSAVVDGLCKDGMVFEALDLFSQMTGKGIQPNLFTYNCLIHGLCNFDRWKEAAPLLAN 226

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
            ++ G +P   T+ V+         + +A+ +  FM            N  + A C++  
Sbjct: 227 MMRKGIMPDVQTFNVIAGRFLKTGMISRAKSIFSFMGHMGIEHNVVTYNSIIGAHCMLNQ 286

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
             + + V   M++  C P+++T N++I+G+C+   + +A+  L +MV      PD VT++
Sbjct: 287 MKDAMEVFDLMIRKGCLPNIVTYNSLIHGWCETKNMNKAMYFLGEMVNNGL-DPDVVTWS 345

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
           T+I G    G+   A  L + VM + G  P + T   +L GLF+     EA  +F  +  
Sbjct: 346 TLIGGFCKAGKPVAAKELFF-VMHKHGQLPDLQTCAIILDGLFKCHFHSEAMSLFRELEK 404

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
           +    D   Y+I+++G+C S +L++A   +  +       D   Y  MI GLC+ G + +
Sbjct: 405 MNSDLDIIIYSIILNGMCSSGKLNDALELFSYLSSKGVKIDVVTYNIMINGLCKEGLLDD 464

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           A   L ++ ++G  P+   YNV + G  +     ++ + L  M+  G   +A T ++L
Sbjct: 465 AEDLLMKMEENGCPPDECTYNVFVQGLLRRYEISKSTKYLMFMKGKGFRANATTTKLL 522



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 97/394 (24%), Positives = 171/394 (43%), Gaps = 42/394 (10%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    V EA  LF  M  +G  PN+ +Y  LIHG C       A  +   M   G+
Sbjct: 173 VDGLCKDGMVFEALDLFSQMTGKGIQPNLFTYNCLIHGLCNFDRWKEAAPLLANMMRKGI 232

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P+  T++V+    L+T  + RA  + F     M  E ++   N+               
Sbjct: 233 MPDVQTFNVIAGRFLKTGMISRAKSI-FSFMGHMGIEHNVVTYNS--------------- 276

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                                   +I + C   +   A  V  +M ++G  P++V+YNS+
Sbjct: 277 ------------------------IIGAHCMLNQMKDAMEVFDLMIRKGCLPNIVTYNSL 312

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +HG C+     +A   L E +  G  P   T+  L+ G C       A+++   M     
Sbjct: 313 IHGWCETKNMNKAMYFLGEMVNNGLDPDVVTWSTLIGGFCKAGKPVAAKELFFVMHKHGQ 372

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           +   + C I L  L      +E +++   + +     D+I  + ++NG C  G++ +AL+
Sbjct: 373 LPDLQTCAIILDGLFKCHFHSEAMSLFRELEKMNSDLDIIIYSIILNGMCSSGKLNDALE 432

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           + +  ++ K    D VT+  +I GL   G + +A +LL + M + G  P   TYN  ++G
Sbjct: 433 LFS-YLSSKGVKIDVVTYNIMINGLCKEGLLDDAEDLLMK-MEENGCPPDECTYNVFVQG 490

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVID 394
           L R   + ++ +    M G G  A++TT  ++I+
Sbjct: 491 LLRRYEISKSTKYLMFMKGKGFRANATTTKLLIN 524



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 67/267 (25%), Positives = 113/267 (42%), Gaps = 2/267 (0%)

Query: 235 MLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGR 294
           M++ K     +  N+    +  +K+ T  ++++  M     +P+V T N VIN  C++  
Sbjct: 17  MVTMKPFPCVKDFNLLFGIVAKMKHYTTAISLIKHMSYIGVKPNVSTHNIVINCLCRLNH 76

Query: 295 IEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTY 354
                 VL  M       P  VTFTTI+ GL   G + +A+  +   +   GY     T 
Sbjct: 77  TVFGFSVLGLMFKIG-VEPSIVTFTTIVNGLCVEGNVAQAIRFVDH-LKDMGYESDRYTR 134

Query: 355 NAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVW 414
            A++ GL ++     A      M       D T Y+ V+DGLC+   + EA   +  +  
Sbjct: 135 GAIINGLCKVGHSSAALSYLKKMEEQNCNLDVTAYSAVVDGLCKDGMVFEALDLFSQMTG 194

Query: 415 PSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKRE 474
                + + Y  +I GLC   +  EA   L  ++  G+ P++  +NV+     K  M   
Sbjct: 195 KGIQPNLFTYNCLIHGLCNFDRWKEAAPLLANMMRKGIMPDVQTFNVIAGRFLKTGMISR 254

Query: 475 AYQILREMRKNGLNPDAVTWRILDKLH 501
           A  I   M   G+  + VT+  +   H
Sbjct: 255 AKSIFSFMGHMGIEHNVVTYNSIIGAH 281



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 84/182 (46%), Gaps = 2/182 (1%)

Query: 321 IIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI 380
           ++FG++   +       L + M   G  P + T+N V+  L RL        V   M  I
Sbjct: 31  LLFGIVAKMKHYTTAISLIKHMSYIGVKPNVSTHNIVINCLCRLNHTVFGFSVLGLMFKI 90

Query: 381 GVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEA 440
           GV     T+  +++GLC    + +A RF D +       D Y   A+I GLC+ G    A
Sbjct: 91  GVEPSIVTFTTIVNGLCVEGNVAQAIRFVDHLKDMGYESDRYTRGAIINGLCKVGHSSAA 150

Query: 441 VHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKL 500
           + +L ++ +     ++  Y+ V+DG CK  M  EA  +  +M   G+ P+  T+  L  +
Sbjct: 151 LSYLKKMEEQNCNLDVTAYSAVVDGLCKDGMVFEALDLFSQMTGKGIQPNLFTYNCL--I 208

Query: 501 HG 502
           HG
Sbjct: 209 HG 210


>gi|451798817|gb|AGF69112.1| PPR [Raphanus sativus]
          Length = 479

 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 123/491 (25%), Positives = 227/491 (46%), Gaps = 56/491 (11%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C  S++  A   F  +   G  P +V++ TL+HG C    +  A  +F +M      PN
Sbjct: 25  FCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEALDLFHQMCK----PN 80

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +T++ L+ G+ R   V  A  L+    +RM E+  L  N   +  +VD +C+ G     
Sbjct: 81  VVTFTTLMNGLCREGRVVEAVALL----DRMVED-GLQPNQITYGTIVDGMCKMGDTVSA 135

Query: 124 FRIAEDMPQGKSVNEEFAC-GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
             +   M +   +  +      +ID L + GR+  A  +   M+ +G+ P +V+Y+ +++
Sbjct: 136 LNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMIN 195

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           G C  G    A +LL+E +     P   T+  L+  L  E DL  A+ +LQ M+S     
Sbjct: 196 GFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMIS----- 250

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
            + +C                             P+V+T NT+++G C  G++++AL++ 
Sbjct: 251 -SGVC-----------------------------PNVVTCNTLLDGLCDSGKLKDALEMF 280

Query: 303 NDMV----------AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIV 352
             M           A     PD  T+  +I GL+N G+  EA  L Y+ MP RG  P  V
Sbjct: 281 KAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEEL-YEEMPHRGIVPDTV 339

Query: 353 TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI 412
           TY++++ GL +  R++EA ++F+ M       +  T+  +I G C++  +D+    + ++
Sbjct: 340 TYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEM 399

Query: 413 VWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMK 472
                + +   Y  +I+G  + G I+ ++    E++ SGV P+ +    ++ G       
Sbjct: 400 GRRGIVANAITYITLIRGFRKVGNINGSLDIFQEMISSGVYPDTITIRNMLTGLWSKEEL 459

Query: 473 REAYQILREMR 483
           ++A  +L E++
Sbjct: 460 KKALAMLEELQ 470



 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 123/484 (25%), Positives = 221/484 (45%), Gaps = 59/484 (12%)

Query: 25  HVP-NVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERA 83
            +P ++ S+  LI  +C   ++  A   F ++   G  P  +T++ L+ G+     V  A
Sbjct: 10  QIPCDIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEA 69

Query: 84  NVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACG 143
                 L+ +M +      N   F  L++ LCREG V E   + + M +      +   G
Sbjct: 70  ----LDLFHQMCKP-----NVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYG 120

Query: 144 HMIDSLCRSGRNHGASRVVYVMRKRG-LTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQ 202
            ++D +C+ G    A  ++  M +   + P +V Y++I+ GL K G    A  L  E   
Sbjct: 121 TIVDGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQD 180

Query: 203 FGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTE 262
            G  P   TY  ++ G C      +A+++LQ ML +K                       
Sbjct: 181 KGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRK----------------------- 217

Query: 263 LLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTII 322
                         PDV+T + +IN   K G +  A  +L +M++   C P+ VT  T++
Sbjct: 218 ------------ISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVC-PNVVTCNTLL 264

Query: 323 FGLLNVGRIQEALNLLYQVMPQ-----------RGYSPGIVTYNAVLRGLFRLRRVEEAK 371
            GL + G++++AL + ++ M +            G  P + TYN ++ GL    +  EA+
Sbjct: 265 DGLCDSGKLKDALEM-FKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAE 323

Query: 372 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 431
           E++  M   G+V D+ TY+ +I+GLC+ ++LDEA + +D +   S   +   +  +I G 
Sbjct: 324 ELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGY 383

Query: 432 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 491
           C++G + + +    E+   G+  N + Y  +I G  K+     +  I +EM  +G+ PD 
Sbjct: 384 CKAGMVDDGLELFCEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQEMISSGVYPDT 443

Query: 492 VTWR 495
           +T R
Sbjct: 444 ITIR 447



 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 121/430 (28%), Positives = 210/430 (48%), Gaps = 27/430 (6%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   RV EA  LF  M      PNVV++TTL++G CR G +  A  + D M   G+ PN
Sbjct: 60  LCVEDRVSEALDLFHQMCK----PNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPN 115

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY  +V G+ +  D   A      L  +M+E   +  +   ++ ++D L ++G   + 
Sbjct: 116 QITYGTIVDGMCKMGDTVSA----LNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDA 171

Query: 124 FRIAEDMPQGKSVNEE---FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
             +  +M Q K +  +   ++C  MI+  C SG+   A R++  M  R ++P +V+++ +
Sbjct: 172 QNLFIEM-QDKGIFPDIVTYSC--MINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGL 228

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFML-SKK 239
           ++ L K G    A  LL+E I  G  P+  T   L++GLC    L+ A ++ + M  S  
Sbjct: 229 INALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMM 288

Query: 240 DVDRT----------RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGF 289
           D+D T          +  NI +  L       E   +   M      PD +T +++ING 
Sbjct: 289 DIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGL 348

Query: 290 CKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSP 349
           CK  R++EA ++ + M +  F +P+ VTF T+I G    G + + L L  + M +RG   
Sbjct: 349 CKQSRLDEATQMFDSMGSKSF-SPNIVTFNTLITGYCKAGMVDDGLELFCE-MGRRGIVA 406

Query: 350 GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFW 409
             +TY  ++RG  ++  +  + ++F  M+  GV  D+ T   ++ GL    +L +A    
Sbjct: 407 NAITYITLIRGFRKVGNINGSLDIFQEMISSGVYPDTITIRNMLTGLWSKEELKKALAML 466

Query: 410 DDIVWPSNIH 419
           +++    + H
Sbjct: 467 EELQMSMDHH 476



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 110/368 (29%), Positives = 187/368 (50%), Gaps = 24/368 (6%)

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
           ++  LC   R   A  + + M K    P++V++ ++++GLC+ G  + A  LL+  ++ G
Sbjct: 56  LLHGLCVEDRVSEALDLFHQMCK----PNVVTFTTLMNGLCREGRVVEAVALLDRMVEDG 111

Query: 205 YLPSEHTYKVLVEGLCGESDLEKA----RKVLQFMLSKKDVDRTRICNIYLRALCLIKNP 260
             P++ TY  +V+G+C   D   A    RK+ +    K DV    I +  +  L      
Sbjct: 112 LQPNQITYGTIVDGMCKMGDTVSALNLLRKMEELSHIKPDV---VIYSAIIDGLWKDGRH 168

Query: 261 TELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTT 320
           T+  N+ + M      PD++T + +INGFC  G+  EA ++L +M+  K  +PD VTF+ 
Sbjct: 169 TDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKI-SPDVVTFSG 227

Query: 321 IIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCM--- 377
           +I  L+  G +  A +LL Q M   G  P +VT N +L GL    ++++A E+F  M   
Sbjct: 228 LINALVKEGDLNSAQDLL-QEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKS 286

Query: 378 -LGI-------GVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIK 429
            + I       GV  D  TY I+I GL    +  EA+  ++++     + D   Y++MI 
Sbjct: 287 MMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMIN 346

Query: 430 GLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNP 489
           GLC+  ++ EA      +     +PNIV +N +I G CK  M  +  ++  EM + G+  
Sbjct: 347 GLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVA 406

Query: 490 DAVTWRIL 497
           +A+T+  L
Sbjct: 407 NAITYITL 414



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 88/300 (29%), Positives = 155/300 (51%), Gaps = 18/300 (6%)

Query: 210 HTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC-NIYLRALCLIKNPTELLNVLV 268
           +++ +L++  C  S L  A       L+K     T +  N  L  LC+    +E L+   
Sbjct: 16  YSFNILIKCFCSCSKLPFALSTFG-KLTKLGFHPTLVTFNTLLHGLCVEDRVSEALD--- 71

Query: 269 FMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNV 328
            +    C+P+V+T  T++NG C+ GR+ EA+ +L+ MV      P+ +T+ TI+ G+  +
Sbjct: 72  -LFHQMCKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGL-QPNQITYGTIVDGMCKM 129

Query: 329 GRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTT 388
           G    ALNLL ++       P +V Y+A++ GL++  R  +A+ +F  M   G+  D  T
Sbjct: 130 GDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVT 189

Query: 389 YAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELV 448
           Y+ +I+G C S +  EA+R   +++      D   ++ +I  L + G ++ A   L E++
Sbjct: 190 YSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMI 249

Query: 449 DSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK-----------NGLNPDAVTWRIL 497
            SGV PN+V  N ++DG C     ++A ++ + M+K           NG+ PD  T+ IL
Sbjct: 250 SSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNIL 309



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 102/417 (24%), Positives = 177/417 (42%), Gaps = 89/417 (21%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEM--------------- 45
           M+ LC   RV EA  L   M   G  PN ++Y T++ G C+ G+                
Sbjct: 88  MNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEELSH 147

Query: 46  ---DV------------------AYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERAN 84
              DV                  A  +F EM+  G+ P+ +TYS ++ G   +     A 
Sbjct: 148 IKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQ 207

Query: 85  VLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGH 144
            L+ ++  R      +S +   F+ L+++L +EG +N    + ++M           C  
Sbjct: 208 RLLQEMLVR-----KISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNT 262

Query: 145 MIDSLCRSGRNHGASRVVYVMRK-----------RGLTPSLVSYNSIVHGLCKHGGCMRA 193
           ++D LC SG+   A  +   M+K            G+ P + +YN ++ GL   G  + A
Sbjct: 263 LLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEA 322

Query: 194 YQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRA 253
            +L EE    G +P   TY  ++ GLC +S L++A ++   M SK               
Sbjct: 323 EELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSK--------------- 367

Query: 254 LCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAP 313
                                  P+++T NT+I G+CK G +++ L++  +M   +    
Sbjct: 368 --------------------SFSPNIVTFNTLITGYCKAGMVDDGLELFCEM-GRRGIVA 406

Query: 314 DAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEA 370
           +A+T+ T+I G   VG I  +L+ ++Q M   G  P  +T   +L GL+    +++A
Sbjct: 407 NAITYITLIRGFRKVGNINGSLD-IFQEMISSGVYPDTITIRNMLTGLWSKEELKKA 462


>gi|357499119|ref|XP_003619848.1| CCP [Medicago truncatula]
 gi|355494863|gb|AES76066.1| CCP [Medicago truncatula]
          Length = 556

 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 117/458 (25%), Positives = 225/458 (49%), Gaps = 11/458 (2%)

Query: 13  AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVR 72
           A  L   M  +G  P++ + +  I+ YC  GEM  A+ V   +   G  PN++T + +++
Sbjct: 103 AISLLKQMVFKGVTPSIFTLSIWINCYCHLGEMGFAFSVLGIVLKRGYQPNNITLTTVMK 162

Query: 73  GVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQ 132
           G+    +V++A       +      + + ++   +  L++ LC+ G   + F++ ++M +
Sbjct: 163 GLCINGEVQKA-----MDFHDNVAAQGMLLDEVCYGTLINGLCKIGRSIDAFQLLQEM-E 216

Query: 133 GKSVNEEFACGHMI-DSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCM 191
           G+ V       +MI DS C+      A  +   +   G+ P +++Y S++ G C+ G   
Sbjct: 217 GQVVKPNIVIYNMIIDSFCKDELTCKARDLYLKIVDMGIDPDILTYTSLIRGFCRTGQWG 276

Query: 192 RAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYL 251
              QL+ E +     P+ +T+ VL++  C +  + +A+ +   M+ +         N  +
Sbjct: 277 EVKQLMCEMVNKNINPNVYTFNVLIDAFCRKGKMIEAQGMFNLMVKRGQQPDIVTFNTLI 336

Query: 252 RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC 311
              CL  N  E   +   + +    PDV +   +I G+CK  RI+EA+ + N+M   K  
Sbjct: 337 SGHCLHGNVLEARKLFDTVFERGILPDVWSYTILIIGYCKCKRIDEAVSLFNEMRC-KNM 395

Query: 312 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK 371
             D V ++++I GL   GRI  A  L +  +   G  P ++TYN ++    +++ ++   
Sbjct: 396 VLDIVLYSSLIDGLCKSGRISYAWEL-FSTINNDGPPPNVITYNILIDAFCKIQDIDMGI 454

Query: 372 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 431
           E+F  M G G+     TY I+I+G C+S ++ EA      +   +   D+  Y ++  GL
Sbjct: 455 ELFKLMCGKGLTPTVLTYNILINGYCKSKRIREAMNLLSVMQSKNLAPDSITYNSLFDGL 514

Query: 432 CRSGKIHEAVHFLYELVDSGVTP-NIVCYNVVIDGACK 468
           C+SG+I +A   L++++  G  P ++  YNV++D  CK
Sbjct: 515 CKSGRISDAWE-LFKVMHVGGPPVDVATYNVLLDAFCK 551



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 121/494 (24%), Positives = 226/494 (45%), Gaps = 7/494 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           L   + + +A  LF  + +   +P+V+ + T+I    +     VA  +  +M   GV P+
Sbjct: 59  LSSFNGIDDAVTLFNHLINMQPLPSVIQFNTIIGSVVKMKHCPVAISLLKQMVFKGVTPS 118

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             T S+ +       ++  A  ++  + +R  +      NN     ++  LC  G V + 
Sbjct: 119 IFTLSIWINCYCHLGEMGFAFSVLGIVLKRGYQP-----NNITLTTVMKGLCINGEVQKA 173

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
               +++     + +E   G +I+ LC+ GR+  A +++  M  + + P++V YN I+  
Sbjct: 174 MDFHDNVAAQGMLLDEVCYGTLINGLCKIGRSIDAFQLLQEMEGQVVKPNIVIYNMIIDS 233

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK     +A  L  + +  G  P   TY  L+ G C      + ++++  M++K     
Sbjct: 234 FCKDELTCKARDLYLKIVDMGIDPDILTYTSLIRGFCRTGQWGEVKQLMCEMVNKNINPN 293

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               N+ + A C      E   +   M++   QPD++T NT+I+G C  G + EA K+  
Sbjct: 294 VYTFNVLIDAFCRKGKMIEAQGMFNLMVKRGQQPDIVTFNTLISGHCLHGNVLEARKLF- 352

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           D V  +   PD  ++T +I G     RI EA++ L+  M  +     IV Y++++ GL +
Sbjct: 353 DTVFERGILPDVWSYTILIIGYCKCKRIDEAVS-LFNEMRCKNMVLDIVLYSSLIDGLCK 411

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
             R+  A E+F+ +   G   +  TY I+ID  C+   +D     +  +           
Sbjct: 412 SGRISYAWELFSTINNDGPPPNVITYNILIDAFCKIQDIDMGIELFKLMCGKGLTPTVLT 471

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y  +I G C+S +I EA++ L  +    + P+ + YN + DG CK     +A+++ + M 
Sbjct: 472 YNILINGYCKSKRIREAMNLLSVMQSKNLAPDSITYNSLFDGLCKSGRISDAWELFKVMH 531

Query: 484 KNGLNPDAVTWRIL 497
             G   D  T+ +L
Sbjct: 532 VGGPPVDVATYNVL 545



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 108/403 (26%), Positives = 199/403 (49%), Gaps = 9/403 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M  LC    V +A     ++ ++G + + V Y TLI+G C+ G    A+++  EM    V
Sbjct: 161 MKGLCINGEVQKAMDFHDNVAAQGMLLDEVCYGTLINGLCKIGRSIDAFQLLQEMEGQVV 220

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN + Y++++    +     +A  L  K+ +   + + L+     + +L+   CR G  
Sbjct: 221 KPNIVIYNMIIDSFCKDELTCKARDLYLKIVDMGIDPDILT-----YTSLIRGFCRTGQW 275

Query: 121 NEVFRIAEDMPQGKSVNEE-FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
            EV ++  +M   K++N   +    +ID+ CR G+   A  +  +M KRG  P +V++N+
Sbjct: 276 GEVKQLMCEMVN-KNINPNVYTFNVLIDAFCRKGKMIEAQGMFNLMVKRGQQPDIVTFNT 334

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++ G C HG  + A +L +   + G LP   +Y +L+ G C    +++A  +   M  K 
Sbjct: 335 LISGHCLHGNVLEARKLFDTVFERGILPDVWSYTILIIGYCKCKRIDEAVSLFNEMRCKN 394

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
            V    + +  +  LC     +    +   +      P+VIT N +I+ FCK+  I+  +
Sbjct: 395 MVLDIVLYSSLIDGLCKSGRISYAWELFSTINNDGPPPNVITYNILIDAFCKIQDIDMGI 454

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           ++   ++ GK   P  +T+  +I G     RI+EA+NLL  VM  +  +P  +TYN++  
Sbjct: 455 ELFK-LMCGKGLTPTVLTYNILINGYCKSKRIREAMNLL-SVMQSKNLAPDSITYNSLFD 512

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQL 402
           GL +  R+ +A E+F  M   G   D  TY +++D  C++  +
Sbjct: 513 GLCKSGRISDAWELFKVMHVGGPPVDVATYNVLLDAFCKAQDV 555



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 74/245 (30%), Positives = 119/245 (48%), Gaps = 5/245 (2%)

Query: 262 ELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTI 321
            LL  +VF   T   P + TL+  IN +C +G +  A  VL  +V  +   P+ +T TT+
Sbjct: 105 SLLKQMVFKGVT---PSIFTLSIWINCYCHLGEMGFAFSVLG-IVLKRGYQPNNITLTTV 160

Query: 322 IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG 381
           + GL   G +Q+A++    V  Q G     V Y  ++ GL ++ R  +A ++   M G  
Sbjct: 161 MKGLCINGEVQKAMDFHDNVAAQ-GMLLDEVCYGTLINGLCKIGRSIDAFQLLQEMEGQV 219

Query: 382 VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAV 441
           V  +   Y ++ID  C+     +A+  +  IV      D   Y ++I+G CR+G+  E  
Sbjct: 220 VKPNIVIYNMIIDSFCKDELTCKARDLYLKIVDMGIDPDILTYTSLIRGFCRTGQWGEVK 279

Query: 442 HFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLH 501
             + E+V+  + PN+  +NV+ID  C+     EA  +   M K G  PD VT+  L   H
Sbjct: 280 QLMCEMVNKNINPNVYTFNVLIDAFCRKGKMIEAQGMFNLMVKRGQQPDIVTFNTLISGH 339

Query: 502 GNRGN 506
              GN
Sbjct: 340 CLHGN 344


>gi|357499659|ref|XP_003620118.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
 gi|355495133|gb|AES76336.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
          Length = 841

 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 113/420 (26%), Positives = 194/420 (46%), Gaps = 37/420 (8%)

Query: 103 NNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVV 162
           +       +   C +G +++     + +       ++ + G +I+ LC+ G    A  ++
Sbjct: 262 DTITLTTFIKGFCLKGQIHQALHFHDKVIAMGFHLDQVSYGTLINGLCKVGETKAALELL 321

Query: 163 YVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGE 222
                + + P +V YN+I+ G+CK      A+ L  E +     P   TY  L+ G C  
Sbjct: 322 RRNDGKLVQPDVVMYNTIIDGMCKDKHVNDAFDLYSEKVSKRIFPDVFTYNALISGFCIV 381

Query: 223 SDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITL 282
             L+ A  +   M SK  +      +I +   C   N  E  NVL  M++   +PDV+T 
Sbjct: 382 GKLKDAIDLFNKMTSKNIIPDVYTFSILVDGFCKDGNIKEAKNVLAMMMKQSIKPDVVTY 441

Query: 283 -----------------------------------NTVINGFCKMGRIEEALKVLNDMVA 307
                                              N +INGFCK+  ++EA+K+  +M  
Sbjct: 442 SSLMDGYCLVNEVNKAESIFNTMSHRGVTANVQSYNIMINGFCKIKMVDEAMKLFKEM-H 500

Query: 308 GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRV 367
            K   PD +T++++I GL   GRI  AL L+ + M  RG  P I+TYN++L  L +   V
Sbjct: 501 HKQIFPDVITYSSLIDGLCKSGRISYALELVDE-MHYRGQQPDIITYNSILDALCKKHHV 559

Query: 368 EEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAM 427
           ++A  +   + G G+  D  TY I++ GLC+S +L++A++ ++D++      D Y Y  M
Sbjct: 560 DKAITLLTKLKGQGIRPDMNTYTILVKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTVM 619

Query: 428 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
           I+G C  G   EA+  L ++ ++G  P+   Y ++I    +      A ++LREM   GL
Sbjct: 620 IQGFCDKGLFDEALALLSKMEENGCIPDAKTYEIIILSLFEKDENDMAEKLLREMIMRGL 679



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 96/333 (28%), Positives = 175/333 (52%), Gaps = 2/333 (0%)

Query: 167 KRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLE 226
           K G  P  ++  + + G C  G   +A    ++ I  G+   + +Y  L+ GLC   + +
Sbjct: 256 KNGYEPDTITLTTFIKGFCLKGQIHQALHFHDKVIAMGFHLDQVSYGTLINGLCKVGETK 315

Query: 227 KARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVI 286
            A ++L+    K       + N  +  +C  K+  +  ++    +  +  PDV T N +I
Sbjct: 316 AALELLRRNDGKLVQPDVVMYNTIIDGMCKDKHVNDAFDLYSEKVSKRIFPDVFTYNALI 375

Query: 287 NGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
           +GFC +G++++A+ + N M + K   PD  TF+ ++ G    G I+EA N+L  +M Q  
Sbjct: 376 SGFCIVGKLKDAIDLFNKMTS-KNIIPDVYTFSILVDGFCKDGNIKEAKNVLAMMMKQ-S 433

Query: 347 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
             P +VTY++++ G   +  V +A+ +FN M   GV A+  +Y I+I+G C+   +DEA 
Sbjct: 434 IKPDVVTYSSLMDGYCLVNEVNKAESIFNTMSHRGVTANVQSYNIMINGFCKIKMVDEAM 493

Query: 407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466
           + + ++       D   Y+++I GLC+SG+I  A+  + E+   G  P+I+ YN ++D  
Sbjct: 494 KLFKEMHHKQIFPDVITYSSLIDGLCKSGRISYALELVDEMHYRGQQPDIITYNSILDAL 553

Query: 467 CKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
           CK     +A  +L +++  G+ PD  T+ IL K
Sbjct: 554 CKKHHVDKAITLLTKLKGQGIRPDMNTYTILVK 586



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 107/430 (24%), Positives = 204/430 (47%), Gaps = 9/430 (2%)

Query: 24  GHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERA 83
           G+ P+ ++ TT I G+C  G++  A    D++   G   + ++Y  L+ G+ +  + + A
Sbjct: 258 GYEPDTITLTTFIKGFCLKGQIHQALHFHDKVIAMGFHLDQVSYGTLINGLCKVGETKAA 317

Query: 84  NVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACG 143
             L+     R  + + +  +   +  ++D +C++ +VN+ F +  +    +   + F   
Sbjct: 318 LELL-----RRNDGKLVQPDVVMYNTIIDGMCKDKHVNDAFDLYSEKVSKRIFPDVFTYN 372

Query: 144 HMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQF 203
            +I   C  G+   A  +   M  + + P + +++ +V G CK G    A  +L   ++ 
Sbjct: 373 ALISGFCIVGKLKDAIDLFNKMTSKNIIPDVYTFSILVDGFCKDGNIKEAKNVLAMMMKQ 432

Query: 204 GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTEL 263
              P   TY  L++G C  +++ KA  +   M  +      +  NI +   C IK   E 
Sbjct: 433 SIKPDVVTYSSLMDGYCLVNEVNKAESIFNTMSHRGVTANVQSYNIMINGFCKIKMVDEA 492

Query: 264 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM-VAGKFCAPDAVTFTTII 322
           + +   M   Q  PDVIT +++I+G CK GRI  AL+++++M   G+   PD +T+ +I+
Sbjct: 493 MKLFKEMHHKQIFPDVITYSSLIDGLCKSGRISYALELVDEMHYRGQ--QPDIITYNSIL 550

Query: 323 FGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGV 382
             L     + +A+ LL ++  Q G  P + TY  +++GL +  ++E+A++VF  +L  G 
Sbjct: 551 DALCKKHHVDKAITLLTKLKGQ-GIRPDMNTYTILVKGLCQSGKLEDARKVFEDLLVKGY 609

Query: 383 VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVH 442
             D   Y ++I G C+    DEA      +     I D   Y  +I  L    +   A  
Sbjct: 610 NLDVYAYTVMIQGFCDKGLFDEALALLSKMEENGCIPDAKTYEIIILSLFEKDENDMAEK 669

Query: 443 FLYELVDSGV 452
            L E++  G+
Sbjct: 670 LLREMIMRGL 679



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 102/435 (23%), Positives = 197/435 (45%), Gaps = 72/435 (16%)

Query: 120 VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           V+  +R+    P    +  EF  G ++ SL +S   H    +   M  +G+  + ++ N 
Sbjct: 95  VSLFYRLLRQNPTPPDI--EF--GKILGSLVKSKHYHTVLSLSQKMEFKGIKLNFLNCNI 150

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGE-SDLEKARKVLQFML-- 236
           +++  C+ G    A+ +L  G+          Y + +   C +  +LE  +++   +L  
Sbjct: 151 LINSFCQLGLIPFAFSVLTRGV----------YWIEILKDCFDRKNLEDFKRLCWIVLIL 200

Query: 237 ------SKKDVDRTRICNI-------------YLRALCLIKN-PTELLNVLVFMLQTQCQ 276
                   KD  ++R+ N+             +++  CL+K+    +      +L+   +
Sbjct: 201 WDFKRLFLKDFLQSRLFNVLHSFKILIEYHKTFIKQKCLLKSFEISIEYTPPKILKNGYE 260

Query: 277 PDVITLNTVINGFCKMGRIEEALKVLNDMVA----------------------------- 307
           PD ITL T I GFC  G+I +AL   + ++A                             
Sbjct: 261 PDTITLTTFIKGFCLKGQIHQALHFHDKVIAMGFHLDQVSYGTLINGLCKVGETKAALEL 320

Query: 308 -----GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
                GK   PD V + TII G+     + +A +L  + + +R + P + TYNA++ G  
Sbjct: 321 LRRNDGKLVQPDVVMYNTIIDGMCKDKHVNDAFDLYSEKVSKRIF-PDVFTYNALISGFC 379

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
            + ++++A ++FN M    ++ D  T++I++DG C+   + EAK     ++  S   D  
Sbjct: 380 IVGKLKDAIDLFNKMTSKNIIPDVYTFSILVDGFCKDGNIKEAKNVLAMMMKQSIKPDVV 439

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
            Y++++ G C   ++++A      +   GVT N+  YN++I+G CK+ M  EA ++ +EM
Sbjct: 440 TYSSLMDGYCLVNEVNKAESIFNTMSHRGVTANVQSYNIMINGFCKIKMVDEAMKLFKEM 499

Query: 483 RKNGLNPDAVTWRIL 497
               + PD +T+  L
Sbjct: 500 HHKQIFPDVITYSSL 514



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 99/376 (26%), Positives = 161/376 (42%), Gaps = 67/376 (17%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D +C    V +A  L+ +  S+   P+V +Y  LI G+C  G++  A  +F++M    +
Sbjct: 340 IDGMCKDKHVNDAFDLYSEKVSKRIFPDVFTYNALISGFCIVGKLKDAIDLFNKMTSKNI 399

Query: 61  LPNSLTYSVLVRGVLRTRDVERA-NVLMFKLWERMKEE---------------------- 97
           +P+  T+S+LV G  +  +++ A NVL   + + +K +                      
Sbjct: 400 IPDVYTFSILVDGFCKDGNIKEAKNVLAMMMKQSIKPDVVTYSSLMDGYCLVNEVNKAES 459

Query: 98  -------EDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC 150
                    ++ N  ++  +++  C+   V+E  ++ ++M   +   +      +ID LC
Sbjct: 460 IFNTMSHRGVTANVQSYNIMINGFCKIKMVDEAMKLFKEMHHKQIFPDVITYSSLIDGLC 519

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
           +SGR   A  +V  M  RG  P +++YNSI+  LCK     +A  LL +    G  P  +
Sbjct: 520 KSGRISYALELVDEMHYRGQQPDIITYNSILDALCKKHHVDKAITLLTKLKGQGIRPDMN 579

Query: 211 TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM 270
           TY +LV+GLC    LE ARKV + +L K                                
Sbjct: 580 TYTILVKGLCQSGKLEDARKVFEDLLVK-------------------------------- 607

Query: 271 LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR 330
                  DV     +I GFC  G  +EAL +L+ M     C PDA T+  II  L     
Sbjct: 608 ---GYNLDVYAYTVMIQGFCDKGLFDEALALLSKMEENG-CIPDAKTYEIIILSLFEKDE 663

Query: 331 IQEALNLLYQVMPQRG 346
              A  LL + M  RG
Sbjct: 664 NDMAEKLLRE-MIMRG 678


>gi|125539937|gb|EAY86332.1| hypothetical protein OsI_07707 [Oryza sativa Indica Group]
          Length = 584

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 116/385 (30%), Positives = 187/385 (48%), Gaps = 14/385 (3%)

Query: 113 SLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTP 172
           SL R G ++E  R+     +     +   C  +I  L  SGR   A RV+         P
Sbjct: 76  SLVRRGELDEALRLVGSARR----PDAGTCAALIKKLSASGRTAEARRVLA-----ACGP 126

Query: 173 SLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVL 232
            +++YN+++ G C  G    A +   E          +T   L+ GLCG      A  VL
Sbjct: 127 DVMAYNAMMAGYCGAGQVDAARRWCAE---RAVERDAYTCDTLIRGLCGRGRTANALAVL 183

Query: 233 QFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKM 292
             ML ++ V       I L A C      + + +L  M    C PD++T N V+NG C+ 
Sbjct: 184 DEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQE 243

Query: 293 GRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIV 352
           GR+++A++ L ++ +   C P+ V++  ++ GL    R ++A  L+ + M Q+G  P +V
Sbjct: 244 GRVDDAIEFLKNLPS-YGCEPNTVSYNIVLKGLCTAERWEDAEELMGE-MGQKGCPPNVV 301

Query: 353 TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI 412
           T+N ++  L R   VE A EV   +   G   +S +Y  ++   C+  ++D+A  F D +
Sbjct: 302 TFNMLISFLCRKGLVEPALEVLEQIPKYGCSPNSLSYNPLLHAFCKQKKMDKAMAFLDLM 361

Query: 413 VWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMK 472
           V      D   Y  ++  LCRSG++  AV  L++L D G  P ++ YN VIDG  K    
Sbjct: 362 VSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKT 421

Query: 473 REAYQILREMRKNGLNPDAVTWRIL 497
           +EA ++L EM   GL PD +T+  +
Sbjct: 422 KEALELLNEMVSKGLQPDIITYSTI 446



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 123/487 (25%), Positives = 238/487 (48%), Gaps = 20/487 (4%)

Query: 2   DQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVL 61
           D+L  L R GE  +    + S    P+  +   LI     +G    A +V   +  CG  
Sbjct: 72  DRLRSLVRRGELDEALRLVGS-ARRPDAGTCAALIKKLSASGRTAEARRV---LAACG-- 125

Query: 62  PNSLTYSVLVRGVLRTRDVERANVLMFKLW--ERMKEEEDLSVNNAAFANLVDSLCREGY 119
           P+ + Y+ ++ G      V+ A     + W  ER  E +  + +      L+  LC  G 
Sbjct: 126 PDVMAYNAMMAGYCGAGQVDAA-----RRWCAERAVERDAYTCDT-----LIRGLCGRGR 175

Query: 120 VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
                 + ++M + + V +      ++++ C+      A +++  MR +G TP +V+YN 
Sbjct: 176 TANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNV 235

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           +V+G+C+ G    A + L+    +G  P+  +Y ++++GLC     E A +++  M  K 
Sbjct: 236 VVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKG 295

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                   N+ +  LC        L VL  + +  C P+ ++ N +++ FCK  ++++A+
Sbjct: 296 CPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCSPNSLSYNPLLHAFCKQKKMDKAM 355

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
             L+ MV+ + C PD V++ T++  L   G +  A+ LL+Q +  +G +P +++YN V+ 
Sbjct: 356 AFLDLMVS-RGCYPDIVSYNTLLTALCRSGEVDVAVELLHQ-LKDKGCAPVLISYNTVID 413

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
           GL +  + +EA E+ N M+  G+  D  TY+ +  GLC  +++++A R +  +       
Sbjct: 414 GLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRP 473

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           +  +Y A+I GLC+  + H A+     ++ +G  PN   Y ++I+G     + +EA  +L
Sbjct: 474 NTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLL 533

Query: 480 REMRKNG 486
            E+   G
Sbjct: 534 DELCSRG 540



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 127/458 (27%), Positives = 215/458 (46%), Gaps = 21/458 (4%)

Query: 41  RTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRT-RDVERANVLMFKLWERMKEEED 99
           R GE+D A ++    R     P++ T + L++ +  + R  E   VL     + M     
Sbjct: 79  RRGELDEALRLVGSARR----PDAGTCAALIKKLSASGRTAEARRVLAACGPDVM----- 129

Query: 100 LSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGAS 159
                 A+  ++   C  G V+   R   +    +   + + C  +I  LC  GR   A 
Sbjct: 130 ------AYNAMMAGYCGAGQVDAARRWCAERAVER---DAYTCDTLIRGLCGRGRTANAL 180

Query: 160 RVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGL 219
            V+  M +R   P +V+Y  ++   CK  G  +A +LL+E    G  P   TY V+V G+
Sbjct: 181 AVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGI 240

Query: 220 CGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDV 279
           C E  ++ A + L+ + S      T   NI L+ LC  +   +   ++  M Q  C P+V
Sbjct: 241 CQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNV 300

Query: 280 ITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLY 339
           +T N +I+  C+ G +E AL+VL + +    C+P+++++  ++       ++ +A+  L 
Sbjct: 301 VTFNMLISFLCRKGLVEPALEVL-EQIPKYGCSPNSLSYNPLLHAFCKQKKMDKAMAFL- 358

Query: 340 QVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCES 399
            +M  RG  P IV+YN +L  L R   V+ A E+ + +   G      +Y  VIDGL ++
Sbjct: 359 DLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKA 418

Query: 400 NQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCY 459
            +  EA    +++V      D   Y+ +  GLCR  +I +A+    ++ D G+ PN V Y
Sbjct: 419 GKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLY 478

Query: 460 NVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           N +I G CK      A  +   M  NG  P+  T+ IL
Sbjct: 479 NAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTIL 516



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 90/375 (24%), Positives = 168/375 (44%), Gaps = 42/375 (11%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C  S   +A KL  +M+ +G  P++V+Y  +++G C+ G +D A +    +   G 
Sbjct: 202 LEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGC 261

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN+++Y+++++G+      E A  LM ++ ++         N   F  L+  LCR+G V
Sbjct: 262 EPNTVSYNIVLKGLCTAERWEDAEELMGEMGQK-----GCPPNVVTFNMLISFLCRKGLV 316

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                + E +P+        +   ++ + C+  +   A   + +M  RG  P +VSYN++
Sbjct: 317 EPALEVLEQIPKYGCSPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTL 376

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +  LC+ G    A +LL +    G  P   +Y  +++GL      ++A ++L  M+SK  
Sbjct: 377 LTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKG- 435

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                              QPD+IT +T+  G C+  RIE+A++
Sbjct: 436 ----------------------------------LQPDIITYSTIAAGLCREDRIEDAIR 461

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
                V      P+ V +  II GL        A++ L+  M   G  P   TY  ++ G
Sbjct: 462 AFGK-VQDMGIRPNTVLYNAIILGLCKRRETHSAID-LFAYMIGNGCMPNESTYTILIEG 519

Query: 361 LFRLRRVEEAKEVFN 375
           L     ++EA+++ +
Sbjct: 520 LAYEGLIKEARDLLD 534



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 99/214 (46%), Gaps = 14/214 (6%)

Query: 286 INGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQR 345
           +    + G ++EAL+++     G    PDA T   +I  L   GR  EA  +L       
Sbjct: 74  LRSLVRRGELDEALRLV-----GSARRPDAGTCAALIKKLSASGRTAEARRVLAAC---- 124

Query: 346 GYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA 405
              P ++ YNA++ G     +V+ A+          V  D+ T   +I GLC   +   A
Sbjct: 125 --GPDVMAYNAMMAGYCGAGQVDAARRWCA---ERAVERDAYTCDTLIRGLCGRGRTANA 179

Query: 406 KRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDG 465
               D+++    + D   Y  +++  C+     +A+  L E+ D G TP+IV YNVV++G
Sbjct: 180 LAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNG 239

Query: 466 ACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
            C+     +A + L+ +   G  P+ V++ I+ K
Sbjct: 240 ICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLK 273



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 47/93 (50%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R+ +A + F  ++  G  PN V Y  +I G C+  E   A  +F  M   G +PN
Sbjct: 450 LCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPN 509

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKE 96
             TY++L+ G+     ++ A  L+ +L  R +E
Sbjct: 510 ESTYTILIEGLAYEGLIKEARDLLDELCSRGEE 542


>gi|451798815|gb|AGF69111.1| PPR [Raphanus sativus]
          Length = 479

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 123/491 (25%), Positives = 226/491 (46%), Gaps = 56/491 (11%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C  S++  A   F  +   G  P +V++ TL+HG C    +  A  +F +M      PN
Sbjct: 25  FCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEALDLFHQMCK----PN 80

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +T++ L+ G+ R   V  A  L+    +RM E+  L  N   +  +VD +C+ G     
Sbjct: 81  VVTFTTLMNGLCREGRVVEAVALL----DRMVED-GLQPNQITYGTIVDGMCKMGDTVSA 135

Query: 124 FRIAEDMPQGKSVNEEFAC-GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
             +   M +   +  +      +ID L + GR+  A  +   M+ +G+ P +V+Y+ +++
Sbjct: 136 LNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMIN 195

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           G C  G    A +LL+E +     P   T+  L+  L  E DL  A+ +LQ M+S     
Sbjct: 196 GFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMIS----- 250

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
            + +C                             P+V+T NT+++G C  G++++AL++ 
Sbjct: 251 -SGVC-----------------------------PNVVTCNTLLDGLCDSGKLKDALEMF 280

Query: 303 NDMV----------AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIV 352
             M           A     PD  T+  +I GL+N G+  EA  L Y+ MP RG  P  V
Sbjct: 281 KAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEEL-YEEMPHRGIVPDTV 339

Query: 353 TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI 412
           TY++++ GL +  R++EA ++F+ M       +  T+  +I G C++  +D+    + ++
Sbjct: 340 TYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEM 399

Query: 413 VWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMK 472
                + +   Y  +I+G  + G I+ ++    E++ SGV P+ +    ++ G       
Sbjct: 400 GRRGIVANAITYITLIRGFRKVGNINGSLDIFQEMISSGVYPDTITIRNMLTGLWSKEEL 459

Query: 473 REAYQILREMR 483
           + A  +L E++
Sbjct: 460 KRALAMLEELQ 470



 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 123/484 (25%), Positives = 221/484 (45%), Gaps = 59/484 (12%)

Query: 25  HVP-NVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERA 83
            +P ++ S+  LI  +C   ++  A   F ++   G  P  +T++ L+ G+     V  A
Sbjct: 10  QIPCDIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEA 69

Query: 84  NVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACG 143
                 L+ +M +      N   F  L++ LCREG V E   + + M +      +   G
Sbjct: 70  ----LDLFHQMCKP-----NVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYG 120

Query: 144 HMIDSLCRSGRNHGASRVVYVMRKRG-LTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQ 202
            ++D +C+ G    A  ++  M +   + P +V Y++I+ GL K G    A  L  E   
Sbjct: 121 TIVDGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQD 180

Query: 203 FGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTE 262
            G  P   TY  ++ G C      +A+++LQ ML +K                       
Sbjct: 181 KGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRK----------------------- 217

Query: 263 LLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTII 322
                         PDV+T + +IN   K G +  A  +L +M++   C P+ VT  T++
Sbjct: 218 ------------ISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVC-PNVVTCNTLL 264

Query: 323 FGLLNVGRIQEALNLLYQVMPQ-----------RGYSPGIVTYNAVLRGLFRLRRVEEAK 371
            GL + G++++AL + ++ M +            G  P + TYN ++ GL    +  EA+
Sbjct: 265 DGLCDSGKLKDALEM-FKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAE 323

Query: 372 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 431
           E++  M   G+V D+ TY+ +I+GLC+ ++LDEA + +D +   S   +   +  +I G 
Sbjct: 324 ELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGY 383

Query: 432 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 491
           C++G + + +    E+   G+  N + Y  +I G  K+     +  I +EM  +G+ PD 
Sbjct: 384 CKAGMVDDGLELFCEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQEMISSGVYPDT 443

Query: 492 VTWR 495
           +T R
Sbjct: 444 ITIR 447



 Score =  168 bits (426), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 121/430 (28%), Positives = 209/430 (48%), Gaps = 27/430 (6%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   RV EA  LF  M      PNVV++TTL++G CR G +  A  + D M   G+ PN
Sbjct: 60  LCVEDRVSEALDLFHQMCK----PNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPN 115

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY  +V G+ +  D   A      L  +M+E   +  +   ++ ++D L ++G   + 
Sbjct: 116 QITYGTIVDGMCKMGDTVSA----LNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDA 171

Query: 124 FRIAEDMPQGKSVNEE---FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
             +  +M Q K +  +   ++C  MI+  C SG+   A R++  M  R ++P +V+++ +
Sbjct: 172 QNLFIEM-QDKGIFPDIVTYSC--MINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGL 228

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFML-SKK 239
           ++ L K G    A  LL+E I  G  P+  T   L++GLC    L+ A ++ + M  S  
Sbjct: 229 INALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMM 288

Query: 240 DVDRT----------RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGF 289
           D+D T          +  NI +  L       E   +   M      PD +T +++ING 
Sbjct: 289 DIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGL 348

Query: 290 CKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSP 349
           CK  R++EA ++ + M +  F +P+ VTF T+I G    G + + L L  + M +RG   
Sbjct: 349 CKQSRLDEATQMFDSMGSKSF-SPNIVTFNTLITGYCKAGMVDDGLELFCE-MGRRGIVA 406

Query: 350 GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFW 409
             +TY  ++RG  ++  +  + ++F  M+  GV  D+ T   ++ GL    +L  A    
Sbjct: 407 NAITYITLIRGFRKVGNINGSLDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRALAML 466

Query: 410 DDIVWPSNIH 419
           +++    + H
Sbjct: 467 EELQMSMDHH 476



 Score =  164 bits (415), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 110/368 (29%), Positives = 187/368 (50%), Gaps = 24/368 (6%)

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
           ++  LC   R   A  + + M K    P++V++ ++++GLC+ G  + A  LL+  ++ G
Sbjct: 56  LLHGLCVEDRVSEALDLFHQMCK----PNVVTFTTLMNGLCREGRVVEAVALLDRMVEDG 111

Query: 205 YLPSEHTYKVLVEGLCGESDLEKA----RKVLQFMLSKKDVDRTRICNIYLRALCLIKNP 260
             P++ TY  +V+G+C   D   A    RK+ +    K DV    I +  +  L      
Sbjct: 112 LQPNQITYGTIVDGMCKMGDTVSALNLLRKMEELSHIKPDV---VIYSAIIDGLWKDGRH 168

Query: 261 TELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTT 320
           T+  N+ + M      PD++T + +INGFC  G+  EA ++L +M+  K  +PD VTF+ 
Sbjct: 169 TDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKI-SPDVVTFSG 227

Query: 321 IIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCM--- 377
           +I  L+  G +  A +LL Q M   G  P +VT N +L GL    ++++A E+F  M   
Sbjct: 228 LINALVKEGDLNSAQDLL-QEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKS 286

Query: 378 -LGI-------GVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIK 429
            + I       GV  D  TY I+I GL    +  EA+  ++++     + D   Y++MI 
Sbjct: 287 MMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMIN 346

Query: 430 GLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNP 489
           GLC+  ++ EA      +     +PNIV +N +I G CK  M  +  ++  EM + G+  
Sbjct: 347 GLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVA 406

Query: 490 DAVTWRIL 497
           +A+T+  L
Sbjct: 407 NAITYITL 414



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 88/300 (29%), Positives = 155/300 (51%), Gaps = 18/300 (6%)

Query: 210 HTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC-NIYLRALCLIKNPTELLNVLV 268
           +++ +L++  C  S L  A       L+K     T +  N  L  LC+    +E L+   
Sbjct: 16  YSFNILIKCFCSCSKLPFALSTFG-KLTKLGFHPTLVTFNTLLHGLCVEDRVSEALD--- 71

Query: 269 FMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNV 328
            +    C+P+V+T  T++NG C+ GR+ EA+ +L+ MV      P+ +T+ TI+ G+  +
Sbjct: 72  -LFHQMCKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGL-QPNQITYGTIVDGMCKM 129

Query: 329 GRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTT 388
           G    ALNLL ++       P +V Y+A++ GL++  R  +A+ +F  M   G+  D  T
Sbjct: 130 GDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVT 189

Query: 389 YAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELV 448
           Y+ +I+G C S +  EA+R   +++      D   ++ +I  L + G ++ A   L E++
Sbjct: 190 YSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMI 249

Query: 449 DSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK-----------NGLNPDAVTWRIL 497
            SGV PN+V  N ++DG C     ++A ++ + M+K           NG+ PD  T+ IL
Sbjct: 250 SSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNIL 309



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 102/417 (24%), Positives = 176/417 (42%), Gaps = 89/417 (21%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEM--------------- 45
           M+ LC   RV EA  L   M   G  PN ++Y T++ G C+ G+                
Sbjct: 88  MNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEELSH 147

Query: 46  ---DV------------------AYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERAN 84
              DV                  A  +F EM+  G+ P+ +TYS ++ G   +     A 
Sbjct: 148 IKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQ 207

Query: 85  VLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGH 144
            L+ ++  R      +S +   F+ L+++L +EG +N    + ++M           C  
Sbjct: 208 RLLQEMLVR-----KISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNT 262

Query: 145 MIDSLCRSGRNHGASRVVYVMRK-----------RGLTPSLVSYNSIVHGLCKHGGCMRA 193
           ++D LC SG+   A  +   M+K            G+ P + +YN ++ GL   G  + A
Sbjct: 263 LLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEA 322

Query: 194 YQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRA 253
            +L EE    G +P   TY  ++ GLC +S L++A ++   M SK               
Sbjct: 323 EELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKS-------------- 368

Query: 254 LCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAP 313
                                  P+++T NT+I G+CK G +++ L++  +M   +    
Sbjct: 369 ---------------------FSPNIVTFNTLITGYCKAGMVDDGLELFCEM-GRRGIVA 406

Query: 314 DAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEA 370
           +A+T+ T+I G   VG I  +L+ ++Q M   G  P  +T   +L GL+    ++ A
Sbjct: 407 NAITYITLIRGFRKVGNINGSLD-IFQEMISSGVYPDTITIRNMLTGLWSKEELKRA 462


>gi|297836911|ref|XP_002886337.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
 gi|297332178|gb|EFH62596.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
          Length = 1059

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 126/451 (27%), Positives = 217/451 (48%), Gaps = 8/451 (1%)

Query: 38  GYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEE 97
           G+  +   + A  +F EM     LP+ + ++ L+  +   R  E   V+ F    +  E 
Sbjct: 39  GFLHSIRFEDALDLFLEMVQSQPLPSVVDFTRLLTAIANLRRYE--TVIYF---SQQMEL 93

Query: 98  EDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHG 157
             +S +  +F  L+   CR   ++    I   M +          G ++   C   R H 
Sbjct: 94  FGISHDLYSFTILIHCFCRCSRLSLALSILGKMMKLGYDPSIVTFGSLLHGFCLRNRIHD 153

Query: 158 ASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH-TYKVLV 216
           A  +V  M K G  P++V YN+++  LCK+G    A +LL E  + G L ++  TY  L+
Sbjct: 154 AFSLVASMVKSGYEPNVVVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTYNTLL 213

Query: 217 EGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQ 276
            GLC   +  +A ++L+ M  ++           + A     N  E   +   MLQ+   
Sbjct: 214 TGLCYSGEWRQAARILRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIG 273

Query: 277 PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALN 336
           P+ +T N++ING C  GR+  A K   D++A K C P+ VT+ T+I G     R+++ + 
Sbjct: 274 PNTVTYNSLINGLCMHGRLYHAKKTF-DLMASKGCFPNVVTYNTLINGFCKSRRVEDGMK 332

Query: 337 LLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 396
           L +Q M + G      TYN ++ G  ++ ++  AK++F+ M+  GV  D  T+ I++ GL
Sbjct: 333 L-FQRMYREGLVGDTFTYNTLIHGYCQVGKLRVAKDIFSWMVSCGVTPDIITHCILLHGL 391

Query: 397 CESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNI 456
           C + ++  A   ++D+           Y  MI GLC++ K+ EA      L   GV P+ 
Sbjct: 392 CVNGEIGSAMVKFNDMRSGEKYLGIVAYNIMIHGLCKADKVEEAWELFCRLPVEGVKPDA 451

Query: 457 VCYNVVIDGACKLSMKREAYQILREMRKNGL 487
             Y ++I G CK   +REA ++ R M+++G+
Sbjct: 452 RTYTIMILGLCKNGPRREADELFRRMKEDGI 482



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 120/491 (24%), Positives = 228/491 (46%), Gaps = 45/491 (9%)

Query: 9    RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
            +  +A  LF +M     +P++V +T ++    +  + D+   +F +M + G+  +  +++
Sbjct: 595  KFDDAFGLFCEMLQSRPIPSIVDFTRVLTAIAKMNKFDIVIYLFHKMENLGISHDLYSFT 654

Query: 69   VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
            +L+    R      A  L+ K+                         + G+   +  +  
Sbjct: 655  ILIHCFCRCSRFSLALALLGKMM------------------------KLGFQPSIVTL-- 688

Query: 129  DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
                          G +++  C+  R   A  +V  M + GL P++V YN++++GLCK+ 
Sbjct: 689  --------------GSLLNGFCQGNRFQEAVSLVDSMAELGLEPNVVIYNTVINGLCKNR 734

Query: 189  GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
                A ++     + G +    TY  L+ GLC       A ++L+ M+ +K         
Sbjct: 735  DLNNALEIFYGMEKKGIVADAVTYNTLISGLCNSGRWTDAARLLRDMVKRKIDPNVIFFT 794

Query: 249  IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 308
              +       N  E  N+   M++    P+++T N++INGFC  GR+ +A K + D++  
Sbjct: 795  ALIDTFVKEGNLLEAKNLYKEMIRRSVHPNILTYNSLINGFCIQGRLGDA-KHMFDLMVS 853

Query: 309  KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE 368
            K C PD VT+ T+I G     R+++ + L  + M  +G      TYN ++ G  +  ++ 
Sbjct: 854  KGCFPDVVTYNTLITGFCKSKRVEDGMKLFCE-MTHQGLVGDAFTYNTLIHGYCQAGKLN 912

Query: 369  EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI 428
             A++VFN M+  GV  D  TY I++D LC + ++++A    +D+       D   Y  +I
Sbjct: 913  VAQKVFNRMVDCGVPPDIVTYNILLDCLCNNGKIEKALVMVEDLQKNQMDVDIITYNIII 972

Query: 429  KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLN 488
            +G+CR+ K+ EA      L   GV  + + Y  +I G C+  ++REA ++   M+++G  
Sbjct: 973  QGMCRNDKVKEAWCLFRSLTRKGVKLDAIAYITMISGLCRNGLRREADKLCTRMKEDGFM 1032

Query: 489  PDAVTWRILDK 499
            P   + RI D+
Sbjct: 1033 P---SERIYDE 1040



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 108/377 (28%), Positives = 183/377 (48%), Gaps = 12/377 (3%)

Query: 122 EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
           E+F I+ D+         ++   +I   CR  R   A  ++  M K G  PS+V++ S++
Sbjct: 92  ELFGISHDL---------YSFTILIHCFCRCSRLSLALSILGKMMKLGYDPSIVTFGSLL 142

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
           HG C       A+ L+   ++ GY P+   Y  L++ LC   D+  A ++L  M  K  +
Sbjct: 143 HGFCLRNRIHDAFSLVASMVKSGYEPNVVVYNTLIDCLCKNGDVNIALELLNEMEKKGRL 202

Query: 242 DRTRIC-NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
               +  N  L  LC      +   +L  M + +  PDV T   +I+ F K G ++EA +
Sbjct: 203 AADLVTYNTLLTGLCYSGEWRQAARILRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQE 262

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +   M+      P+ VT+ ++I GL   GR+  A    + +M  +G  P +VTYN ++ G
Sbjct: 263 LYKQMLQSSI-GPNTVTYNSLINGLCMHGRLYHA-KKTFDLMASKGCFPNVVTYNTLING 320

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
             + RRVE+  ++F  M   G+V D+ TY  +I G C+  +L  AK  +  +V      D
Sbjct: 321 FCKSRRVEDGMKLFQRMYREGLVGDTFTYNTLIHGYCQVGKLRVAKDIFSWMVSCGVTPD 380

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              +  ++ GLC +G+I  A+    ++        IV YN++I G CK     EA+++  
Sbjct: 381 IITHCILLHGLCVNGEIGSAMVKFNDMRSGEKYLGIVAYNIMIHGLCKADKVEEAWELFC 440

Query: 481 EMRKNGLNPDAVTWRIL 497
            +   G+ PDA T+ I+
Sbjct: 441 RLPVEGVKPDARTYTIM 457



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 115/438 (26%), Positives = 195/438 (44%), Gaps = 51/438 (11%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M+  G   ++ S+T LIH +CR   + +A  +  +M   G  P+ +T+  L+ G      
Sbjct: 91  MELFGISHDLYSFTILIHCFCRCSRLSLALSILGKMMKLGYDPSIVTFGSLLHGFCLRNR 150

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDM-PQGKSVNE 138
           +  A  L+  + +   E      N   +  L+D LC+ G VN    +  +M  +G+   +
Sbjct: 151 IHDAFSLVASMVKSGYEP-----NVVVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAAD 205

Query: 139 EFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLE 198
                 ++  LC SG    A+R++  M KR + P + ++ +++    K G    A +L +
Sbjct: 206 LVTYNTLLTGLCYSGEWRQAARILRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQELYK 265

Query: 199 EGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIK 258
           + +Q    P+  TY  L+ GLC    L  A+K    M SK                    
Sbjct: 266 QMLQSSIGPNTVTYNSLINGLCMHGRLYHAKKTFDLMASKG------------------- 306

Query: 259 NPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTF 318
                           C P+V+T NT+INGFCK  R+E+ +K+   M        D  T+
Sbjct: 307 ----------------CFPNVVTYNTLINGFCKSRRVEDGMKLFQRMYREGLVG-DTFTY 349

Query: 319 TTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCML 378
            T+I G   VG+++ A + ++  M   G +P I+T+  +L GL     +  A   FN M 
Sbjct: 350 NTLIHGYCQVGKLRVAKD-IFSWMVSCGVTPDIITHCILLHGLCVNGEIGSAMVKFNDMR 408

Query: 379 G----IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRS 434
                +G+VA    Y I+I GLC++++++EA   +  +       D   Y  MI GLC++
Sbjct: 409 SGEKYLGIVA----YNIMIHGLCKADKVEEAWELFCRLPVEGVKPDARTYTIMILGLCKN 464

Query: 435 GKIHEAVHFLYELVDSGV 452
           G   EA      + + G+
Sbjct: 465 GPRREADELFRRMKEDGI 482



 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 100/384 (26%), Positives = 175/384 (45%), Gaps = 8/384 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C  SR+  A  +   M   G+ P++V++ +L+HG+C    +  A+ +   M   G  PN
Sbjct: 110 FCRCSRLSLALSILGKMMKLGYDPSIVTFGSLLHGFCLRNRIHDAFSLVASMVKSGYEPN 169

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            + Y+ L+  + +  DV  A     +L   M+++  L+ +   +  L+  LC  G   + 
Sbjct: 170 VVVYNTLIDCLCKNGDVNIA----LELLNEMEKKGRLAADLVTYNTLLTGLCYSGEWRQA 225

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            RI  DM + +   + F    +ID+  + G    A  +   M +  + P+ V+YNS+++G
Sbjct: 226 ARILRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYNSLING 285

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LC HG    A +  +     G  P+  TY  L+ G C    +E   K+ Q M  +  V  
Sbjct: 286 LCMHGRLYHAKKTFDLMASKGCFPNVVTYNTLINGFCKSRRVEDGMKLFQRMYREGLVGD 345

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
           T   N  +   C +       ++  +M+     PD+IT   +++G C  G I  A+   N
Sbjct: 346 TFTYNTLIHGYCQVGKLRVAKDIFSWMVSCGVTPDIITHCILLHGLCVNGEIGSAMVKFN 405

Query: 304 DMVAG-KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
           DM +G K+     V +  +I GL    +++EA  L  + +P  G  P   TY  ++ GL 
Sbjct: 406 DMRSGEKYLG--IVAYNIMIHGLCKADKVEEAWELFCR-LPVEGVKPDARTYTIMILGLC 462

Query: 363 RLRRVEEAKEVFNCMLGIGVVADS 386
           +     EA E+F  M   G++  +
Sbjct: 463 KNGPRREADELFRRMKEDGIICQA 486



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 105/417 (25%), Positives = 185/417 (44%), Gaps = 46/417 (11%)

Query: 4    LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
             C  SR   A  L   M   G  P++V+  +L++G+C+      A  + D M   G+ PN
Sbjct: 660  FCRCSRFSLALALLGKMMKLGFQPSIVTLGSLLNGFCQGNRFQEAVSLVDSMAELGLEPN 719

Query: 64   SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             + Y+ ++ G+ + RD+  A  + + +     E++ +  +   +  L+  LC  G   + 
Sbjct: 720  VVIYNTVINGLCKNRDLNNALEIFYGM-----EKKGIVADAVTYNTLISGLCNSGRWTDA 774

Query: 124  FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             R+  DM + K          +ID+  + G    A  +   M +R + P++++YNS+++G
Sbjct: 775  ARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEAKNLYKEMIRRSVHPNILTYNSLING 834

Query: 184  LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
             C  G    A  + +  +  G  P   TY  L+ G C    +E   K+            
Sbjct: 835  FCIQGRLGDAKHMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLF----------- 883

Query: 244  TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               C +  + L                       D  T NT+I+G+C+ G++  A KV N
Sbjct: 884  ---CEMTHQGLV---------------------GDAFTYNTLIHGYCQAGKLNVAQKVFN 919

Query: 304  DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
             MV      PD VT+  ++  L N G+I++AL ++ + + +      I+TYN +++G+ R
Sbjct: 920  RMVDCGV-PPDIVTYNILLDCLCNNGKIEKAL-VMVEDLQKNQMDVDIITYNIIIQGMCR 977

Query: 364  LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA----KRFWDDIVWPS 416
              +V+EA  +F  +   GV  D+  Y  +I GLC +    EA     R  +D   PS
Sbjct: 978  NDKVKEAWCLFRSLTRKGVKLDAIAYITMISGLCRNGLRREADKLCTRMKEDGFMPS 1034



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 98/373 (26%), Positives = 167/373 (44%), Gaps = 7/373 (1%)

Query: 1    MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
            ++  C  +R  EA  L   M   G  PNVV Y T+I+G C+  +++ A ++F  M   G+
Sbjct: 692  LNGFCQGNRFQEAVSLVDSMAELGLEPNVVIYNTVINGLCKNRDLNNALEIFYGMEKKGI 751

Query: 61   LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            + +++TY+ L+ G+  +     A  L+  + +R      +  N   F  L+D+  +EG +
Sbjct: 752  VADAVTYNTLISGLCNSGRWTDAARLLRDMVKR-----KIDPNVIFFTALIDTFVKEGNL 806

Query: 121  NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
             E   + ++M +            +I+  C  GR   A  +  +M  +G  P +V+YN++
Sbjct: 807  LEAKNLYKEMIRRSVHPNILTYNSLINGFCIQGRLGDAKHMFDLMVSKGCFPDVVTYNTL 866

Query: 181  VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
            + G CK        +L  E    G +    TY  L+ G C    L  A+KV   M+    
Sbjct: 867  ITGFCKSKRVEDGMKLFCEMTHQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGV 926

Query: 241  VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                   NI L  LC      + L ++  + + Q   D+IT N +I G C+  +++EA  
Sbjct: 927  PPDIVTYNILLDCLCNNGKIEKALVMVEDLQKNQMDVDIITYNIIIQGMCRNDKVKEAWC 986

Query: 301  VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
            +   +   K    DA+ + T+I GL   G  +EA  L  + M + G+ P    Y+  LR 
Sbjct: 987  LFRSLTR-KGVKLDAIAYITMISGLCRNGLRREADKLCTR-MKEDGFMPSERIYDETLRD 1044

Query: 361  LFRLRRVEEAKEV 373
             +     E  K V
Sbjct: 1045 HYTSLSAELIKAV 1057



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 112/519 (21%), Positives = 212/519 (40%), Gaps = 44/519 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C   RV +  KLF  M   G V +  +Y TLIHGYC+ G++ VA  +F  M  CGV
Sbjct: 318 INGFCKSRRVEDGMKLFQRMYREGLVGDTFTYNTLIHGYCQVGKLRVAKDIFSWMVSCGV 377

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +T+ +L+ G+    ++  A   M K  +    E+ L +   A+  ++  LC+   V
Sbjct: 378 TPDIITHCILLHGLCVNGEIGSA---MVKFNDMRSGEKYLGI--VAYNIMIHGLCKADKV 432

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGL---------- 170
            E + +   +P      +      MI  LC++G    A  +   M++ G+          
Sbjct: 433 EEAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADELFRRMKEDGIICQAEDGHLG 492

Query: 171 ---TPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEK 227
              T + VS  +I+  +C      R   ++E G  + Y      +  LV    G   +  
Sbjct: 493 EHGTNNQVSLGTII--ICPK----RRRSIMESGDLYYYYSDTTLWSSLV----GLIPIAS 542

Query: 228 ARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVIN 287
           +  V  F + +  +   R  N   R+     +     +   +  + + +   I  +    
Sbjct: 543 SSSVKGF-VRRHLLLLERGNNPESRSFSGASHHHHHHHHHHYRERLRSELHCIKFDDAFG 601

Query: 288 GFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGY 347
            FC+M +                  P  V FT ++  +  + +    + L ++ M   G 
Sbjct: 602 LFCEMLQSRPI--------------PSIVDFTRVLTAIAKMNKFDIVIYLFHK-MENLGI 646

Query: 348 SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKR 407
           S  + ++  ++    R  R   A  +   M+ +G      T   +++G C+ N+  EA  
Sbjct: 647 SHDLYSFTILIHCFCRCSRFSLALALLGKMMKLGFQPSIVTLGSLLNGFCQGNRFQEAVS 706

Query: 408 FWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGAC 467
             D +       +  +Y  +I GLC++  ++ A+   Y +   G+  + V YN +I G C
Sbjct: 707 LVDSMAELGLEPNVVIYNTVINGLCKNRDLNNALEIFYGMEKKGIVADAVTYNTLISGLC 766

Query: 468 KLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
                 +A ++LR+M K  ++P+ + +  L       GN
Sbjct: 767 NSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGN 805



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 121/255 (47%), Gaps = 3/255 (1%)

Query: 248 NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA 307
            I +   C     +  L++L  M++    P ++T  ++++GFC   RI +A  ++  MV 
Sbjct: 104 TILIHCFCRCSRLSLALSILGKMMKLGYDPSIVTFGSLLHGFCLRNRIHDAFSLVASMVK 163

Query: 308 GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRV 367
             +  P+ V + T+I  L   G +  AL LL ++  +   +  +VTYN +L GL      
Sbjct: 164 SGY-EPNVVVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTYNTLLTGLCYSGEW 222

Query: 368 EEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAM 427
            +A  +   M    +  D  T+  +ID   +   LDEA+  +  ++  S   +   Y ++
Sbjct: 223 RQAARILRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYNSL 282

Query: 428 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
           I GLC  G+++ A      +   G  PN+V YN +I+G CK     +  ++ + M + GL
Sbjct: 283 INGLCMHGRLYHAKKTFDLMASKGCFPNVVTYNTLINGFCKSRRVEDGMKLFQRMYREGL 342

Query: 488 NPDAVTWRILDKLHG 502
             D  T+  L  +HG
Sbjct: 343 VGDTFTYNTL--IHG 355



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 108/244 (44%), Gaps = 23/244 (9%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D       + EA +L+  M      PN V+Y +LI+G C  G +  A K FD M   G 
Sbjct: 248 IDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYNSLINGLCMHGRLYHAKKTFDLMASKGC 307

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +TY+ L+ G  ++R VE       KL++RM   E L  +   +  L+   C+ G +
Sbjct: 308 FPNVVTYNTLINGFCKSRRVEDG----MKLFQRMY-REGLVGDTFTYNTLIHGYCQVGKL 362

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMID---------SLCRSGRNHGASRVVYVMRKRGLT 171
               R+A+D+      +   +CG   D          LC +G    A      MR     
Sbjct: 363 ----RVAKDI-----FSWMVSCGVTPDIITHCILLHGLCVNGEIGSAMVKFNDMRSGEKY 413

Query: 172 PSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKV 231
             +V+YN ++HGLCK      A++L       G  P   TY +++ GLC      +A ++
Sbjct: 414 LGIVAYNIMIHGLCKADKVEEAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADEL 473

Query: 232 LQFM 235
            + M
Sbjct: 474 FRRM 477



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 103/221 (46%), Gaps = 3/221 (1%)

Query: 287 NGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
            GF    R E+AL +  +MV  +   P  V FT ++  + N+ R  E +    Q M   G
Sbjct: 38  TGFLHSIRFEDALDLFLEMVQSQ-PLPSVVDFTRLLTAIANLRR-YETVIYFSQQMELFG 95

Query: 347 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
            S  + ++  ++    R  R+  A  +   M+ +G      T+  ++ G C  N++ +A 
Sbjct: 96  ISHDLYSFTILIHCFCRCSRLSLALSILGKMMKLGYDPSIVTFGSLLHGFCLRNRIHDAF 155

Query: 407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG-VTPNIVCYNVVIDG 465
                +V      +  VY  +I  LC++G ++ A+  L E+   G +  ++V YN ++ G
Sbjct: 156 SLVASMVKSGYEPNVVVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTYNTLLTG 215

Query: 466 ACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
            C     R+A +ILR+M K  +NPD  T+  L      +GN
Sbjct: 216 LCYSGEWRQAARILRDMTKRRINPDVFTFTALIDAFVKQGN 256


>gi|115444031|ref|NP_001045795.1| Os02g0132100 [Oryza sativa Japonica Group]
 gi|41052573|dbj|BAD07755.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113535326|dbj|BAF07709.1| Os02g0132100 [Oryza sativa Japonica Group]
 gi|125537962|gb|EAY84357.1| hypothetical protein OsI_05732 [Oryza sativa Indica Group]
 gi|125580699|gb|EAZ21630.1| hypothetical protein OsJ_05259 [Oryza sativa Japonica Group]
          Length = 871

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 145/532 (27%), Positives = 236/532 (44%), Gaps = 77/532 (14%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +  LC   R+  A ++F  M  R    N  S+  L  GYCR G    A  V D M     
Sbjct: 157 LQALCAAGRMELARRVFDAMPER----NEFSFGILARGYCRAGRSMDALGVLDSMPTM-- 210

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             N +  + +V G  R   V+ A     +L ERM++E  L+ N   F   + +LC+ G V
Sbjct: 211 --NLVVCNTVVAGFCREGQVDEAE----RLVERMRDE-GLAPNVVTFNARISALCKAGRV 263

Query: 121 NEVFRIAEDMPQ----GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVS 176
            + +RI  DM +    G    ++     M+   C +G    A  +V +MR  G    + S
Sbjct: 264 LDAYRIFNDMQEKWERGLPRPDQVTFDVMLSGFCEAGMVDEARVLVDIMRCGGFLRRVES 323

Query: 177 YNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFML 236
           YN  + GL ++G    A +LL E    G  P+ +TY ++V+GLC E      RKV  F+ 
Sbjct: 324 YNRWLSGLVRNGMVGEAQELLREMAHEGVQPNSYTYNIIVDGLCKEGKAFDVRKVEDFVK 383

Query: 237 SKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIE 296
           S                            V+         PDV+T  ++++ +C  G   
Sbjct: 384 S---------------------------GVMT--------PDVVTYTSLLHAYCSEGNAA 408

Query: 297 EALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
            A ++L++M A K CAP++ T+  ++  L   GRI EA  LL + M ++GYS    + N 
Sbjct: 409 AANRILDEM-AQKGCAPNSFTYNVLLQSLWKAGRITEAERLL-ERMSEKGYSLDTASCNI 466

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVA-----------------------DSTTYAIVI 393
           ++ GL R  +++ A ++ + M   G +A                       D  TY+ ++
Sbjct: 467 IIDGLCRNNKLDMAMDIVDGMWNEGSLALGRLGYSFLSLLTDSSSSKRCLPDRITYSTLV 526

Query: 394 DGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVT 453
             LC+  + DEAK+   +++      D+ +Y   I G C+ GK   AV  L ++   G  
Sbjct: 527 SALCKEGRFDEAKKKLLEMIGKDISPDSVLYDTFIHGYCKHGKTSLAVKVLRDMEKKGCK 586

Query: 454 PNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
           P+   YN++I G  +     E  +++ EM+  G+ P+ +T+  L K    RG
Sbjct: 587 PSTRTYNLLIWGFREKHNSDEILKLISEMKGKGICPNVMTYNSLIKSFCERG 638



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 124/521 (23%), Positives = 241/521 (46%), Gaps = 35/521 (6%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHV----PNVVSYTTLIHGYCRTGEMDVAYKVFDEMR 56
           +  LC   RV +A+++F DM+ +       P+ V++  ++ G+C  G +D A  + D MR
Sbjct: 254 ISALCKAGRVLDAYRIFNDMQEKWERGLPRPDQVTFDVMLSGFCEAGMVDEARVLVDIMR 313

Query: 57  HCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCR 116
             G L    +Y+  + G++R   V  A  L+     R    E +  N+  +  +VD LC+
Sbjct: 314 CGGFLRRVESYNRWLSGLVRNGMVGEAQELL-----REMAHEGVQPNSYTYNIIVDGLCK 368

Query: 117 EGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVS 176
           EG   +V ++ + +  G    +      ++ + C  G    A+R++  M ++G  P+  +
Sbjct: 369 EGKAFDVRKVEDFVKSGVMTPDVVTYTSLLHAYCSEGNAAAANRILDEMAQKGCAPNSFT 428

Query: 177 YNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFML 236
           YN ++  L K G    A +LLE   + GY     +  ++++GLC  + L+ A  ++  M 
Sbjct: 429 YNVLLQSLWKAGRITEAERLLERMSEKGYSLDTASCNIIIDGLCRNNKLDMAMDIVDGMW 488

Query: 237 SKKDVDRTRI----------------C-------NIYLRALCLIKNPTELLNVLVFMLQT 273
           ++  +   R+                C       +  + ALC      E    L+ M+  
Sbjct: 489 NEGSLALGRLGYSFLSLLTDSSSSKRCLPDRITYSTLVSALCKEGRFDEAKKKLLEMIGK 548

Query: 274 QCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQE 333
              PD +  +T I+G+CK G+   A+KVL DM   K C P   T+  +I+G        E
Sbjct: 549 DISPDSVLYDTFIHGYCKHGKTSLAVKVLRDM-EKKGCKPSTRTYNLLIWGFREKHNSDE 607

Query: 334 ALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVI 393
            L L+ + M  +G  P ++TYN++++       V +A  + + ML   +V + T++ ++I
Sbjct: 608 ILKLISE-MKGKGICPNVMTYNSLIKSFCERGMVNKAMPLLDEMLQNEIVPNITSFELLI 666

Query: 394 DGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVT 453
              C+++    A+R +D  +         +Y+ M   L   G+  EA++ L  +++  ++
Sbjct: 667 KAFCKTSDFSAAQRVFDASLSTCG-QKEVLYSLMCTQLSTYGRWLEAMNILETVLELRIS 725

Query: 454 PNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
            +   Y  +I+G CK+      +++L+ +   G + D   +
Sbjct: 726 IHRFPYKQIIEGLCKVDEVDHGHRLLKLLMVKGYSFDPAAF 766



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 106/421 (25%), Positives = 189/421 (44%), Gaps = 31/421 (7%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   +  +  K+   +KS    P+VV+YT+L+H YC  G    A ++ DEM   G 
Sbjct: 363 VDGLCKEGKAFDVRKVEDFVKSGVMTPDVVTYTSLLHAYCSEGNAAAANRILDEMAQKGC 422

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PNS TY+VL++ + +   +  A     +L ERM E+   S++ A+   ++D LCR   +
Sbjct: 423 APNSFTYNVLLQSLWKAGRITEAE----RLLERMSEK-GYSLDTASCNIIIDGLCRNNKL 477

Query: 121 NEVFRIAEDMPQGKSVN-----------------------EEFACGHMIDSLCRSGRNHG 157
           +    I + M    S+                        +      ++ +LC+ GR   
Sbjct: 478 DMAMDIVDGMWNEGSLALGRLGYSFLSLLTDSSSSKRCLPDRITYSTLVSALCKEGRFDE 537

Query: 158 ASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVE 217
           A + +  M  + ++P  V Y++ +HG CKHG    A ++L +  + G  PS  TY +L+ 
Sbjct: 538 AKKKLLEMIGKDISPDSVLYDTFIHGYCKHGKTSLAVKVLRDMEKKGCKPSTRTYNLLIW 597

Query: 218 GLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQP 277
           G   + + ++  K++  M  K         N  +++ C      + + +L  MLQ +  P
Sbjct: 598 GFREKHNSDEILKLISEMKGKGICPNVMTYNSLIKSFCERGMVNKAMPLLDEMLQNEIVP 657

Query: 278 DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNL 337
           ++ +   +I  FCK      A +V +  ++   C    V ++ +   L   GR  EA+N+
Sbjct: 658 NITSFELLIKAFCKTSDFSAAQRVFDASLST--CGQKEVLYSLMCTQLSTYGRWLEAMNI 715

Query: 338 LYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLC 397
           L  V+  R  S     Y  ++ GL ++  V+    +   ++  G   D   +  VID L 
Sbjct: 716 LETVLELR-ISIHRFPYKQIIEGLCKVDEVDHGHRLLKLLMVKGYSFDPAAFMPVIDALS 774

Query: 398 E 398
           E
Sbjct: 775 E 775



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 116/481 (24%), Positives = 194/481 (40%), Gaps = 93/481 (19%)

Query: 107 FANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMR 166
           +  L+ +  +E   + V  + +D+    +  + F    ++ +LC +GR   A RV   M 
Sbjct: 118 YNRLLLAALQEARFDLVESLYKDLLLSGAAPDVFTRNILLQALCAAGRMELARRVFDAMP 177

Query: 167 KRG---------------------------LTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
           +R                             T +LV  N++V G C+ G    A +L+E 
Sbjct: 178 ERNEFSFGILARGYCRAGRSMDALGVLDSMPTMNLVVCNTVVAGFCREGQVDEAERLVER 237

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD------------------- 240
               G  P+  T+   +  LC    +  A ++   M  K +                   
Sbjct: 238 MRDEGLAPNVVTFNARISALCKAGRVLDAYRIFNDMQEKWERGLPRPDQVTFDVMLSGFC 297

Query: 241 ----VDRTRI------CNIYLRAL--------CLIKNPT--ELLNVLVFMLQTQCQPDVI 280
               VD  R+      C  +LR +         L++N    E   +L  M     QP+  
Sbjct: 298 EAGMVDEARVLVDIMRCGGFLRRVESYNRWLSGLVRNGMVGEAQELLREMAHEGVQPNSY 357

Query: 281 TLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQ 340
           T N +++G CK G+  +  KV  D V      PD VT+T+++    + G    A N +  
Sbjct: 358 TYNIIVDGLCKEGKAFDVRKV-EDFVKSGVMTPDVVTYTSLLHAYCSEGNAAAA-NRILD 415

Query: 341 VMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN 400
            M Q+G +P   TYN +L+ L++  R+ EA+ +   M   G   D+ +  I+IDGLC +N
Sbjct: 416 EMAQKGCAPNSFTYNVLLQSLWKAGRITEAERLLERMSEKGYSLDTASCNIIIDGLCRNN 475

Query: 401 QLDEAKRFWDDIVWPSN------------------------IHDNYVYAAMIKGLCRSGK 436
           +LD A    D + W                           + D   Y+ ++  LC+ G+
Sbjct: 476 KLDMAMDIVDGM-WNEGSLALGRLGYSFLSLLTDSSSSKRCLPDRITYSTLVSALCKEGR 534

Query: 437 IHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRI 496
             EA   L E++   ++P+ V Y+  I G CK      A ++LR+M K G  P   T+ +
Sbjct: 535 FDEAKKKLLEMIGKDISPDSVLYDTFIHGYCKHGKTSLAVKVLRDMEKKGCKPSTRTYNL 594

Query: 497 L 497
           L
Sbjct: 595 L 595



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 96/350 (27%), Positives = 151/350 (43%), Gaps = 17/350 (4%)

Query: 169 GLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLP--SEHTYKVLVEGLCGESDLE 226
           G  P + + N ++  LC  G    A ++      F  +P  +E ++ +L  G C      
Sbjct: 145 GAAPDVFTRNILLQALCAAGRMELARRV------FDAMPERNEFSFGILARGYCRAGRSM 198

Query: 227 KARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVI 286
            A  VL  M +   V    +CN  +   C      E   ++  M      P+V+T N  I
Sbjct: 199 DALGVLDSMPTMNLV----VCNTVVAGFCREGQVDEAERLVERMRDEGLAPNVVTFNARI 254

Query: 287 NGFCKMGRIEEALKVLNDMVAG---KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMP 343
           +  CK GR+ +A ++ NDM          PD VTF  ++ G    G + EA  +L  +M 
Sbjct: 255 SALCKAGRVLDAYRIFNDMQEKWERGLPRPDQVTFDVMLSGFCEAGMVDEA-RVLVDIMR 313

Query: 344 QRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLD 403
             G+   + +YN  L GL R   V EA+E+   M   GV  +S TY I++DGLC+  +  
Sbjct: 314 CGGFLRRVESYNRWLSGLVRNGMVGEAQELLREMAHEGVQPNSYTYNIIVDGLCKEGKAF 373

Query: 404 EAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463
           + ++  D +       D   Y +++   C  G    A   L E+   G  PN   YNV++
Sbjct: 374 DVRKVEDFVKSGVMTPDVVTYTSLLHAYCSEGNAAAANRILDEMAQKGCAPNSFTYNVLL 433

Query: 464 DGACKLSMKREAYQILREMRKNGLNPDAVTWR-ILDKLHGNRGNDFGLRI 512
               K     EA ++L  M + G + D  +   I+D L  N   D  + I
Sbjct: 434 QSLWKAGRITEAERLLERMSEKGYSLDTASCNIIIDGLCRNNKLDMAMDI 483


>gi|359497434|ref|XP_003635514.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Vitis vinifera]
          Length = 347

 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 108/333 (32%), Positives = 174/333 (52%), Gaps = 2/333 (0%)

Query: 165 MRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESD 224
           M   G  P + +YN+++ GLCK G  + A +L+ E    G  P+  TY +L++  C E  
Sbjct: 5   MLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGR 64

Query: 225 LEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNT 284
           LE+AR VL  M  K         N  + ALC  +   + LN+   M    C+PD+ T N+
Sbjct: 65  LEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNS 124

Query: 285 VINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ 344
           +I G CK+ + EEAL +  DM+     A + +T+ T+I   L  G +QEAL L+   M  
Sbjct: 125 LIFGLCKVNKFEEALGLYQDMLLEGVIA-NTITYNTLIHAFLRRGAMQEALKLVND-MLF 182

Query: 345 RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 404
           RG     +TYN +++ L R   +E+   +F  M+  G+  ++ +  I+I+GLC +  +  
Sbjct: 183 RGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQH 242

Query: 405 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
           A  F  D++      D   Y ++I GLC++G+  EA++   +L   G+ P+ + YN +I 
Sbjct: 243 ALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLIS 302

Query: 465 GACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
             CK  M  +A+ +L     +G  P+ VTW IL
Sbjct: 303 WHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYIL 335



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 92/335 (27%), Positives = 163/335 (48%), Gaps = 7/335 (2%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M S G  P++ +Y TLI G C+ G +  A ++ +EM+  G  PN +TY++L+    +   
Sbjct: 5   MLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGR 64

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
           +E A  ++ ++       + L++N   +  L+ +LC++  V +   +  DM       + 
Sbjct: 65  LEEARNVLDEM-----SGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDI 119

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
           F    +I  LC+  +   A  +   M   G+  + ++YN+++H   + G    A +L+ +
Sbjct: 120 FTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVND 179

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
            +  G    + TY  L++ LC   ++EK   + + M+SK        CNI +  LC   N
Sbjct: 180 MLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGN 239

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
               L  L  M+     PD++T N++ING CK GR +EAL + + +     C PDA+T+ 
Sbjct: 240 IQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGIC-PDAITYN 298

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTY 354
           T+I      G   +A +LL       G+ P  VT+
Sbjct: 299 TLISWHCKEGMFDDA-HLLLSRGVDSGFIPNEVTW 332



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 92/330 (27%), Positives = 147/330 (44%), Gaps = 2/330 (0%)

Query: 106 AFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVM 165
            +  L+  LC++GY+     +  +M              +ID  C+ GR   A  V+  M
Sbjct: 16  TYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEM 75

Query: 166 RKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDL 225
             +GL  + V YN ++  LCK      A  +  +    G  P   T+  L+ GLC  +  
Sbjct: 76  SGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKF 135

Query: 226 EKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTV 285
           E+A  + Q ML +  +  T   N  + A        E L ++  ML   C  D IT N +
Sbjct: 136 EEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGL 195

Query: 286 INGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQR 345
           I   C+ G IE+ L +  DM++ K   P+ ++   +I GL   G IQ AL  L   M  R
Sbjct: 196 IKALCRAGNIEKGLALFEDMMS-KGLNPNNISCNILINGLCRTGNIQHALEFLRD-MIHR 253

Query: 346 GYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA 405
           G +P IVTYN+++ GL +  R +EA  +F+ +   G+  D+ TY  +I   C+    D+A
Sbjct: 254 GLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDA 313

Query: 406 KRFWDDIVWPSNIHDNYVYAAMIKGLCRSG 435
                  V    I +   +  ++    + G
Sbjct: 314 HLLLSRGVDSGFIPNEVTWYILVSNFIKEG 343



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 118/233 (50%), Gaps = 5/233 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +  LC   +V +A  +F DM S+G  P++ ++ +LI G C+  + + A  ++ +M   GV
Sbjct: 91  ISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGV 150

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           + N++TY+ L+   LR   ++ A  L+  +  R    +D++ N      L+ +LCR G +
Sbjct: 151 IANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNG-----LIKALCRAGNI 205

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +   + EDM          +C  +I+ LCR+G    A   +  M  RGLTP +V+YNS+
Sbjct: 206 EKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSL 265

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQ 233
           ++GLCK G    A  L ++    G  P   TY  L+   C E   + A  +L 
Sbjct: 266 INGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLLLS 318



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 84/326 (25%), Positives = 149/326 (45%), Gaps = 6/326 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC    +  A +L  +M+ +G  PNV++YT LI  +C+ G ++ A  V DEM   G+  N
Sbjct: 24  LCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALN 83

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           ++ Y+ L+  + +   V+ A + MF        + D+      F +L+  LC+     E 
Sbjct: 84  AVGYNCLISALCKDEKVQDA-LNMFGDMSSKGCKPDI----FTFNSLIFGLCKVNKFEEA 138

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             + +DM     +        +I +  R G    A ++V  M  RG     ++YN ++  
Sbjct: 139 LGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKA 198

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LC+ G   +   L E+ +  G  P+  +  +L+ GLC   +++ A + L+ M+ +     
Sbjct: 199 LCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPD 258

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               N  +  LC      E LN+   +      PD IT NT+I+  CK G  ++A  +L+
Sbjct: 259 IVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLLLS 318

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVG 329
             V   F  P+ VT+  ++   +  G
Sbjct: 319 RGVDSGF-IPNEVTWYILVSNFIKEG 343



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 113/223 (50%), Gaps = 5/223 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC +++  EA  L+ DM   G + N ++Y TLIH + R G M  A K+ ++M   G   +
Sbjct: 129 LCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLD 188

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY+ L++ + R  ++E+       L+E M  +  L+ NN +   L++ LCR G +   
Sbjct: 189 DITYNGLIKALCRAGNIEKG----LALFEDMMSK-GLNPNNISCNILINGLCRTGNIQHA 243

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
                DM       +      +I+ LC++GR   A  +   ++  G+ P  ++YN+++  
Sbjct: 244 LEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISW 303

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLE 226
            CK G    A+ LL  G+  G++P+E T+ +LV     E D E
Sbjct: 304 HCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFIKEGDQE 346



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 97/196 (49%), Gaps = 1/196 (0%)

Query: 311 CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEA 370
           C PD  T+ T+I GL   G +  A  L+ + M  +G  P ++TY  ++    +  R+EEA
Sbjct: 10  CGPDIFTYNTLILGLCKKGYLVSARELMNE-MQIKGCEPNVITYTILIDRFCKEGRLEEA 68

Query: 371 KEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKG 430
           + V + M G G+  ++  Y  +I  LC+  ++ +A   + D+       D + + ++I G
Sbjct: 69  RNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFG 128

Query: 431 LCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD 490
           LC+  K  EA+    +++  GV  N + YN +I    +    +EA +++ +M   G   D
Sbjct: 129 LCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLD 188

Query: 491 AVTWRILDKLHGNRGN 506
            +T+  L K     GN
Sbjct: 189 DITYNGLIKALCRAGN 204



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 82/160 (51%)

Query: 338 LYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLC 397
           +++ M   G  P I TYN ++ GL +   +  A+E+ N M   G   +  TY I+ID  C
Sbjct: 1   MHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFC 60

Query: 398 ESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIV 457
           +  +L+EA+   D++       +   Y  +I  LC+  K+ +A++   ++   G  P+I 
Sbjct: 61  KEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIF 120

Query: 458 CYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            +N +I G CK++   EA  + ++M   G+  + +T+  L
Sbjct: 121 TFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTL 160


>gi|414591656|tpg|DAA42227.1| TPA: PPR-814a [Zea mays]
          Length = 816

 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 120/489 (24%), Positives = 235/489 (48%), Gaps = 9/489 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC    + +A      M ++G +P+  +Y  LI+GY  TG+   A +VF EMR   +LP+
Sbjct: 266 LCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPD 325

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +  + L+  + +   ++ A  +   +  + +  +  S     +  +++    +G + ++
Sbjct: 326 VVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFS-----YTIMLNGYATKGCLVDM 380

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             + + M       + +    +I +    G    A  +   MR  G+ P +V+Y +++  
Sbjct: 381 TDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAA 440

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVL-QFMLSKKDVD 242
           LC+ G    A +   + I  G +P ++ Y  L++G C    L KA++++ + M +   +D
Sbjct: 441 LCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLD 500

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
                +I +  LC +    +  N+    +     PD +  N +++G+C +G++E+AL+V 
Sbjct: 501 IVFFGSI-INNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVF 559

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
           + MV+     P+ V + T++ G   +GRI E L+ L++ M Q+G  P  + YN ++ GLF
Sbjct: 560 DAMVSAGI-EPNVVGYGTLVNGYCKIGRIDEGLS-LFREMLQKGIKPSTILYNIIIDGLF 617

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
              R   AK  F+ M   G+  +  TY+IV+ GL ++   DEA   + ++   +   D  
Sbjct: 618 EAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDII 677

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
               MI G+ ++ ++ EA      +  SG+ P  V Y+++I    K  +  EA  +   M
Sbjct: 678 TLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCAVTYSIMITNLLKEGLVEEAEDMFSSM 737

Query: 483 RKNGLNPDA 491
           +  G  PD+
Sbjct: 738 QNAGCEPDS 746



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 134/501 (26%), Positives = 231/501 (46%), Gaps = 16/501 (3%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVS-----YTTLIHGYCRTGEMDVAYKVFDEMRHCG 59
           CG S    A  LF    SR   P V+S     Y  L+    R    ++A   F ++   G
Sbjct: 85  CG-SGPALAVALFNRAASRAQGPRVLSPTSYTYAILMDCCTRAHRPELALAFFGQLLRTG 143

Query: 60  VLPNSLTYSVLVRGVLRTRDVERA-NVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREG 118
           +  +++  S L++G    +  + A ++L+ +  E     +  S N      L+ SLC +G
Sbjct: 144 LRVDAIIASHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYNI-----LLKSLCNQG 198

Query: 119 YVNEVFRIAEDMPQGKSV--NEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVS 176
              +   +   M +G +V   +  A   +ID   + G  + A  +   M +RG+ P LV+
Sbjct: 199 KSGQADDLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVT 258

Query: 177 YNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFML 236
           Y+S+VH LCK     +A   L + +  G LP   TY  L+ G       ++A +V + M 
Sbjct: 259 YSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMR 318

Query: 237 SKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIE 296
            +  +      N  + +LC      E  +V   M      PDV +   ++NG+   G + 
Sbjct: 319 RQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLV 378

Query: 297 EALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
           + +  L D++ G   APD  TF  +I    N G + +A+ +++  M   G  P +VTY  
Sbjct: 379 D-MTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAM-IIFNEMRDHGVKPHVVTYMT 436

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416
           V+  L R+ ++++A E FN M+  GVV D   Y  +I G C    L +AK    +I+   
Sbjct: 437 VIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNG 496

Query: 417 NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAY 476
              D   + ++I  LC+ G++ +A +     V+ G+ P+ V YN+++DG C +    +A 
Sbjct: 497 MRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKAL 556

Query: 477 QILREMRKNGLNPDAVTWRIL 497
           ++   M   G+ P+ V +  L
Sbjct: 557 RVFDAMVSAGIEPNVVGYGTL 577



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 119/488 (24%), Positives = 227/488 (46%), Gaps = 7/488 (1%)

Query: 10  VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSV 69
           V +A  LF +M  RG  P++V+Y++++H  C+   MD A     +M + GVLP++ TY+ 
Sbjct: 237 VNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNN 296

Query: 70  LVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAED 129
           L+ G   T   + A V +FK   R     D+     A   L+ SLC+ G + E   + + 
Sbjct: 297 LIYGYSSTGQWKEA-VRVFKEMRRQSILPDV----VALNTLMGSLCKYGKIKEARDVFDT 351

Query: 130 MPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG 189
           M       + F+   M++     G     + +  +M   G+ P + ++N ++      G 
Sbjct: 352 MAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGM 411

Query: 190 CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNI 249
             +A  +  E    G  P   TY  ++  LC    ++ A +    M+ +  V      + 
Sbjct: 412 LDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHC 471

Query: 250 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK 309
            ++  C   +  +   ++  ++    + D++   ++IN  CK+GR+ +A  +  D+    
Sbjct: 472 LIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIF-DLTVNV 530

Query: 310 FCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEE 369
              PDAV +  ++ G   VG++++AL + +  M   G  P +V Y  ++ G  ++ R++E
Sbjct: 531 GLHPDAVVYNMLMDGYCLVGKMEKALRV-FDAMVSAGIEPNVVGYGTLVNGYCKIGRIDE 589

Query: 370 AKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIK 429
              +F  ML  G+   +  Y I+IDGL E+ +   AK  + ++       +   Y+ +++
Sbjct: 590 GLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLR 649

Query: 430 GLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNP 489
           GL ++    EA+    EL    V  +I+  N +I G  +     EA  +   + ++GL P
Sbjct: 650 GLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVP 709

Query: 490 DAVTWRIL 497
            AVT+ I+
Sbjct: 710 CAVTYSIM 717



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 121/506 (23%), Positives = 224/506 (44%), Gaps = 42/506 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M  LC   ++ EA  +F  M  +G  P+V SYT +++GY   G +     +FD M   G+
Sbjct: 333 MGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGI 392

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+  T++VL++       +++A ++  ++      +  +  +   +  ++ +LCR G +
Sbjct: 393 APDIYTFNVLIKAYANCGMLDKAMIIFNEM-----RDHGVKPHVVTYMTVIAALCRIGKM 447

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           ++       M     V +++A   +I   C  G    A  ++  +   G+   +V + SI
Sbjct: 448 DDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSI 507

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++ LCK G  M A  + +  +  G  P    Y +L++G C    +EKA            
Sbjct: 508 INNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKA------------ 555

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                  L V   M+    +P+V+   T++NG+CK+GRI+E L 
Sbjct: 556 -----------------------LRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLS 592

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +  +M+  K   P  + +  II GL   GR   A  + +  M + G +    TY+ VLRG
Sbjct: 593 LFREMLQ-KGIKPSTILYNIIIDGLFEAGRTVPA-KVKFHEMTESGIAMNKCTYSIVLRG 650

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           LF+ R  +EA  +F  +  + V  D  T   +I G+ ++ +++EAK  +  I     +  
Sbjct: 651 LFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPC 710

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              Y+ MI  L + G + EA      + ++G  P+    N V+    K +    A   L 
Sbjct: 711 AVTYSIMITNLLKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAGAYLS 770

Query: 481 EMRKNGLNPDAVTWRILDKLHGNRGN 506
           ++ +   + + +T  +L  L  ++G 
Sbjct: 771 KIDERNFSLEHLTAMLLVDLFSSKGT 796



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 123/238 (51%), Gaps = 3/238 (1%)

Query: 270 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG 329
           +L+T  + D I  + ++ GFC+  R +EAL +L        C PD  ++  ++  L N G
Sbjct: 139 LLRTGLRVDAIIASHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYNILLKSLCNQG 198

Query: 330 RIQEALNLLYQVMPQRGY--SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADST 387
           +  +A +LL ++M + G   SP +V YN V+ G F+   V +A ++F  M+  G+  D  
Sbjct: 199 KSGQADDLL-RMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLV 257

Query: 388 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYEL 447
           TY+ V+  LC++  +D+A+ F   +V    + DN+ Y  +I G   +G+  EAV    E+
Sbjct: 258 TYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEM 317

Query: 448 VDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
               + P++V  N ++   CK    +EA  +   M   G NPD  ++ I+   +  +G
Sbjct: 318 RRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKG 375



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 5/117 (4%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           RV EA  LF  +   G VP  V+Y+ +I    + G ++ A  +F  M++ G  P+S   +
Sbjct: 691 RVEEAKDLFASISRSGLVPCAVTYSIMITNLLKEGLVEEAEDMFSSMQNAGCEPDSRLLN 750

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFR 125
            +VR +L+  ++ RA   + K+ ER     + S+ +     LVD    +G   E  R
Sbjct: 751 HVVRELLKKNEIVRAGAYLSKIDER-----NFSLEHLTAMLLVDLFSSKGTCREQIR 802


>gi|356557251|ref|XP_003546931.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Glycine max]
          Length = 808

 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 119/465 (25%), Positives = 220/465 (47%), Gaps = 13/465 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC L ++ E  +L  D   +G VP+VV Y  +I GYC+ G++  A +   E++  GVLP 
Sbjct: 211 LCNLGKIEEGRRLVKDRWGKGCVPHVVFYNMIIDGYCKKGDLQCATRTLKELKMKGVLPT 270

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVN-- 121
             TY  L+ G  +  + E  + L+ ++  R      L++N   F N++D+  + G V   
Sbjct: 271 VETYGALINGFCKAGEFEAVDQLLTEMAAR-----GLNMNVKVFNNVIDAEFKYGLVTKA 325

Query: 122 -EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E  R   +M  G  +        MI+  C+ GR   A   +   ++RGL P+  SY  +
Sbjct: 326 AETMRRMAEMGCGPDIT---TYNTMINFSCKGGRIKEADEFLEKAKERGLLPNKFSYTPL 382

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +H  CK G  ++A  +L    + G  P   +Y   + G+    +++ A  V + M+ K  
Sbjct: 383 MHAYCKQGDYVKAAGMLFRIAEIGEKPDLVSYGAFIHGVVVHGEIDVALMVREKMMEKGV 442

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
               +I N+ +  LC       +  +L  ML    QPDV    T+++GF + G ++EA+K
Sbjct: 443 FPDAQIYNVLMSGLCKNGRFPAMKLLLSEMLDRNVQPDVYVFATLMDGFIRNGELDEAIK 502

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +   ++  K   P  V +  +I G    G++ +AL+ L + M    ++P   TY+ V+ G
Sbjct: 503 IFK-VIIRKGVDPGIVGYNAMIKGFCKFGKMTDALSCLNK-MKNVHHAPDEYTYSTVIDG 560

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
             +   +  A ++F  M+      +  TY  +I+G C+   +  A++ +  +     + +
Sbjct: 561 YVKQHDMSSALKMFGQMMKHKFKPNVITYTSLINGFCKKADMIRAEKVFRGMKSFDLVPN 620

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDG 465
              Y  ++ G  ++GK  +A      ++ +G  PN   ++ +I+G
Sbjct: 621 VVTYTTLVGGFFKAGKPEKATSIFELMLMNGCPPNDATFHYLING 665



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 125/482 (25%), Positives = 224/482 (46%), Gaps = 49/482 (10%)

Query: 19  DMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFD---EMRHCGVLPNSLTYSVLVRGVL 75
           +MK++   P   +++ LI  Y  +G +D A ++F    EM +C  LP  +  + L+ G++
Sbjct: 116 NMKAQHLKPTREAFSALILAYGESGSLDRALQLFHTVREMHNC--LPTVVASNSLLNGLV 173

Query: 76  RTRDVERANVLMFKLWERMKEEEDLS---VNNAAFANLVDSLCREGYVNEVFRIAEDMPQ 132
           ++  V+ A     +L+++M + +D +   V+N   + +V  LC  G + E  R+ +D   
Sbjct: 174 KSGKVDVA----LQLYDKMLQTDDGTGAVVDNYTTSIVVKGLCNLGKIEEGRRLVKD--- 226

Query: 133 GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMR 192
                             R G+              G  P +V YN I+ G CK G    
Sbjct: 227 ------------------RWGK--------------GCVPHVVFYNMIIDGYCKKGDLQC 254

Query: 193 AYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLR 252
           A + L+E    G LP+  TY  L+ G C   + E   ++L  M ++      ++ N  + 
Sbjct: 255 ATRTLKELKMKGVLPTVETYGALINGFCKAGEFEAVDQLLTEMAARGLNMNVKVFNNVID 314

Query: 253 ALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCA 312
           A       T+    +  M +  C PD+ T NT+IN  CK GRI+EA + L +    +   
Sbjct: 315 AEFKYGLVTKAAETMRRMAEMGCGPDITTYNTMINFSCKGGRIKEADEFL-EKAKERGLL 373

Query: 313 PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKE 372
           P+  ++T ++      G   +A  +L+++  + G  P +V+Y A + G+     ++ A  
Sbjct: 374 PNKFSYTPLMHAYCKQGDYVKAAGMLFRI-AEIGEKPDLVSYGAFIHGVVVHGEIDVALM 432

Query: 373 VFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLC 432
           V   M+  GV  D+  Y +++ GLC++ +    K    +++  +   D YV+A ++ G  
Sbjct: 433 VREKMMEKGVFPDAQIYNVLMSGLCKNGRFPAMKLLLSEMLDRNVQPDVYVFATLMDGFI 492

Query: 433 RSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAV 492
           R+G++ EA+     ++  GV P IV YN +I G CK     +A   L +M+     PD  
Sbjct: 493 RNGELDEAIKIFKVIIRKGVDPGIVGYNAMIKGFCKFGKMTDALSCLNKMKNVHHAPDEY 552

Query: 493 TW 494
           T+
Sbjct: 553 TY 554



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 124/521 (23%), Positives = 238/521 (45%), Gaps = 33/521 (6%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C    +  A +   ++K +G +P V +Y  LI+G+C+ GE +   ++  EM   G+
Sbjct: 243 IDGYCKKGDLQCATRTLKELKMKGVLPTVETYGALINGFCKAGEFEAVDQLLTEMAARGL 302

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             N   ++ ++    +   V +A   M ++ E M    D++  N     +++  C+ G +
Sbjct: 303 NMNVKVFNNVIDAEFKYGLVTKAAETMRRMAE-MGCGPDITTYN----TMINFSCKGGRI 357

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E     E   +   +  +F+   ++ + C+ G    A+ +++ + + G  P LVSY + 
Sbjct: 358 KEADEFLEKAKERGLLPNKFSYTPLMHAYCKQGDYVKAAGMLFRIAEIGEKPDLVSYGAF 417

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +HG+  HG    A  + E+ ++ G  P    Y VL+ GLC        + +L  ML    
Sbjct: 418 IHGVVVHGEIDVALMVREKMMEKGVFPDAQIYNVLMSGLCKNGRFPAMKLLLSEML---- 473

Query: 241 VDRTRICNIYLRALCL---IKNPT--ELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 295
            DR    ++Y+ A  +   I+N    E + +   +++    P ++  N +I GFCK G++
Sbjct: 474 -DRNVQPDVYVFATLMDGFIRNGELDEAIKIFKVIIRKGVDPGIVGYNAMIKGFCKFGKM 532

Query: 296 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN 355
            +AL  LN M      APD  T++T+I G +    +  AL +  Q+M  + + P ++TY 
Sbjct: 533 TDALSCLNKM-KNVHHAPDEYTYSTVIDGYVKQHDMSSALKMFGQMMKHK-FKPNVITYT 590

Query: 356 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP 415
           +++ G  +   +  A++VF  M    +V +  TY  ++ G  ++ + ++A   ++ ++  
Sbjct: 591 SLINGFCKKADMIRAEKVFRGMKSFDLVPNVVTYTTLVGGFFKAGKPEKATSIFELMLMN 650

Query: 416 SNIHDNYVYAAMIKGLCRSGK----IHEA----------VHFLYELVDSGVTPNIVCYNV 461
               ++  +  +I GL  +      I E           + F   ++  G    I  YN 
Sbjct: 651 GCPPNDATFHYLINGLTNTATSPVLIEEKDSMENERSLILDFFTMMLSEGWDQVIAAYNS 710

Query: 462 VIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
           VI   CK  M   A  +L +M   G   D+V +  +  LHG
Sbjct: 711 VIVCLCKHGMVDTAQLLLTKMLTKGFLIDSVCFTAM--LHG 749



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 108/482 (22%), Positives = 222/482 (46%), Gaps = 23/482 (4%)

Query: 26  VPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHC----GVLPNSLTYSVLVRGVLRTRDVE 81
           +P VV+  +L++G  ++G++DVA +++D+M       G + ++ T S++V+G+     +E
Sbjct: 159 LPTVVASNSLLNGLVKSGKVDVALQLYDKMLQTDDGTGAVVDNYTTSIVVKGLCNLGKIE 218

Query: 82  RANVLMFKLWERMKEEEDLSVNNAAFANLV-DSLCREGYVNEVFRIAEDMPQGKSVNEEF 140
               L+   W +        V +  F N++ D  C++G +    R  +++     +    
Sbjct: 219 EGRRLVKDRWGKG------CVPHVVFYNMIIDGYCKKGDLQCATRTLKELKMKGVLPTVE 272

Query: 141 ACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEG 200
             G +I+  C++G      +++  M  RGL  ++  +N+++    K+G   +A + +   
Sbjct: 273 TYGALINGFCKAGEFEAVDQLLTEMAARGLNMNVKVFNNVIDAEFKYGLVTKAAETMRRM 332

Query: 201 IQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIY-----LRALC 255
            + G  P   TY  ++   C    +++A + L+     K  +R  + N +     + A C
Sbjct: 333 AEMGCGPDITTYNTMINFSCKGGRIKEADEFLE-----KAKERGLLPNKFSYTPLMHAYC 387

Query: 256 LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA 315
              +  +   +L  + +   +PD+++    I+G    G I+ AL V   M+  K   PDA
Sbjct: 388 KQGDYVKAAGMLFRIAEIGEKPDLVSYGAFIHGVVVHGEIDVALMVREKMME-KGVFPDA 446

Query: 316 VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN 375
             +  ++ GL   GR   A+ LL   M  R   P +  +  ++ G  R   ++EA ++F 
Sbjct: 447 QIYNVLMSGLCKNGRF-PAMKLLLSEMLDRNVQPDVYVFATLMDGFIRNGELDEAIKIFK 505

Query: 376 CMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG 435
            ++  GV      Y  +I G C+  ++ +A    + +    +  D Y Y+ +I G  +  
Sbjct: 506 VIIRKGVDPGIVGYNAMIKGFCKFGKMTDALSCLNKMKNVHHAPDEYTYSTVIDGYVKQH 565

Query: 436 KIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWR 495
            +  A+    +++     PN++ Y  +I+G CK +    A ++ R M+   L P+ VT+ 
Sbjct: 566 DMSSALKMFGQMMKHKFKPNVITYTSLINGFCKKADMIRAEKVFRGMKSFDLVPNVVTYT 625

Query: 496 IL 497
            L
Sbjct: 626 TL 627



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 108/453 (23%), Positives = 186/453 (41%), Gaps = 91/453 (20%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M   C      +A  + F +   G  P++VSY   IHG    GE+DVA  V ++M   GV
Sbjct: 383 MHAYCKQGDYVKAAGMLFRIAEIGEKPDLVSYGAFIHGVVVHGEIDVALMVREKMMEKGV 442

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P++  Y+VL+ G+ +        +L+ ++ +R     ++  +   FA L+D   R G +
Sbjct: 443 FPDAQIYNVLMSGLCKNGRFPAMKLLLSEMLDR-----NVQPDVYVFATLMDGFIRNGEL 497

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E  +I +                                   V+ ++G+ P +V YN++
Sbjct: 498 DEAIKIFK-----------------------------------VIIRKGVDPGIVGYNAM 522

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G CK G    A   L +     + P E+TY  +++G   + D+  A K+   M+  K 
Sbjct: 523 IKGFCKFGKMTDALSCLNKMKNVHHAPDEYTYSTVIDGYVKQHDMSSALKMFGQMMKHK- 581

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                              +P+VIT  ++INGFCK   +  A K
Sbjct: 582 ----------------------------------FKPNVITYTSLINGFCKKADMIRAEK 607

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           V   M +     P+ VT+TT++ G    G+ ++A + ++++M   G  P   T++ ++ G
Sbjct: 608 VFRGMKSFDL-VPNVVTYTTLVGGFFKAGKPEKATS-IFELMLMNGCPPNDATFHYLING 665

Query: 361 LFRLRR----VEEAK----------EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
           L         +EE            + F  ML  G       Y  VI  LC+   +D A+
Sbjct: 666 LTNTATSPVLIEEKDSMENERSLILDFFTMMLSEGWDQVIAAYNSVIVCLCKHGMVDTAQ 725

Query: 407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
                ++    + D+  + AM+ GLC  GK  E
Sbjct: 726 LLLTKMLTKGFLIDSVCFTAMLHGLCHKGKSKE 758



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 113/251 (45%), Gaps = 5/251 (1%)

Query: 251 LRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKF 310
           L+ L   +   E+  VL  M     +P     + +I  + + G ++ AL++ + +     
Sbjct: 98  LKLLASFRVFPEIELVLENMKAQHLKPTREAFSALILAYGESGSLDRALQLFHTVREMHN 157

Query: 311 CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIV----TYNAVLRGLFRLRR 366
           C P  V   +++ GL+  G++  AL L Y  M Q     G V    T + V++GL  L +
Sbjct: 158 CLPTVVASNSLLNGLVKSGKVDVALQL-YDKMLQTDDGTGAVVDNYTTSIVVKGLCNLGK 216

Query: 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAA 426
           +EE + +     G G V     Y ++IDG C+   L  A R   ++     +     Y A
Sbjct: 217 IEEGRRLVKDRWGKGCVPHVVFYNMIIDGYCKKGDLQCATRTLKELKMKGVLPTVETYGA 276

Query: 427 MIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG 486
           +I G C++G+       L E+   G+  N+  +N VID   K  +  +A + +R M + G
Sbjct: 277 LINGFCKAGEFEAVDQLLTEMAARGLNMNVKVFNNVIDAEFKYGLVTKAAETMRRMAEMG 336

Query: 487 LNPDAVTWRIL 497
             PD  T+  +
Sbjct: 337 CGPDITTYNTM 347



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/258 (23%), Positives = 122/258 (47%), Gaps = 13/258 (5%)

Query: 252 RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA---G 308
           RAL L     E+ N         C P V+  N+++NG  K G+++ AL++ + M+    G
Sbjct: 144 RALQLFHTVREMHN---------CLPTVVASNSLLNGLVKSGKVDVALQLYDKMLQTDDG 194

Query: 309 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE 368
                D  T + ++ GL N+G+I+E   L+      +G  P +V YN ++ G  +   ++
Sbjct: 195 TGAVVDNYTTSIVVKGLCNLGKIEEGRRLVKDRW-GKGCVPHVVFYNMIIDGYCKKGDLQ 253

Query: 369 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI 428
            A      +   GV+    TY  +I+G C++ + +   +   ++       +  V+  +I
Sbjct: 254 CATRTLKELKMKGVLPTVETYGALINGFCKAGEFEAVDQLLTEMAARGLNMNVKVFNNVI 313

Query: 429 KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLN 488
               + G + +A   +  + + G  P+I  YN +I+ +CK    +EA + L + ++ GL 
Sbjct: 314 DAEFKYGLVTKAAETMRRMAEMGCGPDITTYNTMINFSCKGGRIKEADEFLEKAKERGLL 373

Query: 489 PDAVTWRILDKLHGNRGN 506
           P+  ++  L   +  +G+
Sbjct: 374 PNKFSYTPLMHAYCKQGD 391


>gi|224083888|ref|XP_002307160.1| predicted protein [Populus trichocarpa]
 gi|222856609|gb|EEE94156.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 131/526 (24%), Positives = 243/526 (46%), Gaps = 46/526 (8%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           +V +A +L   M+ +    N  ++ +LI+G+ +   +D A  +FD+M+  G  P+   Y 
Sbjct: 150 KVDKACELIETMEEKNVRLNKKTFCSLIYGFVKESRVDKALHLFDKMKKSGFTPDISLYD 209

Query: 69  VLVRGVLRTRDVERANVLM-----FKL-----------------------WERMKEEEDL 100
           V++ G+   +DV++A  L      FK+                       +E M E+ D 
Sbjct: 210 VIIGGLCVNKDVKKALCLYSEMKGFKIQPDVKIVTKLISSFSKEEELTCFFEEMHEDMDP 269

Query: 101 SVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNE----------------EFACGH 144
             +   + ++++SL   G V++ + + + +  G  + +                      
Sbjct: 270 KASTLLYNSVLNSLVDNGSVHKAYHLLQAITIGNCIGDGEIGKLFRGKAMVPPNSTTFSI 329

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
           +I+ L ++G    A  +   M + G  P L+ YN+++ GLC       +  LL+E  + G
Sbjct: 330 VINGLIKTGDLDLAVGLFRDMARIGCKPDLLLYNNLIDGLCTSNRLQESCGLLQEMEESG 389

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL 264
             P+  T   +   LC   D+  A  +L+ M     V   +     ++ LC      E  
Sbjct: 390 IEPTSFTNNCIFGCLCRRHDISGALHLLKKMRIHGHVPWIKHSTSLVKELCKHGKEVEAC 449

Query: 265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 324
             LV M +   QPD++  +  ++G  K+  +++ALK+  D+ A  +C PD + +  +I G
Sbjct: 450 KFLVDMAEEGFQPDIVAYSACLDGLIKIQEVDQALKLFQDICAQGYC-PDVIAYNILIKG 508

Query: 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 384
           L    RI EA NLL++ M ++G  P  VTYN ++ GL +   +EEA    + M+      
Sbjct: 509 LCKTQRIAEAQNLLHE-MEEKGLVPSAVTYNTLIDGLCKTDHLEEAMLFLSMMIEKEREP 567

Query: 385 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFL 444
           +  TY+ +I+GLC + + D+A   W+++        +  Y A I GL   G+ +EA+ +L
Sbjct: 568 NVITYSTLINGLCNAGRPDDALVLWNEMGRKGCTPSSIAYMAFIHGLSNCGRPNEALVYL 627

Query: 445 YELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD 490
            E+ +  + P+   Y  +++     S +  A++IL+EM   G  PD
Sbjct: 628 REMEEREMKPDTYVYVGLLNAFLVDSNQPLAFEILQEMVDKGKFPD 673



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 132/528 (25%), Positives = 211/528 (39%), Gaps = 92/528 (17%)

Query: 19  DMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTR 78
           +M   G   +  + T ++  YC   E D A  VF+E+   G + +   +S+LV    +  
Sbjct: 91  EMHDHGWGFDKYTLTPVLQVYCNMAEFDKALDVFNEIHDRGWV-DEYVFSILVLAFSKWG 149

Query: 79  DVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNE 138
            V++A     +L E M EE+++ +N   F +L+    +E  V++                
Sbjct: 150 KVDKA----CELIETM-EEKNVRLNKKTFCSLIYGFVKESRVDKAL-------------- 190

Query: 139 EFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLE 198
                H+ D                 M+K G TP +  Y+ I+ GLC +    +A  L  
Sbjct: 191 -----HLFDK----------------MKKSGFTPDISLYDVIIGGLCVNKDVKKALCLYS 229

Query: 199 EGIQFGYLPSEHTYKVLVEGLCGESDL------------EKARKVLQFMLSKKDVDRTRI 246
           E   F   P       L+     E +L             KA  +L   +    VD   +
Sbjct: 230 EMKGFKIQPDVKIVTKLISSFSKEEELTCFFEEMHEDMDPKASTLLYNSVLNSLVDNGSV 289

Query: 247 CNIY--LRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
              Y  L+A+ +     +     +F  +    P+  T + VING  K G ++ A+ +  D
Sbjct: 290 HKAYHLLQAITIGNCIGDGEIGKLFRGKAMVPPNSTTFSIVINGLIKTGDLDLAVGLFRD 349

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
           M A   C PD + +  +I GL    R+QE+  LL Q M + G  P   T N +   L R 
Sbjct: 350 M-ARIGCKPDLLLYNNLIDGLCTSNRLQESCGLL-QEMEESGIEPTSFTNNCIFGCLCRR 407

Query: 365 RRVEEA------------------------------KEVFNC-----MLGIGVVADSTTY 389
             +  A                              KEV  C     M   G   D   Y
Sbjct: 408 HDISGALHLLKKMRIHGHVPWIKHSTSLVKELCKHGKEVEACKFLVDMAEEGFQPDIVAY 467

Query: 390 AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449
           +  +DGL +  ++D+A + + DI       D   Y  +IKGLC++ +I EA + L+E+ +
Sbjct: 468 SACLDGLIKIQEVDQALKLFQDICAQGYCPDVIAYNILIKGLCKTQRIAEAQNLLHEMEE 527

Query: 450 SGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            G+ P+ V YN +IDG CK     EA   L  M +    P+ +T+  L
Sbjct: 528 KGLVPSAVTYNTLIDGLCKTDHLEEAMLFLSMMIEKEREPNVITYSTL 575



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 100/473 (21%), Positives = 206/473 (43%), Gaps = 41/473 (8%)

Query: 51  VFDEMRHCGV-LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEED--LSVNNAAF 107
           +FD+++  G+ +PNS +Y+ L+       +V   ++ +  L  R+KE  D     +    
Sbjct: 52  LFDQVQKMGLCVPNSYSYTCLL-------EVLSKSICIDLLEMRLKEMHDHGWGFDKYTL 104

Query: 108 ANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRK 167
             ++   C     ++   +  ++   +   +E+    ++ +  + G+   A  ++  M +
Sbjct: 105 TPVLQVYCNMAEFDKALDVFNEI-HDRGWVDEYVFSILVLAFSKWGKVDKACELIETMEE 163

Query: 168 RGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEK 227
           + +  +  ++ S+++G  K     +A  L ++  + G+ P    Y V++ GLC   D++K
Sbjct: 164 KNVRLNKKTFCSLIYGFVKESRVDKALHLFDKMKKSGFTPDISLYDVIIGGLCVNKDVKK 223

Query: 228 ARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITL--NTV 285
           A  +   M   K     +I    + +     +  E L      +     P   TL  N+V
Sbjct: 224 ALCLYSEMKGFKIQPDVKIVTKLISSF----SKEEELTCFFEEMHEDMDPKASTLLYNSV 279

Query: 286 INGFCKMGRIEEALKVLNDMVAGK---------------FCAPDAVTFTTIIFGLLNVGR 330
           +N     G + +A  +L  +  G                   P++ TF+ +I GL+  G 
Sbjct: 280 LNSLVDNGSVHKAYHLLQAITIGNCIGDGEIGKLFRGKAMVPPNSTTFSIVINGLIKTGD 339

Query: 331 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYA 390
           +  A+ L ++ M + G  P ++ YN ++ GL    R++E+  +   M   G+   S T  
Sbjct: 340 LDLAVGL-FRDMARIGCKPDLLLYNNLIDGLCTSNRLQESCGLLQEMEESGIEPTSFTNN 398

Query: 391 IVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY----AAMIKGLCRSGKIHEAVHFLYE 446
            +   LC  + +  A      +     IH +  +     +++K LC+ GK  EA  FL +
Sbjct: 399 CIFGCLCRRHDISGALHLLKKM----RIHGHVPWIKHSTSLVKELCKHGKEVEACKFLVD 454

Query: 447 LVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
           + + G  P+IV Y+  +DG  K+    +A ++ +++   G  PD + + IL K
Sbjct: 455 MAEEGFQPDIVAYSACLDGLIKIQEVDQALKLFQDICAQGYCPDVIAYNILIK 507



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 114/236 (48%), Gaps = 5/236 (2%)

Query: 3   QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           +LC   +  EA K   DM   G  P++V+Y+  + G  +  E+D A K+F ++   G  P
Sbjct: 438 ELCKHGKEVEACKFLVDMAEEGFQPDIVAYSACLDGLIKIQEVDQALKLFQDICAQGYCP 497

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           + + Y++L++G+ +T+ +  A  L+ ++     EE+ L  +   +  L+D LC+  ++ E
Sbjct: 498 DVIAYNILIKGLCKTQRIAEAQNLLHEM-----EEKGLVPSAVTYNTLIDGLCKTDHLEE 552

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
                  M + +          +I+ LC +GR   A  +   M ++G TPS ++Y + +H
Sbjct: 553 AMLFLSMMIEKEREPNVITYSTLINGLCNAGRPDDALVLWNEMGRKGCTPSSIAYMAFIH 612

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
           GL   G    A   L E  +    P  + Y  L+     +S+   A ++LQ M+ K
Sbjct: 613 GLSNCGRPNEALVYLREMEEREMKPDTYVYVGLLNAFLVDSNQPLAFEILQEMVDK 668



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 102/210 (48%), Gaps = 5/210 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D L  +  V +A KLF D+ ++G+ P+V++Y  LI G C+T  +  A  +  EM   G+
Sbjct: 471 LDGLIKIQEVDQALKLFQDICAQGYCPDVIAYNILIKGLCKTQRIAEAQNLLHEMEEKGL 530

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P+++TY+ L+ G+ +T  +E A + +  + E+ +E      N   ++ L++ LC  G  
Sbjct: 531 VPSAVTYNTLIDGLCKTDHLEEAMLFLSMMIEKEREP-----NVITYSTLINGLCNAGRP 585

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           ++   +  +M +        A    I  L   GR + A   +  M +R + P    Y  +
Sbjct: 586 DDALVLWNEMGRKGCTPSSIAYMAFIHGLSNCGRPNEALVYLREMEEREMKPDTYVYVGL 645

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
           ++          A+++L+E +  G  P  H
Sbjct: 646 LNAFLVDSNQPLAFEILQEMVDKGKFPDLH 675



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 81/313 (25%), Positives = 134/313 (42%), Gaps = 45/313 (14%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC    +  A  L   M+  GHVP +   T+L+   C+ G+   A K   +M   G  P+
Sbjct: 404 LCRRHDISGALHLLKKMRIHGHVPWIKHSTSLVKELCKHGKEVEACKFLVDMAEEGFQPD 463

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            + YS  + G+++ ++V++A     KL++                     +C +GY  +V
Sbjct: 464 IVAYSACLDGLIKIQEVDQA----LKLFQ--------------------DICAQGYCPDV 499

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
                            A   +I  LC++ R   A  +++ M ++GL PS V+YN+++ G
Sbjct: 500 ----------------IAYNILIKGLCKTQRIAEAQNLLHEMEEKGLVPSAVTYNTLIDG 543

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LCK      A   L   I+    P+  TY  L+ GLC     + A  VL   + +K    
Sbjct: 544 LCKTDHLEEAMLFLSMMIEKEREPNVITYSTLINGLCNAGRPDDAL-VLWNEMGRKGCTP 602

Query: 244 TRICNI-YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
           + I  + ++  L     P E L  L  M + + +PD      ++N F        A ++L
Sbjct: 603 SSIAYMAFIHGLSNCGRPNEALVYLREMEEREMKPDTYVYVGLLNAFLVDSNQPLAFEIL 662

Query: 303 NDMV-AGKFCAPD 314
            +MV  GKF  PD
Sbjct: 663 QEMVDKGKF--PD 673


>gi|297836398|ref|XP_002886081.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331921|gb|EFH62340.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 743

 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 125/491 (25%), Positives = 245/491 (49%), Gaps = 18/491 (3%)

Query: 10  VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEM-RHCGVLPNSLTYS 68
           +  A ++F DM   G   +V ++  L++GYC  G+++ A  + + M     V P+++TY+
Sbjct: 185 IASAREVFDDMVKIGVSLDVKTFNVLVNGYCLEGKLEDALGMLERMVSEFNVNPDNVTYN 244

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
            +++ + +   +     L+  +     +   L  N   + NLV   C+ G + E F+I E
Sbjct: 245 TILKAMSKKGRLSDVKDLLLDM-----KRNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVE 299

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
            M Q   + +      +I+ +C +G       ++ VM+   L P +V+YN+++ G  + G
Sbjct: 300 LMKQTNILPDLCTYNILINGVCNAGSIREGLELMDVMKSLKLQPDVVTYNTLIDGCFELG 359

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEK-ARKVLQFM----LSKKDVDR 243
             + A +L+E+    G  P++ T+ + ++ LC E   E+  RKV + +     S   V  
Sbjct: 360 LSLEAKKLMEQMENDGVKPNQVTHNISLKWLCKEEKREEVTRKVKELVEMHGFSPDIVTY 419

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
             +   YL+    + + +  L ++  M Q   + + ITLNT+++  CK  +++EA  +L+
Sbjct: 420 HTLIKAYLK----VGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKVDEAHNLLD 475

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
                 +   D VT+ T+I G     ++++A  + +  M +   +P + T+N+++ GL  
Sbjct: 476 SAHKRGYIV-DEVTYGTLIMGYFREEKVEKAFEM-WDEMKRIKITPTVTTFNSLIGGLCH 533

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
             + E A E F+ +   G++ D  T+  +I G C+  ++++A  F+++ +  S   DNY 
Sbjct: 534 HGKTELAMEKFDELAESGLLPDDCTFNSIILGYCKEGRVEKAFEFYNESIKHSFKPDNYT 593

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
              ++ GLC+ G   +A++F   L+      + V YN +I   CK    +EAY +L EM 
Sbjct: 594 CNILLNGLCKEGMTEKALNFFNTLITEREV-DTVTYNTMISAFCKDKKLKEAYDLLSEME 652

Query: 484 KNGLNPDAVTW 494
           +  L PD  T+
Sbjct: 653 EKRLEPDRFTY 663



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 123/477 (25%), Positives = 220/477 (46%), Gaps = 14/477 (2%)

Query: 27  PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVL 86
           P+   +   +  Y   G+  VA +VF +M    + PN LT + L+ G++R          
Sbjct: 129 PSKALFDIALSAYLHAGKPHVALQVFQKMIRLKLKPNLLTCNTLLIGLVRYPSS------ 182

Query: 87  MFKLWERMKEEEDL-----SVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVN-EEF 140
            F +    +  +D+     S++   F  LV+  C EG + +   + E M    +VN +  
Sbjct: 183 -FSIASAREVFDDMVKIGVSLDVKTFNVLVNGYCLEGKLEDALGMLERMVSEFNVNPDNV 241

Query: 141 ACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEG 200
               ++ ++ + GR      ++  M++ GL P+ V+YN++V+G CK G    A+Q++E  
Sbjct: 242 TYNTILKAMSKKGRLSDVKDLLLDMKRNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELM 301

Query: 201 IQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNP 260
            Q   LP   TY +L+ G+C    + +  +++  M S K        N  +     +   
Sbjct: 302 KQTNILPDLCTYNILINGVCNAGSIREGLELMDVMKSLKLQPDVVTYNTLIDGCFELGLS 361

Query: 261 TELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTT 320
            E   ++  M     +P+ +T N  +   CK  + EE  + + ++V     +PD VT+ T
Sbjct: 362 LEAKKLMEQMENDGVKPNQVTHNISLKWLCKEEKREEVTRKVKELVEMHGFSPDIVTYHT 421

Query: 321 IIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI 380
           +I   L VG +  AL ++ + M Q+G     +T N +L  L + R+V+EA  + +     
Sbjct: 422 LIKAYLKVGDLSGALEMMRE-MGQKGIKMNTITLNTILDALCKERKVDEAHNLLDSAHKR 480

Query: 381 GVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEA 440
           G + D  TY  +I G     ++++A   WD++           + ++I GLC  GK   A
Sbjct: 481 GYIVDEVTYGTLIMGYFREEKVEKAFEMWDEMKRIKITPTVTTFNSLIGGLCHHGKTELA 540

Query: 441 VHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           +    EL +SG+ P+   +N +I G CK     +A++   E  K+   PD  T  IL
Sbjct: 541 MEKFDELAESGLLPDDCTFNSIILGYCKEGRVEKAFEFYNESIKHSFKPDNYTCNIL 597



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 118/468 (25%), Positives = 204/468 (43%), Gaps = 71/468 (15%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           R+ +   L  DMK  G VPN V+Y  L++GYC+ G +  A+++ + M+   +LP+  TY+
Sbjct: 255 RLSDVKDLLLDMKRNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTNILPDLCTYN 314

Query: 69  VLVRGV---------LRTRDVERA-----NVLMF-----------------KLWERMKEE 97
           +L+ GV         L   DV ++     +V+ +                 KL E+M E 
Sbjct: 315 ILINGVCNAGSIREGLELMDVMKSLKLQPDVVTYNTLIDGCFELGLSLEAKKLMEQM-EN 373

Query: 98  EDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGH-MIDSLCRSGRNH 156
           + +  N       +  LC+E    EV R  +++ +    + +    H +I +  + G   
Sbjct: 374 DGVKPNQVTHNISLKWLCKEEKREEVTRKVKELVEMHGFSPDIVTYHTLIKAYLKVGDLS 433

Query: 157 GASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLV 216
           GA  ++  M ++G+  + ++ N+I+  LCK      A+ LL+   + GY+  E TY  L+
Sbjct: 434 GALEMMREMGQKGIKMNTITLNTILDALCKERKVDEAHNLLDSAHKRGYIVDEVTYGTLI 493

Query: 217 EGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQ 276
            G   E  +EKA ++        ++ R +I                              
Sbjct: 494 MGYFREEKVEKAFEMWD------EMKRIKIT----------------------------- 518

Query: 277 PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALN 336
           P V T N++I G C  G+ E A++  +++       PD  TF +II G    GR+++A  
Sbjct: 519 PTVTTFNSLIGGLCHHGKTELAMEKFDELAESGLL-PDDCTFNSIILGYCKEGRVEKAFE 577

Query: 337 LLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 396
             Y    +  + P   T N +L GL +    E+A   FN ++    V D+ TY  +I   
Sbjct: 578 -FYNESIKHSFKPDNYTCNILLNGLCKEGMTEKALNFFNTLITEREV-DTVTYNTMISAF 635

Query: 397 CESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFL 444
           C+  +L EA     ++       D + Y ++I  L   GK+ EA   L
Sbjct: 636 CKDKKLKEAYDLLSEMEEKRLEPDRFTYNSIITSLMEDGKLSEADELL 683



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 107/440 (24%), Positives = 189/440 (42%), Gaps = 62/440 (14%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           +C    + E  +L   MKS    P+VV+Y TLI G    G    A K+ ++M + GV PN
Sbjct: 320 VCNAGSIREGLELMDVMKSLKLQPDVVTYNTLIDGCFELGLSLEAKKLMEQMENDGVKPN 379

Query: 64  S------------------------------------LTYSVLVRGVLRTRDVERANVLM 87
                                                +TY  L++  L+  D+  A  +M
Sbjct: 380 QVTHNISLKWLCKEEKREEVTRKVKELVEMHGFSPDIVTYHTLIKAYLKVGDLSGALEMM 439

Query: 88  FKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMID 147
            ++ ++      + +N      ++D+LC+E  V+E   + +   +   + +E   G +I 
Sbjct: 440 REMGQK-----GIKMNTITLNTILDALCKERKVDEAHNLLDSAHKRGYIVDEVTYGTLIM 494

Query: 148 SLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLP 207
              R  +   A  +   M++  +TP++ ++NS++ GLC HG    A +  +E  + G LP
Sbjct: 495 GYFREEKVEKAFEMWDEMKRIKITPTVTTFNSLIGGLCHHGKTELAMEKFDELAESGLLP 554

Query: 208 SEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALC---LIKNPTELL 264
            + T+  ++ G C E  +EKA +     +          CNI L  LC   + +      
Sbjct: 555 DDCTFNSIILGYCKEGRVEKAFEFYNESIKHSFKPDNYTCNILLNGLCKEGMTEKALNFF 614

Query: 265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 324
           N L+    T+ + D +T NT+I+ FCK  +++EA  +L++M   K   PD  T+ +II  
Sbjct: 615 NTLI----TEREVDTVTYNTMISAFCKDKKLKEAYDLLSEM-EEKRLEPDRFTYNSIITS 669

Query: 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 384
           L+  G++ EA  LL +   + G              + R   +E  K          +  
Sbjct: 670 LMEDGKLSEADELLKKFSGKFG-------------SMKRNLHLETEKNPATSESKEELKT 716

Query: 385 DSTTYAIVIDGLCESNQLDE 404
           ++  Y+ VI+ LC   +L E
Sbjct: 717 EAIAYSDVINELCSRGRLKE 736



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 138/300 (46%), Gaps = 24/300 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   +V EAH L      RG++ + V+Y TLI GY R  +++ A++++DEM+   +
Sbjct: 458 LDALCKERKVDEAHNLLDSAHKRGYIVDEVTYGTLIMGYFREEKVEKAFEMWDEMKRIKI 517

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKE--EEDLSVNNAAFANLVDSLCREG 118
            P   T++ L+ G+      E A        E+  E  E  L  ++  F +++   C+EG
Sbjct: 518 TPTVTTFNSLIGGLCHHGKTELA-------MEKFDELAESGLLPDDCTFNSIILGYCKEG 570

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVV-YVMRKRGLTPSLVSY 177
            V + F    +  +     + + C  +++ LC+ G    A      ++ +R +    V+Y
Sbjct: 571 RVEKAFEFYNESIKHSFKPDNYTCNILLNGLCKEGMTEKALNFFNTLITEREV--DTVTY 628

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
           N+++   CK      AY LL E  +    P   TY  ++  L  +  L +A ++L+   S
Sbjct: 629 NTMISAFCKDKKLKEAYDLLSEMEEKRLEPDRFTYNSIITSLMEDGKLSEADELLK-KFS 687

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
            K     R  N++L      KNP    +      + + + + I  + VIN  C  GR++E
Sbjct: 688 GKFGSMKR--NLHLET---EKNPATSES------KEELKTEAIAYSDVINELCSRGRLKE 736


>gi|224713524|gb|ACN62069.1| PPR-814c [Zea mays]
          Length = 814

 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 128/496 (25%), Positives = 240/496 (48%), Gaps = 23/496 (4%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC    + +A      M ++  +PN  +Y  LI+GY  TG+   A +VF EMR   +LP+
Sbjct: 264 LCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPD 323

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVN-----NAAFANLVDSLCREG 118
            +T S+L+  + +   ++ A  +   +  + +  +  S N      A    LVD      
Sbjct: 324 VVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVD------ 377

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGH-MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
            + ++F    D+  G  +  +F   + +I +    G    A  +   MR  G+ P +V+Y
Sbjct: 378 -MTDLF----DLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTY 432

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVL-QFML 236
            +++  LC+ G    A +   + I  G  P ++ Y  L++G C    L KA++++ + M 
Sbjct: 433 RTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMN 492

Query: 237 SKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIE 296
           +   +D     +I +  LC +    +  N+    +     PD +  + +++G+C +G++E
Sbjct: 493 NGMHLDIVFFSSI-INNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKME 551

Query: 297 EALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
           +AL+V + MV+     P+ V + T++ G   +GRI E L+ L++ M QRG  P  + Y+ 
Sbjct: 552 KALRVFDAMVSAGI-EPNVVVYCTLVNGYCKIGRIDEGLS-LFREMLQRGIKPSTILYSI 609

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416
           ++ GLF+  R   AK  F+ M   G+  D  TY IV+ GL ++   DEA   + ++    
Sbjct: 610 IIDGLFQAGRTVPAKVKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKEL-RAM 668

Query: 417 NIHDNYV-YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREA 475
           N+  N +    MI G+ ++ ++ EA      +  S + P++V Y+++I    K  +  EA
Sbjct: 669 NVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPSVVTYSIMITNLIKEGLVEEA 728

Query: 476 YQILREMRKNGLNPDA 491
             +   M+  G  P++
Sbjct: 729 EDMFSSMQNAGCEPNS 744



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 131/537 (24%), Positives = 238/537 (44%), Gaps = 50/537 (9%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHV--PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHC 58
           +  LC   + G+A  L   M   G V  PNVV+Y T+I G+ + G+++ A  +F EM   
Sbjct: 189 LKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQR 248

Query: 59  GVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREG 118
           G+ P+ +TY+ +V  + + R +++A   +     R    + +  NN  + NL+      G
Sbjct: 249 GIPPDLVTYNSVVHALCKARAMDKAEAFL-----RQMVNKRVLPNNWTYNNLIYGYSSTG 303

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
              E  R+ ++M +   + +      ++ SLC+ G+   A  V   M  +G  P + SYN
Sbjct: 304 QWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYN 363

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS- 237
            +++G    G  +    L +  +  G  P  +T+ VL++       L+KA  +   M   
Sbjct: 364 IMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDH 423

Query: 238 --KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPD----------------- 278
             K DV   R     + ALC I    + +     M+     PD                 
Sbjct: 424 GVKPDVVTYRTV---IAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSL 480

Query: 279 ------------------VITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTT 320
                             ++  +++IN  CK+GR+ +A  +  D+       PDAV ++ 
Sbjct: 481 LKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIF-DLTVNVGLHPDAVVYSM 539

Query: 321 IIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI 380
           ++ G   VG++++AL + +  M   G  P +V Y  ++ G  ++ R++E   +F  ML  
Sbjct: 540 LMDGYCLVGKMEKALRV-FDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQR 598

Query: 381 GVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEA 440
           G+   +  Y+I+IDGL ++ +   AK  + ++       D   Y  +++GL ++    EA
Sbjct: 599 GIKPSTILYSIIIDGLFQAGRTVPAKVKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEA 658

Query: 441 VHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           +    EL    V  NI+  N +IDG  +     EA  +   + ++ L P  VT+ I+
Sbjct: 659 IFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPSVVTYSIM 715



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 127/490 (25%), Positives = 226/490 (46%), Gaps = 15/490 (3%)

Query: 13  AHKLFFDMKSRGHVPNVVS-----YTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTY 67
           A  LF    SR   P V+S     Y  L+    R    ++A   F ++   G+  N +  
Sbjct: 90  AVALFNRAASRAQGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIA 149

Query: 68  SVLVRGVLRTRDVERA-NVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRI 126
           + L+ G    +  + A ++L+ +  E     +  S     ++ L+ SLC +G   +   +
Sbjct: 150 NHLLEGFCEAKRTDEALDILLHRTPELGCVPDVFS-----YSILLKSLCDQGKSGQADDL 204

Query: 127 AEDMPQGKSVNEE--FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
              M +G +V      A   +ID   + G  + A  +   M +RG+ P LV+YNS+VH L
Sbjct: 205 LRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHAL 264

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
           CK     +A   L + +    LP+  TY  L+ G       ++A +V + M     +   
Sbjct: 265 CKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDV 324

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
              ++ + +LC      E  +V   M      PDV + N ++NG+   G + + +  L D
Sbjct: 325 VTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVD-MTDLFD 383

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
           ++ G   APD  TF  +I    N G + +A+ +++  M   G  P +VTY  V+  L R+
Sbjct: 384 LMLGDGIAPDFYTFNVLIKAYANCGMLDKAM-IIFNEMRDHGVKPDVVTYRTVIAALCRI 442

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY 424
            ++++A E FN M+  GV  D   Y  +I G C    L +AK    +I+      D   +
Sbjct: 443 GKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFF 502

Query: 425 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484
           +++I  LC+ G++ +A +     V+ G+ P+ V Y++++DG C +    +A ++   M  
Sbjct: 503 SSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVS 562

Query: 485 NGLNPDAVTW 494
            G+ P+ V +
Sbjct: 563 AGIEPNVVVY 572



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 121/506 (23%), Positives = 227/506 (44%), Gaps = 42/506 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M  LC   ++ EA  +F  M  +G  P+V SY  +++GY   G +     +FD M   G+
Sbjct: 331 MGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGI 390

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+  T++VL++       +++A ++  ++      +  +  +   +  ++ +LCR G +
Sbjct: 391 APDFYTFNVLIKAYANCGMLDKAMIIFNEM-----RDHGVKPDVVTYRTVIAALCRIGKM 445

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           ++       M       +++A   +I   C  G    A  ++  +   G+   +V ++SI
Sbjct: 446 DDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSI 505

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++ LCK G  M A  + +  +  G  P    Y +L++G C    +EKA +V   M+S   
Sbjct: 506 INNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVS--- 562

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                              +P+V+   T++NG+CK+GRI+E L 
Sbjct: 563 --------------------------------AGIEPNVVVYCTLVNGYCKIGRIDEGLS 590

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +  +M+  +   P  + ++ II GL   GR   A  + +  M + G +  I TYN VLRG
Sbjct: 591 LFREMLQ-RGIKPSTILYSIIIDGLFQAGRTVPA-KVKFHEMTESGIAMDICTYNIVLRG 648

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           LF+ R  +EA  +F  +  + V  +  T   +IDG+ ++ +++EAK  +  I     +  
Sbjct: 649 LFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPS 708

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              Y+ MI  L + G + EA      + ++G  PN    N V+    K +    A   L 
Sbjct: 709 VVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVRELLKKNEIVRAGAYLS 768

Query: 481 EMRKNGLNPDAVTWRILDKLHGNRGN 506
           ++ +   + + +T  +L  L  ++G 
Sbjct: 769 KIDERNFSLEHLTTMLLVDLFSSKGT 794



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 118/439 (26%), Positives = 209/439 (47%), Gaps = 10/439 (2%)

Query: 62  PNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVN 121
           P S TY++L+    R    E A     +L         L VN     +L++  C     +
Sbjct: 109 PTSHTYAILMDCCTRAHRPELALAFFGQLLR-----TGLRVNIIIANHLLEGFCEAKRTD 163

Query: 122 EVFRIA-EDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGL--TPSLVSYN 178
           E   I     P+   V + F+   ++ SLC  G++  A  ++ +M + G   +P++V+YN
Sbjct: 164 EALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYN 223

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
           +++ G  K G   +A  L +E +Q G  P   TY  +V  LC    ++KA   L+ M++K
Sbjct: 224 TVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNK 283

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
           + +      N  +          E + V   M +    PDV+TL+ ++   CK G+I+EA
Sbjct: 284 RVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEA 343

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
             V  D +A K   PD  ++  ++ G    G + +  +L + +M   G +P   T+N ++
Sbjct: 344 RDVF-DTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDL-FDLMLGDGIAPDFYTFNVLI 401

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
           +       +++A  +FN M   GV  D  TY  VI  LC   ++D+A   ++ ++     
Sbjct: 402 KAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVA 461

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI 478
            D Y Y  +I+G C  G + +A   + E++++G+  +IV ++ +I+  CKL    +A  I
Sbjct: 462 PDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNI 521

Query: 479 LREMRKNGLNPDAVTWRIL 497
                  GL+PDAV + +L
Sbjct: 522 FDLTVNVGLHPDAVVYSML 540



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 125/238 (52%), Gaps = 3/238 (1%)

Query: 270 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG 329
           +L+T  + ++I  N ++ GFC+  R +EAL +L        C PD  +++ ++  L + G
Sbjct: 137 LLRTGLRVNIIIANHLLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQG 196

Query: 330 RIQEALNLLYQVMPQRGY--SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADST 387
           +  +A +LL ++M + G   SP +V YN V+ G F+   V +A ++F  M+  G+  D  
Sbjct: 197 KSGQADDLL-RMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLV 255

Query: 388 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYEL 447
           TY  V+  LC++  +D+A+ F   +V    + +N+ Y  +I G   +G+  EAV    E+
Sbjct: 256 TYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEM 315

Query: 448 VDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
               + P++V  ++++   CK    +EA  +   M   G NPD  ++ I+   +  +G
Sbjct: 316 RRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKG 373



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 61/125 (48%), Gaps = 5/125 (4%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D +    RV EA  LF  +     VP+VV+Y+ +I    + G ++ A  +F  M++ G 
Sbjct: 681 IDGMFQTRRVEEAKDLFASISRSRLVPSVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGC 740

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PNS   + +VR +L+  ++ RA   + K+ ER     + S+ +     LVD    +G  
Sbjct: 741 EPNSRLLNHVVRELLKKNEIVRAGAYLSKIDER-----NFSLEHLTTMLLVDLFSSKGTC 795

Query: 121 NEVFR 125
            E  R
Sbjct: 796 REHIR 800


>gi|125590530|gb|EAZ30880.1| hypothetical protein OsJ_14954 [Oryza sativa Japonica Group]
          Length = 442

 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 120/457 (26%), Positives = 219/457 (47%), Gaps = 51/457 (11%)

Query: 27  PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVL 86
           PN  +Y  LIH  C  G++  A  V D+M   G  P+ +TY++L+    + R   +A   
Sbjct: 5   PNAYTYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQA--- 61

Query: 87  MFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMI 146
             +L + M+  E  + NN  +  L+D +C EG V++   +  ++P             ++
Sbjct: 62  -MELIDLMR-AEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVL 119

Query: 147 DSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL 206
             LC + R   A  +V  M +    P+  ++N +++ LC+ G   +A QLLE+  + G  
Sbjct: 120 KGLCSAERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCT 179

Query: 207 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 266
            +  TY  ++ GLC + +++ A  +L  M S                             
Sbjct: 180 ANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYG--------------------------- 212

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
                   C+PD++T NT++ G C   R  +A +++++M     C PD VTF T+I  L 
Sbjct: 213 --------CKPDIVTYNTLLKGLCSAARWVDAEELMDNMTQNG-CLPDNVTFNTLIGFLC 263

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
             G + +A+ +  Q MP +G +P  +TY+ ++ GL +  ++++A E+FN M   G   D 
Sbjct: 264 QKGLMVDAIEVFKQ-MPDKGCTPNSITYSTIISGLAKATKLDQALELFNEMGHKGFNPDK 322

Query: 387 TTYAIVIDGLCESNQLDEA----KRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVH 442
             Y ++ + L + + ++EA    ++  D  + P  +    +Y A++ GLCR+GK   A+ 
Sbjct: 323 -IYQLLAECLNDDDTIEEAIQTVRKLQDSGISPHTV----LYNAILLGLCRNGKTEFAID 377

Query: 443 FLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
            +  +V SG  P+ + Y ++I+G        EA ++L
Sbjct: 378 IMAYMVSSGCMPDDLTYVILIEGLAYEGYLNEARELL 414



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 99/348 (28%), Positives = 170/348 (48%), Gaps = 37/348 (10%)

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
           +I +LC  G+   A  V+  M  RG  P +V+YN ++   CK  G  +A +L++     G
Sbjct: 13  LIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAMELIDLMRAEG 72

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL 264
             P+  TY VL++G+CGE D++ A ++L+ + S                           
Sbjct: 73  CTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHG------------------------- 107

Query: 265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 324
                     C+P  +  NTV+ G C   R  +A +++ +M+  + C P+  TF  +I+ 
Sbjct: 108 ----------CKPSTVNYNTVLKGLCSAERWGDADELVTEMLR-ENCPPNEATFNVVIYS 156

Query: 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 384
           L   G +Q+A+ LL + M + G +  IVTYNA++ GL   R V+ A  + + M   G   
Sbjct: 157 LCRKGLLQQAIQLL-EKMSKHGCTANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKP 215

Query: 385 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFL 444
           D  TY  ++ GLC + +  +A+   D++     + DN  +  +I  LC+ G + +A+   
Sbjct: 216 DIVTYNTLLKGLCSAARWVDAEELMDNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVF 275

Query: 445 YELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAV 492
            ++ D G TPN + Y+ +I G  K +   +A ++  EM   G NPD +
Sbjct: 276 KQMPDKGCTPNSITYSTIISGLAKATKLDQALELFNEMGHKGFNPDKI 323



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 107/395 (27%), Positives = 193/395 (48%), Gaps = 3/395 (0%)

Query: 103 NNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVV 162
           N   +  L+ +LC  G V +   + +DM       +      ++++ C+      A  ++
Sbjct: 6   NAYTYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAMELI 65

Query: 163 YVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGE 222
            +MR  G TP+ V+YN ++ G+C  G    A +LL      G  PS   Y  +++GLC  
Sbjct: 66  DLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLCSA 125

Query: 223 SDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITL 282
                A +++  ML +         N+ + +LC      + + +L  M +  C  +++T 
Sbjct: 126 ERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTY 185

Query: 283 NTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVM 342
           N +ING C+   ++ A+ +L+ M     C PD VT+ T++ GL +  R  +A  L+   M
Sbjct: 186 NAIINGLCEQRNVDGAMGLLSKM-KSYGCKPDIVTYNTLLKGLCSAARWVDAEELMDN-M 243

Query: 343 PQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQL 402
            Q G  P  VT+N ++  L +   + +A EVF  M   G   +S TY+ +I GL ++ +L
Sbjct: 244 TQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKATKL 303

Query: 403 DEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVV 462
           D+A   ++++      + + +Y  + + L     I EA+  + +L DSG++P+ V YN +
Sbjct: 304 DQALELFNEM-GHKGFNPDKIYQLLAECLNDDDTIEEAIQTVRKLQDSGISPHTVLYNAI 362

Query: 463 IDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           + G C+      A  I+  M  +G  PD +T+ IL
Sbjct: 363 LLGLCRNGKTEFAIDIMAYMVSSGCMPDDLTYVIL 397



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 116/405 (28%), Positives = 194/405 (47%), Gaps = 8/405 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   +V +A  +  DM  RG  P+VV+Y  L+   C+      A ++ D MR  G  PN
Sbjct: 17  LCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAMELIDLMRAEGCTPN 76

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           ++TY+VL+ G+    DV+ A  L+  L     +   ++ N      ++  LC      + 
Sbjct: 77  NVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNT-----VLKGLCSAERWGDA 131

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             +  +M +      E     +I SLCR G    A +++  M K G T ++V+YN+I++G
Sbjct: 132 DELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIING 191

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LC+      A  LL +   +G  P   TY  L++GLC  +    A +++  M     +  
Sbjct: 192 LCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAARWVDAEELMDNMTQNGCLPD 251

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               N  +  LC      + + V   M    C P+ IT +T+I+G  K  ++++AL++ N
Sbjct: 252 NVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKATKLDQALELFN 311

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           +M    F  PD + +  +   L +   I+EA+  + + +   G SP  V YNA+L GL R
Sbjct: 312 EMGHKGF-NPDKI-YQLLAECLNDDDTIEEAIQTVRK-LQDSGISPHTVLYNAILLGLCR 368

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRF 408
             + E A ++   M+  G + D  TY I+I+GL     L+EA+  
Sbjct: 369 NGKTEFAIDIMAYMVSSGCMPDDLTYVILIEGLAYEGYLNEAREL 413



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 83/343 (24%), Positives = 161/343 (46%), Gaps = 11/343 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           MD +CG   V +A +L  ++ S G  P+ V+Y T++ G C       A ++  EM     
Sbjct: 84  MDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGDADELVTEMLRENC 143

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN  T++V++  + R   +++A     +L E+M  +   + N   +  +++ LC +  V
Sbjct: 144 PPNEATFNVVIYSLCRKGLLQQA----IQLLEKMS-KHGCTANIVTYNAIINGLCEQRNV 198

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +    +   M       +      ++  LC + R   A  ++  M + G  P  V++N++
Sbjct: 199 DGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAARWVDAEELMDNMTQNGCLPDNVTFNTL 258

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +  LC+ G  + A ++ ++    G  P+  TY  ++ GL   + L++A ++   M   K 
Sbjct: 259 IGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKATKLDQALELFNEM-GHKG 317

Query: 241 VDRTRICNIYLRALCLIKNPT--ELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
            +  +I    L A CL  + T  E +  +  +  +   P  +  N ++ G C+ G+ E A
Sbjct: 318 FNPDKI--YQLLAECLNDDDTIEEAIQTVRKLQDSGISPHTVLYNAILLGLCRNGKTEFA 375

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQV 341
           + ++  MV+   C PD +T+  +I GL   G + EA  LL ++
Sbjct: 376 IDIMAYMVSSG-CMPDDLTYVILIEGLAYEGYLNEARELLIKL 417



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 118/241 (48%), Gaps = 7/241 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC    V  A  L   MKS G  P++V+Y TL+ G C       A ++ D M   G 
Sbjct: 189 INGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAARWVDAEELMDNMTQNGC 248

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           LP+++T++ L+ G L  + +    + +FK       ++  + N+  ++ ++  L +   +
Sbjct: 249 LPDNVTFNTLI-GFLCQKGLMVDAIEVFK----QMPDKGCTPNSITYSTIISGLAKATKL 303

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           ++   +  +M   K  N +     + + L        A + V  ++  G++P  V YN+I
Sbjct: 304 DQALELFNEMGH-KGFNPDKIYQLLAECLNDDDTIEEAIQTVRKLQDSGISPHTVLYNAI 362

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GLC++G    A  ++   +  G +P + TY +L+EGL  E  L +AR++L   L  +D
Sbjct: 363 LLGLCRNGKTEFAIDIMAYMVSSGCMPDDLTYVILIEGLAYEGYLNEARELL-IKLCSRD 421

Query: 241 V 241
           V
Sbjct: 422 V 422



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 57/118 (48%)

Query: 382 VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAV 441
           V  ++ TY  +I  LCE  Q+ +A    DD++      D   Y  +++  C+     +A+
Sbjct: 3   VQPNAYTYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAM 62

Query: 442 HFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
             +  +   G TPN V YNV++DG C      +A ++LR +  +G  P  V +  + K
Sbjct: 63  ELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLK 120


>gi|224133106|ref|XP_002327962.1| predicted protein [Populus trichocarpa]
 gi|222837371|gb|EEE75750.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 107/391 (27%), Positives = 201/391 (51%), Gaps = 2/391 (0%)

Query: 107 FANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMR 166
           F  L+ +L R  +   V  +++ +   +   + F    +I+   R  R   A  V+  + 
Sbjct: 87  FDKLLSALVRIKHYGTVLSLSKRIELLRIERDVFHFNILINCFSRLQRVDFAFSVLGKII 146

Query: 167 KRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLE 226
           K G  P  V+++S+++GLC      RA +  +E +  GY P+ HTY  +++G C      
Sbjct: 147 KLGFEPDAVTFSSLINGLCFEDKFARAMEFFDEMVASGYQPNLHTYNTIIKGFCKIGKTT 206

Query: 227 KARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVI 286
            A  +L+ M          I N  +  LC  +  +E L++   +     +PDV T + ++
Sbjct: 207 VAVGLLKKMDKAGGRPDIVIYNTIIDGLCKDRLVSEALDIFSEIKGKGVRPDVFTYSILM 266

Query: 287 NGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
           +G C   + EEA  + N+M++     PD VTF  ++  L   G + EA  ++ ++M ++G
Sbjct: 267 HGLCNSDQKEEASALFNEMMSLNI-MPDVVTFNILVDKLCKEGMLSEAQGII-KIMIEKG 324

Query: 347 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
             P   TYN+++ G     +V EA+ VF+ M+  G + +  +Y I+I+G C++ ++DEA+
Sbjct: 325 VEPNYATYNSLMNGYCLQNKVFEARMVFDAMITKGCMPNVVSYNILINGYCKAQRIDEAR 384

Query: 407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466
             +D++ +   I + + Y  +I GLC++G+  EA     ++   G +P++V   +++D  
Sbjct: 385 ELFDEMSFRGLIPNTFNYNTLISGLCQAGRHCEARELFKDMQAQGCSPDLVTCTILLDSL 444

Query: 467 CKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           CKL     A ++ R M+ + L P+ VT+ IL
Sbjct: 445 CKLGYLDNALRLFRAMQDSCLKPNLVTYDIL 475



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 104/459 (22%), Positives = 203/459 (44%), Gaps = 42/459 (9%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C L+ + +A   F  M  +  +P +V +  L+    R         +   +    +  + 
Sbjct: 60  CSLTNIEDALFSFNHMIHKHPLPCIVEFDKLLSALVRIKHYGTVLSLSKRIELLRIERDV 119

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
             +++L+    R + V+ A  ++ K+ +   E + ++     F++L++ LC E       
Sbjct: 120 FHFNILINCFSRLQRVDFAFSVLGKIIKLGFEPDAVT-----FSSLINGLCFEDKFARAM 174

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
              ++M              +I   C+ G+   A  ++  M K G  P +V YN+I+ GL
Sbjct: 175 EFFDEMVASGYQPNLHTYNTIIKGFCKIGKTTVAVGLLKKMDKAGGRPDIVIYNTIIDGL 234

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
           CK      A  +  E    G  P   TY +L+ GLC     E+A  +   M+S       
Sbjct: 235 CKDRLVSEALDIFSEIKGKGVRPDVFTYSILMHGLCNSDQKEEASALFNEMMS------- 287

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
                              LN++         PDV+T N +++  CK G + EA  ++  
Sbjct: 288 -------------------LNIM---------PDVVTFNILVDKLCKEGMLSEAQGIIKI 319

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
           M+  K   P+  T+ +++ G     ++ EA  +++  M  +G  P +V+YN ++ G  + 
Sbjct: 320 MIE-KGVEPNYATYNSLMNGYCLQNKVFEA-RMVFDAMITKGCMPNVVSYNILINGYCKA 377

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY 424
           +R++EA+E+F+ M   G++ ++  Y  +I GLC++ +  EA+  + D+       D    
Sbjct: 378 QRIDEARELFDEMSFRGLIPNTFNYNTLISGLCQAGRHCEARELFKDMQAQGCSPDLVTC 437

Query: 425 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463
             ++  LC+ G +  A+     + DS + PN+V Y+++I
Sbjct: 438 TILLDSLCKLGYLDNALRLFRAMQDSCLKPNLVTYDILI 476



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 100/362 (27%), Positives = 177/362 (48%), Gaps = 9/362 (2%)

Query: 7   LSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLT 66
           L RV  A  +   +   G  P+ V++++LI+G C   +   A + FDEM   G  PN  T
Sbjct: 132 LQRVDFAFSVLGKIIKLGFEPDAVTFSSLINGLCFEDKFARAMEFFDEMVASGYQPNLHT 191

Query: 67  YSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRI 126
           Y+ +++G  +      A V + K  ++     D+ + N     ++D LC++  V+E   I
Sbjct: 192 YNTIIKGFCKIGKTTVA-VGLLKKMDKAGGRPDIVIYNT----IIDGLCKDRLVSEALDI 246

Query: 127 AEDMPQGKSVNEE-FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLC 185
             ++ +GK V  + F    ++  LC S +   AS +   M    + P +V++N +V  LC
Sbjct: 247 FSEI-KGKGVRPDVFTYSILMHGLCNSDQKEEASALFNEMMSLNIMPDVVTFNILVDKLC 305

Query: 186 KHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTR 245
           K G    A  +++  I+ G  P+  TY  L+ G C ++ + +AR V   M++K  +    
Sbjct: 306 KEGMLSEAQGIIKIMIEKGVEPNYATYNSLMNGYCLQNKVFEARMVFDAMITKGCMPNVV 365

Query: 246 ICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM 305
             NI +   C  +   E   +   M      P+    NT+I+G C+ GR  EA ++  DM
Sbjct: 366 SYNILINGYCKAQRIDEARELFDEMSFRGLIPNTFNYNTLISGLCQAGRHCEARELFKDM 425

Query: 306 VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLR 365
            A + C+PD VT T ++  L  +G +  AL  L++ M      P +VTY+ ++R +++  
Sbjct: 426 QA-QGCSPDLVTCTILLDSLCKLGYLDNALR-LFRAMQDSCLKPNLVTYDILIRAMYKSG 483

Query: 366 RV 367
           ++
Sbjct: 484 KI 485



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/331 (22%), Positives = 156/331 (47%), Gaps = 6/331 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   +   A + F +M + G+ PN+ +Y T+I G+C+ G+  VA  +  +M   G 
Sbjct: 161 INGLCFEDKFARAMEFFDEMVASGYQPNLHTYNTIIKGFCKIGKTTVAVGLLKKMDKAGG 220

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ + Y+ ++ G+ + R V  A      ++  +K  + +  +   ++ L+  LC     
Sbjct: 221 RPDIVIYNTIIDGLCKDRLVSEA----LDIFSEIK-GKGVRPDVFTYSILMHGLCNSDQK 275

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E   +  +M     + +      ++D LC+ G    A  ++ +M ++G+ P+  +YNS+
Sbjct: 276 EEASALFNEMMSLNIMPDVVTFNILVDKLCKEGMLSEAQGIIKIMIEKGVEPNYATYNSL 335

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++G C       A  + +  I  G +P+  +Y +L+ G C    +++AR++   M  +  
Sbjct: 336 MNGYCLQNKVFEARMVFDAMITKGCMPNVVSYNILINGYCKAQRIDEARELFDEMSFRGL 395

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           +  T   N  +  LC      E   +   M    C PD++T   +++  CK+G ++ AL+
Sbjct: 396 IPNTFNYNTLISGLCQAGRHCEARELFKDMQAQGCSPDLVTCTILLDSLCKLGYLDNALR 455

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRI 331
           +   M       P+ VT+  +I  +   G+I
Sbjct: 456 LFRAM-QDSCLKPNLVTYDILIRAMYKSGKI 485



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 94/192 (48%), Gaps = 5/192 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D+LC    + EA  +   M  +G  PN  +Y +L++GYC   ++  A  VFD M   G 
Sbjct: 301 VDKLCKEGMLSEAQGIIKIMIEKGVEPNYATYNSLMNGYCLQNKVFEARMVFDAMITKGC 360

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +PN ++Y++L+ G  + + ++ A  L  ++  R      L  N   +  L+  LC+ G  
Sbjct: 361 MPNVVSYNILINGYCKAQRIDEARELFDEMSFR-----GLIPNTFNYNTLISGLCQAGRH 415

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E   + +DM       +   C  ++DSLC+ G    A R+   M+   L P+LV+Y+ +
Sbjct: 416 CEARELFKDMQAQGCSPDLVTCTILLDSLCKLGYLDNALRLFRAMQDSCLKPNLVTYDIL 475

Query: 181 VHGLCKHGGCMR 192
           +  + K G   R
Sbjct: 476 IRAMYKSGKIYR 487


>gi|356507117|ref|XP_003522317.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g61400-like [Glycine max]
          Length = 498

 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 133/463 (28%), Positives = 214/463 (46%), Gaps = 30/463 (6%)

Query: 15  KLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVL--VR 72
           +++ DM SR   P V++Y  L++  C  G+   A KVFDEM   G+ PN + Y  +    
Sbjct: 25  EVYVDMMSRRFSPTVITYGILMNCCCAQGDFSNAQKVFDEMLERGIEPNVVIYGQMGEAE 84

Query: 73  GVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQ 132
           GV                + RM+E   ++ N   +  L+D     G V  VF +  DM +
Sbjct: 85  GV----------------FGRMRESGVVTPNLYTYKTLMDGYSMMGDVKRVFYLYCDMLK 128

Query: 133 GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMR 192
                +      +ID L + G    A      M K  + P+  +YNS++HG CK G  + 
Sbjct: 129 PGLYPDVVTFATLIDVLRKMGDLKAAXNCFAYMAKFDVVPNGHAYNSLIHGYCKAGDLLE 188

Query: 193 AYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLR 252
           A  L  E  + G      TY +L++GLC    LE+A  +++ M   +    +   N+ + 
Sbjct: 189 AMWLRLEMERCGIFSDVVTYNILIKGLCDICRLEEAMGLMEKMDEVEVFANSVXFNVVID 248

Query: 253 ALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCA 312
             C I +  + + V   M +   +P+VIT + +I+GFC  G +  A+ +  +MV  K   
Sbjct: 249 GCCKIGDMEKAIEVCSQMTEEXIEPNVITFSILIDGFCNKGNVRAAMGLYTEMVI-KGIV 307

Query: 313 PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKE 372
           PD VT+T +I G   VG  +EA   L++ M   G SP + T + V+ GL +  R  +A +
Sbjct: 308 PDVVTYTALIDGHCKVGNTKEAFR-LHKEMLDAGLSPNMFTVSCVIDGLLKDGRTNDAIK 366

Query: 373 VFNCMLGIGVVAD----------STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
           +F    G G   D          S  YAI+I GLCE   + +A +F+ ++ W     D  
Sbjct: 367 MFLEKTGAGYPGDKMDSRFCSPNSMMYAILIQGLCEDGXIFKATKFFAEMKWNGFKPDML 426

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDG 465
           VY  M++   +S  + + +    ++V  GV  N   Y V+  G
Sbjct: 427 VYVTMLQAHFQSKHMIDVMMLHADMVKMGVIQNTFIYRVLSRG 469



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 94/407 (23%), Positives = 189/407 (46%), Gaps = 16/407 (3%)

Query: 9   RVGEAHKLFFDMKSRGHV-PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTY 67
           ++GEA  +F  M+  G V PN+ +Y TL+ GY   G++   + ++ +M   G+ P+ +T+
Sbjct: 79  QMGEAEGVFGRMRESGVVTPNLYTYKTLMDGYSMMGDVKRVFYLYCDMLKPGLYPDVVTF 138

Query: 68  SVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIA 127
           + L+  VLR     +A    F    +     D+  N  A+ +L+   C+ G + E   + 
Sbjct: 139 ATLID-VLRKMGDLKAAXNCFAYMAKF----DVVPNGHAYNSLIHGYCKAGDLLEAMWLR 193

Query: 128 EDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKH 187
            +M +    ++      +I  LC   R   A  ++  M +  +  + V +N ++ G CK 
Sbjct: 194 LEMERCGIFSDVVTYNILIKGLCDICRLEEAMGLMEKMDEVEVFANSVXFNVVIDGCCKI 253

Query: 188 GGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC 247
           G   +A ++  +  +    P+  T+ +L++G C + ++  A  +   M+ K  V      
Sbjct: 254 GDMEKAIEVCSQMTEEXIEPNVITFSILIDGFCNKGNVRAAMGLYTEMVIKGIVPDVVTY 313

Query: 248 NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL----- 302
              +   C + N  E   +   ML     P++ T++ VI+G  K GR  +A+K+      
Sbjct: 314 TALIDGHCKVGNTKEAFRLHKEMLDAGLSPNMFTVSCVIDGLLKDGRTNDAIKMFLEKTG 373

Query: 303 ----NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
                D +  +FC+P+++ +  +I GL   G I +A     + M   G+ P ++ Y  +L
Sbjct: 374 AGYPGDKMDSRFCSPNSMMYAILIQGLCEDGXIFKATKFFAE-MKWNGFKPDMLVYVTML 432

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA 405
           +  F+ + + +   +   M+ +GV+ ++  Y ++  G  E+  L  A
Sbjct: 433 QAHFQSKHMIDVMMLHADMVKMGVIQNTFIYRVLSRGYRENGYLKSA 479



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 94/388 (24%), Positives = 175/388 (45%), Gaps = 13/388 (3%)

Query: 110 LVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRG 169
           L+  L +    + ++ +  DM   +        G +++  C  G    A +V   M +RG
Sbjct: 10  LLHGLVKTQMFDSLWEVYVDMMSRRFSPTVITYGILMNCCCAQGDFSNAQKVFDEMLERG 69

Query: 170 LTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKAR 229
           + P++V Y  +       G      ++ E G+     P+ +TYK L++G     D+++  
Sbjct: 70  IEPNVVIYGQMGEAEGVFG------RMRESGV---VTPNLYTYKTLMDGYSMMGDVKRVF 120

Query: 230 KVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGF 289
            +   ML              +  L  + +     N   +M +    P+    N++I+G+
Sbjct: 121 YLYCDMLKPGLYPDVVTFATLIDVLRKMGDLKAAXNCFAYMAKFDVVPNGHAYNSLIHGY 180

Query: 290 CKMGRIEEALKVLNDMV-AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYS 348
           CK G + EA+ +  +M   G F   D VT+  +I GL ++ R++EA+ L+ + M +    
Sbjct: 181 CKAGDLLEAMWLRLEMERCGIF--SDVVTYNILIKGLCDICRLEEAMGLM-EKMDEVEVF 237

Query: 349 PGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRF 408
              V +N V+ G  ++  +E+A EV + M    +  +  T++I+IDG C    +  A   
Sbjct: 238 ANSVXFNVVIDGCCKIGDMEKAIEVCSQMTEEXIEPNVITFSILIDGFCNKGNVRAAMGL 297

Query: 409 WDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACK 468
           + ++V    + D   Y A+I G C+ G   EA     E++D+G++PN+   + VIDG  K
Sbjct: 298 YTEMVIKGIVPDVVTYTALIDGHCKVGNTKEAFRLHKEMLDAGLSPNMFTVSCVIDGLLK 357

Query: 469 LSMKREAYQILREMRKNGLNPDAVTWRI 496
                +A ++  E    G   D +  R 
Sbjct: 358 DGRTNDAIKMFLEKTGAGYPGDKMDSRF 385



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 152/335 (45%), Gaps = 11/335 (3%)

Query: 172 PSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKV 231
           P+L   N+++HGL K       +++  + +   + P+  TY +L+   C + D   A+KV
Sbjct: 2   PTLQPCNALLHGLVKTQMFDSLWEVYVDMMSRRFSPTVITYGILMNCCCAQGDFSNAQKV 61

Query: 232 LQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK 291
              ML +       I      A  +     E              P++ T  T+++G+  
Sbjct: 62  FDEMLERGIEPNVVIYGQMGEAEGVFGRMRE---------SGVVTPNLYTYKTLMDGYSM 112

Query: 292 MGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGI 351
           MG ++    +  DM+      PD VTF T+I  L  +G ++ A N  +  M +    P  
Sbjct: 113 MGDVKRVFYLYCDMLKPGL-YPDVVTFATLIDVLRKMGDLKAAXNC-FAYMAKFDVVPNG 170

Query: 352 VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDD 411
             YN+++ G  +   + EA  +   M   G+ +D  TY I+I GLC+  +L+EA    + 
Sbjct: 171 HAYNSLIHGYCKAGDLLEAMWLRLEMERCGIFSDVVTYNILIKGLCDICRLEEAMGLMEK 230

Query: 412 IVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSM 471
           +       ++  +  +I G C+ G + +A+    ++ +  + PN++ ++++IDG C    
Sbjct: 231 MDEVEVFANSVXFNVVIDGCCKIGDMEKAIEVCSQMTEEXIEPNVITFSILIDGFCNKGN 290

Query: 472 KREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
            R A  +  EM   G+ PD VT+  L   H   GN
Sbjct: 291 VRAAMGLYTEMVIKGIVPDVVTYTALIDGHCKVGN 325



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 84/360 (23%), Positives = 153/360 (42%), Gaps = 32/360 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D L  +  +  A   F  M     VPN  +Y +LIHGYC+ G++  A  +  EM  CG+
Sbjct: 142 IDVLRKMGDLKAAXNCFAYMAKFDVVPNGHAYNSLIHGYCKAGDLLEAMWLRLEMERCGI 201

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             + +TY++L++G+     +E A  LM    E+M E E  + N+  F  ++D  C+ G +
Sbjct: 202 FSDVVTYNILIKGLCDICRLEEAMGLM----EKMDEVEVFA-NSVXFNVVIDGCCKIGDM 256

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +   +   M +            +ID  C  G    A  +   M  +G+ P +V+Y ++
Sbjct: 257 EKAIEVCSQMTEEXIEPNVITFSILIDGFCNKGNVRAAMGLYTEMVIKGIVPDVVTYTAL 316

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G CK G    A++L +E +  G  P+  T   +++GL  +    +    ++  L K  
Sbjct: 317 IDGHCKVGNTKEAFRLHKEMLDAGLSPNMFTVSCVIDGLLKDG---RTNDAIKMFLEKTG 373

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                              P + ++         C P+ +    +I G C+ G I +A K
Sbjct: 374 AGY----------------PGDKMD------SRFCSPNSMMYAILIQGLCEDGXIFKATK 411

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
              +M    F  PD + + T++        + + + +L+  M + G       Y  + RG
Sbjct: 412 FFAEMKWNGF-KPDMLVYVTMLQAHFQSKHMIDVM-MLHADMVKMGVIQNTFIYRVLSRG 469



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 92/225 (40%), Gaps = 35/225 (15%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C    V  A  L+ +M  +G VP+VV+YT LI G+C+ G    A+++  EM   G+
Sbjct: 282 IDGFCNKGNVRAAMGLYTEMVIKGIVPDVVTYTALIDGHCKVGNTKEAFRLHKEMLDAGL 341

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERM--------KEEEDLSVNNAAFANLVD 112
            PN  T S ++ G+L+     R N  +    E+          +    S N+  +A L+ 
Sbjct: 342 SPNMFTVSCVIDGLLKDG---RTNDAIKMFLEKTGAGYPGDKMDSRFCSPNSMMYAILIQ 398

Query: 113 SLCREGYVNEVFRIAEDMPQG----------KSVNEEFACGHMIDSLCRSGRNHGASRVV 162
            LC +G + +  +   +M               +   F   HMID +             
Sbjct: 399 GLCEDGXIFKATKFFAEMKWNGFKPDMLVYVTMLQAHFQSKHMIDVMMLHAD-------- 450

Query: 163 YVMRKRGLTPSLVSYNSIVHGLCKHG----GCMRAYQLLEEGIQF 203
             M K G+  +   Y  +  G  ++G      M +  L+E GI F
Sbjct: 451 --MVKMGVIQNTFIYRVLSRGYRENGYLKSALMCSEYLMEYGIHF 493


>gi|224030417|gb|ACN34284.1| unknown [Zea mays]
 gi|413950072|gb|AFW82721.1| hypothetical protein ZEAMMB73_503137 [Zea mays]
          Length = 647

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 123/497 (24%), Positives = 228/497 (45%), Gaps = 12/497 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D L   + VG    ++ +M+  G  PNV +Y  L+   C+   +  A K+ DEM   G 
Sbjct: 135 IDALLRENMVGAVVLVYDNMRKDGVHPNVFTYNLLVRALCQNNRVGAARKMLDEMARKGC 194

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TY+ +V  + +   ++ A  ++            +    A++  +V +LCRE  +
Sbjct: 195 PPDDVTYATIVSVLCKLDRLDEATEVL----------AAMPPVAASYNAIVLALCREFRM 244

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            EVF +  DM              ++D+ C++G    A  ++  M   G TP++V++ ++
Sbjct: 245 QEVFSVVSDMVGRGLQPNVITYTTIVDAFCKAGELRMACAILARMVITGCTPNVVTFTAL 304

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           V GL   G    A  +    +  G+ PS  +Y +L+ GLC   DL+ A  +L  M     
Sbjct: 305 VRGLFDDGRVHDALDMWRWMVAEGWAPSTVSYNILIRGLCSVGDLKGASSILNSMEQHGC 364

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
               R  +  +       +    +++   M ++ C+P+V+    +++ FCK     +A  
Sbjct: 365 FPNVRTYSTLIDGFSKAGDLGGAISIWNDMSRSGCKPNVVVYTNMVDVFCKKLMFNQAKS 424

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +++ M+  + C P+ VTF T+I  L +  R+  AL + ++ M + G  P   TYN ++ G
Sbjct: 425 LIDKMLL-ENCPPNTVTFNTLIRSLCDCRRVGRALGVFHE-MRRHGCVPNGRTYNELIHG 482

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           LFR     +A  +   M   G+     TY  V+ GLC++    EA  F   ++      +
Sbjct: 483 LFREGNCGDALHMVTEMQSHGIELSLVTYNTVVSGLCQTRMSREAMVFVGKMIVQGIQPN 542

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
            + ++A+I   C+ G++  A   L  +       NI+ Y +++   C      +A   L 
Sbjct: 543 AFTFSAIIHAYCKEGEVRMAAWMLGAMNVVNCHRNILVYTILMAELCNQDKLVDAMTYLL 602

Query: 481 EMRKNGLNPDAVTWRIL 497
           +M   G+ P+ VTW +L
Sbjct: 603 KMLYEGIYPNTVTWNVL 619



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 102/444 (22%), Positives = 190/444 (42%), Gaps = 42/444 (9%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R+ E   +  DM  RG  PNV++YTT++  +C+ GE+ +A  +   M   G  PN
Sbjct: 238 LCREFRMQEVFSVVSDMVGRGLQPNVITYTTIVDAFCKAGELRMACAILARMVITGCTPN 297

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +T++ LVRG+     V  A      +W  M                      EG+    
Sbjct: 298 VVTFTALVRGLFDDGRVHDA----LDMWRWMVA--------------------EGWA--- 330

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
                  P   S N       +I  LC  G   GAS ++  M + G  P++ +Y++++ G
Sbjct: 331 -------PSTVSYNI------LIRGLCSVGDLKGASSILNSMEQHGCFPNVRTYSTLIDG 377

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
             K G    A  +  +  + G  P+   Y  +V+  C +    +A+ ++  ML +     
Sbjct: 378 FSKAGDLGGAISIWNDMSRSGCKPNVVVYTNMVDVFCKKLMFNQAKSLIDKMLLENCPPN 437

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
           T   N  +R+LC  +     L V   M +  C P+  T N +I+G  + G   +AL ++ 
Sbjct: 438 TVTFNTLIRSLCDCRRVGRALGVFHEMRRHGCVPNGRTYNELIHGLFREGNCGDALHMVT 497

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           +M +        VT+ T++ GL      +EA+  + +++ Q G  P   T++A++    +
Sbjct: 498 EMQSHGI-ELSLVTYNTVVSGLCQTRMSREAMVFVGKMIVQ-GIQPNAFTFSAIIHAYCK 555

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
              V  A  +   M  +    +   Y I++  LC  ++L +A  +   +++     +   
Sbjct: 556 EGEVRMAAWMLGAMNVVNCHRNILVYTILMAELCNQDKLVDAMTYLLKMLYEGIYPNTVT 615

Query: 424 YAAMIKGLCRSGKIHEAVHFLYEL 447
           +  +++G+ R+    E   F+  +
Sbjct: 616 WNVLVRGVFRNLGCIEPSDFIQHI 639



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 91/220 (41%), Gaps = 7/220 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C      +A  L   M      PN V++ TLI   C    +  A  VF EMR  G 
Sbjct: 410 VDVFCKKLMFNQAKSLIDKMLLENCPPNTVTFNTLIRSLCDCRRVGRALGVFHEMRRHGC 469

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +PN  TY+ L+ G+ R  +   A  ++ ++     +   + ++   +  +V  LC+    
Sbjct: 470 VPNGRTYNELIHGLFREGNCGDALHMVTEM-----QSHGIELSLVTYNTVVSGLCQTRMS 524

Query: 121 NEVFRIAEDM-PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
            E       M  QG   N  F    +I + C+ G    A+ ++  M       +++ Y  
Sbjct: 525 REAMVFVGKMIVQGIQPN-AFTFSAIIHAYCKEGEVRMAAWMLGAMNVVNCHRNILVYTI 583

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGL 219
           ++  LC     + A   L + +  G  P+  T+ VLV G+
Sbjct: 584 LMAELCNQDKLVDAMTYLLKMLYEGIYPNTVTWNVLVRGV 623



 Score = 39.3 bits (90), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 36/75 (48%)

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
           +Y  +I  L R   +   V     +   GV PN+  YN+++   C+ +    A ++L EM
Sbjct: 130 LYNHLIDALLRENMVGAVVLVYDNMRKDGVHPNVFTYNLLVRALCQNNRVGAARKMLDEM 189

Query: 483 RKNGLNPDAVTWRIL 497
            + G  PD VT+  +
Sbjct: 190 ARKGCPPDDVTYATI 204


>gi|449523852|ref|XP_004168937.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
           mitochondrial-like [Cucumis sativus]
          Length = 683

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 136/531 (25%), Positives = 238/531 (44%), Gaps = 45/531 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C L  +  A     +M+ +  VPNV++Y++LI+GY + G +  A+KV  +M H   
Sbjct: 122 IDSRCKLGDINGAESALHEMEEKDCVPNVITYSSLINGYVKQGLLHDAFKVLRKMVHKNA 181

Query: 61  LPNSLTYSVLVRGVLRT--RDVE------------RANVLMF-------KLWERMKEEED 99
           +PN  TY++L+ G  +   +D+             + NV +        K   RM+E E+
Sbjct: 182 MPNICTYAILLDGSFKAGWQDIALDLYSKMKQGGLKDNVFILDAFVNNMKRSGRMEEAEE 241

Query: 100 LSVNNAA---------FANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC 150
           L    A+         + NL+D   + G V+    +A++M     V +      +I+ L 
Sbjct: 242 LVAKMASGGLKPDLVNYTNLMDGFLKSGKVSSALNLAQEMTSKNVVFDIVTFNVLINCLF 301

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
           + G++   S +   MR+ GL+P L +YN++++G  K G    A +L  E      +P+  
Sbjct: 302 KLGKSDTES-IYSAMREMGLSPDLATYNTMLNGNFKKGNWTSALELWNEMKSRKLIPNAI 360

Query: 211 TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM 270
           T  +++ GLC    +E A  +L+ M+       +    I L      +    +L     +
Sbjct: 361 TCNIMINGLCEAGRMENAIDILKEMVLMGLYPTSTTYRILLNISSKSRRADTILQTHELL 420

Query: 271 LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR 330
           +  Q + D    N +I+  CK+G   +A  VL DM      A D  T+  +I G      
Sbjct: 421 VNMQLKVDKDVYNILISNLCKLGMTRKATAVLKDMEERGIIA-DTTTYNALIHGYCISSH 479

Query: 331 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYA 390
           ++ A  + Y  M     SP I TYN +L GL +   + EA ++ + +   G+V ++ TY 
Sbjct: 480 LKRAF-MTYSTMLSERVSPDIETYNLLLGGLSKAGLIHEADDLLSEIKKRGLVPNACTYE 538

Query: 391 IVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 450
            ++ G C+     E  R + ++V    I     Y  +I    + GK+ +A   + E+   
Sbjct: 539 TLMCGHCKVRNTKECLRIYCEMVIKGFIPKPRAYNMLIGYFSKMGKMKQAKELMNEMQTK 598

Query: 451 GVTPNIVCYNVVIDGAC------------KLSMKREAYQILREMRKNGLNP 489
           GV+P    Y+++I G C            K+S + EA ++  EM   G  P
Sbjct: 599 GVSPTCTTYDILICGWCNLLKMPDLGSTLKISYRAEAKRLFIEMNDRGFVP 649



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 132/497 (26%), Positives = 221/497 (44%), Gaps = 43/497 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D L    ++ EA  LF ++     VPN ++Y+ LI   C+ G+++ A     EM     
Sbjct: 87  IDGLFKSGQIKEAEYLFCNLYQLNLVPNYITYSALIDSRCKLGDINGAESALHEMEEKDC 146

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +PN +TYS L+ G ++   +  A    FK+  +M  +  +  N   +A L+D   + G+ 
Sbjct: 147 VPNVITYSSLINGYVKQGLLHDA----FKVLRKMVHKNAMP-NICTYAILLDGSFKAGWQ 201

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +    +   M QG   +  F     ++++ RSGR   A  +V  M   GL P LV+Y ++
Sbjct: 202 DIALDLYSKMKQGGLKDNVFILDAFVNNMKRSGRMEEAEELVAKMASGGLKPDLVNYTNL 261

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G  K G    A  L +E      +    T+ VL+  L              F L K D
Sbjct: 262 MDGFLKSGKVSSALNLAQEMTSKNVVFDIVTFNVLINCL--------------FKLGKSD 307

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
            +                      ++   M +    PD+ T NT++NG  K G    AL+
Sbjct: 308 TE----------------------SIYSAMREMGLSPDLATYNTMLNGNFKKGNWTSALE 345

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           + N+M + K   P+A+T   +I GL   GR++ A+++L + M   G  P   TY  +L  
Sbjct: 346 LWNEMKSRKL-IPNAITCNIMINGLCEAGRMENAIDILKE-MVLMGLYPTSTTYRILLNI 403

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
             + RR +   +    ++ + +  D   Y I+I  LC+     +A     D+     I D
Sbjct: 404 SSKSRRADTILQTHELLVNMQLKVDKDVYNILISNLCKLGMTRKATAVLKDMEERGIIAD 463

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              Y A+I G C S  +  A      ++   V+P+I  YN+++ G  K  +  EA  +L 
Sbjct: 464 TTTYNALIHGYCISSHLKRAFMTYSTMLSERVSPDIETYNLLLGGLSKAGLIHEADDLLS 523

Query: 481 EMRKNGLNPDAVTWRIL 497
           E++K GL P+A T+  L
Sbjct: 524 EIKKRGLVPNACTYETL 540



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 114/483 (23%), Positives = 230/483 (47%), Gaps = 10/483 (2%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M   G  P+VV++ ++++G C+ G++     +  EM   G+  N+++Y++L+  + +   
Sbjct: 1   MVGSGIFPDVVTFGSILYGLCKHGKLSEGKLLLREMGKMGMNLNNVSYTILLDALFKAGK 60

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
           V  A + +  +  R    + +     A   L+D L + G + E   +  ++ Q   V   
Sbjct: 61  VAEALMTLACMIVRGNNFDVI-----ACTVLIDGLFKSGQIKEAEYLFCNLYQLNLVPNY 115

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
                +IDS C+ G  +GA   ++ M ++   P++++Y+S+++G  K G    A+++L +
Sbjct: 116 ITYSALIDSRCKLGDINGAESALHEMEEKDCVPNVITYSSLINGYVKQGLLHDAFKVLRK 175

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
            +    +P+  TY +L++G       + A  +   M      D   I + ++  +     
Sbjct: 176 MVHKNAMPNICTYAILLDGSFKAGWQDIALDLYSKMKQGGLKDNVFILDAFVNNMKRSGR 235

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
             E   ++  M     +PD++    +++GF K G++  AL +  +M + K    D VTF 
Sbjct: 236 MEEAEELVAKMASGGLKPDLVNYTNLMDGFLKSGKVSSALNLAQEMTS-KNVVFDIVTFN 294

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
            +I  L  +G+       +Y  M + G SP + TYN +L G F+      A E++N M  
Sbjct: 295 VLINCLFKLGK--SDTESIYSAMREMGLSPDLATYNTMLNGNFKKGNWTSALELWNEMKS 352

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
             ++ ++ T  I+I+GLCE+ +++ A     ++V       +  Y  ++    +S +   
Sbjct: 353 RKLIPNAITCNIMINGLCEAGRMENAIDILKEMVLMGLYPTSTTYRILLNISSKSRRADT 412

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
            +     LV+  +  +   YN++I   CKL M R+A  +L++M + G+  D  T+  L  
Sbjct: 413 ILQTHELLVNMQLKVDKDVYNILISNLCKLGMTRKATAVLKDMEERGIIADTTTYNAL-- 470

Query: 500 LHG 502
           +HG
Sbjct: 471 IHG 473



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 90/344 (26%), Positives = 165/344 (47%), Gaps = 7/344 (2%)

Query: 165 MRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESD 224
           M   G+ P +V++ SI++GLCKHG       LL E  + G   +  +Y +L++ L     
Sbjct: 1   MVGSGIFPDVVTFGSILYGLCKHGKLSEGKLLLREMGKMGMNLNNVSYTILLDALFKAGK 60

Query: 225 LEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNT 284
           + +A   L  M+ + +      C + +  L       E   +   + Q    P+ IT + 
Sbjct: 61  VAEALMTLACMIVRGNNFDVIACTVLIDGLFKSGQIKEAEYLFCNLYQLNLVPNYITYSA 120

Query: 285 VINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ 344
           +I+  CK+G I  A   L++M   K C P+ +T++++I G +  G + +A  +L + M  
Sbjct: 121 LIDSRCKLGDINGAESALHEM-EEKDCVPNVITYSSLINGYVKQGLLHDAFKVLRK-MVH 178

Query: 345 RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 404
           +   P I TY  +L G F+    + A ++++ M   G+  +       ++ +  S +++E
Sbjct: 179 KNAMPNICTYAILLDGSFKAGWQDIALDLYSKMKQGGLKDNVFILDAFVNNMKRSGRMEE 238

Query: 405 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
           A+     +       D   Y  ++ G  +SGK+  A++   E+    V  +IV +NV+I+
Sbjct: 239 AEELVAKMASGGLKPDLVNYTNLMDGFLKSGKVSSALNLAQEMTSKNVVFDIVTFNVLIN 298

Query: 465 GACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGN--RGN 506
              KL  K +   I   MR+ GL+PD  T+  +  L+GN  +GN
Sbjct: 299 CLFKLG-KSDTESIYSAMREMGLSPDLATYNTM--LNGNFKKGN 339


>gi|302793330|ref|XP_002978430.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
 gi|300153779|gb|EFJ20416.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
          Length = 475

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 114/412 (27%), Positives = 200/412 (48%), Gaps = 11/412 (2%)

Query: 94  MKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEF---ACGHMIDSLC 150
           M  E    +NN A+   +  LC+ G + + F     M +  S ++      C  +I  LC
Sbjct: 1   MAVESKAPLNNVAWTAFLGGLCKSGKIEQAFEACRTMQESLSSSQPPSSGTCHSVIQELC 60

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQ---FGYLP 207
           ++GR   A  ++  M KRG  P + +++ +++ LCK      A + L+ G+         
Sbjct: 61  KAGRVDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQ-GMNRTISTRAS 119

Query: 208 SEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC-NIYLRALCLIKNPTELLNV 266
           S  +Y  L+  LC    + +A  +   M+S++ V    +  +I +   C I        +
Sbjct: 120 SCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELGRAEKL 179

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
              M+   C P+V T N  +NG  + GRI +A  V  +M++   C+PD +T++T+I G  
Sbjct: 180 YKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMISAG-CSPDVITYSTLIHGF- 237

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
           ++ R  +  + L++ M  RG  P  VTYN +L GL +  + +EA E+F  M+  G   D 
Sbjct: 238 SLARKHDQAHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDK 297

Query: 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE 446
            TY  ++ G C   ++++A   +D++V   +  D   Y  ++KG  R+GK  EA      
Sbjct: 298 VTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEARQLFQV 357

Query: 447 LVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN-GLNPDAVTWRIL 497
           +V     P+ V +N++IDG  K     +A ++   M ++ G +PD VT+  L
Sbjct: 358 MVSRECKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSL 409



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 109/445 (24%), Positives = 224/445 (50%), Gaps = 14/445 (3%)

Query: 28  NVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSL---TYSVLVRGVLRTRDVERAN 84
           N V++T  + G C++G+++ A++    M+            T   +++ + +   V+ A 
Sbjct: 10  NNVAWTAFLGGLCKSGKIEQAFEACRTMQESLSSSQPPSSGTCHSVIQELCKAGRVDSAL 69

Query: 85  VLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE--FAC 142
            L+  + +R         + A  + L++ LC+   + E     + M +  S      F+ 
Sbjct: 70  SLLETMIKR-----GYCPDMATHSMLINELCKADKIQEAQEFLQGMNRTISTRASSCFSY 124

Query: 143 GHMIDSLCRSGRNHGASRVVYVM-RKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGI 201
             +++SLC++ + H A  +   M  +R + P +VSY+ ++ G CK     RA +L ++ I
Sbjct: 125 NSLLNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELGRAEKLYKQMI 184

Query: 202 QFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPT 261
               +P+  TY   + GL  +  +  A+ V + M+S          +  +    L +   
Sbjct: 185 DLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYSTLIHGFSLARKHD 244

Query: 262 ELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTI 321
           +   +   M+   C+P+ +T N +++G CK  + +EA ++   MV  + C PD VT+TT+
Sbjct: 245 QAHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVE-RGCDPDKVTYTTL 303

Query: 322 IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG 381
           ++G  NVG+I++A+ + +  M  +G+ P +V YN +L+G FR  +  EA+++F  M+   
Sbjct: 304 LYGFCNVGKIEQAVEV-FDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEARQLFQVMVSRE 362

Query: 382 VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV-YAAMIKGLCRSGKIHEA 440
              D+ ++ I+IDGL ++ +LD+A   ++ +        + V Y ++I GLC   ++ EA
Sbjct: 363 CKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEA 422

Query: 441 VHFLYELVDSGVTPNIVCYNVVIDG 465
           +    E+    ++P+   +NV+++ 
Sbjct: 423 MKVFKEIDRLKLSPDPHAFNVLLEA 447



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 106/404 (26%), Positives = 195/404 (48%), Gaps = 7/404 (1%)

Query: 34  TLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWER 93
           ++I   C+ G +D A  + + M   G  P+  T+S+L+  + +   ++ A   +  +   
Sbjct: 54  SVIQELCKAGRVDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMNRT 113

Query: 94  MKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFAC-GHMIDSLCRS 152
           +      + +  ++ +L++SLC+   V++ F I   M   +SV  +      +ID  C+ 
Sbjct: 114 ISTR---ASSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKI 170

Query: 153 GRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTY 212
                A ++   M      P++ +YN+ ++GL + G    A  + EE I  G  P   TY
Sbjct: 171 DELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITY 230

Query: 213 KVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQ 272
             L+ G       ++A ++ + M+S+         N  L  LC    P E   +   M++
Sbjct: 231 STLIHGFSLARKHDQAHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVE 290

Query: 273 TQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQ 332
             C PD +T  T++ GFC +G+IE+A++V ++MV+ K   PD V +  ++ G    G+  
Sbjct: 291 RGCDPDKVTYTTLLYGFCNVGKIEQAVEVFDEMVS-KGHDPDVVAYNCLLKGFFRAGKPG 349

Query: 333 EALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCM-LGIGVVADSTTYAI 391
           EA   L+QVM  R   P  V++N ++ GL + +R+++A EVF  M    G   D  TY  
Sbjct: 350 EARQ-LFQVMVSRECKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNS 408

Query: 392 VIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG 435
           +I GLC   +L EA + + +I       D + +  +++ +  +G
Sbjct: 409 LIFGLCGEQRLSEAMKVFKEIDRLKLSPDPHAFNVLLEAMYAAG 452



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 92/367 (25%), Positives = 177/367 (48%), Gaps = 13/367 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKS--RGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEM-RH 57
           +++LC   ++ EA +    M         +  SY +L++  C+  ++  A+ +F  M   
Sbjct: 91  INELCKADKIQEAQEFLQGMNRTISTRASSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSE 150

Query: 58  CGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSV--NNAAFANLVDSLC 115
             V+P+ ++YS+L+ G  +  ++ RA     KL+++M    DL+   N   +   ++ L 
Sbjct: 151 RSVVPDVVSYSILIDGFCKIDELGRAE----KLYKQMI---DLNCVPNVTTYNAFLNGLM 203

Query: 116 REGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLV 175
           R+G + +   + E+M       +      +I     + ++  A  +   M  RG  P+ V
Sbjct: 204 RKGRIADAQGVYEEMISAGCSPDVITYSTLIHGFSLARKHDQAHELFEAMISRGCRPNAV 263

Query: 176 SYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM 235
           +YN ++HGLCK      A++L  + ++ G  P + TY  L+ G C    +E+A +V   M
Sbjct: 264 TYNCLLHGLCKESKPDEAHELFRKMVERGCDPDKVTYTTLLYGFCNVGKIEQAVEVFDEM 323

Query: 236 LSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 295
           +SK         N  L+       P E   +   M+  +C+PD ++ N +I+G  K  R+
Sbjct: 324 VSKGHDPDVVAYNCLLKGFFRAGKPGEARQLFQVMVSRECKPDTVSHNIMIDGLSKAKRL 383

Query: 296 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN 355
           ++A++V   M     C+PD VT+ ++IFGL    R+ EA+ +  ++  +   SP    +N
Sbjct: 384 DDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVFKEI-DRLKLSPDPHAFN 442

Query: 356 AVLRGLF 362
            +L  ++
Sbjct: 443 VLLEAMY 449



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 98/399 (24%), Positives = 193/399 (48%), Gaps = 9/399 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEM-RHCG 59
           + +LC   RV  A  L   M  RG+ P++ +++ LI+  C+  ++  A +    M R   
Sbjct: 56  IQELCKAGRVDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMNRTIS 115

Query: 60  VLPNS-LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREG 118
              +S  +Y+ L+  + + + V +A    F ++  M  E  +  +  +++ L+D  C+  
Sbjct: 116 TRASSCFSYNSLLNSLCKAKKVHQA----FAIFSTMVSERSVVPDVVSYSILIDGFCKID 171

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
            +    ++ + M     V         ++ L R GR   A  V   M   G +P +++Y+
Sbjct: 172 ELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYS 231

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
           +++HG        +A++L E  I  G  P+  TY  L+ GLC ES  ++A ++ + M+ +
Sbjct: 232 TLIHGFSLARKHDQAHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVER 291

Query: 239 K-DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
             D D+     + L   C +    + + V   M+     PDV+  N ++ GF + G+  E
Sbjct: 292 GCDPDKVTYTTL-LYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGE 350

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           A ++   MV+ + C PD V+   +I GL    R+ +A+ +  ++    G SP +VTYN++
Sbjct: 351 ARQLFQVMVS-RECKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSL 409

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 396
           + GL   +R+ EA +VF  +  + +  D   + ++++ +
Sbjct: 410 IFGLCGEQRLSEAMKVFKEIDRLKLSPDPHAFNVLLEAM 448



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 93/354 (26%), Positives = 162/354 (45%), Gaps = 37/354 (10%)

Query: 149 LCRSGRNHGASRVVYVMRKRGLTPSLV---SYNSIVHGLCKHGGCMRAYQLLEEGIQFGY 205
           LC+SG+   A      M++   +       + +S++  LCK G    A  LLE  I+ GY
Sbjct: 21  LCKSGKIEQAFEACRTMQESLSSSQPPSSGTCHSVIQELCKAGRVDSALSLLETMIKRGY 80

Query: 206 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 265
            P   T+ +L+  LC    +++A++ LQ M      +RT    I  RA            
Sbjct: 81  CPDMATHSMLINELCKADKIQEAQEFLQGM------NRT----ISTRA------------ 118

Query: 266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 325
                  + C     + N+++N  CK  ++ +A  + + MV+ +   PD V+++ +I G 
Sbjct: 119 -------SSC----FSYNSLLNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGF 167

Query: 326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 385
             +  +  A   LY+ M      P + TYNA L GL R  R+ +A+ V+  M+  G   D
Sbjct: 168 CKIDELGRA-EKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPD 226

Query: 386 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY 445
             TY+ +I G   + + D+A   ++ ++      +   Y  ++ GLC+  K  EA     
Sbjct: 227 VITYSTLIHGFSLARKHDQAHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFR 286

Query: 446 ELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
           ++V+ G  P+ V Y  ++ G C +    +A ++  EM   G +PD V +  L K
Sbjct: 287 KMVERGCDPDKVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLK 340


>gi|242043130|ref|XP_002459436.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
 gi|241922813|gb|EER95957.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
          Length = 684

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 135/498 (27%), Positives = 241/498 (48%), Gaps = 19/498 (3%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC L R  +A  L   M   G VP+ V Y T+IH     G +  A  + DEM   G   +
Sbjct: 190 LCRLGRARDALALLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAATLLDEMLLMGCAAD 249

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             T++ +V G+     V  A  L+ ++   M      SV    F  L+  LCR    +E 
Sbjct: 250 VNTFNDVVLGLCGLGHVREAARLVDRM---MMHGCTPSVVTYGF--LLRGLCRTRQADEA 304

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRS----GRNHGASRVVYVMRKRGLTPSLVSYNS 179
           + +   +P+   V        M++++ R     G+   A+ +  +M  +G  P + +YN 
Sbjct: 305 YAMLGRVPEVNVV--------MLNTVIRGCLAEGKLARATELYEMMGSKGCPPDVHTYNI 356

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++HGLCK G C  A ++L+E  + G  P+  TY  L+   C     + AR +L  M +K 
Sbjct: 357 LMHGLCKLGRCGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMSAKG 416

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
               ++  N  + AL       E + ++  M    C+PD+ T NT+I   C   +++EA 
Sbjct: 417 FSMNSQGYNGIIYALGKDGKLDEAMRLVQEMKSQGCKPDICTYNTIIYHLCNNDQMDEAE 476

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
            +  +++     A + +T+ T+I  LL+ GR QE L L  + M   G    +V+YN +++
Sbjct: 477 HIFGNLLEEGVVA-NGITYNTLIHALLHSGRWQEGLRLANE-MVLHGCPLDVVSYNGLIK 534

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
            L +   V+ +  +   M+  G+  ++ +Y ++I+ LC++ ++ +A     +++      
Sbjct: 535 ALCKEGNVDRSMMLLEEMMTKGIKPNNFSYNMLINELCKAGKVRDALELSKEMLNQGLTP 594

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           D   Y  +I GLC+ G  H A++ L +L +  V P+IV YN++I   CK+ +  +A  +L
Sbjct: 595 DIVTYNTLINGLCKVGWTHAALNLLEKLPNENVHPDIVTYNILISWHCKVRLLDDASMLL 654

Query: 480 REMRKNGLNPDAVTWRIL 497
            +    G+ P+  TW ++
Sbjct: 655 DKAVSGGIVPNERTWGMM 672



 Score =  174 bits (442), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 132/490 (26%), Positives = 225/490 (45%), Gaps = 16/490 (3%)

Query: 11  GEAHKLFFDMKSRGHV-PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSV 69
           G A  L   M  R  V P+  SY  ++    R      A  ++  M    V P + T+ V
Sbjct: 126 GRALHLLDQMPRRFAVTPSFRSYNAVLSTLARADCHADALLLYRRMLRDRVPPTTFTFGV 185

Query: 70  LVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAED 129
             R + R      A  L+     R         +   +  ++ +L  +G V E   + ++
Sbjct: 186 AARALCRLGRARDALALL-----RGMARHGCVPDAVLYQTVIHALVAQGGVAEAATLLDE 240

Query: 130 MPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG 189
           M       +      ++  LC  G    A+R+V  M   G TPS+V+Y  ++ GLC+   
Sbjct: 241 MLLMGCAADVNTFNDVVLGLCGLGHVREAARLVDRMMMHGCTPSVVTYGFLLRGLCRTRQ 300

Query: 190 CMRAYQLLEEGIQFGYLPSEHT--YKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC 247
              AY +L      G +P  +      ++ G   E  L +A ++ + M SK         
Sbjct: 301 ADEAYAML------GRVPEVNVVMLNTVIRGCLAEGKLARATELYEMMGSKGCPPDVHTY 354

Query: 248 NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA 307
           NI +  LC +      + +L  M +  C P+++T +T+++ FC+ G  ++A  +L+ M A
Sbjct: 355 NILMHGLCKLGRCGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMSA 414

Query: 308 GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRV 367
             F   ++  +  II+ L   G++ EA+ L+ Q M  +G  P I TYN ++  L    ++
Sbjct: 415 KGFSM-NSQGYNGIIYALGKDGKLDEAMRLV-QEMKSQGCKPDICTYNTIIYHLCNNDQM 472

Query: 368 EEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAM 427
           +EA+ +F  +L  GVVA+  TY  +I  L  S +  E  R  +++V      D   Y  +
Sbjct: 473 DEAEHIFGNLLEEGVVANGITYNTLIHALLHSGRWQEGLRLANEMVLHGCPLDVVSYNGL 532

Query: 428 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
           IK LC+ G +  ++  L E++  G+ PN   YN++I+  CK    R+A ++ +EM   GL
Sbjct: 533 IKALCKEGNVDRSMMLLEEMMTKGIKPNNFSYNMLINELCKAGKVRDALELSKEMLNQGL 592

Query: 488 NPDAVTWRIL 497
            PD VT+  L
Sbjct: 593 TPDIVTYNTL 602



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 115/435 (26%), Positives = 197/435 (45%), Gaps = 21/435 (4%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP- 62
           LCGL  V EA +L   M   G  P+VV+Y  L+ G CRT + D AY +       G +P 
Sbjct: 260 LCGLGHVREAARLVDRMMMHGCTPSVVTYGFLLRGLCRTRQADEAYAML------GRVPE 313

Query: 63  -NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEE---EDLSVNNAAFANLVDSLCREG 118
            N +  + ++RG L    + RA     +L+E M  +    D+   N     L+  LC+ G
Sbjct: 314 VNVVMLNTVIRGCLAEGKLARAT----ELYEMMGSKGCPPDVHTYNI----LMHGLCKLG 365

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
                 R+ ++M +            ++ S CR+G    A  ++  M  +G + +   YN
Sbjct: 366 RCGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMSAKGFSMNSQGYN 425

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
            I++ L K G    A +L++E    G  P   TY  ++  LC    +++A  +   +L +
Sbjct: 426 GIIYALGKDGKLDEAMRLVQEMKSQGCKPDICTYNTIIYHLCNNDQMDEAEHIFGNLLEE 485

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
             V      N  + AL       E L +   M+   C  DV++ N +I   CK G ++ +
Sbjct: 486 GVVANGITYNTLIHALLHSGRWQEGLRLANEMVLHGCPLDVVSYNGLIKALCKEGNVDRS 545

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
           + +L +M+  K   P+  ++  +I  L   G++++AL L  +++ Q G +P IVTYN ++
Sbjct: 546 MMLLEEMMT-KGIKPNNFSYNMLINELCKAGKVRDALELSKEMLNQ-GLTPDIVTYNTLI 603

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
            GL ++     A  +   +    V  D  TY I+I   C+   LD+A    D  V    +
Sbjct: 604 NGLCKVGWTHAALNLLEKLPNENVHPDIVTYNILISWHCKVRLLDDASMLLDKAVSGGIV 663

Query: 419 HDNYVYAAMIKGLCR 433
            +   +  M++   R
Sbjct: 664 PNERTWGMMVQNFVR 678



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 85/322 (26%), Positives = 153/322 (47%), Gaps = 6/322 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M  LC L R G A ++  +M+ +G  PN+V+Y+TL+H +CR G  D A  + D+M   G 
Sbjct: 358 MHGLCKLGRCGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMSAKGF 417

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             NS  Y+ ++  + +   ++ A     +L + MK  +    +   +  ++  LC    +
Sbjct: 418 SMNSQGYNGIIYALGKDGKLDEA----MRLVQEMK-SQGCKPDICTYNTIIYHLCNNDQM 472

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E   I  ++ +   V        +I +L  SGR     R+   M   G    +VSYN +
Sbjct: 473 DEAEHIFGNLLEEGVVANGITYNTLIHALLHSGRWQEGLRLANEMVLHGCPLDVVSYNGL 532

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +  LCK G   R+  LLEE +  G  P+  +Y +L+  LC    +  A ++ + ML++  
Sbjct: 533 IKALCKEGNVDRSMMLLEEMMTKGIKPNNFSYNMLINELCKAGKVRDALELSKEMLNQGL 592

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                  N  +  LC +      LN+L  +      PD++T N +I+  CK+  +++A  
Sbjct: 593 TPDIVTYNTLINGLCKVGWTHAALNLLEKLPNENVHPDIVTYNILISWHCKVRLLDDASM 652

Query: 301 VLNDMVAGKFCAPDAVTFTTII 322
           +L+  V+G    P+  T+  ++
Sbjct: 653 LLDKAVSGGI-VPNERTWGMMV 673


>gi|242061542|ref|XP_002452060.1| hypothetical protein SORBIDRAFT_04g017840 [Sorghum bicolor]
 gi|241931891|gb|EES05036.1| hypothetical protein SORBIDRAFT_04g017840 [Sorghum bicolor]
          Length = 674

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 126/528 (23%), Positives = 251/528 (47%), Gaps = 52/528 (9%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C    + +A ++    ++ G   NVV+YT LI GYCR+G +  A ++   M    V P++
Sbjct: 164 CRDGSLWDAERVLEAARASGAA-NVVTYTALIDGYCRSGRLTDALRLIASM---PVAPDT 219

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
            TY+ +++G+   +  E A  LM     R     +   N   FA  + + C+ G ++   
Sbjct: 220 YTYNTVLKGLCFAKQWEEAEELM-----REMIRNNCHPNEVTFATQIRAFCQNGLLDRAV 274

Query: 125 RIAEDMPQ----------GKSVNEEFACGHMIDSL----------------------CRS 152
            + E MP+             VN     G + D+L                      C +
Sbjct: 275 ELLEQMPKYGCMPDVVIYSTLVNGFSEHGRVDDALKLLSTMLCRPNTVCYNAALKGLCIA 334

Query: 153 GRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTY 212
           GR      ++  M ++   P+  +++++++ LC++     A ++LE+  ++GY+P   +Y
Sbjct: 335 GRWDEVGELIAEMVRKDCPPNDATFSTLINSLCQNRLAEYAIEVLEQMQKYGYMPDVVSY 394

Query: 213 KVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQ 272
             ++     ++  + A K+L  ML K D   T   N  L+ LC  +   +   ++  ML+
Sbjct: 395 NTIISCFSEQACADDALKLLNSMLCKPD---TISFNAVLKCLCRAERWYDAAELMAKMLK 451

Query: 273 TQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQ 332
             C  + +T N +I+  C+ G++++A+++  +++    C PD VT++++I G    G  +
Sbjct: 452 EDCHTNEMTFNILIDSLCQNGQVKDAIEMF-ELMPKYRCTPDIVTYSSLINGFSEQGLDK 510

Query: 333 EALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIV 392
            A +L ++ MP R     I +YNA L+GL    R ++A E+   M+    + +  T+ I+
Sbjct: 511 VAFDL-FRSMPCRA---DIFSYNATLKGLCMAARWDDAGELIADMVTKDCLPNEVTFNIL 566

Query: 393 IDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGV 452
           I+ LC+   ++ A   ++ +       D + Y A+I G    G + +A+ FL  +     
Sbjct: 567 INSLCQKGLVNRAIEVYEQMPKYGITPDIFTYNALINGYSEQGCLDDALKFLSTM---PC 623

Query: 453 TPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKL 500
            P+ + YN ++ G C+    ++A +++ EM +    P+ VT++  ++L
Sbjct: 624 EPDTISYNSILKGLCRAERWKDAEKLVTEMLRKNCTPNEVTFKYANQL 671



 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 131/538 (24%), Positives = 236/538 (43%), Gaps = 87/538 (16%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           + +LC   R+ +A ++   +K+ G   + VS+ TL+ GYCR G +  A +V +  R  G 
Sbjct: 126 IKKLCARRRLADAERVLEALKTSGAA-DAVSHNTLVAGYCRDGSLWDAERVLEAARASGA 184

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             N +TY+ L+                                        D  CR G +
Sbjct: 185 -ANVVTYTALI----------------------------------------DGYCRSGRL 203

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +  R+   MP      + +    ++  LC + +   A  ++  M +    P+ V++ + 
Sbjct: 204 TDALRLIASMPVAP---DTYTYNTVLKGLCFAKQWEEAEELMREMIRNNCHPNEVTFATQ 260

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +   C++G   RA +LLE+  ++G +P    Y  LV G      ++ A K+L  ML + +
Sbjct: 261 IRAFCQNGLLDRAVELLEQMPKYGCMPDVVIYSTLVNGFSEHGRVDDALKLLSTMLCRPN 320

Query: 241 VDRTRIC-NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                +C N  L+ LC+     E+  ++  M++  C P+  T +T+IN  C+    E A+
Sbjct: 321 T----VCYNAALKGLCIAGRWDEVGELIAEMVRKDCPPNDATFSTLINSLCQNRLAEYAI 376

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           +VL  M    +  PD V++ TII          +AL LL  ++ +    P  +++NAVL+
Sbjct: 377 EVLEQMQKYGY-MPDVVSYNTIISCFSEQACADDALKLLNSMLCK----PDTISFNAVLK 431

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD--------- 410
            L R  R  +A E+   ML      +  T+ I+ID LC++ Q+ +A   ++         
Sbjct: 432 CLCRAERWYDAAELMAKMLKEDCHTNEMTFNILIDSLCQNGQVKDAIEMFELMPKYRCTP 491

Query: 411 DIVWPSNI-----------------------HDNYVYAAMIKGLCRSGKIHEAVHFLYEL 447
           DIV  S++                        D + Y A +KGLC + +  +A   + ++
Sbjct: 492 DIVTYSSLINGFSEQGLDKVAFDLFRSMPCRADIFSYNATLKGLCMAARWDDAGELIADM 551

Query: 448 VDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
           V     PN V +N++I+  C+  +   A ++  +M K G+ PD  T+  L   +  +G
Sbjct: 552 VTKDCLPNEVTFNILINSLCQKGLVNRAIEVYEQMPKYGITPDIFTYNALINGYSEQG 609



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 103/403 (25%), Positives = 187/403 (46%), Gaps = 23/403 (5%)

Query: 110 LVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGH--MIDSLCRSGRNHGASRVVYVMRK 167
           L+  LC    + +  R+ E +   K+     A  H  ++   CR G    A RV+   R 
Sbjct: 125 LIKKLCARRRLADAERVLEAL---KTSGAADAVSHNTLVAGYCRDGSLWDAERVLEAARA 181

Query: 168 RGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEK 227
            G   ++V+Y +++ G C+ G    A +L+         P  +TY  +++GLC     E+
Sbjct: 182 SG-AANVVTYTALIDGYCRSGRLTDALRLIA---SMPVAPDTYTYNTVLKGLCFAKQWEE 237

Query: 228 ARKVLQFMLSKKDVDRTRICNIYLRALC---LIKNPTELLNVLVFMLQTQCQPDVITLNT 284
           A ++++ M+              +RA C   L+    ELL     M +  C PDV+  +T
Sbjct: 238 AEELMREMIRNNCHPNEVTFATQIRAFCQNGLLDRAVELLEQ---MPKYGCMPDVVIYST 294

Query: 285 VINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ 344
           ++NGF + GR+++ALK+L+ M+    C P+ V +   + GL   GR  E   L+ + M +
Sbjct: 295 LVNGFSEHGRVDDALKLLSTML----CRPNTVCYNAALKGLCIAGRWDEVGELIAE-MVR 349

Query: 345 RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 404
           +   P   T++ ++  L + R  E A EV   M   G + D  +Y  +I    E    D+
Sbjct: 350 KDCPPNDATFSTLINSLCQNRLAEYAIEVLEQMQKYGYMPDVVSYNTIISCFSEQACADD 409

Query: 405 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
           A +  + ++      D   + A++K LCR+ + ++A   + +++      N + +N++ID
Sbjct: 410 ALKLLNSMLCKP---DTISFNAVLKCLCRAERWYDAAELMAKMLKEDCHTNEMTFNILID 466

Query: 465 GACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGND 507
             C+    ++A ++   M K    PD VT+  L      +G D
Sbjct: 467 SLCQNGQVKDAIEMFELMPKYRCTPDIVTYSSLINGFSEQGLD 509



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 84/323 (26%), Positives = 155/323 (47%), Gaps = 25/323 (7%)

Query: 1   MDQLCGLSRVGE-AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCG 59
           ++ LC  +R+ E A ++   M+  G++P+VVSY T+I  +      D A K+ + M    
Sbjct: 363 INSLCQ-NRLAEYAIEVLEQMQKYGYMPDVVSYNTIISCFSEQACADDALKLLNSML--- 418

Query: 60  VLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGY 119
             P++++++ +++ + R      A  LM K+ +     ED   N   F  L+DSLC+ G 
Sbjct: 419 CKPDTISFNAVLKCLCRAERWYDAAELMAKMLK-----EDCHTNEMTFNILIDSLCQNGQ 473

Query: 120 VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           V +   + E MP+ +   +      +I+     G +  A  +   M  R     + SYN+
Sbjct: 474 VKDAIEMFELMPKYRCTPDIVTYSSLINGFSEQGLDKVAFDLFRSMPCRA---DIFSYNA 530

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM---- 235
            + GLC       A +L+ + +    LP+E T+ +L+  LC +  + +A +V + M    
Sbjct: 531 TLKGLCMAARWDDAGELIADMVTKDCLPNEVTFNILINSLCQKGLVNRAIEVYEQMPKYG 590

Query: 236 LSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 295
           ++        + N Y    CL        + L F+    C+PD I+ N+++ G C+  R 
Sbjct: 591 ITPDIFTYNALINGYSEQGCLD-------DALKFLSTMPCEPDTISYNSILKGLCRAERW 643

Query: 296 EEALKVLNDMVAGKFCAPDAVTF 318
           ++A K++ +M+  K C P+ VTF
Sbjct: 644 KDAEKLVTEML-RKNCTPNEVTF 665



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 76/146 (52%), Gaps = 5/146 (3%)

Query: 349 PGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRF 408
           P ++T N +++ L   RR+ +A+ V   +   G  AD+ ++  ++ G C    L +A+R 
Sbjct: 117 PAVITCNILIKKLCARRRLADAERVLEALKTSG-AADAVSHNTLVAGYCRDGSLWDAERV 175

Query: 409 WDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACK 468
             +    S   +   Y A+I G CRSG++ +A+  +  +    V P+   YN V+ G C 
Sbjct: 176 L-EAARASGAANVVTYTALIDGYCRSGRLTDALRLIASM---PVAPDTYTYNTVLKGLCF 231

Query: 469 LSMKREAYQILREMRKNGLNPDAVTW 494
                EA +++REM +N  +P+ VT+
Sbjct: 232 AKQWEEAEELMREMIRNNCHPNEVTF 257


>gi|224108788|ref|XP_002314968.1| predicted protein [Populus trichocarpa]
 gi|222864008|gb|EEF01139.1| predicted protein [Populus trichocarpa]
          Length = 662

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 130/471 (27%), Positives = 225/471 (47%), Gaps = 23/471 (4%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +  LC   RV  A KL  +M  +G +P+ VSYTT++   CR G+++ A ++   MR    
Sbjct: 185 LKALCKNDRVDAARKLLAEMSYKGCIPDAVSYTTVVSSMCRLGKVEEAREL--SMRIKSF 242

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P    Y+ L+ G  R   +E     +F+L+  M  E  +  +   ++ ++++L   G V
Sbjct: 243 VP---VYNALINGFCREHKMEE----VFELFNEMAVE-GIDPDVITYSTVINTLSEMGNV 294

Query: 121 NEVFRIAEDM-PQGKSVNEEFACGHMIDSLCRS----GRNHGASRVVYVMRKRGLTPSLV 175
                +   M  +G S N      H   SL +     GR   A  +   M + G  P+ V
Sbjct: 295 EMALAVLAKMFLRGCSPNV-----HTFTSLMKGYFMGGRLCEALDLWNRMIQEGSEPNTV 349

Query: 176 SYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM 235
           +YN+++HGLC +G  + A  + ++  + G  P+E TY  L++G     DL  A ++   M
Sbjct: 350 AYNTLIHGLCSYGKMVEAVSVSQKMERNGVFPNETTYSTLIDGFAKAGDLVGASEIWNKM 409

Query: 236 LSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 295
           ++   +    +    +  LC        L+++  M    C P+ IT NT I G C  G+ 
Sbjct: 410 ITNGCLPNVVVYTCMVDVLCRNSMFNHALHLIENMANGNCPPNTITFNTFIKGLCCSGKT 469

Query: 296 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN 355
           E A+KVLN M     CAP+  T+  ++ GL N  R +EAL ++ ++  +      +VTYN
Sbjct: 470 EWAMKVLNQMRQYG-CAPNVTTYNEVLDGLFNAKRTREALQIVGEI-EEMEIKSNLVTYN 527

Query: 356 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP 415
            +L G       + A ++   +L  G   DS TY  VI   C+  ++  A +  D +   
Sbjct: 528 TILSGFCHAGMFKGALQIAGKLLVGGTKPDSITYNTVIYAYCKQGEVKTAIQLVDRLTKK 587

Query: 416 SNIH-DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDG 465
              + D + Y +++ G+C    + EAV  L ++++ G+ PN   +N ++ G
Sbjct: 588 GEGYPDVFTYTSLLWGVCNWIGVDEAVVHLDKMINEGICPNRATWNALVRG 638



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 129/502 (25%), Positives = 230/502 (45%), Gaps = 21/502 (4%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D L   ++    + ++ +MK  G   NV +Y  L+   C+   +D A K+  EM + G 
Sbjct: 150 LDALLSENKFQMINGIYNNMKRDGIELNVYTYNMLLKALCKNDRVDAARKLLAEMSYKGC 209

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P++++Y+ +V  + R   VE A  L       M+ +  + V NA    L++  CRE  +
Sbjct: 210 IPDAVSYTTVVSSMCRLGKVEEAREL------SMRIKSFVPVYNA----LINGFCREHKM 259

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            EVF +  +M       +      +I++L   G    A  V+  M  RG +P++ ++ S+
Sbjct: 260 EEVFELFNEMAVEGIDPDVITYSTVINTLSEMGNVEMALAVLAKMFLRGCSPNVHTFTSL 319

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM----L 236
           + G    G    A  L    IQ G  P+   Y  L+ GLC    + +A  V Q M    +
Sbjct: 320 MKGYFMGGRLCEALDLWNRMIQEGSEPNTVAYNTLIHGLCSYGKMVEAVSVSQKMERNGV 379

Query: 237 SKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIE 296
              +   + + + + +A  L+   +E+ N    M+   C P+V+    +++  C+     
Sbjct: 380 FPNETTYSTLIDGFAKAGDLV-GASEIWNK---MITNGCLPNVVVYTCMVDVLCRNSMFN 435

Query: 297 EALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
            AL ++ +M  G  C P+ +TF T I GL   G+ + A+ +L Q M Q G +P + TYN 
Sbjct: 436 HALHLIENMANGN-CPPNTITFNTFIKGLCCSGKTEWAMKVLNQ-MRQYGCAPNVTTYNE 493

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416
           VL GLF  +R  EA ++   +  + + ++  TY  ++ G C +     A +    ++   
Sbjct: 494 VLDGLFNAKRTREALQIVGEIEEMEIKSNLVTYNTILSGFCHAGMFKGALQIAGKLLVGG 553

Query: 417 NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVT-PNIVCYNVVIDGACKLSMKREA 475
              D+  Y  +I   C+ G++  A+  +  L   G   P++  Y  ++ G C      EA
Sbjct: 554 TKPDSITYNTVIYAYCKQGEVKTAIQLVDRLTKKGEGYPDVFTYTSLLWGVCNWIGVDEA 613

Query: 476 YQILREMRKNGLNPDAVTWRIL 497
              L +M   G+ P+  TW  L
Sbjct: 614 VVHLDKMINEGICPNRATWNAL 635



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 125/455 (27%), Positives = 215/455 (47%), Gaps = 25/455 (5%)

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV- 123
           LTY+ +++ +   RD++    L+     ++ + E +S N   F  ++++  R G   +  
Sbjct: 74  LTYTTMIKRLGYERDIDGIQYLL-----QLMKLEGISCNEDLFVIVINAYRRAGLAEQAL 128

Query: 124 ---FRIAED--MPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
              +RI E    P  K  N      H++D+L    +    + +   M++ G+  ++ +YN
Sbjct: 129 KTFYRIGEFGCKPSVKIYN------HVLDALLSENKFQMINGIYNNMKRDGIELNVYTYN 182

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
            ++  LCK+     A +LL E    G +P   +Y  +V  +C    +E+AR+     LS 
Sbjct: 183 MLLKALCKNDRVDAARKLLAEMSYKGCIPDAVSYTTVVSSMCRLGKVEEARE-----LSM 237

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
           +      + N  +   C      E+  +   M      PDVIT +TVIN   +MG +E A
Sbjct: 238 RIKSFVPVYNALINGFCREHKMEEVFELFNEMAVEGIDPDVITYSTVINTLSEMGNVEMA 297

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
           L VL  M   + C+P+  TFT+++ G    GR+ EAL+L +  M Q G  P  V YN ++
Sbjct: 298 LAVLAKMFL-RGCSPNVHTFTSLMKGYFMGGRLCEALDL-WNRMIQEGSEPNTVAYNTLI 355

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
            GL    ++ EA  V   M   GV  + TTY+ +IDG  ++  L  A   W+ ++    +
Sbjct: 356 HGLCSYGKMVEAVSVSQKMERNGVFPNETTYSTLIDGFAKAGDLVGASEIWNKMITNGCL 415

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI 478
            +  VY  M+  LCR+   + A+H +  + +    PN + +N  I G C       A ++
Sbjct: 416 PNVVVYTCMVDVLCRNSMFNHALHLIENMANGNCPPNTITFNTFIKGLCCSGKTEWAMKV 475

Query: 479 LREMRKNGLNPDAVTW-RILDKLHGNRGNDFGLRI 512
           L +MR+ G  P+  T+  +LD L   +     L+I
Sbjct: 476 LNQMRQYGCAPNVTTYNEVLDGLFNAKRTREALQI 510



 Score =  144 bits (364), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 101/354 (28%), Positives = 157/354 (44%), Gaps = 41/354 (11%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           R+ EA  L+  M   G  PN V+Y TLIHG C  G+M  A  V  +M   GV PN  TYS
Sbjct: 328 RLCEALDLWNRMIQEGSEPNTVAYNTLIHGLCSYGKMVEAVSVSQKMERNGVFPNETTYS 387

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
            L+ G  +  D+  A+    ++W +M     L  N   +  +VD LCR    N    + E
Sbjct: 388 TLIDGFAKAGDLVGAS----EIWNKMITNGCLP-NVVVYTCMVDVLCRNSMFNHALHLIE 442

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
           +M  G            I  LC SG+   A +V+  MR+ G  P++ +YN ++ GL    
Sbjct: 443 NMANGNCPPNTITFNTFIKGLCCSGKTEWAMKVLNQMRQYGCAPNVTTYNEVLDGLFNAK 502

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
               A Q++ E  +     +  TY  ++ G C     + A                    
Sbjct: 503 RTREALQIVGEIEEMEIKSNLVTYNTILSGFCHAGMFKGA-------------------- 542

Query: 249 IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 308
                          L +   +L    +PD IT NTVI  +CK G ++ A+++++ +   
Sbjct: 543 ---------------LQIAGKLLVGGTKPDSITYNTVIYAYCKQGEVKTAIQLVDRLTKK 587

Query: 309 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
               PD  T+T++++G+ N   + EA+  L + M   G  P   T+NA++RGLF
Sbjct: 588 GEGYPDVFTYTSLLWGVCNWIGVDEAVVHLDK-MINEGICPNRATWNALVRGLF 640



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 114/478 (23%), Positives = 211/478 (44%), Gaps = 47/478 (9%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           MK  G   N   +  +I+ Y R G  + A K F  +   G  P+   Y+ ++  +L    
Sbjct: 99  MKLEGISCNEDLFVIVINAYRRAGLAEQALKTFYRIGEFGCKPSVKIYNHVLDALLSENK 158

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
            +  N     ++  MK  + + +N   +  L+ +LC+   V+   ++  +M     + + 
Sbjct: 159 FQMIN----GIYNNMK-RDGIELNVYTYNMLLKALCKNDRVDAARKLLAEMSYKGCIPDA 213

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
            +   ++ S+CR G+   A  +   MR +   P    YN++++G C+       ++L  E
Sbjct: 214 VSYTTVVSSMCRLGKVEEAREL--SMRIKSFVP---VYNALINGFCREHKMEEVFELFNE 268

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
               G  P   TY  ++  L    ++E A  VL  M              +LR       
Sbjct: 269 MAVEGIDPDVITYSTVINTLSEMGNVEMALAVLAKM--------------FLRG------ 308

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
                          C P+V T  +++ G+   GR+ EAL + N M+  +   P+ V + 
Sbjct: 309 ---------------CSPNVHTFTSLMKGYFMGGRLCEALDLWNRMIQ-EGSEPNTVAYN 352

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
           T+I GL + G++ EA++ + Q M + G  P   TY+ ++ G  +   +  A E++N M+ 
Sbjct: 353 TLIHGLCSYGKMVEAVS-VSQKMERNGVFPNETTYSTLIDGFAKAGDLVGASEIWNKMIT 411

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
            G + +   Y  ++D LC ++  + A    +++   +   +   +   IKGLC SGK   
Sbjct: 412 NGCLPNVVVYTCMVDVLCRNSMFNHALHLIENMANGNCPPNTITFNTFIKGLCCSGKTEW 471

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           A+  L ++   G  PN+  YN V+DG       REA QI+ E+ +  +  + VT+  +
Sbjct: 472 AMKVLNQMRQYGCAPNVTTYNEVLDGLFNAKRTREALQIVGEIEEMEIKSNLVTYNTI 529



 Score = 39.7 bits (91), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 47/247 (19%), Positives = 88/247 (35%), Gaps = 65/247 (26%)

Query: 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 384
           L N   I  AL+    +     +    +TY  +++ L   R ++  + +   M   G+  
Sbjct: 47  LKNEPNILLALHFFKSIANSNSFKHTPLTYTTMIKRLGYERDIDGIQYLLQLMKLEGISC 106

Query: 385 DSTTYAIVIDGLCESNQLDEA-KRFWD-----------------DIVWPSN-------IH 419
           +   + IVI+    +   ++A K F+                  D +   N       I+
Sbjct: 107 NEDLFVIVINAYRRAGLAEQALKTFYRIGEFGCKPSVKIYNHVLDALLSENKFQMINGIY 166

Query: 420 DN----------YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACK- 468
           +N          Y Y  ++K LC++ ++  A   L E+   G  P+ V Y  V+   C+ 
Sbjct: 167 NNMKRDGIELNVYTYNMLLKALCKNDRVDAARKLLAEMSYKGCIPDAVSYTTVVSSMCRL 226

Query: 469 --------LSMK---------------------REAYQILREMRKNGLNPDAVTWRILDK 499
                   LSM+                      E +++  EM   G++PD +T+  +  
Sbjct: 227 GKVEEARELSMRIKSFVPVYNALINGFCREHKMEEVFELFNEMAVEGIDPDVITYSTVIN 286

Query: 500 LHGNRGN 506
                GN
Sbjct: 287 TLSEMGN 293


>gi|15229026|ref|NP_190450.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75183419|sp|Q9M302.1|PP270_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g48810
 gi|7576219|emb|CAB87909.1| putative protein [Arabidopsis thaliana]
 gi|332644937|gb|AEE78458.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 659

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 134/501 (26%), Positives = 227/501 (45%), Gaps = 16/501 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D L G +R+   + ++ DMK  G  PNV +Y  L+   C+  ++D A K+  EM + G 
Sbjct: 153 LDTLLGENRIQMIYMVYRDMKRDGFEPNVFTYNVLLKALCKNNKVDGAKKLLVEMSNKGC 212

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P++++Y+ ++  +     V+       +L ER   E  +SV NA    L++ LC+E   
Sbjct: 213 CPDAVSYTTVISSMCEVGLVKEGR----ELAERF--EPVVSVYNA----LINGLCKEHDY 262

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
              F +  +M +        +   +I+ LC SG+   A   +  M KRG  P++ + +S+
Sbjct: 263 KGAFELMREMVEKGISPNVISYSTLINVLCNSGQIELAFSFLTQMLKRGCHPNIYTLSSL 322

Query: 181 VHGLCKHGGCMRAYQLLEEGIQ-FGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           V G    G    A  L  + I+ FG  P+   Y  LV+G C   ++ KA  V   M    
Sbjct: 323 VKGCFLRGTTFDALDLWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIG 382

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                R     +       +    + +   ML + C P+V+    ++   C+  + +EA 
Sbjct: 383 CSPNIRTYGSLINGFAKRGSLDGAVYIWNKMLTSGCCPNVVVYTNMVEALCRHSKFKEA- 441

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           + L ++++ + CAP   TF   I GL + GR+  A  +  Q+  Q    P IVTYN +L 
Sbjct: 442 ESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQHRCPPNIVTYNELLD 501

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
           GL +  R+EEA  +   +   GV   S+TY  ++ G C +     A +    ++      
Sbjct: 502 GLAKANRIEEAYGLTREIFMRGVEWSSSTYNTLLHGSCNAGLPGIALQLVGKMMVDGKSP 561

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG---VTPNIVCYNVVIDGACKLSMKREAY 476
           D      +I   C+ GK   A   L +LV  G     P+++ Y  VI G C+ + + +  
Sbjct: 562 DEITMNMIILAYCKQGKAERAAQML-DLVSCGRRKWRPDVISYTNVIWGLCRSNCREDGV 620

Query: 477 QILREMRKNGLNPDAVTWRIL 497
            +L  M   G+ P   TW +L
Sbjct: 621 ILLERMISAGIVPSIATWSVL 641



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 123/487 (25%), Positives = 228/487 (46%), Gaps = 30/487 (6%)

Query: 25  HVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMR----HCGVLPNSLTYSVLVRGVLRTRDV 80
           H P  +++  +I      G++D    +  +M+    HC      L  SV+   V R   +
Sbjct: 74  HTP--LTFEVMIRKLAMDGQVDSVQYLLQQMKLQGFHCS---EDLFISVI--SVYRQVGL 126

Query: 81  ERANVLMFKLWERMKEEE-DLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
               V MF    R+KE   D SV    + +++D+L  E  +  ++ +  DM +       
Sbjct: 127 AERAVEMFY---RIKEFGCDPSVK--IYNHVLDTLLGENRIQMIYMVYRDMKRDGFEPNV 181

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
           F    ++ +LC++ +  GA +++  M  +G  P  VSY +++  +C+ G       L++E
Sbjct: 182 FTYNVLLKALCKNNKVDGAKKLLVEMSNKGCCPDAVSYTTVISSMCEVG-------LVKE 234

Query: 200 GIQFG--YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLI 257
           G +    + P    Y  L+ GLC E D + A ++++ M+ K         +  +  LC  
Sbjct: 235 GRELAERFEPVVSVYNALINGLCKEHDYKGAFELMREMVEKGISPNVISYSTLINVLCNS 294

Query: 258 KNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVT 317
                  + L  ML+  C P++ TL++++ G    G   +AL + N M+ G    P+ V 
Sbjct: 295 GQIELAFSFLTQMLKRGCHPNIYTLSSLVKGCFLRGTTFDALDLWNQMIRGFGLQPNVVA 354

Query: 318 FTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCM 377
           + T++ G  + G I +A++ ++  M + G SP I TY +++ G  +   ++ A  ++N M
Sbjct: 355 YNTLVQGFCSHGNIVKAVS-VFSHMEEIGCSPNIRTYGSLINGFAKRGSLDGAVYIWNKM 413

Query: 378 LGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKI 437
           L  G   +   Y  +++ LC  ++  EA+   + +   +       + A IKGLC +G++
Sbjct: 414 LTSGCCPNVVVYTNMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRL 473

Query: 438 HEAVHFLYELVDSG-VTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRI 496
             A     ++       PNIV YN ++DG  K +   EAY + RE+   G+   + T+  
Sbjct: 474 DWAEKVFRQMEQQHRCPPNIVTYNELLDGLAKANRIEEAYGLTREIFMRGVEWSSSTYNT 533

Query: 497 LDKLHGN 503
           L  LHG+
Sbjct: 534 L--LHGS 538



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 89/364 (24%), Positives = 162/364 (44%), Gaps = 45/364 (12%)

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
           MI  L   G+      ++  M+ +G   S   + S++    + G   RA ++     +FG
Sbjct: 82  MIRKLAMDGQVDSVQYLLQQMKLQGFHCSEDLFISVISVYRQVGLAERAVEMFYRIKEFG 141

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL 264
             PS   Y  +++ L GE+                     RI  IY+             
Sbjct: 142 CDPSVKIYNHVLDTLLGEN---------------------RIQMIYM------------- 167

Query: 265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 324
            V   M +   +P+V T N ++   CK  +++ A K+L +M + K C PDAV++TT+I  
Sbjct: 168 -VYRDMKRDGFEPNVFTYNVLLKALCKNNKVDGAKKLLVEM-SNKGCCPDAVSYTTVISS 225

Query: 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 384
           +  VG ++E   L  +      + P +  YNA++ GL +    + A E+   M+  G+  
Sbjct: 226 MCEVGLVKEGRELAER------FEPVVSVYNALINGLCKEHDYKGAFELMREMVEKGISP 279

Query: 385 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN-YVYAAMIKGLCRSGKIHEAVHF 443
           +  +Y+ +I+ LC S Q++ A  F   ++     H N Y  ++++KG    G   +A+  
Sbjct: 280 NVISYSTLINVLCNSGQIELAFSFLTQML-KRGCHPNIYTLSSLVKGCFLRGTTFDALDL 338

Query: 444 LYELVDS-GVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
             +++   G+ PN+V YN ++ G C      +A  +   M + G +P+  T+  L     
Sbjct: 339 WNQMIRGFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSLINGFA 398

Query: 503 NRGN 506
            RG+
Sbjct: 399 KRGS 402



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 119/240 (49%), Gaps = 19/240 (7%)

Query: 274 QCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKF-CAPDAVTFTTIIFGLLNVGRIQ 332
            C  D+    +VI+ + ++G  E A+++   +   +F C P    +  ++  LL   RIQ
Sbjct: 108 HCSEDLFI--SVISVYRQVGLAERAVEMFYRI--KEFGCDPSVKIYNHVLDTLLGENRIQ 163

Query: 333 EALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIV 392
             + ++Y+ M + G+ P + TYN +L+ L +  +V+ AK++   M   G   D+ +Y  V
Sbjct: 164 -MIYMVYRDMKRDGFEPNVFTYNVLLKALCKNNKVDGAKKLLVEMSNKGCCPDAVSYTTV 222

Query: 393 IDGLCESNQLDE----AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELV 448
           I  +CE   + E    A+RF + +V         VY A+I GLC+      A   + E+V
Sbjct: 223 ISSMCEVGLVKEGRELAERF-EPVV--------SVYNALINGLCKEHDYKGAFELMREMV 273

Query: 449 DSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGNDF 508
           + G++PN++ Y+ +I+  C       A+  L +M K G +P+  T   L K    RG  F
Sbjct: 274 EKGISPNVISYSTLINVLCNSGQIELAFSFLTQMLKRGCHPNIYTLSSLVKGCFLRGTTF 333


>gi|302772597|ref|XP_002969716.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
 gi|300162227|gb|EFJ28840.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
          Length = 457

 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 119/470 (25%), Positives = 217/470 (46%), Gaps = 42/470 (8%)

Query: 28  NVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLM 87
             +SY  L+    ++G  D  Y  +++M   G +PN+ TY  L+R + + +  E A  + 
Sbjct: 16  GTLSYNYLLEVLAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYLLRSLCQAQRFEEARSVF 75

Query: 88  FKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMID 147
                R    +  S N  +++ L+  LCR   V+E   +  +M  G         G ++ 
Sbjct: 76  -----RGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLS 130

Query: 148 SLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLP 207
            LC+ G+   A  +   M  RG  P  V YN ++ G  K G    AY+L EE ++ G +P
Sbjct: 131 GLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIP 190

Query: 208 SEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVL 267
           +  TY  L+ G   + +  + + +       KD                           
Sbjct: 191 TVFTYNSLLSGFSRKGEFGRVQSLF------KD--------------------------- 217

Query: 268 VFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLN 327
             ML+  C P++ T N +++GFCKMG + EA ++  +M +   C PD V++ T++ G+ +
Sbjct: 218 --MLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLG-CPPDVVSYNTLMRGMCS 274

Query: 328 VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADST 387
            G+  EA  LL + M + G  P IV+YN ++ G  +   ++ A ++F  +   G+  D+ 
Sbjct: 275 KGKPHEAQRLLRE-MIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAF 333

Query: 388 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYEL 447
           +Y+ +ID LC + ++  A   + D++   +  D  V   ++ GLCR  ++ E+      +
Sbjct: 334 SYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCRGERLTESCELFQAM 393

Query: 448 VDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           V     P I  YN+++   CK     +  +I  E+ + G +PD    +++
Sbjct: 394 VKFECVPLIPEYNLLMYKLCKAKRSDDVCEIFHELTERGFSPDVEISKVI 443



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 112/456 (24%), Positives = 200/456 (43%), Gaps = 42/456 (9%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           R    +  + DM   G VPN  +Y  L+   C+    + A  VF  M   G  PN  +YS
Sbjct: 32  RCDHVYGTYNDMLGAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGMAAQGCSPNVFSYS 91

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
           +L+ G+ R + V+ A  L+ ++ +   +      N   + +L+  LC+ G + E   +  
Sbjct: 92  ILIAGLCRGQKVDEAAELLNEMIDGGHQP-----NVVTYGSLLSGLCKMGKLKEAVDL-- 144

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
                                         SR+VY    RG  P  V YN ++ G  K G
Sbjct: 145 -----------------------------FSRMVY----RGCPPDGVVYNVLIDGFSKKG 171

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
               AY+L EE ++ G +P+  TY  L+ G   + +  + + + + ML +  V      N
Sbjct: 172 DMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFN 231

Query: 249 IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 308
             L   C + +  E   + + M    C PDV++ NT++ G C  G+  EA ++L +M+  
Sbjct: 232 NLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLMRGMCSKGKPHEAQRLLREMIRS 291

Query: 309 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE 368
               PD V++  +I G    G +  A+ L Y++ P+ G  P   +Y+ ++  L R  +V 
Sbjct: 292 GV-GPDIVSYNILIDGYSKSGALDHAIKLFYEI-PKSGLEPDAFSYSTIIDCLCRAGKVG 349

Query: 369 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI 428
            A  VF  M+  G   D+     ++ GLC   +L E+   +  +V    +     Y  ++
Sbjct: 350 AAFVVFKDMIANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVKFECVPLIPEYNLLM 409

Query: 429 KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
             LC++ +  +     +EL + G +P++    V+++
Sbjct: 410 YKLCKAKRSDDVCEIFHELTERGFSPDVEISKVILE 445



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 99/404 (24%), Positives = 189/404 (46%), Gaps = 7/404 (1%)

Query: 3   QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
            LC   R  EA  +F  M ++G  PNV SY+ LI G CR  ++D A ++ +EM   G  P
Sbjct: 61  SLCQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQP 120

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           N +TY  L+ G+ +   ++ A  L  ++  R         +   +  L+D   ++G + E
Sbjct: 121 NVVTYGSLLSGLCKMGKLKEAVDLFSRMVYR-----GCPPDGVVYNVLIDGFSKKGDMGE 175

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
            +R+ E+M +   +   F    ++    R G       +   M ++G  P++ ++N+++ 
Sbjct: 176 AYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLD 235

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           G CK G  + A++L  E    G  P   +Y  L+ G+C +    +A+++L+ M+      
Sbjct: 236 GFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLMRGMCSKGKPHEAQRLLREMIRSGVGP 295

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
                NI +            + +   + ++  +PD  + +T+I+  C+ G++  A  V 
Sbjct: 296 DIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVF 355

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
            DM+A    APDA     ++ GL    R+ E+   L+Q M +    P I  YN ++  L 
Sbjct: 356 KDMIANG-SAPDAAVVIPLVIGLCRGERLTESCE-LFQAMVKFECVPLIPEYNLLMYKLC 413

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
           + +R ++  E+F+ +   G   D     ++++ L  S+  + A+
Sbjct: 414 KAKRSDDVCEIFHELTERGFSPDVEISKVILETLRRSDDKEAAE 457



 Score =  137 bits (346), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 82/298 (27%), Positives = 145/298 (48%), Gaps = 2/298 (0%)

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
           G Q  Y     +Y  L+E L      +        ML    V  T      LR+LC  + 
Sbjct: 8   GSQVHYNHGTLSYNYLLEVLAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYLLRSLCQAQR 67

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
             E  +V   M    C P+V + + +I G C+  +++EA ++LN+M+ G    P+ VT+ 
Sbjct: 68  FEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGH-QPNVVTYG 126

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
           +++ GL  +G+++EA++L +  M  RG  P  V YN ++ G  +   + EA  +F  ML 
Sbjct: 127 SLLSGLCKMGKLKEAVDL-FSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLE 185

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
            G +    TY  ++ G     +    +  + D++    + + + +  ++ G C+ G + E
Sbjct: 186 KGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVE 245

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           A     E+   G  P++V YN ++ G C      EA ++LREM ++G+ PD V++ IL
Sbjct: 246 AHRLFLEMRSLGCPPDVVSYNTLMRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNIL 303



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 112/228 (49%), Gaps = 5/228 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C +  + EAH+LF +M+S G  P+VVSY TL+ G C  G+   A ++  EM   GV
Sbjct: 234 LDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLMRGMCSKGKPHEAQRLLREMIRSGV 293

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ ++Y++L+ G  ++  ++ A  L +++ +   E +  S     ++ ++D LCR G V
Sbjct: 294 GPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFS-----YSTIIDCLCRAGKV 348

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
              F + +DM    S  +      ++  LCR  R   +  +   M K    P +  YN +
Sbjct: 349 GAAFVVFKDMIANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVKFECVPLIPEYNLL 408

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKA 228
           ++ LCK        ++  E  + G+ P     KV++E L    D E A
Sbjct: 409 MYKLCKAKRSDDVCEIFHELTERGFSPDVEISKVILETLRRSDDKEAA 456



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 60/172 (34%), Positives = 90/172 (52%), Gaps = 3/172 (1%)

Query: 339 YQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE 398
           Y  M   G  P   TY  +LR L + +R EEA+ VF  M   G   +  +Y+I+I GLC 
Sbjct: 40  YNDMLGAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCR 99

Query: 399 SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVC 458
             ++DEA    ++++   +  +   Y +++ GLC+ GK+ EAV     +V  G  P+ V 
Sbjct: 100 GQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVV 159

Query: 459 YNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG-NRGNDFG 509
           YNV+IDG  K     EAY++  EM + G  P   T+  L  L G +R  +FG
Sbjct: 160 YNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSL--LSGFSRKGEFG 209


>gi|115486223|ref|NP_001068255.1| Os11g0607100 [Oryza sativa Japonica Group]
 gi|77551887|gb|ABA94684.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113645477|dbj|BAF28618.1| Os11g0607100 [Oryza sativa Japonica Group]
          Length = 671

 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 129/447 (28%), Positives = 211/447 (47%), Gaps = 8/447 (1%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           R+ EA  +  +M+S G    V +   ++     TG    A KVFD M   GV P+  ++ 
Sbjct: 126 RLPEAADMVLEMRSHGLPLCVETANWVLRVGLETGSFVYARKVFDGMTRAGVCPDERSFR 185

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
            LV    R   VE  + L+  +W         S++NA    +V SLC +G   +V     
Sbjct: 186 ALVVVCCREGKVEEVDALLAAMWRY-----GFSLDNATCTVVVRSLCEKGRFKDVSEFFR 240

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
            M +  +          ID LC+      A  V+  M  RGL P++ ++ +++ GLCK G
Sbjct: 241 RMLETGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDGLCKIG 300

Query: 189 GCMRAYQLLEEGIQ-FGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC 247
              RA++L  + I+   Y P+ HTY V++ G C E  L +A  +L  M+ +     T   
Sbjct: 301 WTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNTY 360

Query: 248 NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA 307
              +   C   +      ++  M Q    P++ T N VI+GFCK G+I+EA KVL  M  
Sbjct: 361 TTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVLR-MAT 419

Query: 308 GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRV 367
            +    D +T+T +I      G I  AL+ L+  M + G  P I  Y +++    + R++
Sbjct: 420 SQGLKFDKITYTILITEHCKQGHITYALD-LFDRMVENGCCPDIEAYTSLISTYCQQRQM 478

Query: 368 EEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAM 427
           EE+++ F+  L IG++    TY  +I G C+  +   A R ++ +V      D+  Y A+
Sbjct: 479 EESQKFFDKCLMIGLLPTKQTYTSMIAGYCKVGRSTLALRVFERMVQNGCFADSITYGAL 538

Query: 428 IKGLCRSGKIHEAVHFLYELVDSGVTP 454
           I GLC+  ++ EA      ++D  + P
Sbjct: 539 ISGLCKESRLEEAKALYEGMLDKRLVP 565



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 118/464 (25%), Positives = 212/464 (45%), Gaps = 48/464 (10%)

Query: 3   QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
            LC   R  +  + F  M   G  PNVV+YT  I G C+   +  A+ V +EM   G+ P
Sbjct: 225 SLCEKGRFKDVSEFFRRMLETGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKP 284

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           N  T++ L+ G+ +    ERA    F+L+ ++ +      N   +  ++   CREG    
Sbjct: 285 NVYTHTTLIDGLCKIGWTERA----FRLFLKLIKSSSYKPNVHTYTVMIGGYCREG---- 336

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
                                     L R      A  ++  M ++GL P+  +Y +++ 
Sbjct: 337 -------------------------KLAR------AEMLLVRMVEQGLKPNTNTYTTLIG 365

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           G CK G   RA++L+ +  Q G+LP+ +TY  +++G C +  +++A KVL+ M + + + 
Sbjct: 366 GHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVLR-MATSQGLK 424

Query: 243 RTRIC-NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
             +I   I +   C   + T  L++   M++  C PD+    ++I+ +C+  ++EE+ K 
Sbjct: 425 FDKITYTILITEHCKQGHITYALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEESQKF 484

Query: 302 LND-MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
            +  ++ G    P   T+T++I G   VGR   AL  +++ M Q G     +TY A++ G
Sbjct: 485 FDKCLMIGLL--PTKQTYTSMIAGYCKVGRSTLALR-VFERMVQNGCFADSITYGALISG 541

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L +  R+EEAK ++  ML   +V    T   +    C   +   A    D +     +H 
Sbjct: 542 LCKESRLEEAKALYEGMLDKRLVPCEVTRVTLTFEYCRREKTSIAVSVLDRLDKRQQVHT 601

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
             V   +++ L   G +  A  FL +++D     +   Y   I+
Sbjct: 602 VDV---VVRKLSALGDVDAASLFLKKVLDEDYAVDHATYTGFIN 642



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/346 (26%), Positives = 158/346 (45%), Gaps = 1/346 (0%)

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
           M+ +   +GR   A+ +V  MR  GL   + + N ++    + G  + A ++ +   + G
Sbjct: 117 MVAAFGEAGRLPEAADMVLEMRSHGLPLCVETANWVLRVGLETGSFVYARKVFDGMTRAG 176

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL 264
             P E +++ LV   C E  +E+   +L  M           C + +R+LC      ++ 
Sbjct: 177 VCPDERSFRALVVVCCREGKVEEVDALLAAMWRYGFSLDNATCTVVVRSLCEKGRFKDVS 236

Query: 265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 324
                ML+T   P+V+     I+G CK   +++A  VL +MV G+   P+  T TT+I G
Sbjct: 237 EFFRRMLETGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMV-GRGLKPNVYTHTTLIDG 295

Query: 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 384
           L  +G  + A  L  +++    Y P + TY  ++ G  R  ++  A+ +   M+  G+  
Sbjct: 296 LCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKP 355

Query: 385 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFL 444
           ++ TY  +I G C+    D A    + +     + + Y Y A+I G C+ GKI EA   L
Sbjct: 356 NTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVL 415

Query: 445 YELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD 490
                 G+  + + Y ++I   CK      A  +   M +NG  PD
Sbjct: 416 RMATSQGLKFDKITYTILITEHCKQGHITYALDLFDRMVENGCCPD 461



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 103/402 (25%), Positives = 177/402 (44%), Gaps = 11/402 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEM-RHCG 59
           +D LC    V +A  +  +M  RG  PNV ++TTLI G C+ G  + A+++F ++ +   
Sbjct: 258 IDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDGLCKIGWTERAFRLFLKLIKSSS 317

Query: 60  VLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGY 119
             PN  TY+V++ G  R   + RA +L+ ++ E     + L  N   +  L+   C+ G 
Sbjct: 318 YKPNVHTYTVMIGGYCREGKLARAEMLLVRMVE-----QGLKPNTNTYTTLIGGHCKGGS 372

Query: 120 VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
            +  F +   M Q   +   +    +ID  C+ G+   A +V+ +   +GL    ++Y  
Sbjct: 373 FDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYTI 432

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++   CK G    A  L +  ++ G  P    Y  L+   C +  +E+++K     L   
Sbjct: 433 LITEHCKQGHITYALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEESQKFFDKCLMIG 492

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
            +   +     +   C +   T  L V   M+Q  C  D IT   +I+G CK  R+EEA 
Sbjct: 493 LLPTKQTYTSMIAGYCKVGRSTLALRVFERMVQNGCFADSITYGALISGLCKESRLEEA- 551

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           K L + +  K   P  VT  T+ F        +E  ++   V+ +      + T + V+R
Sbjct: 552 KALYEGMLDKRLVPCEVTRVTLTFEYCR----REKTSIAVSVLDRLDKRQQVHTVDVVVR 607

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ 401
            L  L  V+ A      +L      D  TY   I+   E+N+
Sbjct: 608 KLSALGDVDAASLFLKKVLDEDYAVDHATYTGFINSCYENNR 649



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/266 (28%), Positives = 121/266 (45%), Gaps = 38/266 (14%)

Query: 277 PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALN 336
           PD  +   ++   C+ G++EE   +L  M    F + D  T T ++  L   GR ++ ++
Sbjct: 179 PDERSFRALVVVCCREGKVEEVDALLAAMWRYGF-SLDNATCTVVVRSLCEKGRFKD-VS 236

Query: 337 LLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 396
             ++ M + G  P +V Y A + GL + R V++A  V   M+G G+  +  T+  +IDGL
Sbjct: 237 EFFRRMLETGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDGL 296

Query: 397 CESNQLDEAKRFWDDIVWPSNIHDN-YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN 455
           C+    + A R +  ++  S+   N + Y  MI G CR GK+  A   L  +V+ G+ PN
Sbjct: 297 CKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPN 356

Query: 456 -----------------------------------IVCYNVVIDGACKLSMKREAYQILR 480
                                              I  YN VIDG CK    +EAY++LR
Sbjct: 357 TNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVLR 416

Query: 481 EMRKNGLNPDAVTWRILDKLHGNRGN 506
                GL  D +T+ IL   H  +G+
Sbjct: 417 MATSQGLKFDKITYTILITEHCKQGH 442


>gi|115447573|ref|NP_001047566.1| Os02g0644600 [Oryza sativa Japonica Group]
 gi|49387609|dbj|BAD25805.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|49388661|dbj|BAD25796.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113537097|dbj|BAF09480.1| Os02g0644600 [Oryza sativa Japonica Group]
          Length = 526

 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 136/517 (26%), Positives = 233/517 (45%), Gaps = 66/517 (12%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           MD LC   R+ EA KL  +   +G  P+V  Y+ LI  YC+ G +  A   ++ M   G+
Sbjct: 7   MDGLCKEMRLDEAEKLLENKARQGSNPDVYGYSYLIQSYCKMGNLIKAVDHYEAMVSHGI 66

Query: 61  LPNSLTYSVLV---RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCRE 117
             N    S L+   R +  T +V  A  L FK       +  L ++   +   +D+ C+ 
Sbjct: 67  ETNCHIVSYLLQCFRKLGMTSEV-IAYFLKFK-------DSGLHLDKVIYNIAMDTYCKN 118

Query: 118 GYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
           G +NE  ++  +M  G    ++     +I+  C  G    A +V   M K  + P +V+Y
Sbjct: 119 GNMNEAVKLLNEMKCGGLTPDKIHYTCLINGYCLKGEMQNAQQVFEEMLKANIEPDIVTY 178

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
           N +  G CK G  M  + LL+     G  P+  TY + + G C   +L +A +VL  ++ 
Sbjct: 179 NILASGFCKSGLVMEVFDLLDRMADHGLEPNSLTYGIAIVGFCRGGNLSEA-EVLFNVVE 237

Query: 238 KKDVDRTRI------------------------------------CNIYLRALCLIKNPT 261
           +K +D   +                                    C+  +  LC + N  
Sbjct: 238 EKGIDHIEVMYSSMVCGYLLSGWTDHAYMLFVRVARQGNLVDHFSCSKLINDLCRVGNVQ 297

Query: 262 ELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTI 321
              NV   ML+    PDVI+ + +I+ +C+ G +++A    +DMV  +  + D + +T +
Sbjct: 298 GASNVCKIMLEHNVVPDVISYSKLISIYCQNGDMDKAHLWFHDMVQ-RGLSIDVIVYTIL 356

Query: 322 IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR--LRRVEE--AKE----- 372
           + G    GR+QEA  L  Q M   G  P ++ Y  +L G  +  L++  E  AKE     
Sbjct: 357 MNGYCKAGRLQEACQLFVQ-MTNLGIKPDVIAYTVLLDGHLKETLQQGWEGIAKERRSFL 415

Query: 373 -------VFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYA 425
                  + + M  + +  D   Y ++IDG C++  L EA+  +D+++      D Y Y 
Sbjct: 416 LRANHNKLLSSMKDMQIEPDVPCYTVLIDGKCKAEYLVEARELFDEMLQKGLTPDAYAYT 475

Query: 426 AMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVV 462
           A+I G C  G+I +A   L E++D G+ P+ + ++V+
Sbjct: 476 ALINGYCSQGEISKAEDLLQEMIDKGIEPDELTFSVL 512



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 101/413 (24%), Positives = 188/413 (45%), Gaps = 37/413 (8%)

Query: 106 AFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGR----------- 154
           A+  ++D LC+E  ++E  ++ E+  +  S  + +   ++I S C+ G            
Sbjct: 2   AYNMVMDGLCKEMRLDEAEKLLENKARQGSNPDVYGYSYLIQSYCKMGNLIKAVDHYEAM 61

Query: 155 -NHG-------ASRVVYVMRKRGLTPSLVSY----------------NSIVHGLCKHGGC 190
            +HG        S ++   RK G+T  +++Y                N  +   CK+G  
Sbjct: 62  VSHGIETNCHIVSYLLQCFRKLGMTSEVIAYFLKFKDSGLHLDKVIYNIAMDTYCKNGNM 121

Query: 191 MRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIY 250
             A +LL E    G  P +  Y  L+ G C + +++ A++V + ML           NI 
Sbjct: 122 NEAVKLLNEMKCGGLTPDKIHYTCLINGYCLKGEMQNAQQVFEEMLKANIEPDIVTYNIL 181

Query: 251 LRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKF 310
               C      E+ ++L  M     +P+ +T    I GFC+ G + EA +VL ++V  K 
Sbjct: 182 ASGFCKSGLVMEVFDLLDRMADHGLEPNSLTYGIAIVGFCRGGNLSEA-EVLFNVVEEKG 240

Query: 311 CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEA 370
                V +++++ G L  G    A  L  +V  Q G      + + ++  L R+  V+ A
Sbjct: 241 IDHIEVMYSSMVCGYLLSGWTDHAYMLFVRVARQ-GNLVDHFSCSKLINDLCRVGNVQGA 299

Query: 371 KEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKG 430
             V   ML   VV D  +Y+ +I   C++  +D+A  ++ D+V      D  VY  ++ G
Sbjct: 300 SNVCKIMLEHNVVPDVISYSKLISIYCQNGDMDKAHLWFHDMVQRGLSIDVIVYTILMNG 359

Query: 431 LCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
            C++G++ EA     ++ + G+ P+++ Y V++DG  K ++++    I +E R
Sbjct: 360 YCKAGRLQEACQLFVQMTNLGIKPDVIAYTVLLDGHLKETLQQGWEGIAKERR 412



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 87/358 (24%), Positives = 155/358 (43%), Gaps = 37/358 (10%)

Query: 175 VSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQF 234
           ++YN ++ GLCK      A +LLE   + G  P  + Y  L++  C   +L KA    + 
Sbjct: 1   MAYNMVMDGLCKEMRLDEAEKLLENKARQGSNPDVYGYSYLIQSYCKMGNLIKAVDHYEA 60

Query: 235 MLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGR 294
           M+S        I +  L+    +   +E++   +    +    D +  N  ++ +CK G 
Sbjct: 61  MVSHGIETNCHIVSYLLQCFRKLGMTSEVIAYFLKFKDSGLHLDKVIYNIAMDTYCKNGN 120

Query: 295 IEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTY 354
           + EA+K+LN+M  G    PD + +T +I G    G +Q A  + ++ M +    P IVTY
Sbjct: 121 MNEAVKLLNEMKCGGL-TPDKIHYTCLINGYCLKGEMQNAQQV-FEEMLKANIEPDIVTY 178

Query: 355 NAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRF------ 408
           N +  G  +   V E  ++ + M   G+  +S TY I I G C    L EA+        
Sbjct: 179 NILASGFCKSGLVMEVFDLLDRMADHGLEPNSLTYGIAIVGFCRGGNLSEAEVLFNVVEE 238

Query: 409 ---------------------WDD--------IVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
                                W D        +    N+ D++  + +I  LCR G +  
Sbjct: 239 KGIDHIEVMYSSMVCGYLLSGWTDHAYMLFVRVARQGNLVDHFSCSKLINDLCRVGNVQG 298

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           A +    +++  V P+++ Y+ +I   C+     +A+    +M + GL+ D + + IL
Sbjct: 299 ASNVCKIMLEHNVVPDVISYSKLISIYCQNGDMDKAHLWFHDMVQRGLSIDVIVYTIL 356



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 48/81 (59%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C    + EA +LF +M  +G  P+  +YT LI+GYC  GE+  A  +  EM   G+
Sbjct: 443 IDGKCKAEYLVEARELFDEMLQKGLTPDAYAYTALINGYCSQGEISKAEDLLQEMIDKGI 502

Query: 61  LPNSLTYSVLVRGVLRTRDVE 81
            P+ LT+SVL +  LR+R ++
Sbjct: 503 EPDELTFSVLNQSSLRSRKIQ 523


>gi|255566084|ref|XP_002524030.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536757|gb|EEF38398.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1016

 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 141/620 (22%), Positives = 273/620 (44%), Gaps = 140/620 (22%)

Query: 6   GLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSL 65
           GL++ GE  ++  ++ S G   +V+ + TLI GYC+ GEM +A  + + MR  G+L + +
Sbjct: 126 GLAKYGE--RIMDNLVSGGTCKDVIGFNTLIDGYCKAGEMSLALDLVERMRKEGLLSDIV 183

Query: 66  TYSVLVRGVLRTRDVERANVLM--------------FKLWERMKEEEDLSVNN--AAFAN 109
           +Y+ L+ G  +  + ++A  L+              F + +R+K++++L++      +  
Sbjct: 184 SYNTLINGFCKRGEYDKAKSLLHEISESRGVKDSVFFNIDDRIKKDDNLNLEADLITYTT 243

Query: 110 LVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRG 169
           ++ + C++  + E   + E+M     + +      +++ LC+ GR   A  ++  M+K G
Sbjct: 244 IISTYCKQHGLEEARALYEEMIINGFLPDVVTYSSIVNGLCKDGRLSEAQELLREMKKMG 303

Query: 170 LTPSLVSYNSIVHGLCKHGGCMRAY----QLLEEGI------------------------ 201
           + P+ V+Y +++  L K G    A+    QL+  G+                        
Sbjct: 304 VDPNHVAYTTLIDSLFKAGSAWEAFACQSQLVVRGMTLDLVMCTTLVDGLFKSSKPKEAE 363

Query: 202 -------QFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK----KDVDRTRICNIY 250
                  +   +P+  TY  L++G C   D+E+   +LQ M  K      +  + I N Y
Sbjct: 364 DMFRALSKLNLIPNSITYTALIDGYCKVGDMERVESLLQEMEEKHINPNVITYSSIINGY 423

Query: 251 LRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM----- 305
            +   L     E +NV+  ML     P+      +I+G+CK G+ E A  + N+M     
Sbjct: 424 TKKGIL----DEAINVMKKMLDQNIIPNAYVYAILIDGYCKAGKQEIATDLYNEMKLSGL 479

Query: 306 -----------------------------VAGKFCAPDAVTFTTIIFGLLNVGRIQEALN 336
                                        V  +    D V +T+++ G    G+   ALN
Sbjct: 480 KVNNVLFDVLVNNLKRGKRMDEAEELLKDVTSRGLLLDHVNYTSLMDGFFKAGKESAALN 539

Query: 337 LLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 396
           ++ + M ++     +VTYN ++ GL    +  EAK V++ M+ +G+  +  TY I+I   
Sbjct: 540 MVEE-MTEKSIPFDVVTYNVLINGLLEHGKY-EAKSVYSGMIEMGLAPNQATYNIMIKAY 597

Query: 397 CESNQLDEAKRFWDDI----VWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGV 452
           C+  +LD A   W+++    + PS+I  N     ++ GL  +G+I +A++ L E+   G+
Sbjct: 598 CKQGELDNALELWNEMKSHKIMPSSITCN----TLVVGLSEAGEIEKAMNVLNEMSVMGI 653

Query: 453 TPNIVCYNVVIDGA-----------------------------------CKLSMKREAYQ 477
            PN+V + V+++ +                                   C+L M ++A  
Sbjct: 654 HPNLVIHRVLLNASSKSGKANAVLQMHEQLVDMGLKINQEAYNNLIVVFCRLRMTKKATS 713

Query: 478 ILREMRKNGLNPDAVTWRIL 497
           +L+ M ++G   D VT+  L
Sbjct: 714 VLKYMIRDGFVADTVTYNAL 733



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 129/538 (23%), Positives = 247/538 (45%), Gaps = 43/538 (7%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGE-----------------MD 46
           LC   R+ EA +L  +MK  G  PN V+YTTLI    + G                  +D
Sbjct: 283 LCKDGRLSEAQELLREMKKMGVDPNHVAYTTLIDSLFKAGSAWEAFACQSQLVVRGMTLD 342

Query: 47  V------------------AYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMF 88
           +                  A  +F  +    ++PNS+TY+ L+ G  +  D+ER   L+ 
Sbjct: 343 LVMCTTLVDGLFKSSKPKEAEDMFRALSKLNLIPNSITYTALIDGYCKVGDMERVESLLQ 402

Query: 89  KLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDS 148
           ++     EE+ ++ N   ++++++   ++G ++E   + + M     +   +    +ID 
Sbjct: 403 EM-----EEKHINPNVITYSSIINGYTKKGILDEAINVMKKMLDQNIIPNAYVYAILIDG 457

Query: 149 LCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPS 208
            C++G+   A+ +   M+  GL  + V ++ +V+ L +      A +LL++    G L  
Sbjct: 458 YCKAGKQEIATDLYNEMKLSGLKVNNVLFDVLVNNLKRGKRMDEAEELLKDVTSRGLLLD 517

Query: 209 EHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLV 268
              Y  L++G         A  +++ M  K         N+ +  L L     E  +V  
Sbjct: 518 HVNYTSLMDGFFKAGKESAALNMVEEMTEKSIPFDVVTYNVLINGL-LEHGKYEAKSVYS 576

Query: 269 FMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNV 328
            M++    P+  T N +I  +CK G ++ AL++ N+M + K   P ++T  T++ GL   
Sbjct: 577 GMIEMGLAPNQATYNIMIKAYCKQGELDNALELWNEMKSHKI-MPSSITCNTLVVGLSEA 635

Query: 329 GRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTT 388
           G I++A+N+L + M   G  P +V +  +L    +  +     ++   ++ +G+  +   
Sbjct: 636 GEIEKAMNVLNE-MSVMGIHPNLVIHRVLLNASSKSGKANAVLQMHEQLVDMGLKINQEA 694

Query: 389 YAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELV 448
           Y  +I   C      +A      ++    + D   Y A+I+G C S  + +A+    +++
Sbjct: 695 YNNLIVVFCRLRMTKKATSVLKYMIRDGFVADTVTYNALIRGYCESSHVKKALATYTQML 754

Query: 449 DSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           + GV+PNIV YN+++ G     +  E  ++  +M++NGLNPDA T+  L   +G  GN
Sbjct: 755 NEGVSPNIVTYNLLLGGLLGAGLMAERDELFDKMKENGLNPDASTYDTLISGYGKIGN 812



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 128/510 (25%), Positives = 236/510 (46%), Gaps = 68/510 (13%)

Query: 10  VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSV 69
           V +   ++ +M      PNV ++  L+H +C+ G + +A    D +R+  V  +++TY+ 
Sbjct: 26  VSQVCDIYTEMLCSAVPPNVYTHNVLVHAWCKMGNLILA---LDLLRNVDVEVDTVTYNT 82

Query: 70  LVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAED 129
           ++ G  +   V +A    F     M  ++D   +      LV   CR G      RI ++
Sbjct: 83  VIWGFCQHGLVNQA----FGFLSIMV-KKDTCFDTITCNILVKGFCRIGLAKYGERIMDN 137

Query: 130 MPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG 189
           +  G +  +      +ID  C++G    A  +V  MRK GL   +VSYN++++G CK G 
Sbjct: 138 LVSGGTCKDVIGFNTLIDGYCKAGEMSLALDLVERMRKEGLLSDIVSYNTLINGFCKRGE 197

Query: 190 CMRAYQLLEE-----GIQ----------------FGYLPSEHTYKVLVEGLCGESDLEKA 228
             +A  LL E     G++                        TY  ++   C +  LE+A
Sbjct: 198 YDKAKSLLHEISESRGVKDSVFFNIDDRIKKDDNLNLEADLITYTTIISTYCKQHGLEEA 257

Query: 229 RKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVING 288
           R + + M          I N +L                         PDV+T ++++NG
Sbjct: 258 RALYEEM----------IINGFL-------------------------PDVVTYSSIVNG 282

Query: 289 FCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYS 348
            CK GR+ EA ++L +M       P+ V +TT+I  L   G   EA     Q++  RG +
Sbjct: 283 LCKDGRLSEAQELLREM-KKMGVDPNHVAYTTLIDSLFKAGSAWEAFACQSQLVV-RGMT 340

Query: 349 PGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRF 408
             +V    ++ GLF+  + +EA+++F  +  + ++ +S TY  +IDG C+   ++  +  
Sbjct: 341 LDLVMCTTLVDGLFKSSKPKEAEDMFRALSKLNLIPNSITYTALIDGYCKVGDMERVESL 400

Query: 409 WDDIVWPSNIHDNYV-YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGAC 467
             ++    +I+ N + Y+++I G  + G + EA++ + +++D  + PN   Y ++IDG C
Sbjct: 401 LQEM-EEKHINPNVITYSSIINGYTKKGILDEAINVMKKMLDQNIIPNAYVYAILIDGYC 459

Query: 468 KLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           K   +  A  +  EM+ +GL  + V + +L
Sbjct: 460 KAGKQEIATDLYNEMKLSGLKVNNVLFDVL 489



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 119/478 (24%), Positives = 220/478 (46%), Gaps = 24/478 (5%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M+    VP ++ +  LI+ +   G +     ++ EM    V PN  T++VLV    +  +
Sbjct: 1   MRKHNIVPTLLLWNQLIYHFNAFGLVSQVCDIYTEMLCSAVPPNVYTHNVLVHAWCKMGN 60

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
           +    +L   L   +    D+ V+   +  ++   C+ G VN+ F     M +  +  + 
Sbjct: 61  L----ILALDLLRNV----DVEVDTVTYNTVIWGFCQHGLVNQAFGFLSIMVKKDTCFDT 112

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
             C  ++   CR G      R++  +   G    ++ +N+++ G CK G    A  L+E 
Sbjct: 113 ITCNILVKGFCRIGLAKYGERIMDNLVSGGTCKDVIGFNTLIDGYCKAGEMSLALDLVER 172

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
             + G L    +Y  L+ G C   + +KA+ +L  +   + V  +   NI  R    IK 
Sbjct: 173 MRKEGLLSDIVSYNTLINGFCKRGEYDKAKSLLHEISESRGVKDSVFFNIDDR----IKK 228

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
              L            + D+IT  T+I+ +CK   +EEA  +  +M+   F  PD VT++
Sbjct: 229 DDNL----------NLEADLITYTTIISTYCKQHGLEEARALYEEMIINGFL-PDVVTYS 277

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
           +I+ GL   GR+ EA  LL + M + G  P  V Y  ++  LF+     EA    + ++ 
Sbjct: 278 SIVNGLCKDGRLSEAQELLRE-MKKMGVDPNHVAYTTLIDSLFKAGSAWEAFACQSQLVV 336

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
            G+  D      ++DGL +S++  EA+  +  +   + I ++  Y A+I G C+ G +  
Sbjct: 337 RGMTLDLVMCTTLVDGLFKSSKPKEAEDMFRALSKLNLIPNSITYTALIDGYCKVGDMER 396

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
               L E+ +  + PN++ Y+ +I+G  K  +  EA  ++++M    + P+A  + IL
Sbjct: 397 VESLLQEMEEKHINPNVITYSSIINGYTKKGILDEAINVMKKMLDQNIIPNAYVYAIL 454



 Score =  167 bits (424), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 124/498 (24%), Positives = 234/498 (46%), Gaps = 10/498 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C +  +     L  +M+ +   PNV++Y+++I+GY + G +D A  V  +M    +
Sbjct: 385 IDGYCKVGDMERVESLLQEMEEKHINPNVITYSSIINGYTKKGILDEAINVMKKMLDQNI 444

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +PN+  Y++L+ G  +    E A      L+  MK    L VNN  F  LV++L R   +
Sbjct: 445 IPNAYVYAILIDGYCKAGKQEIAT----DLYNEMKLS-GLKVNNVLFDVLVNNLKRGKRM 499

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E   + +D+     + +      ++D   ++G+   A  +V  M ++ +   +V+YN +
Sbjct: 500 DEAEELLKDVTSRGLLLDHVNYTSLMDGFFKAGKESAALNMVEEMTEKSIPFDVVTYNVL 559

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++GL +HG    A  +    I+ G  P++ TY ++++  C + +L+ A ++   M S K 
Sbjct: 560 INGLLEHGK-YEAKSVYSGMIEMGLAPNQATYNIMIKAYCKQGELDNALELWNEMKSHKI 618

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           +  +  CN  +  L       + +NVL  M      P+++    ++N   K G+    L+
Sbjct: 619 MPSSITCNTLVVGLSEAGEIEKAMNVLNEMSVMGIHPNLVIHRVLLNASSKSGKANAVLQ 678

Query: 301 VLNDMV-AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           +   +V  G     +A     ++F  L   R+ +    + + M + G+    VTYNA++R
Sbjct: 679 MHEQLVDMGLKINQEAYNNLIVVFCRL---RMTKKATSVLKYMIRDGFVADTVTYNALIR 735

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
           G      V++A   +  ML  GV  +  TY +++ GL  +  + E    +D +       
Sbjct: 736 GYCESSHVKKALATYTQMLNEGVSPNIVTYNLLLGGLLGAGLMAERDELFDKMKENGLNP 795

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           D   Y  +I G  + G   E++    E+V  G  P    YNV+I    K+    +A ++L
Sbjct: 796 DASTYDTLISGYGKIGNKKESIRLYCEMVAQGFVPKTSTYNVLISDFAKVGKMDQARELL 855

Query: 480 REMRKNGLNPDAVTWRIL 497
            EM+  G+ P + T+ IL
Sbjct: 856 NEMQVRGVPPSSSTYDIL 873



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/224 (23%), Positives = 100/224 (44%), Gaps = 5/224 (2%)

Query: 277 PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALN 336
           P ++  N +I  F   G + +   +  +M+      P+  T   ++     +G +  AL+
Sbjct: 8   PTLLLWNQLIYHFNAFGLVSQVCDIYTEMLCSAV-PPNVYTHNVLVHAWCKMGNLILALD 66

Query: 337 LLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 396
           LL  V          VTYN V+ G  +   V +A    + M+      D+ T  I++ G 
Sbjct: 67  LLRNV----DVEVDTVTYNTVIWGFCQHGLVNQAFGFLSIMVKKDTCFDTITCNILVKGF 122

Query: 397 CESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNI 456
           C        +R  D++V      D   +  +I G C++G++  A+  +  +   G+  +I
Sbjct: 123 CRIGLAKYGERIMDNLVSGGTCKDVIGFNTLIDGYCKAGEMSLALDLVERMRKEGLLSDI 182

Query: 457 VCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKL 500
           V YN +I+G CK     +A  +L E+ ++    D+V + I D++
Sbjct: 183 VSYNTLINGFCKRGEYDKAKSLLHEISESRGVKDSVFFNIDDRI 226


>gi|449468277|ref|XP_004151848.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g14770, mitochondrial-like, partial [Cucumis
           sativus]
          Length = 697

 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 136/531 (25%), Positives = 238/531 (44%), Gaps = 45/531 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C L  +  A     +M+ +  VPNV++Y++LI+GY + G +  A+KV  +M H   
Sbjct: 136 IDGRCKLGDINGAESALHEMEEKDCVPNVITYSSLINGYVKQGLLHDAFKVLRKMVHKNA 195

Query: 61  LPNSLTYSVLVRGVLRT--RDVE------------RANVLMF-------KLWERMKEEED 99
           +PN  TY++L+ G  +   +D+             + NV +        K   RM+E E+
Sbjct: 196 MPNICTYAILLDGSFKAGWQDIALDLYSKMKQGGLKDNVFILDAFVNNMKRSGRMEEAEE 255

Query: 100 LSVNNAA---------FANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC 150
           L    A+         + NL+D   + G V+    +A++M     V +      +I+ L 
Sbjct: 256 LVAKMASGGLKPDLVNYTNLMDGFLKSGKVSSALNLAQEMTSKNVVFDIVTFNVLINCLF 315

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
           + G++   S +   MR+ GL+P L +YN++++G  K G    A +L  E      +P+  
Sbjct: 316 KLGKSDTES-IYSAMREMGLSPDLATYNTMLNGNFKKGNWTSALELWNEMKSRKLIPNAI 374

Query: 211 TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM 270
           T  +++ GLC    +E A  +L+ M+       +    I L      +    +L     +
Sbjct: 375 TCNIMINGLCEAGRMENAIDILKEMVLMGLYPTSTTYRILLNISSKSRRADTILQTHELL 434

Query: 271 LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR 330
           +  Q + D    N +I+  CK+G   +A  VL DM      A D  T+  +I G      
Sbjct: 435 VNMQLKVDKDVYNILISNLCKLGMTRKATAVLKDMEERGIIA-DTTTYNALIHGYCISSH 493

Query: 331 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYA 390
           ++ A  + Y  M     SP I TYN +L GL +   + EA ++ + +   G+V ++ TY 
Sbjct: 494 LKRAF-MTYSTMLSERVSPDIETYNLLLGGLSKAGLIHEADDLLSEIKKRGLVPNACTYE 552

Query: 391 IVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 450
            ++ G C+     E  R + ++V    I     Y  +I    + GK+ +A   + E+   
Sbjct: 553 TLMCGHCKVRNTKECLRIYCEMVIKGFIPKPRAYNMLIGYFSKMGKMKQAKELMNEMQTK 612

Query: 451 GVTPNIVCYNVVIDGAC------------KLSMKREAYQILREMRKNGLNP 489
           GV+P    Y+++I G C            K+S + EA ++  EM   G  P
Sbjct: 613 GVSPTCTTYDILICGWCNLLKMPDLGSTLKISYRAEAKRLFIEMNDRGFVP 663



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 133/497 (26%), Positives = 222/497 (44%), Gaps = 43/497 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D L    ++ EA  LF ++     VPN ++Y+ LI G C+ G+++ A     EM     
Sbjct: 101 IDGLFKSGQIKEAEYLFCNLYQLNLVPNYITYSALIDGRCKLGDINGAESALHEMEEKDC 160

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +PN +TYS L+ G ++   +  A    FK+  +M  +  +  N   +A L+D   + G+ 
Sbjct: 161 VPNVITYSSLINGYVKQGLLHDA----FKVLRKMVHKNAMP-NICTYAILLDGSFKAGWQ 215

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +    +   M QG   +  F     ++++ RSGR   A  +V  M   GL P LV+Y ++
Sbjct: 216 DIALDLYSKMKQGGLKDNVFILDAFVNNMKRSGRMEEAEELVAKMASGGLKPDLVNYTNL 275

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G  K G    A  L +E      +    T+ VL+  L              F L K D
Sbjct: 276 MDGFLKSGKVSSALNLAQEMTSKNVVFDIVTFNVLINCL--------------FKLGKSD 321

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
            +                      ++   M +    PD+ T NT++NG  K G    AL+
Sbjct: 322 TE----------------------SIYSAMREMGLSPDLATYNTMLNGNFKKGNWTSALE 359

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           + N+M + K   P+A+T   +I GL   GR++ A+++L + M   G  P   TY  +L  
Sbjct: 360 LWNEMKSRKLI-PNAITCNIMINGLCEAGRMENAIDILKE-MVLMGLYPTSTTYRILLNI 417

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
             + RR +   +    ++ + +  D   Y I+I  LC+     +A     D+     I D
Sbjct: 418 SSKSRRADTILQTHELLVNMQLKVDKDVYNILISNLCKLGMTRKATAVLKDMEERGIIAD 477

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              Y A+I G C S  +  A      ++   V+P+I  YN+++ G  K  +  EA  +L 
Sbjct: 478 TTTYNALIHGYCISSHLKRAFMTYSTMLSERVSPDIETYNLLLGGLSKAGLIHEADDLLS 537

Query: 481 EMRKNGLNPDAVTWRIL 497
           E++K GL P+A T+  L
Sbjct: 538 EIKKRGLVPNACTYETL 554



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 116/491 (23%), Positives = 234/491 (47%), Gaps = 10/491 (2%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           EA  L+ +M   G  P+VV++ ++++G C+ G++     +  EM   G+  N+++Y++L+
Sbjct: 7   EALTLYEEMVGSGIFPDVVTFGSILYGLCKHGKLSEGKLLLREMGKMGMNLNNVSYTILL 66

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP 131
             + +   V  A + +  +  R       + +  A   L+D L + G + E   +  ++ 
Sbjct: 67  DALFKAGKVAEALMTLACMIVRGN-----NFDVIACTVLIDGLFKSGQIKEAEYLFCNLY 121

Query: 132 QGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCM 191
           Q   V        +ID  C+ G  +GA   ++ M ++   P++++Y+S+++G  K G   
Sbjct: 122 QLNLVPNYITYSALIDGRCKLGDINGAESALHEMEEKDCVPNVITYSSLINGYVKQGLLH 181

Query: 192 RAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYL 251
            A+++L + +    +P+  TY +L++G       + A  +   M      D   I + ++
Sbjct: 182 DAFKVLRKMVHKNAMPNICTYAILLDGSFKAGWQDIALDLYSKMKQGGLKDNVFILDAFV 241

Query: 252 RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC 311
             +       E   ++  M     +PD++    +++GF K G++  AL +  +M + K  
Sbjct: 242 NNMKRSGRMEEAEELVAKMASGGLKPDLVNYTNLMDGFLKSGKVSSALNLAQEMTS-KNV 300

Query: 312 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK 371
             D VTF  +I  L  +G+       +Y  M + G SP + TYN +L G F+      A 
Sbjct: 301 VFDIVTFNVLINCLFKLGK--SDTESIYSAMREMGLSPDLATYNTMLNGNFKKGNWTSAL 358

Query: 372 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 431
           E++N M    ++ ++ T  I+I+GLCE+ +++ A     ++V       +  Y  ++   
Sbjct: 359 ELWNEMKSRKLIPNAITCNIMINGLCEAGRMENAIDILKEMVLMGLYPTSTTYRILLNIS 418

Query: 432 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 491
            +S +    +     LV+  +  +   YN++I   CKL M R+A  +L++M + G+  D 
Sbjct: 419 SKSRRADTILQTHELLVNMQLKVDKDVYNILISNLCKLGMTRKATAVLKDMEERGIIADT 478

Query: 492 VTWRILDKLHG 502
            T+  L  +HG
Sbjct: 479 TTYNAL--IHG 487



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 91/344 (26%), Positives = 166/344 (48%), Gaps = 7/344 (2%)

Query: 165 MRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESD 224
           M   G+ P +V++ SI++GLCKHG       LL E  + G   +  +Y +L++ L     
Sbjct: 15  MVGSGIFPDVVTFGSILYGLCKHGKLSEGKLLLREMGKMGMNLNNVSYTILLDALFKAGK 74

Query: 225 LEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNT 284
           + +A   L  M+ + +      C + +  L       E   +   + Q    P+ IT + 
Sbjct: 75  VAEALMTLACMIVRGNNFDVIACTVLIDGLFKSGQIKEAEYLFCNLYQLNLVPNYITYSA 134

Query: 285 VINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ 344
           +I+G CK+G I  A   L++M   K C P+ +T++++I G +  G + +A  +L + M  
Sbjct: 135 LIDGRCKLGDINGAESALHEM-EEKDCVPNVITYSSLINGYVKQGLLHDAFKVLRK-MVH 192

Query: 345 RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 404
           +   P I TY  +L G F+    + A ++++ M   G+  +       ++ +  S +++E
Sbjct: 193 KNAMPNICTYAILLDGSFKAGWQDIALDLYSKMKQGGLKDNVFILDAFVNNMKRSGRMEE 252

Query: 405 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
           A+     +       D   Y  ++ G  +SGK+  A++   E+    V  +IV +NV+I+
Sbjct: 253 AEELVAKMASGGLKPDLVNYTNLMDGFLKSGKVSSALNLAQEMTSKNVVFDIVTFNVLIN 312

Query: 465 GACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGN--RGN 506
              KL  K +   I   MR+ GL+PD  T+  +  L+GN  +GN
Sbjct: 313 CLFKLG-KSDTESIYSAMREMGLSPDLATYNTM--LNGNFKKGN 353



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 68/204 (33%), Positives = 115/204 (56%), Gaps = 4/204 (1%)

Query: 295 IEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTY 354
           +EEAL +  +MV G    PD VTF +I++GL   G++ E   LL + M + G +   V+Y
Sbjct: 5   LEEALTLYEEMV-GSGIFPDVVTFGSILYGLCKHGKLSEG-KLLLREMGKMGMNLNNVSY 62

Query: 355 NAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVW 414
             +L  LF+  +V EA     CM+  G   D     ++IDGL +S Q+ EA+  + ++ +
Sbjct: 63  TILLDALFKAGKVAEALMTLACMIVRGNNFDVIACTVLIDGLFKSGQIKEAEYLFCNL-Y 121

Query: 415 PSNIHDNYV-YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKR 473
             N+  NY+ Y+A+I G C+ G I+ A   L+E+ +    PN++ Y+ +I+G  K  +  
Sbjct: 122 QLNLVPNYITYSALIDGRCKLGDINGAESALHEMEEKDCVPNVITYSSLINGYVKQGLLH 181

Query: 474 EAYQILREMRKNGLNPDAVTWRIL 497
           +A+++LR+M      P+  T+ IL
Sbjct: 182 DAFKVLRKMVHKNAMPNICTYAIL 205



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 125/243 (51%), Gaps = 7/243 (2%)

Query: 262 ELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAP-DAVTFTT 320
           E L +   M+ +   PDV+T  +++ G CK G++ E   +L +M  GK     + V++T 
Sbjct: 7   EALTLYEEMVGSGIFPDVVTFGSILYGLCKHGKLSEGKLLLREM--GKMGMNLNNVSYTI 64

Query: 321 IIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI 380
           ++  L   G++ EAL  L   M  RG +  ++    ++ GLF+  +++EA+ +F  +  +
Sbjct: 65  LLDALFKAGKVAEALMTL-ACMIVRGNNFDVIACTVLIDGLFKSGQIKEAEYLFCNLYQL 123

Query: 381 GVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEA 440
            +V +  TY+ +IDG C+   ++ A+    ++     + +   Y+++I G  + G +H+A
Sbjct: 124 NLVPNYITYSALIDGRCKLGDINGAESALHEMEEKDCVPNVITYSSLINGYVKQGLLHDA 183

Query: 441 VHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKL 500
              L ++V     PNI  Y +++DG+ K   +  A  +  +M++ GL  +     ILD  
Sbjct: 184 FKVLRKMVHKNAMPNICTYAILLDGSFKAGWQDIALDLYSKMKQGGLKDNVF---ILDAF 240

Query: 501 HGN 503
             N
Sbjct: 241 VNN 243



 Score = 45.8 bits (107), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 46/98 (46%)

Query: 400 NQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCY 459
           N L+EA   ++++V      D   + +++ GLC+ GK+ E    L E+   G+  N V Y
Sbjct: 3   NGLEEALTLYEEMVGSGIFPDVVTFGSILYGLCKHGKLSEGKLLLREMGKMGMNLNNVSY 62

Query: 460 NVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            +++D   K     EA   L  M   G N D +   +L
Sbjct: 63  TILLDALFKAGKVAEALMTLACMIVRGNNFDVIACTVL 100


>gi|222613072|gb|EEE51204.1| hypothetical protein OsJ_32019 [Oryza sativa Japonica Group]
          Length = 615

 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 130/477 (27%), Positives = 222/477 (46%), Gaps = 17/477 (3%)

Query: 26  VPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANV 85
            P V +Y  LI   CR G +D+ +     +   G   +++T++ L++G+   +   R + 
Sbjct: 89  TPTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADK---RTSD 145

Query: 86  LMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQ---GKSVNEEFAC 142
            M  +  RM E   +  +  ++ NL+  LC E    E   +   M     G S  +  + 
Sbjct: 146 AMDIVLRRMTELGCIP-DVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSY 204

Query: 143 GHMIDSLCRSGRN--------HGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAY 194
             +++   + G            A  V+  M K G+ P  ++YNSI+HG C  G    A 
Sbjct: 205 NTVLNGFFKEGIQTKLTAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAI 264

Query: 195 QLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRAL 254
             L++    G  P+  TY  L+  LC      +ARK+   M  +            L+  
Sbjct: 265 GTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGH 324

Query: 255 CLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPD 314
           C      E   +   M++   +PD+IT NT+I+G C  G+++EA K+L  MV+     PD
Sbjct: 325 CKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGV-KPD 383

Query: 315 AVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVF 374
            VT+ T+I G   V R+ +AL  L++ M   G SP I+TYN +L+GLF  RR   AKE++
Sbjct: 384 IVTYGTLINGYCRVSRMDDAL-ALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELY 442

Query: 375 NCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRS 434
             +   G   + +TY I++ GLC++N  DEA R + ++       +   +  MI  L + 
Sbjct: 443 VSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKC 502

Query: 435 GKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 491
           G++ EA         +G+ P++  Y+++ +   +     E   +   M +NG + D+
Sbjct: 503 GRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADS 559



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 106/383 (27%), Positives = 189/383 (49%), Gaps = 19/383 (4%)

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQL-LEEGIQF 203
           +I   CR+GR       +  + K+G     +++  ++ GLC       A  + L    + 
Sbjct: 98  LIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDIVLRRMTEL 157

Query: 204 GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD-------VDRTRICNIYLRALCL 256
           G +P   +Y  L++GLC E+  ++A ++L  M   +        V    + N + +    
Sbjct: 158 GCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGIQ 217

Query: 257 IKNPTELLN----VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCA 312
            K   + ++    VL  M++    PD +T N++++G+C  G+ +EA+  L  M +     
Sbjct: 218 TKLTAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGV-E 276

Query: 313 PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKE 372
           P+ VT+++++  L   GR  EA  + +  M +RG  P I TY  +L+G  +  RV E+++
Sbjct: 277 PNVVTYSSLMNYLCKNGRSTEARKI-FDSMTKRGLEPDIATYRTLLQGHCKEGRVIESEK 335

Query: 373 VFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLC 432
           +F+ M+ IGV  D  TY  +IDG C + ++DEA +    +V      D   Y  +I G C
Sbjct: 336 LFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYC 395

Query: 433 RSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAV 492
           R  ++ +A+    E+V SGV+PNI+ YN+++ G         A ++   + K+G   +  
Sbjct: 396 RVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELS 455

Query: 493 TWRILDKLHG---NRGNDFGLRI 512
           T+ I+  LHG   N   D  LR+
Sbjct: 456 TYNII--LHGLCKNNLTDEALRM 476



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 104/421 (24%), Positives = 193/421 (45%), Gaps = 28/421 (6%)

Query: 4   LCGLSRVGEAHKLFF---DMKSRGHVPNVVSYTTLIHGYCRTG--------EMDVAYKVF 52
           LC  +R  EA +L     D +  G  P+VVSY T+++G+ + G         MD A +V 
Sbjct: 173 LCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGIQTKLTAQAMDKAMEVL 232

Query: 53  DEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVD 112
           + M   GV+P+ +TY+ ++ G   +   + A   + K+       + +  N   +++L++
Sbjct: 233 NTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKM-----RSDGVEPNVVTYSSLMN 287

Query: 113 SLCREGYVNEVFRIAEDMPQGKSVNEEFACGH-MIDSLCRSGRNHGASRVVYVMRKRGLT 171
            LC+ G   E  +I + M + + +  + A    ++   C+ GR   + ++  +M + G+ 
Sbjct: 288 YLCKNGRSTEARKIFDSMTK-RGLEPDIATYRTLLQGHCKEGRVIESEKLFDLMVRIGVK 346

Query: 172 PSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKV 231
           P +++YN+++ G C  G    A +LL   +  G  P   TY  L+ G C  S ++ A  +
Sbjct: 347 PDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALAL 406

Query: 232 LQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK 291
            + M+S          NI L+ L   +       + V + ++  Q ++ T N +++G CK
Sbjct: 407 FKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCK 466

Query: 292 MGRIEEALKVLNDMVAGKFCAPD----AVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGY 347
               +EAL++  ++     C  D      TF  +I  LL  GR+ EA +L +      G 
Sbjct: 467 NNLTDEALRMFQNL-----CLTDLQLETRTFNIMIGALLKCGRMDEAKDL-FAAHSANGL 520

Query: 348 SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKR 407
            P + TY+ +   L     +EE  ++F  M   G  ADS     ++  L +   +  A  
Sbjct: 521 VPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKLLQRGDITRAGT 580

Query: 408 F 408
           +
Sbjct: 581 Y 581



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 86/337 (25%), Positives = 145/337 (43%), Gaps = 6/337 (1%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C   +  EA      M+S G  PNVV+Y++L++  C+ G    A K+FD M   G+ P+ 
Sbjct: 255 CSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDI 314

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
            TY  L++G  +   V  +  L F L  R+  + D+   N     L+D  C  G ++E  
Sbjct: 315 ATYRTLLQGHCKEGRVIESEKL-FDLMVRIGVKPDIITYN----TLIDGCCLAGKMDEAT 369

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
           ++   M       +    G +I+  CR  R   A  +   M   G++P++++YN I+ GL
Sbjct: 370 KLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGL 429

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
                   A +L     + G      TY +++ GLC  +  ++A ++ Q +        T
Sbjct: 430 FHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLET 489

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
           R  NI + AL       E  ++          PDV T + +     + G +EE   +   
Sbjct: 490 RTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLS 549

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQV 341
           M     C+ D+    +I+  LL  G I  A   L+ +
Sbjct: 550 MEENG-CSADSRMLNSIVRKLLQRGDITRAGTYLFMI 585



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 107/239 (44%), Gaps = 6/239 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C   ++ EA KL   M S G  P++V+Y TLI+GYCR   MD A  +F EM   GV
Sbjct: 356 IDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGV 415

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +TY+++++G+  TR    A  L   + +   + E LS  N     ++  LC+    
Sbjct: 416 SPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLE-LSTYNI----ILHGLCKNNLT 470

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E  R+ +++       E      MI +L + GR   A  +       GL P + +Y+ +
Sbjct: 471 DEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLM 530

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
              L + G       L     + G          +V  L    D+ +A   L FM+ +K
Sbjct: 531 AENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKLLQRGDITRAGTYL-FMIDEK 588


>gi|147768815|emb|CAN62672.1| hypothetical protein VITISV_031896 [Vitis vinifera]
          Length = 530

 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 108/390 (27%), Positives = 193/390 (49%), Gaps = 2/390 (0%)

Query: 107 FANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMR 166
           F  L+ S+ +  + + V  ++  M       + +    +I+S C   R   A  V+  + 
Sbjct: 115 FTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILINSFCHLRRLGYAFSVLAKLL 174

Query: 167 KRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLE 226
           K G  P   ++N+++ GLC  G    A  L ++ I  G+ P   TY  L+ GLC   +  
Sbjct: 175 KLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGEGFQPDVVTYGTLMNGLCKVGNTS 234

Query: 227 KARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVI 286
            A ++L+ M+ K         N  + +LC  +  TE  N+   M+     PD+ T N++I
Sbjct: 235 AAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFTYNSLI 294

Query: 287 NGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
           +  C +   +    +LN+MV  K   P+ V F+T++  L   G I  A +++  +M +RG
Sbjct: 295 HALCNLCEWKHVTTLLNEMVNSKI-MPNVVVFSTVVDALCKEGMIAIAHDVV-DMMIKRG 352

Query: 347 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
             P +VTY A++ G      ++EA +VF+ M+  G V +  +Y I+I+G C+  ++D+A 
Sbjct: 353 VEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAM 412

Query: 407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466
              + +     I D   Y  +I GLC  G++  A+   +E+V SG  P++V Y +++D  
Sbjct: 413 GLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYL 472

Query: 467 CKLSMKREAYQILREMRKNGLNPDAVTWRI 496
           CK     EA  +L+ +  + L+ D + + I
Sbjct: 473 CKNHHLAEAMVLLKAIEGSNLDADILVYNI 502



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 105/393 (26%), Positives = 187/393 (47%), Gaps = 7/393 (1%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M S G  P+V +   LI+ +C    +  A+ V  ++   G  P++ T++ L+RG+     
Sbjct: 138 MDSFGIPPDVYTLNILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGK 197

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
           +  A      L+++    E    +   +  L++ LC+ G  +   R+   M Q       
Sbjct: 198 IGEA----LHLFDK-TIGEGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNV 252

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
            A   +IDSLC+  +   A  +   M  +G++P + +YNS++H LC          LL E
Sbjct: 253 IAYNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNE 312

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
            +    +P+   +  +V+ LC E  +  A  V+  M+ +            +   CL   
Sbjct: 313 MVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSE 372

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
             E + V   M+   C P+V + N +ING+C++ R+++A+ +L  M      A D VT+ 
Sbjct: 373 MDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIA-DTVTYN 431

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
           T+I GL +VGR+Q A+ L ++ M   G  P +VTY  +L  L +   + EA  +   + G
Sbjct: 432 TLIHGLCHVGRLQHAIALFHE-MVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEG 490

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI 412
             + AD   Y I IDG+C + +L+ A+  + ++
Sbjct: 491 SNLDADILVYNIAIDGMCRAGELEAARDLFSNL 523



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 101/376 (26%), Positives = 186/376 (49%), Gaps = 9/376 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C L R+G A  +   +   G  P+  ++ TLI G C  G++  A  +FD+    G 
Sbjct: 154 INSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGEGF 213

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TY  L+ G+ +  +   A  L+     R   +++   N  A+  ++DSLC++  V
Sbjct: 214 QPDVVTYGTLMNGLCKVGNTSAAIRLL-----RSMVQKNCRPNVIAYNTIIDSLCKDRQV 268

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E F +  +M       + F    +I +LC        + ++  M    + P++V ++++
Sbjct: 269 TEAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTV 328

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           V  LCK G    A+ +++  I+ G  P   TY  L++G C  S++++A KV   M+ K  
Sbjct: 329 VDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGC 388

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           V   R  NI +   C I+   + + +L  M       D +T NT+I+G C +GR++ A+ 
Sbjct: 389 VPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIA 448

Query: 301 VLNDMVA-GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           + ++MVA G+   PD VT+  ++  L     + EA+ LL + +        I+ YN  + 
Sbjct: 449 LFHEMVASGQI--PDLVTYRILLDYLCKNHHLAEAMVLL-KAIEGSNLDADILVYNIAID 505

Query: 360 GLFRLRRVEEAKEVFN 375
           G+ R   +E A+++F+
Sbjct: 506 GMCRAGELEAARDLFS 521



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 94/331 (28%), Positives = 154/331 (46%), Gaps = 4/331 (1%)

Query: 172 PSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKV 231
           PS V +  ++  + K         L  +   FG  P  +T  +L+   C    L  A  V
Sbjct: 110 PSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILINSFCHLRRLGYAFSV 169

Query: 232 LQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK 291
           L  +L           N  +R LC+     E L++    +    QPDV+T  T++NG CK
Sbjct: 170 LAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGEGFQPDVVTYGTLMNGLCK 229

Query: 292 MGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGI 351
           +G    A+++L  MV  K C P+ + + TII  L    ++ EA NL  + M  +G SP I
Sbjct: 230 VGNTSAAIRLLRSMVQ-KNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSE-MITKGISPDI 287

Query: 352 VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDD 411
            TYN+++  L  L   +    + N M+   ++ +   ++ V+D LC+   +  A    D 
Sbjct: 288 FTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDM 347

Query: 412 IVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSM 471
           ++      D   Y A++ G C   ++ EAV     +V  G  PN+  YN++I+G C++  
Sbjct: 348 MIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQR 407

Query: 472 KREAYQILREMRKNGLNPDAVTWRILDKLHG 502
             +A  +L +M   GL  D VT+  L  +HG
Sbjct: 408 MDKAMGLLEQMSLQGLIADTVTYNTL--IHG 436



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 81/276 (29%), Positives = 137/276 (49%), Gaps = 6/276 (2%)

Query: 222 ESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVIT 281
           +  L    ++L        VD T++    L ++  +K+ + +L++   M      PDV T
Sbjct: 94  DDALSSFNRMLHMHPPPSTVDFTKL----LTSIAKMKHYSTVLSLSTQMDSFGIPPDVYT 149

Query: 282 LNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQV 341
           LN +IN FC + R+  A  VL  ++    C PD  TF T+I GL   G+I EAL+L  + 
Sbjct: 150 LNILINSFCHLRRLGYAFSVLAKLLKLG-CQPDNTTFNTLIRGLCVEGKIGEALHLFDKT 208

Query: 342 MPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ 401
           + + G+ P +VTY  ++ GL ++     A  +   M+      +   Y  +ID LC+  Q
Sbjct: 209 IGE-GFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQ 267

Query: 402 LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNV 461
           + EA   + +++      D + Y ++I  LC   +       L E+V+S + PN+V ++ 
Sbjct: 268 VTEAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFST 327

Query: 462 VIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           V+D  CK  M   A+ ++  M K G+ PD VT+  L
Sbjct: 328 VVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTAL 363



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 74/312 (23%), Positives = 139/312 (44%), Gaps = 5/312 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M+ LC +     A +L   M  +   PNV++Y T+I   C+  ++  A+ +F EM   G+
Sbjct: 224 MNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGI 283

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+  TY+ L+  +    + +    L+ ++         +  N   F+ +VD+LC+EG +
Sbjct: 284 SPDIFTYNSLIHALCNLCEWKHVTTLLNEMVN-----SKIMPNVVVFSTVVDALCKEGMI 338

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                + + M +     +      ++D  C       A +V   M  +G  P++ SYN +
Sbjct: 339 AIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNIL 398

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++G C+     +A  LLE+    G +    TY  L+ GLC    L+ A  +   M++   
Sbjct: 399 INGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQ 458

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           +       I L  LC   +  E + +L  +  +    D++  N  I+G C+ G +E A  
Sbjct: 459 IPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARD 518

Query: 301 VLNDMVAGKFCA 312
           + +++    F A
Sbjct: 519 LFSNLSCQGFAA 530



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 94/203 (46%), Gaps = 2/203 (0%)

Query: 295 IEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTY 354
           +++AL   N M+      P  V FT ++  +  +      L+L  Q M   G  P + T 
Sbjct: 93  LDDALSSFNRMLH-MHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQ-MDSFGIPPDVYTL 150

Query: 355 NAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVW 414
           N ++     LRR+  A  V   +L +G   D+TT+  +I GLC   ++ EA   +D  + 
Sbjct: 151 NILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIG 210

Query: 415 PSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKRE 474
                D   Y  ++ GLC+ G    A+  L  +V     PN++ YN +ID  CK     E
Sbjct: 211 EGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTE 270

Query: 475 AYQILREMRKNGLNPDAVTWRIL 497
           A+ +  EM   G++PD  T+  L
Sbjct: 271 AFNLFSEMITKGISPDIFTYNSL 293


>gi|357121285|ref|XP_003562351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 624

 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 131/520 (25%), Positives = 242/520 (46%), Gaps = 26/520 (5%)

Query: 3   QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
            LC   R  +A +    + + G+   VV Y  ++ GYCR G+++ A ++   +    V P
Sbjct: 61  SLCVAGRTADAVRA---LDAAGNAAGVVDYNAMVAGYCRVGQVEAARRLAAAVP---VPP 114

Query: 63  NSLTYSVLVRGVL-RTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVN 121
           N+ TY  +VRG+  R R  +   VL     + M     + +    +  +++S CR G  +
Sbjct: 115 NAYTYFPVVRGLCGRGRIADALAVL-----DEMTSRSCVPI-PPMYHVIIESACRSGGYS 168

Query: 122 EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
              R+ E +    S  +   C  +I+++C  G       ++  +   G    +VSYN+++
Sbjct: 169 SALRVLEALHAKGSTLDTGNCNLVINAICDQGCVDEGLEMLRKLPLFGCEADIVSYNAVL 228

Query: 182 HGLC--KHGG--------CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKV 231
            GLC  K  G         ++ ++ L +  Q G  P    Y  +++G+C E   E A ++
Sbjct: 229 KGLCAAKRWGDVEELMDEMVKVHEALSQMAQHGCTPDIRMYATIIDGICKEGHHEVANEI 288

Query: 232 LQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK 291
           L  M S          N  L+ +C      +   +L  M Q  C  D +T N +++ FC+
Sbjct: 289 LSRMPSYGLKPNVVCYNTVLKGICSADRWEKAEELLTEMYQKNCPLDDVTFNILVDFFCQ 348

Query: 292 MGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGI 351
            G ++  +++L  M+    C PD +T+TT+I G    G I EA+ LL   MP  G  P  
Sbjct: 349 NGLVDRVIELLEQMLE-HGCMPDVITYTTVINGFCKEGLIDEAVMLLKN-MPSCGCKPNT 406

Query: 352 VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDD 411
           ++Y  VL+GL    R  +A+E+ + M+  G + +  T+  +I+ LC+   +++A      
Sbjct: 407 ISYTIVLKGLCSTERWVDAEELMSRMIQQGCLPNPVTFNTIINFLCKKGLVEQAIELLKQ 466

Query: 412 IVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSM 471
           ++      D   Y+ +I GL ++GK  EA+  L  +++ G+TPN++ Y+ +     +   
Sbjct: 467 MLVNGCNPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNVITYSSMAFALAREGR 526

Query: 472 KREAYQILREMRKNGLNPDAVTWR-ILDKLHGNRGNDFGL 510
             +  Q+   ++   +  DAV +  ++  L   R  D  +
Sbjct: 527 IDKVIQMFDNIQDATIRSDAVLYNAVISSLCKRRETDLAI 566



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 107/408 (26%), Positives = 179/408 (43%), Gaps = 16/408 (3%)

Query: 107 FANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMR 166
            + L+ SLC  G   +  R  +       V +  A   M+   CR G+   A R+   + 
Sbjct: 55  LSALIRSLCVAGRTADAVRALDAAGNAAGVVDYNA---MVAGYCRVGQVEAARRLAAAVP 111

Query: 167 KRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLE 226
              + P+  +Y  +V GLC  G    A  +L+E      +P    Y V++E  C      
Sbjct: 112 ---VPPNAYTYFPVVRGLCGRGRIADALAVLDEMTSRSCVPIPPMYHVIIESACRSGGYS 168

Query: 227 KARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVI 286
            A +VL+ + +K     T  CN+ + A+C      E L +L  +    C+ D+++ N V+
Sbjct: 169 SALRVLEALHAKGSTLDTGNCNLVINAICDQGCVDEGLEMLRKLPLFGCEADIVSYNAVL 228

Query: 287 NGFCKMGRIEEALKVLNDMV---------AGKFCAPDAVTFTTIIFGLLNVGRIQEALNL 337
            G C   R  +  +++++MV         A   C PD   + TII G+   G   E  N 
Sbjct: 229 KGLCAAKRWGDVEELMDEMVKVHEALSQMAQHGCTPDIRMYATIIDGICKEGH-HEVANE 287

Query: 338 LYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLC 397
           +   MP  G  P +V YN VL+G+    R E+A+E+   M       D  T+ I++D  C
Sbjct: 288 ILSRMPSYGLKPNVVCYNTVLKGICSADRWEKAEELLTEMYQKNCPLDDVTFNILVDFFC 347

Query: 398 ESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIV 457
           ++  +D      + ++    + D   Y  +I G C+ G I EAV  L  +   G  PN +
Sbjct: 348 QNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKNMPSCGCKPNTI 407

Query: 458 CYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
            Y +V+ G C      +A +++  M + G  P+ VT+  +      +G
Sbjct: 408 SYTIVLKGLCSTERWVDAEELMSRMIQQGCLPNPVTFNTIINFLCKKG 455



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 101/401 (25%), Positives = 188/401 (46%), Gaps = 42/401 (10%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           + H+    M   G  P++  Y T+I G C+ G  +VA ++   M   G+ PN + Y+ ++
Sbjct: 249 KVHEALSQMAQHGCTPDIRMYATIIDGICKEGHHEVANEILSRMPSYGLKPNVVCYNTVL 308

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP 131
           +G+      E+A  L+ +++++     +  +++  F  LVD  C+ G V+ V  + E M 
Sbjct: 309 KGICSADRWEKAEELLTEMYQK-----NCPLDDVTFNILVDFFCQNGLVDRVIELLEQML 363

Query: 132 QGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCM 191
           +   + +      +I+  C+ G    A  ++  M   G  P+ +SY  ++ GLC     +
Sbjct: 364 EHGCMPDVITYTTVINGFCKEGLIDEAVMLLKNMPSCGCKPNTISYTIVLKGLCSTERWV 423

Query: 192 RAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYL 251
            A +L+   IQ G LP+  T+  ++  LC +  +E+A ++L+ ML               
Sbjct: 424 DAEELMSRMIQQGCLPNPVTFNTIINFLCKKGLVEQAIELLKQMLVNG------------ 471

Query: 252 RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC 311
                                  C PD+I+ +TVI+G  K G+ EEAL++LN M+  K  
Sbjct: 472 -----------------------CNPDLISYSTVIDGLGKAGKTEEALELLNVMI-NKGI 507

Query: 312 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK 371
            P+ +T++++ F L   GRI + + +   +      S  ++ YNAV+  L + R  + A 
Sbjct: 508 TPNVITYSSMAFALAREGRIDKVIQMFDNIQDATIRSDAVL-YNAVISSLCKRRETDLAI 566

Query: 372 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI 412
           +    M+  G + + +TY  +I GL     L EA+    ++
Sbjct: 567 DFLAYMVSNGCMPNESTYTALIKGLASEGLLCEAQDLLSEL 607



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 69/278 (24%), Positives = 129/278 (46%), Gaps = 40/278 (14%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C    V    +L   M   G +P+V++YTT+I+G+C+ G +D A  +   M  CG 
Sbjct: 343 VDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKNMPSCGC 402

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN+++Y+++++G+  T     A  LM     RM ++  L  N   F  +++ LC++G V
Sbjct: 403 KPNTISYTIVLKGLCSTERWVDAEELM----SRMIQQGCLP-NPVTFNTIINFLCKKGLV 457

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY--- 177
            +   + + M       +  +   +ID L ++G+   A  ++ VM  +G+TP++++Y   
Sbjct: 458 EQAIELLKQMLVNGCNPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNVITYSSM 517

Query: 178 --------------------------------NSIVHGLCKHGGCMRAYQLLEEGIQFGY 205
                                           N+++  LCK      A   L   +  G 
Sbjct: 518 AFALAREGRIDKVIQMFDNIQDATIRSDAVLYNAVISSLCKRRETDLAIDFLAYMVSNGC 577

Query: 206 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           +P+E TY  L++GL  E  L +A+ +L  + S++ V +
Sbjct: 578 MPNESTYTALIKGLASEGLLCEAQDLLSELCSRRAVRK 615


>gi|356551942|ref|XP_003544331.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 545

 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 123/485 (25%), Positives = 227/485 (46%), Gaps = 7/485 (1%)

Query: 3   QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
            L  + R   A  L+  M+     P+  +   +I+ +C  G++ +A+    ++   G  P
Sbjct: 67  SLVNVKRYPTAISLYKQMELSEVEPDYFTLNIIINCFCHFGQVVLAFSGVSKILKLGYQP 126

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           N++T + L++G+     V+ A     +  +++  +    ++  ++  L++ +C+ G    
Sbjct: 127 NTITLNTLMKGLCLEGKVKEA----LRFHDKVLAQ-GFRLSGISYGILINGVCKIGETRA 181

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
             R+   + +            +ID LC+      A  +   M  +G++P +V+Y+ +V 
Sbjct: 182 AIRLLRRIERWSIRPNVVIYSMIIDRLCKDTLVDEAYDLYTEMVGKGISPDVVTYSILVS 241

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           G C  G   RA  LL E +     P  +TY +LV+ LC E  +++A  VL  M+      
Sbjct: 242 GFCIVGQLNRAIDLLNEMVLENINPDIYTYTILVDALCKEGKVKEAENVLAVMVKACVNL 301

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
              + +  +   CL+        V   M Q    PDV   + +ING CK+ R++EAL + 
Sbjct: 302 DVVVYSTLMDGYCLVNEVNNAKRVFYTMTQMGVTPDVHCYSIMINGLCKIKRVDEALNLF 361

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
            + +  K   PD VT+T++I  L   GRI    +L +  M  RG  P ++TYN ++  L 
Sbjct: 362 EE-IHQKNMVPDTVTYTSLIDCLCKSGRISYVWDL-FDEMLDRGQPPDVITYNNLIDALC 419

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
           +   ++ A  +FN M    +  +  T+ I++DGLC+  +L  A  F+ D++      +  
Sbjct: 420 KNGHLDRAIALFNKMKDQAIRPNVYTFTILLDGLCKVGRLKNALEFFQDLLTKGYCLNVR 479

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
            Y  MI GLC+ G + EA+     + D+G   + V + ++I          +A +++REM
Sbjct: 480 TYTVMINGLCKEGLLDEALALQSRMEDNGCISDAVTFEIMIRAFFDKDENDKAEKLVREM 539

Query: 483 RKNGL 487
              GL
Sbjct: 540 IARGL 544



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 99/358 (27%), Positives = 182/358 (50%), Gaps = 2/358 (0%)

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
           F    +I+  C  G+   A   V  + K G  P+ ++ N+++ GLC  G    A +  ++
Sbjct: 94  FTLNIIINCFCHFGQVVLAFSGVSKILKLGYQPNTITLNTLMKGLCLEGKVKEALRFHDK 153

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
            +  G+  S  +Y +L+ G+C   +   A ++L+ +          I ++ +  LC    
Sbjct: 154 VLAQGFRLSGISYGILINGVCKIGETRAAIRLLRRIERWSIRPNVVIYSMIIDRLCKDTL 213

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
             E  ++   M+     PDV+T + +++GFC +G++  A+ +LN+MV      PD  T+T
Sbjct: 214 VDEAYDLYTEMVGKGISPDVVTYSILVSGFCIVGQLNRAIDLLNEMVLENI-NPDIYTYT 272

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
            ++  L   G+++EA N+L  VM +   +  +V Y+ ++ G   +  V  AK VF  M  
Sbjct: 273 ILVDALCKEGKVKEAENVL-AVMVKACVNLDVVVYSTLMDGYCLVNEVNNAKRVFYTMTQ 331

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
           +GV  D   Y+I+I+GLC+  ++DEA   +++I   + + D   Y ++I  LC+SG+I  
Sbjct: 332 MGVTPDVHCYSIMINGLCKIKRVDEALNLFEEIHQKNMVPDTVTYTSLIDCLCKSGRISY 391

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
                 E++D G  P+++ YN +ID  CK      A  +  +M+   + P+  T+ IL
Sbjct: 392 VWDLFDEMLDRGQPPDVITYNNLIDALCKNGHLDRAIALFNKMKDQAIRPNVYTFTIL 449



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 102/413 (24%), Positives = 199/413 (48%), Gaps = 7/413 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M  LC   +V EA +    + ++G   + +SY  LI+G C+ GE   A ++   +    +
Sbjct: 135 MKGLCLEGKVKEALRFHDKVLAQGFRLSGISYGILINGVCKIGETRAAIRLLRRIERWSI 194

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN + YS+++  + +   V+ A    + L+  M   + +S +   ++ LV   C  G +
Sbjct: 195 RPNVVIYSMIIDRLCKDTLVDEA----YDLYTEMV-GKGISPDVVTYSILVSGFCIVGQL 249

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           N    +  +M       + +    ++D+LC+ G+   A  V+ VM K  +   +V Y+++
Sbjct: 250 NRAIDLLNEMVLENINPDIYTYTILVDALCKEGKVKEAENVLAVMVKACVNLDVVVYSTL 309

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G C       A ++     Q G  P  H Y +++ GLC    +++A  + + +  K  
Sbjct: 310 MDGYCLVNEVNNAKRVFYTMTQMGVTPDVHCYSIMINGLCKIKRVDEALNLFEEIHQKNM 369

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           V  T      +  LC     + + ++   ML     PDVIT N +I+  CK G ++ A+ 
Sbjct: 370 VPDTVTYTSLIDCLCKSGRISYVWDLFDEMLDRGQPPDVITYNNLIDALCKNGHLDRAIA 429

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           + N M   +   P+  TFT ++ GL  VGR++ AL   +Q +  +GY   + TY  ++ G
Sbjct: 430 LFNKM-KDQAIRPNVYTFTILLDGLCKVGRLKNALE-FFQDLLTKGYCLNVRTYTVMING 487

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413
           L +   ++EA  + + M   G ++D+ T+ I+I    + ++ D+A++   +++
Sbjct: 488 LCKEGLLDEALALQSRMEDNGCISDAVTFEIMIRAFFDKDENDKAEKLVREMI 540



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 80/170 (47%), Gaps = 5/170 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   R+     LF +M  RG  P+V++Y  LI   C+ G +D A  +F++M+   +
Sbjct: 380 IDCLCKSGRISYVWDLFDEMLDRGQPPDVITYNNLIDALCKNGHLDRAIALFNKMKDQAI 439

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN  T+++L+ G+ +   ++ A      L  +        +N   +  +++ LC+EG +
Sbjct: 440 RPNVYTFTILLDGLCKVGRLKNALEFFQDLLTK-----GYCLNVRTYTVMINGLCKEGLL 494

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGL 170
           +E   +   M     +++      MI +      N  A ++V  M  RGL
Sbjct: 495 DEALALQSRMEDNGCISDAVTFEIMIRAFFDKDENDKAEKLVREMIARGL 544


>gi|356503775|ref|XP_003520679.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Glycine max]
          Length = 777

 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 142/547 (25%), Positives = 232/547 (42%), Gaps = 71/547 (12%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCR---------------------- 41
           LC + R+ +A KLF +M  R  VPN V+Y TLI GYC+                      
Sbjct: 202 LCKVRRIKDARKLFDEMIQRNMVPNTVTYNTLIDGYCKVGGIEEALGFKERMKEQNVECN 261

Query: 42  -------------TGEMDVAYKVFDEMRHCGVLPNSL----------------------- 65
                        +G +D A +V  EM   G LP                          
Sbjct: 262 LVTYNSLLNGLCGSGRVDDAREVLLEMEGSGFLPGGFLSFVFDDHSNGAGDDGLFDGKEI 321

Query: 66  -----TYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
                TY +L+ G+ R   +E+A  ++ KL E       +S N      LV++ C+EG V
Sbjct: 322 RIDERTYCILLNGLCRVGRIEKAEEVLAKLVENGVTPSKISYNI-----LVNAYCQEGDV 376

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +     E M +            +I   C +G    A   V  M ++G++P++ +YNS+
Sbjct: 377 KKAILTTEQMEERGLEPNRITFNTVISKFCETGEVDHAETWVRRMVEKGVSPTVETYNSL 436

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++G  + G  +R ++ L+E  + G  P+  +Y  L+  LC +  L  A  VL  M+ +  
Sbjct: 437 INGYGQKGHFVRCFEFLDEMDKAGIKPNVISYGSLINCLCKDRKLIDAEIVLADMIGRGV 496

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                I N+ + A C +    +       M+Q+     ++T NT+ING  + GR+++A  
Sbjct: 497 SPNAEIYNMLIEASCSLSKLKDAFRFFDEMIQSGIDATLVTYNTLINGLGRNGRVKKAED 556

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +   M AGK C PD +T+ ++I G       Q+ L  LY  M   G  P + T++ ++  
Sbjct: 557 LFLQM-AGKGCNPDVITYNSLISGYAKSVNTQKCLE-LYDKMKILGIKPTVGTFHPLIYA 614

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
             R   V    ++F  ML + +V D   Y  +I    E   + +A      +V      D
Sbjct: 615 C-RKEGVVTMDKMFQEMLQMDLVPDQFVYNEMIYSYAEDGNVMKAMSLHQQMVDQGVDCD 673

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              Y ++I    R  ++ E  H + ++   G+ P +  YN++I G C L     AY   R
Sbjct: 674 KVTYNSLILAYLRDRRVSEIKHLVDDMKAKGLVPKVDTYNILIKGLCDLKDFNGAYFWYR 733

Query: 481 EMRKNGL 487
           EM + GL
Sbjct: 734 EMVERGL 740



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 132/526 (25%), Positives = 247/526 (46%), Gaps = 42/526 (7%)

Query: 4   LCGLSR-VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           LC +S+ + EA  L+  M+  G VP+  S   L+     +   +    VF ++   G  P
Sbjct: 96  LCSVSKMLDEATDLYSTMRKDGFVPSTRSVNRLLRTLVDSRHFEKTLAVFADVIDSGTRP 155

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFA-NLV-DSLCREGYV 120
           +++ Y   V+  +  +D+++     F+L + M ++    +  + FA NLV   LC+   +
Sbjct: 156 DAVAYGKAVQAAVMLKDLDKG----FELMKSMVKD---GMGPSVFAYNLVLGGLCKVRRI 208

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +  ++ ++M Q   V        +ID  C+ G    A      M+++ +  +LV+YNS+
Sbjct: 209 KDARKLFDEMIQRNMVPNTVTYNTLIDGYCKVGGIEEALGFKERMKEQNVECNLVTYNSL 268

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLP----------------------------SEHTY 212
           ++GLC  G    A ++L E    G+LP                             E TY
Sbjct: 269 LNGLCGSGRVDDAREVLLEMEGSGFLPGGFLSFVFDDHSNGAGDDGLFDGKEIRIDERTY 328

Query: 213 KVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC-NIYLRALCLIKNPTELLNVLVFML 271
            +L+ GLC    +EKA +VL   L +  V  ++I  NI + A C   +  + +     M 
Sbjct: 329 CILLNGLCRVGRIEKAEEVLA-KLVENGVTPSKISYNILVNAYCQEGDVKKAILTTEQME 387

Query: 272 QTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRI 331
           +   +P+ IT NTVI+ FC+ G ++ A   +  MV  K  +P   T+ ++I G    G  
Sbjct: 388 ERGLEPNRITFNTVISKFCETGEVDHAETWVRRMVE-KGVSPTVETYNSLINGYGQKGHF 446

Query: 332 QEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAI 391
                 L + M + G  P +++Y +++  L + R++ +A+ V   M+G GV  ++  Y +
Sbjct: 447 VRCFEFLDE-MDKAGIKPNVISYGSLINCLCKDRKLIDAEIVLADMIGRGVSPNAEIYNM 505

Query: 392 VIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 451
           +I+  C  ++L +A RF+D+++          Y  +I GL R+G++ +A     ++   G
Sbjct: 506 LIEASCSLSKLKDAFRFFDEMIQSGIDATLVTYNTLINGLGRNGRVKKAEDLFLQMAGKG 565

Query: 452 VTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
             P+++ YN +I G  K    ++  ++  +M+  G+ P   T+  L
Sbjct: 566 CNPDVITYNSLISGYAKSVNTQKCLELYDKMKILGIKPTVGTFHPL 611



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 137/556 (24%), Positives = 246/556 (44%), Gaps = 71/556 (12%)

Query: 7   LSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLT 66
           L  + +  +L   M   G  P+V +Y  ++ G C+   +  A K+FDEM    ++PN++T
Sbjct: 170 LKDLDKGFELMKSMVKDGMGPSVFAYNLVLGGLCKVRRIKDARKLFDEMIQRNMVPNTVT 229

Query: 67  YSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRI 126
           Y+ L+ G  +   +E A  L FK  ERMKE+ ++  N   + +L++ LC  G V++   +
Sbjct: 230 YNTLIDGYCKVGGIEEA--LGFK--ERMKEQ-NVECNLVTYNSLLNGLCGSGRVDDAREV 284

Query: 127 AEDMP---------------------------QGKSV--NEEFACGHMIDSLCRSGRNHG 157
             +M                             GK +  +E   C  +++ LCR GR   
Sbjct: 285 LLEMEGSGFLPGGFLSFVFDDHSNGAGDDGLFDGKEIRIDERTYC-ILLNGLCRVGRIEK 343

Query: 158 ASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVE 217
           A  V+  + + G+TPS +SYN +V+  C+ G   +A    E+  + G  P+  T+  ++ 
Sbjct: 344 AEEVLAKLVENGVTPSKISYNILVNAYCQEGDVKKAILTTEQMEERGLEPNRITFNTVIS 403

Query: 218 GLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQP 277
             C   +++ A   ++ M+ K         N  +       +       L  M +   +P
Sbjct: 404 KFCETGEVDHAETWVRRMVEKGVSPTVETYNSLINGYGQKGHFVRCFEFLDEMDKAGIKP 463

Query: 278 DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNL 337
           +VI+  ++IN  CK  ++ +A  VL DM+ G+  +P+A  +  +I    ++ ++++A   
Sbjct: 464 NVISYGSLINCLCKDRKLIDAEIVLADMI-GRGVSPNAEIYNMLIEASCSLSKLKDAFRF 522

Query: 338 LYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLC 397
            +  M Q G    +VTYN ++ GL R  RV++A+++F  M G G   D  TY  +I G  
Sbjct: 523 -FDEMIQSGIDATLVTYNTLINGLGRNGRVKKAEDLFLQMAGKGCNPDVITYNSLISGYA 581

Query: 398 ESNQLDEAKRFWDDI----VWPSN------------------------------IHDNYV 423
           +S    +    +D +    + P+                               + D +V
Sbjct: 582 KSVNTQKCLELYDKMKILGIKPTVGTFHPLIYACRKEGVVTMDKMFQEMLQMDLVPDQFV 641

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y  MI      G + +A+    ++VD GV  + V YN +I    +     E   ++ +M+
Sbjct: 642 YNEMIYSYAEDGNVMKAMSLHQQMVDQGVDCDKVTYNSLILAYLRDRRVSEIKHLVDDMK 701

Query: 484 KNGLNPDAVTWRILDK 499
             GL P   T+ IL K
Sbjct: 702 AKGLVPKVDTYNILIK 717



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 154/335 (45%), Gaps = 38/335 (11%)

Query: 204 GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTEL 263
           G++PS  +   L+  L      EK   V   ++              ++A  ++K+  + 
Sbjct: 117 GFVPSTRSVNRLLRTLVDSRHFEKTLAVFADVIDSGTRPDAVAYGKAVQAAVMLKDLDKG 176

Query: 264 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF 323
             ++  M++    P V   N V+ G CK+ RI++A K+ ++M+  +   P+ VT+ T+I 
Sbjct: 177 FELMKSMVKDGMGPSVFAYNLVLGGLCKVRRIKDARKLFDEMIQ-RNMVPNTVTYNTLID 235

Query: 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 383
           G   VG I+EAL    + M ++     +VTYN++L GL    RV++A+EV   M G G +
Sbjct: 236 GYCKVGGIEEALGF-KERMKEQNVECNLVTYNSLLNGLCGSGRVDDAREVLLEMEGSGFL 294

Query: 384 A----------------------------DSTTYAIVIDGLCESNQLDEAK----RFWDD 411
                                        D  TY I+++GLC   ++++A+    +  ++
Sbjct: 295 PGGFLSFVFDDHSNGAGDDGLFDGKEIRIDERTYCILLNGLCRVGRIEKAEEVLAKLVEN 354

Query: 412 IVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSM 471
            V PS I     Y  ++   C+ G + +A+    ++ + G+ PN + +N VI   C+   
Sbjct: 355 GVTPSKIS----YNILVNAYCQEGDVKKAILTTEQMEERGLEPNRITFNTVISKFCETGE 410

Query: 472 KREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
              A   +R M + G++P   T+  L   +G +G+
Sbjct: 411 VDHAETWVRRMVEKGVSPTVETYNSLINGYGQKGH 445



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/287 (23%), Positives = 131/287 (45%), Gaps = 14/287 (4%)

Query: 225 LEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNT 284
           L+K +K L+ ++S+    RT     +LR+L L K     L+ L   +      D +    
Sbjct: 42  LQKVQK-LETLISR---GRTITARRFLRSLLLTKTAFSSLSELHAHVSKPFFSDNLLW-- 95

Query: 285 VINGFCKMGR-IEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMP 343
                C + + ++EA  + + M    F  P   +   ++  L++    ++ L +   V+ 
Sbjct: 96  ----LCSVSKMLDEATDLYSTMRKDGF-VPSTRSVNRLLRTLVDSRHFEKTLAVFADVID 150

Query: 344 QRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLD 403
             G  P  V Y   ++    L+ +++  E+   M+  G+      Y +V+ GLC+  ++ 
Sbjct: 151 S-GTRPDAVAYGKAVQAAVMLKDLDKGFELMKSMVKDGMGPSVFAYNLVLGGLCKVRRIK 209

Query: 404 EAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463
           +A++ +D+++  + + +   Y  +I G C+ G I EA+ F   + +  V  N+V YN ++
Sbjct: 210 DARKLFDEMIQRNMVPNTVTYNTLIDGYCKVGGIEEALGFKERMKEQNVECNLVTYNSLL 269

Query: 464 DGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGNDFGL 510
           +G C      +A ++L EM  +G  P      + D  H N   D GL
Sbjct: 270 NGLCGSGRVDDAREVLLEMEGSGFLPGGFLSFVFDD-HSNGAGDDGL 315



 Score = 42.7 bits (99), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 1/63 (1%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN-SLTY 67
           RV E   L  DMK++G VP V +Y  LI G C   + + AY  + EM   G+L N S+ Y
Sbjct: 689 RVSEIKHLVDDMKAKGLVPKVDTYNILIKGLCDLKDFNGAYFWYREMVERGLLLNVSMCY 748

Query: 68  SVL 70
            ++
Sbjct: 749 QLI 751


>gi|297850744|ref|XP_002893253.1| hypothetical protein ARALYDRAFT_313173 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297339095|gb|EFH69512.1| hypothetical protein ARALYDRAFT_313173 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1147

 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 119/492 (24%), Positives = 232/492 (47%), Gaps = 45/492 (9%)

Query: 10  VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSV 69
           + +A +++  M   G +P V+++ T++    + G+++   K++ EM+   +  + +TY++
Sbjct: 255 MNKAQEVYETMVMHGIMPTVITFNTMLDSCFKAGDLERVDKIWLEMKRRNIEFSEVTYNI 314

Query: 70  LVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAED 129
           L+ G  ++  +E A      +     +     V   +F  L++  C++G  +E + + ++
Sbjct: 315 LINGFSKSGKMEEARRFHGDM-----QRSGFPVTPYSFNPLIEGYCKQGLFDEAWGVTDE 369

Query: 130 MPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG 189
           M               I +LC  GR   A  ++  M      P +VSYN+++HG  K   
Sbjct: 370 MLNAGIYPTTSTYNIYIRALCEFGRIDDARELLSSM----AAPDVVSYNTLMHGYIKMRK 425

Query: 190 CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNI 249
            + A  L ++       PS  TY  L++GLC   +LE A+++ + M S+           
Sbjct: 426 FVEASLLFDDLKAGNINPSIVTYNTLIDGLCESGNLEGAQRLKEEMTSQ----------- 474

Query: 250 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK 309
                            L++       PDVIT  T++ GF K G +  A ++ ++M+  K
Sbjct: 475 -----------------LIY-------PDVITYTTLLKGFVKNGNLSMATEIYDEMLR-K 509

Query: 310 FCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEE 369
              PD   +TT   G L +G  ++A  L  +++ +  ++P +  YN  + GL ++  +E+
Sbjct: 510 GIKPDGYAYTTRTVGELRLGDSEKAFRLHEEMVAEDHHAPDLTIYNVRIDGLCKVGNLEK 569

Query: 370 AKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIK 429
           A E    +  +G+V D  TY  VI G  E  +   A+  +D+++          Y  +I 
Sbjct: 570 AIEFQRKIFRVGLVPDHVTYTTVIRGYLEKGRFKMARDLYDEMLSKRLSPSVITYFVLIH 629

Query: 430 GLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNP 489
           G  ++G++ +A  +  E+   GV PN++ +N ++ G CK     EAY+ L +M + G++P
Sbjct: 630 GHAKAGRLEQAFQYSTEMKKRGVRPNVMTHNALLHGMCKAGNIDEAYRYLCKMEEEGISP 689

Query: 490 DAVTWRILDKLH 501
           +  ++ IL   H
Sbjct: 690 NKYSYTILISKH 701



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 118/489 (24%), Positives = 220/489 (44%), Gaps = 53/489 (10%)

Query: 17  FFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLR 76
           F  M  +G +P+V +   ++     +  M+ A +V++ M   G++P  +T++ ++    +
Sbjct: 227 FEKMIRKGFLPSVRNCNIVLRVLRDSRMMNKAQEVYETMVMHGIMPTVITFNTMLDSCFK 286

Query: 77  TRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSV 136
             D+ER +    K+W  MK        N  F+ +  ++                      
Sbjct: 287 AGDLERVD----KIWLEMKRR------NIEFSEVTYNI---------------------- 314

Query: 137 NEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQL 196
                   +I+   +SG+   A R    M++ G   +  S+N ++ G CK G    A+ +
Sbjct: 315 --------LINGFSKSGKMEEARRFHGDMQRSGFPVTPYSFNPLIEGYCKQGLFDEAWGV 366

Query: 197 LEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCL 256
            +E +  G  P+  TY + +  LC    ++ AR++L  M +   V    + + Y++    
Sbjct: 367 TDEMLNAGIYPTTSTYNIYIRALCEFGRIDDARELLSSMAAPDVVSYNTLMHGYIKMRKF 426

Query: 257 IKNPTELLNVLVF--MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPD 314
           ++        L+F  +      P ++T NT+I+G C+ G +E A ++  +M + +   PD
Sbjct: 427 VEAS------LLFDDLKAGNINPSIVTYNTLIDGLCESGNLEGAQRLKEEMTS-QLIYPD 479

Query: 315 AVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVF 374
            +T+TT++ G +  G +  A  + Y  M ++G  P    Y     G  RL   E+A  + 
Sbjct: 480 VITYTTLLKGFVKNGNLSMATEI-YDEMLRKGIKPDGYAYTTRTVGELRLGDSEKAFRLH 538

Query: 375 NCMLGIGVVA-DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR 433
             M+     A D T Y + IDGLC+   L++A  F   I     + D+  Y  +I+G   
Sbjct: 539 EEMVAEDHHAPDLTIYNVRIDGLCKVGNLEKAIEFQRKIFRVGLVPDHVTYTTVIRGYLE 598

Query: 434 SGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVT 493
            G+   A     E++   ++P+++ Y V+I G  K     +A+Q   EM+K G+ P+ +T
Sbjct: 599 KGRFKMARDLYDEMLSKRLSPSVITYFVLIHGHAKAGRLEQAFQYSTEMKKRGVRPNVMT 658

Query: 494 WRILDKLHG 502
              L  LHG
Sbjct: 659 HNAL--LHG 665



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 111/453 (24%), Positives = 211/453 (46%), Gaps = 22/453 (4%)

Query: 6   GLSRVG---EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           G S+ G   EA +   DM+  G      S+  LI GYC+ G  D A+ V DEM + G+ P
Sbjct: 318 GFSKSGKMEEARRFHGDMQRSGFPVTPYSFNPLIEGYCKQGLFDEAWGVTDEMLNAGIYP 377

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
            + TY++ +R +     ++ A  L+  +          + +  ++  L+    +     E
Sbjct: 378 TTSTYNIYIRALCEFGRIDDARELLSSM---------AAPDVVSYNTLMHGYIKMRKFVE 428

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
              + +D+  G           +ID LC SG   GA R+   M  + + P +++Y +++ 
Sbjct: 429 ASLLFDDLKAGNINPSIVTYNTLIDGLCESGNLEGAQRLKEEMTSQLIYPDVITYTTLLK 488

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD-V 241
           G  K+G    A ++ +E ++ G  P  + Y     G     D EKA ++ + M+++    
Sbjct: 489 GFVKNGNLSMATEIYDEMLRKGIKPDGYAYTTRTVGELRLGDSEKAFRLHEEMVAEDHHA 548

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
               I N+ +  LC + N  + +     + +    PD +T  TVI G+ + GR + A  +
Sbjct: 549 PDLTIYNVRIDGLCKVGNLEKAIEFQRKIFRVGLVPDHVTYTTVIRGYLEKGRFKMARDL 608

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
            ++M++ +  +P  +T+  +I G    GR+++A     + M +RG  P ++T+NA+L G+
Sbjct: 609 YDEMLSKRL-SPSVITYFVLIHGHAKAGRLEQAFQYSTE-MKKRGVRPNVMTHNALLHGM 666

Query: 362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
            +   ++EA      M   G+  +  +Y I+I   C+ ++ +E  + + +++      D 
Sbjct: 667 CKAGNIDEAYRYLCKMEEEGISPNKYSYTILISKHCDLDKWEEVVKLYKEMLDKEIEPDG 726

Query: 422 YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTP 454
           Y + A+ K L    K HE++     L  SG  P
Sbjct: 727 YTHRALFKHL---EKDHESM----ALDSSGKQP 752



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/281 (25%), Positives = 132/281 (46%), Gaps = 4/281 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    +  A +L  +M S+   P+V++YTTL+ G+ + G + +A +++DEM   G+
Sbjct: 452 IDGLCESGNLEGAQRLKEEMTSQLIYPDVITYTTLLKGFVKNGNLSMATEIYDEMLRKGI 511

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+   Y+    G LR  D E+A    F+L E M  E+  + +   +   +D LC+ G +
Sbjct: 512 KPDGYAYTTRTVGELRLGDSEKA----FRLHEEMVAEDHHAPDLTIYNVRIDGLCKVGNL 567

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +       + +   V +      +I      GR   A  +   M  + L+PS+++Y  +
Sbjct: 568 EKAIEFQRKIFRVGLVPDHVTYTTVIRGYLEKGRFKMARDLYDEMLSKRLSPSVITYFVL 627

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +HG  K G   +A+Q   E  + G  P+  T+  L+ G+C   ++++A + L  M  +  
Sbjct: 628 IHGHAKAGRLEQAFQYSTEMKKRGVRPNVMTHNALLHGMCKAGNIDEAYRYLCKMEEEGI 687

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVIT 281
                   I +   C +    E++ +   ML  + +PD  T
Sbjct: 688 SPNKYSYTILISKHCDLDKWEEVVKLYKEMLDKEIEPDGYT 728



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 77/281 (27%), Positives = 126/281 (44%), Gaps = 6/281 (2%)

Query: 226 EKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTV 285
           EK     + M+ K  +   R CNI LR L   +   +   V   M+     P VIT NT+
Sbjct: 221 EKCLLSFEKMIRKGFLPSVRNCNIVLRVLRDSRMMNKAQEVYETMVMHGIMPTVITFNTM 280

Query: 286 INGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQR 345
           ++   K G +E   K+  +M   +      VT+  +I G    G+++EA    +  M + 
Sbjct: 281 LDSCFKAGDLERVDKIWLEM-KRRNIEFSEVTYNILINGFSKSGKMEEARRF-HGDMQRS 338

Query: 346 GYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA 405
           G+     ++N ++ G  +    +EA  V + ML  G+   ++TY I I  LCE  ++D+A
Sbjct: 339 GFPVTPYSFNPLIEGYCKQGLFDEAWGVTDEMLNAGIYPTTSTYNIYIRALCEFGRIDDA 398

Query: 406 KRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDG 465
           +     +  P    D   Y  ++ G  +  K  EA     +L    + P+IV YN +IDG
Sbjct: 399 RELLSSMAAP----DVVSYNTLMHGYIKMRKFVEASLLFDDLKAGNINPSIVTYNTLIDG 454

Query: 466 ACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
            C+      A ++  EM    + PD +T+  L K     GN
Sbjct: 455 LCESGNLEGAQRLKEEMTSQLIYPDVITYTTLLKGFVKNGN 495



 Score = 39.3 bits (90), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 33/69 (47%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           +C    + EA++    M+  G  PN  SYT LI  +C   + +   K++ EM    + P+
Sbjct: 666 MCKAGNIDEAYRYLCKMEEEGISPNKYSYTILISKHCDLDKWEEVVKLYKEMLDKEIEPD 725

Query: 64  SLTYSVLVR 72
             T+  L +
Sbjct: 726 GYTHRALFK 734


>gi|255553139|ref|XP_002517612.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543244|gb|EEF44776.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 794

 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 124/462 (26%), Positives = 214/462 (46%), Gaps = 7/462 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   +V +  KL      RG +PN+V Y TLI GYC+ G+ + A  +F E++  G LP 
Sbjct: 182 LCKEGKVEDGWKLIEKRWGRGCMPNIVFYNTLIDGYCKKGDTERANVLFKELKMKGFLPT 241

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             TY  ++ G  +    E  + L+ ++ ER      L V+   + N++D+  + G   E 
Sbjct: 242 VKTYGAIINGFCKKGKFEVVDKLLVEMSER-----GLDVSIHIYNNIIDAQFKHGCRIEA 296

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
                 M +     +      +I   C  G  H A +++    KRGL P+ VSY  ++H 
Sbjct: 297 ADTVGWMIKSGCDPDMATYNILITGSCSCGEVHKAEQLLEQAIKRGLLPNKVSYTPLIHN 356

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK G  +RA  LL +  + G+ P   TY  L+ GL    +++ A  V   M+ K  +  
Sbjct: 357 YCKQGEYLRALDLLIKMSERGHKPDLVTYAALIHGLIVAGEVDVALTVRNKMVEKGVLPD 416

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
             I N+ +  LC          +L  ML     PD     T+++GF + G  EEA K+  
Sbjct: 417 ANIYNVLMSGLCKKGRLPAAKVLLAEMLDQNVAPDAFITATLVDGFIRHGDFEEAKKLF- 475

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           ++   K   P  V +  +I G    G +++AL L ++ M Q  +SP   TY+ ++ G  +
Sbjct: 476 ELTIEKGIDPGVVGYNAMIKGYCKFGMMKDAL-LCFKRMIQGLHSPDEFTYSTIIDGYIK 534

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
           +  +  A  +F  M+      +  TY ++I+G C S  ++ A++ +  ++      +   
Sbjct: 535 MNDLHGALRMFGLMVKGACKPNVVTYTLLINGFCLSGDINRAEKTFKQMLSLRLKPNVVT 594

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDG 465
           Y  +I   C+   + +A  F  +++     PN V YN +++G
Sbjct: 595 YTILIGCFCKGVNLTKACSFFEQMLMEKCLPNDVTYNYLMNG 636



 Score =  175 bits (443), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 111/406 (27%), Positives = 200/406 (49%), Gaps = 19/406 (4%)

Query: 109 NLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKR 168
           +L++ L + G V    ++ ++M       + +    M+  LC+ G+     +++     R
Sbjct: 142 SLLNVLVKHGKVEIACKVYDEMVDRNGEVDNYTVCIMVKGLCKEGKVEDGWKLIEKRWGR 201

Query: 169 GLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKA 228
           G  P++V YN+++ G CK G   RA  L +E    G+LP+  TY  ++ G C +   E  
Sbjct: 202 GCMPNIVFYNTLIDGYCKKGDTERANVLFKELKMKGFLPTVKTYGAIINGFCKKGKFEVV 261

Query: 229 RKVLQFMLSKKDVDRT-----RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLN 283
            K+L  M S++ +D +      I +   +  C I    E  + + +M+++ C PD+ T N
Sbjct: 262 DKLLVEM-SERGLDVSIHIYNNIIDAQFKHGCRI----EAADTVGWMIKSGCDPDMATYN 316

Query: 284 TVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMP 343
            +I G C  G + +A ++L   +  +   P+ V++T +I      G    AL+LL + M 
Sbjct: 317 ILITGSCSCGEVHKAEQLLEQAIK-RGLLPNKVSYTPLIHNYCKQGEYLRALDLLIK-MS 374

Query: 344 QRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLD 403
           +RG+ P +VTY A++ GL     V+ A  V N M+  GV+ D+  Y +++ GLC+  +L 
Sbjct: 375 ERGHKPDLVTYAALIHGLIVAGEVDVALTVRNKMVEKGVLPDANIYNVLMSGLCKKGRLP 434

Query: 404 EAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463
            AK    +++  +   D ++ A ++ G  R G   EA       ++ G+ P +V YN +I
Sbjct: 435 AAKVLLAEMLDQNVAPDAFITATLVDGFIRHGDFEEAKKLFELTIEKGIDPGVVGYNAMI 494

Query: 464 DGACKLSMKREAYQILREMRKNGLNPDAVTWRI-------LDKLHG 502
            G CK  M ++A    + M +   +PD  T+         ++ LHG
Sbjct: 495 KGYCKFGMMKDALLCFKRMIQGLHSPDEFTYSTIIDGYIKMNDLHG 540



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 126/495 (25%), Positives = 230/495 (46%), Gaps = 12/495 (2%)

Query: 5   CGL-SRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           CGL  R  E ++ F  +K    VP+V S  +L++   + G++++A KV+DEM       +
Sbjct: 114 CGLVDRALEFYRTF--IKIHHCVPDVFSCNSLLNVLVKHGKVEIACKVYDEMVDRNGEVD 171

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFAN-LVDSLCREGYVNE 122
           + T  ++V+G+ +   VE    L+ K W R        + N  F N L+D  C++G    
Sbjct: 172 NYTVCIMVKGLCKEGKVEDGWKLIEKRWGRG------CMPNIVFYNTLIDGYCKKGDTER 225

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
              + +++     +      G +I+  C+ G+     +++  M +RGL  S+  YN+I+ 
Sbjct: 226 ANVLFKELKMKGFLPTVKTYGAIINGFCKKGKFEVVDKLLVEMSERGLDVSIHIYNNIID 285

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
              KHG  + A   +   I+ G  P   TY +L+ G C   ++ KA ++L+  + +  + 
Sbjct: 286 AQFKHGCRIEAADTVGWMIKSGCDPDMATYNILITGSCSCGEVHKAEQLLEQAIKRGLLP 345

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
                   +   C        L++L+ M +   +PD++T   +I+G    G ++ AL V 
Sbjct: 346 NKVSYTPLIHNYCKQGEYLRALDLLIKMSERGHKPDLVTYAALIHGLIVAGEVDVALTVR 405

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
           N MV  K   PDA  +  ++ GL   GR+  A  LL +++ Q   +P       ++ G  
Sbjct: 406 NKMVE-KGVLPDANIYNVLMSGLCKKGRLPAAKVLLAEMLDQN-VAPDAFITATLVDGFI 463

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
           R    EEAK++F   +  G+      Y  +I G C+   + +A   +  ++   +  D +
Sbjct: 464 RHGDFEEAKKLFELTIEKGIDPGVVGYNAMIKGYCKFGMMKDALLCFKRMIQGLHSPDEF 523

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
            Y+ +I G  +   +H A+     +V     PN+V Y ++I+G C       A +  ++M
Sbjct: 524 TYSTIIDGYIKMNDLHGALRMFGLMVKGACKPNVVTYTLLINGFCLSGDINRAEKTFKQM 583

Query: 483 RKNGLNPDAVTWRIL 497
               L P+ VT+ IL
Sbjct: 584 LSLRLKPNVVTYTIL 598



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 119/515 (23%), Positives = 231/515 (44%), Gaps = 23/515 (4%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C       A+ LF ++K +G +P V +Y  +I+G+C+ G+ +V  K+  EM   G+
Sbjct: 214 IDGYCKKGDTERANVLFKELKMKGFLPTVKTYGAIINGFCKKGKFEVVDKLLVEMSERGL 273

Query: 61  LPNSLTYSVLVRGVLRTR-DVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGY 119
             +   Y+ ++    +    +E A+ + + +      +     + A +  L+   C  G 
Sbjct: 274 DVSIHIYNNIIDAQFKHGCRIEAADTVGWMI------KSGCDPDMATYNILITGSCSCGE 327

Query: 120 VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           V++  ++ E   +   +  + +   +I + C+ G    A  ++  M +RG  P LV+Y +
Sbjct: 328 VHKAEQLLEQAIKRGLLPNKVSYTPLIHNYCKQGEYLRALDLLIKMSERGHKPDLVTYAA 387

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++HGL   G    A  +  + ++ G LP  + Y VL+ GLC +  L  A+ +L  ML + 
Sbjct: 388 LIHGLIVAGEVDVALTVRNKMVEKGVLPDANIYNVLMSGLCKKGRLPAAKVLLAEMLDQN 447

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                 I    +       +  E   +    ++    P V+  N +I G+CK G +++AL
Sbjct: 448 VAPDAFITATLVDGFIRHGDFEEAKKLFELTIEKGIDPGVVGYNAMIKGYCKFGMMKDAL 507

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
                M+ G   +PD  T++TII G + +  +  AL  ++ +M +    P +VTY  ++ 
Sbjct: 508 LCFKRMIQG-LHSPDEFTYSTIIDGYIKMNDLHGALR-MFGLMVKGACKPNVVTYTLLIN 565

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
           G      +  A++ F  ML + +  +  TY I+I   C+   L +A  F++ ++    + 
Sbjct: 566 GFCLSGDINRAEKTFKQMLSLRLKPNVVTYTILIGCFCKGVNLTKACSFFEQMLMEKCLP 625

Query: 420 DNYVYAAMIKGLC----------RSGKIHEA--VHFLYELVDSGVTPNIVCYNVVIDGAC 467
           ++  Y  ++ GL           RS +   +  +     ++  G       YN ++   C
Sbjct: 626 NDVTYNYLMNGLTNNVDFVISNQRSEQTENSLVLESFGMMISDGWDRRAASYNSILICLC 685

Query: 468 KLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
           +  M + A  +  +M   G  PD V+   L  LHG
Sbjct: 686 QHKMVKHALHLRDKMMSKGFLPDPVSLVAL--LHG 718



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 110/444 (24%), Positives = 192/444 (43%), Gaps = 54/444 (12%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C    V +A +L      RG +PN VSYT LIH YC+ GE   A  +  +M   G  P+ 
Sbjct: 323 CSCGEVHKAEQLLEQAIKRGLLPNKVSYTPLIHNYCKQGEYLRALDLLIKMSERGHKPDL 382

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           +TY+ L+ G++   +V+ A  +  K+ E+     D ++ N     L+  LC++G +    
Sbjct: 383 VTYAALIHGLIVAGEVDVALTVRNKMVEK-GVLPDANIYNV----LMSGLCKKGRLPAAK 437

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
            +  +M       + F    ++D   R G    A ++  +  ++G+ P +V YN+++ G 
Sbjct: 438 VLLAEMLDQNVAPDAFITATLVDGFIRHGDFEEAKKLFELTIEKGIDPGVVGYNAMIKGY 497

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
           CK G    A    +  IQ  + P E TY  +++G    +DL  A                
Sbjct: 498 CKFGMMKDALLCFKRMIQGLHSPDEFTYSTIIDGYIKMNDLHGA---------------- 541

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
                              L +   M++  C+P+V+T   +INGFC  G I  A K    
Sbjct: 542 -------------------LRMFGLMVKGACKPNVVTYTLLINGFCLSGDINRAEKTFKQ 582

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL--- 361
           M++ +   P+ VT+T +I        + +A +   Q++ ++   P  VTYN ++ GL   
Sbjct: 583 MLSLRL-KPNVVTYTILIGCFCKGVNLTKACSFFEQMLMEKCL-PNDVTYNYLMNGLTNN 640

Query: 362 ----FRLRRVEEAK-----EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI 412
                  +R E+ +     E F  M+  G    + +Y  ++  LC+   +  A    D +
Sbjct: 641 VDFVISNQRSEQTENSLVLESFGMMISDGWDRRAASYNSILICLCQHKMVKHALHLRDKM 700

Query: 413 VWPSNIHDNYVYAAMIKGLCRSGK 436
           +    + D     A++ GLC  G+
Sbjct: 701 MSKGFLPDPVSLVALLHGLCLEGR 724



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 87/378 (23%), Positives = 163/378 (43%), Gaps = 5/378 (1%)

Query: 122 EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
           E F  A       +   EF+C  ++  L R         ++ +M+ + L P+  +++ ++
Sbjct: 49  EFFHWASKQSNCGNYLNEFSCSSLLRLLARRRLFSEVESLLKIMKSKDLMPTREAFSLVI 108

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGY-LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK- 239
                 G   RA +     I+  + +P   +   L+  L     +E A KV   M+ +  
Sbjct: 109 SVFADCGLVDRALEFYRTFIKIHHCVPDVFSCNSLLNVLVKHGKVEIACKVYDEMVDRNG 168

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
           +VD   +C I ++ LC      +   ++       C P+++  NT+I+G+CK G  E A 
Sbjct: 169 EVDNYTVC-IMVKGLCKEGKVEDGWKLIEKRWGRGCMPNIVFYNTLIDGYCKKGDTERAN 227

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
            +  ++    F  P   T+  II G    G+ +    LL + M +RG    I  YN ++ 
Sbjct: 228 VLFKELKMKGF-LPTVKTYGAIINGFCKKGKFEVVDKLLVE-MSERGLDVSIHIYNNIID 285

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
             F+     EA +    M+  G   D  TY I+I G C   ++ +A++  +  +    + 
Sbjct: 286 AQFKHGCRIEAADTVGWMIKSGCDPDMATYNILITGSCSCGEVHKAEQLLEQAIKRGLLP 345

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           +   Y  +I   C+ G+   A+  L ++ + G  P++V Y  +I G         A  + 
Sbjct: 346 NKVSYTPLIHNYCKQGEYLRALDLLIKMSERGHKPDLVTYAALIHGLIVAGEVDVALTVR 405

Query: 480 REMRKNGLNPDAVTWRIL 497
            +M + G+ PDA  + +L
Sbjct: 406 NKMVEKGVLPDANIYNVL 423



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 57/249 (22%), Positives = 107/249 (42%), Gaps = 17/249 (6%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C    + +A   F  M    H P+  +Y+T+I GY +  ++  A ++F  M      PN 
Sbjct: 498 CKFGMMKDALLCFKRMIQGLHSPDEFTYSTIIDGYIKMNDLHGALRMFGLMVKGACKPNV 557

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           +TY++L+ G   + D+ RA     K +++M     L  N   +  L+   C+   + +  
Sbjct: 558 VTYTLLINGFCLSGDINRAE----KTFKQMLSLR-LKPNVVTYTILIGCFCKGVNLTKAC 612

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCR------SGRNHGASRVVYVMRKRGLTPS----- 173
              E M   K +  +    ++++ L        S +    +    V+   G+  S     
Sbjct: 613 SFFEQMLMEKCLPNDVTYNYLMNGLTNNVDFVISNQRSEQTENSLVLESFGMMISDGWDR 672

Query: 174 -LVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVL 232
              SYNSI+  LC+H     A  L ++ +  G+LP   +   L+ GLC E   +    V+
Sbjct: 673 RAASYNSILICLCQHKMVKHALHLRDKMMSKGFLPDPVSLVALLHGLCLEGRSQDWNNVI 732

Query: 233 QFMLSKKDV 241
              L+++++
Sbjct: 733 SCKLNEREL 741


>gi|356523854|ref|XP_003530549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g16890, mitochondrial-like [Glycine max]
          Length = 678

 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 127/495 (25%), Positives = 228/495 (46%), Gaps = 49/495 (9%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           +C +  V EA +L   MK +GH PNV +YT LI G+C    +D A+ VF+ M+  GV PN
Sbjct: 224 VCKVGVVDEALRLVRQMKDKGHFPNVFTYTMLIEGFCIASRVDEAFGVFETMKDSGVYPN 283

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEED----LSVNNAAFANLVDSLCREG- 118
             T   LV GV R  D  +A  L+ +  +R +E+E     L+ +   +    +S+ +E  
Sbjct: 284 EATVRALVHGVFRCVDPSKALELLSEFLDREQEQERVHFMLACDTVLYCLANNSMAKEMV 343

Query: 119 -YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
            ++  V       P     N   AC      L +         V  ++RK+G+   + +Y
Sbjct: 344 VFLRRVLGRGGYFPGNSVFNVVMAC------LVKGAELRETCDVFEILRKQGVKAGIGAY 397

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
            +++  L K+       ++  + I  G + +  +Y +++   C    ++ A +  + M  
Sbjct: 398 LALIEVLYKNEWREEGDRVYGQLISDGLISNVFSYNMIINCFCRAKLMDNASEAFRDMQV 457

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
           +  V                                   P+++T NT+ING CK G I++
Sbjct: 458 RGVV-----------------------------------PNLVTFNTLINGHCKDGAIDK 482

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           A K+L  ++      PD  TF++I+ GL  + R +EAL    + M + G +P  V YN +
Sbjct: 483 ARKLLESLLENGL-KPDIFTFSSIVDGLCQIKRTEEALECFTE-MIEWGINPNAVIYNIL 540

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 417
           +R L  +  V  + ++   M   G+  D+ +Y  +I   C  N++++AK+ +D +     
Sbjct: 541 IRSLCTIGDVARSVKLLRRMQKEGISPDTYSYNALIQIFCRMNKVEKAKKLFDSMSRSGL 600

Query: 418 IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQ 477
             DNY Y+A I+ L  SG++ EA    Y +  +G +P+    N++I    +     EA  
Sbjct: 601 NPDNYTYSAFIEALSESGRLEEAKKMFYSMEANGCSPDSYICNLIIKILVQQEYVEEAQN 660

Query: 478 ILREMRKNGLNPDAV 492
           I+   R+ G++ +++
Sbjct: 661 IIERCRQKGISLNSI 675



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 113/510 (22%), Positives = 218/510 (42%), Gaps = 53/510 (10%)

Query: 34  TLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWER 93
            L+  + R G  + +  VF ++   G+ P +  Y+ L+  ++++  ++    L +  +++
Sbjct: 149 ALLASWGRLGLANYSAHVFCQISFLGLSPTTRLYNALIDALVKSNSID----LAYLKFQQ 204

Query: 94  MKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSG 153
           M  + +   +   +  L+  +C+ G V+E  R+   M         F    +I+  C + 
Sbjct: 205 MAAD-NCVADRFTYNTLIHGVCKVGVVDEALRLVRQMKDKGHFPNVFTYTMLIEGFCIAS 263

Query: 154 RNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLL---------EEGIQF- 203
           R   A  V   M+  G+ P+  +  ++VHG+ +     +A +LL         +E + F 
Sbjct: 264 RVDEAFGVFETMKDSGVYPNEATVRALVHGVFRCVDPSKALELLSEFLDREQEQERVHFM 323

Query: 204 ------------------------------GYLPSEHTYKVLVEGLCGESDLEKARKVLQ 233
                                         GY P    + V++  L   ++L +   V +
Sbjct: 324 LACDTVLYCLANNSMAKEMVVFLRRVLGRGGYFPGNSVFNVVMACLVKGAELRETCDVFE 383

Query: 234 FMLSKKDVDRTRICNIYLRAL-CLIKNPTELLNVLVF--MLQTQCQPDVITLNTVINGFC 290
            +L K+ V        YL  +  L KN        V+  ++      +V + N +IN FC
Sbjct: 384 -ILRKQGVKAG--IGAYLALIEVLYKNEWREEGDRVYGQLISDGLISNVFSYNMIINCFC 440

Query: 291 KMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG 350
           +   ++ A +   DM   +   P+ VTF T+I G    G I +A  LL  ++ + G  P 
Sbjct: 441 RAKLMDNASEAFRDMQV-RGVVPNLVTFNTLINGHCKDGAIDKARKLLESLL-ENGLKPD 498

Query: 351 IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD 410
           I T+++++ GL +++R EEA E F  M+  G+  ++  Y I+I  LC    +  + +   
Sbjct: 499 IFTFSSIVDGLCQIKRTEEALECFTEMIEWGINPNAVIYNILIRSLCTIGDVARSVKLLR 558

Query: 411 DIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLS 470
            +       D Y Y A+I+  CR  K+ +A      +  SG+ P+   Y+  I+   +  
Sbjct: 559 RMQKEGISPDTYSYNALIQIFCRMNKVEKAKKLFDSMSRSGLNPDNYTYSAFIEALSESG 618

Query: 471 MKREAYQILREMRKNGLNPDAVTWRILDKL 500
              EA ++   M  NG +PD+    ++ K+
Sbjct: 619 RLEEAKKMFYSMEANGCSPDSYICNLIIKI 648



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 95/438 (21%), Positives = 194/438 (44%), Gaps = 42/438 (9%)

Query: 100 LSVNNAAFANLVDSLCREG-YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGA 158
           L+ +N+    L ++L R+G  +  V  + E    G  V E+  C  ++ S  R G  + +
Sbjct: 105 LAAHNSVHRALRNTLHRKGPALLSVDLLRELRNLGFRVTEDLLCA-LLASWGRLGLANYS 163

Query: 159 SRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEG 218
           + V   +   GL+P+   YN+++  L K      AY   ++      +    TY  L+ G
Sbjct: 164 AHVFCQISFLGLSPTTRLYNALIDALVKSNSIDLAYLKFQQMAADNCVADRFTYNTLIHG 223

Query: 219 LCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPD 278
           +C    +++A ++++ M  K          + +   C+     E   V   M  +   P+
Sbjct: 224 VCKVGVVDEALRLVRQMKDKGHFPNVFTYTMLIEGFCIASRVDEAFGVFETMKDSGVYPN 283

Query: 279 VITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT----TIIFGLLNVGRIQEA 334
             T+  +++G  +     +AL++L++ +  +    + V F     T+++ L N    +E 
Sbjct: 284 EATVRALVHGVFRCVDPSKALELLSEFL-DREQEQERVHFMLACDTVLYCLANNSMAKEM 342

Query: 335 LNLLYQVMPQRGYSPGIVTYNAVLRGLFR-------------LRRV-------------- 367
           +  L +V+ + GY PG   +N V+  L +             LR+               
Sbjct: 343 VVFLRRVLGRGGYFPGNSVFNVVMACLVKGAELRETCDVFEILRKQGVKAGIGAYLALIE 402

Query: 368 --------EEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
                   EE   V+  ++  G++++  +Y ++I+  C +  +D A   + D+     + 
Sbjct: 403 VLYKNEWREEGDRVYGQLISDGLISNVFSYNMIINCFCRAKLMDNASEAFRDMQVRGVVP 462

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           +   +  +I G C+ G I +A   L  L+++G+ P+I  ++ ++DG C++    EA +  
Sbjct: 463 NLVTFNTLINGHCKDGAIDKARKLLESLLENGLKPDIFTFSSIVDGLCQIKRTEEALECF 522

Query: 480 REMRKNGLNPDAVTWRIL 497
            EM + G+NP+AV + IL
Sbjct: 523 TEMIEWGINPNAVIYNIL 540



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 75/147 (51%), Gaps = 2/147 (1%)

Query: 356 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP 415
           A+L    RL     +  VF  +  +G+   +  Y  +ID L +SN +D A   +  +   
Sbjct: 149 ALLASWGRLGLANYSAHVFCQISFLGLSPTTRLYNALIDALVKSNSIDLAYLKFQQMAAD 208

Query: 416 SNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREA 475
           + + D + Y  +I G+C+ G + EA+  + ++ D G  PN+  Y ++I+G C  S   EA
Sbjct: 209 NCVADRFTYNTLIHGVCKVGVVDEALRLVRQMKDKGHFPNVFTYTMLIEGFCIASRVDEA 268

Query: 476 YQILREMRKNGLNPDAVTWRILDKLHG 502
           + +   M+ +G+ P+  T R L  +HG
Sbjct: 269 FGVFETMKDSGVYPNEATVRAL--VHG 293


>gi|42408237|dbj|BAD09394.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|215678545|dbj|BAG92200.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 624

 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 122/444 (27%), Positives = 212/444 (47%), Gaps = 43/444 (9%)

Query: 23  RGHVP-NVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVE 81
           +G  P +VV+YTT+I+G  R G++D AY +FD M   G  P+ +TYS ++  + +T+ ++
Sbjct: 200 KGRCPLDVVAYTTVINGLLREGQLDKAYSLFDAMLDRGPSPDVVTYSSIISALSKTQAMD 259

Query: 82  RANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFA 141
           +A     +++ RM +   +  +   + +LV   C  G   E   I + M           
Sbjct: 260 KAT----QVFTRMVKNGVMP-DCIMYTSLVHGYCSSGKPKEAIGIFKKM----------- 303

Query: 142 CGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGI 201
           C H                        G+ P +V+Y +++  LCK+G    A ++ +  +
Sbjct: 304 CRH------------------------GVEPDVVTYTALMDYLCKNGKSTEARKIFDSLV 339

Query: 202 QFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPT 261
           + G+ P   TY  L+ G   E  L +   +L  M+ K       I N+ + A        
Sbjct: 340 KRGHKPDSTTYGTLLHGYATEGALVEMHDLLDLMMKKGMQLGHHIFNMIMGAYAKHNKVD 399

Query: 262 ELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTI 321
           E L V   M Q    PD++   TV++  C  GR+++AL   N + + +  AP+ V FTT+
Sbjct: 400 EALLVFSNMRQQGLNPDIVNYGTVLDILCTAGRVDDALSQFNSLKS-EGLAPNIVVFTTL 458

Query: 322 IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG 381
           I GL    +  +   L ++ M  RG     + +NA++  L +  RV EAK +F+ M+ IG
Sbjct: 459 IHGLCTCDKWDKVEELAFE-MIDRGICLDTIFFNAIMGNLCKKGRVIEAKNLFDLMVRIG 517

Query: 382 VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAV 441
           +  ++ TY  +IDG C   ++DEA +    +V+      +  Y  +I G  ++G+I + +
Sbjct: 518 IEPNTNTYNTLIDGYCLDGKMDEAMKLLGVMVFNGVKPSDVTYNTIINGYSQNGRIEDGL 577

Query: 442 HFLYELVDSGVTPNIVCYNVVIDG 465
             L E+   GV P IV Y +++ G
Sbjct: 578 TLLREMDGKGVNPGIVTYEMLLQG 601



 Score =  164 bits (416), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 112/467 (23%), Positives = 220/467 (47%), Gaps = 6/467 (1%)

Query: 32  YTTLIHGYC-RTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKL 90
           ++ L+ G C R    D    V   M   G  P+  +Y++L++G+   +  ++A  L+  +
Sbjct: 137 FSPLLKGLCDRRRTSDAMDIVLRRMPELGCKPDLFSYTILLKGLCDDKTSQQALDLLHIM 196

Query: 91  WERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC 150
            +    +    ++  A+  +++ L REG +++ + + + M       +      +I +L 
Sbjct: 197 AD---HKGRCPLDVVAYTTVINGLLREGQLDKAYSLFDAMLDRGPSPDVVTYSSIISALS 253

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
           ++     A++V   M K G+ P  + Y S+VHG C  G    A  + ++  + G  P   
Sbjct: 254 KTQAMDKATQVFTRMVKNGVMPDCIMYTSLVHGYCSSGKPKEAIGIFKKMCRHGVEPDVV 313

Query: 211 TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM 270
           TY  L++ LC      +ARK+   ++ +     +      L          E+ ++L  M
Sbjct: 314 TYTALMDYLCKNGKSTEARKIFDSLVKRGHKPDSTTYGTLLHGYATEGALVEMHDLLDLM 373

Query: 271 LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR 330
           ++   Q      N ++  + K  +++EAL V ++M   +   PD V + T++  L   GR
Sbjct: 374 MKKGMQLGHHIFNMIMGAYAKHNKVDEALLVFSNMRQ-QGLNPDIVNYGTVLDILCTAGR 432

Query: 331 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYA 390
           + +AL+  +  +   G +P IV +  ++ GL    + ++ +E+   M+  G+  D+  + 
Sbjct: 433 VDDALSQ-FNSLKSEGLAPNIVVFTTLIHGLCTCDKWDKVEELAFEMIDRGICLDTIFFN 491

Query: 391 IVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 450
            ++  LC+  ++ EAK  +D +V      +   Y  +I G C  GK+ EA+  L  +V +
Sbjct: 492 AIMGNLCKKGRVIEAKNLFDLMVRIGIEPNTNTYNTLIDGYCLDGKMDEAMKLLGVMVFN 551

Query: 451 GVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           GV P+ V YN +I+G  +     +   +LREM   G+NP  VT+ +L
Sbjct: 552 GVKPSDVTYNTIINGYSQNGRIEDGLTLLREMDGKGVNPGIVTYEML 598



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 122/528 (23%), Positives = 227/528 (42%), Gaps = 49/528 (9%)

Query: 11  GEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVL---PNSLTY 67
           G+AH++F  +  RG   ++      +    R     VA  +F+ M   G     PN  TY
Sbjct: 44  GDAHQVFDRLLKRGDRASIFDLNRALSDVARASPA-VAISLFNRMPRAGATSAAPNIATY 102

Query: 68  SVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIA 127
            +++    R   ++ A   + ++         L ++   F+ L+  LC     ++   I 
Sbjct: 103 GIVIGCCRRLGRLDLAFATVGRVIT-----TGLRMSPILFSPLLKGLCDRRRTSDAMDIV 157

Query: 128 -EDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRK-RGLTP-SLVSYNSIVHGL 184
              MP+     + F+   ++  LC    +  A  ++++M   +G  P  +V+Y ++++GL
Sbjct: 158 LRRMPELGCKPDLFSYTILLKGLCDDKTSQQALDLLHIMADHKGRCPLDVVAYTTVINGL 217

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
            + G   +AY L +  +  G  P   TY  ++  L     ++KA +V   M+    +   
Sbjct: 218 LREGQLDKAYSLFDAMLDRGPSPDVVTYSSIISALSKTQAMDKATQVFTRMVKNGVMPDC 277

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
            +    +   C    P E + +   M +   +PDV+T   +++  CK G+  EA K+ + 
Sbjct: 278 IMYTSLVHGYCSSGKPKEAIGIFKKMCRHGVEPDVVTYTALMDYLCKNGKSTEARKIFDS 337

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVG----------------------------------- 329
           +V  +   PD+ T+ T++ G    G                                   
Sbjct: 338 LVK-RGHKPDSTTYGTLLHGYATEGALVEMHDLLDLMMKKGMQLGHHIFNMIMGAYAKHN 396

Query: 330 RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTY 389
           ++ EAL L++  M Q+G +P IV Y  VL  L    RV++A   FN +   G+  +   +
Sbjct: 397 KVDEAL-LVFSNMRQQGLNPDIVNYGTVLDILCTAGRVDDALSQFNSLKSEGLAPNIVVF 455

Query: 390 AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449
             +I GLC  ++ D+ +    +++      D   + A++  LC+ G++ EA +    +V 
Sbjct: 456 TTLIHGLCTCDKWDKVEELAFEMIDRGICLDTIFFNAIMGNLCKKGRVIEAKNLFDLMVR 515

Query: 450 SGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            G+ PN   YN +IDG C      EA ++L  M  NG+ P  VT+  +
Sbjct: 516 IGIEPNTNTYNTLIDGYCLDGKMDEAMKLLGVMVFNGVKPSDVTYNTI 563



 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 159/339 (46%), Gaps = 8/339 (2%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C   +  EA  +F  M   G  P+VV+YT L+   C+ G+   A K+FD +   G  P+S
Sbjct: 288 CSSGKPKEAIGIFKKMCRHGVEPDVVTYTALMDYLCKNGKSTEARKIFDSLVKRGHKPDS 347

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
            TY  L+ G       E A V M  L + M ++  + + +  F  ++ +  +   V+E  
Sbjct: 348 TTYGTLLHGYA----TEGALVEMHDLLDLMMKK-GMQLGHHIFNMIMGAYAKHNKVDEAL 402

Query: 125 RIAEDMPQGKSVNEEFA-CGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            +  +M Q + +N +    G ++D LC +GR   A      ++  GL P++V + +++HG
Sbjct: 403 LVFSNMRQ-QGLNPDIVNYGTVLDILCTAGRVDDALSQFNSLKSEGLAPNIVVFTTLIHG 461

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LC      +  +L  E I  G       +  ++  LC +  + +A+ +   M+       
Sbjct: 462 LCTCDKWDKVEELAFEMIDRGICLDTIFFNAIMGNLCKKGRVIEAKNLFDLMVRIGIEPN 521

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
           T   N  +   CL     E + +L  M+    +P  +T NT+ING+ + GRIE+ L +L 
Sbjct: 522 TNTYNTLIDGYCLDGKMDEAMKLLGVMVFNGVKPSDVTYNTIINGYSQNGRIEDGLTLLR 581

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVM 342
           +M  GK   P  VT+  ++ GL   GR   A  L  +++
Sbjct: 582 EM-DGKGVNPGIVTYEMLLQGLFQAGRTVAAKELYLRMI 619



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 117/224 (52%), Gaps = 3/224 (1%)

Query: 280 ITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLY 339
           I  + ++ G C   R  +A+ ++   +    C PD  ++T ++ GL +    Q+AL+LL+
Sbjct: 135 ILFSPLLKGLCDRRRTSDAMDIVLRRMPELGCKPDLFSYTILLKGLCDDKTSQQALDLLH 194

Query: 340 QVMPQRGYSP-GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE 398
            +   +G  P  +V Y  V+ GL R  ++++A  +F+ ML  G   D  TY+ +I  L +
Sbjct: 195 IMADHKGRCPLDVVAYTTVINGLLREGQLDKAYSLFDAMLDRGPSPDVVTYSSIISALSK 254

Query: 399 SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVC 458
           +  +D+A + +  +V    + D  +Y +++ G C SGK  EA+    ++   GV P++V 
Sbjct: 255 TQAMDKATQVFTRMVKNGVMPDCIMYTSLVHGYCSSGKPKEAIGIFKKMCRHGVEPDVVT 314

Query: 459 YNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
           Y  ++D  CK     EA +I   + K G  PD+ T+  L  LHG
Sbjct: 315 YTALMDYLCKNGKSTEARKIFDSLVKRGHKPDSTTYGTL--LHG 356



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 95/197 (48%), Gaps = 7/197 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   RV +A   F  +KS G  PN+V +TTLIHG C   + D   ++  EM   G+
Sbjct: 424 LDILCTAGRVDDALSQFNSLKSEGLAPNIVVFTTLIHGLCTCDKWDKVEELAFEMIDRGI 483

Query: 61  LPNSLTYSVLVRGVLRT-RDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGY 119
             +++ ++ ++  + +  R +E  N  +F L  R+  E     N   +  L+D  C +G 
Sbjct: 484 CLDTIFFNAIMGNLCKKGRVIEAKN--LFDLMVRIGIEP----NTNTYNTLIDGYCLDGK 537

Query: 120 VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           ++E  ++   M        +     +I+   ++GR      ++  M  +G+ P +V+Y  
Sbjct: 538 MDEAMKLLGVMVFNGVKPSDVTYNTIINGYSQNGRIEDGLTLLREMDGKGVNPGIVTYEM 597

Query: 180 IVHGLCKHGGCMRAYQL 196
           ++ GL + G  + A +L
Sbjct: 598 LLQGLFQAGRTVAAKEL 614


>gi|449455320|ref|XP_004145401.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
 gi|449471531|ref|XP_004153336.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
          Length = 670

 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 128/474 (27%), Positives = 228/474 (48%), Gaps = 23/474 (4%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC L ++  A   F +M  +   P+V +Y+TL++G C+   +D A  + DEM+  G LPN
Sbjct: 208 LCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQAEGCLPN 267

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +T++VL+  + +  D+ RA  L+  ++ +         N   +  L+  LC +G +++ 
Sbjct: 268 PVTFNVLIDALSKNGDLSRAAKLVDNMFLK-----GCVPNEVTYNTLIHGLCLKGKLDKA 322

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             + E M   K V  +   G +I+ L +  R      ++  M +RG   +   Y+S++ G
Sbjct: 323 LSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLISG 382

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           L K G    A +L +E  + G  P+   Y   ++GLC +   ++A  +LQ MLSK  +  
Sbjct: 383 LFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPN 442

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               +  ++      +  + + V   M+    + +V+  + ++NG C+ GR+ EAL V  
Sbjct: 443 AFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCSVLLNGLCESGRLREALTVWT 502

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYS-PGIVTYNAVLRGLF 362
            M+ G+   PD V ++++I GL +VG + + L L Y++  Q   S P +VTYN +   L 
Sbjct: 503 HML-GEGLKPDVVAYSSMIKGLCDVGSVDKGLKLFYEMQCQEPKSRPDVVTYNILFNALC 561

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCES-NQLDEAKRFWDDIVWPSNIHDN 421
           R   +  A ++ N ML  G   DS T  I ++ L E  N   + + F D++V        
Sbjct: 562 RQDNLTRAIDLLNSMLDEGCDPDSLTCNIFLETLRERINPPQDGRLFLDELV-------- 613

Query: 422 YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREA 475
                 ++ L R  K+  A+  + E++   + P    ++ VI   CK    RE 
Sbjct: 614 ------VRLLKRERKL-SALRIVEEMLLRFLPPEPSTWSRVIQRTCKPKRIRET 660



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 122/500 (24%), Positives = 233/500 (46%), Gaps = 49/500 (9%)

Query: 5   CGLSRV-GEAHKLFFDMKSRGHVPNVV-SYTTLIHGYCRTGEMDVAYKVFDEM---RHCG 59
           CG + + GEA   F  M +  H    V S+ ++++   + G+   A+K +  +      G
Sbjct: 134 CGKAHLPGEAVNFFHRMANDLHCKQTVKSFNSVLNVIIQEGDFSYAFKFYLHVFGANSKG 193

Query: 60  VLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGY 119
             PN LTY+++++                                        +LC+ G 
Sbjct: 194 FQPNLLTYNLIIK----------------------------------------ALCKLGQ 213

Query: 120 VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           ++       +MP      + F    +++ LC+  R   A  ++  M+  G  P+ V++N 
Sbjct: 214 IDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQAEGCLPNPVTFNV 273

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++  L K+G   RA +L++     G +P+E TY  L+ GLC +  L+KA  +L+ M+S K
Sbjct: 274 LIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLEKMVSSK 333

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
            V         +  L   +   + +++L+ M +   + +    +++I+G  K G+ E A+
Sbjct: 334 CVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLISGLFKEGKSENAV 393

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           ++  +M A K C P+ V +   I GL    +  EA ++L Q M  +G+ P   TY+++++
Sbjct: 394 RLWKEM-AEKGCKPNVVVYGAFIDGLCRDEKPDEAEDIL-QEMLSKGFLPNAFTYSSLMK 451

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
           G F+    ++A  V+  M+   +  +    +++++GLCES +L EA   W  ++      
Sbjct: 452 GFFKKGDSQKAILVWKEMMSQDMRHNVVCCSVLLNGLCESGRLREALTVWTHMLGEGLKP 511

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELV--DSGVTPNIVCYNVVIDGACKLSMKREAYQ 477
           D   Y++MIKGLC  G + + +   YE+   +    P++V YN++ +  C+      A  
Sbjct: 512 DVVAYSSMIKGLCDVGSVDKGLKLFYEMQCQEPKSRPDVVTYNILFNALCRQDNLTRAID 571

Query: 478 ILREMRKNGLNPDAVTWRIL 497
           +L  M   G +PD++T  I 
Sbjct: 572 LLNSMLDEGCDPDSLTCNIF 591



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 114/473 (24%), Positives = 224/473 (47%), Gaps = 11/473 (2%)

Query: 30  VSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFK 89
            ++  LI  Y  + E    ++V D M+  G +     + ++ +   +      A      
Sbjct: 90  ATFYRLIENYATSREFHFIHQVLDRMKREGRVLTETIFILIFKACGKAHLPGEA----VN 145

Query: 90  LWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE---FACGHMI 146
            + RM  +        +F ++++ + +EG  +  F+    +    S   +        +I
Sbjct: 146 FFHRMANDLHCKQTVKSFNSVLNVIIQEGDFSYAFKFYLHVFGANSKGFQPNLLTYNLII 205

Query: 147 DSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL 206
            +LC+ G+   A      M  +   P + +Y+++++GLCK      A  LL+E    G L
Sbjct: 206 KALCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQAEGCL 265

Query: 207 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 266
           P+  T+ VL++ L    DL +A K++  M  K  V      N  +  LCL     + L++
Sbjct: 266 PNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSL 325

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
           L  M+ ++C P+ +T  T+ING  K  R E+ + +L  M      A + + ++++I GL 
Sbjct: 326 LEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKANEYI-YSSLISGLF 384

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
             G+ + A+  L++ M ++G  P +V Y A + GL R  + +EA+++   ML  G + ++
Sbjct: 385 KEGKSENAVR-LWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPNA 443

Query: 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE 446
            TY+ ++ G  +     +A   W +++     H+    + ++ GLC SG++ EA+     
Sbjct: 444 FTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCSVLLNGLCESGRLREALTVWTH 503

Query: 447 LVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM--RKNGLNPDAVTWRIL 497
           ++  G+ P++V Y+ +I G C +    +  ++  EM  ++    PD VT+ IL
Sbjct: 504 MLGEGLKPDVVAYSSMIKGLCDVGSVDKGLKLFYEMQCQEPKSRPDVVTYNIL 556



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 101/352 (28%), Positives = 180/352 (51%), Gaps = 3/352 (0%)

Query: 162 VYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCG 221
           V+    +G  P+L++YN I+  LCK G   RA     E       P   TY  L+ GLC 
Sbjct: 186 VFGANSKGFQPNLLTYNLIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCK 245

Query: 222 ESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVIT 281
           E  +++A  +L  M ++  +      N+ + AL    + +    ++  M    C P+ +T
Sbjct: 246 ERRVDEAVFLLDEMQAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVT 305

Query: 282 LNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQV 341
            NT+I+G C  G++++AL +L  MV+ K C P+ VT+ TII GL+   R ++ +++L   
Sbjct: 306 YNTLIHGLCLKGKLDKALSLLEKMVSSK-CVPNQVTYGTIINGLVKQRRAEDGVHILMS- 363

Query: 342 MPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ 401
           M +RG       Y++++ GLF+  + E A  ++  M   G   +   Y   IDGLC   +
Sbjct: 364 MEERGQKANEYIYSSLISGLFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEK 423

Query: 402 LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNV 461
            DEA+    +++    + + + Y++++KG  + G   +A+    E++   +  N+VC +V
Sbjct: 424 PDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCSV 483

Query: 462 VIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN-DFGLRI 512
           +++G C+    REA  +   M   GL PD V +  + K   + G+ D GL++
Sbjct: 484 LLNGLCESGRLREALTVWTHMLGEGLKPDVVAYSSMIKGLCDVGSVDKGLKL 535



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 98/362 (27%), Positives = 177/362 (48%), Gaps = 7/362 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M+ LC   RV EA  L  +M++ G +PN V++  LI    + G++  A K+ D M   G 
Sbjct: 240 MNGLCKERRVDEAVFLLDEMQAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGC 299

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +PN +TY+ L+ G+     +++A      L E+M   + +  N   +  +++ L ++   
Sbjct: 300 VPNEVTYNTLIHGLCLKGKLDKA----LSLLEKMVSSKCVP-NQVTYGTIINGLVKQRRA 354

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +   I   M +      E+    +I  L + G++  A R+   M ++G  P++V Y + 
Sbjct: 355 EDGVHILMSMEERGQKANEYIYSSLISGLFKEGKSENAVRLWKEMAEKGCKPNVVVYGAF 414

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GLC+      A  +L+E +  G+LP+  TY  L++G   + D +KA  V + M+S+  
Sbjct: 415 IDGLCRDEKPDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDM 474

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                 C++ L  LC      E L V   ML    +PDV+  +++I G C +G +++ LK
Sbjct: 475 RHNVVCCSVLLNGLCESGRLREALTVWTHMLGEGLKPDVVAYSSMIKGLCDVGSVDKGLK 534

Query: 301 VLNDMVAGKFCA-PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           +  +M   +  + PD VT+  +   L     +  A++LL  ++ + G  P  +T N  L 
Sbjct: 535 LFYEMQCQEPKSRPDVVTYNILFNALCRQDNLTRAIDLLNSMLDE-GCDPDSLTCNIFLE 593

Query: 360 GL 361
            L
Sbjct: 594 TL 595



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 136/296 (45%), Gaps = 5/296 (1%)

Query: 195 QLLEEGIQFG-YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRA 253
           Q+ +   QFG Y   + T+  L+E      +     +VL  M  +  V    I  +  +A
Sbjct: 74  QIFKSRPQFGSYKLGDATFYRLIENYATSREFHFIHQVLDRMKREGRVLTETIFILIFKA 133

Query: 254 LCLIKNPTELLNVLVFMLQT-QCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG--KF 310
                 P E +N    M     C+  V + N+V+N   + G    A K    +     K 
Sbjct: 134 CGKAHLPGEAVNFFHRMANDLHCKQTVKSFNSVLNVIIQEGDFSYAFKFYLHVFGANSKG 193

Query: 311 CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEA 370
             P+ +T+  II  L  +G+I  A++  ++ MP +  +P + TY+ ++ GL + RRV+EA
Sbjct: 194 FQPNLLTYNLIIKALCKLGQIDRAVDT-FREMPLKNCNPDVFTYSTLMNGLCKERRVDEA 252

Query: 371 KEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKG 430
             + + M   G + +  T+ ++ID L ++  L  A +  D++     + +   Y  +I G
Sbjct: 253 VFLLDEMQAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHG 312

Query: 431 LCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG 486
           LC  GK+ +A+  L ++V S   PN V Y  +I+G  K     +   IL  M + G
Sbjct: 313 LCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERG 368


>gi|222639781|gb|EEE67913.1| hypothetical protein OsJ_25766 [Oryza sativa Japonica Group]
          Length = 625

 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 122/444 (27%), Positives = 212/444 (47%), Gaps = 43/444 (9%)

Query: 23  RGHVP-NVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVE 81
           +G  P +VV+YTT+I+G  R G++D AY +FD M   G  P+ +TYS ++  + +T+ ++
Sbjct: 201 KGRCPLDVVAYTTVINGLLREGQLDKAYSLFDAMLDRGPSPDVVTYSSIISALSKTQAMD 260

Query: 82  RANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFA 141
           +A     +++ RM +   +  +   + +LV   C  G   E   I + M           
Sbjct: 261 KAT----QVFTRMVKNGVMP-DCIMYTSLVHGYCSSGKPKEAIGIFKKM----------- 304

Query: 142 CGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGI 201
                   CR                 G+ P +V+Y +++  LCK+G    A ++ +  +
Sbjct: 305 --------CR----------------HGVEPDVVTYTALMDYLCKNGKSTEARKIFDSLV 340

Query: 202 QFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPT 261
           + G+ P   TY  L+ G   E  L +   +L  M+ K       I N+ + A        
Sbjct: 341 KRGHKPDSTTYGTLLHGYATEGALVEMHDLLDLMMKKGMQLGHHIFNMIMGAYAKHNKVD 400

Query: 262 ELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTI 321
           E L V   M Q    PD++   TV++  C  GR+++AL   N + + +  AP+ V FTT+
Sbjct: 401 EALLVFSNMRQQGLNPDIVNYGTVLDILCTAGRVDDALSQFNSLKS-EGLAPNIVVFTTL 459

Query: 322 IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG 381
           I GL    +  +   L ++ M  RG     + +NA++  L +  RV EAK +F+ M+ IG
Sbjct: 460 IHGLCTCDKWDKVEELAFE-MIDRGICLDTIFFNAIMGNLCKKGRVIEAKNLFDLMVRIG 518

Query: 382 VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAV 441
           +  ++ TY  +IDG C   ++DEA +    +V+      +  Y  +I G  ++G+I + +
Sbjct: 519 IEPNTNTYNTLIDGYCLDGKMDEAMKLLGVMVFNGVKPSDVTYNTIINGYSQNGRIEDGL 578

Query: 442 HFLYELVDSGVTPNIVCYNVVIDG 465
             L E+   GV P IV Y +++ G
Sbjct: 579 TLLREMDGKGVNPGIVTYEMLLQG 602



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 114/476 (23%), Positives = 223/476 (46%), Gaps = 11/476 (2%)

Query: 25  HVPNVVSYTT---LIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVE 81
           H PN +  ++   L     R   MD+   V   M   G  P+  +Y++L++G+   +  +
Sbjct: 132 HEPNPLQSSSQGPLCTAGGRAMRMDI---VLRRMPELGCKPDLFSYTILLKGLCDDKTSQ 188

Query: 82  RANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFA 141
           +A  L+  + +    +    ++  A+  +++ L REG +++ + + + M       +   
Sbjct: 189 QALDLLHIMAD---HKGRCPLDVVAYTTVINGLLREGQLDKAYSLFDAMLDRGPSPDVVT 245

Query: 142 CGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGI 201
              +I +L ++     A++V   M K G+ P  + Y S+VHG C  G    A  + ++  
Sbjct: 246 YSSIISALSKTQAMDKATQVFTRMVKNGVMPDCIMYTSLVHGYCSSGKPKEAIGIFKKMC 305

Query: 202 QFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPT 261
           + G  P   TY  L++ LC      +ARK+   ++ +     +      L          
Sbjct: 306 RHGVEPDVVTYTALMDYLCKNGKSTEARKIFDSLVKRGHKPDSTTYGTLLHGYATEGALV 365

Query: 262 ELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTI 321
           E+ ++L  M++   Q      N ++  + K  +++EAL V ++M   +   PD V + T+
Sbjct: 366 EMHDLLDLMMKKGMQLGHHIFNMIMGAYAKHNKVDEALLVFSNMRQ-QGLNPDIVNYGTV 424

Query: 322 IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG 381
           +  L   GR+ +AL+  +  +   G +P IV +  ++ GL    + ++ +E+   M+  G
Sbjct: 425 LDILCTAGRVDDALSQ-FNSLKSEGLAPNIVVFTTLIHGLCTCDKWDKVEELAFEMIDRG 483

Query: 382 VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAV 441
           +  D+  +  ++  LC+  ++ EAK  +D +V      +   Y  +I G C  GK+ EA+
Sbjct: 484 ICLDTIFFNAIMGNLCKKGRVIEAKNLFDLMVRIGIEPNTNTYNTLIDGYCLDGKMDEAM 543

Query: 442 HFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
             L  +V +GV P+ V YN +I+G  +     +   +LREM   G+NP  VT+ +L
Sbjct: 544 KLLGVMVFNGVKPSDVTYNTIINGYSQNGRIEDGLTLLREMDGKGVNPGIVTYEML 599



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 117/407 (28%), Positives = 187/407 (45%), Gaps = 45/407 (11%)

Query: 6   GLSRVGE---AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           GL R G+   A+ LF  M  RG  P+VV+Y+++I    +T  MD A +VF  M   GV+P
Sbjct: 217 GLLREGQLDKAYSLFDAMLDRGPSPDVVTYSSIISALSKTQAMDKATQVFTRMVKNGVMP 276

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           + + Y+ LV G   +   + A + +FK   R   E D+      +  L+D LC+ G   E
Sbjct: 277 DCIMYTSLVHGYCSSGKPKEA-IGIFKKMCRHGVEPDV----VTYTALMDYLCKNGKSTE 331

Query: 123 VFRIAEDMPQGKSVNEEFACG----------------HMIDSLCRSGRNHG--------- 157
             +I + + +     +    G                 ++D + + G   G         
Sbjct: 332 ARKIFDSLVKRGHKPDSTTYGTLLHGYATEGALVEMHDLLDLMMKKGMQLGHHIFNMIMG 391

Query: 158 ----------ASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLP 207
                     A  V   MR++GL P +V+Y +++  LC  G    A          G  P
Sbjct: 392 AYAKHNKVDEALLVFSNMRQQGLNPDIVNYGTVLDILCTAGRVDDALSQFNSLKSEGLAP 451

Query: 208 SEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVL 267
           +   +  L+ GLC     +K  ++   M+ +     T   N  +  LC      E  N+ 
Sbjct: 452 NIVVFTTLIHGLCTCDKWDKVEELAFEMIDRGICLDTIFFNAIMGNLCKKGRVIEAKNLF 511

Query: 268 VFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLN 327
             M++   +P+  T NT+I+G+C  G+++EA+K+L  MV      P  VT+ TII G   
Sbjct: 512 DLMVRIGIEPNTNTYNTLIDGYCLDGKMDEAMKLLGVMVFNGV-KPSDVTYNTIINGYSQ 570

Query: 328 VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVF 374
            GRI++ L LL + M  +G +PGIVTY  +L+GLF+  R   AKE++
Sbjct: 571 NGRIEDGLTLLRE-MDGKGVNPGIVTYEMLLQGLFQAGRTVAAKELY 616



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 121/527 (22%), Positives = 227/527 (43%), Gaps = 46/527 (8%)

Query: 11  GEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVL---PNSLTY 67
           G+AH++F  +  RG   ++      +    R     VA  +F+ M   G     PN  TY
Sbjct: 44  GDAHQVFDRLLKRGDRASIFDLNRALSDVARASPA-VAISLFNRMPRAGATSAAPNIATY 102

Query: 68  SVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIA 127
            +++    R   ++ A   + ++       E   + +++   L  +  R   ++ V R  
Sbjct: 103 GIVIGCCRRLGRLDLAFATVGRVITTGLRHEPNPLQSSSQGPLCTAGGRAMRMDIVLR-- 160

Query: 128 EDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRK-RGLTP-SLVSYNSIVHGLC 185
             MP+     + F+   ++  LC    +  A  ++++M   +G  P  +V+Y ++++GL 
Sbjct: 161 -RMPELGCKPDLFSYTILLKGLCDDKTSQQALDLLHIMADHKGRCPLDVVAYTTVINGLL 219

Query: 186 KHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTR 245
           + G   +AY L +  +  G  P   TY  ++  L     ++KA +V   M+    +    
Sbjct: 220 REGQLDKAYSLFDAMLDRGPSPDVVTYSSIISALSKTQAMDKATQVFTRMVKNGVMPDCI 279

Query: 246 ICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM 305
           +    +   C    P E + +   M +   +PDV+T   +++  CK G+  EA K+ + +
Sbjct: 280 MYTSLVHGYCSSGKPKEAIGIFKKMCRHGVEPDVVTYTALMDYLCKNGKSTEARKIFDSL 339

Query: 306 VAGKFCAPDAVTFTTIIFGLLNVG-----------------------------------R 330
           V  +   PD+ T+ T++ G    G                                   +
Sbjct: 340 VK-RGHKPDSTTYGTLLHGYATEGALVEMHDLLDLMMKKGMQLGHHIFNMIMGAYAKHNK 398

Query: 331 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYA 390
           + EAL L++  M Q+G +P IV Y  VL  L    RV++A   FN +   G+  +   + 
Sbjct: 399 VDEAL-LVFSNMRQQGLNPDIVNYGTVLDILCTAGRVDDALSQFNSLKSEGLAPNIVVFT 457

Query: 391 IVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 450
            +I GLC  ++ D+ +    +++      D   + A++  LC+ G++ EA +    +V  
Sbjct: 458 TLIHGLCTCDKWDKVEELAFEMIDRGICLDTIFFNAIMGNLCKKGRVIEAKNLFDLMVRI 517

Query: 451 GVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           G+ PN   YN +IDG C      EA ++L  M  NG+ P  VT+  +
Sbjct: 518 GIEPNTNTYNTLIDGYCLDGKMDEAMKLLGVMVFNGVKPSDVTYNTI 564



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 159/339 (46%), Gaps = 8/339 (2%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C   +  EA  +F  M   G  P+VV+YT L+   C+ G+   A K+FD +   G  P+S
Sbjct: 289 CSSGKPKEAIGIFKKMCRHGVEPDVVTYTALMDYLCKNGKSTEARKIFDSLVKRGHKPDS 348

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
            TY  L+ G       E A V M  L + M ++  + + +  F  ++ +  +   V+E  
Sbjct: 349 TTYGTLLHGYA----TEGALVEMHDLLDLMMKK-GMQLGHHIFNMIMGAYAKHNKVDEAL 403

Query: 125 RIAEDMPQGKSVNEEFA-CGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            +  +M Q + +N +    G ++D LC +GR   A      ++  GL P++V + +++HG
Sbjct: 404 LVFSNMRQ-QGLNPDIVNYGTVLDILCTAGRVDDALSQFNSLKSEGLAPNIVVFTTLIHG 462

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LC      +  +L  E I  G       +  ++  LC +  + +A+ +   M+       
Sbjct: 463 LCTCDKWDKVEELAFEMIDRGICLDTIFFNAIMGNLCKKGRVIEAKNLFDLMVRIGIEPN 522

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
           T   N  +   CL     E + +L  M+    +P  +T NT+ING+ + GRIE+ L +L 
Sbjct: 523 TNTYNTLIDGYCLDGKMDEAMKLLGVMVFNGVKPSDVTYNTIINGYSQNGRIEDGLTLLR 582

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVM 342
           +M  GK   P  VT+  ++ GL   GR   A  L  +++
Sbjct: 583 EM-DGKGVNPGIVTYEMLLQGLFQAGRTVAAKELYLRMI 620



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 61/193 (31%), Positives = 104/193 (53%), Gaps = 3/193 (1%)

Query: 311 CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSP-GIVTYNAVLRGLFRLRRVEE 369
           C PD  ++T ++ GL +    Q+AL+LL+ +   +G  P  +V Y  V+ GL R  ++++
Sbjct: 167 CKPDLFSYTILLKGLCDDKTSQQALDLLHIMADHKGRCPLDVVAYTTVINGLLREGQLDK 226

Query: 370 AKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIK 429
           A  +F+ ML  G   D  TY+ +I  L ++  +D+A + +  +V    + D  +Y +++ 
Sbjct: 227 AYSLFDAMLDRGPSPDVVTYSSIISALSKTQAMDKATQVFTRMVKNGVMPDCIMYTSLVH 286

Query: 430 GLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNP 489
           G C SGK  EA+    ++   GV P++V Y  ++D  CK     EA +I   + K G  P
Sbjct: 287 GYCSSGKPKEAIGIFKKMCRHGVEPDVVTYTALMDYLCKNGKSTEARKIFDSLVKRGHKP 346

Query: 490 DAVTWRILDKLHG 502
           D+ T+  L  LHG
Sbjct: 347 DSTTYGTL--LHG 357



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 95/197 (48%), Gaps = 7/197 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   RV +A   F  +KS G  PN+V +TTLIHG C   + D   ++  EM   G+
Sbjct: 425 LDILCTAGRVDDALSQFNSLKSEGLAPNIVVFTTLIHGLCTCDKWDKVEELAFEMIDRGI 484

Query: 61  LPNSLTYSVLVRGVLRT-RDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGY 119
             +++ ++ ++  + +  R +E  N  +F L  R+  E     N   +  L+D  C +G 
Sbjct: 485 CLDTIFFNAIMGNLCKKGRVIEAKN--LFDLMVRIGIEP----NTNTYNTLIDGYCLDGK 538

Query: 120 VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           ++E  ++   M        +     +I+   ++GR      ++  M  +G+ P +V+Y  
Sbjct: 539 MDEAMKLLGVMVFNGVKPSDVTYNTIINGYSQNGRIEDGLTLLREMDGKGVNPGIVTYEM 598

Query: 180 IVHGLCKHGGCMRAYQL 196
           ++ GL + G  + A +L
Sbjct: 599 LLQGLFQAGRTVAAKEL 615


>gi|449502431|ref|XP_004161638.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
          Length = 646

 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 128/474 (27%), Positives = 228/474 (48%), Gaps = 23/474 (4%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC L ++  A   F +M  +   P+V +Y+TL++G C+   +D A  + DEM+  G LPN
Sbjct: 184 LCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQAEGCLPN 243

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +T++VL+  + +  D+ RA  L+  ++ +         N   +  L+  LC +G +++ 
Sbjct: 244 PVTFNVLIDALSKNGDLSRAAKLVDNMFLK-----GCVPNEVTYNTLIHGLCLKGKLDKA 298

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             + E M   K V  +   G +I+ L +  R      ++  M +RG   +   Y+S++ G
Sbjct: 299 LSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLISG 358

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           L K G    A +L +E  + G  P+   Y   ++GLC +   ++A  +LQ MLSK  +  
Sbjct: 359 LFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPN 418

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               +  ++      +  + + V   M+    + +V+  + ++NG C+ GR+ EAL V  
Sbjct: 419 AFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCSVLLNGLCESGRLREALTVWT 478

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYS-PGIVTYNAVLRGLF 362
            M+ G+   PD V ++++I GL +VG + + L L Y++  Q   S P +VTYN +   L 
Sbjct: 479 HML-GEGLKPDVVAYSSMIKGLCDVGSVDKGLKLFYEMQCQEPKSRPDVVTYNILFNALC 537

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCES-NQLDEAKRFWDDIVWPSNIHDN 421
           R   +  A ++ N ML  G   DS T  I ++ L E  N   + + F D++V        
Sbjct: 538 RQDNLTRAIDLLNSMLDEGCDPDSLTCNIFLETLRERINPPQDGRLFLDELV-------- 589

Query: 422 YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREA 475
                 ++ L R  K+  A+  + E++   + P    ++ VI   CK    RE 
Sbjct: 590 ------VRLLKRERKL-SALRIVEEMLLRFLPPEPSTWSRVIQRTCKPKRIRET 636



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 122/500 (24%), Positives = 233/500 (46%), Gaps = 49/500 (9%)

Query: 5   CGLSRV-GEAHKLFFDMKSRGHVPNVV-SYTTLIHGYCRTGEMDVAYKVFDEM---RHCG 59
           CG + + GEA   F  M +  H    V S+ ++++   + G+   A+K +  +      G
Sbjct: 110 CGKAHLPGEAVNFFHRMANDLHCKQTVKSFNSVLNVIIQEGDFSYAFKFYLHVFGANSKG 169

Query: 60  VLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGY 119
             PN LTY+++++                                        +LC+ G 
Sbjct: 170 FQPNLLTYNLIIK----------------------------------------ALCKLGQ 189

Query: 120 VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           ++       +MP      + F    +++ LC+  R   A  ++  M+  G  P+ V++N 
Sbjct: 190 IDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQAEGCLPNPVTFNV 249

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++  L K+G   RA +L++     G +P+E TY  L+ GLC +  L+KA  +L+ M+S K
Sbjct: 250 LIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLEKMVSSK 309

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
            V         +  L   +   + +++L+ M +   + +    +++I+G  K G+ E A+
Sbjct: 310 CVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLISGLFKEGKSENAV 369

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           ++  +M A K C P+ V +   I GL    +  EA ++L Q M  +G+ P   TY+++++
Sbjct: 370 RLWKEM-AEKGCKPNVVVYGAFIDGLCRDEKPDEAEDIL-QEMLSKGFLPNAFTYSSLMK 427

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
           G F+    ++A  V+  M+   +  +    +++++GLCES +L EA   W  ++      
Sbjct: 428 GFFKKGDSQKAILVWKEMMSQDMRHNVVCCSVLLNGLCESGRLREALTVWTHMLGEGLKP 487

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELV--DSGVTPNIVCYNVVIDGACKLSMKREAYQ 477
           D   Y++MIKGLC  G + + +   YE+   +    P++V YN++ +  C+      A  
Sbjct: 488 DVVAYSSMIKGLCDVGSVDKGLKLFYEMQCQEPKSRPDVVTYNILFNALCRQDNLTRAID 547

Query: 478 ILREMRKNGLNPDAVTWRIL 497
           +L  M   G +PD++T  I 
Sbjct: 548 LLNSMLDEGCDPDSLTCNIF 567



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 114/473 (24%), Positives = 224/473 (47%), Gaps = 11/473 (2%)

Query: 30  VSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFK 89
            ++  LI  Y  + E    ++V D M+  G +     + ++ +   +      A      
Sbjct: 66  ATFYRLIENYATSREFHFIHQVLDRMKREGRVLTETIFILIFKACGKAHLPGEA----VN 121

Query: 90  LWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE---FACGHMI 146
            + RM  +        +F ++++ + +EG  +  F+    +    S   +        +I
Sbjct: 122 FFHRMANDLHCKQTVKSFNSVLNVIIQEGDFSYAFKFYLHVFGANSKGFQPNLLTYNLII 181

Query: 147 DSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL 206
            +LC+ G+   A      M  +   P + +Y+++++GLCK      A  LL+E    G L
Sbjct: 182 KALCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQAEGCL 241

Query: 207 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 266
           P+  T+ VL++ L    DL +A K++  M  K  V      N  +  LCL     + L++
Sbjct: 242 PNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSL 301

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
           L  M+ ++C P+ +T  T+ING  K  R E+ + +L  M      A + + ++++I GL 
Sbjct: 302 LEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKANEYI-YSSLISGLF 360

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
             G+ + A+  L++ M ++G  P +V Y A + GL R  + +EA+++   ML  G + ++
Sbjct: 361 KEGKSENAVR-LWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPNA 419

Query: 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE 446
            TY+ ++ G  +     +A   W +++     H+    + ++ GLC SG++ EA+     
Sbjct: 420 FTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCSVLLNGLCESGRLREALTVWTH 479

Query: 447 LVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM--RKNGLNPDAVTWRIL 497
           ++  G+ P++V Y+ +I G C +    +  ++  EM  ++    PD VT+ IL
Sbjct: 480 MLGEGLKPDVVAYSSMIKGLCDVGSVDKGLKLFYEMQCQEPKSRPDVVTYNIL 532



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 101/352 (28%), Positives = 180/352 (51%), Gaps = 3/352 (0%)

Query: 162 VYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCG 221
           V+    +G  P+L++YN I+  LCK G   RA     E       P   TY  L+ GLC 
Sbjct: 162 VFGANSKGFQPNLLTYNLIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCK 221

Query: 222 ESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVIT 281
           E  +++A  +L  M ++  +      N+ + AL    + +    ++  M    C P+ +T
Sbjct: 222 ERRVDEAVFLLDEMQAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVT 281

Query: 282 LNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQV 341
            NT+I+G C  G++++AL +L  MV+ K C P+ VT+ TII GL+   R ++ +++L   
Sbjct: 282 YNTLIHGLCLKGKLDKALSLLEKMVSSK-CVPNQVTYGTIINGLVKQRRAEDGVHILMS- 339

Query: 342 MPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ 401
           M +RG       Y++++ GLF+  + E A  ++  M   G   +   Y   IDGLC   +
Sbjct: 340 MEERGQKANEYIYSSLISGLFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEK 399

Query: 402 LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNV 461
            DEA+    +++    + + + Y++++KG  + G   +A+    E++   +  N+VC +V
Sbjct: 400 PDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCSV 459

Query: 462 VIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN-DFGLRI 512
           +++G C+    REA  +   M   GL PD V +  + K   + G+ D GL++
Sbjct: 460 LLNGLCESGRLREALTVWTHMLGEGLKPDVVAYSSMIKGLCDVGSVDKGLKL 511



 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 98/362 (27%), Positives = 177/362 (48%), Gaps = 7/362 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M+ LC   RV EA  L  +M++ G +PN V++  LI    + G++  A K+ D M   G 
Sbjct: 216 MNGLCKERRVDEAVFLLDEMQAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGC 275

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +PN +TY+ L+ G+     +++A      L E+M   + +  N   +  +++ L ++   
Sbjct: 276 VPNEVTYNTLIHGLCLKGKLDKA----LSLLEKMVSSKCVP-NQVTYGTIINGLVKQRRA 330

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +   I   M +      E+    +I  L + G++  A R+   M ++G  P++V Y + 
Sbjct: 331 EDGVHILMSMEERGQKANEYIYSSLISGLFKEGKSENAVRLWKEMAEKGCKPNVVVYGAF 390

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GLC+      A  +L+E +  G+LP+  TY  L++G   + D +KA  V + M+S+  
Sbjct: 391 IDGLCRDEKPDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDM 450

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                 C++ L  LC      E L V   ML    +PDV+  +++I G C +G +++ LK
Sbjct: 451 RHNVVCCSVLLNGLCESGRLREALTVWTHMLGEGLKPDVVAYSSMIKGLCDVGSVDKGLK 510

Query: 301 VLNDMVAGKFCA-PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           +  +M   +  + PD VT+  +   L     +  A++LL  ++ + G  P  +T N  L 
Sbjct: 511 LFYEMQCQEPKSRPDVVTYNILFNALCRQDNLTRAIDLLNSMLDE-GCDPDSLTCNIFLE 569

Query: 360 GL 361
            L
Sbjct: 570 TL 571



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 136/296 (45%), Gaps = 5/296 (1%)

Query: 195 QLLEEGIQFG-YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRA 253
           Q+ +   QFG Y   + T+  L+E      +     +VL  M  +  V    I  +  +A
Sbjct: 50  QIFKSRPQFGSYKLGDATFYRLIENYATSREFHFIHQVLDRMKREGRVLTETIFILIFKA 109

Query: 254 LCLIKNPTELLNVLVFMLQT-QCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG--KF 310
                 P E +N    M     C+  V + N+V+N   + G    A K    +     K 
Sbjct: 110 CGKAHLPGEAVNFFHRMANDLHCKQTVKSFNSVLNVIIQEGDFSYAFKFYLHVFGANSKG 169

Query: 311 CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEA 370
             P+ +T+  II  L  +G+I  A++  ++ MP +  +P + TY+ ++ GL + RRV+EA
Sbjct: 170 FQPNLLTYNLIIKALCKLGQIDRAVDT-FREMPLKNCNPDVFTYSTLMNGLCKERRVDEA 228

Query: 371 KEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKG 430
             + + M   G + +  T+ ++ID L ++  L  A +  D++     + +   Y  +I G
Sbjct: 229 VFLLDEMQAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHG 288

Query: 431 LCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG 486
           LC  GK+ +A+  L ++V S   PN V Y  +I+G  K     +   IL  M + G
Sbjct: 289 LCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERG 344


>gi|359483659|ref|XP_002274224.2| PREDICTED: pentatricopeptide repeat-containing protein At2g17525,
           mitochondrial-like [Vitis vinifera]
          Length = 686

 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 141/526 (26%), Positives = 235/526 (44%), Gaps = 59/526 (11%)

Query: 25  HVPNVV----SYTTLIHGYCRTGEMDVAYKVFDEM-RHCGVLPNSLTYSVLVRGVLRTRD 79
           ++PN +    +Y  LIH  C     +   +V DEM    G  P+   +  +VRG+ R R 
Sbjct: 119 NLPNFIHNQSTYRALIHKLCSFRRFETVKEVLDEMPSSIGSPPDESIFVTIVRGLGRARM 178

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVD---SLCREGYVNEVFRIAEDMPQGKSV 136
           V R  + +  L  +  E   L + N+    LV     L RE Y  ++      M  G S 
Sbjct: 179 V-RQMIKVLDLITKFGENPSLKIFNSILDVLVKEDIDLAREFYRKKM------MMNGVS- 230

Query: 137 NEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQL 196
            +++  G ++  LC + R   A +++ VM+ RG TP+ V YN+++H LCK+G   RA  L
Sbjct: 231 GDDYTFGILMKGLCLTNRIGDAFKLLQVMKSRGKTPNTVIYNTMIHALCKNGKVGRARSL 290

Query: 197 LEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCL 256
           + E ++    PS+ T+ VL+   C E +L +A  +L+   S   V         +  LC 
Sbjct: 291 MNEMVE----PSDVTFNVLISAYCQEENLVQALVLLEKSFSMGFVPDVVTATKVVGILCK 346

Query: 257 IKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA- 315
               TE + VL  +       DV+  NT+I GFC +G+ +   +VL DM   K C P+  
Sbjct: 347 AGRVTEGVEVLERVESMGGVVDVVAYNTLIKGFCMLGKAKVGHRVLKDMEI-KGCLPNVD 405

Query: 316 ----------------------------------VTFTTIIFGLLNVGRIQEALNLLYQV 341
                                             +T+ T+I GL + GR+++   +L  +
Sbjct: 406 TYNILASGYCDSGMLDSAIDLFNDMKTDGINWNFMTYDTLIRGLCSGGRMEDGFKILELM 465

Query: 342 MPQRGYSPG-IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN 400
              RG + G I  YN+++ GL++  + EEA E    M  +     +   ++ I G C   
Sbjct: 466 EESRGGAGGRISPYNSIIYGLYKKNQFEEALEFLTKMEKL--FPRAVDRSLRILGFCNEG 523

Query: 401 QLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYN 460
            + +AKR +D ++    +    VY  +I G C+ G + EA   + E+VD G  P    +N
Sbjct: 524 SIGDAKRVYDQMIKEGGVPSVLVYVCLIHGFCQDGNVREAFELINEMVDHGYFPTAPTFN 583

Query: 461 VVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
            +I   C       A +++ +M   G  PD  ++  +     N+G+
Sbjct: 584 ALISAFCGQGKVGSALKLMEDMVGRGCLPDMGSYSPMVDALCNKGD 629



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 123/467 (26%), Positives = 202/467 (43%), Gaps = 54/467 (11%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M  LC  +R+G+A KL   MKSRG  PN V Y T+IH  C+ G++  A  + +EM    V
Sbjct: 240 MKGLCLTNRIGDAFKLLQVMKSRGKTPNTVIYNTMIHALCKNGKVGRARSLMNEM----V 295

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +T++VL+    +  ++ +A VL+ K +  M    D+         +V  LC+ G V
Sbjct: 296 EPSDVTFNVLISAYCQEENLVQALVLLEKSFS-MGFVPDV----VTATKVVGILCKAGRV 350

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E   + E +     V +  A   +I   C  G+     RV+  M  +G  P++ +YN +
Sbjct: 351 TEGVEVLERVESMGGVVDVVAYNTLIKGFCMLGKAKVGHRVLKDMEIKGCLPNVDTYNIL 410

Query: 181 VHGLCKHGGCMRAYQLLE----EGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFML 236
             G C  G    A  L      +GI + ++    TY  L+ GLC    +E   K+L+ M 
Sbjct: 411 ASGYCDSGMLDSAIDLFNDMKTDGINWNFM----TYDTLIRGLCSGGRMEDGFKILELME 466

Query: 237 SKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIE 296
             +     RI                                    N++I G  K  + E
Sbjct: 467 ESRGGAGGRIS---------------------------------PYNSIIYGLYKKNQFE 493

Query: 297 EALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
           EAL+ L  M   +   P AV  +  I G  N G I +A   +Y  M + G  P ++ Y  
Sbjct: 494 EALEFLTKM---EKLFPRAVDRSLRILGFCNEGSIGDA-KRVYDQMIKEGGVPSVLVYVC 549

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416
           ++ G  +   V EA E+ N M+  G    + T+  +I   C   ++  A +  +D+V   
Sbjct: 550 LIHGFCQDGNVREAFELINEMVDHGYFPTAPTFNALISAFCGQGKVGSALKLMEDMVGRG 609

Query: 417 NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463
            + D   Y+ M+  LC  G   +AV    ++V+  + P+   +N ++
Sbjct: 610 CLPDMGSYSPMVDALCNKGDFQKAVRLFLQMVEKDILPDYSTWNSML 656



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 89/381 (23%), Positives = 159/381 (41%), Gaps = 45/381 (11%)

Query: 155 NHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQF-GYLPSEHTYK 213
           N G S VV +  K   T  + ++  I H + +     +A Q          ++ ++ TY+
Sbjct: 72  NIGRSSVVNLQSKPISTTPVPTHQHIAHLILEQKSASQALQTFRWASNLPNFIHNQSTYR 131

Query: 214 VLVEGLCGESDLEKARKVLQFMLSK--------------KDVDRTRICNIYLRALCLI-- 257
            L+  LC     E  ++VL  M S               + + R R+    ++ L LI  
Sbjct: 132 ALIHKLCSFRRFETVKEVLDEMPSSIGSPPDESIFVTIVRGLGRARMVRQMIKVLDLITK 191

Query: 258 --KNPT-----ELLNVLVF-------------MLQTQCQPDVITLNTVINGFCKMGRIEE 297
             +NP+      +L+VLV              M+      D  T   ++ G C   RI +
Sbjct: 192 FGENPSLKIFNSILDVLVKEDIDLAREFYRKKMMMNGVSGDDYTFGILMKGLCLTNRIGD 251

Query: 298 ALKVLNDMVA-GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
           A K+L  M + GK   P+ V + T+I  L   G++  A +L+ +++      P  VT+N 
Sbjct: 252 AFKLLQVMKSRGK--TPNTVIYNTMIHALCKNGKVGRARSLMNEMV-----EPSDVTFNV 304

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416
           ++    +   + +A  +      +G V D  T   V+  LC++ ++ E     + +    
Sbjct: 305 LISAYCQEENLVQALVLLEKSFSMGFVPDVVTATKVVGILCKAGRVTEGVEVLERVESMG 364

Query: 417 NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAY 476
            + D   Y  +IKG C  GK       L ++   G  PN+  YN++  G C   M   A 
Sbjct: 365 GVVDVVAYNTLIKGFCMLGKAKVGHRVLKDMEIKGCLPNVDTYNILASGYCDSGMLDSAI 424

Query: 477 QILREMRKNGLNPDAVTWRIL 497
            +  +M+ +G+N + +T+  L
Sbjct: 425 DLFNDMKTDGINWNFMTYDTL 445



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 64/285 (22%), Positives = 113/285 (39%), Gaps = 65/285 (22%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C L +    H++  DM+ +G +PNV +Y  L  GYC +G +D A  +F++M+  G+  N
Sbjct: 379 FCMLGKAKVGHRVLKDMEIKGCLPNVDTYNILASGYCDSGMLDSAIDLFNDMKTDGINWN 438

Query: 64  SLTYSVLVRGVL---RTRD------------------VERANVLMFKLWERMKEEE---- 98
            +TY  L+RG+    R  D                  +   N +++ L+++ + EE    
Sbjct: 439 FMTYDTLIRGLCSGGRMEDGFKILELMEESRGGAGGRISPYNSIIYGLYKKNQFEEALEF 498

Query: 99  ------------DLSVNNAAFAN----------------------------LVDSLCREG 118
                       D S+    F N                            L+   C++G
Sbjct: 499 LTKMEKLFPRAVDRSLRILGFCNEGSIGDAKRVYDQMIKEGGVPSVLVYVCLIHGFCQDG 558

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
            V E F +  +M              +I + C  G+   A +++  M  RG  P + SY+
Sbjct: 559 NVREAFELINEMVDHGYFPTAPTFNALISAFCGQGKVGSALKLMEDMVGRGCLPDMGSYS 618

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGES 223
            +V  LC  G   +A +L  + ++   LP   T+  ++  L  E+
Sbjct: 619 PMVDALCNKGDFQKAVRLFLQMVEKDILPDYSTWNSMLLCLTQET 663


>gi|357491947|ref|XP_003616261.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355517596|gb|AES99219.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 109/398 (27%), Positives = 203/398 (51%), Gaps = 42/398 (10%)

Query: 11  GEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVL 70
           G   + + ++   G+ PNV  +  L+HG+C+ G++  A  VFDE+   G+ P+ ++++ L
Sbjct: 208 GHCWEFYLEVLDYGYPPNVYLFNILMHGFCKIGDVMNARMVFDEISRRGLRPSVVSFNTL 267

Query: 71  VRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDM 130
           + G  R+++VE   VL     + + E E +S +   ++ L++ LC+E  V E   + ++M
Sbjct: 268 ISGYCRSKNVEEGFVL-----KSVMESERISPDVFTYSALINGLCKESRVEEANGLFDEM 322

Query: 131 PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGC 190
            +   V        +ID  C+ G+   A R   +M+ RG+ P L++YN++++GLC+ G  
Sbjct: 323 CEMGLVPNGVTFTTLIDGQCKHGKIDLALRNFEIMKDRGIRPDLITYNALINGLCRDGDL 382

Query: 191 MRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIY 250
             A +LL E I  G+ P + T+  L++G C + D++ A ++          DR       
Sbjct: 383 KEARKLLNEMIGNGFKPDKITFTTLMDGCCKDGDMDSALEI---------KDR------- 426

Query: 251 LRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKF 310
                              M++   + D +    +I+G C+ GR+ +A ++L DM++   
Sbjct: 427 -------------------MVEEGIELDDVAFTALISGLCRDGRVRDAERMLKDMLSAGH 467

Query: 311 CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEA 370
             PD  T+T +I      G ++    LL + M + G  PG+VTYNA++ G  +  +++ A
Sbjct: 468 -KPDDPTYTMVIDCFCKKGDVKMGAKLLKE-MQRDGRVPGVVTYNALMNGFCKQGQMKNA 525

Query: 371 KEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRF 408
           K + + ML + VV +  T+ I++DG C+     + K F
Sbjct: 526 KMLLHAMLNMEVVPNDITFNILLDGHCKHGSSVDFKIF 563



 Score =  164 bits (416), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 96/305 (31%), Positives = 163/305 (53%), Gaps = 4/305 (1%)

Query: 194 YQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC-NIYLR 252
           ++   E + +GY P+ + + +L+ G C   D+  AR V    +S++ +  + +  N  + 
Sbjct: 211 WEFYLEVLDYGYPPNVYLFNILMHGFCKIGDVMNARMVFD-EISRRGLRPSVVSFNTLIS 269

Query: 253 ALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCA 312
             C  KN  E   +   M   +  PDV T + +ING CK  R+EEA  + ++M       
Sbjct: 270 GYCRSKNVEEGFVLKSVMESERISPDVFTYSALINGLCKESRVEEANGLFDEMCEMGL-V 328

Query: 313 PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKE 372
           P+ VTFTT+I G    G+I  AL   +++M  RG  P ++TYNA++ GL R   ++EA++
Sbjct: 329 PNGVTFTTLIDGQCKHGKIDLALRN-FEIMKDRGIRPDLITYNALINGLCRDGDLKEARK 387

Query: 373 VFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLC 432
           + N M+G G   D  T+  ++DG C+   +D A    D +V      D+  + A+I GLC
Sbjct: 388 LLNEMIGNGFKPDKITFTTLMDGCCKDGDMDSALEIKDRMVEEGIELDDVAFTALISGLC 447

Query: 433 RSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAV 492
           R G++ +A   L +++ +G  P+   Y +VID  CK    +   ++L+EM+++G  P  V
Sbjct: 448 RDGRVRDAERMLKDMLSAGHKPDDPTYTMVIDCFCKKGDVKMGAKLLKEMQRDGRVPGVV 507

Query: 493 TWRIL 497
           T+  L
Sbjct: 508 TYNAL 512



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/255 (30%), Positives = 133/255 (52%), Gaps = 5/255 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC  SRV EA+ LF +M   G VPN V++TTLI G C+ G++D+A + F+ M+  G+
Sbjct: 303 INGLCKESRVEEANGLFDEMCEMGLVPNGVTFTTLIDGQCKHGKIDLALRNFEIMKDRGI 362

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TY+ L+ G+ R  D++ A  L+ ++     + + ++     F  L+D  C++G +
Sbjct: 363 RPDLITYNALINGLCRDGDLKEARKLLNEMIGNGFKPDKIT-----FTTLMDGCCKDGDM 417

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +    I + M +     ++ A   +I  LCR GR   A R++  M   G  P   +Y  +
Sbjct: 418 DSALEIKDRMVEEGIELDDVAFTALISGLCRDGRVRDAERMLKDMLSAGHKPDDPTYTMV 477

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +   CK G      +LL+E  + G +P   TY  L+ G C +  ++ A+ +L  ML+ + 
Sbjct: 478 IDCFCKKGDVKMGAKLLKEMQRDGRVPGVVTYNALMNGFCKQGQMKNAKMLLHAMLNMEV 537

Query: 241 VDRTRICNIYLRALC 255
           V      NI L   C
Sbjct: 538 VPNDITFNILLDGHC 552



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 88/294 (29%), Positives = 145/294 (49%), Gaps = 8/294 (2%)

Query: 210 HTYKVLVEG--LCGESDLEKARKVLQFM-LSKKDVDRTRICNI-YL--RALCLIKNPTEL 263
           H + VLV    +   +D E     +Q + L KK+     +C   YL  R + L + P   
Sbjct: 151 HNHSVLVFDALIIAYTDSEFIEDAIQCLRLVKKNNFSIPVCGCDYLLRRVMKLNQQPGHC 210

Query: 264 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF 323
               + +L     P+V   N +++GFCK+G +  A  V  D ++ +   P  V+F T+I 
Sbjct: 211 WEFYLEVLDYGYPPNVYLFNILMHGFCKIGDVMNARMVF-DEISRRGLRPSVVSFNTLIS 269

Query: 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 383
           G      ++E   +L  VM     SP + TY+A++ GL +  RVEEA  +F+ M  +G+V
Sbjct: 270 GYCRSKNVEEGF-VLKSVMESERISPDVFTYSALINGLCKESRVEEANGLFDEMCEMGLV 328

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
            +  T+  +IDG C+  ++D A R ++ +       D   Y A+I GLCR G + EA   
Sbjct: 329 PNGVTFTTLIDGQCKHGKIDLALRNFEIMKDRGIRPDLITYNALINGLCRDGDLKEARKL 388

Query: 444 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           L E++ +G  P+ + +  ++DG CK      A +I   M + G+  D V +  L
Sbjct: 389 LNEMIGNGFKPDKITFTTLMDGCCKDGDMDSALEIKDRMVEEGIELDDVAFTAL 442


>gi|297733951|emb|CBI15198.3| unnamed protein product [Vitis vinifera]
          Length = 948

 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 110/387 (28%), Positives = 187/387 (48%), Gaps = 7/387 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D L    R     K++ DM +RG  PNVV+Y TLI G CR G+   A+++FDEM    +
Sbjct: 165 LDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKI 224

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P  + Y++L+RG+     +  A  +      R      +  N   +  ++D  C+  +V
Sbjct: 225 FPTVVIYTILIRGLCGESRISEAESMF-----RTMRNSGMLPNLYTYNTMMDGYCKIAHV 279

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +   + ++M     +      G +ID LC++     A + +  M   G+ P++  YN +
Sbjct: 280 KKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCL 339

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G CK G    A  L  E  +   LP   TY +L++GLCG   +E+A  +LQ M  K  
Sbjct: 340 IDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGF 399

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           +      N  +   C   N  + + V   M +   +P++IT +T+I+G+CK G++E A+ 
Sbjct: 400 LPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMG 459

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +  +MV  K   PD V +T +I G    G  +EA   L++ M + G  P + T + ++ G
Sbjct: 460 LYTEMVI-KGLLPDVVAYTALIDGHFKDGNTKEAFR-LHKEMQEAGLHPNVFTLSCLIDG 517

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADST 387
           L +  R+ +A ++F    G       T
Sbjct: 518 LCKDGRISDAIKLFLAKTGTDTTGSKT 544



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 118/466 (25%), Positives = 223/466 (47%), Gaps = 10/466 (2%)

Query: 35  LIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS---VLVRGVLRTRDVERANVLMFKLW 91
           L H   R  ++    +++  + H  VL  +  Y+    L+R +++     R + +   ++
Sbjct: 56  LFHSVSRRADLAKNPQLYSAIIH--VLTGAKLYAKARCLMRDLIQCLQNSRRSRICCSVF 113

Query: 92  ERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCR 151
             +   E        F  L+ +    G V E   +   M    ++    AC  ++D L +
Sbjct: 114 NVLSRLESSKFTPNVFGVLIIAFSEMGLVEEALWVYYKMDVLPAMQ---ACNMVLDGLVK 170

Query: 152 SGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHT 211
            GR     +V   M  RG +P++V+Y +++ G C+ G  ++A++L +E I+    P+   
Sbjct: 171 KGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVI 230

Query: 212 YKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFML 271
           Y +L+ GLCGES + +A  + + M +   +      N  +   C I +  + L +   ML
Sbjct: 231 YTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEML 290

Query: 272 QTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRI 331
                P+V+T   +I+G CK   +  A K L DM A     P+   +  +I G    G +
Sbjct: 291 GDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDM-ASFGVVPNIFVYNCLIDGYCKAGNL 349

Query: 332 QEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAI 391
            EAL+ L+  + +    P + TY+ +++GL  + R+EEA  +   M   G + ++ TY  
Sbjct: 350 SEALS-LHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNT 408

Query: 392 VIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 451
           +IDG C+   +++A      +       +   ++ +I G C++GK+  A+    E+V  G
Sbjct: 409 LIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKG 468

Query: 452 VTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           + P++V Y  +IDG  K    +EA+++ +EM++ GL+P+  T   L
Sbjct: 469 LLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCL 514



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 123/449 (27%), Positives = 214/449 (47%), Gaps = 47/449 (10%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           ++S    PNV  +  LI  +   G ++ A  V+ +M    VLP     ++++ G+++   
Sbjct: 119 LESSKFTPNV--FGVLIIAFSEMGLVEEALWVYYKM---DVLPAMQACNMVLDGLVKKGR 173

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
            +     M+K++  M      S N   +  L+D  CR+G   + FR+ ++M + K     
Sbjct: 174 FDT----MWKVYGDMVAR-GASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTV 228

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
                +I  LC   R   A  +   MR  G+ P+L +YN+++ G CK     +A +L +E
Sbjct: 229 VIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQE 288

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
            +  G LP+  T+ +L++GLC   ++  ARK L  M S   V                  
Sbjct: 289 MLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVV------------------ 330

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
                            P++   N +I+G+CK G + EAL  L+  +      PD  T++
Sbjct: 331 -----------------PNIFVYNCLIDGYCKAGNLSEALS-LHSEIEKHEILPDVFTYS 372

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
            +I GL  V R++EA  LL Q M ++G+ P  VTYN ++ G  +   +E+A EV + M  
Sbjct: 373 ILIKGLCGVDRMEEADGLL-QEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTE 431

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
            G+  +  T++ +IDG C++ +++ A   + ++V    + D   Y A+I G  + G   E
Sbjct: 432 KGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKE 491

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACK 468
           A     E+ ++G+ PN+   + +IDG CK
Sbjct: 492 AFRLHKEMQEAGLHPNVFTLSCLIDGLCK 520



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 79/262 (30%), Positives = 144/262 (54%), Gaps = 2/262 (0%)

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
           + CN+ L  L        +  V   M+     P+V+T  T+I+G C+ G   +A ++ ++
Sbjct: 159 QACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDE 218

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
           M+  K   P  V +T +I GL    RI EA ++ ++ M   G  P + TYN ++ G  ++
Sbjct: 219 MIEKKI-FPTVVIYTILIRGLCGESRISEAESM-FRTMRNSGMLPNLYTYNTMMDGYCKI 276

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY 424
             V++A E++  MLG G++ +  T+ I+IDGLC+++++  A++F  D+     + + +VY
Sbjct: 277 AHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVY 336

Query: 425 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484
             +I G C++G + EA+    E+    + P++  Y+++I G C +    EA  +L+EM+K
Sbjct: 337 NCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKK 396

Query: 485 NGLNPDAVTWRILDKLHGNRGN 506
            G  P+AVT+  L   +   GN
Sbjct: 397 KGFLPNAVTYNTLIDGYCKEGN 418



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 116/517 (22%), Positives = 220/517 (42%), Gaps = 47/517 (9%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LCG+ R+ EA  L  +MK +G +PN V+Y TLI GYC+ G M+ A +V  +M   G+ PN
Sbjct: 378 LCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPN 437

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +T+S L+ G  +   +E A  L  ++  +      L  +  A+  L+D   ++G   E 
Sbjct: 438 IITFSTLIDGYCKAGKMEAAMGLYTEMVIK-----GLLPDVVAYTALIDGHFKDGNTKEA 492

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVS------Y 177
           FR+ ++M +       F    +ID LC+ GR   A ++         T S  +      Y
Sbjct: 493 FRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTDTTGSKTNELDRSLY 552

Query: 178 N------SIVHGLCKHGGC-MRAYQLLEEGIQFGYLPSEHTYKVL--------VEGLCGE 222
                  S+  G+ +   C +R  +L     Q    P  H +  L        ++     
Sbjct: 553 QMCSLALSLFRGISEPCICVIRVTKLFATNNQ----PKAHLHTHLKPPKSNQTLKRYLQS 608

Query: 223 SDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNP-TELLNVLVFMLQTQCQPDVIT 281
           S+  K     + +L K          ++    C +K+   E   +   ++    +P +  
Sbjct: 609 SNTSKVLLFFRILLRKNPSSIDSFSLMFALKACTLKSSLVEGKQMHALVINFGFEPIIFL 668

Query: 282 LNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQV 341
             ++I+ +   G + +A  + +++ +        +++T++I   ++  R  +AL L  Q 
Sbjct: 669 QTSLISMYSATGNVADAHNMFDEIPSKNL-----ISWTSVISAYVDNQRPNKALQLFRQ- 722

Query: 342 MPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ 401
           M      P IVT    L     L  ++  + +   +   G+  D      +I+   +  +
Sbjct: 723 MQMDDVQPDIVTVTVALSACADLGALDMGEWIHAYIRHRGLDTDLCLNNSLINMYSKCGE 782

Query: 402 LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEA-VHFLYELVDSGVTPNIVCYN 460
           +  A+RF   +V P+++     +  ++     +G + E   HF     D  + P I  + 
Sbjct: 783 IGTARRF--SLVLPNDV----TFMGVLMACSHAGLVEEGKQHFRSMKEDYSLRPRISHFG 836

Query: 461 VVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            ++D  C+  +  EAY+ + +M    + P+AV WR L
Sbjct: 837 CMVDLLCRAGLLTEAYEFILKM---PVRPNAVVWRTL 870


>gi|302784708|ref|XP_002974126.1| hypothetical protein SELMODRAFT_100773 [Selaginella moellendorffii]
 gi|300158458|gb|EFJ25081.1| hypothetical protein SELMODRAFT_100773 [Selaginella moellendorffii]
          Length = 538

 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 129/489 (26%), Positives = 231/489 (47%), Gaps = 47/489 (9%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LCG     +A +L  ++ S  + P V  Y  +I G CR   +  AYKV ++M    +
Sbjct: 61  VDGLCGAGMANQALELVREL-SGVYTPTVFIYNGIITGLCRASRVMDAYKVLEKMVEESI 119

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +PN  TY++L+ G+ R+   + A     ++++ MK       N   +  L+  L R G +
Sbjct: 120 VPNVFTYTILLNGLCRSNKTKLAR----EVFQEMK-RNGCKPNPITYGTLIQHLSRAGEI 174

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E  R+  +    +   +   C  ++  LC++ R   A + +  MR+ G+ P+ V+Y+++
Sbjct: 175 DEALRVMIEQRSLELPTDVITCTTIVGGLCKASRLDDALKFMEEMRQMGVRPNEVTYSNL 234

Query: 181 VHGLCKHGGCMRAYQLL-EEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           VHG  +HG   R  +   EE  + G       Y   ++ LC    L++ARK ++      
Sbjct: 235 VHGFRQHGELDRVIRFFEEEKARKGGSLEAAAYPGYLDALCKAGYLDRARKSVE------ 288

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                                         + Q+   PDV+T + +IN F + G+ + +L
Sbjct: 289 -----------------------------ELRQSGVVPDVVTYSMLINTFARAGQFDASL 319

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           ++L DM       PD VT++T+I  L    + Q+A  LL ++M   G  P +VTYN+V+ 
Sbjct: 320 ELLEDMRRNGV-KPDVVTYSTLINVLCKERKFQDAFRLL-ELMEAAGSPPNVVTYNSVMD 377

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
           GL +  +++E   V+  ML      D  TY+I+++GL ++  LD A + ++ I       
Sbjct: 378 GLCKSGKMDEVHRVYEMMLKSRCSPDVVTYSIIMNGLSKAGMLDSAVKLFELIKSSREGP 437

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNV--VIDGACKLSMKREAYQ 477
           D   Y+ +I  LCR+GK+ EA   +Y  ++  V  + +C  +  ++   C       A +
Sbjct: 438 DAAAYSMVITSLCRAGKLEEACG-MYHGMEVTVAGDNICRALAGLVAALCDAKRTDSARR 496

Query: 478 ILREMRKNG 486
           I+   R+ G
Sbjct: 497 IVEVARERG 505



 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 113/410 (27%), Positives = 192/410 (46%), Gaps = 4/410 (0%)

Query: 89  KLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDS 148
           KL ER   E    V++ AF  L   L R    +EV R+   +     V  E     ++D 
Sbjct: 4   KLLERSVVEAGAKVDSQAFTLLATKLFRRSKFSEVVRLFTLLASRGVVYGETTYKLVVDG 63

Query: 149 LCRSGRNHGASRVVYVMRKRGL-TPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLP 207
           LC +G  + A  +V  +   G+ TP++  YN I+ GLC+    M AY++LE+ ++   +P
Sbjct: 64  LCGAGMANQALELVRELS--GVYTPTVFIYNGIITGLCRASRVMDAYKVLEKMVEESIVP 121

Query: 208 SEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVL 267
           +  TY +L+ GLC  +  + AR+V Q M               ++ L       E L V+
Sbjct: 122 NVFTYTILLNGLCRSNKTKLAREVFQEMKRNGCKPNPITYGTLIQHLSRAGEIDEALRVM 181

Query: 268 VFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLN 327
           +     +   DVIT  T++ G CK  R+++ALK + +M       P+ VT++ ++ G   
Sbjct: 182 IEQRSLELPTDVITCTTIVGGLCKASRLDDALKFMEEM-RQMGVRPNEVTYSNLVHGFRQ 240

Query: 328 VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADST 387
            G +   +    +   ++G S     Y   L  L +   ++ A++    +   GVV D  
Sbjct: 241 HGELDRVIRFFEEEKARKGGSLEAAAYPGYLDALCKAGYLDRARKSVEELRQSGVVPDVV 300

Query: 388 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYEL 447
           TY+++I+    + Q D +    +D+       D   Y+ +I  LC+  K  +A   L  +
Sbjct: 301 TYSMLINTFARAGQFDASLELLEDMRRNGVKPDVVTYSTLINVLCKERKFQDAFRLLELM 360

Query: 448 VDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
             +G  PN+V YN V+DG CK     E +++   M K+  +PD VT+ I+
Sbjct: 361 EAAGSPPNVVTYNSVMDGLCKSGKMDEVHRVYEMMLKSRCSPDVVTYSII 410



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 119/470 (25%), Positives = 206/470 (43%), Gaps = 46/470 (9%)

Query: 8   SRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV-LPNSLT 66
           S+  E  +LF  + SRG V    +Y  ++ G C  G  + A ++  E+   GV  P    
Sbjct: 33  SKFSEVVRLFTLLASRGVVYGETTYKLVVDGLCGAGMANQALELVREL--SGVYTPTVFI 90

Query: 67  YSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRI 126
           Y+ ++ G+ R   V  A    +K+ E+M EE  +  N   +  L++ LCR         +
Sbjct: 91  YNGIITGLCRASRVMDA----YKVLEKMVEE-SIVPNVFTYTILLNGLCRSNKTKLAREV 145

Query: 127 AEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK 186
            ++M +          G +I  L R+G    A RV+   R   L   +++  +IV GLCK
Sbjct: 146 FQEMKRNGCKPNPITYGTLIQHLSRAGEIDEALRVMIEQRSLELPTDVITCTTIVGGLCK 205

Query: 187 HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRI 246
                 A + +EE  Q G  P+E TY  LV G     +L++  +  +   ++K       
Sbjct: 206 ASRLDDALKFMEEMRQMGVRPNEVTYSNLVHGFRQHGELDRVIRFFEEEKARKGGS---- 261

Query: 247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV 306
                                   L+    P  +      +  CK G ++ A K + ++ 
Sbjct: 262 ------------------------LEAAAYPGYL------DALCKAGYLDRARKSVEELR 291

Query: 307 AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 366
                 PD VT++ +I      G+   +L LL + M + G  P +VTY+ ++  L + R+
Sbjct: 292 QSGV-VPDVVTYSMLINTFARAGQFDASLELL-EDMRRNGVKPDVVTYSTLINVLCKERK 349

Query: 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAA 426
            ++A  +   M   G   +  TY  V+DGLC+S ++DE  R ++ ++      D   Y+ 
Sbjct: 350 FQDAFRLLELMEAAGSPPNVVTYNSVMDGLCKSGKMDEVHRVYEMMLKSRCSPDVVTYSI 409

Query: 427 MIKGLCRSGKIHEAVHFLYELVDSGVT-PNIVCYNVVIDGACKLSMKREA 475
           ++ GL ++G +  AV  L+EL+ S    P+   Y++VI   C+     EA
Sbjct: 410 IMNGLSKAGMLDSAVK-LFELIKSSREGPDAAAYSMVITSLCRAGKLEEA 458



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 93/183 (50%), Gaps = 8/183 (4%)

Query: 334 ALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVI 393
           A  LL + + + G       +  +   LFR  +  E   +F  +   GVV   TTY +V+
Sbjct: 2   AAKLLERSVVEAGAKVDSQAFTLLATKLFRRSKFSEVVRLFTLLASRGVVYGETTYKLVV 61

Query: 394 DGLCES---NQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 450
           DGLC +   NQ  E  R    +  P+     ++Y  +I GLCR+ ++ +A   L ++V+ 
Sbjct: 62  DGLCGAGMANQALELVRELSGVYTPTV----FIYNGIITGLCRASRVMDAYKVLEKMVEE 117

Query: 451 GVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN-DFG 509
            + PN+  Y ++++G C+ +  + A ++ +EM++NG  P+ +T+  L +     G  D  
Sbjct: 118 SIVPNVFTYTILLNGLCRSNKTKLAREVFQEMKRNGCKPNPITYGTLIQHLSRAGEIDEA 177

Query: 510 LRI 512
           LR+
Sbjct: 178 LRV 180


>gi|222615488|gb|EEE51620.1| hypothetical protein OsJ_32898 [Oryza sativa Japonica Group]
          Length = 822

 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 131/481 (27%), Positives = 222/481 (46%), Gaps = 8/481 (1%)

Query: 27  PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVL 86
           P  ++++TL+    R+   D        M   G  P       LV        + +A   
Sbjct: 96  PTPLAHSTLLRLLARSRRFDAVDDTLQSMSLAGAAPTRACLGALVAAYADAGMLGKAT-- 153

Query: 87  MFKLWERMKEEEDLSVNNAAFAN-LVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHM 145
              + ER++E+   S+      N L+  L  +   ++  ++ ++M    S  + ++   +
Sbjct: 154 --DMCERLREQYG-SLPEVTHCNRLLKLLVEQRRWDDARKLYDEMLGEDSGADNYSTCVL 210

Query: 146 IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY 205
           +  LC  GR     +++      G  P +V YN ++ G C+ G   R   LL E    G+
Sbjct: 211 VRGLCLEGRVEEGLKLIEARWGAGCIPHVVFYNVLIDGYCRRGDMGRGLLLLGEMEAKGF 270

Query: 206 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 265
           LP+  TY  L+  L  + DLEK   +   M  +      +I N  + ALC   + T+ + 
Sbjct: 271 LPTLVTYGSLINCLGKKGDLEKIGSLFLEMRKRGLSPNVQIYNSVIDALCKCWSATQAMV 330

Query: 266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 325
           +L  M  + C PD+IT NT+I G C  G + +A   L + +  +   P+ +++T +I G 
Sbjct: 331 ILKQMFASGCDPDIITFNTLITGLCHEGHVRKAEHFLREAIRREL-NPNQLSYTPLIHGF 389

Query: 326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 385
              G +  A +LL ++M  RG++P +VT+ A++ GL    +V EA  V   M    V  D
Sbjct: 390 CMRGELMAASDLLMEMM-GRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPD 448

Query: 386 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY 445
              Y ++I GLC+ + L  AK   ++++  +   D +VYA +I G  RS  + +A     
Sbjct: 449 VNIYNVLISGLCKKHMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSENLGDARKIFE 508

Query: 446 ELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
            +   GV P+IV  N +I G C+  M  EA   +  MRK G  PD  T+  +   +  +G
Sbjct: 509 FMEHKGVRPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKVGCIPDEFTYTTVISGYAKQG 568

Query: 506 N 506
           N
Sbjct: 569 N 569



 Score =  171 bits (434), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 140/549 (25%), Positives = 237/549 (43%), Gaps = 59/549 (10%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   RV E  KL       G +P+VV Y  LI GYCR G+M     +  EM   G LP 
Sbjct: 214 LCLEGRVEEGLKLIEARWGAGCIPHVVFYNVLIDGYCRRGDMGRGLLLLGEMEAKGFLPT 273

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY  L+  + +  D+E+   L  ++ +R      LS N   + +++D+LC+     + 
Sbjct: 274 LVTYGSLINCLGKKGDLEKIGSLFLEMRKR-----GLSPNVQIYNSVIDALCKCWSATQA 328

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             I + M       +      +I  LC  G    A   +    +R L P+ +SY  ++HG
Sbjct: 329 MVILKQMFASGCDPDIITFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSYTPLIHG 388

Query: 184 LCKHGGCMRAYQLLEEG---------IQFGYL--------------------------PS 208
            C  G  M A  LL E          + FG L                          P 
Sbjct: 389 FCMRGELMAASDLLMEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPD 448

Query: 209 EHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLV 268
            + Y VL+ GLC +  L  A+ +L+ ML K       +    +      +N  +   +  
Sbjct: 449 VNIYNVLISGLCKKHMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSENLGDARKIFE 508

Query: 269 FMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNV 328
           FM     +PD+++ N +I G+C+ G + EA+  +++M     C PD  T+TT+I G    
Sbjct: 509 FMEHKGVRPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKVG-CIPDEFTYTTVISGYAKQ 567

Query: 329 GRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTT 388
           G +  AL  L   M +R   P +VTY++++ G  +    + A+ +F  M    +  +  T
Sbjct: 568 GNLNGALRWLCD-MIKRKCKPNVVTYSSLINGYCKTGDTDSAEGLFANMQAEALSPNVVT 626

Query: 389 YAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL------------CRSGK 436
           Y I+I  L + +++  A  +++ ++      ++     ++ GL            C + +
Sbjct: 627 YTILIGSLFKKDKVLRAGLYFETMLLNHCSPNDVTLHYLVNGLTSCTPCVINSICCNTSE 686

Query: 437 IH--EAVHFLY-ELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVT 493
           +H  +A+  ++ +LV     P    YN +I   C+ +M REA      M K G  P+ +T
Sbjct: 687 VHGKDALLVVFKKLVFDIGDPRNSAYNAIIFSLCRHNMLREALDFKNRMAKKGYVPNPIT 746

Query: 494 WRILDKLHG 502
           +  L  L+G
Sbjct: 747 F--LSLLYG 753



 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 124/478 (25%), Positives = 209/478 (43%), Gaps = 25/478 (5%)

Query: 7   LSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLT 66
           L ++G    LF +M+ RG  PNV  Y ++I   C+      A  +  +M   G  P+ +T
Sbjct: 290 LEKIGS---LFLEMRKRGLSPNVQIYNSVIDALCKCWSATQAMVILKQMFASGCDPDIIT 346

Query: 67  YSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRI 126
           ++ L+ G+     V +A   + +   R     +L+ N  ++  L+   C  G +     +
Sbjct: 347 FNTLITGLCHEGHVRKAEHFLREAIRR-----ELNPNQLSYTPLIHGFCMRGELMAASDL 401

Query: 127 AEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK 186
             +M       +    G +I  L  +G+   A  V   M +R + P +  YN ++ GLCK
Sbjct: 402 LMEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCK 461

Query: 187 HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRI 246
                 A  +LEE ++    P E  Y  L++G     +L  ARK+ +FM  K        
Sbjct: 462 KHMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGVRPDIVS 521

Query: 247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV 306
           CN  ++  C     +E +  +  M +  C PD  T  TVI+G+ K G +  AL+ L DM+
Sbjct: 522 CNAMIKGYCQFGMMSEAILCMSNMRKVGCIPDEFTYTTVISGYAKQGNLNGALRWLCDMI 581

Query: 307 AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 366
             K C P+ VT++++I G    G    A  L +  M     SP +VTY  ++  LF+  +
Sbjct: 582 KRK-CKPNVVTYSSLINGYCKTGDTDSAEGL-FANMQAEALSPNVVTYTILIGSLFKKDK 639

Query: 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGL------------CESNQL---DEAKRFWDD 411
           V  A   F  ML      +  T   +++GL            C ++++   D     +  
Sbjct: 640 VLRAGLYFETMLLNHCSPNDVTLHYLVNGLTSCTPCVINSICCNTSEVHGKDALLVVFKK 699

Query: 412 IVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKL 469
           +V+      N  Y A+I  LCR   + EA+ F   +   G  PN + +  ++ G C +
Sbjct: 700 LVFDIGDPRNSAYNAIIFSLCRHNMLREALDFKNRMAKKGYVPNPITFLSLLYGFCSV 757



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 120/490 (24%), Positives = 222/490 (45%), Gaps = 9/490 (1%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           R  +A KL+ +M       +  S   L+ G C  G ++   K+ +     G +P+ + Y+
Sbjct: 184 RWDDARKLYDEMLGEDSGADNYSTCVLVRGLCLEGRVEEGLKLIEARWGAGCIPHVVFYN 243

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
           VL+ G  R  D+ R  +L+ ++     E +        + +L++ L ++G + ++  +  
Sbjct: 244 VLIDGYCRRGDMGRGLLLLGEM-----EAKGFLPTLVTYGSLINCLGKKGDLEKIGSLFL 298

Query: 129 DM-PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKH 187
           +M  +G S N +     +ID+LC+      A  ++  M   G  P ++++N+++ GLC  
Sbjct: 299 EMRKRGLSPNVQIY-NSVIDALCKCWSATQAMVILKQMFASGCDPDIITFNTLITGLCHE 357

Query: 188 GGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC 247
           G   +A   L E I+    P++ +Y  L+ G C   +L  A  +L  M+ +         
Sbjct: 358 GHVRKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGELMAASDLLMEMMGRGHTPDVVTF 417

Query: 248 NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA 307
              +  L +    +E L V   M + Q  PDV   N +I+G CK   +  A  +L +M+ 
Sbjct: 418 GALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCKKHMLPAAKNILEEMLE 477

Query: 308 GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRV 367
            K   PD   + T+I G +    + +A   +++ M  +G  P IV+ NA+++G  +   +
Sbjct: 478 -KNVQPDEFVYATLIDGFIRSENLGDARK-IFEFMEHKGVRPDIVSCNAMIKGYCQFGMM 535

Query: 368 EEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAM 427
            EA    + M  +G + D  TY  VI G  +   L+ A R+  D++      +   Y+++
Sbjct: 536 SEAILCMSNMRKVGCIPDEFTYTTVISGYAKQGNLNGALRWLCDMIKRKCKPNVVTYSSL 595

Query: 428 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
           I G C++G    A      +    ++PN+V Y ++I    K      A      M  N  
Sbjct: 596 INGYCKTGDTDSAEGLFANMQAEALSPNVVTYTILIGSLFKKDKVLRAGLYFETMLLNHC 655

Query: 488 NPDAVTWRIL 497
           +P+ VT   L
Sbjct: 656 SPNDVTLHYL 665



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 119/475 (25%), Positives = 208/475 (43%), Gaps = 9/475 (1%)

Query: 24  GHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERA 83
           G +P V     L+         D A K++DEM       ++ +  VLVRG+     VE  
Sbjct: 164 GSLPEVTHCNRLLKLLVEQRRWDDARKLYDEMLGEDSGADNYSTCVLVRGLCLEGRVEEG 223

Query: 84  NVLMFKLWERMKEEEDLSVNNAAFAN-LVDSLCREGYVNEVFRIAEDMPQGKSVNEEFAC 142
             L+   W          + +  F N L+D  CR G +     +  +M     +      
Sbjct: 224 LKLIEARWGAG------CIPHVVFYNVLIDGYCRRGDMGRGLLLLGEMEAKGFLPTLVTY 277

Query: 143 GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQ 202
           G +I+ L + G       +   MRKRGL+P++  YNS++  LCK     +A  +L++   
Sbjct: 278 GSLINCLGKKGDLEKIGSLFLEMRKRGLSPNVQIYNSVIDALCKCWSATQAMVILKQMFA 337

Query: 203 FGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTE 262
            G  P   T+  L+ GLC E  + KA   L+  + ++           +   C+      
Sbjct: 338 SGCDPDIITFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGELMA 397

Query: 263 LLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTII 322
             ++L+ M+     PDV+T   +I+G    G++ EAL V   M   +   PD   +  +I
Sbjct: 398 ASDLLMEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQV-FPDVNIYNVLI 456

Query: 323 FGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGV 382
            GL     +  A N+L +++ ++   P    Y  ++ G  R   + +A+++F  M   GV
Sbjct: 457 SGLCKKHMLPAAKNILEEML-EKNVQPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGV 515

Query: 383 VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVH 442
             D  +   +I G C+   + EA     ++     I D + Y  +I G  + G ++ A+ 
Sbjct: 516 RPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKVGCIPDEFTYTTVISGYAKQGNLNGALR 575

Query: 443 FLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           +L +++     PN+V Y+ +I+G CK      A  +   M+   L+P+ VT+ IL
Sbjct: 576 WLCDMIKRKCKPNVVTYSSLINGYCKTGDTDSAEGLFANMQAEALSPNVVTYTIL 630



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 88/379 (23%), Positives = 150/379 (39%), Gaps = 60/379 (15%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C    +  A  L  +M  RGH P+VV++  LIHG    G++  A  V ++M    V P+
Sbjct: 389 FCMRGELMAASDLLMEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPD 448

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
              Y+VL+ G+ +   +  A  ++ ++ E+  + ++       +A L+D   R   + + 
Sbjct: 449 VNIYNVLISGLCKKHMLPAAKNILEEMLEKNVQPDEF-----VYATLIDGFIRSENLGDA 503

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            +I E M       +  +C  MI   C+ G    A   +  MRK G  P   +Y +++ G
Sbjct: 504 RKIFEFMEHKGVRPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKVGCIPDEFTYTTVISG 563

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
             K G    A + L + I+    P+  TY  L+ G C   D + A  +   M ++     
Sbjct: 564 YAKQGNLNGALRWLCDMIKRKCKPNVVTYSSLINGYCKTGDTDSAEGLFANMQAEALSPN 623

Query: 244 TRICNIYLRALCLIKNPTELLNVLVF--MLQTQCQPDVITLNTVINGF------------ 289
                I + +L   K    L   L F  ML   C P+ +TL+ ++NG             
Sbjct: 624 VVTYTILIGSL--FKKDKVLRAGLYFETMLLNHCSPNDVTLHYLVNGLTSCTPCVINSIC 681

Query: 290 --------------------------------------CKMGRIEEALKVLNDMVAGKFC 311
                                                 C+   + EAL   N M A K  
Sbjct: 682 CNTSEVHGKDALLVVFKKLVFDIGDPRNSAYNAIIFSLCRHNMLREALDFKNRM-AKKGY 740

Query: 312 APDAVTFTTIIFGLLNVGR 330
            P+ +TF ++++G  +VG+
Sbjct: 741 VPNPITFLSLLYGFCSVGK 759



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 95/225 (42%), Gaps = 35/225 (15%)

Query: 13  AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVR 72
           A +   DM  R   PNVV+Y++LI+GYC+TG+ D A  +F  M+   + PN +TY++L+ 
Sbjct: 573 ALRWLCDMIKRKCKPNVVTYSSLINGYCKTGDTDSAEGLFANMQAEALSPNVVTYTILIG 632

Query: 73  GVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSL--CREGYVNEVFRIAEDM 130
            + +   V RA +     +E M      S N+     LV+ L  C    +N +       
Sbjct: 633 SLFKKDKVLRAGLY----FETMLLNH-CSPNDVTLHYLVNGLTSCTPCVINSI------- 680

Query: 131 PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLT---PSLVSYNSIVHGLCKH 187
                              C +   HG   ++ V +K       P   +YN+I+  LC+H
Sbjct: 681 ------------------CCNTSEVHGKDALLVVFKKLVFDIGDPRNSAYNAIIFSLCRH 722

Query: 188 GGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVL 232
                A        + GY+P+  T+  L+ G C        R +L
Sbjct: 723 NMLREALDFKNRMAKKGYVPNPITFLSLLYGFCSVGKSMNWRTIL 767


>gi|218191262|gb|EEC73689.1| hypothetical protein OsI_08260 [Oryza sativa Indica Group]
          Length = 595

 Score =  178 bits (451), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 139/527 (26%), Positives = 237/527 (44%), Gaps = 66/527 (12%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           MD LC   R+ EA KL  +   +G  P+V  Y+ LI  YC+ G +  A   ++ M   G+
Sbjct: 7   MDGLCKEMRLDEAEKLLENKARQGSNPDVYGYSYLIQSYCKMGNLIKAVDHYEAMVSHGI 66

Query: 61  LPNSLTYSVLV---RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCRE 117
             N    S L+   R +  T +V  A  L FK       +  L ++   +   +D+ C+ 
Sbjct: 67  ETNCHIVSYLLQCFRKLGMTSEV-IAYFLKFK-------DSGLHLDKVIYNIAMDTYCKN 118

Query: 118 GYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
           G +NE  ++  +M  G    ++     +I+  C  G    A +V   M K  + P +V+Y
Sbjct: 119 GNMNEAVKLLNEMKCGGLTPDKIHYTCLINGYCLKGEMQNAQQVFEEMLKANIEPDIVTY 178

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
           N +  G CK G  M  + LL+     G  P+  TY + + G C   +L +A +VL  ++ 
Sbjct: 179 NILASGFCKSGLVMEVFDLLDRMADQGLEPNSLTYGIAIVGFCRGGNLSEA-EVLFNVVE 237

Query: 238 KKDVDRTRI------------------------------------CNIYLRALCLIKNPT 261
           +K +D   +                                    C+  +  LC + N  
Sbjct: 238 EKGIDHIEVMYSSMVCGYLLSGWTDHAYMLFVRVARQGNLVDHFSCSKLINDLCRVGNVQ 297

Query: 262 ELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTI 321
              NV   ML+    PDVI+ + +I+ +C+ G +++A    +DMV  +  + D + +T +
Sbjct: 298 GASNVCKIMLEHNVVPDVISYSKLISIYCQNGDMDKAHLWFHDMVQ-RGLSIDVIVYTIL 356

Query: 322 IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR--LRRVEE--AKE----- 372
           + G    GR+QEA  L  Q M   G  P ++ Y  +L G  +  L++  E  AKE     
Sbjct: 357 MNGYCKAGRLQEACQLFVQ-MTNLGIKPDVIAYTVLLDGHLKETLQQGWEGIAKERRSFL 415

Query: 373 -------VFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYA 425
                  + + M  + +  D   Y ++IDG C++  L EA+  +D+++      D Y Y 
Sbjct: 416 LRANHNKLLSSMKDMQIEPDVPCYTVLIDGKCKAEYLVEARELFDEMLQKGLTPDAYAYT 475

Query: 426 AMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMK 472
           A+I G C  G+I +A   L E++D G+ P+ + ++ V     +LS+K
Sbjct: 476 ALINGYCSQGEISKAEDLLQEMIDKGIEPDELTFSEVNIADEELSVK 522



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 101/413 (24%), Positives = 188/413 (45%), Gaps = 37/413 (8%)

Query: 106 AFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGR----------- 154
           A+  ++D LC+E  ++E  ++ E+  +  S  + +   ++I S C+ G            
Sbjct: 2   AYNMVMDGLCKEMRLDEAEKLLENKARQGSNPDVYGYSYLIQSYCKMGNLIKAVDHYEAM 61

Query: 155 -NHG-------ASRVVYVMRKRGLTPSLVSY----------------NSIVHGLCKHGGC 190
            +HG        S ++   RK G+T  +++Y                N  +   CK+G  
Sbjct: 62  VSHGIETNCHIVSYLLQCFRKLGMTSEVIAYFLKFKDSGLHLDKVIYNIAMDTYCKNGNM 121

Query: 191 MRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIY 250
             A +LL E    G  P +  Y  L+ G C + +++ A++V + ML           NI 
Sbjct: 122 NEAVKLLNEMKCGGLTPDKIHYTCLINGYCLKGEMQNAQQVFEEMLKANIEPDIVTYNIL 181

Query: 251 LRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKF 310
               C      E+ ++L  M     +P+ +T    I GFC+ G + EA +VL ++V  K 
Sbjct: 182 ASGFCKSGLVMEVFDLLDRMADQGLEPNSLTYGIAIVGFCRGGNLSEA-EVLFNVVEEKG 240

Query: 311 CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEA 370
                V +++++ G L  G    A  L  +V  Q G      + + ++  L R+  V+ A
Sbjct: 241 IDHIEVMYSSMVCGYLLSGWTDHAYMLFVRVARQ-GNLVDHFSCSKLINDLCRVGNVQGA 299

Query: 371 KEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKG 430
             V   ML   VV D  +Y+ +I   C++  +D+A  ++ D+V      D  VY  ++ G
Sbjct: 300 SNVCKIMLEHNVVPDVISYSKLISIYCQNGDMDKAHLWFHDMVQRGLSIDVIVYTILMNG 359

Query: 431 LCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
            C++G++ EA     ++ + G+ P+++ Y V++DG  K ++++    I +E R
Sbjct: 360 YCKAGRLQEACQLFVQMTNLGIKPDVIAYTVLLDGHLKETLQQGWEGIAKERR 412



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 87/357 (24%), Positives = 161/357 (45%), Gaps = 10/357 (2%)

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
           ++D LC+  R   A +++    ++G  P +  Y+ ++   CK G  ++A    E  +  G
Sbjct: 6   VMDGLCKEMRLDEAEKLLENKARQGSNPDVYGYSYLIQSYCKMGNLIKAVDHYEAMVSHG 65

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD----VDRTRICNIYLRALCLIKNP 260
              + H    L++       L    +V+ + L  KD    +D+  I NI +   C   N 
Sbjct: 66  IETNCHIVSYLLQCF---RKLGMTSEVIAYFLKFKDSGLHLDKV-IYNIAMDTYCKNGNM 121

Query: 261 TELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTT 320
            E + +L  M      PD I    +ING+C  G ++ A +V  +M+      PD VT+  
Sbjct: 122 NEAVKLLNEMKCGGLTPDKIHYTCLINGYCLKGEMQNAQQVFEEMLKANI-EPDIVTYNI 180

Query: 321 IIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI 380
           +  G    G + E  +LL + M  +G  P  +TY   + G  R   + EA+ +FN +   
Sbjct: 181 LASGFCKSGLVMEVFDLLDR-MADQGLEPNSLTYGIAIVGFCRGGNLSEAEVLFNVVEEK 239

Query: 381 GVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEA 440
           G+      Y+ ++ G   S   D A   +  +    N+ D++  + +I  LCR G +  A
Sbjct: 240 GIDHIEVMYSSMVCGYLLSGWTDHAYMLFVRVARQGNLVDHFSCSKLINDLCRVGNVQGA 299

Query: 441 VHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            +    +++  V P+++ Y+ +I   C+     +A+    +M + GL+ D + + IL
Sbjct: 300 SNVCKIMLEHNVVPDVISYSKLISIYCQNGDMDKAHLWFHDMVQRGLSIDVIVYTIL 356



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 105/218 (48%), Gaps = 10/218 (4%)

Query: 283 NTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVM 342
           N V++G CK  R++EA K+L +  A +   PD   ++ +I     +G + +A++  Y+ M
Sbjct: 4   NMVMDGLCKEMRLDEAEKLLENK-ARQGSNPDVYGYSYLIQSYCKMGNLIKAVDH-YEAM 61

Query: 343 PQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQL 402
              G        + +L+   +L    E    F      G+  D   Y I +D  C++  +
Sbjct: 62  VSHGIETNCHIVSYLLQCFRKLGMTSEVIAYFLKFKDSGLHLDKVIYNIAMDTYCKNGNM 121

Query: 403 DEAKRFWDDI----VWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVC 458
           +EA +  +++    + P  IH    Y  +I G C  G++  A     E++ + + P+IV 
Sbjct: 122 NEAVKLLNEMKCGGLTPDKIH----YTCLINGYCLKGEMQNAQQVFEEMLKANIEPDIVT 177

Query: 459 YNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRI 496
           YN++  G CK  +  E + +L  M   GL P+++T+ I
Sbjct: 178 YNILASGFCKSGLVMEVFDLLDRMADQGLEPNSLTYGI 215


>gi|297849764|ref|XP_002892763.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297338605|gb|EFH69022.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 804

 Score =  178 bits (451), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 145/541 (26%), Positives = 241/541 (44%), Gaps = 61/541 (11%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M   C L  V  A   F  +   G VP+V S+  LI+G C  G +  A ++  +M   GV
Sbjct: 248 MSSYCKLGFVDMAKSFFCTVLKCGLVPSVYSHNILINGLCLVGSIAEALELASDMNKHGV 307

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+S+TY++LV+G      +  A  ++  + ++      LS +   +  L+   C+ G +
Sbjct: 308 EPDSVTYNILVKGFHLLGMISGAGEVIQDMLDK-----GLSPDVITYTILLCGQCQLGNI 362

Query: 121 NEVFRIAEDM-PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           +    + +DM  +G  +        M+  LC++GR   A  + Y +   GLTP LV+Y+ 
Sbjct: 363 DMGLILLKDMLSRGFELKSIIPYSVMLSGLCKTGRVDEALSLFYDLEAYGLTPDLVAYSI 422

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++HGLCK G    A ++ +E      LP+  T   ++ GLC +  L +AR +L  ++S  
Sbjct: 423 VIHGLCKLGKFDMAVRVYDEMCYKRILPNSRTLGAIMLGLCQKGMLLEARSLLDSLISSG 482

Query: 240 DVDRTRICNI----YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 295
           D     + NI    Y ++ C I+   EL  V +   ++   P+V T N++I G+CK   I
Sbjct: 483 DTLDIILYNIVIDGYAKSGC-IEEALELFKVAI---ESGITPNVATFNSLIYGYCKTQNI 538

Query: 296 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG-------------------------- 329
            EA K+L D++      P  V++TT++    N G                          
Sbjct: 539 AEARKIL-DVIKLYGLVPSVVSYTTLMDAYANCGSIKSIEELRREMKAEGIPPTNVTYSV 597

Query: 330 --------------------RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEE 369
                               RI E  N + + M   G +P  +TYN +++ L R++ +  
Sbjct: 598 IFKGLCRGWKLENCNQVLRERILEKFNHVLRDMESEGITPDQITYNTIIQYLCRVKHLSR 657

Query: 370 AKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIK 429
           A E+F  M    +   S TY I+ID LC    + +A RF   +   +     + Y  +IK
Sbjct: 658 AFELFKKMKSQNLDPTSATYNILIDSLCIYGCIRKADRFLYSLQKRNVSLSKFAYTTVIK 717

Query: 430 GLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNP 489
             C  G    AV    +L+D G   +I  Y+ VI+  C+  +  E+      M   G++P
Sbjct: 718 AHCVKGDPEMAVILFNQLLDRGFNVSIRDYSAVINRLCRRHLAIESKYFFCLMLSRGISP 777

Query: 490 D 490
           D
Sbjct: 778 D 778



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 123/463 (26%), Positives = 230/463 (49%), Gaps = 23/463 (4%)

Query: 53  DEMRHCGVLPNS--------LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNN 104
           +E + C +L NS        L + +L+    R R V+ +  ++ K+ +R     +L+V+ 
Sbjct: 124 EEGKLCELLSNSFRKWESTGLVWDMLLFLSSRLRMVDESLYILKKMKDR-----NLNVST 178

Query: 105 AAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYV 164
            ++ +++ +      + +V++  +D         E     ++D LCR  +   A   +  
Sbjct: 179 QSYNSVLYNFRETDKMWDVYKEIKD-------KNEHTYSTVVDGLCRQQKLEDAVLFLRT 231

Query: 165 MRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESD 224
              + + PS+VS+NSI+   CK G    A       ++ G +PS +++ +L+ GLC    
Sbjct: 232 SEWKDIGPSVVSFNSIMSSYCKLGFVDMAKSFFCTVLKCGLVPSVYSHNILINGLCLVGS 291

Query: 225 LEKARKVLQFMLSKKDVDRTRIC-NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLN 283
           + +A ++   M +K  V+   +  NI ++   L+   +    V+  ML     PDVIT  
Sbjct: 292 IAEALELASDM-NKHGVEPDSVTYNILVKGFHLLGMISGAGEVIQDMLDKGLSPDVITYT 350

Query: 284 TVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMP 343
            ++ G C++G I+  L +L DM++  F     + ++ ++ GL   GR+ EAL+L Y  + 
Sbjct: 351 ILLCGQCQLGNIDMGLILLKDMLSRGFELKSIIPYSVMLSGLCKTGRVDEALSLFYD-LE 409

Query: 344 QRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLD 403
             G +P +V Y+ V+ GL +L + + A  V++ M    ++ +S T   ++ GLC+   L 
Sbjct: 410 AYGLTPDLVAYSIVIHGLCKLGKFDMAVRVYDEMCYKRILPNSRTLGAIMLGLCQKGMLL 469

Query: 404 EAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463
           EA+   D ++   +  D  +Y  +I G  +SG I EA+      ++SG+TPN+  +N +I
Sbjct: 470 EARSLLDSLISSGDTLDIILYNIVIDGYAKSGCIEEALELFKVAIESGITPNVATFNSLI 529

Query: 464 DGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
            G CK     EA +IL  ++  GL P  V++  L   + N G+
Sbjct: 530 YGYCKTQNIAEARKILDVIKLYGLVPSVVSYTTLMDAYANCGS 572



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 129/539 (23%), Positives = 248/539 (46%), Gaps = 62/539 (11%)

Query: 7   LSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLT 66
           L  V E+  +   MK R    +  SY ++++ +  T +M   + V+ E++      N  T
Sbjct: 156 LRMVDESLYILKKMKDRNLNVSTQSYNSVLYNFRETDKM---WDVYKEIKD----KNEHT 208

Query: 67  YSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRI 126
           YS +V G+ R + +E A + +     R  E +D+  +  +F +++ S C+ G+V+     
Sbjct: 209 YSTVVDGLCRQQKLEDAVLFL-----RTSEWKDIGPSVVSFNSIMSSYCKLGFVDMAKSF 263

Query: 127 AEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK 186
              + +   V   ++   +I+ LC  G    A  +   M K G+ P  V+YN +V G   
Sbjct: 264 FCTVLKCGLVPSVYSHNILINGLCLVGSIAEALELASDMNKHGVEPDSVTYNILVKGFHL 323

Query: 187 HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRI 246
            G    A +++++ +  G  P   TY +L+ G C   +++    +L+ MLS+    ++ I
Sbjct: 324 LGMISGAGEVIQDMLDKGLSPDVITYTILLCGQCQLGNIDMGLILLKDMLSRGFELKSII 383

Query: 247 -CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM 305
             ++ L  LC      E L++   +      PD++  + VI+G CK+G+ + A++V ++M
Sbjct: 384 PYSVMLSGLCKTGRVDEALSLFYDLEAYGLTPDLVAYSIVIHGLCKLGKFDMAVRVYDEM 443

Query: 306 VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLR 365
              +   P++ T   I+ GL   G + EA +LL  ++   G +  I+ YN V+ G  +  
Sbjct: 444 CYKRI-LPNSRTLGAIMLGLCQKGMLLEARSLLDSLISS-GDTLDIILYNIVIDGYAKSG 501

Query: 366 RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD---------DIVWPS 416
            +EEA E+F   +  G+  +  T+  +I G C++  + EA++  D          +V  +
Sbjct: 502 CIEEALELFKVAIESGITPNVATFNSLIYGYCKTQNIAEARKILDVIKLYGLVPSVVSYT 561

Query: 417 NIHDNY--------------------------VYAAMIKGLCRSGKIH------------ 438
            + D Y                           Y+ + KGLCR  K+             
Sbjct: 562 TLMDAYANCGSIKSIEELRREMKAEGIPPTNVTYSVIFKGLCRGWKLENCNQVLRERILE 621

Query: 439 EAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           +  H L ++   G+TP+ + YN +I   C++     A+++ ++M+   L+P + T+ IL
Sbjct: 622 KFNHVLRDMESEGITPDQITYNTIIQYLCRVKHLSRAFELFKKMKSQNLDPTSATYNIL 680



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/256 (25%), Positives = 119/256 (46%), Gaps = 7/256 (2%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C    + EA K+   +K  G VP+VVSYTTL+  Y   G +    ++  EM+  G+ P +
Sbjct: 533 CKTQNIAEARKILDVIKLYGLVPSVVSYTTLMDAYANCGSIKSIEELRREMKAEGIPPTN 592

Query: 65  LTYSVLVRGVLRTRDVERAN-VLMFKLWERMK------EEEDLSVNNAAFANLVDSLCRE 117
           +TYSV+ +G+ R   +E  N VL  ++ E+        E E ++ +   +  ++  LCR 
Sbjct: 593 VTYSVIFKGLCRGWKLENCNQVLRERILEKFNHVLRDMESEGITPDQITYNTIIQYLCRV 652

Query: 118 GYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
            +++  F + + M              +IDSLC  G    A R +Y ++KR ++ S  +Y
Sbjct: 653 KHLSRAFELFKKMKSQNLDPTSATYNILIDSLCIYGCIRKADRFLYSLQKRNVSLSKFAY 712

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
            +++   C  G    A  L  + +  G+  S   Y  ++  LC      +++     MLS
Sbjct: 713 TTVIKAHCVKGDPEMAVILFNQLLDRGFNVSIRDYSAVINRLCRRHLAIESKYFFCLMLS 772

Query: 238 KKDVDRTRICNIYLRA 253
           +       IC + +++
Sbjct: 773 RGISPDLDICEVMIKS 788


>gi|297833654|ref|XP_002884709.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330549|gb|EFH60968.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 689

 Score =  178 bits (451), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 123/483 (25%), Positives = 234/483 (48%), Gaps = 13/483 (2%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M   G  P+V SY+T+I+   +TG++D A ++FDEM    V P+   Y++L+ G L+ +D
Sbjct: 175 MWKEGFKPDVFSYSTVINDLAKTGKLDDALELFDEMSERRVAPDVTCYNILIDGFLKEKD 234

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
            + A     +LW+++ E+  +  N      ++  L + G V++  +I + M Q +   + 
Sbjct: 235 HKMA----MQLWDKLLEDSSVYPNVKTHNIMISGLSKCGRVDDCLKIWDRMKQNEREKDL 290

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG---CMRAYQL 196
           +    +I  LC  G    A  V   + +R     +V+YN+++ G C+ G     +  +++
Sbjct: 291 YTYSSLIHGLCDEGNVDKAESVFNELVERKAFIDVVTYNTMLGGFCRCGKIKESLELWRI 350

Query: 197 LEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCL 256
           +E+      +    +Y +L++GL     +++A  + + M +K          I++  LC+
Sbjct: 351 MEQRNSVNIV----SYNILIKGLLENGKIDEATMIWRLMPAKGYAADNTTYGIFIHGLCV 406

Query: 257 IKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAV 316
                + L V+  +       DV    ++I+  CK  R+EEA  ++ +M +      ++ 
Sbjct: 407 NGYVNKALGVMQEVESKGGHLDVYAYASIIDCLCKKRRLEEASNLVKEM-SKHGVELNSH 465

Query: 317 TFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNC 376
               +I GL+   R+ +A +LL + M + G  P +V+YN ++ GL    +  EA      
Sbjct: 466 VCNALIGGLIRDSRLSDA-SLLMRGMGKNGCLPTVVSYNILICGLCEAGKFGEASAFVKE 524

Query: 377 MLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGK 436
           ML  G+  D  TY+I++ GLC   +++ A   W   +      D  ++  +I GLC  GK
Sbjct: 525 MLENGLKPDLKTYSILLGGLCRDRKIELALELWHQFLQSGLEPDVMMHNILIHGLCSVGK 584

Query: 437 IHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRI 496
           + +A+  +  +     T N+V YN +++G  K+     A  I   M K GL PD +++  
Sbjct: 585 LDDAMTVMANMEHRNCTANLVTYNTLMEGYFKVRDSNRATVIWGYMYKMGLQPDIISYNT 644

Query: 497 LDK 499
           + K
Sbjct: 645 ILK 647



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 115/476 (24%), Positives = 229/476 (48%), Gaps = 52/476 (10%)

Query: 27  PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVL 86
           P + SY TL++ +    +      +F      GV PN  TY+VL++   + ++ E+A   
Sbjct: 112 PGIRSYNTLLNAFVEAKQWVKVESLFAYFETAGVAPNLQTYNVLIKMSCKKKEFEKARGF 171

Query: 87  MFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMI 146
           +  +W     +E    +  +++ +++ L + G +++   + ++M + +   +      +I
Sbjct: 172 LNWMW-----KEGFKPDVFSYSTVINDLAKTGKLDDALELFDEMSERRVAPDVTCYNILI 226

Query: 147 DSLCRSGRNHGASRVVY--VMRKRGLTPSLVSYNSIVHGLCKHG---GCMRAYQLLEEGI 201
           D   +  ++H  +  ++  ++    + P++ ++N ++ GL K G    C++ +  +++  
Sbjct: 227 DGFLKE-KDHKMAMQLWDKLLEDSSVYPNVKTHNIMISGLSKCGRVDDCLKIWDRMKQNE 285

Query: 202 QFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPT 261
           +   L   +TY  L+ GLC E +++KA  V   ++ +K                      
Sbjct: 286 REKDL---YTYSSLIHGLCDEGNVDKAESVFNELVERK---------------------- 320

Query: 262 ELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTI 321
                  F+       DV+T NT++ GFC+ G+I+E+L++   M      + + V++  +
Sbjct: 321 ------AFI-------DVVTYNTMLGGFCRCGKIKESLELWRIMEQRN--SVNIVSYNIL 365

Query: 322 IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG 381
           I GLL  G+I EA  +++++MP +GY+    TY   + GL     V +A  V   +   G
Sbjct: 366 IKGLLENGKIDEA-TMIWRLMPAKGYAADNTTYGIFIHGLCVNGYVNKALGVMQEVESKG 424

Query: 382 VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAV 441
              D   YA +ID LC+  +L+EA     ++       +++V  A+I GL R  ++ +A 
Sbjct: 425 GHLDVYAYASIIDCLCKKRRLEEASNLVKEMSKHGVELNSHVCNALIGGLIRDSRLSDAS 484

Query: 442 HFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
             +  +  +G  P +V YN++I G C+     EA   ++EM +NGL PD  T+ IL
Sbjct: 485 LLMRGMGKNGCLPTVVSYNILICGLCEAGKFGEASAFVKEMLENGLKPDLKTYSIL 540



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 100/390 (25%), Positives = 193/390 (49%), Gaps = 8/390 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC    V +A  +F ++  R    +VV+Y T++ G+CR G++  + +++  M     + N
Sbjct: 300 LCDEGNVDKAESVFNELVERKAFIDVVTYNTMLGGFCRCGKIKESLELWRIMEQRNSV-N 358

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            ++Y++L++G+L    ++ A ++    W R+   +  + +N  +   +  LC  GYVN+ 
Sbjct: 359 IVSYNILIKGLLENGKIDEATMI----W-RLMPAKGYAADNTTYGIFIHGLCVNGYVNKA 413

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             + +++       + +A   +ID LC+  R   AS +V  M K G+  +    N+++ G
Sbjct: 414 LGVMQEVESKGGHLDVYAYASIIDCLCKKRRLEEASNLVKEMSKHGVELNSHVCNALIGG 473

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           L +      A  L+    + G LP+  +Y +L+ GLC      +A   ++ ML       
Sbjct: 474 LIRDSRLSDASLLMRGMGKNGCLPTVVSYNILICGLCEAGKFGEASAFVKEMLENGLKPD 533

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
            +  +I L  LC  +     L +    LQ+  +PDV+  N +I+G C +G++++A+ V+ 
Sbjct: 534 LKTYSILLGGLCRDRKIELALELWHQFLQSGLEPDVMMHNILIHGLCSVGKLDDAMTVMA 593

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           +M   + C  + VT+ T++ G   V R      +++  M + G  P I++YN +L+GL  
Sbjct: 594 NM-EHRNCTANLVTYNTLMEGYFKV-RDSNRATVIWGYMYKMGLQPDIISYNTILKGLCL 651

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVI 393
             RV  A E F+     G+     T+ I++
Sbjct: 652 CHRVSYAIEFFDDARNHGIFPTVYTWNILV 681



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 107/407 (26%), Positives = 193/407 (47%), Gaps = 10/407 (2%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           CG  RV +  K++  MK      ++ +Y++LIHG C  G +D A  VF+E+       + 
Sbjct: 268 CG--RVDDCLKIWDRMKQNEREKDLYTYSSLIHGLCDEGNVDKAESVFNELVERKAFIDV 325

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           +TY+ ++ G  R   ++ +     +LW  M++    SVN  ++  L+  L   G ++E  
Sbjct: 326 VTYNTMLGGFCRCGKIKES----LELWRIMEQRN--SVNIVSYNILIKGLLENGKIDEAT 379

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
            I   MP      +    G  I  LC +G  + A  V+  +  +G    + +Y SI+  L
Sbjct: 380 MIWRLMPAKGYAADNTTYGIFIHGLCVNGYVNKALGVMQEVESKGGHLDVYAYASIIDCL 439

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
           CK      A  L++E  + G   + H    L+ GL  +S L  A  +++ M     +   
Sbjct: 440 CKKRRLEEASNLVKEMSKHGVELNSHVCNALIGGLIRDSRLSDASLLMRGMGKNGCLPTV 499

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
              NI +  LC      E    +  ML+   +PD+ T + ++ G C+  +IE AL++ + 
Sbjct: 500 VSYNILICGLCEAGKFGEASAFVKEMLENGLKPDLKTYSILLGGLCRDRKIELALELWHQ 559

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
            +      PD +    +I GL +VG++ +A+ ++   M  R  +  +VTYN ++ G F++
Sbjct: 560 FLQSGL-EPDVMMHNILIHGLCSVGKLDDAMTVMAN-MEHRNCTANLVTYNTLMEGYFKV 617

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDD 411
           R    A  ++  M  +G+  D  +Y  ++ GLC  +++  A  F+DD
Sbjct: 618 RDSNRATVIWGYMYKMGLQPDIISYNTILKGLCLCHRVSYAIEFFDD 664



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 107/447 (23%), Positives = 197/447 (44%), Gaps = 50/447 (11%)

Query: 60  VLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGY 119
           V P SL+     + VL+    E+     F L++        + +   + +++  L     
Sbjct: 3   VFPKSLS----PKHVLKLLKSEKNPRAAFALFDSATRHPGYAHSAVVYHHILRRLSEARM 58

Query: 120 VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKR----GLTPSLV 175
           V  V RI E +   +   +E     +I +    G+N    R + V ++     G  P + 
Sbjct: 59  VTHVGRIVELIRSQECKCDEDVALSVIKTY---GKNSMPDRALDVFKRMREIFGCEPGIR 115

Query: 176 SYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM 235
           SYN++++   +    ++   L       G  P+  TY VL++  C + + EKAR  L +M
Sbjct: 116 SYNTLLNAFVEAKQWVKVESLFAYFETAGVAPNLQTYNVLIKMSCKKKEFEKARGFLNWM 175

Query: 236 LSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 295
                                               +   +PDV + +TVIN   K G++
Sbjct: 176 W-----------------------------------KEGFKPDVFSYSTVINDLAKTGKL 200

Query: 296 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN 355
           ++AL++ ++M + +  APD   +  +I G L     + A+ L  +++      P + T+N
Sbjct: 201 DDALELFDEM-SERRVAPDVTCYNILIDGFLKEKDHKMAMQLWDKLLEDSSVYPNVKTHN 259

Query: 356 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP 415
            ++ GL +  RV++  ++++ M       D  TY+ +I GLC+   +D+A+  ++++V  
Sbjct: 260 IMISGLSKCGRVDDCLKIWDRMKQNEREKDLYTYSSLIHGLCDEGNVDKAESVFNELVER 319

Query: 416 SNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREA 475
               D   Y  M+ G CR GKI E++  L+ +++   + NIV YN++I G  +     EA
Sbjct: 320 KAFIDVVTYNTMLGGFCRCGKIKESLE-LWRIMEQRNSVNIVSYNILIKGLLENGKIDEA 378

Query: 476 YQILREMRKNGLNPDAVTWRILDKLHG 502
             I R M   G   D  T+ I   +HG
Sbjct: 379 TMIWRLMPAKGYAADNTTYGIF--IHG 403



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 101/215 (46%), Gaps = 11/215 (5%)

Query: 8   SRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTY 67
           SR+ +A  L   M   G +P VVSY  LI G C  G+   A     EM   G+ P+  TY
Sbjct: 478 SRLSDASLLMRGMGKNGCLPTVVSYNILICGLCEAGKFGEASAFVKEMLENGLKPDLKTY 537

Query: 68  SVLVRGVLRTRDVERANVLMFKLWERMKE---EEDLSVNNAAFANLVDSLCREGYVNEVF 124
           S+L+ G+ R R +E    L  +LW +  +   E D+ ++N     L+  LC  G +++  
Sbjct: 538 SILLGGLCRDRKIE----LALELWHQFLQSGLEPDVMMHNI----LIHGLCSVGKLDDAM 589

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
            +  +M              +++   +   ++ A+ +   M K GL P ++SYN+I+ GL
Sbjct: 590 TVMANMEHRNCTANLVTYNTLMEGYFKVRDSNRATVIWGYMYKMGLQPDIISYNTILKGL 649

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGL 219
           C       A +  ++    G  P+ +T+ +LV  +
Sbjct: 650 CLCHRVSYAIEFFDDARNHGIFPTVYTWNILVRAV 684



 Score = 46.2 bits (108), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 34/59 (57%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTR 78
           M   G  P+++SY T++ G C    +  A + FD+ R+ G+ P   T+++LVR V+  +
Sbjct: 630 MYKMGLQPDIISYNTILKGLCLCHRVSYAIEFFDDARNHGIFPTVYTWNILVRAVVNRK 688


>gi|302806549|ref|XP_002985024.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
 gi|300147234|gb|EFJ13899.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
          Length = 570

 Score =  178 bits (451), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 120/438 (27%), Positives = 213/438 (48%), Gaps = 44/438 (10%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D L    ++ +A  L   + + G  P + +Y  L++G C+ G ++ A  +  ++   G 
Sbjct: 172 VDWLAKNKKIQDAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGC 231

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TY+ L+ G+ +    E+ +   +KL++ M     L ++   +  L+  L + G +
Sbjct: 232 TPDVVTYTSLIDGLGK----EKRSFEAYKLFKEMA-LRGLVLDTVCYTALIRGLLQAGKI 286

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +   + + M     V +      MID LC++GR   A R+   M  RGL P+ V Y+++
Sbjct: 287 PQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSAL 346

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +HGLCK      A ++L +  +    P   TY +L++GLC   D+E AR           
Sbjct: 347 IHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFD------- 399

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                        ML+  C+PDV T N +++GFCK G  + A  
Sbjct: 400 ----------------------------EMLEAGCKPDVYTYNILVSGFCKAGNTDAACG 431

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           V +DM +   C+P+ VT+ T+I GL    ++ +A +L +Q M +RG  P    Y++++ G
Sbjct: 432 VFDDM-SSSHCSPNVVTYGTLISGLCKRRQLTKA-SLYFQHMKERGCPPDSFVYSSLVDG 489

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L +  ++E    +F+ M   G VA+S T   +I  LC++N++DEA   ++ I      H 
Sbjct: 490 LCKSGKLEGGCMLFDEMERSG-VANSQTRTRLIFHLCKANRVDEAVSLFNAIRKEGMPHP 548

Query: 421 NYVYAAMIKGLCRSGKIH 438
            Y Y ++I  L +S K++
Sbjct: 549 -YAYNSIISTLIKSAKVN 565



 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 122/445 (27%), Positives = 209/445 (46%), Gaps = 7/445 (1%)

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           LP+  T++VL+ G    R+ E A    F +   M+E+  ++ +      ++  LC+ G V
Sbjct: 91  LPDVETWNVLITGYCLAREPEEA----FAVIREMEEDYGVAPSLKTHNLVLHGLCKSGKV 146

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                  E         +      ++D L ++ +   A  ++  +   G TP++ +YN++
Sbjct: 147 LAAMDHFETTTTNGCTIDIHTYTAIVDWLAKNKKIQDAVALMEKITANGCTPTIATYNAL 206

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++GLCK G    A  LL + +  G  P   TY  L++GL  E    +A K+ + M  +  
Sbjct: 207 LNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGL 266

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           V  T      +R L       +  +V   M    C PDV+TL+T+I+G CK GRI  A++
Sbjct: 267 VLDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVR 326

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +   M A +  AP+ V ++ +I GL    ++  AL +L Q M +   +P  +TYN ++ G
Sbjct: 327 IFKSMEA-RGLAPNEVVYSALIHGLCKARKMDCALEMLAQ-MKKAFCTPDTITYNILIDG 384

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L +   VE A+  F+ ML  G   D  TY I++ G C++   D A   +DD+       +
Sbjct: 385 LCKSGDVEAARAFFDEMLEAGCKPDVYTYNILVSGFCKAGNTDAACGVFDDMSSSHCSPN 444

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              Y  +I GLC+  ++ +A  +   + + G  P+   Y+ ++DG CK         +  
Sbjct: 445 VVTYGTLISGLCKRRQLTKASLYFQHMKERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFD 504

Query: 481 EMRKNGL-NPDAVTWRILDKLHGNR 504
           EM ++G+ N    T  I      NR
Sbjct: 505 EMERSGVANSQTRTRLIFHLCKANR 529



 Score =  157 bits (398), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 106/440 (24%), Positives = 202/440 (45%), Gaps = 9/440 (2%)

Query: 24  GHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERA 83
           G  P++ ++  ++HG C++G++  A   F+     G   +  TY+ +V  + + + ++ A
Sbjct: 125 GVAPSLKTHNLVLHGLCKSGKVLAAMDHFETTTTNGCTIDIHTYTAIVDWLAKNKKIQDA 184

Query: 84  NVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACG 143
             LM K+          +   A +  L++ LC+ G + E   +   +       +     
Sbjct: 185 VALMEKI-----TANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYT 239

Query: 144 HMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQF 203
            +ID L +  R+  A ++   M  RGL    V Y +++ GL + G   +A  + +     
Sbjct: 240 SLIDGLGKEKRSFEAYKLFKEMALRGLVLDTVCYTALIRGLLQAGKIPQASSVYKTMTSQ 299

Query: 204 GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTEL 263
           G +P   T   +++GLC    +  A ++ + M ++       + +  +  LC  +     
Sbjct: 300 GCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCA 359

Query: 264 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF 323
           L +L  M +  C PD IT N +I+G CK G +E A    ++M+    C PD  T+  ++ 
Sbjct: 360 LEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAG-CKPDVYTYNILVS 418

Query: 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 383
           G    G    A   ++  M     SP +VTY  ++ GL + R++ +A   F  M   G  
Sbjct: 419 GFCKAGNTDAACG-VFDDMSSSHCSPNVVTYGTLISGLCKRRQLTKASLYFQHMKERGCP 477

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
            DS  Y+ ++DGLC+S +L+     +D++   S + ++     +I  LC++ ++ EAV  
Sbjct: 478 PDSFVYSSLVDGLCKSGKLEGGCMLFDEM-ERSGVANSQTRTRLIFHLCKANRVDEAVSL 536

Query: 444 LYELVDSGVTPNIVCYNVVI 463
              +   G+ P+   YN +I
Sbjct: 537 FNAIRKEGM-PHPYAYNSII 555



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 89/313 (28%), Positives = 153/313 (48%), Gaps = 7/313 (2%)

Query: 193 AYQLLE--EGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIY 250
           A++L +     +FG+  S HT   L++         +A  +L+  L+   +      N+ 
Sbjct: 41  AWELFQCLSSPRFGFQHSVHTGNALLDVFARTKRHREAGNLLKNELATTFLPDVETWNVL 100

Query: 251 LRALCLIKNPTELLNVLVFMLQTQ-CQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK 309
           +   CL + P E   V+  M +     P + T N V++G CK G++  A+    +     
Sbjct: 101 ITGYCLAREPEEAFAVIREMEEDYGVAPSLKTHNLVLHGLCKSGKVLAAMDHF-ETTTTN 159

Query: 310 FCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEE 369
            C  D  T+T I+  L    +IQ+A+ L+ ++    G +P I TYNA+L GL ++ R+EE
Sbjct: 160 GCTIDIHTYTAIVDWLAKNKKIQDAVALMEKITAN-GCTPTIATYNALLNGLCKMGRLEE 218

Query: 370 AKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIK 429
           A ++   ++  G   D  TY  +IDGL +  +  EA + + ++     + D   Y A+I+
Sbjct: 219 AIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTVCYTALIR 278

Query: 430 GLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNP 489
           GL ++GKI +A      +   G  P++V  + +IDG CK      A +I + M   GL P
Sbjct: 279 GLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAP 338

Query: 490 DAVTWRILDKLHG 502
           + V +  L  +HG
Sbjct: 339 NEVVYSAL--IHG 349


>gi|297817780|ref|XP_002876773.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297322611|gb|EFH53032.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 559

 Score =  178 bits (451), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 116/485 (23%), Positives = 226/485 (46%), Gaps = 10/485 (2%)

Query: 22  SRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVE 81
           SRG+ P+  S+ +++   C+ G++  A  +   M   G  P+ ++Y+ L+ G  R  D+ 
Sbjct: 49  SRGYAPHRSSFNSVVSFVCKLGQVKFAVDIVHSMPRFGCEPDVISYNSLIDGHCRNGDIR 108

Query: 82  RANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFA 141
            A +++  L  R         +  +F  L +   +   ++EVF     M +  S N    
Sbjct: 109 SACLVLESL--RASYGFTCKPDIVSFNTLFNGFSKMKMLDEVFVYMGVMLKCCSPNV-VT 165

Query: 142 CGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGI 201
               ID  C+SG    A +    M++  L P++V++  ++ G CK G       L EE  
Sbjct: 166 YSTWIDMFCKSGELKLALKSFNCMKRDALFPNVVTFTCLIDGYCKAGDLEVVVSLYEEMR 225

Query: 202 QFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPT 261
           +     +  TY  L++G C + ++++A  +   ML  +    + +    +       +  
Sbjct: 226 RVRMSLNVVTYTALIDGFCKKGEMQRAGGMYLRMLEDRVEPNSLVYTTIINGFFQRGDSD 285

Query: 262 ELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTI 321
             +  L  ML    + D+     +I+G C +G+++EA +++ DM  G    PD + FTT+
Sbjct: 286 NAMKFLAKMLNQGMRLDITAYGVIISGLCGIGKLKEATEIVEDMEKGDL-VPDMMIFTTM 344

Query: 322 IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG 381
           +      GR++ A+N+ Y  + +RG+ P +V  + ++ G+ +  ++ EA   F       
Sbjct: 345 MNAYFKSGRMKAAVNM-YHKLIERGFEPDVVALSTMIDGIAKNGQLHEAISYF-----CT 398

Query: 382 VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAV 441
             A+   Y ++ID LC+     E +R +  I     + D ++Y + I GLC+ G + +A 
Sbjct: 399 EKANDVMYTVLIDALCKEEDFIEVERLFSKISEAGLVPDKFMYTSWIAGLCKQGNLVDAF 458

Query: 442 HFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLH 501
               ++V  G+  ++  Y  +I G     +  EA Q+  EM ++G+ PD+  + +L + +
Sbjct: 459 KLKTKMVQEGLELDLFAYTTLIYGLTSKGLMVEARQVFDEMLRSGVCPDSAVFDLLIRAY 518

Query: 502 GNRGN 506
              GN
Sbjct: 519 EKEGN 523



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 93/382 (24%), Positives = 169/382 (44%), Gaps = 43/382 (11%)

Query: 120 VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           V E  +    + +  ++ +   C   I  L  S     + + +  +  RG  P   S+NS
Sbjct: 2   VKEALQFLSRLRKSSNLPDPVTCNKHIHQLINSNCGALSLKFLAYLVSRGYAPHRSSFNS 61

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           +V  +CK G    A  ++    +FG  P   +Y  L++G C   D               
Sbjct: 62  VVSFVCKLGQVKFAVDIVHSMPRFGCEPDVISYNSLIDGHCRNGD--------------- 106

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                      +R+ CL+      L  L       C+PD+++ NT+ NGF KM  ++E  
Sbjct: 107 -----------IRSACLV------LESLRASYGFTCKPDIVSFNTLFNGFSKMKMLDEVF 149

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
             +  M+  K C+P+ VT++T I      G ++ AL   +  M +    P +VT+  ++ 
Sbjct: 150 VYMGVML--KCCSPNVVTYSTWIDMFCKSGELKLALK-SFNCMKRDALFPNVVTFTCLID 206

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK----RFWDDIVWP 415
           G  +   +E    ++  M  + +  +  TY  +IDG C+  ++  A     R  +D V P
Sbjct: 207 GYCKAGDLEVVVSLYEEMRRVRMSLNVVTYTALIDGFCKKGEMQRAGGMYLRMLEDRVEP 266

Query: 416 SNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREA 475
           +++    VY  +I G  + G    A+ FL ++++ G+  +I  Y V+I G C +   +EA
Sbjct: 267 NSL----VYTTIINGFFQRGDSDNAMKFLAKMLNQGMRLDITAYGVIISGLCGIGKLKEA 322

Query: 476 YQILREMRKNGLNPDAVTWRIL 497
            +I+ +M K  L PD + +  +
Sbjct: 323 TEIVEDMEKGDLVPDMMIFTTM 344



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 96/385 (24%), Positives = 168/385 (43%), Gaps = 45/385 (11%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C    +  A K F  MK     PNVV++T LI GYC+ G+++V   +++EMR   +
Sbjct: 170 IDMFCKSGELKLALKSFNCMKRDALFPNVVTFTCLIDGYCKAGDLEVVVSLYEEMRRVRM 229

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDL-------------SVNNA-- 105
             N +TY+ L+ G  +  +++RA  +  ++ E   E   L               +NA  
Sbjct: 230 SLNVVTYTALIDGFCKKGEMQRAGGMYLRMLEDRVEPNSLVYTTIINGFFQRGDSDNAMK 289

Query: 106 ---------------AFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC 150
                          A+  ++  LC  G + E   I EDM +G  V +      M+++  
Sbjct: 290 FLAKMLNQGMRLDITAYGVIISGLCGIGKLKEATEIVEDMEKGDLVPDMMIFTTMMNAYF 349

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
           +SGR   A  + + + +RG  P +V+ ++++ G+ K+G        L E I   Y  +E 
Sbjct: 350 KSGRMKAAVNMYHKLIERGFEPDVVALSTMIDGIAKNGQ-------LHEAIS--YFCTEK 400

Query: 211 T----YKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 266
                Y VL++ LC E D  +  ++   +     V    +   ++  LC   N  +   +
Sbjct: 401 ANDVMYTVLIDALCKEEDFIEVERLFSKISEAGLVPDKFMYTSWIAGLCKQGNLVDAFKL 460

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
              M+Q   + D+    T+I G    G + EA +V ++M+    C PD+  F  +I    
Sbjct: 461 KTKMVQEGLELDLFAYTTLIYGLTSKGLMVEARQVFDEMLRSGVC-PDSAVFDLLIRAYE 519

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGI 351
             G +  A +LL   M  RG +  +
Sbjct: 520 KEGNMTTASDLLLD-MQTRGLARAV 543



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 58/251 (23%), Positives = 122/251 (48%), Gaps = 16/251 (6%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LCG+ ++ EA ++  DM+    VP+++ +TT+++ Y ++G M  A  ++ ++   G  P+
Sbjct: 313 LCGIGKLKEATEIVEDMEKGDLVPDMMIFTTMMNAYFKSGRMKAAVNMYHKLIERGFEPD 372

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +  S ++ G+ +   +  A  + +   E+         N+  +  L+D+LC+E    EV
Sbjct: 373 VVALSTMIDGIAKNGQLHEA--ISYFCTEK--------ANDVMYTVLIDALCKEEDFIEV 422

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            R+   + +   V ++F     I  LC+ G    A ++   M + GL   L +Y ++++G
Sbjct: 423 ERLFSKISEAGLVPDKFMYTSWIAGLCKQGNLVDAFKLKTKMVQEGLELDLFAYTTLIYG 482

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK----- 238
           L   G  + A Q+ +E ++ G  P    + +L+     E ++  A  +L  M ++     
Sbjct: 483 LTSKGLMVEARQVFDEMLRSGVCPDSAVFDLLIRAYEKEGNMTTASDLLLDMQTRGLARA 542

Query: 239 -KDVDRTRICN 248
             D D ++ C+
Sbjct: 543 VSDADCSKQCD 553



 Score = 42.7 bits (99), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 44/103 (42%)

Query: 404 EAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463
           EA +F   +   SN+ D       I  L  S     ++ FL  LV  G  P+   +N V+
Sbjct: 4   EALQFLSRLRKSSNLPDPVTCNKHIHQLINSNCGALSLKFLAYLVSRGYAPHRSSFNSVV 63

Query: 464 DGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
              CKL   + A  I+  M + G  PD +++  L   H   G+
Sbjct: 64  SFVCKLGQVKFAVDIVHSMPRFGCEPDVISYNSLIDGHCRNGD 106


>gi|30794106|gb|AAP40495.1| unknown protein [Arabidopsis thaliana]
          Length = 974

 Score =  178 bits (451), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 128/490 (26%), Positives = 230/490 (46%), Gaps = 11/490 (2%)

Query: 10  VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSV 69
           V  A KL   M  +G VP   +Y  LI G C+   ++ A  +  EM   GV  ++ TYS+
Sbjct: 258 VDGALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSL 317

Query: 70  LVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAED 129
           L+ G+L+ R+ + A  L+ ++         +++    +   +  + +EG + +   + + 
Sbjct: 318 LIDGLLKGRNADAAKGLVHEMVSH-----GINIKPYMYDCCICVMSKEGVMEKAKALFDG 372

Query: 130 MPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG 189
           M     + +  A   +I+  CR         ++  M+KR +  S  +Y ++V G+C  G 
Sbjct: 373 MIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGD 432

Query: 190 CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNI 249
              AY +++E I  G  P+   Y  L++     S    A +VL+ M  +         N 
Sbjct: 433 LDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNS 492

Query: 250 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK 309
            +  L   K   E  + LV M++   +P+  T    I+G+ +      A K + +M   +
Sbjct: 493 LIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEM---R 549

Query: 310 FCA--PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRV 367
            C   P+ V  T +I       ++ EA +  Y+ M  +G      TY  ++ GLF+  +V
Sbjct: 550 ECGVLPNKVLCTGLINEYCKKEKVIEACSA-YRSMVDQGILGDAKTYTVLMNGLFKNDKV 608

Query: 368 EEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAM 427
           ++A+E+F  M G G+  D  +Y ++I+G  +   + +A   +D++V      +  +Y  +
Sbjct: 609 DDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNML 668

Query: 428 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
           + G CRSG+I +A   L E+   G+ PN V Y  +IDG CK     EA+++  EM+  GL
Sbjct: 669 LGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGL 728

Query: 488 NPDAVTWRIL 497
            PD+  +  L
Sbjct: 729 VPDSFVYTTL 738



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 131/570 (22%), Positives = 242/570 (42%), Gaps = 80/570 (14%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGY--------------------- 39
           +D LC + R+ +A  L  +M S G   +  +Y+ LI G                      
Sbjct: 284 IDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEMVSHGI 343

Query: 40  --------------CRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANV 85
                          + G M+ A  +FD M   G++P +  Y+ L+ G  R ++V +   
Sbjct: 344 NIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYE 403

Query: 86  LMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHM 145
           L+ ++ +R     ++ ++   +  +V  +C  G ++  + I ++M              +
Sbjct: 404 LLVEMKKR-----NIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTL 458

Query: 146 IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY 205
           I +  ++ R   A RV+  M+++G+ P +  YNS++ GL K      A   L E ++ G 
Sbjct: 459 IKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGL 518

Query: 206 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 265
            P+  TY   + G    S+   A K ++ M     +    +C   +   C  +   E  +
Sbjct: 519 KPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKEKVIEACS 578

Query: 266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 325
               M+      D  T   ++NG  K  ++++A ++  +M  GK  APD  ++  +I G 
Sbjct: 579 AYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREM-RGKGIAPDVFSYGVLINGF 637

Query: 326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 385
             +G +Q+A ++ +  M + G +P ++ YN +L G  R   +E+AKE+ + M   G+  +
Sbjct: 638 SKLGNMQKASSI-FDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPN 696

Query: 386 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAV---- 441
           + TY  +IDG C+S  L EA R +D++     + D++VY  ++ G CR   +  A+    
Sbjct: 697 AVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFG 756

Query: 442 ------------------------------HFLYELVDSGV----TPNIVCYNVVIDGAC 467
                                           L  L+D        PN V YN++ID  C
Sbjct: 757 TNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLC 816

Query: 468 KLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           K      A ++  +M+   L P  +T+  L
Sbjct: 817 KEGNLEAAKELFHQMQNANLMPTVITYTSL 846



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 114/497 (22%), Positives = 220/497 (44%), Gaps = 12/497 (2%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C    V + ++L  +MK R  V +  +Y T++ G C +G++D AY +  EM   G  PN 
Sbjct: 393 CREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNV 452

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           + Y+ L++  L+      A     ++ + MK E+ ++ +   + +L+  L +   ++E  
Sbjct: 453 VIYTTLIKTFLQNSRFGDA----MRVLKEMK-EQGIAPDIFCYNSLIIGLSKAKRMDEAR 507

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
               +M +       F  G  I     +     A + V  MR+ G+ P+ V    +++  
Sbjct: 508 SFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEY 567

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
           CK    + A       +  G L    TY VL+ GL     ++ A ++ + M  K      
Sbjct: 568 CKKEKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDV 627

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
               + +     + N  +  ++   M++    P+VI  N ++ GFC+ G IE+A ++L++
Sbjct: 628 FSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDE 687

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
           M   K   P+AVT+ TII G    G + EA   L+  M  +G  P    Y  ++ G  RL
Sbjct: 688 MSV-KGLHPNAVTYCTIIDGYCKSGDLAEAFR-LFDEMKLKGLVPDSFVYTTLVDGCCRL 745

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA----KRFWDDIVWPSNIHD 420
             VE A  +F      G  + +  +  +I+ + +  + +       R  D         +
Sbjct: 746 NDVERAITIFGTNKK-GCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPN 804

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
           +  Y  MI  LC+ G +  A    +++ ++ + P ++ Y  +++G  K+  + E + +  
Sbjct: 805 DVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFD 864

Query: 481 EMRKNGLNPDAVTWRIL 497
           E    G+ PD + + ++
Sbjct: 865 EAIAAGIEPDHIMYSVI 881



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 121/482 (25%), Positives = 214/482 (44%), Gaps = 20/482 (4%)

Query: 4   LCGLS---RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           + GLS   R+ EA     +M   G  PN  +Y   I GY    E   A K   EMR CGV
Sbjct: 494 IIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGV 553

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           LPN +  + L+    +   V  A       +  M ++  L  +   +  L++ L +   V
Sbjct: 554 LPNKVLCTGLINEYCKKEKVIEA----CSAYRSMVDQGILG-DAKTYTVLMNGLFKNDKV 608

Query: 121 NEVFRIAEDMPQGKSVNEE-FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           ++   I  +M +GK +  + F+ G +I+   + G    AS +   M + GLTP+++ YN 
Sbjct: 609 DDAEEIFREM-RGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNM 667

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++ G C+ G   +A +LL+E    G  P+  TY  +++G C   DL +A ++   M  K 
Sbjct: 668 LLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKG 727

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
            V  + +    +   C + N  E    +    +  C       N +IN   K G+ E   
Sbjct: 728 LVPDSFVYTTLVDGCCRL-NDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKT 786

Query: 300 KVLNDMVAG---KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
           +VLN ++ G   +F  P+ VT+  +I  L   G ++ A  L +Q M      P ++TY +
Sbjct: 787 EVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQ-MQNANLMPTVITYTS 845

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416
           +L G  ++ R  E   VF+  +  G+  D   Y+++I+   +     +A    D +   +
Sbjct: 846 LLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKN 905

Query: 417 NIHDNYVYA-----AMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSM 471
            + D    +     A++ G  + G++  A   +  +V     P+      +I+ +C  S 
Sbjct: 906 AVDDGCKLSISTCRALLSGFAKVGEMEVAEKVMENMVRLQYIPDSATVIELINESCISSN 965

Query: 472 KR 473
           +R
Sbjct: 966 QR 967



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 108/415 (26%), Positives = 194/415 (46%), Gaps = 53/415 (12%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M+ L    +V +A ++F +M+ +G  P+V SY  LI+G+ + G M  A  +FDEM   G+
Sbjct: 599 MNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGL 658

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN + Y++L+ G  R+ ++E+A  L+ ++       + L  N   +  ++D  C+ G +
Sbjct: 659 TPNVIIYNMLLGGFCRSGEIEKAKELLDEM-----SVKGLHPNAVTYCTIIDGYCKSGDL 713

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E FR+ ++M     V + F    ++D  CR      A   ++   K+G   S   +N++
Sbjct: 714 AEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAI-TIFGTNKKGCASSTAPFNAL 772

Query: 181 VHGLCKHGGCMRAYQLLEEGI-----QFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM 235
           ++ + K G      ++L   +     +FG  P++ TY ++++ LC E +LE A+++   M
Sbjct: 773 INWVFKFGKTELKTEVLNRLMDGSFDRFGK-PNDVTYNIMIDYLCKEGNLEAAKELFHQM 831

Query: 236 LSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 295
            +                                       P VIT  +++NG+ KMGR 
Sbjct: 832 QN-----------------------------------ANLMPTVITYTSLLNGYDKMGRR 856

Query: 296 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG----I 351
            E   V ++ +A     PD + ++ II   L  G   +AL L+ Q+  +     G    I
Sbjct: 857 AEMFPVFDEAIAAGI-EPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSI 915

Query: 352 VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLC-ESNQLDEA 405
            T  A+L G  ++  +E A++V   M+ +  + DS T   +I+  C  SNQ  EA
Sbjct: 916 STCRALLSGFAKVGEMEVAEKVMENMVRLQYIPDSATVIELINESCISSNQRVEA 970



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 109/493 (22%), Positives = 220/493 (44%), Gaps = 19/493 (3%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           +C    +  A+ +  +M + G  PNVV YTTLI  + +      A +V  EM+  G+ P+
Sbjct: 427 MCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPD 486

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
              Y+ L+ G+ + + ++ A   + ++ E       L  N   +   +            
Sbjct: 487 IFCYNSLIIGLSKAKRMDEARSFLVEMVEN-----GLKPNAFTYGAFISGYIEASEFASA 541

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            +  ++M +   +  +  C  +I+  C+  +   A      M  +G+     +Y  +++G
Sbjct: 542 DKYVKEMRECGVLPNKVLCTGLINEYCKKEKVIEACSAYRSMVDQGILGDAKTYTVLMNG 601

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           L K+     A ++  E    G  P   +Y VL+ G     +++KA  +   M+ +     
Sbjct: 602 LFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPN 661

Query: 244 TRICNIYLRALCL---IKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
             I N+ L   C    I+   ELL+    M      P+ +T  T+I+G+CK G + EA +
Sbjct: 662 VIIYNMLLGGFCRSGEIEKAKELLDE---MSVKGLHPNAVTYCTIIDGYCKSGDLAEAFR 718

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           + ++M   K   PD+  +TT++ G   +  ++ A+ +      ++G +     +NA++  
Sbjct: 719 LFDEMKL-KGLVPDSFVYTTLVDGCCRLNDVERAITIFGT--NKKGCASSTAPFNALINW 775

Query: 361 LFRLRRVEEAKEVFNCMLGIGV----VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416
           +F+  + E   EV N ++          +  TY I+ID LC+   L+ AK  +  +   +
Sbjct: 776 VFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNAN 835

Query: 417 NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAY 476
            +     Y +++ G  + G+  E      E + +G+ P+ + Y+V+I+   K  M  +A 
Sbjct: 836 LMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKAL 895

Query: 477 QILREM-RKNGLN 488
            ++ +M  KN ++
Sbjct: 896 VLVDQMFAKNAVD 908



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 112/481 (23%), Positives = 214/481 (44%), Gaps = 21/481 (4%)

Query: 26  VPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANV 85
           VP +     L+    R   +D+ + V+  M    V+ +  TY +L+    R  +V+    
Sbjct: 183 VPRLSRCKVLLDALLRWNRLDLFWDVYKGMVERNVVFDVKTYHMLIIAHCRAGNVQLGKD 242

Query: 86  LMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHM 145
           ++FK     KE    ++N                V+   ++ E M     V  ++    +
Sbjct: 243 VLFK---TEKEFRTATLN----------------VDGALKLKESMICKGLVPLKYTYDVL 283

Query: 146 IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY 205
           ID LC+  R   A  ++  M   G++    +Y+ ++ GL K      A  L+ E +  G 
Sbjct: 284 IDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEMVSHGI 343

Query: 206 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 265
               + Y   +  +  E  +EKA+ +   M++   + + +     +   C  KN  +   
Sbjct: 344 NIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYE 403

Query: 266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 325
           +LV M +        T  TV+ G C  G ++ A  ++ +M+A   C P+ V +TT+I   
Sbjct: 404 LLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASG-CRPNVVIYTTLIKTF 462

Query: 326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 385
           L   R  +A+ +L + M ++G +P I  YN+++ GL + +R++EA+     M+  G+  +
Sbjct: 463 LQNSRFGDAMRVLKE-MKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPN 521

Query: 386 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY 445
           + TY   I G  E+++   A ++  ++     + +  +   +I   C+  K+ EA     
Sbjct: 522 AFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKEKVIEACSAYR 581

Query: 446 ELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
            +VD G+  +   Y V+++G  K     +A +I REMR  G+ PD  ++ +L       G
Sbjct: 582 SMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLG 641

Query: 506 N 506
           N
Sbjct: 642 N 642



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 63/277 (22%), Positives = 116/277 (41%), Gaps = 47/277 (16%)

Query: 257 IKNPTELLNVLVFM-LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA 315
           + +P++LL+   ++  Q   +  + + + +    C  G  E+AL V+  M+   +  P A
Sbjct: 74  VDDPSKLLSFFNWVDSQKVTEQKLDSFSFLALDLCNFGSFEKALSVVERMIERNW--PVA 131

Query: 316 VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN 375
             +++I+       R  +            G S   V +  +  G      +EEA  VF+
Sbjct: 132 EVWSSIV-------RCSQEF---------VGKSDDGVLFGILFDGYIAKGYIEEAVFVFS 175

Query: 376 CMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD---DIVWPSNIHDNYVYAAMIKGLC 432
             +G+ +V   +   +++D L   N+LD    FWD    +V  + + D   Y  +I   C
Sbjct: 176 SSMGLELVPRLSRCKVLLDALLRWNRLD---LFWDVYKGMVERNVVFDVKTYHMLIIAHC 232

Query: 433 RSGKIHEAVHFLYE---------------------LVDSGVTPNIVCYNVVIDGACKLSM 471
           R+G +      L++                     ++  G+ P    Y+V+IDG CK+  
Sbjct: 233 RAGNVQLGKDVLFKTEKEFRTATLNVDGALKLKESMICKGLVPLKYTYDVLIDGLCKIKR 292

Query: 472 KREAYQILREMRKNGLNPDAVTWRIL-DKLHGNRGND 507
             +A  +L EM   G++ D  T+ +L D L   R  D
Sbjct: 293 LEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNAD 329


>gi|356564530|ref|XP_003550506.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g11690-like [Glycine max]
          Length = 556

 Score =  177 bits (450), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 126/493 (25%), Positives = 235/493 (47%), Gaps = 26/493 (5%)

Query: 22  SRGHVPNVVSYTTL----IHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRT 77
           ++ H  +  +YT L    ++ Y  +   D A      M H G  P S T++ L+  ++R+
Sbjct: 78  TQAHFTSCSTYTPLYDAIVNAYVHSHSTDQALTFLHHMIHEGHAPLSNTFNNLLCLLIRS 137

Query: 78  RDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVN 137
              ++A       W     +  + +N  +F  ++   C  GY   VFR+        +V 
Sbjct: 138 NYFDKA------WWIFNVLKSKVVLNAYSFGIMITGCCEAGYFVRVFRLL-------AVL 184

Query: 138 EEFACG-------HMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGC 190
           EEF           +ID  C++G    A  +   M + GL P+  +Y+ +++G  K G  
Sbjct: 185 EEFGLSPNVVIYTTLIDGCCKNGDVMLAKNLFCKMDRLGLVPNQHTYSVLMNGFFKQGLQ 244

Query: 191 MRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIY 250
              +Q+ E   + G +P+ + Y  L+   C +  ++KA KV   M  K         NI 
Sbjct: 245 REGFQMYENMNRSGIVPNAYAYNCLISEYCNDGMVDKAFKVFAEMREKGIACGVMTYNIL 304

Query: 251 LRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKF 310
           +  LC  K   E + ++  + +    P+++T N +INGFC +G+++ A+++ N + +   
Sbjct: 305 IGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVGKMDTAVRLFNQLKSSGL 364

Query: 311 CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEA 370
            +P  VT+ T+I G   V  +  AL+L+ + M +R  +   VTY  ++    RL   ++A
Sbjct: 365 -SPTLVTYNTLIAGYSKVENLAGALDLVKE-MEERCIARSKVTYTILIDAFARLNYTDKA 422

Query: 371 KEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKG 430
            E+ + M   G+V D  TY+++I G C +  + EA + +  +       ++ +Y  MI G
Sbjct: 423 CEMHSLMEKSGLVPDVYTYSVLIHGXCVNGNMKEASKPFKSLGEMHLQPNSVIYNTMIHG 482

Query: 431 LCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD 490
            C+ G  + A+  L E+V SG+ PN+  +   +   C+    +EA  +L +M  +GL P 
Sbjct: 483 YCKEGSSYRALRLLNEMVHSGMVPNVASFCSTMGLLCRDEKWKEAELLLGQMINSGLKPS 542

Query: 491 AVTWRILDKLHGN 503
              ++++ K+ G+
Sbjct: 543 VSLYKMVHKVKGD 555



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 105/384 (27%), Positives = 191/384 (49%), Gaps = 19/384 (4%)

Query: 15  KLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGV 74
           +L   ++  G  PNVV YTTLI G C+ G++ +A  +F +M   G++PN  TYSVL+ G 
Sbjct: 179 RLLAVLEEFGLSPNVVIYTTLIDGCCKNGDVMLAKNLFCKMDRLGLVPNQHTYSVLMNGF 238

Query: 75  LRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGK 134
            + + ++R     F+++E M     +  N  A+  L+   C +G V++ F++  +M +  
Sbjct: 239 FK-QGLQREG---FQMYENM-NRSGIVPNAYAYNCLISEYCNDGMVDKAFKVFAEMRE-- 291

Query: 135 SVNEEFACGHM-----IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG 189
              +  ACG M     I  LCR  +   A ++V+ + K GL+P++V+YN +++G C  G 
Sbjct: 292 ---KGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVGK 348

Query: 190 CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC-N 248
              A +L  +    G  P+  TY  L+ G     +L  A  +++ M  ++ + R+++   
Sbjct: 349 MDTAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEM-EERCIARSKVTYT 407

Query: 249 IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 308
           I + A   +    +   +   M ++   PDV T + +I+G C  G ++EA K    +   
Sbjct: 408 ILIDAFARLNYTDKACEMHSLMEKSGLVPDVYTYSVLIHGXCVNGNMKEASKPFKSL-GE 466

Query: 309 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE 368
               P++V + T+I G    G    AL LL + M   G  P + ++ + +  L R  + +
Sbjct: 467 MHLQPNSVIYNTMIHGYCKEGSSYRALRLLNE-MVHSGMVPNVASFCSTMGLLCRDEKWK 525

Query: 369 EAKEVFNCMLGIGVVADSTTYAIV 392
           EA+ +   M+  G+    + Y +V
Sbjct: 526 EAELLLGQMINSGLKPSVSLYKMV 549



 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 101/451 (22%), Positives = 200/451 (44%), Gaps = 43/451 (9%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           +A  +F  +KS+  V N  S+  +I G C  G     +++   +   G+ PN + Y+ L+
Sbjct: 142 KAWWIFNVLKSKV-VLNAYSFGIMITGCCEAGYFVRVFRLLAVLEEFGLSPNVVIYTTLI 200

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP 131
            G  +  DV  A  L  K+     +   L  N   ++ L++   ++G   E F++ E+M 
Sbjct: 201 DGCCKNGDVMLAKNLFCKM-----DRLGLVPNQHTYSVLMNGFFKQGLQREGFQMYENMN 255

Query: 132 QGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCM 191
           +   V   +A   +I   C  G    A +V   MR++G+   +++YN ++ GLC+     
Sbjct: 256 RSGIVPNAYAYNCLISEYCNDGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFG 315

Query: 192 RAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYL 251
            A +L+ +  + G  P+  TY +L+ G C    ++ A ++   + S              
Sbjct: 316 EAVKLVHKVNKVGLSPNIVTYNILINGFCDVGKMDTAVRLFNQLKS-------------- 361

Query: 252 RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC 311
                                +   P ++T NT+I G+ K+  +  AL ++ +M   +  
Sbjct: 362 ---------------------SGLSPTLVTYNTLIAGYSKVENLAGALDLVKEM-EERCI 399

Query: 312 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK 371
           A   VT+T +I     +    +A   ++ +M + G  P + TY+ ++ G      ++EA 
Sbjct: 400 ARSKVTYTILIDAFARLNYTDKACE-MHSLMEKSGLVPDVYTYSVLIHGXCVNGNMKEAS 458

Query: 372 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 431
           + F  +  + +  +S  Y  +I G C+      A R  +++V    + +   + + +  L
Sbjct: 459 KPFKSLGEMHLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVHSGMVPNVASFCSTMGLL 518

Query: 432 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVV 462
           CR  K  EA   L ++++SG+ P++  Y +V
Sbjct: 519 CRDEKWKEAELLLGQMINSGLKPSVSLYKMV 549



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 88/357 (24%), Positives = 163/357 (45%), Gaps = 7/357 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C    V  A  LF  M   G VPN  +Y+ L++G+ + G     +++++ M   G+
Sbjct: 200 IDGCCKNGDVMLAKNLFCKMDRLGLVPNQHTYSVLMNGFFKQGLQREGFQMYENMNRSGI 259

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +PN+  Y+ L+        V++A    FK++  M+ E+ ++     +  L+  LCR    
Sbjct: 260 VPNAYAYNCLISEYCNDGMVDKA----FKVFAEMR-EKGIACGVMTYNILIGGLCRGKKF 314

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E  ++   + +            +I+  C  G+   A R+   ++  GL+P+LV+YN++
Sbjct: 315 GEAVKLVHKVNKVGLSPNIVTYNILINGFCDVGKMDTAVRLFNQLKSSGLSPTLVTYNTL 374

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G  K      A  L++E  +     S+ TY +L++     +  +KA ++   M     
Sbjct: 375 IAGYSKVENLAGALDLVKEMEERCIARSKVTYTILIDAFARLNYTDKACEMHSLMEKSGL 434

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           V      ++ +   C+  N  E       + +   QP+ +  NT+I+G+CK G    AL+
Sbjct: 435 VPDVYTYSVLIHGXCVNGNMKEASKPFKSLGEMHLQPNSVIYNTMIHGYCKEGSSYRALR 494

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           +LN+MV      P+  +F + +  L    + +EA  LL Q M   G  P +  Y  V
Sbjct: 495 LLNEMVHSGM-VPNVASFCSTMGLLCRDEKWKEAELLLGQ-MINSGLKPSVSLYKMV 549



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 102/216 (47%), Gaps = 8/216 (3%)

Query: 293 GRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIV 352
           GRI  +L +         C+     +  I+   ++     +AL  L+  M   G++P   
Sbjct: 67  GRIPSSLMLQLTQAHFTSCSTYTPLYDAIVNAYVHSHSTDQALTFLHH-MIHEGHAPLSN 125

Query: 353 TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFW--- 409
           T+N +L  L R    ++A  +FN +L   VV ++ ++ I+I G CE+       R     
Sbjct: 126 TFNNLLCLLIRSNYFDKAWWIFN-VLKSKVVLNAYSFGIMITGCCEAGYFVRVFRLLAVL 184

Query: 410 DDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKL 469
           ++     N+    +Y  +I G C++G +  A +   ++   G+ PN   Y+V+++G  K 
Sbjct: 185 EEFGLSPNV---VIYTTLIDGCCKNGDVMLAKNLFCKMDRLGLVPNQHTYSVLMNGFFKQ 241

Query: 470 SMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
            ++RE +Q+   M ++G+ P+A  +  L   + N G
Sbjct: 242 GLQREGFQMYENMNRSGIVPNAYAYNCLISEYCNDG 277


>gi|357449261|ref|XP_003594907.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483955|gb|AES65158.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1385

 Score =  177 bits (450), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 137/529 (25%), Positives = 243/529 (45%), Gaps = 35/529 (6%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   +   A  L   M   GH P  V+Y TL++ YC+ G    A ++ D M   G+
Sbjct: 186 LNALCERGKFKSAGVLLRKMDETGHFPTAVTYNTLLNWYCKKGRYKAASELIDAMASKGI 245

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             +  TY+VL+  + R     +  +++ ++ + M    +++ N      L++ L +EG +
Sbjct: 246 AADVCTYNVLIDDLCRKSRSAKGYLILRRMRKNMVYPNEITYN-----TLINGLVKEGKI 300

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
               ++ E+M     +        +I   C +G    A R+  VM   GL P+ V+Y ++
Sbjct: 301 GVATKVFEEMSLCNLLPNSVTYNTLIFGHCSNGNIEEALRLCDVMVSHGLRPNEVTYGAL 360

Query: 181 VHGLCKHGGCMRAYQLLE----EGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFML 236
           ++G+ KH        +LE    +G++ G++    +Y  +++GLC    LE+A ++L  ML
Sbjct: 361 LNGISKHAQFGLVSSVLERMRMDGVRVGHI----SYTTMIDGLCKNGLLEEAVQLLDDML 416

Query: 237 ----SKKDVDRTRICNIYLRA---------------LCLIKNPTELLNVLVFMLQTQCQP 277
               S   V  + + N +L+                 C + N  E LN    M Q+    
Sbjct: 417 KVSVSPDIVTFSVLVNGFLKTGLVPNRVLHSTLIYNYCKMGNLKEALNAYAVMNQSGHVS 476

Query: 278 DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNL 337
           D  T + ++  FC+ GR+EEA +   D ++    AP +VTF  II    N G   +A + 
Sbjct: 477 DHFTSSVLVASFCRCGRLEEA-EYFVDHMSRMGLAPSSVTFDCIIDTYGNSGDALKAFS- 534

Query: 338 LYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLC 397
           ++  M   G+ P   TY  +L+GL     + EAK   +    I     ST Y  ++    
Sbjct: 535 VFDKMNSLGHLPSQFTYEGLLKGLLIGGHINEAKIFMHRPSSIPYAIGSTFYNTMLTLTS 594

Query: 398 ESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG-VTPNI 456
            S  L  A    D++V  + + D++ Y ++I GLCR GK+  A+      ++ G ++PN 
Sbjct: 595 RSGNLSNAVALLDEMVMNNFVPDSFTYTSLIAGLCRKGKMVPALLLSGRAIEKGLLSPNP 654

Query: 457 VCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
             Y  ++DG  K    + A  +  +M   G+ PDA+ + +L   +  +G
Sbjct: 655 AMYTSLVDGLLKEGHSKAALYMFEDMLNEGVQPDAIAFNVLLDRYSRKG 703



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 112/471 (23%), Positives = 216/471 (45%), Gaps = 28/471 (5%)

Query: 30  VSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFK 89
           +SYTT+I G C+ G ++ A ++ D+M    V P+ +T+SVLV G L+T            
Sbjct: 390 ISYTTMIDGLCKNGLLEEAVQLLDDMLKVSVSPDIVTFSVLVNGFLKT------------ 437

Query: 90  LWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSL 149
                     L  N    + L+ + C+ G + E       M Q   V++ F    ++ S 
Sbjct: 438 ---------GLVPNRVLHSTLIYNYCKMGNLKEALNAYAVMNQSGHVSDHFTSSVLVASF 488

Query: 150 CRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSE 209
           CR GR   A   V  M + GL PS V+++ I+      G  ++A+ + ++    G+LPS+
Sbjct: 489 CRCGRLEEAEYFVDHMSRMGLAPSSVTFDCIIDTYGNSGDALKAFSVFDKMNSLGHLPSQ 548

Query: 210 HTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVF 269
            TY+ L++GL     + +A+    FM     +        Y   L L      L N +  
Sbjct: 549 FTYEGLLKGLLIGGHINEAK---IFMHRPSSIPYAIGSTFYNTMLTLTSRSGNLSNAVAL 605

Query: 270 ---MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
              M+     PD  T  ++I G C+ G++  AL +    +     +P+   +T+++ GLL
Sbjct: 606 LDEMVMNNFVPDSFTYTSLIAGLCRKGKMVPALLLSGRAIEKGLLSPNPAMYTSLVDGLL 665

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
             G  + AL  +++ M   G  P  + +N +L    R  ++ +  ++ + M    +  + 
Sbjct: 666 KEGHSKAAL-YMFEDMLNEGVQPDAIAFNVLLDRYSRKGKMSKVNDILSTMRSRSLCFNL 724

Query: 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE 446
            TY I++ G  + + +    + +++++      D   + ++I G C+SG +  AV FL +
Sbjct: 725 ATYNILLHGYSKRHGMARCSKLYNEMIIHGFAPDRLTWHSLILGYCKSGSLDVAVKFLRK 784

Query: 447 LVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           +   G   +    NV++   C+ +  + A+ +++++   G+ P+  T+  L
Sbjct: 785 ITVEGFKVDCFTLNVLVSKLCERNEIKMAFDLVKQLNMLGVTPNVDTYNSL 835



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 127/458 (27%), Positives = 211/458 (46%), Gaps = 9/458 (1%)

Query: 32   YTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLW 91
            Y T++    R+G +  A  + DEM     +P+S TY+ L+ G+ R   +    V    L 
Sbjct: 586  YNTMLTLTSRSGNLSNAVALLDEMVMNNFVPDSFTYTSLIAGLCRKGKM----VPALLLS 641

Query: 92   ERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCR 151
             R  E+  LS N A + +LVD L +EG+      + EDM       +  A   ++D   R
Sbjct: 642  GRAIEKGLLSPNPAMYTSLVDGLLKEGHSKAALYMFEDMLNEGVQPDAIAFNVLLDRYSR 701

Query: 152  SGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHT 211
             G+    + ++  MR R L  +L +YN ++HG  K  G  R  +L  E I  G+ P   T
Sbjct: 702  KGKMSKVNDILSTMRSRSLCFNLATYNILLHGYSKRHGMARCSKLYNEMIIHGFAPDRLT 761

Query: 212  YKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFML 271
            +  L+ G C    L+ A K L+ +  +         N+ +  LC  +N  ++   LV  L
Sbjct: 762  WHSLILGYCKSGSLDVAVKFLRKITVEGFKVDCFTLNVLVSKLCE-RNEIKMAFDLVKQL 820

Query: 272  QT-QCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR 330
                  P+V T N++ NGF +    +EA  +L+ ++   + AP    FTT+I G+  +G 
Sbjct: 821  NMLGVTPNVDTYNSLFNGFVRTCSFDEARCILHALLENGY-APTCKQFTTLIRGMCRMGN 879

Query: 331  IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYA 390
            ++ A+ L  + M   G S   V  +A++RGL R R+ +EA  +   ML + ++    T+ 
Sbjct: 880  VKGAMELQDE-MKILGVSSQGVAMSAIIRGLARSRKTDEATRILGIMLEMQIIPTVATFT 938

Query: 391  IVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 450
             ++   C+   + +A      +       D   Y  +I GLC  G I  A     E+   
Sbjct: 939  TLMHTYCKEGNVAKALELRSVMEQCHVKLDVAAYNVLISGLCADGDIQAAFKLYEEMEQR 998

Query: 451  GVTPNIVCYNVVIDG-ACKLSMKREAYQILREMRKNGL 487
             + PN   Y V+ID   C  +   E+ ++LR++R   L
Sbjct: 999  DIWPNTSIYIVLIDSFLCTGNYIVESEKLLRDLRTREL 1036



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 128/507 (25%), Positives = 225/507 (44%), Gaps = 26/507 (5%)

Query: 10  VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSV 69
           VG+A + F  M  RG  P+V +   ++    +  E+D+ +  F EM    V PN  T+++
Sbjct: 125 VGDAVEAFRLMGFRGFSPSVFTCNMVLGSLVKDREVDLFWSFFKEMIANRVSPNVATFNI 184

Query: 70  LVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAED 129
           L+  +      + A VL+ K+ E       ++ N      L++  C++G       + + 
Sbjct: 185 LLNALCERGKFKSAGVLLRKMDETGHFPTAVTYNT-----LLNWYCKKGRYKAASELIDA 239

Query: 130 MPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG 189
           M       +      +ID LCR  R+     ++  MRK  + P+ ++YN++++GL K G 
Sbjct: 240 MASKGIAADVCTYNVLIDDLCRKSRSAKGYLILRRMRKNMVYPNEITYNTLINGLVKEGK 299

Query: 190 CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNI 249
              A ++ EE      LP+  TY  L+ G C   ++E+A ++   M+S            
Sbjct: 300 IGVATKVFEEMSLCNLLPNSVTYNTLIFGHCSNGNIEEALRLCDVMVSHGLRPNEVTYGA 359

Query: 250 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK 309
            L  +        + +VL  M     +   I+  T+I+G CK G +EEA+++L+DM+   
Sbjct: 360 LLNGISKHAQFGLVSSVLERMRMDGVRVGHISYTTMIDGLCKNGLLEEAVQLLDDMLKVS 419

Query: 310 FCAPDAVTFTTIIFGLL-------------------NVGRIQEALNLLYQVMPQRGYSPG 350
             +PD VTF+ ++ G L                    +G ++EALN  Y VM Q G+   
Sbjct: 420 -VSPDIVTFSVLVNGFLKTGLVPNRVLHSTLIYNYCKMGNLKEALN-AYAVMNQSGHVSD 477

Query: 351 IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD 410
             T + ++    R  R+EEA+   + M  +G+   S T+  +ID    S    +A   +D
Sbjct: 478 HFTSSVLVASFCRCGRLEEAEYFVDHMSRMGLAPSSVTFDCIIDTYGNSGDALKAFSVFD 537

Query: 411 DIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLS 470
            +    ++   + Y  ++KGL   G I+EA  F++             YN ++    +  
Sbjct: 538 KMNSLGHLPSQFTYEGLLKGLLIGGHINEAKIFMHRPSSIPYAIGSTFYNTMLTLTSRSG 597

Query: 471 MKREAYQILREMRKNGLNPDAVTWRIL 497
               A  +L EM  N   PD+ T+  L
Sbjct: 598 NLSNAVALLDEMVMNNFVPDSFTYTSL 624



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 113/496 (22%), Positives = 209/496 (42%), Gaps = 8/496 (1%)

Query: 3   QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
             C   R+ EA      M   G  P+ V++  +I  Y  +G+   A+ VFD+M   G LP
Sbjct: 487 SFCRCGRLEEAEYFVDHMSRMGLAPSSVTFDCIIDTYGNSGDALKAFSVFDKMNSLGHLP 546

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           +  TY  L++G+L    +  A + M +           ++ +  +  ++    R G ++ 
Sbjct: 547 SQFTYEGLLKGLLIGGHINEAKIFMHR-----PSSIPYAIGSTFYNTMLTLTSRSGNLSN 601

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGL-TPSLVSYNSIV 181
              + ++M     V + F    +I  LCR G+   A  +     ++GL +P+   Y S+V
Sbjct: 602 AVALLDEMVMNNFVPDSFTYTSLIAGLCRKGKMVPALLLSGRAIEKGLLSPNPAMYTSLV 661

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
            GL K G    A  + E+ +  G  P    + VL++    +  + K   +L  M S+   
Sbjct: 662 DGLLKEGHSKAALYMFEDMLNEGVQPDAIAFNVLLDRYSRKGKMSKVNDILSTMRSRSLC 721

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
                 NI L              +   M+     PD +T +++I G+CK G ++ A+K 
Sbjct: 722 FNLATYNILLHGYSKRHGMARCSKLYNEMIIHGFAPDRLTWHSLILGYCKSGSLDVAVKF 781

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
           L  +    F   D  T   ++  L     I+ A +L+ Q +   G +P + TYN++  G 
Sbjct: 782 LRKITVEGF-KVDCFTLNVLVSKLCERNEIKMAFDLVKQ-LNMLGVTPNVDTYNSLFNGF 839

Query: 362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
            R    +EA+ + + +L  G       +  +I G+C    +  A    D++         
Sbjct: 840 VRTCSFDEARCILHALLENGYAPTCKQFTTLIRGMCRMGNVKGAMELQDEMKILGVSSQG 899

Query: 422 YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
              +A+I+GL RS K  EA   L  +++  + P +  +  ++   CK     +A ++   
Sbjct: 900 VAMSAIIRGLARSRKTDEATRILGIMLEMQIIPTVATFTTLMHTYCKEGNVAKALELRSV 959

Query: 482 MRKNGLNPDAVTWRIL 497
           M +  +  D   + +L
Sbjct: 960 MEQCHVKLDVAAYNVL 975



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 83/345 (24%), Positives = 151/345 (43%), Gaps = 19/345 (5%)

Query: 16   LFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVL 75
            +F DM + G  P+ +++  L+  Y R G+M     +   MR   +  N  TY++L+ G  
Sbjct: 676  MFEDMLNEGVQPDAIAFNVLLDRYSRKGKMSKVNDILSTMRSRSLCFNLATYNILLHGYS 735

Query: 76   RTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKS 135
            +   + R +    KL+  M      + +   + +L+   C+ G ++   +    +     
Sbjct: 736  KRHGMARCS----KLYNEMI-IHGFAPDRLTWHSLILGYCKSGSLDVAVKFLRKITVEGF 790

Query: 136  VNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQ 195
              + F    ++  LC       A  +V  +   G+TP++ +YNS+ +G  +      A  
Sbjct: 791  KVDCFTLNVLVSKLCERNEIKMAFDLVKQLNMLGVTPNVDTYNSLFNGFVRTCSFDEARC 850

Query: 196  LLEEGIQFGYLPSEHTYKVLVEGLC------GESDLEKARKVLQFMLSKKDVDRTRICNI 249
            +L   ++ GY P+   +  L+ G+C      G  +L+   K+L   +S + V  + I   
Sbjct: 851  ILHALLENGYAPTCKQFTTLIRGMCRMGNVKGAMELQDEMKILG--VSSQGVAMSAI--- 905

Query: 250  YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK 309
             +R L   +   E   +L  ML+ Q  P V T  T+++ +CK G + +AL+ L  ++   
Sbjct: 906  -IRGLARSRKTDEATRILGIMLEMQIIPTVATFTTLMHTYCKEGNVAKALE-LRSVMEQC 963

Query: 310  FCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTY 354
                D   +  +I GL   G IQ A   LY+ M QR   P    Y
Sbjct: 964  HVKLDVAAYNVLISGLCADGDIQAAFK-LYEEMEQRDIWPNTSIY 1007



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 115/262 (43%), Gaps = 41/262 (15%)

Query: 15   KLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYK------------------------ 50
            KL+ +M   G  P+ +++ +LI GYC++G +DVA K                        
Sbjct: 745  KLYNEMIIHGFAPDRLTWHSLILGYCKSGSLDVAVKFLRKITVEGFKVDCFTLNVLVSKL 804

Query: 51   --------VFD---EMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEED 99
                     FD   ++   GV PN  TY+ L  G +RT   + A  ++  L      E  
Sbjct: 805  CERNEIKMAFDLVKQLNMLGVTPNVDTYNSLFNGFVRTCSFDEARCILHALL-----ENG 859

Query: 100  LSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGAS 159
             +     F  L+  +CR G V     + ++M      ++  A   +I  L RS +   A+
Sbjct: 860  YAPTCKQFTTLIRGMCRMGNVKGAMELQDEMKILGVSSQGVAMSAIIRGLARSRKTDEAT 919

Query: 160  RVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGL 219
            R++ +M +  + P++ ++ +++H  CK G   +A +L     Q         Y VL+ GL
Sbjct: 920  RILGIMLEMQIIPTVATFTTLMHTYCKEGNVAKALELRSVMEQCHVKLDVAAYNVLISGL 979

Query: 220  CGESDLEKARKVLQFMLSKKDV 241
            C + D++ A K+ + M  ++D+
Sbjct: 980  CADGDIQAAFKLYEEM-EQRDI 1000



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/339 (20%), Positives = 138/339 (40%), Gaps = 7/339 (2%)

Query: 1    MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
            +D+     ++ + + +   M+SR    N+ +Y  L+HGY +   M    K+++EM   G 
Sbjct: 696  LDRYSRKGKMSKVNDILSTMRSRSLCFNLATYNILLHGYSKRHGMARCSKLYNEMIIHGF 755

Query: 61   LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             P+ LT+  L+ G  ++  ++ A   + K+       E   V+      LV  LC    +
Sbjct: 756  APDRLTWHSLILGYCKSGSLDVAVKFLRKI-----TVEGFKVDCFTLNVLVSKLCERNEI 810

Query: 121  NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
               F + + +              + +   R+     A  +++ + + G  P+   + ++
Sbjct: 811  KMAFDLVKQLNMLGVTPNVDTYNSLFNGFVRTCSFDEARCILHALLENGYAPTCKQFTTL 870

Query: 181  VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
            + G+C+ G    A +L +E    G          ++ GL      ++A ++L  ML  + 
Sbjct: 871  IRGMCRMGNVKGAMELQDEMKILGVSSQGVAMSAIIRGLARSRKTDEATRILGIMLEMQI 930

Query: 241  VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
            +         +   C   N  + L +   M Q   + DV   N +I+G C  G I+ A K
Sbjct: 931  IPTVATFTTLMHTYCKEGNVAKALELRSVMEQCHVKLDVAAYNVLISGLCADGDIQAAFK 990

Query: 301  VLNDMVAGKFCAPDAVTFTTIIFGLLNVGR-IQEALNLL 338
            +  +M   +   P+   +  +I   L  G  I E+  LL
Sbjct: 991  LYEEM-EQRDIWPNTSIYIVLIDSFLCTGNYIVESEKLL 1028



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 107/234 (45%), Gaps = 6/234 (2%)

Query: 1    MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
            + +LC  + +  A  L   +   G  PNV +Y +L +G+ RT   D A  +   +   G 
Sbjct: 801  VSKLCERNEIKMAFDLVKQLNMLGVTPNVDTYNSLFNGFVRTCSFDEARCILHALLENGY 860

Query: 61   LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             P    ++ L+RG+ R  +V+ A     +L + MK    +S    A + ++  L R    
Sbjct: 861  APTCKQFTTLIRGMCRMGNVKGA----MELQDEMK-ILGVSSQGVAMSAIIRGLARSRKT 915

Query: 121  NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +E  RI   M + + +        ++ + C+ G    A  +  VM +  +   + +YN +
Sbjct: 916  DEATRILGIMLEMQIIPTVATFTTLMHTYCKEGNVAKALELRSVMEQCHVKLDVAAYNVL 975

Query: 181  VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEG-LCGESDLEKARKVLQ 233
            + GLC  G    A++L EE  Q    P+   Y VL++  LC  + + ++ K+L+
Sbjct: 976  ISGLCADGDIQAAFKLYEEMEQRDIWPNTSIYIVLIDSFLCTGNYIVESEKLLR 1029



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 94/213 (44%), Gaps = 46/213 (21%)

Query: 338 LYQVMPQRGYSPGIVTYNAVL-----RGLFR-----LRRVEE------------------ 369
            ++ M     SP + T+N +L     RG F+     LR+++E                  
Sbjct: 166 FFKEMIANRVSPNVATFNILLNALCERGKFKSAGVLLRKMDETGHFPTAVTYNTLLNWYC 225

Query: 370 -------AKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA----KRFWDDIVWPSNI 418
                  A E+ + M   G+ AD  TY ++ID LC  ++  +     +R   ++V+P+ I
Sbjct: 226 KKGRYKAASELIDAMASKGIAADVCTYNVLIDDLCRKSRSAKGYLILRRMRKNMVYPNEI 285

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI 478
                Y  +I GL + GKI  A     E+    + PN V YN +I G C      EA ++
Sbjct: 286 ----TYNTLINGLVKEGKIGVATKVFEEMSLCNLLPNSVTYNTLIFGHCSNGNIEEALRL 341

Query: 479 LREMRKNGLNPDAVTWRILDKLHG-NRGNDFGL 510
              M  +GL P+ VT+  L  L+G ++   FGL
Sbjct: 342 CDVMVSHGLRPNEVTYGAL--LNGISKHAQFGL 372



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 84/189 (44%), Gaps = 6/189 (3%)

Query: 12   EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
            EA  +   +   G+ P    +TTLI G CR G +  A ++ DEM+  GV    +  S ++
Sbjct: 847  EARCILHALLENGYAPTCKQFTTLIRGMCRMGNVKGAMELQDEMKILGVSSQGVAMSAII 906

Query: 72   RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP 131
            RG+ R+R  + A  ++  + E       +    A F  L+ + C+EG V +   +   M 
Sbjct: 907  RGLARSRKTDEATRILGIMLEM-----QIIPTVATFTTLMHTYCKEGNVAKALELRSVME 961

Query: 132  QGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG-LCKHGGC 190
            Q     +  A   +I  LC  G    A ++   M +R + P+   Y  ++   LC     
Sbjct: 962  QCHVKLDVAAYNVLISGLCADGDIQAAFKLYEEMEQRDIWPNTSIYIVLIDSFLCTGNYI 1021

Query: 191  MRAYQLLEE 199
            + + +LL +
Sbjct: 1022 VESEKLLRD 1030



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 68/129 (52%), Gaps = 9/129 (6%)

Query: 6    GLSR---VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
            GL+R     EA ++   M     +P V ++TTL+H YC+ G +  A ++   M  C V  
Sbjct: 908  GLARSRKTDEATRILGIMLEMQIIPTVATFTTLMHTYCKEGNVAKALELRSVMEQCHVKL 967

Query: 63   NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDS-LCREGYVN 121
            +   Y+VL+ G+    D++ A    FKL+E M E+ D+  N + +  L+DS LC   Y+ 
Sbjct: 968  DVAAYNVLISGLCADGDIQAA----FKLYEEM-EQRDIWPNTSIYIVLIDSFLCTGNYIV 1022

Query: 122  EVFRIAEDM 130
            E  ++  D+
Sbjct: 1023 ESEKLLRDL 1031


>gi|224086982|ref|XP_002308024.1| predicted protein [Populus trichocarpa]
 gi|222854000|gb|EEE91547.1| predicted protein [Populus trichocarpa]
          Length = 789

 Score =  177 bits (450), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 127/467 (27%), Positives = 223/467 (47%), Gaps = 29/467 (6%)

Query: 31  SYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKL 90
           ++  LI  Y + G  D A + F  MR     P+  TY++++  +++   +    +L   +
Sbjct: 128 AFFVLIKVYLKMGLTDKAMETFGSMRDFDCTPDVYTYNMILDVLIQKNFL----LLALTV 183

Query: 91  WERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC 150
           + RM +   L  N A F+ L+D LC+ G V +   + ++M Q   + + F    +I  LC
Sbjct: 184 YTRMMKLNCLP-NVATFSILIDGLCKSGNVKDALHLFDEMTQRGILPDAFTYCVVISGLC 242

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
           RS R   A R+   M+  G+ P  V+ N++++G C       A+ LL    + GY+    
Sbjct: 243 RSKRVDDAYRLFDKMKDSGVGPDFVTCNALLNGFCMLDRVDEAFSLLRLFEKDGYVLDVR 302

Query: 211 TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM 270
            Y  L+ GL      E  + + + M+         +  I ++ L       + L +L  M
Sbjct: 303 GYSCLIRGLFRAKRYEDVQLLYRKMIEDNVKPDVYLYTIMMKGLAEAGKVRDALELLNEM 362

Query: 271 LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR 330
            ++   PD +  N +I GFC MG + EA + L   ++   C P+  T++ +I G+   G 
Sbjct: 363 TESGVVPDTVCYNVLIKGFCDMGLLSEA-RSLQLEISRHDCFPNVKTYSILISGMCRNGL 421

Query: 331 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYA 390
            ++A   ++  M + G  P  VT+N+++ GL +  ++E+A  +F  M    +  + + + 
Sbjct: 422 TRDAQE-IFNEMEKLGCYPSAVTFNSLIDGLCKTGQLEKAHLLFYKM---EIGRNPSLFL 477

Query: 391 IVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 450
            +  G                   PS++ D+     M++ LC SG IH+A   L +L DS
Sbjct: 478 RLSQG-------------------PSHVLDSASLQKMVEQLCDSGLIHKAYRILMQLADS 518

Query: 451 GVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           G  P I  YN++++G CKL     AY++ REM+  GL+PD VT+  L
Sbjct: 519 GDAPGIYTYNILVNGFCKLGNFNGAYKLFREMQFKGLSPDTVTYGTL 565



 Score =  161 bits (408), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 118/434 (27%), Positives = 210/434 (48%), Gaps = 32/434 (7%)

Query: 26  VPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANV 85
           +PNV +++ LI G C++G +  A  +FDEM   G+LP++ TY V++ G+ R++ V+ A  
Sbjct: 193 LPNVATFSILIDGLCKSGNVKDALHLFDEMTQRGILPDAFTYCVVISGLCRSKRVDDA-- 250

Query: 86  LMFKLWERMKEE---EDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFAC 142
             ++L+++MK+     D    NA    L++  C    V+E F +     +   V +    
Sbjct: 251 --YRLFDKMKDSGVGPDFVTCNA----LLNGFCMLDRVDEAFSLLRLFEKDGYVLDVRGY 304

Query: 143 GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQ 202
             +I  L R+ R      +   M +  + P +  Y  ++ GL + G    A +LL E  +
Sbjct: 305 SCLIRGLFRAKRYEDVQLLYRKMIEDNVKPDVYLYTIMMKGLAEAGKVRDALELLNEMTE 364

Query: 203 FGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD-VDRTRICNIYLRALC---LIK 258
            G +P    Y VL++G C    L +AR  LQ  +S+ D     +  +I +  +C   L +
Sbjct: 365 SGVVPDTVCYNVLIKGFCDMGLLSEARS-LQLEISRHDCFPNVKTYSILISGMCRNGLTR 423

Query: 259 NPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCA------ 312
           +  E+ N    M +  C P  +T N++I+G CK G++E+A  +   M  G+  +      
Sbjct: 424 DAQEIFNE---MEKLGCYPSAVTFNSLIDGLCKTGQLEKAHLLFYKMEIGRNPSLFLRLS 480

Query: 313 --P----DAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 366
             P    D+ +   ++  L + G I +A  +L Q +   G +PGI TYN ++ G  +L  
Sbjct: 481 QGPSHVLDSASLQKMVEQLCDSGLIHKAYRILMQ-LADSGDAPGIYTYNILVNGFCKLGN 539

Query: 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAA 426
              A ++F  M   G+  D+ TY  +I+GL    + ++A + +D +       D  VY  
Sbjct: 540 FNGAYKLFREMQFKGLSPDTVTYGTLINGLLRFQREEDAYKVFDQMEKNGCTPDAAVYRT 599

Query: 427 MIKGLCRSGKIHEA 440
           M+  +CR  ++  A
Sbjct: 600 MMTWMCRRMELPRA 613



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 117/500 (23%), Positives = 211/500 (42%), Gaps = 107/500 (21%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    V +A  LF +M  RG +P+  +Y  +I G CR+  +D AY++FD+M+  GV
Sbjct: 203 IDGLCKSGNVKDALHLFDEMTQRGILPDAFTYCVVISGLCRSKRVDDAYRLFDKMKDSGV 262

Query: 61  LPNSLT-----------------------------------YSVLVRGVLRTRDVERANV 85
            P+ +T                                   YS L+RG+ R +  E   +
Sbjct: 263 GPDFVTCNALLNGFCMLDRVDEAFSLLRLFEKDGYVLDVRGYSCLIRGLFRAKRYEDVQL 322

Query: 86  LMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHM 145
           L  K+ E     +++  +   +  ++  L   G V +   +  +M +   V +      +
Sbjct: 323 LYRKMIE-----DNVKPDVYLYTIMMKGLAEAGKVRDALELLNEMTESGVVPDTVCYNVL 377

Query: 146 IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY 205
           I   C  G    A  +   + +    P++ +Y+ ++ G+C++G    A ++  E  + G 
Sbjct: 378 IKGFCDMGLLSEARSLQLEISRHDCFPNVKTYSILISGMCRNGLTRDAQEIFNEMEKLGC 437

Query: 206 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 265
            PS  T+  L++GLC    LEKA      +  K ++ R    +++LR   L + P+ +L+
Sbjct: 438 YPSAVTFNSLIDGLCKTGQLEKA----HLLFYKMEIGRNP--SLFLR---LSQGPSHVLD 488

Query: 266 ----------------------VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                                 +L+ +  +   P + T N ++NGFCK+G    A K+  
Sbjct: 489 SASLQKMVEQLCDSGLIHKAYRILMQLADSGDAPGIYTYNILVNGFCKLGNFNGAYKLFR 548

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           +M   K  +PD VT+ T+I GLL   R ++A  +  Q M + G +P    Y  ++  + R
Sbjct: 549 EM-QFKGLSPDTVTYGTLINGLLRFQREEDAYKVFDQ-MEKNGCTPDAAVYRTMMTWMCR 606

Query: 364 --------------LRRVE--------------EAKEVFNCMLGIGVVA------DSTTY 389
                         LR +               E +EV   + G+  +       D   Y
Sbjct: 607 RMELPRAFSLWLKYLRNIRSQEDEAIKAIEGYFEKQEVEKAVRGLLEMDFKLNDFDLGPY 666

Query: 390 AIVIDGLCESNQLDEAKRFW 409
           AI + GLC++ ++ EA + +
Sbjct: 667 AIWLIGLCQTRRVGEALKIF 686



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 93/382 (24%), Positives = 179/382 (46%), Gaps = 22/382 (5%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C +  + EA  L  ++      PNV +Y+ LI G CR G    A ++F+EM   G  P+
Sbjct: 381 FCDMGLLSEARSLQLEISRHDCFPNVKTYSILISGMCRNGLTRDAQEIFNEMEKLGCYPS 440

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFK--------LWERMKEEEDLSVNNAAFANLVDSLC 115
           ++T++ L+ G+ +T  +E+A++L +K        L+ R+ +     +++A+   +V+ LC
Sbjct: 441 AVTFNSLIDGLCKTGQLEKAHLLFYKMEIGRNPSLFLRLSQGPSHVLDSASLQKMVEQLC 500

Query: 116 REGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLV 175
             G +++ +RI   +         +    +++  C+ G  +GA ++   M+ +GL+P  V
Sbjct: 501 DSGLIHKAYRILMQLADSGDAPGIYTYNILVNGFCKLGNFNGAYKLFREMQFKGLSPDTV 560

Query: 176 SYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKA----RKV 231
           +Y ++++GL +      AY++ ++  + G  P    Y+ ++  +C   +L +A     K 
Sbjct: 561 TYGTLINGLLRFQREEDAYKVFDQMEKNGCTPDAAVYRTMMTWMCRRMELPRAFSLWLKY 620

Query: 232 LQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK 291
           L+ + S++D +  +    Y     + K    LL +   +      P  I L     G C+
Sbjct: 621 LRNIRSQED-EAIKAIEGYFEKQEVEKAVRGLLEMDFKLNDFDLGPYAIWL----IGLCQ 675

Query: 292 MGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALN-LLYQVMPQRGYSPG 350
             R+ EALK+   +   K           I F LL  G +  A++  LY +  ++GY   
Sbjct: 676 TRRVGEALKIFLILEEYKVVITPPCCVKLIYF-LLKEGDLDRAIDVFLYTI--EKGYLLR 732

Query: 351 IVTYNAVLRGLFRLRRVEEAKE 372
               N +L  L R R+ E  K+
Sbjct: 733 RRVANRILTKLVR-RKGEMGKD 753



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 123/231 (53%), Gaps = 4/231 (1%)

Query: 270 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG 329
           M    C PDV T N +++   +   +  AL V   M+    C P+  TF+ +I GL   G
Sbjct: 152 MRDFDCTPDVYTYNMILDVLIQKNFLLLALTVYTRMMKLN-CLPNVATFSILIDGLCKSG 210

Query: 330 RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTY 389
            +++AL+L +  M QRG  P   TY  V+ GL R +RV++A  +F+ M   GV  D  T 
Sbjct: 211 NVKDALHL-FDEMTQRGILPDAFTYCVVISGLCRSKRVDDAYRLFDKMKDSGVGPDFVTC 269

Query: 390 AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY-ELV 448
             +++G C  +++DEA            + D   Y+ +I+GL R+ K +E V  LY +++
Sbjct: 270 NALLNGFCMLDRVDEAFSLLRLFEKDGYVLDVRGYSCLIRGLFRA-KRYEDVQLLYRKMI 328

Query: 449 DSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
           +  V P++  Y +++ G  +    R+A ++L EM ++G+ PD V + +L K
Sbjct: 329 EDNVKPDVYLYTIMMKGLAEAGKVRDALELLNEMTESGVVPDTVCYNVLIK 379



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 121/266 (45%), Gaps = 30/266 (11%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++QLC    + +A+++   +   G  P + +Y  L++G+C+ G  + AYK+F EM+  G+
Sbjct: 496 VEQLCDSGLIHKAYRILMQLADSGDAPGIYTYNILVNGFCKLGNFNGAYKLFREMQFKGL 555

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+++TY  L+ G+LR +  E A    +K++++M E+   + + A +  ++  +CR   +
Sbjct: 556 SPDTVTYGTLINGLLRFQREEDA----YKVFDQM-EKNGCTPDAAVYRTMMTWMCRRMEL 610

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
              F +     +     E+ A    I+          A R +  M  +     L  Y   
Sbjct: 611 PRAFSLWLKYLRNIRSQEDEAI-KAIEGYFEKQEVEKAVRGLLEMDFKLNDFDLGPYAIW 669

Query: 181 VHGLCKH---GGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLC---------GESDLEKA 228
           + GLC+    G  ++ + +LEE            YKV++   C          E DL++A
Sbjct: 670 LIGLCQTRRVGEALKIFLILEE------------YKVVITPPCCVKLIYFLLKEGDLDRA 717

Query: 229 RKVLQFMLSKKDVDRTRICNIYLRAL 254
             V  + + K  + R R+ N  L  L
Sbjct: 718 IDVFLYTIEKGYLLRRRVANRILTKL 743


>gi|225424625|ref|XP_002282301.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
           mitochondrial [Vitis vinifera]
 gi|296081374|emb|CBI16807.3| unnamed protein product [Vitis vinifera]
          Length = 519

 Score =  177 bits (450), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 117/468 (25%), Positives = 226/468 (48%), Gaps = 7/468 (1%)

Query: 30  VSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFK 89
           ++Y   I  Y + G +D A K FDEM        S+ Y+  +  ++R    + A     +
Sbjct: 10  LAYRAQISSYVKAGLIDQALKTFDEMTKSNCRVFSIDYNRFIGVLVRQSRFDLAE----Q 65

Query: 90  LWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSL 149
            ++RM  +   S+N+  ++  +  LC+      + ++ EDM +   V + +A    ++ L
Sbjct: 66  YYDRMIPQ-GFSLNSFTYSRFISGLCKVKNFVLIEKLLEDMDRLGYVPDIWAYNIYLNLL 124

Query: 150 CRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSE 209
           C   +   A  VV  M ++G  P +V+Y  +++GLC+ G    A ++    ++ G+ P E
Sbjct: 125 CCENQLDVALGVVQTMVEKGREPDIVTYTIVINGLCRAGRFDSAVEIWRNMVRKGFSPDE 184

Query: 210 HTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVF 269
              + LV GLC +  ++ A ++    +  +      I N  +   C      +  +++ F
Sbjct: 185 KACRALVLGLCHDGKVDLAYELTVGAMRGRIKFSKSIYNSLINGFCQAGWIDKAQSIISF 244

Query: 270 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG 329
           M +  C+PD++T N ++N  C    +EEA  ++  M       PD  ++  ++ GL    
Sbjct: 245 MRRNGCEPDLVTYNVLLNYCCDELLLEEAENLMKKMERSGV-EPDVYSYNELLKGLCKAN 303

Query: 330 RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTY 389
           R+ +A  ++   M  +G    +V+YN +++ L      + A ++F  M G G+  D  T+
Sbjct: 304 RLDKAYMMMVNKMEAKGLCD-VVSYNTIIKALCTASHTKRAYKLFEEMGGKGITPDVVTF 362

Query: 390 AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449
            I+I         + AK+  D +     + D  +Y  ++  LC++GK+  A     ++V+
Sbjct: 363 TILIKAFLREGSSNIAKKLLDQMTGLGLLPDRVLYTTIVDHLCKTGKMGMAHSVFCDMVE 422

Query: 450 SGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           SG+TP++V YN +I+G C+ S   EA  +  +M   G  PD VT++++
Sbjct: 423 SGITPDVVSYNALINGLCRASRVSEAMHLYEDMHTGGPCPDEVTFKLI 470



 Score =  168 bits (425), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 126/496 (25%), Positives = 231/496 (46%), Gaps = 10/496 (2%)

Query: 10  VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSV 69
           + +A K F +M         + Y   I    R    D+A + +D M   G   NS TYS 
Sbjct: 25  IDQALKTFDEMTKSNCRVFSIDYNRFIGVLVRQSRFDLAEQYYDRMIPQGFSLNSFTYSR 84

Query: 70  LVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAED 129
            + G+ + ++     VL+ KL E M +      +  A+   ++ LC E  ++    + + 
Sbjct: 85  FISGLCKVKNF----VLIEKLLEDM-DRLGYVPDIWAYNIYLNLLCCENQLDVALGVVQT 139

Query: 130 MPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG 189
           M +     +      +I+ LCR+GR   A  +   M ++G +P   +  ++V GLC  G 
Sbjct: 140 MVEKGREPDIVTYTIVINGLCRAGRFDSAVEIWRNMVRKGFSPDEKACRALVLGLCHDGK 199

Query: 190 CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNI 249
              AY+L    ++     S+  Y  L+ G C    ++KA+ ++ FM            N+
Sbjct: 200 VDLAYELTVGAMRGRIKFSKSIYNSLINGFCQAGWIDKAQSIISFMRRNGCEPDLVTYNV 259

Query: 250 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA-LKVLNDMVAG 308
            L   C      E  N++  M ++  +PDV + N ++ G CK  R+++A + ++N M A 
Sbjct: 260 LLNYCCDELLLEEAENLMKKMERSGVEPDVYSYNELLKGLCKANRLDKAYMMMVNKMEAK 319

Query: 309 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE 368
             C  D V++ TII  L      + A  L ++ M  +G +P +VT+  +++   R     
Sbjct: 320 GLC--DVVSYNTIIKALCTASHTKRAYKL-FEEMGGKGITPDVVTFTILIKAFLREGSSN 376

Query: 369 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI 428
            AK++ + M G+G++ D   Y  ++D LC++ ++  A   + D+V      D   Y A+I
Sbjct: 377 IAKKLLDQMTGLGLLPDRVLYTTIVDHLCKTGKMGMAHSVFCDMVESGITPDVVSYNALI 436

Query: 429 KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLN 488
            GLCR+ ++ EA+H   ++   G  P+ V + ++I G         A ++  +M + G  
Sbjct: 437 NGLCRASRVSEAMHLYEDMHTGGPCPDEVTFKLIIGGLIWEKKLSVACRVWDQMMEKGFT 496

Query: 489 PD-AVTWRILDKLHGN 503
            D AV+  +++ +H N
Sbjct: 497 LDGAVSETLVNAIHSN 512



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 114/428 (26%), Positives = 199/428 (46%), Gaps = 7/428 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC +       KL  DM   G+VP++ +Y   ++  C   ++DVA  V   M   G  P+
Sbjct: 89  LCKVKNFVLIEKLLEDMDRLGYVPDIWAYNIYLNLLCCENQLDVALGVVQTMVEKGREPD 148

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY++++ G+ R    + A     ++W  M   +  S +  A   LV  LC +G V+  
Sbjct: 149 IVTYTIVINGLCRAGRFDSA----VEIWRNMV-RKGFSPDEKACRALVLGLCHDGKVDLA 203

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           + +     +G+    +     +I+  C++G    A  ++  MR+ G  P LV+YN +++ 
Sbjct: 204 YELTVGAMRGRIKFSKSIYNSLINGFCQAGWIDKAQSIISFMRRNGCEPDLVTYNVLLNY 263

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            C       A  L+++  + G  P  ++Y  L++GLC  + L+KA  ++   +  K +  
Sbjct: 264 CCDELLLEEAENLMKKMERSGVEPDVYSYNELLKGLCKANRLDKAYMMMVNKMEAKGLCD 323

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               N  ++ALC   +      +   M      PDV+T   +I  F + G    A K+L+
Sbjct: 324 VVSYNTIIKALCTASHTKRAYKLFEEMGGKGITPDVVTFTILIKAFLREGSSNIAKKLLD 383

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            M  G    PD V +TTI+  L   G++  A ++    M + G +P +V+YNA++ GL R
Sbjct: 384 QM-TGLGLLPDRVLYTTIVDHLCKTGKMGMAHSVFCD-MVESGITPDVVSYNALINGLCR 441

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
             RV EA  ++  M   G   D  T+ ++I GL    +L  A R WD ++      D  V
Sbjct: 442 ASRVSEAMHLYEDMHTGGPCPDEVTFKLIIGGLIWEKKLSVACRVWDQMMEKGFTLDGAV 501

Query: 424 YAAMIKGL 431
              ++  +
Sbjct: 502 SETLVNAI 509



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 97/402 (24%), Positives = 179/402 (44%), Gaps = 39/402 (9%)

Query: 106 AFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVM 165
           A+   + S  + G +++  +  ++M +             I  L R  R   A +    M
Sbjct: 11  AYRAQISSYVKAGLIDQALKTFDEMTKSNCRVFSIDYNRFIGVLVRQSRFDLAEQYYDRM 70

Query: 166 RKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDL 225
             +G + +  +Y+  + GLCK    +   +LLE+  + GY+P    Y + +  LC E+ L
Sbjct: 71  IPQGFSLNSFTYSRFISGLCKVKNFVLIEKLLEDMDRLGYVPDIWAYNIYLNLLCCENQL 130

Query: 226 EKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTV 285
           + A  V+Q M+ K                                     +PD++T   V
Sbjct: 131 DVALGVVQTMVEKGR-----------------------------------EPDIVTYTIV 155

Query: 286 INGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQR 345
           ING C+ GR + A+++  +MV   F +PD      ++ GL + G++  A  L    M  R
Sbjct: 156 INGLCRAGRFDSAVEIWRNMVRKGF-SPDEKACRALVLGLCHDGKVDLAYELTVGAMRGR 214

Query: 346 -GYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 404
             +S  I  YN+++ G  +   +++A+ + + M   G   D  TY ++++  C+   L+E
Sbjct: 215 IKFSKSI--YNSLINGFCQAGWIDKAQSIISFMRRNGCEPDLVTYNVLLNYCCDELLLEE 272

Query: 405 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
           A+     +       D Y Y  ++KGLC++ ++ +A   +   +++    ++V YN +I 
Sbjct: 273 AENLMKKMERSGVEPDVYSYNELLKGLCKANRLDKAYMMMVNKMEAKGLCDVVSYNTIIK 332

Query: 465 GACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
             C  S  + AY++  EM   G+ PD VT+ IL K     G+
Sbjct: 333 ALCTASHTKRAYKLFEEMGGKGITPDVVTFTILIKAFLREGS 374



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 65/114 (57%), Gaps = 5/114 (4%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   ++G AH +F DM   G  P+VVSY  LI+G CR   +  A  ++++M   G 
Sbjct: 401 VDHLCKTGKMGMAHSVFCDMVESGITPDVVSYNALINGLCRASRVSEAMHLYEDMHTGGP 460

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSL 114
            P+ +T+ +++ G++  + +  A     ++W++M  E+  +++ A    LV+++
Sbjct: 461 CPDEVTFKLIIGGLIWEKKLSVA----CRVWDQMM-EKGFTLDGAVSETLVNAI 509


>gi|357499033|ref|XP_003619805.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494820|gb|AES76023.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 548

 Score =  177 bits (450), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 121/470 (25%), Positives = 233/470 (49%), Gaps = 11/470 (2%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M+  G   +  ++  LI+ + + G   +++ +F ++   G  P ++T++ L++G+     
Sbjct: 87  MELNGIESDFFTFNILINCFSQLGLNSLSFSIFAKILKKGYHPTAITFNTLIKGLCLKGH 146

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
           + +A     K+       +   ++  ++  L++ LC+ G +    ++ + +  GK V   
Sbjct: 147 IHQALHFHDKVVA-----QGFHLDQVSYGTLINGLCKVGRITAALQLLKRV-DGKLVQPN 200

Query: 140 FACGHMI-DSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLE 198
               +MI D++C++   + A  +   M  + + P + +YN+++ G         A  L  
Sbjct: 201 AVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRICPDVFTYNALISGFSAVSKLNYAIDLFN 260

Query: 199 EGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC-NIYLRALCLI 257
           +  +    P+ +T+ +LV+G C E  +  A+ VL  M+ K D+    +  N  +   C I
Sbjct: 261 KMKKENINPNVYTFNILVDGFCKEGKVNDAKVVLAIMM-KDDIKPDVVTYNSLMDGYCSI 319

Query: 258 KNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVT 317
               +  ++   M       +V    T++NGFCK+  ++EA+ +  +M   K   P+ VT
Sbjct: 320 NKVNKAKDIFDSMASGGVIANVQIYTTMVNGFCKIKMVDEAINLFEEMRCRKII-PNVVT 378

Query: 318 FTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCM 377
           ++++I GL  +GRI  AL L+ + M  RG  P IVTY+++L  L +   V++A  +   +
Sbjct: 379 YSSLIDGLCKLGRIFYALKLVDE-MHDRGQPPNIVTYSSILDALCKNHHVDKAIALLTNL 437

Query: 378 LGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKI 437
              G+  D  TY I+I GLC+S +L++A+  ++D++      D Y Y  MI+G C  G  
Sbjct: 438 KDQGIRPDMYTYTILIKGLCQSGRLEDAQNVFEDLLVKGYNLDVYAYTVMIQGFCDKGFF 497

Query: 438 HEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
            +A+  L ++ D+G  PN   Y +VI    +      A ++LREM   GL
Sbjct: 498 DKALALLSKMEDNGCIPNAKTYELVILSLFEKDENDTAEKLLREMIVRGL 547



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 111/476 (23%), Positives = 227/476 (47%), Gaps = 9/476 (1%)

Query: 23  RGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVER 82
           +   P    +  ++    +      A  +  +M   G+  +  T+++L+    +      
Sbjct: 55  KNPTPPTFQFNKILSSLVKAKHHSTALSLHQQMELNGIESDFFTFNILINCFSQLG---- 110

Query: 83  ANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDM-PQGKSVNEEFA 141
            N L F ++ ++ ++         F  L+  LC +G++++     + +  QG  + ++ +
Sbjct: 111 LNSLSFSIFAKILKK-GYHPTAITFNTLIKGLCLKGHIHQALHFHDKVVAQGFHL-DQVS 168

Query: 142 CGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGI 201
            G +I+ LC+ GR   A +++  +  + + P+ V YN I+  +CK      A+ L  + +
Sbjct: 169 YGTLINGLCKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMV 228

Query: 202 QFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPT 261
                P   TY  L+ G    S L  A  +   M  +         NI +   C      
Sbjct: 229 AKRICPDVFTYNALISGFSAVSKLNYAIDLFNKMKKENINPNVYTFNILVDGFCKEGKVN 288

Query: 262 ELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTI 321
           +   VL  M++   +PDV+T N++++G+C + ++ +A  + + M +G   A +   +TT+
Sbjct: 289 DAKVVLAIMMKDDIKPDVVTYNSLMDGYCSINKVNKAKDIFDSMASGGVIA-NVQIYTTM 347

Query: 322 IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG 381
           + G   +  + EA+NL ++ M  R   P +VTY++++ GL +L R+  A ++ + M   G
Sbjct: 348 VNGFCKIKMVDEAINL-FEEMRCRKIIPNVVTYSSLIDGLCKLGRIFYALKLVDEMHDRG 406

Query: 382 VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAV 441
              +  TY+ ++D LC+++ +D+A     ++       D Y Y  +IKGLC+SG++ +A 
Sbjct: 407 QPPNIVTYSSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTILIKGLCQSGRLEDAQ 466

Query: 442 HFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           +   +L+  G   ++  Y V+I G C      +A  +L +M  NG  P+A T+ ++
Sbjct: 467 NVFEDLLVKGYNLDVYAYTVMIQGFCDKGFFDKALALLSKMEDNGCIPNAKTYELV 522



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 97/393 (24%), Positives = 199/393 (50%), Gaps = 2/393 (0%)

Query: 107 FANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMR 166
           F  ++ SL +  + +    + + M      ++ F    +I+   + G N  +  +   + 
Sbjct: 64  FNKILSSLVKAKHHSTALSLHQQMELNGIESDFFTFNILINCFSQLGLNSLSFSIFAKIL 123

Query: 167 KRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLE 226
           K+G  P+ +++N+++ GLC  G   +A    ++ +  G+   + +Y  L+ GLC    + 
Sbjct: 124 KKGYHPTAITFNTLIKGLCLKGHIHQALHFHDKVVAQGFHLDQVSYGTLINGLCKVGRIT 183

Query: 227 KARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVI 286
            A ++L+ +  K       + N+ +  +C  K   +  ++   M+  +  PDV T N +I
Sbjct: 184 AALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRICPDVFTYNALI 243

Query: 287 NGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
           +GF  + ++  A+ + N M   +   P+  TF  ++ G    G++ +A  ++  +M +  
Sbjct: 244 SGFSAVSKLNYAIDLFNKM-KKENINPNVYTFNILVDGFCKEGKVNDA-KVVLAIMMKDD 301

Query: 347 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
             P +VTYN+++ G   + +V +AK++F+ M   GV+A+   Y  +++G C+   +DEA 
Sbjct: 302 IKPDVVTYNSLMDGYCSINKVNKAKDIFDSMASGGVIANVQIYTTMVNGFCKIKMVDEAI 361

Query: 407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466
             ++++     I +   Y+++I GLC+ G+I  A+  + E+ D G  PNIV Y+ ++D  
Sbjct: 362 NLFEEMRCRKIIPNVVTYSSLIDGLCKLGRIFYALKLVDEMHDRGQPPNIVTYSSILDAL 421

Query: 467 CKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
           CK     +A  +L  ++  G+ PD  T+ IL K
Sbjct: 422 CKNHHVDKAIALLTNLKDQGIRPDMYTYTILIK 454



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 89/413 (21%), Positives = 188/413 (45%), Gaps = 42/413 (10%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC + R+  A +L   +  +   PN V Y  +I   C+   ++ A+ ++ +M    +
Sbjct: 173 INGLCKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRI 232

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+  TY+ L+ G      +  A      L+ +MK +E+++ N   F  LVD  C+EG V
Sbjct: 233 CPDVFTYNALISGFSAVSKLNYA----IDLFNKMK-KENINPNVYTFNILVDGFCKEGKV 287

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           N+                                   A  V+ +M K  + P +V+YNS+
Sbjct: 288 ND-----------------------------------AKVVLAIMMKDDIKPDVVTYNSL 312

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G C      +A  + +     G + +   Y  +V G C    +++A  + + M  +K 
Sbjct: 313 MDGYCSINKVNKAKDIFDSMASGGVIANVQIYTTMVNGFCKIKMVDEAINLFEEMRCRKI 372

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           +      +  +  LC +      L ++  M      P+++T +++++  CK   +++A+ 
Sbjct: 373 IPNVVTYSSLIDGLCKLGRIFYALKLVDEMHDRGQPPNIVTYSSILDALCKNHHVDKAIA 432

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +L ++   +   PD  T+T +I GL   GR+++A N +++ +  +GY+  +  Y  +++G
Sbjct: 433 LLTNL-KDQGIRPDMYTYTILIKGLCQSGRLEDAQN-VFEDLLVKGYNLDVYAYTVMIQG 490

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413
                  ++A  + + M   G + ++ TY +VI  L E ++ D A++   +++
Sbjct: 491 FCDKGFFDKALALLSKMEDNGCIPNAKTYELVILSLFEKDENDTAEKLLREMI 543



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 68/265 (25%), Positives = 129/265 (48%), Gaps = 2/265 (0%)

Query: 233 QFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKM 292
             +L K     T   N  L +L   K+ +  L++   M     + D  T N +IN F ++
Sbjct: 50  HLLLHKNPTPPTFQFNKILSSLVKAKHHSTALSLHQQMELNGIESDFFTFNILINCFSQL 109

Query: 293 GRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIV 352
           G    +  +   ++   +  P A+TF T+I GL   G I +AL+   +V+ Q G+    V
Sbjct: 110 GLNSLSFSIFAKILKKGY-HPTAITFNTLIKGLCLKGHIHQALHFHDKVVAQ-GFHLDQV 167

Query: 353 TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI 412
           +Y  ++ GL ++ R+  A ++   + G  V  ++  Y ++ID +C++  +++A   +  +
Sbjct: 168 SYGTLINGLCKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQM 227

Query: 413 VWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMK 472
           V      D + Y A+I G     K++ A+    ++    + PN+  +N+++DG CK    
Sbjct: 228 VAKRICPDVFTYNALISGFSAVSKLNYAIDLFNKMKKENINPNVYTFNILVDGFCKEGKV 287

Query: 473 REAYQILREMRKNGLNPDAVTWRIL 497
            +A  +L  M K+ + PD VT+  L
Sbjct: 288 NDAKVVLAIMMKDDIKPDVVTYNSL 312


>gi|414888175|tpg|DAA64189.1| TPA: hypothetical protein ZEAMMB73_647521 [Zea mays]
          Length = 667

 Score =  177 bits (450), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 120/478 (25%), Positives = 226/478 (47%), Gaps = 6/478 (1%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           ++S+G   +   Y  L+ GY R G+ D     FDEM   G     + Y+  + GVL    
Sbjct: 152 VRSQGVALHRSLYRILLSGYVRAGKFDSVIHTFDEMVTSGCREFGVDYNRFI-GVL---- 206

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
           V+     + + +  +  ++   + +  ++  + +LC+   +  V R+  DM +     + 
Sbjct: 207 VKNCCFDLVEKYYSVALDKGFCLTSFTYSRWISALCQSERIELVERLLADMDKFGCFPDI 266

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
           +AC   +D LC+  R H A + +  M  RG  P +V+Y ++V  LC +     A +L EE
Sbjct: 267 WACNIYVDCLCKHNRLHDALKTLENMWIRGTNPDVVTYTTVVGCLCDNKQFAEAVELWEE 326

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
            ++ G  P      VL+ GLC    +++A ++   MLS        I N  +       +
Sbjct: 327 MVRRGLKPDIVACGVLIFGLCKSDKVDEAFELALRMLSLNLELNVCIYNALISGFLRSGS 386

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
             +   ++  M    C+PDV+T N  +N +C  G I+EA K++ +M       PD  ++ 
Sbjct: 387 INKAFKIISVMRTNGCEPDVVTYNIRLNHYCNTGMIKEAEKLIEEMEMSGIVNPDRYSYN 446

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
            ++ GL    ++  A   +   M   G+   IV+ N ++    + ++V  A ++F  M  
Sbjct: 447 QMLKGLCKAHQLDRAFGFVSDHMEVGGFC-DIVSCNILIDAFCKAKKVSSALKLFKEMGY 505

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
            G+ AD+ TY  +I+GL        A+  ++ ++    + +  +Y  M+  LC++G+  +
Sbjct: 506 KGIQADAVTYGTLINGLYGVGYYYLAEEIFEQMLKARVVPNVNLYNIMLHNLCKAGQFEQ 565

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           A     +++   V+P+I+ +N +I    K S   EA  + R+M   G+ PD++T+R L
Sbjct: 566 AQKIFLQMIQKEVSPDIITFNTLIYWLGKCSRAIEAIDLFRDMTARGIEPDSLTFRYL 623



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 106/411 (25%), Positives = 185/411 (45%), Gaps = 43/411 (10%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC  +R+ +A K   +M  RG  P+VV+YTT++   C   +   A ++++EM   G+
Sbjct: 273 VDCLCKHNRLHDALKTLENMWIRGTNPDVVTYTTVVGCLCDNKQFAEAVELWEEMVRRGL 332

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +   VL+ G+ ++  V+ A    F+L  RM    +L +N   +  L+    R G +
Sbjct: 333 KPDIVACGVLIFGLCKSDKVDEA----FELALRML-SLNLELNVCIYNALISGFLRSGSI 387

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           N+ F+I                                   + VMR  G  P +V+YN  
Sbjct: 388 NKAFKI-----------------------------------ISVMRTNGCEPDVVTYNIR 412

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYL-PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++  C  G    A +L+EE    G + P  ++Y  +++GLC    L++A   +   +   
Sbjct: 413 LNHYCNTGMIKEAEKLIEEMEMSGIVNPDRYSYNQMLKGLCKAHQLDRAFGFVSDHMEVG 472

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                  CNI + A C  K  +  L +   M     Q D +T  T+ING   +G    A 
Sbjct: 473 GFCDIVSCNILIDAFCKAKKVSSALKLFKEMGYKGIQADAVTYGTLINGLYGVGYYYLAE 532

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           ++   M+  +   P+   +  ++  L   G+ ++A  +  Q M Q+  SP I+T+N ++ 
Sbjct: 533 EIFEQMLKAR-VVPNVNLYNIMLHNLCKAGQFEQAQKIFLQ-MIQKEVSPDIITFNTLIY 590

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD 410
            L +  R  EA ++F  M   G+  DS T+  +I GL E  +  +A   W+
Sbjct: 591 WLGKCSRAIEAIDLFRDMTARGIEPDSLTFRYLISGLLEEGKATQAYEVWE 641



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 76/318 (23%), Positives = 130/318 (40%), Gaps = 36/318 (11%)

Query: 223 SDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITL 282
           SD E A +   +  S+   D T+    Y+ +L  + +   LL+  +  +++Q      +L
Sbjct: 104 SDSEMAVRFYWWAESRPGFDHTQFAIAYVVSLLFVDSNFFLLSEFLERVRSQGVALHRSL 163

Query: 283 -NTVINGFCKMGRIEEALKVLNDMVAG-----------------KFCAPDAV-------- 316
              +++G+ + G+ +  +   ++MV                   K C  D V        
Sbjct: 164 YRILLSGYVRAGKFDSVIHTFDEMVTSGCREFGVDYNRFIGVLVKNCCFDLVEKYYSVAL 223

Query: 317 ---------TFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRV 367
                    T++  I  L    RI+    LL   M + G  P I   N  +  L +  R+
Sbjct: 224 DKGFCLTSFTYSRWISALCQSERIELVERLLAD-MDKFGCFPDIWACNIYVDCLCKHNRL 282

Query: 368 EEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAM 427
            +A +    M   G   D  TY  V+  LC++ Q  EA   W+++V      D      +
Sbjct: 283 HDALKTLENMWIRGTNPDVVTYTTVVGCLCDNKQFAEAVELWEEMVRRGLKPDIVACGVL 342

Query: 428 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
           I GLC+S K+ EA      ++   +  N+  YN +I G  +     +A++I+  MR NG 
Sbjct: 343 IFGLCKSDKVDEAFELALRMLSLNLELNVCIYNALISGFLRSGSINKAFKIISVMRTNGC 402

Query: 488 NPDAVTWRILDKLHGNRG 505
            PD VT+ I    + N G
Sbjct: 403 EPDVVTYNIRLNHYCNTG 420



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/204 (20%), Positives = 85/204 (41%), Gaps = 40/204 (19%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C   +V  A KLF +M  +G   + V+Y TLI+G    G   +A ++F++M    V
Sbjct: 484 IDAFCKAKKVSSALKLFKEMGYKGIQADAVTYGTLINGLYGVGYYYLAEEIFEQMLKARV 543

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +PN   Y++++  + +    E+A  +  ++ ++     ++S +   F  L+  L +    
Sbjct: 544 VPNVNLYNIMLHNLCKAGQFEQAQKIFLQMIQK-----EVSPDIITFNTLIYWLGKCSRA 598

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E   +  DM                                     RG+ P  +++  +
Sbjct: 599 IEAIDLFRDMT-----------------------------------ARGIEPDSLTFRYL 623

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFG 204
           + GL + G   +AY++ E  ++ G
Sbjct: 624 ISGLLEEGKATQAYEVWEYMLENG 647


>gi|357485461|ref|XP_003613018.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355514353|gb|AES95976.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 894

 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 142/546 (26%), Positives = 243/546 (44%), Gaps = 68/546 (12%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C +  +G+A+K+F  M   G + N VSYT LIHG+C  G++D A ++F +M+  G  P+ 
Sbjct: 236 CKIHELGDAYKVFEIMPQEGCLRNEVSYTNLIHGFCEVGKIDEALELFFQMKEDGCFPDV 295

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKE---------------------------- 96
            TY+VLV           A     K +E M E                            
Sbjct: 296 PTYTVLVAAFCEVGKETEA----LKFFEEMVENGIEPNVYTYTVLIDYFCKVGKMDEGME 351

Query: 97  ------EEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC 150
                 E+ L  +   F  L+D  C+ G + +   + + M   K          +I   C
Sbjct: 352 MLSTMLEKGLVSSVVPFNALIDGYCKRGMMEDAICVLDSMKLNKVCPNSRTYNELICGFC 411

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
           R      A  ++  M +  L+P+LV+YN+++HGLCK      A++L    I+ G++P + 
Sbjct: 412 RKKSMDRAMALLNKMYENKLSPNLVTYNTLIHGLCKARVVDSAWRLHHLMIKDGFVPDQR 471

Query: 211 TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM 270
           T+   ++ LC    +E+A +V + +  K       +    +   C  +  ++   +   M
Sbjct: 472 TFCAFIDCLCKMGKVEQAHQVFESLKEKHAEANEFLYTALIDGYCKAEKFSDAHLLFKRM 531

Query: 271 LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCA-PDAVTFTTIIFGLLNVG 329
           L   C P+ IT N +++G  K G++E+A+ +++  V GKF A P   T+T +I  +L   
Sbjct: 532 LFEGCFPNSITFNVLLDGLRKEGKVEDAMSLVD--VMGKFDAKPTVHTYTILIEEILRES 589

Query: 330 RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTY 389
               A N+    M   G  P +VTY A ++   R  R+ EA+E+   +   G++ DS  Y
Sbjct: 590 DFDRA-NMFLDQMISSGCQPNVVTYTAFIKAYCRQGRLLEAEEMVVKIKEEGILLDSFIY 648

Query: 390 AIVIDGLCESNQLDEA----KRFWDDIVWPSN----------IHDNYVYAAMIKGLCRSG 435
            ++++      QLD A     R +D    PS           I + Y    M   L  + 
Sbjct: 649 DVLVNAYGCIGQLDSAFGVLIRMFDTGCEPSRQTYSILLKHLIFEKYNKEGMGLDLNSTN 708

Query: 436 ---------KI--HEAVHFLYE-LVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
                    KI   E +  L+E +V+ G  PN+  Y+ +I G CK+     A+++   M+
Sbjct: 709 ISVDNANIWKIADFEIITMLFEKMVEQGCVPNVNTYSKLIKGLCKVEHLSLAFRLFNHMK 768

Query: 484 KNGLNP 489
           ++G++P
Sbjct: 769 ESGISP 774



 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 125/495 (25%), Positives = 221/495 (44%), Gaps = 7/495 (1%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C +  V  A   F  +   G   +  +YT+LI GYC+  E+  AYKVF+ M   G L N 
Sbjct: 201 CKIGNVVVAKAYFCGLMKFGFCCDSFTYTSLILGYCKIHELGDAYKVFEIMPQEGCLRNE 260

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           ++Y+ L+ G      ++ A  L F++     +E+    +   +  LV + C  G   E  
Sbjct: 261 VSYTNLIHGFCEVGKIDEALELFFQM-----KEDGCFPDVPTYTVLVAAFCEVGKETEAL 315

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
           +  E+M +       +    +ID  C+ G+      ++  M ++GL  S+V +N+++ G 
Sbjct: 316 KFFEEMVENGIEPNVYTYTVLIDYFCKVGKMDEGMEMLSTMLEKGLVSSVVPFNALIDGY 375

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
           CK G    A  +L+        P+  TY  L+ G C +  +++A  +L  M   K     
Sbjct: 376 CKRGMMEDAICVLDSMKLNKVCPNSRTYNELICGFCRKKSMDRAMALLNKMYENKLSPNL 435

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
              N  +  LC  +       +   M++    PD  T    I+  CKMG++E+A +V   
Sbjct: 436 VTYNTLIHGLCKARVVDSAWRLHHLMIKDGFVPDQRTFCAFIDCLCKMGKVEQAHQVFES 495

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
           +   K    +   +T +I G     +  +A +LL++ M   G  P  +T+N +L GL + 
Sbjct: 496 L-KEKHAEANEFLYTALIDGYCKAEKFSDA-HLLFKRMLFEGCFPNSITFNVLLDGLRKE 553

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY 424
            +VE+A  + + M          TY I+I+ +   +  D A  F D ++      +   Y
Sbjct: 554 GKVEDAMSLVDVMGKFDAKPTVHTYTILIEEILRESDFDRANMFLDQMISSGCQPNVVTY 613

Query: 425 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484
            A IK  CR G++ EA   + ++ + G+  +   Y+V+++    +     A+ +L  M  
Sbjct: 614 TAFIKAYCRQGRLLEAEEMVVKIKEEGILLDSFIYDVLVNAYGCIGQLDSAFGVLIRMFD 673

Query: 485 NGLNPDAVTWRILDK 499
            G  P   T+ IL K
Sbjct: 674 TGCEPSRQTYSILLK 688



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 124/512 (24%), Positives = 245/512 (47%), Gaps = 13/512 (2%)

Query: 7   LSRVG---EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LSR G   E + LF DM + G  PN++S+ T+++ +C+ G + VA   F  +   G   +
Sbjct: 165 LSRFGLIDELNCLFKDMLNDGVEPNLISFNTMVNAHCKIGNVVVAKAYFCGLMKFGFCCD 224

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           S TY+ L+ G  +  ++  A    +K++E M +E  L  N  ++ NL+   C  G ++E 
Sbjct: 225 SFTYTSLILGYCKIHELGDA----YKVFEIMPQEGCLR-NEVSYTNLIHGFCEVGKIDEA 279

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             +   M +     +      ++ + C  G+   A +    M + G+ P++ +Y  ++  
Sbjct: 280 LELFFQMKEDGCFPDVPTYTVLVAAFCEVGKETEALKFFEEMVENGIEPNVYTYTVLIDY 339

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK G      ++L   ++ G + S   +  L++G C    +E A  VL  M   K    
Sbjct: 340 FCKVGKMDEGMEMLSTMLEKGLVSSVVPFNALIDGYCKRGMMEDAICVLDSMKLNKVCPN 399

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
           +R  N  +   C  K+    + +L  M + +  P+++T NT+I+G CK   ++ A ++ +
Sbjct: 400 SRTYNELICGFCRKKSMDRAMALLNKMYENKLSPNLVTYNTLIHGLCKARVVDSAWRLHH 459

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            M+   F  PD  TF   I  L  +G++++A + +++ + ++        Y A++ G  +
Sbjct: 460 LMIKDGF-VPDQRTFCAFIDCLCKMGKVEQA-HQVFESLKEKHAEANEFLYTALIDGYCK 517

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
             +  +A  +F  ML  G   +S T+ +++DGL +  ++++A    D +         + 
Sbjct: 518 AEKFSDAHLLFKRMLFEGCFPNSITFNVLLDGLRKEGKVEDAMSLVDVMGKFDAKPTVHT 577

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y  +I+ + R      A  FL +++ SG  PN+V Y   I   C+     EA +++ +++
Sbjct: 578 YTILIEEILRESDFDRANMFLDQMISSGCQPNVVTYTAFIKAYCRQGRLLEAEEMVVKIK 637

Query: 484 KNGLNPDAVTWRILDKLHGNRG---NDFGLRI 512
           + G+  D+  + +L   +G  G   + FG+ I
Sbjct: 638 EEGILLDSFIYDVLVNAYGCIGQLDSAFGVLI 669



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 131/529 (24%), Positives = 244/529 (46%), Gaps = 45/529 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C + ++ E  ++   M  +G V +VV +  LI GYC+ G M+ A  V D M+   V
Sbjct: 337 IDYFCKVGKMDEGMEMLSTMLEKGLVSSVVPFNALIDGYCKRGMMEDAICVLDSMKLNKV 396

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PNS TY+ L+ G  R + ++RA  L+ K++E       LS N   +  L+  LC+   V
Sbjct: 397 CPNSRTYNELICGFCRKKSMDRAMALLNKMYEN-----KLSPNLVTYNTLIHGLCKARVV 451

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +  +R+   M +   V ++      ID LC+ G+   A +V   ++++    +   Y ++
Sbjct: 452 DSAWRLHHLMIKDGFVPDQRTFCAFIDCLCKMGKVEQAHQVFESLKEKHAEANEFLYTAL 511

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G CK      A+ L +  +  G  P+  T+ VL++GL  E  +E A  ++  M  K D
Sbjct: 512 IDGYCKAEKFSDAHLLFKRMLFEGCFPNSITFNVLLDGLRKEGKVEDAMSLVDVM-GKFD 570

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLV-FMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
              T      L    L ++  +  N+ +  M+ + CQP+V+T    I  +C+ GR+ EA 
Sbjct: 571 AKPTVHTYTILIEEILRESDFDRANMFLDQMISSGCQPNVVTYTAFIKAYCRQGRLLEAE 630

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           +++   +  +    D+  +  ++     +G++  A  +L + M   G  P   TY+ +L+
Sbjct: 631 EMVVK-IKEEGILLDSFIYDVLVNAYGCIGQLDSAFGVLIR-MFDTGCEPSRQTYSILLK 688

Query: 360 GL--------------------------FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVI 393
            L                          +++   E    +F  M+  G V +  TY+ +I
Sbjct: 689 HLIFEKYNKEGMGLDLNSTNISVDNANIWKIADFEIITMLFEKMVEQGCVPNVNTYSKLI 748

Query: 394 DGLCESNQLDEAKRFWDDI----VWPS-NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELV 448
            GLC+   L  A R ++ +    + PS NIH+     +++   C+ G   EA+  L  ++
Sbjct: 749 KGLCKVEHLSLAFRLFNHMKESGISPSENIHN-----SLLSSCCKLGMHEEALRLLDSMM 803

Query: 449 DSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           +     ++  Y +++ G  +   + +A +I R +   G N D V W++L
Sbjct: 804 EYNHLAHLESYKLLVCGLFEQGNQEKAEEIFRSLLSCGYNYDEVVWKVL 852



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 104/201 (51%), Gaps = 2/201 (0%)

Query: 297 EALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
           EA  VLN +   +F    +VT    +F +L+   + + LN L++ M   G  P ++++N 
Sbjct: 138 EARFVLNLLTHHEFSL--SVTSYNRLFMVLSRFGLIDELNCLFKDMLNDGVEPNLISFNT 195

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416
           ++    ++  V  AK  F  ++  G   DS TY  +I G C+ ++L +A + ++ +    
Sbjct: 196 MVNAHCKIGNVVVAKAYFCGLMKFGFCCDSFTYTSLILGYCKIHELGDAYKVFEIMPQEG 255

Query: 417 NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAY 476
            + +   Y  +I G C  GKI EA+   +++ + G  P++  Y V++   C++  + EA 
Sbjct: 256 CLRNEVSYTNLIHGFCEVGKIDEALELFFQMKEDGCFPDVPTYTVLVAAFCEVGKETEAL 315

Query: 477 QILREMRKNGLNPDAVTWRIL 497
           +   EM +NG+ P+  T+ +L
Sbjct: 316 KFFEEMVENGIEPNVYTYTVL 336


>gi|326522214|dbj|BAK04235.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 966

 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 129/515 (25%), Positives = 235/515 (45%), Gaps = 35/515 (6%)

Query: 8   SRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTY 67
           S   EA      M+   ++PNVV+Y TL+ G+ +  ++    ++ + M   G  P+   +
Sbjct: 285 SLFNEAMSFLHRMRCNSYIPNVVTYRTLLTGFLKKKQLGWCKRIINMMMTEGCNPSPSLF 344

Query: 68  SVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLC-REGYVNEVF-- 124
           + LV       D   A    +KL+ RM            +   + S+C RE   N     
Sbjct: 345 NSLVHTYCNAEDYAYA----YKLFNRMNTC-GCPPGYVVYNIFIGSICGREELPNPELLD 399

Query: 125 ---RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
              ++ E+M     V  +    +    LC  G+   A ++V  M ++G  P   +Y  ++
Sbjct: 400 LAEKVYEEMLVASCVLNKINTANFARCLCGVGKFEKAFQIVKEMMRKGFVPDASTYTKVI 459

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM----LS 237
             LC+     +A+ L +E  + G  P  +TY +L++  C    +E+A+     M     S
Sbjct: 460 TFLCQAKRVDKAFLLFQEMKKVGVNPDVYTYTILIDSFCKAGLIEQAQSWFDEMRSAGCS 519

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
              V  T + + YL++    K   +  ++   M+   C P+ IT + +I+G CK G I++
Sbjct: 520 PNVVTYTALLHAYLKS----KQLYQANDIFHRMVGDACYPNAITYSALIDGLCKAGEIQK 575

Query: 298 ALKV------LNDMVAGKF---------CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVM 342
           A +V       +D +   F          +P+ VT+  ++ GL    ++ +A +LL   M
Sbjct: 576 ACEVYAKLIGTSDNIESDFYFEGKDTDTISPNVVTYGALVNGLCKAQKVSDAHDLL-DAM 634

Query: 343 PQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQL 402
              G  P  + Y+A++ G  ++  ++ A+EVF  M   G +    TY  +ID + +  +L
Sbjct: 635 LAAGCEPNQIVYDALVDGFCKVGEIDSAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRL 694

Query: 403 DEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVV 462
           D A +    ++  S   +   Y AM+ GLC++G+  +A++ L  +   G +PN+V Y  +
Sbjct: 695 DLAMKVLSQMLKDSCNPNVVTYTAMVDGLCKTGETEKALNLLSLMEKKGCSPNVVTYTAL 754

Query: 463 IDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           IDG  K        ++  +M+  G  P+ VT+RIL
Sbjct: 755 IDGLGKAGKVDAGLELFMQMKTKGCAPNYVTYRIL 789



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 129/504 (25%), Positives = 238/504 (47%), Gaps = 28/504 (5%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   RV +A  LF +MK  G  P+V +YT LI  +C+ G ++ A   FDEMR  G  PN
Sbjct: 462 LCQAKRVDKAFLLFQEMKKVGVNPDVYTYTILIDSFCKAGLIEQAQSWFDEMRSAGCSPN 521

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY+ L+   L+++ + +AN     ++ RM  +     N   ++ L+D LC+ G + + 
Sbjct: 522 VVTYTALLHAYLKSKQLYQAN----DIFHRMVGDA-CYPNAITYSALIDGLCKAGEIQKA 576

Query: 124 FRI-AEDMPQGKSVNEEF---------------ACGHMIDSLCRSGRNHGASRVVYVMRK 167
             + A+ +    ++  +F                 G +++ LC++ +   A  ++  M  
Sbjct: 577 CEVYAKLIGTSDNIESDFYFEGKDTDTISPNVVTYGALVNGLCKAQKVSDAHDLLDAMLA 636

Query: 168 RGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEK 227
            G  P+ + Y+++V G CK G    A ++     + GYLPS HTY  L++ +  +  L+ 
Sbjct: 637 AGCEPNQIVYDALVDGFCKVGEIDSAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDL 696

Query: 228 ARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVIN 287
           A KVL  ML              +  LC      + LN+L  M +  C P+V+T   +I+
Sbjct: 697 AMKVLSQMLKDSCNPNVVTYTAMVDGLCKTGETEKALNLLSLMEKKGCSPNVVTYTALID 756

Query: 288 GFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGY 347
           G  K G+++  L++   M   K CAP+ VT+  +I      G + +A  LL + M Q  +
Sbjct: 757 GLGKAGKVDAGLELFMQMKT-KGCAPNYVTYRILINHCCAAGLLDDAHLLLDE-MKQTHW 814

Query: 348 SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKR 407
              +  Y   ++G    +R   +  +   M        +  Y ++ID   ++ +L+ A  
Sbjct: 815 PKYLQGYRTTVQGFS--KRFLASLGLLEEMESHDTAPIAPVYGMLIDSFSKAGRLETALE 872

Query: 408 FWDDIVWPS---NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
              +++  S   N+    ++ ++I+ LC S ++ EAV    E+   G+ P++  +  ++ 
Sbjct: 873 LHKEMMEVSSSLNMASKDMHTSLIQALCLSSQVEEAVALYSEMRRRGIVPDLSAFVCLVK 932

Query: 465 GACKLSMKREAYQILREMRKNGLN 488
           G  + +   EA Q+   + + G+N
Sbjct: 933 GLIERNKWNEALQLCYGICQEGVN 956



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 120/526 (22%), Positives = 228/526 (43%), Gaps = 35/526 (6%)

Query: 11  GEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVL 70
           GEA +    +K  G+ P+ V+Y  L+      G++++A++V  EM   G   +  T    
Sbjct: 186 GEALEELGRLKDFGYRPSAVTYNALVQVLASAGQVEMAFRVQKEMSASGFCMDRSTVGSF 245

Query: 71  VRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDM 130
            + + +      A  L+        E ED  ++      ++  L      NE       M
Sbjct: 246 AQALCKEGRWGDALDLL--------EREDFKLDTVLCTQMISGLMEASLFNEAMSFLHRM 297

Query: 131 PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGC 190
                +        ++    +  +     R++ +M   G  PS   +NS+VH  C     
Sbjct: 298 RCNSYIPNVVTYRTLLTGFLKKKQLGWCKRIINMMMTEGCNPSPSLFNSLVHTYCNAEDY 357

Query: 191 MRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEK------ARKVLQFMLSKKDV-DR 243
             AY+L       G  P    Y + +  +CG  +L        A KV + ML    V ++
Sbjct: 358 AYAYKLFNRMNTCGCPPGYVVYNIFIGSICGREELPNPELLDLAEKVYEEMLVASCVLNK 417

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               N + R LC +    +   ++  M++    PD  T   VI   C+  R+++A  +  
Sbjct: 418 INTAN-FARCLCGVGKFEKAFQIVKEMMRKGFVPDASTYTKVITFLCQAKRVDKAFLLFQ 476

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           +M       PD  T+T +I      G I++A +  +  M   G SP +VTY A+L    +
Sbjct: 477 EMKKVGV-NPDVYTYTILIDSFCKAGLIEQAQS-WFDEMRSAGCSPNVVTYTALLHAYLK 534

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS-NIHDNY 422
            +++ +A ++F+ M+G     ++ TY+ +IDGLC++ ++ +A   +  ++  S NI  ++
Sbjct: 535 SKQLYQANDIFHRMVGDACYPNAITYSALIDGLCKAGEIQKACEVYAKLIGTSDNIESDF 594

Query: 423 ---------------VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGAC 467
                           Y A++ GLC++ K+ +A   L  ++ +G  PN + Y+ ++DG C
Sbjct: 595 YFEGKDTDTISPNVVTYGALVNGLCKAQKVSDAHDLLDAMLAAGCEPNQIVYDALVDGFC 654

Query: 468 KLSMKREAYQILREMRKNGLNPDAVTW-RILDKLHGNRGNDFGLRI 512
           K+     A ++   M K G  P   T+  ++D++  +   D  +++
Sbjct: 655 KVGEIDSAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKV 700



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 82/327 (25%), Positives = 147/327 (44%), Gaps = 13/327 (3%)

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM-L 236
           N +V   C  G    A + L     FGY PS  TY  LV+ L     +E A +V + M  
Sbjct: 173 NVLVRRCCLQGLWGEALEELGRLKDFGYRPSAVTYNALVQVLASAGQVEMAFRVQKEMSA 232

Query: 237 SKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIE 296
           S   +DR+ +   + +ALC      + L++L    +   + D +    +I+G  +     
Sbjct: 233 SGFCMDRSTV-GSFAQALCKEGRWGDALDLLE---REDFKLDTVLCTQMISGLMEASLFN 288

Query: 297 EALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
           EA+  L+ M    +  P+ VT+ T++ G L   ++     ++  +M + G +P    +N+
Sbjct: 289 EAMSFLHRMRCNSY-IPNVVTYRTLLTGFLKKKQLGWCKRIINMMMTE-GCNPSPSLFNS 346

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ------LDEAKRFWD 410
           ++           A ++FN M   G       Y I I  +C   +      LD A++ ++
Sbjct: 347 LVHTYCNAEDYAYAYKLFNRMNTCGCPPGYVVYNIFIGSICGREELPNPELLDLAEKVYE 406

Query: 411 DIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLS 470
           +++  S + +    A   + LC  GK  +A   + E++  G  P+   Y  VI   C+  
Sbjct: 407 EMLVASCVLNKINTANFARCLCGVGKFEKAFQIVKEMMRKGFVPDASTYTKVITFLCQAK 466

Query: 471 MKREAYQILREMRKNGLNPDAVTWRIL 497
              +A+ + +EM+K G+NPD  T+ IL
Sbjct: 467 RVDKAFLLFQEMKKVGVNPDVYTYTIL 493


>gi|358347154|ref|XP_003637626.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503561|gb|AES84764.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 989

 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 120/490 (24%), Positives = 238/490 (48%), Gaps = 27/490 (5%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           R   A   F  M++ G VP +  + TL++ +  +G +     ++ +M  CGV+P+  + +
Sbjct: 74  RFSTASATFSHMRALGLVPTLPFWNTLLYQFNASGLVSQVKLMYSDMLFCGVVPDVFSVN 133

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
           VLV  + +  D++ A          ++  + + ++N  +  ++   C++G V++ F +  
Sbjct: 134 VLVHSLCKVGDLDLA-------LGYLRNNDVVDIDNVTYNTVIWGFCQKGLVDQGFGLLS 186

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
           +M +     +   C  ++   CR G    A  V+Y +   G+T  ++  N+++ G C+  
Sbjct: 187 EMVKRGLCFDSITCNILVKGYCRIGLVQYAEWVMYNLVDGGVTKDVIGLNTLIDGYCEAV 246

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS-KKDVDRTRIC 247
              +A +L+E   +        TY  L++  C   DL +A  +   +L   KD DR +  
Sbjct: 247 LMSQATELIENSWRSDVKIDIVTYNTLLKAFCKTGDLTRAESLFNEILGFWKDEDRLKNN 306

Query: 248 NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA 307
           ++  +         E+ N+         QP ++T  T+I  +CK   +EE+  +   M+ 
Sbjct: 307 DVVTQ--------NEIKNL---------QPTLVTYTTLIAAYCKFVGVEESHSLYKKMIM 349

Query: 308 GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRV 367
                PD VT ++I++G    G++ EA  +L++ M + G  P  V+Y  ++  LF+  RV
Sbjct: 350 NGI-MPDVVTCSSILYGFCRHGKLTEA-AVLFREMYEMGLDPNHVSYATIINSLFKSGRV 407

Query: 368 EEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAM 427
            EA  + + M+  G+  D  T   V+DGL +  +  EA+  ++ I+  +   +   Y+A+
Sbjct: 408 MEAFNLQSQMVVRGISFDIVTCTTVMDGLFKVGKTKEAEEVFETILKLNLAPNCVTYSAL 467

Query: 428 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
           + G C+ GK+  A   L ++    V PN++ ++ +I+G  K  M  +A  +LREM +  +
Sbjct: 468 LDGYCKLGKMELAELVLQKMEKEHVPPNVITFSSIINGYAKKGMLSKAVDVLREMVQRNV 527

Query: 488 NPDAVTWRIL 497
            P+ + + IL
Sbjct: 528 MPNTIVYAIL 537



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 129/542 (23%), Positives = 246/542 (45%), Gaps = 48/542 (8%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C    V E+H L+  M   G +P+VV+ +++++G+CR G++  A  +F EM   G+ PN 
Sbjct: 332 CKFVGVEESHSLYKKMIMNGIMPDVVTCSSILYGFCRHGKLTEAAVLFREMYEMGLDPNH 391

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           ++Y+ ++  + ++  V  A    F L  +M     +S +      ++D L + G   E  
Sbjct: 392 VSYATIINSLFKSGRVMEA----FNLQSQM-VVRGISFDIVTCTTVMDGLFKVGKTKEAE 446

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
            + E + +            ++D  C+ G+   A  V+  M K  + P++++++SI++G 
Sbjct: 447 EVFETILKLNLAPNCVTYSALLDGYCKLGKMELAELVLQKMEKEHVPPNVITFSSIINGY 506

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
            K G   +A  +L E +Q   +P+   Y +L++G     + + A    + M S++  +  
Sbjct: 507 AKKGMLSKAVDVLREMVQRNVMPNTIVYAILIDGYFKAGEQDVADDFCKEMKSRRLEESN 566

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
            I +I L  L  +    E  ++++ M      PD++   ++I+G+ K G    AL ++ +
Sbjct: 567 VIFDILLNNLKRVGRMDEARSLIIDMYSKGIDPDIVNYASLIDGYFKEGNQLAALSIVQE 626

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
           M   K    D V +  +I GLL +G+       +   M + G +P  +TYN ++      
Sbjct: 627 M-KEKNIRFDVVAYNALIKGLLRLGKYDP--RYVCSRMIELGLAPDCITYNTIINTYCIK 683

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN------------------------ 400
            + E+A ++ N M   G++ ++ TY I+I GLC++                         
Sbjct: 684 GKTEDALDILNEMKSYGIMPNAVTYNILIGGLCKTGFVPTPITHKFLVKAYSRSEKADKI 743

Query: 401 ------------QLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELV 448
                       +L   K   D++V      D   Y A+I+G C    + +A+    ++ 
Sbjct: 744 LQIHEKLVASGLELKRQKVVLDEMVKRGISADLVTYNALIRGYCTGSHVEKALKTYSQMF 803

Query: 449 DSGVTPNIVCYNVVIDGACKLSM----KREAYQILREMRKNGLNPDAVTWRILDKLHGNR 504
             G+ PNI  YN ++ G     +      E  +++ EM + GL P+A T+ IL   +G  
Sbjct: 804 VDGIAPNITTYNTLLGGLSNAGLMEEMMEETEKLVSEMNERGLVPNAATYDILVSGYGRV 863

Query: 505 GN 506
           GN
Sbjct: 864 GN 865



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 133/512 (25%), Positives = 235/512 (45%), Gaps = 27/512 (5%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C +  V  A  + +++   G   +V+   TLI GYC    M  A ++ +      V  + 
Sbjct: 208 CRIGLVQYAEWVMYNLVDGGVTKDVIGLNTLIDGYCEAVLMSQATELIENSWRSDVKIDI 267

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNN--------------AAFANL 110
           +TY+ L++   +T D+ RA  L  ++    K+E+ L  N+                +  L
Sbjct: 268 VTYNTLLKAFCKTGDLTRAESLFNEILGFWKDEDRLKNNDVVTQNEIKNLQPTLVTYTTL 327

Query: 111 VDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGL 170
           + + C+   V E   + + M     + +   C  ++   CR G+   A+ +   M + GL
Sbjct: 328 IAAYCKFVGVEESHSLYKKMIMNGIMPDVVTCSSILYGFCRHGKLTEAAVLFREMYEMGL 387

Query: 171 TPSLVSYNSIVHGLCKHGGCMRAY----QLLEEGIQFGYLPSEHTYKVLVEGLCGESDLE 226
            P+ VSY +I++ L K G  M A+    Q++  GI F  +    T   +++GL      +
Sbjct: 388 DPNHVSYATIINSLFKSGRVMEAFNLQSQMVVRGISFDIV----TCTTVMDGLFKVGKTK 443

Query: 227 KARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVI 286
           +A +V + +L           +  L   C +        VL  M +    P+VIT +++I
Sbjct: 444 EAEEVFETILKLNLAPNCVTYSALLDGYCKLGKMELAELVLQKMEKEHVPPNVITFSSII 503

Query: 287 NGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
           NG+ K G + +A+ VL +MV  +   P+ + +  +I G    G  Q+  +   + M  R 
Sbjct: 504 NGYAKKGMLSKAVDVLREMVQ-RNVMPNTIVYAILIDGYFKAGE-QDVADDFCKEMKSRR 561

Query: 347 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG-LCESNQLDEA 405
                V ++ +L  L R+ R++EA+ +   M   G+  D   YA +IDG   E NQL  A
Sbjct: 562 LEESNVIFDILLNNLKRVGRMDEARSLIIDMYSKGIDPDIVNYASLIDGYFKEGNQL-AA 620

Query: 406 KRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDG 465
                ++   +   D   Y A+IKGL R GK ++  +    +++ G+ P+ + YN +I+ 
Sbjct: 621 LSIVQEMKEKNIRFDVVAYNALIKGLLRLGK-YDPRYVCSRMIELGLAPDCITYNTIINT 679

Query: 466 ACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            C      +A  IL EM+  G+ P+AVT+ IL
Sbjct: 680 YCIKGKTEDALDILNEMKSYGIMPNAVTYNIL 711



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 128/536 (23%), Positives = 232/536 (43%), Gaps = 81/536 (15%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           MD L  + +  EA ++F  +      PN V+Y+ L+ GYC+ G+M++A  V  +M    V
Sbjct: 433 MDGLFKVGKTKEAEEVFETILKLNLAPNCVTYSALLDGYCKLGKMELAELVLQKMEKEHV 492

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +T+S ++ G  +   + +A  ++ ++ +R     ++  N   +A L+D   + G  
Sbjct: 493 PPNVITFSSIINGYAKKGMLSKAVDVLREMVQR-----NVMPNTIVYAILIDGYFKAGEQ 547

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +      ++M   +          ++++L R GR   A  ++  M  +G+ P +V+Y S+
Sbjct: 548 DVADDFCKEMKSRRLEESNVIFDILLNNLKRVGRMDEARSLIIDMYSKGIDPDIVNYASL 607

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G  K G  + A  +++E  +         Y  L++GL                L    
Sbjct: 608 IDGYFKEGNQLAALSIVQEMKEKNIRFDVVAYNALIKGL----------------LRLGK 651

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
            D   +C+                     M++    PD IT NT+IN +C  G+ E+AL 
Sbjct: 652 YDPRYVCS--------------------RMIELGLAPDCITYNTIINTYCIKGKTEDALD 691

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVG-------------------------RIQEAL 335
           +LN+M +     P+AVT+  +I GL   G                         +I E L
Sbjct: 692 ILNEMKSYGI-MPNAVTYNILIGGLCKTGFVPTPITHKFLVKAYSRSEKADKILQIHEKL 750

Query: 336 ----------NLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 385
                      ++   M +RG S  +VTYNA++RG      VE+A + ++ M   G+  +
Sbjct: 751 VASGLELKRQKVVLDEMVKRGISADLVTYNALIRGYCTGSHVEKALKTYSQMFVDGIAPN 810

Query: 386 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSN----IHDNYVYAAMIKGLCRSGKIHEAV 441
            TTY  ++ GL  +  ++E     + +V   N    + +   Y  ++ G  R G   + +
Sbjct: 811 ITTYNTLLGGLSNAGLMEEMMEETEKLVSEMNERGLVPNAATYDILVSGYGRVGNRKKTI 870

Query: 442 HFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
               E++  G  P +  YNV+I    K     EA ++L ++   G  P++ T+ IL
Sbjct: 871 ILHIEMITKGFVPTLKTYNVLISDYAKSGKMIEARELLNDLLTKGRIPNSFTYDIL 926



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 115/493 (23%), Positives = 231/493 (46%), Gaps = 34/493 (6%)

Query: 30  VSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFK 89
           V+Y T+I G+C+ G +D  + +  EM   G+  +S+T ++LV+G  R   V+ A  +M+ 
Sbjct: 163 VTYNTVIWGFCQKGLVDQGFGLLSEMVKRGLCFDSITCNILVKGYCRIGLVQYAEWVMYN 222

Query: 90  LWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSL 149
           L +    ++ + +N      L+D  C    +++   + E+  +     +      ++ + 
Sbjct: 223 LVDGGVTKDVIGLNT-----LIDGYCEAVLMSQATELIENSWRSDVKIDIVTYNTLLKAF 277

Query: 150 CRSGRNHGASR-------------------VVYVMRKRGLTPSLVSYNSIVHGLCKHGGC 190
           C++G    A                     VV     + L P+LV+Y +++   CK  G 
Sbjct: 278 CKTGDLTRAESLFNEILGFWKDEDRLKNNDVVTQNEIKNLQPTLVTYTTLIAAYCKFVGV 337

Query: 191 MRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKA----RKVLQFMLSKKDVDRTRI 246
             ++ L ++ I  G +P   T   ++ G C    L +A    R++ +  L    V    I
Sbjct: 338 EESHSLYKKMIMNGIMPDVVTCSSILYGFCRHGKLTEAAVLFREMYEMGLDPNHVSYATI 397

Query: 247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV 306
            N   ++        E  N+   M+      D++T  TV++G  K+G+ +EA +V   ++
Sbjct: 398 INSLFKS----GRVMEAFNLQSQMVVRGISFDIVTCTTVMDGLFKVGKTKEAEEVFETIL 453

Query: 307 AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 366
                AP+ VT++ ++ G   +G+++ A  L+ Q M +    P ++T+++++ G  +   
Sbjct: 454 KLNL-APNCVTYSALLDGYCKLGKMELA-ELVLQKMEKEHVPPNVITFSSIINGYAKKGM 511

Query: 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAA 426
           + +A +V   M+   V+ ++  YAI+IDG  ++ + D A  F  ++        N ++  
Sbjct: 512 LSKAVDVLREMVQRNVMPNTIVYAILIDGYFKAGEQDVADDFCKEMKSRRLEESNVIFDI 571

Query: 427 MIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG 486
           ++  L R G++ EA   + ++   G+ P+IV Y  +IDG  K   +  A  I++EM++  
Sbjct: 572 LLNNLKRVGRMDEARSLIIDMYSKGIDPDIVNYASLIDGYFKEGNQLAALSIVQEMKEKN 631

Query: 487 LNPDAVTWRILDK 499
           +  D V +  L K
Sbjct: 632 IRFDVVAYNALIK 644



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 101/411 (24%), Positives = 190/411 (46%), Gaps = 29/411 (7%)

Query: 117 EGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVS 176
            G V++V  +  DM     V + F+   ++ SLC+ G    A  + Y+     +    V+
Sbjct: 107 SGLVSQVKLMYSDMLFCGVVPDVFSVNVLVHSLCKVGDLDLA--LGYLRNNDVVDIDNVT 164

Query: 177 YNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFML 236
           YN+++ G C+ G   + + LL E ++ G      T  +LV+G C    ++ A  V+  ++
Sbjct: 165 YNTVIWGFCQKGLVDQGFGLLSEMVKRGLCFDSITCNILVKGYCRIGLVQYAEWVMYNLV 224

Query: 237 ----SKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKM 292
               +K  +    + + Y  A+ L+   TEL+       ++  + D++T NT++  FCK 
Sbjct: 225 DGGVTKDVIGLNTLIDGYCEAV-LMSQATELIEN---SWRSDVKIDIVTYNTLLKAFCKT 280

Query: 293 GRIEEALKVLNDMVAG------------------KFCAPDAVTFTTIIFGLLNVGRIQEA 334
           G +  A  + N+++                    K   P  VT+TT+I        ++E+
Sbjct: 281 GDLTRAESLFNEILGFWKDEDRLKNNDVVTQNEIKNLQPTLVTYTTLIAAYCKFVGVEES 340

Query: 335 LNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVID 394
            + LY+ M   G  P +VT +++L G  R  ++ EA  +F  M  +G+  +  +YA +I+
Sbjct: 341 -HSLYKKMIMNGIMPDVVTCSSILYGFCRHGKLTEAAVLFREMYEMGLDPNHVSYATIIN 399

Query: 395 GLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTP 454
            L +S ++ EA      +V      D      ++ GL + GK  EA      ++   + P
Sbjct: 400 SLFKSGRVMEAFNLQSQMVVRGISFDIVTCTTVMDGLFKVGKTKEAEEVFETILKLNLAP 459

Query: 455 NIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
           N V Y+ ++DG CKL     A  +L++M K  + P+ +T+  +   +  +G
Sbjct: 460 NCVTYSALLDGYCKLGKMELAELVLQKMEKEHVPPNVITFSSIINGYAKKG 510



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 57/241 (23%), Positives = 106/241 (43%), Gaps = 8/241 (3%)

Query: 268 VFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLN 327
           +F+  T+    V    T+I  +    R   A    + M A     P    + T+++   N
Sbjct: 48  IFIPPTKTHLYVSFFCTLIRLYLTHDRFSTASATFSHMRALGL-VPTLPFWNTLLYQF-N 105

Query: 328 VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVF--NCMLGIGVVAD 385
              +   + L+Y  M   G  P + + N ++  L ++  ++ A      N ++ I    D
Sbjct: 106 ASGLVSQVKLMYSDMLFCGVVPDVFSVNVLVHSLCKVGDLDLALGYLRNNDVVDI----D 161

Query: 386 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY 445
           + TY  VI G C+   +D+      ++V      D+     ++KG CR G +  A   +Y
Sbjct: 162 NVTYNTVIWGFCQKGLVDQGFGLLSEMVKRGLCFDSITCNILVKGYCRIGLVQYAEWVMY 221

Query: 446 ELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
            LVD GVT +++  N +IDG C+  +  +A +++    ++ +  D VT+  L K     G
Sbjct: 222 NLVDGGVTKDVIGLNTLIDGYCEAVLMSQATELIENSWRSDVKIDIVTYNTLLKAFCKTG 281

Query: 506 N 506
           +
Sbjct: 282 D 282



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 61/273 (22%), Positives = 114/273 (41%), Gaps = 48/273 (17%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTG----------------- 43
           ++  C   +  +A  +  +MKS G +PN V+Y  LI G C+TG                 
Sbjct: 677 INTYCIKGKTEDALDILNEMKSYGIMPNAVTYNILIGGLCKTGFVPTPITHKFLVKAYSR 736

Query: 44  -------------------EMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERAN 84
                              E+     V DEM   G+  + +TY+ L+RG      VE+A 
Sbjct: 737 SEKADKILQIHEKLVASGLELKRQKVVLDEMVKRGISADLVTYNALIRGYCTGSHVEKA- 795

Query: 85  VLMFKLWERMKEE---EDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFA 141
               K + +M  +    +++  N     L ++   E  + E  ++  +M +   V     
Sbjct: 796 ---LKTYSQMFVDGIAPNITTYNTLLGGLSNAGLMEEMMEETEKLVSEMNERGLVPNAAT 852

Query: 142 CGHMIDSLCRSGRNHGASRVVYV-MRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEG 200
              ++    R G N   + ++++ M  +G  P+L +YN ++    K G  + A +LL + 
Sbjct: 853 YDILVSGYGRVG-NRKKTIILHIEMITKGFVPTLKTYNVLISDYAKSGKMIEARELLNDL 911

Query: 201 IQFGYLPSEHTYKVLVEG---LCGESDLEKARK 230
           +  G +P+  TY +L  G   L  E +++++ K
Sbjct: 912 LTKGRIPNSFTYDILTCGWLNLSYEPEIDRSLK 944


>gi|414590862|tpg|DAA41433.1| TPA: hypothetical protein ZEAMMB73_769800 [Zea mays]
          Length = 1295

 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 117/426 (27%), Positives = 205/426 (48%), Gaps = 14/426 (3%)

Query: 13   AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGE---MDVAYKVFDEMRHCGVLPNSLTYSV 69
            A  LF DMKS G  PNV SY+ L+  Y   GE   ++ A+++  EM   GV PN+ TY  
Sbjct: 849  ARSLFDDMKSCGPSPNVCSYSILMSMYTH-GERSCLEEAFELLCEMESNGVRPNATTYGT 907

Query: 70   LVRGVLRTRDVERANVLMFKLWERMK--EEEDLSVNNAAFANLVDSLCREGYVNEVFRIA 127
             + G+ R+R V  A       W+ ++   +     +N  F  ++   C EG V++   + 
Sbjct: 908  YLYGLCRSRQVTSA-------WDFLQTLSQSGGPCSNYCFNAVIHGFCCEGQVDKAIEVF 960

Query: 128  EDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKH 187
              M +   V +  +   ++D LC+ G       ++  M + G+ P+ VSY+S++HGLCK 
Sbjct: 961  HGMKKCGYVPDVHSYSILVDGLCKQGDLLKGYDMLEEMARNGICPNQVSYSSLLHGLCKT 1020

Query: 188  GGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC 247
            G    A ++ +     G+   +  Y +++ G C   DL+    +   M+           
Sbjct: 1021 GQVALALKIFKNLQDHGFEHDQINYSIILHGCCQHLDLKAISDLWFDMIHHNIAPDVYNY 1080

Query: 248  NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA 307
               + ALC  +N  + L V   ML+    P+++T   +++ F K G + EA   L+ M  
Sbjct: 1081 TSLIYALCRHRNLQDALGVFELMLENGLSPNIVTCTILVDSFSKQGLVGEAFLFLDRMHQ 1140

Query: 308  GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRV 367
                 P+   +  +I GL    +     N ++  M +RGY P +V Y+ ++ G  +  ++
Sbjct: 1141 SLGIVPNLCMYRVMINGLCKTNKYSGVWN-VFADMIKRGYVPDVVLYSIIIEGFVKALKL 1199

Query: 368  EEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAM 427
            +EA  +++ ML  GV  +  TY+ +I+GLC  ++L EA     D++    + DN +Y ++
Sbjct: 1200 QEALRLYHKMLDEGVKPNIFTYSSLINGLCNDDRLPEAMGLIRDMIGEDLLLDNVLYTSI 1259

Query: 428  IKGLCR 433
            I   CR
Sbjct: 1260 IACYCR 1265



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 111/448 (24%), Positives = 200/448 (44%), Gaps = 41/448 (9%)

Query: 48   AYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAF 107
            A  +FD+M+ CG  PN  +YS+L+               M+   ER              
Sbjct: 849  ARSLFDDMKSCGPSPNVCSYSILMS--------------MYTHGERS------------- 881

Query: 108  ANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRK 167
                   C E    E F +  +M            G  +  LCRS +   A   +  + +
Sbjct: 882  -------CLE----EAFELLCEMESNGVRPNATTYGTYLYGLCRSRQVTSAWDFLQTLSQ 930

Query: 168  RGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEK 227
             G   S   +N+++HG C  G   +A ++     + GY+P  H+Y +LV+GLC + DL K
Sbjct: 931  SGGPCSNYCFNAVIHGFCCEGQVDKAIEVFHGMKKCGYVPDVHSYSILVDGLCKQGDLLK 990

Query: 228  ARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVIN 287
               +L+ M            +  L  LC        L +   +     + D I  + +++
Sbjct: 991  GYDMLEEMARNGICPNQVSYSSLLHGLCKTGQVALALKIFKNLQDHGFEHDQINYSIILH 1050

Query: 288  GFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGY 347
            G C+   ++    +  DM+     APD   +T++I+ L     +Q+AL + +++M + G 
Sbjct: 1051 GCCQHLDLKAISDLWFDMIHHNI-APDVYNYTSLIYALCRHRNLQDALGV-FELMLENGL 1108

Query: 348  SPGIVTYNAVLRGLFRLRRVEEAKEVFNCM-LGIGVVADSTTYAIVIDGLCESNQLDEAK 406
            SP IVT   ++    +   V EA    + M   +G+V +   Y ++I+GLC++N+     
Sbjct: 1109 SPNIVTCTILVDSFSKQGLVGEAFLFLDRMHQSLGIVPNLCMYRVMINGLCKTNKYSGVW 1168

Query: 407  RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466
              + D++    + D  +Y+ +I+G  ++ K+ EA+   ++++D GV PNI  Y+ +I+G 
Sbjct: 1169 NVFADMIKRGYVPDVVLYSIIIEGFVKALKLQEALRLYHKMLDEGVKPNIFTYSSLINGL 1228

Query: 467  CKLSMKREAYQILREMRKNGLNPDAVTW 494
            C      EA  ++R+M    L  D V +
Sbjct: 1229 CNDDRLPEAMGLIRDMIGEDLLLDNVLY 1256



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 95/387 (24%), Positives = 177/387 (45%), Gaps = 8/387 (2%)

Query: 12   EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
            EA +L  +M+S G  PN  +Y T ++G CR+ ++  A+     +   G   ++  ++ ++
Sbjct: 885  EAFELLCEMESNGVRPNATTYGTYLYGLCRSRQVTSAWDFLQTLSQSGGPCSNYCFNAVI 944

Query: 72   RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP 131
             G      V++A + +F   ++     D+     +++ LVD LC++G + + + + E+M 
Sbjct: 945  HGFCCEGQVDKA-IEVFHGMKKCGYVPDVH----SYSILVDGLCKQGDLLKGYDMLEEMA 999

Query: 132  QGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCM 191
            +      + +   ++  LC++G+   A ++   ++  G     ++Y+ I+HG C+H    
Sbjct: 1000 RNGICPNQVSYSSLLHGLCKTGQVALALKIFKNLQDHGFEHDQINYSIILHGCCQHLDLK 1059

Query: 192  RAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYL 251
                L  + I     P  + Y  L+  LC   +L+ A  V + ML          C I +
Sbjct: 1060 AISDLWFDMIHHNIAPDVYNYTSLIYALCRHRNLQDALGVFELMLENGLSPNIVTCTILV 1119

Query: 252  RALCLIKNPTELLNVLVFMLQT-QCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKF 310
             +        E    L  M Q+    P++     +ING CK  +      V  DM+   +
Sbjct: 1120 DSFSKQGLVGEAFLFLDRMHQSLGIVPNLCMYRVMINGLCKTNKYSGVWNVFADMIKRGY 1179

Query: 311  CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEA 370
              PD V ++ II G +   ++QEAL  LY  M   G  P I TY++++ GL    R+ EA
Sbjct: 1180 -VPDVVLYSIIIEGFVKALKLQEALR-LYHKMLDEGVKPNIFTYSSLINGLCNDDRLPEA 1237

Query: 371  KEVFNCMLGIGVVADSTTYAIVIDGLC 397
              +   M+G  ++ D+  Y  +I   C
Sbjct: 1238 MGLIRDMIGEDLLLDNVLYTSIIACYC 1264



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 82/320 (25%), Positives = 155/320 (48%), Gaps = 7/320 (2%)

Query: 4    LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
             C   +V +A ++F  MK  G+VP+V SY+ L+ G C+ G++   Y + +EM   G+ PN
Sbjct: 947  FCCEGQVDKAIEVFHGMKKCGYVPDVHSYSILVDGLCKQGDLLKGYDMLEEMARNGICPN 1006

Query: 64   SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             ++YS L+ G+ +T  V     L  K+++ + ++     +   ++ ++   C+   +  +
Sbjct: 1007 QVSYSSLLHGLCKTGQV----ALALKIFKNL-QDHGFEHDQINYSIILHGCCQHLDLKAI 1061

Query: 124  FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
              +  DM       + +    +I +LCR      A  V  +M + GL+P++V+   +V  
Sbjct: 1062 SDLWFDMIHHNIAPDVYNYTSLIYALCRHRNLQDALGVFELMLENGLSPNIVTCTILVDS 1121

Query: 184  LCKHGGCMRAYQLLEEGIQ-FGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
              K G    A+  L+   Q  G +P+   Y+V++ GLC  +       V   M+ +  V 
Sbjct: 1122 FSKQGLVGEAFLFLDRMHQSLGIVPNLCMYRVMINGLCKTNKYSGVWNVFADMIKRGYVP 1181

Query: 243  RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
               + +I +          E L +   ML    +P++ T +++ING C   R+ EA+ ++
Sbjct: 1182 DVVLYSIIIEGFVKALKLQEALRLYHKMLDEGVKPNIFTYSSLINGLCNDDRLPEAMGLI 1241

Query: 303  NDMVAGKFCAPDAVTFTTII 322
             DM+ G+    D V +T+II
Sbjct: 1242 RDMI-GEDLLLDNVLYTSII 1260



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 88/360 (24%), Positives = 165/360 (45%), Gaps = 42/360 (11%)

Query: 142  CGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG--GCMR-AYQLLE 198
            C  ++  L    +   A  +   M+  G +P++ SY SI+  +  HG   C+  A++LL 
Sbjct: 833  CNFLLKCLVEGNQIMYARSLFDDMKSCGPSPNVCSY-SILMSMYTHGERSCLEEAFELLC 891

Query: 199  EGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIK 258
            E    G  P+  TY   + GLC    +  A   LQ  LS+     +  C           
Sbjct: 892  EMESNGVRPNATTYGTYLYGLCRSRQVTSAWDFLQ-TLSQSGGPCSNYC----------- 939

Query: 259  NPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTF 318
                                    N VI+GFC  G++++A++V + M    +  PD  ++
Sbjct: 940  -----------------------FNAVIHGFCCEGQVDKAIEVFHGMKKCGY-VPDVHSY 975

Query: 319  TTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCML 378
            + ++ GL   G + +  ++L + M + G  P  V+Y+++L GL +  +V  A ++F  + 
Sbjct: 976  SILVDGLCKQGDLLKGYDMLEE-MARNGICPNQVSYSSLLHGLCKTGQVALALKIFKNLQ 1034

Query: 379  GIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIH 438
              G   D   Y+I++ G C+   L      W D++  +   D Y Y ++I  LCR   + 
Sbjct: 1035 DHGFEHDQINYSIILHGCCQHLDLKAISDLWFDMIHHNIAPDVYNYTSLIYALCRHRNLQ 1094

Query: 439  EAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN-GLNPDAVTWRIL 497
            +A+     ++++G++PNIV   +++D   K  +  EA+  L  M ++ G+ P+   +R++
Sbjct: 1095 DALGVFELMLENGLSPNIVTCTILVDSFSKQGLVGEAFLFLDRMHQSLGIVPNLCMYRVM 1154



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 85/167 (50%), Gaps = 4/167 (2%)

Query: 338  LYQVMPQRGYSPGIVTYNAVLRGLFRLRR--VEEAKEVFNCMLGIGVVADSTTYAIVIDG 395
            L+  M   G SP + +Y+ ++       R  +EEA E+   M   GV  ++TTY   + G
Sbjct: 852  LFDDMKSCGPSPNVCSYSILMSMYTHGERSCLEEAFELLCEMESNGVRPNATTYGTYLYG 911

Query: 396  LCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN 455
            LC S Q+  A  F   +        NY + A+I G C  G++ +A+   + +   G  P+
Sbjct: 912  LCRSRQVTSAWDFLQTLSQSGGPCSNYCFNAVIHGFCCEGQVDKAIEVFHGMKKCGYVPD 971

Query: 456  IVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
            +  Y++++DG CK     + Y +L EM +NG+ P+ V++  L  LHG
Sbjct: 972  VHSYSILVDGLCKQGDLLKGYDMLEEMARNGICPNQVSYSSL--LHG 1016



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 106/228 (46%), Gaps = 4/228 (1%)

Query: 16   LFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVL 75
            L+FDM      P+V +YT+LI+  CR   +  A  VF+ M   G+ PN +T ++LV    
Sbjct: 1064 LWFDMIHHNIAPDVYNYTSLIYALCRHRNLQDALGVFELMLENGLSPNIVTCTILVDSFS 1123

Query: 76   RTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKS 135
            +   V  A    F   +RM +   +  N   +  +++ LC+    + V+ +  DM +   
Sbjct: 1124 KQGLVGEA----FLFLDRMHQSLGIVPNLCMYRVMINGLCKTNKYSGVWNVFADMIKRGY 1179

Query: 136  VNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQ 195
            V +      +I+   ++ +   A R+ + M   G+ P++ +Y+S+++GLC       A  
Sbjct: 1180 VPDVVLYSIIIEGFVKALKLQEALRLYHKMLDEGVKPNIFTYSSLINGLCNDDRLPEAMG 1239

Query: 196  LLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            L+ + I    L     Y  ++   C   +++ A ++ Q    K+ V R
Sbjct: 1240 LIRDMIGEDLLLDNVLYTSIIACYCRRLNMKAAMEMAQRDGKKRCVAR 1287


>gi|225432035|ref|XP_002273694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Vitis vinifera]
          Length = 666

 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 131/507 (25%), Positives = 221/507 (43%), Gaps = 13/507 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D L   +R    + ++ +MK  G  PNV +Y  L+   C+   +D A+K+  EM   G 
Sbjct: 153 LDALLDENRFQMINPIYSNMKKDGMEPNVFTYNILLKALCKNNRVDGAHKLLVEMSSKGC 212

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ ++Y+ L+  + +   V+ A  L       M     + V NA    L++ +C+E   
Sbjct: 213 DPDEVSYTTLISSLCKLGKVKEAREL------AMSFTPSVPVYNA----LINGVCKEYTF 262

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E F++ ++M          +   +I++L  +G    +  V+  M  RG +P+L ++ S+
Sbjct: 263 EEAFQLLDEMMNKGIDPNVISYTTIINALSDAGNVELSLAVLAKMFARGCSPNLHTFTSL 322

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G    GG   A    +  I+ G +P+   Y  L+ GLC +  L  A  V   M     
Sbjct: 323 IKGFFLKGGSHEALDFWDRMIREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGC 382

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
               R  +  +       +      V  +M+   C P+V+    +++  C+     +A  
Sbjct: 383 CPNVRTYSALIDGYAKAGDLDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYC 442

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           ++ +M     C P+ VTF T I GL   GR+  A+ +  Q M   G  P   TYN +L  
Sbjct: 443 LIENMQVEN-CPPNTVTFNTFIKGLCGSGRVDWAIKVFDQ-MGNSGCFPNTTTYNELLDS 500

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L + RR  EA  +   M   G+  +  TY  +I G C +  L EA      +V      D
Sbjct: 501 LLKDRRFGEAFGLVKDMEHRGIELNLVTYNTIIYGYCCAGMLGEALELLGKMVVRGTKPD 560

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
                 +I   C+ GK++ A+  +  L      P+I+ Y  +I G C      EA   LR
Sbjct: 561 AITVNIVIDAYCKQGKVNIAIQLMDRLSAGKWHPDIIAYTSLISGICTHIGVEEAIVYLR 620

Query: 481 EMRKNGLNPDAVTWRILDK-LHGNRGN 506
            M   G++P+  TW +L + L  N G+
Sbjct: 621 RMLSEGISPNVATWNVLVRHLFSNMGH 647



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 124/450 (27%), Positives = 210/450 (46%), Gaps = 17/450 (3%)

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           LTY +++  +   R+++    L+    ++MK E  +S +   F +++ S  R G   +  
Sbjct: 77  LTYQMMIEKLASEREMDCVQYLL----QQMKLE-GISCSEDLFISVIGSYRRAGSSEQAL 131

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
           +    M   +         H++D+L    R    + +   M+K G+ P++ +YN ++  L
Sbjct: 132 KTFYRMQDFRVKPTVKIYNHILDALLDENRFQMINPIYSNMKKDGMEPNVFTYNILLKAL 191

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
           CK+     A++LL E    G  P E +Y  L+  LC    +++AR+     L+       
Sbjct: 192 CKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLISSLCKLGKVKEARE-----LAMSFTPSV 246

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
            + N  +  +C      E   +L  M+     P+VI+  T+IN     G +E +L VL  
Sbjct: 247 PVYNALINGVCKEYTFEEAFQLLDEMMNKGIDPNVISYTTIINALSDAGNVELSLAVLAK 306

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
           M A + C+P+  TFT++I G    G   EAL+  +  M + G  P +V YNA++ GL   
Sbjct: 307 MFA-RGCSPNLHTFTSLIKGFFLKGGSHEALD-FWDRMIREGVVPNVVAYNALMHGLCSK 364

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV- 423
           R + +A  VFN M   G   +  TY+ +IDG  ++  LD A   W+ ++     H N V 
Sbjct: 365 RSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGDLDGASEVWNWMI-THGCHPNVVA 423

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y  M+  LCR+   ++A   +  +      PN V +N  I G C       A ++  +M 
Sbjct: 424 YTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCGSGRVDWAIKVFDQMG 483

Query: 484 KNGLNPDAVTW-RILDKLHGNR--GNDFGL 510
            +G  P+  T+  +LD L  +R  G  FGL
Sbjct: 484 NSGCFPNTTTYNELLDSLLKDRRFGEAFGL 513



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 105/405 (25%), Positives = 184/405 (45%), Gaps = 42/405 (10%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           EA +L  +M ++G  PNV+SYTT+I+     G ++++  V  +M   G  PN  T++ L+
Sbjct: 264 EAFQLLDEMMNKGIDPNVISYTTIINALSDAGNVELSLAVLAKMFARGCSPNLHTFTSLI 323

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP 131
           +G         A       W+RM  E  +  N  A+  L+  LC +  + +   +   M 
Sbjct: 324 KGFFLKGGSHEA----LDFWDRMIRE-GVVPNVVAYNALMHGLCSKRSLGDAVSVFNQME 378

Query: 132 QGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCM 191
                        +ID   ++G   GAS V   M   G  P++V+Y  +V  LC++    
Sbjct: 379 INGCCPNVRTYSALIDGYAKAGDLDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFN 438

Query: 192 RAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK------------- 238
           +AY L+E        P+  T+   ++GLCG   ++ A KV   M +              
Sbjct: 439 QAYCLIENMQVENCPPNTVTFNTFIKGLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELL 498

Query: 239 ----------------KDVDRTRI------CNIYLRALCLIKNPTELLNVLVFMLQTQCQ 276
                           KD++   I       N  +   C      E L +L  M+    +
Sbjct: 499 DSLLKDRRFGEAFGLVKDMEHRGIELNLVTYNTIIYGYCCAGMLGEALELLGKMVVRGTK 558

Query: 277 PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALN 336
           PD IT+N VI+ +CK G++  A+++++ + AGK+  PD + +T++I G+     ++EA+ 
Sbjct: 559 PDAITVNIVIDAYCKQGKVNIAIQLMDRLSAGKW-HPDIIAYTSLISGICTHIGVEEAIV 617

Query: 337 LLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG 381
            L +++ + G SP + T+N ++R LF       A +  + +LG G
Sbjct: 618 YLRRMLSE-GISPNVATWNVLVRHLFSNMGHSGAVQFLDAVLGSG 661


>gi|125569916|gb|EAZ11431.1| hypothetical protein OsJ_01299 [Oryza sativa Japonica Group]
          Length = 563

 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 129/447 (28%), Positives = 210/447 (46%), Gaps = 8/447 (1%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           R+ EA  +  +M+S G    V +   ++     TG    A KVFD M   GV P +  + 
Sbjct: 18  RLPEAADMVLEMRSHGLPLCVETANWVLRVGLETGSFVYARKVFDGMTRAGVSPMNRGFG 77

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
            LV    R   VE  + L+  +W         S++NA    +V SLC +G   +V     
Sbjct: 78  ALVVVCCREGKVEEVDALLAAMWRY-----GFSLDNATCTVVVRSLCEKGRFKDVSEFFR 132

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
            M +  +          ID LC+      A  V+  M  RGL P++ ++ +++ GLCK G
Sbjct: 133 RMLETGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDGLCKIG 192

Query: 189 GCMRAYQLLEEGIQ-FGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC 247
              RA++L  + I+   Y P+ HTY V++ G C E  L +A  +L  M+ +     T   
Sbjct: 193 WTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNTY 252

Query: 248 NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA 307
              +   C   +      ++  M Q    P++ T N VI+GFCK G+I+EA KVL  M  
Sbjct: 253 TTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVLR-MAT 311

Query: 308 GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRV 367
            +    D +T+T +I      G I  AL+ L+  M + G  P I  Y +++    + R++
Sbjct: 312 SQGLKFDKITYTILITEHCKQGHITYALD-LFDRMVENGCCPDIEAYTSLISTYCQQRQM 370

Query: 368 EEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAM 427
           EE+++ F+  L IG++    TY  +I G C+  +   A R ++ +V      D+  Y A+
Sbjct: 371 EESQKFFDKCLMIGLLPTKQTYTSMIAGYCKVGRSTLALRVFERMVQNGCFADSITYGAL 430

Query: 428 IKGLCRSGKIHEAVHFLYELVDSGVTP 454
           I GLC+  ++ EA      ++D  + P
Sbjct: 431 ISGLCKESRLEEAKALYEGMLDKRLVP 457



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 118/464 (25%), Positives = 212/464 (45%), Gaps = 48/464 (10%)

Query: 3   QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
            LC   R  +  + F  M   G  PNVV+YT  I G C+   +  A+ V +EM   G+ P
Sbjct: 117 SLCEKGRFKDVSEFFRRMLETGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKP 176

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           N  T++ L+ G+ +    ERA    F+L+ ++ +      N   +  ++   CREG    
Sbjct: 177 NVYTHTTLIDGLCKIGWTERA----FRLFLKLIKSSSYKPNVHTYTVMIGGYCREG---- 228

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
                                     L R      A  ++  M ++GL P+  +Y +++ 
Sbjct: 229 -------------------------KLAR------AEMLLVRMVEQGLKPNTNTYTTLIG 257

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           G CK G   RA++L+ +  Q G+LP+ +TY  +++G C +  +++A KVL+ M + + + 
Sbjct: 258 GHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVLR-MATSQGLK 316

Query: 243 RTRIC-NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
             +I   I +   C   + T  L++   M++  C PD+    ++I+ +C+  ++EE+ K 
Sbjct: 317 FDKITYTILITEHCKQGHITYALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEESQKF 376

Query: 302 LND-MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
            +  ++ G    P   T+T++I G   VGR   AL  +++ M Q G     +TY A++ G
Sbjct: 377 FDKCLMIGLL--PTKQTYTSMIAGYCKVGRSTLALR-VFERMVQNGCFADSITYGALISG 433

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L +  R+EEAK ++  ML   +V    T   +    C   +   A    D +     +H 
Sbjct: 434 LCKESRLEEAKALYEGMLDKRLVPCEVTRVTLTFEYCRREKTSIAVSVLDRLDKRQQVHT 493

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
             V   +++ L   G +  A  FL +++D     +   Y   I+
Sbjct: 494 VDV---VVRKLSALGDVDAASLFLKKVLDEDYAVDHATYTGFIN 534



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 103/402 (25%), Positives = 177/402 (44%), Gaps = 11/402 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEM-RHCG 59
           +D LC    V +A  +  +M  RG  PNV ++TTLI G C+ G  + A+++F ++ +   
Sbjct: 150 IDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDGLCKIGWTERAFRLFLKLIKSSS 209

Query: 60  VLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGY 119
             PN  TY+V++ G  R   + RA +L+ ++ E     + L  N   +  L+   C+ G 
Sbjct: 210 YKPNVHTYTVMIGGYCREGKLARAEMLLVRMVE-----QGLKPNTNTYTTLIGGHCKGGS 264

Query: 120 VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
            +  F +   M Q   +   +    +ID  C+ G+   A +V+ +   +GL    ++Y  
Sbjct: 265 FDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYTI 324

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++   CK G    A  L +  ++ G  P    Y  L+   C +  +E+++K     L   
Sbjct: 325 LITEHCKQGHITYALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEESQKFFDKCLMIG 384

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
            +   +     +   C +   T  L V   M+Q  C  D IT   +I+G CK  R+EEA 
Sbjct: 385 LLPTKQTYTSMIAGYCKVGRSTLALRVFERMVQNGCFADSITYGALISGLCKESRLEEA- 443

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           K L + +  K   P  VT  T+ F        +E  ++   V+ +      + T + V+R
Sbjct: 444 KALYEGMLDKRLVPCEVTRVTLTFEYCR----REKTSIAVSVLDRLDKRQQVHTVDVVVR 499

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ 401
            L  L  V+ A      +L      D  TY   I+   E+N+
Sbjct: 500 KLSALGDVDAASLFLKKVLDEDYAVDHATYTGFINSCYENNR 541



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 89/346 (25%), Positives = 155/346 (44%), Gaps = 1/346 (0%)

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
           M+ +   +GR   A+ +V  MR  GL   + + N ++    + G  + A ++ +   + G
Sbjct: 9   MVAAFGEAGRLPEAADMVLEMRSHGLPLCVETANWVLRVGLETGSFVYARKVFDGMTRAG 68

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL 264
             P    +  LV   C E  +E+   +L  M           C + +R+LC      ++ 
Sbjct: 69  VSPMNRGFGALVVVCCREGKVEEVDALLAAMWRYGFSLDNATCTVVVRSLCEKGRFKDVS 128

Query: 265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 324
                ML+T   P+V+     I+G CK   +++A  VL +MV G+   P+  T TT+I G
Sbjct: 129 EFFRRMLETGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMV-GRGLKPNVYTHTTLIDG 187

Query: 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 384
           L  +G  + A  L  +++    Y P + TY  ++ G  R  ++  A+ +   M+  G+  
Sbjct: 188 LCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKP 247

Query: 385 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFL 444
           ++ TY  +I G C+    D A    + +     + + Y Y A+I G C+ GKI EA   L
Sbjct: 248 NTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVL 307

Query: 445 YELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD 490
                 G+  + + Y ++I   CK      A  +   M +NG  PD
Sbjct: 308 RMATSQGLKFDKITYTILITEHCKQGHITYALDLFDRMVENGCCPD 353



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 74/253 (29%), Positives = 116/253 (45%), Gaps = 38/253 (15%)

Query: 290 CKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSP 349
           C+ G++EE   +L  M    F + D  T T ++  L   GR ++ ++  ++ M + G  P
Sbjct: 84  CREGKVEEVDALLAAMWRYGF-SLDNATCTVVVRSLCEKGRFKD-VSEFFRRMLETGTPP 141

Query: 350 GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFW 409
            +V Y A + GL + R V++A  V   M+G G+  +  T+  +IDGLC+    + A R +
Sbjct: 142 NVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDGLCKIGWTERAFRLF 201

Query: 410 DDIVWPSNIHDN-YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN------------- 455
             ++  S+   N + Y  MI G CR GK+  A   L  +V+ G+ PN             
Sbjct: 202 LKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLIGGHCK 261

Query: 456 ----------------------IVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVT 493
                                 I  YN VIDG CK    +EAY++LR     GL  D +T
Sbjct: 262 GGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKIT 321

Query: 494 WRILDKLHGNRGN 506
           + IL   H  +G+
Sbjct: 322 YTILITEHCKQGH 334


>gi|357463605|ref|XP_003602084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491132|gb|AES72335.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 579

 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 127/496 (25%), Positives = 228/496 (45%), Gaps = 82/496 (16%)

Query: 3   QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
            L  ++    A  LF  ++  G  P++V+ T L++ YC TG +   + +  ++   G  P
Sbjct: 19  SLVKINHYPTAISLFRQLEFNGIKPSIVTLTILMNCYCHTGGITFLFSILTKILKMGYEP 78

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           NS+T++ L++G                          + +N  A+  L   L  +  V  
Sbjct: 79  NSITFTTLIKG--------------------------MCLNGQAYEAL---LFHDHVVAH 109

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
            F++           ++ +   +++ LC+ G    A ++   +RK  +   +V Y++I+ 
Sbjct: 110 GFKL-----------DQVSYAILMNGLCKMGETRAAMQM---LRKTWVNADVVMYSTIID 155

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
            LCK      AY+L  E I  G  P+ +T+ +LV+ LC      K RK  Q M       
Sbjct: 156 SLCKGKFVTDAYRLYSEMIAKGIFPNVYTFSILVDALC------KDRKGKQAM------- 202

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
                                 N+L  M++   +P+V+T   +++G+C + ++ +AL + 
Sbjct: 203 ----------------------NLLAMMMKKGVKPNVVTYGAIMDGYCLVNQVNKALNIF 240

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
           N MV  +   P+   +  II GL    R+ EA+NL ++ M  +  +P +VTYN ++ GL 
Sbjct: 241 NVMVQ-EGVEPNVWCYNIIINGLCKKKRVDEAMNL-FKEMHWKKINPDVVTYNILIDGLC 298

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
           +L ++  + E+ + M  IG   D  TY  ++  LC+++ LD+A     +I     I  N 
Sbjct: 299 KLGKISTSLELVDEMRSIGKTVDIITYNSLLHALCKNHHLDQAITLVKEIK-DQGIQPNV 357

Query: 423 -VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
             Y  +I GLC+ G++ +A     E++  G    +  YNV+I+G CK  +  EA  +L  
Sbjct: 358 CTYTTLIDGLCKDGRLEDAYVIFQEILTEGYHITVWTYNVMINGLCKKGLFDEALALLSR 417

Query: 482 MRKNGLNPDAVTWRIL 497
           M  N   PDAV++  +
Sbjct: 418 MEDNACIPDAVSYETI 433



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 92/355 (25%), Positives = 182/355 (51%), Gaps = 7/355 (1%)

Query: 144 HMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQF 203
           H++ SL +      A  +   +   G+ PS+V+   +++  C  GG    + +L + ++ 
Sbjct: 15  HILASLVKINHYPTAISLFRQLEFNGIKPSIVTLTILMNCYCHTGGITFLFSILTKILKM 74

Query: 204 GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK-DVDRTRICNIYLRALCLIKNPTE 262
           GY P+  T+  L++G+C      +A      +++    +D+     I +  LC +     
Sbjct: 75  GYEPNSITFTTLIKGMCLNGQAYEALLFHDHVVAHGFKLDQVSYA-ILMNGLCKMGETRA 133

Query: 263 LLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTII 322
            + +L    +T    DV+  +T+I+  CK   + +A ++ ++M+A K   P+  TF+ ++
Sbjct: 134 AMQML---RKTWVNADVVMYSTIIDSLCKGKFVTDAYRLYSEMIA-KGIFPNVYTFSILV 189

Query: 323 FGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGV 382
             L    + ++A+NLL  +M ++G  P +VTY A++ G   + +V +A  +FN M+  GV
Sbjct: 190 DALCKDRKGKQAMNLLAMMM-KKGVKPNVVTYGAIMDGYCLVNQVNKALNIFNVMVQEGV 248

Query: 383 VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVH 442
             +   Y I+I+GLC+  ++DEA   + ++ W     D   Y  +I GLC+ GKI  ++ 
Sbjct: 249 EPNVWCYNIIINGLCKKKRVDEAMNLFKEMHWKKINPDVVTYNILIDGLCKLGKISTSLE 308

Query: 443 FLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            + E+   G T +I+ YN ++   CK     +A  +++E++  G+ P+  T+  L
Sbjct: 309 LVDEMRSIGKTVDIITYNSLLHALCKNHHLDQAITLVKEIKDQGIQPNVCTYTTL 363



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 99/352 (28%), Positives = 164/352 (46%), Gaps = 50/352 (14%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    V +A++L+ +M ++G  PNV +++ L+   C+  +   A  +   M   GV
Sbjct: 154 IDSLCKGKFVTDAYRLYSEMIAKGIFPNVYTFSILVDALCKDRKGKQAMNLLAMMMKKGV 213

Query: 61  LPNSLTYSVLVRGVLRTRDVERA----NVLMFKLWERMKEEEDLSVNNAAFANLVDSLCR 116
            PN +TY  ++ G      V +A    NV++         +E +  N   +  +++ LC+
Sbjct: 214 KPNVVTYGAIMDGYCLVNQVNKALNIFNVMV---------QEGVEPNVWCYNIIINGLCK 264

Query: 117 EGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVS 176
           +  V+E   + ++M   K   +      +ID LC+ G+   +  +V  MR  G T  +++
Sbjct: 265 KKRVDEAMNLFKEMHWKKINPDVVTYNILIDGLCKLGKISTSLELVDEMRSIGKTVDIIT 324

Query: 177 YNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFML 236
           YNS++H LCK+    +A  L++E    G  P+  TY  L++GLC +  LE A  + Q +L
Sbjct: 325 YNSLLHALCKNHHLDQAITLVKEIKDQGIQPNVCTYTTLIDGLCKDGRLEDAYVIFQEIL 384

Query: 237 SKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIE 296
                                   TE  ++ V+           T N +ING CK G  +
Sbjct: 385 ------------------------TEGYHITVW-----------TYNVMINGLCKKGLFD 409

Query: 297 EALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYS 348
           EAL +L+ M     C PDAV++ TII+ L   G   +  N L   M  RG S
Sbjct: 410 EALALLSRM-EDNACIPDAVSYETIIYALSEKGETVKT-NKLLCAMIVRGLS 459


>gi|224713520|gb|ACN62067.1| PPR-816 [Zea mays]
          Length = 816

 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 121/490 (24%), Positives = 236/490 (48%), Gaps = 11/490 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC    + +A      M ++G +P+  +Y  LI+GY  TG+   A +VF EMR   +LP+
Sbjct: 266 LCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPD 325

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +  + L+  + +   ++ A  +   +  + +  +  S     +  +++    +G + ++
Sbjct: 326 VVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFS-----YTIMLNGYATKGCLVDM 380

Query: 124 FRIAEDMPQGKSVNEEFACGH-MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
             +  D+  G  +       + +I +    G    A  +   MR  G+ P +V+Y +++ 
Sbjct: 381 TDLF-DLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIA 439

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVL-QFMLSKKDV 241
            LC+ G    A +   + I  G +P ++ Y  L++G C    L KA++++ + M +   +
Sbjct: 440 ALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRL 499

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
           D     +I +  LC +    +  N+    +     PD +  N +++G+C +G++E+AL+V
Sbjct: 500 DIVFFGSI-INNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRV 558

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
            + MV+     P+ V + T++ G   +GRI E L+ L++ M Q+G  P  + YN ++ GL
Sbjct: 559 FDAMVSAGI-EPNVVGYGTLVNGYCKIGRIDEGLS-LFREMLQKGIKPSTILYNIIIDGL 616

Query: 362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
           F   R   AK  F+ M   G+  +  TY+IV+ GL ++   DEA   + ++   +   D 
Sbjct: 617 FEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDI 676

Query: 422 YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
                MI G+ ++ ++ EA      +  SG+ P  V Y+++I    K  +  EA  +   
Sbjct: 677 ITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCAVTYSIMITNLIKEGLVEEAEDMFSS 736

Query: 482 MRKNGLNPDA 491
           M+  G  PD+
Sbjct: 737 MQNAGCEPDS 746



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 133/501 (26%), Positives = 230/501 (45%), Gaps = 16/501 (3%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVS-----YTTLIHGYCRTGEMDVAYKVFDEMRHCG 59
           CG S    A  LF    SR   P V+S     Y  L+    R    ++A   F ++   G
Sbjct: 85  CG-SGPALAVALFNRAASRAQGPRVLSPTSYTYAILMDCCTRAHRPELALAFFGQLLRTG 143

Query: 60  VLPNSLTYSVLVRGVLRTRDVERA-NVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREG 118
           +  +++  S L++G    +  + A ++L+ +  E     +  S N      L+ SLC +G
Sbjct: 144 LRVDAIIASHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYNI-----LLKSLCNQG 198

Query: 119 YVNEVFRIAEDMPQGKSV--NEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVS 176
              +   +   M +G +V   +  A   +ID   + G  + A  +   M +RG+ P LV+
Sbjct: 199 KSGQADDLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVT 258

Query: 177 YNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFML 236
           Y+S+VH LCK     +A   L + +  G LP   TY  L+ G       ++A +V + M 
Sbjct: 259 YSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMR 318

Query: 237 SKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIE 296
            +  +      N  + +LC      E  +V   M      PDV +   ++NG+   G + 
Sbjct: 319 RQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLV 378

Query: 297 EALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
           + +  L D++ G   AP   TF  +I    N G + +A+ +++  M   G  P +VTY  
Sbjct: 379 D-MTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAM-IIFNEMRDHGVKPHVVTYMT 436

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416
           V+  L R+ ++++A E FN M+  GVV D   Y  +I G C    L +AK    +I+   
Sbjct: 437 VIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNG 496

Query: 417 NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAY 476
              D   + ++I  LC+ G++ +A +     V+ G+ P+ V YN+++DG C +    +A 
Sbjct: 497 MRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKAL 556

Query: 477 QILREMRKNGLNPDAVTWRIL 497
           ++   M   G+ P+ V +  L
Sbjct: 557 RVFDAMVSAGIEPNVVGYGTL 577



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 119/488 (24%), Positives = 227/488 (46%), Gaps = 7/488 (1%)

Query: 10  VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSV 69
           V +A  LF +M  RG  P++V+Y++++H  C+   MD A     +M + GVLP++ TY+ 
Sbjct: 237 VNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNN 296

Query: 70  LVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAED 129
           L+ G   T   + A V +FK   R     D+     A   L+ SLC+ G + E   + + 
Sbjct: 297 LIYGYSSTGQWKEA-VRVFKEMRRQSILPDV----VALNTLMGSLCKYGKIKEARDVFDT 351

Query: 130 MPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG 189
           M       + F+   M++     G     + +  +M   G+ P + ++N ++      G 
Sbjct: 352 MAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGM 411

Query: 190 CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNI 249
             +A  +  E    G  P   TY  ++  LC    ++ A +    M+ +  V      + 
Sbjct: 412 LDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHC 471

Query: 250 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK 309
            ++  C   +  +   ++  ++    + D++   ++IN  CK+GR+ +A  +  D+    
Sbjct: 472 LIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIF-DLTVNV 530

Query: 310 FCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEE 369
              PDAV +  ++ G   VG++++AL + +  M   G  P +V Y  ++ G  ++ R++E
Sbjct: 531 GLHPDAVVYNMLMDGYCLVGKMEKALRV-FDAMVSAGIEPNVVGYGTLVNGYCKIGRIDE 589

Query: 370 AKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIK 429
              +F  ML  G+   +  Y I+IDGL E+ +   AK  + ++       +   Y+ +++
Sbjct: 590 GLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLR 649

Query: 430 GLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNP 489
           GL ++    EA+    EL    V  +I+  N +I G  +     EA  +   + ++GL P
Sbjct: 650 GLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVP 709

Query: 490 DAVTWRIL 497
            AVT+ I+
Sbjct: 710 CAVTYSIM 717



 Score =  161 bits (408), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 121/506 (23%), Positives = 223/506 (44%), Gaps = 42/506 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M  LC   ++ EA  +F  M  +G  P+V SYT +++GY   G +     +FD M   G+
Sbjct: 333 MGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGI 392

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P   T++VL++       +++A ++  ++      +  +  +   +  ++ +LCR G +
Sbjct: 393 APVICTFNVLIKAYANCGMLDKAMIIFNEM-----RDHGVKPHVVTYMTVIAALCRIGKM 447

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           ++       M     V +++A   +I   C  G    A  ++  +   G+   +V + SI
Sbjct: 448 DDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSI 507

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++ LCK G  M A  + +  +  G  P    Y +L++G C    +EKA            
Sbjct: 508 INNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKA------------ 555

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                  L V   M+    +P+V+   T++NG+CK+GRI+E L 
Sbjct: 556 -----------------------LRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLS 592

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +  +M+  K   P  + +  II GL   GR   A  + +  M + G +    TY+ VLRG
Sbjct: 593 LFREMLQ-KGIKPSTILYNIIIDGLFEAGRTVPA-KVKFHEMTESGIAMNKCTYSIVLRG 650

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           LF+ R  +EA  +F  +  + V  D  T   +I G+ ++ +++EAK  +  I     +  
Sbjct: 651 LFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPC 710

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              Y+ MI  L + G + EA      + ++G  P+    N V+    K +    A   L 
Sbjct: 711 AVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAGAYLS 770

Query: 481 EMRKNGLNPDAVTWRILDKLHGNRGN 506
           ++ +   + + +T  +L  L  ++G 
Sbjct: 771 KIDERNFSLEHLTAMLLVDLFSSKGT 796



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 123/238 (51%), Gaps = 3/238 (1%)

Query: 270 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG 329
           +L+T  + D I  + ++ GFC+  R +EAL +L        C PD  ++  ++  L N G
Sbjct: 139 LLRTGLRVDAIIASHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYNILLKSLCNQG 198

Query: 330 RIQEALNLLYQVMPQRGY--SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADST 387
           +  +A +LL ++M + G   SP +V YN V+ G F+   V +A ++F  M+  G+  D  
Sbjct: 199 KSGQADDLL-RMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLV 257

Query: 388 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYEL 447
           TY+ V+  LC++  +D+A+ F   +V    + DN+ Y  +I G   +G+  EAV    E+
Sbjct: 258 TYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEM 317

Query: 448 VDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
               + P++V  N ++   CK    +EA  +   M   G NPD  ++ I+   +  +G
Sbjct: 318 RRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKG 375



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 5/117 (4%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           RV EA  LF  +   G VP  V+Y+ +I    + G ++ A  +F  M++ G  P+S   +
Sbjct: 691 RVEEAKDLFASISRSGLVPCAVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLN 750

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFR 125
            +VR +L+  ++ RA   + K+ ER     + S+ +     LVD    +G   E  R
Sbjct: 751 HVVRELLKKNEIVRAGAYLSKIDER-----NFSLEHLTAMLLVDLFSSKGTCREQIR 802


>gi|356561677|ref|XP_003549106.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Glycine max]
          Length = 511

 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 119/473 (25%), Positives = 228/473 (48%), Gaps = 44/473 (9%)

Query: 16  LFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVL 75
           LF   +  G  P++ + + LI+ +C    + +A+ VF  +   G  PN++T + L++G+ 
Sbjct: 79  LFKQFEPNGITPDLCTLSILINCFCHQAHITLAFSVFANILKRGFHPNAITLNTLIKGLC 138

Query: 76  RTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKS 135
              ++++A     +L       +   ++  ++  L++ LC+ G    V R+   + +G S
Sbjct: 139 FRGEIKKALYFHDQLVA-----QGFQLDQVSYGTLINGLCKTGETKAVARLLRKL-EGHS 192

Query: 136 VNEEFAC-GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAY 194
           V  +      +I+SLC++     A  V   M  +G++P +V+Y +++HG C  G    A+
Sbjct: 193 VKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGFCIMGHLKEAF 252

Query: 195 QLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRAL 254
            LL E       P+  T+ +L++ L  E  +++A+ +L  M+                  
Sbjct: 253 SLLNEMKLKNINPNVCTFNILIDALSKEGKMKEAKILLAVMMKA---------------- 296

Query: 255 CLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPD 314
           C+                   +PDV T N++I+G+  +  ++ A  V   M A +   PD
Sbjct: 297 CI-------------------KPDVFTYNSLIDGYFLVDEVKHAKYVFYSM-AQRGVTPD 336

Query: 315 AVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVF 374
              +T +I GL     + EA++L ++ M  +   P IVTYN+++ GL +   +E A  + 
Sbjct: 337 VQCYTNMINGLCKTKMVDEAMSL-FEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALC 395

Query: 375 NCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRS 434
             M   G+  D  +Y I++DGLC+S +L++AK  +  ++      + + Y  +I  LC++
Sbjct: 396 KRMKEQGIQPDVYSYTILLDGLCKSGRLEDAKEIFQRLLAKGYHLNVHAYTVLINRLCKA 455

Query: 435 GKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
           G   EA+    ++ D G  P+ V ++++I    +     +A +ILREM   GL
Sbjct: 456 GFFDEALDLKSKMEDKGCMPDAVTFDIIIRALFEKDENDKAEKILREMIARGL 508



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 102/391 (26%), Positives = 189/391 (48%), Gaps = 2/391 (0%)

Query: 107 FANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMR 166
           F N++ SL    +   V  + +         +      +I+  C       A  V   + 
Sbjct: 60  FNNILSSLVNNKHYPTVISLFKQFEPNGITPDLCTLSILINCFCHQAHITLAFSVFANIL 119

Query: 167 KRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLE 226
           KRG  P+ ++ N+++ GLC  G   +A    ++ +  G+   + +Y  L+ GLC   + +
Sbjct: 120 KRGFHPNAITLNTLIKGLCFRGEIKKALYFHDQLVAQGFQLDQVSYGTLINGLCKTGETK 179

Query: 227 KARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVI 286
              ++L+ +          + N  + +LC  K   +  +V   M+     PDV+T  T+I
Sbjct: 180 AVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLI 239

Query: 287 NGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
           +GFC MG ++EA  +LN+M   K   P+  TF  +I  L   G+++EA  +L  VM +  
Sbjct: 240 HGFCIMGHLKEAFSLLNEM-KLKNINPNVCTFNILIDALSKEGKMKEA-KILLAVMMKAC 297

Query: 347 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
             P + TYN+++ G F +  V+ AK VF  M   GV  D   Y  +I+GLC++  +DEA 
Sbjct: 298 IKPDVFTYNSLIDGYFLVDEVKHAKYVFYSMAQRGVTPDVQCYTNMINGLCKTKMVDEAM 357

Query: 407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466
             ++++   + I D   Y ++I GLC++  +  A+     + + G+ P++  Y +++DG 
Sbjct: 358 SLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALCKRMKEQGIQPDVYSYTILLDGL 417

Query: 467 CKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           CK     +A +I + +   G + +   + +L
Sbjct: 418 CKSGRLEDAKEIFQRLLAKGYHLNVHAYTVL 448



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 81/308 (26%), Positives = 156/308 (50%), Gaps = 7/308 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC    +G+A  ++ +M  +G  P+VV+YTTLIHG+C  G +  A+ + +EM+   +
Sbjct: 204 INSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGFCIMGHLKEAFSLLNEMKLKNI 263

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN  T+++L+  + +   ++ A +L+  + +   + +  + N     +L+D       V
Sbjct: 264 NPNVCTFNILIDALSKEGKMKEAKILLAVMMKACIKPDVFTYN-----SLIDGYFLVDEV 318

Query: 121 NEVFRIAEDMPQGKSVNEEFAC-GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
                +   M Q + V  +  C  +MI+ LC++     A  +   M+ + + P +V+YNS
Sbjct: 319 KHAKYVFYSMAQ-RGVTPDVQCYTNMINGLCKTKMVDEAMSLFEEMKHKNMIPDIVTYNS 377

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++ GLCK+    RA  L +   + G  P  ++Y +L++GLC    LE A+++ Q +L+K 
Sbjct: 378 LIDGLCKNHHLERAIALCKRMKEQGIQPDVYSYTILLDGLCKSGRLEDAKEIFQRLLAKG 437

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                    + +  LC      E L++   M    C PD +T + +I    +    ++A 
Sbjct: 438 YHLNVHAYTVLINRLCKAGFFDEALDLKSKMEDKGCMPDAVTFDIIIRALFEKDENDKAE 497

Query: 300 KVLNDMVA 307
           K+L +M+A
Sbjct: 498 KILREMIA 505



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 101/383 (26%), Positives = 172/383 (44%), Gaps = 45/383 (11%)

Query: 6   GLSRVGEAH---KLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           GL + GE     +L   ++     P+VV Y T+I+  C+   +  A  V+ EM   G+ P
Sbjct: 171 GLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISP 230

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           + +TY+ L+ G      ++ A    F L   MK  ++++ N   F  L+D+L +EG + E
Sbjct: 231 DVVTYTTLIHGFCIMGHLKEA----FSLLNEMK-LKNINPNVCTFNILIDALSKEGKMKE 285

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
              +   M +     + F    +ID          A  V Y M +RG+TP +  Y ++++
Sbjct: 286 AKILLAVMMKACIKPDVFTYNSLIDGYFLVDEVKHAKYVFYSMAQRGVTPDVQCYTNMIN 345

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           GLCK      A  L EE      +P   TY  L++GLC    LE                
Sbjct: 346 GLCKTKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLE---------------- 389

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
                    RA+ L K           M +   QPDV +   +++G CK GR+E+A ++ 
Sbjct: 390 ---------RAIALCKR----------MKEQGIQPDVYSYTILLDGLCKSGRLEDAKEIF 430

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
             ++A  +   +   +T +I  L   G   EAL+L  + M  +G  P  VT++ ++R LF
Sbjct: 431 QRLLAKGYHL-NVHAYTVLINRLCKAGFFDEALDLKSK-MEDKGCMPDAVTFDIIIRALF 488

Query: 363 RLRRVEEAKEVFNCMLGIGVVAD 385
                ++A+++   M+  G++ +
Sbjct: 489 EKDENDKAEKILREMIARGLLKE 511



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 54/93 (58%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   R+ +A ++F  + ++G+  NV +YT LI+  C+ G  D A  +  +M   G 
Sbjct: 414 LDGLCKSGRLEDAKEIFQRLLAKGYHLNVHAYTVLINRLCKAGFFDEALDLKSKMEDKGC 473

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWER 93
           +P+++T+ +++R +    + ++A  ++ ++  R
Sbjct: 474 MPDAVTFDIIIRALFEKDENDKAEKILREMIAR 506


>gi|449469290|ref|XP_004152354.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Cucumis sativus]
 gi|449484425|ref|XP_004156880.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Cucumis sativus]
          Length = 834

 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 128/495 (25%), Positives = 229/495 (46%), Gaps = 44/495 (8%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R+ +  KL      +G VPN+V Y TLI GYC+ GE++ AYK+F +++  G +P 
Sbjct: 218 LCLKGRIEDGIKLIESRWGKGCVPNIVFYNTLIDGYCKKGEVESAYKLFKKLKMKGFIPT 277

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             T+  LV G  +    E  ++L+ ++ +R      LSVN   + N++D+  + G+    
Sbjct: 278 LQTFGSLVNGFCKMGMFEAIDLLLLEMKDR-----GLSVNVQMYNNIIDARYKLGF---- 328

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
                D+    ++ E      M ++ C                     P LV+YN++++ 
Sbjct: 329 -----DIKAKDTLKE------MSENCCE--------------------PDLVTYNTLINH 357

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVL-QFMLSKKDVD 242
            C  G    A +LLE+ I+ G  P++ TY  LV G C + +  KA   L +   S  +VD
Sbjct: 358 FCSRGEVEEAEKLLEQTIRRGLAPNKLTYTPLVHGYCKQGEYTKATDYLIEMSTSGLEVD 417

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
                 + +  L +       L +   M+     PD    N ++NG  K G++  A  +L
Sbjct: 418 MISYGAL-IHGLVVAGEVDTALTIRDRMMNRGILPDANIYNVLMNGLFKKGKLSMAKVML 476

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
            +M+     APDA  + T++ G +  G + EA  L +Q++ ++G  PG+V YN +++G  
Sbjct: 477 TEMLDQNI-APDAFVYATLVDGFIRHGNLDEAKKL-FQLIIEKGLDPGVVGYNVMIKGFS 534

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
           +   ++ A    + M     V D  T++ +IDG  + + ++   + +  +V  +   +  
Sbjct: 535 KSGMMDNAILCIDKMRRAHHVPDIFTFSTIIDGYVKQHNMNAVLKIFGLMVKQNCKPNVV 594

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
            Y ++I G CR G+   A      +   G+ P++V Y+++I   CK +   +A      M
Sbjct: 595 TYTSLINGYCRKGETKMAEKLFSMMRSHGLKPSVVTYSILIGSFCKEAKLGKAVSYFELM 654

Query: 483 RKNGLNPDAVTWRIL 497
             N   P+   +  L
Sbjct: 655 LINKCTPNDAAFHYL 669



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 116/480 (24%), Positives = 226/480 (47%), Gaps = 39/480 (8%)

Query: 19  DMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEM-RHCGVLPNSLTYSVLVRGVLRT 77
           +MK++  +P   + + ++  Y   G +D A +V+  + +    LP++   + L+  +++ 
Sbjct: 123 EMKTKETIPTREALSDVLCAYADVGLVDKALEVYHGVVKLHNSLPSTYACNSLLNLLVKH 182

Query: 78  RDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVN 137
           R +E A+    +L++ M + ++            D +C + Y   +              
Sbjct: 183 RRIETAH----QLYDEMIDRDN-----------GDDICVDNYTTSI-------------- 213

Query: 138 EEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLL 197
                  M+  LC  GR     +++     +G  P++V YN+++ G CK G    AY+L 
Sbjct: 214 -------MVKGLCLKGRIEDGIKLIESRWGKGCVPNIVFYNTLIDGYCKKGEVESAYKLF 266

Query: 198 EEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLI 257
           ++    G++P+  T+  LV G C     E    +L  M  +      ++ N  + A   +
Sbjct: 267 KKLKMKGFIPTLQTFGSLVNGFCKMGMFEAIDLLLLEMKDRGLSVNVQMYNNIIDARYKL 326

Query: 258 KNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVT 317
               +  + L  M +  C+PD++T NT+IN FC  G +EEA K+L   +  +  AP+ +T
Sbjct: 327 GFDIKAKDTLKEMSENCCEPDLVTYNTLINHFCSRGEVEEAEKLLEQTIR-RGLAPNKLT 385

Query: 318 FTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCM 377
           +T ++ G    G   +A + L + M   G    +++Y A++ GL     V+ A  + + M
Sbjct: 386 YTPLVHGYCKQGEYTKATDYLIE-MSTSGLEVDMISYGALIHGLVVAGEVDTALTIRDRM 444

Query: 378 LGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKI 437
           +  G++ D+  Y ++++GL +  +L  AK    +++  +   D +VYA ++ G  R G +
Sbjct: 445 MNRGILPDANIYNVLMNGLFKKGKLSMAKVMLTEMLDQNIAPDAFVYATLVDGFIRHGNL 504

Query: 438 HEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            EA      +++ G+ P +V YNV+I G  K  M   A   + +MR+    PD  T+  +
Sbjct: 505 DEAKKLFQLIIEKGLDPGVVGYNVMIKGFSKSGMMDNAILCIDKMRRAHHVPDIFTFSTI 564



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 119/520 (22%), Positives = 230/520 (44%), Gaps = 31/520 (5%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C    V  A+KLF  +K +G +P + ++ +L++G+C+ G  +    +  EM+  G+
Sbjct: 250 IDGYCKKGEVESAYKLFKKLKMKGFIPTLQTFGSLVNGFCKMGMFEAIDLLLLEMKDRGL 309

Query: 61  LPNSLTYSVLVRGVLRTR-DVERANVLMFKLWERMKE---EEDLSVNNAAFANLVDSLCR 116
             N   Y+ ++    +   D++  + L     + M E   E DL   N     L++  C 
Sbjct: 310 SVNVQMYNNIIDARYKLGFDIKAKDTL-----KEMSENCCEPDLVTYNT----LINHFCS 360

Query: 117 EGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVS 176
            G V E  ++ E   +      +     ++   C+ G    A+  +  M   GL   ++S
Sbjct: 361 RGEVEEAEKLLEQTIRRGLAPNKLTYTPLVHGYCKQGEYTKATDYLIEMSTSGLEVDMIS 420

Query: 177 YNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFML 236
           Y +++HGL   G    A  + +  +  G LP  + Y VL+ GL  +  L  A+ +L  ML
Sbjct: 421 YGALIHGLVVAGEVDTALTIRDRMMNRGILPDANIYNVLMNGLFKKGKLSMAKVMLTEML 480

Query: 237 SKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIE 296
            +       +    +       N  E   +   +++    P V+  N +I GF K G ++
Sbjct: 481 DQNIAPDAFVYATLVDGFIRHGNLDEAKKLFQLIIEKGLDPGVVGYNVMIKGFSKSGMMD 540

Query: 297 EALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
            A+  ++ M       PD  TF+TII G +    +   L  ++ +M ++   P +VTY +
Sbjct: 541 NAILCIDKMRRAHH-VPDIFTFSTIIDGYVKQHNMNAVLK-IFGLMVKQNCKPNVVTYTS 598

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416
           ++ G  R    + A+++F+ M   G+     TY+I+I   C+  +L +A  +++ ++   
Sbjct: 599 LINGYCRKGETKMAEKLFSMMRSHGLKPSVVTYSILIGSFCKEAKLGKAVSYFELMLINK 658

Query: 417 NIHDNYVYAAMIKGLCRS---------GKIHEAVHFLYE-----LVDSGVTPNIVCYNVV 462
              ++  +  ++ G   +           +HE    ++E     ++  G T     YN +
Sbjct: 659 CTPNDAAFHYLVNGFTNTKATAVSREPNNLHENSRSMFEDFFSRMIGDGWTQKAAAYNCI 718

Query: 463 IDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
           +   C+  M + A Q+  +M   GL  DAV++  L  +HG
Sbjct: 719 LICLCQQRMVKTALQLRNKMLAFGLCSDAVSFVAL--IHG 756



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 110/473 (23%), Positives = 206/473 (43%), Gaps = 29/473 (6%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C    V EA KL      RG  PN ++YT L+HGYC+ GE   A     EM   G+
Sbjct: 355 INHFCSRGEVEEAEKLLEQTIRRGLAPNKLTYTPLVHGYCKQGEYTKATDYLIEMSTSGL 414

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             + ++Y  L+ G++   +V+ A      + +RM     L   N  +  L++ L ++G +
Sbjct: 415 EVDMISYGALIHGLVVAGEVDTA----LTIRDRMMNRGILPDAN-IYNVLMNGLFKKGKL 469

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +    +  +M       + F    ++D   R G    A ++  ++ ++GL P +V YN +
Sbjct: 470 SMAKVMLTEMLDQNIAPDAFVYATLVDGFIRHGNLDEAKKLFQLIIEKGLDPGVVGYNVM 529

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK-- 238
           + G  K G    A   +++  +  ++P   T+  +++G   + ++    K+   M+ +  
Sbjct: 530 IKGFSKSGMMDNAILCIDKMRRAHHVPDIFTFSTIIDGYVKQHNMNAVLKIFGLMVKQNC 589

Query: 239 --KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQ-CQPDVITLNTVINGFCKMGRI 295
               V  T + N Y R     K  T++   L  M+++   +P V+T + +I  FCK  ++
Sbjct: 590 KPNVVTYTSLINGYCR-----KGETKMAEKLFSMMRSHGLKPSVVTYSILIGSFCKEAKL 644

Query: 296 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRI---QEALNL----------LYQVM 342
            +A+     M+  K C P+   F  ++ G  N       +E  NL           +  M
Sbjct: 645 GKAVSYFELMLINK-CTPNDAAFHYLVNGFTNTKATAVSREPNNLHENSRSMFEDFFSRM 703

Query: 343 PQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQL 402
              G++     YN +L  L + R V+ A ++ N ML  G+ +D+ ++  +I G+C     
Sbjct: 704 IGDGWTQKAAAYNCILICLCQQRMVKTALQLRNKMLAFGLCSDAVSFVALIHGICLEGNS 763

Query: 403 DEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN 455
            E +      +    +     Y+  +      G I EA   L  ++   V+PN
Sbjct: 764 KEWRNMISCDLNEGELQIALKYSLELDKFIPEGGISEASGILQAMIKGYVSPN 816



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 109/240 (45%), Gaps = 5/240 (2%)

Query: 270 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG 329
           M   +  P    L+ V+  +  +G +++AL+V + +V      P      +++  L+   
Sbjct: 124 MKTKETIPTREALSDVLCAYADVGLVDKALEVYHGVVKLHNSLPSTYACNSLLNLLVKHR 183

Query: 330 RIQEALNLLYQVMPQRGYSPGI----VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 385
           RI+ A + LY  M  R     I     T + +++GL    R+E+  ++     G G V +
Sbjct: 184 RIETA-HQLYDEMIDRDNGDDICVDNYTTSIMVKGLCLKGRIEDGIKLIESRWGKGCVPN 242

Query: 386 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY 445
              Y  +IDG C+  +++ A + +  +     I     + +++ G C+ G        L 
Sbjct: 243 IVFYNTLIDGYCKKGEVESAYKLFKKLKMKGFIPTLQTFGSLVNGFCKMGMFEAIDLLLL 302

Query: 446 ELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
           E+ D G++ N+  YN +ID   KL    +A   L+EM +N   PD VT+  L     +RG
Sbjct: 303 EMKDRGLSVNVQMYNNIIDARYKLGFDIKAKDTLKEMSENCCEPDLVTYNTLINHFCSRG 362


>gi|449446442|ref|XP_004140980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Cucumis sativus]
          Length = 1000

 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 124/522 (23%), Positives = 236/522 (45%), Gaps = 27/522 (5%)

Query: 6   GLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSL 65
            L +VG+  +    ++    VPN + Y  +I G C     + A    + MR    +PN  
Sbjct: 285 ALCKVGKWREALSLIEKEDFVPNTILYNKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQ 344

Query: 66  TYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFR 125
           TY +L+ G L  + + R   ++      M   E    +   F +LV + C+    +  ++
Sbjct: 345 TYRILLCGCLNKKQLGRCKRIL-----SMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYK 399

Query: 126 IAEDMPQGKSVNEEFACGHMIDSLCRSGRNHG------ASRVVYVMRKRGLTPSLVSYNS 179
           + + M + +          +I S+C  G   G      A +    M   G   + V+  S
Sbjct: 400 LLKKMEKCECKPGYVVYNILIGSICSGGELPGPVTFELAEKAYNEMLSAGTVLNKVNVVS 459

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
               LC  G   +AY+++ E +  G++P   TY  ++  LC  S +E A  + + M    
Sbjct: 460 FARCLCGFGKFEKAYKVIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTG 519

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
            V       I +          +  N L  M++  C+P V+T  T+I+ + K  ++  A 
Sbjct: 520 VVPDVYTYTILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVAN 579

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEA---------------LNLLYQVMPQ 344
           ++   M+A K C P+ +T+T +I G    G I++A               +++ +++   
Sbjct: 580 ELFELMIA-KGCFPNVITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNN 638

Query: 345 RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 404
               P +VTY A++ GL +  +V++A+++   M   G   ++  Y  +IDG C++ +LDE
Sbjct: 639 VAEKPNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDE 698

Query: 405 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
           A+  +  +V      + Y Y+++I  L +  ++   +  L +++++   PNIV Y  +ID
Sbjct: 699 AQEVFHKMVEHGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMID 758

Query: 465 GACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           G  K++   EAY+++  M + G  P+ VT+  +    G  G 
Sbjct: 759 GLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGK 800



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 133/529 (25%), Positives = 227/529 (42%), Gaps = 54/529 (10%)

Query: 35  LIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWE-- 92
           LI   CR G  +VA +    ++  G  P  +TY+ LV+  LR   ++ A ++  ++ E  
Sbjct: 212 LIRKCCRNGLWNVALEELGRLKDFGYKPTRMTYNALVQVFLRADKLDTAQLVHREMSELG 271

Query: 93  -------------------------RMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIA 127
                                     + E+ED   N   +  ++  LC   +  E     
Sbjct: 272 LSMDEFTLGFFAQALCKVGKWREALSLIEKEDFVPNTILYNKMISGLCEASFFEEAMDFL 331

Query: 128 EDMPQGKSVNEEFACGHMIDSLCRSGRNHG-ASRVVYVMRKRGLTPSLVSYNSIVHGLCK 186
             M +  S         ++   C + +  G   R++ +M   G  PS   +NS+VH  CK
Sbjct: 332 NRM-RSTSCIPNVQTYRILLCGCLNKKQLGRCKRILSMMIAEGCYPSYTIFNSLVHAYCK 390

Query: 187 HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLC------GESDLEKARKVLQFMLSKKD 240
                 AY+LL++  +    P    Y +L+  +C      G    E A K    MLS   
Sbjct: 391 SDDFSYAYKLLKKMEKCECKPGYVVYNILIGSICSGGELPGPVTFELAEKAYNEMLSAGT 450

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           V        + R LC      +   V+  M+     PD  T + VI   C   R+E A  
Sbjct: 451 VLNKVNVVSFARCLCGFGKFEKAYKVIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFF 510

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +  +M  G    PD  T+T +I      G I++A N L + M + G  P +VTY  ++  
Sbjct: 511 LFKEM-KGTGVVPDVYTYTILIDCFSKAGIIKQAHNWLDE-MVRDGCEPTVVTYTTLIHA 568

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
             + ++V  A E+F  M+  G   +  TY  +IDG C+S  +++A + +  +   ++I D
Sbjct: 569 YLKAKKVSVANELFELMIAKGCFPNVITYTALIDGYCKSGNIEKACQIYARMRGDADIPD 628

Query: 421 ---------------NYV-YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
                          N V Y A++ GLC++ K+ +A   L  +   G  PN + Y+ +ID
Sbjct: 629 VDMYFKIKNNVAEKPNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALID 688

Query: 465 GACKLSMKREAYQILREMRKNGLNPDAVTW-RILDKLHGNRGNDFGLRI 512
           G CK +   EA ++  +M ++G NP+  T+  ++D+L  ++  D  L++
Sbjct: 689 GFCKAAKLDEAQEVFHKMVEHGYNPNVYTYSSLIDRLFKDKRLDLVLKV 737



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 127/498 (25%), Positives = 230/498 (46%), Gaps = 37/498 (7%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC  SRV  A  LF +MK  G VP+V +YT LI  + + G +  A+   DEM   G  P 
Sbjct: 499 LCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNWLDEMVRDGCEPT 558

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY+ L+   L+ + V  AN    +L+E M  +     N   +  L+D  C+ G + + 
Sbjct: 559 VVTYTTLIHAYLKAKKVSVAN----ELFELMIAKGCFP-NVITYTALIDGYCKSGNIEKA 613

Query: 124 FRI------AEDMPQ-------GKSVNEE---FACGHMIDSLCRSGRNHGASRVVYVMRK 167
            +I        D+P          +V E+      G ++D LC++ +   A  ++  M  
Sbjct: 614 CQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAHKVKDARDLLETMFV 673

Query: 168 RGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEK 227
            G  P+ + Y++++ G CK      A ++  + ++ GY P+ +TY  L++ L  +  L+ 
Sbjct: 674 DGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVEHGYNPNVYTYSSLIDRLFKDKRLDL 733

Query: 228 ARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVIN 287
             KVL  ML         I    +  L  +    E   +++ M +  C+P+V+T   +I+
Sbjct: 734 VLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMID 793

Query: 288 GFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGY 347
           GF K G++++ L++  +M   K CAP+ VT+T +I      G + EA  LL + M Q  +
Sbjct: 794 GFGKAGKVDKCLELFREM-GSKGCAPNFVTYTVLINHCCATGHLDEAYALLEE-MKQTYW 851

Query: 348 SPGIVTYNAVLRG-----LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQL 402
              + +Y  V+ G     +  L  +EE ++        G       Y ++ID   ++ +L
Sbjct: 852 PKHVSSYCKVIEGYKREFILSLGLLEEVEKN-------GSAPIILLYKVLIDNFVKAGRL 904

Query: 403 DEAKRFWDDIVWP--SNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYN 460
           + A     +++    S      +Y ++I     + KI  A    Y+++  GV P++  + 
Sbjct: 905 EVALELHKEVISASMSMAAKKNLYTSLIYSFSYASKIGHAFELFYDMIRDGVIPDLGTFV 964

Query: 461 VVIDGACKLSMKREAYQI 478
            ++ G  ++    EA Q+
Sbjct: 965 HLLMGLIRVRRWEEALQL 982



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 95/378 (25%), Positives = 166/378 (43%), Gaps = 52/378 (13%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   +V +A  L   M   G  PN + Y  LI G+C+  ++D A +VF +M   G 
Sbjct: 652 VDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVEHGY 711

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN  TYS L+  + + + ++    L+ K+  +M E       N+   N+V         
Sbjct: 712 NPNVYTYSSLIDRLFKDKRLD----LVLKVLSKMLE-------NSCAPNIV--------- 751

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                                   MID L +  +   A +++ +M ++G  P++V+Y ++
Sbjct: 752 --------------------IYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAM 791

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM----L 236
           + G  K G   +  +L  E    G  P+  TY VL+   C    L++A  +L+ M     
Sbjct: 792 IDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTVLINHCCATGHLDEAYALLEEMKQTYW 851

Query: 237 SKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIE 296
            K      ++   Y R   L       L +L  + +    P ++    +I+ F K GR+E
Sbjct: 852 PKHVSSYCKVIEGYKREFILS------LGLLEEVEKNGSAPIILLYKVLIDNFVKAGRLE 905

Query: 297 EALKVLNDMVAGKFC-APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN 355
            AL++  ++++     A     +T++I+      +I  A  L Y  M + G  P + T+ 
Sbjct: 906 VALELHKEVISASMSMAAKKNLYTSLIYSFSYASKIGHAFELFYD-MIRDGVIPDLGTFV 964

Query: 356 AVLRGLFRLRRVEEAKEV 373
            +L GL R+RR EEA ++
Sbjct: 965 HLLMGLIRVRRWEEALQL 982


>gi|413926774|gb|AFW66706.1| hypothetical protein ZEAMMB73_789977 [Zea mays]
          Length = 642

 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 147/529 (27%), Positives = 242/529 (45%), Gaps = 77/529 (14%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R+  A ++F  M  R    N  S+  L  GYCR G    A KV D M       N
Sbjct: 155 LCDAGRMELAQRVFEAMPVR----NEFSFGILARGYCRAGRSVDALKVLDGMPSM----N 206

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +  + +V G  +   VE A     +L ERM+ +  L+ N   F + + +LC+ G V + 
Sbjct: 207 LVVCNTVVAGFCKEGLVEEAE----RLVERMRVQ-GLAPNVVTFNSRISALCKAGRVLDA 261

Query: 124 FRIAEDMPQ----GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           +RI +DM +    G    ++     M+   C +G    A  +V +MR  G    + SYN 
Sbjct: 262 YRIFKDMQEDWQHGLPRPDQVTFDVMLSGFCDAGFVDEARVLVDIMRCGGFLRRVESYNR 321

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
            + GL ++G    A++LL E       P+ +TY ++V GLC E     AR+V  F+ S  
Sbjct: 322 WLSGLVRNGRVGEAHELLREMAHERIHPNSYTYNIIVSGLCKEGKAFDARRVENFIRS-- 379

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                                     V+         PDV+T  ++++ +C  G I  A 
Sbjct: 380 -------------------------GVM--------SPDVVTYTSLLHAYCSKGNIAAAN 406

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           ++L++M A K CAP++ T+  ++  L   GR  EA  LL + M ++GYS      N ++ 
Sbjct: 407 RILDEM-AQKGCAPNSFTYNVLLQSLWRAGRTTEAERLL-ERMSEKGYSLDTAGCNIIID 464

Query: 360 GLFRLRRVEEAKEVFNCM----------LG---IGVVADST----------TYAIVIDGL 396
           GL R  +++ A  + + M          LG   + VV+DS+          TY+I+I  L
Sbjct: 465 GLCRNSKLDVAMGIVDGMWEEGSTALGRLGNSFLSVVSDSSISQRCLPDRITYSILISAL 524

Query: 397 CESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNI 456
           C+  + DEAK+   +++      D+ +Y   I G C+ GK   A+  L ++   G  P+ 
Sbjct: 525 CKEGRFDEAKKKLLEMIVKDISPDSVIYDTFIHGYCKHGKTSLAIKVLRDMEKKGCNPST 584

Query: 457 VCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
             YN++I G  +     E  +++ EM + G++P+ +T+  L K    +G
Sbjct: 585 RTYNLLIRGFEEKHKSDEIMKLMSEMEEKGVSPNVLTYNSLIKSFCQQG 633



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 114/428 (26%), Positives = 195/428 (45%), Gaps = 38/428 (8%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMR----HCG 59
            C    V EA +L   M+ +G  PNVV++ + I   C+ G +  AY++F +M+    H  
Sbjct: 217 FCKEGLVEEAERLVERMRVQGLAPNVVTFNSRISALCKAGRVLDAYRIFKDMQEDWQHGL 276

Query: 60  VLPNSLTYSVLVRGVLRTRDVERANVL--MFKLWERMKEEEDLSVNNAAFANLVDSLCRE 117
             P+ +T+ V++ G      V+ A VL  + +    ++  E       ++   +  L R 
Sbjct: 277 PRPDQVTFDVMLSGFCDAGFVDEARVLVDIMRCGGFLRRVE-------SYNRWLSGLVRN 329

Query: 118 GYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
           G V E   +  +M   +     +    ++  LC+ G+   A RV   +R   ++P +V+Y
Sbjct: 330 GRVGEAHELLREMAHERIHPNSYTYNIIVSGLCKEGKAFDARRVENFIRSGVMSPDVVTY 389

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
            S++H  C  G    A ++L+E  Q G  P+  TY VL++ L       +A ++L+ M  
Sbjct: 390 TSLLHAYCSKGNIAAANRILDEMAQKGCAPNSFTYNVLLQSLWRAGRTTEAERLLERMSE 449

Query: 238 KKDVDRTRICNIYLRALC----------------------LIKNPTELLNVLV-FMLQTQ 274
           K     T  CNI +  LC                      L +     L+V+    +  +
Sbjct: 450 KGYSLDTAGCNIIIDGLCRNSKLDVAMGIVDGMWEEGSTALGRLGNSFLSVVSDSSISQR 509

Query: 275 CQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEA 334
           C PD IT + +I+  CK GR +EA K L +M+  K  +PD+V + T I G    G+   A
Sbjct: 510 CLPDRITYSILISALCKEGRFDEAKKKLLEMIV-KDISPDSVIYDTFIHGYCKHGKTSLA 568

Query: 335 LNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVID 394
           + +L   M ++G +P   TYN ++RG     + +E  ++ + M   GV  +  TY  +I 
Sbjct: 569 IKVLRD-MEKKGCNPSTRTYNLLIRGFEEKHKSDEIMKLMSEMEEKGVSPNVLTYNSLIK 627

Query: 395 GLCESNQL 402
             C+   L
Sbjct: 628 SFCQQGML 635



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 121/480 (25%), Positives = 202/480 (42%), Gaps = 91/480 (18%)

Query: 107 FANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMR 166
           +  L+ +  RE  ++ V  + +D+    +  + F    ++ +LC +GR   A RV   M 
Sbjct: 113 YNRLILTALRESRLDLVEALYKDLLLAGAQPDVFTRNLLLRALCDAGRMELAQRVFEAMP 172

Query: 167 KR-----GL--------------------TPS--LVSYNSIVHGLCKHG----------- 188
            R     G+                     PS  LV  N++V G CK G           
Sbjct: 173 VRNEFSFGILARGYCRAGRSVDALKVLDGMPSMNLVVCNTVVAGFCKEGLVEEAERLVER 232

Query: 189 ---------------------------GCMRAYQLLEEGIQFGYL-PSEHTYKVLVEGLC 220
                                         R ++ ++E  Q G   P + T+ V++ G C
Sbjct: 233 MRVQGLAPNVVTFNSRISALCKAGRVLDAYRIFKDMQEDWQHGLPRPDQVTFDVMLSGFC 292

Query: 221 GESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVI 280
               +++AR ++  M     + R    N +L  L       E   +L  M   +  P+  
Sbjct: 293 DAGFVDEARVLVDIMRCGGFLRRVESYNRWLSGLVRNGRVGEAHELLREMAHERIHPNSY 352

Query: 281 TLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQ 340
           T N +++G CK G+  +A +V N + +G   +PD VT+T+++    + G I  A N +  
Sbjct: 353 TYNIIVSGLCKEGKAFDARRVENFIRSGVM-SPDVVTYTSLLHAYCSKGNIAAA-NRILD 410

Query: 341 VMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN 400
            M Q+G +P   TYN +L+ L+R  R  EA+ +   M   G   D+    I+IDGLC ++
Sbjct: 411 EMAQKGCAPNSFTYNVLLQSLWRAGRTTEAERLLERMSEKGYSLDTAGCNIIIDGLCRNS 470

Query: 401 QLDEA----KRFWDD--------------IVWPSNIH-----DNYVYAAMIKGLCRSGKI 437
           +LD A       W++              +V  S+I      D   Y+ +I  LC+ G+ 
Sbjct: 471 KLDVAMGIVDGMWEEGSTALGRLGNSFLSVVSDSSISQRCLPDRITYSILISALCKEGRF 530

Query: 438 HEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            EA   L E++   ++P+ V Y+  I G CK      A ++LR+M K G NP   T+ +L
Sbjct: 531 DEAKKKLLEMIVKDISPDSVIYDTFIHGYCKHGKTSLAIKVLRDMEKKGCNPSTRTYNLL 590



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 78/305 (25%), Positives = 140/305 (45%), Gaps = 16/305 (5%)

Query: 207 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 266
           P    Y  L+     ES L+    + + +L           N+ LRALC      EL   
Sbjct: 108 PPTPVYNRLILTALRESRLDLVEALYKDLLLAGAQPDVFTRNLLLRALCDAGR-MELAQR 166

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
           +   +  + +    +   +  G+C+ GR  +ALKVL+ M +        V   T++ G  
Sbjct: 167 VFEAMPVRNE---FSFGILARGYCRAGRSVDALKVLDGMPSMNL-----VVCNTVVAGFC 218

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCML-----GIG 381
             G ++EA  L+ ++  Q G +P +VT+N+ +  L +  RV +A  +F  M      G+ 
Sbjct: 219 KEGLVEEAERLVERMRVQ-GLAPNVVTFNSRISALCKAGRVLDAYRIFKDMQEDWQHGLP 277

Query: 382 VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAV 441
              D  T+ +++ G C++  +DEA+   D +     +     Y   + GL R+G++ EA 
Sbjct: 278 R-PDQVTFDVMLSGFCDAGFVDEARVLVDIMRCGGFLRRVESYNRWLSGLVRNGRVGEAH 336

Query: 442 HFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLH 501
             L E+    + PN   YN+++ G CK     +A ++   +R   ++PD VT+  L   +
Sbjct: 337 ELLREMAHERIHPNSYTYNIIVSGLCKEGKAFDARRVENFIRSGVMSPDVVTYTSLLHAY 396

Query: 502 GNRGN 506
            ++GN
Sbjct: 397 CSKGN 401



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/282 (23%), Positives = 118/282 (41%), Gaps = 63/282 (22%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   +  +A ++   ++S    P+VV+YT+L+H YC  G +  A ++ DEM   G  PN
Sbjct: 361 LCKEGKAFDARRVENFIRSGVMSPDVVTYTSLLHAYCSKGNIAAANRILDEMAQKGCAPN 420

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWER------------------------------ 93
           S TY+VL++ + R      A  L+ ++ E+                              
Sbjct: 421 SFTYNVLLQSLWRAGRTTEAERLLERMSEKGYSLDTAGCNIIIDGLCRNSKLDVAMGIVD 480

Query: 94  -MKEE----------------EDLSVNN------AAFANLVDSLCREGYVNEVFR----- 125
            M EE                 D S++         ++ L+ +LC+EG  +E  +     
Sbjct: 481 GMWEEGSTALGRLGNSFLSVVSDSSISQRCLPDRITYSILISALCKEGRFDEAKKKLLEM 540

Query: 126 IAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLC 185
           I +D+     + + F  G+     C+ G+   A +V+  M K+G  PS  +YN ++ G  
Sbjct: 541 IVKDISPDSVIYDTFIHGY-----CKHGKTSLAIKVLRDMEKKGCNPSTRTYNLLIRGFE 595

Query: 186 KHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEK 227
           +        +L+ E  + G  P+  TY  L++  C +  L +
Sbjct: 596 EKHKSDEIMKLMSEMEEKGVSPNVLTYNSLIKSFCQQGMLTR 637


>gi|302770855|ref|XP_002968846.1| hypothetical protein SELMODRAFT_90583 [Selaginella moellendorffii]
 gi|300163351|gb|EFJ29962.1| hypothetical protein SELMODRAFT_90583 [Selaginella moellendorffii]
          Length = 538

 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 122/441 (27%), Positives = 212/441 (48%), Gaps = 44/441 (9%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LCG     +A +L  ++ S  + P +  Y  +I G CR   +  AYKV ++M    +
Sbjct: 61  VDGLCGAGMANQALELVREL-SGVYTPTLFIYNGIITGLCRASRVMDAYKVLEKMVEESI 119

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +PN  TY++L+ G+ R+   + A     ++++ MK       N   +  L+  L R G +
Sbjct: 120 VPNVFTYTILLNGLCRSNKTKLAR----EVFQEMK-RNGCKPNPITYGTLIQHLSRAGEI 174

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E  R+  +    +   +   C  ++  LC++ R   A + +  MR+ G+ P+ V+Y+++
Sbjct: 175 DEALRVMIEQRSLELPTDVITCTTIVGGLCKASRLDDALKFMEEMRQMGVRPNEVTYSNL 234

Query: 181 VHGLCKHGGCMRAYQLL-EEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           VHG  +HG   R  +   EE  + G       Y   ++ LC    L++AR         K
Sbjct: 235 VHGFRQHGELDRVIRFFEEEKARKGGSLEAAAYPGYLDALCKAGYLDRAR---------K 285

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
            V+  R                          Q+   PDV+T + +IN F + G+ + +L
Sbjct: 286 SVEELR--------------------------QSGVVPDVVTYSMLINTFARAGQFDASL 319

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           ++L DM       PD VT++T+I  L    + Q+A  LL ++M   G  P +VTYN+V+ 
Sbjct: 320 ELLEDMRRNGV-KPDVVTYSTLINVLCKERKFQDAFRLL-ELMEAAGSPPNVVTYNSVMD 377

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
           GL +  +++E   V+  ML      D  TY+I+++GL ++  LD A + ++ I       
Sbjct: 378 GLCKSGKMDEVHRVYEMMLKSRCSPDVVTYSIIMNGLSKAGMLDSAVKLFELIKSSREGP 437

Query: 420 DNYVYAAMIKGLCRSGKIHEA 440
           D   Y+ +I  LCR+GK+ EA
Sbjct: 438 DAAAYSMVITSLCRAGKLEEA 458



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 114/410 (27%), Positives = 193/410 (47%), Gaps = 4/410 (0%)

Query: 89  KLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDS 148
           KL ER   E  + V++ AF  L   L R    +EV R+   +     V  E     ++D 
Sbjct: 4   KLLERSVVEAGVKVDSQAFTLLATKLFRRSKFSEVVRLFTLLASRGVVYGETTYKLVVDG 63

Query: 149 LCRSGRNHGASRVVYVMRKRGL-TPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLP 207
           LC +G  + A  +V  +   G+ TP+L  YN I+ GLC+    M AY++LE+ ++   +P
Sbjct: 64  LCGAGMANQALELVRELS--GVYTPTLFIYNGIITGLCRASRVMDAYKVLEKMVEESIVP 121

Query: 208 SEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVL 267
           +  TY +L+ GLC  +  + AR+V Q M               ++ L       E L V+
Sbjct: 122 NVFTYTILLNGLCRSNKTKLAREVFQEMKRNGCKPNPITYGTLIQHLSRAGEIDEALRVM 181

Query: 268 VFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLN 327
           +     +   DVIT  T++ G CK  R+++ALK + +M       P+ VT++ ++ G   
Sbjct: 182 IEQRSLELPTDVITCTTIVGGLCKASRLDDALKFMEEM-RQMGVRPNEVTYSNLVHGFRQ 240

Query: 328 VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADST 387
            G +   +    +   ++G S     Y   L  L +   ++ A++    +   GVV D  
Sbjct: 241 HGELDRVIRFFEEEKARKGGSLEAAAYPGYLDALCKAGYLDRARKSVEELRQSGVVPDVV 300

Query: 388 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYEL 447
           TY+++I+    + Q D +    +D+       D   Y+ +I  LC+  K  +A   L  +
Sbjct: 301 TYSMLINTFARAGQFDASLELLEDMRRNGVKPDVVTYSTLINVLCKERKFQDAFRLLELM 360

Query: 448 VDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
             +G  PN+V YN V+DG CK     E +++   M K+  +PD VT+ I+
Sbjct: 361 EAAGSPPNVVTYNSVMDGLCKSGKMDEVHRVYEMMLKSRCSPDVVTYSII 410



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 99/369 (26%), Positives = 178/369 (48%), Gaps = 36/369 (9%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC  SRV +A+K+   M     VPNV +YT L++G CR+ +  +A +VF EM+  G  PN
Sbjct: 98  LCRASRVMDAYKVLEKMVEESIVPNVFTYTILLNGLCRSNKTKLAREVFQEMKRNGCKPN 157

Query: 64  SLTYSVLVRGVLRTRDVERANVLM-------------------------------FKLWE 92
            +TY  L++ + R  +++ A  +M                                K  E
Sbjct: 158 PITYGTLIQHLSRAGEIDEALRVMIEQRSLELPTDVITCTTIVGGLCKASRLDDALKFME 217

Query: 93  RMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFAC--GHMIDSLC 150
            M+ +  +  N   ++NLV    + G ++ V R  E+    K  + E A   G++ D+LC
Sbjct: 218 EMR-QMGVRPNEVTYSNLVHGFRQHGELDRVIRFFEEEKARKGGSLEAAAYPGYL-DALC 275

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
           ++G    A + V  +R+ G+ P +V+Y+ +++   + G    + +LLE+  + G  P   
Sbjct: 276 KAGYLDRARKSVEELRQSGVVPDVVTYSMLINTFARAGQFDASLELLEDMRRNGVKPDVV 335

Query: 211 TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM 270
           TY  L+  LC E   + A ++L+ M +          N  +  LC      E+  V   M
Sbjct: 336 TYSTLINVLCKERKFQDAFRLLELMEAAGSPPNVVTYNSVMDGLCKSGKMDEVHRVYEMM 395

Query: 271 LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR 330
           L+++C PDV+T + ++NG  K G ++ A+K+  +++      PDA  ++ +I  L   G+
Sbjct: 396 LKSRCSPDVVTYSIIMNGLSKAGMLDSAVKLF-ELIKSSREGPDAAAYSMVITSLCRAGK 454

Query: 331 IQEALNLLY 339
           ++EA  + +
Sbjct: 455 LEEACGMYH 463



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 119/470 (25%), Positives = 206/470 (43%), Gaps = 46/470 (9%)

Query: 8   SRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV-LPNSLT 66
           S+  E  +LF  + SRG V    +Y  ++ G C  G  + A ++  E+   GV  P    
Sbjct: 33  SKFSEVVRLFTLLASRGVVYGETTYKLVVDGLCGAGMANQALELVREL--SGVYTPTLFI 90

Query: 67  YSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRI 126
           Y+ ++ G+ R   V  A    +K+ E+M EE  +  N   +  L++ LCR         +
Sbjct: 91  YNGIITGLCRASRVMDA----YKVLEKMVEE-SIVPNVFTYTILLNGLCRSNKTKLAREV 145

Query: 127 AEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK 186
            ++M +          G +I  L R+G    A RV+   R   L   +++  +IV GLCK
Sbjct: 146 FQEMKRNGCKPNPITYGTLIQHLSRAGEIDEALRVMIEQRSLELPTDVITCTTIVGGLCK 205

Query: 187 HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRI 246
                 A + +EE  Q G  P+E TY  LV G     +L++  +  +   ++K       
Sbjct: 206 ASRLDDALKFMEEMRQMGVRPNEVTYSNLVHGFRQHGELDRVIRFFEEEKARKGGS---- 261

Query: 247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV 306
                                   L+    P  +      +  CK G ++ A K + ++ 
Sbjct: 262 ------------------------LEAAAYPGYL------DALCKAGYLDRARKSVEELR 291

Query: 307 AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 366
                 PD VT++ +I      G+   +L LL + M + G  P +VTY+ ++  L + R+
Sbjct: 292 QSGV-VPDVVTYSMLINTFARAGQFDASLELL-EDMRRNGVKPDVVTYSTLINVLCKERK 349

Query: 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAA 426
            ++A  +   M   G   +  TY  V+DGLC+S ++DE  R ++ ++      D   Y+ 
Sbjct: 350 FQDAFRLLELMEAAGSPPNVVTYNSVMDGLCKSGKMDEVHRVYEMMLKSRCSPDVVTYSI 409

Query: 427 MIKGLCRSGKIHEAVHFLYELVDSGVT-PNIVCYNVVIDGACKLSMKREA 475
           ++ GL ++G +  AV  L+EL+ S    P+   Y++VI   C+     EA
Sbjct: 410 IMNGLSKAGMLDSAVK-LFELIKSSREGPDAAAYSMVITSLCRAGKLEEA 458



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 93/183 (50%), Gaps = 8/183 (4%)

Query: 334 ALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVI 393
           A  LL + + + G       +  +   LFR  +  E   +F  +   GVV   TTY +V+
Sbjct: 2   AAKLLERSVVEAGVKVDSQAFTLLATKLFRRSKFSEVVRLFTLLASRGVVYGETTYKLVV 61

Query: 394 DGLCES---NQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 450
           DGLC +   NQ  E  R    +  P+     ++Y  +I GLCR+ ++ +A   L ++V+ 
Sbjct: 62  DGLCGAGMANQALELVRELSGVYTPTL----FIYNGIITGLCRASRVMDAYKVLEKMVEE 117

Query: 451 GVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN-DFG 509
            + PN+  Y ++++G C+ +  + A ++ +EM++NG  P+ +T+  L +     G  D  
Sbjct: 118 SIVPNVFTYTILLNGLCRSNKTKLAREVFQEMKRNGCKPNPITYGTLIQHLSRAGEIDEA 177

Query: 510 LRI 512
           LR+
Sbjct: 178 LRV 180



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 93/169 (55%), Gaps = 10/169 (5%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   +  +A +L   M++ G  PNVV+Y +++ G C++G+MD  ++V++ M      P+
Sbjct: 344 LCKERKFQDAFRLLELMEAAGSPPNVVTYNSVMDGLCKSGKMDEVHRVYEMMLKSRCSPD 403

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE- 122
            +TYS+++ G+ +   ++ A V +F+L +  +E  D     AA++ ++ SLCR G + E 
Sbjct: 404 VVTYSIIMNGLSKAGMLDSA-VKLFELIKSSREGPD----AAAYSMVITSLCRAGKLEEA 458

Query: 123 --VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRG 169
             ++   E    G ++    A   ++ +LC + R   A R+V V  +RG
Sbjct: 459 CGMYHGMEVTVAGDNICRALA--GLVAALCDAERTDSARRIVEVASERG 505


>gi|449499490|ref|XP_004160831.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Cucumis sativus]
          Length = 1000

 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 124/522 (23%), Positives = 236/522 (45%), Gaps = 27/522 (5%)

Query: 6   GLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSL 65
            L +VG+  +    ++    VPN + Y  +I G C     + A    + MR    +PN  
Sbjct: 285 ALCKVGKWREALSLIEKEDFVPNTILYNKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQ 344

Query: 66  TYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFR 125
           TY +L+ G L  + + R   ++      M   E    +   F +LV + C+    +  ++
Sbjct: 345 TYRILLCGCLNKKQLGRCKRIL-----SMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYK 399

Query: 126 IAEDMPQGKSVNEEFACGHMIDSLCRSGRNHG------ASRVVYVMRKRGLTPSLVSYNS 179
           + + M + +          +I S+C  G   G      A +    M   G   + V+  S
Sbjct: 400 LLKKMEKCECKPGYVVYNILIGSICSGGELPGPVTFELAEKAYNEMLSAGTVLNKVNVVS 459

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
               LC  G   +AY+++ E +  G++P   TY  ++  LC  S +E A  + + M    
Sbjct: 460 FARCLCGFGKFEKAYKVIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTG 519

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
            V       I +          +  N L  M++  C+P V+T  T+I+ + K  ++  A 
Sbjct: 520 VVPDVYTYTILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVAN 579

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEA---------------LNLLYQVMPQ 344
           ++   M+A K C P+ +T+T +I G    G I++A               +++ +++   
Sbjct: 580 ELFELMIA-KGCFPNVITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNN 638

Query: 345 RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 404
               P +VTY A++ GL +  +V++A+++   M   G   ++  Y  +IDG C++ +LDE
Sbjct: 639 VAEKPNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDE 698

Query: 405 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
           A+  +  +V      + Y Y+++I  L +  ++   +  L +++++   PNIV Y  +ID
Sbjct: 699 AQEVFHKMVERGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMID 758

Query: 465 GACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           G  K++   EAY+++  M + G  P+ VT+  +    G  G 
Sbjct: 759 GLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGK 800



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 133/529 (25%), Positives = 226/529 (42%), Gaps = 54/529 (10%)

Query: 35  LIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWE-- 92
           LI   CR G  +VA +    ++  G  P  +TY+ LV+  LR   ++ A ++  ++ E  
Sbjct: 212 LIRKCCRNGLWNVALEELGRLKDFGYKPTRMTYNALVQVFLRADKLDTAQLVHREMSELG 271

Query: 93  -------------------------RMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIA 127
                                     + E+ED   N   +  ++  LC   +  E     
Sbjct: 272 LSMDEFTLGFFAQALCKVGKWREALSLIEKEDFVPNTILYNKMISGLCEASFFEEAMDFL 331

Query: 128 EDMPQGKSVNEEFACGHMIDSLCRSGRNHG-ASRVVYVMRKRGLTPSLVSYNSIVHGLCK 186
             M +  S         ++   C + +  G   R++ +M   G  PS   +NS+VH  CK
Sbjct: 332 NRM-RSTSCIPNVQTYRILLCGCLNKKQLGRCKRILSMMIAEGCYPSYTIFNSLVHAYCK 390

Query: 187 HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLC------GESDLEKARKVLQFMLSKKD 240
                 AY+LL++  +    P    Y +L+  +C      G    E A K    MLS   
Sbjct: 391 SDDFSYAYKLLKKMEKCECKPGYVVYNILIGSICSGGELPGPVTFELAEKAYNEMLSAGT 450

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           V        + R LC      +   V+  M+     PD  T + VI   C   R+E A  
Sbjct: 451 VLNKVNVVSFARCLCGFGKFEKAYKVIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFF 510

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +  +M  G    PD  T+T +I      G I++A N L + M + G  P +VTY  ++  
Sbjct: 511 LFKEM-KGTGVVPDVYTYTILIDCFSKAGIIKQAHNWLDE-MVRDGCEPTVVTYTTLIHA 568

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
             + ++V  A E+F  M+  G   +  TY  +IDG C+S  +++A + +  +   ++I D
Sbjct: 569 YLKAKKVSVANELFELMIAKGCFPNVITYTALIDGYCKSGNIEKACQIYARMRGDADIPD 628

Query: 421 ---------------NYV-YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
                          N V Y A++ GLC++ K+ +A   L  +   G  PN + Y+ +ID
Sbjct: 629 VDMYFKIKNNVAEKPNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALID 688

Query: 465 GACKLSMKREAYQILREMRKNGLNPDAVTW-RILDKLHGNRGNDFGLRI 512
           G CK +   EA ++  +M + G NP+  T+  ++D+L  ++  D  L++
Sbjct: 689 GFCKAAKLDEAQEVFHKMVERGYNPNVYTYSSLIDRLFKDKRLDLVLKV 737



 Score =  168 bits (425), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 127/498 (25%), Positives = 230/498 (46%), Gaps = 37/498 (7%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC  SRV  A  LF +MK  G VP+V +YT LI  + + G +  A+   DEM   G  P 
Sbjct: 499 LCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNWLDEMVRDGCEPT 558

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY+ L+   L+ + V  AN    +L+E M  +     N   +  L+D  C+ G + + 
Sbjct: 559 VVTYTTLIHAYLKAKKVSVAN----ELFELMIAKGCFP-NVITYTALIDGYCKSGNIEKA 613

Query: 124 FRI------AEDMPQ-------GKSVNEE---FACGHMIDSLCRSGRNHGASRVVYVMRK 167
            +I        D+P          +V E+      G ++D LC++ +   A  ++  M  
Sbjct: 614 CQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAHKVKDARDLLETMFV 673

Query: 168 RGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEK 227
            G  P+ + Y++++ G CK      A ++  + ++ GY P+ +TY  L++ L  +  L+ 
Sbjct: 674 DGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVERGYNPNVYTYSSLIDRLFKDKRLDL 733

Query: 228 ARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVIN 287
             KVL  ML         I    +  L  +    E   +++ M +  C+P+V+T   +I+
Sbjct: 734 VLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMID 793

Query: 288 GFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGY 347
           GF K G++++ L++  +M   K CAP+ VT+T +I      G + EA  LL + M Q  +
Sbjct: 794 GFGKAGKVDKCLELFREM-GSKGCAPNFVTYTVLINHCCATGHLDEAYALLEE-MKQTYW 851

Query: 348 SPGIVTYNAVLRG-----LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQL 402
              + +Y  V+ G     +  L  +EE ++        G       Y ++ID   ++ +L
Sbjct: 852 PKHVSSYCKVIEGYKREFILSLGLLEEVEKN-------GSAPTILLYKVLIDNFVKAGRL 904

Query: 403 DEAKRFWDDIVWP--SNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYN 460
           + A     +++    S      +Y ++I     + KI  A    Y+++  GV P++  + 
Sbjct: 905 EVALELHKEVISASMSMTAKKNLYTSLIYSFSYASKIDHAFELFYDMIRDGVIPDLGTFV 964

Query: 461 VVIDGACKLSMKREAYQI 478
            ++ G  ++    EA Q+
Sbjct: 965 HLLMGLIRVRRWEEALQL 982



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 94/375 (25%), Positives = 163/375 (43%), Gaps = 52/375 (13%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   +V +A  L   M   G  PN + Y  LI G+C+  ++D A +VF +M   G 
Sbjct: 652 VDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVERGY 711

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN  TYS L+  + + + ++    L+ K+  +M E       N+   N+V         
Sbjct: 712 NPNVYTYSSLIDRLFKDKRLD----LVLKVLSKMLE-------NSCAPNIV--------- 751

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                                   MID L +  +   A +++ +M ++G  P++V+Y ++
Sbjct: 752 --------------------IYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAM 791

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM----L 236
           + G  K G   +  +L  E    G  P+  TY VL+   C    L++A  +L+ M     
Sbjct: 792 IDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTVLINHCCATGHLDEAYALLEEMKQTYW 851

Query: 237 SKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIE 296
            K      ++   Y R   L       L +L  + +    P ++    +I+ F K GR+E
Sbjct: 852 PKHVSSYCKVIEGYKREFILS------LGLLEEVEKNGSAPTILLYKVLIDNFVKAGRLE 905

Query: 297 EALKVLNDMVAGKFC-APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN 355
            AL++  ++++           +T++I+      +I  A  L Y  M + G  P + T+ 
Sbjct: 906 VALELHKEVISASMSMTAKKNLYTSLIYSFSYASKIDHAFELFYD-MIRDGVIPDLGTFV 964

Query: 356 AVLRGLFRLRRVEEA 370
            +L GL R+RR EEA
Sbjct: 965 HLLMGLIRVRRWEEA 979


>gi|356532610|ref|XP_003534864.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Glycine max]
          Length = 642

 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 108/403 (26%), Positives = 199/403 (49%), Gaps = 4/403 (0%)

Query: 99  DLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGA 158
           ++  N   F  ++ ++CR G V++   +  ++P      + +    ++  LC+  R   A
Sbjct: 165 NIHPNALTFNLVIKAMCRLGLVDKAIEVFREIPLRNCAPDNYTYSTLMHGLCKEERIDEA 224

Query: 159 SRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEG 218
             ++  M+  G  P+LV++N ++  LCK G   RA +L++     G +P+E TY  LV G
Sbjct: 225 VSLLDEMQVEGTFPNLVAFNVLISALCKKGDLGRAAKLVDNMFLKGCVPNEVTYNALVHG 284

Query: 219 LCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPD 278
           LC +  LEKA  +L  M+S K V         +    +    ++   VLV +     + +
Sbjct: 285 LCLKGKLEKAVSLLNQMVSNKCVPNDVTFGTLINGFVMQGRASDGTRVLVSLEARGHRGN 344

Query: 279 VITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLL 338
               +++I+G CK G+  +A+++  +MV GK C P+ + ++ +I GL   G++ EA   L
Sbjct: 345 EYVYSSLISGLCKEGKFNQAMELWKEMV-GKGCGPNTIVYSALIDGLCREGKLDEARGFL 403

Query: 339 YQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE 398
            + M  +GY P   TY++++RG F      +A  V+  M     + +   Y+I+I+GLC+
Sbjct: 404 SE-MKNKGYLPNSFTYSSLMRGYFEAGDSHKAILVWKEMANNNCIHNEVCYSILINGLCK 462

Query: 399 SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG--VTPNI 456
             +  EA   W  ++      D   Y++MI G C +  + + +    +++  G  V P++
Sbjct: 463 DGKFMEALMVWKQMLSRGIKLDVVAYSSMIHGFCNANLVEQGLKLFNQMLCQGPVVQPDV 522

Query: 457 VCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
           + YN++++  C       A  IL  M   G +PD +T  I  K
Sbjct: 523 ITYNILLNAFCIQKSIFRAIDILNIMLDQGCDPDFITCDIFLK 565



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 117/473 (24%), Positives = 229/473 (48%), Gaps = 11/473 (2%)

Query: 30  VSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFK 89
           +S+ +LI  +  + +     +V  +M+    +     + V+ +   +    E+A  L  +
Sbjct: 62  LSFYSLIESHASSLDFRSLEEVLHQMKRERRVFLEKNFIVMFKAYGKAHLPEKAVDLFHR 121

Query: 90  LWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVN---EEFACGHMI 146
           +W   + ++ +     +F ++++ + +EG  N        +   KS+N          +I
Sbjct: 122 MWGEFQCKQTVK----SFNSVLNVIVQEGLFNRALEFYNHVVASKSLNIHPNALTFNLVI 177

Query: 147 DSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL 206
            ++CR G    A  V   +  R   P   +Y++++HGLCK      A  LL+E    G  
Sbjct: 178 KAMCRLGLVDKAIEVFREIPLRNCAPDNYTYSTLMHGLCKEERIDEAVSLLDEMQVEGTF 237

Query: 207 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 266
           P+   + VL+  LC + DL +A K++  M  K  V      N  +  LCL     + +++
Sbjct: 238 PNLVAFNVLISALCKKGDLGRAAKLVDNMFLKGCVPNEVTYNALVHGLCLKGKLEKAVSL 297

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
           L  M+  +C P+ +T  T+INGF   GR  +  +VL  + A      + V ++++I GL 
Sbjct: 298 LNQMVSNKCVPNDVTFGTLINGFVMQGRASDGTRVLVSLEARGHRGNEYV-YSSLISGLC 356

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
             G+  +A+ L ++ M  +G  P  + Y+A++ GL R  +++EA+   + M   G + +S
Sbjct: 357 KEGKFNQAMEL-WKEMVGKGCGPNTIVYSALIDGLCREGKLDEARGFLSEMKNKGYLPNS 415

Query: 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE 446
            TY+ ++ G  E+    +A   W ++   + IH+   Y+ +I GLC+ GK  EA+    +
Sbjct: 416 FTYSSLMRGYFEAGDSHKAILVWKEMANNNCIHNEVCYSILINGLCKDGKFMEALMVWKQ 475

Query: 447 LVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG--LNPDAVTWRIL 497
           ++  G+  ++V Y+ +I G C  ++  +  ++  +M   G  + PD +T+ IL
Sbjct: 476 MLSRGIKLDVVAYSSMIHGFCNANLVEQGLKLFNQMLCQGPVVQPDVITYNIL 528



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 111/412 (26%), Positives = 198/412 (48%), Gaps = 8/412 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           +C L  V +A ++F ++  R   P+  +Y+TL+HG C+   +D A  + DEM+  G  PN
Sbjct: 180 MCRLGLVDKAIEVFREIPLRNCAPDNYTYSTLMHGLCKEERIDEAVSLLDEMQVEGTFPN 239

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            + ++VL+  + +  D+ RA  L+  ++ +         N   +  LV  LC +G + + 
Sbjct: 240 LVAFNVLISALCKKGDLGRAAKLVDNMFLK-----GCVPNEVTYNALVHGLCLKGKLEKA 294

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             +   M   K V  +   G +I+     GR    +RV+  +  RG   +   Y+S++ G
Sbjct: 295 VSLLNQMVSNKCVPNDVTFGTLINGFVMQGRASDGTRVLVSLEARGHRGNEYVYSSLISG 354

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LCK G   +A +L +E +  G  P+   Y  L++GLC E  L++AR  L  M +K  +  
Sbjct: 355 LCKEGKFNQAMELWKEMVGKGCGPNTIVYSALIDGLCREGKLDEARGFLSEMKNKGYLPN 414

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
           +   +  +R      +  + + V   M    C  + +  + +ING CK G+  EAL V  
Sbjct: 415 SFTYSSLMRGYFEAGDSHKAILVWKEMANNNCIHNEVCYSILINGLCKDGKFMEALMVWK 474

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG-YSPGIVTYNAVLRGLF 362
            M++ +    D V ++++I G  N   +++ L L  Q++ Q     P ++TYN +L    
Sbjct: 475 QMLS-RGIKLDVVAYSSMIHGFCNANLVEQGLKLFNQMLCQGPVVQPDVITYNILLNAFC 533

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCES-NQLDEAKRFWDDIV 413
             + +  A ++ N ML  G   D  T  I +  L E+ N   + + F D++V
Sbjct: 534 IQKSIFRAIDILNIMLDQGCDPDFITCDIFLKTLRENMNPPQDGREFLDELV 585



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 106/427 (24%), Positives = 192/427 (44%), Gaps = 28/427 (6%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M  LC   R+ EA  L  +M+  G  PN+V++  LI   C+ G++  A K+ D M   G 
Sbjct: 212 MHGLCKEERIDEAVSLLDEMQVEGTFPNLVAFNVLISALCKKGDLGRAAKLVDNMFLKGC 271

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +PN +TY+ LV G+     +E+A  L+ ++            N+  F  L++    +G  
Sbjct: 272 VPNEVTYNALVHGLCLKGKLEKAVSLLNQM-----VSNKCVPNDVTFGTLINGFVMQGRA 326

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           ++  R+   +        E+    +I  LC+ G+ + A  +   M  +G  P+ + Y+++
Sbjct: 327 SDGTRVLVSLEARGHRGNEYVYSSLISGLCKEGKFNQAMELWKEMVGKGCGPNTIVYSAL 386

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GLC+ G    A   L E    GYLP+  TY  L+ G     D  KA  V + M +   
Sbjct: 387 IDGLCREGKLDEARGFLSEMKNKGYLPNSFTYSSLMRGYFEAGDSHKAILVWKEMANNNC 446

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           +      +I +  LC      E L V   ML    + DV+  +++I+GFC    +E+ LK
Sbjct: 447 IHNEVCYSILINGLCKDGKFMEALMVWKQMLSRGIKLDVVAYSSMIHGFCNANLVEQGLK 506

Query: 301 VLNDMV-AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           + N M+  G    PD +T+  ++        I  A+++L  +M  +G  P  +T +  L+
Sbjct: 507 LFNQMLCQGPVVQPDVITYNILLNAFCIQKSIFRAIDIL-NIMLDQGCDPDFITCDIFLK 565

Query: 360 G---------------------LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE 398
                                 L + +R   A ++   M+   ++  ++T+A+V+  +C+
Sbjct: 566 TLRENMNPPQDGREFLDELVVRLVKRQRTIGASKIIEVMMHKFLLPKASTWAMVVQQVCK 625

Query: 399 SNQLDEA 405
              + +A
Sbjct: 626 PKNVRKA 632


>gi|296083214|emb|CBI22850.3| unnamed protein product [Vitis vinifera]
          Length = 724

 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 131/508 (25%), Positives = 221/508 (43%), Gaps = 13/508 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D L   +R    + ++ +MK  G  PNV +Y  L+   C+   +D A+K+  EM   G 
Sbjct: 153 LDALLDENRFQMINPIYSNMKKDGMEPNVFTYNILLKALCKNNRVDGAHKLLVEMSSKGC 212

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ ++Y+ L+  + +   V+ A  L       M     + V NA    L++ +C+E   
Sbjct: 213 DPDEVSYTTLISSLCKLGKVKEAREL------AMSFTPSVPVYNA----LINGVCKEYTF 262

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E F++ ++M          +   +I++L  +G    +  V+  M  RG +P+L ++ S+
Sbjct: 263 EEAFQLLDEMMNKGIDPNVISYTTIINALSDAGNVELSLAVLAKMFARGCSPNLHTFTSL 322

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G    GG   A    +  I+ G +P+   Y  L+ GLC +  L  A  V   M     
Sbjct: 323 IKGFFLKGGSHEALDFWDRMIREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGC 382

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
               R  +  +       +      V  +M+   C P+V+    +++  C+     +A  
Sbjct: 383 CPNVRTYSALIDGYAKAGDLDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYC 442

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           ++ +M     C P+ VTF T I GL   GR+  A+ +  Q M   G  P   TYN +L  
Sbjct: 443 LIENMQVEN-CPPNTVTFNTFIKGLCGSGRVDWAIKVFDQ-MGNSGCFPNTTTYNELLDS 500

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L + RR  EA  +   M   G+  +  TY  +I G C +  L EA      +V      D
Sbjct: 501 LLKDRRFGEAFGLVKDMEHRGIELNLVTYNTIIYGYCCAGMLGEALELLGKMVVRGTKPD 560

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
                 +I   C+ GK++ A+  +  L      P+I+ Y  +I G C      EA   LR
Sbjct: 561 AITVNIVIDAYCKQGKVNIAIQLMDRLSAGKWHPDIIAYTSLISGICTHIGVEEAIVYLR 620

Query: 481 EMRKNGLNPDAVTWRILDK-LHGNRGND 507
            M   G++P+  TW +L + L  N G+ 
Sbjct: 621 RMLSEGISPNVATWNVLVRHLFSNMGHS 648



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 124/450 (27%), Positives = 210/450 (46%), Gaps = 17/450 (3%)

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           LTY +++  +   R+++    L+    ++MK E  +S +   F +++ S  R G   +  
Sbjct: 77  LTYQMMIEKLASEREMDCVQYLL----QQMKLE-GISCSEDLFISVIGSYRRAGSSEQAL 131

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
           +    M   +         H++D+L    R    + +   M+K G+ P++ +YN ++  L
Sbjct: 132 KTFYRMQDFRVKPTVKIYNHILDALLDENRFQMINPIYSNMKKDGMEPNVFTYNILLKAL 191

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
           CK+     A++LL E    G  P E +Y  L+  LC    +++AR+     L+       
Sbjct: 192 CKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLISSLCKLGKVKEARE-----LAMSFTPSV 246

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
            + N  +  +C      E   +L  M+     P+VI+  T+IN     G +E +L VL  
Sbjct: 247 PVYNALINGVCKEYTFEEAFQLLDEMMNKGIDPNVISYTTIINALSDAGNVELSLAVLAK 306

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
           M A + C+P+  TFT++I G    G   EAL+  +  M + G  P +V YNA++ GL   
Sbjct: 307 MFA-RGCSPNLHTFTSLIKGFFLKGGSHEALD-FWDRMIREGVVPNVVAYNALMHGLCSK 364

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV- 423
           R + +A  VFN M   G   +  TY+ +IDG  ++  LD A   W+ ++     H N V 
Sbjct: 365 RSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGDLDGASEVWNWMI-THGCHPNVVA 423

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y  M+  LCR+   ++A   +  +      PN V +N  I G C       A ++  +M 
Sbjct: 424 YTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCGSGRVDWAIKVFDQMG 483

Query: 484 KNGLNPDAVTW-RILDKLHGNR--GNDFGL 510
            +G  P+  T+  +LD L  +R  G  FGL
Sbjct: 484 NSGCFPNTTTYNELLDSLLKDRRFGEAFGL 513


>gi|225441858|ref|XP_002278530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Vitis vinifera]
          Length = 798

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 119/480 (24%), Positives = 229/480 (47%), Gaps = 20/480 (4%)

Query: 31  SYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKL 90
           +++ LI  Y ++G  + A + F +M+  G  P+  TY+ ++  +++    +   +L   +
Sbjct: 133 TFSVLIAAYAKSGMAEKAVESFGKMKDFGCKPDVFTYNSILHVMVQ----KEVFLLALAV 188

Query: 91  WERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC 150
           + +M +  + + N A F  L++ LC+ G  ++  ++ ++M Q            ++  LC
Sbjct: 189 YNQMLKL-NYNPNRATFVILLNGLCKNGKTDDALKMFDEMTQKGIPPNTMIYTIILSGLC 247

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
           ++ R     R++  M+  G  P  ++ N+++ G CK G    A+ LL+   + GY+    
Sbjct: 248 QAKRTDDVHRLLNTMKVSGCCPDSITCNALLDGFCKLGQIDEAFALLQLFEKEGYVLGIK 307

Query: 211 TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM 270
            Y  L++GL      ++ ++  + M          +  I +R  C +      LN+L  M
Sbjct: 308 GYSSLIDGLFRAKRYDEVQEWCRKMFKAGIEPDVVLYTILIRGFCEVGMVDYALNMLNDM 367

Query: 271 LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR 330
            Q    PD    N +I GFC +G +++A + L   ++   C P + T+T +I G+   G 
Sbjct: 368 TQRGLSPDTYCYNALIKGFCDVGLLDKA-RSLQLEISKNDCFPTSCTYTILICGMCRNGL 426

Query: 331 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCM------------- 377
           + EA  +  Q M   G SP I+T+NA++ GL +   +EEA+ +F  M             
Sbjct: 427 LDEARQIFNQ-MENLGCSPSIMTFNALIDGLCKAGELEEARHLFYKMEIGKNPSLFLRLS 485

Query: 378 LGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKI 437
            G   V D+ +   +++ LCES  + +A +    +     + D   Y  +I G C++  I
Sbjct: 486 QGADRVMDTASLQTMVERLCESGLILKAYKLLMQLADSGVVPDIMTYNVLINGFCKAKNI 545

Query: 438 HEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           + A     EL   G +P+ V Y  +IDG  ++  + +A+++L +M KNG  P +  ++ L
Sbjct: 546 NGAFKLFRELQLKGHSPDSVTYGTLIDGFHRVDREEDAFRVLDQMVKNGCTPSSAVYKCL 605



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 127/475 (26%), Positives = 212/475 (44%), Gaps = 84/475 (17%)

Query: 110 LVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRG 169
           ++D L ++   +  ++I E++              +I +  +SG    A      M+  G
Sbjct: 102 VIDMLAKDDGFDTYWKILEELKNSNIQIPPPTFSVLIAAYAKSGMAEKAVESFGKMKDFG 161

Query: 170 LTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKAR 229
             P + +YNSI+H + +    + A  +  + ++  Y P+  T+ +L+ GLC     + A 
Sbjct: 162 CKPDVFTYNSILHVMVQKEVFLLALAVYNQMLKLNYNPNRATFVILLNGLCKNGKTDDAL 221

Query: 230 KVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGF 289
           K+   M  K     T I  I L  LC  K   ++  +L  M  + C PD IT N +++GF
Sbjct: 222 KMFDEMTQKGIPPNTMIYTIILSGLCQAKRTDDVHRLLNTMKVSGCCPDSITCNALLDGF 281

Query: 290 CKMGRIEEALKVL---------------NDMVAGKFCA-------------------PDA 315
           CK+G+I+EA  +L               + ++ G F A                   PD 
Sbjct: 282 CKLGQIDEAFALLQLFEKEGYVLGIKGYSSLIDGLFRAKRYDEVQEWCRKMFKAGIEPDV 341

Query: 316 VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG--------------- 360
           V +T +I G   VG +  ALN+L   M QRG SP    YNA+++G               
Sbjct: 342 VLYTILIRGFCEVGMVDYALNMLND-MTQRGLSPDTYCYNALIKGFCDVGLLDKARSLQL 400

Query: 361 --------------------LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN 400
                               + R   ++EA+++FN M  +G      T+  +IDGLC++ 
Sbjct: 401 EISKNDCFPTSCTYTILICGMCRNGLLDEARQIFNQMENLGCSPSIMTFNALIDGLCKAG 460

Query: 401 QLDEAKRFWDDIVWPSN-------------IHDNYVYAAMIKGLCRSGKIHEAVHFLYEL 447
           +L+EA+  +  +    N             + D      M++ LC SG I +A   L +L
Sbjct: 461 ELEEARHLFYKMEIGKNPSLFLRLSQGADRVMDTASLQTMVERLCESGLILKAYKLLMQL 520

Query: 448 VDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW-RILDKLH 501
            DSGV P+I+ YNV+I+G CK      A+++ RE++  G +PD+VT+  ++D  H
Sbjct: 521 ADSGVVPDIMTYNVLINGFCKAKNINGAFKLFRELQLKGHSPDSVTYGTLIDGFH 575



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 127/447 (28%), Positives = 200/447 (44%), Gaps = 32/447 (7%)

Query: 13  AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVR 72
           A  ++  M    + PN  ++  L++G C+ G+ D A K+FDEM   G+ PN++ Y++++ 
Sbjct: 185 ALAVYNQMLKLNYNPNRATFVILLNGLCKNGKTDDALKMFDEMTQKGIPPNTMIYTIILS 244

Query: 73  GVL---RTRDVERANVLMFKLWERMKEE---EDLSVNNAAFANLVDSLCREGYVNEVFRI 126
           G+    RT DV R       L   MK      D    NA    L+D  C+ G ++E F +
Sbjct: 245 GLCQAKRTDDVHR-------LLNTMKVSGCCPDSITCNA----LLDGFCKLGQIDEAFAL 293

Query: 127 AEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK 186
            +   +   V        +ID L R+ R          M K G+ P +V Y  ++ G C+
Sbjct: 294 LQLFEKEGYVLGIKGYSSLIDGLFRAKRYDEVQEWCRKMFKAGIEPDVVLYTILIRGFCE 353

Query: 187 HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRI 246
            G    A  +L +  Q G  P  + Y  L++G C    L+KAR  LQ  +SK D   T  
Sbjct: 354 VGMVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLLDKARS-LQLEISKNDCFPTSC 412

Query: 247 C-NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM 305
              I +  +C      E   +   M    C P ++T N +I+G CK G +EEA  +   M
Sbjct: 413 TYTILICGMCRNGLLDEARQIFNQMENLGCSPSIMTFNALIDGLCKAGELEEARHLFYKM 472

Query: 306 VAGKFCA------------PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVT 353
             GK  +             D  +  T++  L   G I +A  LL Q +   G  P I+T
Sbjct: 473 EIGKNPSLFLRLSQGADRVMDTASLQTMVERLCESGLILKAYKLLMQ-LADSGVVPDIMT 531

Query: 354 YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413
           YN ++ G  + + +  A ++F  +   G   DS TY  +IDG    ++ ++A R  D +V
Sbjct: 532 YNVLINGFCKAKNINGAFKLFRELQLKGHSPDSVTYGTLIDGFHRVDREEDAFRVLDQMV 591

Query: 414 WPSNIHDNYVYAAMIKGLCRSGKIHEA 440
                  + VY  ++   CR GK+  A
Sbjct: 592 KNGCTPSSAVYKCLMTWSCRKGKLSVA 618



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 103/452 (22%), Positives = 180/452 (39%), Gaps = 89/452 (19%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D L    R  E  +    M   G  P+VV YT LI G+C  G +D A  + ++M   G+
Sbjct: 313 IDGLFRAKRYDEVQEWCRKMFKAGIEPDVVLYTILIRGFCEVGMVDYALNMLNDMTQRGL 372

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P++  Y+ L++G      +++A  L  ++      + D    +  +  L+  +CR G +
Sbjct: 373 SPDTYCYNALIKGFCDVGLLDKARSLQLEI-----SKNDCFPTSCTYTILICGMCRNGLL 427

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSL------ 174
           +E  +I   M              +ID LC++G    A  + Y M + G  PSL      
Sbjct: 428 DEARQIFNQMENLGCSPSIMTFNALIDGLCKAGELEEARHLFYKM-EIGKNPSLFLRLSQ 486

Query: 175 --------VSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLE 226
                    S  ++V  LC+ G  ++AY+LL +    G +P   TY VL+ G C   ++ 
Sbjct: 487 GADRVMDTASLQTMVERLCESGLILKAYKLLMQLADSGVVPDIMTYNVLINGFCKAKNIN 546

Query: 227 KARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVI 286
            A K+ + +  K                                      PD +T  T+I
Sbjct: 547 GAFKLFRELQLKGH-----------------------------------SPDSVTYGTLI 571

Query: 287 NGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVM---- 342
           +GF ++ R E+A +VL+ MV    C P +  +  ++      G++  A +L  + +    
Sbjct: 572 DGFHRVDREEDAFRVLDQMVKNG-CTPSSAVYKCLMTWSCRKGKLSVAFSLWLKYLRSLP 630

Query: 343 ---------PQRGYSPG--------------------IVTYNAVLRGLFRLRRVEEAKEV 373
                     +  +  G                    I  Y   L GL + RR EEA ++
Sbjct: 631 SQEDETLKLAEEHFEKGELEKAVRCLLEMNFKLNNFEIAPYTIWLIGLCQARRSEEALKI 690

Query: 374 FNCMLGIGVVADSTTYAIVIDGLCESNQLDEA 405
           F  +    +  +  +  ++I+GLC+   L+ A
Sbjct: 691 FLVLKECQMDVNPPSCVMLINGLCKDGNLEMA 722



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 93/415 (22%), Positives = 188/415 (45%), Gaps = 50/415 (12%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C +  + +A  L  ++      P   +YT LI G CR G +D A ++F++M + G  P+
Sbjct: 386 FCDVGLLDKARSLQLEISKNDCFPTSCTYTILICGMCRNGLLDEARQIFNQMENLGCSPS 445

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFK--------LWERMKEEEDLSVNNAAFANLVDSLC 115
            +T++ L+ G+ +  ++E A  L +K        L+ R+ +  D  ++ A+   +V+ LC
Sbjct: 446 IMTFNALIDGLCKAGELEEARHLFYKMEIGKNPSLFLRLSQGADRVMDTASLQTMVERLC 505

Query: 116 REGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLV 175
             G + + +++   +     V +      +I+  C++   +GA ++   ++ +G +P  V
Sbjct: 506 ESGLILKAYKLLMQLADSGVVPDIMTYNVLINGFCKAKNINGAFKLFRELQLKGHSPDSV 565

Query: 176 SYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKA----RKV 231
           +Y +++ G  +      A+++L++ ++ G  PS   YK L+   C +  L  A     K 
Sbjct: 566 TYGTLIDGFHRVDREEDAFRVLDQMVKNGCTPSSAVYKCLMTWSCRKGKLSVAFSLWLKY 625

Query: 232 LQFMLSKKD--------------VDRTRIC----------------NIYLRALCLIKNPT 261
           L+ + S++D              +++   C                 I+L  LC  +   
Sbjct: 626 LRSLPSQEDETLKLAEEHFEKGELEKAVRCLLEMNFKLNNFEIAPYTIWLIGLCQARRSE 685

Query: 262 ELLNVLVFMLQTQCQPDVITLNTV--INGFCKMGRIEEALKV-LNDMVAGKFCAPDAVTF 318
           E L   +F++  +CQ DV   + V  ING CK G +E A+ + L  +  G    P     
Sbjct: 686 EALK--IFLVLKECQMDVNPPSCVMLINGLCKDGNLEMAVDIFLYTLEKGFMLMPRIC-- 741

Query: 319 TTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEV 373
             ++  L+   +++ AL+LL + M   GY      ++ +   L  + + +E + V
Sbjct: 742 NQLLRSLILQDKMKHALDLLNR-MNSAGYDLDEYLHHRIKSYLLSVWKAQEMENV 795



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 132/275 (48%), Gaps = 23/275 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +++LC    + +A+KL   +   G VP++++Y  LI+G+C+   ++ A+K+F E++  G 
Sbjct: 501 VERLCESGLILKAYKLLMQLADSGVVPDIMTYNVLINGFCKAKNINGAFKLFRELQLKGH 560

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+S+TY  L+ G  R    E A    F++ ++M  +   + ++A +  L+   CR+G +
Sbjct: 561 SPDSVTYGTLIDGFHRVDREEDA----FRVLDQMV-KNGCTPSSAVYKCLMTWSCRKGKL 615

Query: 121 NEVFRI----AEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVS 176
           +  F +       +P  +    + A  H        G    A R +  M  +     +  
Sbjct: 616 SVAFSLWLKYLRSLPSQEDETLKLAEEHF-----EKGELEKAVRCLLEMNFKLNNFEIAP 670

Query: 177 YNSIVHGLC---KHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQ 233
           Y   + GLC   +    ++ + +L+E  Q    P      +L+ GLC + +LE A  +  
Sbjct: 671 YTIWLIGLCQARRSEEALKIFLVLKE-CQMDVNPPSCV--MLINGLCKDGNLEMAVDIFL 727

Query: 234 FMLSKKDVDRTRICNIYLRALCL---IKNPTELLN 265
           + L K  +   RICN  LR+L L   +K+  +LLN
Sbjct: 728 YTLEKGFMLMPRICNQLLRSLILQDKMKHALDLLN 762


>gi|449485308|ref|XP_004157129.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g31850, chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 134/548 (24%), Positives = 241/548 (43%), Gaps = 57/548 (10%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGH----------------------------------- 25
           +D LC   ++  A +LF  MK+ GH                                   
Sbjct: 304 IDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGY 363

Query: 26  VPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANV 85
           +P+VV++T L+   C+  + D A+  FD MR  G+LPN  TY+ L+ G+LR   +E A  
Sbjct: 364 MPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDA-- 421

Query: 86  LMFKLWERMKEEEDLSVNNAAFA--NLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACG 143
              KL + M   E + V   A+     +D   + G   +     E M     V    AC 
Sbjct: 422 --LKLLDTM---ESVGVQPTAYTYITFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACN 476

Query: 144 HMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQF 203
             + SL   GR   A  +   +R+ GL P  V+YN ++    K G    A  LL E I+ 
Sbjct: 477 ASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRN 536

Query: 204 GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTEL 263
           G  P       L++ L     +++A ++   M   K        N  L  L       + 
Sbjct: 537 GCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKA 596

Query: 264 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF 323
           + +   M+  +C P+ I+ NT+++ FCK   +E ALK+ + M     C PD +T+ T+I+
Sbjct: 597 IELFESMIXKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMD-CKPDVLTYNTVIY 655

Query: 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVF-NCMLGIGV 382
           GL+   ++  A    +Q+  ++   P  VT   +L GL +  ++ +A  +  + M  +  
Sbjct: 656 GLIKENKVNHAFWFFHQL--KKSMHPDHVTICTLLPGLVKCGQIGDAISIARDFMYQVRF 713

Query: 383 VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVH 442
             + + +  ++ G     ++D+A  F +++V      ++     +++ LC+    H+   
Sbjct: 714 RVNRSFWEDLMGGTLVEAEMDKAIIFAEELVLNGICREDSFLIPLVRVLCK----HKREL 769

Query: 443 FLYELVDS-----GVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           + Y++ D      G++P +  YN +I    ++    +A+ + ++M+  G  PDA T+ +L
Sbjct: 770 YAYQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNML 829

Query: 498 DKLHGNRG 505
             +HG  G
Sbjct: 830 LAVHGKSG 837



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 127/496 (25%), Positives = 233/496 (46%), Gaps = 20/496 (4%)

Query: 9    RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
            RV +A +LF  M  +   PN +S+ TL+  +C+  E+++A K+F +M      P+ LTY+
Sbjct: 592  RVQKAIELFESMIXKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYN 651

Query: 69   VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
             ++ G+++   V  A       W   + ++ +  ++     L+  L + G + +   IA 
Sbjct: 652  TVIYGLIKENKVNHA------FWFFHQLKKSMHPDHVTICTLLPGLVKCGQIGDAISIAR 705

Query: 129  D-MPQ-----GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
            D M Q      +S  E+   G ++++            V+      G+         +V 
Sbjct: 706  DFMYQVRFRVNRSFWEDLMGGTLVEAEMDKAIIFAEELVL-----NGICREDSFLIPLVR 760

Query: 183  GLCKHGGCMRAYQLLEEGIQ-FGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
             LCKH   + AYQ+ ++  +  G  P+  +Y  L+  L      EKA  + + M +    
Sbjct: 761  VLCKHKRELYAYQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCA 820

Query: 242  DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
                  N+ L         TEL  +   M+  +C+PD IT N VI+   K   +++AL  
Sbjct: 821  PDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDF 880

Query: 302  LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
              D+V+  F  P   T+  +I GL  VGR++EA+ L ++ M   G  P    +N ++ G 
Sbjct: 881  FYDLVSSDF-RPTPRTYGPLIDGLAKVGRLEEAMRL-FEEMSDYGCKPNCAIFNILINGY 938

Query: 362  FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
             ++   E A ++F  M+  G+  D  +Y I++D LC + ++DEA  +++++       D 
Sbjct: 939  GKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDF 998

Query: 422  YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
              Y  +I GL +S ++ EA+    E+ + G+ P++  YN ++       M  +A ++  E
Sbjct: 999  IAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEE 1058

Query: 482  MRKNGLNPDAVTWRIL 497
            ++  GL PD  T+  L
Sbjct: 1059 LQLAGLEPDVFTYNAL 1074



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 117/466 (25%), Positives = 221/466 (47%), Gaps = 8/466 (1%)

Query: 16  LFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVL 75
           L  +M+  G  PNV ++T  I    R G++D AY++F  M   G  P+ +TY+VL+  + 
Sbjct: 249 LLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALC 308

Query: 76  RTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKS 135
               +E A  L  K+     + + +      +  L+D     G ++        M     
Sbjct: 309 NAGQLENAKELFVKMKANGHKPDQV-----IYITLLDKFNDFGDLDTFKEFWSQMEADGY 363

Query: 136 VNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQ 195
           + +      ++D LC++     A     VMRK+G+ P+L +YN+++ GL + G    A +
Sbjct: 364 MPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALK 423

Query: 196 LLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALC 255
           LL+     G  P+ +TY   ++      +  KA +  + M +K  V     CN  L +L 
Sbjct: 424 LLDTMESVGVQPTAYTYITFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLA 483

Query: 256 LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA 315
            +    E   +   + +    PD +T N ++  + K+G+++EA+ +L++M+    C PD 
Sbjct: 484 EMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNG-CEPDV 542

Query: 316 VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN 375
           +   ++I  L   GR+ EA   ++  M     SP +VTYN +L GL +  RV++A E+F 
Sbjct: 543 IVVNSLIDSLYKAGRVDEAWQ-MFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFE 601

Query: 376 CMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG 435
            M+      ++ ++  ++D  C++++++ A + +  +       D   Y  +I GL +  
Sbjct: 602 SMIXKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKEN 661

Query: 436 KIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
           K++ A  F ++L  S + P+ V    ++ G  K     +A  I R+
Sbjct: 662 KVNHAFWFFHQLKKS-MHPDHVTICTLLPGLVKCGQIGDAISIARD 706



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 124/480 (25%), Positives = 208/480 (43%), Gaps = 46/480 (9%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M+  G V N  SY  LIH   ++G    A +V+  M   G+ P+  TYS L+  + + RD
Sbjct: 183 MRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRD 242

Query: 80  VERANVLMFKLWERMKEEEDLSV--NNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVN 137
            E   VL       +KE EDL +  N   F   +  L R G ++E + I   M       
Sbjct: 243 SEMVMVL-------LKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGP 295

Query: 138 EEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLL 197
           +      +ID+LC +G+   A  +   M+  G  P  V Y +++      G      +  
Sbjct: 296 DLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFW 355

Query: 198 EEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLI 257
            +    GY+P   T+ +LV+ LC   D ++A      M  +  +                
Sbjct: 356 SQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGIL---------------- 399

Query: 258 KNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVT 317
                              P++ T NT+I G  + GRIE+ALK+L+ M +     P A T
Sbjct: 400 -------------------PNLHTYNTLICGLLRAGRIEDALKLLDTMESVG-VQPTAYT 439

Query: 318 FTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCM 377
           + T I      G   +A+   ++ M  +G  P IV  NA L  L  + R+ EAK +FN +
Sbjct: 440 YITFIDYFGKSGETGKAVE-TFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGL 498

Query: 378 LGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKI 437
              G+  DS TY +++    +  Q+DEA     +++      D  V  ++I  L ++G++
Sbjct: 499 RENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRV 558

Query: 438 HEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            EA      + D  ++P +V YN ++ G  K    ++A ++   M     +P+ +++  L
Sbjct: 559 DEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIXKKCSPNTISFNTL 618



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 138/612 (22%), Positives = 237/612 (38%), Gaps = 113/612 (18%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D+      +    + +  M++ G++P+VV++T L+   C+  + D A+  FD MR  G+
Sbjct: 339 LDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGI 398

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFA--NLVDSLCREG 118
           LPN  TY+ L+ G+LR   +E A     KL + M   E + V   A+     +D   + G
Sbjct: 399 LPNLHTYNTLICGLLRAGRIEDA----LKLLDTM---ESVGVQPTAYTYITFIDYFGKSG 451

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
              +     E M     V    AC   + SL   GR   A  +   +R+ GL P  V+YN
Sbjct: 452 ETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYN 511

Query: 179 -----------------------------------SIVHGLCKHGGCMRAYQLLEEGIQF 203
                                              S++  L K G    A+Q+ +     
Sbjct: 512 MMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDM 571

Query: 204 GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTEL 263
              P+  TY  L+ GL  E  ++KA ++ + M+ KK    T   N  L   C        
Sbjct: 572 KLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIXKKCSPNTISFNTLLDCFCKNDEVELA 631

Query: 264 LNVLVFMLQTQCQPDVITLN----------------------------------TVINGF 289
           L +   M    C+PDV+T N                                  T++ G 
Sbjct: 632 LKMFSKMTVMDCKPDVLTYNTVIYGLIKENKVNHAFWFFHQLKKSMHPDHVTICTLLPGL 691

Query: 290 CKMGRIEEALKV----------------LNDMVAGKFCAPD---AVTFT----------- 319
            K G+I +A+ +                  D++ G     +   A+ F            
Sbjct: 692 VKCGQIGDAISIARDFMYQVRFRVNRSFWEDLMGGTLVEAEMDKAIIFAEELVLNGICRE 751

Query: 320 -TIIFGLLNV----GRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVF 374
            + +  L+ V     R   A  +  +   + G SP + +YN ++  L  +   E+A ++F
Sbjct: 752 DSFLIPLVRVLCKHKRELYAYQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLF 811

Query: 375 NCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRS 434
             M  +G   D+ T+ +++    +S ++ E    + +++      D   Y  +I  L +S
Sbjct: 812 KDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKS 871

Query: 435 GKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
             + +A+ F Y+LV S   P    Y  +IDG  K+    EA ++  EM   G  P+   +
Sbjct: 872 NNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIF 931

Query: 495 RILDKLHGNRGN 506
            IL   +G  G+
Sbjct: 932 NILINGYGKIGD 943



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 93/351 (26%), Positives = 160/351 (45%), Gaps = 8/351 (2%)

Query: 159 SRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEG 218
           + V+  MRK G   +  SYN ++H L + G C  A ++    +  G  PS  TY  L+  
Sbjct: 177 TTVLNKMRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVA 236

Query: 219 LCGESDLEKARKVLQFMLS---KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQC 275
           L  + D E    +L+ M     + +V    IC   +R L       E   +   M    C
Sbjct: 237 LGKKRDSEMVMVLLKEMEDLGLRPNVYTFTIC---IRVLGRAGKIDEAYEIFRRMDDEGC 293

Query: 276 QPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEAL 335
            PD++T   +I+  C  G++E A ++   M A     PD V + T++    + G + +  
Sbjct: 294 GPDLVTYTVLIDALCNAGQLENAKELFVKMKANGH-KPDQVIYITLLDKFNDFGDL-DTF 351

Query: 336 NLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG 395
              +  M   GY P +VT+  ++  L + R  +EA   F+ M   G++ +  TY  +I G
Sbjct: 352 KEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICG 411

Query: 396 LCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN 455
           L  + ++++A +  D +         Y Y   I    +SG+  +AV    ++   G+ PN
Sbjct: 412 LLRAGRIEDALKLLDTMESVGVQPTAYTYITFIDYFGKSGETGKAVETFEKMKAKGIVPN 471

Query: 456 IVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           IV  N  +    ++   REA  +   +R+NGL PD+VT+ ++ K +   G 
Sbjct: 472 IVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQ 522



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 111/469 (23%), Positives = 196/469 (41%), Gaps = 47/469 (10%)

Query: 75  LRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGK 134
           LR  D       +F+  ++     DL      +  +  +L   G + ++  +   M +  
Sbjct: 132 LRVHDKVEDMAAVFEFMQKKIIRRDLD----TYLTIFKALSIRGGLRQMTTVLNKMRKAG 187

Query: 135 SVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAY 194
            V   ++   +I  L +SG    A  V   M   GL PSL +Y++++  L K        
Sbjct: 188 FVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVM 247

Query: 195 QLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRAL 254
            LL+E    G  P+ +T+ + +  L     +++A ++ + M  +          + + AL
Sbjct: 248 VLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDAL 307

Query: 255 C---LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC 311
           C    ++N  EL    V M     +PD +   T+++ F   G ++   +  + M A  + 
Sbjct: 308 CNAGQLENAKEL---FVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGY- 363

Query: 312 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK 371
            PD VTFT ++  L       EA    + VM ++G  P + TYN ++ GL R  R+E+A 
Sbjct: 364 MPDVVTFTILVDVLCKARDFDEAFA-TFDVMRKQGILPNLHTYNTLICGLLRAGRIEDAL 422

Query: 372 EVFNCMLGIGVVADSTTYAIVID-----------------------------------GL 396
           ++ + M  +GV   + TY   ID                                    L
Sbjct: 423 KLLDTMESVGVQPTAYTYITFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSL 482

Query: 397 CESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNI 456
            E  +L EAK  ++ +       D+  Y  M+K   + G++ EAV+ L E++ +G  P++
Sbjct: 483 AEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDV 542

Query: 457 VCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
           +  N +ID   K     EA+Q+   M+   L+P  VT+  L    G  G
Sbjct: 543 IVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEG 591



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 91/359 (25%), Positives = 160/359 (44%), Gaps = 12/359 (3%)

Query: 35   LIHGYCRTGEMDVAYKVFDEM-RHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWER 93
            L+   C+      AY++FD+  +  G+ P   +Y+ L+  +L     E+A       W+ 
Sbjct: 758  LVRVLCKHKRELYAYQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKA-------WDL 810

Query: 94   MKEEEDLSVNNAAFA--NLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCR 151
             K+ +++     AF    L+    + G + E+F + ++M   +   +      +I SL +
Sbjct: 811  FKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAK 870

Query: 152  SGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHT 211
            S     A    Y +      P+  +Y  ++ GL K G    A +L EE   +G  P+   
Sbjct: 871  SNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAI 930

Query: 212  YKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFML 271
            + +L+ G     D E A ++ + M+++      +   I +  LCL     E L     + 
Sbjct: 931  FNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELK 990

Query: 272  QTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRI 331
             T   PD I  N +ING  K  R+EEAL + N+M   +   PD  T+ +++  L   G +
Sbjct: 991  STGLDPDFIAYNRIINGLGKSQRMEEALALYNEM-RNRGIVPDLYTYNSLMLNLGLAGMV 1049

Query: 332  QEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYA 390
            ++A   +Y+ +   G  P + TYNA++RG       E A  V+  M+  G   +  TYA
Sbjct: 1050 EQA-KRMYEELQLAGLEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPNIGTYA 1107



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 86/338 (25%), Positives = 149/338 (44%), Gaps = 9/338 (2%)

Query: 164 VMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQF-GYLPSEHTYKVLVEGLCGE 222
           VM  +G T   VS + ++  L      +RA        +F   L +  T   ++E L   
Sbjct: 76  VMVVKGKTEIRVSEDEVLGVLKSMTDPIRALSYFYSISEFPTVLHTTETCNFMLEFLRVH 135

Query: 223 SDLEKARKVLQFMLSKKDVDRTRICNIYL---RALCLIKNPTELLNVLVFMLQTQCQPDV 279
             +E    V +FM  +K + R R  + YL   +AL +     ++  VL  M +     + 
Sbjct: 136 DKVEDMAAVFEFM--QKKIIR-RDLDTYLTIFKALSIRGGLRQMTTVLNKMRKAGFVLNA 192

Query: 280 ITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLY 339
            + N +I+   + G   EAL+V   MV+     P   T++ ++  L    R  E + +L 
Sbjct: 193 YSYNGLIHLLIQSGFCGEALEVYRRMVSEGL-KPSLKTYSALMVAL-GKKRDSEMVMVLL 250

Query: 340 QVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCES 399
           + M   G  P + T+   +R L R  +++EA E+F  M   G   D  TY ++ID LC +
Sbjct: 251 KEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNA 310

Query: 400 NQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCY 459
            QL+ AK  +  +    +  D  +Y  ++      G +     F  ++   G  P++V +
Sbjct: 311 GQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTF 370

Query: 460 NVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            +++D  CK     EA+     MRK G+ P+  T+  L
Sbjct: 371 TILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTL 408



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 109/236 (46%), Gaps = 5/236 (2%)

Query: 1    MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
            +  L   + + +A   F+D+ S    P   +Y  LI G  + G ++ A ++F+EM   G 
Sbjct: 865  ISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGC 924

Query: 61   LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             PN   +++L+ G  +  D E A     +L++RM   E +  +  ++  LVD LC  G V
Sbjct: 925  KPNCAIFNILINGYGKIGDTETA----CQLFKRMV-NEGIRPDLKSYTILVDCLCLAGRV 979

Query: 121  NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +E      ++       +  A   +I+ L +S R   A  +   MR RG+ P L +YNS+
Sbjct: 980  DEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSL 1039

Query: 181  VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFML 236
            +  L   G   +A ++ EE    G  P   TY  L+ G     + E A  V + M+
Sbjct: 1040 MLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNALIRGYSLSENPEHAYTVYKNMM 1095


>gi|357127090|ref|XP_003565218.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Brachypodium distachyon]
          Length = 886

 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 132/517 (25%), Positives = 235/517 (45%), Gaps = 15/517 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ +C      EA +L  +M  +G  PN V+Y  LIH  C+ G MD A  + D MR  GV
Sbjct: 344 LNNMCKNGMFSEADRLVNEMSDKGLEPNEVTYAILIHSLCKRGMMDDALCMLDRMREKGV 403

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
                 Y+ L+    +  D++ A   + ++      E  L+ N A+++ ++  LCR+G +
Sbjct: 404 RMTVYPYNSLINCCCKKDDLDMAMGFLSEM-----VEIGLTPNAASYSPVIAGLCRKGDL 458

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +    +   M +       +    +I+  C++ +   ASR+   M +  L P+ V++N++
Sbjct: 459 SGAVELHRKMAEKGVAWNTYTFTALINGFCKAKKMDEASRLFNKMTESNLEPNEVTFNAV 518

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G C  G   +A+QL ++ +  G  P  +TY+ L+ GLC      KA++ +  + +   
Sbjct: 519 IEGYCLVGDIRKAFQLYDQMMCRGLTPDNYTYRSLISGLCLTDGASKAKEFVADLENNCS 578

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           V         L   C     TE  +V   M     + D+I+   ++    K    E++  
Sbjct: 579 VLNKFSLTALLHGFCREGRLTEAYHVWNEMAMWGGKLDLISFTIIVYAALKQHDSEKSCV 638

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +  +M   K   PD V  T +I      G + +ALN  +  M   G+ P  VTY A++  
Sbjct: 639 LFREM-KEKGVRPDNVFHTCMINMYSKEGNMVQALNC-WDEMIADGHLPNTVTYTALVNN 696

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV--WPSNI 418
           L +   +  A+ +   ML    + +S T+   +D       L+ AK  +  ++  + +NI
Sbjct: 697 LCKSWHLSSAELLCKEMLASHFLPNSYTFNCFLDYFATEGNLETAKDLYFAMLQGFLANI 756

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI 478
                   +IKG C+ G+I EA+  +    ++G  P+ + Y+ VI   CK     EA ++
Sbjct: 757 ---VSVNTLIKGFCKVGQIQEAIDLISRSTENGFFPDCISYSTVIHELCKKGDINEAIEL 813

Query: 479 LREMRKNGLNPDAVTWRILDK---LHGNRGNDFGLRI 512
             EM   G+ PD V + IL +   +HG      G+ I
Sbjct: 814 WNEMLYKGVKPDIVAYNILIRWCNIHGESDKCLGIYI 850



 Score =  164 bits (416), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 126/504 (25%), Positives = 230/504 (45%), Gaps = 9/504 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   RV EA  +   M +RG   + V+  TL++G+CRT E+D+A ++  +M   G +P+
Sbjct: 242 LCKNQRVREAVDVKNSMLARGVAADEVTCRTLVYGFCRTEELDMALEMTGDMARLGFVPS 301

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWE-RMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
               S ++ G+ +   VE A  L  +L E RM        N  A+  L++++C+ G  +E
Sbjct: 302 EANCSFMLDGLRKKGRVEEAFRLACQLGELRMVP------NIFAYNALLNNMCKNGMFSE 355

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
             R+  +M        E     +I SLC+ G    A  ++  MR++G+  ++  YNS+++
Sbjct: 356 ADRLVNEMSDKGLEPNEVTYAILIHSLCKRGMMDDALCMLDRMREKGVRMTVYPYNSLIN 415

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
             CK      A   L E ++ G  P+  +Y  ++ GLC + DL  A ++ + M  K    
Sbjct: 416 CCCKKDDLDMAMGFLSEMVEIGLTPNAASYSPVIAGLCRKGDLSGAVELHRKMAEKGVAW 475

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
            T      +   C  K   E   +   M ++  +P+ +T N VI G+C +G I +A ++ 
Sbjct: 476 NTYTFTALINGFCKAKKMDEASRLFNKMTESNLEPNEVTFNAVIEGYCLVGDIRKAFQLY 535

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
           + M+  +   PD  T+ ++I GL       +A   +   +          +  A+L G  
Sbjct: 536 DQMMC-RGLTPDNYTYRSLISGLCLTDGASKAKEFVAD-LENNCSVLNKFSLTALLHGFC 593

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
           R  R+ EA  V+N M   G   D  ++ I++    + +  +++   + ++       DN 
Sbjct: 594 REGRLTEAYHVWNEMAMWGGKLDLISFTIIVYAALKQHDSEKSCVLFREMKEKGVRPDNV 653

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
            +  MI    + G + +A++   E++  G  PN V Y  +++  CK      A  + +EM
Sbjct: 654 FHTCMINMYSKEGNMVQALNCWDEMIADGHLPNTVTYTALVNNLCKSWHLSSAELLCKEM 713

Query: 483 RKNGLNPDAVTWRILDKLHGNRGN 506
             +   P++ T+          GN
Sbjct: 714 LASHFLPNSYTFNCFLDYFATEGN 737



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 122/520 (23%), Positives = 232/520 (44%), Gaps = 42/520 (8%)

Query: 22  SRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVE 81
           S G  P+  + + ++    +  +  +A  +FD M H GVL +   Y+  +R     R+++
Sbjct: 155 SAGIAPDQHTASQILFSLVKIRQFALARHLFDGMLHSGVLLDEYVYTAGIRAYCEVRNLD 214

Query: 82  RANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFA 141
            A  L+     RM++E D  V+   +  L+  LC+   V E   +   M       +E  
Sbjct: 215 GAKGLV----ARMQDEGD-KVSAVPYNVLIYGLCKNQRVREAVDVKNSMLARGVAADEVT 269

Query: 142 CGHMIDSLCRS-----------------------------------GRNHGASRVVYVMR 166
           C  ++   CR+                                   GR   A R+   + 
Sbjct: 270 CRTLVYGFCRTEELDMALEMTGDMARLGFVPSEANCSFMLDGLRKKGRVEEAFRLACQLG 329

Query: 167 KRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLE 226
           +  + P++ +YN++++ +CK+G    A +L+ E    G  P+E TY +L+  LC    ++
Sbjct: 330 ELRMVPNIFAYNALLNNMCKNGMFSEADRLVNEMSDKGLEPNEVTYAILIHSLCKRGMMD 389

Query: 227 KARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVI 286
            A  +L  M  K         N  +   C   +    +  L  M++    P+  + + VI
Sbjct: 390 DALCMLDRMREKGVRMTVYPYNSLINCCCKKDDLDMAMGFLSEMVEIGLTPNAASYSPVI 449

Query: 287 NGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
            G C+ G +  A+++   M A K  A +  TFT +I G     ++ EA + L+  M +  
Sbjct: 450 AGLCRKGDLSGAVELHRKM-AEKGVAWNTYTFTALINGFCKAKKMDEA-SRLFNKMTESN 507

Query: 347 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
             P  VT+NAV+ G   +  + +A ++++ M+  G+  D+ TY  +I GLC ++   +AK
Sbjct: 508 LEPNEVTFNAVIEGYCLVGDIRKAFQLYDQMMCRGLTPDNYTYRSLISGLCLTDGASKAK 567

Query: 407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466
            F  D+    ++ + +   A++ G CR G++ EA H   E+   G   +++ + +++  A
Sbjct: 568 EFVADLENNCSVLNKFSLTALLHGFCREGRLTEAYHVWNEMAMWGGKLDLISFTIIVYAA 627

Query: 467 CKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
            K     ++  + REM++ G+ PD V    +  ++   GN
Sbjct: 628 LKQHDSEKSCVLFREMKEKGVRPDNVFHTCMINMYSKEGN 667



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 90/337 (26%), Positives = 154/337 (45%), Gaps = 2/337 (0%)

Query: 161 VVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLC 220
           V+++    G+ P   + + I+  L K      A  L +  +  G L  E+ Y   +   C
Sbjct: 149 VLHLSLSAGIAPDQHTASQILFSLVKIRQFALARHLFDGMLHSGVLLDEYVYTAGIRAYC 208

Query: 221 GESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVI 280
              +L+ A+ ++  M  + D       N+ +  LC  +   E ++V   ML      D +
Sbjct: 209 EVRNLDGAKGLVARMQDEGDKVSAVPYNVLIYGLCKNQRVREAVDVKNSMLARGVAADEV 268

Query: 281 TLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQ 340
           T  T++ GFC+   ++ AL++  DM    F  P     + ++ GL   GR++EA  L  Q
Sbjct: 269 TCRTLVYGFCRTEELDMALEMTGDMARLGF-VPSEANCSFMLDGLRKKGRVEEAFRLACQ 327

Query: 341 VMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN 400
           +   R   P I  YNA+L  + +     EA  + N M   G+  +  TYAI+I  LC+  
Sbjct: 328 LGELR-MVPNIFAYNALLNNMCKNGMFSEADRLVNEMSDKGLEPNEVTYAILIHSLCKRG 386

Query: 401 QLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYN 460
            +D+A    D +         Y Y ++I   C+   +  A+ FL E+V+ G+TPN   Y+
Sbjct: 387 MMDDALCMLDRMREKGVRMTVYPYNSLINCCCKKDDLDMAMGFLSEMVEIGLTPNAASYS 446

Query: 461 VVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            VI G C+      A ++ R+M + G+  +  T+  L
Sbjct: 447 PVIAGLCRKGDLSGAVELHRKMAEKGVAWNTYTFTAL 483



 Score = 40.0 bits (92), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 3/86 (3%)

Query: 3   QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           +LC    + EA +L+ +M  +G  P++V+Y  LI      GE D    ++ +M   GV P
Sbjct: 800 ELCKKGDINEAIELWNEMLYKGVKPDIVAYNILIRWCNIHGESDKCLGIYIDMVKKGVQP 859

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMF 88
           N  T+  L  G   T  + + N LM 
Sbjct: 860 NWHTHRALFVG---TSLMSKGNTLML 882


>gi|6633829|gb|AAF19688.1|AC009519_22 F1N19.15 [Arabidopsis thaliana]
          Length = 1048

 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 125/454 (27%), Positives = 221/454 (48%), Gaps = 15/454 (3%)

Query: 38  GYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEE 97
           G+  +   + A+ +F EM H   LP+ + ++ L+      R  E   V+ F   ++M E 
Sbjct: 45  GFLHSIRFEDAFALFFEMVHSQPLPSIVDFTRLLTATANLRRYE--TVIYFS--QKM-EL 99

Query: 98  EDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHG 157
             +S +  +F  L+   CR   ++    +   M +          G ++   C   R   
Sbjct: 100 YGISHDLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGD 159

Query: 158 ASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVE 217
           A  +V +M K G  P++V YN+++ GLCK+G    A +LL E  + G      TY  L+ 
Sbjct: 160 AFSLVILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLT 219

Query: 218 GLCGESDLEKARKVLQFMLSKKD----VDRTRICNIYLRALCLIKNPTELLNVLVFMLQT 273
           GLC       A ++L+ M+ +      V  T + +++++      N  E   +   M+Q+
Sbjct: 220 GLCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQ----GNLDEAQELYKEMIQS 275

Query: 274 QCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQE 333
              P+ +T N++ING C  GR+ +A K   D++A K C P+ VT+ T+I G      + E
Sbjct: 276 SVDPNNVTYNSIINGLCMHGRLYDAKKTF-DLMASKGCFPNVVTYNTLISGFCKFRMVDE 334

Query: 334 ALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVI 393
            + L +Q M   G++  I TYN ++ G  ++ ++  A ++F  M+   V  D  T+ I++
Sbjct: 335 GMKL-FQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILL 393

Query: 394 DGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVT 453
            GLC + +++ A   +DD+           Y  MI GLC++ K+ +A      L   GV 
Sbjct: 394 HGLCVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGVK 453

Query: 454 PNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
           P+   Y ++I G CK   +REA +++R M++ G+
Sbjct: 454 PDARTYTIMILGLCKNGPRREADELIRRMKEEGI 487



 Score =  171 bits (434), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 123/491 (25%), Positives = 231/491 (47%), Gaps = 45/491 (9%)

Query: 9    RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
            +  +A  LF +M     +P++V +T ++    +  + D+   ++ +M + G+  +  +++
Sbjct: 584  KFDDAFSLFCEMLQSRPIPSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFT 643

Query: 69   VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
            +L+    R   +  A  L+ K+   MK     S+      +L++  C+     E   + +
Sbjct: 644  ILIHCFCRCSRLSLALALLGKM---MKLGFRPSI--VTLGSLLNGFCQGNRFQEAVSLVD 698

Query: 129  DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
             M     V        +I+ LC++   + A  V Y M K+G+    V+YN+++ GL   G
Sbjct: 699  SMDGFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSG 758

Query: 189  GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
                A +LL + ++    P+   +  L++    E +L +AR + + M+ +  V       
Sbjct: 759  RWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVV------- 811

Query: 249  IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 308
                                        P+V T N++INGFC  G + +A K + D++  
Sbjct: 812  ----------------------------PNVFTYNSLINGFCIHGCLGDA-KYMFDLMVS 842

Query: 309  KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE 368
            K C PD VT+ T+I G     R+++ + L  + M  +G      TYN ++ G  +  ++ 
Sbjct: 843  KGCFPDVVTYNTLITGFCKSKRVEDGMKLFCE-MTYQGLVGDAFTYNTLIHGYCQAGKLN 901

Query: 369  EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI 428
             A++VFN M+  GV  D  TY I++D LC + ++++A    +D+       D   Y  +I
Sbjct: 902  VAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIII 961

Query: 429  KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLN 488
            +GLCR+ K+ EA      L   GV P+ + Y  +I G C+  ++REA ++ R M+++G  
Sbjct: 962  QGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREADKLCRRMKEDGFM 1021

Query: 489  PDAVTWRILDK 499
            P   + RI D+
Sbjct: 1022 P---SERIYDE 1029



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 114/390 (29%), Positives = 185/390 (47%), Gaps = 15/390 (3%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRG---VLR 76
           M+  G   ++ S+T LIH +CR   +  A  V  +M   G  P+ +T+  L+ G   V R
Sbjct: 97  MELYGISHDLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNR 156

Query: 77  TRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSV 136
             D     +LM K             N   +  L+D LC+ G +N    +  +M +    
Sbjct: 157 IGDAFSLVILMVK--------SGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLG 208

Query: 137 NEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQL 196
            +      ++  LC SGR   A+R++  M KR + P +V++ +++    K G    A +L
Sbjct: 209 ADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQEL 268

Query: 197 LEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCL 256
            +E IQ    P+  TY  ++ GLC    L  A+K    M SK         N  +   C 
Sbjct: 269 YKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCK 328

Query: 257 IKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAV 316
            +   E + +   M       D+ T NT+I+G+C++G++  AL +   MV+ +   PD +
Sbjct: 329 FRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRV-TPDII 387

Query: 317 TFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNC 376
           T   ++ GL   G I+ AL + +  M +     GIV YN ++ GL +  +VE+A E+F C
Sbjct: 388 THCILLHGLCVNGEIESAL-VKFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELF-C 445

Query: 377 MLGI-GVVADSTTYAIVIDGLCESNQLDEA 405
            L + GV  D+ TY I+I GLC++    EA
Sbjct: 446 RLPVEGVKPDARTYTIMILGLCKNGPRREA 475



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 90/343 (26%), Positives = 168/343 (48%), Gaps = 22/343 (6%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C ++R+G+A  L   M   G+ PNVV Y TLI G C+ GE+++A ++ +EM   G+  +
Sbjct: 151 FCLVNRIGDAFSLVILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGAD 210

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY+ L+ G+  +     A  ++  + +R      ++ +   F  L+D   ++G ++E 
Sbjct: 211 VVTYNTLLTGLCYSGRWSDAARMLRDMMKR-----SINPDVVTFTALIDVFVKQGNLDEA 265

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             + ++M Q            +I+ LC  GR + A +   +M  +G  P++V+YN+++ G
Sbjct: 266 QELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISG 325

Query: 184 LCKHGGCMRAYQLLEEGIQF-------GYLPSEHTYKVLVEGLCGESDLEKARKVLQFML 236
            CK       +++++EG++        G+     TY  L+ G C    L  A  +  +M+
Sbjct: 326 FCK-------FRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMV 378

Query: 237 SKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIE 296
           S++         I L  LC+       L     M +++    ++  N +I+G CK  ++E
Sbjct: 379 SRRVTPDIITHCILLHGLCVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGLCKADKVE 438

Query: 297 EALKVLNDM-VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLL 338
           +A ++   + V G    PDA T+T +I GL   G  +EA  L+
Sbjct: 439 KAWELFCRLPVEG--VKPDARTYTIMILGLCKNGPRREADELI 479



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 98/359 (27%), Positives = 167/359 (46%), Gaps = 7/359 (1%)

Query: 1    MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
            ++  C  +R  EA  L   M   G VPNVV Y T+I+G C+  +++ A +VF  M   G+
Sbjct: 681  LNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGI 740

Query: 61   LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
              +++TY+ L+ G+  +     A  L+  + +R      +  N   F  L+D+  +EG +
Sbjct: 741  RADAVTYNTLISGLSNSGRWTDAARLLRDMVKR-----KIDPNVIFFTALIDTFVKEGNL 795

Query: 121  NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
             E   + ++M +   V   F    +I+  C  G    A  +  +M  +G  P +V+YN++
Sbjct: 796  LEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTL 855

Query: 181  VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
            + G CK        +L  E    G +    TY  L+ G C    L  A+KV   M+    
Sbjct: 856  ITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGV 915

Query: 241  VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                   NI L  LC      + L ++  + +++   D+IT N +I G C+  +++EA  
Sbjct: 916  SPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQGLCRTDKLKEAWC 975

Query: 301  VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
            +   +   K   PDA+ + T+I GL   G  +EA + L + M + G+ P    Y+  LR
Sbjct: 976  LFRSLTR-KGVKPDAIAYITMISGLCRKGLQREA-DKLCRRMKEDGFMPSERIYDETLR 1032



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/255 (29%), Positives = 129/255 (50%), Gaps = 4/255 (1%)

Query: 248 NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA 307
            I +   C     +  L+VL  M++   +P ++T  ++++GFC + RI +A  ++  MV 
Sbjct: 110 TILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVK 169

Query: 308 GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRV 367
             +  P+ V + T+I GL   G +  AL LL + M ++G    +VTYN +L GL    R 
Sbjct: 170 SGY-EPNVVVYNTLIDGLCKNGELNIALELLNE-MEKKGLGADVVTYNTLLTGLCYSGRW 227

Query: 368 EEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAM 427
            +A  +   M+   +  D  T+  +ID   +   LDEA+  + +++  S   +N  Y ++
Sbjct: 228 SDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSI 287

Query: 428 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
           I GLC  G++++A      +   G  PN+V YN +I G CK  M  E  ++ + M   G 
Sbjct: 288 INGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGF 347

Query: 488 NPDAVTWRILDKLHG 502
           N D  T+  L  +HG
Sbjct: 348 NADIFTYNTL--IHG 360



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 113/522 (21%), Positives = 219/522 (41%), Gaps = 31/522 (5%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   R+ +A K F  M S+G  PNVV+Y TLI G+C+   +D   K+F  M   G 
Sbjct: 288 INGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGF 347

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             +  TY+ L+ G  +   + R  + +F      +   D+  +      L+  LC  G +
Sbjct: 348 NADIFTYNTLIHGYCQVGKL-RVALDIFCWMVSRRVTPDIITH----CILLHGLCVNGEI 402

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                  +DM + +      A   MI  LC++ +   A  +   +   G+ P   +Y  +
Sbjct: 403 ESALVKFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGVKPDARTYTIM 462

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GLCK+G    A +L+    + G +   +     +E        E +    +  LS ++
Sbjct: 463 ILGLCKNGPRREADELIRRMKEEGIICQMNAEDDHLE--------EHSSSNKEISLSLRE 514

Query: 241 V-DRTRICNIYLRALCLIKNPTELLNVL---VFMLQTQCQPDVITLNTVINGFCKMGRIE 296
           + +R++    +++ L  I   + +   +     +L+    P+  +L+   +G        
Sbjct: 515 IWERSKSNPFWMQRLIPIAFSSSVKGFVRRHYLLLERGNNPET-SLSRSFSGASHHHHYR 573

Query: 297 EALK-----VLNDMVAGKFCA-------PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ 344
           E L+     +  D     FC        P  V FT ++  +  + +    +  LY  M  
Sbjct: 574 ERLRNELHCIKFDDAFSLFCEMLQSRPIPSIVDFTRVLTVIAKMNKFDIVI-YLYHKMEN 632

Query: 345 RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 404
            G S  + ++  ++    R  R+  A  +   M+ +G      T   +++G C+ N+  E
Sbjct: 633 LGISHDLYSFTILIHCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQE 692

Query: 405 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
           A    D +     + +  +Y  +I GLC++  ++ A+   Y +   G+  + V YN +I 
Sbjct: 693 AVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLIS 752

Query: 465 GACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           G        +A ++LR+M K  ++P+ + +  L       GN
Sbjct: 753 GLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGN 794



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 104/220 (47%), Gaps = 2/220 (0%)

Query: 287 NGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
            GF    R E+A  +  +MV  +   P  V FT ++    N+ R  E +    Q M   G
Sbjct: 44  TGFLHSIRFEDAFALFFEMVHSQ-PLPSIVDFTRLLTATANLRR-YETVIYFSQKMELYG 101

Query: 347 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
            S  + ++  ++    R  R+  A  V   M+ +G      T+  ++ G C  N++ +A 
Sbjct: 102 ISHDLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAF 161

Query: 407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466
                +V      +  VY  +I GLC++G+++ A+  L E+   G+  ++V YN ++ G 
Sbjct: 162 SLVILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGL 221

Query: 467 CKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           C      +A ++LR+M K  +NPD VT+  L  +   +GN
Sbjct: 222 CYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGN 261


>gi|302816541|ref|XP_002989949.1| hypothetical protein SELMODRAFT_130917 [Selaginella moellendorffii]
 gi|300142260|gb|EFJ08962.1| hypothetical protein SELMODRAFT_130917 [Selaginella moellendorffii]
          Length = 447

 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 131/497 (26%), Positives = 236/497 (47%), Gaps = 61/497 (12%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           +A +LF ++ +    PN  +Y  LI G+C+ G+M  A  VF +M+  G+LPN+ T + L+
Sbjct: 8   QALRLFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKSSGLLPNASTMNTLL 67

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP 131
            G+     +  A     KL+  M+    L  + A+   L+      G   E F+   +M 
Sbjct: 68  LGLCEIGQMSSA----LKLFREMQAGPFLPTS-ASHNILLRGFFMAGRAIEFFK---EM- 118

Query: 132 QGKSVNEEFACGH-MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGC 190
           +   V  +    H ++ +L  SGR   A  +   M     +P +++YN ++ G CK G  
Sbjct: 119 KASGVEPDLESYHILLSALSDSGRMAEAHALFSAMT---CSPDIMTYNVLMDGYCKIGQT 175

Query: 191 MRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIY 250
             A  L++E ++ GY P+  TY +++   C    +E+A +V  FM               
Sbjct: 176 YEAQSLMKEILKAGYEPNVFTYSIIINCYCKLDKVEEAWEV--FMK-------------- 219

Query: 251 LRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKF 310
                              M+++ C P+ +T NT+I GFCK G +E+A+K+  +M     
Sbjct: 220 -------------------MIESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIG- 259

Query: 311 CAPDAVTFTTIIFGLLNV-GRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEE 369
           C    VT+ T+I  L    G +  A++L +  +   G +P IVTYN++++G     R  +
Sbjct: 260 CKATIVTYNTLIDSLCKKRGGVYTAVDL-FNKLEGAGLTPTIVTYNSLIQGF--SERAND 316

Query: 370 AKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIK 429
              +   M   G   D  TY  +I GLC +N++++A+R ++ +    N+     +  +I+
Sbjct: 317 GLRLLCHMHAEGCKPDVITYNCLISGLCSANRVEDAQRLFNGMACAPNVT---TFNFLIR 373

Query: 430 GLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNP 489
           GLC   K+ EA + L    D    P++  +N +I   CK     +A +++++M K+G  P
Sbjct: 374 GLCAQKKVEEARNIL----DRMTAPDMTTFNTIILAFCKAGAMHDAREVMKDMLKHGFYP 429

Query: 490 DA-VTWRILDKLHGNRG 505
           +   T+ +   +  ++G
Sbjct: 430 NTYTTYALAHGIQSSKG 446



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 116/438 (26%), Positives = 206/438 (47%), Gaps = 36/438 (8%)

Query: 6   GLSRVGEAHK---LFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           G  + G+ H+   +F DMKS G +PN  +  TL+ G C  G+M  A K+F EM+    LP
Sbjct: 34  GFCKGGQMHQAVSVFSDMKSSGLLPNASTMNTLLLGLCEIGQMSSALKLFREMQAGPFLP 93

Query: 63  NSLTYSVLVRGVLRT-RDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVN 121
            S ++++L+RG     R +E      FK  +    E DL   +   + L DS  R    +
Sbjct: 94  TSASHNILLRGFFMAGRAIE-----FFKEMKASGVEPDLESYHILLSALSDS-GRMAEAH 147

Query: 122 EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
            +F      P   + N       ++D  C+ G+ + A  ++  + K G  P++ +Y+ I+
Sbjct: 148 ALFSAMTCSPDIMTYNV------LMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTYSIII 201

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
           +  CK      A+++  + I+   +P+  T+  L+ G C    LE A K+   M  K   
Sbjct: 202 NCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEM-EKIGC 260

Query: 242 DRTRIC-NIYLRALCL----IKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIE 296
             T +  N  + +LC     +    +L N L         P ++T N++I GF +  R  
Sbjct: 261 KATIVTYNTLIDSLCKKRGGVYTAVDLFNKLE---GAGLTPTIVTYNSLIQGFSE--RAN 315

Query: 297 EALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
           + L++L  M A + C PD +T+  +I GL +  R+++A  L   +      +P + T+N 
Sbjct: 316 DGLRLLCHMHA-EGCKPDVITYNCLISGLCSANRVEDAQRLFNGM----ACAPNVTTFNF 370

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416
           ++RGL   ++VEEA+ + + M       D TT+  +I   C++  + +A+    D++   
Sbjct: 371 LIRGLCAQKKVEEARNILDRM----TAPDMTTFNTIILAFCKAGAMHDAREVMKDMLKHG 426

Query: 417 NIHDNYVYAAMIKGLCRS 434
              + Y   A+  G+  S
Sbjct: 427 FYPNTYTTYALAHGIQSS 444



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 102/394 (25%), Positives = 181/394 (45%), Gaps = 30/394 (7%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC + ++  A KLF +M++   +P   S+  L+ G+   G    A + F EM+  GV P+
Sbjct: 70  LCEIGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMAGR---AIEFFKEMKASGVEPD 126

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             +Y +L+  +  +  +  A+     L+  M    D+   N     L+D  C+ G   E 
Sbjct: 127 LESYHILLSALSDSGRMAEAHA----LFSAMTCSPDIMTYNV----LMDGYCKIGQTYEA 178

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             + +++ +       F    +I+  C+  +   A  V   M +    P+ V++N+++ G
Sbjct: 179 QSLMKEILKAGYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAG 238

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK G    A +L  E  + G   +  TY  L++ LC     +K   V   +     ++ 
Sbjct: 239 FCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLC-----KKRGGVYTAVDLFNKLEG 293

Query: 244 TRICNIYLRALCLIKNPTELLN----VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
             +    +    LI+  +E  N    +L  M    C+PDVIT N +I+G C   R+E+A 
Sbjct: 294 AGLTPTIVTYNSLIQGFSERANDGLRLLCHMHAEGCKPDVITYNCLISGLCSANRVEDAQ 353

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           ++ N M     CAP+  TF  +I GL    +++EA N+L      R  +P + T+N ++ 
Sbjct: 354 RLFNGMA----CAPNVTTFNFLIRGLCAQKKVEEARNIL-----DRMTAPDMTTFNTIIL 404

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADS-TTYAIV 392
              +   + +A+EV   ML  G   ++ TTYA+ 
Sbjct: 405 AFCKAGAMHDAREVMKDMLKHGFYPNTYTTYALA 438



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 89/331 (26%), Positives = 155/331 (46%), Gaps = 19/331 (5%)

Query: 186 KHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTR 245
           KH   +R ++ +  G+   + P+ HTY VL+ G C    + +A  V   M S   +    
Sbjct: 5   KHDQALRLFKEVLAGL---FAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKSSGLLPNAS 61

Query: 246 ICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM 305
             N  L  LC I   +  L +   M      P   + N ++ GF   GR   A++   +M
Sbjct: 62  TMNTLLLGLCEIGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMAGR---AIEFFKEM 118

Query: 306 VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLR 365
            A     PD  ++  ++  L + GR+ EA + L+  M     SP I+TYN ++ G  ++ 
Sbjct: 119 KASGV-EPDLESYHILLSALSDSGRMAEA-HALFSAMT---CSPDIMTYNVLMDGYCKIG 173

Query: 366 RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYA 425
           +  EA+ +   +L  G   +  TY+I+I+  C+ ++++EA   +  ++  + + +   + 
Sbjct: 174 QTYEAQSLMKEILKAGYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPNAVTFN 233

Query: 426 AMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKR----EAYQILRE 481
            +I G C++G + +A+    E+   G    IV YN +ID  CK   KR     A  +  +
Sbjct: 234 TLIAGFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLCK---KRGGVYTAVDLFNK 290

Query: 482 MRKNGLNPDAVTWRILDKLHGNRGNDFGLRI 512
           +   GL P  VT+  L +    R ND GLR+
Sbjct: 291 LEGAGLTPTIVTYNSLIQGFSERAND-GLRL 320


>gi|326527027|dbj|BAK04455.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 860

 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 129/496 (26%), Positives = 224/496 (45%), Gaps = 43/496 (8%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHV--PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVL 61
           LC  S    A  LF  M   G    PNVV+Y T+IHG+ + GE   A  +F EM   GV 
Sbjct: 238 LCDNSMSQRALDLFQMMAKEGGACSPNVVAYNTVIHGFFKEGETGKACSLFHEMTRQGVK 297

Query: 62  PNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVN 121
           P+ +TY++++  + + R +++A +++ ++             N A  + V   C      
Sbjct: 298 PDVVTYNLIIDALCKARAMDKAELVLRQM-----------TTNGAQPDTVTYNC------ 340

Query: 122 EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
                                  MI      GR   A+++   M+ RGL P++V  NS +
Sbjct: 341 -----------------------MIHGYATLGRLKEAAKMFRKMKSRGLIPNIVICNSFL 377

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
             LCKHG    A ++ +     G+ P   +Y  L+ G   E        +   M S    
Sbjct: 378 ASLCKHGRSKEAAEIFDSMTAKGHKPDIVSYCTLLHGYASEGWFADMIGLFNSMKSNGIA 437

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
              R+ NI + A        + + +   M Q    PDV+T +TVI+ F +MGR+ +A++ 
Sbjct: 438 ADCRVFNILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISAFSRMGRLTDAMEK 497

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
            N MVA +   P+   + +II G    G + +A  L+ +++ +    P IV +N+V+  L
Sbjct: 498 FNQMVA-RGIQPNTAVYHSIIQGFCMHGGLVKAKELVSEMINKGIPRPDIVFFNSVINSL 556

Query: 362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
            +  RV +A ++F+ +  IG   D  T+  +IDG C   ++D+A +  D +       D 
Sbjct: 557 CKDGRVMDAHDIFDLVTDIGERPDVITFTSLIDGYCLVGKMDKAFKILDAMEVVGVETDI 616

Query: 422 YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
             Y+ ++ G  ++G+I++ +    E+   GV PN V Y +++ G  +      A +   E
Sbjct: 617 VTYSTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHE 676

Query: 482 MRKNGLNPDAVTWRIL 497
           M ++G       + I+
Sbjct: 677 MIESGTTVTVSIYGII 692



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 126/504 (25%), Positives = 237/504 (47%), Gaps = 17/504 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    + +A  +   M + G  P+ V+Y  +IHGY   G +  A K+F +M+  G+
Sbjct: 307 IDALCKARAMDKAELVLRQMTTNGAQPDTVTYNCMIHGYATLGRLKEAAKMFRKMKSRGL 366

Query: 61  LPN-SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGY 119
           +PN  +  S L       R  E A +  F        + D+     ++  L+     EG+
Sbjct: 367 IPNIVICNSFLASLCKHGRSKEAAEI--FDSMTAKGHKPDI----VSYCTLLHGYASEGW 420

Query: 120 VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
             ++  +   M       +      +I +  + G    A  +   M+++G++P +V+Y++
Sbjct: 421 FADMIGLFNSMKSNGIAADCRVFNILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYST 480

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++    + G    A +   + +  G  P+   Y  +++G C    L KA++++  M++ K
Sbjct: 481 VISAFSRMGRLTDAMEKFNQMVARGIQPNTAVYHSIIQGFCMHGGLVKAKELVSEMIN-K 539

Query: 240 DVDRTRIC--NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
            + R  I   N  + +LC      +  ++   +     +PDVIT  ++I+G+C +G++++
Sbjct: 540 GIPRPDIVFFNSVINSLCKDGRVMDAHDIFDLVTDIGERPDVITFTSLIDGYCLVGKMDK 599

Query: 298 ALKVLNDM-VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
           A K+L+ M V G     D VT++T++ G    GRI + L  L++ M ++G  P  VTY  
Sbjct: 600 AFKILDAMEVVG--VETDIVTYSTLLDGYFKNGRINDGLT-LFREMQRKGVKPNTVTYGI 656

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416
           +L GLFR  R   A++ F+ M+  G     + Y I++ GLC +N  DEA   +  +   +
Sbjct: 657 MLAGLFRAGRTVAARKKFHEMIESGTTVTVSIYGIILGGLCRNNCADEAIILFQKLGTMN 716

Query: 417 NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAY 476
                 +   MI  + +  +  EA      +  SG+ PN   Y V+I    K     +A 
Sbjct: 717 VKFSITILNTMINAMYKVQRKEEAKELFATISASGLLPNESTYGVMIINLLKDGAVEDAN 776

Query: 477 QILREMRKNGLNPDAVTWRILDKL 500
            +   M K+G+ P +   R+L+++
Sbjct: 777 NMFSSMEKSGIVPGS---RLLNRI 797



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 121/478 (25%), Positives = 224/478 (46%), Gaps = 14/478 (2%)

Query: 26  VP-NVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERA- 83
           VP  V +Y+ L+   CR    D+   +F  +   G+  + +T S L++ +      E A 
Sbjct: 153 VPLTVHTYSILMDCCCRARRPDLGLVLFGCILRTGLKIHQITASTLLKCLCYANRTEEAV 212

Query: 84  NVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQ--GKSVNEEFA 141
           NVL+ ++      E     N  +++ ++  LC          + + M +  G       A
Sbjct: 213 NVLLHRM-----SELGCVPNVFSYSIILKGLCDNSMSQRALDLFQMMAKEGGACSPNVVA 267

Query: 142 CGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGI 201
              +I    + G    A  + + M ++G+ P +V+YN I+  LCK     +A  +L +  
Sbjct: 268 YNTVIHGFFKEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMT 327

Query: 202 QFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPT 261
             G  P   TY  ++ G      L++A K+ + M S+  +    ICN +L +LC      
Sbjct: 328 TNGAQPDTVTYNCMIHGYATLGRLKEAAKMFRKMKSRGLIPNIVICNSFLASLCKHGRSK 387

Query: 262 ELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTI 321
           E   +   M     +PD+++  T+++G+   G   + + + N M +    A D   F  +
Sbjct: 388 EAAEIFDSMTAKGHKPDIVSYCTLLHGYASEGWFADMIGLFNSMKSNGIAA-DCRVFNIL 446

Query: 322 IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG 381
           I      G + +A+ L++  M Q+G SP +VTY+ V+    R+ R+ +A E FN M+  G
Sbjct: 447 IHAYAKRGMVDDAM-LIFTEMQQQGVSPDVVTYSTVISAFSRMGRLTDAMEKFNQMVARG 505

Query: 382 VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV-YAAMIKGLCRSGKIHEA 440
           +  ++  Y  +I G C    L +AK    +++       + V + ++I  LC+ G++ +A
Sbjct: 506 IQPNTAVYHSIIQGFCMHGGLVKAKELVSEMINKGIPRPDIVFFNSVINSLCKDGRVMDA 565

Query: 441 VHFLYELV-DSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            H +++LV D G  P+++ +  +IDG C +    +A++IL  M   G+  D VT+  L
Sbjct: 566 -HDIFDLVTDIGERPDVITFTSLIDGYCLVGKMDKAFKILDAMEVVGVETDIVTYSTL 622



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 114/458 (24%), Positives = 201/458 (43%), Gaps = 8/458 (1%)

Query: 7   LSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLT 66
           L R+ EA K+F  MKSRG +PN+V   + +   C+ G    A ++FD M   G  P+ ++
Sbjct: 348 LGRLKEAAKMFRKMKSRGLIPNIVICNSFLASLCKHGRSKEAAEIFDSMTAKGHKPDIVS 407

Query: 67  YSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRI 126
           Y  L+ G       E     M  L+  MK    ++ +   F  L+ +  + G V++   I
Sbjct: 408 YCTLLHGYAS----EGWFADMIGLFNSMKSN-GIAADCRVFNILIHAYAKRGMVDDAMLI 462

Query: 127 AEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK 186
             +M Q     +      +I +  R GR   A      M  RG+ P+   Y+SI+ G C 
Sbjct: 463 FTEMQQQGVSPDVVTYSTVISAFSRMGRLTDAMEKFNQMVARGIQPNTAVYHSIIQGFCM 522

Query: 187 HGGCMRAYQLLEEGIQFGYL-PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTR 245
           HGG ++A +L+ E I  G   P    +  ++  LC +  +  A  +   +    +     
Sbjct: 523 HGGLVKAKELVSEMINKGIPRPDIVFFNSVINSLCKDGRVMDAHDIFDLVTDIGERPDVI 582

Query: 246 ICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM 305
                +   CL+    +   +L  M     + D++T +T+++G+ K GRI + L +  +M
Sbjct: 583 TFTSLIDGYCLVGKMDKAFKILDAMEVVGVETDIVTYSTLLDGYFKNGRINDGLTLFREM 642

Query: 306 VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLR 365
              K   P+ VT+  ++ GL   GR   A    ++ M + G +  +  Y  +L GL R  
Sbjct: 643 -QRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHE-MIESGTTVTVSIYGIILGGLCRNN 700

Query: 366 RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYA 425
             +EA  +F  +  + V    T    +I+ + +  + +EAK  +  I     + +   Y 
Sbjct: 701 CADEAIILFQKLGTMNVKFSITILNTMINAMYKVQRKEEAKELFATISASGLLPNESTYG 760

Query: 426 AMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463
            MI  L + G + +A +    +  SG+ P     N +I
Sbjct: 761 VMIINLLKDGAVEDANNMFSSMEKSGIVPGSRLLNRII 798



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 73/298 (24%), Positives = 131/298 (43%), Gaps = 3/298 (1%)

Query: 210 HTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVF 269
           HTY +L++  C     +    +   +L           +  L+ LC      E +NVL+ 
Sbjct: 158 HTYSILMDCCCRARRPDLGLVLFGCILRTGLKIHQITASTLLKCLCYANRTEEAVNVLLH 217

Query: 270 -MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA-GKFCAPDAVTFTTIIFGLLN 327
            M +  C P+V + + ++ G C     + AL +   M   G  C+P+ V + T+I G   
Sbjct: 218 RMSELGCVPNVFSYSIILKGLCDNSMSQRALDLFQMMAKEGGACSPNVVAYNTVIHGFFK 277

Query: 328 VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADST 387
            G   +A +L ++ M ++G  P +VTYN ++  L + R +++A+ V   M   G   D+ 
Sbjct: 278 EGETGKACSLFHE-MTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTNGAQPDTV 336

Query: 388 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYEL 447
           TY  +I G     +L EA + +  +     I +  +  + +  LC+ G+  EA      +
Sbjct: 337 TYNCMIHGYATLGRLKEAAKMFRKMKSRGLIPNIVICNSFLASLCKHGRSKEAAEIFDSM 396

Query: 448 VDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
              G  P+IV Y  ++ G        +   +   M+ NG+  D   + IL   +  RG
Sbjct: 397 TAKGHKPDIVSYCTLLHGYASEGWFADMIGLFNSMKSNGIAADCRVFNILIHAYAKRG 454



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 137/305 (44%), Gaps = 11/305 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   RV +AH +F  +   G  P+V+++T+LI GYC  G+MD A+K+ D M   GV
Sbjct: 553 INSLCKDGRVMDAHDIFDLVTDIGERPDVITFTSLIDGYCLVGKMDKAFKILDAMEVVGV 612

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             + +TYS L+ G  +   +     L      R  + + +  N   +  ++  L R G  
Sbjct: 613 ETDIVTYSTLLDGYFKNGRINDGLTLF-----REMQRKGVKPNTVTYGIMLAGLFRAGRT 667

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRG---LTPSLVSY 177
               +   +M +  +       G ++  LC   RN+ A   + + +K G   +  S+   
Sbjct: 668 VAARKKFHEMIESGTTVTVSIYGIILGGLC---RNNCADEAIILFQKLGTMNVKFSITIL 724

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
           N++++ + K      A +L       G LP+E TY V++  L  +  +E A  +   M  
Sbjct: 725 NTMINAMYKVQRKEEAKELFATISASGLLPNESTYGVMIINLLKDGAVEDANNMFSSMEK 784

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
              V  +R+ N  +R L       +  N L  +   +   +  T + +++ F + G+  E
Sbjct: 785 SGIVPGSRLLNRIIRMLLEKGEIAKAGNYLSKVDGKRILLEASTTSLMLSLFSRKGKYHE 844

Query: 298 ALKVL 302
            +K+L
Sbjct: 845 DMKLL 849


>gi|302763707|ref|XP_002965275.1| hypothetical protein SELMODRAFT_83272 [Selaginella moellendorffii]
 gi|300167508|gb|EFJ34113.1| hypothetical protein SELMODRAFT_83272 [Selaginella moellendorffii]
          Length = 445

 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 121/470 (25%), Positives = 222/470 (47%), Gaps = 50/470 (10%)

Query: 18  FDMKSRGH-VPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLT--YSVLVRGV 74
            D K+ G  V +  +Y TL+HG+C  GE D A ++  E +  G+ P SL   ++++++G 
Sbjct: 2   LDRKTLGEFVHSEFTYGTLVHGHCLAGEFDEAKRLVAEFKDTGMSPGSLVVLHNLMLKGF 61

Query: 75  LRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGK 134
              R V+ A   + ++        D   N+ ++  L                        
Sbjct: 62  SEARLVDEAKSHLHRM--------DCKPNSVSYNTL------------------------ 89

Query: 135 SVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAY 194
                      ID+LC SGR   A   +  M KRG+ P+ V+YN++  GL K G    A+
Sbjct: 90  -----------IDALCSSGRIQEAREELQAMAKRGVAPNRVTYNAMATGLGKAGLLDEAF 138

Query: 195 QLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRAL 254
           +L+      G+  +  T+  +VE LC     ++A KV++ ML +         N+ L A 
Sbjct: 139 ELMGVMESAGFALTAVTFNPVVEFLCKSGKPDEACKVMETMLLRNIEPNILTLNLILHAF 198

Query: 255 CLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPD 314
           C    P E L +   M++    P ++T N ++  FC   +++ A ++L  M   K C P+
Sbjct: 199 CKAARPEEALGMTDIMVEMGFCPTIVTFNALLELFCNTDQMDSAAELLETMARSK-CKPN 257

Query: 315 AVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVF 374
            VT++ ++     +GR+ EA   L Q++   GY+P ++  NA + GL +   ++ A    
Sbjct: 258 FVTYSIMVQKFAEMGRMVEARAFLEQLVVC-GYAPNLLVCNAYVAGLCKTGEMDLASRFL 316

Query: 375 NCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRS 434
             M   G  A++ TY  +++G C+  ++DEA+R  ++++   ++ D+  Y+ +I+GLC +
Sbjct: 317 TVMAEEGCRANTATYNSLVEGFCKLGRMDEAERVLEEMIAEGSLPDSTTYSVLIQGLCSA 376

Query: 435 GKIHEAVHFLYELVDS--GVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
           G+I  A   + ++  +     P+   +  +I+  C+L     A  +L  M
Sbjct: 377 GQIVHAFMVMLQVTRAVESARPDPATFVKLIEKLCELGEMDRAALVLERM 426



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 102/371 (27%), Positives = 175/371 (47%), Gaps = 15/371 (4%)

Query: 133 GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTP-SLVSYNSIVHGLCKHGGCM 191
           G+ V+ EF  G ++   C +G    A R+V   +  G++P SLV    ++H L   G   
Sbjct: 8   GEFVHSEFTYGTLVHGHCLAGEFDEAKRLVAEFKDTGMSPGSLV----VLHNLMLKG--F 61

Query: 192 RAYQLLEEGIQFGY----LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC 247
              +L++E     +     P+  +Y  L++ LC    +++AR+ LQ M +K+ V   R+ 
Sbjct: 62  SEARLVDEAKSHLHRMDCKPNSVSYNTLIDALCSSGRIQEAREELQAM-AKRGVAPNRVT 120

Query: 248 -NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV 306
            N     L       E   ++  M         +T N V+   CK G+ +EA KV+  M+
Sbjct: 121 YNAMATGLGKAGLLDEAFELMGVMESAGFALTAVTFNPVVEFLCKSGKPDEACKVMETML 180

Query: 307 AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 366
                 P+ +T   I+       R +EAL +   +M + G+ P IVT+NA+L       +
Sbjct: 181 LRNI-EPNILTLNLILHAFCKAARPEEALGM-TDIMVEMGFCPTIVTFNALLELFCNTDQ 238

Query: 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAA 426
           ++ A E+   M       +  TY+I++    E  ++ EA+ F + +V      +  V  A
Sbjct: 239 MDSAAELLETMARSKCKPNFVTYSIMVQKFAEMGRMVEARAFLEQLVVCGYAPNLLVCNA 298

Query: 427 MIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG 486
            + GLC++G++  A  FL  + + G   N   YN +++G CKL    EA ++L EM   G
Sbjct: 299 YVAGLCKTGEMDLASRFLTVMAEEGCRANTATYNSLVEGFCKLGRMDEAERVLEEMIAEG 358

Query: 487 LNPDAVTWRIL 497
             PD+ T+ +L
Sbjct: 359 SLPDSTTYSVL 369



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 77/335 (22%), Positives = 142/335 (42%), Gaps = 6/335 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   R+ EA +    M  RG  PN V+Y  +  G  + G +D A+++   M   G 
Sbjct: 90  IDALCSSGRIQEAREELQAMAKRGVAPNRVTYNAMATGLGKAGLLDEAFELMGVMESAGF 149

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
              ++T++ +V  + ++   + A  +M  +  R  E   L++N      ++ + C+    
Sbjct: 150 ALTAVTFNPVVEFLCKSGKPDEACKVMETMLLRNIEPNILTLN-----LILHAFCKAARP 204

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E   + + M +            +++  C + +   A+ ++  M +    P+ V+Y+ +
Sbjct: 205 EEALGMTDIMVEMGFCPTIVTFNALLELFCNTDQMDSAAELLETMARSKCKPNFVTYSIM 264

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           V    + G  + A   LE+ +  GY P+       V GLC   +++ A + L  M  +  
Sbjct: 265 VQKFAEMGRMVEARAFLEQLVVCGYAPNLLVCNAYVAGLCKTGEMDLASRFLTVMAEEGC 324

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
              T   N  +   C +    E   VL  M+     PD  T + +I G C  G+I  A  
Sbjct: 325 RANTATYNSLVEGFCKLGRMDEAERVLEEMIAEGSLPDSTTYSVLIQGLCSAGQIVHAFM 384

Query: 301 VLNDMV-AGKFCAPDAVTFTTIIFGLLNVGRIQEA 334
           V+  +  A +   PD  TF  +I  L  +G +  A
Sbjct: 385 VMLQVTRAVESARPDPATFVKLIEKLCELGEMDRA 419



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 100/225 (44%), Gaps = 5/225 (2%)

Query: 280 ITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR-IQEALNLL 338
            T  T+++G C  G  +EA +++ +           V    ++    +  R + EA + L
Sbjct: 15  FTYGTLVHGHCLAGEFDEAKRLVAEFKDTGMSPGSLVVLHNLMLKGFSEARLVDEAKSHL 74

Query: 339 YQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE 398
           +++       P  V+YN ++  L    R++EA+E    M   GV  +  TY  +  GL +
Sbjct: 75  HRM----DCKPNSVSYNTLIDALCSSGRIQEAREELQAMAKRGVAPNRVTYNAMATGLGK 130

Query: 399 SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVC 458
           +  LDEA      +           +  +++ LC+SGK  EA   +  ++   + PNI+ 
Sbjct: 131 AGLLDEAFELMGVMESAGFALTAVTFNPVVEFLCKSGKPDEACKVMETMLLRNIEPNILT 190

Query: 459 YNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGN 503
            N+++   CK +   EA  +   M + G  P  VT+  L +L  N
Sbjct: 191 LNLILHAFCKAARPEEALGMTDIMVEMGFCPTIVTFNALLELFCN 235



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 65/128 (50%), Gaps = 6/128 (4%)

Query: 6   GLSRVGE---AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           GL + GE   A +    M   G   N  +Y +L+ G+C+ G MD A +V +EM   G LP
Sbjct: 302 GLCKTGEMDLASRFLTVMAEEGCRANTATYNSLVEGFCKLGRMDEAERVLEEMIAEGSLP 361

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           +S TYSVL++G+     +  A ++M ++   +   E    + A F  L++ LC  G ++ 
Sbjct: 362 DSTTYSVLIQGLCSAGQIVHAFMVMLQVTRAV---ESARPDPATFVKLIEKLCELGEMDR 418

Query: 123 VFRIAEDM 130
              + E M
Sbjct: 419 AALVLERM 426



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 59/122 (48%), Gaps = 9/122 (7%)

Query: 388 TYAIVIDGLCESNQLDEAKR----FWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
           TY  ++ G C + + DEAKR    F D  + P ++    ++  M+KG   +  + EA   
Sbjct: 16  TYGTLVHGHCLAGEFDEAKRLVAEFKDTGMSPGSL--VVLHNLMLKGFSEARLVDEAKSH 73

Query: 444 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGN 503
           L+ +      PN V YN +ID  C     +EA + L+ M K G+ P+ VT+  +    G 
Sbjct: 74  LHRM---DCKPNSVSYNTLIDALCSSGRIQEAREELQAMAKRGVAPNRVTYNAMATGLGK 130

Query: 504 RG 505
            G
Sbjct: 131 AG 132


>gi|449444228|ref|XP_004139877.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
 gi|449492643|ref|XP_004159059.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
          Length = 585

 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 118/426 (27%), Positives = 213/426 (50%), Gaps = 19/426 (4%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRH------ 57
           LC   R+ EA +LF  M+  G  PNVV+Y TLI G CRTG +++A K+  EM +      
Sbjct: 171 LCMEHRISEATRLFIRMQKLGCWPNVVTYGTLIKGLCRTGNINLALKLHQEMLNGTSPYA 230

Query: 58  CGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCRE 117
               PN  +Y++++  + +    + A     +L+  M  ++ +  +   F+ L+D+LC+E
Sbjct: 231 INCKPNIFSYNIIIDELCKIGKWKEAK----RLFNEM-VDQGVRPDVVTFSALIDTLCKE 285

Query: 118 GYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
           G V E  +  E M     V + F    +I+  C  G    A  +   M  +G  P ++SY
Sbjct: 286 GMVIEAKKFLETMMLRGIVPDLFTFTSLIEGFCLVGDLDSAKELFLSMPSKGYEPDVISY 345

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
             +++G CK      A +L  E ++ G  P   T+ VL++GL     +  A+K+   +  
Sbjct: 346 TVLIYGYCKTFNVEEAMKLYNEMLRVGKWPDMKTFCVLLKGLFLAGKVGDAKKLFGVVKP 405

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
                   IC+++L  LC      E + +   +     + D+ + N +I+G CK  ++E 
Sbjct: 406 HAVPKNLYICSVFLDGLCKNGCLFEAMELFNELKSYNMKLDIESFNCLIDGLCKARKLET 465

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           A ++  + ++ +   PD VT+  +I G    G++  A N+L+Q+M + G +P ++TY+A+
Sbjct: 466 AWELF-EKLSQEGLQPDVVTYCIMINGFCKNGQVDNA-NILFQMMEENGCTPNLLTYSAL 523

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV--WP 415
           L G ++  ++EE  ++ + M+   V   ++ Y IV D + +    DE  R W DI+  +P
Sbjct: 524 LHGFYKNNKLEEVVKLLHKMIQKDVSLAASIYTIVEDMVSK----DEKCREWLDILQRFP 579

Query: 416 SNIHDN 421
              H +
Sbjct: 580 VQKHPS 585



 Score =  171 bits (433), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 125/507 (24%), Positives = 233/507 (45%), Gaps = 50/507 (9%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +  L  +    +   L+  M   G  PN  +   LI+  C    +         +   G 
Sbjct: 98  LGALAKIKHYSQVFSLYKKMHLAGLSPNFFTLNILINCLCNVNRVREGLSAMAGIMRRGY 157

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P+ +TY+ L++G+     +  A     +L+ RM ++     N   +  L+  LCR G +
Sbjct: 158 IPDVVTYTSLIKGLCMEHRISEAT----RLFIRM-QKLGCWPNVVTYGTLIKGLCRTGNI 212

Query: 121 NEVFRIAEDMPQGKS---VNEE---FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSL 174
           N   ++ ++M  G S   +N +   F+   +ID LC+ G+   A R+   M  +G+ P +
Sbjct: 213 NLALKLHQEMLNGTSPYAINCKPNIFSYNIIIDELCKIGKWKEAKRLFNEMVDQGVRPDV 272

Query: 175 VSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQF 234
           V++++++  LCK G  + A + LE  +  G +P   T+  L+EG C   DL+ A+++   
Sbjct: 273 VTFSALIDTLCKEGMVIEAKKFLETMMLRGIVPDLFTFTSLIEGFCLVGDLDSAKELFLS 332

Query: 235 MLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGR 294
           M SK                                     +PDVI+   +I G+CK   
Sbjct: 333 MPSKGY-----------------------------------EPDVISYTVLIYGYCKTFN 357

Query: 295 IEEALKVLNDMV-AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVT 353
           +EEA+K+ N+M+  GK+  PD  TF  ++ GL   G++ +A  L   V P       +  
Sbjct: 358 VEEAMKLYNEMLRVGKW--PDMKTFCVLLKGLFLAGKVGDAKKLFGVVKPH-AVPKNLYI 414

Query: 354 YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413
            +  L GL +   + EA E+FN +    +  D  ++  +IDGLC++ +L+ A   ++ + 
Sbjct: 415 CSVFLDGLCKNGCLFEAMELFNELKSYNMKLDIESFNCLIDGLCKARKLETAWELFEKLS 474

Query: 414 WPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKR 473
                 D   Y  MI G C++G++  A      + ++G TPN++ Y+ ++ G  K +   
Sbjct: 475 QEGLQPDVVTYCIMINGFCKNGQVDNANILFQMMEENGCTPNLLTYSALLHGFYKNNKLE 534

Query: 474 EAYQILREMRKNGLNPDAVTWRILDKL 500
           E  ++L +M +  ++  A  + I++ +
Sbjct: 535 EVVKLLHKMIQKDVSLAASIYTIVEDM 561



 Score = 38.9 bits (89), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 38/80 (47%)

Query: 427 MIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG 486
           +I  LC   ++ E +  +  ++  G  P++V Y  +I G C      EA ++   M+K G
Sbjct: 132 LINCLCNVNRVREGLSAMAGIMRRGYIPDVVTYTSLIKGLCMEHRISEATRLFIRMQKLG 191

Query: 487 LNPDAVTWRILDKLHGNRGN 506
             P+ VT+  L K     GN
Sbjct: 192 CWPNVVTYGTLIKGLCRTGN 211


>gi|326489757|dbj|BAK01859.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 746

 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 133/496 (26%), Positives = 225/496 (45%), Gaps = 47/496 (9%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +  L    R+ +A + F +M S    P+VV+Y T++HGYC  GE++ A K+ DEM   G+
Sbjct: 262 LKALLSAGRLKDACQHFDEMSS---PPDVVTYGTMVHGYCVRGELENAVKLLDEMAAKGL 318

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             N+  Y+ ++  +     V  A     ++ E M     ++++   F  ++   C +G +
Sbjct: 319 ESNATVYTSVIALLCNKGQVSDA----LRVLEDMTMH-GVALDAVVFTTVISGFCSKGDL 373

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
               R+ E+M +     +      +I+ LCR+G    A RV+  M  +GL   +V+Y  +
Sbjct: 374 AAARRLFEEMQKRGLAADRVTHTALINGLCRAGELKEADRVLQEMVDKGLDVDVVTYTVL 433

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G CK G  + A+++  E +     P+  TY  L +GLC + D+  A ++L  M     
Sbjct: 434 IDGYCKRGNMVEAFRVHNEMVGRRVAPNVVTYTALSDGLCKQGDVRAANELLHEM----- 488

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                 CN  L          EL              +V T N++ING CK G +E+A++
Sbjct: 489 ------CNKGL----------EL--------------NVYTYNSLINGLCKFGNLEQAMR 518

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           ++ +M A      D  T+TT+I  L   G    A N+L Q M  +G  P I TYN ++ G
Sbjct: 519 IMTEMEAAGH-RTDVYTYTTLIDTLCKSGEFDRAHNML-QEMLDKGIKPSIATYNVLMNG 576

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
                RVE  K++   ML   V  +  TY  ++   C    +      +  +       +
Sbjct: 577 FCMSGRVEGGKKLLEWMLEKNVRPNVVTYNSLMKQYCIDKNMKSTTEIYKGMHSQEVAPN 636

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              Y  +IKG C++  + EA++F  E+++ G+      Y+ +I    K     EA     
Sbjct: 637 ENTYNILIKGHCKARNMKEALYFHQEMIEKGLRLTASSYSALIRLLNKKKKFSEARVFFD 696

Query: 481 EMRKNGLN--PDAVTW 494
           +MR  GL   PD  ++
Sbjct: 697 KMRNEGLTAEPDVYSF 712



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 104/418 (24%), Positives = 214/418 (51%), Gaps = 13/418 (3%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   +V +A ++  DM   G   + V +TT+I G+C  G++  A ++F+EM+  G+  +
Sbjct: 332 LCNKGQVSDALRVLEDMTMHGVALDAVVFTTVISGFCSKGDLAAARRLFEEMQKRGLAAD 391

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +T++ L+ G+ R  +++ A+ ++ ++ ++      L V+   +  L+D  C+ G + E 
Sbjct: 392 RVTHTALINGLCRAGELKEADRVLQEMVDK-----GLDVDVVTYTVLIDGYCKRGNMVEA 446

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           FR+  +M   +          + D LC+ G    A+ +++ M  +GL  ++ +YNS+++G
Sbjct: 447 FRVHNEMVGRRVAPNVVTYTALSDGLCKQGDVRAANELLHEMCNKGLELNVYTYNSLING 506

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LCK G   +A +++ E    G+    +TY  L++ LC   + ++A  +LQ ML K     
Sbjct: 507 LCKFGNLEQAMRIMTEMEAAGHRTDVYTYTTLIDTLCKSGEFDRAHNMLQEMLDKGIKPS 566

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               N+ +   C+         +L +ML+   +P+V+T N+++  +C    I++ +K   
Sbjct: 567 IATYNVLMNGFCMSGRVEGGKKLLEWMLEKNVRPNVVTYNSLMKQYC----IDKNMKSTT 622

Query: 304 DMVAG---KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           ++  G   +  AP+  T+  +I G      ++EAL   +Q M ++G      +Y+A++R 
Sbjct: 623 EIYKGMHSQEVAPNENTYNILIKGHCKARNMKEAL-YFHQEMIEKGLRLTASSYSALIRL 681

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
           L + ++  EA+  F+ M   G+ A+   Y+  +D     + L+      D++V  S++
Sbjct: 682 LNKKKKFSEARVFFDKMRNEGLTAEPDVYSFYMDISFNEDNLESTITLCDELVEASHV 739



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 101/360 (28%), Positives = 170/360 (47%), Gaps = 4/360 (1%)

Query: 143 GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQ 202
           G M+   C  G    A +++  M  +GL  +   Y S++  LC  G    A ++LE+   
Sbjct: 291 GTMVHGYCVRGELENAVKLLDEMAAKGLESNATVYTSVIALLCNKGQVSDALRVLEDMTM 350

Query: 203 FGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYL-RALCLIKNPT 261
            G       +  ++ G C + DL  AR++ + M  K+ +   R+ +  L   LC      
Sbjct: 351 HGVALDAVVFTTVISGFCSKGDLAAARRLFEEM-QKRGLAADRVTHTALINGLCRAGELK 409

Query: 262 ELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTI 321
           E   VL  M+      DV+T   +I+G+CK G + EA +V N+MV G+  AP+ VT+T +
Sbjct: 410 EADRVLQEMVDKGLDVDVVTYTVLIDGYCKRGNMVEAFRVHNEMV-GRRVAPNVVTYTAL 468

Query: 322 IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG 381
             GL   G ++ A  LL++ M  +G    + TYN+++ GL +   +E+A  +   M   G
Sbjct: 469 SDGLCKQGDVRAANELLHE-MCNKGLELNVYTYNSLINGLCKFGNLEQAMRIMTEMEAAG 527

Query: 382 VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAV 441
              D  TY  +ID LC+S + D A     +++          Y  ++ G C SG++    
Sbjct: 528 HRTDVYTYTTLIDTLCKSGEFDRAHNMLQEMLDKGIKPSIATYNVLMNGFCMSGRVEGGK 587

Query: 442 HFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLH 501
             L  +++  V PN+V YN ++   C     +   +I + M    + P+  T+ IL K H
Sbjct: 588 KLLEWMLEKNVRPNVVTYNSLMKQYCIDKNMKSTTEIYKGMHSQEVAPNENTYNILIKGH 647



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 102/360 (28%), Positives = 170/360 (47%), Gaps = 7/360 (1%)

Query: 142 CGH--MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
           C H  ++ +L  +GR   A +    M      P +V+Y ++VHG C  G    A +LL+E
Sbjct: 256 CSHNILLKALLSAGRLKDACQHFDEMSS---PPDVVTYGTMVHGYCVRGELENAVKLLDE 312

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
               G   +   Y  ++  LC +  +  A +VL+ M          +    +   C   +
Sbjct: 313 MAAKGLESNATVYTSVIALLCNKGQVSDALRVLEDMTMHGVALDAVVFTTVISGFCSKGD 372

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
                 +   M +     D +T   +ING C+ G ++EA +VL +MV  K    D VT+T
Sbjct: 373 LAAARRLFEEMQKRGLAADRVTHTALINGLCRAGELKEADRVLQEMV-DKGLDVDVVTYT 431

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
            +I G    G + EA  + +  M  R  +P +VTY A+  GL +   V  A E+ + M  
Sbjct: 432 VLIDGYCKRGNMVEAFRV-HNEMVGRRVAPNVVTYTALSDGLCKQGDVRAANELLHEMCN 490

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
            G+  +  TY  +I+GLC+   L++A R   ++    +  D Y Y  +I  LC+SG+   
Sbjct: 491 KGLELNVYTYNSLINGLCKFGNLEQAMRIMTEMEAAGHRTDVYTYTTLIDTLCKSGEFDR 550

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
           A + L E++D G+ P+I  YNV+++G C         ++L  M +  + P+ VT+  L K
Sbjct: 551 AHNMLQEMLDKGIKPSIATYNVLMNGFCMSGRVEGGKKLLEWMLEKNVRPNVVTYNSLMK 610



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 97/336 (28%), Positives = 160/336 (47%), Gaps = 19/336 (5%)

Query: 165 MRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQ-FGYLPSEH--TYKVLVEGLCG 221
           +R+ GL+PS  S N+++  L            L+E I  F  LP ++  ++ +L++ L  
Sbjct: 219 LRQYGLSPSPESCNAVLSRLP-----------LDEAIALFRELPDKNVCSHNILLKALLS 267

Query: 222 ESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVIT 281
              L+ A +    M S  DV         +   C+       + +L  M     + +   
Sbjct: 268 AGRLKDACQHFDEMSSPPDV---VTYGTMVHGYCVRGELENAVKLLDEMAAKGLESNATV 324

Query: 282 LNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQV 341
             +VI   C  G++ +AL+VL DM      A DAV FTT+I G  + G +  A  L ++ 
Sbjct: 325 YTSVIALLCNKGQVSDALRVLEDMTMHGV-ALDAVVFTTVISGFCSKGDLAAARRL-FEE 382

Query: 342 MPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ 401
           M +RG +   VT+ A++ GL R   ++EA  V   M+  G+  D  TY ++IDG C+   
Sbjct: 383 MQKRGLAADRVTHTALINGLCRAGELKEADRVLQEMVDKGLDVDVVTYTVLIDGYCKRGN 442

Query: 402 LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNV 461
           + EA R  +++V      +   Y A+  GLC+ G +  A   L+E+ + G+  N+  YN 
Sbjct: 443 MVEAFRVHNEMVGRRVAPNVVTYTALSDGLCKQGDVRAANELLHEMCNKGLELNVYTYNS 502

Query: 462 VIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           +I+G CK     +A +I+ EM   G   D  T+  L
Sbjct: 503 LINGLCKFGNLEQAMRIMTEMEAAGHRTDVYTYTTL 538



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 102/212 (48%), Gaps = 9/212 (4%)

Query: 295 IEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTY 354
           ++EA+ +  ++     C     +   ++  LL+ GR+++A     Q   +    P +VTY
Sbjct: 240 LDEAIALFRELPDKNVC-----SHNILLKALLSAGRLKDAC----QHFDEMSSPPDVVTY 290

Query: 355 NAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVW 414
             ++ G      +E A ++ + M   G+ +++T Y  VI  LC   Q+ +A R  +D+  
Sbjct: 291 GTMVHGYCVRGELENAVKLLDEMAAKGLESNATVYTSVIALLCNKGQVSDALRVLEDMTM 350

Query: 415 PSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKRE 474
                D  V+  +I G C  G +  A     E+   G+  + V +  +I+G C+    +E
Sbjct: 351 HGVALDAVVFTTVISGFCSKGDLAAARRLFEEMQKRGLAADRVTHTALINGLCRAGELKE 410

Query: 475 AYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           A ++L+EM   GL+ D VT+ +L   +  RGN
Sbjct: 411 ADRVLQEMVDKGLDVDVVTYTVLIDGYCKRGN 442


>gi|115446101|ref|NP_001046830.1| Os02g0470000 [Oryza sativa Japonica Group]
 gi|47497415|dbj|BAD19472.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|47497530|dbj|BAD19582.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113536361|dbj|BAF08744.1| Os02g0470000 [Oryza sativa Japonica Group]
          Length = 649

 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 137/539 (25%), Positives = 245/539 (45%), Gaps = 74/539 (13%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C   R+ +A ++    ++ G   NVV+YT LI GYCR+G +D A ++   M    V P++
Sbjct: 135 CRDGRLADAERVLGAARATGAA-NVVTYTALIDGYCRSGRLDDALRLIASM---PVAPDT 190

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSV------NNAAFANLVDSLCREG 118
            TY+ +++G           + + K WE  +E     +      N   FA  + S C+ G
Sbjct: 191 YTYNTVLKG-----------LCIAKKWEEAEELMAEMIRNRCPPNEVTFATQIRSFCQNG 239

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
            ++   ++ + MP+     +      +I+     G    A  ++  M  +   P+ V YN
Sbjct: 240 LLDRAVQLLDQMPRYGCTPDVVIYSTLINGFSEQGHVDQALDLLNTMLCK---PNTVCYN 296

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
           + + GLC         +L+ E ++ G  P+E T+ +L+  LC  + ++ A +VL+ M   
Sbjct: 297 AALKGLCIAERWEDIGELMAEMVRKGCSPNEATFSMLISSLCQNNLVDSAVEVLEQMEKY 356

Query: 239 KDVDRTRICNIYLRALC---LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGR- 294
                T   NI + +L     + +   LLN +V      C+PD +  N V+ GFC+  R 
Sbjct: 357 GCEPDTVNYNIIINSLSERGRVDDALRLLNSMV------CKPDALGFNAVLKGFCRAERW 410

Query: 295 -----------------IEEALKVLNDMVAGK----------------FCAPDAVTFTTI 321
                            IE    +L DM+                    C PD VT++++
Sbjct: 411 HDASELIAQMFRDDCPLIEMTFNILIDMLCQNGLVNYATQVFEQMPRYRCTPDIVTYSSL 470

Query: 322 IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG 381
           + G    G ++ A+  L++ MP +   P I +YNAVL+GL R  R E+A E+   M+G  
Sbjct: 471 LNGFSEQGLVEVAIQ-LFRSMPCK---PDIFSYNAVLKGLCRAARWEDAGELIAEMVGKD 526

Query: 382 VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAV 441
              +  T+ I+I+ LC+   +D A    + +    +  D + Y A+I G    G++ +A+
Sbjct: 527 CPPNEVTFNILINSLCQKGLVDRAIEVLEQMPNYGSTPDIFTYNALINGFSEQGRLDDAL 586

Query: 442 HFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKL 500
             L  +      P+ + YN  + G C+    ++A +++ EM +N   P+ VT++  + L
Sbjct: 587 KLLSTM---SCKPDAISYNSTLKGLCRAERWQDAEELVAEMLRNKCTPNEVTFKYANHL 642



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/236 (26%), Positives = 120/236 (50%), Gaps = 9/236 (3%)

Query: 278 DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNL 337
           +V+T   +I+G+C+ GR+++AL+++  M      APD  T+ T++ GL    + +EA  L
Sbjct: 157 NVVTYTALIDGYCRSGRLDDALRLIASMPV----APDTYTYNTVLKGLCIAKKWEEAEEL 212

Query: 338 LYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLC 397
           + +++  R   P  VT+   +R   +   ++ A ++ + M   G   D   Y+ +I+G  
Sbjct: 213 MAEMIRNR-CPPNEVTFATQIRSFCQNGLLDRAVQLLDQMPRYGCTPDVVIYSTLINGFS 271

Query: 398 ESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIV 457
           E   +D+A    + ++   N      Y A +KGLC + +  +    + E+V  G +PN  
Sbjct: 272 EQGHVDQALDLLNTMLCKPN---TVCYNAALKGLCIAERWEDIGELMAEMVRKGCSPNEA 328

Query: 458 CYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN-DFGLRI 512
            ++++I   C+ ++   A ++L +M K G  PD V + I+      RG  D  LR+
Sbjct: 329 TFSMLISSLCQNNLVDSAVEVLEQMEKYGCEPDTVNYNIIINSLSERGRVDDALRL 384


>gi|222640310|gb|EEE68442.1| hypothetical protein OsJ_26820 [Oryza sativa Japonica Group]
          Length = 621

 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 140/482 (29%), Positives = 235/482 (48%), Gaps = 52/482 (10%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R  EA  L  +  S G  PN+V Y  LI GYC  GEM+ A KVF+ M      PN
Sbjct: 187 LCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPN 246

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             TY+ L+ G+ ++  VERA V    L+ RM  E  L  N   +  L+   C EG++   
Sbjct: 247 VRTYTELIHGLCKSGKVERAMV----LFSRMV-EAGLEPNVVTYTALIQGQCNEGHLQCA 301

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           FR+   M     V  ++    +ID+LC+  +   A   +  + K+G+  + V Y S++ G
Sbjct: 302 FRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDG 361

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK----K 239
           LCK G    A +L+++ I  G++P  H+Y  L++GLC +  L +A  +L+ M+ K     
Sbjct: 362 LCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQAS 421

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
            V  T I +  +R +   + P ++ +    M+ T   PD++T    +  +C+ GR+E+A 
Sbjct: 422 PVTYTIIIDELVREVG-SEGPKKIFDK---MIATGINPDIVTYTVFVRSYCEEGRMEDAE 477

Query: 300 KVLNDMV-AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
            ++  MV  G F  P+ VT+ T+I G  N+G + +A +  ++VM  +G+ P   +Y  +L
Sbjct: 478 SMIVQMVDRGVF--PNLVTYNTLIRGYANLGLVSQAFS-TFEVMVGKGWKPNEDSYTVLL 534

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
           R + +    + + +++        +AD       +  L ESN        +D+IVW    
Sbjct: 535 RLVVKKSSSDNSVDIWK-------IAD-------MKDLQESN--------YDEIVW---- 568

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI 478
                   +I GL + G + E    L  + + G  P+    N +I G  ++++  E  +I
Sbjct: 569 ------KILIYGLLQKGSVAEFSSLLSVMKEHGYQPSNTI-NAMITG--EITVTNEVQEI 619

Query: 479 LR 480
            R
Sbjct: 620 AR 621



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 127/500 (25%), Positives = 220/500 (44%), Gaps = 42/500 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C    +  A +    +   G  P+  +YT+ + GYCR G +  A +VF  M   G 
Sbjct: 79  INAYCLAGDIPAAKQHLTSLLHAGLAPDSYAYTSFVLGYCRAGMLTHACRVFVLMPLRGC 138

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           L  + TY+ L+ G+L    V  A  +   +       +  + +   +A +V  LC  G  
Sbjct: 139 LRTAFTYTALLHGLLGAGMVREAMAVFVGM-----RADSCAPDTHVYATMVHGLCEAGRT 193

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E   + E+               +ID  C +G    A +V   M     +P++ +Y  +
Sbjct: 194 EEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTEL 253

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +HGLCK G   RA  L    ++ G  P+  TY  L++G C E  L+ A ++L  M +   
Sbjct: 254 IHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMET--- 310

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                   N LV        P+  T + +I+  CK  ++EEA  
Sbjct: 311 ------------------------NGLV--------PNDWTFSVLIDALCKREKVEEAQL 338

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
            L  +V  K    + V +T++I GL   G+I +A + L Q M   G+ P   +Y++++ G
Sbjct: 339 FLGSLVK-KGVKVNEVVYTSLIDGLCKTGKI-DAADELMQKMISEGFVPDAHSYSSLIDG 396

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L R +++ +A  +   M+  G+ A   TY I+ID L      +  K+ +D ++      D
Sbjct: 397 LCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMIATGINPD 456

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              Y   ++  C  G++ +A   + ++VD GV PN+V YN +I G   L +  +A+    
Sbjct: 457 IVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYANLGLVSQAFSTFE 516

Query: 481 EMRKNGLNPDAVTWRILDKL 500
            M   G  P+  ++ +L +L
Sbjct: 517 VMVGKGWKPNEDSYTVLLRL 536



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 132/530 (24%), Positives = 219/530 (41%), Gaps = 115/530 (21%)

Query: 14  HKLFFDMKS---RGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVL 70
           H++F DM+S   R    N+ +YTTLI+ YC  G++  A +    + H G+ P+S  Y+  
Sbjct: 54  HRMFPDMESLASRMPARNLRTYTTLINAYCLAGDIPAAKQHLTSLLHAGLAPDSYAYTSF 113

Query: 71  VRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDM 130
           V G                                         CR G +    R+   M
Sbjct: 114 VLG----------------------------------------YCRAGMLTHACRVFVLM 133

Query: 131 PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGC 190
           P    +   F    ++  L  +G    A  V   MR     P    Y ++VHGLC+ G  
Sbjct: 134 PLRGCLRTAFTYTALLHGLLGAGMVREAMAVFVGMRADSCAPDTHVYATMVHGLCEAGRT 193

Query: 191 MRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIY 250
             A  LLEE +  G+ P+   Y  L++G C   ++E A KV + M    D +R       
Sbjct: 194 EEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGM----DGNR------- 242

Query: 251 LRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKF 310
                                   C P+V T   +I+G CK G++E A+ + + MV    
Sbjct: 243 ------------------------CSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGL 278

Query: 311 CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEA 370
             P+ VT+T +I G  N G +Q A  LL+ +M   G  P   T++ ++  L +  +VEEA
Sbjct: 279 -EPNVVTYTALIQGQCNEGHLQCAFRLLH-LMETNGLVPNDWTFSVLIDALCKREKVEEA 336

Query: 371 KEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKG 430
           +     ++  GV  +   Y  +IDGLC++ ++D A      ++    + D + Y+++I G
Sbjct: 337 QLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDG 396

Query: 431 LCRSGKIHEAVHFLYELVD-----------------------------------SGVTPN 455
           LCR  K+ +A   L ++++                                   +G+ P+
Sbjct: 397 LCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMIATGINPD 456

Query: 456 IVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
           IV Y V +   C+     +A  ++ +M   G+ P+ VT+  L + + N G
Sbjct: 457 IVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYANLG 506



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 141/293 (48%), Gaps = 13/293 (4%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   +V EA      +  +G   N V YT+LI G C+TG++D A ++  +M   G 
Sbjct: 324 IDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGF 383

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P++ +YS L+ G+ R + + +A +++  + E+      +  +   +  ++D L RE   
Sbjct: 384 VPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEK-----GIQASPVTYTIIIDELVREVGS 438

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHM-IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
               +I + M     +N +     + + S C  GR   A  ++  M  RG+ P+LV+YN+
Sbjct: 439 EGPKKIFDKM-IATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNT 497

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++ G    G   +A+   E  +  G+ P+E +Y VL+  +  +S  + +  + + +   K
Sbjct: 498 LIRGYANLGLVSQAFSTFEVMVGKGWKPNEDSYTVLLRLVVKKSSSDNSVDIWK-IADMK 556

Query: 240 DVDRTR----ICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVING 288
           D+  +     +  I +  L    +  E  ++L  M +   QP   T+N +I G
Sbjct: 557 DLQESNYDEIVWKILIYGLLQKGSVAEFSSLLSVMKEHGYQPSN-TINAMITG 608



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 107/226 (47%), Gaps = 2/226 (0%)

Query: 281 TLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQ 340
           T  T+IN +C  G I  A + L  ++     APD+  +T+ + G    G +  A  + + 
Sbjct: 74  TYTTLINAYCLAGDIPAAKQHLTSLLHAGL-APDSYAYTSFVLGYCRAGMLTHACRV-FV 131

Query: 341 VMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN 400
           +MP RG      TY A+L GL     V EA  VF  M       D+  YA ++ GLCE+ 
Sbjct: 132 LMPLRGCLRTAFTYTALLHGLLGAGMVREAMAVFVGMRADSCAPDTHVYATMVHGLCEAG 191

Query: 401 QLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYN 460
           + +EA+   ++ +      +  VY A+I G C +G++  A+     +  +  +PN+  Y 
Sbjct: 192 RTEEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYT 251

Query: 461 VVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
            +I G CK      A  +   M + GL P+ VT+  L +   N G+
Sbjct: 252 ELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGH 297


>gi|15239874|ref|NP_196771.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171712|sp|Q9FMQ1.1|PP376_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g12100, mitochondrial; Flags: Precursor
 gi|9759377|dbj|BAB10028.1| unnamed protein product [Arabidopsis thaliana]
 gi|28973713|gb|AAO64173.1| unknown protein [Arabidopsis thaliana]
 gi|29824237|gb|AAP04079.1| unknown protein [Arabidopsis thaliana]
 gi|110737169|dbj|BAF00534.1| hypothetical protein [Arabidopsis thaliana]
 gi|332004380|gb|AED91763.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 816

 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 124/497 (24%), Positives = 229/497 (46%), Gaps = 7/497 (1%)

Query: 10  VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSV 69
           + EA  LFF +++ G  P+  S T L+    +T +  V   VF  +      P+   Y  
Sbjct: 125 ISEAADLFFALRNEGIYPSSDSLTLLLDHLVKTKQFRVTINVFLNILESDFRPSKFMYGK 184

Query: 70  LVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAED 129
            ++  ++  DV +      +L+ RMK +  +  +   +  L+D LC+   +N+  ++ ++
Sbjct: 185 AIQAAVKLSDVGKG----LELFNRMKHDR-IYPSVFIYNVLIDGLCKGKRMNDAEQLFDE 239

Query: 130 MPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG 189
           M   + +        +ID  C++G    + +V   M+   + PSL+++N+++ GL K G 
Sbjct: 240 MLARRLLPSLITYNTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLKGLFKAGM 299

Query: 190 CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNI 249
              A  +L+E    G++P   T+ +L +G       E A  V +  +          C+I
Sbjct: 300 VEDAENVLKEMKDLGFVPDAFTFSILFDGYSSNEKAEAALGVYETAVDSGVKMNAYTCSI 359

Query: 250 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK 309
            L ALC      +   +L   +     P+ +  NT+I+G+C+ G +  A   +  M   +
Sbjct: 360 LLNALCKEGKIEKAEEILGREMAKGLVPNEVIYNTMIDGYCRKGDLVGARMKIEAM-EKQ 418

Query: 310 FCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEE 369
              PD + +  +I     +G ++ A   + + M  +G SP + TYN ++ G  R    ++
Sbjct: 419 GMKPDHLAYNCLIRRFCELGEMENAEKEVNK-MKLKGVSPSVETYNILIGGYGRKYEFDK 477

Query: 370 AKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIK 429
             ++   M   G + +  +Y  +I+ LC+ ++L EA+    D+          +Y  +I 
Sbjct: 478 CFDILKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPKVRIYNMLID 537

Query: 430 GLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNP 489
           G C  GKI +A  F  E++  G+  N+V YN +IDG        EA  +L E+ + GL P
Sbjct: 538 GCCSKGKIEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKGLKP 597

Query: 490 DAVTWRILDKLHGNRGN 506
           D  T+  L   +G  GN
Sbjct: 598 DVFTYNSLISGYGFAGN 614



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 133/532 (25%), Positives = 249/532 (46%), Gaps = 38/532 (7%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   R+ +A +LF +M +R  +P++++Y TLI GYC+ G  + ++KV + M+   +
Sbjct: 221 IDGLCKGKRMNDAEQLFDEMLARRLLPSLITYNTLIDGYCKAGNPEKSFKVRERMKADHI 280

Query: 61  LPNSLTYSVLVRGVLRTRDVERA-NVL-----------------MFKLWERMKEEE---- 98
            P+ +T++ L++G+ +   VE A NVL                 +F  +   ++ E    
Sbjct: 281 EPSLITFNTLLKGLFKAGMVEDAENVLKEMKDLGFVPDAFTFSILFDGYSSNEKAEAALG 340

Query: 99  --DLSVNNAAFAN------LVDSLCREGYVNEVFRI-AEDMPQGKSVNEEFACGHMIDSL 149
             + +V++    N      L+++LC+EG + +   I   +M +G   NE      MID  
Sbjct: 341 VYETAVDSGVKMNAYTCSILLNALCKEGKIEKAEEILGREMAKGLVPNE-VIYNTMIDGY 399

Query: 150 CRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSE 209
           CR G   GA   +  M K+G+ P  ++YN ++   C+ G    A + + +    G  PS 
Sbjct: 400 CRKGDLVGARMKIEAMEKQGMKPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSV 459

Query: 210 HTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVF 269
            TY +L+ G   + + +K   +L+ M     +         +  LC      E   V   
Sbjct: 460 ETYNILIGGYGRKYEFDKCFDILKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRD 519

Query: 270 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG 329
           M      P V   N +I+G C  G+IE+A +   +M+  K    + VT+ T+I GL   G
Sbjct: 520 MEDRGVSPKVRIYNMLIDGCCSKGKIEDAFRFSKEMLK-KGIELNLVTYNTLIDGLSMTG 578

Query: 330 RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTY 389
           ++ EA +LL ++  ++G  P + TYN+++ G      V+    ++  M   G+     TY
Sbjct: 579 KLSEAEDLLLEI-SRKGLKPDVFTYNSLISGYGFAGNVQRCIALYEEMKRSGIKPTLKTY 637

Query: 390 AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449
            ++I  LC    ++  +R + ++    ++    VY  ++      G + +A +   ++++
Sbjct: 638 HLLI-SLCTKEGIELTERLFGEMSLKPDL---LVYNGVLHCYAVHGDMEKAFNLQKQMIE 693

Query: 450 SGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLH 501
             +  +   YN +I G  K+    E   ++ EM    + P+A T+ I+ K H
Sbjct: 694 KSIGLDKTTYNSLILGQLKVGKLCEVRSLIDEMNAREMEPEADTYNIIVKGH 745



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 126/506 (24%), Positives = 226/506 (44%), Gaps = 42/506 (8%)

Query: 7   LSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLT 66
           LS VG+  +LF  MK     P+V  Y  LI G C+   M+ A ++FDEM    +LP+ +T
Sbjct: 192 LSDVGKGLELFNRMKHDRIYPSVFIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLPSLIT 251

Query: 67  YSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRI 126
           Y+ L+ G  +  + E++    FK+ ERMK +  +  +   F  L+  L + G V +   +
Sbjct: 252 YNTLIDGYCKAGNPEKS----FKVRERMKADH-IEPSLITFNTLLKGLFKAGMVEDAENV 306

Query: 127 AEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK 186
            ++M     V + F    + D    + +   A  V       G+  +  + + +++ LCK
Sbjct: 307 LKEMKDLGFVPDAFTFSILFDGYSSNEKAEAALGVYETAVDSGVKMNAYTCSILLNALCK 366

Query: 187 HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRI 246
            G   +A ++L   +  G +P+E  Y  +++G C + DL  AR  ++             
Sbjct: 367 EGKIEKAEEILGREMAKGLVPNEVIYNTMIDGYCRKGDLVGARMKIE------------- 413

Query: 247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV 306
                                  M +   +PD +  N +I  FC++G +E A K +N M 
Sbjct: 414 ----------------------AMEKQGMKPDHLAYNCLIRRFCELGEMENAEKEVNKMK 451

Query: 307 AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 366
             K  +P   T+  +I G        +  ++L + M   G  P +V+Y  ++  L +  +
Sbjct: 452 L-KGVSPSVETYNILIGGYGRKYEFDKCFDILKE-MEDNGTMPNVVSYGTLINCLCKGSK 509

Query: 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAA 426
           + EA+ V   M   GV      Y ++IDG C   ++++A RF  +++      +   Y  
Sbjct: 510 LLEAQIVKRDMEDRGVSPKVRIYNMLIDGCCSKGKIEDAFRFSKEMLKKGIELNLVTYNT 569

Query: 427 MIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG 486
           +I GL  +GK+ EA   L E+   G+ P++  YN +I G       +    +  EM+++G
Sbjct: 570 LIDGLSMTGKLSEAEDLLLEISRKGLKPDVFTYNSLISGYGFAGNVQRCIALYEEMKRSG 629

Query: 487 LNPDAVTWRILDKLHGNRGNDFGLRI 512
           + P   T+ +L  L    G +   R+
Sbjct: 630 IKPTLKTYHLLISLCTKEGIELTERL 655



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 101/235 (42%), Gaps = 9/235 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D L    ++ EA  L  ++  +G  P+V +Y +LI GY   G +     +++EM+  G+
Sbjct: 571 IDGLSMTGKLSEAEDLLLEISRKGLKPDVFTYNSLISGYGFAGNVQRCIALYEEMKRSGI 630

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P   TY +L+   L T++         +L ER+  E  L  +   +  ++      G +
Sbjct: 631 KPTLKTYHLLIS--LCTKE-------GIELTERLFGEMSLKPDLLVYNGVLHCYAVHGDM 681

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            + F + + M +     ++     +I    + G+      ++  M  R + P   +YN I
Sbjct: 682 EKAFNLQKQMIEKSIGLDKTTYNSLILGQLKVGKLCEVRSLIDEMNAREMEPEADTYNII 741

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM 235
           V G C+    M AY    E  + G+L        LV GL  E   ++A  V+  M
Sbjct: 742 VKGHCEVKDYMSAYVWYREMQEKGFLLDVCIGNELVSGLKEEWRSKEAEIVISEM 796


>gi|334183628|ref|NP_001185309.1| tetratricopeptide repeat-like protein [Arabidopsis thaliana]
 gi|193806276|sp|P0C7R3.1|PP106_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g64583, mitochondrial; Flags: Precursor
 gi|332196135|gb|AEE34256.1| tetratricopeptide repeat-like protein [Arabidopsis thaliana]
          Length = 512

 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 122/454 (26%), Positives = 222/454 (48%), Gaps = 15/454 (3%)

Query: 38  GYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEE 97
           G+  +   + A+ +F EM H   LP+ + ++ L+     T ++ R   +++  + +  E 
Sbjct: 45  GFLHSIRFEDAFALFFEMVHSQPLPSIVDFTRLLTA---TANLRRYETVIY--FSQKMEL 99

Query: 98  EDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHG 157
             +S +  +F  L+   CR   ++    +   M +          G ++   C   R   
Sbjct: 100 YGISHDLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGD 159

Query: 158 ASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVE 217
           A  +V +M K G  P++V YN+++ GLCK+G    A +LL E  + G      TY  L+ 
Sbjct: 160 AFSLVILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLT 219

Query: 218 GLCGESDLEKARKVLQFMLSKKD----VDRTRICNIYLRALCLIKNPTELLNVLVFMLQT 273
           GLC       A ++L+ M+ +      V  T + +++++      N  E   +   M+Q+
Sbjct: 220 GLCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQ----GNLDEAQELYKEMIQS 275

Query: 274 QCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQE 333
              P+ +T N++ING C  GR+ +A K   D++A K C P+ VT+ T+I G      + E
Sbjct: 276 SVDPNNVTYNSIINGLCMHGRLYDAKKTF-DLMASKGCFPNVVTYNTLISGFCKFRMVDE 334

Query: 334 ALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVI 393
            + L +Q M   G++  I TYN ++ G  ++ ++  A ++F  M+   V  D  T+ I++
Sbjct: 335 GMKL-FQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILL 393

Query: 394 DGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVT 453
            GLC + +++ A   +DD+           Y  MI GLC++ K+ +A      L   GV 
Sbjct: 394 HGLCVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGVK 453

Query: 454 PNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
           P+   Y ++I G CK   +REA +++R M++ G+
Sbjct: 454 PDARTYTIMILGLCKNGPRREADELIRRMKEEGI 487



 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 114/390 (29%), Positives = 185/390 (47%), Gaps = 15/390 (3%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRG---VLR 76
           M+  G   ++ S+T LIH +CR   +  A  V  +M   G  P+ +T+  L+ G   V R
Sbjct: 97  MELYGISHDLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNR 156

Query: 77  TRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSV 136
             D     +LM K             N   +  L+D LC+ G +N    +  +M +    
Sbjct: 157 IGDAFSLVILMVK--------SGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLG 208

Query: 137 NEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQL 196
            +      ++  LC SGR   A+R++  M KR + P +V++ +++    K G    A +L
Sbjct: 209 ADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQEL 268

Query: 197 LEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCL 256
            +E IQ    P+  TY  ++ GLC    L  A+K    M SK         N  +   C 
Sbjct: 269 YKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCK 328

Query: 257 IKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAV 316
            +   E + +   M       D+ T NT+I+G+C++G++  AL +   MV+ +   PD +
Sbjct: 329 FRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRR-VTPDII 387

Query: 317 TFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNC 376
           T   ++ GL   G I+ AL + +  M +     GIV YN ++ GL +  +VE+A E+F C
Sbjct: 388 THCILLHGLCVNGEIESAL-VKFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELF-C 445

Query: 377 MLGI-GVVADSTTYAIVIDGLCESNQLDEA 405
            L + GV  D+ TY I+I GLC++    EA
Sbjct: 446 RLPVEGVKPDARTYTIMILGLCKNGPRREA 475



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 90/343 (26%), Positives = 168/343 (48%), Gaps = 22/343 (6%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C ++R+G+A  L   M   G+ PNVV Y TLI G C+ GE+++A ++ +EM   G+  +
Sbjct: 151 FCLVNRIGDAFSLVILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGAD 210

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY+ L+ G+  +     A  ++  + +R      ++ +   F  L+D   ++G ++E 
Sbjct: 211 VVTYNTLLTGLCYSGRWSDAARMLRDMMKR-----SINPDVVTFTALIDVFVKQGNLDEA 265

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             + ++M Q            +I+ LC  GR + A +   +M  +G  P++V+YN+++ G
Sbjct: 266 QELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISG 325

Query: 184 LCKHGGCMRAYQLLEEGIQF-------GYLPSEHTYKVLVEGLCGESDLEKARKVLQFML 236
            CK       +++++EG++        G+     TY  L+ G C    L  A  +  +M+
Sbjct: 326 FCK-------FRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMV 378

Query: 237 SKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIE 296
           S++         I L  LC+       L     M +++    ++  N +I+G CK  ++E
Sbjct: 379 SRRVTPDIITHCILLHGLCVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGLCKADKVE 438

Query: 297 EALKVLNDM-VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLL 338
           +A ++   + V G    PDA T+T +I GL   G  +EA  L+
Sbjct: 439 KAWELFCRLPVEG--VKPDARTYTIMILGLCKNGPRREADELI 479



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/255 (29%), Positives = 129/255 (50%), Gaps = 4/255 (1%)

Query: 248 NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA 307
            I +   C     +  L+VL  M++   +P ++T  ++++GFC + RI +A  ++  MV 
Sbjct: 110 TILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVK 169

Query: 308 GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRV 367
             +  P+ V + T+I GL   G +  AL LL + M ++G    +VTYN +L GL    R 
Sbjct: 170 SGY-EPNVVVYNTLIDGLCKNGELNIALELLNE-MEKKGLGADVVTYNTLLTGLCYSGRW 227

Query: 368 EEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAM 427
            +A  +   M+   +  D  T+  +ID   +   LDEA+  + +++  S   +N  Y ++
Sbjct: 228 SDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSI 287

Query: 428 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
           I GLC  G++++A      +   G  PN+V YN +I G CK  M  E  ++ + M   G 
Sbjct: 288 INGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGF 347

Query: 488 NPDAVTWRILDKLHG 502
           N D  T+  L  +HG
Sbjct: 348 NADIFTYNTL--IHG 360



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 104/220 (47%), Gaps = 2/220 (0%)

Query: 287 NGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
            GF    R E+A  +  +MV  +   P  V FT ++    N+ R  E +    Q M   G
Sbjct: 44  TGFLHSIRFEDAFALFFEMVHSQ-PLPSIVDFTRLLTATANLRR-YETVIYFSQKMELYG 101

Query: 347 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
            S  + ++  ++    R  R+  A  V   M+ +G      T+  ++ G C  N++ +A 
Sbjct: 102 ISHDLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAF 161

Query: 407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466
                +V      +  VY  +I GLC++G+++ A+  L E+   G+  ++V YN ++ G 
Sbjct: 162 SLVILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGL 221

Query: 467 CKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           C      +A ++LR+M K  +NPD VT+  L  +   +GN
Sbjct: 222 CYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGN 261



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 94/205 (45%), Gaps = 9/205 (4%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   R+ +A K F  M S+G  PNVV+Y TLI G+C+   +D   K+F  M   G 
Sbjct: 288 INGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGF 347

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             +  TY+ L+ G  +   + R  + +F      +   D+  +      L+  LC  G +
Sbjct: 348 NADIFTYNTLIHGYCQVGKL-RVALDIFCWMVSRRVTPDIITH----CILLHGLCVNGEI 402

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                  +DM + +      A   MI  LC++ +   A  +   +   G+ P   +Y  +
Sbjct: 403 ESALVKFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGVKPDARTYTIM 462

Query: 181 VHGLCKHGGCMRAYQLL----EEGI 201
           + GLCK+G    A +L+    EEGI
Sbjct: 463 ILGLCKNGPRREADELIRRMKEEGI 487


>gi|356533985|ref|XP_003535538.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like, partial [Glycine max]
          Length = 594

 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 123/453 (27%), Positives = 211/453 (46%), Gaps = 18/453 (3%)

Query: 28  NVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLM 87
           +V +Y TL+ G C  G++D A +V DEM    ++P+ +TY+ L+ G  + R         
Sbjct: 136 DVWTYNTLVKGLCDEGKIDEAIRVRDEMESLKLIPDVVTYNTLIDGCFKWRGSTEG---- 191

Query: 88  FKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMID 147
           F+L E MK    +  N      +V    +EG +NE       M +     + F    MI+
Sbjct: 192 FRLLEEMKSRGGVEPNAVTHNIMVKWFGKEGKINEASDAVVKMVESGVSPDCFTYNTMIN 251

Query: 148 SLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLP 207
             C++G+   A R++  M ++GL P + + N+++H LC       AY+L  +  + GY+ 
Sbjct: 252 GFCKAGKLGEAFRMMDEMARKGLKPDICTLNTMLHTLCMEKKPEEAYELTVKARKRGYIL 311

Query: 208 SEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVL 267
            E TY  L+ G       +KA K+ + M  +  V      N  +R LCL     + ++ L
Sbjct: 312 DEVTYGTLIMGYFKGKQEDKALKLWEEMKKRGIVPSVVSYNPLIRGLCLSGKTDQAVDKL 371

Query: 268 VFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLN 327
             +L+    PD ++ N +I+G+C  G +++A +  N MV   F  PD  T   ++ GL  
Sbjct: 372 NELLEKGLVPDEVSCNIIIHGYCWEGMVDKAFQFHNKMVGNSF-KPDIFTRNILLRGLCR 430

Query: 328 VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADST 387
           V  +++A  L    + ++  S  +VTYN ++  L +  R++EA ++   M       D  
Sbjct: 431 VDMLEKAFKLFNSWISKQN-SVDVVTYNTMISYLCKEGRLDEAFDLMTDMEVKKFEPDQY 489

Query: 388 TYAIVIDGLCESNQLDEAKRFWDDIVWPSN---IHD---------NYVYAAMIKGLCRSG 435
           TY  ++  L  + + +EA++F   +         HD         + +Y+  I  LC  G
Sbjct: 490 TYNAIVRALTHAGRTEEAEKFMSKLSETGQAVKTHDTSQELDASSDIMYSQQISDLCTQG 549

Query: 436 KIHEAVHFLYELVDSGVTPNIVCYNVVIDGACK 468
           K  EA+    E    GV+ N   Y  ++DG  K
Sbjct: 550 KYKEAMKLFQESEQKGVSLNKYTYIKLMDGFLK 582



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 92/351 (26%), Positives = 165/351 (47%), Gaps = 3/351 (0%)

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE-GIQF 203
           ++  LC  G+   A RV   M    L P +V+YN+++ G  K  G    ++LLEE   + 
Sbjct: 143 LVKGLCDEGKIDEAIRVRDEMESLKLIPDVVTYNTLIDGCFKWRGSTEGFRLLEEMKSRG 202

Query: 204 GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTEL 263
           G  P+  T+ ++V+    E  + +A   +  M+           N  +   C      E 
Sbjct: 203 GVEPNAVTHNIMVKWFGKEGKINEASDAVVKMVESGVSPDCFTYNTMINGFCKAGKLGEA 262

Query: 264 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF 323
             ++  M +   +PD+ TLNT+++  C   + EEA ++        +   D VT+ T+I 
Sbjct: 263 FRMMDEMARKGLKPDICTLNTMLHTLCMEKKPEEAYELTVKARKRGYIL-DEVTYGTLIM 321

Query: 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 383
           G     +  +AL L ++ M +RG  P +V+YN ++RGL    + ++A +  N +L  G+V
Sbjct: 322 GYFKGKQEDKALKL-WEEMKKRGIVPSVVSYNPLIRGLCLSGKTDQAVDKLNELLEKGLV 380

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
            D  +  I+I G C    +D+A +F + +V  S   D +    +++GLCR   + +A   
Sbjct: 381 PDEVSCNIIIHGYCWEGMVDKAFQFHNKMVGNSFKPDIFTRNILLRGLCRVDMLEKAFKL 440

Query: 444 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
               +    + ++V YN +I   CK     EA+ ++ +M      PD  T+
Sbjct: 441 FNSWISKQNSVDVVTYNTMISYLCKEGRLDEAFDLMTDMEVKKFEPDQYTY 491



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 99/399 (24%), Positives = 173/399 (43%), Gaps = 52/399 (13%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           ++ EA      M   G  P+  +Y T+I+G+C+ G++  A+++ DEM   G+ P+  T +
Sbjct: 223 KINEASDAVVKMVESGVSPDCFTYNTMINGFCKAGKLGEAFRMMDEMARKGLKPDICTLN 282

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
            ++  +   +  E A  L  K  +R                        GY         
Sbjct: 283 TMLHTLCMEKKPEEAYELTVKARKR------------------------GY--------- 309

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
                  + +E   G +I    +  +   A ++   M+KRG+ PS+VSYN ++ GLC  G
Sbjct: 310 -------ILDEVTYGTLIMGYFKGKQEDKALKLWEEMKKRGIVPSVVSYNPLIRGLCLSG 362

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
              +A   L E ++ G +P E +  +++ G C E  ++KA +    M+           N
Sbjct: 363 KTDQAVDKLNELLEKGLVPDEVSCNIIIHGYCWEGMVDKAFQFHNKMVGNSFKPDIFTRN 422

Query: 249 IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 308
           I LR LC +    +   +    +  Q   DV+T NT+I+  CK GR++EA  ++ DM   
Sbjct: 423 ILLRGLCRVDMLEKAFKLFNSWISKQNSVDVVTYNTMISYLCKEGRLDEAFDLMTDMEVK 482

Query: 309 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQV-----------MPQRGYSPGIVTYNAV 357
           KF  PD  T+  I+  L + GR +EA   + ++             Q   +   + Y+  
Sbjct: 483 KF-EPDQYTYNAIVRALTHAGRTEEAEKFMSKLSETGQAVKTHDTSQELDASSDIMYSQQ 541

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 396
           +  L    + +EA ++F      GV  +  TY  ++DG 
Sbjct: 542 ISDLCTQGKYKEAMKLFQESEQKGVSLNKYTYIKLMDGF 580



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 94/387 (24%), Positives = 179/387 (46%), Gaps = 3/387 (0%)

Query: 101 SVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASR 160
           S++   +  LV  LC EG ++E  R+ ++M   K + +      +ID   +   +    R
Sbjct: 134 SIDVWTYNTLVKGLCDEGKIDEAIRVRDEMESLKLIPDVVTYNTLIDGCFKWRGSTEGFR 193

Query: 161 VVYVMRKRG-LTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGL 219
           ++  M+ RG + P+ V++N +V    K G    A   + + ++ G  P   TY  ++ G 
Sbjct: 194 LLEEMKSRGGVEPNAVTHNIMVKWFGKEGKINEASDAVVKMVESGVSPDCFTYNTMINGF 253

Query: 220 CGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDV 279
           C    L +A +++  M  K         N  L  LC+ K P E   + V   +     D 
Sbjct: 254 CKAGKLGEAFRMMDEMARKGLKPDICTLNTMLHTLCMEKKPEEAYELTVKARKRGYILDE 313

Query: 280 ITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLY 339
           +T  T+I G+ K  + ++ALK+  +M   +   P  V++  +I GL   G+  +A++ L 
Sbjct: 314 VTYGTLIMGYFKGKQEDKALKLWEEM-KKRGIVPSVVSYNPLIRGLCLSGKTDQAVDKLN 372

Query: 340 QVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCES 399
           +++ ++G  P  V+ N ++ G      V++A +  N M+G     D  T  I++ GLC  
Sbjct: 373 ELL-EKGLVPDEVSCNIIIHGYCWEGMVDKAFQFHNKMVGNSFKPDIFTRNILLRGLCRV 431

Query: 400 NQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCY 459
           + L++A + ++  +   N  D   Y  MI  LC+ G++ EA   + ++      P+   Y
Sbjct: 432 DMLEKAFKLFNSWISKQNSVDVVTYNTMISYLCKEGRLDEAFDLMTDMEVKKFEPDQYTY 491

Query: 460 NVVIDGACKLSMKREAYQILREMRKNG 486
           N ++          EA + + ++ + G
Sbjct: 492 NAIVRALTHAGRTEEAEKFMSKLSETG 518



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 115/229 (50%), Gaps = 5/229 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   +  EA++L    + RG++ + V+Y TLI GY +  + D A K+++EM+  G++P+
Sbjct: 288 LCMEKKPEEAYELTVKARKRGYILDEVTYGTLIMGYFKGKQEDKALKLWEEMKKRGIVPS 347

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            ++Y+ L+RG+  +   ++A   + +L E+    +++S N      ++   C EG V++ 
Sbjct: 348 VVSYNPLIRGLCLSGKTDQAVDKLNELLEKGLVPDEVSCN-----IIIHGYCWEGMVDKA 402

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           F+    M       + F    ++  LCR      A ++      +  +  +V+YN+++  
Sbjct: 403 FQFHNKMVGNSFKPDIFTRNILLRGLCRVDMLEKAFKLFNSWISKQNSVDVVTYNTMISY 462

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVL 232
           LCK G    A+ L+ +     + P ++TY  +V  L      E+A K +
Sbjct: 463 LCKEGRLDEAFDLMTDMEVKKFEPDQYTYNAIVRALTHAGRTEEAEKFM 511



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 69/144 (47%), Gaps = 10/144 (6%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC +  + +A KLF    S+ +  +VV+Y T+I   C+ G +D A+ +  +M      P+
Sbjct: 428 LCRVDMLEKAFKLFNSWISKQNSVDVVTYNTMISYLCKEGRLDEAFDLMTDMEVKKFEPD 487

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWER--------MKEEEDLSVNNAAFANLVDSLC 115
             TY+ +VR +      E A   M KL E           +E D S ++  ++  +  LC
Sbjct: 488 QYTYNAIVRALTHAGRTEEAEKFMSKLSETGQAVKTHDTSQELDAS-SDIMYSQQISDLC 546

Query: 116 REGYVNEVFRIAEDMPQ-GKSVNE 138
            +G   E  ++ ++  Q G S+N+
Sbjct: 547 TQGKYKEAMKLFQESEQKGVSLNK 570


>gi|302809819|ref|XP_002986602.1| hypothetical protein SELMODRAFT_124189 [Selaginella moellendorffii]
 gi|300145785|gb|EFJ12459.1| hypothetical protein SELMODRAFT_124189 [Selaginella moellendorffii]
          Length = 445

 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 117/456 (25%), Positives = 216/456 (47%), Gaps = 49/456 (10%)

Query: 31  SYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLT--YSVLVRGVLRTRDVERANVLMF 88
           +Y TL+HG+C  GE D A ++ +E +  G+ P SL   ++++++G      V+ A   + 
Sbjct: 16  TYGTLVHGHCLAGEFDEAKRLVEEFKDTGMSPGSLVVLHNLMLKGFSEAGFVDEAKSHLH 75

Query: 89  KLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDS 148
           ++        D   N+ ++  L                                   ID+
Sbjct: 76  RM--------DCKPNSVSYNTL-----------------------------------IDA 92

Query: 149 LCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPS 208
           LC SGR   A   +  M KRG+ P+ V+YN++  GL K G    A++L+      G+  +
Sbjct: 93  LCSSGRIQEAREELQAMAKRGVAPNRVTYNAMATGLGKAGLLDEAFELMGVMESAGFALT 152

Query: 209 EHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLV 268
             T+  +VE LC     ++A KV++ ML +         N+ L A C    P E L +  
Sbjct: 153 AVTFNPVVEFLCKSGRPDEACKVMETMLLRNIEPNILTLNLILHAFCKAARPEEALGMTD 212

Query: 269 FMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNV 328
            M++    P ++T N ++  FC   +++ A K+L  M   K C P+ VT++ ++     +
Sbjct: 213 IMVEMGFCPTIVTFNALLELFCNTDQMDSAAKLLETMAHSK-CKPNFVTYSIMVQKFAEM 271

Query: 329 GRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTT 388
           GR+ EA   L Q++   GY+P ++  NA + GL +   ++ A      M   G  A++ T
Sbjct: 272 GRMVEARAFLEQLVVC-GYAPNLLVCNAYVAGLCKTGEMDLASRFLTVMAEEGCRANTAT 330

Query: 389 YAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELV 448
           Y  +++G C+  ++DEA+R  ++++   ++ D+  Y+ +I+GLC +G+I  A   + ++ 
Sbjct: 331 YNSLVEGFCKLGRMDEAERVLEEMIAEGSLPDSTTYSVLIQGLCSAGQIEHAFMVMLQVT 390

Query: 449 DS--GVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
            +     P+   +  +I+  C+L     A  +L  M
Sbjct: 391 RAVESARPDPATFVKLIEKLCELGEMDRAALVLERM 426



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 100/368 (27%), Positives = 173/368 (47%), Gaps = 9/368 (2%)

Query: 133 GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPS--LVSYNSIVHGLCKHGGC 190
           G+ V+ EF  G ++   C +G    A R+V   +  G++P   +V +N ++ G  + G  
Sbjct: 8   GEFVHSEFTYGTLVHGHCLAGEFDEAKRLVEEFKDTGMSPGSLVVLHNLMLKGFSEAGFV 67

Query: 191 MRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC-NI 249
             A   L    +    P+  +Y  L++ LC    +++AR+ LQ M +K+ V   R+  N 
Sbjct: 68  DEAKSHLH---RMDCKPNSVSYNTLIDALCSSGRIQEAREELQAM-AKRGVAPNRVTYNA 123

Query: 250 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK 309
               L       E   ++  M         +T N V+   CK GR +EA KV+  M+   
Sbjct: 124 MATGLGKAGLLDEAFELMGVMESAGFALTAVTFNPVVEFLCKSGRPDEACKVMETMLLRN 183

Query: 310 FCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEE 369
              P+ +T   I+       R +EAL +   +M + G+ P IVT+NA+L       +++ 
Sbjct: 184 I-EPNILTLNLILHAFCKAARPEEALGM-TDIMVEMGFCPTIVTFNALLELFCNTDQMDS 241

Query: 370 AKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIK 429
           A ++   M       +  TY+I++    E  ++ EA+ F + +V      +  V  A + 
Sbjct: 242 AAKLLETMAHSKCKPNFVTYSIMVQKFAEMGRMVEARAFLEQLVVCGYAPNLLVCNAYVA 301

Query: 430 GLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNP 489
           GLC++G++  A  FL  + + G   N   YN +++G CKL    EA ++L EM   G  P
Sbjct: 302 GLCKTGEMDLASRFLTVMAEEGCRANTATYNSLVEGFCKLGRMDEAERVLEEMIAEGSLP 361

Query: 490 DAVTWRIL 497
           D+ T+ +L
Sbjct: 362 DSTTYSVL 369



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 97/379 (25%), Positives = 171/379 (45%), Gaps = 40/379 (10%)

Query: 27  PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVL 86
           PN VSY TLI   C +G +  A +    M   GV PN +TY+ +  G+ +   ++ A   
Sbjct: 81  PNSVSYNTLIDALCSSGRIQEAREELQAMAKRGVAPNRVTYNAMATGLGKAGLLDEA--- 137

Query: 87  MFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMI 146
            F+L   M E    ++    F  +V+ LC+ G  +E  ++ E M              ++
Sbjct: 138 -FELMGVM-ESAGFALTAVTFNPVVEFLCKSGRPDEACKVMETMLLRNIEPNILTLNLIL 195

Query: 147 DSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL 206
            + C++ R   A  +  +M + G  P++V++N+++   C       A +LLE        
Sbjct: 196 HAFCKAARPEEALGMTDIMVEMGFCPTIVTFNALLELFCNTDQMDSAAKLLETMAHSKCK 255

Query: 207 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 266
           P+  TY ++V+       + +AR  L+ ++         +CN Y+  LC           
Sbjct: 256 PNFVTYSIMVQKFAEMGRMVEARAFLEQLVVCGYAPNLLVCNAYVAGLCKTGEMDLASRF 315

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
           L  M +  C+ +  T N+++ GFCK+GR++EA +VL +M+A +   PD+ T++ +I GL 
Sbjct: 316 LTVMAEEGCRANTATYNSLVEGFCKLGRMDEAERVLEEMIA-EGSLPDSTTYSVLIQGLC 374

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
           + G+I+ A  ++ QV                       R VE A+             D 
Sbjct: 375 SAGQIEHAFMVMLQVT----------------------RAVESAR------------PDP 400

Query: 387 TTYAIVIDGLCESNQLDEA 405
            T+  +I+ LCE  ++D A
Sbjct: 401 ATFVKLIEKLCELGEMDRA 419



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 78/335 (23%), Positives = 143/335 (42%), Gaps = 6/335 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   R+ EA +    M  RG  PN V+Y  +  G  + G +D A+++   M   G 
Sbjct: 90  IDALCSSGRIQEAREELQAMAKRGVAPNRVTYNAMATGLGKAGLLDEAFELMGVMESAGF 149

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
              ++T++ +V  + ++   + A  +M  +  R  E   L++N      ++ + C+    
Sbjct: 150 ALTAVTFNPVVEFLCKSGRPDEACKVMETMLLRNIEPNILTLN-----LILHAFCKAARP 204

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E   + + M +            +++  C + +   A++++  M      P+ V+Y+ +
Sbjct: 205 EEALGMTDIMVEMGFCPTIVTFNALLELFCNTDQMDSAAKLLETMAHSKCKPNFVTYSIM 264

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           V    + G  + A   LE+ +  GY P+       V GLC   +++ A + L  M  +  
Sbjct: 265 VQKFAEMGRMVEARAFLEQLVVCGYAPNLLVCNAYVAGLCKTGEMDLASRFLTVMAEEGC 324

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
              T   N  +   C +    E   VL  M+     PD  T + +I G C  G+IE A  
Sbjct: 325 RANTATYNSLVEGFCKLGRMDEAERVLEEMIAEGSLPDSTTYSVLIQGLCSAGQIEHAFM 384

Query: 301 VLNDMV-AGKFCAPDAVTFTTIIFGLLNVGRIQEA 334
           V+  +  A +   PD  TF  +I  L  +G +  A
Sbjct: 385 VMLQVTRAVESARPDPATFVKLIEKLCELGEMDRA 419



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 111/253 (43%), Gaps = 9/253 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +   C  +R  EA  +   M   G  P +V++  L+  +C T +MD A K+ + M H   
Sbjct: 195 LHAFCKAARPEEALGMTDIMVEMGFCPTIVTFNALLELFCNTDQMDSAAKLLETMAHSKC 254

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +TYS++V+       +  A   + +L        +L V NA     V  LC+ G +
Sbjct: 255 KPNFVTYSIMVQKFAEMGRMVEARAFLEQLV-VCGYAPNLLVCNA----YVAGLCKTGEM 309

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +   R    M +            +++  C+ GR   A RV+  M   G  P   +Y+ +
Sbjct: 310 DLASRFLTVMAEEGCRANTATYNSLVEGFCKLGRMDEAERVLEEMIAEGSLPDSTTYSVL 369

Query: 181 VHGLCKHGGCMRAYQLLEEGIQF--GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
           + GLC  G    A+ ++ +  +      P   T+  L+E LC   ++++A  VL+ M   
Sbjct: 370 IQGLCSAGQIEHAFMVMLQVTRAVESARPDPATFVKLIEKLCELGEMDRAALVLERM--G 427

Query: 239 KDVDRTRICNIYL 251
            + +  R+C + +
Sbjct: 428 DEHEEFRVCQVLI 440



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 100/225 (44%), Gaps = 5/225 (2%)

Query: 280 ITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF-GLLNVGRIQEALNLL 338
            T  T+++G C  G  +EA +++ +           V    ++  G    G + EA + L
Sbjct: 15  FTYGTLVHGHCLAGEFDEAKRLVEEFKDTGMSPGSLVVLHNLMLKGFSEAGFVDEAKSHL 74

Query: 339 YQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE 398
           +++       P  V+YN ++  L    R++EA+E    M   GV  +  TY  +  GL +
Sbjct: 75  HRM----DCKPNSVSYNTLIDALCSSGRIQEAREELQAMAKRGVAPNRVTYNAMATGLGK 130

Query: 399 SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVC 458
           +  LDEA      +           +  +++ LC+SG+  EA   +  ++   + PNI+ 
Sbjct: 131 AGLLDEAFELMGVMESAGFALTAVTFNPVVEFLCKSGRPDEACKVMETMLLRNIEPNILT 190

Query: 459 YNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGN 503
            N+++   CK +   EA  +   M + G  P  VT+  L +L  N
Sbjct: 191 LNLILHAFCKAARPEEALGMTDIMVEMGFCPTIVTFNALLELFCN 235



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 60/122 (49%), Gaps = 9/122 (7%)

Query: 388 TYAIVIDGLCESNQLDEAKR----FWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
           TY  ++ G C + + DEAKR    F D  + P ++    ++  M+KG   +G + EA   
Sbjct: 16  TYGTLVHGHCLAGEFDEAKRLVEEFKDTGMSPGSL--VVLHNLMLKGFSEAGFVDEAKSH 73

Query: 444 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGN 503
           L+ +      PN V YN +ID  C     +EA + L+ M K G+ P+ VT+  +    G 
Sbjct: 74  LHRM---DCKPNSVSYNTLIDALCSSGRIQEAREELQAMAKRGVAPNRVTYNAMATGLGK 130

Query: 504 RG 505
            G
Sbjct: 131 AG 132


>gi|242086791|ref|XP_002439228.1| hypothetical protein SORBIDRAFT_09g002630 [Sorghum bicolor]
 gi|241944513|gb|EES17658.1| hypothetical protein SORBIDRAFT_09g002630 [Sorghum bicolor]
          Length = 653

 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 127/497 (25%), Positives = 224/497 (45%), Gaps = 12/497 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D L   + VG    +  +M+  G  PNV +Y  L+   C+   +  A K+ DEM   G 
Sbjct: 141 IDALLRENMVGAVALVCGNMRKDGVQPNVFTYNLLVRALCQNHRVGAARKMLDEMATKGC 200

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TY  +V  +     V+ A        E +     ++   A++  ++ +LCRE  +
Sbjct: 201 PPDDVTYGTIVSALCTLGRVDEAT-------EVLSAAPPVA---ASYNAVILALCREFRM 250

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            EVF +  DM              ++++ C++G    A  ++  M   G TP++ ++ ++
Sbjct: 251 QEVFAVVGDMVGRGLQPNVITYTTIVNAFCKAGELRMACAILARMVITGCTPNVATFTAL 310

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           V GL   G    A  + +  +  G+ PS  +Y VL+ GLC   DL+ A  VL  M     
Sbjct: 311 VGGLFNDGRVHDALDMWKCMVAEGWAPSTVSYNVLIRGLCSVGDLKGASSVLNDMEQHGC 370

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
               R  +  +       +    +++   M ++ C+P+V+    ++  FCK     +A  
Sbjct: 371 FPNARTYSTLIDGFSKAGDLDGAISIWNDMTRSGCKPNVVVYTNMVGVFCKKLMFNQAES 430

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +++ M+  + C P+ VTF T+I  L N  R+  AL + ++ M + G  P   TYN +L G
Sbjct: 431 LIDKMLV-ENCPPNTVTFNTLIRSLCNCRRVGRALGVFHE-MRRHGCPPNGRTYNELLHG 488

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           LFR     +A ++   M   G+     TY  V+ GLC+     EA  F   ++      D
Sbjct: 489 LFREGNCGDALQMVIEMQNHGIELSLVTYNTVVSGLCQMRMGREAMFFVGRMIVRGIQPD 548

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
            + + A+I   C+ G++  A   L  +       NI+ Y +++   C      +A   L 
Sbjct: 549 AFTFTAIIHAYCKEGEVRMAAWILGAMNVVNCGRNILVYTILMAELCNQDKLEDAMVYLL 608

Query: 481 EMRKNGLNPDAVTWRIL 497
           +M   G+ P+ VTW +L
Sbjct: 609 KMLYEGIYPNTVTWNVL 625



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 111/481 (23%), Positives = 195/481 (40%), Gaps = 51/481 (10%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   RVG A K+  +M ++G  P+ V+Y T++   C  G +D A +V          P 
Sbjct: 179 LCQNHRVGAARKMLDEMATKGCPPDDVTYGTIVSALCTLGRVDEATEVLS-----AAPPV 233

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           + +Y+ ++  + R   ++    ++  +  R      L  N   +  +V++ C+ G +   
Sbjct: 234 AASYNAVILALCREFRMQEVFAVVGDMVGR-----GLQPNVITYTTIVNAFCKAGELRMA 288

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             I   M              ++  L   GR H A  +   M   G  PS VSYN ++ G
Sbjct: 289 CAILARMVITGCTPNVATFTALVGGLFNDGRVHDALDMWKCMVAEGWAPSTVSYNVLIRG 348

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LC  G    A  +L +  Q G  P+  TY  L++G     DL+ A  +   M        
Sbjct: 349 LCSVGDLKGASSVLNDMEQHGCFPNARTYSTLIDGFSKAGDLDGAISIWNDMTRSGCKPN 408

Query: 244 TRICNIYLRALC--LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
             +    +   C  L+ N  E L  +  ML   C P+ +T NT+I   C   R+  AL V
Sbjct: 409 VVVYTNMVGVFCKKLMFNQAESL--IDKMLVENCPPNTVTFNTLIRSLCNCRRVGRALGV 466

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
            ++M     C P+  T+  ++ GL   G   +AL ++ + M   G    +VTYN V+ GL
Sbjct: 467 FHEM-RRHGCPPNGRTYNELLHGLFREGNCGDALQMVIE-MQNHGIELSLVTYNTVVSGL 524

Query: 362 FRLRRVEEAKEVFNCMLGIGVVADSTT--------------------------------- 388
            ++R   EA      M+  G+  D+ T                                 
Sbjct: 525 CQMRMGREAMFFVGRMIVRGIQPDAFTFTAIIHAYCKEGEVRMAAWILGAMNVVNCGRNI 584

Query: 389 --YAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE 446
             Y I++  LC  ++L++A  +   +++     +   +  +++G+ R+   +    F+  
Sbjct: 585 LVYTILMAELCNQDKLEDAMVYLLKMLYEGIYPNTVTWNVLVRGVFRNLGCNNPSDFIQH 644

Query: 447 L 447
           +
Sbjct: 645 I 645


>gi|297802850|ref|XP_002869309.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297315145|gb|EFH45568.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1114

 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 138/538 (25%), Positives = 245/538 (45%), Gaps = 85/538 (15%)

Query: 1    MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
            ++ L    RV EA K+F  MK     P VV+Y TL+ G  + G++  A ++F+ M   G 
Sbjct: 547  INTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGC 606

Query: 61   LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             PN++T++ L   + +  +V  A  ++FK+ +     +  + N   F      L + G V
Sbjct: 607  PPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFG-----LVKNGQV 661

Query: 121  NEVFRIAEDMPQGKSVNEEFAC-GHMIDSLCRSGRNHGASRVV----------------- 162
             E       M   K V  +F     ++  + ++G    A +++                 
Sbjct: 662  KEAMCFFHQMK--KLVYPDFVTLCTLLPGVVKAGLIEDAYKIIANFLYSCADQPANLFWE 719

Query: 163  ----YVMRKRGLTPSLVSYNS--IVHGLC---------------KHGGCMRAYQLLEEGI 201
                 ++ + G+  + VS++   + +G+C               KH     A  L E+  
Sbjct: 720  DLMGSILAEAGIDNA-VSFSERLVANGICRDGDSILVPIIRYSFKHNNASGARMLFEKFT 778

Query: 202  Q-FGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNP 260
            +  G  P   TY +L+ GL     +E A+                  +++L+    +KN 
Sbjct: 779  KDLGVQPKLPTYNLLIGGLLEADMIEIAQ------------------DVFLQ----VKN- 815

Query: 261  TELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTT 320
                        T C PDV T N +++ + K G+I+E  ++  +M A + C P+ +T   
Sbjct: 816  ------------TGCIPDVATYNFLLDAYGKSGKIDELFEIYKEMSAHE-CEPNTITHNI 862

Query: 321  IIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI 380
            +I GL+  G + +AL+L Y +M  R +SP   TY  ++ GL +  R+ EAK++F  M   
Sbjct: 863  VISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMSDY 922

Query: 381  GVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEA 440
            G   +   Y I+I+G  ++ + D A   +  +V      D   Y+ ++  LC  G++ E 
Sbjct: 923  GCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEG 982

Query: 441  VHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN-GLNPDAVTWRIL 497
            +H+  EL +SG+ P++VCYN++I+G  K     EA  +  EM+K+ G+ PD  T+  L
Sbjct: 983  LHYFRELKESGLNPDVVCYNLIINGLGKFHRLEEALVLFNEMKKSRGITPDLYTYNSL 1040



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 137/529 (25%), Positives = 228/529 (43%), Gaps = 53/529 (10%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D+      +   ++ + +M+  GHVP+VV++T L+   C+ G    A+   D MR  G+
Sbjct: 337 LDRFSDNRDLDSVNQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFAKLDVMRDQGI 396

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLV--DSLCREG 118
           LPN  TY+ L+ G+LR   ++ A     ++++ M   E L V   A+  +V  D   + G
Sbjct: 397 LPNLHTYNTLICGLLRVHRLDDA----LEIFDNM---ESLGVKPTAYTYIVFIDYYGKSG 449

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
                    E M          AC   + SL ++GR+  A ++ Y ++  GL P  V+YN
Sbjct: 450 DSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYN 509

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
            ++    K G    A +LL E ++    P       L+  L     +++A K+   M   
Sbjct: 510 MMMKCYSKVGEIDEAIKLLSEMVENCCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEM 569

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
           K        N  L  L       E + +   M+Q  C P+ IT NT+ +  CK   +  A
Sbjct: 570 KLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLA 629

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
           LK+L  M+    C PD  T+ TIIFGL+  G+++EA+   +Q+  ++   P  VT   +L
Sbjct: 630 LKMLFKMM-DMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQM--KKLVYPDFVTLCTLL 686

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDD----IVW 414
            G+ +   +E+A                  Y I+ + L  S     A  FW+D    I+ 
Sbjct: 687 PGVVKAGLIEDA------------------YKIIANFL-YSCADQPANLFWEDLMGSILA 727

Query: 415 PSNIHDNYVYAAMI--KGLCRSGKI--------------HEAVHFLYELV--DSGVTPNI 456
            + I +   ++  +   G+CR G                      L+E    D GV P +
Sbjct: 728 EAGIDNAVSFSERLVANGICRDGDSILVPIIRYSFKHNNASGARMLFEKFTKDLGVQPKL 787

Query: 457 VCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
             YN++I G  +  M   A  +  +++  G  PD  T+  L   +G  G
Sbjct: 788 PTYNLLIGGLLEADMIEIAQDVFLQVKNTGCIPDVATYNFLLDAYGKSG 836



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 117/478 (24%), Positives = 219/478 (45%), Gaps = 43/478 (8%)

Query: 16  LFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVL 75
           L  +M++ G  PNV ++T  I    R G+++ AY++   M   G  P+ +TY+VL+  + 
Sbjct: 247 LLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALC 306

Query: 76  RTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKS 135
             R ++ A     +++ +MK       +   +  L+D       ++ V +   +M +   
Sbjct: 307 TARKLDCAK----EVFAKMKTGRH-KPDRVTYITLLDRFSDNRDLDSVNQFWSEMEKDGH 361

Query: 136 VNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQ 195
           V +      ++D+LC++G    A   + VMR +G+ P+L +YN+++ GL +      A +
Sbjct: 362 VPDVVTFTILVDALCKAGNFGEAFAKLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALE 421

Query: 196 LLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALC 255
           + +     G  P+ +TY V ++      D   A +  + M +K        CN  L +L 
Sbjct: 422 IFDNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLA 481

Query: 256 LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA 315
                 E   +   +      PD +T N ++  + K+G I+EA+K+L++MV    C PD 
Sbjct: 482 KAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMVE-NCCEPDV 540

Query: 316 VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN 375
           +   ++I  L    R+ EA  +  + M +    P +VTYN +L GL +  +++EA E+F 
Sbjct: 541 IVVNSLINTLYKADRVDEAWKMFMR-MKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFE 599

Query: 376 CMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG 435
            M+  G   ++ T+  + D  C                                 LC++ 
Sbjct: 600 GMVQKGCPPNTITFNTLFD--C---------------------------------LCKND 624

Query: 436 KIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVT 493
           ++  A+  L++++D G  P++  YN +I G  K    +EA     +M+K  + PD VT
Sbjct: 625 EVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKKL-VYPDFVT 681



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 119/478 (24%), Positives = 201/478 (42%), Gaps = 42/478 (8%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M+  G V N  SY  LIH   ++     A +V+  M   G  P+  TYS L+ G+ + RD
Sbjct: 181 MREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILDGFRPSLQTYSSLMVGLGKRRD 240

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
           +E    L+       KE E L +    +                F I             
Sbjct: 241 IESVMGLL-------KEMETLGLKPNVY---------------TFTIC------------ 266

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
                 I  L R+G+ + A  ++  M   G  P +V+Y  ++  LC       A ++  +
Sbjct: 267 ------IRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFAK 320

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
                + P   TY  L++      DL+   +    M     V       I + ALC   N
Sbjct: 321 MKTGRHKPDRVTYITLLDRFSDNRDLDSVNQFWSEMEKDGHVPDVVTFTILVDALCKAGN 380

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
             E    L  M      P++ T NT+I G  ++ R+++AL++ ++M +     P A T+ 
Sbjct: 381 FGEAFAKLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALEIFDNMESLG-VKPTAYTYI 439

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
             I      G    AL   ++ M  +G +P IV  NA L  L +  R  EAK++F  +  
Sbjct: 440 VFIDYYGKSGDSVSALET-FEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKD 498

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
           IG+V DS TY +++    +  ++DEA +   ++V      D  V  ++I  L ++ ++ E
Sbjct: 499 IGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMVENCCEPDVIVVNSLINTLYKADRVDE 558

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           A      + +  + P +V YN ++ G  K    +EA ++   M + G  P+ +T+  L
Sbjct: 559 AWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTL 616



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 93/387 (24%), Positives = 178/387 (45%), Gaps = 25/387 (6%)

Query: 22   SRGHVPNVVSYTT--LIHGYCRTGEMDV---------------AYKVFDEM-RHCGVLPN 63
            +   + N VS++   + +G CR G+  +               A  +F++  +  GV P 
Sbjct: 727  AEAGIDNAVSFSERLVANGICRDGDSILVPIIRYSFKHNNASGARMLFEKFTKDLGVQPK 786

Query: 64   SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
              TY++L+ G+L    +E A  +  ++     +      + A +  L+D+  + G ++E+
Sbjct: 787  LPTYNLLIGGLLEADMIEIAQDVFLQV-----KNTGCIPDVATYNFLLDAYGKSGKIDEL 841

Query: 124  FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVY-VMRKRGLTPSLVSYNSIVH 182
            F I ++M   +          +I  L ++G    A  + Y +M  R  +P+  +Y  ++ 
Sbjct: 842  FEIYKEMSAHECEPNTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLID 901

Query: 183  GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
            GL K G    A QL E    +G  P+   Y +L+ G     + + A  + + M+ +    
Sbjct: 902  GLSKSGRLYEAKQLFEGMSDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRP 961

Query: 243  RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
              +  ++ +  LC++    E L+    + ++   PDV+  N +ING  K  R+EEAL + 
Sbjct: 962  DLKTYSVLVDCLCMVGRVDEGLHYFRELKESGLNPDVVCYNLIINGLGKFHRLEEALVLF 1021

Query: 303  NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
            N+M   +   PD  T+ ++I  L   G ++EA   +Y  + + G  P + T+NA++RG  
Sbjct: 1022 NEMKKSRGITPDLYTYNSLILNLGIAGMVEEA-GKIYNEIQRAGLEPNVFTFNALIRGYS 1080

Query: 363  RLRRVEEAKEVFNCMLGIGVVADSTTY 389
               + E A  V+  M+  G   ++ TY
Sbjct: 1081 LSGKPEHAYAVYQTMVTGGFSPNTGTY 1107



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 91/366 (24%), Positives = 161/366 (43%), Gaps = 37/366 (10%)

Query: 141 ACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEG 200
            C +M+++L   G+    + V  +M+KR +     +Y +I   L   GG  +A   L + 
Sbjct: 122 TCNYMLEALRVDGKIEEMAYVFDLMQKRIIKRDTNTYLTIFKCLSVKGGLRQAPFALRKM 181

Query: 201 IQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNP 260
            +FG++ + ++Y  L+  L                       ++R C             
Sbjct: 182 REFGFVLNAYSYNGLIHLLL----------------------KSRFC------------- 206

Query: 261 TELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTT 320
           TE + V   M+    +P + T ++++ G  K   IE  + +L +M       P+  TFT 
Sbjct: 207 TEAMEVYRRMILDGFRPSLQTYSSLMVGLGKRRDIESVMGLLKEMETLGL-KPNVYTFTI 265

Query: 321 IIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI 380
            I  L   G+I EA  +L + M   G  P +VTY  ++  L   R+++ AKEVF  M   
Sbjct: 266 CIRVLGRAGKINEAYEILKR-MDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFAKMKTG 324

Query: 381 GVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEA 440
               D  TY  ++D   ++  LD   +FW ++    ++ D   +  ++  LC++G   EA
Sbjct: 325 RHKPDRVTYITLLDRFSDNRDLDSVNQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEA 384

Query: 441 VHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKL 500
              L  + D G+ PN+  YN +I G  ++    +A +I   M   G+ P A T+ +    
Sbjct: 385 FAKLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALEIFDNMESLGVKPTAYTYIVFIDY 444

Query: 501 HGNRGN 506
           +G  G+
Sbjct: 445 YGKSGD 450



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/342 (22%), Positives = 144/342 (42%), Gaps = 40/342 (11%)

Query: 13   AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVR 72
            A  +F  +K+ G +P+V +Y  L+  Y ++G++D  ++++ EM      PN++T+++++ 
Sbjct: 806  AQDVFLQVKNTGCIPDVATYNFLLDAYGKSGKIDELFEIYKEMSAHECEPNTITHNIVIS 865

Query: 73   GVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQ 132
            G+++  +V+ A      L+  +  + D S     +  L+D L + G + E  ++ E M  
Sbjct: 866  GLVKAGNVDDA----LDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMSD 921

Query: 133  GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMR 192
                        +I+   ++G    A  +   M K G+ P L +Y+ +V  LC  G    
Sbjct: 922  YGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDE 981

Query: 193  AYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLR 252
                  E  + G  P    Y +++ GL     LE+A  +   M   + +           
Sbjct: 982  GLHYFRELKESGLNPDVVCYNLIINGLGKFHRLEEALVLFNEMKKSRGI----------- 1030

Query: 253  ALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCA 312
                                    PD+ T N++I      G +EEA K+ N++       
Sbjct: 1031 -----------------------TPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGL-E 1066

Query: 313  PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTY 354
            P+  TF  +I G    G+ + A   +YQ M   G+SP   TY
Sbjct: 1067 PNVFTFNALIRGYSLSGKPEHAY-AVYQTMVTGGFSPNTGTY 1107



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 102/216 (47%), Gaps = 6/216 (2%)

Query: 1    MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
            +D L    R+ EA +LF  M   G  PN   Y  LI+G+ + GE D A  +F  M   GV
Sbjct: 900  IDGLSKSGRLYEAKQLFEGMSDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGV 959

Query: 61   LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             P+  TYSVLV  +     V+         + R  +E  L+ +   +  +++ L +   +
Sbjct: 960  RPDLKTYSVLVDCLCMVGRVDEG-----LHYFRELKESGLNPDVVCYNLIINGLGKFHRL 1014

Query: 121  NEVFRIAEDMPQGKSVNEE-FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
             E   +  +M + + +  + +    +I +L  +G    A ++   +++ GL P++ ++N+
Sbjct: 1015 EEALVLFNEMKKSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNA 1074

Query: 180  IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVL 215
            ++ G    G    AY + +  +  G+ P+  TY+ L
Sbjct: 1075 LIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTYEQL 1110


>gi|414874052|tpg|DAA52609.1| TPA: hypothetical protein ZEAMMB73_367214 [Zea mays]
          Length = 716

 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 138/536 (25%), Positives = 238/536 (44%), Gaps = 51/536 (9%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVS-----YTTLIHGYCRTGEMDVAYKVFDEMRHCG 59
           CG S    A  LF    SR   P V+S     Y  L+    R    ++A   F ++   G
Sbjct: 87  CG-SGPALAVALFNRAASRAQGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTG 145

Query: 60  VLPNSLTYSVLVRGVLRTRDVERA-NVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREG 118
           +  + +  + L++G    +  + A ++L+ +  E     +  S     ++ L+ SLC +G
Sbjct: 146 LRVDIIIANHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFS-----YSILLKSLCDQG 200

Query: 119 YVNEVFRIAEDMPQGKSV--NEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVS 176
              +   +   M +G +V   +  A   +ID   + G  + A  +   M +RG+ P LV+
Sbjct: 201 KSGQADDLLRMMAEGGAVCSPDVVAYTTVIDCFFKEGDVNKACDLFKEMVQRGIPPDLVT 260

Query: 177 YNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFML 236
           Y+S+VH LCK     +A   L + +  G LP   TY  L+ G       ++A +V + M 
Sbjct: 261 YSSVVHALCKARAMGKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMR 320

Query: 237 SKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIE 296
               +      N+ + +LC      E  +V   M      PDV +   ++NG+   G + 
Sbjct: 321 RHSILPDVVTLNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYKIMLNGYATKGCLV 380

Query: 297 EALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
           + +  L D++ G   APD  TF+ +I    N G + +A+ +++  M   G  P +VTY  
Sbjct: 381 D-MTDLFDLMLGDGIAPDIYTFSVLIKAYANCGMLDKAM-IIFNEMRDHGVKPDVVTYTT 438

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD------ 410
           V+  L R+ ++++A E FN M+  GV  D   Y  +I G C    L +AK          
Sbjct: 439 VIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELILEIMNNG 498

Query: 411 ---DIVWPSNIHDNY--------------------------VYAAMIKGLCRSGKIHEAV 441
              DIV+ S+I +N                           VY+ ++ G C  GK+ +A+
Sbjct: 499 MRLDIVFFSSIINNLCKLGRIMDAQNIFDLTVNVGQHPDAVVYSMLMDGYCLVGKMEKAL 558

Query: 442 HFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
                +V +G+ PN+V Y  +++G CK+    E   + REM + G+ P  + + I+
Sbjct: 559 RVFDAMVSAGIEPNVVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNII 614



 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 120/499 (24%), Positives = 228/499 (45%), Gaps = 9/499 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHV--PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHC 58
           +  LC   + G+A  L   M   G V  P+VV+YTT+I  + + G+++ A  +F EM   
Sbjct: 193 LKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYTTVIDCFFKEGDVNKACDLFKEMVQR 252

Query: 59  GVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREG 118
           G+ P+ +TYS +V  + + R + +A   +     R    + +  +N  + NL+      G
Sbjct: 253 GIPPDLVTYSSVVHALCKARAMGKAEAFL-----RQMVNKGVLPDNWTYNNLIYGYSSTG 307

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
              E  R+ ++M +   + +      ++ SLC+ G+   A  V   M  +G  P + SY 
Sbjct: 308 QWKEAVRVFKEMRRHSILPDVVTLNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYK 367

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
            +++G    G  +    L +  +  G  P  +T+ VL++       L+KA  +   M   
Sbjct: 368 IMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFSVLIKAYANCGMLDKAMIIFNEMRDH 427

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
                       + ALC I    + +     M+     PD    + +I GFC  G + +A
Sbjct: 428 GVKPDVVTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKA 487

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
            +++ +++       D V F++II  L  +GRI +A N+ + +    G  P  V Y+ ++
Sbjct: 488 KELILEIMNNGM-RLDIVFFSSIINNLCKLGRIMDAQNI-FDLTVNVGQHPDAVVYSMLM 545

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
            G   + ++E+A  VF+ M+  G+  +   Y  +++G C+  ++DE    + +++     
Sbjct: 546 DGYCLVGKMEKALRVFDAMVSAGIEPNVVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIK 605

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI 478
               +Y  +I GL  +G+   A    +E+ +SG+  N   YN+V+ G  K     EA  +
Sbjct: 606 PSTILYNIIIDGLFVAGRTVPAKVKFHEMTESGIAINKCTYNIVLRGFFKNRCFDEAIFL 665

Query: 479 LREMRKNGLNPDAVTWRIL 497
            +E+R   +  D +T   +
Sbjct: 666 FKELRAMNVKIDIITLNTM 684



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 102/412 (24%), Positives = 186/412 (45%), Gaps = 42/412 (10%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M  LC   ++ EA  +F  M  +G  P+V SY  +++GY   G +     +FD M   G+
Sbjct: 335 MGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYKIMLNGYATKGCLVDMTDLFDLMLGDGI 394

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+  T+SVL++       +++A ++  ++      +  +  +   +  ++ +LCR G +
Sbjct: 395 APDIYTFSVLIKAYANCGMLDKAMIIFNEM-----RDHGVKPDVVTYTTVIAALCRIGKM 449

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           ++       M       +++A   +I   C  G    A  ++  +   G+   +V ++SI
Sbjct: 450 DDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELILEIMNNGMRLDIVFFSSI 509

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++ LCK G  M A  + +  +  G  P    Y +L++G C    +EKA +V   M+S   
Sbjct: 510 INNLCKLGRIMDAQNIFDLTVNVGQHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVS--- 566

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                              +P+V+   T++NG+CK+GRI+E L 
Sbjct: 567 --------------------------------AGIEPNVVVYGTLVNGYCKIGRIDEGLS 594

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +  +M+  K   P  + +  II GL   GR   A  + +  M + G +    TYN VLRG
Sbjct: 595 LFREMLQ-KGIKPSTILYNIIIDGLFVAGRTVPA-KVKFHEMTESGIAINKCTYNIVLRG 652

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI 412
            F+ R  +EA  +F  +  + V  D  T   +I G+ ++ +++EAK  +  I
Sbjct: 653 FFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASI 704



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 124/238 (52%), Gaps = 3/238 (1%)

Query: 270 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG 329
           +L+T  + D+I  N ++ GFC+  R +EAL +L        C PD  +++ ++  L + G
Sbjct: 141 LLRTGLRVDIIIANHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQG 200

Query: 330 RIQEALNLLYQVMPQRGY--SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADST 387
           +  +A +LL ++M + G   SP +V Y  V+   F+   V +A ++F  M+  G+  D  
Sbjct: 201 KSGQADDLL-RMMAEGGAVCSPDVVAYTTVIDCFFKEGDVNKACDLFKEMVQRGIPPDLV 259

Query: 388 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYEL 447
           TY+ V+  LC++  + +A+ F   +V    + DN+ Y  +I G   +G+  EAV    E+
Sbjct: 260 TYSSVVHALCKARAMGKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEM 319

Query: 448 VDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
               + P++V  N+++   CK    +EA  +   M   G NPD  +++I+   +  +G
Sbjct: 320 RRHSILPDVVTLNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYKIMLNGYATKG 377


>gi|15237384|ref|NP_197167.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171647|sp|Q9FMD3.1|PP389_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g16640, mitochondrial; Flags: Precursor
 gi|10176973|dbj|BAB10191.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737318|dbj|BAF00605.1| hypothetical protein [Arabidopsis thaliana]
 gi|332004938|gb|AED92321.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 504

 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 125/476 (26%), Positives = 221/476 (46%), Gaps = 77/476 (16%)

Query: 22  SRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVE 81
           SR    N   Y  ++    R  ++D +  +F  M  C  LP+   +S L+  + +   ++
Sbjct: 39  SRRAYSNGSDYREMLRNGIRFMKLDDSLDLFFHMVQCRPLPSIADFSRLLSAISK---MK 95

Query: 82  RANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFA 141
           + +V+++ LWE+M+              +  +LC                          
Sbjct: 96  KYDVVIY-LWEQMQ-----------MLGIPHNLC-------------------------T 118

Query: 142 CGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGI 201
           C  +++  CR  +   A   +  M K G  PS+V++ S+++G C+      A  + ++ +
Sbjct: 119 CNILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMV 178

Query: 202 QFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPT 261
             GY P+   Y  +++GLC                  K VD                N  
Sbjct: 179 GMGYKPNVVIYNTIIDGLC----------------KSKQVD----------------NAL 206

Query: 262 ELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTI 321
           +LLN    M +    PDV+T N++I+G C  GR  +A ++++ M   +   PD  TF  +
Sbjct: 207 DLLNR---MEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREI-YPDVFTFNAL 262

Query: 322 IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG 381
           I   +  GR+ EA    Y+ M +R   P IVTY+ ++ GL    R++EA+E+F  M+  G
Sbjct: 263 IDACVKEGRVSEAEEF-YEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKG 321

Query: 382 VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAV 441
              D  TY+I+I+G C+S +++   + + ++     + +   Y  +I+G CR+GK++ A 
Sbjct: 322 CFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAE 381

Query: 442 HFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
                +V  GV PNI+ YNV++ G C      +A  IL +M+KNG++ D VT+ I+
Sbjct: 382 EIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQKNGMDADIVTYNII 437



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 109/451 (24%), Positives = 214/451 (47%), Gaps = 8/451 (1%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           ++ ++  LFF M     +P++  ++ L+    +  + DV   ++++M+  G+  N  T +
Sbjct: 61  KLDDSLDLFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCN 120

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
           +L+    R   +  A   + K+ +   E   ++     F +L++  CR   V +   + +
Sbjct: 121 ILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVT-----FGSLLNGFCRGDRVYDALYMFD 175

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
            M              +ID LC+S +   A  ++  M K G+ P +V+YNS++ GLC  G
Sbjct: 176 QMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSG 235

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
               A +++    +    P   T+  L++    E  + +A +  + M+ +         +
Sbjct: 236 RWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYS 295

Query: 249 IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 308
           + +  LC+     E   +  FM+   C PDV+T + +ING+CK  ++E  +K+  +M + 
Sbjct: 296 LLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEM-SQ 354

Query: 309 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE 368
           +    + VT+T +I G    G++  A  + ++ M   G  P I+TYN +L GL    ++E
Sbjct: 355 RGVVRNTVTYTILIQGYCRAGKLNVAEEI-FRRMVFCGVHPNIITYNVLLHGLCDNGKIE 413

Query: 369 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI 428
           +A  +   M   G+ AD  TY I+I G+C++ ++ +A   +  +     + D + Y  M+
Sbjct: 414 KALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTYTTMM 473

Query: 429 KGLCRSGKIHEAVHFLYELVDSGVTPNIVCY 459
            GL + G   EA     ++ + G+ PN  CY
Sbjct: 474 LGLYKKGLRREADALFRKMKEDGILPN-ECY 503



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 100/385 (25%), Positives = 184/385 (47%), Gaps = 7/385 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C  S++  A      M   GH P++V++ +L++G+CR   +  A  +FD+M   G 
Sbjct: 123 LNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGY 182

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN + Y+ ++ G+ +++ V+ A      L  RM E++ +  +   + +L+  LC  G  
Sbjct: 183 KPNVVIYNTIIDGLCKSKQVDNA----LDLLNRM-EKDGIGPDVVTYNSLISGLCSSGRW 237

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           ++  R+   M + +   + F    +ID+  + GR   A      M +R L P +V+Y+ +
Sbjct: 238 SDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLL 297

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++GLC +     A ++    +  G  P   TY +L+ G C    +E   K+   M  +  
Sbjct: 298 IYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGV 357

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           V  T    I ++  C          +   M+     P++IT N +++G C  G+IE+AL 
Sbjct: 358 VRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALV 417

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +L DM      A D VT+  II G+   G + +A + +Y  +  +G  P I TY  ++ G
Sbjct: 418 ILADMQKNGMDA-DIVTYNIIIRGMCKAGEVADAWD-IYCSLNCQGLMPDIWTYTTMMLG 475

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVAD 385
           L++     EA  +F  M   G++ +
Sbjct: 476 LYKKGLRREADALFRKMKEDGILPN 500



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/206 (29%), Positives = 107/206 (51%), Gaps = 5/206 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC  SR+ EA ++F  M S+G  P+VV+Y+ LI+GYC++ +++   K+F EM   GV+ N
Sbjct: 301 LCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRN 360

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           ++TY++L++G  R   +  A     +++ RM     +  N   +  L+  LC  G + + 
Sbjct: 361 TVTYTILIQGYCRAGKLNVAE----EIFRRMV-FCGVHPNIITYNVLLHGLCDNGKIEKA 415

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             I  DM +     +      +I  +C++G    A  +   +  +GL P + +Y +++ G
Sbjct: 416 LVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTYTTMMLG 475

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSE 209
           L K G    A  L  +  + G LP+E
Sbjct: 476 LYKKGLRREADALFRKMKEDGILPNE 501



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 34/168 (20%), Positives = 77/168 (45%), Gaps = 2/168 (1%)

Query: 344 QRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLD 403
           +R YS G   Y  +LR   R  +++++ ++F  M+    +     ++ ++  + +  + D
Sbjct: 40  RRAYSNG-SDYREMLRNGIRFMKLDDSLDLFFHMVQCRPLPSIADFSRLLSAISKMKKYD 98

Query: 404 EAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463
                W+ +      H+      ++   CR  ++  A+ FL +++  G  P+IV +  ++
Sbjct: 99  VVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLL 158

Query: 464 DGACKLSMKREAYQILREMRKNGLNPDAVTWR-ILDKLHGNRGNDFGL 510
           +G C+     +A  +  +M   G  P+ V +  I+D L  ++  D  L
Sbjct: 159 NGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNAL 206


>gi|224130398|ref|XP_002320827.1| predicted protein [Populus trichocarpa]
 gi|222861600|gb|EEE99142.1| predicted protein [Populus trichocarpa]
          Length = 775

 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 126/473 (26%), Positives = 213/473 (45%), Gaps = 17/473 (3%)

Query: 35  LIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERM 94
           LI   CR  + +  + +F EM   G +  S   + L+ G+ R  +  R N LM K+ E  
Sbjct: 276 LITRLCRNRKTNRGWDLFTEMIKLGAVLESAACNSLLTGLAREGNFNRMNELMEKMVEM- 334

Query: 95  KEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGK-------SVNEEFAC-GHMI 146
               D+  N   F  L++ +C+   V++   + E M  GK       SV  +      +I
Sbjct: 335 ----DIQPNVVTFGILINHMCKFRRVDDALEVLEKMSGGKESGGISVSVEPDVVIYNTLI 390

Query: 147 DSLCRSGRNHGASRVVYVMR-KRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY 205
           D LC+ GR      ++  MR ++G  P  ++YN ++ G CK G   +  +L +E  + G 
Sbjct: 391 DGLCKVGRQQEGLGLMERMRSQKGCAPDTITYNCLIDGFCKAGEIEKGKELFDEMNKEGV 450

Query: 206 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 265
            P+  T   LV G+C    +  A         +            + A C + N  + + 
Sbjct: 451 APNVVTVNTLVGGMCRTGRVSSAVNFFVEAQRRGMKGDAVTYTALINAFCNVNNFEKAME 510

Query: 266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 325
           +   ML++ C PD I   T+I+GF + GR+ +A  VL ++       PD V + T+I G 
Sbjct: 511 LFNEMLKSGCSPDAIVYYTLISGFSQAGRMADASFVLAELKKLGI-RPDTVCYNTLIGGF 569

Query: 326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 385
               +      +L + M + G  P  +TYN ++    +   ++ A++V   M+  GVV  
Sbjct: 570 CRTNKFHRVFEMLKE-MEEAGLKPDTITYNTLIAYASKNGDLKFAQKVMRKMIKAGVVPT 628

Query: 386 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV-YAAMIKGLCRSGKIHEAVHFL 444
             TY  VI+  C +   +EA   + D+   S +  N V Y  +I  LC++ K+  AV  +
Sbjct: 629 VATYGAVINAYCLNGNGNEAMEIFKDMKAASKVPPNTVIYNILINSLCKNNKVKSAVSLM 688

Query: 445 YELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            ++   GVTPN   YN +  G        + ++ +  M ++  NPD +T  IL
Sbjct: 689 EDMKIWGVTPNTTTYNAIFKGLRDEKDLEKVFEFMDRMIEHACNPDYITMEIL 741



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 129/492 (26%), Positives = 217/492 (44%), Gaps = 68/492 (13%)

Query: 10  VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEM----RHCGVLPNSL 65
           V E+  LF D+     V N       +    R+G +  A KV DEM          PN  
Sbjct: 173 VEESLILFNDLDP--SVKNTYLRNVWLSILLRSGRVKDALKVIDEMFESNDDSNCRPNDA 230

Query: 66  TYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFR 125
           T  +L   +L+                R + EE LS               +  VN V +
Sbjct: 231 TGDILFSFLLK----------------RERNEELLS--------------EDEIVNLVLK 260

Query: 126 IAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLC 185
             E    G  ++  F  G +I  LCR+ + +    +   M K G      + NS++ GL 
Sbjct: 261 FGE---HGVLISS-FWMGRLITRLCRNRKTNRGWDLFTEMIKLGAVLESAACNSLLTGLA 316

Query: 186 KHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTR 245
           + G   R  +L+E+ ++    P+  T+ +L+  +C    ++ A +VL+ M   K+     
Sbjct: 317 REGNFNRMNELMEKMVEMDIQPNVVTFGILINHMCKFRRVDDALEVLEKMSGGKESGG-- 374

Query: 246 ICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM 305
                                    +    +PDV+  NT+I+G CK+GR +E L ++  M
Sbjct: 375 -------------------------ISVSVEPDVVIYNTLIDGLCKVGRQQEGLGLMERM 409

Query: 306 VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLR 365
            + K CAPD +T+  +I G    G I++   L +  M + G +P +VT N ++ G+ R  
Sbjct: 410 RSQKGCAPDTITYNCLIDGFCKAGEIEKGKEL-FDEMNKEGVAPNVVTVNTLVGGMCRTG 468

Query: 366 RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYA 425
           RV  A   F      G+  D+ TY  +I+  C  N  ++A   +++++      D  VY 
Sbjct: 469 RVSSAVNFFVEAQRRGMKGDAVTYTALINAFCNVNNFEKAMELFNEMLKSGCSPDAIVYY 528

Query: 426 AMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN 485
            +I G  ++G++ +A   L EL   G+ P+ VCYN +I G C+ +     +++L+EM + 
Sbjct: 529 TLISGFSQAGRMADASFVLAELKKLGIRPDTVCYNTLIGGFCRTNKFHRVFEMLKEMEEA 588

Query: 486 GLNPDAVTWRIL 497
           GL PD +T+  L
Sbjct: 589 GLKPDTITYNTL 600



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 106/409 (25%), Positives = 183/409 (44%), Gaps = 42/409 (10%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKS-RGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCG 59
           +D LC + R  E   L   M+S +G  P+ ++Y  LI G+C+ GE++   ++FDEM   G
Sbjct: 390 IDGLCKVGRQQEGLGLMERMRSQKGCAPDTITYNCLIDGFCKAGEIEKGKELFDEMNKEG 449

Query: 60  VLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGY 119
           V PN +T + LV G+ RT  V  A V  F   +R   + D       +  L+++ C    
Sbjct: 450 VAPNVVTVNTLVGGMCRTGRVSSA-VNFFVEAQRRGMKGDA----VTYTALINAFCNVNN 504

Query: 120 VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
             +   +  +M +     +      +I    ++GR   AS V+  ++K G+ P  V YN+
Sbjct: 505 FEKAMELFNEMLKSGCSPDAIVYYTLISGFSQAGRMADASFVLAELKKLGIRPDTVCYNT 564

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++ G C+     R +++L+E  + G  P   TY  L+       DL+ A+KV++ M+   
Sbjct: 565 LIGGFCRTNKFHRVFEMLKEMEEAGLKPDTITYNTLIAYASKNGDLKFAQKVMRKMIKAG 624

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
            V                                   P V T   VIN +C  G   EA+
Sbjct: 625 VV-----------------------------------PTVATYGAVINAYCLNGNGNEAM 649

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           ++  DM A     P+ V +  +I  L    +++ A++L+ + M   G +P   TYNA+ +
Sbjct: 650 EIFKDMKAASKVPPNTVIYNILINSLCKNNKVKSAVSLM-EDMKIWGVTPNTTTYNAIFK 708

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRF 408
           GL   + +E+  E  + M+      D  T  I+ + L    +++  K+F
Sbjct: 709 GLRDEKDLEKVFEFMDRMIEHACNPDYITMEILTEWLSAVGEIERLKKF 757



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 103/453 (22%), Positives = 189/453 (41%), Gaps = 18/453 (3%)

Query: 4   LCGLSRVGEAHK---LFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMR---- 56
           L GL+R G  ++   L   M      PNVV++  LI+  C+   +D A +V ++M     
Sbjct: 312 LTGLAREGNFNRMNELMEKMVEMDIQPNVVTFGILINHMCKFRRVDDALEVLEKMSGGKE 371

Query: 57  ----HCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVD 112
                  V P+ + Y+ L+ G+ +    +    LM    ERM+ ++  + +   +  L+D
Sbjct: 372 SGGISVSVEPDVVIYNTLIDGLCKVGRQQEGLGLM----ERMRSQKGCAPDTITYNCLID 427

Query: 113 SLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTP 172
             C+ G + +   + ++M +            ++  +CR+GR   A       ++RG+  
Sbjct: 428 GFCKAGEIEKGKELFDEMNKEGVAPNVVTVNTLVGGMCRTGRVSSAVNFFVEAQRRGMKG 487

Query: 173 SLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVL 232
             V+Y ++++  C      +A +L  E ++ G  P    Y  L+ G      +  A  VL
Sbjct: 488 DAVTYTALINAFCNVNNFEKAMELFNEMLKSGCSPDAIVYYTLISGFSQAGRMADASFVL 547

Query: 233 QFMLSKKDVDRTRIC-NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK 291
              L K  +    +C N  +   C       +  +L  M +   +PD IT NT+I    K
Sbjct: 548 A-ELKKLGIRPDTVCYNTLIGGFCRTNKFHRVFEMLKEMEEAGLKPDTITYNTLIAYASK 606

Query: 292 MGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGI 351
            G ++ A KV+  M+      P   T+  +I      G   EA+ +   +       P  
Sbjct: 607 NGDLKFAQKVMRKMIKAG-VVPTVATYGAVINAYCLNGNGNEAMEIFKDMKAASKVPPNT 665

Query: 352 VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDD 411
           V YN ++  L +  +V+ A  +   M   GV  ++TTY  +  GL +   L++   F D 
Sbjct: 666 VIYNILINSLCKNNKVKSAVSLMEDMKIWGVTPNTTTYNAIFKGLRDEKDLEKVFEFMDR 725

Query: 412 IVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFL 444
           ++  +   D      + + L   G+I     F+
Sbjct: 726 MIEHACNPDYITMEILTEWLSAVGEIERLKKFV 758


>gi|255574462|ref|XP_002528143.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532441|gb|EEF34234.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 653

 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 108/397 (27%), Positives = 199/397 (50%), Gaps = 4/397 (1%)

Query: 103 NNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVV 162
           N  +F  ++ S+C+ G V+    +  +MP  K V + +    ++D LC+  R   A  ++
Sbjct: 180 NVLSFNLIIKSMCKLGLVDNAIELFREMPVRKCVPDAYTYCTLMDGLCKVDRIDEAVSLL 239

Query: 163 YVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGE 222
             M+  G  PS  ++N +++GLCK G   R  +L++     G +P+E TY  L+ GLC +
Sbjct: 240 DEMQIEGCFPSPATFNVLINGLCKKGDFTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLK 299

Query: 223 SDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITL 282
             L+KA  +L  M+S K V         +  L       +   VLV M +     +    
Sbjct: 300 GKLDKALSLLDRMVSSKCVPNEVTYGTIINGLVKQGRALDGARVLVLMEERGYIVNEYVY 359

Query: 283 NTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVM 342
           + +++G  K G+ EEA+++  + +  K C  + V ++ ++ GL    +  EA+ +L + M
Sbjct: 360 SVLVSGLFKEGKSEEAMRLFKESM-DKGCKLNTVLYSALVDGLCRDRKPDEAMKILSE-M 417

Query: 343 PQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQL 402
             +G +P   T++++++G F +    +A EV+  M  I    +   Y+++I GLC+  ++
Sbjct: 418 TDKGCAPNAFTFSSLMKGFFEVGNSHKAIEVWKDMTKINCAENEVCYSVLIHGLCKDGKV 477

Query: 403 DEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELV--DSGVTPNIVCYN 460
            EA   W  ++      D   Y++MI+GLC +G + EA+    E++  +    P+++ YN
Sbjct: 478 MEAMMVWAKMLATGCRPDVVAYSSMIQGLCDAGSVEEALKLYNEMLCLEPDSQPDVITYN 537

Query: 461 VVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           ++ +  CK S    A  +L  M   G +PD VT  I 
Sbjct: 538 ILFNALCKQSSISRAVDLLNSMLDRGCDPDLVTCNIF 574



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 113/415 (27%), Positives = 201/415 (48%), Gaps = 8/415 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +  +C L  V  A +LF +M  R  VP+  +Y TL+ G C+   +D A  + DEM+  G 
Sbjct: 188 IKSMCKLGLVDNAIELFREMPVRKCVPDAYTYCTLMDGLCKVDRIDEAVSLLDEMQIEGC 247

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+  T++VL+ G+ +  D  R   L+  ++ +         N   +  L+  LC +G +
Sbjct: 248 FPSPATFNVLINGLCKKGDFTRVTKLVDNMFLK-----GCVPNEVTYNTLIHGLCLKGKL 302

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           ++   + + M   K V  E   G +I+ L + GR    +RV+ +M +RG   +   Y+ +
Sbjct: 303 DKALSLLDRMVSSKCVPNEVTYGTIINGLVKQGRALDGARVLVLMEERGYIVNEYVYSVL 362

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           V GL K G    A +L +E +  G   +   Y  LV+GLC +   ++A K+L  M  K  
Sbjct: 363 VSGLFKEGKSEEAMRLFKESMDKGCKLNTVLYSALVDGLCRDRKPDEAMKILSEMTDKGC 422

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                  +  ++    + N  + + V   M +  C  + +  + +I+G CK G++ EA+ 
Sbjct: 423 APNAFTFSSLMKGFFEVGNSHKAIEVWKDMTKINCAENEVCYSVLIHGLCKDGKVMEAMM 482

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVM-PQRGYSPGIVTYNAVLR 359
           V   M+A   C PD V ++++I GL + G ++EAL L  +++  +    P ++TYN +  
Sbjct: 483 VWAKMLATG-CRPDVVAYSSMIQGLCDAGSVEEALKLYNEMLCLEPDSQPDVITYNILFN 541

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCES-NQLDEAKRFWDDIV 413
            L +   +  A ++ N ML  G   D  T  I +  L E  +   +  +F D++V
Sbjct: 542 ALCKQSSISRAVDLLNSMLDRGCDPDLVTCNIFLRMLREKLDPPQDGAKFLDELV 596



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 125/524 (23%), Positives = 256/524 (48%), Gaps = 41/524 (7%)

Query: 11  GEAH------KLFFDMKSRGHV-PNVVSYTTLIHGYCRTGEMDVAYKVFDEM---RHCGV 60
           G+AH      +LF+ M    +  P V S+ ++++   + G  D A + ++ +   +   +
Sbjct: 118 GKAHLPNKAIELFYRMSFEFYCKPTVKSFNSVLNVIIQAGFHDRALEFYNHVVGAKDMNI 177

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           LPN L+++++++ + +   V+ A     +L+  M   + +  +   +  L+D LC+   +
Sbjct: 178 LPNVLSFNLIIKSMCKLGLVDNA----IELFREMPVRKCVP-DAYTYCTLMDGLCKVDRI 232

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E   + ++M              +I+ LC+ G     +++V  M  +G  P+ V+YN++
Sbjct: 233 DEAVSLLDEMQIEGCFPSPATFNVLINGLCKKGDFTRVTKLVDNMFLKGCVPNEVTYNTL 292

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +HGLC  G   +A  LL+  +    +P+E TY  ++ GL  +       +VL  M  +  
Sbjct: 293 IHGLCLKGKLDKALSLLDRMVSSKCVPNEVTYGTIINGLVKQGRALDGARVLVLMEERGY 352

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           +    + ++ +  L       E + +    +   C+ + +  + +++G C+  + +EA+K
Sbjct: 353 IVNEYVYSVLVSGLFKEGKSEEAMRLFKESMDKGCKLNTVLYSALVDGLCRDRKPDEAMK 412

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +L++M   K CAP+A TF++++ G   VG   +A+ + ++ M +   +   V Y+ ++ G
Sbjct: 413 ILSEM-TDKGCAPNAFTFSSLMKGFFEVGNSHKAIEV-WKDMTKINCAENEVCYSVLIHG 470

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVW--PSNI 418
           L +  +V EA  V+  ML  G   D   Y+ +I GLC++  ++EA + +++++   P + 
Sbjct: 471 LCKDGKVMEAMMVWAKMLATGCRPDVVAYSSMIQGLCDAGSVEEALKLYNEMLCLEPDSQ 530

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI-----------DGAC 467
            D   Y  +   LC+   I  AV  L  ++D G  P++V  N+ +           DGA 
Sbjct: 531 PDVITYNILFNALCKQSSISRAVDLLNSMLDRGCDPDLVTCNIFLRMLREKLDPPQDGAK 590

Query: 468 KLS------MKRE----AYQILREMRKNGLNPDAVTW-RILDKL 500
            L       +KR+    A +I+  M +  L+P A TW R++ +L
Sbjct: 591 FLDELVVRLLKRQRNLGASKIVEVMLQKFLSPKASTWARVVHEL 634



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 119/472 (25%), Positives = 222/472 (47%), Gaps = 11/472 (2%)

Query: 31  SYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKL 90
           ++ +LI  Y  + + +   KV + MR    + +  ++ V+ +   +     +A     +L
Sbjct: 74  TFYSLIENYAYSSDFNSLEKVLNRMRLENRVFSEKSFFVMFKAYGKAHLPNKA----IEL 129

Query: 91  WERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVN---EEFACGHMID 147
           + RM  E        +F ++++ + + G+ +        +   K +N      +   +I 
Sbjct: 130 FYRMSFEFYCKPTVKSFNSVLNVIIQAGFHDRALEFYNHVVGAKDMNILPNVLSFNLIIK 189

Query: 148 SLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLP 207
           S+C+ G    A  +   M  R   P   +Y +++ GLCK      A  LL+E    G  P
Sbjct: 190 SMCKLGLVDNAIELFREMPVRKCVPDAYTYCTLMDGLCKVDRIDEAVSLLDEMQIEGCFP 249

Query: 208 SEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVL 267
           S  T+ VL+ GLC + D  +  K++  M  K  V      N  +  LCL     + L++L
Sbjct: 250 SPATFNVLINGLCKKGDFTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLL 309

Query: 268 VFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLN 327
             M+ ++C P+ +T  T+ING  K GR  +  +VL  M    +   + V ++ ++ GL  
Sbjct: 310 DRMVSSKCVPNEVTYGTIINGLVKQGRALDGARVLVLMEERGYIVNEYV-YSVLVSGLFK 368

Query: 328 VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADST 387
            G+ +EA+ L  + M  +G     V Y+A++ GL R R+ +EA ++ + M   G   ++ 
Sbjct: 369 EGKSEEAMRLFKESM-DKGCKLNTVLYSALVDGLCRDRKPDEAMKILSEMTDKGCAPNAF 427

Query: 388 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYEL 447
           T++ ++ G  E     +A   W D+   +   +   Y+ +I GLC+ GK+ EA+    ++
Sbjct: 428 TFSSLMKGFFEVGNSHKAIEVWKDMTKINCAENEVCYSVLIHGLCKDGKVMEAMMVWAKM 487

Query: 448 VDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM--RKNGLNPDAVTWRIL 497
           + +G  P++V Y+ +I G C      EA ++  EM   +    PD +T+ IL
Sbjct: 488 LATGCRPDVVAYSSMIQGLCDAGSVEEALKLYNEMLCLEPDSQPDVITYNIL 539



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 106/423 (25%), Positives = 186/423 (43%), Gaps = 43/423 (10%)

Query: 89  KLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDS 148
           K++    +     V ++ F +L+++       N + ++   M     V  E +   M  +
Sbjct: 57  KIFSSPPKMGSFKVGDSTFYSLIENYAYSSDFNSLEKVLNRMRLENRVFSEKSFFVMFKA 116

Query: 149 LCRSGRNHGASRVVYVMR-KRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLP 207
             ++   + A  + Y M  +    P++ S+NS+++ + + G   RA +     +      
Sbjct: 117 YGKAHLPNKAIELFYRMSFEFYCKPTVKSFNSVLNVIIQAGFHDRALEFYNHVV------ 170

Query: 208 SEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALC---LIKNPTELL 264
                        G  D+     VL F             N+ ++++C   L+ N  EL 
Sbjct: 171 -------------GAKDMNILPNVLSF-------------NLIIKSMCKLGLVDNAIELF 204

Query: 265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM-VAGKFCAPDAVTFTTIIF 323
                M   +C PD  T  T+++G CK+ RI+EA+ +L++M + G  C P   TF  +I 
Sbjct: 205 RE---MPVRKCVPDAYTYCTLMDGLCKVDRIDEAVSLLDEMQIEG--CFPSPATFNVLIN 259

Query: 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 383
           GL   G       L+   M  +G  P  VTYN ++ GL    ++++A  + + M+    V
Sbjct: 260 GLCKKGDFTRVTKLVDN-MFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLDRMVSSKCV 318

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
            +  TY  +I+GL +  +  +  R    +     I + YVY+ ++ GL + GK  EA+  
Sbjct: 319 PNEVTYGTIINGLVKQGRALDGARVLVLMEERGYIVNEYVYSVLVSGLFKEGKSEEAMRL 378

Query: 444 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGN 503
             E +D G   N V Y+ ++DG C+     EA +IL EM   G  P+A T+  L K    
Sbjct: 379 FKESMDKGCKLNTVLYSALVDGLCRDRKPDEAMKILSEMTDKGCAPNAFTFSSLMKGFFE 438

Query: 504 RGN 506
            GN
Sbjct: 439 VGN 441


>gi|356538593|ref|XP_003537787.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Glycine max]
          Length = 583

 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 101/356 (28%), Positives = 185/356 (51%), Gaps = 5/356 (1%)

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQ---LLEEGI 201
            I+ LC++G+ + A  V+  ++  G +P++V+YN+++ G CK G   + Y+   +L+E +
Sbjct: 206 FINGLCKAGKLNKAEDVIEDIKAWGFSPNIVTYNTLIDGHCKKGSAGKMYRADAILKEML 265

Query: 202 QFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPT 261
                P+E T+  L++G C + ++  A+   + M  +         N  +  L       
Sbjct: 266 ANKICPNEITFNTLIDGFCKDENVLAAKNAFEEMQRQGLKPNIVTYNSLINGLSNNGKLD 325

Query: 262 ELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTI 321
           E + +   M+    +P+++T N +INGFCK   I+EA K+ +D +A +   P+A+TF T+
Sbjct: 326 EAIALWDKMVGLGLKPNIVTFNALINGFCKKKMIKEARKLFDD-IAEQDLVPNAITFNTM 384

Query: 322 IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG 381
           I      G ++E    L+  M   G  P + TYN ++ GL R + V  AK++ N M    
Sbjct: 385 IDAFCKAGMMEEGF-ALHNSMLDEGIFPNVSTYNCLIAGLCRNQNVRAAKKLLNEMENYE 443

Query: 382 VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAV 441
           + AD  TY I+I G C+  +  +A++   +++      ++  Y  ++ G C  G +  A+
Sbjct: 444 LKADVVTYNILIGGWCKDGEPSKAEKLLGEMLNVGVKPNHVTYNTLMDGYCMEGNLKAAL 503

Query: 442 HFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
               ++   G   N+V YNV+I G CK     +A ++L EM + GLNP+  T+ ++
Sbjct: 504 KVRTQMEKEGKRANVVTYNVLIKGFCKTGKLEDANRLLNEMLEKGLNPNRTTYDVV 559



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 109/382 (28%), Positives = 193/382 (50%), Gaps = 10/382 (2%)

Query: 122 EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYV-MRKRGLTPSLVSYNSI 180
           EVFR  +D     S+N   +C  ++ +L + G   G  + VY  M KR + P+L ++N  
Sbjct: 151 EVFRRVQDYGFKLSLN---SCNPLLSALVK-GNETGEMQYVYKEMIKRRIQPNLTTFNIF 206

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESD---LEKARKVLQFMLS 237
           ++GLCK G   +A  ++E+   +G+ P+  TY  L++G C +     + +A  +L+ ML+
Sbjct: 207 INGLCKAGKLNKAEDVIEDIKAWGFSPNIVTYNTLIDGHCKKGSAGKMYRADAILKEMLA 266

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
            K        N  +   C  +N     N    M +   +P+++T N++ING    G+++E
Sbjct: 267 NKICPNEITFNTLIDGFCKDENVLAAKNAFEEMQRQGLKPNIVTYNSLINGLSNNGKLDE 326

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           A+ + + MV G    P+ VTF  +I G      I+EA  L +  + ++   P  +T+N +
Sbjct: 327 AIALWDKMV-GLGLKPNIVTFNALINGFCKKKMIKEARKL-FDDIAEQDLVPNAITFNTM 384

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 417
           +    +   +EE   + N ML  G+  + +TY  +I GLC +  +  AK+  +++     
Sbjct: 385 IDAFCKAGMMEEGFALHNSMLDEGIFPNVSTYNCLIAGLCRNQNVRAAKKLLNEMENYEL 444

Query: 418 IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQ 477
             D   Y  +I G C+ G+  +A   L E+++ GV PN V YN ++DG C     + A +
Sbjct: 445 KADVVTYNILIGGWCKDGEPSKAEKLLGEMLNVGVKPNHVTYNTLMDGYCMEGNLKAALK 504

Query: 478 ILREMRKNGLNPDAVTWRILDK 499
           +  +M K G   + VT+ +L K
Sbjct: 505 VRTQMEKEGKRANVVTYNVLIK 526



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 96/387 (24%), Positives = 185/387 (47%), Gaps = 8/387 (2%)

Query: 8   SRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTY 67
           +  GE   ++ +M  R   PN+ ++   I+G C+ G+++ A  V ++++  G  PN +TY
Sbjct: 179 NETGEMQYVYKEMIKRRIQPNLTTFNIFINGLCKAGKLNKAEDVIEDIKAWGFSPNIVTY 238

Query: 68  SVLVRGVLRTRDVERANVLMFKLWERMKE--EEDLSVNNAAFANLVDSLCREGYVNEVFR 125
           + L+ G  +     +    M++    +KE     +  N   F  L+D  C++  V     
Sbjct: 239 NTLIDGHCKKGSAGK----MYRADAILKEMLANKICPNEITFNTLIDGFCKDENVLAAKN 294

Query: 126 IAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLC 185
             E+M +            +I+ L  +G+   A  +   M   GL P++V++N++++G C
Sbjct: 295 AFEEMQRQGLKPNIVTYNSLINGLSNNGKLDEAIALWDKMVGLGLKPNIVTFNALINGFC 354

Query: 186 KHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTR 245
           K      A +L ++  +   +P+  T+  +++  C    +E+   +   ML +       
Sbjct: 355 KKKMIKEARKLFDDIAEQDLVPNAITFNTMIDAFCKAGMMEEGFALHNSMLDEGIFPNVS 414

Query: 246 ICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM 305
             N  +  LC  +N      +L  M   + + DV+T N +I G+CK G   +A K+L +M
Sbjct: 415 TYNCLIAGLCRNQNVRAAKKLLNEMENYELKADVVTYNILIGGWCKDGEPSKAEKLLGEM 474

Query: 306 VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLR 365
           +      P+ VT+ T++ G    G ++ AL +  Q M + G    +VTYN +++G  +  
Sbjct: 475 L-NVGVKPNHVTYNTLMDGYCMEGNLKAALKVRTQ-MEKEGKRANVVTYNVLIKGFCKTG 532

Query: 366 RVEEAKEVFNCMLGIGVVADSTTYAIV 392
           ++E+A  + N ML  G+  + TTY +V
Sbjct: 533 KLEDANRLLNEMLEKGLNPNRTTYDVV 559



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 92/361 (25%), Positives = 173/361 (47%), Gaps = 12/361 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYK---VFDEMRH 57
           ++ LC   ++ +A  +  D+K+ G  PN+V+Y TLI G+C+ G     Y+   +  EM  
Sbjct: 207 INGLCKAGKLNKAEDVIEDIKAWGFSPNIVTYNTLIDGHCKKGSAGKMYRADAILKEMLA 266

Query: 58  CGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCRE 117
             + PN +T++ L+ G  +  +V  A       +E M + + L  N   + +L++ L   
Sbjct: 267 NKICPNEITFNTLIDGFCKDENVLAAK----NAFEEM-QRQGLKPNIVTYNSLINGLSNN 321

Query: 118 GYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
           G ++E   + + M              +I+  C+      A ++   + ++ L P+ +++
Sbjct: 322 GKLDEAIALWDKMVGLGLKPNIVTFNALINGFCKKKMIKEARKLFDDIAEQDLVPNAITF 381

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
           N+++   CK G     + L    +  G  P+  TY  L+ GLC   ++  A+K+L  M +
Sbjct: 382 NTMIDAFCKAGMMEEGFALHNSMLDEGIFPNVSTYNCLIAGLCRNQNVRAAKKLLNEMEN 441

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
            +        NI +   C    P++   +L  ML    +P+ +T NT+++G+C  G ++ 
Sbjct: 442 YELKADVVTYNILIGGWCKDGEPSKAEKLLGEMLNVGVKPNHVTYNTLMDGYCMEGNLKA 501

Query: 298 ALKVLNDM-VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
           ALKV   M   GK    + VT+  +I G    G++++A N L   M ++G +P   TY+ 
Sbjct: 502 ALKVRTQMEKEGK--RANVVTYNVLIKGFCKTGKLEDA-NRLLNEMLEKGLNPNRTTYDV 558

Query: 357 V 357
           V
Sbjct: 559 V 559



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 97/343 (28%), Positives = 167/343 (48%), Gaps = 45/343 (13%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C    V  A   F +M+ +G  PN+V+Y +LI+G    G++D A  ++D+M   G+
Sbjct: 280 IDGFCKDENVLAAKNAFEEMQRQGLKPNIVTYNSLINGLSNNGKLDEAIALWDKMVGLGL 339

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +T++ L+ G  + + ++ A     KL++ +  E+DL  N   F  ++D+ C+ G +
Sbjct: 340 KPNIVTFNALINGFCKKKMIKEAR----KLFDDI-AEQDLVPNAITFNTMIDAFCKAGMM 394

Query: 121 NEVFRIAEDM-PQGKSVN-EEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
            E F +   M  +G   N   + C  +I  LCR+     A +++  M    L   +V+YN
Sbjct: 395 EEGFALHNSMLDEGIFPNVSTYNC--LIAGLCRNQNVRAAKKLLNEMENYELKADVVTYN 452

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
            ++ G CK G   +A +LL E +  G  P+  TY  L++G C E +L+ A KV       
Sbjct: 453 ILIGGWCKDGEPSKAEKLLGEMLNVGVKPNHVTYNTLMDGYCMEGNLKAALKV------- 505

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
               RT+                        M +   + +V+T N +I GFCK G++E+A
Sbjct: 506 ----RTQ------------------------MEKEGKRANVVTYNVLIKGFCKTGKLEDA 537

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQV 341
            ++LN+M+  K   P+  T+  +   +L  G I +    LY +
Sbjct: 538 NRLLNEMLE-KGLNPNRTTYDVVRLEMLEKGFIPDIEGHLYNI 579


>gi|62320494|dbj|BAD95034.1| hypothetical protein [Arabidopsis thaliana]
          Length = 602

 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 117/463 (25%), Positives = 217/463 (46%), Gaps = 8/463 (1%)

Query: 35  LIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERM 94
           + H  CR+G    +  + + M   G  P+ +  + L++G    R++ +A V + ++ E+ 
Sbjct: 95  IFHRSCRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKA-VRVMEILEKF 153

Query: 95  KEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGR 154
            + +       A+  L++  C+   +++  R+ + M       +      MI SLC  G+
Sbjct: 154 GQPDVF-----AYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGK 208

Query: 155 NHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKV 214
              A +V+  +      P++++Y  ++      GG   A +L++E +  G  P   TY  
Sbjct: 209 LDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNT 268

Query: 215 LVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQ 274
           ++ G+C E  +++A ++++ +  K         NI LRAL       E   ++  M   +
Sbjct: 269 IIRGMCKEGMVDRAFEMVRNLELKGSEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEK 328

Query: 275 CQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEA 334
           C P+V+T + +I   C+ G+IEEA+ +L  ++  K   PDA ++  +I      GR+  A
Sbjct: 329 CDPNVVTYSILITTLCRDGKIEEAMNLLK-LMKEKGLTPDAYSYDPLIAAFCREGRLDVA 387

Query: 335 LNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVID 394
           +  L + M   G  P IV YN VL  L +  + ++A E+F  +  +G   +S++Y  +  
Sbjct: 388 IEFL-ETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFS 446

Query: 395 GLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTP 454
            L  S     A     +++      D   Y +MI  LCR G + EA   L ++      P
Sbjct: 447 ALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHP 506

Query: 455 NIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           ++V YN+V+ G CK     +A  +L  M  NG  P+  T+ +L
Sbjct: 507 SVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVL 549



 Score =  157 bits (398), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 102/413 (24%), Positives = 197/413 (47%), Gaps = 7/413 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C ++R+ +A ++   M+S+   P+ V+Y  +I   C  G++D+A KV +++     
Sbjct: 165 INGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNC 224

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P  +TY++L+   +    V+ A  LM ++  R      L  +   +  ++  +C+EG V
Sbjct: 225 QPTVITYTILIEATMLEGGVDEALKLMDEMLSR-----GLKPDMFTYNTIIRGMCKEGMV 279

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +  F +  ++    S  +  +   ++ +L   G+     +++  M      P++V+Y+ +
Sbjct: 280 DRAFEMVRNLELKGSEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSIL 339

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +  LC+ G    A  LL+   + G  P  ++Y  L+   C E  L+ A + L+ M+S   
Sbjct: 340 ITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGC 399

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           +      N  L  LC      + L +   + +  C P+  + NT+ +     G    AL 
Sbjct: 400 LPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALH 459

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           ++ +M++     PD +T+ ++I  L   G + EA  LL   M    + P +VTYN VL G
Sbjct: 460 MILEMMSNGI-DPDEITYNSMISCLCREGMVDEAFELLVD-MRSCEFHPSVVTYNIVLLG 517

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413
             +  R+E+A  V   M+G G   + TTY ++I+G+  +    EA    +D+V
Sbjct: 518 FCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLV 570



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 134/288 (46%), Gaps = 37/288 (12%)

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQC---------------------------- 275
           T++  I+ R+ C   N  E L++L  M++                               
Sbjct: 90  TQMLKIFHRS-CRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVME 148

Query: 276 ------QPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG 329
                 QPDV   N +INGFCKM RI++A +VL+ M +  F +PD VT+  +I  L + G
Sbjct: 149 ILEKFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDF-SPDTVTYNIMIGSLCSRG 207

Query: 330 RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTY 389
           ++  AL +L Q++      P ++TY  ++        V+EA ++ + ML  G+  D  TY
Sbjct: 208 KLDLALKVLNQLLSD-NCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTY 266

Query: 390 AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449
             +I G+C+   +D A     ++    +  D   Y  +++ L   GK  E    + ++  
Sbjct: 267 NTIIRGMCKEGMVDRAFEMVRNLELKGSEPDVISYNILLRALLNQGKWEEGEKLMTKMFS 326

Query: 450 SGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
               PN+V Y+++I   C+     EA  +L+ M++ GL PDA ++  L
Sbjct: 327 EKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPL 374



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 111/216 (51%), Gaps = 3/216 (1%)

Query: 290 CKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSP 349
           C+ G   E+L +L  MV   +  PD +  T +I G   +  I +A+ ++ +++ + G  P
Sbjct: 100 CRSGNYIESLHLLETMVRKGY-NPDVILCTKLIKGFFTLRNIPKAVRVM-EILEKFG-QP 156

Query: 350 GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFW 409
            +  YNA++ G  ++ R+++A  V + M       D+ TY I+I  LC   +LD A +  
Sbjct: 157 DVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVL 216

Query: 410 DDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKL 469
           + ++  +       Y  +I+     G + EA+  + E++  G+ P++  YN +I G CK 
Sbjct: 217 NQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKE 276

Query: 470 SMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
            M   A++++R +   G  PD +++ IL +   N+G
Sbjct: 277 GMVDRAFEMVRNLELKGSEPDVISYNILLRALLNQG 312


>gi|255547043|ref|XP_002514579.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546183|gb|EEF47685.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 840

 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 127/534 (23%), Positives = 243/534 (45%), Gaps = 46/534 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M + C L  V  A   F  M   G +P+  SY  LIHG C  G M  A  + ++M + G+
Sbjct: 288 MSRYCKLGFVDVAKSFFCMMLKHGLLPDAYSYNILIHGLCIAGSMGEALDLKNDMENHGL 347

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEE--EDLSVNNAAFANLVDSLCREG 118
            P+ +TY++L +G        R   L+   W  +++   +  + N   +  L+   C+ G
Sbjct: 348 EPDMVTYNILAKGF-------RLLGLINGAWNIIQKMLIKGPNPNLVTYTVLICGHCQIG 400

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
            V E  ++ ++M          +   ++ SLC+S +   A ++   M   GL P L++Y+
Sbjct: 401 NVEEALKLYKEMISHGFQLSIISSTVLLGSLCKSRQVDVAFKLFCEMEANGLRPDLITYS 460

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
           +++HGLCK G   +A  L E+      +P+   +  ++ GLC +  + +AR    ++++ 
Sbjct: 461 TLIHGLCKQGEVQQAILLYEKMCSNRIIPNSLIHGAILMGLCEKGKISQARMYFDYLITS 520

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
                  + NI +       N  E + +   + +    P ++T N+++ GFC   ++ +A
Sbjct: 521 NLSLDIILYNIMIDGYIKRGNTREAVKLYKQLGEKGISPTIVTFNSLMYGFCINRKLSQA 580

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
            ++L D +      P+AVT+TT++      G +Q  L LL + M  +   P  +TY  V+
Sbjct: 581 RRLL-DTIKLHGLEPNAVTYTTLMNVYCEEGNMQSLLELLSE-MKAKAIGPTHITYTVVI 638

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVW---- 414
           +GL +  +++E+ ++   M  +G+  D  +Y  +I   C++  + +A + +D ++     
Sbjct: 639 KGLCKQWKLQESCQLLEDMDAVGLTPDQVSYNTIIQAFCKARDMRKAFQLYDKMLLHNLE 698

Query: 415 PSNIHDN-------------------------------YVYAAMIKGLCRSGKIHEAVHF 443
           P+++  N                               Y Y  +IK  C  G + +AV +
Sbjct: 699 PTSVTYNILINGFCVYGDLKDADNLLVSLQNRKVNLNKYAYTTIIKAHCAKGDVDKAVVY 758

Query: 444 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
             ++V+ G   +I  Y+ VI   CK  +  EA      M  +G+ PD   + +L
Sbjct: 759 FRQMVEKGFEVSIRDYSAVIGRLCKRCLVTEAKYFFCMMLSDGVCPDQDLFEVL 812



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 125/511 (24%), Positives = 228/511 (44%), Gaps = 17/511 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC  SR  +A   F D + +   P+VVS+ T++  YC+ G +DVA   F  M   G+
Sbjct: 253 VDGLCRQSRFQDAVLFFQDTEGKEFQPSVVSFNTIMSRYCKLGFVDVAKSFFCMMLKHGL 312

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           LP++ +Y++L+ G+     +  A      L   M E   L  +   +  L       G +
Sbjct: 313 LPDAYSYNILIHGLCIAGSMGEA----LDLKNDM-ENHGLEPDMVTYNILAKGFRLLGLI 367

Query: 121 NEVFRIAEDM----PQGKSVNEE-FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLV 175
           N  + I + M    P    V      CGH     C+ G    A ++   M   G   S++
Sbjct: 368 NGAWNIIQKMLIKGPNPNLVTYTVLICGH-----CQIGNVEEALKLYKEMISHGFQLSII 422

Query: 176 SYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM 235
           S   ++  LCK      A++L  E    G  P   TY  L+ GLC + ++++A  + + M
Sbjct: 423 SSTVLLGSLCKSRQVDVAFKLFCEMEANGLRPDLITYSTLIHGLCKQGEVQQAILLYEKM 482

Query: 236 LSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 295
            S + +  + I    L  LC     ++      +++ +    D+I  N +I+G+ K G  
Sbjct: 483 CSNRIIPNSLIHGAILMGLCEKGKISQARMYFDYLITSNLSLDIILYNIMIDGYIKRGNT 542

Query: 296 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN 355
            EA+K L   +  K  +P  VTF ++++G     ++ +A  LL   +   G  P  VTY 
Sbjct: 543 REAVK-LYKQLGEKGISPTIVTFNSLMYGFCINRKLSQARRLL-DTIKLHGLEPNAVTYT 600

Query: 356 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP 415
            ++        ++   E+ + M    +     TY +VI GLC+  +L E+ +  +D+   
Sbjct: 601 TLMNVYCEEGNMQSLLELLSEMKAKAIGPTHITYTVVIKGLCKQWKLQESCQLLEDMDAV 660

Query: 416 SNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREA 475
               D   Y  +I+  C++  + +A     +++   + P  V YN++I+G C     ++A
Sbjct: 661 GLTPDQVSYNTIIQAFCKARDMRKAFQLYDKMLLHNLEPTSVTYNILINGFCVYGDLKDA 720

Query: 476 YQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
             +L  ++   +N +   +  + K H  +G+
Sbjct: 721 DNLLVSLQNRKVNLNKYAYTTIIKAHCAKGD 751



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 97/386 (25%), Positives = 187/386 (48%), Gaps = 2/386 (0%)

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           N ++ +  ++    +   E+    ++D LCR  R   A         +   PS+VS+N+I
Sbjct: 228 NIMWDVYNEIKVSGTPQSEYTSSIVVDGLCRQSRFQDAVLFFQDTEGKEFQPSVVSFNTI 287

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +   CK G    A       ++ G LP  ++Y +L+ GLC    + +A  +   M +   
Sbjct: 288 MSRYCKLGFVDVAKSFFCMMLKHGLLPDAYSYNILIHGLCIAGSMGEALDLKNDMENHGL 347

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                  NI  +   L+       N++  ML     P+++T   +I G C++G +EEALK
Sbjct: 348 EPDMVTYNILAKGFRLLGLINGAWNIIQKMLIKGPNPNLVTYTVLICGHCQIGNVEEALK 407

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +  +M++  F    ++  +T++ G L   R  +    L+  M   G  P ++TY+ ++ G
Sbjct: 408 LYKEMISHGFQL--SIISSTVLLGSLCKSRQVDVAFKLFCEMEANGLRPDLITYSTLIHG 465

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L +   V++A  ++  M    ++ +S  +  ++ GLCE  ++ +A+ ++D ++  +   D
Sbjct: 466 LCKQGEVQQAILLYEKMCSNRIIPNSLIHGAILMGLCEKGKISQARMYFDYLITSNLSLD 525

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
             +Y  MI G  + G   EAV    +L + G++P IV +N ++ G C      +A ++L 
Sbjct: 526 IILYNIMIDGYIKRGNTREAVKLYKQLGEKGISPTIVTFNSLMYGFCINRKLSQARRLLD 585

Query: 481 EMRKNGLNPDAVTWRILDKLHGNRGN 506
            ++ +GL P+AVT+  L  ++   GN
Sbjct: 586 TIKLHGLEPNAVTYTTLMNVYCEEGN 611



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 118/485 (24%), Positives = 223/485 (45%), Gaps = 48/485 (9%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C +  V EA KL+ +M S G   +++S T L+   C++ ++DVA+K+F EM   G+ P+ 
Sbjct: 397 CQIGNVEEALKLYKEMISHGFQLSIISSTVLLGSLCKSRQVDVAFKLFCEMEANGLRPDL 456

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           +TYS L+ G+ +  +V++A +    L+E+M     +  N+     ++  LC +G +++  
Sbjct: 457 ITYSTLIHGLCKQGEVQQAIL----LYEKMCSNRIIP-NSLIHGAILMGLCEKGKISQAR 511

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
              + +       +      MID   + G    A ++   + ++G++P++V++NS+++G 
Sbjct: 512 MYFDYLITSNLSLDIILYNIMIDGYIKRGNTREAVKLYKQLGEKGISPTIVTFNSLMYGF 571

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
           C +    +A +LL+     G  P+  TY  L+   C E +++                  
Sbjct: 572 CINRKLSQARRLLDTIKLHGLEPNAVTYTTLMNVYCEEGNMQ------------------ 613

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
                             LL +L  M      P  IT   VI G CK  +++E+ ++L D
Sbjct: 614 -----------------SLLELLSEMKAKAIGPTHITYTVVIKGLCKQWKLQESCQLLED 656

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
           M A     PD V++ TII        +++A   LY  M      P  VTYN ++ G    
Sbjct: 657 MDAVGL-TPDQVSYNTIIQAFCKARDMRKAFQ-LYDKMLLHNLEPTSVTYNILINGFCVY 714

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV---WPSNIHDN 421
             +++A  +   +    V  +   Y  +I   C    +D+A  ++  +V   +  +I D 
Sbjct: 715 GDLKDADNLLVSLQNRKVNLNKYAYTTIIKAHCAKGDVDKAVVYFRQMVEKGFEVSIRD- 773

Query: 422 YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
             Y+A+I  LC+   + EA +F   ++  GV P+   + V+++   +       +++L E
Sbjct: 774 --YSAVIGRLCKRCLVTEAKYFFCMMLSDGVCPDQDLFEVLLNAFHQCGHLNSEFELLAE 831

Query: 482 MRKNG 486
           M K+G
Sbjct: 832 MIKSG 836



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 104/382 (27%), Positives = 186/382 (48%), Gaps = 40/382 (10%)

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
           RS   H A  V+  M+      S+ +YNS+++ L +H   M  + +  E    G   SE+
Sbjct: 191 RSAMVHDALFVLVKMKDLNFIVSIQTYNSLLYNL-RHSNIM--WDVYNEIKVSGTPQSEY 247

Query: 211 TYKVLVEGLCGESDLEKARKVLQFMLSKK---------------------DVDRTRIC-- 247
           T  ++V+GLC +S  + A    Q    K+                     DV ++  C  
Sbjct: 248 TSSIVVDGLCRQSRFQDAVLFFQDTEGKEFQPSVVSFNTIMSRYCKLGFVDVAKSFFCMM 307

Query: 248 ------------NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 295
                       NI +  LC+  +  E L++   M     +PD++T N +  GF  +G I
Sbjct: 308 LKHGLLPDAYSYNILIHGLCIAGSMGEALDLKNDMENHGLEPDMVTYNILAKGFRLLGLI 367

Query: 296 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN 355
             A  ++  M+  K   P+ VT+T +I G   +G ++EAL  LY+ M   G+   I++  
Sbjct: 368 NGAWNIIQKMLI-KGPNPNLVTYTVLICGHCQIGNVEEALK-LYKEMISHGFQLSIISST 425

Query: 356 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP 415
            +L  L + R+V+ A ++F  M   G+  D  TY+ +I GLC+  ++ +A   ++ +   
Sbjct: 426 VLLGSLCKSRQVDVAFKLFCEMEANGLRPDLITYSTLIHGLCKQGEVQQAILLYEKMCSN 485

Query: 416 SNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREA 475
             I ++ ++ A++ GLC  GKI +A  +   L+ S ++ +I+ YN++IDG  K    REA
Sbjct: 486 RIIPNSLIHGAILMGLCEKGKISQARMYFDYLITSNLSLDIILYNIMIDGYIKRGNTREA 545

Query: 476 YQILREMRKNGLNPDAVTWRIL 497
            ++ +++ + G++P  VT+  L
Sbjct: 546 VKLYKQLGEKGISPTIVTFNSL 567



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 96/404 (23%), Positives = 198/404 (49%), Gaps = 7/404 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +  LC   +V  A KLF +M++ G  P++++Y+TLIHG C+ GE+  A  ++++M    +
Sbjct: 428 LGSLCKSRQVDVAFKLFCEMEANGLRPDLITYSTLIHGLCKQGEVQQAILLYEKMCSNRI 487

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +PNSL +  ++ G+      E+  +   +++       +LS++   +  ++D   + G  
Sbjct: 488 IPNSLIHGAILMGL-----CEKGKISQARMYFDYLITSNLSLDIILYNIMIDGYIKRGNT 542

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E  ++ + + +            ++   C + +   A R++  ++  GL P+ V+Y ++
Sbjct: 543 REAVKLYKQLGEKGISPTIVTFNSLMYGFCINRKLSQARRLLDTIKLHGLEPNAVTYTTL 602

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++  C+ G      +LL E       P+  TY V+++GLC +  L+++ ++L+ M +   
Sbjct: 603 MNVYCEEGNMQSLLELLSEMKAKAIGPTHITYTVVIKGLCKQWKLQESCQLLEDMDAVGL 662

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                  N  ++A C  ++  +   +   ML    +P  +T N +INGFC  G +++A  
Sbjct: 663 TPDQVSYNTIIQAFCKARDMRKAFQLYDKMLLHNLEPTSVTYNILINGFCVYGDLKDADN 722

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +L  +   K    +   +TTII      G + +A+ + ++ M ++G+   I  Y+AV+  
Sbjct: 723 LLVSLQNRK-VNLNKYAYTTIIKAHCAKGDVDKAV-VYFRQMVEKGFEVSIRDYSAVIGR 780

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 404
           L +   V EAK  F  ML  GV  D   + ++++   +   L+ 
Sbjct: 781 LCKRCLVTEAKYFFCMMLSDGVCPDQDLFEVLLNAFHQCGHLNS 824



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 82/173 (47%), Gaps = 12/173 (6%)

Query: 331 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYA 390
           + +AL +L + M    +   I TYN++L   + LR      +V+N +   G      T +
Sbjct: 195 VHDALFVLVK-MKDLNFIVSIQTYNSLL---YNLRHSNIMWDVYNEIKVSGTPQSEYTSS 250

Query: 391 IVIDGLCESNQLDEAKRFWDDI----VWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE 446
           IV+DGLC  ++  +A  F+ D       PS +  N     ++   C+ G +  A  F   
Sbjct: 251 IVVDGLCRQSRFQDAVLFFQDTEGKEFQPSVVSFN----TIMSRYCKLGFVDVAKSFFCM 306

Query: 447 LVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
           ++  G+ P+   YN++I G C      EA  +  +M  +GL PD VT+ IL K
Sbjct: 307 MLKHGLLPDAYSYNILIHGLCIAGSMGEALDLKNDMENHGLEPDMVTYNILAK 359


>gi|224138172|ref|XP_002326536.1| predicted protein [Populus trichocarpa]
 gi|222833858|gb|EEE72335.1| predicted protein [Populus trichocarpa]
          Length = 697

 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 119/497 (23%), Positives = 224/497 (45%), Gaps = 17/497 (3%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTG-----EMDVAYKVFDEMRHCGVLPN 63
           ++     LF D+K+ G  PNV +YT +I+ YC+       +M+ A  + +EM   G  P 
Sbjct: 165 KLEAVRSLFDDLKNSGPSPNVYTYTIMINFYCKERHGQNIDMEQASLILEEMEEKGENPT 224

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKE--EEDLSVNNAAFANLVDSLCREGYVN 121
            +TY V + G+ R   +E A       W ++++    +  +N   +  L+   C++G  +
Sbjct: 225 VVTYGVYIHGLCRVGSIEDA-------WNKIQDLRSSNQPLNIYCYNALIQGFCQKGRPD 277

Query: 122 EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
           E  ++ E+M       + ++   ++++ C  G       ++  M      P LV   S++
Sbjct: 278 EALKLLEEMKDEGISPDIYSYSILVNAFCTEGDIESGMNLIQEMEHCNKKPPLVCCTSVL 337

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
            GL   G          E    GY     +Y  L+ G     +++ A  ++  M     V
Sbjct: 338 MGLRTKGLVNDCLNFFHELSAKGYKHDLISYSTLIHGFLKGHNVKSANNLVHEMRKNGLV 397

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
               I    +R  C      E L     MLQ   QPD+IT N +++ +C  G+ EEAL  
Sbjct: 398 PDYIIYISLIREYCRKGCLKEALKNFYTMLQDGLQPDIITCNHIVDQYCSRGQFEEALIY 457

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
           +N M   +   P++ T++ II  L     +++A  +L  VM +    P ++ Y  ++ G 
Sbjct: 458 INQM-KDQNILPNSYTYSVIINWLCKYQAVEKAWEVL-PVMFKDNIFPSVIHYTTIMDGY 515

Query: 362 FR-LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
            +  +   +A +++  M  +G   D+ T  +++D   +  ++ +A   + ++       D
Sbjct: 516 AKQFKNPMKAWKLYRKMPKLGCKPDNVTLTVLVDMFSKRGKMSKALNLFKEMAEEGLSRD 575

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
            + + A+I G CR G +  A     ++  + VTPN+  Y  ++DG CKL     A  ++ 
Sbjct: 576 EFAFTAIIDGYCRVGNVKRAWSMYKKMKRNNVTPNVKTYTCLVDGFCKLKRLDMATMLID 635

Query: 481 EMRKNGLNPDAVTWRIL 497
           +M++N + PD  T+  L
Sbjct: 636 DMKRNSVTPDVKTYTAL 652



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 112/461 (24%), Positives = 203/461 (44%), Gaps = 16/461 (3%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC +  + +A     D++S     N+  Y  LI G+C+ G  D A K+ +EM+  G+ P+
Sbjct: 235 LCRVGSIEDAWNKIQDLRSSNQPLNIYCYNALIQGFCQKGRPDEALKLLEEMKDEGISPD 294

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             +YS+LV       D+E    L+ ++ E   ++  L        +++  L  +G VN+ 
Sbjct: 295 IYSYSILVNAFCTEGDIESGMNLIQEM-EHCNKKPPL----VCCTSVLMGLRTKGLVNDC 349

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
                ++      ++  +   +I    +      A+ +V+ MRK GL P  + Y S++  
Sbjct: 350 LNFFHELSAKGYKHDLISYSTLIHGFLKGHNVKSANNLVHEMRKNGLVPDYIIYISLIRE 409

Query: 184 LCKHGGCMRA-----YQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
            C+ G C++      Y +L++G+Q   +   H    +V+  C     E+A   +  M  +
Sbjct: 410 YCRKG-CLKEALKNFYTMLQDGLQPDIITCNH----IVDQYCSRGQFEEALIYINQMKDQ 464

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
             +  +   ++ +  LC  +   +   VL  M +    P VI   T+++G+ K  +    
Sbjct: 465 NILPNSYTYSVIINWLCKYQAVEKAWEVLPVMFKDNIFPSVIHYTTIMDGYAKQFKNPMK 524

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
              L   +    C PD VT T ++      G++ +ALNL ++ M + G S     + A++
Sbjct: 525 AWKLYRKMPKLGCKPDNVTLTVLVDMFSKRGKMSKALNL-FKEMAEEGLSRDEFAFTAII 583

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
            G  R+  V+ A  ++  M    V  +  TY  ++DG C+  +LD A    DD+   S  
Sbjct: 584 DGYCRVGNVKRAWSMYKKMKRNNVTPNVKTYTCLVDGFCKLKRLDMATMLIDDMKRNSVT 643

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCY 459
            D   Y A+I G  R   I  A     E+   G  P+ + Y
Sbjct: 644 PDVKTYTALIAGYQRIENIDRAYEVFDEMKKKGTLPDHIAY 684



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 105/497 (21%), Positives = 205/497 (41%), Gaps = 73/497 (14%)

Query: 10  VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSV 69
           + +A  +F   K  G   N+ S   L+       +++    +FD++++ G  PN  TY++
Sbjct: 131 LADAKDVFMQAKKIGVELNISSCNFLLKCLAEGDKLEAVRSLFDDLKNSGPSPNVYTYTI 190

Query: 70  LVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAED 129
           ++    + R                   +++ +  A+                   I E+
Sbjct: 191 MINFYCKER-----------------HGQNIDMEQASL------------------ILEE 215

Query: 130 MPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG 189
           M +          G  I  LCR G    A   +  +R      ++  YN+++ G C+ G 
Sbjct: 216 MEEKGENPTVVTYGVYIHGLCRVGSIEDAWNKIQDLRSSNQPLNIYCYNALIQGFCQKGR 275

Query: 190 CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNI 249
              A +LLEE    G  P  ++Y +LV   C E D+E                       
Sbjct: 276 PDEALKLLEEMKDEGISPDIYSYSILVNAFCTEGDIESG--------------------- 314

Query: 250 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK 309
                         +N++  M     +P ++   +V+ G    G + + L   +++ A  
Sbjct: 315 --------------MNLIQEMEHCNKKPPLVCCTSVLMGLRTKGLVNDCLNFFHELSAKG 360

Query: 310 FCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEE 369
           +   D ++++T+I G L    ++ A NL+++ M + G  P  + Y +++R   R   ++E
Sbjct: 361 Y-KHDLISYSTLIHGFLKGHNVKSANNLVHE-MRKNGLVPDYIIYISLIREYCRKGCLKE 418

Query: 370 AKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIK 429
           A + F  ML  G+  D  T   ++D  C   Q +EA  + + +   + + ++Y Y+ +I 
Sbjct: 419 ALKNFYTMLQDGLQPDIITCNHIVDQYCSRGQFEEALIYINQMKDQNILPNSYTYSVIIN 478

Query: 430 GLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACK-LSMKREAYQILREMRKNGLN 488
            LC+   + +A   L  +    + P+++ Y  ++DG  K      +A+++ R+M K G  
Sbjct: 479 WLCKYQAVEKAWEVLPVMFKDNIFPSVIHYTTIMDGYAKQFKNPMKAWKLYRKMPKLGCK 538

Query: 489 PDAVTWRILDKLHGNRG 505
           PD VT  +L  +   RG
Sbjct: 539 PDNVTLTVLVDMFSKRG 555



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 118/267 (44%), Gaps = 31/267 (11%)

Query: 3   QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           + C    + EA K F+ M   G  P++++   ++  YC  G+ + A    ++M+   +LP
Sbjct: 409 EYCRKGCLKEALKNFYTMLQDGLQPDIITCNHIVDQYCSRGQFEEALIYINQMKDQNILP 468

Query: 63  NSLTYSVLVRGVLRTRDVERA-NVL--MFK--------------------------LWER 93
           NS TYSV++  + + + VE+A  VL  MFK                           W+ 
Sbjct: 469 NSYTYSVIINWLCKYQAVEKAWEVLPVMFKDNIFPSVIHYTTIMDGYAKQFKNPMKAWKL 528

Query: 94  MKEEEDLSV--NNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCR 151
            ++   L    +N     LVD   + G +++   + ++M +     +EFA   +ID  CR
Sbjct: 529 YRKMPKLGCKPDNVTLTVLVDMFSKRGKMSKALNLFKEMAEEGLSRDEFAFTAIIDGYCR 588

Query: 152 SGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHT 211
            G    A  +   M++  +TP++ +Y  +V G CK      A  L+++  +    P   T
Sbjct: 589 VGNVKRAWSMYKKMKRNNVTPNVKTYTCLVDGFCKLKRLDMATMLIDDMKRNSVTPDVKT 648

Query: 212 YKVLVEGLCGESDLEKARKVLQFMLSK 238
           Y  L+ G     ++++A +V   M  K
Sbjct: 649 YTALIAGYQRIENIDRAYEVFDEMKKK 675



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 56/100 (56%), Gaps = 4/100 (4%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C +  V  A  ++  MK     PNV +YT L+ G+C+   +D+A  + D+M+   V
Sbjct: 583 IDGYCRVGNVKRAWSMYKKMKRNNVTPNVKTYTCLVDGFCKLKRLDMATMLIDDMKRNSV 642

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDL 100
            P+  TY+ L+ G  R  +++RA    +++++ MK++  L
Sbjct: 643 TPDVKTYTALIAGYQRIENIDRA----YEVFDEMKKKGTL 678



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 62/256 (24%), Positives = 102/256 (39%), Gaps = 61/256 (23%)

Query: 284 TVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVT--FTTIIFGLLNVGRIQEALNLLYQV 341
           T+++ F   G   EA  +L D+V         V+  F+T +     VGR    L+LL +V
Sbjct: 65  TIVHVFALAGLQREAQYLLTDIVFYYKEENLNVSGLFSTFLDSPECVGRSATVLSLLIKV 124

Query: 342 MPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ 401
                                  + + +AK+VF     IGV  + ++   ++  L E ++
Sbjct: 125 FASN-------------------KMLADAKDVFMQAKKIGVELNISSCNFLLKCLAEGDK 165

Query: 402 LDEAKRFWDDI--------VWPSNIHDNY------------------------------- 422
           L+  +  +DD+        V+   I  N+                               
Sbjct: 166 LEAVRSLFDDLKNSGPSPNVYTYTIMINFYCKERHGQNIDMEQASLILEEMEEKGENPTV 225

Query: 423 -VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
             Y   I GLCR G I +A + + +L  S    NI CYN +I G C+     EA ++L E
Sbjct: 226 VTYGVYIHGLCRVGSIEDAWNKIQDLRSSNQPLNIYCYNALIQGFCQKGRPDEALKLLEE 285

Query: 482 MRKNGLNPDAVTWRIL 497
           M+  G++PD  ++ IL
Sbjct: 286 MKDEGISPDIYSYSIL 301



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 41/74 (55%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C L R+  A  L  DMK     P+V +YT LI GY R   +D AY+VFDEM+  G 
Sbjct: 618 VDGFCKLKRLDMATMLIDDMKRNSVTPDVKTYTALIAGYQRIENIDRAYEVFDEMKKKGT 677

Query: 61  LPNSLTYSVLVRGV 74
           LP+ + Y  L  G 
Sbjct: 678 LPDHIAYLTLGLGA 691


>gi|357507167|ref|XP_003623872.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498887|gb|AES80090.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 539

 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 117/465 (25%), Positives = 227/465 (48%), Gaps = 9/465 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHV-PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCG 59
           +  L  L R      L+  ++S+  + P++++++ LI+ + + G+M  A+ +   +   G
Sbjct: 76  LSTLIKLKRYNAVVSLYTILQSKPTIKPSLITFSILINAFAQLGQMGFAFSLLGNILKMG 135

Query: 60  VLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGY 119
              +    + L++G+     V  A  L+ +  +R         +   +  +++ LC+ G 
Sbjct: 136 FQIDVRILTTLMKGLCLKGRVLEAVSLLHEYVDR-----GFRFDEVCYGTIINGLCKIGK 190

Query: 120 VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
             +  ++   M + +          +ID LC+ G    A  +   M + G+   + SYNS
Sbjct: 191 TRDAIQMFPKMKKIRVYPNLIMYNTVIDGLCKQGLVDEACGLCTEMVENGIELDVYSYNS 250

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYL-PSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
           ++HG C  G    A +LL+E +  G + P  +T+ +L++GLC    + +A  V+  M+ +
Sbjct: 251 MIHGFCSVGRFQAAVKLLDEMVVRGKVYPDVYTFNILIDGLCKLGRVSEAYNVVAVMIKR 310

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
                    N  +   CL  +  E   V   M++    P+VI+  T+ING+CK+  ++EA
Sbjct: 311 GWKPDIVSYNALMNGYCLSGSVGEAKQVFDKMVERTALPNVISYCTLINGYCKVRMVDEA 370

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
           + +L +M   K   PD VT+  ++ GL   GR     +L+ + M   G    ++TYN +L
Sbjct: 371 MVLLTEM-HNKNLVPDTVTYNCLLDGLSKSGRSLYEWDLV-EAMRASGQPADLITYNVLL 428

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
              F+  + ++A  +F  ++ IG+  +  TY I++DGLC+S +L  AK  +  +      
Sbjct: 429 DDYFKHEKFDKALALFQHIIEIGISPNIRTYNILLDGLCKSGRLKYAKEIFQLLSAKGCQ 488

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463
            +   Y  MI GLC+ G + EA   LY++V++   PN + ++ ++
Sbjct: 489 PNIRTYNIMIHGLCKEGFLDEAEALLYKMVNNNYLPNYITFDTIV 533



 Score =  151 bits (381), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 114/437 (26%), Positives = 201/437 (45%), Gaps = 47/437 (10%)

Query: 104 NAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVY 163
           N   + L+  L R   V  ++ I +  P  K     F+   +I++  + G+   A  ++ 
Sbjct: 73  NKLLSTLI-KLKRYNAVVSLYTILQSKPTIKPSLITFSI--LINAFAQLGQMGFAFSLLG 129

Query: 164 VMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGES 223
            + K G    +    +++ GLC  G  + A  LL E +  G+   E  Y  ++ GLC   
Sbjct: 130 NILKMGFQIDVRILTTLMKGLCLKGRVLEAVSLLHEYVDRGFRFDEVCYGTIINGLC--- 186

Query: 224 DLEKARKVLQFMLSKKDV---DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVI 280
            + K R  +Q     K +       + N  +  LC      E   +   M++   + DV 
Sbjct: 187 KIGKTRDAIQMFPKMKKIRVYPNLIMYNTVIDGLCKQGLVDEACGLCTEMVENGIELDVY 246

Query: 281 TLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQ 340
           + N++I+GFC +GR + A+K+L++MV      PD  TF  +I GL  +GR+ EA N++  
Sbjct: 247 SYNSMIHGFCSVGRFQAAVKLLDEMVVRGKVYPDVYTFNILIDGLCKLGRVSEAYNVV-A 305

Query: 341 VMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN 400
           VM +RG+ P IV+YNA++ G      V EAK+VF+ M+    + +  +Y  +I+G C+  
Sbjct: 306 VMIKRGWKPDIVSYNALMNGYCLSGSVGEAKQVFDKMVERTALPNVISYCTLINGYCKVR 365

Query: 401 QLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG------------------------- 435
            +DEA     ++   + + D   Y  ++ GL +SG                         
Sbjct: 366 MVDEAMVLLTEMHNKNLVPDTVTYNCLLDGLSKSGRSLYEWDLVEAMRASGQPADLITYN 425

Query: 436 ----------KIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN 485
                     K  +A+     +++ G++PNI  YN+++DG CK    + A +I + +   
Sbjct: 426 VLLDDYFKHEKFDKALALFQHIIEIGISPNIRTYNILLDGLCKSGRLKYAKEIFQLLSAK 485

Query: 486 GLNPDAVTWRILDKLHG 502
           G  P+  T+ I+  +HG
Sbjct: 486 GCQPNIRTYNIM--IHG 500



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 73/254 (28%), Positives = 120/254 (47%), Gaps = 40/254 (15%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC L RV EA+ +   M  RG  P++VSY  L++GYC +G +  A +VFD+M     
Sbjct: 288 IDGLCKLGRVSEAYNVVAVMIKRGWKPDIVSYNALMNGYCLSGSVGEAKQVFDKMVERTA 347

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           LPN ++Y  L+ G  + R V+ A VL+ ++       ++L  +   +  L+D L + G  
Sbjct: 348 LPNVISYCTLINGYCKVRMVDEAMVLLTEM-----HNKNLVPDTVTYNCLLDGLSKSGRS 402

Query: 121 NEVFRIAEDM-PQGKSVN--------------EEFACG-----HMI-------------- 146
              + + E M   G+  +              E+F        H+I              
Sbjct: 403 LYEWDLVEAMRASGQPADLITYNVLLDDYFKHEKFDKALALFQHIIEIGISPNIRTYNIL 462

Query: 147 -DSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY 205
            D LC+SGR   A  +  ++  +G  P++ +YN ++HGLCK G    A  LL + +   Y
Sbjct: 463 LDGLCKSGRLKYAKEIFQLLSAKGCQPNIRTYNIMIHGLCKEGFLDEAEALLYKMVNNNY 522

Query: 206 LPSEHTYKVLVEGL 219
           LP+  T+  +V  +
Sbjct: 523 LPNYITFDTIVRAI 536



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 87/185 (47%), Gaps = 2/185 (1%)

Query: 318 FTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCM 377
           F  ++  L+ + R    ++L   +  +    P ++T++ ++    +L ++  A  +   +
Sbjct: 72  FNKLLSTLIKLKRYNAVVSLYTILQSKPTIKPSLITFSILINAFAQLGQMGFAFSLLGNI 131

Query: 378 LGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKI 437
           L +G   D      ++ GLC   ++ EA     + V      D   Y  +I GLC+ GK 
Sbjct: 132 LKMGFQIDVRILTTLMKGLCLKGRVLEAVSLLHEYVDRGFRFDEVCYGTIINGLCKIGKT 191

Query: 438 HEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            +A+    ++    V PN++ YN VIDG CK  +  EA  +  EM +NG+  D  ++  +
Sbjct: 192 RDAIQMFPKMKKIRVYPNLIMYNTVIDGLCKQGLVDEACGLCTEMVENGIELDVYSYNSM 251

Query: 498 DKLHG 502
             +HG
Sbjct: 252 --IHG 254



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 44/75 (58%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   R+  A ++F  + ++G  PN+ +Y  +IHG C+ G +D A  +  +M +   
Sbjct: 463 LDGLCKSGRLKYAKEIFQLLSAKGCQPNIRTYNIMIHGLCKEGFLDEAEALLYKMVNNNY 522

Query: 61  LPNSLTYSVLVRGVL 75
           LPN +T+  +VR +L
Sbjct: 523 LPNYITFDTIVRAIL 537


>gi|297801450|ref|XP_002868609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314445|gb|EFH44868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 526

 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 119/457 (26%), Positives = 222/457 (48%), Gaps = 45/457 (9%)

Query: 35  LIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERM 94
           L++ +C++ +  +A     ++   G  P+  T++ L+ G      +E A  ++ ++ E M
Sbjct: 112 LMNCFCQSSQPCLASSFLGKLMKLGFEPDIFTFTSLINGFCLGNRIEEAMSMVNQMVE-M 170

Query: 95  KEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGR 154
             + D+ +    +  ++DSLC+ G+V+    +   M       +      +++ LC SGR
Sbjct: 171 GIKPDVVI----YTTIIDSLCKNGHVDNALSLFNQMENYGIRPDVVMYTSLVNGLCNSGR 226

Query: 155 NHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKV 214
              A  ++  M KR + P ++++N+++    K G  + A +L  E IQ    P+  TY  
Sbjct: 227 WRDADLLLRGMMKRKIKPDVITFNALIDAFVKEGKLLDAKELYNEMIQMSIAPNIFTYTS 286

Query: 215 LVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQ 274
           L+ GLC E  L++AR++   M +K                                    
Sbjct: 287 LINGLCMEGRLDEARQMFYLMETKG----------------------------------- 311

Query: 275 CQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEA 334
           C PDV+   ++INGFCK  ++E+A+K+  +M + K    + +T+TT+I G   VG+   A
Sbjct: 312 CFPDVVAYTSLINGFCKCKKVEDAMKIFYEM-SQKGLTGNTITYTTLIQGFGLVGKPNVA 370

Query: 335 LNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG---IGVVADSTTYAI 391
             + +  M  RG  P I TYN +L  L    +V +A  +F  M      GV  +  TY +
Sbjct: 371 QEV-FGHMVSRGVPPNIRTYNVLLHCLCYNGKVNKALMIFEDMQKREIDGVPPNIRTYNV 429

Query: 392 VIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 451
           ++ GLC + +L++A   + D+           Y  +I+G+C++GK+ +A++    L   G
Sbjct: 430 LLHGLCYNGKLEKALMVFGDMQKRDMDIGIITYTIIIQGMCKAGKVKDALNLFCSLPSKG 489

Query: 452 VTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLN 488
           V PN+V Y  +I G  +  +  EA+ + R+M+++G++
Sbjct: 490 VKPNVVTYTTMISGLFREGLMLEAHVLFRKMKEDGVS 526



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 112/385 (29%), Positives = 194/385 (50%), Gaps = 10/385 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C  +R+ EA  +   M   G  P+VV YTT+I   C+ G +D A  +F++M + G+
Sbjct: 148 INGFCLGNRIEEAMSMVNQMVEMGIKPDVVIYTTIIDSLCKNGHVDNALSLFNQMENYGI 207

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ + Y+ LV G+  +     A++L+  + +R K + D+   NA    L+D+  +EG +
Sbjct: 208 RPDVVMYTSLVNGLCNSGRWRDADLLLRGMMKR-KIKPDVITFNA----LIDAFVKEGKL 262

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +   +  +M Q       F    +I+ LC  GR   A ++ Y+M  +G  P +V+Y S+
Sbjct: 263 LDAKELYNEMIQMSIAPNIFTYTSLINGLCMEGRLDEARQMFYLMETKGCFPDVVAYTSL 322

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++G CK      A ++  E  Q G   +  TY  L++G         A++V   M+S+  
Sbjct: 323 INGFCKCKKVEDAMKIFYEMSQKGLTGNTITYTTLIQGFGLVGKPNVAQEVFGHMVSRGV 382

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQ---PDVITLNTVINGFCKMGRIEE 297
               R  N+ L  LC      + L +   M + +     P++ T N +++G C  G++E+
Sbjct: 383 PPNIRTYNVLLHCLCYNGKVNKALMIFEDMQKREIDGVPPNIRTYNVLLHGLCYNGKLEK 442

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           AL V  DM   +      +T+T II G+   G++++ALN L+  +P +G  P +VTY  +
Sbjct: 443 ALMVFGDM-QKRDMDIGIITYTIIIQGMCKAGKVKDALN-LFCSLPSKGVKPNVVTYTTM 500

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGV 382
           + GLFR   + EA  +F  M   GV
Sbjct: 501 ISGLFREGLMLEAHVLFRKMKEDGV 525



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 115/486 (23%), Positives = 209/486 (43%), Gaps = 86/486 (17%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           +  EA  LF  M     +P+++ +T L++   +  + DV   +   ++  GV        
Sbjct: 51  QFNEALDLFSHMVESRPLPSIIDFTRLLNVIAKMKKFDVVINLCKHLQIMGV-------- 102

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
                   + D+   N+LM    +        S      ++ +  L + G+  ++F    
Sbjct: 103 --------SNDLYTCNLLMNCFCQ--------SSQPCLASSFLGKLMKLGFEPDIFTFTS 146

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
                           +I+  C   R   A  +V  M + G+ P +V Y +I+  LCK+G
Sbjct: 147 ----------------LINGFCLGNRIEEAMSMVNQMVEMGIKPDVVIYTTIIDSLCKNG 190

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
               A  L  +   +G  P    Y  LV GLC                      R R  +
Sbjct: 191 HVDNALSLFNQMENYGIRPDVVMYTSLVNGLCNSG-------------------RWRDAD 231

Query: 249 IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 308
           + LR                 M++ + +PDVIT N +I+ F K G++ +A ++ N+M+  
Sbjct: 232 LLLRG----------------MMKRKIKPDVITFNALIDAFVKEGKLLDAKELYNEMIQM 275

Query: 309 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE 368
              AP+  T+T++I GL   GR+ EA  + Y +M  +G  P +V Y +++ G  + ++VE
Sbjct: 276 SI-APNIFTYTSLINGLCMEGRLDEARQMFY-LMETKGCFPDVVAYTSLINGFCKCKKVE 333

Query: 369 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVW---PSNIHDNYVYA 425
           +A ++F  M   G+  ++ TY  +I G     + + A+  +  +V    P NI     Y 
Sbjct: 334 DAMKIFYEMSQKGLTGNTITYTTLIQGFGLVGKPNVAQEVFGHMVSRGVPPNIR---TYN 390

Query: 426 AMIKGLCRSGKIHEAVHFLYELVD---SGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
            ++  LC +GK+++A+    ++      GV PNI  YNV++ G C      +A  +  +M
Sbjct: 391 VLLHCLCYNGKVNKALMIFEDMQKREIDGVPPNIRTYNVLLHGLCYNGKLEKALMVFGDM 450

Query: 483 RKNGLN 488
           +K  ++
Sbjct: 451 QKRDMD 456



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 82/268 (30%), Positives = 134/268 (50%), Gaps = 5/268 (1%)

Query: 230 KVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGF 289
           K LQ M    D+     CN+ +   C    P    + L  +++   +PD+ T  ++INGF
Sbjct: 95  KHLQIMGVSNDL---YTCNLLMNCFCQSSQPCLASSFLGKLMKLGFEPDIFTFTSLINGF 151

Query: 290 CKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSP 349
           C   RIEEA+ ++N MV      PD V +TTII  L   G +  AL+L  Q M   G  P
Sbjct: 152 CLGNRIEEAMSMVNQMVEMGI-KPDVVIYTTIIDSLCKNGHVDNALSLFNQ-MENYGIRP 209

Query: 350 GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFW 409
            +V Y +++ GL    R  +A  +   M+   +  D  T+  +ID   +  +L +AK  +
Sbjct: 210 DVVMYTSLVNGLCNSGRWRDADLLLRGMMKRKIKPDVITFNALIDAFVKEGKLLDAKELY 269

Query: 410 DDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKL 469
           ++++  S   + + Y ++I GLC  G++ EA    Y +   G  P++V Y  +I+G CK 
Sbjct: 270 NEMIQMSIAPNIFTYTSLINGLCMEGRLDEARQMFYLMETKGCFPDVVAYTSLINGFCKC 329

Query: 470 SMKREAYQILREMRKNGLNPDAVTWRIL 497
               +A +I  EM + GL  + +T+  L
Sbjct: 330 KKVEDAMKIFYEMSQKGLTGNTITYTTL 357



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 88/337 (26%), Positives = 161/337 (47%), Gaps = 7/337 (2%)

Query: 169 GLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKA 228
           G++  L + N +++  C+      A   L + ++ G+ P   T+  L+ G C  + +E+A
Sbjct: 101 GVSNDLYTCNLLMNCFCQSSQPCLASSFLGKLMKLGFEPDIFTFTSLINGFCLGNRIEEA 160

Query: 229 RKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVING 288
             ++  M+         I    + +LC   +    L++   M     +PDV+   +++NG
Sbjct: 161 MSMVNQMVEMGIKPDVVIYTTIIDSLCKNGHVDNALSLFNQMENYGIRPDVVMYTSLVNG 220

Query: 289 FCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYS 348
            C  GR  +A  +L  M+  K   PD +TF  +I   +  G++ +A  L Y  M Q   +
Sbjct: 221 LCNSGRWRDADLLLRGMMKRKI-KPDVITFNALIDAFVKEGKLLDAKEL-YNEMIQMSIA 278

Query: 349 PGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRF 408
           P I TY +++ GL    R++EA+++F  M   G   D   Y  +I+G C+  ++++A + 
Sbjct: 279 PNIFTYTSLINGLCMEGRLDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVEDAMKI 338

Query: 409 WDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACK 468
           + ++       +   Y  +I+G    GK + A      +V  GV PNI  YNV++   C 
Sbjct: 339 FYEMSQKGLTGNTITYTTLIQGFGLVGKPNVAQEVFGHMVSRGVPPNIRTYNVLLHCLCY 398

Query: 469 LSMKREAYQILREMRK---NGLNPDAVTWRILDKLHG 502
                +A  I  +M+K   +G+ P+  T+ +L  LHG
Sbjct: 399 NGKVNKALMIFEDMQKREIDGVPPNIRTYNVL--LHG 433


>gi|326531238|dbj|BAK04970.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 660

 Score =  175 bits (443), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 122/478 (25%), Positives = 225/478 (47%), Gaps = 7/478 (1%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           ++S+G   +   Y  L+ GY R G+ D     FDEM   G     + Y+  + GVL    
Sbjct: 146 VRSQGVALHRSLYRILLSGYVRAGKFDSVIGTFDEMVMSGCREFGIDYNRYI-GVL---- 200

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
           ++     + + +  M   + L +    ++  + +LC+   +  V  +  DM +     + 
Sbjct: 201 IKNCCFDLVEKYYGMALSKGLCLTPFTYSRWISALCQSNRIELVEELLADMDRFGFSPDI 260

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
           +AC   ID LC+  R H A ++V  MR +G  P +V+Y ++V  LC +     A  L EE
Sbjct: 261 WACNIYIDCLCKQNRLHDALQMVEKMRGKGTIPDVVTYTTVVGCLCNNKRFSEAVGLWEE 320

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
            ++ G  P       L+ GLC  S +E+A ++   MLS        I N  +       +
Sbjct: 321 MVKMGLKPDVVACGALIFGLCKNSKVEEAFELASRMLSLNIELSVSIYNALISGFWRAGS 380

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
             +   ++ FM    C+P V+T N ++N +C +G +E+A  ++  M       PD  ++ 
Sbjct: 381 IDKAYTIISFMRTNGCEPGVVTYNILLNHYCTIGMMEKAENLITKMETSG-VNPDRYSYN 439

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
            ++ GL    ++ +A   +   M   G+   IV+ N ++    ++++V+ A E+F  M  
Sbjct: 440 QLLKGLCKTHQLDKAFAFVSDHMEVGGFCD-IVSCNILIDAFCKVKKVKSALELFKEMDY 498

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
            G+ AD+ TY  +I+GL      + A+  ++ ++      +  +Y  M+  LC+ G +  
Sbjct: 499 KGMQADAVTYGTLINGLFSVGYYNLAEELFEQMLKAQIDPNVNLYNIMLHHLCKVGDLKR 558

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           A      ++   + P+IV YN +I    K S   EA  + ++MR  G+ PD++T++ L
Sbjct: 559 AQKIFLHMIQKEILPDIVTYNTLIYWLGKNSRAMEALDLFKDMRTKGVEPDSLTFKYL 616



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 113/434 (26%), Positives = 191/434 (44%), Gaps = 13/434 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +  LC  +R+    +L  DM   G  P++ +    I   C+   +  A ++ ++MR  G 
Sbjct: 232 ISALCQSNRIELVEELLADMDRFGFSPDIWACNIYIDCLCKQNRLHDALQMVEKMRGKGT 291

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P+ +TY+ +V  +   +    A      LWE M +   L  +  A   L+  LC+   V
Sbjct: 292 IPDVVTYTTVVGCLCNNKRFSEA----VGLWEEMVKM-GLKPDVVACGALIFGLCKNSKV 346

Query: 121 NEVFRIAEDMPQGKSVNEEFACG---HMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
            E F +A  M    S+N E +      +I    R+G    A  ++  MR  G  P +V+Y
Sbjct: 347 EEAFELASRML---SLNIELSVSIYNALISGFWRAGSIDKAYTIISFMRTNGCEPGVVTY 403

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
           N +++  C  G   +A  L+ +    G  P  ++Y  L++GLC    L+KA   +   + 
Sbjct: 404 NILLNHYCTIGMMEKAENLITKMETSGVNPDRYSYNQLLKGLCKTHQLDKAFAFVSDHME 463

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
                    CNI + A C +K     L +   M     Q D +T  T+ING   +G    
Sbjct: 464 VGGFCDIVSCNILIDAFCKVKKVKSALELFKEMDYKGMQADAVTYGTLINGLFSVGYYNL 523

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           A ++   M+  +   P+   +  ++  L  VG ++ A  +    M Q+   P IVTYN +
Sbjct: 524 AEELFEQMLKAQI-DPNVNLYNIMLHHLCKVGDLKRAQKIFLH-MIQKEILPDIVTYNTL 581

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 417
           +  L +  R  EA ++F  M   GV  DS T+  +I+GL +  +   A   W+ ++    
Sbjct: 582 IYWLGKNSRAMEALDLFKDMRTKGVEPDSLTFKYLINGLLDEGRSTLAYEVWEYMMENGI 641

Query: 418 IHDNYVYAAMIKGL 431
           I D  V   +I  L
Sbjct: 642 ILDREVSERLISVL 655



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 101/409 (24%), Positives = 170/409 (41%), Gaps = 45/409 (11%)

Query: 92  ERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCR 151
           ER+  E D  V N     L DS   E  V   +  AE  P     + +FA  +++  L  
Sbjct: 79  ERLDIELDPFVVNLVVRGLSDS---ETAV-RFYWWAESRPGFD--HSQFAIAYIVSLLFV 132

Query: 152 SGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHT 211
            G     S  +  +R +G+      Y  ++ G  + G         +E +  G       
Sbjct: 133 DGNFALLSEFLGTVRSQGVALHRSLYRILLSGYVRAGKFDSVIGTFDEMVMSGCREFGID 192

Query: 212 YKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN-VLVFM 270
           Y   +  L      +   K     LSK         + ++ ALC   N  EL+  +L  M
Sbjct: 193 YNRYIGVLIKNCCFDLVEKYYGMALSKGLCLTPFTYSRWISALCQ-SNRIELVEELLADM 251

Query: 271 LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR 330
            +    PD+   N  I+  CK  R+ +AL+++  M  GK   PD VT+TT++  L N  R
Sbjct: 252 DRFGFSPDIWACNIYIDCLCKQNRLHDALQMVEKM-RGKGTIPDVVTYTTVVGCLCNNKR 310

Query: 331 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYA 390
             EA+ L ++ M + G  P +V   A++ GL +  +VEEA E+ + ML + +    +   
Sbjct: 311 FSEAVGL-WEEMVKMGLKPDVVACGALIFGLCKNSKVEEAFELASRMLSLNIELSVS--- 366

Query: 391 IVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 450
                                           +Y A+I G  R+G I +A   +  +  +
Sbjct: 367 --------------------------------IYNALISGFWRAGSIDKAYTIISFMRTN 394

Query: 451 GVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
           G  P +V YN++++  C + M  +A  ++ +M  +G+NPD  ++  L K
Sbjct: 395 GCEPGVVTYNILLNHYCTIGMMEKAENLITKMETSGVNPDRYSYNQLLK 443


>gi|356522850|ref|XP_003530056.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Glycine max]
          Length = 545

 Score =  175 bits (443), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 120/476 (25%), Positives = 228/476 (47%), Gaps = 59/476 (12%)

Query: 27  PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVL 86
           P+  +   LI+ +C  G++++A+ V  ++   G  P+++T + L++G+     V++A   
Sbjct: 96  PDFFTLNILINCFCHLGQINLAFSVLSKILKWGYQPDTVTLTTLIKGLCLKGQVKKALHF 155

Query: 87  MFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMI 146
             KL       +   ++  ++  L++ +C+ G      ++   +    +         +I
Sbjct: 156 HDKLLA-----QGFRLDQVSYGTLINGVCKIGETRAAIQLLRRIDGRLTEPNVVMYNTII 210

Query: 147 DSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL 206
           D LC+      A  +   M  +G++ ++V+Y++I+HG C  G    A   L E +     
Sbjct: 211 DCLCKRKLVSEACNLFSEMSVKGISANVVTYSAIIHGFCIVGKLTEALGFLNEMVLKAIN 270

Query: 207 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 266
           P  + Y  LV+ L  E  +++A+                                   NV
Sbjct: 271 PDVYIYNTLVDALHKEGKVKEAK-----------------------------------NV 295

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
           L  +++T  +P+VIT NT+I+G+ K   +  A+ ++          PD  ++  +I  L 
Sbjct: 296 LAVIVKTCLKPNVITYNTLIDGYAK--HVFNAVGLMG-------VTPDVWSYNIMINRLC 346

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
            + R++EALNL Y+ M Q+   P  VTYN+++ GL +  R+  A ++ + M   G  A+ 
Sbjct: 347 KIKRVEEALNL-YKEMHQKNMVPNTVTYNSLIDGLCKSGRISYAWDLIDEMHDRGHHANV 405

Query: 387 TTYAIVIDGLCESNQLDEA----KRFWDDIVWPSNIHDNYVYAAMIKGL-CRSGKIHEAV 441
            TY  +I+GLC++ QLD+A     +  D  + P    D Y    ++ GL C+  ++  A 
Sbjct: 406 ITYNSLINGLCKNGQLDKAIALINKMKDQGIQP----DMYTLNILLHGLLCKGKRLKNAQ 461

Query: 442 HFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
               +L+D G  PN+  YN++I G CK  +  EAY +  +M  +G +P+A+T++I+
Sbjct: 462 GLFQDLLDKGYHPNVYTYNIIIYGHCKEGLLDEAYALQSKMEDSGCSPNAITFKII 517



 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 108/396 (27%), Positives = 198/396 (50%), Gaps = 12/396 (3%)

Query: 107 FANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMR 166
           F  ++DS  +  +   V  ++  +       + F    +I+  C  G+ + A  V+  + 
Sbjct: 66  FNKILDSFAKMKHYPTVVSLSRRLELKAIQPDFFTLNILINCFCHLGQINLAFSVLSKIL 125

Query: 167 KRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLE 226
           K G  P  V+  +++ GLC  G   +A    ++ +  G+   + +Y  L+ G+C   +  
Sbjct: 126 KWGYQPDTVTLTTLIKGLCLKGQVKKALHFHDKLLAQGFRLDQVSYGTLINGVCKIGETR 185

Query: 227 KARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVI 286
            A ++L+ +  +       + N  +  LC  K  +E  N+   M       +V+T + +I
Sbjct: 186 AAIQLLRRIDGRLTEPNVVMYNTIIDCLCKRKLVSEACNLFSEMSVKGISANVVTYSAII 245

Query: 287 NGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
           +GFC +G++ EAL  LN+MV  K   PD   + T++  L   G+++EA N+L  V+ +  
Sbjct: 246 HGFCIVGKLTEALGFLNEMVL-KAINPDVYIYNTLVDALHKEGKVKEAKNVL-AVIVKTC 303

Query: 347 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
             P ++TYN ++ G         AK VFN +  +GV  D  +Y I+I+ LC+  +++EA 
Sbjct: 304 LKPNVITYNTLIDGY--------AKHVFNAVGLMGVTPDVWSYNIMINRLCKIKRVEEAL 355

Query: 407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466
             + ++   + + +   Y ++I GLC+SG+I  A   + E+ D G   N++ YN +I+G 
Sbjct: 356 NLYKEMHQKNMVPNTVTYNSLIDGLCKSGRISYAWDLIDEMHDRGHHANVITYNSLINGL 415

Query: 467 CKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
           CK     +A  ++ +M+  G+ PD  T  IL  LHG
Sbjct: 416 CKNGQLDKAIALINKMKDQGIQPDMYTLNIL--LHG 449



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 105/445 (23%), Positives = 201/445 (45%), Gaps = 49/445 (11%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C L ++  A  +   +   G+ P+ V+ TTLI G C  G++  A    D++   G   +
Sbjct: 108 FCHLGQINLAFSVLSKILKWGYQPDTVTLTTLIKGLCLKGQVKKALHFHDKLLAQGFRLD 167

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            ++Y  L+ GV +  +   A  L+ ++  R+ E      N   +  ++D LC+   V+E 
Sbjct: 168 QVSYGTLINGVCKIGETRAAIQLLRRIDGRLTEP-----NVVMYNTIIDCLCKRKLVSEA 222

Query: 124 FRIAEDMP-QGKSVN----------------------------------EEFACGHMIDS 148
             +  +M  +G S N                                  + +    ++D+
Sbjct: 223 CNLFSEMSVKGISANVVTYSAIIHGFCIVGKLTEALGFLNEMVLKAINPDVYIYNTLVDA 282

Query: 149 LCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPS 208
           L + G+   A  V+ V+ K  L P++++YN+++ G  KH     A  L+      G  P 
Sbjct: 283 LHKEGKVKEAKNVLAVIVKTCLKPNVITYNTLIDGYAKH--VFNAVGLM------GVTPD 334

Query: 209 EHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLV 268
             +Y +++  LC    +E+A  + + M  K  V  T   N  +  LC     +   +++ 
Sbjct: 335 VWSYNIMINRLCKIKRVEEALNLYKEMHQKNMVPNTVTYNSLIDGLCKSGRISYAWDLID 394

Query: 269 FMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNV 328
            M       +VIT N++ING CK G++++A+ ++N M   +   PD  T   ++ GLL  
Sbjct: 395 EMHDRGHHANVITYNSLINGLCKNGQLDKAIALINKM-KDQGIQPDMYTLNILLHGLLCK 453

Query: 329 GRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTT 388
           G+  +    L+Q +  +GY P + TYN ++ G  +   ++EA  + + M   G   ++ T
Sbjct: 454 GKRLKNAQGLFQDLLDKGYHPNVYTYNIIIYGHCKEGLLDEAYALQSKMEDSGCSPNAIT 513

Query: 389 YAIVIDGLCESNQLDEAKRFWDDIV 413
           + I+I  L E  + D+A++   +++
Sbjct: 514 FKIIICALLEKGETDKAEKLLCEMI 538



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 99/369 (26%), Positives = 164/369 (44%), Gaps = 60/369 (16%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    V EA  LF +M  +G   NVV+Y+ +IHG+C  G++  A    +EM    +
Sbjct: 210 IDCLCKRKLVSEACNLFSEMSVKGISANVVTYSAIIHGFCIVGKLTEALGFLNEMVLKAI 269

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVN-----------NA---- 105
            P+   Y+ LV  + +   V+ A  ++  + +   +   ++ N           NA    
Sbjct: 270 NPDVYIYNTLVDALHKEGKVKEAKNVLAVIVKTCLKPNVITYNTLIDGYAKHVFNAVGLM 329

Query: 106 -------AFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGA 158
                  ++  +++ LC+   V E   + ++M Q   V        +ID LC+SGR   A
Sbjct: 330 GVTPDVWSYNIMINRLCKIKRVEEALNLYKEMHQKNMVPNTVTYNSLIDGLCKSGRISYA 389

Query: 159 SRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEG 218
             ++  M  RG   ++++YNS+++GLCK+G   +A  L+ +    G  P  +T  +L+ G
Sbjct: 390 WDLIDEMHDRGHHANVITYNSLINGLCKNGQLDKAIALINKMKDQGIQPDMYTLNILLHG 449

Query: 219 -LCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQP 277
            LC    L+ A+ + Q +L K                                      P
Sbjct: 450 LLCKGKRLKNAQGLFQDLLDK-----------------------------------GYHP 474

Query: 278 DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNL 337
           +V T N +I G CK G ++EA  + + M     C+P+A+TF  II  LL  G   +A  L
Sbjct: 475 NVYTYNIIIYGHCKEGLLDEAYALQSKM-EDSGCSPNAITFKIIICALLEKGETDKAEKL 533

Query: 338 LYQVMPQRG 346
           L + M  RG
Sbjct: 534 LCE-MIARG 541



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 115/243 (47%), Gaps = 39/243 (16%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +++LC + RV EA  L+ +M  +  VPN V+Y +LI G C++G +  A+ + DEM   G 
Sbjct: 342 INRLCKIKRVEEALNLYKEMHQKNMVPNTVTYNSLIDGLCKSGRISYAWDLIDEMHDRGH 401

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             N +TY+ L+ G+ +   +++A  L+ K+ ++  + +  ++N      L+  L      
Sbjct: 402 HANVITYNSLINGLCKNGQLDKAIALINKMKDQGIQPDMYTLN-----ILLHGL------ 450

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                                       LC+  R   A  +   +  +G  P++ +YN I
Sbjct: 451 ----------------------------LCKGKRLKNAQGLFQDLLDKGYHPNVYTYNII 482

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++G CK G    AY L  +    G  P+  T+K+++  L  + + +KA K+L  M+++  
Sbjct: 483 IYGHCKEGLLDEAYALQSKMEDSGCSPNAITFKIIICALLEKGETDKAEKLLCEMIARGL 542

Query: 241 VDR 243
           + R
Sbjct: 543 LKR 545


>gi|356547426|ref|XP_003542113.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Glycine max]
          Length = 825

 Score =  175 bits (443), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 119/469 (25%), Positives = 218/469 (46%), Gaps = 21/469 (4%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC L ++ E  +L      +  VP+VV Y  +I GYC+ G++  A +  +E++  GVLP 
Sbjct: 215 LCNLGKIEEGRRLIKHRWGKCCVPHVVFYNMIIDGYCKKGDLQCATRALNELKMKGVLPT 274

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             TY  L+ G  +  + E  + L+ ++  R      L++N   F N++D+  + G V E 
Sbjct: 275 VETYGALINGFCKAGEFEAVDQLLTEMAAR-----GLNMNVKVFNNVIDAEYKYGLVTEA 329

Query: 124 FRIAEDMPQGKSVNEEFACGH-------MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVS 176
             +   M        E  CG        MI+  C+ GR   A  ++   ++RGL P+  S
Sbjct: 330 AEMLRRMA-------EMGCGPDITTYNIMINFSCKGGRIEEADELLEKAKERGLLPNKFS 382

Query: 177 YNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFML 236
           Y  ++H  CK G  ++A  +L    + G      +Y   + G+    +++ A  V + M+
Sbjct: 383 YTPLMHAYCKKGDYVKASGMLFRIAEIGEKSDLVSYGAFIHGVVVAGEIDVALMVREKMM 442

Query: 237 SKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIE 296
            K      +I NI +  LC       +  +L  ML    QPDV    T+I+GF + G ++
Sbjct: 443 EKGVFPDAQIYNILMSGLCKKGRIPAMKLLLSEMLDRNVQPDVYVFATLIDGFIRNGELD 502

Query: 297 EALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
           EA+K+   ++  K   P  V +  +I G    G++ +AL+ L + M    ++P   TY+ 
Sbjct: 503 EAIKIFK-VIIRKGVDPGIVGYNAMIKGFCKFGKMTDALSCLNE-MNSVHHAPDEYTYST 560

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416
           V+ G  +   +  A ++F  M+      +  TY  +I+G C+   +  A++ +  +    
Sbjct: 561 VIDGYVKQHDMSSALKMFGQMMKHKFKPNVITYTSLINGFCKKADMIRAEKVFSGMKSFD 620

Query: 417 NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDG 465
            + +   Y  ++ G  ++GK   A      ++ +G  PN   ++ +I+G
Sbjct: 621 LVPNVVTYTTLVGGFFKAGKPERATSIFELMLMNGCLPNDATFHYLING 669



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 122/479 (25%), Positives = 217/479 (45%), Gaps = 43/479 (8%)

Query: 19  DMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFD---EMRHCGVLPNSLTYSVLVRGVL 75
           +MK++   P   +++ LI  Y  +G +D A ++F    EM +C   P  +  ++L+ G++
Sbjct: 120 NMKAQHLKPTREAFSALILAYAESGSLDRALQLFHTVREMHNC--FPTFVASNLLLNGLV 177

Query: 76  RTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKS 135
           ++  V+ A     +L+++M + +D +                                 +
Sbjct: 178 KSGKVDVA----LQLYDKMLQTDDGT--------------------------------GA 201

Query: 136 VNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQ 195
           V + +    M+  LC  G+     R++     +   P +V YN I+ G CK G    A +
Sbjct: 202 VVDNYTTSIMVKGLCNLGKIEEGRRLIKHRWGKCCVPHVVFYNMIIDGYCKKGDLQCATR 261

Query: 196 LLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALC 255
            L E    G LP+  TY  L+ G C   + E   ++L  M ++      ++ N  + A  
Sbjct: 262 ALNELKMKGVLPTVETYGALINGFCKAGEFEAVDQLLTEMAARGLNMNVKVFNNVIDAEY 321

Query: 256 LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA 315
                TE   +L  M +  C PD+ T N +IN  CK GRIEEA ++L +    +   P+ 
Sbjct: 322 KYGLVTEAAEMLRRMAEMGCGPDITTYNIMINFSCKGGRIEEADELL-EKAKERGLLPNK 380

Query: 316 VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN 375
            ++T ++      G   +A  +L+++  + G    +V+Y A + G+     ++ A  V  
Sbjct: 381 FSYTPLMHAYCKKGDYVKASGMLFRI-AEIGEKSDLVSYGAFIHGVVVAGEIDVALMVRE 439

Query: 376 CMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG 435
            M+  GV  D+  Y I++ GLC+  ++   K    +++  +   D YV+A +I G  R+G
Sbjct: 440 KMMEKGVFPDAQIYNILMSGLCKKGRIPAMKLLLSEMLDRNVQPDVYVFATLIDGFIRNG 499

Query: 436 KIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
           ++ EA+     ++  GV P IV YN +I G CK     +A   L EM      PD  T+
Sbjct: 500 ELDEAIKIFKVIIRKGVDPGIVGYNAMIKGFCKFGKMTDALSCLNEMNSVHHAPDEYTY 558



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 108/481 (22%), Positives = 220/481 (45%), Gaps = 23/481 (4%)

Query: 27  PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHC----GVLPNSLTYSVLVRGVLRTRDVER 82
           P  V+   L++G  ++G++DVA +++D+M       G + ++ T S++V+G+     +E 
Sbjct: 164 PTFVASNLLLNGLVKSGKVDVALQLYDKMLQTDDGTGAVVDNYTTSIMVKGLCNLGKIEE 223

Query: 83  ANVLMFKLWERMKEEEDLSVNNAAFANLV-DSLCREGYVNEVFRIAEDMPQGKSVNEEFA 141
              L+   W +        V +  F N++ D  C++G +    R   ++     +     
Sbjct: 224 GRRLIKHRWGK------CCVPHVVFYNMIIDGYCKKGDLQCATRALNELKMKGVLPTVET 277

Query: 142 CGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGI 201
            G +I+  C++G      +++  M  RGL  ++  +N+++    K+G    A ++L    
Sbjct: 278 YGALINGFCKAGEFEAVDQLLTEMAARGLNMNVKVFNNVIDAEYKYGLVTEAAEMLRRMA 337

Query: 202 QFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIY-----LRALCL 256
           + G  P   TY +++   C    +E+A ++L+     K  +R  + N +     + A C 
Sbjct: 338 EMGCGPDITTYNIMINFSCKGGRIEEADELLE-----KAKERGLLPNKFSYTPLMHAYCK 392

Query: 257 IKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAV 316
             +  +   +L  + +   + D+++    I+G    G I+ AL V   M+  K   PDA 
Sbjct: 393 KGDYVKASGMLFRIAEIGEKSDLVSYGAFIHGVVVAGEIDVALMVREKMME-KGVFPDAQ 451

Query: 317 TFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNC 376
            +  ++ GL   GRI  A+ LL   M  R   P +  +  ++ G  R   ++EA ++F  
Sbjct: 452 IYNILMSGLCKKGRI-PAMKLLLSEMLDRNVQPDVYVFATLIDGFIRNGELDEAIKIFKV 510

Query: 377 MLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGK 436
           ++  GV      Y  +I G C+  ++ +A    +++    +  D Y Y+ +I G  +   
Sbjct: 511 IIRKGVDPGIVGYNAMIKGFCKFGKMTDALSCLNEMNSVHHAPDEYTYSTVIDGYVKQHD 570

Query: 437 IHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRI 496
           +  A+    +++     PN++ Y  +I+G CK +    A ++   M+   L P+ VT+  
Sbjct: 571 MSSALKMFGQMMKHKFKPNVITYTSLINGFCKKADMIRAEKVFSGMKSFDLVPNVVTYTT 630

Query: 497 L 497
           L
Sbjct: 631 L 631



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 116/506 (22%), Positives = 208/506 (41%), Gaps = 91/506 (17%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M   C      +A  + F +   G   ++VSY   IHG    GE+DVA  V ++M   GV
Sbjct: 387 MHAYCKKGDYVKASGMLFRIAEIGEKSDLVSYGAFIHGVVVAGEIDVALMVREKMMEKGV 446

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P++  Y++L+ G+ +   +    +L+ ++ +R     ++  +   FA L+D   R G +
Sbjct: 447 FPDAQIYNILMSGLCKKGRIPAMKLLLSEMLDR-----NVQPDVYVFATLIDGFIRNGEL 501

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E  +I +                                   V+ ++G+ P +V YN++
Sbjct: 502 DEAIKIFK-----------------------------------VIIRKGVDPGIVGYNAM 526

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G CK G    A   L E     + P E+TY  +++G   + D+  A K+   M+  K 
Sbjct: 527 IKGFCKFGKMTDALSCLNEMNSVHHAPDEYTYSTVIDGYVKQHDMSSALKMFGQMMKHK- 585

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                              +P+VIT  ++INGFCK   +  A K
Sbjct: 586 ----------------------------------FKPNVITYTSLINGFCKKADMIRAEK 611

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           V + M +     P+ VT+TT++ G    G+ + A + ++++M   G  P   T++ ++ G
Sbjct: 612 VFSGMKSFDL-VPNVVTYTTLVGGFFKAGKPERATS-IFELMLMNGCLPNDATFHYLING 669

Query: 361 LFR------LRRVEEAKE--------VFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
           L        L   +++KE         F  ML  G       Y  VI  LC+   +D A+
Sbjct: 670 LTNTATSPVLIEEKDSKENERSLILDFFTMMLLDGWDQVIAAYNSVIVCLCKHGTVDTAQ 729

Query: 407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466
                ++    + D+  + A++ GLC  GK  E  + +   ++       V Y++ +D  
Sbjct: 730 LLLTKMLTKGFLIDSVCFTALLHGLCHKGKSKEWRNIISCDLNKIELQTAVKYSLTLDKY 789

Query: 467 CKLSMKREAYQILREMRKNGLNPDAV 492
                  EA  IL+ + ++    D V
Sbjct: 790 LYQGRLSEASVILQTLVEDSKFSDQV 815



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 95/404 (23%), Positives = 175/404 (43%), Gaps = 46/404 (11%)

Query: 101 SVNNAAFANLVDSLCREGYVNEVFRIAEDMPQG--KSVNEEFACGHMIDSLCRSGRNHGA 158
           S++  A ++L+  L       E+  + E+M     K   E F+   +I +   SG    A
Sbjct: 92  SLDGVAHSSLLKLLASYRVFPEIELVLENMKAQHLKPTREAFSA--LILAYAESGSLDRA 149

Query: 159 SRVVYVMRK-RGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQF----GYLPSEHTYK 213
            ++ + +R+     P+ V+ N +++GL K G    A QL ++ +Q     G +   +T  
Sbjct: 150 LQLFHTVREMHNCFPTFVASNLLLNGLVKSGKVDVALQLYDKMLQTDDGTGAVVDNYTTS 209

Query: 214 VLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQT 273
           ++V+GLC    +E+ R++++    K                C                  
Sbjct: 210 IMVKGLCNLGKIEEGRRLIKHRWGK----------------C------------------ 235

Query: 274 QCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQE 333
            C P V+  N +I+G+CK G ++ A + LN++   K   P   T+  +I G    G   E
Sbjct: 236 -CVPHVVFYNMIIDGYCKKGDLQCATRALNELKM-KGVLPTVETYGALINGFCKAGEF-E 292

Query: 334 ALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVI 393
           A++ L   M  RG +  +  +N V+   ++   V EA E+   M  +G   D TTY I+I
Sbjct: 293 AVDQLLTEMAARGLNMNVKVFNNVIDAEYKYGLVTEAAEMLRRMAEMGCGPDITTYNIMI 352

Query: 394 DGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVT 453
           +  C+  +++EA    +       + + + Y  ++   C+ G   +A   L+ + + G  
Sbjct: 353 NFSCKGGRIEEADELLEKAKERGLLPNKFSYTPLMHAYCKKGDYVKASGMLFRIAEIGEK 412

Query: 454 PNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            ++V Y   I G         A  +  +M + G+ PDA  + IL
Sbjct: 413 SDLVSYGAFIHGVVVAGEIDVALMVREKMMEKGVFPDAQIYNIL 456



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/258 (24%), Positives = 121/258 (46%), Gaps = 13/258 (5%)

Query: 252 RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA---G 308
           RAL L     E+ N         C P  +  N ++NG  K G+++ AL++ + M+    G
Sbjct: 148 RALQLFHTVREMHN---------CFPTFVASNLLLNGLVKSGKVDVALQLYDKMLQTDDG 198

Query: 309 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE 368
                D  T + ++ GL N+G+I+E   L+      +   P +V YN ++ G  +   ++
Sbjct: 199 TGAVVDNYTTSIMVKGLCNLGKIEEGRRLIKHRW-GKCCVPHVVFYNMIIDGYCKKGDLQ 257

Query: 369 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI 428
            A    N +   GV+    TY  +I+G C++ + +   +   ++       +  V+  +I
Sbjct: 258 CATRALNELKMKGVLPTVETYGALINGFCKAGEFEAVDQLLTEMAARGLNMNVKVFNNVI 317

Query: 429 KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLN 488
               + G + EA   L  + + G  P+I  YN++I+ +CK     EA ++L + ++ GL 
Sbjct: 318 DAEYKYGLVTEAAEMLRRMAEMGCGPDITTYNIMINFSCKGGRIEEADELLEKAKERGLL 377

Query: 489 PDAVTWRILDKLHGNRGN 506
           P+  ++  L   +  +G+
Sbjct: 378 PNKFSYTPLMHAYCKKGD 395


>gi|449455685|ref|XP_004145582.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score =  175 bits (443), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 134/548 (24%), Positives = 241/548 (43%), Gaps = 57/548 (10%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGH----------------------------------- 25
           +D LC   ++  A +LF  MK+ GH                                   
Sbjct: 304 IDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGY 363

Query: 26  VPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANV 85
           +P+VV++T L+   C+  + D A+  FD MR  G+LPN  TY+ L+ G+LR   +E A  
Sbjct: 364 MPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDA-- 421

Query: 86  LMFKLWERMKEEEDLSVNNAAFAN--LVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACG 143
              KL   M   E + V   A+     +D   + G   +     E M     V    AC 
Sbjct: 422 --LKLLGTM---ESVGVQPTAYTYNIFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACN 476

Query: 144 HMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQF 203
             + SL   GR   A  +   +R+ GL P  V+YN ++    K G    A  LL E I+ 
Sbjct: 477 ASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRN 536

Query: 204 GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTEL 263
           G  P       L++ L     +++A ++   M   K        N  L  L       + 
Sbjct: 537 GCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKA 596

Query: 264 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF 323
           + +   M++ +C P+ I+ NT+++ FCK   +E ALK+ + M     C PD +T+ T+I+
Sbjct: 597 IELFESMIEKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMD-CKPDVLTYNTVIY 655

Query: 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVF-NCMLGIGV 382
           GL+   ++  A    +Q+  ++   P  VT   +L GL +  ++ +A  +  + M  +  
Sbjct: 656 GLIKENKVNHAFWFFHQL--KKSMHPDHVTICTLLPGLVKCGQIGDAISIARDFMYQVRF 713

Query: 383 VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVH 442
             + + +  ++ G     ++D+A  F +++V      ++     +++ LC+    H+   
Sbjct: 714 RVNRSFWEDLMGGTLVEAEMDKAIIFAEELVLNGICREDSFLIPLVRVLCK----HKREL 769

Query: 443 FLYELVDS-----GVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           + Y++ D      G++P +  YN +I    ++    +A+ + ++M+  G  PDA T+ +L
Sbjct: 770 YAYQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNML 829

Query: 498 DKLHGNRG 505
             +HG  G
Sbjct: 830 LAVHGKSG 837



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 127/496 (25%), Positives = 233/496 (46%), Gaps = 20/496 (4%)

Query: 9    RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
            RV +A +LF  M  +   PN +S+ TL+  +C+  E+++A K+F +M      P+ LTY+
Sbjct: 592  RVQKAIELFESMIEKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYN 651

Query: 69   VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
             ++ G+++   V  A       W   + ++ +  ++     L+  L + G + +   IA 
Sbjct: 652  TVIYGLIKENKVNHA------FWFFHQLKKSMHPDHVTICTLLPGLVKCGQIGDAISIAR 705

Query: 129  D-MPQ-----GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
            D M Q      +S  E+   G ++++            V+      G+         +V 
Sbjct: 706  DFMYQVRFRVNRSFWEDLMGGTLVEAEMDKAIIFAEELVL-----NGICREDSFLIPLVR 760

Query: 183  GLCKHGGCMRAYQLLEEGIQ-FGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
             LCKH   + AYQ+ ++  +  G  P+  +Y  L+  L      EKA  + + M +    
Sbjct: 761  VLCKHKRELYAYQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCA 820

Query: 242  DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
                  N+ L         TEL  +   M+  +C+PD IT N VI+   K   +++AL  
Sbjct: 821  PDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDF 880

Query: 302  LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
              D+V+  F  P   T+  +I GL  VGR++EA+ L ++ M   G  P    +N ++ G 
Sbjct: 881  FYDLVSSDF-RPTPRTYGPLIDGLAKVGRLEEAMRL-FEEMSDYGCKPNCAIFNILINGY 938

Query: 362  FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
             ++   E A ++F  M+  G+  D  +Y I++D LC + ++DEA  +++++       D 
Sbjct: 939  GKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDF 998

Query: 422  YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
              Y  +I GL +S ++ EA+    E+ + G+ P++  YN ++       M  +A ++  E
Sbjct: 999  IAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEE 1058

Query: 482  MRKNGLNPDAVTWRIL 497
            ++  GL PD  T+  L
Sbjct: 1059 LQLAGLEPDVFTYNAL 1074



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 117/466 (25%), Positives = 221/466 (47%), Gaps = 8/466 (1%)

Query: 16  LFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVL 75
           L  +M+  G  PNV ++T  I    R G++D AY++F  M   G  P+ +TY+VL+  + 
Sbjct: 249 LLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALC 308

Query: 76  RTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKS 135
               +E A  L  K+     + + +      +  L+D     G ++        M     
Sbjct: 309 NAGQLENAKELFVKMKANGHKPDQV-----IYITLLDKFNDFGDLDTFKEFWSQMEADGY 363

Query: 136 VNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQ 195
           + +      ++D LC++     A     VMRK+G+ P+L +YN+++ GL + G    A +
Sbjct: 364 MPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALK 423

Query: 196 LLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALC 255
           LL      G  P+ +TY + ++      +  KA +  + M +K  V     CN  L +L 
Sbjct: 424 LLGTMESVGVQPTAYTYNIFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLA 483

Query: 256 LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA 315
            +    E   +   + +    PD +T N ++  + K+G+++EA+ +L++M+    C PD 
Sbjct: 484 EMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNG-CEPDV 542

Query: 316 VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN 375
           +   ++I  L   GR+ EA   ++  M     SP +VTYN +L GL +  RV++A E+F 
Sbjct: 543 IVVNSLIDSLYKAGRVDEAWQ-MFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFE 601

Query: 376 CMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG 435
            M+      ++ ++  ++D  C++++++ A + +  +       D   Y  +I GL +  
Sbjct: 602 SMIEKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKEN 661

Query: 436 KIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
           K++ A  F ++L  S + P+ V    ++ G  K     +A  I R+
Sbjct: 662 KVNHAFWFFHQLKKS-MHPDHVTICTLLPGLVKCGQIGDAISIARD 706



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 119/477 (24%), Positives = 211/477 (44%), Gaps = 11/477 (2%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M+  G V N  SY  LIH   ++G    A +V+  M   G+ P+  TYS L+  + + RD
Sbjct: 183 MRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRD 242

Query: 80  VERANVLMFKLWERMKEEEDLSV--NNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVN 137
            E   VL       +KE EDL +  N   F   +  L R G ++E + I   M       
Sbjct: 243 SEMVMVL-------LKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGP 295

Query: 138 EEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLL 197
           +      +ID+LC +G+   A  +   M+  G  P  V Y +++      G      +  
Sbjct: 296 DLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFW 355

Query: 198 EEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLI 257
            +    GY+P   T+ +LV+ LC   D ++A      M  +  +      N  +  L   
Sbjct: 356 SQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRA 415

Query: 258 KNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVT 317
               + L +L  M     QP   T N  I+ F K G   +A++    M A K   P+ V 
Sbjct: 416 GRIEDALKLLGTMESVGVQPTAYTYNIFIDYFGKSGETGKAVETFEKMKA-KGIVPNIVA 474

Query: 318 FTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCM 377
               ++ L  +GR++EA   ++  + + G +P  VTYN +++   ++ +V+EA  + + M
Sbjct: 475 CNASLYSLAEMGRLREA-KTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEM 533

Query: 378 LGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKI 437
           +  G   D      +ID L ++ ++DEA + +D +           Y  ++ GL + G++
Sbjct: 534 IRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRV 593

Query: 438 HEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
            +A+     +++   +PN + +N ++D  CK      A ++  +M      PD +T+
Sbjct: 594 QKAIELFESMIEKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTY 650



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 128/571 (22%), Positives = 242/571 (42%), Gaps = 66/571 (11%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC      EA   F  M+ +G +PN+ +Y TLI G  R G ++ A K+   M   GV
Sbjct: 374 VDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLGTMESVGV 433

Query: 61  LPNSLTYSVLVRGVLRTRDVERA-------------------NVLMFKLWE--RMKE--- 96
            P + TY++ +    ++ +  +A                   N  ++ L E  R++E   
Sbjct: 434 QPTAYTYNIFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKT 493

Query: 97  ------EEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC 150
                 E  L+ ++  +  ++    + G V+E   +  +M +     +      +IDSL 
Sbjct: 494 MFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLY 553

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
           ++GR   A ++   M+   L+P++V+YN+++ GL K G   +A +L E  I+    P+  
Sbjct: 554 KAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIEKKCSPNTI 613

Query: 211 TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM 270
           ++  L++  C   ++E A K+   M            N  +  L + +N           
Sbjct: 614 SFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGL-IKENKVNHAFWFFHQ 672

Query: 271 LQTQCQPDVITLNTVINGFCKMGRIEEALKV----------------LNDMVAGKFCAPD 314
           L+    PD +T+ T++ G  K G+I +A+ +                  D++ G     +
Sbjct: 673 LKKSMHPDHVTICTLLPGLVKCGQIGDAISIARDFMYQVRFRVNRSFWEDLMGGTLVEAE 732

Query: 315 ---AVTFT------------TIIFGLLNV----GRIQEALNLLYQVMPQRGYSPGIVTYN 355
              A+ F             + +  L+ V     R   A  +  +   + G SP + +YN
Sbjct: 733 MDKAIIFAEELVLNGICREDSFLIPLVRVLCKHKRELYAYQIFDKFTKKLGISPTLASYN 792

Query: 356 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP 415
            ++  L  +   E+A ++F  M  +G   D+ T+ +++    +S ++ E    + +++  
Sbjct: 793 CLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISR 852

Query: 416 SNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREA 475
               D   Y  +I  L +S  + +A+ F Y+LV S   P    Y  +IDG  K+    EA
Sbjct: 853 RCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEA 912

Query: 476 YQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
            ++  EM   G  P+   + IL   +G  G+
Sbjct: 913 MRLFEEMSDYGCKPNCAIFNILINGYGKIGD 943



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 95/345 (27%), Positives = 155/345 (44%), Gaps = 10/345 (2%)

Query: 165 MRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESD 224
           M   GL P++ ++   +  L + G    AY++       G  P   TY VL++ LC    
Sbjct: 253 MEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQ 312

Query: 225 LEKARKVLQFMLSK-KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQ---PDVI 280
           LE A+++   M +     D+     IY+  L    +  +L     F  Q +     PDV+
Sbjct: 313 LENAKELFVKMKANGHKPDQV----IYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVV 368

Query: 281 TLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQ 340
           T   +++  CK    +EA     D++  +   P+  T+ T+I GLL  GRI++AL LL  
Sbjct: 369 TFTILVDVLCKARDFDEAFATF-DVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLL-G 426

Query: 341 VMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN 400
            M   G  P   TYN  +    +     +A E F  M   G+V +       +  L E  
Sbjct: 427 TMESVGVQPTAYTYNIFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMG 486

Query: 401 QLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYN 460
           +L EAK  ++ +       D+  Y  M+K   + G++ EAV+ L E++ +G  P+++  N
Sbjct: 487 RLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVN 546

Query: 461 VVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
            +ID   K     EA+Q+   M+   L+P  VT+  L    G  G
Sbjct: 547 SLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEG 591



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 101/406 (24%), Positives = 179/406 (44%), Gaps = 47/406 (11%)

Query: 141 ACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEG 200
            C  M++ L    +    + V   M+K+ +   L +Y +I   L   GG  +   +L + 
Sbjct: 124 TCNFMLEFLRVHDKVEDMAAVFEFMQKKIIRRDLDTYLTIFKALSIRGGLRQMTTVLNKM 183

Query: 201 IQFGYLPSEHTYKVLV-----EGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALC 255
            + G++ + ++Y  L+      G CGE     A +V + M+S+      +  +  + AL 
Sbjct: 184 RKAGFVLNAYSYNGLIHLLIQSGFCGE-----ALEVYRRMVSEGLKPSLKTYSALMVALG 238

Query: 256 LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA 315
             ++   ++ +L  M     +P+V T    I    + G+I+EA ++   M   + C PD 
Sbjct: 239 KKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRM-DDEGCGPDL 297

Query: 316 VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN 375
           VT+T +I  L N G+++ A  L  + M   G+ P  V Y  +L        ++  KE ++
Sbjct: 298 VTYTVLIDALCNAGQLENAKELFVK-MKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWS 356

Query: 376 CMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG 435
            M   G + D  T+ I++D LC++   DEA   +D +     + + + Y  +I GL R+G
Sbjct: 357 QMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAG 416

Query: 436 KIHEAVHFLYELVDSGVTPNIVCYNVVIDG---------------------------ACK 468
           +I +A+  L  +   GV P    YN+ ID                            AC 
Sbjct: 417 RIEDALKLLGTMESVGVQPTAYTYNIFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACN 476

Query: 469 LSMK--------REAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
            S+         REA  +   +R+NGL PD+VT+ ++ K +   G 
Sbjct: 477 ASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQ 522



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 91/359 (25%), Positives = 163/359 (45%), Gaps = 12/359 (3%)

Query: 35   LIHGYCRTGEMDVAYKVFDEM-RHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWER 93
            L+   C+      AY++FD+  +  G+ P   +Y+ L+  +L     E+A       W+ 
Sbjct: 758  LVRVLCKHKRELYAYQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKA-------WDL 810

Query: 94   MKEEEDLSVNNAAFA-NLVDSL-CREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCR 151
             K+ +++     AF  N++ ++  + G + E+F + ++M   +   +      +I SL +
Sbjct: 811  FKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAK 870

Query: 152  SGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHT 211
            S     A    Y +      P+  +Y  ++ GL K G    A +L EE   +G  P+   
Sbjct: 871  SNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAI 930

Query: 212  YKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFML 271
            + +L+ G     D E A ++ + M+++      +   I +  LCL     E L     + 
Sbjct: 931  FNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELK 990

Query: 272  QTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRI 331
             T   PD I  N +ING  K  R+EEAL + N+M   +   PD  T+ +++  L   G +
Sbjct: 991  STGLDPDFIAYNRIINGLGKSQRMEEALALYNEM-RNRGIVPDLYTYNSLMLNLGLAGMV 1049

Query: 332  QEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYA 390
            ++A   +Y+ +   G  P + TYNA++RG       E A  V+  M+  G   +  TYA
Sbjct: 1050 EQA-KRMYEELQLAGLEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPNIGTYA 1107



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 86/338 (25%), Positives = 149/338 (44%), Gaps = 9/338 (2%)

Query: 164 VMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQF-GYLPSEHTYKVLVEGLCGE 222
           VM  +G T   VS + ++  L      +RA        +F   L +  T   ++E L   
Sbjct: 76  VMVVKGKTEIRVSEDEVLGVLKSMTDPIRALSYFYSISEFPTVLHTTETCNFMLEFLRVH 135

Query: 223 SDLEKARKVLQFMLSKKDVDRTRICNIYL---RALCLIKNPTELLNVLVFMLQTQCQPDV 279
             +E    V +FM  +K + R R  + YL   +AL +     ++  VL  M +     + 
Sbjct: 136 DKVEDMAAVFEFM--QKKIIR-RDLDTYLTIFKALSIRGGLRQMTTVLNKMRKAGFVLNA 192

Query: 280 ITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLY 339
            + N +I+   + G   EAL+V   MV+     P   T++ ++  L    R  E + +L 
Sbjct: 193 YSYNGLIHLLIQSGFCGEALEVYRRMVSEGL-KPSLKTYSALMVAL-GKKRDSEMVMVLL 250

Query: 340 QVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCES 399
           + M   G  P + T+   +R L R  +++EA E+F  M   G   D  TY ++ID LC +
Sbjct: 251 KEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNA 310

Query: 400 NQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCY 459
            QL+ AK  +  +    +  D  +Y  ++      G +     F  ++   G  P++V +
Sbjct: 311 GQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTF 370

Query: 460 NVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            +++D  CK     EA+     MRK G+ P+  T+  L
Sbjct: 371 TILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTL 408



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 109/236 (46%), Gaps = 5/236 (2%)

Query: 1    MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
            +  L   + + +A   F+D+ S    P   +Y  LI G  + G ++ A ++F+EM   G 
Sbjct: 865  ISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGC 924

Query: 61   LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             PN   +++L+ G  +  D E A     +L++RM   E +  +  ++  LVD LC  G V
Sbjct: 925  KPNCAIFNILINGYGKIGDTETA----CQLFKRMV-NEGIRPDLKSYTILVDCLCLAGRV 979

Query: 121  NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +E      ++       +  A   +I+ L +S R   A  +   MR RG+ P L +YNS+
Sbjct: 980  DEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSL 1039

Query: 181  VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFML 236
            +  L   G   +A ++ EE    G  P   TY  L+ G     + E A  V + M+
Sbjct: 1040 MLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNALIRGYSLSENPEHAYTVYKNMM 1095


>gi|108862162|gb|ABA95747.2| Cytochrome P450 family protein [Oryza sativa Japonica Group]
          Length = 1595

 Score =  175 bits (443), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 128/480 (26%), Positives = 219/480 (45%), Gaps = 6/480 (1%)

Query: 27   PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVL 86
            P  ++++TL+    R+   D        M   G  P       LV        + +A   
Sbjct: 870  PTPLAHSTLLRLLARSRRFDAVDDTLQSMSLAGAAPTRACLGALVAAYADAGMLGKAT-- 927

Query: 87   MFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMI 146
              ++ ER++E+            L+  L  +   ++  ++ ++M    S  + ++   ++
Sbjct: 928  --EMCERVREQYGSLPEVTHCNRLLKLLVEQRRWDDARKLYDEMLGKDSGADNYSTCVLV 985

Query: 147  DSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL 206
              LC   R     +++      G  P +V YN ++ G C+ G   R   LL E    G+L
Sbjct: 986  RGLCLERRVEEGLKLIEARWGAGCIPHVVFYNVLIDGYCRRGDMGRGLLLLGEMETNGFL 1045

Query: 207  PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 266
            P+  TY  L+  L  + DLEK   +   M  +      +I N  + ALC  ++ T+ + +
Sbjct: 1046 PTLVTYGSLINWLGKKGDLEKIGSLFLEMRKRGFSPNVQIYNSVIDALCNCRSATQAMVI 1105

Query: 267  LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
            L  M  + C PD+IT NT+I G C  G + +A   L + +  +   P+ +++T +I G  
Sbjct: 1106 LKQMFASGCDPDIITFNTLITGLCHEGHVRKAEHFLREAIRREL-NPNQLSYTPLIHGFC 1164

Query: 327  NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
              G +  A +LL ++M  RG++P +VT+ A++ GL    +V EA  V   M    V  D 
Sbjct: 1165 MRGELMVASDLLVEMM-GRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPDV 1223

Query: 387  TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE 446
              Y ++I GLC+   L  AK   ++++  +   D +VYA +I G  RS  + +A      
Sbjct: 1224 NIYNVLISGLCKKRMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSENLGDARKIFEF 1283

Query: 447  LVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
            +   GV P+IV  N +I G C+  M  EA   +  MRK G  PD  T+  +   +  +GN
Sbjct: 1284 MEHKGVCPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKVGCIPDEFTYTTVISGYAKQGN 1343



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 127/494 (25%), Positives = 211/494 (42%), Gaps = 42/494 (8%)

Query: 4    LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            LC   RV E  KL       G +P+VV Y  LI GYCR G+M     +  EM   G LP 
Sbjct: 988  LCLERRVEEGLKLIEARWGAGCIPHVVFYNVLIDGYCRRGDMGRGLLLLGEMETNGFLPT 1047

Query: 64   SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             +TY  L+  + +  D+E+   L  ++ +R       S N   + +++D+LC        
Sbjct: 1048 LVTYGSLINWLGKKGDLEKIGSLFLEMRKR-----GFSPNVQIYNSVIDALCN------- 1095

Query: 124  FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
                                      CRS     A  ++  M   G  P ++++N+++ G
Sbjct: 1096 --------------------------CRSATQ--AMVILKQMFASGCDPDIITFNTLITG 1127

Query: 184  LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            LC  G   +A   L E I+    P++ +Y  L+ G C   +L  A  +L  M+ +     
Sbjct: 1128 LCHEGHVRKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGELMVASDLLVEMMGRGHTPD 1187

Query: 244  TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                   +  L +    +E L V   M + Q  PDV   N +I+G CK   +  A  +L 
Sbjct: 1188 VVTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCKKRMLPAAKNILE 1247

Query: 304  DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            +M+  K   PD   + T+I G +    + +A  + ++ M  +G  P IV+ NA+++G  +
Sbjct: 1248 EMLE-KNVQPDEFVYATLIDGFIRSENLGDARKI-FEFMEHKGVCPDIVSCNAMIKGYCQ 1305

Query: 364  LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
               + EA    + M  +G + D  TY  VI G  +   L+ A R+  D++      +   
Sbjct: 1306 FGMMSEAILCMSNMRKVGCIPDEFTYTTVISGYAKQGNLNGALRWLCDMIKRKCKPNVVT 1365

Query: 424  YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
            Y+++I G C++G    A      +    ++PN+V Y ++I    K      A      M 
Sbjct: 1366 YSSLINGYCKTGDTDSAEGLFANMQAEALSPNVVTYTILIGSLFKKDKVLRAGLYFETML 1425

Query: 484  KNGLNPDAVTWRIL 497
             N  +P+ VT   L
Sbjct: 1426 LNHCSPNDVTLHYL 1439



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 122/509 (23%), Positives = 236/509 (46%), Gaps = 22/509 (4%)

Query: 1    MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
            +D  C    +G    L  +M++ G +P +V+Y +LI+   + G+++    +F EMR  G 
Sbjct: 1020 IDGYCRRGDMGRGLLLLGEMETNGFLPTLVTYGSLINWLGKKGDLEKIGSLFLEMRKRGF 1079

Query: 61   LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             PN   Y+ ++  +   R   +A V++ +++    + + ++ N      L+  LC EG+V
Sbjct: 1080 SPNVQIYNSVIDALCNCRSATQAMVILKQMFASGCDPDIITFN-----TLITGLCHEGHV 1134

Query: 121  NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
             +      +  + +    + +   +I   C  G    AS ++  M  RG TP +V++ ++
Sbjct: 1135 RKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGELMVASDLLVEMMGRGHTPDVVTFGAL 1194

Query: 181  VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
            +HGL   G    A  + E+  +    P  + Y VL+ GLC +  L  A+ +L+ ML K  
Sbjct: 1195 IHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCKKRMLPAAKNILEEMLEKNV 1254

Query: 241  VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                 +    +      +N  +   +  FM      PD+++ N +I G+C+ G + EA+ 
Sbjct: 1255 QPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGVCPDIVSCNAMIKGYCQFGMMSEAIL 1314

Query: 301  VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
             +++M     C PD  T+TT+I G    G +  AL  L   M +R   P +VTY++++ G
Sbjct: 1315 CMSNMRKVG-CIPDEFTYTTVISGYAKQGNLNGALRWLCD-MIKRKCKPNVVTYSSLING 1372

Query: 361  LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
              +    + A+ +F  M    +  +  TY I+I  L + +++  A  +++ ++      +
Sbjct: 1373 YCKTGDTDSAEGLFANMQAEALSPNVVTYTILIGSLFKKDKVLRAGLYFETMLLNHCSPN 1432

Query: 421  NYVYAAMIKGL------------CRSGKIH--EAVHFLY-ELVDSGVTPNIVCYNVVIDG 465
            +     ++ GL            C + ++H  +A+  ++ +LV     P    YN +I  
Sbjct: 1433 DVTLHYLVNGLTSCTPCVINSICCNTSEVHGKDALLVVFKKLVFDIGDPRNSAYNAIIFS 1492

Query: 466  ACKLSMKREAYQILREMRKNGLNPDAVTW 494
             C+ +M REA      M K G  P+ +T+
Sbjct: 1493 LCRHNMLREALDFKNRMAKKGYVPNPITF 1521



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 124/478 (25%), Positives = 207/478 (43%), Gaps = 25/478 (5%)

Query: 7    LSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLT 66
            L ++G    LF +M+ RG  PNV  Y ++I   C       A  +  +M   G  P+ +T
Sbjct: 1064 LEKIG---SLFLEMRKRGFSPNVQIYNSVIDALCNCRSATQAMVILKQMFASGCDPDIIT 1120

Query: 67   YSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRI 126
            ++ L+ G+     V +A   +     R     +L+ N  ++  L+   C  G +     +
Sbjct: 1121 FNTLITGLCHEGHVRKAEHFL-----REAIRRELNPNQLSYTPLIHGFCMRGELMVASDL 1175

Query: 127  AEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK 186
              +M       +    G +I  L  +G+   A  V   M +R + P +  YN ++ GLCK
Sbjct: 1176 LVEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCK 1235

Query: 187  HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRI 246
                  A  +LEE ++    P E  Y  L++G     +L  ARK+ +FM  K        
Sbjct: 1236 KRMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGVCPDIVS 1295

Query: 247  CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV 306
            CN  ++  C     +E +  +  M +  C PD  T  TVI+G+ K G +  AL+ L DM+
Sbjct: 1296 CNAMIKGYCQFGMMSEAILCMSNMRKVGCIPDEFTYTTVISGYAKQGNLNGALRWLCDMI 1355

Query: 307  AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 366
              K C P+ VT++++I G    G    A  L +  M     SP +VTY  ++  LF+  +
Sbjct: 1356 KRK-CKPNVVTYSSLINGYCKTGDTDSAEGL-FANMQAEALSPNVVTYTILIGSLFKKDK 1413

Query: 367  VEEAKEVFNCMLGIGVVADSTTYAIVIDGL------------CESNQL---DEAKRFWDD 411
            V  A   F  ML      +  T   +++GL            C ++++   D     +  
Sbjct: 1414 VLRAGLYFETMLLNHCSPNDVTLHYLVNGLTSCTPCVINSICCNTSEVHGKDALLVVFKK 1473

Query: 412  IVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKL 469
            +V+      N  Y A+I  LCR   + EA+ F   +   G  PN + +  ++ G C +
Sbjct: 1474 LVFDIGDPRNSAYNAIIFSLCRHNMLREALDFKNRMAKKGYVPNPITFLSLLYGFCSV 1531



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 88/370 (23%), Positives = 149/370 (40%), Gaps = 60/370 (16%)

Query: 13   AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVR 72
            A  L  +M  RGH P+VV++  LIHG    G++  A  V ++M    V P+   Y+VL+ 
Sbjct: 1172 ASDLLVEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLIS 1231

Query: 73   GVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQ 132
            G+ + R +  A  ++ ++ E+  + ++       +A L+D   R   + +  +I E M  
Sbjct: 1232 GLCKKRMLPAAKNILEEMLEKNVQPDEF-----VYATLIDGFIRSENLGDARKIFEFMEH 1286

Query: 133  GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMR 192
                 +  +C  MI   C+ G    A   +  MRK G  P   +Y +++ G  K G    
Sbjct: 1287 KGVCPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKVGCIPDEFTYTTVISGYAKQGNLNG 1346

Query: 193  AYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLR 252
            A + L + I+    P+  TY  L+ G C   D + A  +   M ++          I + 
Sbjct: 1347 ALRWLCDMIKRKCKPNVVTYSSLINGYCKTGDTDSAEGLFANMQAEALSPNVVTYTILIG 1406

Query: 253  ALCLIKNPTELLNVLVF--MLQTQCQPDVITLNTVINGF--------------------- 289
            +L   K    L   L F  ML   C P+ +TL+ ++NG                      
Sbjct: 1407 SL--FKKDKVLRAGLYFETMLLNHCSPNDVTLHYLVNGLTSCTPCVINSICCNTSEVHGK 1464

Query: 290  -----------------------------CKMGRIEEALKVLNDMVAGKFCAPDAVTFTT 320
                                         C+   + EAL   N M A K   P+ +TF +
Sbjct: 1465 DALLVVFKKLVFDIGDPRNSAYNAIIFSLCRHNMLREALDFKNRM-AKKGYVPNPITFLS 1523

Query: 321  IIFGLLNVGR 330
            +++G  +VG+
Sbjct: 1524 LLYGFCSVGK 1533



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 76/336 (22%), Positives = 130/336 (38%), Gaps = 55/336 (16%)

Query: 9    RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
            +V EA  +   M  R   P+V  Y  LI G C+   +  A  + +EM    V P+   Y+
Sbjct: 1203 KVSEALIVREKMTERQVFPDVNIYNVLISGLCKKRMLPAAKNILEEMLEKNVQPDEFVYA 1262

Query: 69   VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
             L+ G +R+ ++  A  + F+  E      D+   NA    ++   C+ G ++E      
Sbjct: 1263 TLIDGFIRSENLGDARKI-FEFMEHKGVCPDIVSCNA----MIKGYCQFGMMSEAILCMS 1317

Query: 129  DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
            +M +   + +EF    +I    + G  +GA R +  M KR   P++V+Y+S+++G CK G
Sbjct: 1318 NMRKVGCIPDEFTYTTVISGYAKQGNLNGALRWLCDMIKRKCKPNVVTYSSLINGYCKTG 1377

Query: 189  GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFML----SKKDV--- 241
                A  L          P+  TY +L+  L  +  + +A    + ML    S  DV   
Sbjct: 1378 DTDSAEGLFANMQAEALSPNVVTYTILIGSLFKKDKVLRAGLYFETMLLNHCSPNDVTLH 1437

Query: 242  -------------------------------------------DRTRICNIYLRALCLIK 258
                                                        R    N  + +LC   
Sbjct: 1438 YLVNGLTSCTPCVINSICCNTSEVHGKDALLVVFKKLVFDIGDPRNSAYNAIIFSLCRHN 1497

Query: 259  NPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGR 294
               E L+    M +    P+ IT  +++ GFC +G+
Sbjct: 1498 MLREALDFKNRMAKKGYVPNPITFLSLLYGFCSVGK 1533



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 93/219 (42%), Gaps = 35/219 (15%)

Query: 19   DMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTR 78
            DM  R   PNVV+Y++LI+GYC+TG+ D A  +F  M+   + PN +TY++L+  + +  
Sbjct: 1353 DMIKRKCKPNVVTYSSLINGYCKTGDTDSAEGLFANMQAEALSPNVVTYTILIGSLFKKD 1412

Query: 79   DVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSL--CREGYVNEVFRIAEDMPQGKSV 136
             V RA +     +E M      S N+     LV+ L  C    +N +             
Sbjct: 1413 KVLRAGLY----FETMLLNH-CSPNDVTLHYLVNGLTSCTPCVINSI------------- 1454

Query: 137  NEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLT---PSLVSYNSIVHGLCKHGGCMRA 193
                         C +   HG   ++ V +K       P   +YN+I+  LC+H     A
Sbjct: 1455 ------------CCNTSEVHGKDALLVVFKKLVFDIGDPRNSAYNAIIFSLCRHNMLREA 1502

Query: 194  YQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVL 232
                    + GY+P+  T+  L+ G C        R +L
Sbjct: 1503 LDFKNRMAKKGYVPNPITFLSLLYGFCSVGKSVNWRTIL 1541


>gi|297849166|ref|XP_002892464.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338306|gb|EFH68723.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 555

 Score =  175 bits (443), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 121/450 (26%), Positives = 217/450 (48%), Gaps = 7/450 (1%)

Query: 35  LIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERM 94
           ++H  C  G++  A K+ + M     +P+  + S LVRG+ R   +++A V++     R+
Sbjct: 106 ILHNLCSNGKLTDACKLVEVMARHNQVPHFPSCSNLVRGLARIDQLDKAMVIL-----RI 160

Query: 95  KEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGR 154
                   +   +  ++ +LC++G++     + EDM    S  +      +I  +   G 
Sbjct: 161 MVMSGGVPDTITYNMIIGNLCKKGHIRSALVLLEDMSLSGSPPDVITYNTVIRCMFDHGN 220

Query: 155 NHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKV 214
              A R      + G  P +++Y  +V  +C++ G  RA  +LE+    G  P   TY  
Sbjct: 221 AEQAIRFWKDQLRNGCPPYMITYTVLVELVCRYCGSARAMDVLEDMAVEGCYPDIVTYNS 280

Query: 215 LVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQ 274
           LV   C   +LE+   V+Q +LS      T   N  L +LC  +   E+  +L  M QT 
Sbjct: 281 LVNYNCRRGNLEEVALVIQHILSHGLELNTVTYNTLLHSLCSNEYWDEVEEILNIMYQTS 340

Query: 275 CQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEA 334
             P VIT N +ING CK   +  A+     M+  K C PD VT+ T++  +   G + +A
Sbjct: 341 YCPTVITYNILINGLCKARLLSRAIDFFYQMLEQK-CLPDIVTYNTLLGAMSKEGMVDDA 399

Query: 335 LNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVID 394
           + LL  ++      PG++TYN+V+ GL R   +++A E+++ ML  G+  D  T   +I 
Sbjct: 400 IELL-GLLKSTSCLPGLITYNSVIDGLARKGLMKKALELYHHMLDAGISPDDITRRSLIY 458

Query: 395 GLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTP 454
           G C +N ++EA +   +     N      Y  +I+GLC+  ++  A+  +  ++ SG  P
Sbjct: 459 GFCRANLVEEASQVLKETSNRGNGIRGSTYRLVIQGLCKKREMEMAIEVVEIMLTSGCKP 518

Query: 455 NIVCYNVVIDGACKLSMKREAYQILREMRK 484
           +   Y  ++ G  ++ M  EA Q+ +++ +
Sbjct: 519 DETIYTAIVKGVEEMGMGSEAVQLQKKLTQ 548



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 99/404 (24%), Positives = 186/404 (46%), Gaps = 12/404 (2%)

Query: 97  EEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNH 156
           E D   NN    NL    C  G + +  ++ E M +   V    +C +++  L R  +  
Sbjct: 97  ENDEETNNEILHNL----CSNGKLTDACKLVEVMARHNQVPHFPSCSNLVRGLARIDQLD 152

Query: 157 GASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLV 216
            A  ++ +M   G  P  ++YN I+  LCK G    A  LLE+    G  P   TY  ++
Sbjct: 153 KAMVILRIMVMSGGVPDTITYNMIIGNLCKKGHIRSALVLLEDMSLSGSPPDVITYNTVI 212

Query: 217 EGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQ 276
             +    + E+A +  +  L            + +  +C        ++VL  M    C 
Sbjct: 213 RCMFDHGNAEQAIRFWKDQLRNGCPPYMITYTVLVELVCRYCGSARAMDVLEDMAVEGCY 272

Query: 277 PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLN---VGRIQE 333
           PD++T N+++N  C+ G +EE   V+  +++      + VT+ T++  L +      ++E
Sbjct: 273 PDIVTYNSLVNYNCRRGNLEEVALVIQHILSHGL-ELNTVTYNTLLHSLCSNEYWDEVEE 331

Query: 334 ALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVI 393
            LN++YQ      Y P ++TYN ++ GL + R +  A + F  ML    + D  TY  ++
Sbjct: 332 ILNIMYQT----SYCPTVITYNILINGLCKARLLSRAIDFFYQMLEQKCLPDIVTYNTLL 387

Query: 394 DGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVT 453
             + +   +D+A      +   S +     Y ++I GL R G + +A+   + ++D+G++
Sbjct: 388 GAMSKEGMVDDAIELLGLLKSTSCLPGLITYNSVIDGLARKGLMKKALELYHHMLDAGIS 447

Query: 454 PNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           P+ +    +I G C+ ++  EA Q+L+E    G      T+R++
Sbjct: 448 PDDITRRSLIYGFCRANLVEEASQVLKETSNRGNGIRGSTYRLV 491



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/312 (20%), Positives = 141/312 (45%), Gaps = 20/312 (6%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           CG +R   A  +  DM   G  P++V+Y +L++  CR G ++    V   +   G+  N+
Sbjct: 254 CGSAR---AMDVLEDMAVEGCYPDIVTYNSLVNYNCRRGNLEEVALVIQHILSHGLELNT 310

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNA------AFANLVDSLCREG 118
           +TY+ L+  +              + W+ ++E  ++    +       +  L++ LC+  
Sbjct: 311 VTYNTLLHSLCSN-----------EYWDEVEEILNIMYQTSYCPTVITYNILINGLCKAR 359

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
            ++        M + K + +      ++ ++ + G    A  ++ +++     P L++YN
Sbjct: 360 LLSRAIDFFYQMLEQKCLPDIVTYNTLLGAMSKEGMVDDAIELLGLLKSTSCLPGLITYN 419

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
           S++ GL + G   +A +L    +  G  P + T + L+ G C  + +E+A +VL+   ++
Sbjct: 420 SVIDGLARKGLMKKALELYHHMLDAGISPDDITRRSLIYGFCRANLVEEASQVLKETSNR 479

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
            +  R     + ++ LC  +     + V+  ML + C+PD      ++ G  +MG   EA
Sbjct: 480 GNGIRGSTYRLVIQGLCKKREMEMAIEVVEIMLTSGCKPDETIYTAIVKGVEEMGMGSEA 539

Query: 299 LKVLNDMVAGKF 310
           +++   +   K 
Sbjct: 540 VQLQKKLTQWKL 551



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 95/199 (47%), Gaps = 1/199 (0%)

Query: 308 GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRV 367
           G     D  T   I+  L + G++ +A  L+ +VM +    P   + + ++RGL R+ ++
Sbjct: 93  GPITENDEETNNEILHNLCSNGKLTDACKLV-EVMARHNQVPHFPSCSNLVRGLARIDQL 151

Query: 368 EEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAM 427
           ++A  +   M+  G V D+ TY ++I  LC+   +  A    +D+    +  D   Y  +
Sbjct: 152 DKAMVILRIMVMSGGVPDTITYNMIIGNLCKKGHIRSALVLLEDMSLSGSPPDVITYNTV 211

Query: 428 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
           I+ +   G   +A+ F  + + +G  P ++ Y V+++  C+      A  +L +M   G 
Sbjct: 212 IRCMFDHGNAEQAIRFWKDQLRNGCPPYMITYTVLVELVCRYCGSARAMDVLEDMAVEGC 271

Query: 488 NPDAVTWRILDKLHGNRGN 506
            PD VT+  L   +  RGN
Sbjct: 272 YPDIVTYNSLVNYNCRRGN 290


>gi|334184106|ref|NP_178323.3| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546751|sp|P0C894.1|PP143_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g02150
 gi|330250459|gb|AEC05553.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 761

 Score =  174 bits (442), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 121/495 (24%), Positives = 238/495 (48%), Gaps = 12/495 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           + +   L +  +  + F DM   G  P V +Y  +I   C+ G+++ A  +F+EM+  G+
Sbjct: 234 LHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGL 293

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P+++TY+ ++ G  +   ++   V  F+  + M  E D+   NA    L++  C+ G +
Sbjct: 294 VPDTVTYNSMIDGFGKVGRLDDT-VCFFEEMKDMCCEPDVITYNA----LINCFCKFGKL 348

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                   +M          +   ++D+ C+ G    A +    MR+ GL P+  +Y S+
Sbjct: 349 PIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSL 408

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +   CK G    A++L  E +Q G   +  TY  L++GLC    +++A ++   M +   
Sbjct: 409 IDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGV 468

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           +      N  +      KN    L +L  +     +PD++   T I G C + +IE A  
Sbjct: 469 IPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKV 528

Query: 301 VLNDMVAGKFCA--PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
           V+N+M   K C    +++ +TT++      G   E L+LL + M +      +VT+  ++
Sbjct: 529 VMNEM---KECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDE-MKELDIEVTVVTFCVLI 584

Query: 359 RGLFRLRRVEEAKEVFNCMLG-IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 417
            GL + + V +A + FN +    G+ A++  +  +IDGLC+ NQ++ A   ++ +V    
Sbjct: 585 DGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGL 644

Query: 418 IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQ 477
           + D   Y +++ G  + G + EA+    ++ + G+  +++ Y  ++ G    +  ++A  
Sbjct: 645 VPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARS 704

Query: 478 ILREMRKNGLNPDAV 492
            L EM   G++PD V
Sbjct: 705 FLEEMIGEGIHPDEV 719



 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 117/495 (23%), Positives = 225/495 (45%), Gaps = 8/495 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           L  L  + EA + F  MK     P   S   L+H + + G+ D   + F +M   G  P 
Sbjct: 202 LIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPT 261

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             TY++++  + +  DVE A      L+E MK    L  +   + +++D   + G +++ 
Sbjct: 262 VFTYNIMIDCMCKEGDVEAAR----GLFEEMK-FRGLVPDTVTYNSMIDGFGKVGRLDDT 316

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
               E+M       +      +I+  C+ G+          M+  GL P++VSY+++V  
Sbjct: 317 VCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDA 376

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK G   +A +   +  + G +P+E+TY  L++  C   +L  A ++   ML       
Sbjct: 377 FCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWN 436

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                  +  LC  +   E   +   M      P++ + N +I+GF K   ++ AL++LN
Sbjct: 437 VVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLN 496

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           ++  G+   PD + + T I+GL ++ +I EA  ++   M + G     + Y  ++   F+
Sbjct: 497 EL-KGRGIKPDLLLYGTFIWGLCSLEKI-EAAKVVMNEMKECGIKANSLIYTTLMDAYFK 554

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN-Y 422
                E   + + M  + +     T+ ++IDGLC++  + +A  +++ I     +  N  
Sbjct: 555 SGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAA 614

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
           ++ AMI GLC+  ++  A     ++V  G+ P+   Y  ++DG  K     EA  +  +M
Sbjct: 615 IFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKM 674

Query: 483 RKNGLNPDAVTWRIL 497
            + G+  D + +  L
Sbjct: 675 AEIGMKLDLLAYTSL 689



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 118/496 (23%), Positives = 229/496 (46%), Gaps = 15/496 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D +C    V  A  LF +MK RG VP+ V+Y ++I G+ + G +D     F+EM+    
Sbjct: 269 IDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCC 328

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TY+ L+    +   +     +  + +  MK    L  N  +++ LVD+ C+EG +
Sbjct: 329 EPDVITYNALINCFCKFGKLP----IGLEFYREMKGN-GLKPNVVSYSTLVDAFCKEGMM 383

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +  +   DM +   V  E+    +ID+ C+ G    A R+   M + G+  ++V+Y ++
Sbjct: 384 QQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTAL 443

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GLC       A +L  +    G +P+  +Y  L+ G     ++++A ++L  +  +  
Sbjct: 444 IDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGI 503

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                +   ++  LC ++       V+  M +   + + +   T+++ + K G   E L 
Sbjct: 504 KPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLH 563

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +L++M          VTF  +I GL     + +A++   ++    G       + A++ G
Sbjct: 564 LLDEMKELDI-EVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDG 622

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L +  +VE A  +F  M+  G+V D T Y  ++DG  +   + EA    D +       D
Sbjct: 623 LCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLD 682

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN-IVCYNVV--------IDGACKLSM 471
              Y +++ GL    ++ +A  FL E++  G+ P+ ++C +V+        ID A +L  
Sbjct: 683 LLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPDEVLCISVLKKHYELGCIDEAVELQS 742

Query: 472 KREAYQILREMRKNGL 487
               +Q+L     N L
Sbjct: 743 YLMKHQLLTSDNDNAL 758



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 89/342 (26%), Positives = 165/342 (48%), Gaps = 2/342 (0%)

Query: 165 MRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESD 224
           M++  + P   S N ++H   K G      +  ++ I  G  P+  TY ++++ +C E D
Sbjct: 218 MKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGD 277

Query: 225 LEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNT 284
           +E AR + + M  +  V  T   N  +     +    + +     M    C+PDVIT N 
Sbjct: 278 VEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNA 337

Query: 285 VINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ 344
           +IN FCK G++   L+   +M  G    P+ V+++T++      G +Q+A+   Y  M +
Sbjct: 338 LINCFCKFGKLPIGLEFYREM-KGNGLKPNVVSYSTLVDAFCKEGMMQQAIKF-YVDMRR 395

Query: 345 RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 404
            G  P   TY +++    ++  + +A  + N ML +GV  +  TY  +IDGLC++ ++ E
Sbjct: 396 VGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKE 455

Query: 405 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
           A+  +  +     I +   Y A+I G  ++  +  A+  L EL   G+ P+++ Y   I 
Sbjct: 456 AEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIW 515

Query: 465 GACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           G C L     A  ++ EM++ G+  +++ +  L   +   GN
Sbjct: 516 GLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGN 557



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 139/299 (46%), Gaps = 8/299 (2%)

Query: 206 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 265
           +P    +  L   L     LE+A +    M   +   +TR CN  L     +    ++  
Sbjct: 189 VPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKR 248

Query: 266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKF--CAPDAVTFTTIIF 323
               M+    +P V T N +I+  CK G +E A  +  +M   KF    PD VT+ ++I 
Sbjct: 249 FFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEM---KFRGLVPDTVTYNSMID 305

Query: 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 383
           G   VGR+ + +   ++ M      P ++TYNA++    +  ++    E +  M G G+ 
Sbjct: 306 GFGKVGRLDDTV-CFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLK 364

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
            +  +Y+ ++D  C+   + +A +F+ D+     + + Y Y ++I   C+ G + +A   
Sbjct: 365 PNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRL 424

Query: 444 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
             E++  GV  N+V Y  +IDG C     +EA ++  +M   G+ P+  ++  L  +HG
Sbjct: 425 GNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNAL--IHG 481



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 94/187 (50%), Gaps = 1/187 (0%)

Query: 311 CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEA 370
           C P    F  +   L+++G ++EA+    ++   R + P   + N +L    +L + ++ 
Sbjct: 188 CVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVF-PKTRSCNGLLHRFAKLGKTDDV 246

Query: 371 KEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKG 430
           K  F  M+G G      TY I+ID +C+   ++ A+  ++++ +   + D   Y +MI G
Sbjct: 247 KRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDG 306

Query: 431 LCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD 490
             + G++ + V F  E+ D    P+++ YN +I+  CK        +  REM+ NGL P+
Sbjct: 307 FGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPN 366

Query: 491 AVTWRIL 497
            V++  L
Sbjct: 367 VVSYSTL 373


>gi|242070015|ref|XP_002450284.1| hypothetical protein SORBIDRAFT_05g003220 [Sorghum bicolor]
 gi|241936127|gb|EES09272.1| hypothetical protein SORBIDRAFT_05g003220 [Sorghum bicolor]
          Length = 727

 Score =  174 bits (442), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 133/479 (27%), Positives = 222/479 (46%), Gaps = 18/479 (3%)

Query: 27  PNVVSYTTLIHGYCRTGEMDVAYKVFDEM--RHCGVLPNSLTYSVLVRGVLRTRDVERAN 84
           P +V+Y TL+  + + G  D A  +  EM  +  G L N +TY+V++  + R   +E A 
Sbjct: 241 PTIVTYNTLLDSFLKEGRKDEASMLLKEMETQGGGCLLNDVTYNVVISFLAREGHLENAA 300

Query: 85  VLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGH 144
               KL + M+  +  S  +  +  L+ +L   G+V +V  +  +M     +        
Sbjct: 301 ----KLVDSMRLSKKAS--SFTYNPLITALLERGFVQKVEALQMEMENEGIMPTLVTYNA 354

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
           +I  L +S +   A      MR  GL P L++YNS+++G CK G    A  LL +  + G
Sbjct: 355 IIHGLLKSEQVEAAQLKFAEMRAMGLLPDLITYNSMLNGYCKAGNLKEALWLLGDLRRAG 414

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL 264
             P+  TY  L++G C    LE+AR++ + M+ +          I +     ++N     
Sbjct: 415 LAPTVLTYNTLIDGYCRLGGLEEARRLKEEMVEQGCFPDVCTYTILMNGSHKVRNLPMAR 474

Query: 265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 324
                ML    QPD    NT I     +G   +A + L +++  K   PD VT+  II G
Sbjct: 475 EFFDEMLSKGLQPDCFAYNTRICAELILGDTHKAFQ-LREVMMLKGIYPDTVTYNVIIDG 533

Query: 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 384
           L   G +++A +L  + M   G  P  +TY  ++        + EA+++ N M+  G+  
Sbjct: 534 LCKTGNLKDAKDLKMK-MVSDGLQPDCITYTCLIHAHCERGLLSEARKLLNGMVSDGLQP 592

Query: 385 DSTTYAIVIDGLCESNQLDEA----KRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEA 440
              TY I+I   C    L  A    ++  D  + P+ I     Y  +I  LCR+G+   A
Sbjct: 593 SVVTYTILIHTCCRRGNLYSAYGWFRKMLDVGIEPNEI----TYNVLIHALCRTGRTLLA 648

Query: 441 VHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
            H  +E+++ G+ PN   Y ++IDG C+     +A ++  EM +NG+ PD  T   L K
Sbjct: 649 YHHFHEMLERGLAPNKYTYTLLIDGNCREGNWADAIRLYFEMHQNGIPPDYCTHNALFK 707



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 117/467 (25%), Positives = 212/467 (45%), Gaps = 10/467 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGH--VPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHC 58
           +D      R  EA  L  +M+++G   + N V+Y  +I    R G ++ A K+ D MR  
Sbjct: 250 LDSFLKEGRKDEASMLLKEMETQGGGCLLNDVTYNVVISFLAREGHLENAAKLVDSMR-L 308

Query: 59  GVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREG 118
               +S TY+ L+  +L    V++   L  ++     E E +      +  ++  L +  
Sbjct: 309 SKKASSFTYNPLITALLERGFVQKVEALQMEM-----ENEGIMPTLVTYNAIIHGLLKSE 363

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
            V        +M     + +      M++  C++G    A  ++  +R+ GL P++++YN
Sbjct: 364 QVEAAQLKFAEMRAMGLLPDLITYNSMLNGYCKAGNLKEALWLLGDLRRAGLAPTVLTYN 423

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
           +++ G C+ GG   A +L EE ++ G  P   TY +L+ G     +L  AR+    MLSK
Sbjct: 424 TLIDGYCRLGGLEEARRLKEEMVEQGCFPDVCTYTILMNGSHKVRNLPMAREFFDEMLSK 483

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
                    N  + A  ++ +  +   +   M+     PD +T N +I+G CK G +++A
Sbjct: 484 GLQPDCFAYNTRICAELILGDTHKAFQLREVMMLKGIYPDTVTYNVIIDGLCKTGNLKDA 543

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
             +   MV+     PD +T+T +I      G + EA  LL   M   G  P +VTY  ++
Sbjct: 544 KDLKMKMVSDGL-QPDCITYTCLIHAHCERGLLSEARKLL-NGMVSDGLQPSVVTYTILI 601

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
               R   +  A   F  ML +G+  +  TY ++I  LC + +   A   + +++     
Sbjct: 602 HTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNVLIHALCRTGRTLLAYHHFHEMLERGLA 661

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDG 465
            + Y Y  +I G CR G   +A+   +E+  +G+ P+   +N +  G
Sbjct: 662 PNKYTYTLLIDGNCREGNWADAIRLYFEMHQNGIPPDYCTHNALFKG 708



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 114/436 (26%), Positives = 198/436 (45%), Gaps = 43/436 (9%)

Query: 74  VLRT-RDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQ 132
           VLR  RD  R + +     E ++ E + ++    +  L+DS  +EG  +E   + ++M  
Sbjct: 214 VLRVLRDAARWDDVRAVYREMLQLEIEPTI--VTYNTLLDSFLKEGRKDEASMLLKEMET 271

Query: 133 --GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGC 190
             G  +  +     +I  L R G    A+++V  MR      S  +YN ++  L + G  
Sbjct: 272 QGGGCLLNDVTYNVVISFLAREGHLENAAKLVDSMRLSKKASSF-TYNPLITALLERGFV 330

Query: 191 MRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIY 250
            +   L  E    G +P+  TY  ++ GL     +E A+  L+F                
Sbjct: 331 QKVEALQMEMENEGIMPTLVTYNAIIHGLLKSEQVEAAQ--LKFA--------------E 374

Query: 251 LRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKF 310
           +RA+ L+                   PD+IT N+++NG+CK G ++EAL +L D+     
Sbjct: 375 MRAMGLL-------------------PDLITYNSMLNGYCKAGNLKEALWLLGDLRRAGL 415

Query: 311 CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEA 370
            AP  +T+ T+I G   +G ++EA  L  + M ++G  P + TY  ++ G  ++R +  A
Sbjct: 416 -APTVLTYNTLIDGYCRLGGLEEARRL-KEEMVEQGCFPDVCTYTILMNGSHKVRNLPMA 473

Query: 371 KEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKG 430
           +E F+ ML  G+  D   Y   I          +A +  + ++      D   Y  +I G
Sbjct: 474 REFFDEMLSKGLQPDCFAYNTRICAELILGDTHKAFQLREVMMLKGIYPDTVTYNVIIDG 533

Query: 431 LCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD 490
           LC++G + +A     ++V  G+ P+ + Y  +I   C+  +  EA ++L  M  +GL P 
Sbjct: 534 LCKTGNLKDAKDLKMKMVSDGLQPDCITYTCLIHAHCERGLLSEARKLLNGMVSDGLQPS 593

Query: 491 AVTWRILDKLHGNRGN 506
            VT+ IL      RGN
Sbjct: 594 VVTYTILIHTCCRRGN 609



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 105/405 (25%), Positives = 174/405 (42%), Gaps = 42/405 (10%)

Query: 10  VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSV 69
           V +   L  +M++ G +P +V+Y  +IHG  ++ +++ A   F EMR  G+LP+ +TY+ 
Sbjct: 330 VQKVEALQMEMENEGIMPTLVTYNAIIHGLLKSEQVEAAQLKFAEMRAMGLLPDLITYNS 389

Query: 70  LVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAED 129
           ++ G  +  +++ A  L+  L         L+     +  L+D  CR G + E  R+ E+
Sbjct: 390 MLNGYCKAGNLKEALWLLGDL-----RRAGLAPTVLTYNTLIDGYCRLGGLEEARRLKEE 444

Query: 130 M-------------------------PQGKSVNEE----------FACGHMIDSLCRSGR 154
           M                         P  +   +E          FA    I +    G 
Sbjct: 445 MVEQGCFPDVCTYTILMNGSHKVRNLPMAREFFDEMLSKGLQPDCFAYNTRICAELILGD 504

Query: 155 NHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKV 214
            H A ++  VM  +G+ P  V+YN I+ GLCK G    A  L  + +  G  P   TY  
Sbjct: 505 THKAFQLREVMMLKGIYPDTVTYNVIIDGLCKTGNLKDAKDLKMKMVSDGLQPDCITYTC 564

Query: 215 LVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQ 274
           L+   C    L +ARK+L  M+S           I +   C   N          ML   
Sbjct: 565 LIHAHCERGLLSEARKLLNGMVSDGLQPSVVTYTILIHTCCRRGNLYSAYGWFRKMLDVG 624

Query: 275 CQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEA 334
            +P+ IT N +I+  C+ GR   A    ++M+  +  AP+  T+T +I G    G   +A
Sbjct: 625 IEPNEITYNVLIHALCRTGRTLLAYHHFHEMLE-RGLAPNKYTYTLLIDGNCREGNWADA 683

Query: 335 LNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
           + L ++ M Q G  P   T+NA+ +G  +       + + N +LG
Sbjct: 684 IRLYFE-MHQNGIPPDYCTHNALFKGFDKGHMYHAIEYLENIVLG 727



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 90/198 (45%), Gaps = 6/198 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    + +A  L   M S G  P+ ++YT LIH +C  G +  A K+ + M   G+
Sbjct: 531 IDGLCKTGNLKDAKDLKMKMVSDGLQPDCITYTCLIHAHCERGLLSEARKLLNGMVSDGL 590

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TY++L+    R     R N+     W R   +  +  N   +  L+ +LCR G  
Sbjct: 591 QPSVVTYTILIHTCCR-----RGNLYSAYGWFRKMLDVGIEPNEITYNVLIHALCRTGRT 645

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
              +    +M +      ++    +ID  CR G    A R+ + M + G+ P   ++N++
Sbjct: 646 LLAYHHFHEMLERGLAPNKYTYTLLIDGNCREGNWADAIRLYFEMHQNGIPPDYCTHNAL 705

Query: 181 VHGLCKHGGCMRAYQLLE 198
             G  K G    A + LE
Sbjct: 706 FKGFDK-GHMYHAIEYLE 722



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 81/206 (39%), Gaps = 40/206 (19%)

Query: 339 YQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCML-------------------- 378
           ++V+   G +P +   N VLR L    R ++ + V+  ML                    
Sbjct: 196 FRVVACHGVAPDVRDCNCVLRVLRDAARWDDVRAVYREMLQLEIEPTIVTYNTLLDSFLK 255

Query: 379 -----------------GIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
                            G G + +  TY +VI  L     L+ A +  D +   S    +
Sbjct: 256 EGRKDEASMLLKEMETQGGGCLLNDVTYNVVISFLAREGHLENAAKLVDSMRL-SKKASS 314

Query: 422 YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI-LR 480
           + Y  +I  L   G + +      E+ + G+ P +V YN +I G  K S + EA Q+   
Sbjct: 315 FTYNPLITALLERGFVQKVEALQMEMENEGIMPTLVTYNAIIHGLLK-SEQVEAAQLKFA 373

Query: 481 EMRKNGLNPDAVTWRILDKLHGNRGN 506
           EMR  GL PD +T+  +   +   GN
Sbjct: 374 EMRAMGLLPDLITYNSMLNGYCKAGN 399


>gi|255546727|ref|XP_002514422.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546418|gb|EEF47918.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 809

 Score =  174 bits (442), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 126/522 (24%), Positives = 236/522 (45%), Gaps = 73/522 (13%)

Query: 42  TGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLS 101
           +G  D A+ V  + +HCG  P  L+ + L+  ++ +R V+ A      ++ ++K    L+
Sbjct: 162 SGMFDQAFDVLLQTKHCGFAPQILSCNFLMNRLVESRKVDMA----IAIYRQLKAF-GLN 216

Query: 102 VNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRV 161
            N+  +   +   CR+G + E   +  DM +       F+    I+ LC  GR+    +V
Sbjct: 217 PNDYTYTIAIKGFCRKGNLAEAIDVFRDMEESGVTPNSFSYTTFIEGLCLHGRSDLGFKV 276

Query: 162 VYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCG 221
           +  +    +   + +Y  ++ G C       A  +L E  + G+ P  + Y  L+ G C 
Sbjct: 277 LQDVINAKIPMDVFAYTVVIRGFCSEMKLKEAESILREMEKQGFAPDVYVYCALISGYCM 336

Query: 222 ESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVIT 281
             +L KA  +   M+SK       I +  L+ L  +   +E+ N      +     D   
Sbjct: 337 VGNLLKALALHDEMVSKGVKTNCVILSSILQGLSQMGMASEVANQFKEFKKMGIFFDEAC 396

Query: 282 LNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQV 341
            N V++  CK+G++EEA+++L +M  GK   PD + +TT+I G    G++ +ALN+ Y+ 
Sbjct: 397 YNVVMDALCKLGKVEEAVELLVEM-KGKKMVPDIINYTTVISGYFLKGKVVDALNI-YRE 454

Query: 342 MPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTT------------- 388
           M   G+ P IVTYN +  G  R    +EA  + N M   GV  D+ T             
Sbjct: 455 MKDIGHKPDIVTYNVLAGGFSRNGLTQEALSLLNYMETQGVKPDTVTHNMIIEGLCIGGK 514

Query: 389 ------------------YAIVIDGLCESNQLDEA----------------KRFWD---- 410
                             Y+ +++G CE+N +++A                  F+     
Sbjct: 515 VDDAQAFFDNLEEKCLENYSAMVNGYCEANHVNKAFALLIRLSKQGRILKKASFFKLLGN 574

Query: 411 --------------DIVWPSNIHDNYV-YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN 455
                         + +   NI+   + Y+ +I  L ++G++ +A +    LVD G+ P+
Sbjct: 575 LCSEGDSEKALCLLETMVALNINPTMIMYSKVIGALFQAGEMEKAQYVFNMLVDRGLAPD 634

Query: 456 IVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           ++ Y ++I+G C+++  +EA+ +L +M+  G+ PD +T+ +L
Sbjct: 635 VITYTIMINGYCRMNKMKEAWHVLGDMKNRGIEPDVITYTVL 676



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 120/510 (23%), Positives = 226/510 (44%), Gaps = 28/510 (5%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C   ++ EA  +  +M+ +G  P+V  Y  LI GYC  G +  A  + DEM   GV  N
Sbjct: 299 FCSEMKLKEAESILREMEKQGFAPDVYVYCALISGYCMVGNLLKALALHDEMVSKGVKTN 358

Query: 64  SLTYSVLVRGVLRT-RDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
            +  S +++G+ +     E AN   FK +++M     +  + A +  ++D+LC+ G V E
Sbjct: 359 CVILSSILQGLSQMGMASEVAN--QFKEFKKM----GIFFDEACYNVVMDALCKLGKVEE 412

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
              +  +M   K V +      +I      G+   A  +   M+  G  P +V+YN +  
Sbjct: 413 AVELLVEMKGKKMVPDIINYTTVISGYFLKGKVVDALNIYREMKDIGHKPDIVTYNVLAG 472

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           G  ++G    A  LL      G  P   T+ +++EGLC    ++ A+     +  K   +
Sbjct: 473 GFSRNGLTQEALSLLNYMETQGVKPDTVTHNMIIEGLCIGGKVDDAQAFFDNLEEKCLEN 532

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
            + + N Y    C   +  +   +L+ + +        +   ++   C  G  E+AL +L
Sbjct: 533 YSAMVNGY----CEANHVNKAFALLIRLSKQGRILKKASFFKLLGNLCSEGDSEKALCLL 588

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
             MVA     P  + ++ +I  L   G +++A   ++ ++  RG +P ++TY  ++ G  
Sbjct: 589 ETMVALNI-NPTMIMYSKVIGALFQAGEMEKA-QYVFNMLVDRGLAPDVITYTIMINGYC 646

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVI---------------DGLCESNQLDEAKR 407
           R+ +++EA  V   M   G+  D  TY +++               D +     + +   
Sbjct: 647 RMNKMKEAWHVLGDMKNRGIEPDVITYTVLLNNCSKIDLRSSSSSLDAMKSKENMMDPSA 706

Query: 408 FWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGAC 467
            W ++       D   Y  +I   C++  I +A++   E++D G+ P+ V Y  ++ G C
Sbjct: 707 LWSEMKDMDIKPDVICYTVLIDKHCKTNNIQDAINLFNEMIDRGLAPDTVTYTALLSGYC 766

Query: 468 KLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            +   ++A  +  EM   G+ PDA T  +L
Sbjct: 767 NVGNIKKAVVLFDEMLNKGIRPDAHTMSVL 796



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 141/587 (24%), Positives = 236/587 (40%), Gaps = 88/587 (14%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M++L    +V  A  ++  +K+ G  PN  +YT  I G+CR G +  A  VF +M   GV
Sbjct: 191 MNRLVESRKVDMAIAIYRQLKAFGLNPNDYTYTIAIKGFCRKGNLAEAIDVFRDMEESGV 250

Query: 61  LPNSLTYSVLVRGV-LRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGY 119
            PNS +Y+  + G+ L  R     + L FK+ + +   + + ++  A+  ++   C E  
Sbjct: 251 TPNSFSYTTFIEGLCLHGR-----SDLGFKVLQDVINAK-IPMDVFAYTVVIRGFCSEMK 304

Query: 120 VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           + E   I  +M +     + +    +I   C  G    A  +   M  +G+  + V  +S
Sbjct: 305 LKEAESILREMEKQGFAPDVYVYCALISGYCMVGNLLKALALHDEMVSKGVKTNCVILSS 364

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           I+ GL + G         +E  + G    E  Y V+++ LC    +E+A ++L  M  KK
Sbjct: 365 ILQGLSQMGMASEVANQFKEFKKMGIFFDEACYNVVMDALCKLGKVEEAVELLVEMKGKK 424

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
            V         +    L     + LN+   M     +PD++T N +  GF + G  +EAL
Sbjct: 425 MVPDIINYTTVISGYFLKGKVVDALNIYREMKDIGHKPDIVTYNVLAGGFSRNGLTQEAL 484

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ--RGYSPGIVTY--- 354
            +LN M   +   PD VT   II GL   G++ +A      +  +    YS  +  Y   
Sbjct: 485 SLLNYM-ETQGVKPDTVTHNMIIEGLCIGGKVDDAQAFFDNLEEKCLENYSAMVNGYCEA 543

Query: 355 ---NAVLRGLFRLRR----------------------VEEAKEVFNCMLGIGVVADSTTY 389
              N     L RL +                       E+A  +   M+ + +      Y
Sbjct: 544 NHVNKAFALLIRLSKQGRILKKASFFKLLGNLCSEGDSEKALCLLETMVALNINPTMIMY 603

Query: 390 AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFL----- 444
           + VI  L ++ ++++A+  ++ +V      D   Y  MI G CR  K+ EA H L     
Sbjct: 604 SKVIGALFQAGEMEKAQYVFNMLVDRGLAPDVITYTIMINGYCRMNKMKEAWHVLGDMKN 663

Query: 445 ---------------------------------------------YELVDSGVTPNIVCY 459
                                                         E+ D  + P+++CY
Sbjct: 664 RGIEPDVITYTVLLNNCSKIDLRSSSSSLDAMKSKENMMDPSALWSEMKDMDIKPDVICY 723

Query: 460 NVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
            V+ID  CK +  ++A  +  EM   GL PD VT+  L   + N GN
Sbjct: 724 TVLIDKHCKTNNIQDAINLFNEMIDRGLAPDTVTYTALLSGYCNVGN 770



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 115/459 (25%), Positives = 206/459 (44%), Gaps = 30/459 (6%)

Query: 44  EMDVAYKVFDEMRHCGVLPNSLTYSVLVR-----GVLRTRDVERANVLMFKLWERMKEEE 98
           E  +A+  F++++  G   +  TY+ +VR     G  R  D    ++LM    E +K++ 
Sbjct: 72  EPSLAFSYFNQLKESGYSHDPYTYAAIVRILCFWGWSRKLD----SILM----EIIKKDG 123

Query: 99  DLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGA 158
           +L   +    NL ++L  +G  NE F +   +              +I     SG    A
Sbjct: 124 NL---DFGIVNLFEAL-GDGIANESFSVLVQVSDA-----------LIKVCVASGMFDQA 168

Query: 159 SRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEG 218
             V+   +  G  P ++S N +++ L +      A  +  +   FG  P+++TY + ++G
Sbjct: 169 FDVLLQTKHCGFAPQILSCNFLMNRLVESRKVDMAIAIYRQLKAFGLNPNDYTYTIAIKG 228

Query: 219 LCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPD 278
            C + +L +A  V + M        +     ++  LCL         VL  ++  +   D
Sbjct: 229 FCRKGNLAEAIDVFRDMEESGVTPNSFSYTTFIEGLCLHGRSDLGFKVLQDVINAKIPMD 288

Query: 279 VITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLL 338
           V     VI GFC   +++EA  +L +M    F APD   +  +I G   VG + +AL  L
Sbjct: 289 VFAYTVVIRGFCSEMKLKEAESILREMEKQGF-APDVYVYCALISGYCMVGNLLKAL-AL 346

Query: 339 YQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE 398
           +  M  +G     V  +++L+GL ++    E    F     +G+  D   Y +V+D LC+
Sbjct: 347 HDEMVSKGVKTNCVILSSILQGLSQMGMASEVANQFKEFKKMGIFFDEACYNVVMDALCK 406

Query: 399 SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVC 458
             +++EA     ++     + D   Y  +I G    GK+ +A++   E+ D G  P+IV 
Sbjct: 407 LGKVEEAVELLVEMKGKKMVPDIINYTTVISGYFLKGKVVDALNIYREMKDIGHKPDIVT 466

Query: 459 YNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           YNV+  G  +  + +EA  +L  M   G+ PD VT  ++
Sbjct: 467 YNVLAGGFSRNGLTQEALSLLNYMETQGVKPDTVTHNMI 505



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 100/427 (23%), Positives = 190/427 (44%), Gaps = 59/427 (13%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           MD LC L +V EA +L  +MK +  VP++++YTT+I GY   G++  A  ++ EM+  G 
Sbjct: 401 MDALCKLGKVEEAVELLVEMKGKKMVPDIINYTTVISGYFLKGKVVDALNIYREMKDIGH 460

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TY+VL  G  R    + A  L+        E + +  +      +++ LC  G V
Sbjct: 461 KPDIVTYNVLAGGFSRNGLTQEALSLL-----NYMETQGVKPDTVTHNMIIEGLCIGGKV 515

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           ++     +++ +     E ++   M++  C +   + A  ++  + K+G      S+  +
Sbjct: 516 DDAQAFFDNLEE--KCLENYSA--MVNGYCEANHVNKAFALLIRLSKQGRILKKASFFKL 571

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +  LC  G   +A  LLE  +     P+   Y  ++  L    ++EKA+ V   +     
Sbjct: 572 LGNLCSEGDSEKALCLLETMVALNINPTMIMYSKVIGALFQAGEMEKAQYVFNML----- 626

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           VDR                                 PDVIT   +ING+C+M +++EA  
Sbjct: 627 VDRG------------------------------LAPDVITYTIMINGYCRMNKMKEAWH 656

Query: 301 VLNDMVAGKFCAPDAVTFTTII-----------FGLLNVGRIQEAL---NLLYQVMPQRG 346
           VL DM   +   PD +T+T ++              L+  + +E +   + L+  M    
Sbjct: 657 VLGDM-KNRGIEPDVITYTVLLNNCSKIDLRSSSSSLDAMKSKENMMDPSALWSEMKDMD 715

Query: 347 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
             P ++ Y  ++    +   +++A  +FN M+  G+  D+ TY  ++ G C    + +A 
Sbjct: 716 IKPDVICYTVLIDKHCKTNNIQDAINLFNEMIDRGLAPDTVTYTALLSGYCNVGNIKKAV 775

Query: 407 RFWDDIV 413
             +D+++
Sbjct: 776 VLFDEML 782


>gi|302780731|ref|XP_002972140.1| hypothetical protein SELMODRAFT_450859 [Selaginella moellendorffii]
 gi|300160439|gb|EFJ27057.1| hypothetical protein SELMODRAFT_450859 [Selaginella moellendorffii]
          Length = 482

 Score =  174 bits (442), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 115/425 (27%), Positives = 203/425 (47%), Gaps = 19/425 (4%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    + +A   F ++K    + N VSY  LI+ +C+T  +D A ++F EM+  G 
Sbjct: 73  IDSLCKSDMIDKAESWFQELKDFRGLVNTVSYNILINAFCKTKRIDEAIQLFGEMKAPGC 132

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFAN---LVDSLCRE 117
            P++ TY+ L+ G+ R   +  A     + +ER+      S   A+F     LVD  C+ 
Sbjct: 133 APSTSTYNTLIGGLCRVERLGEAQ----QFYERLLS----SGAGASFITYNILVDGFCKA 184

Query: 118 GYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
             V E   +  ++     V        +ID+L + G+ H A      M K G+ P  V++
Sbjct: 185 DRVPEAVELLNELVARGGVVTSAPYNCIIDTLFKKGKIHEAELFFNRMEKDGVRPQEVTF 244

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
             ++ GLCK     RA ++    ++ G  PS      L++G C    +++A ++ + M +
Sbjct: 245 TVLIDGLCKANRVARAKEIFFSYLESGGSPSVVICSCLMDGFCKYGGVDEAWRIFELMTN 304

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
           +        CNI +  LC  K  ++   V   +++ Q +PDV+T +T ++G C+  R+++
Sbjct: 305 RGCTPNDVSCNILINGLCKAKRLSQAREVFEEVVKRQAKPDVVTYSTFMDGLCRAHRVDQ 364

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           A +VL  M+  K   PD V +T +I GL ++GR+ EA  +    M   G +P   T N +
Sbjct: 365 ARQVLC-MLVDKGGTPDVVMYTALISGLCSLGRLDEARKVFEVDMRAAGCAPNNFTCNVL 423

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 417
           + G     R++EA+E+F   +  GV  D  T++ + +   ++         WD   W   
Sbjct: 424 VNGFGLAGRLDEARELFQRFVERGVQPDCRTFSAMANNTAKTEG-------WDIYSWNEW 476

Query: 418 IHDNY 422
           I   +
Sbjct: 477 ITGKW 481



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 117/396 (29%), Positives = 183/396 (46%), Gaps = 17/396 (4%)

Query: 110 LVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRK-R 168
           LV  L + G   E  ++ + M   + + E       IDSLC+S     A      ++  R
Sbjct: 37  LVRELSKAGRAEECLKVVKLMLDRQQLRERHLVNITIDSLCKSDMIDKAESWFQELKDFR 96

Query: 169 GLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKA 228
           GL  + VSYN +++  CK      A QL  E    G  PS  TY  L+ GLC    L +A
Sbjct: 97  GLVNT-VSYNILINAFCKTKRIDEAIQLFGEMKAPGCAPSTSTYNTLIGGLCRVERLGEA 155

Query: 229 RKVLQFMLSKKDVDRTRICNIYLRALC---LIKNPTELLNVLVFMLQTQCQPDVIT---L 282
           ++  + +LS          NI +   C    +    ELLN LV       +  V+T    
Sbjct: 156 QQFYERLLSSGAGASFITYNILVDGFCKADRVPEAVELLNELV------ARGGVVTSAPY 209

Query: 283 NTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVM 342
           N +I+   K G+I EA    N M       P  VTFT +I GL    R+  A  + +  +
Sbjct: 210 NCIIDTLFKKGKIHEAELFFNRMEKDGV-RPQEVTFTVLIDGLCKANRVARAKEIFFSYL 268

Query: 343 PQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQL 402
            + G SP +V  + ++ G  +   V+EA  +F  M   G   +  +  I+I+GLC++ +L
Sbjct: 269 -ESGGSPSVVICSCLMDGFCKYGGVDEAWRIFELMTNRGCTPNDVSCNILINGLCKAKRL 327

Query: 403 DEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVV 462
            +A+  ++++V      D   Y+  + GLCR+ ++ +A   L  LVD G TP++V Y  +
Sbjct: 328 SQAREVFEEVVKRQAKPDVVTYSTFMDGLCRAHRVDQARQVLCMLVDKGGTPDVVMYTAL 387

Query: 463 IDGACKLSMKREAYQILR-EMRKNGLNPDAVTWRIL 497
           I G C L    EA ++   +MR  G  P+  T  +L
Sbjct: 388 ISGLCSLGRLDEARKVFEVDMRAAGCAPNNFTCNVL 423



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 110/459 (23%), Positives = 216/459 (47%), Gaps = 11/459 (2%)

Query: 40  CRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEED 99
           C  G++D A ++F  +   G     L   +LVR + +    E    ++  + +R +  E 
Sbjct: 10  CHVGKLDEALELFHSLVSDGC---GLPADLLVRELSKAGRAEECLKVVKLMLDRQQLRER 66

Query: 100 LSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGAS 159
             VN       +DSLC+   +++     +++   + +    +   +I++ C++ R   A 
Sbjct: 67  HLVNIT-----IDSLCKSDMIDKAESWFQELKDFRGLVNTVSYNILINAFCKTKRIDEAI 121

Query: 160 RVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGL 219
           ++   M+  G  PS  +YN+++ GLC+      A Q  E  +  G   S  TY +LV+G 
Sbjct: 122 QLFGEMKAPGCAPSTSTYNTLIGGLCRVERLGEAQQFYERLLSSGAGASFITYNILVDGF 181

Query: 220 CGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDV 279
           C    + +A ++L  ++++  V  +   N  +  L       E       M +   +P  
Sbjct: 182 CKADRVPEAVELLNELVARGGVVTSAPYNCIIDTLFKKGKIHEAELFFNRMEKDGVRPQE 241

Query: 280 ITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLY 339
           +T   +I+G CK  R+  A ++    +     +P  V  + ++ G    G + EA  + +
Sbjct: 242 VTFTVLIDGLCKANRVARAKEIFFSYLESGG-SPSVVICSCLMDGFCKYGGVDEAWRI-F 299

Query: 340 QVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCES 399
           ++M  RG +P  V+ N ++ GL + +R+ +A+EVF  ++      D  TY+  +DGLC +
Sbjct: 300 ELMTNRGCTPNDVSCNILINGLCKAKRLSQAREVFEEVVKRQAKPDVVTYSTFMDGLCRA 359

Query: 400 NQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVH-FLYELVDSGVTPNIVC 458
           +++D+A++    +V      D  +Y A+I GLC  G++ EA   F  ++  +G  PN   
Sbjct: 360 HRVDQARQVLCMLVDKGGTPDVVMYTALISGLCSLGRLDEARKVFEVDMRAAGCAPNNFT 419

Query: 459 YNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            NV+++G        EA ++ +   + G+ PD  T+  +
Sbjct: 420 CNVLVNGFGLAGRLDEARELFQRFVERGVQPDCRTFSAM 458



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 85/177 (48%), Gaps = 4/177 (2%)

Query: 321 IIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI 380
           I+  L +VG++ EAL L + ++      P     + ++R L +  R EE  +V   ML  
Sbjct: 5   IVLCLCHVGKLDEALELFHSLVSDGCGLPA----DLLVRELSKAGRAEECLKVVKLMLDR 60

Query: 381 GVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEA 440
             + +     I ID LC+S+ +D+A+ ++ ++     + +   Y  +I   C++ +I EA
Sbjct: 61  QQLRERHLVNITIDSLCKSDMIDKAESWFQELKDFRGLVNTVSYNILINAFCKTKRIDEA 120

Query: 441 VHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           +    E+   G  P+   YN +I G C++    EA Q    +  +G     +T+ IL
Sbjct: 121 IQLFGEMKAPGCAPSTSTYNTLIGGLCRVERLGEAQQFYERLLSSGAGASFITYNIL 177


>gi|242038885|ref|XP_002466837.1| hypothetical protein SORBIDRAFT_01g014995 [Sorghum bicolor]
 gi|241920691|gb|EER93835.1| hypothetical protein SORBIDRAFT_01g014995 [Sorghum bicolor]
          Length = 1014

 Score =  174 bits (441), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 151/576 (26%), Positives = 253/576 (43%), Gaps = 98/576 (17%)

Query: 6   GLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSL 65
           G  ++  AH +F  M  +  VP+V +YTT+I GYCR   +D A  V  EM+  GV+P+ +
Sbjct: 339 GEGKINHAHYVFNHMLRQTFVPSVATYTTMIDGYCRNRRIDKALSVLSEMQITGVMPSEI 398

Query: 66  --------------------TYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNA 105
                               TYS L+   + T + E     M     RMK    +S ++ 
Sbjct: 399 SKAKQILKSMLEDGIDPDIVTYSALINEGMIT-EAEHFRQYM----SRMK----ISFDSV 449

Query: 106 AFANLVDSLCREGYVNEVFRIAEDMPQ-GKSVNEEFACGH--MIDSLCRSGRNHGASRVV 162
           +F  ++DS C  G + E F + + M + G S N    C +  ++  LC+ G    A + +
Sbjct: 450 SFNCIIDSYCHRGNIVEAFTVYDAMVRYGHSPN---VCTYQNLLRGLCQGGHLVQAKQFM 506

Query: 163 YVMRKRGLTPSLV---SYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGL 219
           + +      PS +   ++N+++ G+CK+G    A  L E+ ++   LP  HTY +L+ G 
Sbjct: 507 FCLLD---IPSAIDEKTFNALLLGICKYGTLDEALDLCEKMVKNNCLPDIHTYTILLSGF 563

Query: 220 CGESDLEKARKVLQFMLSKKDVDRTR-------------------------ICNIYLRAL 254
           C +  +  A  +LQ ML K  V  T                          IC   L A 
Sbjct: 564 CRKGKILPALIMLQMMLDKGVVPDTVAYTCLLNGLINEGQVKAASYVFQEIICKEGLYAD 623

Query: 255 CLIKNP-----------TELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
           C+  N              +  ++  M Q++  P+  + N +++G+ K G+  ++L +  
Sbjct: 624 CIAYNSLMNGYLKGGNINTIKRMMSDMYQSEVYPNSASYNILMHGYVKGGQFSKSLYLYK 683

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            MV  K   PD VT+  +I GL   G I  A+  L + M   G  P  + ++ ++     
Sbjct: 684 YMVR-KGIRPDNVTYRLLILGLSECGLIDIAVKFL-EKMVLEGIFPDRLVFDILITAFSE 741

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI----VWPSNIH 419
             ++  A ++FNCM  + +   S TY+ +I+GL   N LD++     ++    + P++ H
Sbjct: 742 KSKMHNALQLFNCMKWLRMSPSSKTYSAMINGLIRKNYLDQSHEVLREMLQVGLQPNHTH 801

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
               Y A++   CR GKI  A     E+   G+ P  V  + +I G CK     EA  + 
Sbjct: 802 ----YIALVNAKCRVGKIDRAFRLKEEMKALGIVPADVAESSIIRGLCKCGKLEEAVIVF 857

Query: 480 REMRKNGLNPDAVTW-----------RILDKLHGNR 504
             M ++G+ P   T+           +I D LH  R
Sbjct: 858 STMMRSGMVPTVATFTTLMHCLCKESKIADALHLKR 893



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 126/545 (23%), Positives = 239/545 (43%), Gaps = 58/545 (10%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC      +A  +   MK+   + N V+Y T++H Y + G    A  V ++M    +
Sbjct: 230 LNSLCTNGEFRKAEDMLQKMKT-CRLSNSVTYNTILHWYVKKGRFKAALCVLEDMERDSI 288

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             +  TY++++  + R +   RA    F L +RM+++ DL  +   +  L++    EG +
Sbjct: 289 PADIYTYNIMIDKLCRIKRSARA----FLLLKRMRKD-DLIPDECTYNTLINGFFGEGKI 343

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPS------- 173
           N    +   M +   V        MID  CR+ R   A  V+  M+  G+ PS       
Sbjct: 344 NHAHYVFNHMLRQTFVPSVATYTTMIDGYCRNRRIDKALSVLSEMQITGVMPSEISKAKQ 403

Query: 174 --------------------------------------------LVSYNSIVHGLCKHGG 189
                                                        VS+N I+   C  G 
Sbjct: 404 ILKSMLEDGIDPDIVTYSALINEGMITEAEHFRQYMSRMKISFDSVSFNCIIDSYCHRGN 463

Query: 190 CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNI 249
            + A+ + +  +++G+ P+  TY+ L+ GLC    L +A++ +  +L        +  N 
Sbjct: 464 IVEAFTVYDAMVRYGHSPNVCTYQNLLRGLCQGGHLVQAKQFMFCLLDIPSAIDEKTFNA 523

Query: 250 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK 309
            L  +C      E L++   M++  C PD+ T   +++GFC+ G+I  AL +L  M+  K
Sbjct: 524 LLLGICKYGTLDEALDLCEKMVKNNCLPDIHTYTILLSGFCRKGKILPALIMLQ-MMLDK 582

Query: 310 FCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEE 369
              PD V +T ++ GL+N G+++ A  +  +++ + G     + YN+++ G  +   +  
Sbjct: 583 GVVPDTVAYTCLLNGLINEGQVKAASYVFQEIICKEGLYADCIAYNSLMNGYLKGGNINT 642

Query: 370 AKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIK 429
            K + + M    V  +S +Y I++ G  +  Q  ++   +  +V      DN  Y  +I 
Sbjct: 643 IKRMMSDMYQSEVYPNSASYNILMHGYVKGGQFSKSLYLYKYMVRKGIRPDNVTYRLLIL 702

Query: 430 GLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNP 489
           GL   G I  AV FL ++V  G+ P+ + ++++I    + S    A Q+   M+   ++P
Sbjct: 703 GLSECGLIDIAVKFLEKMVLEGIFPDRLVFDILITAFSEKSKMHNALQLFNCMKWLRMSP 762

Query: 490 DAVTW 494
            + T+
Sbjct: 763 SSKTY 767



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 116/470 (24%), Positives = 219/470 (46%), Gaps = 10/470 (2%)

Query: 30  VSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFK 89
           VS+  +I  YC  G +  A+ V+D M   G  PN  TY  L+RG+ +   + +A   MF 
Sbjct: 449 VSFNCIIDSYCHRGNIVEAFTVYDAMVRYGHSPNVCTYQNLLRGLCQGGHLVQAKQFMFC 508

Query: 90  LWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSL 149
           L +        +++   F  L+  +C+ G ++E   + E M +   + +      ++   
Sbjct: 509 LLDIPS-----AIDEKTFNALLLGICKYGTLDEALDLCEKMVKNNCLPDIHTYTILLSGF 563

Query: 150 CRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGI-QFGYLPS 208
           CR G+   A  ++ +M  +G+ P  V+Y  +++GL   G    A  + +E I + G    
Sbjct: 564 CRKGKILPALIMLQMMLDKGVVPDTVAYTCLLNGLINEGQVKAASYVFQEIICKEGLYAD 623

Query: 209 EHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLV 268
              Y  L+ G     ++   ++++  M   +    +   NI +         ++ L +  
Sbjct: 624 CIAYNSLMNGYLKGGNINTIKRMMSDMYQSEVYPNSASYNILMHGYVKGGQFSKSLYLYK 683

Query: 269 FMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV-AGKFCAPDAVTFTTIIFGLLN 327
           +M++   +PD +T   +I G  + G I+ A+K L  MV  G F  PD + F  +I     
Sbjct: 684 YMVRKGIRPDNVTYRLLILGLSECGLIDIAVKFLEKMVLEGIF--PDRLVFDILITAFSE 741

Query: 328 VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADST 387
             ++  AL L +  M     SP   TY+A++ GL R   ++++ EV   ML +G+  + T
Sbjct: 742 KSKMHNALQL-FNCMKWLRMSPSSKTYSAMINGLIRKNYLDQSHEVLREMLQVGLQPNHT 800

Query: 388 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYEL 447
            Y  +++  C   ++D A R  +++     +  +   +++I+GLC+ GK+ EAV     +
Sbjct: 801 HYIALVNAKCRVGKIDRAFRLKEEMKALGIVPADVAESSIIRGLCKCGKLEEAVIVFSTM 860

Query: 448 VDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           + SG+ P +  +  ++   CK S   +A  + R M    L  D V++ +L
Sbjct: 861 MRSGMVPTVATFTTLMHCLCKESKIADALHLKRLMESCRLKVDVVSYNVL 910



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 111/408 (27%), Positives = 190/408 (46%), Gaps = 28/408 (6%)

Query: 103 NNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVV 162
           N+  +  ++    ++G       + EDM +     + +    MID LCR  R+  A  ++
Sbjct: 256 NSVTYNTILHWYVKKGRFKAALCVLEDMERDSIPADIYTYNIMIDKLCRIKRSARAFLLL 315

Query: 163 YVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGE 222
             MRK  L P   +YN++++G    G    A+ +    ++  ++PS  TY  +++G C  
Sbjct: 316 KRMRKDDLIPDECTYNTLINGFFGEGKINHAHYVFNHMLRQTFVPSVATYTTMIDGYCRN 375

Query: 223 SDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL---NVLVFMLQTQCQPDV 279
             ++KA  VL  M         +I  +          P+E+     +L  ML+    PD+
Sbjct: 376 RRIDKALSVLSEM---------QITGVM---------PSEISKAKQILKSMLEDGIDPDI 417

Query: 280 ITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLY 339
           +T + +IN     G I EA      M   K  + D+V+F  II    + G I EA  + Y
Sbjct: 418 VTYSALINE----GMITEAEHFRQYMSRMKI-SFDSVSFNCIIDSYCHRGNIVEAFTV-Y 471

Query: 340 QVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCES 399
             M + G+SP + TY  +LRGL +   + +AK+   C+L I    D  T+  ++ G+C+ 
Sbjct: 472 DAMVRYGHSPNVCTYQNLLRGLCQGGHLVQAKQFMFCLLDIPSAIDEKTFNALLLGICKY 531

Query: 400 NQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCY 459
             LDEA    + +V  + + D + Y  ++ G CR GKI  A+  L  ++D GV P+ V Y
Sbjct: 532 GTLDEALDLCEKMVKNNCLPDIHTYTILLSGFCRKGKILPALIMLQMMLDKGVVPDTVAY 591

Query: 460 NVVIDGACKLSMKREAYQILREMR-KNGLNPDAVTWRILDKLHGNRGN 506
             +++G       + A  + +E+  K GL  D + +  L   +   GN
Sbjct: 592 TCLLNGLINEGQVKAASYVFQEIICKEGLYADCIAYNSLMNGYLKGGN 639



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 116/504 (23%), Positives = 231/504 (45%), Gaps = 57/504 (11%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           +C    + EA  L   M     +P++ +YT L+ G+CR G++  A  +   M   GV+P+
Sbjct: 528 ICKYGTLDEALDLCEKMVKNNCLPDIHTYTILLSGFCRKGKILPALIMLQMMLDKGVVPD 587

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           ++ Y+ L+ G++    V+ A+ +    ++ +  +E L  +  A+ +L++   + G +N +
Sbjct: 588 TVAYTCLLNGLINEGQVKAASYV----FQEIICKEGLYADCIAYNSLMNGYLKGGNINTI 643

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            R+  DM Q +                           VY        P+  SYN ++HG
Sbjct: 644 KRMMSDMYQSE---------------------------VY--------PNSASYNILMHG 668

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGL--CGESDLEKARKVLQFMLSKKDV 241
             K G   ++  L +  ++ G  P   TY++L+ GL  CG  D+  A K L+ M+ +   
Sbjct: 669 YVKGGQFSKSLYLYKYMVRKGIRPDNVTYRLLILGLSECGLIDI--AVKFLEKMVLEGIF 726

Query: 242 DRTRICNIYLRALC---LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
               + +I + A      + N  +L N + ++   +  P   T + +ING  +   ++++
Sbjct: 727 PDRLVFDILITAFSEKSKMHNALQLFNCMKWL---RMSPSSKTYSAMINGLIRKNYLDQS 783

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
            +VL +M+      P+   +  ++     VG+I  A  L  + M   G  P  V  ++++
Sbjct: 784 HEVLREMLQVGL-QPNHTHYIALVNAKCRVGKIDRAFRL-KEEMKALGIVPADVAESSII 841

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA---KRFWDDIVWP 415
           RGL +  ++EEA  VF+ M+  G+V    T+  ++  LC+ +++ +A   KR  +     
Sbjct: 842 RGLCKCGKLEEAVIVFSTMMRSGMVPTVATFTTLMHCLCKESKIADALHLKRLMESCRLK 901

Query: 416 SNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREA 475
            ++     Y  +I GLC+  +I +A+    E+   G+ PN+  Y  +        + +  
Sbjct: 902 VDVVS---YNVLITGLCKDKRISDALDLYEEMKSKGLWPNVTTYITLTGAMYSTGIMQNG 958

Query: 476 YQILREMRKNGLNPDAVTWRILDK 499
            ++L ++ + GL P  V    L++
Sbjct: 959 EELLEDIEERGLIPVYVQLENLER 982



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 83/359 (23%), Positives = 135/359 (37%), Gaps = 88/359 (24%)

Query: 218 GLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNP----------------- 260
           G  G+SD + A K+L  ++ +  +D  RI  IY  A+ ++                    
Sbjct: 74  GSLGKSDGKLALKILSSIVERSGLD--RITYIYCMAVPILIQAQMHSQAMSVLRRLAVMG 131

Query: 261 -------TELLNVL-------------------------------VFMLQTQCQPDVITL 282
                  T LL ++                               +FM     +   I  
Sbjct: 132 FSCTAIFTSLLRIISRFDSTNHVVFELLVKAYVKERKVLDAAVAVLFMDDCGFKASPIAC 191

Query: 283 NTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVM 342
           NT++    + G  +     L + +A  F   D  T   ++  L   G  ++A ++L ++ 
Sbjct: 192 NTILRALVEQGESKYVWLFLRESLAHNF-PLDVTTCNILLNSLCTNGEFRKAEDMLQKMK 250

Query: 343 PQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQL 402
             R  +   VTYN +L    +  R + A  V   M    + AD  TY I+ID LC   + 
Sbjct: 251 TCRLSNS--VTYNTILHWYVKKGRFKAALCVLEDMERDSIPADIYTYNIMIDKLCRIKRS 308

Query: 403 DEA----KRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVC 458
             A    KR   D + P    D   Y  +I G    GKI+ A +    ++     P++  
Sbjct: 309 ARAFLLLKRMRKDDLIP----DECTYNTLINGFFGEGKINHAHYVFNHMLRQTFVPSVAT 364

Query: 459 YNVVIDGACK-------LSMKRE-------------AYQILREMRKNGLNPDAVTWRIL 497
           Y  +IDG C+       LS+  E             A QIL+ M ++G++PD VT+  L
Sbjct: 365 YTTMIDGYCRNRRIDKALSVLSEMQITGVMPSEISKAKQILKSMLEDGIDPDIVTYSAL 423



 Score = 44.3 bits (103), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 46/93 (49%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M  LC  S++ +A  L   M+S     +VVSY  LI G C+   +  A  +++EM+  G+
Sbjct: 876 MHCLCKESKIADALHLKRLMESCRLKVDVVSYNVLITGLCKDKRISDALDLYEEMKSKGL 935

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWER 93
            PN  TY  L   +  T  ++    L+  + ER
Sbjct: 936 WPNVTTYITLTGAMYSTGIMQNGEELLEDIEER 968


>gi|449487696|ref|XP_004157755.1| PREDICTED: uncharacterized protein LOC101223774 [Cucumis sativus]
          Length = 1315

 Score =  174 bits (441), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 127/488 (26%), Positives = 217/488 (44%), Gaps = 43/488 (8%)

Query: 7    LSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLT 66
            + ++ EA  +  DM+++G V        +I        ++ A  VFDEM   GV P+S T
Sbjct: 774  IGKLKEAVDMILDMRNQGLVLTTRVMNRIILVAAEMRLVEYAGNVFDEMSARGVYPDSCT 833

Query: 67   YSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRI 126
            Y  ++ G  R  +V  A+  + ++ ER        V+NA    ++ + C +  VN     
Sbjct: 834  YKYIIVGYCRNGNVLEADRWICEMMER-----GFVVDNATLTLIITAFCEKSLVNR---- 884

Query: 127  AEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK 186
                                           A    + + K GL+P+L++Y+S++ GLCK
Sbjct: 885  -------------------------------AVWFFHKVTKMGLSPNLINYSSMISGLCK 913

Query: 187  HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKA-RKVLQFMLSKKDVDRTR 245
             G   +A++LLEE ++ G+ P+ +T+  L+ GLC +   E+A R  L+ + S        
Sbjct: 914  RGSVKQAFELLEEMVKNGWKPNVYTHTSLIHGLCKKGWTERAFRLFLKLIRSDNYKPNVH 973

Query: 246  ICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM 305
                 +   C  +  +    +   M +    P+  T  T+I+G CK G   +A +++  M
Sbjct: 974  TYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLIDGHCKAGNFSKAYELMELM 1033

Query: 306  VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLR 365
                F  P+  T+ +I+ GL   GR +EA  LL      +  + G VTY  ++    +  
Sbjct: 1034 SNEGF-FPNTCTYNSIVDGLCKRGRAEEAFKLLNTGFQNQIEADG-VTYTILISEQCKRA 1091

Query: 366  RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYA 425
             + +A    N M  +G   D   Y  +I   C  N + ++++ +D+++          Y 
Sbjct: 1092 DMNQALVFLNKMFKVGFQPDIHLYTTLIAAFCRQNMMKDSEKLFDEVIKLGLAPTKETYT 1151

Query: 426  AMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN 485
            +MI G CR  K+  AV F  ++ D G  P+ + Y  +I G CK S   EA Q+   M   
Sbjct: 1152 SMICGYCREKKVSLAVKFFQKMSDHGCAPDSISYGALISGLCKESRLDEARQLYDTMIDK 1211

Query: 486  GLNPDAVT 493
            GL+P  VT
Sbjct: 1212 GLSPCEVT 1219



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 116/487 (23%), Positives = 220/487 (45%), Gaps = 18/487 (3%)

Query: 5    CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
            C    V EA +   +M  RG V +  + T +I  +C    ++ A   F ++   G+ PN 
Sbjct: 842  CRNGNVLEADRWICEMMERGFVVDNATLTLIITAFCEKSLVNRAVWFFHKVTKMGLSPNL 901

Query: 65   LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
            + YS ++ G+ +   V++A    F+L E M  +     N     +L+  LC++G+    F
Sbjct: 902  INYSSMISGLCKRGSVKQA----FELLEEMV-KNGWKPNVYTHTSLIHGLCKKGWTERAF 956

Query: 125  RIAEDMPQGKSVNEEFAC-GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            R+   + +  +          MI   C+  +   A  +   M+++GL P+  +Y +++ G
Sbjct: 957  RLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLIDG 1016

Query: 184  LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
             CK G   +AY+L+E     G+ P+  TY  +V+GLC     E+A K+L      +    
Sbjct: 1017 HCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKLLNTGFQNQIEAD 1076

Query: 244  TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                 I +   C   +  + L  L  M +   QPD+    T+I  FC+   ++++ K+ +
Sbjct: 1077 GVTYTILISEQCKRADMNQALVFLNKMFKVGFQPDIHLYTTLIAAFCRQNMMKDSEKLFD 1136

Query: 304  DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            +++     AP   T+T++I G     ++  A+   +Q M   G +P  ++Y A++ GL +
Sbjct: 1137 EVIKLGL-APTKETYTSMICGYCREKKVSLAVK-FFQKMSDHGCAPDSISYGALISGLCK 1194

Query: 364  LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI---VWPSNIHD 420
              R++EA+++++ M+  G+     T   +    C++     A    + +   +W   +H 
Sbjct: 1195 ESRLDEARQLYDTMIDKGLSPCEVTRVTLTYEYCKTEDFASAMVILERLNKKLWIRTVH- 1253

Query: 421  NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
                  +I+ LC   K+  A  F ++L+D  V  + V      + AC  S K      L 
Sbjct: 1254 -----TLIRKLCCEKKVALAALFFHKLLDKEVNVDRVTL-AAFNTACIESNKYALVSDLS 1307

Query: 481  EMRKNGL 487
            E    G+
Sbjct: 1308 ERISKGI 1314



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 98/354 (27%), Positives = 160/354 (45%), Gaps = 49/354 (13%)

Query: 4    LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEM-RHCGVLP 62
            LC    V +A +L  +M   G  PNV ++T+LIHG C+ G  + A+++F ++ R     P
Sbjct: 911  LCKRGSVKQAFELLEEMVKNGWKPNVYTHTSLIHGLCKKGWTERAFRLFLKLIRSDNYKP 970

Query: 63   NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
            N  TY+ ++ G  +   + RA +    L+ERMK E+ L  N   +  L+D  C+ G  ++
Sbjct: 971  NVHTYTAMISGYCKEEKLSRAEM----LFERMK-EQGLVPNTNTYTTLIDGHCKAGNFSK 1025

Query: 123  VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
             + + E M      NE F                               P+  +YNSIV 
Sbjct: 1026 AYELMELMS-----NEGFF------------------------------PNTCTYNSIVD 1050

Query: 183  GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
            GLCK G    A++LL  G Q        TY +L+   C  +D+ +A   L  M       
Sbjct: 1051 GLCKRGRAEEAFKLLNTGFQNQIEADGVTYTILISEQCKRADMNQALVFLNKMFKVGFQP 1110

Query: 243  RTRICNIYLRALC---LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
               +    + A C   ++K+  +L + ++   +    P   T  ++I G+C+  ++  A+
Sbjct: 1111 DIHLYTTLIAAFCRQNMMKDSEKLFDEVI---KLGLAPTKETYTSMICGYCREKKVSLAV 1167

Query: 300  KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVT 353
            K    M +   CAPD++++  +I GL    R+ EA   LY  M  +G SP  VT
Sbjct: 1168 KFFQKM-SDHGCAPDSISYGALISGLCKESRLDEARQ-LYDTMIDKGLSPCEVT 1219



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/357 (22%), Positives = 149/357 (41%), Gaps = 44/357 (12%)

Query: 145  MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
            M+      G+   A  ++  MR +GL  +    N I+    +      A  + +E    G
Sbjct: 767  MVGVFAEIGKLKEAVDMILDMRNQGLVLTTRVMNRIILVAAEMRLVEYAGNVFDEMSARG 826

Query: 205  YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL 264
              P   TYK ++ G C   ++ +A + +  M+ +  V       + + A C       L+
Sbjct: 827  VYPDSCTYKYIIVGYCRNGNVLEADRWICEMMERGFVVDNATLTLIITAFC----EKSLV 882

Query: 265  NVLVFMLQTQCQ----PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTT 320
            N  V+      +    P++I  +++I+G CK G +++A ++L +MV   +  P+  T T+
Sbjct: 883  NRAVWFFHKVTKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGW-KPNVYTHTS 941

Query: 321  IIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI 380
            +I GL   G  + A  L  +++    Y P + TY A+                       
Sbjct: 942  LIHGLCKKGWTERAFRLFLKLIRSDNYKPNVHTYTAM----------------------- 978

Query: 381  GVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEA 440
                        I G C+  +L  A+  ++ +     + +   Y  +I G C++G   +A
Sbjct: 979  ------------ISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLIDGHCKAGNFSKA 1026

Query: 441  VHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
               +  + + G  PN   YN ++DG CK     EA+++L    +N +  D VT+ IL
Sbjct: 1027 YELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKLLNTGFQNQIEADGVTYTIL 1083



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 92/175 (52%), Gaps = 3/175 (1%)

Query: 328 VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADST 387
           +G+++EA++++   M  +G        N ++     +R VE A  VF+ M   GV  DS 
Sbjct: 774 IGKLKEAVDMILD-MRNQGLVLTTRVMNRIILVAAEMRLVEYAGNVFDEMSARGVYPDSC 832

Query: 388 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYEL 447
           TY  +I G C +  + EA R+  +++    + DN     +I   C    ++ AV F +++
Sbjct: 833 TYKYIIVGYCRNGNVLEADRWICEMMERGFVVDNATLTLIITAFCEKSLVNRAVWFFHKV 892

Query: 448 VDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
              G++PN++ Y+ +I G CK    ++A+++L EM KNG  P+  T   L  +HG
Sbjct: 893 TKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSL--IHG 945



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 128/299 (42%), Gaps = 24/299 (8%)

Query: 212  YKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFML 271
            Y V    L G+ +LE+A +V++ M+                    I    E +++++ M 
Sbjct: 744  YIVCTMSLVGKCNLERAHEVVECMVG---------------VFAEIGKLKEAVDMILDMR 788

Query: 272  QTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRI 331
                      +N +I    +M  +E A  V ++M A +   PD+ T+  II G    G +
Sbjct: 789  NQGLVLTTRVMNRIILVAAEMRLVEYAGNVFDEMSA-RGVYPDSCTYKYIIVGYCRNGNV 847

Query: 332  QEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAI 391
             EA   + ++M +RG+     T   ++        V  A   F+ +  +G+  +   Y+ 
Sbjct: 848  LEADRWICEMM-ERGFVVDNATLTLIITAFCEKSLVNRAVWFFHKVTKMGLSPNLINYSS 906

Query: 392  VIDGLCESNQLDEAKRFWDDIV---WPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELV 448
            +I GLC+   + +A    +++V   W  N+   Y + ++I GLC+ G    A     +L+
Sbjct: 907  MISGLCKRGSVKQAFELLEEMVKNGWKPNV---YTHTSLIHGLCKKGWTERAFRLFLKLI 963

Query: 449  DS-GVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
             S    PN+  Y  +I G CK      A  +   M++ GL P+  T+  L   H   GN
Sbjct: 964  RSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLIDGHCKAGN 1022



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 68/284 (23%), Positives = 127/284 (44%), Gaps = 12/284 (4%)

Query: 1    MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
            +D  C      +A++L   M + G  PN  +Y +++ G C+ G  + A+K+ +      +
Sbjct: 1014 IDGHCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKLLNTGFQNQI 1073

Query: 61   LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
              + +TY++L+    +  D+ +A V + K++ ++  + D+ +    +  L+ + CR+  +
Sbjct: 1074 EADGVTYTILISEQCKRADMNQALVFLNKMF-KVGFQPDIHL----YTTLIAAFCRQNMM 1128

Query: 121  NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
             +  ++ +++ +      +     MI   CR  +   A +    M   G  P  +SY ++
Sbjct: 1129 KDSEKLFDEVIKLGLAPTKETYTSMICGYCREKKVSLAVKFFQKMSDHGCAPDSISYGAL 1188

Query: 181  VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
            + GLCK      A QL +  I  G  P E T   L    C   D   A  +L+  L+KK 
Sbjct: 1189 ISGLCKESRLDEARQLYDTMIDKGLSPCEVTRVTLTYEYCKTEDFASAMVILE-RLNKKL 1247

Query: 241  VDRTRICNIYLRALCLIKNPTELLNVLVF--MLQTQCQPDVITL 282
              RT   +  +R LC  K     L  L F  +L  +   D +TL
Sbjct: 1248 WIRT--VHTLIRKLCCEKKVA--LAALFFHKLLDKEVNVDRVTL 1287


>gi|357473123|ref|XP_003606846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355507901|gb|AES89043.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 624

 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 106/401 (26%), Positives = 203/401 (50%), Gaps = 7/401 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   +  +A      M+  G  PNVV+Y T+I+GYC  G+ + A K+F  M+   + P+
Sbjct: 227 LCREGKWKKAKDFIGHMEVYGVKPNVVTYNTVINGYCLRGKFEAASKIFKTMKDKNLKPD 286

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             TY+  +  + + R +E A+ ++ KL      E  L  N   +  L+D  C +G +++ 
Sbjct: 287 CYTYNSFISRLCKERRIEEASGVLCKLL-----ESGLVPNAVTYNALIDGCCNKGDLDKA 341

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           F   ++M     V   F    +I +L    R   A  ++  MR++G+ P +V+YN  ++G
Sbjct: 342 FAYRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREKGVEPDVVTYNIQING 401

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            C+ G   +A  L +E ++    P+  TY  L++     + + +A +  +  + +  +  
Sbjct: 402 YCRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDVFGKRNRMSEAEEKFKKSIKEGMLPD 461

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
             + N  +   C+  N      +L  M   +  PD +T NT++ G+C+  ++EEA K+L+
Sbjct: 462 IIMFNALIDGHCVNGNIDRAFQLLKEMDNAKVVPDEVTFNTLMQGYCRERKVEEAKKLLD 521

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           +M   +   PD +++ T+I G    G +++AL  ++  M   G+ P ++TYNA+++G  +
Sbjct: 522 EM-KERGIKPDHISYNTLISGYSKRGDMKDALE-VFDEMLSLGFDPTLLTYNALIQGYSK 579

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 404
           +   + A+E+   M   G+  D +TY  VI+ +  ++ L E
Sbjct: 580 IGEADHAEELLREMQSKGITPDDSTYLYVIEAMKTNDDLVE 620



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 124/478 (25%), Positives = 232/478 (48%), Gaps = 15/478 (3%)

Query: 21  KSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDV 80
           ++R +V   + +  L+  YC+  + D A +  + M+   ++P + T + L+  +L+   +
Sbjct: 139 RNRLNVKTTLVFDLLLSAYCQFRKPDEALECLNLMKENEIIPKTETCNSLLSLLLKLNKI 198

Query: 81  ERANVLMFKLWERMKEEEDLSVNNA--AFANLVDSLCREGYVNEVFRIAEDMPQGKSVNE 138
           + A       W   +E   +++ ++   F  +++ LCREG   +       M        
Sbjct: 199 KMA-------WFVYEEMVKMNIKSSIVTFNIMINILCREGKWKKAKDFIGHMEVYGVKPN 251

Query: 139 EFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLE 198
                 +I+  C  G+   AS++   M+ + L P   +YNS +  LCK      A  +L 
Sbjct: 252 VVTYNTVINGYCLRGKFEAASKIFKTMKDKNLKPDCYTYNSFISRLCKERRIEEASGVLC 311

Query: 199 EGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIK 258
           + ++ G +P+  TY  L++G C + DL+KA      M+++  V      N+ + AL L K
Sbjct: 312 KLLESGLVPNAVTYNALIDGCCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHALFLEK 371

Query: 259 NPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTF 318
              E  +++  M +   +PDV+T N  ING+C+ G  ++AL + ++MV  K   P   T+
Sbjct: 372 RIEEAEDMIKEMREKGVEPDVVTYNIQINGYCRCGNAKKALSLFDEMVE-KNIRPTVETY 430

Query: 319 TTII--FGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNC 376
           T++I  FG  N  R+ EA     + + + G  P I+ +NA++ G      ++ A ++   
Sbjct: 431 TSLIDVFGKRN--RMSEAEEKFKKSI-KEGMLPDIIMFNALIDGHCVNGNIDRAFQLLKE 487

Query: 377 MLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGK 436
           M    VV D  T+  ++ G C   +++EAK+  D++       D+  Y  +I G  + G 
Sbjct: 488 MDNAKVVPDEVTFNTLMQGYCRERKVEEAKKLLDEMKERGIKPDHISYNTLISGYSKRGD 547

Query: 437 IHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
           + +A+    E++  G  P ++ YN +I G  K+     A ++LREM+  G+ PD  T+
Sbjct: 548 MKDALEVFDEMLSLGFDPTLLTYNALIQGYSKIGEADHAEELLREMQSKGITPDDSTY 605



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 90/342 (26%), Positives = 169/342 (49%), Gaps = 2/342 (0%)

Query: 165 MRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESD 224
           M K  +  S+V++N +++ LC+ G   +A   +     +G  P+  TY  ++ G C    
Sbjct: 208 MVKMNIKSSIVTFNIMINILCREGKWKKAKDFIGHMEVYGVKPNVVTYNTVINGYCLRGK 267

Query: 225 LEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNT 284
            E A K+ + M  K         N ++  LC  +   E   VL  +L++   P+ +T N 
Sbjct: 268 FEAASKIFKTMKDKNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLVPNAVTYNA 327

Query: 285 VINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ 344
           +I+G C  G +++A    ++M+     A    T+  +I  L    RI+EA +++ + M +
Sbjct: 328 LIDGCCNKGDLDKAFAYRDEMMNRGIVA-SVFTYNLLIHALFLEKRIEEAEDMIKE-MRE 385

Query: 345 RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 404
           +G  P +VTYN  + G  R    ++A  +F+ M+   +     TY  +ID   + N++ E
Sbjct: 386 KGVEPDVVTYNIQINGYCRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDVFGKRNRMSE 445

Query: 405 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
           A+  +   +    + D  ++ A+I G C +G I  A   L E+ ++ V P+ V +N ++ 
Sbjct: 446 AEEKFKKSIKEGMLPDIIMFNALIDGHCVNGNIDRAFQLLKEMDNAKVVPDEVTFNTLMQ 505

Query: 465 GACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           G C+     EA ++L EM++ G+ PD +++  L   +  RG+
Sbjct: 506 GYCRERKVEEAKKLLDEMKERGIKPDHISYNTLISGYSKRGD 547



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 91/361 (25%), Positives = 168/361 (46%), Gaps = 42/361 (11%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           + +LC   R+ EA  +   +   G VPN V+Y  LI G C  G++D A+   DEM + G+
Sbjct: 294 ISRLCKERRIEEASGVLCKLLESGLVPNAVTYNALIDGCCNKGDLDKAFAYRDEMMNRGI 353

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           + +  TY++L+  +   + +E A  ++ ++ E+  E + ++ N       ++  CR G  
Sbjct: 354 VASVFTYNLLIHALFLEKRIEEAEDMIKEMREKGVEPDVVTYNIQ-----INGYCRCGNA 408

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +   + ++M +            +ID   +  R   A        K G+ P ++ +N++
Sbjct: 409 KKALSLFDEMVEKNIRPTVETYTSLIDVFGKRNRMSEAEEKFKKSIKEGMLPDIIMFNAL 468

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G C +G   RA+QLL+E      +P E T+  L++G C E  +E+A+K+L  M  +  
Sbjct: 469 IDGHCVNGNIDRAFQLLKEMDNAKVVPDEVTFNTLMQGYCRERKVEEAKKLLDEMKER-- 526

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                              +PD I+ NT+I+G+ K G +++AL+
Sbjct: 527 ---------------------------------GIKPDHISYNTLISGYSKRGDMKDALE 553

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           V ++M++  F  P  +T+  +I G   +G    A  LL + M  +G +P   TY  V+  
Sbjct: 554 VFDEMLSLGF-DPTLLTYNALIQGYSKIGEADHAEELLRE-MQSKGITPDDSTYLYVIEA 611

Query: 361 L 361
           +
Sbjct: 612 M 612



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 143/295 (48%), Gaps = 4/295 (1%)

Query: 212 YKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFML 271
           + +L+   C     ++A + L  M   + + +T  CN  L  L  +        V   M+
Sbjct: 150 FDLLLSAYCQFRKPDEALECLNLMKENEIIPKTETCNSLLSLLLKLNKIKMAWFVYEEMV 209

Query: 272 QTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM-VAGKFCAPDAVTFTTIIFGLLNVGR 330
           +   +  ++T N +IN  C+ G+ ++A   +  M V G    P+ VT+ T+I G    G+
Sbjct: 210 KMNIKSSIVTFNIMINILCREGKWKKAKDFIGHMEVYG--VKPNVVTYNTVINGYCLRGK 267

Query: 331 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYA 390
             EA + +++ M  +   P   TYN+ +  L + RR+EEA  V   +L  G+V ++ TY 
Sbjct: 268 F-EAASKIFKTMKDKNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLVPNAVTYN 326

Query: 391 IVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 450
            +IDG C    LD+A  + D+++    +   + Y  +I  L    +I EA   + E+ + 
Sbjct: 327 ALIDGCCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREK 386

Query: 451 GVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
           GV P++V YN+ I+G C+    ++A  +  EM +  + P   T+  L  + G R 
Sbjct: 387 GVEPDVVTYNIQINGYCRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDVFGKRN 441


>gi|125539409|gb|EAY85804.1| hypothetical protein OsI_07165 [Oryza sativa Indica Group]
          Length = 649

 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 135/539 (25%), Positives = 246/539 (45%), Gaps = 74/539 (13%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C   R+ +A ++    ++ G   NVV+YT LI GYCR+G +D A ++   M    V P++
Sbjct: 135 CRDGRLADAERVLGAARATGAA-NVVTYTALIDGYCRSGRLDDALRLIASM---PVAPDT 190

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSV------NNAAFANLVDSLCREG 118
            TY+ +++G           + + K WE  +E     +      N   FA  + S C+ G
Sbjct: 191 YTYNTVLKG-----------LCIAKKWEEAEELMAEMIRNRCPPNEVTFATQIRSFCQNG 239

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
            ++   ++ + MP+     +      +I+     G    A  ++  M  +   P+ V YN
Sbjct: 240 LLDRAVQLLDQMPRYGCTPDVVIYSTLINGFSEQGHVDQALDLLNTMLCK---PNTVCYN 296

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
           + + GLC         +L+ E ++ G  P+E T+ +L+  LC  + ++ A +VL+ M   
Sbjct: 297 AALKGLCIAERWEDIGELMAEMVRKGCSPNEATFSMLISSLCQNNLVDSAVEVLEQMEKY 356

Query: 239 KDVDRTRICNIYLRALC---LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 295
                T   NI + +L     + +   LLN +V      C+PD +  N V+ GFC+  R 
Sbjct: 357 GCEPDTVNYNIIINSLSERGRVDDALRLLNSMV------CKPDALGFNAVLKGFCRAERW 410

Query: 296 EEALKVLNDM-------VAGKF---------------------------CAPDAVTFTTI 321
            +A +++  M       +   F                           C PD VT++++
Sbjct: 411 HDASELIAQMFRDDCPLIEMTFNILIDTLCQNGLVNYATQVFEQMPRYRCTPDIVTYSSL 470

Query: 322 IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG 381
           + G    G ++ A+  L++ MP +   P I +YNAVL+GL R  R E+A E+   M+G  
Sbjct: 471 LNGFSEQGLVEVAIQ-LFRSMPCK---PDIFSYNAVLKGLCRAARWEDAGELIAEMVGKD 526

Query: 382 VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAV 441
              +  T+ I+I+ LC+   +D A    + +    +  D + Y A+I G    G++ +A+
Sbjct: 527 CPPNEVTFNILINSLCQKGLVDRAIEVLEQMPNYGSTPDIFTYNALINGFSEQGRLDDAL 586

Query: 442 HFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKL 500
             L  +      P+ + YN  + G C+    ++A +++ EM +N   P+ VT++  + L
Sbjct: 587 KLLSTM---SCKPDAISYNSTLKGLCRAERWQDAEELVAEMLRNKCTPNEVTFKYANHL 642



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 100/390 (25%), Positives = 180/390 (46%), Gaps = 42/390 (10%)

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
            +C  +I  LC +GR   A RV+  ++        VS+N++V G C+ G    A ++L  
Sbjct: 91  ISCNILIKKLCATGRLADAERVLDALKAAAAA-DAVSHNTLVAGYCRDGRLADAERVLGA 149

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
               G   +  TY  L++G C    L+ A +++  M    D   T   N  L+ LC+ K 
Sbjct: 150 ARATGAA-NVVTYTALIDGYCRSGRLDDALRLIASMPVAPD---TYTYNTVLKGLCIAKK 205

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
             E   ++  M++ +C P+ +T  T I  FC+ G ++ A+++L D +    C PD V ++
Sbjct: 206 WEEAEELMAEMIRNRCPPNEVTFATQIRSFCQNGLLDRAVQLL-DQMPRYGCTPDVVIYS 264

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
           T+I G    G + +AL+LL  ++ +    P  V YNA L+GL    R E+  E+   M+ 
Sbjct: 265 TLINGFSEQGHVDQALDLLNTMLCK----PNTVCYNAALKGLCIAERWEDIGELMAEMVR 320

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI----VWPSNIHDNYV------------ 423
            G   +  T++++I  LC++N +D A    + +      P  ++ N +            
Sbjct: 321 KGCSPNEATFSMLISSLCQNNLVDSAVEVLEQMEKYGCEPDTVNYNIIINSLSERGRVDD 380

Query: 424 ----------------YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGAC 467
                           + A++KG CR+ + H+A   + ++         + +N++ID  C
Sbjct: 381 ALRLLNSMVCKPDALGFNAVLKGFCRAERWHDASELIAQMFRDDCPLIEMTFNILIDTLC 440

Query: 468 KLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           +  +   A Q+  +M +    PD VT+  L
Sbjct: 441 QNGLVNYATQVFEQMPRYRCTPDIVTYSSL 470



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/236 (26%), Positives = 120/236 (50%), Gaps = 9/236 (3%)

Query: 278 DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNL 337
           +V+T   +I+G+C+ GR+++AL+++  M      APD  T+ T++ GL    + +EA  L
Sbjct: 157 NVVTYTALIDGYCRSGRLDDALRLIASMPV----APDTYTYNTVLKGLCIAKKWEEAEEL 212

Query: 338 LYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLC 397
           + +++  R   P  VT+   +R   +   ++ A ++ + M   G   D   Y+ +I+G  
Sbjct: 213 MAEMIRNR-CPPNEVTFATQIRSFCQNGLLDRAVQLLDQMPRYGCTPDVVIYSTLINGFS 271

Query: 398 ESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIV 457
           E   +D+A    + ++   N      Y A +KGLC + +  +    + E+V  G +PN  
Sbjct: 272 EQGHVDQALDLLNTMLCKPN---TVCYNAALKGLCIAERWEDIGELMAEMVRKGCSPNEA 328

Query: 458 CYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN-DFGLRI 512
            ++++I   C+ ++   A ++L +M K G  PD V + I+      RG  D  LR+
Sbjct: 329 TFSMLISSLCQNNLVDSAVEVLEQMEKYGCEPDTVNYNIIINSLSERGRVDDALRL 384


>gi|4038037|gb|AAC97219.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1107

 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 121/495 (24%), Positives = 238/495 (48%), Gaps = 12/495 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           + +   L +  +  + F DM   G  P V +Y  +I   C+ G+++ A  +F+EM+  G+
Sbjct: 102 LHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGL 161

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P+++TY+ ++ G  +   ++   V  F+  + M  E D+   NA    L++  C+ G +
Sbjct: 162 VPDTVTYNSMIDGFGKVGRLDDT-VCFFEEMKDMCCEPDVITYNA----LINCFCKFGKL 216

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                   +M          +   ++D+ C+ G    A +    MR+ GL P+  +Y S+
Sbjct: 217 PIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSL 276

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +   CK G    A++L  E +Q G   +  TY  L++GLC    +++A ++   M +   
Sbjct: 277 IDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGV 336

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           +      N  +      KN    L +L  +     +PD++   T I G C + +IE A  
Sbjct: 337 IPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKV 396

Query: 301 VLNDMVAGKFCA--PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
           V+N+M   K C    +++ +TT++      G   E L+LL + M +      +VT+  ++
Sbjct: 397 VMNEM---KECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDE-MKELDIEVTVVTFCVLI 452

Query: 359 RGLFRLRRVEEAKEVFNCMLG-IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 417
            GL + + V +A + FN +    G+ A++  +  +IDGLC+ NQ++ A   ++ +V    
Sbjct: 453 DGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGL 512

Query: 418 IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQ 477
           + D   Y +++ G  + G + EA+    ++ + G+  +++ Y  ++ G    +  ++A  
Sbjct: 513 VPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARS 572

Query: 478 ILREMRKNGLNPDAV 492
            L EM   G++PD V
Sbjct: 573 FLEEMIGEGIHPDEV 587



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 117/495 (23%), Positives = 225/495 (45%), Gaps = 8/495 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           L  L  + EA + F  MK     P   S   L+H + + G+ D   + F +M   G  P 
Sbjct: 70  LIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPT 129

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             TY++++  + +  DVE A      L+E MK    L  +   + +++D   + G +++ 
Sbjct: 130 VFTYNIMIDCMCKEGDVEAAR----GLFEEMK-FRGLVPDTVTYNSMIDGFGKVGRLDDT 184

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
               E+M       +      +I+  C+ G+          M+  GL P++VSY+++V  
Sbjct: 185 VCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDA 244

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK G   +A +   +  + G +P+E+TY  L++  C   +L  A ++   ML       
Sbjct: 245 FCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWN 304

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                  +  LC  +   E   +   M      P++ + N +I+GF K   ++ AL++LN
Sbjct: 305 VVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLN 364

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           ++  G+   PD + + T I+GL ++ +I EA  ++   M + G     + Y  ++   F+
Sbjct: 365 EL-KGRGIKPDLLLYGTFIWGLCSLEKI-EAAKVVMNEMKECGIKANSLIYTTLMDAYFK 422

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN-Y 422
                E   + + M  + +     T+ ++IDGLC++  + +A  +++ I     +  N  
Sbjct: 423 SGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAA 482

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
           ++ AMI GLC+  ++  A     ++V  G+ P+   Y  ++DG  K     EA  +  +M
Sbjct: 483 IFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKM 542

Query: 483 RKNGLNPDAVTWRIL 497
            + G+  D + +  L
Sbjct: 543 AEIGMKLDLLAYTSL 557



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 118/496 (23%), Positives = 229/496 (46%), Gaps = 15/496 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D +C    V  A  LF +MK RG VP+ V+Y ++I G+ + G +D     F+EM+    
Sbjct: 137 IDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCC 196

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TY+ L+    +   +     +  + +  MK    L  N  +++ LVD+ C+EG +
Sbjct: 197 EPDVITYNALINCFCKFGKLP----IGLEFYREMKGN-GLKPNVVSYSTLVDAFCKEGMM 251

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +  +   DM +   V  E+    +ID+ C+ G    A R+   M + G+  ++V+Y ++
Sbjct: 252 QQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTAL 311

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GLC       A +L  +    G +P+  +Y  L+ G     ++++A ++L  +  +  
Sbjct: 312 IDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGI 371

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                +   ++  LC ++       V+  M +   + + +   T+++ + K G   E L 
Sbjct: 372 KPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLH 431

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +L++M          VTF  +I GL     + +A++   ++    G       + A++ G
Sbjct: 432 LLDEMKELDI-EVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDG 490

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L +  +VE A  +F  M+  G+V D T Y  ++DG  +   + EA    D +       D
Sbjct: 491 LCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLD 550

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN-IVCYNVV--------IDGACKLSM 471
              Y +++ GL    ++ +A  FL E++  G+ P+ ++C +V+        ID A +L  
Sbjct: 551 LLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPDEVLCISVLKKHYELGCIDEAVELQS 610

Query: 472 KREAYQILREMRKNGL 487
               +Q+L     N L
Sbjct: 611 YLMKHQLLTSDNDNAL 626



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 89/342 (26%), Positives = 165/342 (48%), Gaps = 2/342 (0%)

Query: 165 MRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESD 224
           M++  + P   S N ++H   K G      +  ++ I  G  P+  TY ++++ +C E D
Sbjct: 86  MKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGD 145

Query: 225 LEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNT 284
           +E AR + + M  +  V  T   N  +     +    + +     M    C+PDVIT N 
Sbjct: 146 VEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNA 205

Query: 285 VINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ 344
           +IN FCK G++   L+   +M  G    P+ V+++T++      G +Q+A+   Y  M +
Sbjct: 206 LINCFCKFGKLPIGLEFYREM-KGNGLKPNVVSYSTLVDAFCKEGMMQQAIKF-YVDMRR 263

Query: 345 RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 404
            G  P   TY +++    ++  + +A  + N ML +GV  +  TY  +IDGLC++ ++ E
Sbjct: 264 VGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKE 323

Query: 405 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
           A+  +  +     I +   Y A+I G  ++  +  A+  L EL   G+ P+++ Y   I 
Sbjct: 324 AEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIW 383

Query: 465 GACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           G C L     A  ++ EM++ G+  +++ +  L   +   GN
Sbjct: 384 GLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGN 425



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/280 (25%), Positives = 134/280 (47%), Gaps = 8/280 (2%)

Query: 225 LEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNT 284
           LE+A +    M   +   +TR CN  L     +    ++      M+    +P V T N 
Sbjct: 76  LEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNI 135

Query: 285 VINGFCKMGRIEEALKVLNDMVAGKF--CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVM 342
           +I+  CK G +E A  +  +M   KF    PD VT+ ++I G   VGR+ + +   ++ M
Sbjct: 136 MIDCMCKEGDVEAARGLFEEM---KFRGLVPDTVTYNSMIDGFGKVGRLDDTV-CFFEEM 191

Query: 343 PQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQL 402
                 P ++TYNA++    +  ++    E +  M G G+  +  +Y+ ++D  C+   +
Sbjct: 192 KDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMM 251

Query: 403 DEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVV 462
            +A +F+ D+     + + Y Y ++I   C+ G + +A     E++  GV  N+V Y  +
Sbjct: 252 QQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTAL 311

Query: 463 IDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
           IDG C     +EA ++  +M   G+ P+  ++  L  +HG
Sbjct: 312 IDGLCDAERMKEAEELFGKMDTAGVIPNLASYNAL--IHG 349



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 94/187 (50%), Gaps = 1/187 (0%)

Query: 311 CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEA 370
           C P    F  +   L+++G ++EA+    ++   R + P   + N +L    +L + ++ 
Sbjct: 56  CVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVF-PKTRSCNGLLHRFAKLGKTDDV 114

Query: 371 KEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKG 430
           K  F  M+G G      TY I+ID +C+   ++ A+  ++++ +   + D   Y +MI G
Sbjct: 115 KRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDG 174

Query: 431 LCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD 490
             + G++ + V F  E+ D    P+++ YN +I+  CK        +  REM+ NGL P+
Sbjct: 175 FGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPN 234

Query: 491 AVTWRIL 497
            V++  L
Sbjct: 235 VVSYSTL 241


>gi|357485117|ref|XP_003612846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355514181|gb|AES95804.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 892

 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 121/506 (23%), Positives = 237/506 (46%), Gaps = 19/506 (3%)

Query: 8   SRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCR----TGEMDVAYKVFDEMRHCGVLPN 63
           +RV     LF  +   G  PN+ +YT +++ +CR    + ++  A ++  ++   G  PN
Sbjct: 185 NRVDGVRLLFEVLIKFGPRPNIHTYTIMMNFFCRGVGCSVDIRRASEILGKIYMSGETPN 244

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKE---EEDLSVNNAAFANLVDSLCREGYV 120
            +TY   ++G+ +        V +F +  R+ +    ++  +NN  F  ++  LC+ G +
Sbjct: 245 VVTYGTYIKGLCK--------VGLFGVAWRLIQNLCRKNQPLNNHCFNAVIYGLCQGGIL 296

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E   + ++M     + + ++   +ID  CR GR   AS V   MR  G+ P++ SY+ +
Sbjct: 297 DEASEVFKEMKNSGILPDVYSYSILIDGFCRKGRVDQASEVFKEMRNSGILPNIYSYSIL 356

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK- 239
           + G CK G   +A ++ EE    G LP  ++Y +L++G C + D++ A K  + M S   
Sbjct: 357 IDGFCKEGRVDKALEVFEEMKNSGILPDVYSYSILIDGFCRKGDMDSAIKFWEEMTSNNF 416

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                  C++ ++     K     L     M +    PD I  N +++ +C+     +AL
Sbjct: 417 SPSAFNYCSL-IKGYYKSKQFANALKEFRIMQKLGMWPDTIACNHILSIYCRKPDFNKAL 475

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
             L++         +  ++   I  +      ++AL LL  VM +R   P +V Y+ ++ 
Sbjct: 476 -ALSEKFQENGVHFNPYSYNEFIHRICRGSVPEKALQLL-PVMLKRNVLPDVVNYSTLIS 533

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
              +    E+A  +F  M  +G+  +  TY I+I+      ++D A R +  +       
Sbjct: 534 CFAKRLNSEKAVMLFIKMTKVGITFNVKTYTILINLFISDCKMDVAYRLFKGMKESRVYP 593

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           D   Y +++ G C +G++  A     E+   G +PN+V Y   I+   KL+   +A+++ 
Sbjct: 594 DQIAYTSLVAGFCNTGEMTRARALFDEMSREGCSPNVVTYTCFINEYLKLNKNNQAHKLY 653

Query: 480 REMRKNGLNPDAVTWRILDKLHGNRG 505
            +M++ G+ PD + + +L     N G
Sbjct: 654 EKMKERGVYPDQILYTMLIAAFCNTG 679



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 125/487 (25%), Positives = 229/487 (47%), Gaps = 45/487 (9%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC    + EA ++F +MK+ G +P+V SY+ LI G+CR G +D A +VF EMR+ G+LPN
Sbjct: 290 LCQGGILDEASEVFKEMKNSGILPDVYSYSILIDGFCRKGRVDQASEVFKEMRNSGILPN 349

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             +YS+L+ G  +   V++A     +++E MK    L  +  +++ L+D  CR+G ++  
Sbjct: 350 IYSYSILIDGFCKEGRVDKA----LEVFEEMKNSGILP-DVYSYSILIDGFCRKGDMDSA 404

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            +  E+M         F    +I    +S +   A +   +M+K G+ P  ++ N I+  
Sbjct: 405 IKFWEEMTSNNFSPSAFNYCSLIKGYYKSKQFANALKEFRIMQKLGMWPDTIACNHILSI 464

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            C+     +A  L E+  + G   + ++Y   +  +C  S  EKA ++L  ML +  +  
Sbjct: 465 YCRKPDFNKALALSEKFQENGVHFNPYSYNEFIHRICRGSVPEKALQLLPVMLKRNVL-- 522

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQC--QPDVITLNTVINGFCKMGRIEEALKV 301
             + N      C  K       V++F+  T+     +V T   +IN F    +++ A ++
Sbjct: 523 PDVVNYSTLISCFAKRLNSEKAVMLFIKMTKVGITFNVKTYTILINLFISDCKMDVAYRL 582

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
              M   +   PD + +T+++ G  N G +  A   L+  M + G SP +VTY   +   
Sbjct: 583 FKGMKESR-VYPDQIAYTSLVAGFCNTGEMTRA-RALFDEMSREGCSPNVVTYTCFINEY 640

Query: 362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
            +L +  +A +++  M   GV  D   Y ++I   C + +++ A+  +D++         
Sbjct: 641 LKLNKNNQAHKLYEKMKERGVYPDQILYTMLIAAFCNTGEMNRAEALFDEMKQ------- 693

Query: 422 YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
                  +G C                    TPN+V Y  +I+   KL+ + +A ++  E
Sbjct: 694 -------EGRC--------------------TPNVVMYTCLINSYIKLNKRDQAEKLYEE 726

Query: 482 MRKNGLN 488
           MR  GL+
Sbjct: 727 MRAKGLS 733



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 108/451 (23%), Positives = 183/451 (40%), Gaps = 82/451 (18%)

Query: 99  DLSVNNAAFANLVDSLCREG---YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRN 155
           D+  +N  F  L+          + N VF  A+D   G  +N   +C  ++  L    R 
Sbjct: 131 DVEKSNVVFDMLIKVFASNSMLEHANYVFVRAKD--DGIELNI-MSCNFLLKCLVEDNRV 187

Query: 156 HGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCM----RAYQLLEEGIQFGYLPSEHT 211
            G   +  V+ K G  P++ +Y  +++  C+  GC     RA ++L +    G  P+  T
Sbjct: 188 DGVRLLFEVLIKFGPRPNIHTYTIMMNFFCRGVGCSVDIRRASEILGKIYMSGETPNVVT 247

Query: 212 YKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFML 271
           Y   ++GLC       A +++Q                    LC    P          L
Sbjct: 248 YGTYIKGLCKVGLFGVAWRLIQ-------------------NLCRKNQP----------L 278

Query: 272 QTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRI 331
              C       N VI G C+ G ++EA +V  +M       PD  +++ +I G    GR+
Sbjct: 279 NNHC------FNAVIYGLCQGGILDEASEVFKEMKNSGI-LPDVYSYSILIDGFCRKGRV 331

Query: 332 QEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAI 391
            +A + +++ M   G  P I +Y+ ++ G  +  RV++A EVF  M   G++ D  +Y+I
Sbjct: 332 DQA-SEVFKEMRNSGILPNIYSYSILIDGFCKEGRVDKALEVFEEMKNSGILPDVYSYSI 390

Query: 392 VIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL-------------------- 431
           +IDG C    +D A +FW+++   +     + Y ++IKG                     
Sbjct: 391 LIDGFCRKGDMDSAIKFWEEMTSNNFSPSAFNYCSLIKGYYKSKQFANALKEFRIMQKLG 450

Query: 432 ---------------CRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAY 476
                          CR    ++A+    +  ++GV  N   YN  I   C+ S+  +A 
Sbjct: 451 MWPDTIACNHILSIYCRKPDFNKALALSEKFQENGVHFNPYSYNEFIHRICRGSVPEKAL 510

Query: 477 QILREMRKNGLNPDAVTWRILDKLHGNRGND 507
           Q+L  M K  + PD V +  L      R N 
Sbjct: 511 QLLPVMLKRNVLPDVVNYSTLISCFAKRLNS 541



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 93/351 (26%), Positives = 172/351 (49%), Gaps = 32/351 (9%)

Query: 169 GLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQF--------GYL--------PSEHTY 212
           G   S+ S++ I+H     G     + L+ + + F        G L         S   +
Sbjct: 80  GFENSINSFSIIIHTYALAGMSWEVFILIRDIVTFYKEENRDAGELVSLLLDVEKSNVVF 139

Query: 213 KVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRI--CNIYLRALCLIK-NPTELLNVLV- 268
            +L++     S LE A  V  F+ +K D     I  CN  L+  CL++ N  + + +L  
Sbjct: 140 DMLIKVFASNSMLEHANYV--FVRAKDDGIELNIMSCNFLLK--CLVEDNRVDGVRLLFE 195

Query: 269 FMLQTQCQPDVITLNTVINGFCK-MG---RIEEALKVLNDM-VAGKFCAPDAVTFTTIIF 323
            +++   +P++ T   ++N FC+ +G    I  A ++L  + ++G+   P+ VT+ T I 
Sbjct: 196 VLIKFGPRPNIHTYTIMMNFFCRGVGCSVDIRRASEILGKIYMSGE--TPNVVTYGTYIK 253

Query: 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 383
           GL  VG    A  L+ Q + ++        +NAV+ GL +   ++EA EVF  M   G++
Sbjct: 254 GLCKVGLFGVAWRLI-QNLCRKNQPLNNHCFNAVIYGLCQGGILDEASEVFKEMKNSGIL 312

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
            D  +Y+I+IDG C   ++D+A   + ++     + + Y Y+ +I G C+ G++ +A+  
Sbjct: 313 PDVYSYSILIDGFCRKGRVDQASEVFKEMRNSGILPNIYSYSILIDGFCKEGRVDKALEV 372

Query: 444 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
             E+ +SG+ P++  Y+++IDG C+      A +   EM  N  +P A  +
Sbjct: 373 FEEMKNSGILPDVYSYSILIDGFCRKGDMDSAIKFWEEMTSNNFSPSAFNY 423


>gi|346703736|emb|CBX24404.1| hypothetical_protein [Oryza glaberrima]
          Length = 1765

 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 117/418 (27%), Positives = 200/418 (47%), Gaps = 2/418 (0%)

Query: 89   KLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDS 148
            K+ ER++E+            L+  L  +   ++  ++ ++M    S  + ++   ++  
Sbjct: 1097 KMCERVREQYGSLPEVTHCNRLLKLLVEQRRWDDARKLYDEMLGKDSGADNYSTCVLVRG 1156

Query: 149  LCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPS 208
            LC   R     +++      G  P +V YN ++ G C+ G   R   LL E    G+LP+
Sbjct: 1157 LCLERRVEEGLKLIEARWGAGCIPHVVFYNVLIDGYCRRGDMGRGLLLLGEMETKGFLPT 1216

Query: 209  EHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLV 268
              TY  L+  L  + DLEK   +   M  +      +I N  + ALC  ++ T+ + +L 
Sbjct: 1217 LVTYGSLINWLGKKGDLEKIGSLFLEMRKRGFSPNVQIYNSVIDALCKCRSATQAMVILK 1276

Query: 269  FMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNV 328
             M  + C PD+IT NT+I G C  G + +A   L + +  +   P+ +++T +I G    
Sbjct: 1277 QMFASGCDPDIITFNTLITGLCHEGHVRKAEHFLREAIRREL-NPNQLSYTPLIHGFCMR 1335

Query: 329  GRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTT 388
            G +  A +LL ++M  RG++P +VT+ A++ GL    +V EA  V   M    V  D   
Sbjct: 1336 GELMVASDLLVEMM-GRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNI 1394

Query: 389  YAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELV 448
            Y ++I GLC+   L  AK   ++++  +   D +VYA +I G  RS  + +A      + 
Sbjct: 1395 YNVLISGLCKKRMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSENLGDARKIFEFME 1454

Query: 449  DSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
              G+ P+IV  N +I G C+  M  EA   +  MRK G  PD  T+  +   +  +GN
Sbjct: 1455 HKGICPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKVGCIPDEFTYTTVISGYAKQGN 1512



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 122/509 (23%), Positives = 238/509 (46%), Gaps = 22/509 (4%)

Query: 1    MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
            +D  C    +G    L  +M+++G +P +V+Y +LI+   + G+++    +F EMR  G 
Sbjct: 1189 IDGYCRRGDMGRGLLLLGEMETKGFLPTLVTYGSLINWLGKKGDLEKIGSLFLEMRKRGF 1248

Query: 61   LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             PN   Y+ ++  + + R   +A V++ +++    + + ++ N      L+  LC EG+V
Sbjct: 1249 SPNVQIYNSVIDALCKCRSATQAMVILKQMFASGCDPDIITFN-----TLITGLCHEGHV 1303

Query: 121  NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
             +      +  + +    + +   +I   C  G    AS ++  M  RG TP +V++ ++
Sbjct: 1304 RKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGELMVASDLLVEMMGRGHTPDVVTFGAL 1363

Query: 181  VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
            +HGL   G    A  + E+  +    P  + Y VL+ GLC +  L  A+ +L+ ML K  
Sbjct: 1364 IHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCKKRMLPAAKNILEEMLEKNV 1423

Query: 241  VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                 +    +      +N  +   +  FM      PD+++ N +I G+C+ G + EA+ 
Sbjct: 1424 QPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGICPDIVSCNAMIKGYCQFGMMSEAIL 1483

Query: 301  VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
             +++M     C PD  T+TT+I G    G +  AL  L   M +R   P +VTY++++ G
Sbjct: 1484 CMSNMRKVG-CIPDEFTYTTVISGYAKQGNLNGALRWLCD-MIKRKCKPNVVTYSSLING 1541

Query: 361  LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
              +    + A+ +F  M    +  +  TY I+I  L + +++  A  +++ ++      +
Sbjct: 1542 YCKTGDTDFAEGLFANMQAEALSPNVVTYTILIGSLFKKDKVLRAGLYFETMLLNHCSPN 1601

Query: 421  NYVYAAMIKGL------------CRSGKIH--EAVHFLY-ELVDSGVTPNIVCYNVVIDG 465
            +     ++ GL            C + ++H  +A+  ++ +LV     P    YN +I  
Sbjct: 1602 DVTLHYLVNGLTSCTPCVINSICCNTSEVHGKDALLVVFKKLVFDIGDPRNSAYNAIIFS 1661

Query: 466  ACKLSMKREAYQILREMRKNGLNPDAVTW 494
             C+ +M REA      M K G  P+ +T+
Sbjct: 1662 LCRHNMLREALDFKNRMAKKGYVPNPITF 1690



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 127/494 (25%), Positives = 212/494 (42%), Gaps = 42/494 (8%)

Query: 4    LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            LC   RV E  KL       G +P+VV Y  LI GYCR G+M     +  EM   G LP 
Sbjct: 1157 LCLERRVEEGLKLIEARWGAGCIPHVVFYNVLIDGYCRRGDMGRGLLLLGEMETKGFLPT 1216

Query: 64   SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             +TY  L+  + +  D+E+   L  ++ +R       S N   + +++D+LC+       
Sbjct: 1217 LVTYGSLINWLGKKGDLEKIGSLFLEMRKR-----GFSPNVQIYNSVIDALCK------- 1264

Query: 124  FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
                                      CRS     A  ++  M   G  P ++++N+++ G
Sbjct: 1265 --------------------------CRSATQ--AMVILKQMFASGCDPDIITFNTLITG 1296

Query: 184  LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            LC  G   +A   L E I+    P++ +Y  L+ G C   +L  A  +L  M+ +     
Sbjct: 1297 LCHEGHVRKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGELMVASDLLVEMMGRGHTPD 1356

Query: 244  TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                   +  L +    +E L V   M + Q  PDV   N +I+G CK   +  A  +L 
Sbjct: 1357 VVTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCKKRMLPAAKNILE 1416

Query: 304  DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            +M+  K   PD   + T+I G +    + +A  + ++ M  +G  P IV+ NA+++G  +
Sbjct: 1417 EMLE-KNVQPDEFVYATLIDGFIRSENLGDARKI-FEFMEHKGICPDIVSCNAMIKGYCQ 1474

Query: 364  LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
               + EA    + M  +G + D  TY  VI G  +   L+ A R+  D++      +   
Sbjct: 1475 FGMMSEAILCMSNMRKVGCIPDEFTYTTVISGYAKQGNLNGALRWLCDMIKRKCKPNVVT 1534

Query: 424  YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
            Y+++I G C++G    A      +    ++PN+V Y ++I    K      A      M 
Sbjct: 1535 YSSLINGYCKTGDTDFAEGLFANMQAEALSPNVVTYTILIGSLFKKDKVLRAGLYFETML 1594

Query: 484  KNGLNPDAVTWRIL 497
             N  +P+ VT   L
Sbjct: 1595 LNHCSPNDVTLHYL 1608



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 118/470 (25%), Positives = 202/470 (42%), Gaps = 70/470 (14%)

Query: 4    LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            LC    V +A     +   R   PN +SYT LIHG+C  GE+ VA  +  EM   G  P+
Sbjct: 1297 LCHEGHVRKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGELMVASDLLVEMMGRGHTPD 1356

Query: 64   SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             +T+  L+ G++    V  A ++  K+ ER +   D+++ N     L+  LC++  +   
Sbjct: 1357 VVTFGALIHGLVVAGKVSEALIVREKMTER-QVFPDVNIYNV----LISGLCKKRMLPAA 1411

Query: 124  FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
              I E+M +     +EF    +ID   RS     A ++   M  +G+ P +VS N+++ G
Sbjct: 1412 KNILEEMLEKNVQPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGICPDIVSCNAMIKG 1471

Query: 184  LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
             C+ G    A   +    + G +P E TY  ++ G   + +L  A               
Sbjct: 1472 YCQFGMMSEAILCMSNMRKVGCIPDEFTYTTVISGYAKQGNLNGA--------------- 1516

Query: 244  TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                   LR LC              M++ +C+P+V+T +++ING+CK G  + A  +  
Sbjct: 1517 -------LRWLC-------------DMIKRKCKPNVVTYSSLINGYCKTGDTDFAEGLFA 1556

Query: 304  DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            +M A    +P+ VT+T +I  L    ++  A  L ++ M     SP  VT + ++ GL  
Sbjct: 1557 NMQAEAL-SPNVVTYTILIGSLFKKDKVLRA-GLYFETMLLNHCSPNDVTLHYLVNGL-- 1612

Query: 364  LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLC----ESNQLDEAKRFWDDIVWPSNIH 419
                                  ++    VI+ +C    E +  D     +  +V+     
Sbjct: 1613 ----------------------TSCTPCVINSICCNTSEVHGKDALLVVFKKLVFDIGDP 1650

Query: 420  DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKL 469
             N  Y A+I  LCR   + EA+ F   +   G  PN + +  ++ G C +
Sbjct: 1651 RNSAYNAIIFSLCRHNMLREALDFKNRMAKKGYVPNPITFLSLLYGFCSV 1700



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 88/370 (23%), Positives = 149/370 (40%), Gaps = 60/370 (16%)

Query: 13   AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVR 72
            A  L  +M  RGH P+VV++  LIHG    G++  A  V ++M    V P+   Y+VL+ 
Sbjct: 1341 ASDLLVEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLIS 1400

Query: 73   GVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQ 132
            G+ + R +  A  ++ ++ E+  + ++       +A L+D   R   + +  +I E M  
Sbjct: 1401 GLCKKRMLPAAKNILEEMLEKNVQPDEF-----VYATLIDGFIRSENLGDARKIFEFMEH 1455

Query: 133  GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMR 192
                 +  +C  MI   C+ G    A   +  MRK G  P   +Y +++ G  K G    
Sbjct: 1456 KGICPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKVGCIPDEFTYTTVISGYAKQGNLNG 1515

Query: 193  AYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLR 252
            A + L + I+    P+  TY  L+ G C   D + A  +   M ++          I + 
Sbjct: 1516 ALRWLCDMIKRKCKPNVVTYSSLINGYCKTGDTDFAEGLFANMQAEALSPNVVTYTILIG 1575

Query: 253  ALCLIKNPTELLNVLVF--MLQTQCQPDVITLNTVINGF--------------------- 289
            +L   K    L   L F  ML   C P+ +TL+ ++NG                      
Sbjct: 1576 SL--FKKDKVLRAGLYFETMLLNHCSPNDVTLHYLVNGLTSCTPCVINSICCNTSEVHGK 1633

Query: 290  -----------------------------CKMGRIEEALKVLNDMVAGKFCAPDAVTFTT 320
                                         C+   + EAL   N M A K   P+ +TF +
Sbjct: 1634 DALLVVFKKLVFDIGDPRNSAYNAIIFSLCRHNMLREALDFKNRM-AKKGYVPNPITFLS 1692

Query: 321  IIFGLLNVGR 330
            +++G  +VG+
Sbjct: 1693 LLYGFCSVGK 1702



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 93/219 (42%), Gaps = 35/219 (15%)

Query: 19   DMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTR 78
            DM  R   PNVV+Y++LI+GYC+TG+ D A  +F  M+   + PN +TY++L+  + +  
Sbjct: 1522 DMIKRKCKPNVVTYSSLINGYCKTGDTDFAEGLFANMQAEALSPNVVTYTILIGSLFKKD 1581

Query: 79   DVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSL--CREGYVNEVFRIAEDMPQGKSV 136
             V RA +     +E M      S N+     LV+ L  C    +N +             
Sbjct: 1582 KVLRAGLY----FETMLLNH-CSPNDVTLHYLVNGLTSCTPCVINSI------------- 1623

Query: 137  NEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLT---PSLVSYNSIVHGLCKHGGCMRA 193
                         C +   HG   ++ V +K       P   +YN+I+  LC+H     A
Sbjct: 1624 ------------CCNTSEVHGKDALLVVFKKLVFDIGDPRNSAYNAIIFSLCRHNMLREA 1671

Query: 194  YQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVL 232
                    + GY+P+  T+  L+ G C        R +L
Sbjct: 1672 LDFKNRMAKKGYVPNPITFLSLLYGFCSVGKSVNWRTIL 1710



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 79/337 (23%), Positives = 138/337 (40%), Gaps = 57/337 (16%)

Query: 9    RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
            +V EA  +   M  R   P+V  Y  LI G C+   +  A  + +EM    V P+   Y+
Sbjct: 1372 KVSEALIVREKMTERQVFPDVNIYNVLISGLCKKRMLPAAKNILEEMLEKNVQPDEFVYA 1431

Query: 69   VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
             L+ G +R+ ++  A     K++E M E + +  +  +   ++   C+ G ++E      
Sbjct: 1432 TLIDGFIRSENLGDAR----KIFEFM-EHKGICPDIVSCNAMIKGYCQFGMMSEAILCMS 1486

Query: 129  DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
            +M +   + +EF    +I    + G  +GA R +  M KR   P++V+Y+S+++G CK G
Sbjct: 1487 NMRKVGCIPDEFTYTTVISGYAKQGNLNGALRWLCDMIKRKCKPNVVTYSSLINGYCKTG 1546

Query: 189  GC---------MRAYQL--------------------LEEGIQFGYL------PSEHTYK 213
                       M+A  L                    L  G+ F  +      P++ T  
Sbjct: 1547 DTDFAEGLFANMQAEALSPNVVTYTILIGSLFKKDKVLRAGLYFETMLLNHCSPNDVTLH 1606

Query: 214  VLVEGL------------CGESDLEKARKVLQFMLSKKDVD----RTRICNIYLRALCLI 257
             LV GL            C  S++   +  L  +  K   D    R    N  + +LC  
Sbjct: 1607 YLVNGLTSCTPCVINSICCNTSEVH-GKDALLVVFKKLVFDIGDPRNSAYNAIIFSLCRH 1665

Query: 258  KNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGR 294
                E L+    M +    P+ IT  +++ GFC +G+
Sbjct: 1666 NMLREALDFKNRMAKKGYVPNPITFLSLLYGFCSVGK 1702


>gi|357466003|ref|XP_003603286.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492334|gb|AES73537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1246

 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 134/534 (25%), Positives = 247/534 (46%), Gaps = 35/534 (6%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   ++ +A +L+  M++  H P+ V+Y TL+  + + G+++   + ++EM   G 
Sbjct: 312 IDALCAAGKLDKAKELYVKMRASSHSPDRVTYITLMDKFGKVGDLETVKRFWNEMEVDGY 371

Query: 61  LPNSLTYSVLVRGVLRTRDVERA-------------------NVLMFKL---------WE 92
            P+ +TY++L+  + ++ DV+RA                   N ++  L          E
Sbjct: 372 APDVVTYTILIEALCKSGDVDRAFDMLDVMTTKGIFPNLHTYNTMICGLLKARRLDEALE 431

Query: 93  RMKEEEDLSVNNAAFAN--LVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC 150
            ++  E L V   AF+    +D   + G   +     E M +   +    AC   + +L 
Sbjct: 432 LLENMESLGVKPTAFSYVLFIDYYGKSGDPAKAIDTFETMKKRGIMPSIAACNASLYTLA 491

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
            +GR   A  +   + K GL+P  V+YN ++    K G   +A QLL E I  G  P   
Sbjct: 492 ETGRISEAEDIFNDLHKCGLSPDSVTYNMLMKCYSKAGQIDKATQLLSEMISKGCEPDVM 551

Query: 211 TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM 270
               L+  L     ++ A K+   + + K        NI L  L       + L +   M
Sbjct: 552 IINSLINTLYKAGRVDAAWKMFGRLKNLKLAPTVVTYNILLTGLGKEGKILKALELFGSM 611

Query: 271 LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR 330
            ++ C P+ IT N++++   K   ++ ALK+   M     C PD +T+ TII+GL+  GR
Sbjct: 612 TESGCPPNTITFNSLLDCLSKNDAVDLALKMFCRMTMMN-CNPDVLTYNTIIYGLIREGR 670

Query: 331 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEA-KEVFNCMLGIGVVADSTTY 389
           I  A    +Q+  ++  SP  VT   ++ G+ R  RVE+A K V   +    +  +S  +
Sbjct: 671 IDYAFWFFHQM--KKFLSPDYVTLCTLIPGVVRHGRVEDAIKVVMEFVHQACLQTNSQFW 728

Query: 390 AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449
             +++ +    +++EA  F + +V  S   D++V   +IK LC+  K  +A +   +   
Sbjct: 729 GELMECILTEAEIEEAISFAEILVCNSVCQDDHVMLPLIKVLCKRKKALDAQNVFDKFTK 788

Query: 450 S-GVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
           + G+ P +  YN ++DG    +   +A ++  +M+  G +P+  T+ +L   HG
Sbjct: 789 NLGIHPTLESYNCLMDGLLGSNFTEKALELFEDMKSAGTHPNNFTYNLLLDAHG 842



 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 136/513 (26%), Positives = 234/513 (45%), Gaps = 11/513 (2%)

Query: 1    MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
            +D L     V  A K+F  M      P+V++Y T+I+G  R G +D A+  F +M+   +
Sbjct: 627  LDCLSKNDAVDLALKMFCRMTMMNCNPDVLTYNTIIYGLIREGRIDYAFWFFHQMKKF-L 685

Query: 61   LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             P+ +T   L+ GV+R   VE A     K+      +  L  N+  +  L++ +  E  +
Sbjct: 686  SPDYVTLCTLIPGVVRHGRVEDA----IKVVMEFVHQACLQTNSQFWGELMECILTEAEI 741

Query: 121  NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKR-GLTPSLVSYNS 179
             E    AE +       ++     +I  LC+  +   A  V     K  G+ P+L SYN 
Sbjct: 742  EEAISFAEILVCNSVCQDDHVMLPLIKVLCKRKKALDAQNVFDKFTKNLGIHPTLESYNC 801

Query: 180  IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
            ++ GL       +A +L E+    G  P+  TY +L++       + K   +   M S+ 
Sbjct: 802  LMDGLLGSNFTEKALELFEDMKSAGTHPNNFTYNLLLDAHGKSKRINKLYDLYSEMRSRG 861

Query: 240  DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                    NI + AL    N  + L++   ++     P   T   +I+G  K GR E+A+
Sbjct: 862  CEPNAITHNIIISALVKSNNLNKALDLYYELMSGDFSPTPCTYGPLIDGLLKAGRSEQAM 921

Query: 300  KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
            K+  +M+    C P++V +  +I G    G I  A  L ++ M + G  P + +Y  ++ 
Sbjct: 922  KIFEEMLDYG-CGPNSVIYNILINGFGKSGEIDFACEL-FKKMVKEGIRPDLKSYTILVE 979

Query: 360  GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
             L    R++EA + F  +   G+  D+ +Y  +I+GL +S +LDEA   + ++       
Sbjct: 980  CLCITGRIDEAVQYFEELKLTGLDPDTVSYNFIINGLGKSRRLDEALSLFSEMKNRGISP 1039

Query: 420  DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
            D Y Y A+I  L  +GK+  AV    EL   G+ P++  YN +I G      K +A+ + 
Sbjct: 1040 DLYTYNALILHLGIAGKVDVAVKMYEELQLVGLEPSVFTYNALIRGHSLSGNKDQAFSVF 1099

Query: 480  REMRKNGLNPDAVTWRILDKLHGNRG---NDFG 509
            ++M   G +P+  T+  L   +   G   N FG
Sbjct: 1100 KKMMVVGCSPNTETFAQLPNKYPRAGLVHNPFG 1132



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 128/525 (24%), Positives = 241/525 (45%), Gaps = 43/525 (8%)

Query: 9    RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
            ++ +A +L  +M S+G  P+V+   +LI+   + G +D A+K+F  +++  + P  +TY+
Sbjct: 530  QIDKATQLLSEMISKGCEPDVMIINSLINTLYKAGRVDAAWKMFGRLKNLKLAPTVVTYN 589

Query: 69   VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
            +L+ G+ +   + +A     +L+  M E      N   F +L+D L +   V+   ++  
Sbjct: 590  ILLTGLGKEGKILKA----LELFGSMTES-GCPPNTITFNSLLDCLSKNDAVDLALKMFC 644

Query: 129  DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
             M       +      +I  L R GR   A    + M+K  L+P  V+  +++ G+ +HG
Sbjct: 645  RMTMMNCNPDVLTYNTIIYGLIREGRIDYAFWFFHQMKKF-LSPDYVTLCTLIPGVVRHG 703

Query: 189  GCMRAYQLLEEGIQFGYLPSEHTY-KVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC 247
                A +++ E +    L +   +   L+E +  E+++E+A    + ++         + 
Sbjct: 704  RVEDAIKVVMEFVHQACLQTNSQFWGELMECILTEAEIEEAISFAEILVCNSVCQDDHVM 763

Query: 248  NIYLRALCLIKNPTELLNVL-VFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV 306
               ++ LC  K   +  NV   F       P + + N +++G       E+AL++  DM 
Sbjct: 764  LPLIKVLCKRKKALDAQNVFDKFTKNLGIHPTLESYNCLMDGLLGSNFTEKALELFEDMK 823

Query: 307  AG----------------------------------KFCAPDAVTFTTIIFGLLNVGRIQ 332
            +                                   + C P+A+T   II  L+    + 
Sbjct: 824  SAGTHPNNFTYNLLLDAHGKSKRINKLYDLYSEMRSRGCEPNAITHNIIISALVKSNNLN 883

Query: 333  EALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIV 392
            +AL+L Y++M    +SP   TY  ++ GL +  R E+A ++F  ML  G   +S  Y I+
Sbjct: 884  KALDLYYELM-SGDFSPTPCTYGPLIDGLLKAGRSEQAMKIFEEMLDYGCGPNSVIYNIL 942

Query: 393  IDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGV 452
            I+G  +S ++D A   +  +V      D   Y  +++ LC +G+I EAV +  EL  +G+
Sbjct: 943  INGFGKSGEIDFACELFKKMVKEGIRPDLKSYTILVECLCITGRIDEAVQYFEELKLTGL 1002

Query: 453  TPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
             P+ V YN +I+G  K     EA  +  EM+  G++PD  T+  L
Sbjct: 1003 DPDTVSYNFIINGLGKSRRLDEALSLFSEMKNRGISPDLYTYNAL 1047



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 121/482 (25%), Positives = 230/482 (47%), Gaps = 11/482 (2%)

Query: 4   LCGLSRVGEAHK---LFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +  L R G+  K   L  +MKS G  PN+ +YT  I    R   +D A+ +F EM   G 
Sbjct: 242 MVALGRRGDTRKIMNLLEEMKSIGLRPNIYTYTICIRALGRARRIDDAWGIFKEMDDEGC 301

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TY+VL+  +     +++A     +L+ +M+     S +   +  L+D   + G +
Sbjct: 302 GPDVITYTVLIDALCAAGKLDKAK----ELYVKMRASSH-SPDRVTYITLMDKFGKVGDL 356

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
             V R   +M       +      +I++LC+SG    A  ++ VM  +G+ P+L +YN++
Sbjct: 357 ETVKRFWNEMEVDGYAPDVVTYTILIEALCKSGDVDRAFDMLDVMTTKGIFPNLHTYNTM 416

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GL K      A +LLE     G  P+  +Y + ++      D  KA    + M  +  
Sbjct: 417 ICGLLKARRLDEALELLENMESLGVKPTAFSYVLFIDYYGKSGDPAKAIDTFETMKKRGI 476

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           +     CN  L  L      +E  ++   + +    PD +T N ++  + K G+I++A +
Sbjct: 477 MPSIAACNASLYTLAETGRISEAEDIFNDLHKCGLSPDSVTYNMLMKCYSKAGQIDKATQ 536

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +L++M++ K C PD +   ++I  L   GR+  A   ++  +     +P +VTYN +L G
Sbjct: 537 LLSEMIS-KGCEPDVMIINSLINTLYKAGRVDAAWK-MFGRLKNLKLAPTVVTYNILLTG 594

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L +  ++ +A E+F  M   G   ++ T+  ++D L +++ +D A + +  +   +   D
Sbjct: 595 LGKEGKILKALELFGSMTESGCPPNTITFNSLLDCLSKNDAVDLALKMFCRMTMMNCNPD 654

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              Y  +I GL R G+I  A  F +++    ++P+ V    +I G  +     +A +++ 
Sbjct: 655 VLTYNTIIYGLIREGRIDYAFWFFHQM-KKFLSPDYVTLCTLIPGVVRHGRVEDAIKVVM 713

Query: 481 EM 482
           E 
Sbjct: 714 EF 715



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 123/509 (24%), Positives = 239/509 (46%), Gaps = 15/509 (2%)

Query: 4    LCGLSRVGE---AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
            L GL + G+   A +LF  M   G  PN +++ +L+    +   +D+A K+F  M     
Sbjct: 592  LTGLGKEGKILKALELFGSMTESGCPPNTITFNSLLDCLSKNDAVDLALKMFCRMTMMNC 651

Query: 61   LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             P+ LTY+ ++ G++R   ++ A    F  + +MK+   LS +      L+  + R G V
Sbjct: 652  NPDVLTYNTIIYGLIREGRIDYA----FWFFHQMKKF--LSPDYVTLCTLIPGVVRHGRV 705

Query: 121  NEVFRIAEDMPQGK--SVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
             +  ++  +         N +F  G +++ +        A     ++    +        
Sbjct: 706  EDAIKVVMEFVHQACLQTNSQF-WGELMECILTEAEIEEAISFAEILVCNSVCQDDHVML 764

Query: 179  SIVHGLCKHGGCMRAYQLLEEGIQ-FGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
             ++  LCK    + A  + ++  +  G  P+  +Y  L++GL G +  EKA ++ + M S
Sbjct: 765  PLIKVLCKRKKALDAQNVFDKFTKNLGIHPTLESYNCLMDGLLGSNFTEKALELFEDMKS 824

Query: 238  KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
                      N+ L A    K   +L ++   M    C+P+ IT N +I+   K   + +
Sbjct: 825  AGTHPNNFTYNLLLDAHGKSKRINKLYDLYSEMRSRGCEPNAITHNIIISALVKSNNLNK 884

Query: 298  ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
            AL +  ++++G F +P   T+  +I GLL  GR ++A+ + ++ M   G  P  V YN +
Sbjct: 885  ALDLYYELMSGDF-SPTPCTYGPLIDGLLKAGRSEQAMKI-FEEMLDYGCGPNSVIYNIL 942

Query: 358  LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 417
            + G  +   ++ A E+F  M+  G+  D  +Y I+++ LC + ++DEA ++++++     
Sbjct: 943  INGFGKSGEIDFACELFKKMVKEGIRPDLKSYTILVECLCITGRIDEAVQYFEELKLTGL 1002

Query: 418  IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQ 477
              D   Y  +I GL +S ++ EA+    E+ + G++P++  YN +I           A +
Sbjct: 1003 DPDTVSYNFIINGLGKSRRLDEALSLFSEMKNRGISPDLYTYNALILHLGIAGKVDVAVK 1062

Query: 478  ILREMRKNGLNPDAVTWRILDKLHGNRGN 506
            +  E++  GL P   T+  L + H   GN
Sbjct: 1063 MYEELQLVGLEPSVFTYNALIRGHSLSGN 1091



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 126/508 (24%), Positives = 220/508 (43%), Gaps = 52/508 (10%)

Query: 10  VGEAHKLFFDMKSRGHVPNVVSYTTLIH----GYCRTGEMDVAYKVFDEMRHCGVLPNSL 65
           +G A      M   G + N  SY  LIH    G+C     + A KV+  M   G+ P+  
Sbjct: 182 IGRAPFALRKMTEVGFILNAYSYNGLIHLLLPGFC-----NEALKVYKRMISEGMKPSMK 236

Query: 66  TYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFR 125
           TYS L+  + R  D  +    +  L E MK    L  N   +   + +L R   +++ + 
Sbjct: 237 TYSALMVALGRRGDTRK----IMNLLEEMKSI-GLRPNIYTYTICIRALGRARRIDDAWG 291

Query: 126 IAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLC 185
           I ++M       +      +ID+LC +G+   A  +   MR    +P  V+Y +++    
Sbjct: 292 IFKEMDDEGCGPDVITYTVLIDALCAAGKLDKAKELYVKMRASSHSPDRVTYITLMDKFG 351

Query: 186 KHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTR 245
           K G      +   E    GY P   TY +L+E LC   D                VDR  
Sbjct: 352 KVGDLETVKRFWNEMEVDGYAPDVVTYTILIEALCKSGD----------------VDRA- 394

Query: 246 ICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM 305
                              ++L  M      P++ T NT+I G  K  R++EAL++L +M
Sbjct: 395 ------------------FDMLDVMTTKGIFPNLHTYNTMICGLLKARRLDEALELLENM 436

Query: 306 VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLR 365
            +     P A ++   I      G   +A++  ++ M +RG  P I   NA L  L    
Sbjct: 437 ESLG-VKPTAFSYVLFIDYYGKSGDPAKAIDT-FETMKKRGIMPSIAACNASLYTLAETG 494

Query: 366 RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYA 425
           R+ EA+++FN +   G+  DS TY +++    ++ Q+D+A +   +++      D  +  
Sbjct: 495 RISEAEDIFNDLHKCGLSPDSVTYNMLMKCYSKAGQIDKATQLLSEMISKGCEPDVMIIN 554

Query: 426 AMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN 485
           ++I  L ++G++  A      L +  + P +V YN+++ G  K     +A ++   M ++
Sbjct: 555 SLINTLYKAGRVDAAWKMFGRLKNLKLAPTVVTYNILLTGLGKEGKILKALELFGSMTES 614

Query: 486 GLNPDAVTWR-ILDKLHGNRGNDFGLRI 512
           G  P+ +T+  +LD L  N   D  L++
Sbjct: 615 GCPPNTITFNSLLDCLSKNDAVDLALKM 642



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 109/450 (24%), Positives = 193/450 (42%), Gaps = 48/450 (10%)

Query: 95  KEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGR 154
           +++   SV+      ++ S+         F+I   +     V+   AC +M++ L    R
Sbjct: 89  RKKNKTSVSEEEVMTILKSISDPNSAFSYFKIVSQLTN--FVHTTDACNYMLEILREQRR 146

Query: 155 NHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYK- 213
                 V  +M+K+ +  +L +Y +I   L   GG  RA   L +  + G++ + ++Y  
Sbjct: 147 IEDMVFVFDLMQKKVIYRNLTTYMTIFKALSIKGGIGRAPFALRKMTEVGFILNAYSYNG 206

Query: 214 ---VLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM 270
              +L+ G C E     A KV + M+S+      +  +  + AL    +  +++N+L  M
Sbjct: 207 LIHLLLPGFCNE-----ALKVYKRMISEGMKPSMKTYSALMVALGRRGDTRKIMNLLEEM 261

Query: 271 LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR 330
                +P++ T    I    +  RI++A  +  +M   + C PD +T+T +I  L   G+
Sbjct: 262 KSIGLRPNIYTYTICIRALGRARRIDDAWGIFKEM-DDEGCGPDVITYTVLIDALCAAGK 320

Query: 331 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYA 390
           + +A   LY  M    +SP  VTY  ++    ++  +E  K  +N M   G   D  TY 
Sbjct: 321 LDKAKE-LYVKMRASSHSPDRVTYITLMDKFGKVGDLETVKRFWNEMEVDGYAPDVVTYT 379

Query: 391 IVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 450
           I+I+ LC+S  +D A    D +       + + Y  MI GL ++ ++ EA+  L  +   
Sbjct: 380 ILIEALCKSGDVDRAFDMLDVMTTKGIFPNLHTYNTMICGLLKARRLDEALELLENMESL 439

Query: 451 GVTPNIVCYNVVID---------------------------GACKLSMK--------REA 475
           GV P    Y + ID                            AC  S+          EA
Sbjct: 440 GVKPTAFSYVLFIDYYGKSGDPAKAIDTFETMKKRGIMPSIAACNASLYTLAETGRISEA 499

Query: 476 YQILREMRKNGLNPDAVTWRILDKLHGNRG 505
             I  ++ K GL+PD+VT+ +L K +   G
Sbjct: 500 EDIFNDLHKCGLSPDSVTYNMLMKCYSKAG 529


>gi|357455187|ref|XP_003597874.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124359582|gb|ABD28711.2| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355486922|gb|AES68125.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 822

 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 138/553 (24%), Positives = 238/553 (43%), Gaps = 70/553 (12%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC + +V E  KL  D    G VPNVV Y  +I GYC+ G++  A +VF+E++  G LP 
Sbjct: 215 LCDVGKVEEGRKLIDDRWGNGCVPNVVFYNVIIDGYCKKGDLKRATRVFEELKLKGFLPT 274

Query: 64  SLTYSVLVRGVLRTRDVERANVL----------------------------------MFK 89
             TY  L+ G  +    +  + L                                  M +
Sbjct: 275 LETYGALIDGFCKAGKFQVVDQLLNEMNVMGLNVNVKVFNSIIDAKYKYGLVDKAAEMMR 334

Query: 90  LWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSL 149
           +   M  E D++  N     L++  C  G + E     E   +   +  +F+   ++ + 
Sbjct: 335 MMTEMGCEPDITTYNI----LINFSCSGGRIKEAEEFLERAKERTLLPNKFSYTPLMHAY 390

Query: 150 CRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSE 209
           C+ G    AS +++ + + G  P LVSY + +HG    G    A  + E+ ++ G  P  
Sbjct: 391 CKQGDYVMASDMLFKIAETGDKPDLVSYGAFIHGSVAGGEIDVALMVREKMMEKGVFPDA 450

Query: 210 HTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALC---LIKN-----PT 261
             Y VL+ GLC +     A+ +L  ML     D     + Y+ A      I+N      T
Sbjct: 451 QIYNVLMSGLCKKGRFPAAKLLLSEML-----DLNLQPDAYMYATLVDGFIRNNELDKAT 505

Query: 262 ELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTI 321
           EL  V+   +     P V+  N +I G CK G++ +A+  +N M      APD  T +T+
Sbjct: 506 ELFEVV---MSKGIDPGVVGYNVMIKGLCKCGKMTDAVSYVNKMKIANH-APDEYTHSTV 561

Query: 322 IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG 381
           I G +    +  AL +  Q+M Q+ Y P +V Y +++ G  ++  +  A++VF  M    
Sbjct: 562 IDGYVKQHDLDSALKMFGQMMKQK-YKPNVVAYTSLINGFCKIADMSRAEKVFRAMQSFN 620

Query: 382 VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAV 441
           +  +  TY I+I G  ++ + ++A  F++ ++  + + ++  +  +I GL         +
Sbjct: 621 LEPNVVTYTILIGGFSKTGKPEKAASFFELMLMNNCLPNDTTFHYLINGLTNITNTTLLI 680

Query: 442 H------------FLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNP 489
                        F   ++  G +  I  YN +I   CK  M   A  +  +M + G   
Sbjct: 681 EKNEENDRSLILDFFATMISEGWSQVIATYNSIIVCLCKHGMVDTAQLLQTKMLRKGFLM 740

Query: 490 DAVTWRILDKLHG 502
           D+V +  L  LHG
Sbjct: 741 DSVCFSAL--LHG 751



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 113/483 (23%), Positives = 227/483 (46%), Gaps = 25/483 (5%)

Query: 27  PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCG------VLPNSLTYSVLVRGVLRTRDV 80
           P VV+  +L++   + G++DVA +++D+M   G      ++ ++ +  ++V+G+     V
Sbjct: 162 PCVVANNSLLNCLVKNGKVDVACELYDKMLERGGDHGLDLVVDNYSIVIVVKGLCDVGKV 221

Query: 81  ERANVLMFKLWERMKEEEDLSVNNAAFAN-LVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
           E    L+   W       +  V N  F N ++D  C++G +    R+ E++     +   
Sbjct: 222 EEGRKLIDDRWG------NGCVPNVVFYNVIIDGYCKKGDLKRATRVFEELKLKGFLPTL 275

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
              G +ID  C++G+     +++  M   GL  ++  +NSI+    K+G   +A +++  
Sbjct: 276 ETYGALIDGFCKAGKFQVVDQLLNEMNVMGLNVNVKVFNSIIDAKYKYGLVDKAAEMMRM 335

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIY-----LRAL 254
             + G  P   TY +L+   C    +++A + L+     +  +RT + N +     + A 
Sbjct: 336 MTEMGCEPDITTYNILINFSCSGGRIKEAEEFLE-----RAKERTLLPNKFSYTPLMHAY 390

Query: 255 CLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPD 314
           C   +     ++L  + +T  +PD+++    I+G    G I+ AL V   M+  K   PD
Sbjct: 391 CKQGDYVMASDMLFKIAETGDKPDLVSYGAFIHGSVAGGEIDVALMVREKMME-KGVFPD 449

Query: 315 AVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVF 374
           A  +  ++ GL   GR   A  LL   M      P    Y  ++ G  R   +++A E+F
Sbjct: 450 AQIYNVLMSGLCKKGRFPAA-KLLLSEMLDLNLQPDAYMYATLVDGFIRNNELDKATELF 508

Query: 375 NCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRS 434
             ++  G+      Y ++I GLC+  ++ +A  + + +   ++  D Y ++ +I G  + 
Sbjct: 509 EVVMSKGIDPGVVGYNVMIKGLCKCGKMTDAVSYVNKMKIANHAPDEYTHSTVIDGYVKQ 568

Query: 435 GKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
             +  A+    +++     PN+V Y  +I+G CK++    A ++ R M+   L P+ VT+
Sbjct: 569 HDLDSALKMFGQMMKQKYKPNVVAYTSLINGFCKIADMSRAEKVFRAMQSFNLEPNVVTY 628

Query: 495 RIL 497
            IL
Sbjct: 629 TIL 631



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 110/459 (23%), Positives = 203/459 (44%), Gaps = 23/459 (5%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C   R+ EA +     K R  +PN  SYT L+H YC+ G+  +A  +  ++   G  P+ 
Sbjct: 356 CSGGRIKEAEEFLERAKERTLLPNKFSYTPLMHAYCKQGDYVMASDMLFKIAETGDKPDL 415

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEE---EDLSVNNAAFANLVDSLCREGYVN 121
           ++Y   + G +   +++ A  LM +  E+M E+    D  + N     L+  LC++G   
Sbjct: 416 VSYGAFIHGSVAGGEIDVA--LMVR--EKMMEKGVFPDAQIYNV----LMSGLCKKGRFP 467

Query: 122 EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
               +  +M       + +    ++D   R+     A+ +  V+  +G+ P +V YN ++
Sbjct: 468 AAKLLLSEMLDLNLQPDAYMYATLVDGFIRNNELDKATELFEVVMSKGIDPGVVGYNVMI 527

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
            GLCK G    A   + +     + P E+T+  +++G   + DL+ A K+   M+ +K  
Sbjct: 528 KGLCKCGKMTDAVSYVNKMKIANHAPDEYTHSTVIDGYVKQHDLDSALKMFGQMMKQKYK 587

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
                    +   C I + +    V   M     +P+V+T   +I GF K G+ E+A   
Sbjct: 588 PNVVAYTSLINGFCKIADMSRAEKVFRAMQSFNLEPNVVTYTILIGGFSKTGKPEKAASF 647

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRI----------QEALNL-LYQVMPQRGYSPG 350
              M+    C P+  TF  +I GL N+               +L L  +  M   G+S  
Sbjct: 648 FELMLMNN-CLPNDTTFHYLINGLTNITNTTLLIEKNEENDRSLILDFFATMISEGWSQV 706

Query: 351 IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD 410
           I TYN+++  L +   V+ A+ +   ML  G + DS  ++ ++ GLC++ +  E +    
Sbjct: 707 IATYNSIIVCLCKHGMVDTAQLLQTKMLRKGFLMDSVCFSALLHGLCQTGKSKEWRNIIS 766

Query: 411 DIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449
             +   +    + Y+  +      GK  EA + L  L++
Sbjct: 767 GDLTKIDFQTAFEYSLKLDKYLYDGKPSEASYILLNLIE 805



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 113/488 (23%), Positives = 204/488 (41%), Gaps = 84/488 (17%)

Query: 19  DMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFD---EMRHCGVLPNSLTYSVLVRGVL 75
           DMK+R   P + +  ++I  Y   G +D A K+F    E+ +C   P  +  + L+  ++
Sbjct: 118 DMKNRNFKPTLEALNSVICVYAEYGFVDKAVKMFYMVCELYNC--FPCVVANNSLLNCLV 175

Query: 76  RTRDVERANVLMFKLWERMKEEE-DLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGK 134
           +   V+ A  L  K+ ER  +   DL V+N +   +V  LC  G V E  ++ +D     
Sbjct: 176 KNGKVDVACELYDKMLERGGDHGLDLVVDNYSIVIVVKGLCDVGKVEEGRKLIDD----- 230

Query: 135 SVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAY 194
                           R G               G  P++V YN I+ G CK G   RA 
Sbjct: 231 ----------------RWGN--------------GCVPNVVFYNVIIDGYCKKGDLKRAT 260

Query: 195 QLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRA- 253
           ++ EE    G+LP+  TY  L++G C     +   ++L  M         ++ N  + A 
Sbjct: 261 RVFEELKLKGFLPTLETYGALIDGFCKAGKFQVVDQLLNEMNVMGLNVNVKVFNSIIDAK 320

Query: 254 --LCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC 311
               L+    E++ +   M +  C+PD+ T N +IN  C  GRI+EA + L +    +  
Sbjct: 321 YKYGLVDKAAEMMRM---MTEMGCEPDITTYNILINFSCSGGRIKEAEEFL-ERAKERTL 376

Query: 312 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK 371
            P+  ++T ++      G    A ++L+++  + G  P +V+Y A + G      ++ A 
Sbjct: 377 LPNKFSYTPLMHAYCKQGDYVMASDMLFKI-AETGDKPDLVSYGAFIHGSVAGGEIDVAL 435

Query: 372 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 431
            V   M+  GV  D+                                    +Y  ++ GL
Sbjct: 436 MVREKMMEKGVFPDAQ-----------------------------------IYNVLMSGL 460

Query: 432 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 491
           C+ G+   A   L E++D  + P+   Y  ++DG  + +   +A ++   +   G++P  
Sbjct: 461 CKKGRFPAAKLLLSEMLDLNLQPDAYMYATLVDGFIRNNELDKATELFEVVMSKGIDPGV 520

Query: 492 VTWRILDK 499
           V + ++ K
Sbjct: 521 VGYNVMIK 528



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 119/243 (48%), Gaps = 7/243 (2%)

Query: 261 TELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTT 320
           +E+  VL  M     +P +  LN+VI  + + G +++A+K+   +     C P  V   +
Sbjct: 110 SEIEIVLEDMKNRNFKPTLEALNSVICVYAEYGFVDKAVKMFYMVCELYNCFPCVVANNS 169

Query: 321 IIFGLLNVGRIQEALNLLYQVMPQRGYSPGI------VTYNAVLRGLFRLRRVEEAKEVF 374
           ++  L+  G++  A  L Y  M +RG   G+       +   V++GL  + +VEE +++ 
Sbjct: 170 LLNCLVKNGKVDVACEL-YDKMLERGGDHGLDLVVDNYSIVIVVKGLCDVGKVEEGRKLI 228

Query: 375 NCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRS 434
           +   G G V +   Y ++IDG C+   L  A R ++++     +     Y A+I G C++
Sbjct: 229 DDRWGNGCVPNVVFYNVIIDGYCKKGDLKRATRVFEELKLKGFLPTLETYGALIDGFCKA 288

Query: 435 GKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
           GK       L E+   G+  N+  +N +ID   K  +  +A +++R M + G  PD  T+
Sbjct: 289 GKFQVVDQLLNEMNVMGLNVNVKVFNSIIDAKYKYGLVDKAAEMMRMMTEMGCEPDITTY 348

Query: 495 RIL 497
            IL
Sbjct: 349 NIL 351


>gi|357499781|ref|XP_003620179.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495194|gb|AES76397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 517

 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 117/415 (28%), Positives = 208/415 (50%), Gaps = 17/415 (4%)

Query: 78  RDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVN 137
            DV+ A  L  +L +     ++ +  N  F  ++ SL +  + + V  +++ M       
Sbjct: 41  NDVDDAVSLFNRLLQ-----QNPTPPNIEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKP 95

Query: 138 EEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLC-------KH--- 187
               C  +I+S C+ G    A  V+  + K G  P+ ++ N+++ GLC       KH   
Sbjct: 96  NLVNCNILINSFCQLGHIPSAFSVLTKILKMGYKPNTITLNTLIKGLCLNGKIHDKHCIV 155

Query: 188 GGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC 247
           G    A  L  + I     P  +T+ +LV+G C E  +++A+ VL  M+ +         
Sbjct: 156 GKLKDAVDLFNKMILENINPDVYTFTILVDGFCKEGRVKEAKNVLAMMMIQGIKPGVVTY 215

Query: 248 NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA 307
           N  +    L+K   +  ++   M Q    PD+ + + +INGFCK+  ++EA+++L +M  
Sbjct: 216 NSLMDGYFLVKQVNKAKSIFNTMAQLGVSPDIQSYSILINGFCKIKMMDEAMELLKEM-H 274

Query: 308 GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRV 367
            K   P+ VT++++I GL   G+I  AL L+ + M  RG  P IVTY+++L  L +  +V
Sbjct: 275 HKQIIPNVVTYSSLIDGLCKSGKISYALKLVDE-MHDRGQPPNIVTYSSILDALCKNHQV 333

Query: 368 EEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAM 427
           + A  +   M   G+  +  TY I+I GLC+S +L++A++ ++D++   +  + Y Y  M
Sbjct: 334 DNAIALLTQMKNQGIQPNMYTYTILIKGLCQSGKLEDARKVFEDLLVKGHNLNVYTYTVM 393

Query: 428 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
           I+G C  G   EA+  L ++ D+G  PN   Y ++I    K      A ++L EM
Sbjct: 394 IQGFCDKGLFDEALTLLSKMEDNGCIPNAKTYEIIILSLFKKDENEMAEKLLCEM 448



 Score =  171 bits (433), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 91/263 (34%), Positives = 150/263 (57%), Gaps = 12/263 (4%)

Query: 247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK----------MGRIE 296
           CNI + + C + +     +VL  +L+   +P+ ITLNT+I G C           +G+++
Sbjct: 100 CNILINSFCQLGHIPSAFSVLTKILKMGYKPNTITLNTLIKGLCLNGKIHDKHCIVGKLK 159

Query: 297 EALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
           +A+ + N M+      PD  TFT ++ G    GR++EA N+L  +M Q G  PG+VTYN+
Sbjct: 160 DAVDLFNKMILENI-NPDVYTFTILVDGFCKEGRVKEAKNVLAMMMIQ-GIKPGVVTYNS 217

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416
           ++ G F +++V +AK +FN M  +GV  D  +Y+I+I+G C+   +DEA     ++    
Sbjct: 218 LMDGYFLVKQVNKAKSIFNTMAQLGVSPDIQSYSILINGFCKIKMMDEAMELLKEMHHKQ 277

Query: 417 NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAY 476
            I +   Y+++I GLC+SGKI  A+  + E+ D G  PNIV Y+ ++D  CK      A 
Sbjct: 278 IIPNVVTYSSLIDGLCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKNHQVDNAI 337

Query: 477 QILREMRKNGLNPDAVTWRILDK 499
            +L +M+  G+ P+  T+ IL K
Sbjct: 338 ALLTQMKNQGIQPNMYTYTILIK 360



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/341 (26%), Positives = 156/341 (45%), Gaps = 41/341 (12%)

Query: 2   DQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVL 61
           D+ C + ++ +A  LF  M      P+V ++T L+ G+C+ G +  A  V   M   G+ 
Sbjct: 150 DKHCIVGKLKDAVDLFNKMILENINPDVYTFTILVDGFCKEGRVKEAKNVLAMMMIQGIK 209

Query: 62  PNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVN 121
           P  +TY+ L+ G    + V +A  + F    ++    D+     +++ L++  C+   ++
Sbjct: 210 PGVVTYNSLMDGYFLVKQVNKAKSI-FNTMAQLGVSPDIQ----SYSILINGFCKIKMMD 264

Query: 122 EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
           E   + ++M   + +        +ID LC+SG+   A ++V  M  RG  P++V+Y+SI+
Sbjct: 265 EAMELLKEMHHKQIIPNVVTYSSLIDGLCKSGKISYALKLVDEMHDRGQPPNIVTYSSIL 324

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
             LCK+     A  LL +    G  P+ +TY +L++GLC    LE ARKV + +L K   
Sbjct: 325 DALCKNHQVDNAIALLTQMKNQGIQPNMYTYTILIKGLCQSGKLEDARKVFEDLLVK--- 381

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
                 N+Y                              T   +I GFC  G  +EAL +
Sbjct: 382 --GHNLNVY------------------------------TYTVMIQGFCDKGLFDEALTL 409

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVM 342
           L+ M     C P+A T+  II  L      + A  LL +++
Sbjct: 410 LSKM-EDNGCIPNAKTYEIIILSLFKKDENEMAEKLLCEMI 449



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 96/361 (26%), Positives = 168/361 (46%), Gaps = 9/361 (2%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M+ RG  PN+V+   LI+ +C+ G +  A+ V  ++   G  PN++T + L++G+     
Sbjct: 88  MEFRGIKPNLVNCNILINSFCQLGHIPSAFSVLTKILKMGYKPNTITLNTLIKGLCLNGK 147

Query: 80  VERANVLMFKLWERMKEEEDLSVNNA-----AFANLVDSLCREGYVNEVFRI-AEDMPQG 133
           +   + ++ KL + +     + + N       F  LVD  C+EG V E   + A  M QG
Sbjct: 148 IHDKHCIVGKLKDAVDLFNKMILENINPDVYTFTILVDGFCKEGRVKEAKNVLAMMMIQG 207

Query: 134 KSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRA 193
                      ++D      + + A  +   M + G++P + SY+ +++G CK      A
Sbjct: 208 IKPG-VVTYNSLMDGYFLVKQVNKAKSIFNTMAQLGVSPDIQSYSILINGFCKIKMMDEA 266

Query: 194 YQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRA 253
            +LL+E      +P+  TY  L++GLC    +  A K++  M  +         +  L A
Sbjct: 267 MELLKEMHHKQIIPNVVTYSSLIDGLCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDA 326

Query: 254 LCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAP 313
           LC        + +L  M     QP++ T   +I G C+ G++E+A KV  D++  K    
Sbjct: 327 LCKNHQVDNAIALLTQMKNQGIQPNMYTYTILIKGLCQSGKLEDARKVFEDLLV-KGHNL 385

Query: 314 DAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEV 373
           +  T+T +I G  + G   EAL LL + M   G  P   TY  ++  LF+    E A+++
Sbjct: 386 NVYTYTVMIQGFCDKGLFDEALTLLSK-MEDNGCIPNAKTYEIIILSLFKKDENEMAEKL 444

Query: 374 F 374
            
Sbjct: 445 L 445



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 121/248 (48%), Gaps = 5/248 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           MD    + +V +A  +F  M   G  P++ SY+ LI+G+C+   MD A ++  EM H  +
Sbjct: 219 MDGYFLVKQVNKAKSIFNTMAQLGVSPDIQSYSILINGFCKIKMMDEAMELLKEMHHKQI 278

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +PN +TYS L+ G+ ++  +  A  L+ ++ +R +       N   +++++D+LC+   V
Sbjct: 279 IPNVVTYSSLIDGLCKSGKISYALKLVDEMHDRGQPP-----NIVTYSSILDALCKNHQV 333

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +    +   M         +    +I  LC+SG+   A +V   +  +G   ++ +Y  +
Sbjct: 334 DNAIALLTQMKNQGIQPNMYTYTILIKGLCQSGKLEDARKVFEDLLVKGHNLNVYTYTVM 393

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G C  G    A  LL +    G +P+  TY++++  L  + + E A K+L  M+    
Sbjct: 394 IQGFCDKGLFDEALTLLSKMEDNGCIPNAKTYEIIILSLFKKDENEMAEKLLCEMIETNF 453

Query: 241 VDRTRICN 248
             R  + N
Sbjct: 454 DGRVALTN 461



 Score = 47.4 bits (111), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 23/101 (22%), Positives = 51/101 (50%)

Query: 399 SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVC 458
           +N +D+A   ++ ++  +    N  +  ++  L +S   H  ++   ++   G+ PN+V 
Sbjct: 40  NNDVDDAVSLFNRLLQQNPTPPNIEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVN 99

Query: 459 YNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
            N++I+  C+L     A+ +L ++ K G  P+ +T   L K
Sbjct: 100 CNILINSFCQLGHIPSAFSVLTKILKMGYKPNTITLNTLIK 140


>gi|297828900|ref|XP_002882332.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328172|gb|EFH58591.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 790

 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 134/536 (25%), Positives = 229/536 (42%), Gaps = 52/536 (9%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R+ EA  LF  MK     PNV +YT LI G CR   +  A  + DEM    ++P+
Sbjct: 268 LCEAGRIDEAVSLFVRMKDDCCYPNVYTYTALIKGLCRKN-VHKAMGLLDEMLERNLVPD 326

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY+ L+ G  R   ++ A    ++L   MKE   L  +   +   +D LC+   V E 
Sbjct: 327 LITYNSLIAGQCRAGHLDSA----YRLLSLMKER-GLVPDQRTYGCFIDFLCKSNRVEEA 381

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            R+ + + +            +ID  C+ G+   A  +   M  +  +P+  ++N+++HG
Sbjct: 382 RRLFDSLTEEGVSANVIMYSVLIDGYCKVGKVDEAGCLFEKMLSKNCSPNAYTFNALIHG 441

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LC  G    A  L ++ ++ G  P+ +T+ +L+  +  + D + A K LQ M+S  +   
Sbjct: 442 LCSAGNLKEALSLFDQMVKMGLKPTVYTFNILIGRMLKQGDFDDAHKCLQKMMSSGEKPV 501

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
            R  N ++   C      E  +++V M +    PD  T  ++I  + K+G    A  VL 
Sbjct: 502 ARTYNAFIEVYCSAGKVQEAEDMMVQMKEEGVPPDDFTYTSLIKAYGKLGLTYSAFDVLK 561

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGR-IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
            M     C P   TF ++I  L +    ++++     + +   G  PG          ++
Sbjct: 562 SMFDAD-CEPSHHTFLSLIKQLFDKRYVVEKSGETGVESVSNFGDVPG--------SNMW 612

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
           ++   +   E+F  M   G   DS  Y  +I G+C+   L  A +  D +          
Sbjct: 613 KMMEFDIVIELFEEMEKHGCTPDSKCYEKLISGICKVENLGIALKLLDQMQKEGISPSEM 672

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNI-------------------------- 456
           V+ A+I   C+  K  EA + + +++ SG +P +                          
Sbjct: 673 VFNAVISCCCKLQKYGEAANIVEDMICSGHSPQLEHCKTLICGLYEEGETERGNSVFKKL 732

Query: 457 ---------VCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL-DKLHG 502
                    + + ++IDG  K  +  E  Q+  EM KNG N    T+ IL  KLHG
Sbjct: 733 RGCGYNDDEIAWKILIDGMLKQGLVEEFSQLFEEMEKNGCNFSPRTYSILTQKLHG 788



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 101/402 (25%), Positives = 199/402 (49%), Gaps = 18/402 (4%)

Query: 104 NAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVY 163
           +A  A  V  +CR+   +++ +++      K  NE      ++  L R G     +++  
Sbjct: 133 SAPDALFVSDICRKMSKDDITKLSL-----KCYNE------LLTLLARFGLVDEMNQLYT 181

Query: 164 VMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGES 223
            M +  ++  + ++N +++  CK G    A Q + + IQ G  P   T    + G C   
Sbjct: 182 EMLEEFVSMDIYTFNLMINVYCKMGFVKEAKQFMCKMIQAGLSPDYFTSTSFILGYCRSK 241

Query: 224 DLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLN 283
           D++ A +V + M ++ +V   ++    +  LC      E +++ V M    C P+V T  
Sbjct: 242 DVDSAFRVFEEMPNRNEVSYNQL----IHGLCEAGRIDEAVSLFVRMKDDCCYPNVYTYT 297

Query: 284 TVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMP 343
            +I G C+   + +A+ +L++M+      PD +T+ ++I G    G +  A  LL  +M 
Sbjct: 298 ALIKGLCR-KNVHKAMGLLDEMLERNL-VPDLITYNSLIAGQCRAGHLDSAYRLL-SLMK 354

Query: 344 QRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLD 403
           +RG  P   TY   +  L +  RVEEA+ +F+ +   GV A+   Y+++IDG C+  ++D
Sbjct: 355 ERGLVPDQRTYGCFIDFLCKSNRVEEARRLFDSLTEEGVSANVIMYSVLIDGYCKVGKVD 414

Query: 404 EAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463
           EA   ++ ++  +   + Y + A+I GLC +G + EA+    ++V  G+ P +  +N++I
Sbjct: 415 EAGCLFEKMLSKNCSPNAYTFNALIHGLCSAGNLKEALSLFDQMVKMGLKPTVYTFNILI 474

Query: 464 DGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
               K     +A++ L++M  +G  P A T+    +++ + G
Sbjct: 475 GRMLKQGDFDDAHKCLQKMMSSGEKPVARTYNAFIEVYCSAG 516



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 96/421 (22%), Positives = 187/421 (44%), Gaps = 31/421 (7%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC  +RV EA +LF  +   G   NV+ Y+ LI GYC+ G++D A  +F++M     
Sbjct: 369 IDFLCKSNRVEEARRLFDSLTEEGVSANVIMYSVLIDGYCKVGKVDEAGCLFEKMLSKNC 428

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN+ T++ L+ G+    +++ A      L+++M  +  L      F  L+  + ++G  
Sbjct: 429 SPNAYTFNALIHGLCSAGNLKEA----LSLFDQMV-KMGLKPTVYTFNILIGRMLKQGDF 483

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           ++  +  + M               I+  C +G+   A  ++  M++ G+ P   +Y S+
Sbjct: 484 DDAHKCLQKMMSSGEKPVARTYNAFIEVYCSAGKVQEAEDMMVQMKEEGVPPDDFTYTSL 543

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGL---------CGESDLEKARKV 231
           +    K G    A+ +L+        PS HT+  L++ L          GE+ +E     
Sbjct: 544 IKAYGKLGLTYSAFDVLKSMFDADCEPSHHTFLSLIKQLFDKRYVVEKSGETGVESVSNF 603

Query: 232 LQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK 291
                   DV  + +  +    +        ++ +   M +  C PD      +I+G CK
Sbjct: 604 -------GDVPGSNMWKMMEFDI--------VIELFEEMEKHGCTPDSKCYEKLISGICK 648

Query: 292 MGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGI 351
           +  +  ALK+L+ M   +  +P  + F  +I     + +  EA N++ + M   G+SP +
Sbjct: 649 VENLGIALKLLDQM-QKEGISPSEMVFNAVISCCCKLQKYGEAANIV-EDMICSGHSPQL 706

Query: 352 VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDD 411
                ++ GL+     E    VF  + G G   D   + I+IDG+ +   ++E  + +++
Sbjct: 707 EHCKTLICGLYEEGETERGNSVFKKLRGCGYNDDEIAWKILIDGMLKQGLVEEFSQLFEE 766

Query: 412 I 412
           +
Sbjct: 767 M 767



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 78/179 (43%), Gaps = 5/179 (2%)

Query: 44  EMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVN 103
           E D+  ++F+EM   G  P+S  Y  L+ G+ +  ++  A     KL ++M ++E +S +
Sbjct: 616 EFDIVIELFEEMEKHGCTPDSKCYEKLISGICKVENLGIA----LKLLDQM-QKEGISPS 670

Query: 104 NAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVY 163
              F  ++   C+     E   I EDM       +   C  +I  L   G     + V  
Sbjct: 671 EMVFNAVISCCCKLQKYGEAANIVEDMICSGHSPQLEHCKTLICGLYEEGETERGNSVFK 730

Query: 164 VMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGE 222
            +R  G     +++  ++ G+ K G      QL EE  + G   S  TY +L + L G+
Sbjct: 731 KLRGCGYNDDEIAWKILIDGMLKQGLVEEFSQLFEEMEKNGCNFSPRTYSILTQKLHGK 789


>gi|222630089|gb|EEE62221.1| hypothetical protein OsJ_17008 [Oryza sativa Japonica Group]
          Length = 584

 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 133/500 (26%), Positives = 225/500 (45%), Gaps = 18/500 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D L   + VG    ++ +M+  G  PNV +Y  LI   C+   +D A K+ DEM   G 
Sbjct: 76  LDALLRENMVGAVVPVYDNMRKAGVDPNVYTYNLLIRALCQNDRVDAARKMLDEMSRKGC 135

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +++  +V G+ +   VE A   +          E + V  A++  +V +LC E  +
Sbjct: 136 HPDEVSHGTIVSGMCKLGRVEEARGFL---------AETVPV-QASYNAVVHALCGEFRM 185

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            EVF +  +M Q            ++D+ C++     A  ++  M   G TP+++++ ++
Sbjct: 186 WEVFSVVNEMVQRGLQPNVVTYTTIVDAFCKARELRMACAILARMVSMGCTPNVLTFTAL 245

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           V G  + G    A  +    +  G+ PS  +Y VL+ GLC   DL+ A   L F  S K 
Sbjct: 246 VKGFFEDGKVHDALSMWHWMVDEGWAPSTISYNVLIRGLCCIGDLKGA---LDFFNSMKR 302

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVF---MLQTQCQPDVITLNTVINGFCKMGRIEE 297
                    Y   +    N  +L   ++    M  + C+P+V+    +I+  CK    ++
Sbjct: 303 NALLPNATTYSTLVDGFSNAGDLDGAMLIWNEMKSSGCKPNVVVYTNMIDVLCKKMMFDQ 362

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           A  +++ M+    C P+ VTF T+I  L + GR+  ALN+ +  M + G  P   TYN +
Sbjct: 363 AESLIDKMLMDN-CPPNTVTFNTLIGRLCDCGRVGRALNVFHG-MRRNGCHPNDRTYNEL 420

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 417
           L GLFR    ++A  +   ML  G      TY  VI+ LC+      A      ++    
Sbjct: 421 LHGLFREGNHKDAFAMVIEMLNNGFELSLVTYNTVINCLCQMCMRKHAMLLLGRMMVQGI 480

Query: 418 IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQ 477
             D + + A+I   C+ GK+  A   L ++       N+V Y ++I   C       A  
Sbjct: 481 QPDAFTFNAIIHAYCKEGKVSIAACLLGQMNAVNCPRNVVAYTILISELCNQGKLSNAMV 540

Query: 478 ILREMRKNGLNPDAVTWRIL 497
            L +M   G+ P+  TW +L
Sbjct: 541 YLLKMLYEGICPNEATWNVL 560



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 99/393 (25%), Positives = 165/393 (41%), Gaps = 40/393 (10%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LCG  R+ E   +  +M  RG  PNVV+YTT++  +C+  E+ +A  +   M   G  PN
Sbjct: 179 LCGEFRMWEVFSVVNEMVQRGLQPNVVTYTTIVDAFCKARELRMACAILARMVSMGCTPN 238

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEE-------------------------- 97
            LT++ LV+G      V  A      +W  M +E                          
Sbjct: 239 VLTFTALVKGFFEDGKVHDA----LSMWHWMVDEGWAPSTISYNVLIRGLCCIGDLKGAL 294

Query: 98  --------EDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSL 149
                     L  N   ++ LVD     G ++    I  +M             +MID L
Sbjct: 295 DFFNSMKRNALLPNATTYSTLVDGFSNAGDLDGAMLIWNEMKSSGCKPNVVVYTNMIDVL 354

Query: 150 CRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSE 209
           C+      A  ++  M      P+ V++N+++  LC  G   RA  +     + G  P++
Sbjct: 355 CKKMMFDQAESLIDKMLMDNCPPNTVTFNTLIGRLCDCGRVGRALNVFHGMRRNGCHPND 414

Query: 210 HTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVF 269
            TY  L+ GL  E + + A  ++  ML+          N  +  LC +      + +L  
Sbjct: 415 RTYNELLHGLFREGNHKDAFAMVIEMLNNGFELSLVTYNTVINCLCQMCMRKHAMLLLGR 474

Query: 270 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG 329
           M+    QPD  T N +I+ +CK G++  A  +L  M A   C  + V +T +I  L N G
Sbjct: 475 MMVQGIQPDAFTFNAIIHAYCKEGKVSIAACLLGQMNAVN-CPRNVVAYTILISELCNQG 533

Query: 330 RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
           ++  A+  L +++ + G  P   T+N ++R +F
Sbjct: 534 KLSNAMVYLLKMLYE-GICPNEATWNVLVRAIF 565



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 121/237 (51%), Gaps = 7/237 (2%)

Query: 270 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG 329
           M +    P+V T N +I   C+  R++ A K+L++M + K C PD V+  TI+ G+  +G
Sbjct: 95  MRKAGVDPNVYTYNLLIRALCQNDRVDAARKMLDEM-SRKGCHPDEVSHGTIVSGMCKLG 153

Query: 330 RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTY 389
           R++EA   L + +P +       +YNAV+  L    R+ E   V N M+  G+  +  TY
Sbjct: 154 RVEEARGFLAETVPVQA------SYNAVVHALCGEFRMWEVFSVVNEMVQRGLQPNVVTY 207

Query: 390 AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449
             ++D  C++ +L  A      +V      +   + A++KG    GK+H+A+   + +VD
Sbjct: 208 TTIVDAFCKARELRMACAILARMVSMGCTPNVLTFTALVKGFFEDGKVHDALSMWHWMVD 267

Query: 450 SGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
            G  P+ + YNV+I G C +   + A      M++N L P+A T+  L     N G+
Sbjct: 268 EGWAPSTISYNVLIRGLCCIGDLKGALDFFNSMKRNALLPNATTYSTLVDGFSNAGD 324



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 86/354 (24%), Positives = 163/354 (46%), Gaps = 10/354 (2%)

Query: 146 IDSLCRSGRNHGASRVVYVMRKRGL-TPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
           I +  R+G    A +  Y     G   P +  YN ++  L +         + +   + G
Sbjct: 40  IGAFARAGSADRALKTFYRASDLGCRDPGVRVYNHLLDALLRENMVGAVVPVYDNMRKAG 99

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN-IYLRALCLIKNPTEL 263
             P+ +TY +L+  LC    ++ ARK+L  M S+K      + +   +  +C +    E 
Sbjct: 100 VDPNVYTYNLLIRALCQNDRVDAARKMLDEM-SRKGCHPDEVSHGTIVSGMCKLGRVEEA 158

Query: 264 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF 323
              L   +  Q      + N V++  C   R+ E   V+N+MV  +   P+ VT+TTI+ 
Sbjct: 159 RGFLAETVPVQA-----SYNAVVHALCGEFRMWEVFSVVNEMVQ-RGLQPNVVTYTTIVD 212

Query: 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 383
                  ++ A  +L + M   G +P ++T+ A+++G F   +V +A  +++ M+  G  
Sbjct: 213 AFCKARELRMACAILAR-MVSMGCTPNVLTFTALVKGFFEDGKVHDALSMWHWMVDEGWA 271

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
             + +Y ++I GLC    L  A  F++ +   + + +   Y+ ++ G   +G +  A+  
Sbjct: 272 PSTISYNVLIRGLCCIGDLKGALDFFNSMKRNALLPNATTYSTLVDGFSNAGDLDGAMLI 331

Query: 444 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
             E+  SG  PN+V Y  +ID  CK  M  +A  ++ +M  +   P+ VT+  L
Sbjct: 332 WNEMKSSGCKPNVVVYTNMIDVLCKKMMFDQAESLIDKMLMDNCPPNTVTFNTL 385



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 94/219 (42%), Gaps = 5/219 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC      +A  L   M      PN V++ TLI   C  G +  A  VF  MR  G 
Sbjct: 351 IDVLCKKMMFDQAESLIDKMLMDNCPPNTVTFNTLIGRLCDCGRVGRALNVFHGMRRNGC 410

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN  TY+ L+ G+ R  + + A  ++ ++     E   ++ N     N +  +C   + 
Sbjct: 411 HPNDRTYNELLHGLFREGNHKDAFAMVIEMLNNGFELSLVTYNTVI--NCLCQMCMRKHA 468

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
             +  +   M QG    + F    +I + C+ G+   A+ ++  M       ++V+Y  +
Sbjct: 469 --MLLLGRMMVQGIQ-PDAFTFNAIIHAYCKEGKVSIAACLLGQMNAVNCPRNVVAYTIL 525

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGL 219
           +  LC  G    A   L + +  G  P+E T+ VLV  +
Sbjct: 526 ISELCNQGKLSNAMVYLLKMLYEGICPNEATWNVLVRAI 564


>gi|116309556|emb|CAH66618.1| OSIGBa0144C23.4 [Oryza sativa Indica Group]
          Length = 845

 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 114/492 (23%), Positives = 237/492 (48%), Gaps = 9/492 (1%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
            V +AH LF +M  +G +P ++   ++I   C+  EMD A  +  +M   G+ P+  TYS
Sbjct: 225 EVDKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYS 284

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
           +++ G+ +++ +++A     ++ E+M E      N+  + +L+      G  NE  R+ +
Sbjct: 285 LIIDGLCKSKAMDKAE----RVLEQMVEA-GTRPNSITYNSLIHGYSISGMWNESVRVFK 339

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
            M     +     C   I +L + GR + A  +   M  +G  P ++SY++    +C   
Sbjct: 340 QMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTNASWVCYWY 399

Query: 189 GCM---RAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTR 245
             +     + +    +  G  P++H + +L+        ++KA  + + M +K  +  T 
Sbjct: 400 VTVVWVMWHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTV 459

Query: 246 ICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM 305
                + +LC I    + L+    M+     P       +I G C  G + +A +++++M
Sbjct: 460 TFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEM 519

Query: 306 VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLR 365
           +      P    F++II  L   GR+ E  +++  +M Q G  P +VT+N+++ G   + 
Sbjct: 520 MNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIM-DMMVQTGQRPNVVTFNSLMEGYCLVG 578

Query: 366 RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYA 425
            +EEA  + + M  IG+  +   Y  ++DG C++ ++D+A   + D++       + +Y+
Sbjct: 579 NMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYS 638

Query: 426 AMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN 485
            ++ GL ++ +   A    +E+++SG T +I  Y VV+ G C+ +   EA  +L ++   
Sbjct: 639 IILHGLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAM 698

Query: 486 GLNPDAVTWRIL 497
            +  D +T+ I+
Sbjct: 699 NVKFDIITFNIV 710



 Score =  168 bits (426), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 132/541 (24%), Positives = 231/541 (42%), Gaps = 40/541 (7%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    + +A ++   M   G  PN ++Y +LIHGY  +G  + + +VF +M  CGV
Sbjct: 287 IDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGV 346

Query: 61  LP-----NSLTYSVLVRGVLRTRDVE-----------RANVLMFK--------------- 89
           +P     NS  +++   G  RT + +           + +++ +                
Sbjct: 347 IPTVDNCNSFIHALFKHG--RTNEAKCIFDSMVLKGPKPDIISYSTNASWVCYWYVTVVW 404

Query: 90  -LWERMKE---EEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHM 145
            +W  +      + ++ N   F  L+++  R G +++   I EDM     + +      +
Sbjct: 405 VMWHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATV 464

Query: 146 IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY 205
           I SLCR GR   A      M   G+ PS   Y  ++ G C HG  ++A +L+ E +    
Sbjct: 465 ISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDI 524

Query: 206 LPSEHTY-KVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL 264
            P    Y   ++  LC E  + + + ++  M+           N  +   CL+ N  E  
Sbjct: 525 PPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAF 584

Query: 265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 324
            +L  M     +P+     T+++G+CK GRI++AL V  DM+  K   P +V ++ I+ G
Sbjct: 585 ALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLH-KGVKPTSVLYSIILHG 643

Query: 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 384
           L    R   A  + ++ M + G +  I TY  VL GL R    +EA  +   +  + V  
Sbjct: 644 LFQARRTTAAKKMFHE-MIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKF 702

Query: 385 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFL 444
           D  T+ IVI  + +  +  EAK  +D I     + +   Y+ MI  L +     EA +  
Sbjct: 703 DIITFNIVISAMFKVGRRQEAKELFDAISTYGLVPNIQTYSMMITNLIKEESYEEADNLF 762

Query: 445 YELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNR 504
             +  SG   +    N ++      +   +A   L  + +N L  +A T  +L  L    
Sbjct: 763 ISVEKSGHASDSRLLNHIVRMLLNKAEVAKASNYLSIIGENNLTLEASTISLLASLFSRE 822

Query: 505 G 505
           G
Sbjct: 823 G 823



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 119/519 (22%), Positives = 215/519 (41%), Gaps = 84/519 (16%)

Query: 23  RGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVER 82
           R   P + +Y  LI  Y R    D+   +   +   G+ P+  +YS L+ G ++  +V++
Sbjct: 170 RHSPPTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLGPDDFSYS-LIYGFVKDGEVDK 228

Query: 83  ANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFAC 142
           A+ L  ++ E                        +G + ++                  C
Sbjct: 229 AHCLFLEMME------------------------QGVLPKIL----------------IC 248

Query: 143 GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQ 202
             +I  LC+      A  +V  M   G+ P L +Y+ I+ GLCK     +A ++LE+ ++
Sbjct: 249 NSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVE 308

Query: 203 FGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRAL-------- 254
            G  P+  TY  L+ G        ++ +V + M S   +     CN ++ AL        
Sbjct: 309 AGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNE 368

Query: 255 --CL-----IKNPTELL-----------------------NVLVFMLQTQCQPDVITLNT 284
             C+     +K P   +                       N+   ML     P+    N 
Sbjct: 369 AKCIFDSMVLKGPKPDIISYSTNASWVCYWYVTVVWVMWHNIFNLMLTKGIAPNKHVFNI 428

Query: 285 VINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ 344
           +IN + + G +++A+ +  DM   K   PD VTF T+I  L  +GR+ +AL+  +  M  
Sbjct: 429 LINAYARCGMMDKAMLIFEDM-QNKGMIPDTVTFATVISSLCRIGRLDDALH-KFNHMVD 486

Query: 345 RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTY-AIVIDGLCESNQLD 403
            G  P    Y  +++G      + +AKE+ + M+   +      Y + +I+ LC+  ++ 
Sbjct: 487 IGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVA 546

Query: 404 EAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463
           E K   D +V      +   + ++++G C  G + EA   L  +   G+ PN   Y  ++
Sbjct: 547 EGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLV 606

Query: 464 DGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
           DG CK     +A  + R+M   G+ P +V + I+  LHG
Sbjct: 607 DGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSII--LHG 643



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/302 (19%), Positives = 130/302 (43%), Gaps = 5/302 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   RV E   +   M   G  PNVV++ +L+ GYC  G M+ A+ + D M   G+
Sbjct: 536 INNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGI 595

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN   Y  LV G  +   ++ A  +   +  +      +   +  ++ ++  L +    
Sbjct: 596 EPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHK-----GVKPTSVLYSIILHGLFQARRT 650

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
               ++  +M +  +       G ++  LCR+     A+ ++  +    +   ++++N +
Sbjct: 651 TAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIV 710

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +  + K G    A +L +    +G +P+  TY +++  L  E   E+A  +   +     
Sbjct: 711 ISAMFKVGRRQEAKELFDAISTYGLVPNIQTYSMMITNLIKEESYEEADNLFISVEKSGH 770

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
              +R+ N  +R L       +  N L  + +     +  T++ + + F + G+  E +K
Sbjct: 771 ASDSRLLNHIVRMLLNKAEVAKASNYLSIIGENNLTLEASTISLLASLFSREGKYREHIK 830

Query: 301 VL 302
           +L
Sbjct: 831 LL 832



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 92/193 (47%), Gaps = 2/193 (1%)

Query: 297 EALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
           E  K ++     +   P   T+  +I     V R    L ++ +++ + G  P   +Y +
Sbjct: 158 ELFKRMDRWACPRHSPPTIHTYNILIDCYRRVHRPDLGLAIVGRLL-KNGLGPDDFSY-S 215

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416
           ++ G  +   V++A  +F  M+  GV+        +I  LC+  ++D+A+     +V   
Sbjct: 216 LIYGFVKDGEVDKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSG 275

Query: 417 NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAY 476
              D + Y+ +I GLC+S  + +A   L ++V++G  PN + YN +I G     M  E+ 
Sbjct: 276 IAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESV 335

Query: 477 QILREMRKNGLNP 489
           ++ ++M   G+ P
Sbjct: 336 RVFKQMSSCGVIP 348


>gi|334183592|ref|NP_001185295.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75179660|sp|Q9LQ15.1|PPR95_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62914, mitochondrial; Flags: Precursor
 gi|8493579|gb|AAF75802.1|AC011000_5 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
           repeats. EST gb|AA728420 comes from this gene
           [Arabidopsis thaliana]
 gi|332195900|gb|AEE34021.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 528

 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 110/417 (26%), Positives = 205/417 (49%), Gaps = 42/417 (10%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M   G+ P++V+  +L++G+C    +  A  + D+M   G  P+++T++ L+ G+     
Sbjct: 139 MMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQMVEMGYKPDTVTFTTLIHGLFLHNK 198

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
              A  L+ ++ +R   + DL      +  +V+ LC+ G  +    +   M   K     
Sbjct: 199 ASEAVALIDRMVQR-GCQPDL----VTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANV 253

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
                +IDSLC+      A  +   M  +G+ P++++Y+S++  LC +G    A +LL +
Sbjct: 254 VIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSD 313

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
            I+    P+  T+  L++    +  L KA K+ + M+ K+ +D                 
Sbjct: 314 MIERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMI-KRSID----------------- 355

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
                            P++ T +++INGFC + R+ EA ++L  M+  K C P+ VT+ 
Sbjct: 356 -----------------PNIFTYSSLINGFCMLDRLGEAKQMLELMIR-KDCLPNVVTYN 397

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
           T+I G     R+ + + L ++ M QRG     VTY  ++ G F+ R  + A+ VF  M+ 
Sbjct: 398 TLINGFCKAKRVDKGMEL-FREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVS 456

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGK 436
           +GV  +  TY I++DGLC++ +L +A   ++ +   +   D Y Y  MI+G+C++GK
Sbjct: 457 VGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGK 513



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 117/461 (25%), Positives = 221/461 (47%), Gaps = 11/461 (2%)

Query: 41  RTG----EMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKE 96
           RTG    E+D A  +F  M      P+ + +S L+  + +    +    L+    E+M E
Sbjct: 51  RTGLSDIELDDAIGLFGVMAQSRPFPSIIEFSKLLSAIAKMNKFD----LVISFGEKM-E 105

Query: 97  EEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNH 156
              +S N   +  L++  CR   ++    +   M +     +      +++  C   R  
Sbjct: 106 ILGISHNLYTYNILINCFCRCSRLSLALALLGKMMKLGYEPDIVTLNSLLNGFCHGNRIS 165

Query: 157 GASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLV 216
            A  +V  M + G  P  V++ +++HGL  H     A  L++  +Q G  P   TY  +V
Sbjct: 166 DAVALVDQMVEMGYKPDTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVTYGAVV 225

Query: 217 EGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQ 276
            GLC   D + A  +L  M + K      I +  + +LC  ++  + LN+   M     +
Sbjct: 226 NGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVR 285

Query: 277 PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALN 336
           P+VIT +++I+  C  GR  +A ++L+DM+  K   P+ VTF+ +I   +  G++ +A  
Sbjct: 286 PNVITYSSLISCLCNYGRWSDASRLLSDMIERKI-NPNLVTFSALIDAFVKKGKLVKA-E 343

Query: 337 LLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 396
            LY+ M +R   P I TY++++ G   L R+ EAK++   M+    + +  TY  +I+G 
Sbjct: 344 KLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLELMIRKDCLPNVVTYNTLINGF 403

Query: 397 CESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNI 456
           C++ ++D+    + ++     + +   Y  +I G  ++     A     ++V  GV PNI
Sbjct: 404 CKAKRVDKGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNI 463

Query: 457 VCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           + YN+++DG CK     +A  +   ++++ + PD  T+ I+
Sbjct: 464 LTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIM 504



 Score =  161 bits (408), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 106/401 (26%), Positives = 193/401 (48%), Gaps = 42/401 (10%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C  +R+ +A  L   M   G+ P+ V++TTLIHG     +   A  + D M   G 
Sbjct: 155 LNGFCHGNRISDAVALVDQMVEMGYKPDTVTFTTLIHGLFLHNKASEAVALIDRMVQRGC 214

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TY  +V G+ +  D + A  L+ K+     E   +  N   ++ ++DSLC+  + 
Sbjct: 215 QPDLVTYGAVVNGLCKRGDTDLALNLLNKM-----EAAKIEANVVIYSTVIDSLCKYRHE 269

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           ++   +  +M              +I  LC  GR   ASR++  M +R + P+LV+++++
Sbjct: 270 DDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIERKINPNLVTFSAL 329

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +    K G  ++A +L EE I+    P+  TY  L+ G C    L +A+++L+ M+ K  
Sbjct: 330 IDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLELMIRK-- 387

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                             C P+V+T NT+INGFCK  R+++ ++
Sbjct: 388 ---------------------------------DCLPNVVTYNTLINGFCKAKRVDKGME 414

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +  +M + +    + VT+TT+I G         A  ++++ M   G  P I+TYN +L G
Sbjct: 415 LFREM-SQRGLVGNTVTYTTLIHGFFQARDCDNA-QMVFKQMVSVGVHPNILTYNILLDG 472

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ 401
           L +  ++ +A  VF  +    +  D  TY I+I+G+C++ +
Sbjct: 473 LCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGK 513


>gi|18397002|ref|NP_566237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207286|sp|Q9SR00.1|PP213_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g04760, chloroplastic; Flags: Precursor
 gi|6175176|gb|AAF04902.1|AC011437_17 hypothetical protein [Arabidopsis thaliana]
 gi|15810359|gb|AAL07067.1| unknown protein [Arabidopsis thaliana]
 gi|22136960|gb|AAM91709.1| unknown protein [Arabidopsis thaliana]
 gi|332640611|gb|AEE74132.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 602

 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 117/463 (25%), Positives = 217/463 (46%), Gaps = 8/463 (1%)

Query: 35  LIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERM 94
           + H  CR+G    +  + + M   G  P+ +  + L++G    R++ +A V + ++ E+ 
Sbjct: 95  IFHRSCRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKA-VRVMEILEKF 153

Query: 95  KEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGR 154
            + +       A+  L++  C+   +++  R+ + M       +      MI SLC  G+
Sbjct: 154 GQPDVF-----AYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGK 208

Query: 155 NHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKV 214
              A +V+  +      P++++Y  ++      GG   A +L++E +  G  P   TY  
Sbjct: 209 LDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNT 268

Query: 215 LVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQ 274
           ++ G+C E  +++A ++++ +  K         NI LRAL       E   ++  M   +
Sbjct: 269 IIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEK 328

Query: 275 CQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEA 334
           C P+V+T + +I   C+ G+IEEA+ +L  ++  K   PDA ++  +I      GR+  A
Sbjct: 329 CDPNVVTYSILITTLCRDGKIEEAMNLLK-LMKEKGLTPDAYSYDPLIAAFCREGRLDVA 387

Query: 335 LNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVID 394
           +  L + M   G  P IV YN VL  L +  + ++A E+F  +  +G   +S++Y  +  
Sbjct: 388 IEFL-ETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFS 446

Query: 395 GLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTP 454
            L  S     A     +++      D   Y +MI  LCR G + EA   L ++      P
Sbjct: 447 ALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHP 506

Query: 455 NIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           ++V YN+V+ G CK     +A  +L  M  NG  P+  T+ +L
Sbjct: 507 SVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVL 549



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 101/413 (24%), Positives = 196/413 (47%), Gaps = 7/413 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C ++R+ +A ++   M+S+   P+ V+Y  +I   C  G++D+A KV +++     
Sbjct: 165 INGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNC 224

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P  +TY++L+   +    V+ A  LM ++  R      L  +   +  ++  +C+EG V
Sbjct: 225 QPTVITYTILIEATMLEGGVDEALKLMDEMLSR-----GLKPDMFTYNTIIRGMCKEGMV 279

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +  F +  ++       +  +   ++ +L   G+     +++  M      P++V+Y+ +
Sbjct: 280 DRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSIL 339

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +  LC+ G    A  LL+   + G  P  ++Y  L+   C E  L+ A + L+ M+S   
Sbjct: 340 ITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGC 399

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           +      N  L  LC      + L +   + +  C P+  + NT+ +     G    AL 
Sbjct: 400 LPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALH 459

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           ++ +M++     PD +T+ ++I  L   G + EA  LL   M    + P +VTYN VL G
Sbjct: 460 MILEMMSNGI-DPDEITYNSMISCLCREGMVDEAFELLVD-MRSCEFHPSVVTYNIVLLG 517

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413
             +  R+E+A  V   M+G G   + TTY ++I+G+  +    EA    +D+V
Sbjct: 518 FCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLV 570



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 133/288 (46%), Gaps = 37/288 (12%)

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQC---------------------------- 275
           T++  I+ R+ C   N  E L++L  M++                               
Sbjct: 90  TQMLKIFHRS-CRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVME 148

Query: 276 ------QPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG 329
                 QPDV   N +INGFCKM RI++A +VL+ M +  F +PD VT+  +I  L + G
Sbjct: 149 ILEKFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDF-SPDTVTYNIMIGSLCSRG 207

Query: 330 RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTY 389
           ++  AL +L Q++      P ++TY  ++        V+EA ++ + ML  G+  D  TY
Sbjct: 208 KLDLALKVLNQLLSD-NCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTY 266

Query: 390 AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449
             +I G+C+   +D A     ++       D   Y  +++ L   GK  E    + ++  
Sbjct: 267 NTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFS 326

Query: 450 SGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
               PN+V Y+++I   C+     EA  +L+ M++ GL PDA ++  L
Sbjct: 327 EKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPL 374



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 111/216 (51%), Gaps = 3/216 (1%)

Query: 290 CKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSP 349
           C+ G   E+L +L  MV   +  PD +  T +I G   +  I +A+ ++ +++ + G  P
Sbjct: 100 CRSGNYIESLHLLETMVRKGY-NPDVILCTKLIKGFFTLRNIPKAVRVM-EILEKFG-QP 156

Query: 350 GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFW 409
            +  YNA++ G  ++ R+++A  V + M       D+ TY I+I  LC   +LD A +  
Sbjct: 157 DVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVL 216

Query: 410 DDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKL 469
           + ++  +       Y  +I+     G + EA+  + E++  G+ P++  YN +I G CK 
Sbjct: 217 NQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKE 276

Query: 470 SMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
            M   A++++R +   G  PD +++ IL +   N+G
Sbjct: 277 GMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQG 312


>gi|357138611|ref|XP_003570884.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17140-like [Brachypodium distachyon]
          Length = 864

 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 143/532 (26%), Positives = 239/532 (44%), Gaps = 77/532 (14%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ L    R+  A ++F  M +R    N  S   L  GYCR G    A  V D M     
Sbjct: 150 LEALSAAGRMDLARRVFDAMPAR----NEFSSGILARGYCRAGRSADALAVLDAMPEM-- 203

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             N +  + +V G  R   V+ A     +L +RM+ +  L+ N   F   + +LC+ G V
Sbjct: 204 --NLVVCNTVVAGFCREGRVDEAE----RLVDRMRAQ-GLAPNVVTFNGRISALCKAGRV 256

Query: 121 NEVFRIAEDM----PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVS 176
            E +RI  DM     QG    ++     M+   C +G    A+ +V +MR  G    + S
Sbjct: 257 LEAYRIFNDMQEAWEQGLPRPDQVTFDVMLSGFCDAGMVDEATVLVDIMRCGGFLRKVES 316

Query: 177 YNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFML 236
           YN  + GL K+G    A +LL E    G  P+ +TY ++V+GLC E      R+V  F+ 
Sbjct: 317 YNRWLSGLVKNGRVGEAQELLSEMAHEGVQPNSYTYNIIVDGLCKEGKAFDVRRVEDFVR 376

Query: 237 SKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIE 296
           S                            V+         PDV+T  ++++ +C  G   
Sbjct: 377 S---------------------------GVMT--------PDVVTYTSLLHAYCSKGNTT 401

Query: 297 EALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
            A ++L++M A K CAP+  T+  ++  LL  GR  E   LL + M ++GYS    + N 
Sbjct: 402 AANRILDEM-AQKGCAPNLFTYNVLLQSLLKAGRTTEVERLL-ERMSEKGYSLDTASCNI 459

Query: 357 VLRGLFRLRRVEEAKEVFNCM----------LG---IGVVADST----------TYAIVI 393
           ++ GL R  ++E A ++ + M          LG   + +V+DS+          TY+ ++
Sbjct: 460 IIDGLCRNSKLEMAMDIVDGMWNEGRLALRRLGNSFVSLVSDSSISKSCLPDRITYSTLM 519

Query: 394 DGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVT 453
           + LC+  + DEAK+   +++      D+ +Y   I G C  GK   A+  L ++      
Sbjct: 520 NALCKEGRFDEAKKKLVEMIGKDISPDSVIYDTFIHGYCMHGKTSLAIKVLRDMEKRSCN 579

Query: 454 PNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
           P+   YN++I G  +     E  +++ EM++ G++ + +T+  L K    RG
Sbjct: 580 PSTRSYNLLIWGFQEKQKSDEILKLMSEMKEKGISSNVMTYNSLIKSFCGRG 631



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 125/521 (23%), Positives = 236/521 (45%), Gaps = 35/521 (6%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHV----PNVVSYTTLIHGYCRTGEMDVAYKVFDEMR 56
           +  LC   RV EA+++F DM+         P+ V++  ++ G+C  G +D A  + D MR
Sbjct: 247 ISALCKAGRVLEAYRIFNDMQEAWEQGLPRPDQVTFDVMLSGFCDAGMVDEATVLVDIMR 306

Query: 57  HCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCR 116
             G L    +Y+  + G+++   V  A  L+ ++       E +  N+  +  +VD LC+
Sbjct: 307 CGGFLRKVESYNRWLSGLVKNGRVGEAQELLSEM-----AHEGVQPNSYTYNIIVDGLCK 361

Query: 117 EGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVS 176
           EG   +V R+ + +  G    +      ++ + C  G    A+R++  M ++G  P+L +
Sbjct: 362 EGKAFDVRRVEDFVRSGVMTPDVVTYTSLLHAYCSKGNTTAANRILDEMAQKGCAPNLFT 421

Query: 177 YNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFML 236
           YN ++  L K G      +LLE   + GY     +  ++++GLC  S LE A  ++  M 
Sbjct: 422 YNVLLQSLLKAGRTTEVERLLERMSEKGYSLDTASCNIIIDGLCRNSKLEMAMDIVDGMW 481

Query: 237 SKKDVDRTRICNIY-----------------------LRALCLIKNPTELLNVLVFMLQT 273
           ++  +   R+ N +                       + ALC      E    LV M+  
Sbjct: 482 NEGRLALRRLGNSFVSLVSDSSISKSCLPDRITYSTLMNALCKEGRFDEAKKKLVEMIGK 541

Query: 274 QCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQE 333
              PD +  +T I+G+C  G+   A+KVL DM   + C P   ++  +I+G     +  E
Sbjct: 542 DISPDSVIYDTFIHGYCMHGKTSLAIKVLRDM-EKRSCNPSTRSYNLLIWGFQEKQKSDE 600

Query: 334 ALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVI 393
            L L+ + M ++G S  ++TYN++++       V +A  + + ML   +V + T++ ++I
Sbjct: 601 ILKLMSE-MKEKGISSNVMTYNSLIKSFCGRGMVNKAMPLLDEMLQNEIVPNVTSFGLLI 659

Query: 394 DGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVT 453
              C++     A+R + D+   +      +Y  M   L    +  EA + L   ++  ++
Sbjct: 660 KAFCKTADFSAAQRVF-DVALSTCGQKEVLYCLMCTELSTYARWIEAKNILETALEMRIS 718

Query: 454 PNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
                Y  +I G C +S    A+ +L+     G + D  T+
Sbjct: 719 IQSFPYKRIIAGLCDVSEADHAHSLLKLFIAKGYSFDPATF 759



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 113/446 (25%), Positives = 197/446 (44%), Gaps = 37/446 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   +  +  ++   ++S    P+VV+YT+L+H YC  G    A ++ DEM   G 
Sbjct: 356 VDGLCKEGKAFDVRRVEDFVRSGVMTPDVVTYTSLLHAYCSKGNTTAANRILDEMAQKGC 415

Query: 61  LPNSLTYSVLVRGVL---RTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCR- 116
            PN  TY+VL++ +L   RT +VER       L ERM  E+  S++ A+   ++D LCR 
Sbjct: 416 APNLFTYNVLLQSLLKAGRTTEVER-------LLERMS-EKGYSLDTASCNIIIDGLCRN 467

Query: 117 ---------------EGYV------NEVFRIAEDMPQGKS-VNEEFACGHMIDSLCRSGR 154
                          EG +      N    +  D    KS + +      ++++LC+ GR
Sbjct: 468 SKLEMAMDIVDGMWNEGRLALRRLGNSFVSLVSDSSISKSCLPDRITYSTLMNALCKEGR 527

Query: 155 NHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKV 214
              A + +  M  + ++P  V Y++ +HG C HG    A ++L +  +    PS  +Y +
Sbjct: 528 FDEAKKKLVEMIGKDISPDSVIYDTFIHGYCMHGKTSLAIKVLRDMEKRSCNPSTRSYNL 587

Query: 215 LVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQ 274
           L+ G   +   ++  K++  M  K         N  +++ C      + + +L  MLQ +
Sbjct: 588 LIWGFQEKQKSDEILKLMSEMKEKGISSNVMTYNSLIKSFCGRGMVNKAMPLLDEMLQNE 647

Query: 275 CQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEA 334
             P+V +   +I  FCK      A +V +  VA   C    V +  +   L    R  EA
Sbjct: 648 IVPNVTSFGLLIKAFCKTADFSAAQRVFD--VALSTCGQKEVLYCLMCTELSTYARWIEA 705

Query: 335 LNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVID 394
            N+L   +  R  S     Y  ++ GL  +   + A  +    +  G   D  T+  VID
Sbjct: 706 KNILETALEMR-ISIQSFPYKRIIAGLCDVSEADHAHSLLKLFIAKGYSFDPATFMPVID 764

Query: 395 GLCESNQLDEAKRFWDDIVWPSNIHD 420
            L ES +  +A    + ++  ++ +D
Sbjct: 765 ALSESGKKHDADMLSEKMMEIADCND 790



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 110/223 (49%), Gaps = 10/223 (4%)

Query: 288 GFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGY 347
           G+C+ GR  +AL VL+ M          V   T++ G    GR+ EA  L+ ++  Q G 
Sbjct: 183 GYCRAGRSADALAVLDAMPEMNL-----VVCNTVVAGFCREGRVDEAERLVDRMRAQ-GL 236

Query: 348 SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI---GVV-ADSTTYAIVIDGLCESNQLD 403
           +P +VT+N  +  L +  RV EA  +FN M      G+   D  T+ +++ G C++  +D
Sbjct: 237 APNVVTFNGRISALCKAGRVLEAYRIFNDMQEAWEQGLPRPDQVTFDVMLSGFCDAGMVD 296

Query: 404 EAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463
           EA    D +     +     Y   + GL ++G++ EA   L E+   GV PN   YN+++
Sbjct: 297 EATVLVDIMRCGGFLRKVESYNRWLSGLVKNGRVGEAQELLSEMAHEGVQPNSYTYNIIV 356

Query: 464 DGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           DG CK     +  ++   +R   + PD VT+  L   + ++GN
Sbjct: 357 DGLCKEGKAFDVRRVEDFVRSGVMTPDVVTYTSLLHAYCSKGN 399


>gi|302763351|ref|XP_002965097.1| hypothetical protein SELMODRAFT_82937 [Selaginella moellendorffii]
 gi|300167330|gb|EFJ33935.1| hypothetical protein SELMODRAFT_82937 [Selaginella moellendorffii]
          Length = 540

 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 131/501 (26%), Positives = 239/501 (47%), Gaps = 19/501 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +  LC    V +A   F  +  R  + +VVSYTTLI G   +G +DVA ++F+EM   G 
Sbjct: 46  LKALCERKEVDQALSYFHSVSPRSDL-DVVSYTTLIMGLADSGRIDVACELFEEMSSSGS 104

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERM---KEEEDLSVNNAAFANLVDSLCRE 117
               + Y+ ++  + +    ++A       +ERM   K + DL      F  ++  LC+ 
Sbjct: 105 -QCVVAYTAIINALFKAHRPDQA----IACFERMVARKCDPDLRT----FTVVITGLCKA 155

Query: 118 GYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
           G +N    + ++M +     +      ++D L ++     A +++  +  RG+ P+ V+Y
Sbjct: 156 GKLNRACEVFQEMNRKGWKPDIIVYTSLVDGLSKASMMDEARKLLQEIVSRGMKPTEVTY 215

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
            S + GLCK+G    A +L+ E    G + +      +  G   E  +E+A  +   M+ 
Sbjct: 216 TSFISGLCKNGRVEEAGKLVRE---MGKMCAAEVLHCIFGGYVLEGKIEEALTLKDEMVK 272

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
           K      R     +  L  ++   E   +   M++  C PD  T   +++ FCK G+++ 
Sbjct: 273 KGVTLDVRCYTNLIHGLFYVRRNDEAQEMFEAMVRQGCVPDTRTYGMIVSHFCKQGKMQA 332

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           A KV+  M A    A +   + +++ G L V R +EA+N+ Y  M ++   P IVTYN +
Sbjct: 333 ACKVVEIMDAAGLEA-NCHVYNSLMDGFLGVNRAREAINV-YSTMLRKMVKPSIVTYNIL 390

Query: 358 LRGLFRLRRVEEAKEVFNCMLG-IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416
           + GL +L +  +A+ V   M    G+V    +Y  +I GL ++ + DEA   + ++V   
Sbjct: 391 MLGLCKLGQTADARLVLREMRERDGIVPTIVSYRTLIHGLGKAGRADEAIDVFTEMVDNG 450

Query: 417 NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAY 476
            + D     ++I+ L  + ++ EA   L ++   G+TP+ + YN ++   C  +    A+
Sbjct: 451 VVPDCPSCTSLIQALAMADRMDEATQLLRDMPRMGITPDALAYNALVKVLCGGAKVGPAW 510

Query: 477 QILREMRKNGLNPDAVTWRIL 497
            +L EM  N   PD  T+R +
Sbjct: 511 DVLVEMMDNSCVPDGSTFRAM 531



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 132/509 (25%), Positives = 228/509 (44%), Gaps = 48/509 (9%)

Query: 28  NVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLM 87
           +V SY  +I G C  G    AY++  EM   G+  + +T+ ++++ +   ++V++A    
Sbjct: 3   DVASYNIVIRGLCLAGRFSRAYELLKEMEALGIKKSQVTHGIILKALCERKEVDQA---- 58

Query: 88  FKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMID 147
              +  +    DL V   ++  L+  L   G ++    + E+M    S     A   +I+
Sbjct: 59  LSYFHSVSPRSDLDV--VSYTTLIMGLADSGRIDVACELFEEMSSSGS-QCVVAYTAIIN 115

Query: 148 SLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLP 207
           +L ++ R   A      M  R   P L ++  ++ GLCK G   RA ++ +E  + G+ P
Sbjct: 116 ALFKAHRPDQAIACFERMVARKCDPDLRTFTVVITGLCKAGKLNRACEVFQEMNRKGWKP 175

Query: 208 SEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNP-TELLNV 266
               Y  LV+GL   S +++ARK+LQ ++S+           ++  LC  KN   E    
Sbjct: 176 DIIVYTSLVDGLSKASMMDEARKLLQEIVSRGMKPTEVTYTSFISGLC--KNGRVEEAGK 233

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA---------------GKF- 310
           LV  +   C  +V  L+ +  G+   G+IEEAL + ++MV                G F 
Sbjct: 234 LVREMGKMCAAEV--LHCIFGGYVLEGKIEEALTLKDEMVKKGVTLDVRCYTNLIHGLFY 291

Query: 311 ------------------CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIV 352
                             C PD  T+  I+      G++Q A  ++ ++M   G      
Sbjct: 292 VRRNDEAQEMFEAMVRQGCVPDTRTYGMIVSHFCKQGKMQAACKVV-EIMDAAGLEANCH 350

Query: 353 TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI 412
            YN+++ G   + R  EA  V++ ML   V     TY I++ GLC+  Q  +A+    ++
Sbjct: 351 VYNSLMDGFLGVNRAREAINVYSTMLRKMVKPSIVTYNILMLGLCKLGQTADARLVLREM 410

Query: 413 VWPSNIHDNYV-YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSM 471
                I    V Y  +I GL ++G+  EA+    E+VD+GV P+      +I        
Sbjct: 411 RERDGIVPTIVSYRTLIHGLGKAGRADEAIDVFTEMVDNGVVPDCPSCTSLIQALAMADR 470

Query: 472 KREAYQILREMRKNGLNPDAVTWRILDKL 500
             EA Q+LR+M + G+ PDA+ +  L K+
Sbjct: 471 MDEATQLLRDMPRMGITPDALAYNALVKV 499



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 123/282 (43%), Gaps = 6/282 (2%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           ++ EA  L  +M  +G   +V  YT LIHG       D A ++F+ M   G +P++ TY 
Sbjct: 259 KIEEALTLKDEMVKKGVTLDVRCYTNLIHGLFYVRRNDEAQEMFEAMVRQGCVPDTRTYG 318

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
           ++V    +   ++ A     K+ E M +   L  N   + +L+D         E   +  
Sbjct: 319 MIVSHFCKQGKMQAA----CKVVEIM-DAAGLEANCHVYNSLMDGFLGVNRAREAINVYS 373

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKR-GLTPSLVSYNSIVHGLCKH 187
            M +            ++  LC+ G+   A  V+  MR+R G+ P++VSY +++HGL K 
Sbjct: 374 TMLRKMVKPSIVTYNILMLGLCKLGQTADARLVLREMRERDGIVPTIVSYRTLIHGLGKA 433

Query: 188 GGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC 247
           G    A  +  E +  G +P   +   L++ L     +++A ++L+ M            
Sbjct: 434 GRADEAIDVFTEMVDNGVVPDCPSCTSLIQALAMADRMDEATQLLRDMPRMGITPDALAY 493

Query: 248 NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGF 289
           N  ++ LC         +VLV M+   C PD  T   +  GF
Sbjct: 494 NALVKVLCGGAKVGPAWDVLVEMMDNSCVPDGSTFRAMKLGF 535


>gi|449455469|ref|XP_004145475.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Cucumis sativus]
          Length = 728

 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 127/488 (26%), Positives = 217/488 (44%), Gaps = 43/488 (8%)

Query: 7   LSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLT 66
           + ++ EA  +  DM+++G V        +I        ++ A  VFDEM   GV P+S T
Sbjct: 187 IGKLKEAVDMILDMRNQGLVLTTRVMNRIILVAAEMRLVEYAGNVFDEMSARGVYPDSCT 246

Query: 67  YSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRI 126
           Y  ++ G  R  +V  A+  + ++ ER        V+NA    ++ + C +  VN     
Sbjct: 247 YKYIIVGYCRNGNVLEADRWICEMMER-----GFVVDNATLTLIITAFCEKSLVNR---- 297

Query: 127 AEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK 186
                                          A    + + K GL+P+L++Y+S++ GLCK
Sbjct: 298 -------------------------------AVWFFHKVTKMGLSPNLINYSSMISGLCK 326

Query: 187 HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKA-RKVLQFMLSKKDVDRTR 245
            G   +A++LLEE ++ G+ P+ +T+  L+ GLC +   E+A R  L+ + S        
Sbjct: 327 RGSVKQAFELLEEMVKNGWKPNVYTHTSLIHGLCKKGWTERAFRLFLKLIRSDNYKPNVH 386

Query: 246 ICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM 305
                +   C  +  +    +   M +    P+  T  T+I+G CK G   +A +++  M
Sbjct: 387 TYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLIDGHCKAGNFSKAYELMELM 446

Query: 306 VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLR 365
               F  P+  T+ +I+ GL   GR +EA  LL      +  + G VTY  ++    +  
Sbjct: 447 SNEGF-FPNTCTYNSIVDGLCKRGRAEEAFKLLNTGFQNQIEADG-VTYTILISEQCKRA 504

Query: 366 RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYA 425
            + +A    N M  +G   D   Y  +I   C  N + ++++ +D+++          Y 
Sbjct: 505 DMNQALVFLNKMFKVGFQPDIHLYTTLIAAFCRQNMMKDSEKLFDEVIKLGLAPTKETYT 564

Query: 426 AMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN 485
           +MI G CR  K+  AV F  ++ D G  P+ + Y  +I G CK S   EA Q+   M   
Sbjct: 565 SMICGYCREKKVSLAVKFFQKMSDHGCAPDSISYGALISGLCKESRLDEARQLYDTMIDK 624

Query: 486 GLNPDAVT 493
           GL+P  VT
Sbjct: 625 GLSPCEVT 632



 Score =  151 bits (381), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 116/487 (23%), Positives = 220/487 (45%), Gaps = 18/487 (3%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C    V EA +   +M  RG V +  + T +I  +C    ++ A   F ++   G+ PN 
Sbjct: 255 CRNGNVLEADRWICEMMERGFVVDNATLTLIITAFCEKSLVNRAVWFFHKVTKMGLSPNL 314

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           + YS ++ G+ +   V++A    F+L E M  +     N     +L+  LC++G+    F
Sbjct: 315 INYSSMISGLCKRGSVKQA----FELLEEMV-KNGWKPNVYTHTSLIHGLCKKGWTERAF 369

Query: 125 RIAEDMPQGKSVNEEF-ACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           R+   + +  +          MI   C+  +   A  +   M+++GL P+  +Y +++ G
Sbjct: 370 RLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLIDG 429

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK G   +AY+L+E     G+ P+  TY  +V+GLC     E+A K+L      +    
Sbjct: 430 HCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKLLNTGFQNQIEAD 489

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                I +   C   +  + L  L  M +   QPD+    T+I  FC+   ++++ K+ +
Sbjct: 490 GVTYTILISEQCKRADMNQALVFLNKMFKVGFQPDIHLYTTLIAAFCRQNMMKDSEKLFD 549

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           +++     AP   T+T++I G     ++  A+   +Q M   G +P  ++Y A++ GL +
Sbjct: 550 EVIKLGL-APTKETYTSMICGYCREKKVSLAVK-FFQKMSDHGCAPDSISYGALISGLCK 607

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI---VWPSNIHD 420
             R++EA+++++ M+  G+     T   +    C++     A    + +   +W   +H 
Sbjct: 608 ESRLDEARQLYDTMIDKGLSPCEVTRVTLTYEYCKTEDFASAMVILERLNKKLWIRTVH- 666

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
                 +I+ LC   K+  A  F ++L+D  V  + V      + AC  S K      L 
Sbjct: 667 -----TLIRKLCCEKKVALAALFFHKLLDKEVNVDRVTL-AAFNTACIESNKYALVSDLS 720

Query: 481 EMRKNGL 487
           E    G+
Sbjct: 721 ERISKGI 727



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 100/404 (24%), Positives = 181/404 (44%), Gaps = 21/404 (5%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEM-RHCGVLP 62
           LC    V +A +L  +M   G  PNV ++T+LIHG C+ G  + A+++F ++ R     P
Sbjct: 324 LCKRGSVKQAFELLEEMVKNGWKPNVYTHTSLIHGLCKKGWTERAFRLFLKLIRSDNYKP 383

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           N  TY+ ++ G  +   + RA +    L+ERMK E+ L  N   +  L+D  C+ G  ++
Sbjct: 384 NVHTYTAMISGYCKEEKLSRAEM----LFERMK-EQGLVPNTNTYTTLIDGHCKAGNFSK 438

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
            + + E M              ++D LC+ GR   A +++    +  +    V+Y  ++ 
Sbjct: 439 AYELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKLLNTGFQNQIEADGVTYTILIS 498

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS----- 237
             CK     +A   L +  + G+ P  H Y  L+   C ++ ++ + K+   ++      
Sbjct: 499 EQCKRADMNQALVFLNKMFKVGFQPDIHLYTTLIAAFCRQNMMKDSEKLFDEVIKLGLAP 558

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
            K+   + IC       C  K  +  +     M    C PD I+   +I+G CK  R++E
Sbjct: 559 TKETYTSMIC-----GYCREKKVSLAVKFFQKMSDHGCAPDSISYGALISGLCKESRLDE 613

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           A ++ + M+  K  +P  VT  T+ +          A+ +L ++  +      I T + +
Sbjct: 614 ARQLYDTMI-DKGLSPCEVTRVTLTYEYCKTEDFASAMVILERLNKKL----WIRTVHTL 668

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ 401
           +R L   ++V  A   F+ +L   V  D  T A       ESN+
Sbjct: 669 IRKLCCEKKVALAALFFHKLLDKEVNVDRVTLAAFNTACIESNK 712



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/357 (22%), Positives = 149/357 (41%), Gaps = 44/357 (12%)

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
           M+      G+   A  ++  MR +GL  +    N I+    +      A  + +E    G
Sbjct: 180 MVGVFAEIGKLKEAVDMILDMRNQGLVLTTRVMNRIILVAAEMRLVEYAGNVFDEMSARG 239

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL 264
             P   TYK ++ G C   ++ +A + +  M+ +  V       + + A C       L+
Sbjct: 240 VYPDSCTYKYIIVGYCRNGNVLEADRWICEMMERGFVVDNATLTLIITAFC----EKSLV 295

Query: 265 NVLVFMLQTQCQ----PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTT 320
           N  V+      +    P++I  +++I+G CK G +++A ++L +MV   +  P+  T T+
Sbjct: 296 NRAVWFFHKVTKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGW-KPNVYTHTS 354

Query: 321 IIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI 380
           +I GL   G  + A  L  +++    Y P + TY A+                       
Sbjct: 355 LIHGLCKKGWTERAFRLFLKLIRSDNYKPNVHTYTAM----------------------- 391

Query: 381 GVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEA 440
                       I G C+  +L  A+  ++ +     + +   Y  +I G C++G   +A
Sbjct: 392 ------------ISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLIDGHCKAGNFSKA 439

Query: 441 VHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
              +  + + G  PN   YN ++DG CK     EA+++L    +N +  D VT+ IL
Sbjct: 440 YELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKLLNTGFQNQIEADGVTYTIL 496



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 92/175 (52%), Gaps = 3/175 (1%)

Query: 328 VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADST 387
           +G+++EA++++   M  +G        N ++     +R VE A  VF+ M   GV  DS 
Sbjct: 187 IGKLKEAVDMILD-MRNQGLVLTTRVMNRIILVAAEMRLVEYAGNVFDEMSARGVYPDSC 245

Query: 388 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYEL 447
           TY  +I G C +  + EA R+  +++    + DN     +I   C    ++ AV F +++
Sbjct: 246 TYKYIIVGYCRNGNVLEADRWICEMMERGFVVDNATLTLIITAFCEKSLVNRAVWFFHKV 305

Query: 448 VDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
              G++PN++ Y+ +I G CK    ++A+++L EM KNG  P+  T   L  +HG
Sbjct: 306 TKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSL--IHG 358



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 131/302 (43%), Gaps = 30/302 (9%)

Query: 212 YKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFML 271
           Y V    L G+ +LE+A +V++ M+                   +     +L   +  +L
Sbjct: 157 YIVCTMSLVGKCNLERAHEVVECMVG------------------VFAEIGKLKEAVDMIL 198

Query: 272 QTQCQPDVIT---LNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNV 328
             + Q  V+T   +N +I    +M  +E A  V ++M A +   PD+ T+  II G    
Sbjct: 199 DMRNQGLVLTTRVMNRIILVAAEMRLVEYAGNVFDEMSA-RGVYPDSCTYKYIIVGYCRN 257

Query: 329 GRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTT 388
           G + EA   + ++M +RG+     T   ++        V  A   F+ +  +G+  +   
Sbjct: 258 GNVLEADRWICEMM-ERGFVVDNATLTLIITAFCEKSLVNRAVWFFHKVTKMGLSPNLIN 316

Query: 389 YAIVIDGLCESNQLDEAKRFWDDIV---WPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY 445
           Y+ +I GLC+   + +A    +++V   W  N+   Y + ++I GLC+ G    A     
Sbjct: 317 YSSMISGLCKRGSVKQAFELLEEMVKNGWKPNV---YTHTSLIHGLCKKGWTERAFRLFL 373

Query: 446 ELVDS-GVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNR 504
           +L+ S    PN+  Y  +I G CK      A  +   M++ GL P+  T+  L   H   
Sbjct: 374 KLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLIDGHCKA 433

Query: 505 GN 506
           GN
Sbjct: 434 GN 435



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 68/284 (23%), Positives = 127/284 (44%), Gaps = 12/284 (4%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C      +A++L   M + G  PN  +Y +++ G C+ G  + A+K+ +      +
Sbjct: 427 IDGHCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKLLNTGFQNQI 486

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             + +TY++L+    +  D+ +A V + K++ ++  + D+ +    +  L+ + CR+  +
Sbjct: 487 EADGVTYTILISEQCKRADMNQALVFLNKMF-KVGFQPDIHL----YTTLIAAFCRQNMM 541

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +  ++ +++ +      +     MI   CR  +   A +    M   G  P  +SY ++
Sbjct: 542 KDSEKLFDEVIKLGLAPTKETYTSMICGYCREKKVSLAVKFFQKMSDHGCAPDSISYGAL 601

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GLCK      A QL +  I  G  P E T   L    C   D   A  +L+  L+KK 
Sbjct: 602 ISGLCKESRLDEARQLYDTMIDKGLSPCEVTRVTLTYEYCKTEDFASAMVILE-RLNKKL 660

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVF--MLQTQCQPDVITL 282
             RT   +  +R LC  K     L  L F  +L  +   D +TL
Sbjct: 661 WIRT--VHTLIRKLCCEKKVA--LAALFFHKLLDKEVNVDRVTL 700


>gi|242079087|ref|XP_002444312.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
 gi|241940662|gb|EES13807.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
          Length = 695

 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 118/507 (23%), Positives = 230/507 (45%), Gaps = 9/507 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEM-RHCG 59
           ++ L  + R  +    F  + + G  P+  ++   +      G++D A  +   M R  G
Sbjct: 130 LESLLSVGRHADVRAAFGLLVAAGARPDTFAWNKAVQACVAAGDLDEALAMLRRMGRSEG 189

Query: 60  VLP-NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREG 118
             P ++ +Y+V++ G+ R+     A     K+++ M +   ++ N   +  ++D   + G
Sbjct: 190 APPPDAFSYNVVIAGLWRSGKGSDA----LKVFDEMVDR-GVAPNQITYNTMIDGHVKGG 244

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
            +   FR+ + M Q            ++  LCR+GR      ++  M    + P   +Y+
Sbjct: 245 DLEAGFRLRDQMLQDGRKPNVVTYNVLLSGLCRAGRMDETRALMDEMTSYSMLPDGFTYS 304

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
            +  GL + G       L  E ++ G +   +T  +L+ GLC +  + KA +VL+ ++  
Sbjct: 305 ILFDGLTRTGDSRTMLSLFGESLKKGVIIGAYTCSILLNGLCKDGKVAKAEQVLEMLVHT 364

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
             V  T I N  +   C +++     ++   M     +PD IT N +ING CKM  I EA
Sbjct: 365 GLVPTTAIYNTLINGYCQVRDLQGAFSIFEQMKSRHIRPDHITYNALINGLCKMEMITEA 424

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
             ++ +M       P   TF T+I      G++++   +L   M  +G    ++++ +V+
Sbjct: 425 EDLVMEMEKSGV-DPSVETFNTLIDAYGRAGQLEKCFTVLSD-MQDKGIKSNVISFGSVV 482

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
           +   +  ++ EA  + + M+   VV ++  Y  +ID   ES   ++A    + +      
Sbjct: 483 KAFCKNGKIPEAVAILDDMIHKDVVPNAQVYNSIIDAYIESGGTEQAFLLVEKMKSSGVS 542

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI 478
              + Y  ++KGLC++ +I EA   +Y L + G+ P++V YN +I   C       A ++
Sbjct: 543 ASIFTYNLLLKGLCKNSQIDEAEELIYNLTNQGLRPDVVSYNTIISACCNKGDTDRALEL 602

Query: 479 LREMRKNGLNPDAVTWRILDKLHGNRG 505
           L+EM K  + P   T+  L    G+ G
Sbjct: 603 LQEMHKYDIRPTLRTYHPLLSALGSAG 629



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 116/485 (23%), Positives = 218/485 (44%), Gaps = 7/485 (1%)

Query: 23  RGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVER 82
           R  +P++ S   L+      G        F  +   G  P++  ++  V+  +   D++ 
Sbjct: 117 RSPLPSLSSCNLLLESLLSVGRHADVRAAFGLLVAAGARPDTFAWNKAVQACVAAGDLDE 176

Query: 83  ANVLMFKLWERMKEEEDLSVNNAAFANLV-DSLCREGYVNEVFRIAEDMPQGKSVNEEFA 141
           A      +  RM   E     +A   N+V   L R G  ++  ++ ++M        +  
Sbjct: 177 A----LAMLRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDRGVAPNQIT 232

Query: 142 CGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGI 201
              MID   + G      R+   M + G  P++V+YN ++ GLC+ G       L++E  
Sbjct: 233 YNTMIDGHVKGGDLEAGFRLRDQMLQDGRKPNVVTYNVLLSGLCRAGRMDETRALMDEMT 292

Query: 202 QFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPT 261
            +  LP   TY +L +GL    D      +    L K  +     C+I L  LC      
Sbjct: 293 SYSMLPDGFTYSILFDGLTRTGDSRTMLSLFGESLKKGVIIGAYTCSILLNGLCKDGKVA 352

Query: 262 ELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTI 321
           +   VL  ++ T   P     NT+ING+C++  ++ A  +   M + +   PD +T+  +
Sbjct: 353 KAEQVLEMLVHTGLVPTTAIYNTLINGYCQVRDLQGAFSIFEQMKS-RHIRPDHITYNAL 411

Query: 322 IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG 381
           I GL  +  I EA +L+ + M + G  P + T+N ++    R  ++E+   V + M   G
Sbjct: 412 INGLCKMEMITEAEDLVME-MEKSGVDPSVETFNTLIDAYGRAGQLEKCFTVLSDMQDKG 470

Query: 382 VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAV 441
           + ++  ++  V+   C++ ++ EA    DD++    + +  VY ++I     SG   +A 
Sbjct: 471 IKSNVISFGSVVKAFCKNGKIPEAVAILDDMIHKDVVPNAQVYNSIIDAYIESGGTEQAF 530

Query: 442 HFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLH 501
             + ++  SGV+ +I  YN+++ G CK S   EA +++  +   GL PD V++  +    
Sbjct: 531 LLVEKMKSSGVSASIFTYNLLLKGLCKNSQIDEAEELIYNLTNQGLRPDVVSYNTIISAC 590

Query: 502 GNRGN 506
            N+G+
Sbjct: 591 CNKGD 595



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 111/467 (23%), Positives = 205/467 (43%), Gaps = 54/467 (11%)

Query: 4   LCGLSRVG---EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           + GL R G   +A K+F +M  RG  PN ++Y T+I G+ + G+++  +++ D+M   G 
Sbjct: 202 IAGLWRSGKGSDALKVFDEMVDRGVAPNQITYNTMIDGHVKGGDLEAGFRLRDQMLQDGR 261

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +TY+VL+ G+ R   ++    LM ++         +  +   ++ L D L R G  
Sbjct: 262 KPNVVTYNVLLSGLCRAGRMDETRALMDEMTSY-----SMLPDGFTYSILFDGLTRTGDS 316

Query: 121 NEVFRI-AEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
             +  +  E + +G  +   + C  +++ LC+ G+   A +V+ ++   GL P+   YN+
Sbjct: 317 RTMLSLFGESLKKGVIIGA-YTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTAIYNT 375

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           +++G C+      A+ + E+       P   TY  L+ GLC    + +A  ++  M  K 
Sbjct: 376 LINGYCQVRDLQGAFSIFEQMKSRHIRPDHITYNALINGLCKMEMITEAEDLVMEM-EKS 434

Query: 240 DVDRT-RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
            VD +    N  + A        +   VL  M     + +VI+  +V+  FCK G+I EA
Sbjct: 435 GVDPSVETFNTLIDAYGRAGQLEKCFTVLSDMQDKGIKSNVISFGSVVKAFCKNGKIPEA 494

Query: 299 LKVLNDMVAGKFCAPDAVTFTTII-----------------------------------F 323
           + +L+DM+  K   P+A  + +II                                    
Sbjct: 495 VAILDDMIH-KDVVPNAQVYNSIIDAYIESGGTEQAFLLVEKMKSSGVSASIFTYNLLLK 553

Query: 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 383
           GL    +I EA  L+Y +  Q G  P +V+YN ++         + A E+   M    + 
Sbjct: 554 GLCKNSQIDEAEELIYNLTNQ-GLRPDVVSYNTIISACCNKGDTDRALELLQEMHKYDIR 612

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKG 430
               TY  ++  L  + ++ + +  +  +V     H N   ++ I G
Sbjct: 613 PTLRTYHPLLSALGSAGRVHDMECLYQHMV-----HKNVEPSSSIYG 654


>gi|297833172|ref|XP_002884468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330308|gb|EFH60727.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 119/463 (25%), Positives = 217/463 (46%), Gaps = 8/463 (1%)

Query: 35  LIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERM 94
           + H  CR+G    +  + + M   G  P+ +  + L++G    R+V +A V + ++ E+ 
Sbjct: 91  IFHRSCRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNVPKA-VRVMEILEKF 149

Query: 95  KEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGR 154
            + +       A+  L++  C+   +++  R+ + M       +      MI SLC  G+
Sbjct: 150 GQPDVF-----AYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGK 204

Query: 155 NHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKV 214
              A +V+  +      P++++Y  ++      GG   A +LL+E +  G  P   TY  
Sbjct: 205 LDLALKVLDQLLSDNCQPTVITYTILIEATMLEGGVDEALKLLDEMLSRGLKPDMFTYNT 264

Query: 215 LVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQ 274
           ++ G+C E  +++A ++++ +  K         NI LRAL       E   ++  M   +
Sbjct: 265 IIRGMCKEGMVDRAFEMIRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEK 324

Query: 275 CQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEA 334
           C P+V+T + +I   C+ G+IEEA+ +L  ++  K   PDA ++  +I      GR+  A
Sbjct: 325 CDPNVVTYSILITTLCRDGKIEEAMNLLK-LMKEKGLTPDAYSYDPLIAAFCREGRLDVA 383

Query: 335 LNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVID 394
           +  L + M   G  P IV YN VL  L +  + ++A E+F  +  +G   +S++Y  +  
Sbjct: 384 IEFL-ETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFS 442

Query: 395 GLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTP 454
            L  S     A     ++V      D   Y +MI  LCR G + +A   L ++      P
Sbjct: 443 ALWSSGDKIRALHMILEMVSNGIDPDEITYNSMISCLCREGMVDKAFELLVDMRSCEFHP 502

Query: 455 NIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           ++V YN+V+ G CK     +A  +L  M  NG  P+  T+ +L
Sbjct: 503 SVVTYNIVLLGFCKAHRIEDAIDVLDSMVGNGCRPNETTYTVL 545



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 105/402 (26%), Positives = 187/402 (46%), Gaps = 3/402 (0%)

Query: 93  RMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRS 152
           R +  + L   +     +    CR G   E   + E M +     +   C  +I      
Sbjct: 74  RQQHSQSLGFRDTQMLKIFHRSCRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTL 133

Query: 153 GRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTY 212
                A RV+ ++ K G  P + +YN++++G CK      A ++L+      + P   TY
Sbjct: 134 RNVPKAVRVMEILEKFG-QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTY 192

Query: 213 KVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQ 272
            +++  LC    L+ A KVL  +LS           I + A  L     E L +L  ML 
Sbjct: 193 NIMIGSLCSRGKLDLALKVLDQLLSDNCQPTVITYTILIEATMLEGGVDEALKLLDEMLS 252

Query: 273 TQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQ 332
              +PD+ T NT+I G CK G ++ A +++ ++   K C PD +++  ++  LLN G+ +
Sbjct: 253 RGLKPDMFTYNTIIRGMCKEGMVDRAFEMIRNLEL-KGCEPDVISYNILLRALLNQGKWE 311

Query: 333 EALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIV 392
           E   L+ ++  ++   P +VTY+ ++  L R  ++EEA  +   M   G+  D+ +Y  +
Sbjct: 312 EGEKLMTKMFSEK-CDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPL 370

Query: 393 IDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGV 452
           I   C   +LD A  F + ++    + D   Y  ++  LC++GK  +A+    +L + G 
Sbjct: 371 IAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGC 430

Query: 453 TPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
           +PN   YN +         K  A  ++ EM  NG++PD +T+
Sbjct: 431 SPNSSSYNTMFSALWSSGDKIRALHMILEMVSNGIDPDEITY 472



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 101/413 (24%), Positives = 199/413 (48%), Gaps = 7/413 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C ++R+ +A ++   M+S+   P+ V+Y  +I   C  G++D+A KV D++     
Sbjct: 161 INGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLDQLLSDNC 220

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P  +TY++L+   +    V+ A  L+ ++  R  + +  + N      ++  +C+EG V
Sbjct: 221 QPTVITYTILIEATMLEGGVDEALKLLDEMLSRGLKPDMFTYN-----TIIRGMCKEGMV 275

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +  F +  ++       +  +   ++ +L   G+     +++  M      P++V+Y+ +
Sbjct: 276 DRAFEMIRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSIL 335

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +  LC+ G    A  LL+   + G  P  ++Y  L+   C E  L+ A + L+ M+S   
Sbjct: 336 ITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGC 395

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           +      N  L  LC      + L +   + +  C P+  + NT+ +     G    AL 
Sbjct: 396 LPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALH 455

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           ++ +MV+     PD +T+ ++I  L   G + +A  LL   M    + P +VTYN VL G
Sbjct: 456 MILEMVSNGI-DPDEITYNSMISCLCREGMVDKAFELLVD-MRSCEFHPSVVTYNIVLLG 513

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413
             +  R+E+A +V + M+G G   + TTY ++I+G+  +    EA    +D+V
Sbjct: 514 FCKAHRIEDAIDVLDSMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLV 566



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 111/216 (51%), Gaps = 3/216 (1%)

Query: 290 CKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSP 349
           C+ G   E+L +L  MV   +  PD +  T +I G   +  + +A+ ++ +++ + G  P
Sbjct: 96  CRSGNYIESLHLLETMVRKGY-NPDVILCTKLIKGFFTLRNVPKAVRVM-EILEKFG-QP 152

Query: 350 GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFW 409
            +  YNA++ G  ++ R+++A  V + M       D+ TY I+I  LC   +LD A +  
Sbjct: 153 DVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVL 212

Query: 410 DDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKL 469
           D ++  +       Y  +I+     G + EA+  L E++  G+ P++  YN +I G CK 
Sbjct: 213 DQLLSDNCQPTVITYTILIEATMLEGGVDEALKLLDEMLSRGLKPDMFTYNTIIRGMCKE 272

Query: 470 SMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
            M   A++++R +   G  PD +++ IL +   N+G
Sbjct: 273 GMVDRAFEMIRNLELKGCEPDVISYNILLRALLNQG 308



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 125/254 (49%), Gaps = 4/254 (1%)

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
           T++  I+ R+ C   N  E L++L  M++    PDVI    +I GF  +  + +A++V+ 
Sbjct: 86  TQMLKIFHRS-CRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNVPKAVRVME 144

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
             +  KF  PD   +  +I G   + RI +A  +L + M  + +SP  VTYN ++  L  
Sbjct: 145 --ILEKFGQPDVFAYNALINGFCKMNRIDDATRVLDR-MRSKDFSPDTVTYNIMIGSLCS 201

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
             +++ A +V + +L         TY I+I+       +DEA +  D+++      D + 
Sbjct: 202 RGKLDLALKVLDQLLSDNCQPTVITYTILIEATMLEGGVDEALKLLDEMLSRGLKPDMFT 261

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y  +I+G+C+ G +  A   +  L   G  P+++ YN+++          E  +++ +M 
Sbjct: 262 YNTIIRGMCKEGMVDRAFEMIRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMF 321

Query: 484 KNGLNPDAVTWRIL 497
               +P+ VT+ IL
Sbjct: 322 SEKCDPNVVTYSIL 335


>gi|297808491|ref|XP_002872129.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297317966|gb|EFH48388.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 588

 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 116/407 (28%), Positives = 201/407 (49%), Gaps = 7/407 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC L  + +A  L  +M+  G  PN VSY TLI G C    +D A  +F  +   G+
Sbjct: 161 LNGLCKLGYIEKADGLVREMREMGPSPNCVSYNTLIKGLCSVNNVDKALYLFSTLNKYGI 220

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLS--VNNAAFANLVDSLCREG 118
            PN +T +++V  + +   +   N    KL E + +   ++  ++      L+DS  + G
Sbjct: 221 KPNRVTCNIIVHALCQKGVIGNNNT---KLLEEILDSSQVNAPLDIVTCTILMDSCFKNG 277

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
            V +   + ++M Q     +      +I  LC SG    A   +  M KRG+ P + +YN
Sbjct: 278 NVVQALEVWKEMSQKNVPTDSVVYNVIIRGLCSSGNMVAAYGFMCDMVKRGVNPDVFTYN 337

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
           +++  LCK G    A  L       G  P + +YKV+++GLC + D+++A + LQ ML +
Sbjct: 338 TLISALCKAGKFDVACDLHGTMQNVGVAPDQISYKVIIQGLCIQGDVDRANEFLQSMLKR 397

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
             +    + N+ +       + +  L+VL  ML    +P+V T N +I+G+ K GR+ +A
Sbjct: 398 SLLPEVLLWNVVIDGYGRYGDTSCALSVLNLMLSYGVKPNVYTNNALIHGYVKGGRLIDA 457

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
             V N+M + K   PD  T+  ++     +G ++ A   LY  M +RG  P I+TY  ++
Sbjct: 458 WWVKNEMRSTKI-HPDTTTYNLLVGAACTLGHLRLAFQ-LYDEMLKRGCQPDIITYTELV 515

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA 405
           RGL    R++EA+ + + M   G+  D   + I++       + DEA
Sbjct: 516 RGLCWKGRLKEAESLLSRMQVSGITMDHVPFLILVKKYTRLQRPDEA 562



 Score =  151 bits (381), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 108/410 (26%), Positives = 203/410 (49%), Gaps = 12/410 (2%)

Query: 96  EEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACG---HMIDSLCRS 152
           +++D   +  A  N++D + +   ++ +  + E + Q K+   + +      ++  LC  
Sbjct: 74  DQKDQKRDPEAIFNVLDYILKSS-LDRLASLRESVCQTKNFEYDDSLSIHSSIMRDLCLQ 132

Query: 153 GRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTY 212
           G+   A  +   M + G  P L+ +N +++GLCK G   +A  L+ E  + G  P+  +Y
Sbjct: 133 GKMDAALWLREKMLRSGFIPGLIMHNHLLNGLCKLGYIEKADGLVREMREMGPSPNCVSY 192

Query: 213 KVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRI-CNIYLRALC----LIKNPTELLNVL 267
             L++GLC  ++++KA  +    L+K  +   R+ CNI + ALC    +  N T+LL  +
Sbjct: 193 NTLIKGLCSVNNVDKALYLFS-TLNKYGIKPNRVTCNIIVHALCQKGVIGNNNTKLLEEI 251

Query: 268 VFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLN 327
           +   Q     D++T   +++   K G + +AL+V  +M + K    D+V +  II GL +
Sbjct: 252 LDSSQVNAPLDIVTCTILMDSCFKNGNVVQALEVWKEM-SQKNVPTDSVVYNVIIRGLCS 310

Query: 328 VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADST 387
            G +  A   +   M +RG +P + TYN ++  L +  + + A ++   M  +GV  D  
Sbjct: 311 SGNMVAAYGFMCD-MVKRGVNPDVFTYNTLISALCKAGKFDVACDLHGTMQNVGVAPDQI 369

Query: 388 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYEL 447
           +Y ++I GLC    +D A  F   ++  S + +  ++  +I G  R G    A+  L  +
Sbjct: 370 SYKVIIQGLCIQGDVDRANEFLQSMLKRSLLPEVLLWNVVIDGYGRYGDTSCALSVLNLM 429

Query: 448 VDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           +  GV PN+   N +I G  K     +A+ +  EMR   ++PD  T+ +L
Sbjct: 430 LSYGVKPNVYTNNALIHGYVKGGRLIDAWWVKNEMRSTKIHPDTTTYNLL 479



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 107/433 (24%), Positives = 186/433 (42%), Gaps = 45/433 (10%)

Query: 108 ANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRK 167
           ++++  LC +G ++    + E M +   +       H+++ LC+ G    A  +V  MR+
Sbjct: 123 SSIMRDLCLQGKMDAALWLREKMLRSGFIPGLIMHNHLLNGLCKLGYIEKADGLVREMRE 182

Query: 168 RGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGES---- 223
            G +P+ VSYN+++ GLC      +A  L     ++G  P+  T  ++V  LC +     
Sbjct: 183 MGPSPNCVSYNTLIKGLCSVNNVDKALYLFSTLNKYGIKPNRVTCNIIVHALCQKGVIGN 242

Query: 224 -----------------------------------DLEKARKVLQFMLSKKDVDRTRICN 248
                                              ++ +A +V + M  K     + + N
Sbjct: 243 NNTKLLEEILDSSQVNAPLDIVTCTILMDSCFKNGNVVQALEVWKEMSQKNVPTDSVVYN 302

Query: 249 IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 308
           + +R LC   N       +  M++    PDV T NT+I+  CK G+ + A   L+  +  
Sbjct: 303 VIIRGLCSSGNMVAAYGFMCDMVKRGVNPDVFTYNTLISALCKAGKFDVACD-LHGTMQN 361

Query: 309 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE 368
              APD +++  II GL   G +  A N   Q M +R   P ++ +N V+ G  R     
Sbjct: 362 VGVAPDQISYKVIIQGLCIQGDVDRA-NEFLQSMLKRSLLPEVLLWNVVIDGYGRYGDTS 420

Query: 369 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFW-DDIVWPSNIH-DNYVYAA 426
            A  V N ML  GV  +  T   +I G  +  +L +A  +W  + +  + IH D   Y  
Sbjct: 421 CALSVLNLMLSYGVKPNVYTNNALIHGYVKGGRLIDA--WWVKNEMRSTKIHPDTTTYNL 478

Query: 427 MIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG 486
           ++   C  G +  A     E++  G  P+I+ Y  ++ G C     +EA  +L  M+ +G
Sbjct: 479 LVGAACTLGHLRLAFQLYDEMLKRGCQPDIITYTELVRGLCWKGRLKEAESLLSRMQVSG 538

Query: 487 LNPDAVTWRILDK 499
           +  D V + IL K
Sbjct: 539 ITMDHVPFLILVK 551



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 131/304 (43%), Gaps = 41/304 (13%)

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
           D   I +  +R LCL       L +   ML++   P +I  N ++NG CK+G IE+A  +
Sbjct: 117 DSLSIHSSIMRDLCLQGKMDAALWLREKMLRSGFIPGLIMHNHLLNGLCKLGYIEKADGL 176

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
           + +M      +P+ V++ T+I GL +V  + +AL  L+  + + G  P  VT N ++  L
Sbjct: 177 VREM-REMGPSPNCVSYNTLIKGLCSVNNVDKAL-YLFSTLNKYGIKPNRVTCNIIVHAL 234

Query: 362 ---------------------------------------FRLRRVEEAKEVFNCMLGIGV 382
                                                  F+   V +A EV+  M    V
Sbjct: 235 CQKGVIGNNNTKLLEEILDSSQVNAPLDIVTCTILMDSCFKNGNVVQALEVWKEMSQKNV 294

Query: 383 VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVH 442
             DS  Y ++I GLC S  +  A  F  D+V      D + Y  +I  LC++GK   A  
Sbjct: 295 PTDSVVYNVIIRGLCSSGNMVAAYGFMCDMVKRGVNPDVFTYNTLISALCKAGKFDVACD 354

Query: 443 FLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
               + + GV P+ + Y V+I G C       A + L+ M K  L P+ + W ++   +G
Sbjct: 355 LHGTMQNVGVAPDQISYKVIIQGLCIQGDVDRANEFLQSMLKRSLLPEVLLWNVVIDGYG 414

Query: 503 NRGN 506
             G+
Sbjct: 415 RYGD 418



 Score = 47.0 bits (110), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 46/87 (52%), Gaps = 1/87 (1%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C L  +  A +L+ +M  RG  P++++YT L+ G C  G +  A  +   M+  G+  + 
Sbjct: 484 CTLGHLRLAFQLYDEMLKRGCQPDIITYTELVRGLCWKGRLKEAESLLSRMQVSGITMDH 543

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLW 91
           + + +LV+   R +  + A  L++K W
Sbjct: 544 VPFLILVKKYTRLQRPDEA-YLVYKKW 569


>gi|317106735|dbj|BAJ53231.1| JHL06P13.11 [Jatropha curcas]
          Length = 826

 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 131/540 (24%), Positives = 236/540 (43%), Gaps = 45/540 (8%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   +V E   L      +G VPN+V Y TLI GYC+ G+++ A  +F E++  G LP 
Sbjct: 212 LCKEGKVEEGRHLIEKRWGKGCVPNIVFYNTLIDGYCKNGDIERANLLFKELKVKGFLPT 271

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWER------------------------------ 93
             TY  ++    +    E  + L+ ++ ER                              
Sbjct: 272 VKTYGAMINAFCKKGKFEAVDKLLVEMKERGLAVSLQIFNGIIDARFKHGCEIEAADAVR 331

Query: 94  MKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSG 153
              E     + A +  L++  C +G V E   + E   +      +F+   +I +  ++G
Sbjct: 332 WMIESGCEPDMATYNTLINGSCSKGKVREAEELLEHAIRRGLFPNKFSYTPLIHAFSKNG 391

Query: 154 RNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYK 213
               AS ++  M +RG T  L++Y ++VHGL   G    A  + ++ ++ G LP  + Y 
Sbjct: 392 EYVRASELLIEMSERGHTLDLIAYGALVHGLVVAGEVDVALTVRDKMMERGILPDANIYN 451

Query: 214 VLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQT 273
           VL+ GLC +     A+++L  ML +       +    +       N  E   +    ++ 
Sbjct: 452 VLMSGLCKKGRFPAAKQLLVEMLDQNVTPDAFVNATLVDGFIRHGNLDEAKKLFQLTIER 511

Query: 274 QCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQE 333
                V+  N +I G+CK G + +AL     M  G   +PD  T++TII G +    ++ 
Sbjct: 512 GIDTSVVECNAMIKGYCKYGMMNDALLCFKRMFNGVH-SPDEFTYSTIIDGYVKQNDLRG 570

Query: 334 ALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVI 393
           AL  ++ +M ++   P +VT+ +++ G  R   +  A++VF  M   G   +  TY I+I
Sbjct: 571 ALR-MFGLMLKKTCKPNVVTFTSLINGFCRNGDLNRAEKVFEEMRSFGFEPNVVTYTILI 629

Query: 394 DGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKI-----------HEAVH 442
              C+  +L +A  F++ ++    I ++  +  ++ GL  +  I           +  + 
Sbjct: 630 GYFCKEGKLTKACFFFEQMLINKCIPNDATFNYLVNGLTNNNGIAISSKRSNSQPNLTLE 689

Query: 443 FLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
           F   ++  G    I  YN ++   C+  M + A Q+  +M   G  PD V++  L  LHG
Sbjct: 690 FFGMMISDGWDWRIAAYNSILLCLCQHKMVKPALQLHDKMMSKGFPPDPVSFIAL--LHG 747



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 125/501 (24%), Positives = 233/501 (46%), Gaps = 14/501 (2%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLI--HGYCRTGEMDVAYKVFDEMRHCGVLPNSLT 66
           +V  A K++ +M  R    +V +YT  I   G C+ G+++    + ++    G +PN + 
Sbjct: 182 KVEIARKVYDEMVDRNG--DVDNYTVCIVTKGLCKEGKVEEGRHLIEKRWGKGCVPNIVF 239

Query: 67  YSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRI 126
           Y+ L+ G  +  D+ERAN+L  +L     + +        +  ++++ C++G    V ++
Sbjct: 240 YNTLIDGYCKNGDIERANLLFKEL-----KVKGFLPTVKTYGAMINAFCKKGKFEAVDKL 294

Query: 127 AEDMPQ-GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLC 185
             +M + G +V+ +   G +ID+  + G    A+  V  M + G  P + +YN++++G C
Sbjct: 295 LVEMKERGLAVSLQIFNG-IIDARFKHGCEIEAADAVRWMIESGCEPDMATYNTLINGSC 353

Query: 186 KHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTR 245
             G    A +LLE  I+ G  P++ +Y  L+       +  +A ++L  M  +       
Sbjct: 354 SKGKVREAEELLEHAIRRGLFPNKFSYTPLIHAFSKNGEYVRASELLIEMSERGHTLDLI 413

Query: 246 ICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM 305
                +  L +       L V   M++    PD    N +++G CK GR   A ++L +M
Sbjct: 414 AYGALVHGLVVAGEVDVALTVRDKMMERGILPDANIYNVLMSGLCKKGRFPAAKQLLVEM 473

Query: 306 VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLR 365
           +  +   PDA    T++ G +  G + EA   L+Q+  +RG    +V  NA+++G  +  
Sbjct: 474 L-DQNVTPDAFVNATLVDGFIRHGNLDEA-KKLFQLTIERGIDTSVVECNAMIKGYCKYG 531

Query: 366 RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYA 425
            + +A   F  M       D  TY+ +IDG  + N L  A R +  ++  +   +   + 
Sbjct: 532 MMNDALLCFKRMFNGVHSPDEFTYSTIIDGYVKQNDLRGALRMFGLMLKKTCKPNVVTFT 591

Query: 426 AMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN 485
           ++I G CR+G ++ A     E+   G  PN+V Y ++I   CK     +A     +M  N
Sbjct: 592 SLINGFCRNGDLNRAEKVFEEMRSFGFEPNVVTYTILIGYFCKEGKLTKACFFFEQMLIN 651

Query: 486 GLNPDAVTWRIL-DKLHGNRG 505
              P+  T+  L + L  N G
Sbjct: 652 KCIPNDATFNYLVNGLTNNNG 672



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 99/390 (25%), Positives = 187/390 (47%), Gaps = 4/390 (1%)

Query: 109 NLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKR 168
           +L++ L   G V    ++ ++M       + +    +   LC+ G+      ++     +
Sbjct: 172 SLLNLLVHHGKVEIARKVYDEMVDRNGDVDNYTVCIVTKGLCKEGKVEEGRHLIEKRWGK 231

Query: 169 GLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKA 228
           G  P++V YN+++ G CK+G   RA  L +E    G+LP+  TY  ++   C +   E  
Sbjct: 232 GCVPNIVFYNTLIDGYCKNGDIERANLLFKELKVKGFLPTVKTYGAMINAFCKKGKFEAV 291

Query: 229 RKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVING 288
            K+L  M  +      +I N  + A        E  + + +M+++ C+PD+ T NT+ING
Sbjct: 292 DKLLVEMKERGLAVSLQIFNGIIDARFKHGCEIEAADAVRWMIESGCEPDMATYNTLING 351

Query: 289 FCKMGRIEEALKVLNDMVA-GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGY 347
            C  G++ EA ++L   +  G F  P+  ++T +I      G    A  LL + M +RG+
Sbjct: 352 SCSKGKVREAEELLEHAIRRGLF--PNKFSYTPLIHAFSKNGEYVRASELLIE-MSERGH 408

Query: 348 SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKR 407
           +  ++ Y A++ GL     V+ A  V + M+  G++ D+  Y +++ GLC+  +   AK+
Sbjct: 409 TLDLIAYGALVHGLVVAGEVDVALTVRDKMMERGILPDANIYNVLMSGLCKKGRFPAAKQ 468

Query: 408 FWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGAC 467
              +++  +   D +V A ++ G  R G + EA       ++ G+  ++V  N +I G C
Sbjct: 469 LLVEMLDQNVTPDAFVNATLVDGFIRHGNLDEAKKLFQLTIERGIDTSVVECNAMIKGYC 528

Query: 468 KLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           K  M  +A    + M     +PD  T+  +
Sbjct: 529 KYGMMNDALLCFKRMFNGVHSPDEFTYSTI 558



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 97/384 (25%), Positives = 166/384 (43%), Gaps = 59/384 (15%)

Query: 6   GLSRVGE---AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
             S+ GE   A +L  +M  RGH  ++++Y  L+HG    GE+DVA  V D+M   G+LP
Sbjct: 386 AFSKNGEYVRASELLIEMSERGHTLDLIAYGALVHGLVVAGEVDVALTVRDKMMERGILP 445

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFAN--LVDSL------ 114
           ++  Y+VL+ G+ +      A  L+ ++        D +V   AF N  LVD        
Sbjct: 446 DANIYNVLMSGLCKKGRFPAAKQLLVEML-------DQNVTPDAFVNATLVDGFIRHGNL 498

Query: 115 -----------------------------CREGYVNEVFRIAEDMPQGKSVNEEFACGHM 145
                                        C+ G +N+     + M  G    +EF    +
Sbjct: 499 DEAKKLFQLTIERGIDTSVVECNAMIKGYCKYGMMNDALLCFKRMFNGVHSPDEFTYSTI 558

Query: 146 IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY 205
           ID   +     GA R+  +M K+   P++V++ S+++G C++G   RA ++ EE   FG+
Sbjct: 559 IDGYVKQNDLRGALRMFGLMLKKTCKPNVVTFTSLINGFCRNGDLNRAEKVFEEMRSFGF 618

Query: 206 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALC---------- 255
            P+  TY +L+   C E  L KA    + ML  K +      N  +  L           
Sbjct: 619 EPNVVTYTILIGYFCKEGKLTKACFFFEQMLINKCIPNDATFNYLVNGLTNNNGIAISSK 678

Query: 256 -LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPD 314
                P   L     M+       +   N+++   C+   ++ AL++ + M++  F  PD
Sbjct: 679 RSNSQPNLTLEFFGMMISDGWDWRIAAYNSILLCLCQHKMVKPALQLHDKMMSKGF-PPD 737

Query: 315 AVTFTTIIFGLLNVGRIQEALNLL 338
            V+F  ++ GL   GR+Q+  N++
Sbjct: 738 PVSFIALLHGLCLEGRLQDWNNVI 761



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 82/360 (22%), Positives = 153/360 (42%), Gaps = 5/360 (1%)

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
           F C  ++  L R         ++  M+ + L P+  + + ++      G    A +L   
Sbjct: 97  FVCSSLLKLLARFRVFKEIENLLETMKSKELIPTCEALSFVISAYAGSGLVKEALELYNT 156

Query: 200 GIQF-GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK-DVDRTRICNIYLRALCLI 257
            I     +P       L+  L     +E ARKV   M+ +  DVD   +C I  + LC  
Sbjct: 157 VIDVHNCVPDVFACNSLLNLLVHHGKVEIARKVYDEMVDRNGDVDNYTVC-IVTKGLCKE 215

Query: 258 KNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVT 317
               E  +++       C P+++  NT+I+G+CK G IE A  +  ++    F  P   T
Sbjct: 216 GKVEEGRHLIEKRWGKGCVPNIVFYNTLIDGYCKNGDIERANLLFKELKVKGFL-PTVKT 274

Query: 318 FTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCM 377
           +  +I      G+  EA++ L   M +RG +  +  +N ++   F+     EA +    M
Sbjct: 275 YGAMINAFCKKGKF-EAVDKLLVEMKERGLAVSLQIFNGIIDARFKHGCEIEAADAVRWM 333

Query: 378 LGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKI 437
           +  G   D  TY  +I+G C   ++ EA+   +  +      + + Y  +I    ++G+ 
Sbjct: 334 IESGCEPDMATYNTLINGSCSKGKVREAEELLEHAIRRGLFPNKFSYTPLIHAFSKNGEY 393

Query: 438 HEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
             A   L E+ + G T +++ Y  ++ G         A  +  +M + G+ PDA  + +L
Sbjct: 394 VRASELLIEMSERGHTLDLIAYGALVHGLVVAGEVDVALTVRDKMMERGILPDANIYNVL 453


>gi|357130059|ref|XP_003566674.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 833

 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 134/534 (25%), Positives = 232/534 (43%), Gaps = 45/534 (8%)

Query: 4   LCGLSRVGEAHKLFFDM--KSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVL 61
           LC  SR   A  L   M  KS G  PNVV+Y T+IHG  R GE+  A  +F EM   GV+
Sbjct: 200 LCEDSRSQRALDLLHTMVKKSGGCSPNVVTYNTVIHGLFREGEVSKACNLFHEMMQQGVV 259

Query: 62  PNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVN 121
           P+ +TY+ ++  + + R +++A +++     R         N   +  ++      G   
Sbjct: 260 PDVVTYTSIIDALCKARAMDKAELVL-----RQMISNGFQPNKVTYNCMIHGYSISGQWK 314

Query: 122 EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
           E   +  +M     +     C   + SLC+ G++  A+     M  +G  P+LV+Y+ ++
Sbjct: 315 ETAGMFREMTSQGLMPNIVTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPNLVTYSVLL 374

Query: 182 HGLCKHG----------------------------------GCMRAYQLLEEGIQ-FGYL 206
           HG    G                                  G M    L+   +Q  G +
Sbjct: 375 HGYATEGCFVDMLNLFNSMEGNGIVADQRVFNIVIDAYGKRGMMDETMLIFTQMQEQGVI 434

Query: 207 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 266
           P   TY +++        L  A      M++        + +  ++  C+  N  +   +
Sbjct: 435 PDACTYGIVIAAFSRMGRLADAMDKFNQMIAMGLKPEGIVYHSLIQGFCMHGNLVKAKEL 494

Query: 267 LVFMLQTQC-QPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 325
           +  M+     +P+++  N++IN  CK GR+ EA  +  D V      PD +TF ++I G 
Sbjct: 495 VSEMMSRGIPRPNIVFFNSIINSLCKEGRVVEAHDIF-DFVIHIGERPDVITFNSLIDGY 553

Query: 326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 385
             VG+I++A  +L   M   G  P +V+YN ++ G  R  R+++   +F  ML  GV   
Sbjct: 554 GLVGKIEKAFGVL-DAMISAGIEPDVVSYNTLIDGYCRNGRIDDGLILFGEMLSKGVKPT 612

Query: 386 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY 445
           + TY I++ GL    +   AK+   +++      D      ++ GLCR+    EA+    
Sbjct: 613 TITYGIILHGLFNDGRTVGAKKMCHEMIESGTTMDISTCGIILGGLCRNNCDDEAIAMFK 672

Query: 446 ELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
           +L    V  NI   N +ID   K+  + EA ++   +   GL P+A T+ ++ K
Sbjct: 673 KLGAMNVKFNIAIINTMIDAMYKVRKREEAKELFDSISATGLVPNASTYGVMIK 726



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 136/527 (25%), Positives = 222/527 (42%), Gaps = 78/527 (14%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGY--------------------- 39
           +D LC    + +A  +   M S G  PN V+Y  +IHGY                     
Sbjct: 269 IDALCKARAMDKAELVLRQMISNGFQPNKVTYNCMIHGYSISGQWKETAGMFREMTSQGL 328

Query: 40  --------------CRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANV 85
                         C+ G+   A + FD M   G  PN +TYSVL+ G       E   V
Sbjct: 329 MPNIVTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPNLVTYSVLLHGYA----TEGCFV 384

Query: 86  LMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHM 145
            M  L+  M E   +  +   F  ++D+  + G ++E   I   M +   + +    G +
Sbjct: 385 DMLNLFNSM-EGNGIVADQRVFNIVIDAYGKRGMMDETMLIFTQMQEQGVIPDACTYGIV 443

Query: 146 IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY 205
           I +  R GR   A      M   GL P  + Y+S++ G C HG  ++A +L+ E +  G 
Sbjct: 444 IAAFSRMGRLADAMDKFNQMIAMGLKPEGIVYHSLIQGFCMHGNLVKAKELVSEMMSRGI 503

Query: 206 L-PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL 264
             P+   +  ++  LC E  + +A  +  F++   +                        
Sbjct: 504 PRPNIVFFNSIINSLCKEGRVVEAHDIFDFVIHIGE------------------------ 539

Query: 265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 324
                      +PDVIT N++I+G+  +G+IE+A  VL+ M++     PD V++ T+I G
Sbjct: 540 -----------RPDVITFNSLIDGYGLVGKIEKAFGVLDAMISAGI-EPDVVSYNTLIDG 587

Query: 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 384
               GRI + L +L+  M  +G  P  +TY  +L GLF   R   AK++ + M+  G   
Sbjct: 588 YCRNGRIDDGL-ILFGEMLSKGVKPTTITYGIILHGLFNDGRTVGAKKMCHEMIESGTTM 646

Query: 385 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFL 444
           D +T  I++ GLC +N  DEA   +  +   +   +  +   MI  + +  K  EA    
Sbjct: 647 DISTCGIILGGLCRNNCDDEAIAMFKKLGAMNVKFNIAIINTMIDAMYKVRKREEAKELF 706

Query: 445 YELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 491
             +  +G+ PN   Y V+I    K     EA  +   M K+G  P +
Sbjct: 707 DSISATGLVPNASTYGVMIKNLLKEGSVEEADNMFSLMEKSGCAPSS 753



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 138/528 (26%), Positives = 230/528 (43%), Gaps = 73/528 (13%)

Query: 6   GLSRVGEAHK---LFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           GL R GE  K   LF +M  +G VP+VV+YT++I   C+   MD A  V  +M   G  P
Sbjct: 236 GLFREGEVSKACNLFHEMMQQGVVPDVVTYTSIIDALCKARAMDKAELVLRQMISNGFQP 295

Query: 63  NSLTYSVLVRG------------VLR-------TRDVERANVLMFKLWERMKEEEDLSVN 103
           N +TY+ ++ G            + R         ++   N  M  L +  K +E     
Sbjct: 296 NKVTYNCMIHGYSISGQWKETAGMFREMTSQGLMPNIVTCNSYMSSLCKHGKSKEAAEFF 355

Query: 104 NAAFA-----NLVD-SLCREGYVNE-----VFRIAEDMPQGKSVNEEFACGHMIDSLCRS 152
           ++  A     NLV  S+   GY  E     +  +   M     V ++     +ID+  + 
Sbjct: 356 DSMAAKGHKPNLVTYSVLLHGYATEGCFVDMLNLFNSMEGNGIVADQRVFNIVIDAYGKR 415

Query: 153 GRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTY 212
           G       +   M+++G+ P   +Y  ++    + G    A     + I  G  P    Y
Sbjct: 416 GMMDETMLIFTQMQEQGVIPDACTYGIVIAAFSRMGRLADAMDKFNQMIAMGLKPEGIVY 475

Query: 213 KVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC--NIYLRALCLIKNPTELLNVLVFM 270
             L++G C   +L KA++++  M+S+  + R  I   N  + +LC      E  ++  F+
Sbjct: 476 HSLIQGFCMHGNLVKAKELVSEMMSR-GIPRPNIVFFNSIINSLCKEGRVVEAHDIFDFV 534

Query: 271 LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR 330
           +    +PDVIT N++I+G+  +G+IE+A  VL+ M++     PD V++ T+I G    GR
Sbjct: 535 IHIGERPDVITFNSLIDGYGLVGKIEKAFGVLDAMISAGI-EPDVVSYNTLIDGYCRNGR 593

Query: 331 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYA 390
           I + L +L+  M  +G  P  +TY  +L GLF   R   AK++ + M+  G   D +T  
Sbjct: 594 IDDGL-ILFGEMLSKGVKPTTITYGIILHGLFNDGRTVGAKKMCHEMIESGTTMDISTCG 652

Query: 391 IVIDGLCESN-----------------------------------QLDEAKRFWDDIVWP 415
           I++ GLC +N                                   + +EAK  +D I   
Sbjct: 653 IILGGLCRNNCDDEAIAMFKKLGAMNVKFNIAIINTMIDAMYKVRKREEAKELFDSISAT 712

Query: 416 SNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463
             + +   Y  MIK L + G + EA +    +  SG  P+    N +I
Sbjct: 713 GLVPNASTYGVMIKNLLKEGSVEEADNMFSLMEKSGCAPSSRLLNYII 760



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 113/483 (23%), Positives = 215/483 (44%), Gaps = 11/483 (2%)

Query: 19  DMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRT- 77
           + + R  +P V +Y  L+   CRT    V + +F      G+  + +  S+L++ +    
Sbjct: 109 EARPRVALPTVCTYNILMDCCCRTRRPTVGFALFGRFLKTGLKMDVIVASILLKCLYHAK 168

Query: 78  RDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDM--PQGKS 135
           R  +  N+L+ ++ E   E + +S N      +V +LC +        +   M    G  
Sbjct: 169 RSDDVVNLLLHRMPELGVEPDTISYN-----TVVKTLCEDSRSQRALDLLHTMVKKSGGC 223

Query: 136 VNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQ 195
                    +I  L R G    A  + + M ++G+ P +V+Y SI+  LCK     +A  
Sbjct: 224 SPNVVTYNTVIHGLFREGEVSKACNLFHEMMQQGVVPDVVTYTSIIDALCKARAMDKAEL 283

Query: 196 LLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALC 255
           +L + I  G+ P++ TY  ++ G       ++   + + M S+  +     CN Y+ +LC
Sbjct: 284 VLRQMISNGFQPNKVTYNCMIHGYSISGQWKETAGMFREMTSQGLMPNIVTCNSYMSSLC 343

Query: 256 LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA 315
                 E       M     +P+++T + +++G+   G   + L + N M  G     D 
Sbjct: 344 KHGKSKEAAEFFDSMAAKGHKPNLVTYSVLLHGYATEGCFVDMLNLFNSM-EGNGIVADQ 402

Query: 316 VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN 375
             F  +I      G + E + L++  M ++G  P   TY  V+    R+ R+ +A + FN
Sbjct: 403 RVFNIVIDAYGKRGMMDETM-LIFTQMQEQGVIPDACTYGIVIAAFSRMGRLADAMDKFN 461

Query: 376 CMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV-YAAMIKGLCRS 434
            M+ +G+  +   Y  +I G C    L +AK    +++       N V + ++I  LC+ 
Sbjct: 462 QMIAMGLKPEGIVYHSLIQGFCMHGNLVKAKELVSEMMSRGIPRPNIVFFNSIINSLCKE 521

Query: 435 GKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
           G++ EA      ++  G  P+++ +N +IDG   +    +A+ +L  M   G+ PD V++
Sbjct: 522 GRVVEAHDIFDFVIHIGERPDVITFNSLIDGYGLVGKIEKAFGVLDAMISAGIEPDVVSY 581

Query: 495 RIL 497
             L
Sbjct: 582 NTL 584



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 119/471 (25%), Positives = 215/471 (45%), Gaps = 15/471 (3%)

Query: 40  CRTGEMDVAYKVF-----DEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERM 94
           CR G   +A  +F     +E R    LP   TY++L+    RTR        +F  + + 
Sbjct: 91  CRDGP-SLAVALFNRICREEARPRVALPTVCTYNILMDCCCRTRR-PTVGFALFGRFLKT 148

Query: 95  KEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGR 154
             + D+ V +     L  +   +  VN +      MP+     +  +   ++ +LC   R
Sbjct: 149 GLKMDVIVASILLKCLYHAKRSDDVVNLLL---HRMPELGVEPDTISYNTVVKTLCEDSR 205

Query: 155 NHGASRVVYVMRKR--GLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTY 212
           +  A  +++ M K+  G +P++V+YN+++HGL + G   +A  L  E +Q G +P   TY
Sbjct: 206 SQRALDLLHTMVKKSGGCSPNVVTYNTVIHGLFREGEVSKACNLFHEMMQQGVVPDVVTY 265

Query: 213 KVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQ 272
             +++ LC    ++KA  VL+ M+S          N  +    +     E   +   M  
Sbjct: 266 TSIIDALCKARAMDKAELVLRQMISNGFQPNKVTYNCMIHGYSISGQWKETAGMFREMTS 325

Query: 273 TQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQ 332
               P+++T N+ ++  CK G+ +EA +  + M A K   P+ VT++ ++ G    G   
Sbjct: 326 QGLMPNIVTCNSYMSSLCKHGKSKEAAEFFDSM-AAKGHKPNLVTYSVLLHGYATEGCFV 384

Query: 333 EALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIV 392
           + LN L+  M   G       +N V+    +   ++E   +F  M   GV+ D+ TY IV
Sbjct: 385 DMLN-LFNSMEGNGIVADQRVFNIVIDAYGKRGMMDETMLIFTQMQEQGVIPDACTYGIV 443

Query: 393 IDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGV 452
           I       +L +A   ++ ++      +  VY ++I+G C  G + +A   + E++  G+
Sbjct: 444 IAAFSRMGRLADAMDKFNQMIAMGLKPEGIVYHSLIQGFCMHGNLVKAKELVSEMMSRGI 503

Query: 453 T-PNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
             PNIV +N +I+  CK     EA+ I   +   G  PD +T+  L   +G
Sbjct: 504 PRPNIVFFNSIINSLCKEGRVVEAHDIFDFVIHIGERPDVITFNSLIDGYG 554



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 86/310 (27%), Positives = 148/310 (47%), Gaps = 19/310 (6%)

Query: 206 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLS--------KKDVDRTRICNIYLRALCLI 257
           LP+  TY +L++  C        R  + F L         K DV    + +I L+ L   
Sbjct: 116 LPTVCTYNILMDCCC-----RTRRPTVGFALFGRFLKTGLKMDV---IVASILLKCLYHA 167

Query: 258 KNPTELLNVLVF-MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKF-CAPDA 315
           K   +++N+L+  M +   +PD I+ NTV+   C+  R + AL +L+ MV     C+P+ 
Sbjct: 168 KRSDDVVNLLLHRMPELGVEPDTISYNTVVKTLCEDSRSQRALDLLHTMVKKSGGCSPNV 227

Query: 316 VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN 375
           VT+ T+I GL   G + +A NL +++M Q+G  P +VTY +++  L + R +++A+ V  
Sbjct: 228 VTYNTVIHGLFREGEVSKACNLFHEMM-QQGVVPDVVTYTSIIDALCKARAMDKAELVLR 286

Query: 376 CMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG 435
            M+  G   +  TY  +I G   S Q  E    + ++     + +     + +  LC+ G
Sbjct: 287 QMISNGFQPNKVTYNCMIHGYSISGQWKETAGMFREMTSQGLMPNIVTCNSYMSSLCKHG 346

Query: 436 KIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWR 495
           K  EA  F   +   G  PN+V Y+V++ G        +   +   M  NG+  D   + 
Sbjct: 347 KSKEAAEFFDSMAAKGHKPNLVTYSVLLHGYATEGCFVDMLNLFNSMEGNGIVADQRVFN 406

Query: 496 ILDKLHGNRG 505
           I+   +G RG
Sbjct: 407 IVIDAYGKRG 416



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/302 (20%), Positives = 138/302 (45%), Gaps = 5/302 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   RV EAH +F  +   G  P+V+++ +LI GY   G+++ A+ V D M   G+
Sbjct: 515 INSLCKEGRVVEAHDIFDFVIHIGERPDVITFNSLIDGYGLVGKIEKAFGVLDAMISAGI 574

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ ++Y+ L+ G  R   ++   +L  ++  +  +   ++     +  ++  L  +G  
Sbjct: 575 EPDVVSYNTLIDGYCRNGRIDDGLILFGEMLSKGVKPTTIT-----YGIILHGLFNDGRT 629

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
               ++  +M +  +  +   CG ++  LCR+  +  A  +   +    +  ++   N++
Sbjct: 630 VGAKKMCHEMIESGTTMDISTCGIILGGLCRNNCDDEAIAMFKKLGAMNVKFNIAIINTM 689

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +  + K      A +L +     G +P+  TY V+++ L  E  +E+A  +   M     
Sbjct: 690 IDAMYKVRKREEAKELFDSISATGLVPNASTYGVMIKNLLKEGSVEEADNMFSLMEKSGC 749

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
              +R+ N  +R L       +  N +  +   +   +  T++ ++  F + G+  E +K
Sbjct: 750 APSSRLLNYIIRVLLEKGEIVKAGNYMFKVDGKRISLEASTVSLLMALFSREGKYWEDVK 809

Query: 301 VL 302
           +L
Sbjct: 810 LL 811


>gi|356497996|ref|XP_003517841.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 600

 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 122/500 (24%), Positives = 232/500 (46%), Gaps = 13/500 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D +     V  A   +  M +    P V  +  L     +      A  +   M + GV
Sbjct: 55  LDSMRNAKSVDVALDFYHKMVTMKPFPCVKDFNLLFSIVAKMKHYTTAISLIKHMSYIGV 114

Query: 61  LPNSLTYSVLVRGVLR-TRDVERANVL--MFKLWERMKEEEDLSVNNAAFANLVDSLCRE 117
            P   T ++++  + R +  V   +VL  MFK+         +  +   F  +V+ LC E
Sbjct: 115 KPTVHTLNIVINCLCRLSHAVFGFSVLGLMFKI--------GVEPSIVTFNTIVNGLCVE 166

Query: 118 GYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
           G V +  R  + +      ++ + CG + + LC+ G +  A   +  M ++     + +Y
Sbjct: 167 GNVAQAIRFVDHLKDMGYESDSYTCGAITNGLCKVGHSSAALSYLKKMEEKNCNLDVTAY 226

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
           + +V GLCK G    A  L  +    G  P   TY  L+ GLC     ++A  +L  M+ 
Sbjct: 227 SGVVDGLCKDGMVFEALNLFSQMTGKGIQPDLFTYNCLIHGLCNFDRWKEAAPLLANMMR 286

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
           K  +   +  N+           +   ++  FM+    + DV+T  ++I   C + ++++
Sbjct: 287 KGIMPDVQTFNVIAGRFFKTGMISRAKSIFSFMVHMGIEHDVVTYTSIIGAHCMLNQMKD 346

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           A++V  D++  K C P+ VT+T++I G      + +A+  L + M   G  P +VT++ +
Sbjct: 347 AMEVF-DLMISKGCLPNIVTYTSLIHGWCETKNMNKAMYFLGE-MVNNGLDPNVVTWSTL 404

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 417
           + G+ +  +   AKE+F  M   G + +  T AI++DGL + N   EA   + ++   + 
Sbjct: 405 IGGVCKAGKPVAAKELFLVMHKHGQLPNLQTCAIILDGLFKCNFHSEAMSLFRELEKMNW 464

Query: 418 IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQ 477
             +  +Y  ++ G+C SGK+++A+     L   GV  ++V YN++I G CK  +  +A  
Sbjct: 465 DLNIIIYNIILDGMCSSGKLNDALELFSYLSSKGVKIDVVTYNIMIKGLCKEGLLDDAED 524

Query: 478 ILREMRKNGLNPDAVTWRIL 497
           +L +M +NG  P+  T+ + 
Sbjct: 525 LLMKMEENGCPPNECTYNVF 544



 Score =  161 bits (408), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 119/478 (24%), Positives = 215/478 (44%), Gaps = 7/478 (1%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M   G  P V +   +I+  CR       + V   M   GV P+ +T++ +V G+    +
Sbjct: 109 MSYIGVKPTVHTLNIVINCLCRLSHAVFGFSVLGLMFKIGVEPSIVTFNTIVNGLCVEGN 168

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
           V +A +      + M  E D     A    + + LC+ G+ +      + M +     + 
Sbjct: 169 VAQA-IRFVDHLKDMGYESDSYTCGA----ITNGLCKVGHSSAALSYLKKMEEKNCNLDV 223

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
            A   ++D LC+ G    A  +   M  +G+ P L +YN ++HGLC       A  LL  
Sbjct: 224 TAYSGVVDGLCKDGMVFEALNLFSQMTGKGIQPDLFTYNCLIHGLCNFDRWKEAAPLLAN 283

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
            ++ G +P   T+ V+         + +A+ +  FM+              + A C++  
Sbjct: 284 MMRKGIMPDVQTFNVIAGRFFKTGMISRAKSIFSFMVHMGIEHDVVTYTSIIGAHCMLNQ 343

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
             + + V   M+   C P+++T  ++I+G+C+   + +A+  L +MV      P+ VT++
Sbjct: 344 MKDAMEVFDLMISKGCLPNIVTYTSLIHGWCETKNMNKAMYFLGEMVNNGL-DPNVVTWS 402

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
           T+I G+   G+   A   L+ VM + G  P + T   +L GLF+     EA  +F  +  
Sbjct: 403 TLIGGVCKAGK-PVAAKELFLVMHKHGQLPNLQTCAIILDGLFKCNFHSEAMSLFRELEK 461

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
           +    +   Y I++DG+C S +L++A   +  +       D   Y  MIKGLC+ G + +
Sbjct: 462 MNWDLNIIIYNIILDGMCSSGKLNDALELFSYLSSKGVKIDVVTYNIMIKGLCKEGLLDD 521

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           A   L ++ ++G  PN   YNV + G  +     ++ + L  M+  G   DA T + L
Sbjct: 522 AEDLLMKMEENGCPPNECTYNVFVQGLLRRYQISKSTKYLMFMKDKGFQADATTTKFL 579



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 93/394 (23%), Positives = 168/394 (42%), Gaps = 42/394 (10%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    V EA  LF  M  +G  P++ +Y  LIHG C       A  +   M   G+
Sbjct: 230 VDGLCKDGMVFEALNLFSQMTGKGIQPDLFTYNCLIHGLCNFDRWKEAAPLLANMMRKGI 289

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P+  T++V+     +T  + RA  + F     M  E D+    +               
Sbjct: 290 MPDVQTFNVIAGRFFKTGMISRAKSI-FSFMVHMGIEHDVVTYTS--------------- 333

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                                   +I + C   +   A  V  +M  +G  P++V+Y S+
Sbjct: 334 ------------------------IIGAHCMLNQMKDAMEVFDLMISKGCLPNIVTYTSL 369

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +HG C+     +A   L E +  G  P+  T+  L+ G+C       A+++   M     
Sbjct: 370 IHGWCETKNMNKAMYFLGEMVNNGLDPNVVTWSTLIGGVCKAGKPVAAKELFLVMHKHGQ 429

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           +   + C I L  L      +E +++   + +     ++I  N +++G C  G++ +AL+
Sbjct: 430 LPNLQTCAIILDGLFKCNFHSEAMSLFRELEKMNWDLNIIIYNIILDGMCSSGKLNDALE 489

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           + +  ++ K    D VT+  +I GL   G + +A +LL + M + G  P   TYN  ++G
Sbjct: 490 LFS-YLSSKGVKIDVVTYNIMIKGLCKEGLLDDAEDLLMK-MEENGCPPNECTYNVFVQG 547

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVID 394
           L R  ++ ++ +    M   G  AD+TT   +I+
Sbjct: 548 LLRRYQISKSTKYLMFMKDKGFQADATTTKFLIN 581



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 111/267 (41%), Gaps = 2/267 (0%)

Query: 235 MLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGR 294
           M++ K     +  N+    +  +K+ T  ++++  M     +P V TLN VIN  C++  
Sbjct: 74  MVTMKPFPCVKDFNLLFSIVAKMKHYTTAISLIKHMSYIGVKPTVHTLNIVINCLCRLSH 133

Query: 295 IEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTY 354
                 VL  M       P  VTF TI+ GL   G + +A+  +   +   GY     T 
Sbjct: 134 AVFGFSVLGLMFKIG-VEPSIVTFNTIVNGLCVEGNVAQAIRFVDH-LKDMGYESDSYTC 191

Query: 355 NAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVW 414
            A+  GL ++     A      M       D T Y+ V+DGLC+   + EA   +  +  
Sbjct: 192 GAITNGLCKVGHSSAALSYLKKMEEKNCNLDVTAYSGVVDGLCKDGMVFEALNLFSQMTG 251

Query: 415 PSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKRE 474
                D + Y  +I GLC   +  EA   L  ++  G+ P++  +NV+     K  M   
Sbjct: 252 KGIQPDLFTYNCLIHGLCNFDRWKEAAPLLANMMRKGIMPDVQTFNVIAGRFFKTGMISR 311

Query: 475 AYQILREMRKNGLNPDAVTWRILDKLH 501
           A  I   M   G+  D VT+  +   H
Sbjct: 312 AKSIFSFMVHMGIEHDVVTYTSIIGAH 338



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 76/165 (46%), Gaps = 2/165 (1%)

Query: 338 LYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLC 397
           L + M   G  P + T N V+  L RL        V   M  IGV     T+  +++GLC
Sbjct: 105 LIKHMSYIGVKPTVHTLNIVINCLCRLSHAVFGFSVLGLMFKIGVEPSIVTFNTIVNGLC 164

Query: 398 ESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIV 457
               + +A RF D +       D+Y   A+  GLC+ G    A+ +L ++ +     ++ 
Sbjct: 165 VEGNVAQAIRFVDHLKDMGYESDSYTCGAITNGLCKVGHSSAALSYLKKMEEKNCNLDVT 224

Query: 458 CYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
            Y+ V+DG CK  M  EA  +  +M   G+ PD  T+  L  +HG
Sbjct: 225 AYSGVVDGLCKDGMVFEALNLFSQMTGKGIQPDLFTYNCL--IHG 267


>gi|115461911|ref|NP_001054555.1| Os05g0132000 [Oryza sativa Japonica Group]
 gi|52353663|gb|AAU44229.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113578106|dbj|BAF16469.1| Os05g0132000 [Oryza sativa Japonica Group]
 gi|125550727|gb|EAY96436.1| hypothetical protein OsI_18334 [Oryza sativa Indica Group]
          Length = 637

 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 133/500 (26%), Positives = 225/500 (45%), Gaps = 18/500 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D L   + VG    ++ +M+  G  PNV +Y  LI   C+   +D A K+ DEM   G 
Sbjct: 129 LDALLRENMVGAVVPVYDNMRKAGVDPNVYTYNLLIRALCQNDRVDAARKMLDEMSRKGC 188

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +++  +V G+ +   VE A   +          E + V  A++  +V +LC E  +
Sbjct: 189 HPDEVSHGTIVSGMCKLGRVEEARGFL---------AETVPV-QASYNAVVHALCGEFRM 238

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            EVF +  +M Q            ++D+ C++     A  ++  M   G TP+++++ ++
Sbjct: 239 WEVFSVVNEMVQRGLQPNVVTYTTIVDAFCKARELRMACAILARMVSMGCTPNVLTFTAL 298

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           V G  + G    A  +    +  G+ PS  +Y VL+ GLC   DL+ A   L F  S K 
Sbjct: 299 VKGFFEDGKVHDALSMWHWMVDEGWAPSTISYNVLIRGLCCIGDLKGA---LDFFNSMKR 355

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVF---MLQTQCQPDVITLNTVINGFCKMGRIEE 297
                    Y   +    N  +L   ++    M  + C+P+V+    +I+  CK    ++
Sbjct: 356 NALLPNATTYSTLVDGFSNAGDLDGAMLIWNEMKSSGCKPNVVVYTNMIDVLCKKMMFDQ 415

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           A  +++ M+    C P+ VTF T+I  L + GR+  ALN+ +  M + G  P   TYN +
Sbjct: 416 AESLIDKMLMDN-CPPNTVTFNTLIGRLCDCGRVGRALNVFHG-MRRNGCHPNDRTYNEL 473

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 417
           L GLFR    ++A  +   ML  G      TY  VI+ LC+      A      ++    
Sbjct: 474 LHGLFREGNHKDAFAMVIEMLNNGFELSLVTYNTVINCLCQMCMRKHAMLLLGRMMVQGI 533

Query: 418 IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQ 477
             D + + A+I   C+ GK+  A   L ++       N+V Y ++I   C       A  
Sbjct: 534 QPDAFTFNAIIHAYCKEGKVSIAACLLGQMNAVNCPRNVVAYTILISELCNQGKLSNAMV 593

Query: 478 ILREMRKNGLNPDAVTWRIL 497
            L +M   G+ P+  TW +L
Sbjct: 594 YLLKMLYEGICPNEATWNVL 613



 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 99/393 (25%), Positives = 165/393 (41%), Gaps = 40/393 (10%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LCG  R+ E   +  +M  RG  PNVV+YTT++  +C+  E+ +A  +   M   G  PN
Sbjct: 232 LCGEFRMWEVFSVVNEMVQRGLQPNVVTYTTIVDAFCKARELRMACAILARMVSMGCTPN 291

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEE-------------------------- 97
            LT++ LV+G      V  A      +W  M +E                          
Sbjct: 292 VLTFTALVKGFFEDGKVHDA----LSMWHWMVDEGWAPSTISYNVLIRGLCCIGDLKGAL 347

Query: 98  --------EDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSL 149
                     L  N   ++ LVD     G ++    I  +M             +MID L
Sbjct: 348 DFFNSMKRNALLPNATTYSTLVDGFSNAGDLDGAMLIWNEMKSSGCKPNVVVYTNMIDVL 407

Query: 150 CRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSE 209
           C+      A  ++  M      P+ V++N+++  LC  G   RA  +     + G  P++
Sbjct: 408 CKKMMFDQAESLIDKMLMDNCPPNTVTFNTLIGRLCDCGRVGRALNVFHGMRRNGCHPND 467

Query: 210 HTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVF 269
            TY  L+ GL  E + + A  ++  ML+          N  +  LC +      + +L  
Sbjct: 468 RTYNELLHGLFREGNHKDAFAMVIEMLNNGFELSLVTYNTVINCLCQMCMRKHAMLLLGR 527

Query: 270 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG 329
           M+    QPD  T N +I+ +CK G++  A  +L  M A   C  + V +T +I  L N G
Sbjct: 528 MMVQGIQPDAFTFNAIIHAYCKEGKVSIAACLLGQMNAVN-CPRNVVAYTILISELCNQG 586

Query: 330 RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
           ++  A+  L +++ + G  P   T+N ++R +F
Sbjct: 587 KLSNAMVYLLKMLYE-GICPNEATWNVLVRAIF 618



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 121/237 (51%), Gaps = 7/237 (2%)

Query: 270 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG 329
           M +    P+V T N +I   C+  R++ A K+L++M + K C PD V+  TI+ G+  +G
Sbjct: 148 MRKAGVDPNVYTYNLLIRALCQNDRVDAARKMLDEM-SRKGCHPDEVSHGTIVSGMCKLG 206

Query: 330 RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTY 389
           R++EA   L + +P +       +YNAV+  L    R+ E   V N M+  G+  +  TY
Sbjct: 207 RVEEARGFLAETVPVQA------SYNAVVHALCGEFRMWEVFSVVNEMVQRGLQPNVVTY 260

Query: 390 AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449
             ++D  C++ +L  A      +V      +   + A++KG    GK+H+A+   + +VD
Sbjct: 261 TTIVDAFCKARELRMACAILARMVSMGCTPNVLTFTALVKGFFEDGKVHDALSMWHWMVD 320

Query: 450 SGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
            G  P+ + YNV+I G C +   + A      M++N L P+A T+  L     N G+
Sbjct: 321 EGWAPSTISYNVLIRGLCCIGDLKGALDFFNSMKRNALLPNATTYSTLVDGFSNAGD 377



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 86/354 (24%), Positives = 163/354 (46%), Gaps = 10/354 (2%)

Query: 146 IDSLCRSGRNHGASRVVYVMRKRGL-TPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
           I +  R+G    A +  Y     G   P +  YN ++  L +         + +   + G
Sbjct: 93  IGAFARAGSADRALKTFYRASDLGCRDPGVRVYNHLLDALLRENMVGAVVPVYDNMRKAG 152

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN-IYLRALCLIKNPTEL 263
             P+ +TY +L+  LC    ++ ARK+L  M S+K      + +   +  +C +    E 
Sbjct: 153 VDPNVYTYNLLIRALCQNDRVDAARKMLDEM-SRKGCHPDEVSHGTIVSGMCKLGRVEEA 211

Query: 264 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF 323
              L   +  Q      + N V++  C   R+ E   V+N+MV  +   P+ VT+TTI+ 
Sbjct: 212 RGFLAETVPVQA-----SYNAVVHALCGEFRMWEVFSVVNEMVQ-RGLQPNVVTYTTIVD 265

Query: 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 383
                  ++ A  +L + M   G +P ++T+ A+++G F   +V +A  +++ M+  G  
Sbjct: 266 AFCKARELRMACAILAR-MVSMGCTPNVLTFTALVKGFFEDGKVHDALSMWHWMVDEGWA 324

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
             + +Y ++I GLC    L  A  F++ +   + + +   Y+ ++ G   +G +  A+  
Sbjct: 325 PSTISYNVLIRGLCCIGDLKGALDFFNSMKRNALLPNATTYSTLVDGFSNAGDLDGAMLI 384

Query: 444 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
             E+  SG  PN+V Y  +ID  CK  M  +A  ++ +M  +   P+ VT+  L
Sbjct: 385 WNEMKSSGCKPNVVVYTNMIDVLCKKMMFDQAESLIDKMLMDNCPPNTVTFNTL 438



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 94/219 (42%), Gaps = 5/219 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC      +A  L   M      PN V++ TLI   C  G +  A  VF  MR  G 
Sbjct: 404 IDVLCKKMMFDQAESLIDKMLMDNCPPNTVTFNTLIGRLCDCGRVGRALNVFHGMRRNGC 463

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN  TY+ L+ G+ R  + + A  ++ ++     E   ++ N     N +  +C   + 
Sbjct: 464 HPNDRTYNELLHGLFREGNHKDAFAMVIEMLNNGFELSLVTYNTVI--NCLCQMCMRKHA 521

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
             +  +   M QG    + F    +I + C+ G+   A+ ++  M       ++V+Y  +
Sbjct: 522 --MLLLGRMMVQGIQ-PDAFTFNAIIHAYCKEGKVSIAACLLGQMNAVNCPRNVVAYTIL 578

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGL 219
           +  LC  G    A   L + +  G  P+E T+ VLV  +
Sbjct: 579 ISELCNQGKLSNAMVYLLKMLYEGICPNEATWNVLVRAI 617


>gi|255548724|ref|XP_002515418.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis]
 gi|223545362|gb|EEF46867.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis]
          Length = 1113

 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 135/515 (26%), Positives = 240/515 (46%), Gaps = 27/515 (5%)

Query: 4    LCGLSRVGE---AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
            + GL + G+   A +LF  M   G  PN +++ T++   C+  E+D+A K+  +M     
Sbjct: 586  IAGLGKEGQVQRAMELFASMTGNGCPPNTITFNTILDCLCKNDEVDLALKMLYKMTTMNC 645

Query: 61   LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            +P+ LT++ ++ G++  + V  A      +W   + ++ L+ +      L+  + + G +
Sbjct: 646  MPDVLTFNTIIHGLVIEKRVSDA------IWLFHQMKKMLTPDCVTLCTLLPGVVKNGLM 699

Query: 121  NEVFRIAEDMPQ--GKSVNEEFACGHMIDSLCRSGRNH----GASRVVYVMRKRG--LTP 172
             + F+IAED     G  V+  F    M   L ++G       G   V   + K G  L P
Sbjct: 700  EDAFKIAEDFVHRLGVYVDRRFWEDLMGGILTQAGTEKTILFGDRLVCGRVCKDGSVLMP 759

Query: 173  SLVSYNSIVHGLCKHGGCMRAYQL-LEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKV 231
                   I+  LCKH   + A  + +    + G  P+  +Y  L+EG  G  + E A  +
Sbjct: 760  -------IIKVLCKHKQALVAQSVFIRFTKELGVKPTLESYNFLIEGFLGVHNDEMAWNL 812

Query: 232  LQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK 291
               M +          N+ L A        EL  +   M+ + C+P+ IT N +I    K
Sbjct: 813  FTEMKNAGCAPDVFTYNLLLDAHGKSGKINELFELYEQMICSSCKPNTITHNIIIANLVK 872

Query: 292  MGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGI 351
               +++AL +  D+V+G F +P   T+  ++ GLL  GR++EA  L ++ M   G  P  
Sbjct: 873  SNSLDKALDLFYDLVSGDF-SPTPCTYGPLLDGLLKSGRLEEAKEL-FEEMVDYGCRPNN 930

Query: 352  VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDD 411
              YN ++ G  +   V  A E+F  M+  G+  D  +Y  ++  LCE+ ++D+A  +++ 
Sbjct: 931  AIYNILINGFGKTGDVNTACELFKRMVREGIRPDLKSYTSLVGCLCEAGRVDDALHYFEK 990

Query: 412  IVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSM 471
            +       D+  Y  MI GL RS +I EA+    E+   G+ P++  YN +I       M
Sbjct: 991  LKQTGLYLDSIAYNLMIDGLGRSHRIEEALTLYDEMQSRGINPDLFTYNSLILNLGVAGM 1050

Query: 472  KREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
              +A ++  E++  GL P+  T+  L + +   GN
Sbjct: 1051 VEQAGKLYEELQFIGLEPNVFTYNALIRGYSMSGN 1085



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 133/512 (25%), Positives = 229/512 (44%), Gaps = 20/512 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D+      +G   + + +M++ G+ P+V+++T L++  C+ G +D A+ + D MR  GV
Sbjct: 341 LDKFSDCGDLGRVKEFWSEMEADGYAPDVITFTILVNALCKAGNIDEAFHLLDVMRKQGV 400

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANL--VDSLCREG 118
           LPN  TY+ L+ G+LR   ++ A      L+  M   E L V   A+  +  +D   + G
Sbjct: 401 LPNLHTYNTLISGLLRVNRLDDA----LDLFNNM---ETLGVVPTAYTYILFIDFYGKSG 453

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
             ++     E M          AC   + SL   GR   A  +   ++  GL P  V+YN
Sbjct: 454 RSDKALETFEKMKIRGIAPNIVACNASLYSLAEMGRLREAKVIFNRLKSNGLAPDSVTYN 513

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
            ++    K G    A +LL +  +    P       L+  L     +++A K+   +   
Sbjct: 514 MMMKCYSKAGQVDEAIELLSDMSENQCEPDIIVINSLINTLYKAGRVDEAWKMFCRLKDM 573

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
           K        N  +  L         + +   M    C P+ IT NT+++  CK   ++ A
Sbjct: 574 KLAPTVVTYNTLIAGLGKEGQVQRAMELFASMTGNGCPPNTITFNTILDCLCKNDEVDLA 633

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
           LK+L  M     C PD +TF TII GL+   R+ +A+ L +Q+  ++  +P  VT   +L
Sbjct: 634 LKMLYKMTTMN-CMPDVLTFNTIIHGLVIEKRVSDAIWLFHQM--KKMLTPDCVTLCTLL 690

Query: 359 RGLFRLRRVEEAKEVFNCMLG-IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 417
            G+ +   +E+A ++    +  +GV  D   +  ++ G+      ++   F D +V    
Sbjct: 691 PGVVKNGLMEDAFKIAEDFVHRLGVYVDRRFWEDLMGGILTQAGTEKTILFGDRLVCGRV 750

Query: 418 IHDNYVYAAMIKGLCRSGKIHEA----VHFLYELVDSGVTPNIVCYNVVIDGACKLSMKR 473
             D  V   +IK LC+  +   A    + F  EL   GV P +  YN +I+G   +    
Sbjct: 751 CKDGSVLMPIIKVLCKHKQALVAQSVFIRFTKEL---GVKPTLESYNFLIEGFLGVHNDE 807

Query: 474 EAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
            A+ +  EM+  G  PD  T+ +L   HG  G
Sbjct: 808 MAWNLFTEMKNAGCAPDVFTYNLLLDAHGKSG 839



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 122/492 (24%), Positives = 234/492 (47%), Gaps = 48/492 (9%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           R+ EA ++   M+  G  P+VV+YT LI   C  G++D A ++F +M+     P+ +TY 
Sbjct: 279 RIDEACRIMKRMEDDGCGPDVVTYTVLIDALCTAGKLDDAMELFVKMKASSHKPDRVTYI 338

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
            ++       D+ R      + W  M E +  + +   F  LV++LC+ G ++E F    
Sbjct: 339 TMLDKFSDCGDLGRVK----EFWSEM-EADGYAPDVITFTILVNALCKAGNIDEAF---- 389

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
                          H++D                VMRK+G+ P+L +YN+++ GL +  
Sbjct: 390 ---------------HLLD----------------VMRKQGVLPNLHTYNTLISGLLRVN 418

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVE--GLCGESDLEKARKVLQFMLSKKDVDRTRI 246
               A  L       G +P+ +TY + ++  G  G SD  KA +  + M  +        
Sbjct: 419 RLDDALDLFNNMETLGVVPTAYTYILFIDFYGKSGRSD--KALETFEKMKIRGIAPNIVA 476

Query: 247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV 306
           CN  L +L  +    E   +   +      PD +T N ++  + K G+++EA+++L+DM 
Sbjct: 477 CNASLYSLAEMGRLREAKVIFNRLKSNGLAPDSVTYNMMMKCYSKAGQVDEAIELLSDMS 536

Query: 307 AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 366
             + C PD +   ++I  L   GR+ EA  +  ++   +  +P +VTYN ++ GL +  +
Sbjct: 537 ENQ-CEPDIIVINSLINTLYKAGRVDEAWKMFCRLKDMK-LAPTVVTYNTLIAGLGKEGQ 594

Query: 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAA 426
           V+ A E+F  M G G   ++ T+  ++D LC+++++D A +    +   + + D   +  
Sbjct: 595 VQRAMELFASMTGNGCPPNTITFNTILDCLCKNDEVDLALKMLYKMTTMNCMPDVLTFNT 654

Query: 427 MIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE-MRKN 485
           +I GL    ++ +A+ +L+  +   +TP+ V    ++ G  K  +  +A++I  + + + 
Sbjct: 655 IIHGLVIEKRVSDAI-WLFHQMKKMLTPDCVTLCTLLPGVVKNGLMEDAFKIAEDFVHRL 713

Query: 486 GLNPDAVTWRIL 497
           G+  D   W  L
Sbjct: 714 GVYVDRRFWEDL 725



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 92/347 (26%), Positives = 166/347 (47%), Gaps = 14/347 (4%)

Query: 165 MRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESD 224
           MR+ G   +  SYN ++H L + G C  A ++    +  G  PS  T+  L+       D
Sbjct: 185 MREAGFHLNAYSYNGLIHLLLQSGLCREALEMYRRMVLEGLKPSLKTFSALMVATGKRRD 244

Query: 225 LEKARKVLQFMLS---KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVIT 281
            E  + +L+ M S   K ++    IC   +R L       E   ++  M    C PDV+T
Sbjct: 245 TETVKSLLEEMESLGLKPNIYTYTIC---IRVLGRAGRIDEACRIMKRMEDDGCGPDVVT 301

Query: 282 LNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLN---VGRIQEALNLL 338
              +I+  C  G++++A+++   M A     PD VT+ T++    +   +GR++E     
Sbjct: 302 YTVLIDALCTAGKLDDAMELFVKMKASSH-KPDRVTYITMLDKFSDCGDLGRVKE----F 356

Query: 339 YQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE 398
           +  M   GY+P ++T+  ++  L +   ++EA  + + M   GV+ +  TY  +I GL  
Sbjct: 357 WSEMEADGYAPDVITFTILVNALCKAGNIDEAFHLLDVMRKQGVLPNLHTYNTLISGLLR 416

Query: 399 SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVC 458
            N+LD+A   ++++     +   Y Y   I    +SG+  +A+    ++   G+ PNIV 
Sbjct: 417 VNRLDDALDLFNNMETLGVVPTAYTYILFIDFYGKSGRSDKALETFEKMKIRGIAPNIVA 476

Query: 459 YNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
            N  +    ++   REA  I   ++ NGL PD+VT+ ++ K +   G
Sbjct: 477 CNASLYSLAEMGRLREAKVIFNRLKSNGLAPDSVTYNMMMKCYSKAG 523



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 91/388 (23%), Positives = 162/388 (41%), Gaps = 43/388 (11%)

Query: 4    LCGLSRVGEAHKLFFDM-KSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
            LC   +   A  +F    K  G  P + SY  LI G+      ++A+ +F EM++ G  P
Sbjct: 764  LCKHKQALVAQSVFIRFTKELGVKPTLESYNFLIEGFLGVHNDEMAWNLFTEMKNAGCAP 823

Query: 63   NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
            +  TY++L+                                        D+  + G +NE
Sbjct: 824  DVFTYNLLL----------------------------------------DAHGKSGKINE 843

Query: 123  VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
            +F + E M              +I +L +S     A  + Y +     +P+  +Y  ++ 
Sbjct: 844  LFELYEQMICSSCKPNTITHNIIIANLVKSNSLDKALDLFYDLVSGDFSPTPCTYGPLLD 903

Query: 183  GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
            GL K G    A +L EE + +G  P+   Y +L+ G     D+  A ++ + M+ +    
Sbjct: 904  GLLKSGRLEEAKELFEEMVDYGCRPNNAIYNILINGFGKTGDVNTACELFKRMVREGIRP 963

Query: 243  RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
              +     +  LC      + L+    + QT    D I  N +I+G  +  RIEEAL + 
Sbjct: 964  DLKSYTSLVGCLCEAGRVDDALHYFEKLKQTGLYLDSIAYNLMIDGLGRSHRIEEALTLY 1023

Query: 303  NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
            ++M + +   PD  T+ ++I  L   G +++A   LY+ +   G  P + TYNA++RG  
Sbjct: 1024 DEMQS-RGINPDLFTYNSLILNLGVAGMVEQA-GKLYEELQFIGLEPNVFTYNALIRGYS 1081

Query: 363  RLRRVEEAKEVFNCMLGIGVVADSTTYA 390
                 + A  V+  M+  G   ++ T+A
Sbjct: 1082 MSGNSDSAYAVYKRMMVGGCSPNTGTFA 1109



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 67/261 (25%), Positives = 111/261 (42%), Gaps = 10/261 (3%)

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           V  T  CN  L  L + +   +++ V   M     + D+ T   +  G    G + +   
Sbjct: 121 VHTTETCNHMLEILRIHRRVGDMVVVFNLMQNQIIKRDLNTYLIIFKGLFIRGGLRQTPF 180

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
               M    F   +A ++  +I  LL  G  +EAL + Y+ M   G  P + T++A++  
Sbjct: 181 AFGKMREAGFHL-NAYSYNGLIHLLLQSGLCREALEM-YRRMVLEGLKPSLKTFSALMVA 238

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA----KRFWDDIVWPS 416
             + R  E  K +   M  +G+  +  TY I I  L  + ++DEA    KR  DD   P 
Sbjct: 239 TGKRRDTETVKSLLEEMESLGLKPNIYTYTICIRVLGRAGRIDEACRIMKRMEDDGCGP- 297

Query: 417 NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAY 476
              D   Y  +I  LC +GK+ +A+    ++  S   P+ V Y  ++D            
Sbjct: 298 ---DVVTYTVLIDALCTAGKLDDAMELFVKMKASSHKPDRVTYITMLDKFSDCGDLGRVK 354

Query: 477 QILREMRKNGLNPDAVTWRIL 497
           +   EM  +G  PD +T+ IL
Sbjct: 355 EFWSEMEADGYAPDVITFTIL 375



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/236 (26%), Positives = 98/236 (41%), Gaps = 40/236 (16%)

Query: 1    MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
            +D L    R+ EA +LF +M   G  PN   Y  LI+G+ +TG+++ A ++F  M   G+
Sbjct: 902  LDGLLKSGRLEEAKELFEEMVDYGCRPNNAIYNILINGFGKTGDVNTACELFKRMVREGI 961

Query: 61   LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             P+  +Y+                                        +LV  LC  G V
Sbjct: 962  RPDLKSYT----------------------------------------SLVGCLCEAGRV 981

Query: 121  NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            ++     E + Q     +  A   MID L RS R   A  +   M+ RG+ P L +YNS+
Sbjct: 982  DDALHYFEKLKQTGLYLDSIAYNLMIDGLGRSHRIEEALTLYDEMQSRGINPDLFTYNSL 1041

Query: 181  VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFML 236
            +  L   G   +A +L EE    G  P+  TY  L+ G     + + A  V + M+
Sbjct: 1042 ILNLGVAGMVEQAGKLYEELQFIGLEPNVFTYNALIRGYSMSGNSDSAYAVYKRMM 1097



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 60/110 (54%), Gaps = 5/110 (4%)

Query: 1    MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
            +D L    R+ EA  L+ +M+SRG  P++ +Y +LI      G ++ A K+++E++  G+
Sbjct: 1007 IDGLGRSHRIEEALTLYDEMQSRGINPDLFTYNSLILNLGVAGMVEQAGKLYEELQFIGL 1066

Query: 61   LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANL 110
             PN  TY+ L+RG   + + + A    + +++RM      S N   FA L
Sbjct: 1067 EPNVFTYNALIRGYSMSGNSDSA----YAVYKRMM-VGGCSPNTGTFAQL 1111



 Score = 47.0 bits (110), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 66/154 (42%), Gaps = 2/154 (1%)

Query: 353 TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI 412
           T N +L  L   RRV +   VFN M    +  D  TY I+  GL     L +   F    
Sbjct: 126 TCNHMLEILRIHRRVGDMVVVFNLMQNQIIKRDLNTYLIIFKGLFIRGGLRQTP-FAFGK 184

Query: 413 VWPSNIHDN-YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSM 471
           +  +  H N Y Y  +I  L +SG   EA+     +V  G+ P++  ++ ++    K   
Sbjct: 185 MREAGFHLNAYSYNGLIHLLLQSGLCREALEMYRRMVLEGLKPSLKTFSALMVATGKRRD 244

Query: 472 KREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
                 +L EM   GL P+  T+ I  ++ G  G
Sbjct: 245 TETVKSLLEEMESLGLKPNIYTYTICIRVLGRAG 278


>gi|255561943|ref|XP_002521980.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538784|gb|EEF40384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 584

 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 123/486 (25%), Positives = 224/486 (46%), Gaps = 15/486 (3%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           + H L FD K        V    L++  CR G+ + +    + M   G  P+ +  + L+
Sbjct: 59  QTHVLSFDFKE-------VHLMKLLNRSCRAGKYNESLYFLECMVDKGYTPDVILCTKLI 111

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP 131
           +G   +R++ +A  +M ++ ER  + +       A+  L+    +   +    R+ + M 
Sbjct: 112 KGFFNSRNIGKATRVM-EILERYGKPDVF-----AYNALISGFIKANQLENANRVLDRMK 165

Query: 132 QGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCM 191
               + +      MI S C  G+   A  +   + K    P++++Y  ++      GG  
Sbjct: 166 SRGFLPDVVTYNIMIGSFCSRGKLDLALEIFEELLKDNCEPTVITYTILIEATILDGGID 225

Query: 192 RAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYL 251
            A +LL+E +  G  P   TY  ++ G+C E  ++KA ++L+ + S+         NI L
Sbjct: 226 VAMKLLDEMLSKGLEPDTLTYNAIIRGMCKEMMVDKAFELLRSLSSRGCKPDIITYNILL 285

Query: 252 RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC 311
           R L      +E   ++  M+   C+P+V+T + +I   C+ G++EEA+ +L  M   K  
Sbjct: 286 RTLLSRGKWSEGEKLISEMISIGCKPNVVTHSILIGTLCRDGKVEEAVNLLRSM-KEKGL 344

Query: 312 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK 371
            PDA  +  +I G    GR+  A   L + M   G  P IV YN ++ GL R  + ++A 
Sbjct: 345 KPDAYCYDPLIAGFCREGRLDLATEFL-EYMISDGCLPDIVNYNTIMAGLCRTGKADQAL 403

Query: 372 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 431
           EVF  +  +G   + ++Y  +   L  S     A      ++      D   Y ++I  L
Sbjct: 404 EVFEKLDEVGCPPNVSSYNTLFSALWSSGDRYRALEMILKLLNQGIDPDEITYNSLISCL 463

Query: 432 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 491
           CR G + EA+  L ++      PN+V YN+++ G CK++   +A ++L  M + G  P+ 
Sbjct: 464 CRDGMVDEAIELLVDMQSGRYRPNVVSYNIILLGLCKVNRANDAIEVLAAMTEKGCQPNE 523

Query: 492 VTWRIL 497
            T+ +L
Sbjct: 524 TTYILL 529



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 121/504 (24%), Positives = 231/504 (45%), Gaps = 14/504 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +++ C   +  E+      M  +G+ P+V+  T LI G+  +  +  A +V + +   G 
Sbjct: 76  LNRSCRAGKYNESLYFLECMVDKGYTPDVILCTKLIKGFFNSRNIGKATRVMEILERYGK 135

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+   Y+ L+ G ++   +E AN    ++ +RMK    L  +   +  ++ S C  G +
Sbjct: 136 -PDVFAYNALISGFIKANQLENAN----RVLDRMKSRGFLP-DVVTYNIMIGSFCSRGKL 189

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +    I E++ +            +I++    G    A +++  M  +GL P  ++YN+I
Sbjct: 190 DLALEIFEELLKDNCEPTVITYTILIEATILDGGIDVAMKLLDEMLSKGLEPDTLTYNAI 249

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G+CK     +A++LL      G  P   TY +L+  L       +  K++  M+S   
Sbjct: 250 IRGMCKEMMVDKAFELLRSLSSRGCKPDIITYNILLRTLLSRGKWSEGEKLISEMISIGC 309

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                  +I +  LC      E +N+L  M +   +PD    + +I GFC+ GR++ A +
Sbjct: 310 KPNVVTHSILIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYCYDPLIAGFCREGRLDLATE 369

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
            L  M++   C PD V + TI+ GL   G+  +AL + ++ + + G  P + +YN +   
Sbjct: 370 FLEYMISDG-CLPDIVNYNTIMAGLCRTGKADQALEV-FEKLDEVGCPPNVSSYNTLFSA 427

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L+       A E+   +L  G+  D  TY  +I  LC    +DEA     D+       +
Sbjct: 428 LWSSGDRYRALEMILKLLNQGIDPDEITYNSLISCLCRDGMVDEAIELLVDMQSGRYRPN 487

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              Y  ++ GLC+  + ++A+  L  + + G  PN   Y ++I+G     ++ EA ++  
Sbjct: 488 VVSYNIILLGLCKVNRANDAIEVLAAMTEKGCQPNETTYILLIEGIGFSGLRAEAMELAN 547

Query: 481 EMR-KNGLNPDAV-----TWRILD 498
            +   N ++ D+      T+ +LD
Sbjct: 548 SLHGMNAISEDSFNRLNKTFPLLD 571



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 85/325 (26%), Positives = 147/325 (45%), Gaps = 5/325 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           +C    V +A +L   + SRG  P++++Y  L+      G+     K+  EM   G  PN
Sbjct: 253 MCKEMMVDKAFELLRSLSSRGCKPDIITYNILLRTLLSRGKWSEGEKLISEMISIGCKPN 312

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +T+S+L+  + R   VE A  L+     R  +E+ L  +   +  L+   CREG ++  
Sbjct: 313 VVTHSILIGTLCRDGKVEEAVNLL-----RSMKEKGLKPDAYCYDPLIAGFCREGRLDLA 367

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
               E M     + +      ++  LCR+G+   A  V   + + G  P++ SYN++   
Sbjct: 368 TEFLEYMISDGCLPDIVNYNTIMAGLCRTGKADQALEVFEKLDEVGCPPNVSSYNTLFSA 427

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           L   G   RA +++ + +  G  P E TY  L+  LC +  +++A ++L  M S +    
Sbjct: 428 LWSSGDRYRALEMILKLLNQGIDPDEITYNSLISCLCRDGMVDEAIELLVDMQSGRYRPN 487

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               NI L  LC +    + + VL  M +  CQP+  T   +I G    G   EA+++ N
Sbjct: 488 VVSYNIILLGLCKVNRANDAIEVLAAMTEKGCQPNETTYILLIEGIGFSGLRAEAMELAN 547

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNV 328
            +      + D+       F LL+V
Sbjct: 548 SLHGMNAISEDSFNRLNKTFPLLDV 572



 Score = 47.0 bits (110), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 2/117 (1%)

Query: 397 CESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNI 456
           C + + +E+  F + +V      D  +   +IKG   S  I +A   + E+++    P++
Sbjct: 80  CRAGKYNESLYFLECMVDKGYTPDVILCTKLIKGFFNSRNIGKATRVM-EILERYGKPDV 138

Query: 457 VCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN-DFGLRI 512
             YN +I G  K +    A ++L  M+  G  PD VT+ I+     +RG  D  L I
Sbjct: 139 FAYNALISGFIKANQLENANRVLDRMKSRGFLPDVVTYNIMIGSFCSRGKLDLALEI 195


>gi|357140400|ref|XP_003571756.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Brachypodium distachyon]
          Length = 673

 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 131/486 (26%), Positives = 218/486 (44%), Gaps = 46/486 (9%)

Query: 48  AYKVFDEMRH-CGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAA 106
           A  + D++ H   V P+  +Y+ ++    R       +  +  L+ RM   + +      
Sbjct: 119 ALHLLDQLPHRFAVSPSFRSYNTVLAAFARAD----CHTDVLSLYRRMVHRDRVPPTTFT 174

Query: 107 FANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMR 166
           F+    +LCR G  +E   +   M +   V +      +I +LC  G  + A+ ++  M 
Sbjct: 175 FSIAARALCRLGRADEALTMLRSMARHGCVPDTVLYQTVIHALCAQGGVNEAATLLDEMF 234

Query: 167 KRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLE 226
             G +  + ++N IVHGLC  G    A +L++  +  G +P+  TY  L++GLC  S +E
Sbjct: 235 LMGCSADVNTFNDIVHGLCTLGRLREAARLVDRMMIRGCVPNAITYGFLLKGLCLASQVE 294

Query: 227 KARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVI 286
           +AR     ML +       + N  +    L     E   +   M    C PD  T + +I
Sbjct: 295 EART----MLGRVPELNVVLFNTVIGRCLLDGKLKEAAELYETMGSKGCPPDAHTYSILI 350

Query: 287 NGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG----------------- 329
           +G CK+GR+  A+K+L +M    F AP  VT+T ++      G                 
Sbjct: 351 HGLCKLGRLGSAMKLLREMEDKGF-APSIVTYTILLHSFCRNGMWDNIRAMLEVMSDKGL 409

Query: 330 ------------------RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK 371
                             R+ +A+  + Q M  +GY P I TYN ++  L    ++EEA+
Sbjct: 410 SMNLEGYNGMICAVCKDRRMDDAMRFM-QEMKSQGYKPDICTYNTIIYHLCNNNQMEEAE 468

Query: 372 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 431
            +F  +L  GVVA++ TY  +I  L  +    +A    +D+V      D   Y  +IK L
Sbjct: 469 YLFENLLHEGVVANAITYNTLIHALLRNGSWQDAISLANDMVLHGCSLDIVSYNGLIKAL 528

Query: 432 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 491
           CR G +  ++  L E+ + G+ PN V YN++I   CK    R+A ++ +EM    L PD 
Sbjct: 529 CRDGNVDRSIMLLSEMAEKGIKPNNVSYNLLISELCKTRRVRDALELSKEMLNQELTPDI 588

Query: 492 VTWRIL 497
           VT+  L
Sbjct: 589 VTYNTL 594



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 133/499 (26%), Positives = 233/499 (46%), Gaps = 21/499 (4%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC L R  EA  +   M   G VP+ V Y T+IH  C  G ++ A  + DEM   G   +
Sbjct: 182 LCRLGRADEALTMLRSMARHGCVPDTVLYQTVIHALCAQGGVNEAATLLDEMFLMGCSAD 241

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             T++ +V G+     +  A  L+ ++  R         N   +  L+  LC    V E 
Sbjct: 242 VNTFNDIVHGLCTLGRLREAARLVDRMMIR-----GCVPNAITYGFLLKGLCLASQVEEA 296

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             +   +P+   V      G  +      G+   A+ +   M  +G  P   +Y+ ++HG
Sbjct: 297 RTMLGRVPELNVVLFNTVIGRCL----LDGKLKEAAELYETMGSKGCPPDAHTYSILIHG 352

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LCK G    A +LL E    G+ PS  TY +L+   C     +  R +L+ M      D+
Sbjct: 353 LCKLGRLGSAMKLLREMEDKGFAPSIVTYTILLHSFCRNGMWDNIRAMLEVM-----SDK 407

Query: 244 TRICNI--YLRALCLIKNPTELLNVLVFMLQTQCQ---PDVITLNTVINGFCKMGRIEEA 298
               N+  Y   +C +     + + + FM + + Q   PD+ T NT+I   C   ++EEA
Sbjct: 408 GLSMNLEGYNGMICAVCKDRRMDDAMRFMQEMKSQGYKPDICTYNTIIYHLCNNNQMEEA 467

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
             +  +++     A +A+T+ T+I  LL  G  Q+A++L    M   G S  IV+YN ++
Sbjct: 468 EYLFENLLHEGVVA-NAITYNTLIHALLRNGSWQDAISLAND-MVLHGCSLDIVSYNGLI 525

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
           + L R   V+ +  + + M   G+  ++ +Y ++I  LC++ ++ +A     +++     
Sbjct: 526 KALCRDGNVDRSIMLLSEMAEKGIKPNNVSYNLLISELCKTRRVRDALELSKEMLNQELT 585

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI 478
            D   Y  +I GLC+ G +H A++ L +L +  V  +I+ YN++I   CK  +  +A  +
Sbjct: 586 PDIVTYNTLINGLCKMGWMHAALNLLEKLHNEDVHADIITYNILISWHCKARLLHDASML 645

Query: 479 LREMRKNGLNPDAVTWRIL 497
           L     +G+ P+  TW I+
Sbjct: 646 LNRAVTSGITPNERTWGIM 664



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 118/462 (25%), Positives = 211/462 (45%), Gaps = 15/462 (3%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC    V EA  L  +M   G   +V ++  ++HG C  G +  A ++ D M   G +PN
Sbjct: 217 LCAQGGVNEAATLLDEMFLMGCSADVNTFNDIVHGLCTLGRLREAARLVDRMMIRGCVPN 276

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           ++TY  L++G+     VE A  ++ ++ E         +N   F  ++     +G + E 
Sbjct: 277 AITYGFLLKGLCLASQVEEARTMLGRVPE---------LNVVLFNTVIGRCLLDGKLKEA 327

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             + E M       +      +I  LC+ GR   A +++  M  +G  PS+V+Y  ++H 
Sbjct: 328 AELYETMGSKGCPPDAHTYSILIHGLCKLGRLGSAMKLLREMEDKGFAPSIVTYTILLHS 387

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            C++G       +LE     G   +   Y  ++  +C +  ++ A + +Q M  K    +
Sbjct: 388 FCRNGMWDNIRAMLEVMSDKGLSMNLEGYNGMICAVCKDRRMDDAMRFMQEM--KSQGYK 445

Query: 244 TRIC--NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
             IC  N  +  LC      E   +   +L      + IT NT+I+   + G  ++A+ +
Sbjct: 446 PDICTYNTIIYHLCNNNQMEEAEYLFENLLHEGVVANAITYNTLIHALLRNGSWQDAISL 505

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
            NDMV    C+ D V++  +I  L   G +  ++ LL + M ++G  P  V+YN ++  L
Sbjct: 506 ANDMVLHG-CSLDIVSYNGLIKALCRDGNVDRSIMLLSE-MAEKGIKPNNVSYNLLISEL 563

Query: 362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
            + RRV +A E+   ML   +  D  TY  +I+GLC+   +  A    + +       D 
Sbjct: 564 CKTRRVRDALELSKEMLNQELTPDIVTYNTLINGLCKMGWMHAALNLLEKLHNEDVHADI 623

Query: 422 YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463
             Y  +I   C++  +H+A   L   V SG+TPN   + +++
Sbjct: 624 ITYNILISWHCKARLLHDASMLLNRAVTSGITPNERTWGIMV 665



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/255 (23%), Positives = 117/255 (45%), Gaps = 40/255 (15%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           +C   R+ +A +   +MKS+G+ P++ +Y T+I+  C   +M+ A  +F+ + H GV+ N
Sbjct: 423 VCKDRRMDDAMRFMQEMKSQGYKPDICTYNTIIYHLCNNNQMEEAEYLFENLLHEGVVAN 482

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           ++TY+ L+  +LR    + A  L   +          S++  ++  L+ +LCR+G V+  
Sbjct: 483 AITYNTLIHALLRNGSWQDAISLANDM-----VLHGCSLDIVSYNGLIKALCRDGNVDRS 537

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             +  +M +        +   +I  LC++ R   A  +   M  + LTP +V+YN++++G
Sbjct: 538 IMLLSEMAEKGIKPNNVSYNLLISELCKTRRVRDALELSKEMLNQELTPDIVTYNTLING 597

Query: 184 LCKHGGCMRAYQLLEE-----------------------------------GIQFGYLPS 208
           LCK G    A  LLE+                                    +  G  P+
Sbjct: 598 LCKMGWMHAALNLLEKLHNEDVHADIITYNILISWHCKARLLHDASMLLNRAVTSGITPN 657

Query: 209 EHTYKVLVEGLCGES 223
           E T+ ++V+    +S
Sbjct: 658 ERTWGIMVQNFVRKS 672



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 101/236 (42%), Gaps = 5/236 (2%)

Query: 265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 324
           ++L+        PD+ +L             E AL +L  +   +   P   +    +F 
Sbjct: 54  SLLLLQWYAASHPDLSSLPLRPLLAAANADPERALFLLESLPPSRV-PPLRESLLIPLFR 112

Query: 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 384
            L  GR   AL+LL Q+  +   SP   +YN VL    R     +   ++  M+    V 
Sbjct: 113 SLAPGR---ALHLLDQLPHRFAVSPSFRSYNTVLAAFARADCHTDVLSLYRRMVHRDRVP 169

Query: 385 DST-TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
            +T T++I    LC   + DEA      +     + D  +Y  +I  LC  G ++EA   
Sbjct: 170 PTTFTFSIAARALCRLGRADEALTMLRSMARHGCVPDTVLYQTVIHALCAQGGVNEAATL 229

Query: 444 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
           L E+   G + ++  +N ++ G C L   REA +++  M   G  P+A+T+  L K
Sbjct: 230 LDEMFLMGCSADVNTFNDIVHGLCTLGRLREAARLVDRMMIRGCVPNAITYGFLLK 285



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 52/87 (59%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           + +LC   RV +A +L  +M ++   P++V+Y TLI+G C+ G M  A  + +++ +  V
Sbjct: 560 ISELCKTRRVRDALELSKEMLNQELTPDIVTYNTLINGLCKMGWMHAALNLLEKLHNEDV 619

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLM 87
             + +TY++L+    + R +  A++L+
Sbjct: 620 HADIITYNILISWHCKARLLHDASMLL 646


>gi|255585035|ref|XP_002533226.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526958|gb|EEF29158.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 606

 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 123/465 (26%), Positives = 212/465 (45%), Gaps = 24/465 (5%)

Query: 34  TLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWER 93
           T I  Y        A ++F+ M+   + PN LT + L+  ++R                 
Sbjct: 140 TSIGAYVSCNRPHHAAQIFNRMKRLHLKPNLLTRNTLINALVR----------------- 182

Query: 94  MKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSL--CR 151
              +  + ++ A F N++     +  ++E   +   M       +  +   ++D L  CR
Sbjct: 183 YPSKPSVCLSKAIFTNVI-KFGVKNKLSEAIGLIGKMKDFSCFPDNASYNTILDVLWLCR 241

Query: 152 SGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHT 211
           SG+   +   +  + + GL P  ++YN+I+HG C+ G   +A+Q   + ++  + P   T
Sbjct: 242 SGKTDQSIDKLNELLESGLVPHQITYNTIIHGYCREGQVEKAFQFRNKMVEKSFKPDLFT 301

Query: 212 YKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFML 271
             +L+ GLC E  L+ A K+    +SK         N  +  LC      E  ++L  M 
Sbjct: 302 CNILLRGLCTEGMLDNALKLFNTWISKGKAIDAVTYNTIISGLCKEGRFEEAFDLLAEME 361

Query: 272 QTQCQPDVITLNTVINGFCKM-GRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR 330
           + +  PD  T N ++       G++E+A +  N MV   F  PD  T   ++ GL   G 
Sbjct: 362 EKKLGPDCYTYNAILCALADAEGQVEKAFQFRNKMVEKSF-KPDLFTCNILLRGLCTEGM 420

Query: 331 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI-GVVADSTTY 389
           +  AL L +     +G +   VTYN ++ GL +  R EEA ++   M    G+V D TTY
Sbjct: 421 LDNALKL-FNTWISKGKAIDAVTYNTIISGLCKEGRFEEAFDLLAEMEEKNGLVPDQTTY 479

Query: 390 AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449
             +I G C   Q+++A +F + +V  S   D +    +++GLCR G + +A+      + 
Sbjct: 480 NTIILGYCREGQVEKAFQFRNKMVEKSFKPDLFTCNILLRGLCREGMLVKALKLFNTWIS 539

Query: 450 SGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
            G   + V YN +I G CK     EA+ +L EM++  L PD  T+
Sbjct: 540 KGKAIDAVTYNTIISGLCKEGRFEEAFDLLAEMKEKKLGPDCYTY 584



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 111/410 (27%), Positives = 196/410 (47%), Gaps = 14/410 (3%)

Query: 8   SRVGEAHKLFFDMKSRGHVPNVVSYTTLIH--GYCRTGEMDVAYKVFDEMRHCGVLPNSL 65
           +++ EA  L   MK     P+  SY T++     CR+G+ D +    +E+   G++P+ +
Sbjct: 206 NKLSEAIGLIGKMKDFSCFPDNASYNTILDVLWLCRSGKTDQSIDKLNELLESGLVPHQI 265

Query: 66  TYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFR 125
           TY+ ++ G  R   VE+A     K+ E+  + +  + N      L+  LC EG ++   +
Sbjct: 266 TYNTIIHGYCREGQVEKAFQFRNKMVEKSFKPDLFTCNI-----LLRGLCTEGMLDNALK 320

Query: 126 IAED-MPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
           +    + +GK++ +      +I  LC+ GR   A  ++  M ++ L P   +YN+I+  L
Sbjct: 321 LFNTWISKGKAI-DAVTYNTIISGLCKEGRFEEAFDLLAEMEEKKLGPDCYTYNAILCAL 379

Query: 185 C-KHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
               G   +A+Q   + ++  + P   T  +L+ GLC E  L+ A K+    +SK     
Sbjct: 380 ADAEGQVEKAFQFRNKMVEKSFKPDLFTCNILLRGLCTEGMLDNALKLFNTWISKGKAID 439

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQ-CQPDVITLNTVINGFCKMGRIEEALKVL 302
               N  +  LC      E  ++L  M +     PD  T NT+I G+C+ G++E+A +  
Sbjct: 440 AVTYNTIISGLCKEGRFEEAFDLLAEMEEKNGLVPDQTTYNTIILGYCREGQVEKAFQFR 499

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
           N MV   F  PD  T   ++ GL   G + +AL L +     +G +   VTYN ++ GL 
Sbjct: 500 NKMVEKSF-KPDLFTCNILLRGLCREGMLVKALKL-FNTWISKGKAIDAVTYNTIISGLC 557

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI 412
           +  R EEA ++   M    +  D  TY  ++  L ++ ++ EA+ F   I
Sbjct: 558 KEGRFEEAFDLLAEMKEKKLGPDCYTYNAILCALADAGRM-EAEEFMSKI 606



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 96/366 (26%), Positives = 164/366 (44%), Gaps = 43/366 (11%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   +  ++     ++   G VP+ ++Y T+IHGYCR G+++ A++  ++M      P+
Sbjct: 239 LCRSGKTDQSIDKLNELLESGLVPHQITYNTIIHGYCREGQVEKAFQFRNKMVEKSFKPD 298

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             T ++L+RG+     ++ A + +F  W    +    +++   +  ++  LC+EG   E 
Sbjct: 299 LFTCNILLRGLCTEGMLDNA-LKLFNTWISKGK----AIDAVTYNTIISGLCKEGRFEEA 353

Query: 124 FRIAEDMPQGK------SVN------------------------------EEFACGHMID 147
           F +  +M + K      + N                              + F C  ++ 
Sbjct: 354 FDLLAEMEEKKLGPDCYTYNAILCALADAEGQVEKAFQFRNKMVEKSFKPDLFTCNILLR 413

Query: 148 SLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE-GIQFGYL 206
            LC  G    A ++      +G     V+YN+I+ GLCK G    A+ LL E   + G +
Sbjct: 414 GLCTEGMLDNALKLFNTWISKGKAIDAVTYNTIISGLCKEGRFEEAFDLLAEMEEKNGLV 473

Query: 207 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 266
           P + TY  ++ G C E  +EKA +    M+ K        CNI LR LC      + L +
Sbjct: 474 PDQTTYNTIILGYCREGQVEKAFQFRNKMVEKSFKPDLFTCNILLRGLCREGMLVKALKL 533

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
               +      D +T NT+I+G CK GR EEA  +L +M   K   PD  T+  I+  L 
Sbjct: 534 FNTWISKGKAIDAVTYNTIISGLCKEGRFEEAFDLLAEMKEKKL-GPDCYTYNAILCALA 592

Query: 327 NVGRIQ 332
           + GR++
Sbjct: 593 DAGRME 598


>gi|297736961|emb|CBI26162.3| unnamed protein product [Vitis vinifera]
          Length = 636

 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 106/416 (25%), Positives = 199/416 (47%), Gaps = 11/416 (2%)

Query: 81  ERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDM---PQGKSVN 137
           ++  ++  + +  +  +   S ++++   L D+L   G  N      +     P+  S+ 
Sbjct: 137 QKNALISLRFFHWLSSQSGFSPDSSSCNVLFDALVEAGACNAAKSFLDSTNFNPKPASLE 196

Query: 138 EEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLL 197
               C      LC+ G    A  V   ++  G+  S+ ++NS++ G  + G     ++L 
Sbjct: 197 AYIRC------LCKGGLVEEAISVFGQLKGIGVCASIATWNSVLRGSVRAGRIDFVWELY 250

Query: 198 EEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLI 257
            E ++   +   HT   LV+  C E+ +     +L+ +L    V R    N  +   C  
Sbjct: 251 GEMVESSVVADVHTVGYLVQAFCDENRISDGHNLLRRVLEDGVVPRNAAFNKLISGFCKD 310

Query: 258 KNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVT 317
           K    + ++L  M+     PD+ T   V+NG CK G+  E  +V  D+    + APD V 
Sbjct: 311 KAYGRVSDLLHSMIARNRAPDIFTYQEVVNGLCKGGKGPEGFRVFKDLKDRGY-APDRVM 369

Query: 318 FTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCM 377
           +TT+I GL  +  + +A  L ++ M Q+G+ P   TYNA++ G F++  +EEA +++  M
Sbjct: 370 YTTMIHGLCRMKWLGDARKLWFE-MIQKGFLPNEYTYNAMIHGYFKIGNLEEAWKMYREM 428

Query: 378 LGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKI 437
              G    + +Y ++I GLC   ++ EA   ++++     + ++  Y A+++G C+ GKI
Sbjct: 429 CDKGYGEKTVSYNVMIKGLCSHGKIKEAHDLFEEMSHKGILRNHITYNALVRGFCKEGKI 488

Query: 438 HEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVT 493
            E  + LYEL+D G+ P+   Y  +ID  C+    + A  +  +M+  G+ P   T
Sbjct: 489 VEGANLLYELLDQGIQPSAASYAPLIDKLCQEGDMQNAKILWDDMQNRGMEPAVCT 544



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 102/402 (25%), Positives = 186/402 (46%), Gaps = 7/402 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC    V EA  +F  +K  G   ++ ++ +++ G  R G +D  ++++ EM    V+ +
Sbjct: 202 LCKGGLVEEAISVFGQLKGIGVCASIATWNSVLRGSVRAGRIDFVWELYGEMVESSVVAD 261

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             T   LV+       +   + L+     R   E+ +   NAAF  L+   C++     V
Sbjct: 262 VHTVGYLVQAFCDENRISDGHNLL-----RRVLEDGVVPRNAAFNKLISGFCKDKAYGRV 316

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             +   M       + F    +++ LC+ G+     RV   ++ RG  P  V Y +++HG
Sbjct: 317 SDLLHSMIARNRAPDIFTYQEVVNGLCKGGKGPEGFRVFKDLKDRGYAPDRVMYTTMIHG 376

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LC+      A +L  E IQ G+LP+E+TY  ++ G     +LE+A K+ + M  K   ++
Sbjct: 377 LCRMKWLGDARKLWFEMIQKGFLPNEYTYNAMIHGYFKIGNLEEAWKMYREMCDKGYGEK 436

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
           T   N+ ++ LC      E  ++   M       + IT N ++ GFCK G+I E   +L 
Sbjct: 437 TVSYNVMIKGLCSHGKIKEAHDLFEEMSHKGILRNHITYNALVRGFCKEGKIVEGANLLY 496

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           +++  +   P A ++  +I  L   G +Q A  +L+  M  RG  P + T++ ++ G  +
Sbjct: 497 ELL-DQGIQPSAASYAPLIDKLCQEGDMQNA-KILWDDMQNRGMEPAVCTHDFMITGFCK 554

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA 405
                E  E    ML   +     ++  +I  L + ++LD+A
Sbjct: 555 QGCAMEGMEWLTTMLRSKLRPQKKSFESLIQCLSQIDRLDDA 596



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 84/311 (27%), Positives = 144/311 (46%), Gaps = 48/311 (15%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   +  E  ++F D+K RG+ P+ V YTT+IHG CR   +  A K++ EM   G LPN
Sbjct: 342 LCKGGKGPEGFRVFKDLKDRGYAPDRVMYTTMIHGLCRMKWLGDARKLWFEMIQKGFLPN 401

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             TY+ ++ G  +  ++E A       W+  +E                 +C +GY    
Sbjct: 402 EYTYNAMIHGYFKIGNLEEA-------WKMYRE-----------------MCDKGYGE-- 435

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
                     K+V+       MI  LC  G+   A  +   M  +G+  + ++YN++V G
Sbjct: 436 ----------KTVSYNV----MIKGLCSHGKIKEAHDLFEEMSHKGILRNHITYNALVRG 481

Query: 184 LCKHG----GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
            CK G    G    Y+LL++GIQ    PS  +Y  L++ LC E D++ A+ +   M ++ 
Sbjct: 482 FCKEGKIVEGANLLYELLDQGIQ----PSAASYAPLIDKLCQEGDMQNAKILWDDMQNRG 537

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                   +  +   C      E +  L  ML+++ +P   +  ++I    ++ R+++AL
Sbjct: 538 MEPAVCTHDFMITGFCKQGCAMEGMEWLTTMLRSKLRPQKKSFESLIQCLSQIDRLDDAL 597

Query: 300 KVLNDMVAGKF 310
            VL+ M+   F
Sbjct: 598 LVLDSMLKIGF 608



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 82/338 (24%), Positives = 136/338 (40%), Gaps = 11/338 (3%)

Query: 163 YVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGE 222
           ++  + G +P   S N +   L + G C  A   L+      + P   + +  +  LC  
Sbjct: 149 WLSSQSGFSPDSSSCNVLFDALVEAGACNAAKSFLDST---NFNPKPASLEAYIRCLCKG 205

Query: 223 SDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITL 282
             +E+A  V   +            N  LR          +  +   M+++    DV T+
Sbjct: 206 GLVEEAISVFGQLKGIGVCASIATWNSVLRGSVRAGRIDFVWELYGEMVESSVVADVHTV 265

Query: 283 NTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLN---VGRIQEALNLLY 339
             ++  FC   RI +   +L  ++      P    F  +I G       GR+ +    L 
Sbjct: 266 GYLVQAFCDENRISDGHNLLRRVLEDG-VVPRNAAFNKLISGFCKDKAYGRVSD----LL 320

Query: 340 QVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCES 399
             M  R  +P I TY  V+ GL +  +  E   VF  +   G   D   Y  +I GLC  
Sbjct: 321 HSMIARNRAPDIFTYQEVVNGLCKGGKGPEGFRVFKDLKDRGYAPDRVMYTTMIHGLCRM 380

Query: 400 NQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCY 459
             L +A++ W +++    + + Y Y AMI G  + G + EA     E+ D G     V Y
Sbjct: 381 KWLGDARKLWFEMIQKGFLPNEYTYNAMIHGYFKIGNLEEAWKMYREMCDKGYGEKTVSY 440

Query: 460 NVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           NV+I G C     +EA+ +  EM   G+  + +T+  L
Sbjct: 441 NVMIKGLCSHGKIKEAHDLFEEMSHKGILRNHITYNAL 478



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 129/298 (43%), Gaps = 5/298 (1%)

Query: 202 QFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPT 261
           Q G+ P   +  VL + L        A+    F+ S     +      Y+R LC      
Sbjct: 153 QSGFSPDSSSCNVLFDALVEAGACNAAK---SFLDSTNFNPKPASLEAYIRCLCKGGLVE 209

Query: 262 ELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTI 321
           E ++V   +        + T N+V+ G  + GRI+   ++  +MV     A D  T   +
Sbjct: 210 EAISVFGQLKGIGVCASIATWNSVLRGSVRAGRIDFVWELYGEMVESSVVA-DVHTVGYL 268

Query: 322 IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG 381
           +    +  RI +  NLL +V+ + G  P    +N ++ G  + +      ++ + M+   
Sbjct: 269 VQAFCDENRISDGHNLLRRVL-EDGVVPRNAAFNKLISGFCKDKAYGRVSDLLHSMIARN 327

Query: 382 VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAV 441
              D  TY  V++GLC+  +  E  R + D+       D  +Y  MI GLCR   + +A 
Sbjct: 328 RAPDIFTYQEVVNGLCKGGKGPEGFRVFKDLKDRGYAPDRVMYTTMIHGLCRMKWLGDAR 387

Query: 442 HFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
              +E++  G  PN   YN +I G  K+    EA+++ REM   G     V++ ++ K
Sbjct: 388 KLWFEMIQKGFLPNEYTYNAMIHGYFKIGNLEEAWKMYREMCDKGYGEKTVSYNVMIK 445


>gi|297724885|ref|NP_001174806.1| Os06g0499301 [Oryza sativa Japonica Group]
 gi|52076487|dbj|BAD45366.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|125597333|gb|EAZ37113.1| hypothetical protein OsJ_21452 [Oryza sativa Japonica Group]
 gi|255677074|dbj|BAH93534.1| Os06g0499301 [Oryza sativa Japonica Group]
          Length = 642

 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 127/454 (27%), Positives = 218/454 (48%), Gaps = 45/454 (9%)

Query: 62  PNSLTYSVLVRGV---LRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREG 118
           P  L++++L++ V   L  RD  R   +  ++   +    DL+ +   ++ +V +L   G
Sbjct: 164 PTLLSFNLLLKCVCSSLVPRDPGRYLDVALRILHEIIPGWDLAPDKFTYSTVVSALADAG 223

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
            V++   +  +M     V  E A   ++ ++ R+G   GA+++   M+ +G  P+  +YN
Sbjct: 224 RVDDAVALVHEMVADGVVAAE-AFNPVLRAMLRAGDVKGAAKLFGFMQLKGCVPTTATYN 282

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
            +VHGL   G    A  ++    + G +P   TY  +V+GL     ++ A KV + M   
Sbjct: 283 VLVHGLLVCGRAGAAMGVMRRMEREGVVPGVMTYGAVVDGLVRCGRVKDAWKVAEEM--- 339

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
              +R  +                  N  V+             +TVI GFCK G I+ A
Sbjct: 340 ---ERNGLA----------------WNEFVY-------------STVITGFCKSGEIDCA 367

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
           LKV   MVA     P+ V ++ +I GL N G++ EA  LL++ M     +P I+TY +++
Sbjct: 368 LKVWEAMVASPV-RPNVVLYSAMIGGLANFGKMTEA-ELLFREMIHSKCAPNIITYGSII 425

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
           +G F++     A  V+  M+G G V ++ +Y+I+I+GLC   +L +A   W  ++     
Sbjct: 426 QGYFKIGDTSRALSVWEEMIGAGCVPNAVSYSILINGLCNVGRLKDAMMVWKHMLDRGCA 485

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG-VTPNIVCYNVVIDGACKLSMKREAYQ 477
            D   Y +MIKGLC SG +   +   Y+++ SG   P+++ YNV++DG         A  
Sbjct: 486 PDTIAYTSMIKGLCVSGMVDGGLRLFYDMLASGHADPDVISYNVLLDGLLLAKDLPRAMD 545

Query: 478 ILREMRKNGLNPDAVTWRILDKLHG---NRGNDF 508
           +L  M   G +PD VT  I  +  G    +G +F
Sbjct: 546 LLNRMLDQGCDPDTVTCNIFLREFGAGERKGREF 579



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 118/434 (27%), Positives = 195/434 (44%), Gaps = 26/434 (5%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +  L    RV +A  L  +M + G V    ++  ++    R G++  A K+F  M+  G 
Sbjct: 216 VSALADAGRVDDAVALVHEMVADGVV-AAEAFNPVLRAMLRAGDVKGAAKLFGFMQLKGC 274

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P + TY+VLV G+L      RA   M  +  R  E E +      +  +VD L R G V
Sbjct: 275 VPTTATYNVLVHGLLVC---GRAGAAMGVM--RRMEREGVVPGVMTYGAVVDGLVRCGRV 329

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            + +++AE+M +      EF    +I   C+SG    A +V   M    + P++V Y+++
Sbjct: 330 KDAWKVAEEMERNGLAWNEFVYSTVITGFCKSGEIDCALKVWEAMVASPVRPNVVLYSAM 389

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GL   G    A  L  E I     P+  TY  +++G     D  +A  V + M+    
Sbjct: 390 IGGLANFGKMTEAELLFREMIHSKCAPNIITYGSIIQGYFKIGDTSRALSVWEEMIGAGC 449

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           V      +I +  LC +    + + V   ML   C PD I   ++I G C  G ++  L+
Sbjct: 450 VPNAVSYSILINGLCNVGRLKDAMMVWKHMLDRGCAPDTIAYTSMIKGLCVSGMVDGGLR 509

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR- 359
           +  DM+A     PD +++  ++ GLL    +  A++LL +++ Q G  P  VT N  LR 
Sbjct: 510 LFYDMLASGHADPDVISYNVLLDGLLLAKDLPRAMDLLNRMLDQ-GCDPDTVTCNIFLRE 568

Query: 360 -------------GL-FRL---RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQL 402
                        GL  RL   RR   A EV   ML   +V ++  + +V+  +C   ++
Sbjct: 569 FGAGERKGREFLEGLVVRLCDRRRNMAAGEVLMVMLAKYIVPEAPIWEMVVRDVCRRKRV 628

Query: 403 DEA-KRFWDDIVWP 415
                + WD+I  P
Sbjct: 629 WRVIDKCWDEIWGP 642


>gi|356561716|ref|XP_003549125.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62930,
           chloroplastic-like [Glycine max]
          Length = 556

 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 116/497 (23%), Positives = 231/497 (46%), Gaps = 42/497 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +  L  + R   A  L   +  +G   ++V+   LI+ +C  G++ +++ V   +   G 
Sbjct: 76  LSSLVKMQRFPTAISLSKHLDFKGITSDLVTLNILINCFCHLGQITLSFSVLATILKRGY 135

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +T + L++G+    +V++A     K  + +   E   ++  ++  L++ LC+ G  
Sbjct: 136 HPDVITLTTLIKGLCLRGEVKKA----LKFHDDVVALE-FQLDRISYGTLINGLCKIGET 190

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
               ++  ++ +     +      +IDSLC++     A  +   M  + + P++V+Y ++
Sbjct: 191 KAAIQLMRNLEERSIKPDVVMYNIIIDSLCKNKLVGEACNLYSEMNAKQIYPNVVTYTTL 250

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++G C  G  + A  LL E       P  +T+ +L++ L  E  ++ A+ VL        
Sbjct: 251 IYGFCIMGCLIEAVALLNEMKLKNINPDVYTFSILIDALGKEGKMKAAKIVL-------- 302

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                        M++   +PDV+T N++++G+  +  ++ A  
Sbjct: 303 ---------------------------AVMMKAYVKPDVVTYNSLVDGYFLVNEVKHAKY 335

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           V N M A     P   ++T +I GL     + EA++L ++ M  +   P  +T+N+++ G
Sbjct: 336 VFNSM-AQSGVTPGVQSYTIMIDGLCKTKMVDEAISL-FEEMKHKNVIPNTITFNSLIDG 393

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L +  R+    ++ + M     +AD  TY+ +ID LC++  LD+A   +  ++      D
Sbjct: 394 LCKSGRIAYVWDLVDKMRDRSQLADVITYSSLIDALCKNCHLDQAIALFKKMITQEIQPD 453

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
            Y Y  +I GLC+ G++  A      L+  G   +I  Y V+I G CK  +  EA  +L 
Sbjct: 454 MYTYTILIDGLCKGGRLKIAQEVFQHLLIKGYHLDIRTYTVMISGFCKAGLFDEALALLS 513

Query: 481 EMRKNGLNPDAVTWRIL 497
           +M  NG  P+A+T+ I+
Sbjct: 514 KMEDNGCIPNAITFDII 530



 Score =  168 bits (426), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 105/391 (26%), Positives = 197/391 (50%), Gaps = 2/391 (0%)

Query: 107 FANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMR 166
           F N++ SL +         +++ +      ++      +I+  C  G+   +  V+  + 
Sbjct: 72  FNNILSSLVKMQRFPTAISLSKHLDFKGITSDLVTLNILINCFCHLGQITLSFSVLATIL 131

Query: 167 KRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLE 226
           KRG  P +++  +++ GLC  G   +A +  ++ +   +     +Y  L+ GLC   + +
Sbjct: 132 KRGYHPDVITLTTLIKGLCLRGEVKKALKFHDDVVALEFQLDRISYGTLINGLCKIGETK 191

Query: 227 KARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVI 286
            A ++++ +  +       + NI + +LC  K   E  N+   M   Q  P+V+T  T+I
Sbjct: 192 AAIQLMRNLEERSIKPDVVMYNIIIDSLCKNKLVGEACNLYSEMNAKQIYPNVVTYTTLI 251

Query: 287 NGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
            GFC MG + EA+ +LN+M   K   PD  TF+ +I  L   G+++ A  ++  VM +  
Sbjct: 252 YGFCIMGCLIEAVALLNEM-KLKNINPDVYTFSILIDALGKEGKMKAA-KIVLAVMMKAY 309

Query: 347 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
             P +VTYN+++ G F +  V+ AK VFN M   GV     +Y I+IDGLC++  +DEA 
Sbjct: 310 VKPDVVTYNSLVDGYFLVNEVKHAKYVFNSMAQSGVTPGVQSYTIMIDGLCKTKMVDEAI 369

Query: 407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466
             ++++   + I +   + ++I GLC+SG+I      + ++ D     +++ Y+ +ID  
Sbjct: 370 SLFEEMKHKNVIPNTITFNSLIDGLCKSGRIAYVWDLVDKMRDRSQLADVITYSSLIDAL 429

Query: 467 CKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           CK     +A  + ++M    + PD  T+ IL
Sbjct: 430 CKNCHLDQAIALFKKMITQEIQPDMYTYTIL 460



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 114/236 (48%), Gaps = 2/236 (0%)

Query: 270 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG 329
           ML  +  P     N +++   KM R   A+  L+  +  K    D VT   +I    ++G
Sbjct: 60  MLLMRPPPPTFQFNNILSSLVKMQRFPTAIS-LSKHLDFKGITSDLVTLNILINCFCHLG 118

Query: 330 RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTY 389
           +I  + ++L  ++ +RGY P ++T   +++GL     V++A +  + ++ +    D  +Y
Sbjct: 119 QITLSFSVLATIL-KRGYHPDVITLTTLIKGLCLRGEVKKALKFHDDVVALEFQLDRISY 177

Query: 390 AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449
             +I+GLC+  +   A +   ++   S   D  +Y  +I  LC++  + EA +   E+  
Sbjct: 178 GTLINGLCKIGETKAAIQLMRNLEERSIKPDVVMYNIIIDSLCKNKLVGEACNLYSEMNA 237

Query: 450 SGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
             + PN+V Y  +I G C +    EA  +L EM+   +NPD  T+ IL    G  G
Sbjct: 238 KQIYPNVVTYTTLIYGFCIMGCLIEAVALLNEMKLKNINPDVYTFSILIDALGKEG 293


>gi|218184541|gb|EEC66968.1| hypothetical protein OsI_33625 [Oryza sativa Indica Group]
          Length = 1351

 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 135/527 (25%), Positives = 249/527 (47%), Gaps = 46/527 (8%)

Query: 8    SRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTY 67
            S+  EA K+F+DM     VP+V+   +LI    + G  D A+++F +++   + P   TY
Sbjct: 568  SKFDEAVKIFYDMIENNCVPDVLVVNSLIDTLYKAGRGDEAWQIFYQLKEMNLEPTDGTY 627

Query: 68   SVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIA 127
            + L+ G+ R   V+    L+ +++       +   N   +  ++D LC+ G VN+   + 
Sbjct: 628  NTLLAGLGREGKVKEVMHLLEEMYH-----SNYPPNLITYNTILDCLCKNGAVNDALDML 682

Query: 128  EDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKH 187
              M     + +  +   +I  L +  R + A  +   M+K  L P   +  +I+    K 
Sbjct: 683  YSMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQMKKV-LIPDYATLCTILPSFVKI 741

Query: 188  GGCMRAYQLLEE-GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK-DVDRTR 245
            G    A  +++E  +Q G      +   L+EG+  ++  EK+ +  + + S    +D   
Sbjct: 742  GLMKEALHIIKEYFLQPGSKTDRSSCHSLMEGILKKAGTEKSIEFAEIIASSGITLDDFF 801

Query: 246  ICNIYLRALCLIKNPTE-------------------------------LLNV----LVFM 270
            +C + ++ LC  K   E                               L+++       M
Sbjct: 802  LCPL-IKHLCKQKKALEAHELVKKFKSFGVSLKTGSYNSLICGLVDENLIDIAEGLFAEM 860

Query: 271  LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR 330
             +  C PD  T N +++   K  RIEE LKV  +M    +     VT+ TII GL+   R
Sbjct: 861  KELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKGY-ESTYVTYNTIISGLVKSRR 919

Query: 331  IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYA 390
            +++A++L Y +M Q G+SP   TY  +L GL +  R+E+A+ +FN ML  G  A+ T Y 
Sbjct: 920  LEQAIDLYYNLMSQ-GFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYN 978

Query: 391  IVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 450
            I+++G   +   ++    + D+V      D   Y  +I  LC++G++++ + +  +L++ 
Sbjct: 979  ILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEM 1038

Query: 451  GVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            G+ P+++ YN++IDG  K     EA  +  EM+K G+ P+  T+  L
Sbjct: 1039 GLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSL 1085



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 124/531 (23%), Positives = 233/531 (43%), Gaps = 45/531 (8%)

Query: 4    LCGLSRVG---EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
            L GL R G   E   L  +M    + PN+++Y T++   C+ G ++ A  +   M   G 
Sbjct: 631  LAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGC 690

Query: 61   LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            +P+  +Y+ ++ G+++      A    F ++ +MK+   L  + A    ++ S  + G +
Sbjct: 691  IPDLSSYNTVIYGLVKEERYNEA----FSIFCQMKKV--LIPDYATLCTILPSFVKIGLM 744

Query: 121  NEVFRI-AEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
             E   I  E   Q  S  +  +C  +++ + +      +     ++   G+T        
Sbjct: 745  KEALHIIKEYFLQPGSKTDRSSCHSLMEGILKKAGTEKSIEFAEIIASSGITLDDFFLCP 804

Query: 180  IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
            ++  LCK    + A++L+++   FG      +Y  L+ GL  E+ ++ A  +   M    
Sbjct: 805  LIKHLCKQKKALEAHELVKKFKSFGVSLKTGSYNSLICGLVDENLIDIAEGLFAEMKELG 864

Query: 240  DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                    N+ L A+       E+L V   M +   +   +T NT+I+G  K  R+E+A+
Sbjct: 865  CGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAI 924

Query: 300  KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNL---------------------- 337
             +  ++++  F +P   T+  ++ GLL  GRI++A NL                      
Sbjct: 925  DLYYNLMSQGF-SPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNG 983

Query: 338  ------------LYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 385
                        L+Q M  +G +P I +Y  ++  L +  ++ +    F  +L +G+  D
Sbjct: 984  HRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPD 1043

Query: 386  STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY 445
              TY ++IDGL +S +L+EA   ++++     + + Y Y ++I  L ++GK  EA     
Sbjct: 1044 LITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYE 1103

Query: 446  ELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRI 496
            EL+  G  PN+  YN +I G         AY     M   G  P++ T  I
Sbjct: 1104 ELLTKGWKPNVFTYNALIRGYSVSGSTDSAYAAYGRMIVGGCLPNSSTCHI 1154



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 112/487 (22%), Positives = 224/487 (45%), Gaps = 18/487 (3%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           EA +++  M   G VP+V +Y+ L+  + +  +++    +  EM   GV PN  +Y++ +
Sbjct: 257 EALEVYKVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTICI 316

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP 131
           R + + R  + A  ++ ++     E E    +      L+  LC  G +++   +   M 
Sbjct: 317 RVLGQARRFDEAYRILAEM-----ENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMK 371

Query: 132 QGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCM 191
           +     +      ++D    +G +     +   M+  G   ++V+Y +++  LC+ G   
Sbjct: 372 KSDQKPDRVTYITLLDKFADNGESQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVF 431

Query: 192 RAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM--LSKKDVDRTRI--C 247
            A ++ +E  Q G +P +++Y  L+ G         A ++ ++M     K    T +   
Sbjct: 432 EALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKYMDIHGPKPNGYTHVLFI 491

Query: 248 NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA 307
           N Y ++   IK     +     M      PDV+  N V+ G  K GR+  A +V +++ A
Sbjct: 492 NYYGKSGESIK----AIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKA 547

Query: 308 GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRV 367
               +PD +T+T +I       +  EA+ + Y  M +    P ++  N+++  L++  R 
Sbjct: 548 MGV-SPDTITYTMMIKCCSKASKFDEAVKIFYD-MIENNCVPDVLVVNSLIDTLYKAGRG 605

Query: 368 EEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV-YAA 426
           +EA ++F  +  + +     TY  ++ GL    ++ E     +++ + SN   N + Y  
Sbjct: 606 DEAWQIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEM-YHSNYPPNLITYNT 664

Query: 427 MIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG 486
           ++  LC++G +++A+  LY +   G  P++  YN VI G  K     EA+ I  +M+K  
Sbjct: 665 ILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQMKKV- 723

Query: 487 LNPDAVT 493
           L PD  T
Sbjct: 724 LIPDYAT 730



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 124/570 (21%), Positives = 239/570 (41%), Gaps = 65/570 (11%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC + RV EA ++F +MK +G VP   SY +LI G+ +      A ++F  M   G 
Sbjct: 421 IDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKYMDIHGP 480

Query: 61  LPNSLTYSVLV----------RGVLR---------TRDVERANVLMFKLWERMK------ 95
            PN  T+ + +          + + R           DV   N ++F L +  +      
Sbjct: 481 KPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKR 540

Query: 96  -----EEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC 150
                +   +S +   +  ++    +    +E  +I  DM +   V +      +ID+L 
Sbjct: 541 VFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLVVNSLIDTLY 600

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
           ++GR   A ++ Y +++  L P+  +YN+++ GL + G       LLEE     Y P+  
Sbjct: 601 KAGRGDEAWQIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLI 660

Query: 211 TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM 270
           TY  +++ LC    +  A  +L  M +K  +      N  +  L   +   E  ++   M
Sbjct: 661 TYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQM 720

Query: 271 LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR 330
            +    PD  TL T++  F K+G ++EAL ++ +         D  +  +++ G+L    
Sbjct: 721 KKVLI-PDYATLCTILPSFVKIGLMKEALHIIKEYFLQPGSKTDRSSCHSLMEGILKKAG 779

Query: 331 IQEALN-------------------LLYQVMPQR---------------GYSPGIVTYNA 356
            ++++                    L+  +  Q+               G S    +YN+
Sbjct: 780 TEKSIEFAEIIASSGITLDDFFLCPLIKHLCKQKKALEAHELVKKFKSFGVSLKTGSYNS 839

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416
           ++ GL     ++ A+ +F  M  +G   D  TY +++D + +S +++E  +  +++    
Sbjct: 840 LICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKG 899

Query: 417 NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAY 476
                  Y  +I GL +S ++ +A+   Y L+  G +P    Y  ++DG  K     +A 
Sbjct: 900 YESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAE 959

Query: 477 QILREMRKNGLNPDAVTWRILDKLHGNRGN 506
            +  EM + G   +   + IL   H   GN
Sbjct: 960 NLFNEMLEYGCKANCTIYNILLNGHRIAGN 989



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 121/512 (23%), Positives = 212/512 (41%), Gaps = 81/512 (15%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           MK  G V N  +Y  L++   ++G    A +V+  M   GV+P+  TYSVL+    + RD
Sbjct: 230 MKEAGIVLNAYTYNGLVYFLVKSGFDREALEVYKVMMVDGVVPSVRTYSVLMVAFGKRRD 289

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
           VE        LW  ++E E   V    ++    ++C                        
Sbjct: 290 VETV------LW-LLREMEAHGVKPNVYSY---TIC------------------------ 315

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
                 I  L ++ R   A R++  M   G  P ++++  ++  LC  G    A  +  +
Sbjct: 316 ------IRVLGQARRFDEAYRILAEMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWK 369

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
             +    P   TY  L++      + +   ++   M +    D        + ALC +  
Sbjct: 370 MKKSDQKPDRVTYITLLDKFADNGESQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGR 429

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
             E L +   M Q    P+  + N++I+GF K  R  +AL++   M       P    +T
Sbjct: 430 VFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKYM---DIHGPKPNGYT 486

Query: 320 TIIFGLLNVGRIQEALNLL--YQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCM 377
            ++F +   G+  E++  +  Y++M  +G  P +V  NAVL GL +  R+  AK VF+ +
Sbjct: 487 HVLF-INYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHEL 545

Query: 378 LGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV-------------- 423
             +GV  D+ TY ++I    ++++ DEA + + D++  + + D  V              
Sbjct: 546 KAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLVVNSLIDTLYKAGRG 605

Query: 424 ---------------------YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVV 462
                                Y  ++ GL R GK+ E +H L E+  S   PN++ YN +
Sbjct: 606 DEAWQIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTI 665

Query: 463 IDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
           +D  CK     +A  +L  M   G  PD  ++
Sbjct: 666 LDCLCKNGAVNDALDMLYSMTTKGCIPDLSSY 697



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 94/385 (24%), Positives = 160/385 (41%), Gaps = 41/385 (10%)

Query: 122 EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
           E FR A   P  + V+   +C +M+D +   GR    + V  VM+++ +  ++ ++ +I 
Sbjct: 154 ERFRSAARRP--RVVHTTASCNYMLDLMRDHGRVGDMAEVFDVMQRQIVKANVGTFAAIF 211

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
            GL   GG   A   L    + G + + +TY  LV                 + L K   
Sbjct: 212 GGLGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLV-----------------YFLVKSGF 254

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
           DR                  E L V   M+     P V T + ++  F K   +E  L +
Sbjct: 255 DR------------------EALEVYKVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWL 296

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
           L +M A     P+  ++T  I  L    R  EA  +L + M   G  P ++T+  +++ L
Sbjct: 297 LREMEAHGV-KPNVYSYTICIRVLGQARRFDEAYRILAE-MENEGCKPDVITHTVLIQVL 354

Query: 362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
               R+ +AK+VF  M       D  TY  ++D   ++ +       W+  +     +DN
Sbjct: 355 CDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFADNGESQSVMEIWN-AMKADGYNDN 413

Query: 422 YV-YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
            V Y A+I  LC+ G++ EA+    E+   G+ P    YN +I G  K     +A ++ +
Sbjct: 414 VVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFK 473

Query: 481 EMRKNGLNPDAVTWRILDKLHGNRG 505
            M  +G  P+  T  +    +G  G
Sbjct: 474 YMDIHGPKPNGYTHVLFINYYGKSG 498



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 59/266 (22%), Positives = 126/266 (47%), Gaps = 5/266 (1%)

Query: 9    RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
            R+ +A  L++++ S+G  P   +Y  L+ G  + G ++ A  +F+EM   G   N   Y+
Sbjct: 919  RLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYN 978

Query: 69   VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
            +L+ G     + E+    +  L++ M ++  ++ +  ++  ++D+LC+ G +N+      
Sbjct: 979  ILLNGHRIAGNTEK----VCHLFQDMVDQ-GINPDIKSYTIIIDTLCKAGQLNDGLTYFR 1033

Query: 129  DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
             + +     +      +ID L +S R   A  +   M+K+G+ P+L +YNS++  L K G
Sbjct: 1034 QLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAG 1093

Query: 189  GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
                A ++ EE +  G+ P+  TY  L+ G       + A      M+    +  +  C+
Sbjct: 1094 KAAEAGKMYEELLTKGWKPNVFTYNALIRGYSVSGSTDSAYAAYGRMIVGGCLPNSSTCH 1153

Query: 249  IYLRALCLIKNPTELLNVLVFMLQTQ 274
            I+      +K  ++   ++V  +  +
Sbjct: 1154 IHELMKTFLKGDSDSYEIIVTFINAE 1179


>gi|297807691|ref|XP_002871729.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317566|gb|EFH47988.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 504

 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 107/393 (27%), Positives = 193/393 (49%), Gaps = 37/393 (9%)

Query: 105 AAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYV 164
           A F+ L+ ++ +    + V  + E M      +    C  +++  CR  +   A   +  
Sbjct: 82  ADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSFLGK 141

Query: 165 MRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESD 224
           M K G  P +V++ S+++G C+      A  + +  ++ GY P+   Y  +++GLC    
Sbjct: 142 MMKLGHEPDIVTFGSLLNGFCRGDRIYDALYMFDRMVEMGYEPNVVIYNTIIDGLCKSKQ 201

Query: 225 LEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNT 284
           ++ A  +L  M    +VD  R                               PD +T N+
Sbjct: 202 VDNALDLLNRM----EVDGIR-------------------------------PDAVTYNS 226

Query: 285 VINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ 344
           +I+G C  GR ++A ++++ M   +   PD  TF  +I   +  GRI EA  L Y+ M +
Sbjct: 227 LISGLCNSGRWDDATRMVSCMTKREI-YPDVFTFNALIDACVKEGRISEAEEL-YEEMIR 284

Query: 345 RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 404
           R   P IVTY+ ++ GL    R++EA+++F  M+  G   D  TY+I+I+G C+S +++ 
Sbjct: 285 RSLDPDIVTYSLLIYGLCMYSRLDEAEQMFGFMVSKGCFPDVVTYSILINGYCKSKKVEH 344

Query: 405 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
             + + ++     + +   Y  +I+G CR+GK++ A      +V  GV PNI+ YNV++ 
Sbjct: 345 GMKLFCEMSQRGVVRNTVTYTVLIQGYCRAGKLNVAEEIFKWMVFCGVPPNIITYNVLLH 404

Query: 465 GACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           G C      +A  IL +M+K+G++ D VT+ I+
Sbjct: 405 GLCDNGKIEKALVILADMQKSGMDADIVTYNII 437



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 116/459 (25%), Positives = 221/459 (48%), Gaps = 7/459 (1%)

Query: 32  YTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLW 91
           Y  ++    R  ++D +  +F  M  C  LP+   +S L+  + + +   + +V+++ LW
Sbjct: 49  YREMLRNGIRYMKLDDSLDLFFHMVQCRPLPSIADFSRLLSAISKMK---KYDVVIY-LW 104

Query: 92  ERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCR 151
           E+M +   +  N      L++  CR   ++        M +     +    G +++  CR
Sbjct: 105 EQM-QMLGIPHNLCTCNILLNCFCRCSQLSLALSFLGKMMKLGHEPDIVTFGSLLNGFCR 163

Query: 152 SGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHT 211
             R + A  +   M + G  P++V YN+I+ GLCK      A  LL      G  P   T
Sbjct: 164 GDRIYDALYMFDRMVEMGYEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVT 223

Query: 212 YKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFML 271
           Y  L+ GLC     + A +++  M  ++        N  + A       +E   +   M+
Sbjct: 224 YNSLISGLCNSGRWDDATRMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEEMI 283

Query: 272 QTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRI 331
           +    PD++T + +I G C   R++EA ++   MV+ K C PD VT++ +I G     ++
Sbjct: 284 RRSLDPDIVTYSLLIYGLCMYSRLDEAEQMFGFMVS-KGCFPDVVTYSILINGYCKSKKV 342

Query: 332 QEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAI 391
           +  + L  + M QRG     VTY  +++G  R  ++  A+E+F  M+  GV  +  TY +
Sbjct: 343 EHGMKLFCE-MSQRGVVRNTVTYTVLIQGYCRAGKLNVAEEIFKWMVFCGVPPNIITYNV 401

Query: 392 VIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 451
           ++ GLC++ ++++A     D+       D   Y  +I+G+C++G++ +A      L   G
Sbjct: 402 LLHGLCDNGKIEKALVILADMQKSGMDADIVTYNIIIRGMCKAGEVADAWDLYCSLNLKG 461

Query: 452 VTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD 490
           +TP+I  Y  ++ G  K  ++ EA  + R+M+++G+ P+
Sbjct: 462 LTPDIWTYTAMMLGLYKKGLRGEADALFRKMKEDGILPN 500



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 102/382 (26%), Positives = 184/382 (48%), Gaps = 7/382 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C  S++  A      M   GH P++V++ +L++G+CR   +  A  +FD M   G  PN
Sbjct: 126 FCRCSQLSLALSFLGKMMKLGHEPDIVTFGSLLNGFCRGDRIYDALYMFDRMVEMGYEPN 185

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            + Y+ ++ G+ +++ V+ A      L  RM E + +  +   + +L+  LC  G  ++ 
Sbjct: 186 VVIYNTIIDGLCKSKQVDNA----LDLLNRM-EVDGIRPDAVTYNSLISGLCNSGRWDDA 240

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            R+   M + +   + F    +ID+  + GR   A  +   M +R L P +V+Y+ +++G
Sbjct: 241 TRMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEEMIRRSLDPDIVTYSLLIYG 300

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LC +     A Q+    +  G  P   TY +L+ G C    +E   K+   M  +  V  
Sbjct: 301 LCMYSRLDEAEQMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRN 360

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
           T    + ++  C          +  +M+     P++IT N +++G C  G+IE+AL +L 
Sbjct: 361 TVTYTVLIQGYCRAGKLNVAEEIFKWMVFCGVPPNIITYNVLLHGLCDNGKIEKALVILA 420

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           DM      A D VT+  II G+   G + +A + LY  +  +G +P I TY A++ GL++
Sbjct: 421 DMQKSGMDA-DIVTYNIIIRGMCKAGEVADAWD-LYCSLNLKGLTPDIWTYTAMMLGLYK 478

Query: 364 LRRVEEAKEVFNCMLGIGVVAD 385
                EA  +F  M   G++ +
Sbjct: 479 KGLRGEADALFRKMKEDGILPN 500



 Score =  157 bits (398), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 109/451 (24%), Positives = 215/451 (47%), Gaps = 8/451 (1%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           ++ ++  LFF M     +P++  ++ L+    +  + DV   ++++M+  G+  N  T +
Sbjct: 61  KLDDSLDLFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCN 120

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
           +L+    R   +  A   + K+  ++  E D+      F +L++  CR   + +   + +
Sbjct: 121 ILLNCFCRCSQLSLALSFLGKMM-KLGHEPDI----VTFGSLLNGFCRGDRIYDALYMFD 175

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
            M +            +ID LC+S +   A  ++  M   G+ P  V+YNS++ GLC  G
Sbjct: 176 RMVEMGYEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYNSLISGLCNSG 235

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
               A +++    +    P   T+  L++    E  + +A ++ + M+ +         +
Sbjct: 236 RWDDATRMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEEMIRRSLDPDIVTYS 295

Query: 249 IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 308
           + +  LC+     E   +  FM+   C PDV+T + +ING+CK  ++E  +K+  +M + 
Sbjct: 296 LLIYGLCMYSRLDEAEQMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEM-SQ 354

Query: 309 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE 368
           +    + VT+T +I G    G++  A   +++ M   G  P I+TYN +L GL    ++E
Sbjct: 355 RGVVRNTVTYTVLIQGYCRAGKLNVA-EEIFKWMVFCGVPPNIITYNVLLHGLCDNGKIE 413

Query: 369 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI 428
           +A  +   M   G+ AD  TY I+I G+C++ ++ +A   +  +       D + Y AM+
Sbjct: 414 KALVILADMQKSGMDADIVTYNIIIRGMCKAGEVADAWDLYCSLNLKGLTPDIWTYTAMM 473

Query: 429 KGLCRSGKIHEAVHFLYELVDSGVTPNIVCY 459
            GL + G   EA     ++ + G+ PN  CY
Sbjct: 474 LGLYKKGLRGEADALFRKMKEDGILPN-ECY 503



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 63/206 (30%), Positives = 107/206 (51%), Gaps = 5/206 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC  SR+ EA ++F  M S+G  P+VV+Y+ LI+GYC++ +++   K+F EM   GV+ N
Sbjct: 301 LCMYSRLDEAEQMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRN 360

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           ++TY+VL++G  R   +  A  + FK W        +  N   +  L+  LC  G + + 
Sbjct: 361 TVTYTVLIQGYCRAGKLNVAEEI-FK-WMVFC---GVPPNIITYNVLLHGLCDNGKIEKA 415

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             I  DM +     +      +I  +C++G    A  +   +  +GLTP + +Y +++ G
Sbjct: 416 LVILADMQKSGMDADIVTYNIIIRGMCKAGEVADAWDLYCSLNLKGLTPDIWTYTAMMLG 475

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSE 209
           L K G    A  L  +  + G LP+E
Sbjct: 476 LYKKGLRGEADALFRKMKEDGILPNE 501



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 89/168 (52%), Gaps = 1/168 (0%)

Query: 330 RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTY 389
           ++ ++L+L + ++  R   P I  ++ +L  + ++++ +    ++  M  +G+  +  T 
Sbjct: 61  KLDDSLDLFFHMVQCRPL-PSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTC 119

Query: 390 AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449
            I+++  C  +QL  A  F   ++   +  D   + +++ G CR  +I++A++    +V+
Sbjct: 120 NILLNCFCRCSQLSLALSFLGKMMKLGHEPDIVTFGSLLNGFCRGDRIYDALYMFDRMVE 179

Query: 450 SGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            G  PN+V YN +IDG CK      A  +L  M  +G+ PDAVT+  L
Sbjct: 180 MGYEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYNSL 227



 Score = 46.6 bits (109), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 34/170 (20%), Positives = 78/170 (45%), Gaps = 2/170 (1%)

Query: 344 QRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLD 403
           +R YS G   Y  +LR   R  +++++ ++F  M+    +     ++ ++  + +  + D
Sbjct: 40  RRAYSGG-SDYREMLRNGIRYMKLDDSLDLFFHMVQCRPLPSIADFSRLLSAISKMKKYD 98

Query: 404 EAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463
                W+ +      H+      ++   CR  ++  A+ FL +++  G  P+IV +  ++
Sbjct: 99  VVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSFLGKMMKLGHEPDIVTFGSLL 158

Query: 464 DGACKLSMKREAYQILREMRKNGLNPDAVTWR-ILDKLHGNRGNDFGLRI 512
           +G C+     +A  +   M + G  P+ V +  I+D L  ++  D  L +
Sbjct: 159 NGFCRGDRIYDALYMFDRMVEMGYEPNVVIYNTIIDGLCKSKQVDNALDL 208


>gi|449489553|ref|XP_004158346.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g55840-like [Cucumis sativus]
          Length = 1079

 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 134/510 (26%), Positives = 240/510 (47%), Gaps = 43/510 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC  SR  + + +   M+++   PN VSY TLI+G+ + G++ VA +VF+EM    +
Sbjct: 252 IDSLCRNSRSAQGYLVLKKMRNKMITPNEVSYNTLINGFVKEGKIGVATRVFNEMIELNL 311

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +TY++L+ G     + E A     +L + M E  D+  N      L++ L    Y 
Sbjct: 312 SPNLITYNILINGYCINGNFEEA----LRLLDVM-EANDVRPNEVTIGTLLNGL----YK 362

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +  F +A ++ +  S+N             R+  N                   +S+  +
Sbjct: 363 SAKFDVARNILERYSIN-------------RTSLN------------------CISHTVM 391

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GLC++G    A+QLL E  + G  P   T+ VL+ G C   +L KA++V+  +  +  
Sbjct: 392 IDGLCRNGLLDEAFQLLIEMCKDGVYPDIITFSVLINGFCKVGNLNKAKEVMSKIYREGF 451

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           V    I +  +   C + N  E +     M       D  T N+++   C+ G++ EA +
Sbjct: 452 VPNNVIFSTLIYNSCKVGNVYEGMKFYAAMNLNGQNADNFTCNSLVASLCENGKLVEAEE 511

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
            L+  ++     P++VTF  II G  NVG    A ++ +  M   G+ P   TY ++L+ 
Sbjct: 512 FLHH-ISRIGLVPNSVTFDCIINGYANVGDGSGAFSV-FDKMISCGHHPSPFTYGSLLKV 569

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L + +   EA+++   +  I +  D+ +Y  +I  + +S  L EA R +++++  + + D
Sbjct: 570 LCKGQNFWEARKLLKKLHCIPLAVDTISYNTLIVEISKSGNLLEAVRLFEEMIQNNILPD 629

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGV-TPNIVCYNVVIDGACKLSMKREAYQIL 479
           +Y Y  ++ GL R G++  A  FL  L+   + T N + Y   IDG  K    + A  + 
Sbjct: 630 SYTYTCILSGLIREGRLVCAFIFLGRLMQKEILTLNSIVYTCFIDGLFKAGQSKAALYLF 689

Query: 480 REMRKNGLNPDAVTWRILDKLHGNRGNDFG 509
           +EM + GL+ D +    +   +   G  F 
Sbjct: 690 KEMEEKGLSLDLIALNSITDGYSRMGKVFS 719



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 107/443 (24%), Positives = 212/443 (47%), Gaps = 6/443 (1%)

Query: 28  NVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLM 87
           N +S+T +I G CR G +D A+++  EM   GV P+ +T+SVL+ G  +  ++ +A  +M
Sbjct: 384 NCISHTVMIDGLCRNGLLDEAFQLLIEMCKDGVYPDIITFSVLINGFCKVGNLNKAKEVM 443

Query: 88  FKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMID 147
            K++      E    NN  F+ L+ + C+ G V E  +    M       + F C  ++ 
Sbjct: 444 SKIYR-----EGFVPNNVIFSTLIYNSCKVGNVYEGMKFYAAMNLNGQNADNFTCNSLVA 498

Query: 148 SLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLP 207
           SLC +G+   A   ++ + + GL P+ V+++ I++G    G    A+ + ++ I  G+ P
Sbjct: 499 SLCENGKLVEAEEFLHHISRIGLVPNSVTFDCIINGYANVGDGSGAFSVFDKMISCGHHP 558

Query: 208 SEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVL 267
           S  TY  L++ LC   +  +ARK+L+ +        T   N  +  +    N  E + + 
Sbjct: 559 SPFTYGSLLKVLCKGQNFWEARKLLKKLHCIPLAVDTISYNTLIVEISKSGNLLEAVRLF 618

Query: 268 VFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLN 327
             M+Q    PD  T   +++G  + GR+  A   L  ++  +    +++ +T  I GL  
Sbjct: 619 EEMIQNNILPDSYTYTCILSGLIREGRLVCAFIFLGRLMQKEILTLNSIVYTCFIDGLFK 678

Query: 328 VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADST 387
            G+ + AL  L++ M ++G S  ++  N++  G  R+ +V  A  + +      V+ + T
Sbjct: 679 AGQSKAAL-YLFKEMEEKGLSLDLIALNSITDGYSRMGKVFSASSLISKTRNKNVIPNLT 737

Query: 388 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYEL 447
           T+ I++ G      +    + ++ +       +   Y ++I GLC  G +   +  L   
Sbjct: 738 TFNILLHGYSRGQDIMSCFKLYNLMRRSGFFPNRLTYHSLILGLCNHGMLELGIKMLKMF 797

Query: 448 VDSGVTPNIVCYNVVIDGACKLS 470
           +    T + + +N++I   C+++
Sbjct: 798 IAESSTIDDLTFNMLIRKCCEIN 820



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 127/522 (24%), Positives = 234/522 (44%), Gaps = 46/522 (8%)

Query: 10  VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSV 69
           VG A   F  M  RG  P+V +   ++    +     + +  F +M    V PN  ++++
Sbjct: 121 VGHAVNTFSSMLIRGFKPSVYTCNMIMASMVKNCRAHLVWXFFKQMLTSRVCPNVSSFNI 180

Query: 70  LVRGVLRTRDVERA-NVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
           L+  +     +++A N+L       M E         ++  L+   C++G       +  
Sbjct: 181 LISVLCVQGKLKKAVNIL------TMMERNGYVPTIVSYNTLLSWCCKKGRFKFALVLIH 234

Query: 129 DMPQGKSVNEEFACGHM-IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKH 187
            M + K +  +    +M IDSLCR+ R+     V+  MR + +TP+ VSYN++++G  K 
Sbjct: 235 HM-ECKGIQADVCTYNMFIDSLCRNSRSAQGYLVLKKMRNKMITPNEVSYNTLINGFVKE 293

Query: 188 GGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM------------ 235
           G    A ++  E I+    P+  TY +L+ G C   + E+A ++L  M            
Sbjct: 294 GKIGVATRVFNEMIELNLSPNLITYNILINGYCINGNFEEALRLLDVMEANDVRPNEVTI 353

Query: 236 -------------------LSKKDVDRTRI-C---NIYLRALCLIKNPTELLNVLVFMLQ 272
                              L +  ++RT + C    + +  LC      E   +L+ M +
Sbjct: 354 GTLLNGLYKSAKFDVARNILERYSINRTSLNCISHTVMIDGLCRNGLLDEAFQLLIEMCK 413

Query: 273 TQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQ 332
               PD+IT + +INGFCK+G + +A +V++ +    F  P+ V F+T+I+    VG + 
Sbjct: 414 DGVYPDIITFSVLINGFCKVGNLNKAKEVMSKIYREGF-VPNNVIFSTLIYNSCKVGNVY 472

Query: 333 EALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIV 392
           E +   Y  M   G +    T N+++  L    ++ EA+E  + +  IG+V +S T+  +
Sbjct: 473 EGMK-FYAAMNLNGQNADNFTCNSLVASLCENGKLVEAEEFLHHISRIGLVPNSVTFDCI 531

Query: 393 IDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGV 452
           I+G         A   +D ++   +    + Y +++K LC+     EA   L +L    +
Sbjct: 532 INGYANVGDGSGAFSVFDKMISCGHHPSPFTYGSLLKVLCKGQNFWEARKLLKKLHCIPL 591

Query: 453 TPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
             + + YN +I    K     EA ++  EM +N + PD+ T+
Sbjct: 592 AVDTISYNTLIVEISKSGNLLEAVRLFEEMIQNNILPDSYTY 633



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 110/473 (23%), Positives = 220/473 (46%), Gaps = 7/473 (1%)

Query: 28  NVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLM 87
           N   +  LI  Y R G +  A   F  M   G  P+  T ++++  +++     RA+ L+
Sbjct: 104 NPAVFDLLIRVYLRQGMVGHAVNTFSSMLIRGFKPSVYTCNMIMASMVKNC---RAH-LV 159

Query: 88  FKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMID 147
           +  +++M     +  N ++F  L+  LC +G + +   I   M +   V    +   ++ 
Sbjct: 160 WXFFKQMLTSR-VCPNVSSFNILISVLCVQGKLKKAVNILTMMERNGYVPTIVSYNTLLS 218

Query: 148 SLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLP 207
             C+ GR   A  +++ M  +G+   + +YN  +  LC++    + Y +L++       P
Sbjct: 219 WCCKKGRFKFALVLIHHMECKGIQADVCTYNMFIDSLCRNSRSAQGYLVLKKMRNKMITP 278

Query: 208 SEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVL 267
           +E +Y  L+ G   E  +  A +V   M+           NI +   C+  N  E L +L
Sbjct: 279 NEVSYNTLINGFVKEGKIGVATRVFNEMIELNLSPNLITYNILINGYCINGNFEEALRLL 338

Query: 268 VFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLN 327
             M     +P+ +T+ T++NG  K  + + A  +L      +  + + ++ T +I GL  
Sbjct: 339 DVMEANDVRPNEVTIGTLLNGLYKSAKFDVARNILERYSINR-TSLNCISHTVMIDGLCR 397

Query: 328 VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADST 387
            G + EA  LL + M + G  P I+T++ ++ G  ++  + +AKEV + +   G V ++ 
Sbjct: 398 NGLLDEAFQLLIE-MCKDGVYPDIITFSVLINGFCKVGNLNKAKEVMSKIYREGFVPNNV 456

Query: 388 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYEL 447
            ++ +I   C+   + E  +F+  +       DN+   +++  LC +GK+ EA  FL+ +
Sbjct: 457 IFSTLIYNSCKVGNVYEGMKFYAAMNLNGQNADNFTCNSLVASLCENGKLVEAEEFLHHI 516

Query: 448 VDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKL 500
              G+ PN V ++ +I+G   +     A+ +  +M   G +P   T+  L K+
Sbjct: 517 SRIGLVPNSVTFDCIINGYANVGDGSGAFSVFDKMISCGHHPSPFTYGSLLKV 569



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 111/484 (22%), Positives = 213/484 (44%), Gaps = 6/484 (1%)

Query: 4    LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            LC      EA KL   +       + +SY TLI    ++G +  A ++F+EM    +LP+
Sbjct: 570  LCKGQNFWEARKLLKKLHCIPLAVDTISYNTLIVEISKSGNLLEAVRLFEEMIQNNILPD 629

Query: 64   SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            S TY+ ++ G++R    E   V  F    R+ ++E L++N+  +   +D L + G     
Sbjct: 630  SYTYTCILSGLIR----EGRLVCAFIFLGRLMQKEILTLNSIVYTCFIDGLFKAGQSKAA 685

Query: 124  FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
              + ++M +     +  A   + D   R G+   AS ++   R + + P+L ++N ++HG
Sbjct: 686  LYLFKEMEEKGLSLDLIALNSITDGYSRMGKVFSASSLISKTRNKNVIPNLTTFNILLHG 745

Query: 184  LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
              +    M  ++L     + G+ P+  TY  L+ GLC    LE   K+L+  +++     
Sbjct: 746  YSRGQDIMSCFKLYNLMRRSGFFPNRLTYHSLILGLCNHGMLELGIKMLKMFIAESSTID 805

Query: 244  TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                N+ +R  C I +  +++++   M   +   D  T   V +   +    +     ++
Sbjct: 806  DLTFNMLIRKCCEINDLDKVIDLTHNMEVFRVSLDKDTQKAVTDVLVRRMVSQNYFVFMH 865

Query: 304  DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            +M+   F  P +  + T++  +  VG IQ A  L  Q M   G S       A++RGL  
Sbjct: 866  EMLKKGF-IPTSKQYCTMMKRMCRVGDIQGAFKLKDQ-MVALGISLDDAAECAMVRGLAL 923

Query: 364  LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
              ++EEA  +   ML +  +  ++T+  ++   C+ +   EA      +       D   
Sbjct: 924  CGKIEEAMWILQRMLRMKKIPTTSTFTTLMHVFCKKDNFKEAHNLKILMEHYRVKLDIVA 983

Query: 424  YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
            Y  +I   C +G +  A+ F  E+   G+ PN+  Y V++              +L+++ 
Sbjct: 984  YNVLISACCANGDVITALDFYEEIKQKGLLPNMTTYRVLVSAISTKHYVSRGEIVLKDLN 1043

Query: 484  KNGL 487
              GL
Sbjct: 1044 DRGL 1047



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 44/93 (47%)

Query: 1    MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
            M   C      EAH L   M+      ++V+Y  LI   C  G++  A   ++E++  G+
Sbjct: 953  MHVFCKKDNFKEAHNLKILMEHYRVKLDIVAYNVLISACCANGDVITALDFYEEIKQKGL 1012

Query: 61   LPNSLTYSVLVRGVLRTRDVERANVLMFKLWER 93
            LPN  TY VLV  +     V R  +++  L +R
Sbjct: 1013 LPNMTTYRVLVSAISTKHYVSRGEIVLKDLNDR 1045


>gi|255572834|ref|XP_002527349.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533268|gb|EEF35021.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 443

 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 105/344 (30%), Positives = 177/344 (51%), Gaps = 2/344 (0%)

Query: 109 NLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKR 168
           N +  L R G + E FR  E M     + +   C  +I   C+ G+   A+R++ ++   
Sbjct: 89  NNLSKLVRNGELEEGFRFLESMVYRGDIPDIIPCTSLIRGFCKIGKTRKATRIMEIIEDS 148

Query: 169 GLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKA 228
           G  P +++YN ++ G+C  G  M A +LL + ++ G  PS  T+ +L+  LC +  L +A
Sbjct: 149 GAVPDVITYNVLISGMCSTGRWMDAEKLLADMVRRGCSPSVVTFNILINFLCRKGLLGRA 208

Query: 229 RKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVING 288
             VL+ M        +   N  L   C  K     +  L  M    C PD++T NT++  
Sbjct: 209 IDVLEKMPKHGCTPNSLSYNPLLHGFCKEKKMERAIEYLGKMTSRGCYPDIVTYNTLLTA 268

Query: 289 FCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYS 348
            CK G+++ A+++LN + + K C+P  +T+ T+I GL  VG+  +A  LL + M  +G  
Sbjct: 269 LCKDGKVDAAVELLNQL-SSKGCSPVLITYNTVIDGLSKVGKTDQAAKLLDE-MRAKGLK 326

Query: 349 PGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRF 408
           P I+TY++++ GL R  +V+EA + F+ +  +GV  ++ TY  ++ GLC++ + D A  F
Sbjct: 327 PDIITYSSLVGGLSREGKVDEAIKFFHDLEVLGVKPNAITYNAIMLGLCKARKTDRAIDF 386

Query: 409 WDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGV 452
              +V          Y  +I+GL   G   EA+  L EL   GV
Sbjct: 387 LAYMVQRGCKPTEASYTILIEGLAYEGLAKEALELLNELCLRGV 430



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 103/349 (29%), Positives = 180/349 (51%), Gaps = 10/349 (2%)

Query: 138 EEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLL 197
           EE    + +  L R+G      R +  M  RG  P ++   S++ G CK G   +A +++
Sbjct: 83  EEIESNNNLSKLVRNGELEEGFRFLESMVYRGDIPDIIPCTSLIRGFCKIGKTRKATRIM 142

Query: 198 EEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLI 257
           E     G +P   TY VL+ G+C       A K+L  M+ +         NI +  LC  
Sbjct: 143 EIIEDSGAVPDVITYNVLISGMCSTGRWMDAEKLLADMVRRGCSPSVVTFNILINFLCRK 202

Query: 258 KNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVT 317
                 ++VL  M +  C P+ ++ N +++GFCK  ++E A++ L  M + + C PD VT
Sbjct: 203 GLLGRAIDVLEKMPKHGCTPNSLSYNPLLHGFCKEKKMERAIEYLGKMTS-RGCYPDIVT 261

Query: 318 FTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCM 377
           + T++  L   G++  A+ LL Q +  +G SP ++TYN V+ GL ++ + ++A ++ + M
Sbjct: 262 YNTLLTALCKDGKVDAAVELLNQ-LSSKGCSPVLITYNTVIDGLSKVGKTDQAAKLLDEM 320

Query: 378 LGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI----VWPSNIHDNYVYAAMIKGLCR 433
              G+  D  TY+ ++ GL    ++DEA +F+ D+    V P+ I     Y A++ GLC+
Sbjct: 321 RAKGLKPDIITYSSLVGGLSREGKVDEAIKFFHDLEVLGVKPNAI----TYNAIMLGLCK 376

Query: 434 SGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
           + K   A+ FL  +V  G  P    Y ++I+G     + +EA ++L E+
Sbjct: 377 ARKTDRAIDFLAYMVQRGCKPTEASYTILIEGLAYEGLAKEALELLNEL 425



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 101/396 (25%), Positives = 181/396 (45%), Gaps = 47/396 (11%)

Query: 2   DQLCGLSRVGEAHKLFFDMKS---RGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHC 58
           + L  L R GE  + F  ++S   RG +P+++  T+LI G+C+ G+   A ++ + +   
Sbjct: 89  NNLSKLVRNGELEEGFRFLESMVYRGDIPDIIPCTSLIRGFCKIGKTRKATRIMEIIEDS 148

Query: 59  GVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREG 118
           G +P+ +TY+VL+ G+  T     A  L+  +  R       S +   F  L++ LCR+G
Sbjct: 149 GAVPDVITYNVLISGMCSTGRWMDAEKLLADMVRR-----GCSPSVVTFNILINFLCRKG 203

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
            +     + E MP+        +   ++   C+  +   A   +  M  RG  P +V+YN
Sbjct: 204 LLGRAIDVLEKMPKHGCTPNSLSYNPLLHGFCKEKKMERAIEYLGKMTSRGCYPDIVTYN 263

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
           +++  LCK G    A +LL +    G  P   TY  +++GL      ++A K+L  M +K
Sbjct: 264 TLLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAAKLLDEMRAK 323

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
                                                +PD+IT ++++ G  + G+++EA
Sbjct: 324 -----------------------------------GLKPDIITYSSLVGGLSREGKVDEA 348

Query: 299 LKVLNDM-VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           +K  +D+ V G    P+A+T+  I+ GL    +   A++ L   M QRG  P   +Y  +
Sbjct: 349 IKFFHDLEVLG--VKPNAITYNAIMLGLCKARKTDRAIDFL-AYMVQRGCKPTEASYTIL 405

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVI 393
           + GL      +EA E+ N +   GVV  S+   + +
Sbjct: 406 IEGLAYEGLAKEALELLNELCLRGVVKKSSAEKVAV 441



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 69/221 (31%), Positives = 118/221 (53%), Gaps = 2/221 (0%)

Query: 277 PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALN 336
           PD+I   ++I GFCK+G+  +A +++ +++      PD +T+  +I G+ + GR  +A  
Sbjct: 117 PDIIPCTSLIRGFCKIGKTRKATRIM-EIIEDSGAVPDVITYNVLISGMCSTGRWMDAEK 175

Query: 337 LLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 396
           LL   M +RG SP +VT+N ++  L R   +  A +V   M   G   +S +Y  ++ G 
Sbjct: 176 LLAD-MVRRGCSPSVVTFNILINFLCRKGLLGRAIDVLEKMPKHGCTPNSLSYNPLLHGF 234

Query: 397 CESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNI 456
           C+  +++ A  +   +       D   Y  ++  LC+ GK+  AV  L +L   G +P +
Sbjct: 235 CKEKKMERAIEYLGKMTSRGCYPDIVTYNTLLTALCKDGKVDAAVELLNQLSSKGCSPVL 294

Query: 457 VCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           + YN VIDG  K+    +A ++L EMR  GL PD +T+  L
Sbjct: 295 ITYNTVIDGLSKVGKTDQAAKLLDEMRAKGLKPDIITYSSL 335



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 78/156 (50%), Gaps = 19/156 (12%)

Query: 352 VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIV----------IDGLCESNQ 401
           V++N  L+ L +L          N  LG G V+ S  +++           +  L  + +
Sbjct: 49  VSFNGKLQSLDKLP---------NGHLGNGHVSLSPIHSLTNFEEIESNNNLSKLVRNGE 99

Query: 402 LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNV 461
           L+E  RF + +V+  +I D     ++I+G C+ GK  +A   +  + DSG  P+++ YNV
Sbjct: 100 LEEGFRFLESMVYRGDIPDIIPCTSLIRGFCKIGKTRKATRIMEIIEDSGAVPDVITYNV 159

Query: 462 VIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           +I G C      +A ++L +M + G +P  VT+ IL
Sbjct: 160 LISGMCSTGRWMDAEKLLADMVRRGCSPSVVTFNIL 195



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 74/151 (49%), Gaps = 2/151 (1%)

Query: 352 VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDD 411
           +  N  L  L R   +EE       M+  G + D      +I G C+  +  +A R  + 
Sbjct: 85  IESNNNLSKLVRNGELEEGFRFLESMVYRGDIPDIIPCTSLIRGFCKIGKTRKATRIMEI 144

Query: 412 IVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSM 471
           I     + D   Y  +I G+C +G+  +A   L ++V  G +P++V +N++I+  C+  +
Sbjct: 145 IEDSGAVPDVITYNVLISGMCSTGRWMDAEKLLADMVRRGCSPSVVTFNILINFLCRKGL 204

Query: 472 KREAYQILREMRKNGLNPDAVTWRILDKLHG 502
              A  +L +M K+G  P+++++  L  LHG
Sbjct: 205 LGRAIDVLEKMPKHGCTPNSLSYNPL--LHG 233


>gi|356499079|ref|XP_003518371.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Glycine max]
          Length = 615

 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 106/380 (27%), Positives = 191/380 (50%), Gaps = 42/380 (11%)

Query: 16  LFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVL 75
           L+ ++   G+ P +  +  L+HG+C+ G++  A  VFDE+   G+ P  ++++ L+ G  
Sbjct: 235 LYLEVLDSGYPPKIYFFNVLMHGFCKAGDVGNARLVFDEIPKRGLRPTVVSFNTLISGCC 294

Query: 76  RTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKS 135
           ++ DVE      F+L   M E E +  +   F+ L++ LC+EG ++E   + ++M     
Sbjct: 295 KSGDVEEG----FRLKGVM-ESEGVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGRGL 349

Query: 136 VNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQ 195
           V        +ID  C+ G+   A +   +M  +G+ P LV+YN++++GLCK G    A +
Sbjct: 350 VPNGVTFTTLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARR 409

Query: 196 LLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALC 255
           L+ E    G  P + T+  L++G C + D+E A                           
Sbjct: 410 LVNEMTASGLKPDKITFTTLIDGCCKDGDMESA--------------------------- 442

Query: 256 LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA 315
                   L +   M++   + D +    +I+G C+ GR+ +A ++L DM++  F  PD 
Sbjct: 443 --------LEIKRRMVEEGIELDDVAFTALISGLCREGRVHDAGRMLTDMLSAGF-KPDD 493

Query: 316 VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN 375
            T+T +I      G ++    LL + M   G+ PG+VTYNA++ GL +  +++ AK + +
Sbjct: 494 PTYTMVIDCFCKKGDVKMGFKLLKE-MQSDGHVPGVVTYNALMNGLCKQGQMKNAKMLLD 552

Query: 376 CMLGIGVVADSTTYAIVIDG 395
            ML +GV  +  TY I++DG
Sbjct: 553 AMLNVGVAPNDITYNILLDG 572



 Score =  151 bits (381), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 100/379 (26%), Positives = 170/379 (44%), Gaps = 72/379 (18%)

Query: 169 GLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKA 228
           G  P +  +N ++HG CK G    A  + +E  + G  P+  ++  L+ G C   D+E+ 
Sbjct: 243 GYPPKIYFFNVLMHGFCKAGDVGNARLVFDEIPKRGLRPTVVSFNTLISGCCKSGDVEEG 302

Query: 229 RKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVING 288
            ++   M S+       +C                             PDV T + +ING
Sbjct: 303 FRLKGVMESEG------VC-----------------------------PDVFTFSALING 327

Query: 289 FCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYS 348
            CK GR++E   +L D + G+   P+ VTFTT+I G    G++  AL   +Q+M  +G  
Sbjct: 328 LCKEGRLDEG-SLLFDEMCGRGLVPNGVTFTTLIDGQCKGGKVDLALKN-FQMMLAQGVR 385

Query: 349 PGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRF 408
           P +VTYNA++ GL ++  ++EA+ + N M   G+  D  T+  +IDG C+   ++ A   
Sbjct: 386 PDLVTYNALINGLCKVGDLKEARRLVNEMTASGLKPDKITFTTLIDGCCKDGDMESALEI 445

Query: 409 WDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN------------- 455
              +V      D+  + A+I GLCR G++H+A   L +++ +G  P+             
Sbjct: 446 KRRMVEEGIELDDVAFTALISGLCREGRVHDAGRMLTDMLSAGFKPDDPTYTMVIDCFCK 505

Query: 456 ----------------------IVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVT 493
                                 +V YN +++G CK    + A  +L  M   G+ P+ +T
Sbjct: 506 KGDVKMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQGQMKNAKMLLDAMLNVGVAPNDIT 565

Query: 494 WRILDKLHGNRGNDFGLRI 512
           + IL   H   G+   + I
Sbjct: 566 YNILLDGHSKHGSSVDVDI 584



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/237 (31%), Positives = 122/237 (51%), Gaps = 5/237 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   R+ E   LF +M  RG VPN V++TTLI G C+ G++D+A K F  M   GV
Sbjct: 325 INGLCKEGRLDEGSLLFDEMCGRGLVPNGVTFTTLIDGQCKGGKVDLALKNFQMMLAQGV 384

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TY+ L+ G+ +  D++ A  L+ ++         L  +   F  L+D  C++G +
Sbjct: 385 RPDLVTYNALINGLCKVGDLKEARRLVNEM-----TASGLKPDKITFTTLIDGCCKDGDM 439

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                I   M +     ++ A   +I  LCR GR H A R++  M   G  P   +Y  +
Sbjct: 440 ESALEIKRRMVEEGIELDDVAFTALISGLCREGRVHDAGRMLTDMLSAGFKPDDPTYTMV 499

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
           +   CK G     ++LL+E    G++P   TY  L+ GLC +  ++ A+ +L  ML+
Sbjct: 500 IDCFCKKGDVKMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQGQMKNAKMLLDAMLN 556



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 60/112 (53%), Gaps = 8/112 (7%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C    V    KL  +M+S GHVP VV+Y  L++G C+ G+M  A  + D M + GV
Sbjct: 500 IDCFCKKGDVKMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQGQMKNAKMLLDAMLNVGV 559

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVD 112
            PN +TY++L+ G   ++     +V +F        E+ L  + A++  LV+
Sbjct: 560 APNDITYNILLDG--HSKHGSSVDVDIF------NSEKGLVTDYASYTALVN 603



 Score = 39.7 bits (91), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 32/65 (49%)

Query: 433 RSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAV 492
           R  +I  +     E++DSG  P I  +NV++ G CK      A  +  E+ K GL P  V
Sbjct: 225 RPVEIERSWALYLEVLDSGYPPKIYFFNVLMHGFCKAGDVGNARLVFDEIPKRGLRPTVV 284

Query: 493 TWRIL 497
           ++  L
Sbjct: 285 SFNTL 289


>gi|147797511|emb|CAN71434.1| hypothetical protein VITISV_010168 [Vitis vinifera]
          Length = 814

 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 137/516 (26%), Positives = 235/516 (45%), Gaps = 29/516 (5%)

Query: 8   SRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTY 67
           SRV +A +LF  M+  G  P+V  Y  LI G C   E++ A  +  EM+  G+ P+    
Sbjct: 277 SRVDKALQLFKKMQKSGFAPDVSVYDALIGGLCAKKEIEKALHLLSEMKELGIDPDIQIL 336

Query: 68  SVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVD-SLCREGYVNEVFRI 126
           S L+       D+ R   L+ +  E +  E  L + N+    LV+     + Y       
Sbjct: 337 SKLIPYCSEEVDIYR---LIEERLEDLDTEAMLLLYNSVLNGLVNGKSVDKAYYLLXAMT 393

Query: 127 AEDMPQGKSVNEEFACGHM-----------IDSLCRSGRNHGASRVVYVMRKRGLTPSLV 175
            ++      VN+ F    M           ID LC +G+   A  +   M + G   +++
Sbjct: 394 GDNYTDNFEVNKFFMVKEMVRPXTTSFSIVIDGLCNTGKLDLALSLFRDMVRVGCKQNVL 453

Query: 176 SYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM 235
            YN+++  L         Y LL+E    G+ P++ T+  +   LC   D+  A  +++ M
Sbjct: 454 LYNNLIDKLSNSNRLEECYLLLKEMKGSGFRPTQFTHNSIFGCLCRREDVTGALDMVREM 513

Query: 236 LSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 295
                    +   + ++ LC  K   E  N L  M++    PD++  +  I+GF K+  +
Sbjct: 514 RVHGHEPWIKHYTLLVKQLCKRKRSAEACNFLAEMVREGFLPDIVAYSAAIDGFVKIKAV 573

Query: 296 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN 355
           ++AL++  D+ A  +C PD V + T+I G   V R+ EA ++L + M  +G  P +VTYN
Sbjct: 574 DQALEIFRDICARGYC-PDVVAYNTLINGFCKVKRVSEAHDILDE-MVAKGLVPSVVTYN 631

Query: 356 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP 415
            ++ G  +   +++A    + M+G     +  TY  +IDGLC + + D+A   W+++   
Sbjct: 632 LLIDGWCKNGDIDQAFHCLSRMVGKEREPNVITYTTLIDGLCNAGRPDDAIHLWNEMRGK 691

Query: 416 SNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREA 475
               +   + A+I GLC+ G    A+ +  E+ +   TP+ + Y  +I           A
Sbjct: 692 GCSPNRISFIALIHGLCKCGWPDAALLYFREMGERE-TPDTIVYVALITSFISNKNPTLA 750

Query: 476 YQILREMRKNGLNPDAVTWRILDKLHGNRGNDFGLR 511
           ++IL+EM   G  PD      LDK      ND  LR
Sbjct: 751 FEILKEMVAKGKFPDP-----LDK------NDLPLR 775



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 128/563 (22%), Positives = 234/563 (41%), Gaps = 93/563 (16%)

Query: 19  DMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTR 78
           +M   G  P+  + T+++  YC + + D A  VF+E+   G + +    S+LV    +  
Sbjct: 184 EMCDSGWEPDKYTLTSVLQAYCNSRKFDKALSVFNEIYGRGWV-DGHVLSILVLTFSKCG 242

Query: 79  DVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNE 138
           +V++A    F+L ERM E+  + +N   F  L+    R+  V++  ++ + M +     +
Sbjct: 243 EVDKA----FELIERM-EDLGIRLNEKTFCVLIHGFVRQSRVDKALQLFKKMQKSGFAPD 297

Query: 139 EFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPS------------------------- 173
                 +I  LC       A  ++  M++ G+ P                          
Sbjct: 298 VSVYDALIGGLCAKKEIEKALHLLSEMKELGIDPDIQILSKLIPYCSEEVDIYRLIEERL 357

Query: 174 --------LVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL----------------PSE 209
                   L+ YNS+++GL       +AY LL       Y                 P  
Sbjct: 358 EDLDTEAMLLLYNSVLNGLVNGKSVDKAYYLLXAMTGDNYTDNFEVNKFFMVKEMVRPXT 417

Query: 210 HTYKVLVEGLCGESDLEKARKVLQFMLS---KKDV-------------DRTRICNIYLR- 252
            ++ ++++GLC    L+ A  + + M+    K++V             +R   C + L+ 
Sbjct: 418 TSFSIVIDGLCNTGKLDLALSLFRDMVRVGCKQNVLLYNNLIDKLSNSNRLEECYLLLKE 477

Query: 253 ------------------ALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGR 294
                              LC  ++ T  L+++  M     +P +     ++   CK  R
Sbjct: 478 MKGSGFRPTQFTHNSIFGCLCRREDVTGALDMVREMRVHGHEPWIKHYTLLVKQLCKRKR 537

Query: 295 IEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTY 354
             EA   L +MV   F  PD V ++  I G + +  + +AL +   +   RGY P +V Y
Sbjct: 538 SAEACNFLAEMVREGFL-PDIVAYSAAIDGFVKIKAVDQALEIFRDIC-ARGYCPDVVAY 595

Query: 355 NAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVW 414
           N ++ G  +++RV EA ++ + M+  G+V    TY ++IDG C++  +D+A      +V 
Sbjct: 596 NTLINGFCKVKRVSEAHDILDEMVAKGLVPSVVTYNLLIDGWCKNGDIDQAFHCLSRMVG 655

Query: 415 PSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKRE 474
                +   Y  +I GLC +G+  +A+H   E+   G +PN + +  +I G CK      
Sbjct: 656 KEREPNVITYTTLIDGLCNAGRPDDAIHLWNEMRGKGCSPNRISFIALIHGLCKCGWPDA 715

Query: 475 AYQILREMRKNGLNPDAVTWRIL 497
           A    REM +    PD + +  L
Sbjct: 716 ALLYFREMGERE-TPDTIVYVAL 737



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 96/385 (24%), Positives = 167/385 (43%), Gaps = 43/385 (11%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   ++  A  LF DM   G   NV+ Y  LI     +  ++  Y +  EM+  G 
Sbjct: 424 IDGLCNTGKLDLALSLFRDMVRVGCKQNVLLYNNLIDKLSNSNRLEECYLLLKEMKGSGF 483

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P   T++ +   + R  DV  A  ++ ++  R+   E    +   +  LV  LC+    
Sbjct: 484 RPTQFTHNSIFGCLCRREDVTGALDMVREM--RVHGHEPWIKH---YTLLVKQLCKRKRS 538

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E      +M +   + +  A    ID   +      A  +   +  RG  P +V+YN++
Sbjct: 539 AEACNFLAEMVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFRDICARGYCPDVVAYNTL 598

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++G CK      A+ +L+E +  G +PS  TY +L++G C   D+++A   L  M+ K+ 
Sbjct: 599 INGFCKVKRVSEAHDILDEMVAKGLVPSVVTYNLLIDGWCKNGDIDQAFHCLSRMVGKER 658

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                              +P+VIT  T+I+G C  GR ++A+ 
Sbjct: 659 -----------------------------------EPNVITYTTLIDGLCNAGRPDDAIH 683

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           + N+M  GK C+P+ ++F  +I GL   G    AL L ++ M +R  +P  + Y A++  
Sbjct: 684 LWNEM-RGKGCSPNRISFIALIHGLCKCGWPDAAL-LYFREMGERE-TPDTIVYVALITS 740

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVAD 385
               +    A E+   M+  G   D
Sbjct: 741 FISNKNPTLAFEILKEMVAKGKFPD 765



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/286 (20%), Positives = 113/286 (39%), Gaps = 54/286 (18%)

Query: 270 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG 329
           M  +  +PD  TL +V+  +C   + ++AL V N++    +   D    + ++      G
Sbjct: 185 MCDSGWEPDKYTLTSVLQAYCNSRKFDKALSVFNEIYGRGWV--DGHVLSILVLTFSKCG 242

Query: 330 RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTY 389
            + +A  L+ + M   G      T+  ++ G  R  RV++A ++F  M   G   D + Y
Sbjct: 243 EVDKAFELI-ERMEDLGIRLNEKTFCVLIHGFVRQSRVDKALQLFKKMQKSGFAPDVSVY 301

Query: 390 AIVIDGLCESNQLDEAKRFWDD----------------IVWPSNIHDNY----------- 422
             +I GLC   ++++A     +                I + S   D Y           
Sbjct: 302 DALIGGLCAKKEIEKALHLLSEMKELGIDPDIQILSKLIPYCSEEVDIYRLIEERLEDLD 361

Query: 423 ------VYAAMIKGLCRSGKIHEAVHFL----------------YELVDSGVTPNIVCYN 460
                 +Y +++ GL     + +A + L                + +V   V P    ++
Sbjct: 362 TEAMLLLYNSVLNGLVNGKSVDKAYYLLXAMTGDNYTDNFEVNKFFMVKEMVRPXTTSFS 421

Query: 461 VVIDGACKLSMKREAYQILREMRKNGLNPDAVTW-RILDKL-HGNR 504
           +VIDG C       A  + R+M + G   + + +  ++DKL + NR
Sbjct: 422 IVIDGLCNTGKLDLALSLFRDMVRVGCKQNVLLYNNLIDKLSNSNR 467


>gi|224075357|ref|XP_002304600.1| predicted protein [Populus trichocarpa]
 gi|222842032|gb|EEE79579.1| predicted protein [Populus trichocarpa]
          Length = 641

 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 109/401 (27%), Positives = 197/401 (49%), Gaps = 4/401 (0%)

Query: 99  DLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGA 158
           ++S N   F  ++ ++C+ G V++  ++  DMP  K   + +    ++D LC++ R   A
Sbjct: 164 NISPNVLTFNLVIKTMCKVGLVDDAVQMFRDMPVSKCQPDVYTYCTLMDGLCKADRIDEA 223

Query: 159 SRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEG 218
             ++  M+  G  PS V++N +++GLCK G   R  +L++     G  P+E TY  L+ G
Sbjct: 224 VSLLDEMQIDGCFPSPVTFNVLINGLCKKGDLARVAKLVDNMFLKGCAPNEVTYNTLIHG 283

Query: 219 LCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPD 278
           LC +  LEKA  +L  M+S K V         +  L       +   VL  M +     +
Sbjct: 284 LCLKGKLEKAISLLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGARVLALMEERGYHVN 343

Query: 279 VITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLL 338
               + +I+G  K G+ +EA+++  +M   K C  + + ++ +I GL   G+  EAL +L
Sbjct: 344 EYVYSALISGLFKEGKSQEAMQLFKEMTV-KECELNTIVYSAVIDGLCRDGKPDEALEVL 402

Query: 339 YQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE 398
            ++   R   P   TY+++++G F      +A E++  M       +   Y+++I GLC+
Sbjct: 403 SEMTNNR-CKPNAYTYSSLMKGFFEAGNGHKAIEMWKDMAKHNFTQNEVCYSVLIHGLCK 461

Query: 399 SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELV--DSGVTPNI 456
             ++ EA   W  ++      D   Y +MI GL  +G + +A+    E++  +    P++
Sbjct: 462 DGKVKEAMMVWAQMLGKGCKPDVVAYGSMINGLSNAGLVEDALQLYNEMLCQEPDSQPDV 521

Query: 457 VCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           V YN++++  CK S    A  +L  M   G +PD VT  I 
Sbjct: 522 VTYNILLNALCKQSSISRAIDLLNSMLDRGCDPDLVTCIIF 562



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 109/412 (26%), Positives = 201/412 (48%), Gaps = 8/412 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           +C +  V +A ++F DM      P+V +Y TL+ G C+   +D A  + DEM+  G  P+
Sbjct: 179 MCKVGLVDDAVQMFRDMPVSKCQPDVYTYCTLMDGLCKADRIDEAVSLLDEMQIDGCFPS 238

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +T++VL+ G+ +  D+ R   L+  ++ +       + N   +  L+  LC +G + + 
Sbjct: 239 PVTFNVLINGLCKKGDLARVAKLVDNMFLK-----GCAPNEVTYNTLIHGLCLKGKLEKA 293

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             + + M   K V      G +I+ L + GR    +RV+ +M +RG   +   Y++++ G
Sbjct: 294 ISLLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGARVLALMEERGYHVNEYVYSALISG 353

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           L K G    A QL +E        +   Y  +++GLC +   ++A +VL  M + +    
Sbjct: 354 LFKEGKSQEAMQLFKEMTVKECELNTIVYSAVIDGLCRDGKPDEALEVLSEMTNNRCKPN 413

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               +  ++      N  + + +   M +     + +  + +I+G CK G+++EA+ V  
Sbjct: 414 AYTYSSLMKGFFEAGNGHKAIEMWKDMAKHNFTQNEVCYSVLIHGLCKDGKVKEAMMVWA 473

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYS-PGIVTYNAVLRGLF 362
            M+ GK C PD V + ++I GL N G +++AL L  +++ Q   S P +VTYN +L  L 
Sbjct: 474 QML-GKGCKPDVVAYGSMINGLSNAGLVEDALQLYNEMLCQEPDSQPDVVTYNILLNALC 532

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCES-NQLDEAKRFWDDIV 413
           +   +  A ++ N ML  G   D  T  I +  L E  +   + + F D +V
Sbjct: 533 KQSSISRAIDLLNSMLDRGCDPDLVTCIIFLRTLREKLDPPQDGREFLDGLV 584



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 111/434 (25%), Positives = 205/434 (47%), Gaps = 33/434 (7%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           MD LC   R+ EA  L  +M+  G  P+ V++  LI+G C+ G++    K+ D M   G 
Sbjct: 211 MDGLCKADRIDEAVSLLDEMQIDGCFPSPVTFNVLINGLCKKGDLARVAKLVDNMFLKGC 270

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +TY+ L+ G+     +E+A      L +RM   + +  N   +  +++ L ++G  
Sbjct: 271 APNEVTYNTLIHGLCLKGKLEKA----ISLLDRMVSSKCVP-NVVTYGTIINGLVKQGRA 325

Query: 121 NEVFRIAEDMPQ-GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
            +  R+   M + G  VN E+    +I  L + G++  A ++   M  +    + + Y++
Sbjct: 326 LDGARVLALMEERGYHVN-EYVYSALISGLFKEGKSQEAMQLFKEMTVKECELNTIVYSA 384

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++ GLC+ G    A ++L E       P+ +TY  L++G     +  KA ++ + M +K 
Sbjct: 385 VIDGLCRDGKPDEALEVLSEMTNNRCKPNAYTYSSLMKGFFEAGNGHKAIEMWKDM-AKH 443

Query: 240 DVDRTRIC-NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
           +  +  +C ++ +  LC      E + V   ML   C+PDV+   ++ING    G +E+A
Sbjct: 444 NFTQNEVCYSVLIHGLCKDGKVKEAMMVWAQMLGKGCKPDVVAYGSMINGLSNAGLVEDA 503

Query: 299 LKVLNDMVAGKF-CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           L++ N+M+  +    PD VT+  ++  L     I  A++LL  ++  RG  P +VT    
Sbjct: 504 LQLYNEMLCQEPDSQPDVVTYNILLNALCKQSSISRAIDLLNSML-DRGCDPDLVTCIIF 562

Query: 358 LRG---------------------LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 396
           LR                      L + +RV  A ++   ML   +    +T+  V++ L
Sbjct: 563 LRTLREKLDPPQDGREFLDGLVVRLLKRQRVLGASKIVEVMLQKLLPPKPSTWTRVVEDL 622

Query: 397 CESNQLDEA-KRFW 409
           C   ++  A ++ W
Sbjct: 623 CNPKKVQAAIQKCW 636



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 112/472 (23%), Positives = 206/472 (43%), Gaps = 75/472 (15%)

Query: 31  SYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKL 90
           ++ +LI  Y   G+     KV D MR    +     + V+ +   +    E+A      L
Sbjct: 62  TFYSLIDNYANLGDFKSLEKVLDRMRCEKRVVVEKCFVVIFKAYGKAHLPEKA----VGL 117

Query: 91  WERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC 150
           ++RM  E +      +F ++++ + +EG           +   K VN             
Sbjct: 118 FDRMAYEFECKRTVKSFNSVLNVIIQEGLFYRALEFYNHVIGAKGVN------------- 164

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
                              ++P+++++N ++  +CK G    A Q+  +       P  +
Sbjct: 165 -------------------ISPNVLTFNLVIKTMCKVGLVDDAVQMFRDMPVSKCQPDVY 205

Query: 211 TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM 270
           TY  L++GLC    +++A  +L  M            N+ +  LC   +   +  ++  M
Sbjct: 206 TYCTLMDGLCKADRIDEAVSLLDEMQIDGCFPSPVTFNVLINGLCKKGDLARVAKLVDNM 265

Query: 271 LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR 330
               C P+ +T NT+I+G C  G++E+A+ +L+ MV+ K C P+ VT+ TII GL+  GR
Sbjct: 266 FLKGCAPNEVTYNTLIHGLCLKGKLEKAISLLDRMVSSK-CVPNVVTYGTIINGLVKQGR 324

Query: 331 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYA 390
             +   +L  +M +RGY      Y+A++ GLF+  + +EA ++F  M     V +     
Sbjct: 325 ALDGARVL-ALMEERGYHVNEYVYSALISGLFKEGKSQEAMQLFKEM----TVKE----- 374

Query: 391 IVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 450
                 CE N +                    VY+A+I GLCR GK  EA+  L E+ ++
Sbjct: 375 ------CELNTI--------------------VYSAVIDGLCRDGKPDEALEVLSEMTNN 408

Query: 451 GVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
              PN   Y+ ++ G  +     +A ++ ++M K+    + V + +L  +HG
Sbjct: 409 RCKPNAYTYSSLMKGFFEAGNGHKAIEMWKDMAKHNFTQNEVCYSVL--IHG 458



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/261 (31%), Positives = 135/261 (51%), Gaps = 6/261 (2%)

Query: 248 NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM-V 306
           N+ ++ +C +    + + +   M  ++CQPDV T  T+++G CK  RI+EA+ +L++M +
Sbjct: 173 NLVIKTMCKVGLVDDAVQMFRDMPVSKCQPDVYTYCTLMDGLCKADRIDEAVSLLDEMQI 232

Query: 307 AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 366
            G  C P  VTF  +I GL   G +     L+   M  +G +P  VTYN ++ GL    +
Sbjct: 233 DG--CFPSPVTFNVLINGLCKKGDLARVAKLVDN-MFLKGCAPNEVTYNTLIHGLCLKGK 289

Query: 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN-YVYA 425
           +E+A  + + M+    V +  TY  +I+GL +  +  +  R    ++     H N YVY+
Sbjct: 290 LEKAISLLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGARVLA-LMEERGYHVNEYVYS 348

Query: 426 AMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN 485
           A+I GL + GK  EA+    E+       N + Y+ VIDG C+     EA ++L EM  N
Sbjct: 349 ALISGLFKEGKSQEAMQLFKEMTVKECELNTIVYSAVIDGLCRDGKPDEALEVLSEMTNN 408

Query: 486 GLNPDAVTWRILDKLHGNRGN 506
              P+A T+  L K     GN
Sbjct: 409 RCKPNAYTYSSLMKGFFEAGN 429



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 73/307 (23%), Positives = 142/307 (46%), Gaps = 5/307 (1%)

Query: 195 QLLEEGIQFG-YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRA 253
           ++ + G + G Y   + T+  L++      D +   KVL  M  +K V   +   +  +A
Sbjct: 45  KIFKSGPKMGSYKLGDSTFYSLIDNYANLGDFKSLEKVLDRMRCEKRVVVEKCFVVIFKA 104

Query: 254 LCLIKNPTELLNVLVFM-LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC- 311
                 P + + +   M  + +C+  V + N+V+N   + G    AL+  N ++  K   
Sbjct: 105 YGKAHLPEKAVGLFDRMAYEFECKRTVKSFNSVLNVIIQEGLFYRALEFYNHVIGAKGVN 164

Query: 312 -APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEA 370
            +P+ +TF  +I  +  VG + +A+ + ++ MP     P + TY  ++ GL +  R++EA
Sbjct: 165 ISPNVLTFNLVIKTMCKVGLVDDAVQM-FRDMPVSKCQPDVYTYCTLMDGLCKADRIDEA 223

Query: 371 KEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKG 430
             + + M   G      T+ ++I+GLC+   L    +  D++       +   Y  +I G
Sbjct: 224 VSLLDEMQIDGCFPSPVTFNVLINGLCKKGDLARVAKLVDNMFLKGCAPNEVTYNTLIHG 283

Query: 431 LCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD 490
           LC  GK+ +A+  L  +V S   PN+V Y  +I+G  K     +  ++L  M + G + +
Sbjct: 284 LCLKGKLEKAISLLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGARVLALMEERGYHVN 343

Query: 491 AVTWRIL 497
              +  L
Sbjct: 344 EYVYSAL 350


>gi|224130936|ref|XP_002320961.1| predicted protein [Populus trichocarpa]
 gi|222861734|gb|EEE99276.1| predicted protein [Populus trichocarpa]
          Length = 474

 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 114/397 (28%), Positives = 195/397 (49%), Gaps = 2/397 (0%)

Query: 107 FANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMR 166
           F+ L  S+ R G+   V  +++++       +  +   +I+  C   R      V+  + 
Sbjct: 65  FSKLFSSIVRMGHYETVVYLSKEIEFLGIEQDIHSLSILINCFCHLHRVDFGLSVLSKIL 124

Query: 167 KRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLE 226
           K GL PS+V++ ++++GLC  G   +   L ++ +  G  P+ +TY V++  L       
Sbjct: 125 KLGLEPSIVTFTTLLNGLCMEGKMDQVMMLYDDMLVRGLQPNVYTYNVIINSLSKSGKAN 184

Query: 227 KARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVI 286
           +A   L+ M     V      +  +   CL     E  +V   M+   C P+V T  +++
Sbjct: 185 EALGFLKQMEKVGCVPNVVNYSTLIDGYCLRGQMDEARSVFDLMVSKGCTPNVYTYTSLM 244

Query: 287 NGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
           NG+CK+ RIEEA+++L++ +  K   PD VTFTTII GL   GR   A   L++ +   G
Sbjct: 245 NGYCKIERIEEAVQLLDETLR-KGLVPDIVTFTTIISGLCRAGR-PLAAQQLFRYICAHG 302

Query: 347 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
           ++P I+TY  +L GL +   +EEA  +F  M    V  +   Y I+ID LC+  ++ + K
Sbjct: 303 HTPNIMTYGVLLDGLCKHGNLEEAFALFQEMQRSTVKPNLVIYTILIDSLCKCGKIKDGK 362

Query: 407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466
             +  ++      + Y Y A++  LC+ G I EA     ++ + G TP+   YNV+I G 
Sbjct: 363 ELFSRLIDEGLKPNVYTYTALVGALCKEGLIIEAHKLFRKMEEDGCTPDKCAYNVIIQGF 422

Query: 467 CKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGN 503
            +      A Q++ EM   G + DA T  +L+    N
Sbjct: 423 LQHKDPSMARQLVEEMVNRGFSADAATRALLNDFPTN 459



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 89/338 (26%), Positives = 159/338 (47%), Gaps = 10/338 (2%)

Query: 164 VMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCG-- 221
           +M  R   P +V ++ +   + + G       L +E    G     H+  +L+   C   
Sbjct: 52  LMLLRKPLPCIVEFSKLFSSIVRMGHYETVVYLSKEIEFLGIEQDIHSLSILINCFCHLH 111

Query: 222 --ESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDV 279
             +  L    K+L+  L    V  T + N     LC+     +++ +   ML    QP+V
Sbjct: 112 RVDFGLSVLSKILKLGLEPSIVTFTTLLN----GLCMEGKMDQVMMLYDDMLVRGLQPNV 167

Query: 280 ITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLY 339
            T N +IN   K G+  EAL  L  M     C P+ V ++T+I G    G++ EA ++ +
Sbjct: 168 YTYNVIINSLSKSGKANEALGFLKQM-EKVGCVPNVVNYSTLIDGYCLRGQMDEARSV-F 225

Query: 340 QVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCES 399
            +M  +G +P + TY +++ G  ++ R+EEA ++ +  L  G+V D  T+  +I GLC +
Sbjct: 226 DLMVSKGCTPNVYTYTSLMNGYCKIERIEEAVQLLDETLRKGLVPDIVTFTTIISGLCRA 285

Query: 400 NQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCY 459
            +   A++ +  I    +  +   Y  ++ GLC+ G + EA     E+  S V PN+V Y
Sbjct: 286 GRPLAAQQLFRYICAHGHTPNIMTYGVLLDGLCKHGNLEEAFALFQEMQRSTVKPNLVIY 345

Query: 460 NVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            ++ID  CK    ++  ++   +   GL P+  T+  L
Sbjct: 346 TILIDSLCKCGKIKDGKELFSRLIDEGLKPNVYTYTAL 383



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 90/391 (23%), Positives = 182/391 (46%), Gaps = 42/391 (10%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C L RV     +   +   G  P++V++TTL++G C  G+MD    ++D+M   G+ PN
Sbjct: 107 FCHLHRVDFGLSVLSKILKLGLEPSIVTFTTLLNGLCMEGKMDQVMMLYDDMLVRGLQPN 166

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             TY+V++  + ++     A   +     +  E+     N   ++ L+D  C  G ++E 
Sbjct: 167 VYTYNVIINSLSKSGKANEALGFL-----KQMEKVGCVPNVVNYSTLIDGYCLRGQMDEA 221

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             + + M         +    +++  C+  R   A +++    ++GL P +V++ +I+ G
Sbjct: 222 RSVFDLMVSKGCTPNVYTYTSLMNGYCKIERIEEAVQLLDETLRKGLVPDIVTFTTIISG 281

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LC+ G  + A QL       G+ P+  TY VL++GLC   +LE+A  + Q      ++ R
Sbjct: 282 LCRAGRPLAAQQLFRYICAHGHTPNIMTYGVLLDGLCKHGNLEEAFALFQ------EMQR 335

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
           + +                             +P+++    +I+  CK G+I++  ++ +
Sbjct: 336 STV-----------------------------KPNLVIYTILIDSLCKCGKIKDGKELFS 366

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            ++      P+  T+T ++  L   G I EA + L++ M + G +P    YN +++G  +
Sbjct: 367 RLIDEGL-KPNVYTYTALVGALCKEGLIIEA-HKLFRKMEEDGCTPDKCAYNVIIQGFLQ 424

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVID 394
            +    A+++   M+  G  AD+ T A++ D
Sbjct: 425 HKDPSMARQLVEEMVNRGFSADAATRALLND 455



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/238 (31%), Positives = 126/238 (52%), Gaps = 5/238 (2%)

Query: 276 QPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEAL 335
           + D+ +L+ +IN FC + R++  L VL+ ++      P  VTFTT++ GL   G++ + +
Sbjct: 94  EQDIHSLSILINCFCHLHRVDFGLSVLSKILKLGL-EPSIVTFTTLLNGLCMEGKMDQVM 152

Query: 336 NLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG 395
            +LY  M  RG  P + TYN ++  L +  +  EA      M  +G V +   Y+ +IDG
Sbjct: 153 -MLYDDMLVRGLQPNVYTYNVIINSLSKSGKANEALGFLKQMEKVGCVPNVVNYSTLIDG 211

Query: 396 LCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN 455
            C   Q+DEA+  +D +V      + Y Y +++ G C+  +I EAV  L E +  G+ P+
Sbjct: 212 YCLRGQMDEARSVFDLMVSKGCTPNVYTYTSLMNGYCKIERIEEAVQLLDETLRKGLVPD 271

Query: 456 IVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRI-LDKL--HGNRGNDFGL 510
           IV +  +I G C+      A Q+ R +  +G  P+ +T+ + LD L  HGN    F L
Sbjct: 272 IVTFTTIISGLCRAGRPLAAQQLFRYICAHGHTPNIMTYGVLLDGLCKHGNLEEAFAL 329



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 121/238 (50%), Gaps = 5/238 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C   ++ EA  +F  M S+G  PNV +YT+L++GYC+   ++ A ++ DE    G+
Sbjct: 209 IDGYCLRGQMDEARSVFDLMVSKGCTPNVYTYTSLMNGYCKIERIEEAVQLLDETLRKGL 268

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P+ +T++ ++ G+ R      A  L      R       + N   +  L+D LC+ G +
Sbjct: 269 VPDIVTFTTIISGLCRAGRPLAAQQLF-----RYICAHGHTPNIMTYGVLLDGLCKHGNL 323

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E F + ++M +            +IDSLC+ G+      +   +   GL P++ +Y ++
Sbjct: 324 EEAFALFQEMQRSTVKPNLVIYTILIDSLCKCGKIKDGKELFSRLIDEGLKPNVYTYTAL 383

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
           V  LCK G  + A++L  +  + G  P +  Y V+++G     D   AR++++ M+++
Sbjct: 384 VGALCKEGLIIEAHKLFRKMEEDGCTPDKCAYNVIIQGFLQHKDPSMARQLVEEMVNR 441



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 88/354 (24%), Positives = 152/354 (42%), Gaps = 44/354 (12%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   ++ +   L+ DM  RG  PNV +Y  +I+   ++G+ + A     +M   G 
Sbjct: 139 LNGLCMEGKMDQVMMLYDDMLVRGLQPNVYTYNVIINSLSKSGKANEALGFLKQMEKVGC 198

Query: 61  LPNSLTYSVLVRG-VLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGY 119
           +PN + YS L+ G  LR +  E  +V        +   +  + N   + +L++  C+   
Sbjct: 199 VPNVVNYSTLIDGYCLRGQMDEARSVF------DLMVSKGCTPNVYTYTSLMNGYCKIER 252

Query: 120 VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           + E  ++ ++  +   V +      +I  LCR+GR   A ++   +   G TP++++Y  
Sbjct: 253 IEEAVQLLDETLRKGLVPDIVTFTTIISGLCRAGRPLAAQQLFRYICAHGHTPNIMTYGV 312

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++ GLCKHG    A+ L +E  +    P+   Y +L++ LC      K  K         
Sbjct: 313 LLDGLCKHGNLEEAFALFQEMQRSTVKPNLVIYTILIDSLC------KCGK--------- 357

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                            IK+  EL + L+       +P+V T   ++   CK G I EA 
Sbjct: 358 -----------------IKDGKELFSRLI---DEGLKPNVYTYTALVGALCKEGLIIEAH 397

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVT 353
           K+   M     C PD   +  II G L       A  L+ + M  RG+S    T
Sbjct: 398 KLFRKMEEDG-CTPDKCAYNVIIQGFLQHKDPSMARQLVEE-MVNRGFSADAAT 449


>gi|225465635|ref|XP_002270253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g08310, mitochondrial [Vitis vinifera]
 gi|296085293|emb|CBI29025.3| unnamed protein product [Vitis vinifera]
          Length = 854

 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 138/517 (26%), Positives = 238/517 (46%), Gaps = 31/517 (5%)

Query: 8   SRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTY 67
           SRV +A +LF  M+  G  P+V  Y  LI G C   E++ A  +  EM+  G+ P+    
Sbjct: 317 SRVDKALQLFKKMQKSGFAPDVSVYDALIGGLCAKKEIEKALHLLSEMKELGIDPDIQIL 376

Query: 68  SVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVD--SLCREGYVNEVFR 125
           S L+       D+ R   L+ +  E +  E  L + N+    LV+  S+ +  Y+     
Sbjct: 377 SKLIAYCSEEVDIYR---LIEERLEDLDTEAMLLLYNSVLNGLVNGKSVDKAYYLLRAM- 432

Query: 126 IAEDMPQGKSVNEEFACGHM-----------IDSLCRSGRNHGASRVVYVMRKRGLTPSL 174
             ++      VN+ F    M           ID LC +G+   A  +   M + G   ++
Sbjct: 433 TGDNYTDNFEVNKFFMVKEMVRPDTTSFSIVIDGLCNTGKLDLALSLFRDMVRVGCKQNV 492

Query: 175 VSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQF 234
           + YN+++  L         Y LL+E    G+ P++ T+  +   LC   D+  A  +++ 
Sbjct: 493 LLYNNLIDKLSNSNRLEECYLLLKEMKGSGFRPTQFTHNSIFGCLCRREDVTGALDMVRE 552

Query: 235 MLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGR 294
           M         +   + ++ LC  K   E  N L  M++    PD++  +  I+GF K+  
Sbjct: 553 MRVHGHEPWIKHYTLLVKQLCKRKRSAEACNFLAEMVREGFLPDIVAYSAAIDGFVKIKA 612

Query: 295 IEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTY 354
           +++AL++  D+ A  +C PD V + T+I G   V R+ EA ++L + M  +G  P +VTY
Sbjct: 613 VDQALEIFRDICARGYC-PDVVAYNTLINGFCKVKRVSEAHDILDE-MVAKGLVPSVVTY 670

Query: 355 NAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVW 414
           N ++ G  +   +++A    + M+G     +  TY  +IDGLC + + D+A   W+++  
Sbjct: 671 NLLIDGWCKNGDIDQAFHCLSRMVGKEREPNVITYTTLIDGLCNAGRPDDAIHLWNEMRG 730

Query: 415 PSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKRE 474
                +   + A+I GLC+ G    A+ +  E+ +   TP+ + Y  +I           
Sbjct: 731 KGCSPNRISFIALIHGLCKCGWPDAALLYFREMGERE-TPDTIVYVALITSFISNKNPTL 789

Query: 475 AYQILREMRKNGLNPDAVTWRILDKLHGNRGNDFGLR 511
           A++IL+EM   G  PD      LDK      ND  LR
Sbjct: 790 AFEILKEMVAKGKFPDP-----LDK------NDLPLR 815



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 124/534 (23%), Positives = 226/534 (42%), Gaps = 61/534 (11%)

Query: 19  DMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTR 78
           +M   G  P+  + T+++  YC + + D A  VF+E+   G + +    S+LV    +  
Sbjct: 224 EMCDSGWEPDKYTLTSVLQAYCNSRKFDKALSVFNEIYGRGWV-DGHVLSILVLTFSKCG 282

Query: 79  DVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNE 138
           +V++A    F+L ERM E+  + +N   F  L+    R+  V++  ++ + M +     +
Sbjct: 283 EVDKA----FELIERM-EDLGIRLNEKTFCVLIHGFVRQSRVDKALQLFKKMQKSGFAPD 337

Query: 139 EFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPS------------------------- 173
                 +I  LC       A  ++  M++ G+ P                          
Sbjct: 338 VSVYDALIGGLCAKKEIEKALHLLSEMKELGIDPDIQILSKLIAYCSEEVDIYRLIEERL 397

Query: 174 --------LVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL----------------PSE 209
                   L+ YNS+++GL       +AY LL       Y                 P  
Sbjct: 398 EDLDTEAMLLLYNSVLNGLVNGKSVDKAYYLLRAMTGDNYTDNFEVNKFFMVKEMVRPDT 457

Query: 210 HTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVF 269
            ++ ++++GLC    L+ A  + + M+         + N  +  L       E   +L  
Sbjct: 458 TSFSIVIDGLCNTGKLDLALSLFRDMVRVGCKQNVLLYNNLIDKLSNSNRLEECYLLLKE 517

Query: 270 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM-VAGKFCAPDAVTFTTIIFGLLNV 328
           M  +  +P   T N++    C+   +  AL ++ +M V G    P    +T ++  L   
Sbjct: 518 MKGSGFRPTQFTHNSIFGCLCRREDVTGALDMVREMRVHGH--EPWIKHYTLLVKQLCKR 575

Query: 329 GRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTT 388
            R  EA N L + M + G+ P IV Y+A + G  +++ V++A E+F  +   G   D   
Sbjct: 576 KRSAEACNFLAE-MVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFRDICARGYCPDVVA 634

Query: 389 YAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELV 448
           Y  +I+G C+  ++ EA    D++V    +     Y  +I G C++G I +A H L  +V
Sbjct: 635 YNTLINGFCKVKRVSEAHDILDEMVAKGLVPSVVTYNLLIDGWCKNGDIDQAFHCLSRMV 694

Query: 449 DSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
                PN++ Y  +IDG C      +A  +  EMR  G +P+ +++  L  +HG
Sbjct: 695 GKEREPNVITYTTLIDGLCNAGRPDDAIHLWNEMRGKGCSPNRISFIAL--IHG 746



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 131/541 (24%), Positives = 227/541 (41%), Gaps = 99/541 (18%)

Query: 10  VGEAHKLFFDMKS-RGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           V EA+ LF  +K  R  VPN  S+  L+    ++G +D+      EM   G  P+  T +
Sbjct: 179 VEEANLLFDQVKMMRLCVPNSYSFNCLLEAISKSGSIDLVEMRLKEMCDSGWEPDKYTLT 238

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
            +++    +R  ++A  +  +++ R        V+    + LV +  + G V++ F + E
Sbjct: 239 SVLQAYCNSRKFDKALSVFNEIYGRG------WVDGHVLSILVLTFSKCGEVDKAFELIE 292

Query: 129 DMPQ-GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKH 187
            M   G  +NE+  C                                     ++HG  + 
Sbjct: 293 RMEDLGIRLNEKTFC------------------------------------VLIHGFVRQ 316

Query: 188 GGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM-----------L 236
               +A QL ++  + G+ P    Y  L+ GLC + ++EKA  +L  M           L
Sbjct: 317 SRVDKALQLFKKMQKSGFAPDVSVYDALIGGLCAKKEIEKALHLLSEMKELGIDPDIQIL 376

Query: 237 SK------KDVD-----RTRICNIYLRALCLIKNPTELLNVLV----------------- 268
           SK      ++VD       R+ ++   A+ L+ N   +LN LV                 
Sbjct: 377 SKLIAYCSEEVDIYRLIEERLEDLDTEAMLLLYN--SVLNGLVNGKSVDKAYYLLRAMTG 434

Query: 269 ------------FMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAV 316
                       FM++   +PD  + + VI+G C  G+++ AL +  DMV    C  + +
Sbjct: 435 DNYTDNFEVNKFFMVKEMVRPDTTSFSIVIDGLCNTGKLDLALSLFRDMVRVG-CKQNVL 493

Query: 317 TFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNC 376
            +  +I  L N  R++E   LL + M   G+ P   T+N++   L R   V  A ++   
Sbjct: 494 LYNNLIDKLSNSNRLEECY-LLLKEMKGSGFRPTQFTHNSIFGCLCRREDVTGALDMVRE 552

Query: 377 MLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGK 436
           M   G       Y +++  LC+  +  EA  F  ++V    + D   Y+A I G  +   
Sbjct: 553 MRVHGHEPWIKHYTLLVKQLCKRKRSAEACNFLAEMVREGFLPDIVAYSAAIDGFVKIKA 612

Query: 437 IHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRI 496
           + +A+    ++   G  P++V YN +I+G CK+    EA+ IL EM   GL P  VT+ +
Sbjct: 613 VDQALEIFRDICARGYCPDVVAYNTLINGFCKVKRVSEAHDILDEMVAKGLVPSVVTYNL 672

Query: 497 L 497
           L
Sbjct: 673 L 673



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 96/385 (24%), Positives = 167/385 (43%), Gaps = 43/385 (11%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   ++  A  LF DM   G   NV+ Y  LI     +  ++  Y +  EM+  G 
Sbjct: 464 IDGLCNTGKLDLALSLFRDMVRVGCKQNVLLYNNLIDKLSNSNRLEECYLLLKEMKGSGF 523

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P   T++ +   + R  DV  A  ++ ++  R+   E    +   +  LV  LC+    
Sbjct: 524 RPTQFTHNSIFGCLCRREDVTGALDMVREM--RVHGHEPWIKH---YTLLVKQLCKRKRS 578

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E      +M +   + +  A    ID   +      A  +   +  RG  P +V+YN++
Sbjct: 579 AEACNFLAEMVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFRDICARGYCPDVVAYNTL 638

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++G CK      A+ +L+E +  G +PS  TY +L++G C   D+++A   L  M+ K+ 
Sbjct: 639 INGFCKVKRVSEAHDILDEMVAKGLVPSVVTYNLLIDGWCKNGDIDQAFHCLSRMVGKER 698

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                              +P+VIT  T+I+G C  GR ++A+ 
Sbjct: 699 -----------------------------------EPNVITYTTLIDGLCNAGRPDDAIH 723

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           + N+M  GK C+P+ ++F  +I GL   G    AL L ++ M +R  +P  + Y A++  
Sbjct: 724 LWNEM-RGKGCSPNRISFIALIHGLCKCGWPDAAL-LYFREMGERE-TPDTIVYVALITS 780

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVAD 385
               +    A E+   M+  G   D
Sbjct: 781 FISNKNPTLAFEILKEMVAKGKFPD 805



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 55/241 (22%), Positives = 112/241 (46%), Gaps = 7/241 (2%)

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
           P  LL++ +  + ++C      L   I      G +EEA  + + +   + C P++ +F 
Sbjct: 146 PLSLLSMDI--VNSRCAMSPGALGFFIRCLGSTGLVEEANLLFDQVKMMRLCVPNSYSFN 203

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
            ++  +   G I + + +  + M   G+ P   T  +VL+     R+ ++A  VFN + G
Sbjct: 204 CLLEAISKSGSI-DLVEMRLKEMCDSGWEPDKYTLTSVLQAYCNSRKFDKALSVFNEIYG 262

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
            G V D    +I++    +  ++D+A    + +       +   +  +I G  R  ++ +
Sbjct: 263 RGWV-DGHVLSILVLTFSKCGEVDKAFELIERMEDLGIRLNEKTFCVLIHGFVRQSRVDK 321

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
           A+    ++  SG  P++  Y+ +I G C      +A  +L EM++ G++PD    +IL K
Sbjct: 322 ALQLFKKMQKSGFAPDVSVYDALIGGLCAKKEIEKALHLLSEMKELGIDPDI---QILSK 378

Query: 500 L 500
           L
Sbjct: 379 L 379


>gi|293333312|ref|NP_001168014.1| uncharacterized protein LOC100381738 [Zea mays]
 gi|223945505|gb|ACN26836.1| unknown [Zea mays]
          Length = 462

 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 121/497 (24%), Positives = 236/497 (47%), Gaps = 54/497 (10%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   +  +A +L  +M      PN V++ T I  +C+ G +D A ++ ++M   G  P+
Sbjct: 17  LCCAKQWEQAEELMREMIRNSCHPNEVTFATQIRAFCQNGLLDRAVELLEQMPKYGCTPD 76

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            + YS LV G      V+ A     KL   M                   LCR   V   
Sbjct: 77  VIIYSTLVNGFSEHGRVDEA----LKLLNTM-------------------LCRPNTV--C 111

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           +  A                  +  LC +GR      ++  M ++   P+  +++++++ 
Sbjct: 112 YNAA------------------LKGLCIAGRWEEVGELIAEMVRKDCPPNDATFSTLINS 153

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LC++     A ++LE+  ++GY+P   +Y  ++     ++  + A K+L+ ML K D   
Sbjct: 154 LCQNRLVEYAVEVLEQMQKYGYMPDVVSYNTIISCFSDQARADDALKLLKSMLCKPD--- 210

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
           T   N  L+ LC  K   + + ++  ML+  C+ + +T N +I+  C+ G++++A++V  
Sbjct: 211 TISFNAVLKCLCKAKRWYDAVELVAKMLKKDCRINEMTFNILIDSLCQNGQVKDAIEVF- 269

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           +++    C PD VT++++I G    G  + A +L ++ MP R     I +YNA L+GL  
Sbjct: 270 ELMPKYRCMPDIVTYSSLINGFSEQGLDEMAFDL-FRSMPCRA---DIFSYNATLKGLCM 325

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
             R ++A E+   M+    + +  T+ I+I  LC+   ++ A   ++ +       D + 
Sbjct: 326 AARWDDAGELIADMVTEDCLPNEVTFNILISSLCQKGLVNRAIDVYEQMPKYGITPDIFT 385

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y A+I G    G++ +A+ FL  +      P+ + YN ++ G C+    ++A +++ EM 
Sbjct: 386 YNALINGYSEQGRLDDALKFLSTM---PCEPDTISYNSILKGLCRAERWKDAEKLVTEML 442

Query: 484 KNGLNPDAVTWRILDKL 500
           +    P+ VT++  ++L
Sbjct: 443 RKNCTPNEVTFKYANQL 459



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 107/435 (24%), Positives = 202/435 (46%), Gaps = 19/435 (4%)

Query: 60  VLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGY 119
           V P++ TY+ +++G+   +  E+A  LM     R         N   FA  + + C+ G 
Sbjct: 3   VAPDTYTYNTVLKGLCCAKQWEQAEELM-----REMIRNSCHPNEVTFATQIRAFCQNGL 57

Query: 120 VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           ++    + E MP+     +      +++     GR   A +++  M  R   P+ V YN+
Sbjct: 58  LDRAVELLEQMPKYGCTPDVIIYSTLVNGFSEHGRVDEALKLLNTMLCR---PNTVCYNA 114

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
            + GLC  G      +L+ E ++    P++ T+  L+  LC    +E A +VL+ M    
Sbjct: 115 ALKGLCIAGRWEEVGELIAEMVRKDCPPNDATFSTLINSLCQNRLVEYAVEVLEQMQKYG 174

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
            +      N  +          + L +L  ML   C+PD I+ N V+   CK  R  +A+
Sbjct: 175 YMPDVVSYNTIISCFSDQARADDALKLLKSML---CKPDTISFNAVLKCLCKAKRWYDAV 231

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           +++  M+  K C  + +TF  +I  L   G++++A+ + +++MP+    P IVTY++++ 
Sbjct: 232 ELVAKMLK-KDCRINEMTFNILIDSLCQNGQVKDAIEV-FELMPKYRCMPDIVTYSSLIN 289

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
           G       E A ++F  M      AD  +Y   + GLC + + D+A     D+V    + 
Sbjct: 290 GFSEQGLDEMAFDLFRSM---PCRADIFSYNATLKGLCMAARWDDAGELIADMVTEDCLP 346

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           +   +  +I  LC+ G ++ A+    ++   G+TP+I  YN +I+G  +     +A + L
Sbjct: 347 NEVTFNILISSLCQKGLVNRAIDVYEQMPKYGITPDIFTYNALINGYSEQGRLDDALKFL 406

Query: 480 REMRKNGLNPDAVTW 494
             M      PD +++
Sbjct: 407 STM---PCEPDTISY 418



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 101/394 (25%), Positives = 186/394 (47%), Gaps = 42/394 (10%)

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
           ++  LC + +   A  ++  M +    P+ V++ + +   C++G   RA +LLE+  ++G
Sbjct: 13  VLKGLCCAKQWEQAEELMREMIRNSCHPNEVTFATQIRAFCQNGLLDRAVELLEQMPKYG 72

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC-NIYLRALCLIKNPTEL 263
             P    Y  LV G      +++A K+L  ML + +     +C N  L+ LC+     E+
Sbjct: 73  CTPDVIIYSTLVNGFSEHGRVDEALKLLNTMLCRPNT----VCYNAALKGLCIAGRWEEV 128

Query: 264 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF 323
             ++  M++  C P+  T +T+IN  C+   +E A++VL  M    +  PD V++ TII 
Sbjct: 129 GELIAEMVRKDCPPNDATFSTLINSLCQNRLVEYAVEVLEQMQKYGY-MPDVVSYNTIIS 187

Query: 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 383
              +  R  +AL LL  ++ +    P  +++NAVL+ L + +R  +A E+   ML     
Sbjct: 188 CFSDQARADDALKLLKSMLCK----PDTISFNAVLKCLCKAKRWYDAVELVAKMLKKDCR 243

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWD---------DIVWPSNI---------------- 418
            +  T+ I+ID LC++ Q+ +A   ++         DIV  S++                
Sbjct: 244 INEMTFNILIDSLCQNGQVKDAIEVFELMPKYRCMPDIVTYSSLINGFSEQGLDEMAFDL 303

Query: 419 -------HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSM 471
                   D + Y A +KGLC + +  +A   + ++V     PN V +N++I   C+  +
Sbjct: 304 FRSMPCRADIFSYNATLKGLCMAARWDDAGELIADMVTEDCLPNEVTFNILISSLCQKGL 363

Query: 472 KREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
              A  +  +M K G+ PD  T+  L   +  +G
Sbjct: 364 VNRAIDVYEQMPKYGITPDIFTYNALINGYSEQG 397



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 149/304 (49%), Gaps = 14/304 (4%)

Query: 207 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALC---LIKNPTEL 263
           P  +TY  +++GLC     E+A ++++ M+              +RA C   L+    EL
Sbjct: 5   PDTYTYNTVLKGLCCAKQWEQAEELMREMIRNSCHPNEVTFATQIRAFCQNGLLDRAVEL 64

Query: 264 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF 323
           L     M +  C PDVI  +T++NGF + GR++EALK+LN M+    C P+ V +   + 
Sbjct: 65  LEQ---MPKYGCTPDVIIYSTLVNGFSEHGRVDEALKLLNTML----CRPNTVCYNAALK 117

Query: 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 383
           GL   GR +E   L+ + M ++   P   T++ ++  L + R VE A EV   M   G +
Sbjct: 118 GLCIAGRWEEVGELIAE-MVRKDCPPNDATFSTLINSLCQNRLVEYAVEVLEQMQKYGYM 176

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
            D  +Y  +I    +  + D+A +    ++      D   + A++K LC++ + ++AV  
Sbjct: 177 PDVVSYNTIISCFSDQARADDALKLLKSMLCKP---DTISFNAVLKCLCKAKRWYDAVEL 233

Query: 444 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGN 503
           + +++      N + +N++ID  C+    ++A ++   M K    PD VT+  L      
Sbjct: 234 VAKMLKKDCRINEMTFNILIDSLCQNGQVKDAIEVFELMPKYRCMPDIVTYSSLINGFSE 293

Query: 504 RGND 507
           +G D
Sbjct: 294 QGLD 297



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 83/354 (23%), Positives = 163/354 (46%), Gaps = 51/354 (14%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC    V  A ++   M+  G++P+VVSY T+I  +      D A K+   M     
Sbjct: 151 INSLCQNRLVEYAVEVLEQMQKYGYMPDVVSYNTIISCFSDQARADDALKLLKSML---C 207

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P++++++ +++ + + +    A  L+ K+ ++     D  +N   F  L+DSLC+ G V
Sbjct: 208 KPDTISFNAVLKCLCKAKRWYDAVELVAKMLKK-----DCRINEMTFNILIDSLCQNGQV 262

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +   + E MP+ + + +      +I+     G +  A  +   M  R     + SYN+ 
Sbjct: 263 KDAIEVFELMPKYRCMPDIVTYSSLINGFSEQGLDEMAFDLFRSMPCRA---DIFSYNAT 319

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GLC       A +L+ + +    LP+E T+ +L+  LC +  + +A            
Sbjct: 320 LKGLCMAARWDDAGELIADMVTEDCLPNEVTFNILISSLCQKGLVNRA------------ 367

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                  ++V   M +    PD+ T N +ING+ + GR+++ALK
Sbjct: 368 -----------------------IDVYEQMPKYGITPDIFTYNALINGYSEQGRLDDALK 404

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTY 354
            L+ M     C PD +++ +I+ GL    R ++A  L+ +++ ++  +P  VT+
Sbjct: 405 FLSTMP----CEPDTISYNSILKGLCRAERWKDAEKLVTEML-RKNCTPNEVTF 453



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 102/213 (47%), Gaps = 11/213 (5%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   +V +A ++F  M     +P++V+Y++LI+G+   G  ++A+ +F   R    
Sbjct: 253 IDSLCQNGQVKDAIEVFELMPKYRCMPDIVTYSSLINGFSEQGLDEMAFDLF---RSMPC 309

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             +  +Y+  ++G+      + A  L+  +       ED   N   F  L+ SLC++G V
Sbjct: 310 RADIFSYNATLKGLCMAARWDDAGELIADM-----VTEDCLPNEVTFNILISSLCQKGLV 364

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           N    + E MP+     + F    +I+     GR   A + +  M      P  +SYNSI
Sbjct: 365 NRAIDVYEQMPKYGITPDIFTYNALINGYSEQGRLDDALKFLSTM---PCEPDTISYNSI 421

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYK 213
           + GLC+      A +L+ E ++    P+E T+K
Sbjct: 422 LKGLCRAERWKDAEKLVTEMLRKNCTPNEVTFK 454


>gi|224160015|ref|XP_002338159.1| predicted protein [Populus trichocarpa]
 gi|222871069|gb|EEF08200.1| predicted protein [Populus trichocarpa]
          Length = 368

 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 96/334 (28%), Positives = 173/334 (51%), Gaps = 2/334 (0%)

Query: 165 MRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESD 224
           M  RG  P + +Y +I++GLCK G  + A  L ++  + G  P   TY  +++ LC +  
Sbjct: 1   MVARGYQPDVHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRR 60

Query: 225 LEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNT 284
           + +A  +  +M +K         N  ++ LC      E   +L  M+     P+++T + 
Sbjct: 61  VNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSL 120

Query: 285 VINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ 344
           +IN FCK G + EA  VL  M       P+ VT+++++ G      + EA  L + VM  
Sbjct: 121 LINIFCKEGNVFEARGVLKTMTEMG-VEPNVVTYSSLMNGYSLQAEVFEARKL-FDVMIT 178

Query: 345 RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 404
           +G  P + +YN ++ G  + +R+ EAK++FN M+  G+  D  +Y  +IDGLC+  +L E
Sbjct: 179 KGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLRE 238

Query: 405 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
           A   + +++   N+ D   Y+ ++ G C+ G + +A      +  + + PN+V YN++ID
Sbjct: 239 AHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILID 298

Query: 465 GACKLSMKREAYQILREMRKNGLNPDAVTWRILD 498
             CK    +EA ++  E+   GL P+   W++ +
Sbjct: 299 AMCKSRNLKEARKLFSELFVQGLQPNMKHWKLFE 332



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 83/307 (27%), Positives = 154/307 (50%), Gaps = 2/307 (0%)

Query: 106 AFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVM 165
            +  +++ LC+ G       + + M +     +      +IDSLC+  R + A  +   M
Sbjct: 12  TYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRRVNEALDIFSYM 71

Query: 166 RKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDL 225
           + +G++P++ +YNS++ GLC       A  +L E +    +P+  T+ +L+   C E ++
Sbjct: 72  KAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCKEGNV 131

Query: 226 EKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTV 285
            +AR VL+ M            +  +    L     E   +   M+   C+PDV + N +
Sbjct: 132 FEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEARKLFDVMITKGCKPDVFSYNIL 191

Query: 286 INGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQR 345
           ING+CK  RI EA ++ N+M+      PD V++ T+I GL  +GR++EA + L++ M   
Sbjct: 192 INGYCKAKRIGEAKQLFNEMIHQGL-TPDIVSYNTLIDGLCQLGRLREAHD-LFKNMLTN 249

Query: 346 GYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA 405
           G  P + TY+ +L G  +   + +A  +F  M    +  +   Y I+ID +C+S  L EA
Sbjct: 250 GNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEA 309

Query: 406 KRFWDDI 412
           ++ + ++
Sbjct: 310 RKLFSEL 316



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/356 (25%), Positives = 163/356 (45%), Gaps = 42/356 (11%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M +RG+ P+V +YTT+I+G C+ GE   A  +F +M   G  P+ +TYS +         
Sbjct: 1   MVARGYQPDVHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTI--------- 51

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
                                          +DSLC++  VNE   I   M         
Sbjct: 52  -------------------------------IDSLCKDRRVNEALDIFSYMKAKGISPNI 80

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
           F    +I  LC   R   AS ++  M    + P++V+++ +++  CK G    A  +L+ 
Sbjct: 81  FTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKT 140

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
             + G  P+  TY  L+ G   ++++ +ARK+   M++K         NI +   C  K 
Sbjct: 141 MTEMGVEPNVVTYSSLMNGYSLQAEVFEARKLFDVMITKGCKPDVFSYNILINGYCKAKR 200

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
             E   +   M+     PD+++ NT+I+G C++GR+ EA  +  +M+      PD  T++
Sbjct: 201 IGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNG-NLPDLCTYS 259

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN 375
            ++ G    G + +A   L++ M      P +V YN ++  + + R ++EA+++F+
Sbjct: 260 ILLDGFCKQGYLAKAFR-LFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFS 314



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 137/279 (49%), Gaps = 5/279 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   RV EA  +F  MK++G  PN+ +Y +LI G C       A  + +EM    +
Sbjct: 52  IDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNI 111

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +PN +T+S+L+    +  +V  A  ++     +   E  +  N   +++L++    +  V
Sbjct: 112 MPNIVTFSLLINIFCKEGNVFEARGVL-----KTMTEMGVEPNVVTYSSLMNGYSLQAEV 166

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E  ++ + M       + F+   +I+  C++ R   A ++   M  +GLTP +VSYN++
Sbjct: 167 FEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTL 226

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GLC+ G    A+ L +  +  G LP   TY +L++G C +  L KA ++ + M S   
Sbjct: 227 IDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYL 286

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDV 279
                + NI + A+C  +N  E   +   +     QP++
Sbjct: 287 KPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQPNM 325



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 76/303 (25%), Positives = 140/303 (46%), Gaps = 8/303 (2%)

Query: 6   GLSRVGE---AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           GL ++GE   A  LF  M   G  P+VV+Y+T+I   C+   ++ A  +F  M+  G+ P
Sbjct: 19  GLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRRVNEALDIFSYMKAKGISP 78

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           N  TY+ L++G+        A+ ++ ++        ++  N   F+ L++  C+EG V E
Sbjct: 79  NIFTYNSLIQGLCNFSRWREASAMLNEMMSL-----NIMPNIVTFSLLINIFCKEGNVFE 133

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
              + + M +            +++          A ++  VM  +G  P + SYN +++
Sbjct: 134 ARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEARKLFDVMITKGCKPDVFSYNILIN 193

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           G CK      A QL  E I  G  P   +Y  L++GLC    L +A  + + ML+  ++ 
Sbjct: 194 GYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLP 253

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
                +I L   C      +   +   M  T  +P+++  N +I+  CK   ++EA K+ 
Sbjct: 254 DLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLF 313

Query: 303 NDM 305
           +++
Sbjct: 314 SEL 316



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 115/253 (45%), Gaps = 13/253 (5%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C    V EA  +   M   G  PNVV+Y++L++GY    E+  A K+FD M   G  P+
Sbjct: 125 FCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEARKLFDVMITKGCKPD 184

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             +Y++L+ G  + + +  A  L  ++       + L+ +  ++  L+D LC+ G + E 
Sbjct: 185 VFSYNILINGYCKAKRIGEAKQLFNEMIH-----QGLTPDIVSYNTLIDGLCQLGRLREA 239

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             + ++M    ++ +      ++D  C+ G    A R+   M+   L P++V YN ++  
Sbjct: 240 HDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDA 299

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           +CK      A +L  E    G  P+   +K+          +   R     MLS +D   
Sbjct: 300 MCKSRNLKEARKLFSELFVQGLQPNMKHWKLFEIW----KRMAALRMNFLIMLSSEDFFS 355

Query: 244 TRI----CNIYLR 252
           TR+    CN+ ++
Sbjct: 356 TRMNQGQCNLLVK 368



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 65/135 (48%)

Query: 377 MLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGK 436
           M+  G   D  TY  +I+GLC+  +   A   +  +       D   Y+ +I  LC+  +
Sbjct: 1   MVARGYQPDVHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRR 60

Query: 437 IHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRI 496
           ++EA+     +   G++PNI  YN +I G C  S  REA  +L EM    + P+ VT+ +
Sbjct: 61  VNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSL 120

Query: 497 LDKLHGNRGNDFGLR 511
           L  +    GN F  R
Sbjct: 121 LINIFCKEGNVFEAR 135



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 65/111 (58%), Gaps = 17/111 (15%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC L R+ EAH LF +M + G++P++ +Y+ L+ G+C+ G +  A+++F  M+   +
Sbjct: 227 IDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYL 286

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVL-----------------MFKLWERM 94
            PN + Y++L+  + ++R+++ A  L                 +F++W+RM
Sbjct: 287 KPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQPNMKHWKLFEIWKRM 337


>gi|255544732|ref|XP_002513427.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547335|gb|EEF48830.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 567

 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 126/489 (25%), Positives = 230/489 (47%), Gaps = 8/489 (1%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           R+ +A      +   GH P+VV  T L++  C++ +M  A +V + M  CG++P++ +Y+
Sbjct: 77  RISDAFFHLEHIVKNGHKPDVVQATQLLYDLCKSNKMKKAIRVMEMMISCGIIPDAASYT 136

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
            LV  + +  +V  A     +L E+M E+     N   +  LV  LC  G +N+  +  +
Sbjct: 137 FLVNHLCKRGNVGYA----MQLVEKM-EDSGYPANTVTYNTLVKGLCMHGNLNKSLQFLD 191

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
            + Q   V   F    ++++  +    + A R++  +  +G  P+LVSYN ++ GLCK G
Sbjct: 192 RLMQKGLVPNAFTYSSLLEAAYKERGVNEAMRLLDEIIAKGGQPNLVSYNVLLTGLCKEG 251

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
               A +L +     G+ P+  +Y +L+  LC E   E+A ++L  M  ++        N
Sbjct: 252 RIEEAIRLFKNLPSKGFSPNVVSYNILLRSLCYEGRWEEANELLAEMNGRERSPSIVTYN 311

Query: 249 IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 308
           I + +L       + L V+  M+    +P   + N +I   CK G++E  +  L+ M+ G
Sbjct: 312 ILIGSLAFHGKIEQALQVIDEMMMGPFKPTATSYNPIIARLCKEGKVEAVVNCLDQMIFG 371

Query: 309 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE 368
           + C+P+  TF  I   L   G++QEA +L+ Q +  +  S     Y  V+  L +     
Sbjct: 372 R-CSPNEGTFNAIAV-LCYEGKVQEAFSLI-QSLGNKQNSSIHDYYKGVVSCLCKKGNTY 428

Query: 369 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI 428
            A  +   M   G   DS TY+ +I GLC    L EA   +  +       D   + A+I
Sbjct: 429 PAFLLLYEMTKYGFTPDSYTYSSLIRGLCIEGMLYEAMEIFKLLEEDHYRPDIDNFNALI 488

Query: 429 KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLN 488
            G C+S +   ++     +++ G TP+   Y ++++G      K  A ++LRE+    + 
Sbjct: 489 LGFCKSHRTDLSLEVFEMMIEKGYTPSETTYTILVEGIIHEEEKELAAEVLRELHLRQVM 548

Query: 489 PDAVTWRIL 497
             +   R++
Sbjct: 549 SQSTVERLI 557



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 105/405 (25%), Positives = 194/405 (47%), Gaps = 8/405 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC    VG A +L   M+  G+  N V+Y TL+ G C  G ++ + +  D +   G+
Sbjct: 139 VNHLCKRGNVGYAMQLVEKMEDSGYPANTVTYNTLVKGLCMHGNLNKSLQFLDRLMQKGL 198

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +PN+ TYS L+    + R V  A  L+ ++  +  +   +S N      L+  LC+EG +
Sbjct: 199 VPNAFTYSSLLEAAYKERGVNEAMRLLDEIIAKGGQPNLVSYN-----VLLTGLCKEGRI 253

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E  R+ +++P         +   ++ SLC  GR   A+ ++  M  R  +PS+V+YN +
Sbjct: 254 EEAIRLFKNLPSKGFSPNVVSYNILLRSLCYEGRWEEANELLAEMNGRERSPSIVTYNIL 313

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +  L  HG   +A Q+++E +   + P+  +Y  ++  LC E  +E     L  M+  + 
Sbjct: 314 IGSLAFHGKIEQALQVIDEMMMGPFKPTATSYNPIIARLCKEGKVEAVVNCLDQMIFGRC 373

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                  N  +  LC      E  +++  +   Q          V++  CK G    A  
Sbjct: 374 SPNEGTFNA-IAVLCYEGKVQEAFSLIQSLGNKQNSSIHDYYKGVVSCLCKKGNTYPAFL 432

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +L +M    F  PD+ T++++I GL   G + EA+  +++++ +  Y P I  +NA++ G
Sbjct: 433 LLYEMTKYGF-TPDSYTYSSLIRGLCIEGMLYEAME-IFKLLEEDHYRPDIDNFNALILG 490

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA 405
             +  R + + EVF  M+  G     TTY I+++G+    + + A
Sbjct: 491 FCKSHRTDLSLEVFEMMIEKGYTPSETTYTILVEGIIHEEEKELA 535



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 51/90 (56%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC    + EA ++F  ++   + P++ ++  LI G+C++   D++ +VF+ M   G  P+
Sbjct: 456 LCIEGMLYEAMEIFKLLEEDHYRPDIDNFNALILGFCKSHRTDLSLEVFEMMIEKGYTPS 515

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWER 93
             TY++LV G++   + E A  ++ +L  R
Sbjct: 516 ETTYTILVEGIIHEEEKELAAEVLRELHLR 545



 Score = 43.5 bits (101), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 3/80 (3%)

Query: 427 MIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG 486
           ++  LC+S K+ +A+  +  ++  G+ P+   Y  +++  CK      A Q++ +M  +G
Sbjct: 103 LLYDLCKSNKMKKAIRVMEMMISCGIIPDAASYTFLVNHLCKRGNVGYAMQLVEKMEDSG 162

Query: 487 LNPDAVTWRILDK---LHGN 503
              + VT+  L K   +HGN
Sbjct: 163 YPANTVTYNTLVKGLCMHGN 182


>gi|357499981|ref|XP_003620279.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495294|gb|AES76497.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 585

 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 117/472 (24%), Positives = 215/472 (45%), Gaps = 61/472 (12%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTG----EMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVL 75
           M+ RG  PN+ +   LI+ +C+ G    ++  A+   D++   G   + ++Y  L+ G+ 
Sbjct: 112 MEFRGIKPNLFNCNILIYCFCQLGLIPCQIHQAFLFHDKLVALGFHLDQVSYGTLIHGLC 171

Query: 76  RTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKS 135
           +  +   A      L +R+ + + + +N   +  ++  +C++ +VN+ F +  +M     
Sbjct: 172 KVGETRAA----LDLLQRV-DGKLVQLNAVMYNTVIYGMCKDKHVNDAFDLYSEM----- 221

Query: 136 VNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQ 195
                                           +G++P++V+Y++++ G    G    A  
Sbjct: 222 ------------------------------VSKGISPNVVTYSALISGFFVVGKLKDAID 251

Query: 196 LLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALC 255
           L  + I     P  +T+ +LV+G C +  +++ + V   M+ +  +      N  +   C
Sbjct: 252 LFNKIILENIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTYNSLMDGYC 311

Query: 256 LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA 315
           L+K      ++   M Q    PD+ + N +INGFCK+ ++++A+ + N+M   K   P+ 
Sbjct: 312 LVKEVNTAKSIFNTMAQGGVNPDIRSYNILINGFCKIKKVDKAMNLFNEMHC-KNIIPNV 370

Query: 316 VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN 375
           VT+ ++I GL   GRI  AL L+ Q M  RG  P I+TYN+++  LF+  +V++A  +  
Sbjct: 371 VTYNSLIDGLSKSGRISYALQLVDQ-MHDRGVPPNILTYNSIIDALFKTHQVDKAIALIT 429

Query: 376 CMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG 435
                G+     TY I+IDGLC+    D                    Y  MI G C+ G
Sbjct: 430 KFKDQGIQPSMYTYTILIDGLCKVEGYDITVN---------------TYNVMIHGFCKKG 474

Query: 436 KIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
              EA+  L ++ DS   PN V Y + I      +   +A ++ REM   GL
Sbjct: 475 LFDEALSLLSKMKDSSCIPNAVTYEITIRSLLDNNENDKAEKLFREMITRGL 526



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 94/362 (25%), Positives = 186/362 (51%), Gaps = 6/362 (1%)

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG--GCM--RAYQ 195
           F    ++ SL +S   H    +   M  RG+ P+L + N +++  C+ G   C   +A+ 
Sbjct: 87  FEFNKILGSLVKSKHYHTVLSLSQKMEFRGIKPNLFNCNILIYCFCQLGLIPCQIHQAFL 146

Query: 196 LLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALC 255
             ++ +  G+   + +Y  L+ GLC   +   A  +LQ +  K       + N  +  +C
Sbjct: 147 FHDKLVALGFHLDQVSYGTLIHGLCKVGETRAALDLLQRVDGKLVQLNAVMYNTVIYGMC 206

Query: 256 LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA 315
             K+  +  ++   M+     P+V+T + +I+GF  +G++++A+ + N ++      PD 
Sbjct: 207 KDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFVVGKLKDAIDLFNKIILENI-KPDG 265

Query: 316 VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN 375
            TF  ++ G     +++E    ++ +M ++G  P +VTYN+++ G   ++ V  AK +FN
Sbjct: 266 YTFNILVDGFCKDRKMKEG-KTVFAMMMKQGIIPDVVTYNSLMDGYCLVKEVNTAKSIFN 324

Query: 376 CMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG 435
            M   GV  D  +Y I+I+G C+  ++D+A   ++++   + I +   Y ++I GL +SG
Sbjct: 325 TMAQGGVNPDIRSYNILINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSLIDGLSKSG 384

Query: 436 KIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWR 495
           +I  A+  + ++ D GV PNI+ YN +ID   K     +A  ++ + +  G+ P   T+ 
Sbjct: 385 RISYALQLVDQMHDRGVPPNILTYNSIIDALFKTHQVDKAIALITKFKDQGIQPSMYTYT 444

Query: 496 IL 497
           IL
Sbjct: 445 IL 446



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 114/489 (23%), Positives = 221/489 (45%), Gaps = 35/489 (7%)

Query: 28  NVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLM 87
           N +SY++    +    ++D A  +F+ +      P +  ++ ++  +++++       L 
Sbjct: 50  NFISYSSTSTTFHSNNDVDDAVSLFNRLLRQNPTPPAFEFNKILGSLVKSKHYHTVLSLS 109

Query: 88  FKLWERMKEEEDLSVNNAAFANLVDSLCREGYV----NEVFRIAEDMPQGKSVNEEFACG 143
            K+  R  +    + N      L+   C+ G +    ++ F   + +       ++ + G
Sbjct: 110 QKMEFRGIKPNLFNCNI-----LIYCFCQLGLIPCQIHQAFLFHDKLVALGFHLDQVSYG 164

Query: 144 HMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQF 203
            +I  LC+ G    A  ++  +  + +  + V YN++++G+CK      A+ L  E +  
Sbjct: 165 TLIHGLCKVGETRAALDLLQRVDGKLVQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSK 224

Query: 204 GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTEL 263
           G  P+  TY  L+ G      L+ A  +   ++ +         NI +   C  +   E 
Sbjct: 225 GISPNVVTYSALISGFFVVGKLKDAIDLFNKIILENIKPDGYTFNILVDGFCKDRKMKEG 284

Query: 264 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF 323
             V   M++    PDV+T N++++G+C +  +  A  + N M  G    PD  ++  +I 
Sbjct: 285 KTVFAMMMKQGIIPDVVTYNSLMDGYCLVKEVNTAKSIFNTMAQGG-VNPDIRSYNILIN 343

Query: 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 383
           G   + ++ +A+NL +  M  +   P +VTYN+++ GL +  R+  A ++ + M   GV 
Sbjct: 344 GFCKIKKVDKAMNL-FNEMHCKNIIPNVVTYNSLIDGLSKSGRISYALQLVDQMHDRGVP 402

Query: 384 ADSTTYAIVIDGLCESNQLDEA----KRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
            +  TY  +ID L +++Q+D+A     +F D  + PS     Y Y  +I GLC+      
Sbjct: 403 PNILTYNSIIDALFKTHQVDKAIALITKFKDQGIQPSM----YTYTILIDGLCKV----- 453

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRI-LD 498
                      G    +  YNV+I G CK  +  EA  +L +M+ +   P+AVT+ I + 
Sbjct: 454 ----------EGYDITVNTYNVMIHGFCKKGLFDEALSLLSKMKDSSCIPNAVTYEITIR 503

Query: 499 KLHGNRGND 507
            L  N  ND
Sbjct: 504 SLLDNNEND 512



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 87/343 (25%), Positives = 158/343 (46%), Gaps = 22/343 (6%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           +C    V +A  L+ +M S+G  PNVV+Y+ LI G+   G++  A  +F+++    + P+
Sbjct: 205 MCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFVVGKLKDAIDLFNKIILENIKPD 264

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             T+++LV G  + R ++    +       M  ++ +  +   + +L+D  C    VN  
Sbjct: 265 GYTFNILVDGFCKDRKMKEGKTVF-----AMMMKQGIIPDVVTYNSLMDGYCLVKEVNTA 319

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             I   M QG    +  +   +I+  C+  +   A  +   M  + + P++V+YNS++ G
Sbjct: 320 KSIFNTMAQGGVNPDIRSYNILINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSLIDG 379

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           L K G    A QL+++    G  P+  TY  +++ L     ++KA  ++     +     
Sbjct: 380 LSKSGRISYALQLVDQMHDRGVPPNILTYNSIIDALFKTHQVDKAIALITKFKDQGIQPS 439

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                I +  LC ++     +N               T N +I+GFCK G  +EAL +L+
Sbjct: 440 MYTYTILIDGLCKVEGYDITVN---------------TYNVMIHGFCKKGLFDEALSLLS 484

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
            M     C P+AVT+   I  LL+     +A   L++ M  RG
Sbjct: 485 KMKDSS-CIPNAVTYEITIRSLLDNNENDKA-EKLFREMITRG 525



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 61/264 (23%), Positives = 129/264 (48%), Gaps = 25/264 (9%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C   ++ E   +F  M  +G +P+VV+Y +L+ GYC   E++ A  +F+ M   GV
Sbjct: 272 VDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTYNSLMDGYCLVKEVNTAKSIFNTMAQGGV 331

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+  +Y++L+ G  + + V++A      L+  M   +++  N   + +L+D L + G +
Sbjct: 332 NPDIRSYNILINGFCKIKKVDKA----MNLFNEM-HCKNIIPNVVTYNSLIDGLSKSGRI 386

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +   ++ + M              +ID+L ++ +   A  ++   + +G+ PS+ +Y  +
Sbjct: 387 SYALQLVDQMHDRGVPPNILTYNSIIDALFKTHQVDKAIALITKFKDQGIQPSMYTYTIL 446

Query: 181 VHGLCK---------------HGGCMR-----AYQLLEEGIQFGYLPSEHTYKVLVEGLC 220
           + GLCK               HG C +     A  LL +      +P+  TY++ +  L 
Sbjct: 447 IDGLCKVEGYDITVNTYNVMIHGFCKKGLFDEALSLLSKMKDSSCIPNAVTYEITIRSLL 506

Query: 221 GESDLEKARKVLQFMLSKKDVDRT 244
             ++ +KA K+ + M+++  ++R+
Sbjct: 507 DNNENDKAEKLFREMITRGLLNRS 530



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 100/213 (46%), Gaps = 22/213 (10%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C + +V +A  LF +M  +  +PNVV+Y +LI G  ++G +  A ++ D+M   GV
Sbjct: 342 INGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSLIDGLSKSGRISYALQLVDQMHDRGV 401

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCR-EGY 119
            PN LTY+ ++  + +T  V++A  L+ K      +++ +  +   +  L+D LC+ EGY
Sbjct: 402 PPNILTYNSIIDALFKTHQVDKAIALITKF-----KDQGIQPSMYTYTILIDGLCKVEGY 456

Query: 120 VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
                          +VN       MI   C+ G    A  ++  M+     P+ V+Y  
Sbjct: 457 -------------DITVN---TYNVMIHGFCKKGLFDEALSLLSKMKDSSCIPNAVTYEI 500

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTY 212
            +  L  +    +A +L  E I  G L    +Y
Sbjct: 501 TIRSLLDNNENDKAEKLFREMITRGLLNRSASY 533


>gi|297816792|ref|XP_002876279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297322117|gb|EFH52538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 125/517 (24%), Positives = 240/517 (46%), Gaps = 48/517 (9%)

Query: 19  DMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTR 78
           +M S G   NVV+ T+LI G+C+  ++  A  +F +M + G  PNS+T+SVL+    +  
Sbjct: 328 EMVSDGISMNVVAATSLITGHCKNNDLGSALDLFYKMENEGPSPNSVTFSVLIERFSKNG 387

Query: 79  DVERANVLMFKLWERMKEEEDLSVNNAAFA--NLVDSLCREGYVNEVFRIAEDMPQGKSV 136
           ++E+A        E  K+ E L +  + F    ++    +     E  ++ ++  +    
Sbjct: 388 EMEKA-------LEFYKKMESLGLTPSVFHVHTIIQGWLKGQKHEEALKLFDESFETGLA 440

Query: 137 NEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQL 196
           N  F C  ++  LC+ G+   A+ ++  M  RG+ P++VSYN+++   C+      A  +
Sbjct: 441 NV-FICNTILSWLCKQGKIDKATELLRKMESRGIGPNVVSYNNVMLAHCRKKNMDLARTV 499

Query: 197 LEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCL 256
               ++ G  P+ +TY +L++G     D +   +V+  M S        +    +  LC 
Sbjct: 500 FSNMLEKGLKPNNYTYSILIDGCFKNHDEQNVLEVVNQMTSSNIEVNGVVYQTIINGLCK 559

Query: 257 IKNPTELLNVLVFMLQTQ--CQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPD 314
           +   ++   +L  M++ +  C    ++ N++I+GF K G ++ A+    +M A    +P+
Sbjct: 560 VGQTSKARELLANMIEEKRFCV-SCMSYNSIIDGFIKEGEMDYAVAAYEEMCANGI-SPN 617

Query: 315 AVTFTTIIFGLLNVGRIQEALNL----------------------------------LYQ 340
            +T+T+++ GL    R+ +AL +                                  L+ 
Sbjct: 618 VITYTSLMDGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIHGFCKKSNMESASALFS 677

Query: 341 VMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN 400
            + + G +P    YN+++ G   L  +  A +++  ML  G+  D  TY  +IDGL +  
Sbjct: 678 ELLEEGLNPSQPVYNSLISGFRNLGNMVAALDLYKKMLKDGLRCDLGTYTTLIDGLLKEG 737

Query: 401 QLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYN 460
            L  A   + ++     + D  +Y  ++ GL + G+  + V    E+  + VTPN++ YN
Sbjct: 738 NLILASDLYTEMQAVGLVPDEIMYTVIVNGLSKKGQFVKVVKMFEEMKKNNVTPNVLIYN 797

Query: 461 VVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            VI G  +     EA+++  EM   G+ PD  T+ IL
Sbjct: 798 AVIAGHYREGNLDEAFRLHDEMLDKGILPDGATFDIL 834



 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 105/393 (26%), Positives = 195/393 (49%), Gaps = 8/393 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   ++ +A +L   M+SRG  PNVVSY  ++  +CR   MD+A  VF  M   G+ PN
Sbjct: 452 LCKQGKIDKATELLRKMESRGIGPNVVSYNNVMLAHCRKKNMDLARTVFSNMLEKGLKPN 511

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           + TYS+L+ G  +  D +  NVL  ++  +M    ++ VN   +  +++ LC+ G  ++ 
Sbjct: 512 NYTYSILIDGCFKNHDEQ--NVL--EVVNQMT-SSNIEVNGVVYQTIINGLCKVGQTSKA 566

Query: 124 FRIAEDMPQGKSVNEE-FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
             +  +M + K       +   +ID   + G    A      M   G++P++++Y S++ 
Sbjct: 567 RELLANMIEEKRFCVSCMSYNSIIDGFIKEGEMDYAVAAYEEMCANGISPNVITYTSLMD 626

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           GLCK+    +A ++ +E    G       Y  L+ G C +S++E A  +   +L +    
Sbjct: 627 GLCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIHGFCKKSNMESASALFSELLEEGLNP 686

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
              + N  +     + N    L++   ML+   + D+ T  T+I+G  K G +  A  + 
Sbjct: 687 SQPVYNSLISGFRNLGNMVAALDLYKKMLKDGLRCDLGTYTTLIDGLLKEGNLILASDLY 746

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
            +M A     PD + +T I+ GL   G+  + +  +++ M +   +P ++ YNAV+ G +
Sbjct: 747 TEMQAVGLV-PDEIMYTVIVNGLSKKGQFVKVVK-MFEEMKKNNVTPNVLIYNAVIAGHY 804

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG 395
           R   ++EA  + + ML  G++ D  T+ I++ G
Sbjct: 805 REGNLDEAFRLHDEMLDKGILPDGATFDILVSG 837



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 120/512 (23%), Positives = 231/512 (45%), Gaps = 18/512 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +  L   + + EA +L+  M + G   +  +   L+    R  +   A +VF      G 
Sbjct: 204 LSALVQRNSITEAKELYSRMVAIGVDGDNGTTQLLMRASLREEKPAEALEVFSRAIERGA 263

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+SL YS+ V+   +T ++  AN L+      MKE++    +   + +++ +  ++G +
Sbjct: 264 EPDSLLYSLAVQACCKTLNLAMANSLL----REMKEKKLCVPSQETYTSVILASVKQGNM 319

Query: 121 NEVFRIAEDM-PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
            +  R  ++M   G S+N   A   +I   C++     A  + Y M   G +P+ V+++ 
Sbjct: 320 EDAIRWKDEMVSDGISMNV-VAATSLITGHCKNNDLGSALDLFYKMENEGPSPNSVTFSV 378

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++    K+G   +A +  ++    G  PS      +++G       E+A K+      + 
Sbjct: 379 LIERFSKNGEMEKALEFYKKMESLGLTPSVFHVHTIIQGWLKGQKHEEALKLFDESF-ET 437

Query: 240 DVDRTRICNIYLRALCL---IKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIE 296
            +    ICN  L  LC    I   TELL     M      P+V++ N V+   C+   ++
Sbjct: 438 GLANVFICNTILSWLCKQGKIDKATELLRK---MESRGIGPNVVSYNNVMLAHCRKKNMD 494

Query: 297 EALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
            A  V ++M+  K   P+  T++ +I G       Q  L ++ Q+        G+V Y  
Sbjct: 495 LARTVFSNMLE-KGLKPNNYTYSILIDGCFKNHDEQNVLEVVNQMTSSNIEVNGVV-YQT 552

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADS-TTYAIVIDGLCESNQLDEAKRFWDDIVWP 415
           ++ GL ++ +  +A+E+   M+       S  +Y  +IDG  +  ++D A   ++++   
Sbjct: 553 IINGLCKVGQTSKARELLANMIEEKRFCVSCMSYNSIIDGFIKEGEMDYAVAAYEEMC-A 611

Query: 416 SNIHDNYV-YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKRE 474
           + I  N + Y +++ GLC++ ++ +A+    E+ + GV  +I  Y  +I G CK S    
Sbjct: 612 NGISPNVITYTSLMDGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIHGFCKKSNMES 671

Query: 475 AYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           A  +  E+ + GLNP    +  L     N GN
Sbjct: 672 ASALFSELLEEGLNPSQPVYNSLISGFRNLGN 703



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 115/222 (51%), Gaps = 5/222 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           MD LC  +R+ +A ++  +MK++G   ++ +Y  LIHG+C+   M+ A  +F E+   G+
Sbjct: 625 MDGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIHGFCKKSNMESASALFSELLEEGL 684

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+   Y+ L+ G     ++    V    L+++M ++  L  +   +  L+D L +EG +
Sbjct: 685 NPSQPVYNSLISGFRNLGNM----VAALDLYKKMLKD-GLRCDLGTYTTLIDGLLKEGNL 739

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                +  +M     V +E     +++ L + G+     ++   M+K  +TP+++ YN++
Sbjct: 740 ILASDLYTEMQAVGLVPDEIMYTVIVNGLSKKGQFVKVVKMFEEMKKNNVTPNVLIYNAV 799

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGE 222
           + G  + G    A++L +E +  G LP   T+ +LV G  G+
Sbjct: 800 IAGHYREGNLDEAFRLHDEMLDKGILPDGATFDILVSGKVGK 841



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/248 (22%), Positives = 109/248 (43%), Gaps = 5/248 (2%)

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
           +R  N  L A    +     ++++  ML+    P V  +N  ++   +   I EA ++ +
Sbjct: 162 SRAFNYLLNAYSKDRQTDYAVDIVNQMLELGVIPFVPYVNRTLSALVQRNSITEAKELYS 221

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            MVA      +  T   ++   L   +  EAL +  + + +RG  P  + Y+  ++   +
Sbjct: 222 RMVAIGVDGDNGTT-QLLMRASLREEKPAEALEVFSRAI-ERGAEPDSLLYSLAVQACCK 279

Query: 364 LRRVEEAKEVFNCMLGIGV-VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
              +  A  +   M    + V    TY  VI    +   +++A R W D +    I  N 
Sbjct: 280 TLNLAMANSLLREMKEKKLCVPSQETYTSVILASVKQGNMEDAIR-WKDEMVSDGISMNV 338

Query: 423 VYA-AMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
           V A ++I G C++  +  A+   Y++ + G +PN V ++V+I+   K     +A +  ++
Sbjct: 339 VAATSLITGHCKNNDLGSALDLFYKMENEGPSPNSVTFSVLIERFSKNGEMEKALEFYKK 398

Query: 482 MRKNGLNP 489
           M   GL P
Sbjct: 399 MESLGLTP 406



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/200 (20%), Positives = 85/200 (42%), Gaps = 37/200 (18%)

Query: 334 ALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVI 393
           A++++ Q++ + G  P +   N  L  L +   + EAKE+++ M+ IGV  D+ T  +++
Sbjct: 181 AVDIVNQML-ELGVIPFVPYVNRTLSALVQRNSITEAKELYSRMVAIGVDGDNGTTQLLM 239

Query: 394 DGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRS------------------- 434
                  +  EA   +   +      D+ +Y+  ++  C++                   
Sbjct: 240 RASLREEKPAEALEVFSRAIERGAEPDSLLYSLAVQACCKTLNLAMANSLLREMKEKKLC 299

Query: 435 -----------------GKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQ 477
                            G + +A+ +  E+V  G++ N+V    +I G CK +    A  
Sbjct: 300 VPSQETYTSVILASVKQGNMEDAIRWKDEMVSDGISMNVVAATSLITGHCKNNDLGSALD 359

Query: 478 ILREMRKNGLNPDAVTWRIL 497
           +  +M   G +P++VT+ +L
Sbjct: 360 LFYKMENEGPSPNSVTFSVL 379



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/142 (23%), Positives = 62/142 (43%)

Query: 346 GYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA 405
           G+      +N +L    + R+ + A ++ N ML +GV+         +  L + N + EA
Sbjct: 157 GFEVNSRAFNYLLNAYSKDRQTDYAVDIVNQMLELGVIPFVPYVNRTLSALVQRNSITEA 216

Query: 406 KRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDG 465
           K  +  +V      DN     +++   R  K  EA+      ++ G  P+ + Y++ +  
Sbjct: 217 KELYSRMVAIGVDGDNGTTQLLMRASLREEKPAEALEVFSRAIERGAEPDSLLYSLAVQA 276

Query: 466 ACKLSMKREAYQILREMRKNGL 487
            CK      A  +LREM++  L
Sbjct: 277 CCKTLNLAMANSLLREMKEKKL 298


>gi|225453062|ref|XP_002266822.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Vitis vinifera]
          Length = 582

 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 117/463 (25%), Positives = 217/463 (46%), Gaps = 8/463 (1%)

Query: 35  LIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERM 94
           L++  C+ G+ + +    + + + G  P+ +  + L++G    +++E+A+ +M  L    
Sbjct: 74  LLNRSCKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVMEILESHT 133

Query: 95  KEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGR 154
             E D+   NA    ++   C+   +    ++   M     + +      MI SLC   +
Sbjct: 134 --EPDVFAYNA----VISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRK 187

Query: 155 NHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKV 214
              A +V+  +      P++++Y  ++      GG   A +LLEE +  G LP  +TY  
Sbjct: 188 LGLALKVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNA 247

Query: 215 LVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQ 274
           ++ G+C E  +E+A +++  + SK         NI LRA        E   ++  M    
Sbjct: 248 IIRGMCKEGMVERAAELITSLTSKGCKPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRG 307

Query: 275 CQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEA 334
           C+P+ +T + +I+  C+ GRI+EA+ VL  M+  +   PD  ++  +I  L   GR+  A
Sbjct: 308 CEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKEL-TPDTYSYDPLISALCKEGRLDLA 366

Query: 335 LNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVID 394
           + ++   M   G  P IV YN +L  L +     +A E+FN + G+G   + ++Y  +I 
Sbjct: 367 IGIM-DYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMIS 425

Query: 395 GLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTP 454
            L        A      ++      D   Y ++I  LCR G + EA+  L ++  SG  P
Sbjct: 426 ALWSCGDRSRALGMVPAMISKGVDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRP 485

Query: 455 NIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            ++ YN+V+ G CK+    +A  +  EM + G  P+  T+ +L
Sbjct: 486 TVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETTYILL 528



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 106/431 (24%), Positives = 207/431 (48%), Gaps = 17/431 (3%)

Query: 27  PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVL 86
           P+V +Y  +I G+C+   ++ A +V + M+  G LP+ +TY++++  +   R        
Sbjct: 135 PDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRR-------- 186

Query: 87  MFKLWERMKEEEDLSVNNA-----AFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFA 141
             KL   +K  + L ++N       +  L+++   EG +NE  ++ E+M     + + + 
Sbjct: 187 --KLGLALKVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYT 244

Query: 142 CGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGI 201
              +I  +C+ G    A+ ++  +  +G  P ++SYN ++      G      +L+ E  
Sbjct: 245 YNAIIRGMCKEGMVERAAELITSLTSKGCKPDVISYNILLRAFLNQGKWDEGEKLVAEMF 304

Query: 202 QFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPT 261
             G  P++ TY +L+  LC    +++A  VL+ M+ K+    T   +  + ALC      
Sbjct: 305 SRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLD 364

Query: 262 ELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTI 321
             + ++ +M+   C PD++  NT++   CK G   +AL++ N +  G  C P+  ++ T+
Sbjct: 365 LAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKL-RGMGCPPNVSSYNTM 423

Query: 322 IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG 381
           I  L + G    AL ++   M  +G  P  +TYN+++  L R   VEEA  + + M   G
Sbjct: 424 ISALWSCGDRSRALGMV-PAMISKGVDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSG 482

Query: 382 VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAV 441
                 +Y IV+ GLC+  ++D+A   + +++      +   Y  +I+G+  +G   EA+
Sbjct: 483 FRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIEGIGFAGWRTEAM 542

Query: 442 HFLYELVDSGV 452
                L    V
Sbjct: 543 ELANSLFSRDV 553



 Score =  161 bits (408), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 105/396 (26%), Positives = 195/396 (49%), Gaps = 13/396 (3%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C ++R+  A ++   MK+RG +P++V+Y  +I   C   ++ +A KV D++     +P 
Sbjct: 147 FCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALKVLDQLLLDNCMPT 206

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEE---EDLSVNNAAFANLVDSLCREGYV 120
            +TY++L+   +    +  A     KL E M       D+   NA    ++  +C+EG V
Sbjct: 207 VITYTILIEATIVEGGINEA----MKLLEEMLARGLLPDMYTYNA----IIRGMCKEGMV 258

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                +   +       +  +   ++ +    G+     ++V  M  RG  P+ V+Y+ +
Sbjct: 259 ERAAELITSLTSKGCKPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSIL 318

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +  LC+ G    A  +L+  I+    P  ++Y  L+  LC E  L+ A  ++ +M+S   
Sbjct: 319 ISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGC 378

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           +      N  L ALC   N  + L +   +    C P+V + NT+I+     G    AL 
Sbjct: 379 LPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALG 438

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           ++  M++ K   PD +T+ ++I  L   G ++EA+ LL   M Q G+ P +++YN VL G
Sbjct: 439 MVPAMIS-KGVDPDEITYNSLISCLCRDGLVEEAIGLLDD-MEQSGFRPTVISYNIVLLG 496

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 396
           L ++RR+++A  +F  M+  G   + TTY ++I+G+
Sbjct: 497 LCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIEGI 532



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 102/385 (26%), Positives = 183/385 (47%), Gaps = 7/385 (1%)

Query: 3   QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
            LC   ++G A K+   +     +P V++YT LI      G ++ A K+ +EM   G+LP
Sbjct: 181 SLCNRRKLGLALKVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLP 240

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           +  TY+ ++RG+ +   VERA  L+  L  +  + + +S N      L+ +   +G  +E
Sbjct: 241 DMYTYNAIIRGMCKEGMVERAAELITSLTSKGCKPDVISYN-----ILLRAFLNQGKWDE 295

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
             ++  +M        +     +I SLCR GR   A  V+ VM ++ LTP   SY+ ++ 
Sbjct: 296 GEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLIS 355

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
            LCK G    A  +++  I  G LP    Y  ++  LC   +  +A ++   +       
Sbjct: 356 ALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPP 415

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
                N  + AL    + +  L ++  M+     PD IT N++I+  C+ G +EEA+ +L
Sbjct: 416 NVSSYNTMISALWSCGDRSRALGMVPAMISKGVDPDEITYNSLISCLCRDGLVEEAIGLL 475

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
           +DM    F  P  +++  ++ GL  V RI +A+ +  + M ++G  P   TY  ++ G+ 
Sbjct: 476 DDMEQSGF-RPTVISYNIVLLGLCKVRRIDDAIGMFAE-MIEKGCRPNETTYILLIEGIG 533

Query: 363 RLRRVEEAKEVFNCMLGIGVVADST 387
                 EA E+ N +    V++  +
Sbjct: 534 FAGWRTEAMELANSLFSRDVISQDS 558



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 85/354 (24%), Positives = 158/354 (44%), Gaps = 40/354 (11%)

Query: 10  VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSV 69
           + EA KL  +M +RG +P++ +Y  +I G C+ G ++ A ++   +   G  P+ ++Y++
Sbjct: 223 INEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCKPDVISYNI 282

Query: 70  LVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAED 129
           L+R  L     +    L+ +++ R  E      N   ++ L+ SLCR G ++E   + + 
Sbjct: 283 LLRAFLNQGKWDEGEKLVAEMFSRGCEP-----NKVTYSILISSLCRFGRIDEAISVLKV 337

Query: 130 MPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG- 188
           M + +   + ++   +I +LC+ GR   A  ++  M   G  P +V+YN+I+  LCK+G 
Sbjct: 338 MIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGN 397

Query: 189 --------------GC--------------------MRAYQLLEEGIQFGYLPSEHTYKV 214
                         GC                     RA  ++   I  G  P E TY  
Sbjct: 398 ANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGVDPDEITYNS 457

Query: 215 LVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQ 274
           L+  LC +  +E+A  +L  M            NI L  LC ++   + + +   M++  
Sbjct: 458 LISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKG 517

Query: 275 CQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNV 328
           C+P+  T   +I G    G   EA+++ N + +    + D+       F +L+V
Sbjct: 518 CRPNETTYILLIEGIGFAGWRTEAMELANSLFSRDVISQDSFKRLNKTFPMLDV 571



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/224 (29%), Positives = 112/224 (50%), Gaps = 3/224 (1%)

Query: 282 LNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQV 341
           L  ++N  CK G+  E+L  L  +V   +  PD +  T +I G  N   I++A  ++  +
Sbjct: 71  LMKLLNRSCKAGKFNESLYFLECLVNKGY-TPDVILCTKLIKGFFNFKNIEKASRVMEIL 129

Query: 342 MPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ 401
             +    P +  YNAV+ G  ++ R+E A +V N M   G + D  TY I+I  LC   +
Sbjct: 130 --ESHTEPDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRK 187

Query: 402 LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNV 461
           L  A +  D ++  + +     Y  +I+     G I+EA+  L E++  G+ P++  YN 
Sbjct: 188 LGLALKVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNA 247

Query: 462 VIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
           +I G CK  M   A +++  +   G  PD +++ IL +   N+G
Sbjct: 248 IIRGMCKEGMVERAAELITSLTSKGCKPDVISYNILLRAFLNQG 291



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 99/219 (45%), Gaps = 5/219 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +  LC   R+ EA  +   M  +   P+  SY  LI   C+ G +D+A  + D M   G 
Sbjct: 319 ISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGC 378

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           LP+ + Y+ ++  + +  +  +A  +  KL            N +++  ++ +L   G  
Sbjct: 379 LPDIVNYNTILAALCKNGNANQALEIFNKL-----RGMGCPPNVSSYNTMISALWSCGDR 433

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +    +   M       +E     +I  LCR G    A  ++  M + G  P+++SYN +
Sbjct: 434 SRALGMVPAMISKGVDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIV 493

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGL 219
           + GLCK      A  +  E I+ G  P+E TY +L+EG+
Sbjct: 494 LLGLCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIEGI 532


>gi|449444222|ref|XP_004139874.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
 gi|449492651|ref|XP_004159061.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
          Length = 588

 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 119/446 (26%), Positives = 208/446 (46%), Gaps = 42/446 (9%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC ++R+ E       +  RG++P+VV++TTLI G C    +  A K+F  M+  G  PN
Sbjct: 136 LCNVNRINEGLAAMAGIMRRGYIPDVVTFTTLIKGLCVEHRIIEATKLFMRMQKLGCTPN 195

Query: 64  SLTYSVLVRGVLRTRDVE--------------------RANVLMFKL----------WER 93
            +TY  L++G+    ++                     R NV+ + +          WE 
Sbjct: 196 VVTYGTLIKGLCALGNINIALKWHQEMLNDTSPYVFNCRPNVISYSIIIDGLCKVGNWEE 255

Query: 94  ----MKEEEDLSV--NNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMID 147
                 E  D  V  N   F+ L+D LC+EG V +  ++ E M Q   V   F    +I 
Sbjct: 256 AICLFNEMVDQGVQPNVVTFSVLIDMLCKEGQVIKAKKLLEMMIQIGIVPNLFTYTSLIK 315

Query: 148 SLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLP 207
             C  G  + A  +   M  +G  P ++SYN +++G CK      A +L  E +  G  P
Sbjct: 316 GFCLVGDLNSAKELFVSMPSKGYEPDVISYNMLINGYCKTLKVEEAMKLFNEMLHVGMWP 375

Query: 208 SEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVL 267
              T  VL++ L     ++ A+++ + +          IC I+L  LC      E + + 
Sbjct: 376 DVKTSGVLLKALFLAGKVDDAKELFRVIKPYAMPKDLCICCIFLDGLCKNGYIFEAMKLF 435

Query: 268 VFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLN 327
             +     + D+ T   +I+G CK G++E A ++   +       PDA+ ++++I G   
Sbjct: 436 NELESYNMKLDIETFGCLIDGLCKAGKLETAWELFEKLYEEGI-QPDAMAYSSMIHGFCK 494

Query: 328 VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADST 387
            G++ +A N+L+Q M + G SP ++TY+ ++RG +   ++E+  ++ + M+   V  D  
Sbjct: 495 KGQVDKA-NILFQKMEENGCSPDLITYSILMRGFYESNKLEKVVQLLHRMIEKDVWPDDG 553

Query: 388 TYAIVIDGLCESNQLDEAKRFWDDIV 413
            YAIV D +C+    DE  + W D++
Sbjct: 554 IYAIVEDMVCK----DEKYKEWLDLL 575



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 124/505 (24%), Positives = 236/505 (46%), Gaps = 26/505 (5%)

Query: 6   GLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSL 65
           G   V +AH+ FFD+  R    ++ S+  L+ G  +       + ++ +M   G+ P+ L
Sbjct: 73  GSISVTQAHQ-FFDLMMR----SIFSFNRLLAGLAKIEHYSQVFSLYKQMHLAGLWPDLL 127

Query: 66  TYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFR 125
           T ++L+  +     +      M  +  R         +   F  L+  LC E  + E  +
Sbjct: 128 TLNILINCLCNVNRINEGLAAMAGIMRR-----GYIPDVVTFTTLIKGLCVEHRIIEATK 182

Query: 126 IAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASR---------VVYVMRKRGLTPSLVS 176
           +   M +          G +I  LC  G  + A +           YV   R   P+++S
Sbjct: 183 LFMRMQKLGCTPNVVTYGTLIKGLCALGNINIALKWHQEMLNDTSPYVFNCR---PNVIS 239

Query: 177 YNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFML 236
           Y+ I+ GLCK G    A  L  E +  G  P+  T+ VL++ LC E  + KA+K+L+ M+
Sbjct: 240 YSIIIDGLCKVGNWEEAICLFNEMVDQGVQPNVVTFSVLIDMLCKEGQVIKAKKLLEMMI 299

Query: 237 SKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIE 296
               V         ++  CL+ +      + V M     +PDVI+ N +ING+CK  ++E
Sbjct: 300 QIGIVPNLFTYTSLIKGFCLVGDLNSAKELFVSMPSKGYEPDVISYNMLINGYCKTLKVE 359

Query: 297 EALKVLNDMV-AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN 355
           EA+K+ N+M+  G +  PD  T   ++  L   G++ +A  L ++V+        +    
Sbjct: 360 EAMKLFNEMLHVGMW--PDVKTSGVLLKALFLAGKVDDAKEL-FRVIKPYAMPKDLCICC 416

Query: 356 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP 415
             L GL +   + EA ++FN +    +  D  T+  +IDGLC++ +L+ A   ++ +   
Sbjct: 417 IFLDGLCKNGYIFEAMKLFNELESYNMKLDIETFGCLIDGLCKAGKLETAWELFEKLYEE 476

Query: 416 SNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREA 475
               D   Y++MI G C+ G++ +A     ++ ++G +P+++ Y++++ G  + +   + 
Sbjct: 477 GIQPDAMAYSSMIHGFCKKGQVDKANILFQKMEENGCSPDLITYSILMRGFYESNKLEKV 536

Query: 476 YQILREMRKNGLNPDAVTWRILDKL 500
            Q+L  M +  + PD   + I++ +
Sbjct: 537 VQLLHRMIEKDVWPDDGIYAIVEDM 561



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 79/344 (22%), Positives = 156/344 (45%), Gaps = 41/344 (11%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC +    EA  LF +M  +G  PNVV+++ LI   C+ G++  A K+ + M   G+
Sbjct: 244 IDGLCKVGNWEEAICLFNEMVDQGVQPNVVTFSVLIDMLCKEGQVIKAKKLLEMMIQIGI 303

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +PN  TY+ L++G     D+  A  L   +  +  E + +S N      L++  C+   V
Sbjct: 304 VPNLFTYTSLIKGFCLVGDLNSAKELFVSMPSKGYEPDVISYN-----MLINGYCKTLKV 358

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E  ++  +M       +    G ++ +L  +G+   A  +  V++   +   L      
Sbjct: 359 EEAMKLFNEMLHVGMWPDVKTSGVLLKALFLAGKVDDAKELFRVIKPYAMPKDLCICCIF 418

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GLCK+G    A +L  E   +       T+  L++GLC    LE A ++ +       
Sbjct: 419 LDGLCKNGYIFEAMKLFNELESYNMKLDIETFGCLIDGLCKAGKLETAWELFE------- 471

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                   +Y   +                     QPD +  +++I+GFCK G++++A  
Sbjct: 472 -------KLYEEGI---------------------QPDAMAYSSMIHGFCKKGQVDKA-N 502

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ 344
           +L   +    C+PD +T++ ++ G     ++++ + LL++++ +
Sbjct: 503 ILFQKMEENGCSPDLITYSILMRGFYESNKLEKVVQLLHRMIEK 546



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 69/117 (58%), Gaps = 5/117 (4%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   ++  A +LF  +   G  P+ ++Y+++IHG+C+ G++D A  +F +M   G 
Sbjct: 454 IDGLCKAGKLETAWELFEKLYEEGIQPDAMAYSSMIHGFCKKGQVDKANILFQKMEENGC 513

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCRE 117
            P+ +TYS+L+RG   +  +E+   L+ ++ E+     D+  ++  +A + D +C++
Sbjct: 514 SPDLITYSILMRGFYESNKLEKVVQLLHRMIEK-----DVWPDDGIYAIVEDMVCKD 565


>gi|125555457|gb|EAZ01063.1| hypothetical protein OsI_23091 [Oryza sativa Indica Group]
          Length = 552

 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 126/454 (27%), Positives = 218/454 (48%), Gaps = 45/454 (9%)

Query: 62  PNSLTYSVLVRGV---LRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREG 118
           P  L++++L++ V   L  RD  R   +  ++   +    DL+ +   ++ +V +L   G
Sbjct: 74  PTLLSFNLLLKCVCSSLVPRDPRRYLDVALRILHEIIPGWDLAPDKFTYSTVVSALADAG 133

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
            V++   +  +M     V  E A   ++ ++ R+G   GA+++   M+ +G  P+  +YN
Sbjct: 134 RVDDAVALVHEMVADGVVAAE-AFNPVLRAMLRAGDVKGAAKLFEFMQLKGCVPTAATYN 192

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
            +VHGL   G    A  ++    + G +P   TY  +V+GL     ++ A KV + M   
Sbjct: 193 VLVHGLLVCGRAGAAMGVMRRMEREGVVPGVMTYGAVVDGLVRCGRVKDAWKVAEEM--- 249

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
              +R  +                  N  V+             +TVI GFCK G I+ A
Sbjct: 250 ---ERNGLAR----------------NEFVY-------------STVITGFCKSGEIDCA 277

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
           LKV   MVA     P+ V ++ +I GL N G++ EA  LL++ M     +P I+TY +++
Sbjct: 278 LKVWEAMVASPV-RPNVVLYSAMIGGLANFGKMTEA-ELLFREMIDSKCAPNIITYGSMI 335

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
           +G F++     A  V+  M+G G + ++ +Y+I+I+GLC   +L +A   W  ++     
Sbjct: 336 QGYFKIGDTSRALSVWEEMIGAGCMPNAVSYSILINGLCNVGRLKDAMMVWKHMLDRGCA 395

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG-VTPNIVCYNVVIDGACKLSMKREAYQ 477
            D   Y +MIKGLC SG +   +   Y+++ SG   P+++ YNV++DG         A  
Sbjct: 396 PDTIAYTSMIKGLCVSGMVDGGLRLFYDMLASGHADPDVISYNVLLDGLLLAKDLPRAMD 455

Query: 478 ILREMRKNGLNPDAVTWRILDKLHG---NRGNDF 508
           +L  M   G +PD VT  I  +  G    +G +F
Sbjct: 456 LLNRMLDQGCDPDTVTCNIFLREFGAGERKGREF 489



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 117/434 (26%), Positives = 196/434 (45%), Gaps = 26/434 (5%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +  L    RV +A  L  +M + G V    ++  ++    R G++  A K+F+ M+  G 
Sbjct: 126 VSALADAGRVDDAVALVHEMVADGVV-AAEAFNPVLRAMLRAGDVKGAAKLFEFMQLKGC 184

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P + TY+VLV G+L      RA   M  +  R  E E +      +  +VD L R G V
Sbjct: 185 VPTAATYNVLVHGLLVC---GRAGAAMGVM--RRMEREGVVPGVMTYGAVVDGLVRCGRV 239

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            + +++AE+M +      EF    +I   C+SG    A +V   M    + P++V Y+++
Sbjct: 240 KDAWKVAEEMERNGLARNEFVYSTVITGFCKSGEIDCALKVWEAMVASPVRPNVVLYSAM 299

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GL   G    A  L  E I     P+  TY  +++G     D  +A  V + M+    
Sbjct: 300 IGGLANFGKMTEAELLFREMIDSKCAPNIITYGSMIQGYFKIGDTSRALSVWEEMIGAGC 359

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           +      +I +  LC +    + + V   ML   C PD I   ++I G C  G ++  L+
Sbjct: 360 MPNAVSYSILINGLCNVGRLKDAMMVWKHMLDRGCAPDTIAYTSMIKGLCVSGMVDGGLR 419

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR- 359
           +  DM+A     PD +++  ++ GLL    +  A++LL +++ Q G  P  VT N  LR 
Sbjct: 420 LFYDMLASGHADPDVISYNVLLDGLLLAKDLPRAMDLLNRMLDQ-GCDPDTVTCNIFLRE 478

Query: 360 -------------GL-FRL---RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQL 402
                        GL  RL   RR   A EV   ML   +V ++  + +V+  +C   ++
Sbjct: 479 FGAGERKGREFLEGLVVRLCDRRRNMAAGEVLMVMLAKYIVPEAPIWEMVVRDVCRRKRV 538

Query: 403 DEA-KRFWDDIVWP 415
                + WD+I  P
Sbjct: 539 WRVIDKCWDEIWGP 552


>gi|449487636|ref|XP_004157725.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g19290-like [Cucumis
           sativus]
          Length = 885

 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 126/482 (26%), Positives = 224/482 (46%), Gaps = 50/482 (10%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M   G  P++ ++ T+I  +C+ G +++A K FDE+   G+  N++ Y++++ G ++ RD
Sbjct: 318 MIENGCKPSIATFCTIIDAFCKEGNVELARKYFDEIEDMGLSQNTIVYNIMISGYVKARD 377

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
           + +AN+L    +E M+ + D+  +   F  LV    R G   +  R+  D+     +++ 
Sbjct: 378 ISQANLL----FEEMRTK-DIVPDGITFNTLVAGHYRYGKEEDGNRLLRDLSVSGLLHDS 432

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
             C   +  LC +GR   A +++  + ++G+ PS+V++NSI+      G   RA+     
Sbjct: 433 SLCDVTVAGLCWAGRYDEAMKLLENLLEKGIPPSVVAFNSIIAAYGNAGLEERAFYAYGI 492

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK----KDVDRTRICNIYLRALC 255
            ++FG  PS  T   L+  L  +  L++A   L  M+ K     ++  T + + Y R + 
Sbjct: 493 MVKFGLTPSSSTCSSLLISLVRKGSLDEAWIALYDMIDKGFPVTNMAFTVLLDGYFR-IG 551

Query: 256 LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA 315
            +     L N    M      PD +     ING C  G + +A  V +DM+   F  P+ 
Sbjct: 552 AVNMAESLWNE---MKGRGVFPDAVAFAAFINGLCISGLMTDAYDVFSDMLRKGF-VPNN 607

Query: 316 VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN 375
             + ++I G   VG++ EAL L+ + M +RG  P I T N ++ GL +  R++ A E F 
Sbjct: 608 FVYNSLIGGFCKVGKLNEALKLVRE-MNKRGLLPDIFTVNMIICGLCKQGRMKLAIETFM 666

Query: 376 CMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG 435
            M  +G+  D  TY  +IDG                                    C++ 
Sbjct: 667 DMCRMGLSPDIVTYNTLIDGY-----------------------------------CKAF 691

Query: 436 KIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWR 495
            +  A   + ++ DSG  P++  YN+ I G C +     A  IL E+   G+ P+ VT+ 
Sbjct: 692 DVGGADDLMMKMSDSGWEPDLTTYNIRIHGYCTVRKINRAVMILEELISVGIVPNTVTYN 751

Query: 496 IL 497
            +
Sbjct: 752 TM 753



 Score =  167 bits (424), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 122/502 (24%), Positives = 228/502 (45%), Gaps = 48/502 (9%)

Query: 34  TLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWER 93
           TL+  + ++     A ++  +MR  GV PN    S+L R ++R  D          +W+ 
Sbjct: 192 TLMQAFVKSEMHFEALEILSKMREVGVTPNPSAISILFRLLIRAGDCG-------AVWKL 244

Query: 94  MKE--EEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCR 151
             +   +    NN  F  L+   CR+G+      +   M + +   + ++   +I++ C 
Sbjct: 245 FGDVVRKGPCPNNFTFNLLILEFCRKGWTRIGEALLHVMGKFRCEPDVYSYNIVINANCL 304

Query: 152 SGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHT 211
            G++  A  ++ +M + G  PS+ ++ +I+   CK G    A +  +E    G   +   
Sbjct: 305 KGQSSYALHLLNLMIENGCKPSIATFCTIIDAFCKEGNVELARKYFDEIEDMGLSQNTIV 364

Query: 212 YKVLVEGLCGESDLEKARKVLQFMLSK--------------------KDVDRTRI----- 246
           Y +++ G     D+ +A  + + M +K                    K+ D  R+     
Sbjct: 365 YNIMISGYVKARDISQANLLFEEMRTKDIVPDGITFNTLVAGHYRYGKEEDGNRLLRDLS 424

Query: 247 ----------CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIE 296
                     C++ +  LC      E + +L  +L+    P V+  N++I  +   G  E
Sbjct: 425 VSGLLHDSSLCDVTVAGLCWAGRYDEAMKLLENLLEKGIPPSVVAFNSIIAAYGNAGLEE 484

Query: 297 EALKVLNDMVAGKF-CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN 355
            A      MV  KF   P + T ++++  L+  G + EA   LY  M  +G+    + + 
Sbjct: 485 RAFYAYGIMV--KFGLTPSSSTCSSLLISLVRKGSLDEAWIALYD-MIDKGFPVTNMAFT 541

Query: 356 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP 415
            +L G FR+  V  A+ ++N M G GV  D+  +A  I+GLC S  + +A   + D++  
Sbjct: 542 VLLDGYFRIGAVNMAESLWNEMKGRGVFPDAVAFAAFINGLCISGLMTDAYDVFSDMLRK 601

Query: 416 SNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREA 475
             + +N+VY ++I G C+ GK++EA+  + E+   G+ P+I   N++I G CK    + A
Sbjct: 602 GFVPNNFVYNSLIGGFCKVGKLNEALKLVREMNKRGLLPDIFTVNMIICGLCKQGRMKLA 661

Query: 476 YQILREMRKNGLNPDAVTWRIL 497
            +   +M + GL+PD VT+  L
Sbjct: 662 IETFMDMCRMGLSPDIVTYNTL 683



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 135/504 (26%), Positives = 224/504 (44%), Gaps = 57/504 (11%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C    V  A K F +++  G   N + Y  +I GY +  ++  A  +F+EMR   +
Sbjct: 334 IDAFCKEGNVELARKYFDEIEDMGLSQNTIVYNIMISGYVKARDISQANLLFEEMRTKDI 393

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P+ +T++ LV G  R    E  N L+           DLSV+                 
Sbjct: 394 VPDGITFNTLVAGHYRYGKEEDGNRLL----------RDLSVSGL--------------- 428

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                          +++   C   +  LC +GR   A +++  + ++G+ PS+V++NSI
Sbjct: 429 ---------------LHDSSLCDVTVAGLCWAGRYDEAMKLLENLLEKGIPPSVVAFNSI 473

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK-- 238
           +      G   RA+      ++FG  PS  T   L+  L  +  L++A   L  M+ K  
Sbjct: 474 IAAYGNAGLEERAFYAYGIMVKFGLTPSSSTCSSLLISLVRKGSLDEAWIALYDMIDKGF 533

Query: 239 --KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIE 296
              ++  T + + Y R +  +     L N    M      PD +     ING C  G + 
Sbjct: 534 PVTNMAFTVLLDGYFR-IGAVNMAESLWNE---MKGRGVFPDAVAFAAFINGLCISGLMT 589

Query: 297 EALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
           +A  V +DM+   F  P+   + ++I G   VG++ EAL L+ + M +RG  P I T N 
Sbjct: 590 DAYDVFSDMLRKGF-VPNNFVYNSLIGGFCKVGKLNEALKLVRE-MNKRGLLPDIFTVNM 647

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQL---DEAKRFWDDIV 413
           ++ GL +  R++ A E F  M  +G+  D  TY  +IDG C++  +   D+      D  
Sbjct: 648 IICGLCKQGRMKLAIETFMDMCRMGLSPDIVTYNTLIDGYCKAFDVGGADDLMMKMSDSG 707

Query: 414 WPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKR 473
           W  ++     Y   I G C   KI+ AV  L EL+  G+ PN V YN +I+  C + +  
Sbjct: 708 WEPDLT---TYNIRIHGYCTVRKINRAVMILEELISVGIVPNTVTYNTMINAVCNVILD- 763

Query: 474 EAYQILREMRKNGLNPDAVTWRIL 497
            A  +  ++ K    P+ VT  +L
Sbjct: 764 HAMILTAKLLKMAFVPNTVTVNVL 787



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 149/300 (49%), Gaps = 11/300 (3%)

Query: 4   LCGLSRVG---EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           L  L R G   EA    +DM  +G     +++T L+ GY R G +++A  +++EM+  GV
Sbjct: 509 LISLVRKGSLDEAWIALYDMIDKGFPVTNMAFTVLLDGYFRIGAVNMAESLWNEMKGRGV 568

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+++ ++  + G+  +  +  A    + ++  M  +     NN  + +L+   C+ G +
Sbjct: 569 FPDAVAFAAFINGLCISGLMTDA----YDVFSDMLRK-GFVPNNFVYNSLIGGFCKVGKL 623

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           NE  ++  +M +   + + F    +I  LC+ GR   A      M + GL+P +V+YN++
Sbjct: 624 NEALKLVREMNKRGLLPDIFTVNMIICGLCKQGRMKLAIETFMDMCRMGLSPDIVTYNTL 683

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G CK      A  L+ +    G+ P   TY + + G C    + +A  +L+ ++S   
Sbjct: 684 IDGYCKAFDVGGADDLMMKMSDSGWEPDLTTYNIRIHGYCTVRKINRAVMILEELISVGI 743

Query: 241 VDRTRICNIYLRALC-LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
           V  T   N  + A+C +I +   +L     +L+    P+ +T+N +++ FCK G  E+A+
Sbjct: 744 VPNTVTYNTMINAVCNVILDHAMILTAK--LLKMAFVPNTVTVNVLLSQFCKQGMPEKAI 801



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 110/232 (47%), Gaps = 8/232 (3%)

Query: 277 PDVITLNTVINGFCKMG--RIEEALKVLNDMVAGKF-CAPDAVTFTTIIFGLLNVGRIQE 333
           P+  T N +I  FC+ G  RI EAL      V GKF C PD  ++  +I      G+   
Sbjct: 255 PNNFTFNLLILEFCRKGWTRIGEALL----HVMGKFRCEPDVYSYNIVINANCLKGQSSY 310

Query: 334 ALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVI 393
           AL+LL  +M + G  P I T+  ++    +   VE A++ F+ +  +G+  ++  Y I+I
Sbjct: 311 ALHLL-NLMIENGCKPSIATFCTIIDAFCKEGNVELARKYFDEIEDMGLSQNTIVYNIMI 369

Query: 394 DGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVT 453
            G  ++  + +A   ++++     + D   +  ++ G  R GK  +    L +L  SG+ 
Sbjct: 370 SGYVKARDISQANLLFEEMRTKDIVPDGITFNTLVAGHYRYGKEEDGNRLLRDLSVSGLL 429

Query: 454 PNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
            +    +V + G C      EA ++L  + + G+ P  V +  +   +GN G
Sbjct: 430 HDSSLCDVTVAGLCWAGRYDEAMKLLENLLEKGIPPSVVAFNSIIAAYGNAG 481



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 60/251 (23%), Positives = 105/251 (41%), Gaps = 6/251 (2%)

Query: 260 PTELLNVLVFMLQTQ--CQPDVITLNTVINGFCKMGRIEEALKVLNDM-VAGKFCAPDAV 316
           P    N+  FM +     + D   L+T++  F K     EAL++L+ M   G    P A+
Sbjct: 166 PGRSKNLAAFMWEGHRVYESDFSVLDTLMQAFVKSEMHFEALEILSKMREVGVTPNPSAI 225

Query: 317 TFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNC 376
           +   I+F LL       A+  L+  + ++G  P   T+N ++    R       + + + 
Sbjct: 226 S---ILFRLLIRAGDCGAVWKLFGDVVRKGPCPNNFTFNLLILEFCRKGWTRIGEALLHV 282

Query: 377 MLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGK 436
           M       D  +Y IVI+  C   Q   A    + ++          +  +I   C+ G 
Sbjct: 283 MGKFRCEPDVYSYNIVINANCLKGQSSYALHLLNLMIENGCKPSIATFCTIIDAFCKEGN 342

Query: 437 IHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRI 496
           +  A  +  E+ D G++ N + YN++I G  K     +A  +  EMR   + PD +T+  
Sbjct: 343 VELARKYFDEIEDMGLSQNTIVYNIMISGYVKARDISQANLLFEEMRTKDIVPDGITFNT 402

Query: 497 LDKLHGNRGND 507
           L   H   G +
Sbjct: 403 LVAGHYRYGKE 413


>gi|326533642|dbj|BAK05352.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 860

 Score =  172 bits (435), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 135/533 (25%), Positives = 229/533 (42%), Gaps = 75/533 (14%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    + +A  +   M + G  P+ V+Y+ +IHGY   G +  A K+F EM+  G+
Sbjct: 307 IDALCKARAMDKAELVLRQMTTDGAQPDTVTYSCMIHGYATLGRLKEAAKMFREMKKRGL 366

Query: 61  LPNSLTYSVLVRGVLR-TRDVERANVL------------------------------MFK 89
           +PN +T +  +  + +  R  E A                                 M  
Sbjct: 367 IPNIVTCNSFLASLCKHGRSKEAAEFFDSMTAKGHKPDIFSYCTLLHGYASEGCFADMIG 426

Query: 90  LWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSL 149
           L+  MK    ++ N   F  L+ +  + G V++   I  +M Q     +      +I + 
Sbjct: 427 LFNSMK-SNGIAANCHVFTILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISTF 485

Query: 150 CRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL-PS 208
            R GR   A      M  RG+ P+   Y+SI+ G C HGG ++A +L+ E I  G   P 
Sbjct: 486 SRMGRLTDAMEKFNQMVARGIQPNTAVYSSIIQGFCMHGGLVKAKELVSEMINKGIPRPD 545

Query: 209 EHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLV 268
              +  ++  LC +  +  A  +        D+                           
Sbjct: 546 IVFFSSVINSLCKDGRVMDAHDIFDL---ATDIGE------------------------- 577

Query: 269 FMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM-VAGKFCAPDAVTFTTIIFGLLN 327
                  +P VIT N++I+G+C +G++++A K+L+ M V G    PD VT+ T++ G   
Sbjct: 578 -------RPGVITFNSLIDGYCLVGKMDKAFKILDAMEVVG--VEPDIVTYNTLLDGYFK 628

Query: 328 VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADST 387
            GRI + L  L++ M ++G  P  VTY  +L GLFR  R   A++ F+ M+  G     +
Sbjct: 629 NGRINDGLT-LFREMQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESGTTVTVS 687

Query: 388 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYEL 447
            Y I++ GLC +N  DEA   +  +   +      +   MI  + +  +  EA      +
Sbjct: 688 IYGIILGGLCRNNCADEAIILFQKLGTMNVKFSITILNTMINAMYKVQRKEEAKELFATI 747

Query: 448 VDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKL 500
             SG+ PN   Y V+I    K     +A  +   M K+G+ P +   R+L+++
Sbjct: 748 SASGLLPNESTYGVMIINLLKDGGVEDANNMFSSMEKSGIVPGS---RLLNRI 797



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 118/477 (24%), Positives = 222/477 (46%), Gaps = 13/477 (2%)

Query: 26  VPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERA-N 84
           VP   +Y  L+   CR    D+   +F  +   G+  + +T + L++ +      E A N
Sbjct: 154 VPTFCTYNILMDCCCRARRPDLGLALFGCILRTGLKMDQITANTLLKCLCYANRTEEAVN 213

Query: 85  VLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQ--GKSVNEEFAC 142
           VL+ ++      E     N  +++ ++ +LC          + + M +  G    +  A 
Sbjct: 214 VLLHRM-----SELGCVPNAVSYSIVLKALCDNSMSQRALDLLQMMAKQGGACSPDVVAY 268

Query: 143 GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQ 202
             +I      G    A  + + M ++G+ P +V+YN I+  LCK     +A  +L +   
Sbjct: 269 STVIHGFFNEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTT 328

Query: 203 FGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTE 262
            G  P   TY  ++ G      L++A K+ + M  +  +     CN +L +LC      E
Sbjct: 329 DGAQPDTVTYSCMIHGYATLGRLKEAAKMFREMKKRGLIPNIVTCNSFLASLCKHGRSKE 388

Query: 263 LLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTII 322
                  M     +PD+ +  T+++G+   G   + + + N M +    A +   FT +I
Sbjct: 389 AAEFFDSMTAKGHKPDIFSYCTLLHGYASEGCFADMIGLFNSMKSNGI-AANCHVFTILI 447

Query: 323 FGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGV 382
                 G + +A+ L++  M Q+G SP +VTY+ V+    R+ R+ +A E FN M+  G+
Sbjct: 448 HAYAKRGMVDDAM-LIFTEMQQQGVSPDVVTYSTVISTFSRMGRLTDAMEKFNQMVARGI 506

Query: 383 VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV-YAAMIKGLCRSGKIHEAV 441
             ++  Y+ +I G C    L +AK    +++       + V ++++I  LC+ G++ +A 
Sbjct: 507 QPNTAVYSSIIQGFCMHGGLVKAKELVSEMINKGIPRPDIVFFSSVINSLCKDGRVMDA- 565

Query: 442 HFLYEL-VDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           H +++L  D G  P ++ +N +IDG C +    +A++IL  M   G+ PD VT+  L
Sbjct: 566 HDIFDLATDIGERPGVITFNSLIDGYCLVGKMDKAFKILDAMEVVGVEPDIVTYNTL 622



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 124/497 (24%), Positives = 221/497 (44%), Gaps = 9/497 (1%)

Query: 4   LCGLSRVGEA-HKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCG--V 60
           LC  +R  EA + L   M   G VPN VSY+ ++   C       A  +   M   G   
Sbjct: 202 LCYANRTEEAVNVLLHRMSELGCVPNAVSYSIVLKALCDNSMSQRALDLLQMMAKQGGAC 261

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ + YS ++ G     +  +A  L F    R   + D+   N     ++D+LC+   +
Sbjct: 262 SPDVVAYSTVIHGFFNEGETGKACSL-FHEMTRQGVKPDVVTYNL----IIDALCKARAM 316

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           ++   +   M    +  +      MI      GR   A+++   M+KRGL P++V+ NS 
Sbjct: 317 DKAELVLRQMTTDGAQPDTVTYSCMIHGYATLGRLKEAAKMFREMKKRGLIPNIVTCNSF 376

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +  LCKHG    A +  +     G+ P   +Y  L+ G   E        +   M S   
Sbjct: 377 LASLCKHGRSKEAAEFFDSMTAKGHKPDIFSYCTLLHGYASEGCFADMIGLFNSMKSNGI 436

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                +  I + A        + + +   M Q    PDV+T +TVI+ F +MGR+ +A++
Sbjct: 437 AANCHVFTILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISTFSRMGRLTDAME 496

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
             N MVA +   P+   +++II G    G + +A  L+ +++ +    P IV +++V+  
Sbjct: 497 KFNQMVA-RGIQPNTAVYSSIIQGFCMHGGLVKAKELVSEMINKGIPRPDIVFFSSVINS 555

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L +  RV +A ++F+    IG      T+  +IDG C   ++D+A +  D +       D
Sbjct: 556 LCKDGRVMDAHDIFDLATDIGERPGVITFNSLIDGYCLVGKMDKAFKILDAMEVVGVEPD 615

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              Y  ++ G  ++G+I++ +    E+   GV PN V Y +++ G  +      A +   
Sbjct: 616 IVTYNTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFH 675

Query: 481 EMRKNGLNPDAVTWRIL 497
           EM ++G       + I+
Sbjct: 676 EMIESGTTVTVSIYGII 692



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 124/535 (23%), Positives = 235/535 (43%), Gaps = 45/535 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHV--PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHC 58
           +  LC  S    A  L   M  +G    P+VV+Y+T+IHG+   GE   A  +F EM   
Sbjct: 235 LKALCDNSMSQRALDLLQMMAKQGGACSPDVVAYSTVIHGFFNEGETGKACSLFHEMTRQ 294

Query: 59  GVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREG 118
           GV P+ +TY++++  + + R +++A +++     R    +    +   ++ ++      G
Sbjct: 295 GVKPDVVTYNLIIDALCKARAMDKAELVL-----RQMTTDGAQPDTVTYSCMIHGYATLG 349

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
            + E  ++  +M +   +     C   + SLC+ GR+  A+     M  +G  P + SY 
Sbjct: 350 RLKEAAKMFREMKKRGLIPNIVTCNSFLASLCKHGRSKEAAEFFDSMTAKGHKPDIFSYC 409

Query: 179 SIVHGLCKHG-------------------GC------MRAYQ----------LLEEGIQF 203
           +++HG    G                    C      + AY           +  E  Q 
Sbjct: 410 TLLHGYASEGCFADMIGLFNSMKSNGIAANCHVFTILIHAYAKRGMVDDAMLIFTEMQQQ 469

Query: 204 GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTEL 263
           G  P   TY  ++        L  A +    M+++     T + +  ++  C+     + 
Sbjct: 470 GVSPDVVTYSTVISTFSRMGRLTDAMEKFNQMVARGIQPNTAVYSSIIQGFCMHGGLVKA 529

Query: 264 LNVLVFMLQTQC-QPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTII 322
             ++  M+     +PD++  ++VIN  CK GR+ +A  +  D+       P  +TF ++I
Sbjct: 530 KELVSEMINKGIPRPDIVFFSSVINSLCKDGRVMDAHDIF-DLATDIGERPGVITFNSLI 588

Query: 323 FGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGV 382
            G   VG++ +A  +L   M   G  P IVTYN +L G F+  R+ +   +F  M   GV
Sbjct: 589 DGYCLVGKMDKAFKIL-DAMEVVGVEPDIVTYNTLLDGYFKNGRINDGLTLFREMQRKGV 647

Query: 383 VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVH 442
             ++ TY I++ GL  + +   A++ + +++         +Y  ++ GLCR+    EA+ 
Sbjct: 648 KPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESGTTVTVSIYGIILGGLCRNNCADEAII 707

Query: 443 FLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
              +L    V  +I   N +I+   K+  K EA ++   +  +GL P+  T+ ++
Sbjct: 708 LFQKLGTMNVKFSITILNTMINAMYKVQRKEEAKELFATISASGLLPNESTYGVM 762



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 117/458 (25%), Positives = 201/458 (43%), Gaps = 8/458 (1%)

Query: 7   LSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLT 66
           L R+ EA K+F +MK RG +PN+V+  + +   C+ G    A + FD M   G  P+  +
Sbjct: 348 LGRLKEAAKMFREMKKRGLIPNIVTCNSFLASLCKHGRSKEAAEFFDSMTAKGHKPDIFS 407

Query: 67  YSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRI 126
           Y  L+ G       E     M  L+  MK    ++ N   F  L+ +  + G V++   I
Sbjct: 408 YCTLLHGYAS----EGCFADMIGLFNSMKSN-GIAANCHVFTILIHAYAKRGMVDDAMLI 462

Query: 127 AEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK 186
             +M Q     +      +I +  R GR   A      M  RG+ P+   Y+SI+ G C 
Sbjct: 463 FTEMQQQGVSPDVVTYSTVISTFSRMGRLTDAMEKFNQMVARGIQPNTAVYSSIIQGFCM 522

Query: 187 HGGCMRAYQLLEEGIQFGYL-PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTR 245
           HGG ++A +L+ E I  G   P    +  ++  LC +  +  A  +        +     
Sbjct: 523 HGGLVKAKELVSEMINKGIPRPDIVFFSSVINSLCKDGRVMDAHDIFDLATDIGERPGVI 582

Query: 246 ICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM 305
             N  +   CL+    +   +L  M     +PD++T NT+++G+ K GRI + L +  +M
Sbjct: 583 TFNSLIDGYCLVGKMDKAFKILDAMEVVGVEPDIVTYNTLLDGYFKNGRINDGLTLFREM 642

Query: 306 VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLR 365
              K   P+ VT+  ++ GL   GR   A    ++ M + G +  +  Y  +L GL R  
Sbjct: 643 -QRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHE-MIESGTTVTVSIYGIILGGLCRNN 700

Query: 366 RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYA 425
             +EA  +F  +  + V    T    +I+ + +  + +EAK  +  I     + +   Y 
Sbjct: 701 CADEAIILFQKLGTMNVKFSITILNTMINAMYKVQRKEEAKELFATISASGLLPNESTYG 760

Query: 426 AMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463
            MI  L + G + +A +    +  SG+ P     N +I
Sbjct: 761 VMIINLLKDGGVEDANNMFSSMEKSGIVPGSRLLNRII 798



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 139/310 (44%), Gaps = 4/310 (1%)

Query: 198 EEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLI 257
           E G Q   +P+  TY +L++  C     +    +   +L           N  L+ LC  
Sbjct: 147 EAGTQVA-VPTFCTYNILMDCCCRARRPDLGLALFGCILRTGLKMDQITANTLLKCLCYA 205

Query: 258 KNPTELLNVLVF-MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA-GKFCAPDA 315
               E +NVL+  M +  C P+ ++ + V+   C     + AL +L  M   G  C+PD 
Sbjct: 206 NRTEEAVNVLLHRMSELGCVPNAVSYSIVLKALCDNSMSQRALDLLQMMAKQGGACSPDV 265

Query: 316 VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN 375
           V ++T+I G  N G   +A +L ++ M ++G  P +VTYN ++  L + R +++A+ V  
Sbjct: 266 VAYSTVIHGFFNEGETGKACSLFHE-MTRQGVKPDVVTYNLIIDALCKARAMDKAELVLR 324

Query: 376 CMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG 435
            M   G   D+ TY+ +I G     +L EA + + ++     I +     + +  LC+ G
Sbjct: 325 QMTTDGAQPDTVTYSCMIHGYATLGRLKEAAKMFREMKKRGLIPNIVTCNSFLASLCKHG 384

Query: 436 KIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWR 495
           +  EA  F   +   G  P+I  Y  ++ G        +   +   M+ NG+  +   + 
Sbjct: 385 RSKEAAEFFDSMTAKGHKPDIFSYCTLLHGYASEGCFADMIGLFNSMKSNGIAANCHVFT 444

Query: 496 ILDKLHGNRG 505
           IL   +  RG
Sbjct: 445 ILIHAYAKRG 454



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/305 (23%), Positives = 139/305 (45%), Gaps = 11/305 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   RV +AH +F      G  P V+++ +LI GYC  G+MD A+K+ D M   GV
Sbjct: 553 INSLCKDGRVMDAHDIFDLATDIGERPGVITFNSLIDGYCLVGKMDKAFKILDAMEVVGV 612

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TY+ L+ G  +   +    + +F+  +R    + +  N   +  ++  L R G  
Sbjct: 613 EPDIVTYNTLLDGYFKNGRINDG-LTLFREMQR----KGVKPNTVTYGIMLAGLFRAGRT 667

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRG---LTPSLVSY 177
               +   +M +  +       G ++  LC   RN+ A   + + +K G   +  S+   
Sbjct: 668 VAARKKFHEMIESGTTVTVSIYGIILGGLC---RNNCADEAIILFQKLGTMNVKFSITIL 724

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
           N++++ + K      A +L       G LP+E TY V++  L  +  +E A  +   M  
Sbjct: 725 NTMINAMYKVQRKEEAKELFATISASGLLPNESTYGVMIINLLKDGGVEDANNMFSSMEK 784

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
              V  +R+ N  +R L       +  N L  +   +   +  T + +++ F + G+ +E
Sbjct: 785 SGIVPGSRLLNRIIRMLLEKGEIAKAGNYLSKVDGKRILLEASTTSLMLSLFSRKGKYQE 844

Query: 298 ALKVL 302
            +K+L
Sbjct: 845 DIKLL 849


>gi|357115347|ref|XP_003559450.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
            chloroplastic-like [Brachypodium distachyon]
          Length = 1102

 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 139/568 (24%), Positives = 253/568 (44%), Gaps = 79/568 (13%)

Query: 9    RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
            R+G A ++F ++KS G  P+ ++YT +I    +    D A KVF EM     +P+ L  +
Sbjct: 476  RLGMAKRVFHELKSIGVCPDNITYTMMIKCCSKASNADEAMKVFSEMIETRCVPDVLAVN 535

Query: 69   VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
             L+  + +      A    +K++  +KE  +L   +  +  L+  L REG V EV  + E
Sbjct: 536  SLIDTLYKAGRGNEA----WKIFHELKEM-NLDPTDCTYNTLLAGLGREGKVKEVMHLLE 590

Query: 129  DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
            +M              ++D LC++G  + A  ++Y M  +G  P L SYN+ +HGL K  
Sbjct: 591  EMNSNSYPPNLITYNTVLDCLCKNGEVNYALGMLYNMTMKGCMPDLSSYNTALHGLVKED 650

Query: 189  GCMRAYQLL-----------------------------------EEGIQFGYLPSEHTYK 213
                A+++                                    E  +Q G      ++ 
Sbjct: 651  RLTEAFRIFCQMKKVLAPDYTTLCTILPSFVKNGLMNEALHTLKEYILQPGSKADRSSFH 710

Query: 214  VLVEGLCGESDLEKARKVLQ-FMLSKKDVDRTRICNIYLRALCLIKNPTEL--------- 263
             L+EG+   + +EK+ +  +   LS+  +D   +  + +R LC  K   E          
Sbjct: 711  SLMEGILKRAGMEKSIEFAENIALSRILLDDFFLSPL-IRHLCKSKKALEAHELVKKFES 769

Query: 264  ---------LNVLVF-----------------MLQTQCQPDVITLNTVINGFCKMGRIEE 297
                      N L+                  M +  C PD  T N +++   K  RIE+
Sbjct: 770  LGVSLKTGSYNALICGLVDENLIDVAEGLFSEMKRLGCDPDEFTYNLILDAMGKSMRIED 829

Query: 298  ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
             LKV  +M    +     VT+ TII GL+    + EA++L Y++M + G+SP   TY  +
Sbjct: 830  MLKVQKEMHCKGY-ESTYVTYNTIISGLVKSKMLYEAMDLYYKLMSE-GFSPTPCTYGPL 887

Query: 358  LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 417
            L GL +  ++E+A+++F+ ML  G   +   Y I+++G   +   ++    + ++V    
Sbjct: 888  LDGLLKDGKIEDAEDLFDEMLDYGCKPNRAIYNILLNGYRLAGNTEKVCELFQNMVDQGI 947

Query: 418  IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQ 477
              D   Y  +I  LC +G++++++ +  +L + G+ P+++ YN++I G  +     EA  
Sbjct: 948  NPDIKSYTVLIGALCTAGRLNDSLSYFRQLTELGLEPDLITYNLLIHGLGRSGRLEEAVS 1007

Query: 478  ILREMRKNGLNPDAVTWRILDKLHGNRG 505
            +  +M K+G+ P+  T+  L    G  G
Sbjct: 1008 LFNDMEKSGIAPNLYTYNSLILYLGKEG 1035



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 128/568 (22%), Positives = 241/568 (42%), Gaps = 67/568 (11%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC + RV EA  +F  MK +G  P   SY +LI G+ +   ++ A ++F+ M   G 
Sbjct: 363 VDALCQVGRVDEASDVFDQMKQKGIEPQQYSYNSLISGFLKADRLNHALELFNHMNIHGP 422

Query: 61  LPNSLTYSVLV----------RGVLR---------TRDVERANVLMFKLWER-------- 93
            PN  TY + +          + + R           DV   N +++ L +         
Sbjct: 423 TPNGYTYVLFINYYGKSGESLKAIKRYELMKSKGIVPDVVAGNAVLYSLAKSGRLGMAKR 482

Query: 94  -MKEEEDLSV--NNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC 150
              E + + V  +N  +  ++    +    +E  ++  +M + + V +  A   +ID+L 
Sbjct: 483 VFHELKSIGVCPDNITYTMMIKCCSKASNADEAMKVFSEMIETRCVPDVLAVNSLIDTLY 542

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
           ++GR + A ++ + +++  L P+  +YN+++ GL + G       LLEE     Y P+  
Sbjct: 543 KAGRGNEAWKIFHELKEMNLDPTDCTYNTLLAGLGREGKVKEVMHLLEEMNSNSYPPNLI 602

Query: 211 TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM 270
           TY  +++ LC   ++  A  +L  M  K  +      N  L  L      TE   +   M
Sbjct: 603 TYNTVLDCLCKNGEVNYALGMLYNMTMKGCMPDLSSYNTALHGLVKEDRLTEAFRIFCQM 662

Query: 271 LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR 330
            +    PD  TL T++  F K G + EAL  L + +       D  +F +++ G+L    
Sbjct: 663 KKV-LAPDYTTLCTILPSFVKNGLMNEALHTLKEYILQPGSKADRSSFHSLMEGILKRAG 721

Query: 331 IQEALNLLYQVMPQR----------------------------------GYSPGIVTYNA 356
           +++++     +   R                                  G S    +YNA
Sbjct: 722 MEKSIEFAENIALSRILLDDFFLSPLIRHLCKSKKALEAHELVKKFESLGVSLKTGSYNA 781

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416
           ++ GL     ++ A+ +F+ M  +G   D  TY +++D + +S ++++  +   ++    
Sbjct: 782 LICGLVDENLIDVAEGLFSEMKRLGCDPDEFTYNLILDAMGKSMRIEDMLKVQKEMHCKG 841

Query: 417 NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAY 476
                  Y  +I GL +S  ++EA+   Y+L+  G +P    Y  ++DG  K     +A 
Sbjct: 842 YESTYVTYNTIISGLVKSKMLYEAMDLYYKLMSEGFSPTPCTYGPLLDGLLKDGKIEDAE 901

Query: 477 QILREMRKNGLNPDAVTWRILDKLHGNR 504
            +  EM   G  P+   + IL  L+G R
Sbjct: 902 DLFDEMLDYGCKPNRAIYNIL--LNGYR 927



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 128/563 (22%), Positives = 243/563 (43%), Gaps = 78/563 (13%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           R  EA+K+   M+  G  P+VV+ T LI   C  G +  A  VF +M+     P+ +TY 
Sbjct: 266 RFEEAYKILQKMEDEGCKPDVVTNTVLIQILCDAGRVSDAKDVFWKMKASDQKPDRVTYI 325

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
            L+       D       + ++W  MK  +  + N  A+  +VD+LC+ G V+E   + +
Sbjct: 326 TLLDKCGDNGDSRS----VIEIWNAMK-ADGYNDNVVAYTAVVDALCQVGRVDEASDVFD 380

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGR-NH----------------GASRVVYV------- 164
            M Q     ++++   +I    ++ R NH                G + V+++       
Sbjct: 381 QMKQKGIEPQQYSYNSLISGFLKADRLNHALELFNHMNIHGPTPNGYTYVLFINYYGKSG 440

Query: 165 -----------MRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYK 213
                      M+ +G+ P +V+ N++++ L K G    A ++  E    G  P   TY 
Sbjct: 441 ESLKAIKRYELMKSKGIVPDVVAGNAVLYSLAKSGRLGMAKRVFHELKSIGVCPDNITYT 500

Query: 214 VLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQT 273
           ++++     S+ ++A KV   M+  + V      N  +  L       E   +   + + 
Sbjct: 501 MMIKCCSKASNADEAMKVFSEMIETRCVPDVLAVNSLIDTLYKAGRGNEAWKIFHELKEM 560

Query: 274 QCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQE 333
              P   T NT++ G  + G+++E + +L +M +  +  P+ +T+ T++  L   G +  
Sbjct: 561 NLDPTDCTYNTLLAGLGREGKVKEVMHLLEEMNSNSY-PPNLITYNTVLDCLCKNGEVNY 619

Query: 334 ALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCM---------------- 377
           AL +LY  M  +G  P + +YN  L GL +  R+ EA  +F  M                
Sbjct: 620 ALGMLYN-MTMKGCMPDLSSYNTALHGLVKEDRLTEAFRIFCQMKKVLAPDYTTLCTILP 678

Query: 378 -------------------LGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
                              L  G  AD +++  +++G+ +   ++++  F ++I     +
Sbjct: 679 SFVKNGLMNEALHTLKEYILQPGSKADRSSFHSLMEGILKRAGMEKSIEFAENIALSRIL 738

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI 478
            D++  + +I+ LC+S K  EA   + +    GV+     YN +I G    ++   A  +
Sbjct: 739 LDDFFLSPLIRHLCKSKKALEAHELVKKFESLGVSLKTGSYNALICGLVDENLIDVAEGL 798

Query: 479 LREMRKNGLNPDAVTWR-ILDKL 500
             EM++ G +PD  T+  ILD +
Sbjct: 799 FSEMKRLGCDPDEFTYNLILDAM 821



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 114/497 (22%), Positives = 225/497 (45%), Gaps = 13/497 (2%)

Query: 1    MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
            +D LC    V  A  + ++M  +G +P++ SY T +HG  +   +  A+++F +M+   +
Sbjct: 608  LDCLCKNGEVNYALGMLYNMTMKGCMPDLSSYNTALHGLVKEDRLTEAFRIFCQMKKV-L 666

Query: 61   LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKE---EEDLSVNNAAFANLVDSLCRE 117
             P+  T   ++   ++       N LM +    +KE   +     + ++F +L++ + + 
Sbjct: 667  APDYTTLCTILPSFVK-------NGLMNEALHTLKEYILQPGSKADRSSFHSLMEGILKR 719

Query: 118  GYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
              + +    AE++   + + ++F    +I  LC+S +   A  +V      G++    SY
Sbjct: 720  AGMEKSIEFAENIALSRILLDDFFLSPLIRHLCKSKKALEAHELVKKFESLGVSLKTGSY 779

Query: 178  NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
            N+++ GL        A  L  E  + G  P E TY ++++ +     +E   KV + M  
Sbjct: 780  NALICGLVDENLIDVAEGLFSEMKRLGCDPDEFTYNLILDAMGKSMRIEDMLKVQKEMHC 839

Query: 238  KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
            K         N  +  L   K   E +++   ++     P   T   +++G  K G+IE+
Sbjct: 840  KGYESTYVTYNTIISGLVKSKMLYEAMDLYYKLMSEGFSPTPCTYGPLLDGLLKDGKIED 899

Query: 298  ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
            A  + ++M+    C P+   +  ++ G    G  ++   L +Q M  +G +P I +Y  +
Sbjct: 900  AEDLFDEML-DYGCKPNRAIYNILLNGYRLAGNTEKVCEL-FQNMVDQGINPDIKSYTVL 957

Query: 358  LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 417
            +  L    R+ ++   F  +  +G+  D  TY ++I GL  S +L+EA   ++D+     
Sbjct: 958  IGALCTAGRLNDSLSYFRQLTELGLEPDLITYNLLIHGLGRSGRLEEAVSLFNDMEKSGI 1017

Query: 418  IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQ 477
              + Y Y ++I  L + GK  EA     EL+ +G  PN+  YN +I G         A+ 
Sbjct: 1018 APNLYTYNSLILYLGKEGKAAEAGKMYEELLKNGWKPNVFTYNALIGGYSVSGSTDNAFA 1077

Query: 478  ILREMRKNGLNPDAVTW 494
               +M   G  P++ T+
Sbjct: 1078 SYGQMIVGGCPPNSSTY 1094



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 128/494 (25%), Positives = 217/494 (43%), Gaps = 54/494 (10%)

Query: 16  LFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVL 75
           L  +M+  G  PNV SYT  I    + G  + AYK+  +M   G  P+ +T +VL++ + 
Sbjct: 238 LLREMEDHGVKPNVYSYTICIRVLGQAGRFEEAYKILQKMEDEGCKPDVVTNTVLIQILC 297

Query: 76  RTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKS 135
               V  A  + +K+     +  D   +   +  L+D     G    V  I   M     
Sbjct: 298 DAGRVSDAKDVFWKM-----KASDQKPDRVTYITLLDKCGDNGDSRSVIEIWNAMKADGY 352

Query: 136 VNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQ 195
            +   A   ++D+LC+ GR   AS V   M+++G+ P   SYNS++ G  K      A +
Sbjct: 353 NDNVVAYTAVVDALCQVGRVDEASDVFDQMKQKGIEPQQYSYNSLISGFLKADRLNHALE 412

Query: 196 LLEEGIQFGYLPSEHTYKVLVE--GLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRA 253
           L       G  P+ +TY + +   G  GES   KA K  + M SK  V      N  L +
Sbjct: 413 LFNHMNIHGPTPNGYTYVLFINYYGKSGES--LKAIKRYELMKSKGIVPDVVAGNAVLYS 470

Query: 254 LC-----------------------------LIK------NPTELLNVLVFMLQTQCQPD 278
           L                              +IK      N  E + V   M++T+C PD
Sbjct: 471 LAKSGRLGMAKRVFHELKSIGVCPDNITYTMMIKCCSKASNADEAMKVFSEMIETRCVPD 530

Query: 279 VITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLL 338
           V+ +N++I+   K GR  EA K+ +++       P   T+ T++ GL   G+++E ++LL
Sbjct: 531 VLAVNSLIDTLYKAGRGNEAWKIFHELKEMNL-DPTDCTYNTLLAGLGREGKVKEVMHLL 589

Query: 339 YQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE 398
            + M    Y P ++TYN VL  L +   V  A  +   M   G + D ++Y   + GL +
Sbjct: 590 EE-MNSNSYPPNLITYNTVLDCLCKNGEVNYALGMLYNMTMKGCMPDLSSYNTALHGLVK 648

Query: 399 SNQLDEAKRFW---DDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE-LVDSGVTP 454
            ++L EA R +     ++ P    D      ++    ++G ++EA+H L E ++  G   
Sbjct: 649 EDRLTEAFRIFCQMKKVLAP----DYTTLCTILPSFVKNGLMNEALHTLKEYILQPGSKA 704

Query: 455 NIVCYNVVIDGACK 468
           +   ++ +++G  K
Sbjct: 705 DRSSFHSLMEGILK 718



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 120/494 (24%), Positives = 214/494 (43%), Gaps = 48/494 (9%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           MK  G V N  +Y  LI+   ++G    A +V+  M   G++P+  TYSVL+    + RD
Sbjct: 173 MKEAGIVLNSYTYNGLIYFLVKSGYDREAMEVYKVMATDGIVPSVRTYSVLMLAFGK-RD 231

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
           VE    L+     R  E+  +  N  ++   +  L + G   E ++I + M       + 
Sbjct: 232 VETVVWLL-----REMEDHGVKPNVYSYTICIRVLGQAGRFEEAYKILQKMEDEGCKPDV 286

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
                +I  LC +GR   A  V + M+     P  V+Y +++     +G      ++   
Sbjct: 287 VTNTVLIQILCDAGRVSDAKDVFWKMKASDQKPDRVTYITLLDKCGDNGDSRSVIEIWNA 346

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
               GY  +   Y  +V+ LC    +++A  V   M                        
Sbjct: 347 MKADGYNDNVVAYTAVVDALCQVGRVDEASDVFDQMK----------------------- 383

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
                       Q   +P   + N++I+GF K  R+  AL++ N M       P    +T
Sbjct: 384 ------------QKGIEPQQYSYNSLISGFLKADRLNHALELFNHM---NIHGPTPNGYT 428

Query: 320 TIIFGLLNVGRIQEALNLL--YQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCM 377
            ++F +   G+  E+L  +  Y++M  +G  P +V  NAVL  L +  R+  AK VF+ +
Sbjct: 429 YVLF-INYYGKSGESLKAIKRYELMKSKGIVPDVVAGNAVLYSLAKSGRLGMAKRVFHEL 487

Query: 378 LGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKI 437
             IGV  D+ TY ++I    +++  DEA + + +++    + D     ++I  L ++G+ 
Sbjct: 488 KSIGVCPDNITYTMMIKCCSKASNADEAMKVFSEMIETRCVPDVLAVNSLIDTLYKAGRG 547

Query: 438 HEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWR-I 496
           +EA    +EL +  + P    YN ++ G  +    +E   +L EM  N   P+ +T+  +
Sbjct: 548 NEAWKIFHELKEMNLDPTDCTYNTLLAGLGREGKVKEVMHLLEEMNSNSYPPNLITYNTV 607

Query: 497 LDKLHGNRGNDFGL 510
           LD L  N   ++ L
Sbjct: 608 LDCLCKNGEVNYAL 621



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 99/407 (24%), Positives = 181/407 (44%), Gaps = 46/407 (11%)

Query: 132 QGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKR----------------------- 168
           Q + V+   +C +M++ +   GR    ++V  +M+++                       
Sbjct: 105 QPRIVHTTESCNYMLELMRAHGRVRDMAQVFDLMQRQIVKANVGTFLTIFRSLGMEGGLR 164

Query: 169 ------------GLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLV 216
                       G+  +  +YN +++ L K G    A ++ +     G +PS  TY VL+
Sbjct: 165 SAPVALPMMKEAGIVLNSYTYNGLIYFLVKSGYDREAMEVYKVMATDGIVPSVRTYSVLM 224

Query: 217 EGLCGESDLEKARKVLQFMLS---KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQT 273
               G+ D+E    +L+ M     K +V    IC   +R L       E   +L  M   
Sbjct: 225 LAF-GKRDVETVVWLLREMEDHGVKPNVYSYTIC---IRVLGQAGRFEEAYKILQKMEDE 280

Query: 274 QCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQE 333
            C+PDV+T   +I   C  GR+ +A  V   M A     PD VT+ T++    + G  + 
Sbjct: 281 GCKPDVVTNTVLIQILCDAGRVSDAKDVFWKMKASD-QKPDRVTYITLLDKCGDNGDSRS 339

Query: 334 ALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVI 393
            +  ++  M   GY+  +V Y AV+  L ++ RV+EA +VF+ M   G+     +Y  +I
Sbjct: 340 VIE-IWNAMKADGYNDNVVAYTAVVDALCQVGRVDEASDVFDQMKQKGIEPQQYSYNSLI 398

Query: 394 DGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS-GV 452
            G  ++++L+ A   ++ +       + Y Y   I    +SG+  +A+   YEL+ S G+
Sbjct: 399 SGFLKADRLNHALELFNHMNIHGPTPNGYTYVLFINYYGKSGESLKAIK-RYELMKSKGI 457

Query: 453 TPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
            P++V  N V+    K      A ++  E++  G+ PD +T+ ++ K
Sbjct: 458 VPDVVAGNAVLYSLAKSGRLGMAKRVFHELKSIGVCPDNITYTMMIK 504



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 93/215 (43%), Gaps = 5/215 (2%)

Query: 1    MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
            +D L    ++ +A  LF +M   G  PN   Y  L++GY   G  +   ++F  M   G+
Sbjct: 888  LDGLLKDGKIEDAEDLFDEMLDYGCKPNRAIYNILLNGYRLAGNTEKVCELFQNMVDQGI 947

Query: 61   LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             P+  +Y+VL+ G L T      ++  F+    +  E DL   N     L+  L R G +
Sbjct: 948  NPDIKSYTVLI-GALCTAGRLNDSLSYFRQLTELGLEPDLITYNL----LIHGLGRSGRL 1002

Query: 121  NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
             E   +  DM +       +    +I  L + G+   A ++   + K G  P++ +YN++
Sbjct: 1003 EEAVSLFNDMEKSGIAPNLYTYNSLILYLGKEGKAAEAGKMYEELLKNGWKPNVFTYNAL 1062

Query: 181  VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVL 215
            + G    G    A+    + I  G  P+  TY  L
Sbjct: 1063 IGGYSVSGSTDNAFASYGQMIVGGCPPNSSTYMQL 1097



 Score = 46.6 bits (109), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 35/67 (52%)

Query: 9    RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
            +  EA K++ ++   G  PNV +Y  LI GY  +G  D A+  + +M   G  PNS TY 
Sbjct: 1036 KAAEAGKMYEELLKNGWKPNVFTYNALIGGYSVSGSTDNAFASYGQMIVGGCPPNSSTYM 1095

Query: 69   VLVRGVL 75
             L   +L
Sbjct: 1096 QLPNQLL 1102


>gi|302756535|ref|XP_002961691.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
 gi|300170350|gb|EFJ36951.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
          Length = 545

 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 117/448 (26%), Positives = 213/448 (47%), Gaps = 47/448 (10%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           RV +AH  F         P+ VSY TL++G+ + G++  A  +F EM+  G+     +++
Sbjct: 117 RVEDAHLFFQSHMKNVFEPDEVSYNTLMNGFFKAGDVKKALALFGEMKDSGIAVLR-SHN 175

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDL-SVNNAAFANLVDSLCREGYVNEVFRIA 127
           +++RG+     +  A       WE  K+   + S N  ++  ++D LC+   V++   + 
Sbjct: 176 IVLRGLCSGGKISMA-------WEVFKDMSGIFSPNLISYTIMIDGLCKSRKVDKAITLF 228

Query: 128 EDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKH 187
           + M       +    G +ID L +  R   A  +    R +G  P++V+YN+++ GLCK 
Sbjct: 229 KQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMIDGLCKC 288

Query: 188 GGCMRAYQLLEEGIQFGYL-PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRI 246
           G    A  L ++ ++  +L P   TY  L+ GL   +  EKA ++ +             
Sbjct: 289 GRIENALTLYDDMVREPHLKPDMFTYSALINGLNLSNRGEKAYELYE------------- 335

Query: 247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV 306
                                  ML T C PDV+T NT+++G CK G  ++A+++   M 
Sbjct: 336 ----------------------EMLDTGCSPDVVTYNTLLDGLCKSGCEDKAMEIFRKMG 373

Query: 307 AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 366
            G  C P+ +T+T +I     V R+ +A+ L  + M  R   P  VT+  V++ L +  R
Sbjct: 374 VGNVCDPNVITYTVLIDRFCKVDRLGDAVKLAKE-MEGRSLLPDAVTFTTVIQKLCKESR 432

Query: 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAA 426
           ++EA E+F   +G     DS  +  ++ G C+  ++D+AK+  D ++          Y A
Sbjct: 433 IDEAHELFES-IGKTCKPDSVLFNTMLAGYCKITRIDDAKKLHDRMLDSGCAPTLATYTA 491

Query: 427 MIKGLCRSGKIHEAVHFLYELVDSGVTP 454
           ++ G CR+G+  +A+   +E+++ G  P
Sbjct: 492 LVTGFCRTGRYSDALIMYHEMIEMGFPP 519



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 113/448 (25%), Positives = 187/448 (41%), Gaps = 75/448 (16%)

Query: 122 EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
           EVF+ A    Q K  +  F C +++    ++ R   A        K    P  VSYN+++
Sbjct: 87  EVFQWAGK--QSKFTHNRFTCNNLLSVYVKARRVEDAHLFFQSHMKNVFEPDEVSYNTLM 144

Query: 182 HGLCKHGGCMRAYQLLEEGIQFG---------------------------------YLPS 208
           +G  K G   +A  L  E    G                                 + P+
Sbjct: 145 NGFFKAGDVKKALALFGEMKDSGIAVLRSHNIVLRGLCSGGKISMAWEVFKDMSGIFSPN 204

Query: 209 EHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLV 268
             +Y ++++GLC    ++KA  + + M+ K            +  L   +   E  ++  
Sbjct: 205 LISYTIMIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFE 264

Query: 269 FMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNV 328
                 C P V+T NT+I+G CK GRIE AL + +DMV      PD  T++ +I GL N+
Sbjct: 265 EARAKGCHPTVVTYNTMIDGLCKCGRIENALTLYDDMVREPHLKPDMFTYSALINGL-NL 323

Query: 329 GRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADST- 387
               E    LY+ M   G SP +VTYN +L GL +    ++A E+F  M G+G V D   
Sbjct: 324 SNRGEKAYELYEEMLDTGCSPDVVTYNTLLDGLCKSGCEDKAMEIFRKM-GVGNVCDPNV 382

Query: 388 -TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE 446
            TY ++ID  C+ ++L +A +   ++   S + D   +  +I+ LC+  +I EA H L+E
Sbjct: 383 ITYTVLIDRFCKVDRLGDAVKLAKEMEGRSLLPDAVTFTTVIQKLCKESRIDEA-HELFE 441

Query: 447 -----------------------------------LVDSGVTPNIVCYNVVIDGACKLSM 471
                                              ++DSG  P +  Y  ++ G C+   
Sbjct: 442 SIGKTCKPDSVLFNTMLAGYCKITRIDDAKKLHDRMLDSGCAPTLATYTALVTGFCRTGR 501

Query: 472 KREAYQILREMRKNGLNPDAVTWRILDK 499
             +A  +  EM + G  P+     ++D+
Sbjct: 502 YSDALIMYHEMIEMGFPPERHLAELVDR 529



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 86/353 (24%), Positives = 159/353 (45%), Gaps = 49/353 (13%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   +V +A  LF  M  +   P+VV+Y  LI G  +   +  AY +F+E R  G 
Sbjct: 212 IDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGC 271

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P  +TY+ ++ G+ +   +E A      L++ M  E  L  +   ++ L++ L      
Sbjct: 272 HPTVVTYNTMIDGLCKCGRIENA----LTLYDDMVREPHLKPDMFTYSALINGLNLSNRG 327

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGL----TPSLVS 176
            + + + E+M       +      ++D LC+SG      + + + RK G+     P++++
Sbjct: 328 EKAYELYEEMLDTGCSPDVVTYNTLLDGLCKSG---CEDKAMEIFRKMGVGNVCDPNVIT 384

Query: 177 YNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFML 236
           Y  ++   CK      A +L +E      LP   T+  +++ LC ES +++A ++ +   
Sbjct: 385 YTVLIDRFCKVDRLGDAVKLAKEMEGRSLLPDAVTFTTVIQKLCKESRIDEAHELFE--- 441

Query: 237 SKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIE 296
                                             +   C+PD +  NT++ G+CK+ RI+
Sbjct: 442 ---------------------------------SIGKTCKPDSVLFNTMLAGYCKITRID 468

Query: 297 EALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSP 349
           +A K L+D +    CAP   T+T ++ G    GR  +AL ++Y  M + G+ P
Sbjct: 469 DA-KKLHDRMLDSGCAPTLATYTALVTGFCRTGRYSDAL-IMYHEMIEMGFPP 519


>gi|255556466|ref|XP_002519267.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541582|gb|EEF43131.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 665

 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 127/504 (25%), Positives = 224/504 (44%), Gaps = 54/504 (10%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D +   +R      ++ +MK  G  PNV +Y  L+   C+   +D A K+  EM + G 
Sbjct: 156 LDAMLSENRFQMIEPIYSNMKRDGKEPNVYTYNILLKALCKNNRVDGACKLLVEMSNKGC 215

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ ++Y+ ++  + +   VE A  L  +       + ++SV NA    L++  CRE  V
Sbjct: 216 EPDVVSYTTVISSMSKLGKVEEARELSIRF------QPNVSVYNA----LINGFCREYKV 265

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNH------------GASRVVYV---- 164
            EVF +   M +            +I SL   G               G S  VY     
Sbjct: 266 KEVFLLLGQMVEKGIDPNVITYSTVISSLSGIGNVELALAVWAKMFVRGCSPNVYTFTSL 325

Query: 165 -------------------MRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY 205
                              M + G  P++V+YN+++HGLC HG    A  +  +  + G 
Sbjct: 326 MKGYFMRGRVLEALNIWNRMAEEGFEPNVVAYNTLIHGLCSHGKMGEAVSVSSKMERNGC 385

Query: 206 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 265
            P+  TY  L++G     DL  A ++   M++   +    +    +  LC     ++  +
Sbjct: 386 SPNVSTYGALIDGFAKAGDLVGASEIWNKMMTNGCIPNVVVYTSMVNVLCRSSMFSQAWS 445

Query: 266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 325
           ++  M    C P+ +T NT I G C  GR+E A+ +   M     C+P+  T+  ++ GL
Sbjct: 446 LIEKMSTDNCPPNTVTFNTFIKGLCCSGRVECAINLFCQM-EQYGCSPNIKTYNEVLDGL 504

Query: 326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 385
           L   RI+EAL L+ + M ++G    +VTYN +  G   + + EEA ++   ML  GV  D
Sbjct: 505 LKENRIKEALELVTE-MEEKGMELNLVTYNTIFGGFCNVGKFEEALKLLGKMLVGGVKPD 563

Query: 386 STTYAIVIDGLCESNQLDEAKRFWDDIV----WPSNIHDNYVYAAMIKGLCRSGKIHEAV 441
           + TY  +    C   ++  A +  D +     W   + +   Y +++ G+C    + EAV
Sbjct: 564 AITYNTLTYAYCMQGKVKTAIQLLDKLSAGGKW---VPEVAAYTSLLWGICNQIGVEEAV 620

Query: 442 HFLYELVDSGVTPNIVCYNVVIDG 465
            +L ++++ G+  N   +N ++ G
Sbjct: 621 LYLDKMLNEGICLNAATWNALVRG 644



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 115/471 (24%), Positives = 226/471 (47%), Gaps = 18/471 (3%)

Query: 30  VSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFK 89
           ++Y  +I    R  ++D    +  +M+  G+  +   +  ++    R    E+A     K
Sbjct: 80  LTYQIMIEKLGRECDVDGVQYLLQQMKLEGISCSEDLFINVINTYRRVGLAEQA----LK 135

Query: 90  LWERMKE---EEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMI 146
           ++ R++E   +  + + N    +L+D++  E     +  I  +M +       +    ++
Sbjct: 136 MFYRIREFGCQPTVKIYN----HLLDAMLSENRFQMIEPIYSNMKRDGKEPNVYTYNILL 191

Query: 147 DSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL 206
            +LC++ R  GA +++  M  +G  P +VSY +++  + K G    A +L    I+F   
Sbjct: 192 KALCKNNRVDGACKLLVEMSNKGCEPDVVSYTTVISSMSKLGKVEEAREL---SIRFQ-- 246

Query: 207 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 266
           P+   Y  L+ G C E  +++   +L  M+ K         +  + +L  I N    L V
Sbjct: 247 PNVSVYNALINGFCREYKVKEVFLLLGQMVEKGIDPNVITYSTVISSLSGIGNVELALAV 306

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
              M    C P+V T  +++ G+   GR+ EAL + N M    F  P+ V + T+I GL 
Sbjct: 307 WAKMFVRGCSPNVYTFTSLMKGYFMRGRVLEALNIWNRMAEEGF-EPNVVAYNTLIHGLC 365

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
           + G++ EA+++  + M + G SP + TY A++ G  +   +  A E++N M+  G + + 
Sbjct: 366 SHGKMGEAVSVSSK-MERNGCSPNVSTYGALIDGFAKAGDLVGASEIWNKMMTNGCIPNV 424

Query: 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE 446
             Y  +++ LC S+   +A    + +   +   +   +   IKGLC SG++  A++   +
Sbjct: 425 VVYTSMVNVLCRSSMFSQAWSLIEKMSTDNCPPNTVTFNTFIKGLCCSGRVECAINLFCQ 484

Query: 447 LVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           +   G +PNI  YN V+DG  K +  +EA +++ EM + G+  + VT+  +
Sbjct: 485 MEQYGCSPNIKTYNEVLDGLLKENRIKEALELVTEMEEKGMELNLVTYNTI 535



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 123/482 (25%), Positives = 218/482 (45%), Gaps = 38/482 (7%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTT-------------------------- 34
           +  LC  +RV  A KL  +M ++G  P+VVSYTT                          
Sbjct: 191 LKALCKNNRVDGACKLLVEMSNKGCEPDVVSYTTVISSMSKLGKVEEARELSIRFQPNVS 250

Query: 35  ----LIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKL 90
               LI+G+CR  ++   + +  +M   G+ PN +TYS ++  +    +VE A  +  K+
Sbjct: 251 VYNALINGFCREYKVKEVFLLLGQMVEKGIDPNVITYSTVISSLSGIGNVELALAVWAKM 310

Query: 91  WERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC 150
           + R       S N   F +L+      G V E   I   M +        A   +I  LC
Sbjct: 311 FVR-----GCSPNVYTFTSLMKGYFMRGRVLEALNIWNRMAEEGFEPNVVAYNTLIHGLC 365

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
             G+   A  V   M + G +P++ +Y +++ G  K G  + A ++  + +  G +P+  
Sbjct: 366 SHGKMGEAVSVSSKMERNGCSPNVSTYGALIDGFAKAGDLVGASEIWNKMMTNGCIPNVV 425

Query: 211 TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM 270
            Y  +V  LC  S   +A  +++ M +      T   N +++ LC        +N+   M
Sbjct: 426 VYTSMVNVLCRSSMFSQAWSLIEKMSTDNCPPNTVTFNTFIKGLCCSGRVECAINLFCQM 485

Query: 271 LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR 330
            Q  C P++ T N V++G  K  RI+EAL+++ +M   K    + VT+ TI  G  NVG+
Sbjct: 486 EQYGCSPNIKTYNEVLDGLLKENRIKEALELVTEM-EEKGMELNLVTYNTIFGGFCNVGK 544

Query: 331 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG-VVADSTTY 389
            +EAL LL +++   G  P  +TYN +        +V+ A ++ + +   G  V +   Y
Sbjct: 545 FEEALKLLGKML-VGGVKPDAITYNTLTYAYCMQGKVKTAIQLLDKLSAGGKWVPEVAAY 603

Query: 390 AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449
             ++ G+C    ++EA  + D ++      +   + A+++GL  S      +H L +++ 
Sbjct: 604 TSLLWGICNQIGVEEAVLYLDKMLNEGICLNAATWNALVRGLFNSLGHLGPIHILDDILT 663

Query: 450 SG 451
           SG
Sbjct: 664 SG 665



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 112/233 (48%), Gaps = 11/233 (4%)

Query: 274 QCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKF-CAPDAVTFTTIIFGLLNVGRIQ 332
            C  D+     VIN + ++G  E+ALK+   +   +F C P    +  ++  +L+  R Q
Sbjct: 111 SCSEDLFI--NVINTYRRVGLAEQALKMFYRI--REFGCQPTVKIYNHLLDAMLSENRFQ 166

Query: 333 EALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIV 392
             +  +Y  M + G  P + TYN +L+ L +  RV+ A ++   M   G   D  +Y  V
Sbjct: 167 -MIEPIYSNMKRDGKEPNVYTYNILLKALCKNNRVDGACKLLVEMSNKGCEPDVVSYTTV 225

Query: 393 IDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGV 452
           I  + +  +++EA+     I +  N+    VY A+I G CR  K+ E    L ++V+ G+
Sbjct: 226 ISSMSKLGKVEEAREL--SIRFQPNVS---VYNALINGFCREYKVKEVFLLLGQMVEKGI 280

Query: 453 TPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
            PN++ Y+ VI     +     A  +  +M   G +P+  T+  L K +  RG
Sbjct: 281 DPNVITYSTVISSLSGIGNVELALAVWAKMFVRGCSPNVYTFTSLMKGYFMRG 333


>gi|218184398|gb|EEC66825.1| hypothetical protein OsI_33257 [Oryza sativa Indica Group]
          Length = 948

 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 117/424 (27%), Positives = 193/424 (45%), Gaps = 68/424 (16%)

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
           F  G    +LCR GR + A  ++  M + G  P  V Y +++H LC  GG   A  LL E
Sbjct: 176 FTFGVAARALCRLGRANEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNE 235

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
            +  G     +T+  +V G+CG   + +A +++  M++K  +         L+ LC ++ 
Sbjct: 236 MLLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQ 295

Query: 260 PTEL---------LNVLVF----------------------MLQTQCQPDVITLNTVING 288
             E          LNV++F                      M    CQPD  T + +++G
Sbjct: 296 ADEARAMLGRVPELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHG 355

Query: 289 FCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTI--------------------------- 321
            CK+GRI  A+++L +M    F AP+ VT+T +                           
Sbjct: 356 LCKLGRISSAVRLLREMEKKGF-APNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTL 414

Query: 322 --------IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEV 373
                   I+ L   GR+ EA+ L+ Q M  +G +P I +YN ++  L    ++EEA+ +
Sbjct: 415 NSQGYNGMIYALCKDGRMDEAMGLI-QEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHM 473

Query: 374 FNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR 433
           F  +L  GVVA+  TY  +I  L    +  +A R   +++      D   Y  +IK +C+
Sbjct: 474 FENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCK 533

Query: 434 SGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVT 493
            G +  ++  L E+ + G+ PN V YN++I   CK    R+A ++ ++M   GL PD VT
Sbjct: 534 DGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVT 593

Query: 494 WRIL 497
           +  L
Sbjct: 594 YNTL 597



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 128/476 (26%), Positives = 224/476 (47%), Gaps = 11/476 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC L R  EA  L   M   G VP+ V Y T+IH  C  G +  A  + +EM   G   +
Sbjct: 185 LCRLGRANEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAAD 244

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             T+  +VRG+     V  A     +L +RM  +  +      +  L+  LCR    +E 
Sbjct: 245 VNTFDDVVRGMCGLGRVREAA----RLVDRMMTKGCMP-GVMTYGFLLQGLCRVRQADEA 299

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             +   +P+   V        +I      G+   A+ +   M  +G  P   +Y+ ++HG
Sbjct: 300 RAMLGRVPELNVV----LFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHG 355

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LCK G    A +LL E  + G+ P+  TY +++   C     +  R +L+ M +K     
Sbjct: 356 LCKLGRISSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLN 415

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
           ++  N  + ALC      E + ++  M    C PD+ + NT+I   C   ++EEA  +  
Sbjct: 416 SQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFE 475

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           +++     A + +T+ TII  LL  GR Q+A+ L  + M   G S  +V+YN +++ + +
Sbjct: 476 NLLEEGVVA-NGITYNTIIHALLRDGRWQDAVRLAKE-MILHGCSLDVVSYNGLIKAMCK 533

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
              V+ +  +   M   G+  ++ +Y I+I  LC+  ++ +A      ++      D   
Sbjct: 534 DGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVT 593

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           Y  +I GLC+ G +H A++ L +L +  V P+I+ YN++I   CK+ +  +A  +L
Sbjct: 594 YNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHCKVRLLDDAAMLL 649



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 109/424 (25%), Positives = 205/424 (48%), Gaps = 41/424 (9%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRT--------------------- 42
           +CGL RV EA +L   M ++G +P V++Y  L+ G CR                      
Sbjct: 255 MCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPELNVVLF 314

Query: 43  ----------GEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWE 92
                     G++  A ++++ M   G  P++ TYS+L+ G+ +   +  A  L+     
Sbjct: 315 NTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRISSAVRLL----- 369

Query: 93  RMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDM-PQGKSVNEEFACGHMIDSLCR 151
           R  E++  + N   +  ++ S C+ G  ++   + E+M  +G ++N +   G MI +LC+
Sbjct: 370 REMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNG-MIYALCK 428

Query: 152 SGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHT 211
            GR   A  ++  MR +G  P + SYN+I++ LC +     A  + E  ++ G + +  T
Sbjct: 429 DGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGIT 488

Query: 212 YKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFML 271
           Y  ++  L  +   + A ++ + M+           N  ++A+C   N    L +L  M 
Sbjct: 489 YNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMA 548

Query: 272 QTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRI 331
           +   +P+ ++ N +I+  CK  R+ +AL++   M+  +  APD VT+ T+I GL  +G +
Sbjct: 549 EKGIKPNNVSYNILISELCKERRVRDALELSKQML-NQGLAPDIVTYNTLINGLCKMGWM 607

Query: 332 QEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN-CMLGIGVVADSTTYA 390
             ALNLL ++  +  + P I+TYN ++    ++R +++A  + N  M  +  V D     
Sbjct: 608 HAALNLLEKLHNENVH-PDIITYNILISWHCKVRLLDDAAMLLNRAMAAVCPVGDRRIMQ 666

Query: 391 IVID 394
           I+ D
Sbjct: 667 ILPD 670



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/342 (26%), Positives = 157/342 (45%), Gaps = 41/342 (11%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M  LC L R+  A +L  +M+ +G  PNVV+YT ++H +C+ G  D    + +EM   G+
Sbjct: 353 MHGLCKLGRISSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGL 412

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             NS  Y+ ++  + +   ++ A  L+ ++       +  + +  ++  ++  LC    +
Sbjct: 413 TLNSQGYNGMIYALCKDGRMDEAMGLIQEM-----RSQGCNPDICSYNTIIYHLCNNEQM 467

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E   + E++ +   V        +I +L R GR   A R+   M   G +  +VSYN +
Sbjct: 468 EEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGL 527

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +  +CK G   R+  LLEE  + G  P+  +Y +L+  LC E    + R  L+  LSK+ 
Sbjct: 528 IKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKE---RRVRDALE--LSKQ- 581

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                        ML     PD++T NT+ING CKMG +  AL 
Sbjct: 582 -----------------------------MLNQGLAPDIVTYNTLINGLCKMGWMHAALN 612

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVM 342
           +L + +  +   PD +T+  +I     V  + +A  LL + M
Sbjct: 613 LL-EKLHNENVHPDIITYNILISWHCKVRLLDDAAMLLNRAM 653



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 80/182 (43%)

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           AL +L+ +       P   ++  ++  L       +AL L  +++ +    P   T+   
Sbjct: 122 ALHLLDQLPRRFGVQPSFRSYNVVLSVLARADCHADALALYRRMVHRDRVPPTTFTFGVA 181

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 417
            R L RL R  EA  +   M   G V D+  Y  VI  LC+   + EA    ++++    
Sbjct: 182 ARALCRLGRANEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGC 241

Query: 418 IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQ 477
             D   +  +++G+C  G++ EA   +  ++  G  P ++ Y  ++ G C++    EA  
Sbjct: 242 AADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARA 301

Query: 478 IL 479
           +L
Sbjct: 302 ML 303


>gi|302759663|ref|XP_002963254.1| hypothetical protein SELMODRAFT_79771 [Selaginella moellendorffii]
 gi|300168522|gb|EFJ35125.1| hypothetical protein SELMODRAFT_79771 [Selaginella moellendorffii]
          Length = 495

 Score =  171 bits (434), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 120/445 (26%), Positives = 204/445 (45%), Gaps = 50/445 (11%)

Query: 28  NVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLM 87
            V +Y   ++   + G    A K+FD+M +   LPN  TY +++RG+      + A  L+
Sbjct: 36  TVFTYNAYLNALVKGGHGSKARKIFDDMLYKECLPNIYTYGIVLRGLCDDAKTDAALELL 95

Query: 88  FKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMID 147
             +  +M       VN      LV  LC+ G V+  + + + +    S++   +   +  
Sbjct: 96  QDMESKMLTPTTFIVN-----MLVSCLCKNGKVDAAYELYKRLSDECSLD-RISYNMLTY 149

Query: 148 SLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQ----F 203
            LC++ +   A  V   M +  + PSL++YN +++G C+ G   +A  LLEE I+     
Sbjct: 150 GLCKADQIDRALAVFGEMEENAVVPSLLTYNGLLYGYCRAGRMEQAMTLLEEMIEGKKGS 209

Query: 204 GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTEL 263
             +P  ++Y  ++ G C    L  AR VL+                              
Sbjct: 210 DVVPDMYSYNTVISGFCKARQLPTARYVLR------------------------------ 239

Query: 264 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF 323
                 M+++ C P+V+T NT+++G C  G+++EA  +   MV  + C P AVT+T +I 
Sbjct: 240 -----RMIKSGCSPNVVTFNTLLDGLCLTGKLDEANAMFEYMVE-RNCEPTAVTYTVLIT 293

Query: 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 383
           G     RI +A N  +  M +RG  P + TY A++ GL    +VE+A E+   M   G  
Sbjct: 294 GHARALRIDKA-NDYFVDMLRRGVEPNVYTYTALIGGLCDANKVEDALEILKRMSSTGRE 352

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH---DNYVYAAMIKGLCRSGKIHEA 440
            +  TY  VI  LC+  Q++ A + ++D +         D+Y Y+ +I  LCR  K  EA
Sbjct: 353 PNVVTYTRVIGALCKGGQIERATKLFNDAMGSRTAKCKPDSYAYSTIIYWLCRQSKFLEA 412

Query: 441 VHFLYELVDSGVTPNIVCYNVVIDG 465
             +   +V+S +      Y  + DG
Sbjct: 413 YEYFLRMVESKLVAKPHIYKAMADG 437



 Score =  151 bits (381), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 96/342 (28%), Positives = 176/342 (51%), Gaps = 8/342 (2%)

Query: 158 ASRVV-YVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLV 216
           ASRV  +  R+     ++ +YN+ ++ L K G   +A ++ ++ +    LP+ +TY +++
Sbjct: 20  ASRVFKWAARQEDFEHTVFTYNAYLNALVKGGHGSKARKIFDDMLYKECLPNIYTYGIVL 79

Query: 217 EGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN-PTELLNVLVFMLQTQC 275
            GLC ++  + A ++LQ M SK     T I N+ +  LC  KN   +    L   L  +C
Sbjct: 80  RGLCDDAKTDAALELLQDMESKMLTPTTFIVNMLVSCLC--KNGKVDAAYELYKRLSDEC 137

Query: 276 QPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEAL 335
             D I+ N +  G CK  +I+ AL V  +M       P  +T+  +++G    GR+++A+
Sbjct: 138 SLDRISYNMLTYGLCKADQIDRALAVFGEMEENAV-VPSLLTYNGLLYGYCRAGRMEQAM 196

Query: 336 NLLYQVMPQRGYS---PGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIV 392
            LL +++  +  S   P + +YN V+ G  + R++  A+ V   M+  G   +  T+  +
Sbjct: 197 TLLEEMIEGKKGSDVVPDMYSYNTVISGFCKARQLPTARYVLRRMIKSGCSPNVVTFNTL 256

Query: 393 IDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGV 452
           +DGLC + +LDEA   ++ +V  +       Y  +I G  R+ +I +A  +  +++  GV
Sbjct: 257 LDGLCLTGKLDEANAMFEYMVERNCEPTAVTYTVLITGHARALRIDKANDYFVDMLRRGV 316

Query: 453 TPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
            PN+  Y  +I G C  +   +A +IL+ M   G  P+ VT+
Sbjct: 317 EPNVYTYTALIGGLCDANKVEDALEILKRMSSTGREPNVVTY 358



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 104/428 (24%), Positives = 194/428 (45%), Gaps = 50/428 (11%)

Query: 11  GEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVL 70
            +A K+F DM  +  +PN+ +Y  ++ G C   + D A ++  +M    + P +   ++L
Sbjct: 54  SKARKIFDDMLYKECLPNIYTYGIVLRGLCDDAKTDAALELLQDMESKMLTPTTFIVNML 113

Query: 71  VRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDM 130
           V  + +   V+ A    ++L++R+ +E   S++  ++  L   LC+   ++    +  +M
Sbjct: 114 VSCLCKNGKVDAA----YELYKRLSDE--CSLDRISYNMLTYGLCKADQIDRALAVFGEM 167

Query: 131 PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGC 190
            +   V                                   PSL++YN +++G C+ G  
Sbjct: 168 EENAVV-----------------------------------PSLLTYNGLLYGYCRAGRM 192

Query: 191 MRAYQLLEEGIQ----FGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRI 246
            +A  LLEE I+       +P  ++Y  ++ G C    L  AR VL+ M+          
Sbjct: 193 EQAMTLLEEMIEGKKGSDVVPDMYSYNTVISGFCKARQLPTARYVLRRMIKSGCSPNVVT 252

Query: 247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV 306
            N  L  LCL     E   +  +M++  C+P  +T   +I G  +  RI++A     DM+
Sbjct: 253 FNTLLDGLCLTGKLDEANAMFEYMVERNCEPTAVTYTVLITGHARALRIDKANDYFVDML 312

Query: 307 AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 366
             +   P+  T+T +I GL +  ++++AL +L + M   G  P +VTY  V+  L +  +
Sbjct: 313 R-RGVEPNVYTYTALIGGLCDANKVEDALEIL-KRMSSTGREPNVVTYTRVIGALCKGGQ 370

Query: 367 VEEAKEVFNCMLGIGVV---ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
           +E A ++FN  +G        DS  Y+ +I  LC  ++  EA  ++  +V    +   ++
Sbjct: 371 IERATKLFNDAMGSRTAKCKPDSYAYSTIIYWLCRQSKFLEAYEYFLRMVESKLVAKPHI 430

Query: 424 YAAMIKGL 431
           Y AM  GL
Sbjct: 431 YKAMADGL 438



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 107/409 (26%), Positives = 191/409 (46%), Gaps = 10/409 (2%)

Query: 86  LMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHM 145
           L  ++++    +ED       +   +++L + G+ ++  +I +DM   + +   +  G +
Sbjct: 19  LASRVFKWAARQEDFEHTVFTYNAYLNALVKGGHGSKARKIFDDMLYKECLPNIYTYGIV 78

Query: 146 IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY 205
           +  LC   +   A  ++  M  + LTP+    N +V  LCK+G    AY+L +       
Sbjct: 79  LRGLCDDAKTDAALELLQDMESKMLTPTTFIVNMLVSCLCKNGKVDAAYELYKRLSDECS 138

Query: 206 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 265
           L    +Y +L  GLC    +++A  V   M     V      N  L   C      + + 
Sbjct: 139 L-DRISYNMLTYGLCKADQIDRALAVFGEMEENAVVPSLLTYNGLLYGYCRAGRMEQAMT 197

Query: 266 VLVFMLQ----TQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTI 321
           +L  M++    +   PD+ + NTVI+GFCK  ++  A  VL  M+    C+P+ VTF T+
Sbjct: 198 LLEEMIEGKKGSDVVPDMYSYNTVISGFCKARQLPTARYVLRRMIKSG-CSPNVVTFNTL 256

Query: 322 IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG 381
           + GL   G++ EA N +++ M +R   P  VTY  ++ G  R  R+++A + F  ML  G
Sbjct: 257 LDGLCLTGKLDEA-NAMFEYMVERNCEPTAVTYTVLITGHARALRIDKANDYFVDMLRRG 315

Query: 382 VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAV 441
           V  +  TY  +I GLC++N++++A      +       +   Y  +I  LC+ G+I  A 
Sbjct: 316 VEPNVYTYTALIGGLCDANKVEDALEILKRMSSTGREPNVVTYTRVIGALCKGGQIERAT 375

Query: 442 HFLYELVDSGVT---PNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
               + + S      P+   Y+ +I   C+ S   EAY+    M ++ L
Sbjct: 376 KLFNDAMGSRTAKCKPDSYAYSTIIYWLCRQSKFLEAYEYFLRMVESKL 424



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 94/378 (24%), Positives = 178/378 (47%), Gaps = 17/378 (4%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMR-HCGVLP 62
           LC  ++   A +L  DM+S+   P       L+   C+ G++D AY+++  +   C +  
Sbjct: 82  LCDDAKTDAALELLQDMESKMLTPTTFIVNMLVSCLCKNGKVDAAYELYKRLSDECSL-- 139

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           + ++Y++L  G+ +   ++RA  +  ++     EE  +  +   +  L+   CR G + +
Sbjct: 140 DRISYNMLTYGLCKADQIDRALAVFGEM-----EENAVVPSLLTYNGLLYGYCRAGRMEQ 194

Query: 123 VFRIAEDMPQGKS----VNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
              + E+M +GK     V + ++   +I   C++ +   A  V+  M K G +P++V++N
Sbjct: 195 AMTLLEEMIEGKKGSDVVPDMYSYNTVISGFCKARQLPTARYVLRRMIKSGCSPNVVTFN 254

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
           +++ GLC  G    A  + E  ++    P+  TY VL+ G      ++KA      ML +
Sbjct: 255 TLLDGLCLTGKLDEANAMFEYMVERNCEPTAVTYTVLITGHARALRIDKANDYFVDMLRR 314

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
                       +  LC      + L +L  M  T  +P+V+T   VI   CK G+IE A
Sbjct: 315 GVEPNVYTYTALIGGLCDANKVEDALEILKRMSSTGREPNVVTYTRVIGALCKGGQIERA 374

Query: 299 LKVLNDMVAGKF--CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYS-PGIVTYN 355
            K+ ND +  +   C PD+  ++TII+ L    +  EA     +++  +  + P I  Y 
Sbjct: 375 TKLFNDAMGSRTAKCKPDSYAYSTIIYWLCRQSKFLEAYEYFLRMVESKLVAKPHI--YK 432

Query: 356 AVLRGLFRLRRVEEAKEV 373
           A+  GL  ++  E+ + V
Sbjct: 433 AMADGLELVQETEKVERV 450



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 136/291 (46%), Gaps = 13/291 (4%)

Query: 228 ARKVLQFMLSKKDVDRTRIC-NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVI 286
           A +V ++   ++D + T    N YL AL    + ++   +   ML  +C P++ T   V+
Sbjct: 20  ASRVFKWAARQEDFEHTVFTYNAYLNALVKGGHGSKARKIFDDMLYKECLPNIYTYGIVL 79

Query: 287 NGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
            G C   + + AL++L DM   K   P       ++  L   G++  A  L  ++  +  
Sbjct: 80  RGLCDDAKTDAALELLQDM-ESKMLTPTTFIVNMLVSCLCKNGKVDAAYELYKRLSDE-- 136

Query: 347 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
            S   ++YN +  GL +  +++ A  VF  M    VV    TY  ++ G C + ++++A 
Sbjct: 137 CSLDRISYNMLTYGLCKADQIDRALAVFGEMEENAVVPSLLTYNGLLYGYCRAGRMEQAM 196

Query: 407 RFWDDIVWPSN----IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVV 462
              ++++        + D Y Y  +I G C++ ++  A + L  ++ SG +PN+V +N +
Sbjct: 197 TLLEEMIEGKKGSDVVPDMYSYNTVISGFCKARQLPTARYVLRRMIKSGCSPNVVTFNTL 256

Query: 463 IDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG-----NRGNDF 508
           +DG C      EA  +   M +    P AVT+ +L   H      ++ ND+
Sbjct: 257 LDGLCLTGKLDEANAMFEYMVERNCEPTAVTYTVLITGHARALRIDKANDY 307



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 53/231 (22%), Positives = 96/231 (41%), Gaps = 37/231 (16%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   ++ EA+ +F  M  R   P  V+YT LI G+ R   +D A   F +M   GV
Sbjct: 257 LDGLCLTGKLDEANAMFEYMVERNCEPTAVTYTVLITGHARALRIDKANDYFVDMLRRGV 316

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN  TY+ L+ G+     VE A  ++ ++    +E      N   +  ++ +LC+ G +
Sbjct: 317 EPNVYTYTALIGGLCDANKVEDALEILKRMSSTGREP-----NVVTYTRVIGALCKGGQI 371

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
               ++  D    ++              C+                    P   +Y++I
Sbjct: 372 ERATKLFNDAMGSRTAK------------CK--------------------PDSYAYSTI 399

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKV 231
           ++ LC+    + AY+     ++   +   H YK + +GL    + EK  +V
Sbjct: 400 IYWLCRQSKFLEAYEYFLRMVESKLVAKPHIYKAMADGLELVQETEKVERV 450



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 82/174 (47%), Gaps = 1/174 (0%)

Query: 321 IIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI 380
           +I  L N+   + A  +      Q  +   + TYNA L  L +     +A+++F+ ML  
Sbjct: 7   VIHVLENIKSPKLASRVFKWAARQEDFEHTVFTYNAYLNALVKGGHGSKARKIFDDMLYK 66

Query: 381 GVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEA 440
             + +  TY IV+ GLC+  + D A     D+         ++   ++  LC++GK+ +A
Sbjct: 67  ECLPNIYTYGIVLRGLCDDAKTDAALELLQDMESKMLTPTTFIVNMLVSCLCKNGKV-DA 125

Query: 441 VHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
            + LY+ +    + + + YN++  G CK      A  +  EM +N + P  +T+
Sbjct: 126 AYELYKRLSDECSLDRISYNMLTYGLCKADQIDRALAVFGEMEENAVVPSLLTY 179


>gi|326490085|dbj|BAJ94116.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 641

 Score =  171 bits (434), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 115/451 (25%), Positives = 214/451 (47%), Gaps = 13/451 (2%)

Query: 35  LIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVL---RTRDVERANVLMFKLW 91
           ++   C  G +D   ++  ++   G  P+ ++Y+ +++G+    R  DVE   V M ++ 
Sbjct: 184 VVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVLKGLCMAKRWDDVEELMVEMVRV- 242

Query: 92  ERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCR 151
                      N A F  L+  LCR G   +V      MP+     +      +ID +C+
Sbjct: 243 -------GCPPNVATFNTLIAYLCRNGLFEQVHEALSQMPEHGCTPDLRMYATIIDGICK 295

Query: 152 SGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHT 211
            G +  A+ ++  M   GL P++V YN+++ GLC       A  LL E  Q      + T
Sbjct: 296 DGHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVT 355

Query: 212 YKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFML 271
           + +LV+  C    +++  ++L+ ML    +         +   C      E + +L  M 
Sbjct: 356 FNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMS 415

Query: 272 QTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRI 331
              C+P+ I+   V+ G C+  R  +A ++++ M+  + C P+ VTF T+I  +   G +
Sbjct: 416 ACGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQ-QGCLPNPVTFNTLINFMCKKGLV 474

Query: 332 QEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAI 391
           ++A+ LL Q++   G SP +++Y+ V+ GL +  + EEA E+ N M+  G+  ++  Y+ 
Sbjct: 475 EQAIELLKQML-VNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNTIIYSS 533

Query: 392 VIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 451
           +   L    + D+  + +D I   +   D  +Y A+I  LC+  +   A+ F   +V +G
Sbjct: 534 MASALSREGRTDKIIQMFDSIQDATVRSDAALYNAVISSLCKRWETDRAIDFFAYMVSNG 593

Query: 452 VTPNIVCYNVVIDGACKLSMKREAYQILREM 482
             PN   Y ++I G     + REA  +L E+
Sbjct: 594 CMPNESTYTILIRGLASEGLVREAQDLLSEL 624



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 124/503 (24%), Positives = 203/503 (40%), Gaps = 83/503 (16%)

Query: 3   QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
            LC   R  +A +    + + G    VV+Y  +I GYCR G++  A ++   +    V P
Sbjct: 53  SLCAAGRTADAARA---LDTAGDAAGVVAYNAMIAGYCRAGQVAAARRLAAAVP---VPP 106

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           N+ TY  +VR                                        SLC  G + +
Sbjct: 107 NAYTYFPIVR----------------------------------------SLCARGLIAD 126

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
              + ++MP          C  ++++ CR G    A R + V+  +G T    + N +V 
Sbjct: 127 ALTVLDEMPLRGCAATPPMCHVILEAACRGGGFRSAVRALQVLHAKGCTLDSGNCNLVVS 186

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
            +C+ G      +LL +   FG  P   +Y                              
Sbjct: 187 AICEQGCVDEGVELLRKLPSFGCEPDIVSY------------------------------ 216

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
                N  L+ LC+ K   ++  ++V M++  C P+V T NT+I   C+ G  E+  + L
Sbjct: 217 -----NAVLKGLCMAKRWDDVEELMVEMVRVGCPPNVATFNTLIAYLCRNGLFEQVHEAL 271

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
           + M     C PD   + TII G+   G   E  N +   MP  G  P +V YN VL+GL 
Sbjct: 272 SQM-PEHGCTPDLRMYATIIDGICKDGH-HEVANDILSRMPSYGLKPNVVCYNTVLKGLC 329

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
              R EEA+++   M       D  T+ I++D  C++  +D      + ++    I D  
Sbjct: 330 SAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVI 389

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
            Y  +I G C+ G + EAV  L  +   G  PN + Y +V+ G C+     +A +++  M
Sbjct: 390 TYTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGLCRAERWVDAQELISHM 449

Query: 483 RKNGLNPDAVTWRILDKLHGNRG 505
            + G  P+ VT+  L      +G
Sbjct: 450 IQQGCLPNPVTFNTLINFMCKKG 472



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 105/436 (24%), Positives = 188/436 (43%), Gaps = 77/436 (17%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           + H+    M   G  P++  Y T+I G C+ G  +VA  +   M   G+ PN + Y+ ++
Sbjct: 266 QVHEALSQMPEHGCTPDLRMYATIIDGICKDGHHEVANDILSRMPSYGLKPNVVCYNTVL 325

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP 131
           +G+      E A  L+ ++++     ED  +++  F  LVD  C+ G V+ V  + E M 
Sbjct: 326 KGLCSAERWEEAEDLLAEMFQ-----EDCPLDDVTFNILVDFFCQNGLVDRVIELLEQML 380

Query: 132 QGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCM 191
           +   + +      +I+  C+ G    A  ++  M   G  P+ +SY  ++ GLC+    +
Sbjct: 381 EHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGLCRAERWV 440

Query: 192 RAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYL 251
            A +L+   IQ G LP+  T+  L+  +C +  +E+A ++L+ ML               
Sbjct: 441 DAQELISHMIQQGCLPNPVTFNTLINFMCKKGLVEQAIELLKQMLVNG------------ 488

Query: 252 RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC 311
                                  C PD+I+ +TVI+G  K G+ EEAL++LN M+     
Sbjct: 489 -----------------------CSPDLISYSTVIDGLGKAGKTEEALELLNVMI----- 520

Query: 312 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK 371
                                            +G +P  + Y+++   L R  R ++  
Sbjct: 521 --------------------------------NKGITPNTIIYSSMASALSREGRTDKII 548

Query: 372 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 431
           ++F+ +    V +D+  Y  VI  LC+  + D A  F+  +V    + +   Y  +I+GL
Sbjct: 549 QMFDSIQDATVRSDAALYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTILIRGL 608

Query: 432 CRSGKIHEAVHFLYEL 447
              G + EA   L EL
Sbjct: 609 ASEGLVREAQDLLSEL 624



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 96/393 (24%), Positives = 180/393 (45%), Gaps = 8/393 (2%)

Query: 107 FANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMR 166
            + L+ SLC  G   +  R  +       V    A   MI   CR+G+   A R+   + 
Sbjct: 47  LSALIRSLCAAGRTADAARALDTAGDAAGV---VAYNAMIAGYCRAGQVAAARRLAAAVP 103

Query: 167 KRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLE 226
              + P+  +Y  IV  LC  G    A  +L+E    G   +     V++E  C      
Sbjct: 104 ---VPPNAYTYFPIVRSLCARGLIADALTVLDEMPLRGCAATPPMCHVILEAACRGGGFR 160

Query: 227 KARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVI 286
            A + LQ + +K     +  CN+ + A+C      E + +L  +    C+PD+++ N V+
Sbjct: 161 SAVRALQVLHAKGCTLDSGNCNLVVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVL 220

Query: 287 NGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
            G C   R ++  +++ +MV    C P+  TF T+I  L   G  ++    L Q MP+ G
Sbjct: 221 KGLCMAKRWDDVEELMVEMVRVG-CPPNVATFNTLIAYLCRNGLFEQVHEALSQ-MPEHG 278

Query: 347 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
            +P +  Y  ++ G+ +    E A ++ + M   G+  +   Y  V+ GLC + + +EA+
Sbjct: 279 CTPDLRMYATIIDGICKDGHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAE 338

Query: 407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466
               ++       D+  +  ++   C++G +   +  L ++++ G  P+++ Y  VI+G 
Sbjct: 339 DLLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVITYTTVINGF 398

Query: 467 CKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
           CK  +  EA  +L+ M   G  P+ +++ I+ K
Sbjct: 399 CKEGLVDEAVMLLKNMSACGCKPNTISYTIVLK 431



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/278 (24%), Positives = 127/278 (45%), Gaps = 40/278 (14%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C    V    +L   M   G +P+V++YTT+I+G+C+ G +D A  +   M  CG 
Sbjct: 360 VDFFCQNGLVDRVIELLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGC 419

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN+++Y+++++G+ R      A     +L   M ++  L  N   F  L++ +C++G V
Sbjct: 420 KPNTISYTIVLKGLCRAERWVDAQ----ELISHMIQQGCLP-NPVTFNTLINFMCKKGLV 474

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTP------SL 174
            +   + + M       +  +   +ID L ++G+   A  ++ VM  +G+TP      S+
Sbjct: 475 EQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNTIIYSSM 534

Query: 175 VS-----------------------------YNSIVHGLCKHGGCMRAYQLLEEGIQFGY 205
            S                             YN+++  LCK     RA       +  G 
Sbjct: 535 ASALSREGRTDKIIQMFDSIQDATVRSDAALYNAVISSLCKRWETDRAIDFFAYMVSNGC 594

Query: 206 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           +P+E TY +L+ GL  E  + +A+ +L  + S++ V +
Sbjct: 595 MPNESTYTILIRGLASEGLVREAQDLLSELCSRRAVRK 632


>gi|222616383|gb|EEE52515.1| hypothetical protein OsJ_34721 [Oryza sativa Japonica Group]
          Length = 820

 Score =  171 bits (434), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 130/523 (24%), Positives = 238/523 (45%), Gaps = 39/523 (7%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           MD LC   R+ EA KL  +   +G  P+V  Y+ LI  YC+ G +  A   ++ M   G+
Sbjct: 301 MDGLCKEMRLDEAEKLLENKARQGSNPDVYGYSYLIRSYCKMGNLINAVDHYEAMVSHGI 360

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             N    S L++   +      A     K      ++  L ++   +   +D+ C+ G +
Sbjct: 361 ETNCHIVSYLLQCFRKLGMTSEAIAYFLKF-----KDSGLHLDKVIYNIAMDTYCKNGNM 415

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           NE  ++  +M  G    ++     +I   C  G    A +V   M K  + P +V+YN +
Sbjct: 416 NEAVKLLNEMKYGGLTPDKIHYTCLISGYCLKGEMQNAQQVFEEMLKANIEPDIVTYNIL 475

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
             G CK G  M  + LL+     G  P+  TY + + G C   +L +A +VL  ++ +K 
Sbjct: 476 ASGFCKSGLVMEVFDLLDRMADQGLEPNSLTYGIAIVGFCRGGNLSEA-EVLFNVVEEKG 534

Query: 241 VDRTRICNIYLRALC--LIKNPTELLNVLVFMLQTQCQ-PDVITLNTVINGFCKMGRIEE 297
           +D   +  +Y   +C  L+   T+   +L   +  Q    D  + + +IN  C++G ++ 
Sbjct: 535 IDHIEV--MYSSMVCGYLLSGWTDHAYMLFVRVARQGNLVDHFSCSKLINDLCRVGNVQG 592

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           A  V   M+      PD ++++ +I      G + +A +L +  M QRG S  ++ Y  +
Sbjct: 593 ASNVCKIMLEHDV-VPDVISYSKLISIYCQNGDMDKA-HLWFHDMVQRGLSVDVIVYTIL 650

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA-KRFWDDIVWP- 415
           + G  +  R++EA ++F  M  +G+  D   Y +++DG      L E  ++ W+ I    
Sbjct: 651 MNGYCKAGRLQEACQLFVQMTNLGIKPDVIAYTVLLDG-----HLKETLQQGWEGIAKER 705

Query: 416 -------------SNIHDNYV------YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNI 456
                        S++ D  +      Y  +I G C++  + EA     E++  G+TP+ 
Sbjct: 706 RSFLLRANHNKLLSSMKDMQIEPDVPCYTVLIDGKCKAEYLVEARELFDEMLQKGLTPDA 765

Query: 457 VCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
             Y  +I+G C      +A  +L+EM   G+ PD +T+ +L++
Sbjct: 766 YAYTALINGYCSQGEISKAEDLLQEMIDKGIEPDELTFSVLNQ 808



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 123/524 (23%), Positives = 224/524 (42%), Gaps = 86/524 (16%)

Query: 22  SRGHVP-NVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDV 80
           +R  VP   ++Y  ++ G C+   +D A K+ +     G  P+   YS L+R   +  ++
Sbjct: 286 NREKVPVEAMAYNMVMDGLCKEMRLDEAEKLLENKARQGSNPDVYGYSYLIRSYCKMGNL 345

Query: 81  ERA----------------NVLMFKLWERMK--------------EEEDLSVNNAAFANL 110
             A                +++ + L    K              ++  L ++   +   
Sbjct: 346 INAVDHYEAMVSHGIETNCHIVSYLLQCFRKLGMTSEAIAYFLKFKDSGLHLDKVIYNIA 405

Query: 111 VDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGL 170
           +D+ C+ G +NE  ++  +M  G    ++     +I   C  G    A +V   M K  +
Sbjct: 406 MDTYCKNGNMNEAVKLLNEMKYGGLTPDKIHYTCLISGYCLKGEMQNAQQVFEEMLKANI 465

Query: 171 TPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARK 230
            P +V+YN +  G CK G  M  + LL+     G  P+  TY + + G C   +L +A +
Sbjct: 466 EPDIVTYNILASGFCKSGLVMEVFDLLDRMADQGLEPNSLTYGIAIVGFCRGGNLSEA-E 524

Query: 231 VLQFMLSKKDVDRTRI------------------------------------CNIYLRAL 254
           VL  ++ +K +D   +                                    C+  +  L
Sbjct: 525 VLFNVVEEKGIDHIEVMYSSMVCGYLLSGWTDHAYMLFVRVARQGNLVDHFSCSKLINDL 584

Query: 255 CLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPD 314
           C + N     NV   ML+    PDVI+ + +I+ +C+ G +++A    +DMV     + D
Sbjct: 585 CRVGNVQGASNVCKIMLEHDVVPDVISYSKLISIYCQNGDMDKAHLWFHDMVQRGL-SVD 643

Query: 315 AVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR--LRRVEE--A 370
            + +T ++ G    GR+QEA  L  Q M   G  P ++ Y  +L G  +  L++  E  A
Sbjct: 644 VIVYTILMNGYCKAGRLQEACQLFVQ-MTNLGIKPDVIAYTVLLDGHLKETLQQGWEGIA 702

Query: 371 KE------------VFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
           KE            + + M  + +  D   Y ++IDG C++  L EA+  +D+++     
Sbjct: 703 KERRSFLLRANHNKLLSSMKDMQIEPDVPCYTVLIDGKCKAEYLVEARELFDEMLQKGLT 762

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVV 462
            D Y Y A+I G C  G+I +A   L E++D G+ P+ + ++V+
Sbjct: 763 PDAYAYTALINGYCSQGEISKAEDLLQEMIDKGIEPDELTFSVL 806



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 120/481 (24%), Positives = 225/481 (46%), Gaps = 17/481 (3%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           +V EA +++ +M   G  P+   Y++ + G C  G+ D+AY +  E+    V   ++ Y+
Sbjct: 239 KVDEALQVWAEMTEMGVKPDARGYSSFLIGLCDCGKYDLAYVILQEINREKVPVEAMAYN 298

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREG-YVNEVFRIA 127
           +++ G+ +   ++ A     KL E  K  +  + +   ++ L+ S C+ G  +N V    
Sbjct: 299 MVMDGLCKEMRLDEAE----KLLEN-KARQGSNPDVYGYSYLIRSYCKMGNLINAVDHYE 353

Query: 128 EDMPQGKSVNEEFACGHMIDSLCRSGRNHG--ASRVVYVMRKR--GLTPSLVSYNSIVHG 183
             +  G   N      H++  L +  R  G  +  + Y ++ +  GL    V YN  +  
Sbjct: 354 AMVSHGIETN-----CHIVSYLLQCFRKLGMTSEAIAYFLKFKDSGLHLDKVIYNIAMDT 408

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK+G    A +LL E    G  P +  Y  L+ G C + +++ A++V + ML       
Sbjct: 409 YCKNGNMNEAVKLLNEMKYGGLTPDKIHYTCLISGYCLKGEMQNAQQVFEEMLKANIEPD 468

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               NI     C      E+ ++L  M     +P+ +T    I GFC+ G + EA +VL 
Sbjct: 469 IVTYNILASGFCKSGLVMEVFDLLDRMADQGLEPNSLTYGIAIVGFCRGGNLSEA-EVLF 527

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           ++V  K      V +++++ G L  G    A  L  +V  Q G      + + ++  L R
Sbjct: 528 NVVEEKGIDHIEVMYSSMVCGYLLSGWTDHAYMLFVRVARQ-GNLVDHFSCSKLINDLCR 586

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
           +  V+ A  V   ML   VV D  +Y+ +I   C++  +D+A  ++ D+V      D  V
Sbjct: 587 VGNVQGASNVCKIMLEHDVVPDVISYSKLISIYCQNGDMDKAHLWFHDMVQRGLSVDVIV 646

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y  ++ G C++G++ EA     ++ + G+ P+++ Y V++DG  K ++++    I +E R
Sbjct: 647 YTILMNGYCKAGRLQEACQLFVQMTNLGIKPDVIAYTVLLDGHLKETLQQGWEGIAKERR 706

Query: 484 K 484
            
Sbjct: 707 S 707



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 112/486 (23%), Positives = 220/486 (45%), Gaps = 15/486 (3%)

Query: 16  LFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVL 75
           LF  +   G VP+V ++  L+     TGE ++    ++EM+   + P+  T++++ R + 
Sbjct: 176 LFSGICRLGVVPSVWTWNLLLKFIAETGEYEMVLAAYNEMKCFQLTPDVYTFAIVTRSLF 235

Query: 76  RTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKS 135
           + + V+ A     ++W  M E   +  +   +++ +  LC  G  +  + I +++ + K 
Sbjct: 236 QAKKVDEA----LQVWAEMTEM-GVKPDARGYSSFLIGLCDCGKYDLAYVILQEINREKV 290

Query: 136 VNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQ 195
             E  A   ++D LC+  R   A +++    ++G  P +  Y+ ++   CK G  + A  
Sbjct: 291 PVEAMAYNMVMDGLCKEMRLDEAEKLLENKARQGSNPDVYGYSYLIRSYCKMGNLINAVD 350

Query: 196 LLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD----VDRTRICNIYL 251
             E  +  G   + H    L++       L    + + + L  KD    +D+  I NI +
Sbjct: 351 HYEAMVSHGIETNCHIVSYLLQCF---RKLGMTSEAIAYFLKFKDSGLHLDKV-IYNIAM 406

Query: 252 RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC 311
              C   N  E + +L  M      PD I    +I+G+C  G ++ A +V  +M+     
Sbjct: 407 DTYCKNGNMNEAVKLLNEMKYGGLTPDKIHYTCLISGYCLKGEMQNAQQVFEEMLKANI- 465

Query: 312 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK 371
            PD VT+  +  G    G + E  +LL + M  +G  P  +TY   + G  R   + EA+
Sbjct: 466 EPDIVTYNILASGFCKSGLVMEVFDLLDR-MADQGLEPNSLTYGIAIVGFCRGGNLSEAE 524

Query: 372 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 431
            +FN +   G+      Y+ ++ G   S   D A   +  +    N+ D++  + +I  L
Sbjct: 525 VLFNVVEEKGIDHIEVMYSSMVCGYLLSGWTDHAYMLFVRVARQGNLVDHFSCSKLINDL 584

Query: 432 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 491
           CR G +  A +    +++  V P+++ Y+ +I   C+     +A+    +M + GL+ D 
Sbjct: 585 CRVGNVQGASNVCKIMLEHDVVPDVISYSKLISIYCQNGDMDKAHLWFHDMVQRGLSVDV 644

Query: 492 VTWRIL 497
           + + IL
Sbjct: 645 IVYTIL 650



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 115/423 (27%), Positives = 194/423 (45%), Gaps = 66/423 (15%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           MD  C    + EA KL  +MK  G  P+ + YT LI GYC  GEM  A +VF+EM    +
Sbjct: 406 MDTYCKNGNMNEAVKLLNEMKYGGLTPDKIHYTCLISGYCLKGEMQNAQQVFEEMLKANI 465

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TY++L  G  ++  V      +F L +RM  ++ L  N+  +   +   CR G +
Sbjct: 466 EPDIVTYNILASGFCKSGLVME----VFDLLDRMA-DQGLEPNSLTYGIAIVGFCRGGNL 520

Query: 121 NE---VFRIAED---------------------------------MPQGKSVNEEFACGH 144
           +E   +F + E+                                   QG  V + F+C  
Sbjct: 521 SEAEVLFNVVEEKGIDHIEVMYSSMVCGYLLSGWTDHAYMLFVRVARQGNLV-DHFSCSK 579

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
           +I+ LCR G   GAS V  +M +  + P ++SY+ ++   C++G   +A+    + +Q G
Sbjct: 580 LINDLCRVGNVQGASNVCKIMLEHDVVPDVISYSKLISIYCQNGDMDKAHLWFHDMVQRG 639

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS---KKDV-DRTRICNIYL--------- 251
                  Y +L+ G C    L++A ++   M +   K DV   T + + +L         
Sbjct: 640 LSVDVIVYTILMNGYCKAGRLQEACQLFVQMTNLGIKPDVIAYTVLLDGHLKETLQQGWE 699

Query: 252 ------RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM 305
                 R+  L  N  +LL+    M   Q +PDV     +I+G CK   + EA ++ ++M
Sbjct: 700 GIAKERRSFLLRANHNKLLSS---MKDMQIEPDVPCYTVLIDGKCKAEYLVEARELFDEM 756

Query: 306 VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLR 365
           +  K   PDA  +T +I G  + G I +A +LL Q M  +G  P  +T++ + +   R R
Sbjct: 757 LQ-KGLTPDAYAYTALINGYCSQGEISKAEDLL-QEMIDKGIEPDELTFSVLNQSSLRSR 814

Query: 366 RVE 368
           +++
Sbjct: 815 KIQ 817



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 121/292 (41%), Gaps = 43/292 (14%)

Query: 247 CNIYLRALCLIKNPTELLNV--LVFMLQTQCQ----PDVITLNTVINGFCKMGRIEEALK 300
           C++     CLIK      +V   + +    C+    P V T N ++    + G  E  L 
Sbjct: 151 CSLSFMVDCLIKACITCYDVQATICLFSGICRLGVVPSVWTWNLLLKFIAETGEYEMVLA 210

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
             N+M   +   PD  TF  +   L    ++ EAL + +  M + G  P    Y++ L G
Sbjct: 211 AYNEMKCFQL-TPDVYTFAIVTRSLFQAKKVDEALQV-WAEMTEMGVKPDARGYSSFLIG 268

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L    + + A  +   +    V  ++  Y +V+DGLC+  +LDEA++  ++     +  D
Sbjct: 269 LCDCGKYDLAYVILQEINREKVPVEAMAYNMVMDGLCKEMRLDEAEKLLENKARQGSNPD 328

Query: 421 NYVYAAMIKGLCRSGKI-----------------------------------HEAVHFLY 445
            Y Y+ +I+  C+ G +                                    EA+ +  
Sbjct: 329 VYGYSYLIRSYCKMGNLINAVDHYEAMVSHGIETNCHIVSYLLQCFRKLGMTSEAIAYFL 388

Query: 446 ELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           +  DSG+  + V YN+ +D  CK     EA ++L EM+  GL PD + +  L
Sbjct: 389 KFKDSGLHLDKVIYNIAMDTYCKNGNMNEAVKLLNEMKYGGLTPDKIHYTCL 440



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 80/174 (45%)

Query: 333 EALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIV 392
           +A   L+  + + G  P + T+N +L+ +      E     +N M    +  D  T+AIV
Sbjct: 171 QATICLFSGICRLGVVPSVWTWNLLLKFIAETGEYEMVLAAYNEMKCFQLTPDVYTFAIV 230

Query: 393 IDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGV 452
              L ++ ++DEA + W ++       D   Y++ + GLC  GK   A   L E+    V
Sbjct: 231 TRSLFQAKKVDEALQVWAEMTEMGVKPDARGYSSFLIGLCDCGKYDLAYVILQEINREKV 290

Query: 453 TPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
               + YN+V+DG CK     EA ++L    + G NPD   +  L + +   GN
Sbjct: 291 PVEAMAYNMVMDGLCKEMRLDEAEKLLENKARQGSNPDVYGYSYLIRSYCKMGN 344


>gi|255570073|ref|XP_002525999.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534731|gb|EEF36423.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 557

 Score =  171 bits (434), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 123/443 (27%), Positives = 214/443 (48%), Gaps = 21/443 (4%)

Query: 59  GVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREG 118
           G LP+ +TY+ L+ G  +   VE A + +    +R++  E   V+  +F  L +  C+  
Sbjct: 2   GSLPDIVTYNSLIDGYCKYGQVEEACLTI----KRIRNAE-CRVDLVSFNALFNGFCKRK 56

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
              EVF I   +     +      G  ID+LC+ G      +    MRK G+ P+L+++ 
Sbjct: 57  MKEEVF-IYMGLMWKCCLPNVITYGTWIDTLCKVGDLDTGYKFFKEMRKDGIVPNLIAFT 115

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKAR----KVLQF 234
            ++ G  K G    AYQL ++  +  +LP+ +TY  L+ G C    LE+A     K+L+ 
Sbjct: 116 CLIDGYSKIGNLDFAYQLYKDMCKSMHLPNVYTYAALINGFCKRGMLERAEWFFLKMLEV 175

Query: 235 MLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGR 294
            +       T I + + +      N    +     M +   + D++    VI+G    GR
Sbjct: 176 GIMPNSTVYTSIIDGHFKK----GNIDVAMKYFSEMRKESFRLDIVAYGVVISGLVNNGR 231

Query: 295 IEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTY 354
           +++ L+V+ DMV     APD V  TT++      G  + A  + Y+ +  RG+ P  VT 
Sbjct: 232 LDKVLEVMEDMVRNGL-APDKVVLTTLMHAHFKAGNTKAAYGV-YRELLNRGFEPDAVTI 289

Query: 355 NAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVW 414
           ++++ GL +  R  +AK  F         A+  +Y  +IDG+C+   LDE +R   ++  
Sbjct: 290 SSLIDGLCKDGRYHDAKGYF-----CKEKANEVSYTALIDGICKEGNLDEVERVVMEMSE 344

Query: 415 PSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKRE 474
              + D +VY + I  LCR GKI EA     ++V+ G+  +++ Y+ +I G     +  E
Sbjct: 345 SGFVPDKFVYTSWIAELCRQGKIVEAFKVKNKMVEEGIDLDLLTYSSLIFGLANKGLMIE 404

Query: 475 AYQILREMRKNGLNPDAVTWRIL 497
           A Q+  +M K G+ PD++ + IL
Sbjct: 405 AKQLFDDMLKRGIIPDSMVFDIL 427



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 98/363 (26%), Positives = 174/363 (47%), Gaps = 12/363 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC +  +   +K F +M+  G VPN++++T LI GY + G +D AY+++ +M     
Sbjct: 83  IDTLCKVGDLDTGYKFFKEMRKDGIVPNLIAFTCLIDGYSKIGNLDFAYQLYKDMCKSMH 142

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           LPN  TY+ L+ G  +   +ERA     K+ E       +  N+  + +++D   ++G +
Sbjct: 143 LPNVYTYAALINGFCKRGMLERAEWFFLKMLEV-----GIMPNSTVYTSIIDGHFKKGNI 197

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +   +   +M +     +  A G +I  L  +GR      V+  M + GL P  V   ++
Sbjct: 198 DVAMKYFSEMRKESFRLDIVAYGVVISGLVNNGRLDKVLEVMEDMVRNGLAPDKVVLTTL 257

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +H   K G    AY +  E +  G+ P   T   L++GLC +     A+        K+ 
Sbjct: 258 MHAHFKAGNTKAAYGVYRELLNRGFEPDAVTISSLIDGLCKDGRYHDAKG----YFCKEK 313

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
            +      + +  +C   N  E+  V++ M ++   PD     + I   C+ G+I EA K
Sbjct: 314 ANEVSYTAL-IDGICKEGNLDEVERVVMEMSESGFVPDKFVYTSWIAELCRQGKIVEAFK 372

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           V N MV       D +T++++IFGL N G + EA   L+  M +RG  P  + ++ ++RG
Sbjct: 373 VKNKMVEEGI-DLDLLTYSSLIFGLANKGLMIEA-KQLFDDMLKRGIIPDSMVFDILIRG 430

Query: 361 LFR 363
             +
Sbjct: 431 YLK 433



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 103/429 (24%), Positives = 182/429 (42%), Gaps = 51/429 (11%)

Query: 26  VPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANV 85
           +PNV++Y T I   C+ G++D  YK F EMR  G++PN +                    
Sbjct: 73  LPNVITYGTWIDTLCKVGDLDTGYKFFKEMRKDGIVPNLI-------------------- 112

Query: 86  LMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHM 145
                               AF  L+D   + G ++  +++ +DM +   +   +    +
Sbjct: 113 --------------------AFTCLIDGYSKIGNLDFAYQLYKDMCKSMHLPNVYTYAAL 152

Query: 146 IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY 205
           I+  C+ G    A      M + G+ P+   Y SI+ G  K G    A +   E  +  +
Sbjct: 153 INGFCKRGMLERAEWFFLKMLEVGIMPNSTVYTSIIDGHFKKGNIDVAMKYFSEMRKESF 212

Query: 206 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 265
                 Y V++ GL     L+K  +V++ M+         +    + A     N      
Sbjct: 213 RLDIVAYGVVISGLVNNGRLDKVLEVMEDMVRNGLAPDKVVLTTLMHAHFKAGNTKAAYG 272

Query: 266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA--VTFTTIIF 323
           V   +L    +PD +T++++I+G CK GR  +A         G FC   A  V++T +I 
Sbjct: 273 VYRELLNRGFEPDAVTISSLIDGLCKDGRYHDA--------KGYFCKEKANEVSYTALID 324

Query: 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 383
           G+   G + E   ++ + M + G+ P    Y + +  L R  ++ EA +V N M+  G+ 
Sbjct: 325 GICKEGNLDEVERVVME-MSESGFVPDKFVYTSWIAELCRQGKIVEAFKVKNKMVEEGID 383

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
            D  TY+ +I GL     + EAK+ +DD++    I D+ V+  +I+G  +        H 
Sbjct: 384 LDLLTYSSLIFGLANKGLMIEAKQLFDDMLKRGIIPDSMVFDILIRGYLKQDNPVAISHL 443

Query: 444 LYELVDSGV 452
             E+   G+
Sbjct: 444 HEEMRRRGL 452



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 113/235 (48%), Gaps = 3/235 (1%)

Query: 272 QTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRI 331
             +C+ D+++ N + NGFCK    EE    +  M   K C P+ +T+ T I  L  VG +
Sbjct: 35  NAECRVDLVSFNALFNGFCKRKMKEEVFIYMGLM--WKCCLPNVITYGTWIDTLCKVGDL 92

Query: 332 QEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAI 391
                  ++ M + G  P ++ +  ++ G  ++  ++ A +++  M     + +  TYA 
Sbjct: 93  DTGYKF-FKEMRKDGIVPNLIAFTCLIDGYSKIGNLDFAYQLYKDMCKSMHLPNVYTYAA 151

Query: 392 VIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 451
           +I+G C+   L+ A+ F+  ++    + ++ VY ++I G  + G I  A+ +  E+    
Sbjct: 152 LINGFCKRGMLERAEWFFLKMLEVGIMPNSTVYTSIIDGHFKKGNIDVAMKYFSEMRKES 211

Query: 452 VTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
              +IV Y VVI G        +  +++ +M +NGL PD V    L   H   GN
Sbjct: 212 FRLDIVAYGVVISGLVNNGRLDKVLEVMEDMVRNGLAPDKVVLTTLMHAHFKAGN 266



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 60/258 (23%), Positives = 118/258 (45%), Gaps = 24/258 (9%)

Query: 13  AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVR 72
           A K F +M+      ++V+Y  +I G    G +D   +V ++M   G+ P+ +  + L+ 
Sbjct: 200 AMKYFSEMRKESFRLDIVAYGVVISGLVNNGRLDKVLEVMEDMVRNGLAPDKVVLTTLMH 259

Query: 73  GVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQ 132
              +  + + A  +  +L  R  E + +++     ++L+D LC++G  ++         +
Sbjct: 260 AHFKAGNTKAAYGVYRELLNRGFEPDAVTI-----SSLIDGLCKDGRYHDA--------K 306

Query: 133 G---KSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG 189
           G   K    E +   +ID +C+ G      RVV  M + G  P    Y S +  LC+ G 
Sbjct: 307 GYFCKEKANEVSYTALIDGICKEGNLDEVERVVMEMSESGFVPDKFVYTSWIAELCRQGK 366

Query: 190 CMRAY----QLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTR 245
            + A+    +++EEGI    L    TY  L+ GL  +  + +A+++   ML +  +  + 
Sbjct: 367 IVEAFKVKNKMVEEGIDLDLL----TYSSLIFGLANKGLMIEAKQLFDDMLKRGIIPDSM 422

Query: 246 ICNIYLRALCLIKNPTEL 263
           + +I +R      NP  +
Sbjct: 423 VFDILIRGYLKQDNPVAI 440



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 63/134 (47%), Gaps = 2/134 (1%)

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
           +G + D  TY  +IDG C+  Q++EA      I       D   + A+  G C+  K+ E
Sbjct: 1   MGSLPDIVTYNSLIDGYCKYGQVEEACLTIKRIRNAECRVDLVSFNALFNGFCKR-KMKE 59

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
            V     L+     PN++ Y   ID  CK+      Y+  +EMRK+G+ P+ + +  L  
Sbjct: 60  EVFIYMGLMWKCCLPNVITYGTWIDTLCKVGDLDTGYKFFKEMRKDGIVPNLIAFTCLID 119

Query: 500 LHGNRGN-DFGLRI 512
            +   GN DF  ++
Sbjct: 120 GYSKIGNLDFAYQL 133


>gi|168038876|ref|XP_001771925.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162676707|gb|EDQ63186.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 831

 Score =  171 bits (434), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 122/481 (25%), Positives = 218/481 (45%), Gaps = 45/481 (9%)

Query: 13  AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVR 72
           A   F  M++ G  PNV SYT LIH Y    ++  A    +EM   GV PN+ TYSV++ 
Sbjct: 211 ARAAFESMRAAGIEPNVHSYTNLIHAYAVAQDLRGAIACVEEMEAEGVSPNAATYSVIIS 270

Query: 73  GVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQ 132
           G  R  DVE A     + W +    E+   N+  + N+                      
Sbjct: 271 GYGRLGDVEAA-----ERWFQRALSENWHHNDVIYNNI---------------------- 303

Query: 133 GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL--CKH-GG 189
                        I + C++G    A  ++  M ++GL  +L  YN ++ G   C+    
Sbjct: 304 -------------IHAYCKAGNMERAEAIMTAMEEQGLEATLGLYNMLMDGYVHCRAVDK 350

Query: 190 CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNI 249
           C+  ++ L+   + G  P+  +Y  L+        ++KA ++   M  +      +  ++
Sbjct: 351 CLNVFRRLKARTETGLSPTVVSYGCLINLYSKLGKMDKALQISNEMEDQGIKHNRKTYSM 410

Query: 250 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK 309
            +     + +     +V   M     +PD IT N ++N FCK G++  AL++L  M +G 
Sbjct: 411 IIDGYVQLGDTANAFSVFEDMSNAGIKPDGITYNILMNAFCKNGQMNRALELLARMESGD 470

Query: 310 FCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEE 369
            C P   T+T II G + +G ++ A   + + M   G+ P   TYN ++ GL +  +++ 
Sbjct: 471 -CPPTLRTYTIIIDGFMKIGDLRMAFETV-RDMKMAGFRPSAATYNVIMHGLAQAGQMDR 528

Query: 370 AKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIK 429
           A  + + M+  GV  +  +Y  +I+G      +  A ++++ I       D   YA+++K
Sbjct: 529 AASIIDEMVVAGVHPNERSYTTLIEGYACIGDMGLAFKYFNRIKEVGLKPDVIAYASLLK 588

Query: 430 GLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNP 489
             C++G++   +    E+  +GV  N   YN+++DG  +     EA  I+++MR  GL P
Sbjct: 589 ACCKAGRMQSTLAITAEMAAAGVPMNNYIYNILLDGWAQRGDMWEASDIMQKMRHEGLTP 648

Query: 490 D 490
           D
Sbjct: 649 D 649



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 105/490 (21%), Positives = 205/490 (41%), Gaps = 42/490 (8%)

Query: 4   LCGLSRVGE---AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           + G  R+G+   A + F    S     N V Y  +IH YC+ G M+ A  +   M   G+
Sbjct: 269 ISGYGRLGDVEAAERWFQRALSENWHHNDVIYNNIIHAYCKAGNMERAEAIMTAMEEQGL 328

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
                 Y++L+ G +  R V++   +  +L  + + E  LS    ++  L++   + G +
Sbjct: 329 EATLGLYNMLMDGYVHCRAVDKCLNVFRRL--KARTETGLSPTVVSYGCLINLYSKLGKM 386

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           ++  +I+ +M      +       +ID   + G    A  V   M   G+ P  ++YN +
Sbjct: 387 DKALQISNEMEDQGIKHNRKTYSMIIDGYVQLGDTANAFSVFEDMSNAGIKPDGITYNIL 446

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++  CK+G   RA +LL         P+  TY ++++G     DL  A + ++       
Sbjct: 447 MNAFCKNGQMNRALELLARMESGDCPPTLRTYTIIIDGFMKIGDLRMAFETVR------- 499

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                        M     +P   T N +++G  + G+++ A  
Sbjct: 500 ----------------------------DMKMAGFRPSAATYNVIMHGLAQAGQMDRAAS 531

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           ++++MV      P+  ++TT+I G   +G +  A     ++  + G  P ++ Y ++L+ 
Sbjct: 532 IIDEMVVAG-VHPNERSYTTLIEGYACIGDMGLAFKYFNRI-KEVGLKPDVIAYASLLKA 589

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
             +  R++    +   M   GV  ++  Y I++DG  +   + EA      +       D
Sbjct: 590 CCKAGRMQSTLAITAEMAAAGVPMNNYIYNILLDGWAQRGDMWEASDIMQKMRHEGLTPD 649

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
            + Y + I   C++G + +A   + ++   GV PN+  Y  +I G    S   +A     
Sbjct: 650 IHSYTSFINACCKAGDMLKATETIEQMKQQGVQPNLQAYTTLIHGWASASYPEKALICYD 709

Query: 481 EMRKNGLNPD 490
           EM+  G+ PD
Sbjct: 710 EMKSAGMIPD 719



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 108/492 (21%), Positives = 203/492 (41%), Gaps = 47/492 (9%)

Query: 19  DMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTR 78
           D   R   P    +T L++ Y + G+   A   F+ MR  G+ PN  +Y+ L+      +
Sbjct: 182 DAFKRIKKPKQRDHTLLVNYYGKRGDKHSARAAFESMRAAGIEPNVHSYTNLIHAYAVAQ 241

Query: 79  DVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNE 138
           D+  A   + ++     E E +S N A ++ ++    R G V    R  +        + 
Sbjct: 242 DLRGAIACVEEM-----EAEGVSPNAATYSVIISGYGRLGDVEAAERWFQRALSENWHHN 296

Query: 139 EFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL--CKH-GGCMRAYQ 195
           +    ++I + C++G    A  ++  M ++GL  +L  YN ++ G   C+    C+  ++
Sbjct: 297 DVIYNNIIHAYCKAGNMERAEAIMTAMEEQGLEATLGLYNMLMDGYVHCRAVDKCLNVFR 356

Query: 196 LLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALC 255
            L+   + G  P+  +Y  L+      S L K  K LQ                      
Sbjct: 357 RLKARTETGLSPTVVSYGCLINLY---SKLGKMDKALQ---------------------- 391

Query: 256 LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA 315
            I N  E   +         + +  T + +I+G+ ++G    A  V  DM +     PD 
Sbjct: 392 -ISNEMEDQGI---------KHNRKTYSMIIDGYVQLGDTANAFSVFEDM-SNAGIKPDG 440

Query: 316 VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN 375
           +T+  ++      G++  AL LL + M      P + TY  ++ G  ++  +  A E   
Sbjct: 441 ITYNILMNAFCKNGQMNRALELLAR-MESGDCPPTLRTYTIIIDGFMKIGDLRMAFETVR 499

Query: 376 CMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN-YVYAAMIKGLCRS 434
            M   G    + TY +++ GL ++ Q+D A    D++V  + +H N   Y  +I+G    
Sbjct: 500 DMKMAGFRPSAATYNVIMHGLAQAGQMDRAASIIDEMV-VAGVHPNERSYTTLIEGYACI 558

Query: 435 GKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
           G +  A  +   + + G+ P+++ Y  ++   CK    +    I  EM   G+  +   +
Sbjct: 559 GDMGLAFKYFNRIKEVGLKPDVIAYASLLKACCKAGRMQSTLAITAEMAAAGVPMNNYIY 618

Query: 495 RILDKLHGNRGN 506
            IL      RG+
Sbjct: 619 NILLDGWAQRGD 630



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 64/259 (24%), Positives = 116/259 (44%), Gaps = 32/259 (12%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M+  C   ++  A +L   M+S    P + +YT +I G+ + G++ +A++   +M+  G 
Sbjct: 447 MNAFCKNGQMNRALELLARMESGDCPPTLRTYTIIIDGFMKIGDLRMAFETVRDMKMAGF 506

Query: 61  LPNSLTYSVLVRGVLRTRDVERANV-------------------------------LMFK 89
            P++ TY+V++ G+ +   ++RA                                 L FK
Sbjct: 507 RPSAATYNVIMHGLAQAGQMDRAASIIDEMVVAGVHPNERSYTTLIEGYACIGDMGLAFK 566

Query: 90  LWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSL 149
            + R+K E  L  +  A+A+L+ + C+ G +     I  +M         +    ++D  
Sbjct: 567 YFNRIK-EVGLKPDVIAYASLLKACCKAGRMQSTLAITAEMAAAGVPMNNYIYNILLDGW 625

Query: 150 CRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSE 209
            + G    AS ++  MR  GLTP + SY S ++  CK G  ++A + +E+  Q G  P+ 
Sbjct: 626 AQRGDMWEASDIMQKMRHEGLTPDIHSYTSFINACCKAGDMLKATETIEQMKQQGVQPNL 685

Query: 210 HTYKVLVEGLCGESDLEKA 228
             Y  L+ G    S  EKA
Sbjct: 686 QAYTTLIHGWASASYPEKA 704


>gi|242074832|ref|XP_002447352.1| hypothetical protein SORBIDRAFT_06g033480 [Sorghum bicolor]
 gi|241938535|gb|EES11680.1| hypothetical protein SORBIDRAFT_06g033480 [Sorghum bicolor]
          Length = 888

 Score =  171 bits (434), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 119/488 (24%), Positives = 227/488 (46%), Gaps = 9/488 (1%)

Query: 13  AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVR 72
           A   F +M++RG  PN   +T+L+H Y    +M  A    +EM+  G+    +TYS+L+ 
Sbjct: 272 ARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGALSCVEEMKSEGLEMTVVTYSILIA 331

Query: 73  GVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQ 132
           G  +T D E A+    KL++  K + D ++N   ++N++ + C+ G ++    +  +M +
Sbjct: 332 GYGKTNDAESAD----KLFKEAKTKLD-NLNGIIYSNIIHAHCQSGNMDRAEELVREMEE 386

Query: 133 GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKR-GLTPSLVSYNSIVHGLCKHGGCM 191
              ++      H +       ++     +V+   K  G  PS++SY  +++   K G   
Sbjct: 387 -DGIDAPIDVYHSMMHGYTVAQDEKKCLIVFERLKECGFRPSIISYGCLINLYVKIGKVP 445

Query: 192 RAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYL 251
           +A  + +E    G   +  TY +L+ G     D   A  + + M+         I N+ +
Sbjct: 446 KALAVSKEMESHGIKHNNKTYSMLINGFIHLHDFANAFSIFEDMIKSGLQPDRAIYNLLV 505

Query: 252 RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC 311
            A C + N    + +   M + + QP   T   +I GF   G ++ AL  L D++    C
Sbjct: 506 EAFCKMGNMDRAIRIFERMKKERMQPSNRTFRPIIEGFAVAGDMKRALDTL-DLMRRSGC 564

Query: 312 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK 371
           AP  +T+  +I GL+   +++ A+++L + M   G +P   TY  ++RG      + +A 
Sbjct: 565 APTVMTYNALIHGLIRKHQVERAVSVLDK-MSIAGIAPNEHTYTIIMRGYAASGDIGKAF 623

Query: 372 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 431
           E F  +   G+  D   Y  ++   C+S ++  A     ++ +     + ++Y  +I G 
Sbjct: 624 EYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGW 683

Query: 432 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 491
            R G + EA   + ++ + G+ PNI  +   I+  CK    + A  +++EM   GL P+ 
Sbjct: 684 ARRGDVWEAADLMKQMKEDGIPPNIHTFTSYINACCKAGDMQRAENVIQEMADVGLKPNV 743

Query: 492 VTWRILDK 499
            T+  L K
Sbjct: 744 KTFTTLIK 751



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 111/471 (23%), Positives = 214/471 (45%), Gaps = 13/471 (2%)

Query: 27  PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVL 86
           P+   +  ++  Y + G+   A   F+ MR  G+ PN+  ++ LV      RD+  A   
Sbjct: 251 PSRREFGLMVVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGA--- 307

Query: 87  MFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMI 146
                E MK  E L +    ++ L+    +        ++ ++              ++I
Sbjct: 308 -LSCVEEMK-SEGLEMTVVTYSILIAGYGKTNDAESADKLFKEAKTKLDNLNGIIYSNII 365

Query: 147 DSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLC---KHGGCMRAYQLLEEGIQF 203
            + C+SG    A  +V  M + G+   +  Y+S++HG         C+  ++ L+E    
Sbjct: 366 HAHCQSGNMDRAEELVREMEEDGIDAPIDVYHSMMHGYTVAQDEKKCLIVFERLKE---C 422

Query: 204 GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTEL 263
           G+ PS  +Y  L+        + KA  V + M S       +  ++ +     + +    
Sbjct: 423 GFRPSIISYGCLINLYVKIGKVPKALAVSKEMESHGIKHNNKTYSMLINGFIHLHDFANA 482

Query: 264 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF 323
            ++   M+++  QPD    N ++  FCKMG ++ A+++   M   +   P   TF  II 
Sbjct: 483 FSIFEDMIKSGLQPDRAIYNLLVEAFCKMGNMDRAIRIFERMKKERM-QPSNRTFRPIIE 541

Query: 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 383
           G    G ++ AL+ L  +M + G +P ++TYNA++ GL R  +VE A  V + M   G+ 
Sbjct: 542 GFAVAGDMKRALDTL-DLMRRSGCAPTVMTYNALIHGLIRKHQVERAVSVLDKMSIAGIA 600

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
            +  TY I++ G   S  + +A  ++  I       D Y+Y  +++  C+SG++  A+  
Sbjct: 601 PNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAV 660

Query: 444 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
             E+    +  N   YN++IDG  +     EA  ++++M+++G+ P+  T+
Sbjct: 661 TREMSFQKIPRNTFIYNILIDGWARRGDVWEAADLMKQMKEDGIPPNIHTF 711



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 99/430 (23%), Positives = 178/430 (41%), Gaps = 48/430 (11%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP-- 62
           C    +  A +L  +M+  G    +  Y +++HGY    +      VF+ ++ CG  P  
Sbjct: 369 CQSGNMDRAEELVREMEEDGIDAPIDVYHSMMHGYTVAQDEKKCLIVFERLKECGFRPSI 428

Query: 63  ---------------------------------NSLTYSVLVRGVLRTRDVERANVLMFK 89
                                            N+ TYS+L+ G +   D   A    F 
Sbjct: 429 ISYGCLINLYVKIGKVPKALAVSKEMESHGIKHNNKTYSMLINGFIHLHDFANA----FS 484

Query: 90  LWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSL 149
           ++E M  +  L  + A +  LV++ C+ G ++   RI E M + +          +I+  
Sbjct: 485 IFEDMI-KSGLQPDRAIYNLLVEAFCKMGNMDRAIRIFERMKKERMQPSNRTFRPIIEGF 543

Query: 150 CRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSE 209
             +G    A   + +MR+ G  P++++YN+++HGL +     RA  +L++    G  P+E
Sbjct: 544 AVAGDMKRALDTLDLMRRSGCAPTVMTYNALIHGLIRKHQVERAVSVLDKMSIAGIAPNE 603

Query: 210 HTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIY---LRALCLIKNPTELLNV 266
           HTY +++ G     D+ KA    ++    K+        IY   LRA C        L V
Sbjct: 604 HTYTIIMRGYAASGDIGKA---FEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAV 660

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
              M   +   +    N +I+G+ + G + EA  ++  M       P+  TFT+ I    
Sbjct: 661 TREMSFQKIPRNTFIYNILIDGWARRGDVWEAADLMKQMKEDGI-PPNIHTFTSYINACC 719

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
             G +Q A N++ Q M   G  P + T+  +++G  ++   + A + F  M   G+  D 
Sbjct: 720 KAGDMQRAENVI-QEMADVGLKPNVKTFTTLIKGWAKVSLPDRALKCFEEMKSAGLKPDE 778

Query: 387 TTYAIVIDGL 396
             Y  ++  L
Sbjct: 779 AAYHCLVTSL 788



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 69/334 (20%), Positives = 137/334 (41%), Gaps = 41/334 (12%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C +  +  A ++F  MK     P+  ++  +I G+   G+M  A    D MR  G 
Sbjct: 505 VEAFCKMGNMDRAIRIFERMKKERMQPSNRTFRPIIEGFAVAGDMKRALDTLDLMRRSGC 564

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P  +TY+ L+ G++R   VERA  ++ K+         ++ N   +  ++      G +
Sbjct: 565 APTVMTYNALIHGLIRKHQVERAVSVLDKM-----SIAGIAPNEHTYTIIMRGYAASGDI 619

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            + F     + +     + +    ++ + C+SGR   A  V   M  + +  +   YN +
Sbjct: 620 GKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNIL 679

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G  + G    A  L+++  + G  P+ HT+   +   C   D+++A  V+Q       
Sbjct: 680 IDGWARRGDVWEAADLMKQMKEDGIPPNIHTFTSYINACCKAGDMQRAENVIQ------- 732

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                E+ +V +       +P+V T  T+I G+ K+   + ALK
Sbjct: 733 ---------------------EMADVGL-------KPNVKTFTTLIKGWAKVSLPDRALK 764

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEA 334
              +M +     PD   +  ++  LL+   + E 
Sbjct: 765 CFEEMKSAGL-KPDEAAYHCLVTSLLSRATVMEG 797



 Score = 47.0 bits (110), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 30/163 (18%), Positives = 71/163 (43%)

Query: 339 YQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE 398
           ++ M  RG  P    + +++      R +  A      M   G+     TY+I+I G  +
Sbjct: 276 FENMRARGIEPNAFVFTSLVHAYAVARDMRGALSCVEEMKSEGLEMTVVTYSILIAGYGK 335

Query: 399 SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVC 458
           +N  + A + + +     +  +  +Y+ +I   C+SG +  A   + E+ + G+   I  
Sbjct: 336 TNDAESADKLFKEAKTKLDNLNGIIYSNIIHAHCQSGNMDRAEELVREMEEDGIDAPIDV 395

Query: 459 YNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLH 501
           Y+ ++ G      +++   +   +++ G  P  +++  L  L+
Sbjct: 396 YHSMMHGYTVAQDEKKCLIVFERLKECGFRPSIISYGCLINLY 438


>gi|297800058|ref|XP_002867913.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297313749|gb|EFH44172.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 724

 Score =  171 bits (433), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 115/479 (24%), Positives = 220/479 (45%), Gaps = 8/479 (1%)

Query: 7   LSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLT 66
           + R+ EA  +  DM+++G  P+ ++   ++     +G +D A  VFDEM   GV P+S +
Sbjct: 183 IGRLNEAVGMVMDMQNQGLSPSSITMNCVLEIAIESGLIDYAENVFDEMSVRGVCPDSSS 242

Query: 67  YSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRI 126
           + ++V G  R   ++ A+  +  + +R         +NA    ++ +LC  G VN     
Sbjct: 243 FKLMVIGCFRDGKIQEADRWLSGMIQR-----GFIPDNATCTLILSALCENGLVNRAIWY 297

Query: 127 AEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK 186
              M              +ID LC+ G    A  ++  M + G  P++ ++ +++ GLCK
Sbjct: 298 FRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCK 357

Query: 187 HGGCMRAYQLLEEGIQFG-YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTR 245
            G   +A++L  + ++   Y P+ HTY  ++ G C E  L +A  +   M  +       
Sbjct: 358 RGWTEKAFRLFLKLVRSDIYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVN 417

Query: 246 ICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM 305
                +   C   N      ++  M     +P++ T N VI+  CK  R  EA ++LN  
Sbjct: 418 TYTTLINGHCKAGNFDRAYELMNLMDDEGFRPNIYTYNAVIDSLCKKSRAPEAYELLNKA 477

Query: 306 VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLR 365
            +    A D VT+T +I        I++AL    + M + G+   +   N ++    R +
Sbjct: 478 FSCGLEA-DGVTYTILIQEQCKQSDIKQALAFFCR-MNKTGFEADMRLNNILIAAFCRQK 535

Query: 366 RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYA 425
           +++E++ +F  ++ +G+V    TY  +I G C+    D A +++ ++     + D++ Y 
Sbjct: 536 KMKESERLFQLVVSLGLVPTKETYTSMISGYCKEGDFDLALKYFHNMKRHGCVPDSFTYG 595

Query: 426 AMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484
           ++I GLC+   + EA      ++D G++P  V    +    CK +    A  +L  + K
Sbjct: 596 SLISGLCKKSMVDEACKLYEAMIDRGLSPPEVTRVTLAYEYCKRNDSASAMIVLEPLDK 654



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 116/457 (25%), Positives = 200/457 (43%), Gaps = 20/457 (4%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +  LC    V  A   F  M   G  PN++++T+LI G C+ G +  A+++ +EM   G 
Sbjct: 282 LSALCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGW 341

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN  T++ L+ G+ +    E+A    F+L+ ++   +    N   + +++   C+E  +
Sbjct: 342 KPNVYTHTALIDGLCKRGWTEKA----FRLFLKLVRSDIYKPNVHTYTSMIGGYCKEDKL 397

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           N    +   M +            +I+  C++G    A  ++ +M   G  P++ +YN++
Sbjct: 398 NRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGNFDRAYELMNLMDDEGFRPNIYTYNAV 457

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +  LCK      AY+LL +    G      TY +L++  C +SD+++A      M     
Sbjct: 458 IDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQSDIKQALAFFCRMNKTGF 517

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
               R+ NI + A C  K   E   +   ++     P   T  ++I+G+CK G  + ALK
Sbjct: 518 EADMRLNNILIAAFCRQKKMKESERLFQLVVSLGLVPTKETYTSMISGYCKEGDFDLALK 577

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
             ++M     C PD+ T+ ++I GL     + EA   LY+ M  RG SP  VT   V   
Sbjct: 578 YFHNM-KRHGCVPDSFTYGSLISGLCKKSMVDEACK-LYEAMIDRGLSPPEVT--RVTLA 633

Query: 361 LFRLRRVEEAK-----EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP 415
               +R + A      E  +  L I  V        ++  LC   ++  A  F+  ++  
Sbjct: 634 YEYCKRNDSASAMIVLEPLDKKLWIRTV------RTLVRKLCSEKKVGVAALFFQKLLEK 687

Query: 416 SNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGV 452
            +  D    AA       SGK +  V  L E +  GV
Sbjct: 688 DSSADRVTLAAFTTACSESGK-NNLVADLTERISRGV 723



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/354 (24%), Positives = 159/354 (44%), Gaps = 38/354 (10%)

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
           M+ +    GR + A  +V  M+ +GL+PS ++ N ++    + G    A  + +E    G
Sbjct: 176 MLRNFSEIGRLNEAVGMVMDMQNQGLSPSSITMNCVLEIAIESGLIDYAENVFDEMSVRG 235

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL 264
             P   ++K++V G   +  +++A + L  M+ +  +                       
Sbjct: 236 VCPDSSSFKLMVIGCFRDGKIQEADRWLSGMIQRGFI----------------------- 272

Query: 265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 324
                       PD  T   +++  C+ G +  A+     M+   F  P+ + FT++I G
Sbjct: 273 ------------PDNATCTLILSALCENGLVNRAIWYFRKMIDLGF-KPNLINFTSLIDG 319

Query: 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 384
           L   G I++A  +L + M + G+ P + T+ A++ GL +    E+A  +F  ++   +  
Sbjct: 320 LCKKGSIKQAFEMLEE-MVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDIYK 378

Query: 385 DST-TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
            +  TY  +I G C+ ++L+ A+  +  +       +   Y  +I G C++G    A   
Sbjct: 379 PNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGNFDRAYEL 438

Query: 444 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           +  + D G  PNI  YN VID  CK S   EAY++L +    GL  D VT+ IL
Sbjct: 439 MNLMDDEGFRPNIYTYNAVIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTIL 492



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 90/333 (27%), Positives = 142/333 (42%), Gaps = 25/333 (7%)

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQF-GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
           ++V  L    G M A       + F  +      Y V  + L    +L+KA +V++ ML 
Sbjct: 119 TVVASLASESGSMVALCFFYWAVGFEKFRHFMRLYLVTADSLIANGNLQKAHEVMRCML- 177

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
                         R    I    E + +++ M      P  IT+N V+    + G I+ 
Sbjct: 178 --------------RNFSEIGRLNEAVGMVMDMQNQGLSPSSITMNCVLEIAIESGLIDY 223

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           A  V ++M     C PD+ +F  ++ G    G+IQEA   L   M QRG+ P   T   +
Sbjct: 224 AENVFDEMSVRGVC-PDSSSFKLMVIGCFRDGKIQEADRWL-SGMIQRGFIPDNATCTLI 281

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV---W 414
           L  L     V  A   F  M+ +G   +   +  +IDGLC+   + +A    +++V   W
Sbjct: 282 LSALCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGW 341

Query: 415 PSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGV-TPNIVCYNVVIDGACKLSMKR 473
             N+   Y + A+I GLC+ G   +A     +LV S +  PN+  Y  +I G CK     
Sbjct: 342 KPNV---YTHTALIDGLCKRGWTEKAFRLFLKLVRSDIYKPNVHTYTSMIGGYCKEDKLN 398

Query: 474 EAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
            A  +   M++ GL P+  T+  L   H   GN
Sbjct: 399 RAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGN 431


>gi|334183626|ref|NP_176639.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122242336|sp|Q0WKZ3.1|PP105_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g64580
 gi|110741328|dbj|BAF02214.1| hypothetical protein [Arabidopsis thaliana]
 gi|332196134|gb|AEE34255.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 523

 Score =  171 bits (433), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 123/491 (25%), Positives = 231/491 (47%), Gaps = 45/491 (9%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           +  +A  LF +M     +P++V +T ++    +  + D+   ++ +M + G+  +  +++
Sbjct: 59  KFDDAFSLFCEMLQSRPIPSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFT 118

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
           +L+    R   +  A  L+ K+   MK     S+      +L++  C+     E   + +
Sbjct: 119 ILIHCFCRCSRLSLALALLGKM---MKLGFRPSI--VTLGSLLNGFCQGNRFQEAVSLVD 173

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
            M     V        +I+ LC++   + A  V Y M K+G+    V+YN+++ GL   G
Sbjct: 174 SMDGFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSG 233

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
               A +LL + ++    P+   +  L++    E +L +AR + + M+ +  V       
Sbjct: 234 RWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVV------- 286

Query: 249 IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 308
                                       P+V T N++INGFC  G + +A K + D++  
Sbjct: 287 ----------------------------PNVFTYNSLINGFCIHGCLGDA-KYMFDLMVS 317

Query: 309 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE 368
           K C PD VT+ T+I G     R+++ + L  + M  +G      TYN ++ G  +  ++ 
Sbjct: 318 KGCFPDVVTYNTLITGFCKSKRVEDGMKLFCE-MTYQGLVGDAFTYNTLIHGYCQAGKLN 376

Query: 369 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI 428
            A++VFN M+  GV  D  TY I++D LC + ++++A    +D+       D   Y  +I
Sbjct: 377 VAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIII 436

Query: 429 KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLN 488
           +GLCR+ K+ EA      L   GV P+ + Y  +I G C+  ++REA ++ R M+++G  
Sbjct: 437 QGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREADKLCRRMKEDGFM 496

Query: 489 PDAVTWRILDK 499
           P   + RI D+
Sbjct: 497 P---SERIYDE 504



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 98/359 (27%), Positives = 167/359 (46%), Gaps = 7/359 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C  +R  EA  L   M   G VPNVV Y T+I+G C+  +++ A +VF  M   G+
Sbjct: 156 LNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGI 215

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             +++TY+ L+ G+  +     A  L+  + +R      +  N   F  L+D+  +EG +
Sbjct: 216 RADAVTYNTLISGLSNSGRWTDAARLLRDMVKR-----KIDPNVIFFTALIDTFVKEGNL 270

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E   + ++M +   V   F    +I+  C  G    A  +  +M  +G  P +V+YN++
Sbjct: 271 LEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTL 330

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G CK        +L  E    G +    TY  L+ G C    L  A+KV   M+    
Sbjct: 331 ITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGV 390

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                  NI L  LC      + L ++  + +++   D+IT N +I G C+  +++EA  
Sbjct: 391 SPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQGLCRTDKLKEAWC 450

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           +   +   K   PDA+ + T+I GL   G  +EA + L + M + G+ P    Y+  LR
Sbjct: 451 LFRSLTR-KGVKPDAIAYITMISGLCRKGLQREA-DKLCRRMKEDGFMPSERIYDETLR 507



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 45/213 (21%), Positives = 95/213 (44%), Gaps = 2/213 (0%)

Query: 294 RIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVT 353
           + ++A  +  +M+  +   P  V FT ++  +  + +    +  LY  M   G S  + +
Sbjct: 59  KFDDAFSLFCEMLQSR-PIPSIVDFTRVLTVIAKMNKFDIVI-YLYHKMENLGISHDLYS 116

Query: 354 YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413
           +  ++    R  R+  A  +   M+ +G      T   +++G C+ N+  EA    D + 
Sbjct: 117 FTILIHCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMD 176

Query: 414 WPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKR 473
               + +  +Y  +I GLC++  ++ A+   Y +   G+  + V YN +I G        
Sbjct: 177 GFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWT 236

Query: 474 EAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           +A ++LR+M K  ++P+ + +  L       GN
Sbjct: 237 DAARLLRDMVKRKIDPNVIFFTALIDTFVKEGN 269


>gi|357140210|ref|XP_003571663.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Brachypodium distachyon]
          Length = 841

 Score =  171 bits (433), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 131/494 (26%), Positives = 227/494 (45%), Gaps = 22/494 (4%)

Query: 7   LSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLT 66
             + G+A +L  +M+  G  P VV+Y  L++  C  G M  A ++FDEM   G+  N++T
Sbjct: 258 FGQAGDAFQLLDEMRESGCQPTVVTYNILVNVLCHDGNMVDARRLFDEMVKVGIEANTIT 317

Query: 67  YSVLVRGVLRTRDVERANVLMFKLWERMKEEE-----DLSVNNAAFANLVDSLCREGYVN 121
           ++VLV G  +   ++ A     ++  R    +      LS     F   V     +  ++
Sbjct: 318 FNVLVDGYAKAGRMDEAYAACREMKARGLVPDCCTFNILSAGAYKFGKAVQLAHGQQELH 377

Query: 122 EVF--RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           E+F  RI+ D           +   ++  LC  GR   A ++V    ++G+  S+  +N+
Sbjct: 378 EMFGSRISAD-----------SVDMVVCRLCWDGRLDDAWKLVCSAIEQGVPVSVAGFNA 426

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           +V    K G   +A ++     + G +PS  T+  L+ GLC +  L+ A+ +L+ M+ K 
Sbjct: 427 LVAAYSKEGFDEQALEVYSVMNKIGLVPSSPTFNYLIMGLCNQGRLDDAQLLLEHMICKG 486

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
               T    IY+ +     N    L     M++   QPD I  +  I+G C++  + EA 
Sbjct: 487 YCVGTSF-TIYMDSYFRSGNVEGALKCWDDMVKVGVQPDFIAFSAYISGLCRLDHVNEAY 545

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           +   +M    F  P+ +T+ ++I     VG + EAL L  + M Q G  P + T N ++ 
Sbjct: 546 QAFVEMTGRGF-VPNNITYNSLISAFCRVGYVSEALKL-EKKMRQSGLIPDVFTSNILID 603

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
           G  +  R++   + F  M   G+  D  TY  +I+  C +  +  A  F + ++      
Sbjct: 604 GFCKEGRLDMMNKRFLDMYNSGLTPDVVTYNTIINAYCGAQDMSSAMIFMNKMLADGCEP 663

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           D + Y   +  LC +  ++ AV  L ELV  G  PN V YN ++DG C   + R A  + 
Sbjct: 664 DIFTYNIWMHSLCNNHLLNRAVKMLDELVAMGCMPNSVTYNTLMDGICSDVLDR-AMILT 722

Query: 480 REMRKNGLNPDAVT 493
            ++ K    P+ VT
Sbjct: 723 GKLIKMAFQPNTVT 736



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 123/494 (24%), Positives = 218/494 (44%), Gaps = 12/494 (2%)

Query: 7   LSRVGE---AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           L R GE   A K+F +M +RG  P++  +  +I G+C  G + +   +   M    V+P+
Sbjct: 185 LFRAGEVRPAWKVFVEMTARGPRPSLAIFNAMILGFCHRGLVHIGLGLLGVMWRFNVIPD 244

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           + +Y++L++G         A    F+L + M+E          +  LV+ LC +G + + 
Sbjct: 245 ACSYNILIKGYSVFGQAGDA----FQLLDEMRES-GCQPTVVTYNILVNVLCHDGNMVDA 299

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            R+ ++M +            ++D   ++GR   A      M+ RGL P   ++N +  G
Sbjct: 300 RRLFDEMVKVGIEANTITFNVLVDGYAKAGRMDEAYAACREMKARGLVPDCCTFNILSAG 359

Query: 184 LCKHGGCMR-AYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
             K G  ++ A+   E    FG   S  +  ++V  LC +  L+ A K++   + +    
Sbjct: 360 AYKFGKAVQLAHGQQELHEMFGSRISADSVDMVVCRLCWDGRLDDAWKLVCSAIEQGVPV 419

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
                N  + A        + L V   M +    P   T N +I G C  GR+++A  +L
Sbjct: 420 SVAGFNALVAAYSKEGFDEQALEVYSVMNKIGLVPSSPTFNYLIMGLCNQGRLDDAQLLL 479

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
             M+   +C     +FT  +      G ++ AL   +  M + G  P  + ++A + GL 
Sbjct: 480 EHMICKGYCV--GTSFTIYMDSYFRSGNVEGALKC-WDDMVKVGVQPDFIAFSAYISGLC 536

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
           RL  V EA + F  M G G V ++ TY  +I   C    + EA +    +     I D +
Sbjct: 537 RLDHVNEAYQAFVEMTGRGFVPNNITYNSLISAFCRVGYVSEALKLEKKMRQSGLIPDVF 596

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
               +I G C+ G++        ++ +SG+TP++V YN +I+  C       A   + +M
Sbjct: 597 TSNILIDGFCKEGRLDMMNKRFLDMYNSGLTPDVVTYNTIINAYCGAQDMSSAMIFMNKM 656

Query: 483 RKNGLNPDAVTWRI 496
             +G  PD  T+ I
Sbjct: 657 LADGCEPDIFTYNI 670



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 131/507 (25%), Positives = 232/507 (45%), Gaps = 14/507 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC    + +A +LF +M   G   N +++  L+ GY + G MD AY    EM+  G++P+
Sbjct: 290 LCHDGNMVDARRLFDEMVKVGIEANTITFNVLVDGYAKAGRMDEAYAACREMKARGLVPD 349

Query: 64  SLTYSVLVRGVLR-TRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
             T+++L  G  +  + V+ A+       + + E     ++  +   +V  LC +G +++
Sbjct: 350 CCTFNILSAGAYKFGKAVQLAHG-----QQELHEMFGSRISADSVDMVVCRLCWDGRLDD 404

Query: 123 VFR-IAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
            ++ +   + QG  V+       ++ +  + G +  A  V  VM K GL PS  ++N ++
Sbjct: 405 AWKLVCSAIEQGVPVSVA-GFNALVAAYSKEGFDEQALEVYSVMNKIGLVPSSPTFNYLI 463

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
            GLC  G    A  LLE  I  GY     ++ + ++      ++E A K    M+ K  V
Sbjct: 464 MGLCNQGRLDDAQLLLEHMICKGYCVGT-SFTIYMDSYFRSGNVEGALKCWDDMV-KVGV 521

Query: 242 DRTRIC-NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
               I  + Y+  LC + +  E     V M      P+ IT N++I+ FC++G + EALK
Sbjct: 522 QPDFIAFSAYISGLCRLDHVNEAYQAFVEMTGRGFVPNNITYNSLISAFCRVGYVSEALK 581

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +   M       PD  T   +I G    GR+ + +N  +  M   G +P +VTYN ++  
Sbjct: 582 LEKKMRQSGLI-PDVFTSNILIDGFCKEGRL-DMMNKRFLDMYNSGLTPDVVTYNTIINA 639

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
               + +  A    N ML  G   D  TY I +  LC ++ L+ A +  D++V    + +
Sbjct: 640 YCGAQDMSSAMIFMNKMLADGCEPDIFTYNIWMHSLCNNHLLNRAVKMLDELVAMGCMPN 699

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
           +  Y  ++ G+C S  +  A+    +L+     PN V  NV     CK    + A     
Sbjct: 700 SVTYNTLMDGIC-SDVLDRAMILTGKLIKMAFQPNTVTVNVFFSHFCKQGFGKRALVWAE 758

Query: 481 EMRKNGLNPDAVTWRILDKLHGNRGND 507
           +++++ +  D  T  ILD  +    +D
Sbjct: 759 KLKEDSVAFDDATMNILDWAYKEMEDD 785



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 110/450 (24%), Positives = 182/450 (40%), Gaps = 72/450 (16%)

Query: 118 GYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
           G  +E   +   +  G +     A   ++  L R+G    A +V   M  RG  PSL  +
Sbjct: 154 GMASEALVVLAHIRCGGNTPSLSAIAALLRLLFRAGEVRPAWKVFVEMTARGPRPSLAIF 213

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
           N+++ G C  G       LL    +F  +P   +Y +L++G         A ++L  M  
Sbjct: 214 NAMILGFCHRGLVHIGLGLLGVMWRFNVIPDACSYNILIKGYSVFGQAGDAFQLLDEMRE 273

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
                     NI +  LC   N  +   +   M++   + + IT N +++G+ K GR++E
Sbjct: 274 SGCQPTVVTYNILVNVLCHDGNMVDARRLFDEMVKVGIEANTITFNVLVDGYAKAGRMDE 333

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTI----------------------IFG----------- 324
           A     +M A +   PD  TF  +                      +FG           
Sbjct: 334 AYAACREMKA-RGLVPDCCTFNILSAGAYKFGKAVQLAHGQQELHEMFGSRISADSVDMV 392

Query: 325 ---LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG 381
              L   GR+ +A  L+   + Q G    +  +NA++    +    E+A EV++ M  IG
Sbjct: 393 VCRLCWDGRLDDAWKLVCSAIEQ-GVPVSVAGFNALVAAYSKEGFDEQALEVYSVMNKIG 451

Query: 382 VVADSTTYAIVIDGLCESNQLDEAK----------------------------------R 407
           +V  S T+  +I GLC   +LD+A+                                  +
Sbjct: 452 LVPSSPTFNYLIMGLCNQGRLDDAQLLLEHMICKGYCVGTSFTIYMDSYFRSGNVEGALK 511

Query: 408 FWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGAC 467
            WDD+V      D   ++A I GLCR   ++EA     E+   G  PN + YN +I   C
Sbjct: 512 CWDDMVKVGVQPDFIAFSAYISGLCRLDHVNEAYQAFVEMTGRGFVPNNITYNSLISAFC 571

Query: 468 KLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           ++    EA ++ ++MR++GL PD  T  IL
Sbjct: 572 RVGYVSEALKLEKKMRQSGLIPDVFTSNIL 601



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/315 (24%), Positives = 134/315 (42%), Gaps = 53/315 (16%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           MD       V  A K + DM   G  P+ ++++  I G CR   ++ AY+ F EM   G 
Sbjct: 497 MDSYFRSGNVEGALKCWDDMVKVGVQPDFIAFSAYISGLCRLDHVNEAYQAFVEMTGRGF 556

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +PN++TY+ L                                        + + CR GYV
Sbjct: 557 VPNNITYNSL----------------------------------------ISAFCRVGYV 576

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E  ++ + M Q   + + F    +ID  C+ GR    ++    M   GLTP +V+YN+I
Sbjct: 577 SEALKLEKKMRQSGLIPDVFTSNILIDGFCKEGRLDMMNKRFLDMYNSGLTPDVVTYNTI 636

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++  C       A   + + +  G  P   TY + +  LC    L +A K+L  +++   
Sbjct: 637 INAYCGAQDMSSAMIFMNKMLADGCEPDIFTYNIWMHSLCNNHLLNRAVKMLDELVAMGC 696

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVF----MLQTQCQPDVITLNTVINGFCKMGRIE 296
           +  +   N  +  +C     +++L+  +     +++   QP+ +T+N   + FCK G  +
Sbjct: 697 MPNSVTYNTLMDGIC-----SDVLDRAMILTGKLIKMAFQPNTVTVNVFFSHFCKQGFGK 751

Query: 297 EAL----KVLNDMVA 307
            AL    K+  D VA
Sbjct: 752 RALVWAEKLKEDSVA 766



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 72/183 (39%), Gaps = 36/183 (19%)

Query: 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 383
             L  G   EAL +L  +    G +P +    A+LR LFR   V  A +VF  M   G  
Sbjct: 149 AFLAAGMASEALVVLAHIRCG-GNTPSLSAIAALLRLLFRAGEVRPAWKVFVEMTARG-- 205

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
               + AI                                + AMI G C  G +H  +  
Sbjct: 206 -PRPSLAI--------------------------------FNAMILGFCHRGLVHIGLGL 232

Query: 444 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGN 503
           L  +    V P+   YN++I G        +A+Q+L EMR++G  P  VT+ IL  +  +
Sbjct: 233 LGVMWRFNVIPDACSYNILIKGYSVFGQAGDAFQLLDEMRESGCQPTVVTYNILVNVLCH 292

Query: 504 RGN 506
            GN
Sbjct: 293 DGN 295



 Score = 40.4 bits (93), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 3/89 (3%)

Query: 425 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484
           AA+++ L R+G++  A     E+   G  P++  +N +I G C   +      +L  M +
Sbjct: 179 AALLRLLFRAGEVRPAWKVFVEMTARGPRPSLAIFNAMILGFCHRGLVHIGLGLLGVMWR 238

Query: 485 NGLNPDAVTWRILDK---LHGNRGNDFGL 510
             + PDA ++ IL K   + G  G+ F L
Sbjct: 239 FNVIPDACSYNILIKGYSVFGQAGDAFQL 267


>gi|449433161|ref|XP_004134366.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Cucumis sativus]
          Length = 917

 Score =  171 bits (433), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 126/482 (26%), Positives = 223/482 (46%), Gaps = 50/482 (10%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M   G  P++ ++ T+I  +C+ G +++A K FDE+   G+  N++ Y++++ G ++ RD
Sbjct: 349 MIENGCKPSIATFCTIIDAFCKEGNVELARKYFDEIEDMGLSQNTIVYNIMISGYVKARD 408

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
           + +AN+L    +E M+ + D+  +   F  LV    R G   +  R+  D+     +++ 
Sbjct: 409 ISQANLL----FEEMRTK-DIVPDGITFNTLVAGHYRYGKEEDGNRLLRDLSVSGLLHDS 463

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
             C   +  LC +GR   A +++  +  +G+ PS+V++NSI+      G   RA+     
Sbjct: 464 SLCDVTVAGLCWAGRYDEAMKLLENLLGKGIPPSVVAFNSIIAAYGNAGLEERAFYAYGI 523

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK----KDVDRTRICNIYLRALC 255
            ++FG  PS  T   L+  L  +  L++A   L  M+ K     ++  T + + Y R + 
Sbjct: 524 MVKFGLTPSSSTCSSLLISLVRKGSLDEAWIALYDMIDKGFPVTNMAFTVLLDGYFR-IG 582

Query: 256 LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA 315
            +     L N    M      PD +     ING C  G + +A  V +DM+   F  P+ 
Sbjct: 583 AVNMAESLWNE---MKGRGVFPDAVAFAAFINGLCISGLMTDAYDVFSDMLRKGF-VPNN 638

Query: 316 VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN 375
             + ++I G   VG++ EAL L+ + M +RG  P I T N ++ GL +  R++ A E F 
Sbjct: 639 FVYNSLIGGFCKVGKLNEALKLVRE-MNKRGLLPDIFTVNMIICGLCKQGRMKLAIETFM 697

Query: 376 CMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG 435
            M  +G+  D  TY  +IDG                                    C++ 
Sbjct: 698 DMCRMGLSPDIVTYNTLIDGY-----------------------------------CKAF 722

Query: 436 KIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWR 495
            +  A   + ++ DSG  P++  YN+ I G C +     A  IL E+   G+ P+ VT+ 
Sbjct: 723 DVGGADDLMMKMSDSGWEPDLTTYNIRIHGYCTVRKINRAVMILEELISVGIVPNTVTYN 782

Query: 496 IL 497
            +
Sbjct: 783 TM 784



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 121/487 (24%), Positives = 225/487 (46%), Gaps = 9/487 (1%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           EA ++   M+  G  PN  + + L     R G+    +K+F ++   G  PN+ T+++L+
Sbjct: 236 EALEILSKMREVGVTPNPSAISILFRLLIRAGDCGAVWKLFGDVVRKGPCPNNFTFNLLI 295

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP 131
               R +   R    +  +  + + E D+   N     ++++ C +G  +    +   M 
Sbjct: 296 LEFCR-KGWTRIGEALLHVMGKFRCEPDVYSYNI----VINANCLKGQSSYALHLLNLMI 350

Query: 132 QGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCM 191
           +            +ID+ C+ G    A +    +   GL+ + + YN ++ G  K     
Sbjct: 351 ENGCKPSIATFCTIIDAFCKEGNVELARKYFDEIEDMGLSQNTIVYNIMISGYVKARDIS 410

Query: 192 RAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYL 251
           +A  L EE      +P   T+  LV G       E   ++L+ +     +  + +C++ +
Sbjct: 411 QANLLFEEMRTKDIVPDGITFNTLVAGHYRYGKEEDGNRLLRDLSVSGLLHDSSLCDVTV 470

Query: 252 RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKF- 310
             LC      E + +L  +L     P V+  N++I  +   G  E A      MV  KF 
Sbjct: 471 AGLCWAGRYDEAMKLLENLLGKGIPPSVVAFNSIIAAYGNAGLEERAFYAYGIMV--KFG 528

Query: 311 CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEA 370
             P + T ++++  L+  G + EA   LY  M  +G+    + +  +L G FR+  V  A
Sbjct: 529 LTPSSSTCSSLLISLVRKGSLDEAWIALYD-MIDKGFPVTNMAFTVLLDGYFRIGAVNMA 587

Query: 371 KEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKG 430
           + ++N M G GV  D+  +A  I+GLC S  + +A   + D++    + +N+VY ++I G
Sbjct: 588 ESLWNEMKGRGVFPDAVAFAAFINGLCISGLMTDAYDVFSDMLRKGFVPNNFVYNSLIGG 647

Query: 431 LCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD 490
            C+ GK++EA+  + E+   G+ P+I   N++I G CK    + A +   +M + GL+PD
Sbjct: 648 FCKVGKLNEALKLVREMNKRGLLPDIFTVNMIICGLCKQGRMKLAIETFMDMCRMGLSPD 707

Query: 491 AVTWRIL 497
            VT+  L
Sbjct: 708 IVTYNTL 714



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 135/504 (26%), Positives = 223/504 (44%), Gaps = 57/504 (11%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C    V  A K F +++  G   N + Y  +I GY +  ++  A  +F+EMR   +
Sbjct: 365 IDAFCKEGNVELARKYFDEIEDMGLSQNTIVYNIMISGYVKARDISQANLLFEEMRTKDI 424

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P+ +T++ LV G  R    E  N L+           DLSV+                 
Sbjct: 425 VPDGITFNTLVAGHYRYGKEEDGNRLL----------RDLSVSGL--------------- 459

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                          +++   C   +  LC +GR   A +++  +  +G+ PS+V++NSI
Sbjct: 460 ---------------LHDSSLCDVTVAGLCWAGRYDEAMKLLENLLGKGIPPSVVAFNSI 504

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK-- 238
           +      G   RA+      ++FG  PS  T   L+  L  +  L++A   L  M+ K  
Sbjct: 505 IAAYGNAGLEERAFYAYGIMVKFGLTPSSSTCSSLLISLVRKGSLDEAWIALYDMIDKGF 564

Query: 239 --KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIE 296
              ++  T + + Y R +  +     L N    M      PD +     ING C  G + 
Sbjct: 565 PVTNMAFTVLLDGYFR-IGAVNMAESLWNE---MKGRGVFPDAVAFAAFINGLCISGLMT 620

Query: 297 EALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
           +A  V +DM+   F  P+   + ++I G   VG++ EAL L+ + M +RG  P I T N 
Sbjct: 621 DAYDVFSDMLRKGF-VPNNFVYNSLIGGFCKVGKLNEALKLVRE-MNKRGLLPDIFTVNM 678

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQL---DEAKRFWDDIV 413
           ++ GL +  R++ A E F  M  +G+  D  TY  +IDG C++  +   D+      D  
Sbjct: 679 IICGLCKQGRMKLAIETFMDMCRMGLSPDIVTYNTLIDGYCKAFDVGGADDLMMKMSDSG 738

Query: 414 WPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKR 473
           W  ++     Y   I G C   KI+ AV  L EL+  G+ PN V YN +I+  C + +  
Sbjct: 739 WEPDLT---TYNIRIHGYCTVRKINRAVMILEELISVGIVPNTVTYNTMINAVCNVILD- 794

Query: 474 EAYQILREMRKNGLNPDAVTWRIL 497
            A  +  ++ K    P+ VT  +L
Sbjct: 795 HAMILTAKLLKMAFVPNTVTVNVL 818



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 89/385 (23%), Positives = 174/385 (45%), Gaps = 37/385 (9%)

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
           ++ +  +S  +  A  ++  MR+ G+TP+  + + +   L + G C   ++L  + ++ G
Sbjct: 224 LMRAFVKSEMHFEALEILSKMREVGVTPNPSAISILFRLLIRAGDCGAVWKLFGDVVRKG 283

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL 264
             P+  T+ +L+   C +        +L  M   +        NI + A CL    +  L
Sbjct: 284 PCPNNFTFNLLILEFCRKGWTRIGEALLHVMGKFRCEPDVYSYNIVINANCLKGQSSYAL 343

Query: 265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 324
           ++L  M++  C+P + T  T+I+ FCK G +E A K   D +     + + + +  +I G
Sbjct: 344 HLLNLMIENGCKPSIATFCTIIDAFCKEGNVELARKYF-DEIEDMGLSQNTIVYNIMISG 402

Query: 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 384
            +    I +A NLL++ M  +   P  +T+N ++ G +R  + E+   +   +   G++ 
Sbjct: 403 YVKARDISQA-NLLFEEMRTKDIVPDGITFNTLVAGHYRYGKEEDGNRLLRDLSVSGLLH 461

Query: 385 DSTTYAIVIDGLCESNQLDEAKRFWDDI----VWPSNIHDN----------------YVY 424
           DS+   + + GLC + + DEA +  +++    + PS +  N                Y Y
Sbjct: 462 DSSLCDVTVAGLCWAGRYDEAMKLLENLLGKGIPPSVVAFNSIIAAYGNAGLEERAFYAY 521

Query: 425 AAMIK---------------GLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKL 469
             M+K                L R G + EA   LY+++D G     + + V++DG  ++
Sbjct: 522 GIMVKFGLTPSSSTCSSLLISLVRKGSLDEAWIALYDMIDKGFPVTNMAFTVLLDGYFRI 581

Query: 470 SMKREAYQILREMRKNGLNPDAVTW 494
                A  +  EM+  G+ PDAV +
Sbjct: 582 GAVNMAESLWNEMKGRGVFPDAVAF 606



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 149/300 (49%), Gaps = 11/300 (3%)

Query: 4   LCGLSRVG---EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           L  L R G   EA    +DM  +G     +++T L+ GY R G +++A  +++EM+  GV
Sbjct: 540 LISLVRKGSLDEAWIALYDMIDKGFPVTNMAFTVLLDGYFRIGAVNMAESLWNEMKGRGV 599

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+++ ++  + G+  +  +  A    + ++  M  +     NN  + +L+   C+ G +
Sbjct: 600 FPDAVAFAAFINGLCISGLMTDA----YDVFSDMLRK-GFVPNNFVYNSLIGGFCKVGKL 654

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           NE  ++  +M +   + + F    +I  LC+ GR   A      M + GL+P +V+YN++
Sbjct: 655 NEALKLVREMNKRGLLPDIFTVNMIICGLCKQGRMKLAIETFMDMCRMGLSPDIVTYNTL 714

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G CK      A  L+ +    G+ P   TY + + G C    + +A  +L+ ++S   
Sbjct: 715 IDGYCKAFDVGGADDLMMKMSDSGWEPDLTTYNIRIHGYCTVRKINRAVMILEELISVGI 774

Query: 241 VDRTRICNIYLRALC-LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
           V  T   N  + A+C +I +   +L     +L+    P+ +T+N +++ FCK G  E+A+
Sbjct: 775 VPNTVTYNTMINAVCNVILDHAMILTAK--LLKMAFVPNTVTVNVLLSQFCKQGMPEKAI 832



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 109/232 (46%), Gaps = 8/232 (3%)

Query: 277 PDVITLNTVINGFCKMG--RIEEALKVLNDMVAGKF-CAPDAVTFTTIIFGLLNVGRIQE 333
           P+  T N +I  FC+ G  RI EAL      V GKF C PD  ++  +I      G+   
Sbjct: 286 PNNFTFNLLILEFCRKGWTRIGEALL----HVMGKFRCEPDVYSYNIVINANCLKGQSSY 341

Query: 334 ALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVI 393
           AL+LL  +M + G  P I T+  ++    +   VE A++ F+ +  +G+  ++  Y I+I
Sbjct: 342 ALHLL-NLMIENGCKPSIATFCTIIDAFCKEGNVELARKYFDEIEDMGLSQNTIVYNIMI 400

Query: 394 DGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVT 453
            G  ++  + +A   ++++     + D   +  ++ G  R GK  +    L +L  SG+ 
Sbjct: 401 SGYVKARDISQANLLFEEMRTKDIVPDGITFNTLVAGHYRYGKEEDGNRLLRDLSVSGLL 460

Query: 454 PNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
            +    +V + G C      EA ++L  +   G+ P  V +  +   +GN G
Sbjct: 461 HDSSLCDVTVAGLCWAGRYDEAMKLLENLLGKGIPPSVVAFNSIIAAYGNAG 512



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 60/251 (23%), Positives = 105/251 (41%), Gaps = 6/251 (2%)

Query: 260 PTELLNVLVFMLQTQ--CQPDVITLNTVINGFCKMGRIEEALKVLNDM-VAGKFCAPDAV 316
           P    N+  FM +     + D   L+T++  F K     EAL++L+ M   G    P A+
Sbjct: 197 PGRSKNLAAFMWEGHRVYESDYSVLDTLMRAFVKSEMHFEALEILSKMREVGVTPNPSAI 256

Query: 317 TFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNC 376
           +   I+F LL       A+  L+  + ++G  P   T+N ++    R       + + + 
Sbjct: 257 S---ILFRLLIRAGDCGAVWKLFGDVVRKGPCPNNFTFNLLILEFCRKGWTRIGEALLHV 313

Query: 377 MLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGK 436
           M       D  +Y IVI+  C   Q   A    + ++          +  +I   C+ G 
Sbjct: 314 MGKFRCEPDVYSYNIVINANCLKGQSSYALHLLNLMIENGCKPSIATFCTIIDAFCKEGN 373

Query: 437 IHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRI 496
           +  A  +  E+ D G++ N + YN++I G  K     +A  +  EMR   + PD +T+  
Sbjct: 374 VELARKYFDEIEDMGLSQNTIVYNIMISGYVKARDISQANLLFEEMRTKDIVPDGITFNT 433

Query: 497 LDKLHGNRGND 507
           L   H   G +
Sbjct: 434 LVAGHYRYGKE 444


>gi|302785562|ref|XP_002974552.1| hypothetical protein SELMODRAFT_101881 [Selaginella moellendorffii]
 gi|300157447|gb|EFJ24072.1| hypothetical protein SELMODRAFT_101881 [Selaginella moellendorffii]
          Length = 495

 Score =  171 bits (433), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 119/445 (26%), Positives = 204/445 (45%), Gaps = 50/445 (11%)

Query: 28  NVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLM 87
            V +Y   ++   + G    A K+FD+M +   LPN  TY +++RG+      + A  L+
Sbjct: 36  TVFTYNAYLNALVKGGHGSKARKIFDDMLYKECLPNIYTYGIVLRGLCDDAKTDAALELL 95

Query: 88  FKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMID 147
             +  +M       VN      LV  LC+ G V+  + + + +    S++   +   +  
Sbjct: 96  QDMESKMLTPTTFIVN-----MLVSCLCKNGKVDAAYELYKRLSDECSLD-RISYNMLTY 149

Query: 148 SLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQ----F 203
            LC++ +   A  V   M +  + PSL++YN +++G C+ G   +A  LLEE I+     
Sbjct: 150 GLCKADQIDRALAVFGEMEENAVVPSLLTYNGLLYGYCRAGRMEQAMTLLEEMIEGKKGS 209

Query: 204 GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTEL 263
             +P  ++Y  ++ G C    L  AR VL+                              
Sbjct: 210 DVVPDMYSYNTVISGFCKARQLPTARYVLR------------------------------ 239

Query: 264 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF 323
                 M+++ C P+V+T NT+++G C  G+++EA  +   MV  + C P AVT+T +I 
Sbjct: 240 -----RMIKSGCSPNVVTFNTLLDGLCLTGKLDEANAMFEYMVE-RNCEPTAVTYTVLIT 293

Query: 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 383
           G     RI +A N  +  M +RG  P + TY A++ GL    +VE+A E+   M   G  
Sbjct: 294 GHARALRIDKA-NDYFVDMLRRGVEPNVYTYTALIGGLCDANKVEDALEILKRMSSTGRE 352

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH---DNYVYAAMIKGLCRSGKIHEA 440
            +  TY  VI  LC+  Q++ A + ++D +         D+Y Y+ ++  LCR  K  EA
Sbjct: 353 PNVVTYTRVIGALCKGGQIERATKLFNDAMGSRTAKCKPDSYAYSTIVYWLCRQSKFLEA 412

Query: 441 VHFLYELVDSGVTPNIVCYNVVIDG 465
             +   +V+S +      Y  + DG
Sbjct: 413 YEYFLRMVESKLVAKPHIYKAMADG 437



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 96/342 (28%), Positives = 176/342 (51%), Gaps = 8/342 (2%)

Query: 158 ASRVV-YVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLV 216
           ASRV  +  R+     ++ +YN+ ++ L K G   +A ++ ++ +    LP+ +TY +++
Sbjct: 20  ASRVFKWAARQEDFQHTVFTYNAYLNALVKGGHGSKARKIFDDMLYKECLPNIYTYGIVL 79

Query: 217 EGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN-PTELLNVLVFMLQTQC 275
            GLC ++  + A ++LQ M SK     T I N+ +  LC  KN   +    L   L  +C
Sbjct: 80  RGLCDDAKTDAALELLQDMESKMLTPTTFIVNMLVSCLC--KNGKVDAAYELYKRLSDEC 137

Query: 276 QPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEAL 335
             D I+ N +  G CK  +I+ AL V  +M       P  +T+  +++G    GR+++A+
Sbjct: 138 SLDRISYNMLTYGLCKADQIDRALAVFGEMEENAV-VPSLLTYNGLLYGYCRAGRMEQAM 196

Query: 336 NLLYQVMPQRGYS---PGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIV 392
            LL +++  +  S   P + +YN V+ G  + R++  A+ V   M+  G   +  T+  +
Sbjct: 197 TLLEEMIEGKKGSDVVPDMYSYNTVISGFCKARQLPTARYVLRRMIKSGCSPNVVTFNTL 256

Query: 393 IDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGV 452
           +DGLC + +LDEA   ++ +V  +       Y  +I G  R+ +I +A  +  +++  GV
Sbjct: 257 LDGLCLTGKLDEANAMFEYMVERNCEPTAVTYTVLITGHARALRIDKANDYFVDMLRRGV 316

Query: 453 TPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
            PN+  Y  +I G C  +   +A +IL+ M   G  P+ VT+
Sbjct: 317 EPNVYTYTALIGGLCDANKVEDALEILKRMSSTGREPNVVTY 358



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 103/428 (24%), Positives = 194/428 (45%), Gaps = 50/428 (11%)

Query: 11  GEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVL 70
            +A K+F DM  +  +PN+ +Y  ++ G C   + D A ++  +M    + P +   ++L
Sbjct: 54  SKARKIFDDMLYKECLPNIYTYGIVLRGLCDDAKTDAALELLQDMESKMLTPTTFIVNML 113

Query: 71  VRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDM 130
           V  + +   V+ A    ++L++R+ +E   S++  ++  L   LC+   ++    +  +M
Sbjct: 114 VSCLCKNGKVDAA----YELYKRLSDE--CSLDRISYNMLTYGLCKADQIDRALAVFGEM 167

Query: 131 PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGC 190
            +   V                                   PSL++YN +++G C+ G  
Sbjct: 168 EENAVV-----------------------------------PSLLTYNGLLYGYCRAGRM 192

Query: 191 MRAYQLLEEGIQ----FGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRI 246
            +A  LLEE I+       +P  ++Y  ++ G C    L  AR VL+ M+          
Sbjct: 193 EQAMTLLEEMIEGKKGSDVVPDMYSYNTVISGFCKARQLPTARYVLRRMIKSGCSPNVVT 252

Query: 247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV 306
            N  L  LCL     E   +  +M++  C+P  +T   +I G  +  RI++A     DM+
Sbjct: 253 FNTLLDGLCLTGKLDEANAMFEYMVERNCEPTAVTYTVLITGHARALRIDKANDYFVDML 312

Query: 307 AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 366
             +   P+  T+T +I GL +  ++++AL +L + M   G  P +VTY  V+  L +  +
Sbjct: 313 R-RGVEPNVYTYTALIGGLCDANKVEDALEIL-KRMSSTGREPNVVTYTRVIGALCKGGQ 370

Query: 367 VEEAKEVFNCMLGIGVV---ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
           +E A ++FN  +G        DS  Y+ ++  LC  ++  EA  ++  +V    +   ++
Sbjct: 371 IERATKLFNDAMGSRTAKCKPDSYAYSTIVYWLCRQSKFLEAYEYFLRMVESKLVAKPHI 430

Query: 424 YAAMIKGL 431
           Y AM  GL
Sbjct: 431 YKAMADGL 438



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 106/409 (25%), Positives = 191/409 (46%), Gaps = 10/409 (2%)

Query: 86  LMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHM 145
           L  ++++    +ED       +   +++L + G+ ++  +I +DM   + +   +  G +
Sbjct: 19  LASRVFKWAARQEDFQHTVFTYNAYLNALVKGGHGSKARKIFDDMLYKECLPNIYTYGIV 78

Query: 146 IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY 205
           +  LC   +   A  ++  M  + LTP+    N +V  LCK+G    AY+L +       
Sbjct: 79  LRGLCDDAKTDAALELLQDMESKMLTPTTFIVNMLVSCLCKNGKVDAAYELYKRLSDECS 138

Query: 206 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 265
           L    +Y +L  GLC    +++A  V   M     V      N  L   C      + + 
Sbjct: 139 L-DRISYNMLTYGLCKADQIDRALAVFGEMEENAVVPSLLTYNGLLYGYCRAGRMEQAMT 197

Query: 266 VLVFMLQ----TQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTI 321
           +L  M++    +   PD+ + NTVI+GFCK  ++  A  VL  M+    C+P+ VTF T+
Sbjct: 198 LLEEMIEGKKGSDVVPDMYSYNTVISGFCKARQLPTARYVLRRMIKSG-CSPNVVTFNTL 256

Query: 322 IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG 381
           + GL   G++ EA N +++ M +R   P  VTY  ++ G  R  R+++A + F  ML  G
Sbjct: 257 LDGLCLTGKLDEA-NAMFEYMVERNCEPTAVTYTVLITGHARALRIDKANDYFVDMLRRG 315

Query: 382 VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAV 441
           V  +  TY  +I GLC++N++++A      +       +   Y  +I  LC+ G+I  A 
Sbjct: 316 VEPNVYTYTALIGGLCDANKVEDALEILKRMSSTGREPNVVTYTRVIGALCKGGQIERAT 375

Query: 442 HFLYELVDSGVT---PNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
               + + S      P+   Y+ ++   C+ S   EAY+    M ++ L
Sbjct: 376 KLFNDAMGSRTAKCKPDSYAYSTIVYWLCRQSKFLEAYEYFLRMVESKL 424



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 93/378 (24%), Positives = 178/378 (47%), Gaps = 17/378 (4%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMR-HCGVLP 62
           LC  ++   A +L  DM+S+   P       L+   C+ G++D AY+++  +   C +  
Sbjct: 82  LCDDAKTDAALELLQDMESKMLTPTTFIVNMLVSCLCKNGKVDAAYELYKRLSDECSL-- 139

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           + ++Y++L  G+ +   ++RA  +  ++     EE  +  +   +  L+   CR G + +
Sbjct: 140 DRISYNMLTYGLCKADQIDRALAVFGEM-----EENAVVPSLLTYNGLLYGYCRAGRMEQ 194

Query: 123 VFRIAEDMPQGKS----VNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
              + E+M +GK     V + ++   +I   C++ +   A  V+  M K G +P++V++N
Sbjct: 195 AMTLLEEMIEGKKGSDVVPDMYSYNTVISGFCKARQLPTARYVLRRMIKSGCSPNVVTFN 254

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
           +++ GLC  G    A  + E  ++    P+  TY VL+ G      ++KA      ML +
Sbjct: 255 TLLDGLCLTGKLDEANAMFEYMVERNCEPTAVTYTVLITGHARALRIDKANDYFVDMLRR 314

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
                       +  LC      + L +L  M  T  +P+V+T   VI   CK G+IE A
Sbjct: 315 GVEPNVYTYTALIGGLCDANKVEDALEILKRMSSTGREPNVVTYTRVIGALCKGGQIERA 374

Query: 299 LKVLNDMVAGKF--CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYS-PGIVTYN 355
            K+ ND +  +   C PD+  ++TI++ L    +  EA     +++  +  + P I  Y 
Sbjct: 375 TKLFNDAMGSRTAKCKPDSYAYSTIVYWLCRQSKFLEAYEYFLRMVESKLVAKPHI--YK 432

Query: 356 AVLRGLFRLRRVEEAKEV 373
           A+  GL  ++  E+ + V
Sbjct: 433 AMADGLELVQETEKVERV 450



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 135/291 (46%), Gaps = 13/291 (4%)

Query: 228 ARKVLQFMLSKKDVDRTRIC-NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVI 286
           A +V ++   ++D   T    N YL AL    + ++   +   ML  +C P++ T   V+
Sbjct: 20  ASRVFKWAARQEDFQHTVFTYNAYLNALVKGGHGSKARKIFDDMLYKECLPNIYTYGIVL 79

Query: 287 NGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
            G C   + + AL++L DM   K   P       ++  L   G++  A  L  ++  +  
Sbjct: 80  RGLCDDAKTDAALELLQDM-ESKMLTPTTFIVNMLVSCLCKNGKVDAAYELYKRLSDE-- 136

Query: 347 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
            S   ++YN +  GL +  +++ A  VF  M    VV    TY  ++ G C + ++++A 
Sbjct: 137 CSLDRISYNMLTYGLCKADQIDRALAVFGEMEENAVVPSLLTYNGLLYGYCRAGRMEQAM 196

Query: 407 RFWDDIVWPSN----IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVV 462
              ++++        + D Y Y  +I G C++ ++  A + L  ++ SG +PN+V +N +
Sbjct: 197 TLLEEMIEGKKGSDVVPDMYSYNTVISGFCKARQLPTARYVLRRMIKSGCSPNVVTFNTL 256

Query: 463 IDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG-----NRGNDF 508
           +DG C      EA  +   M +    P AVT+ +L   H      ++ ND+
Sbjct: 257 LDGLCLTGKLDEANAMFEYMVERNCEPTAVTYTVLITGHARALRIDKANDY 307



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/231 (23%), Positives = 96/231 (41%), Gaps = 37/231 (16%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   ++ EA+ +F  M  R   P  V+YT LI G+ R   +D A   F +M   GV
Sbjct: 257 LDGLCLTGKLDEANAMFEYMVERNCEPTAVTYTVLITGHARALRIDKANDYFVDMLRRGV 316

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN  TY+ L+ G+     VE A  ++ ++    +E      N   +  ++ +LC+ G +
Sbjct: 317 EPNVYTYTALIGGLCDANKVEDALEILKRMSSTGREP-----NVVTYTRVIGALCKGGQI 371

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
               ++  D    ++              C+                    P   +Y++I
Sbjct: 372 ERATKLFNDAMGSRTAK------------CK--------------------PDSYAYSTI 399

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKV 231
           V+ LC+    + AY+     ++   +   H YK + +GL    + EK  +V
Sbjct: 400 VYWLCRQSKFLEAYEYFLRMVESKLVAKPHIYKAMADGLELVQETEKVERV 450



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 82/174 (47%), Gaps = 1/174 (0%)

Query: 321 IIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI 380
           +I  L N+   + A  +      Q  +   + TYNA L  L +     +A+++F+ ML  
Sbjct: 7   VIHVLENIKSPKLASRVFKWAARQEDFQHTVFTYNAYLNALVKGGHGSKARKIFDDMLYK 66

Query: 381 GVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEA 440
             + +  TY IV+ GLC+  + D A     D+         ++   ++  LC++GK+ +A
Sbjct: 67  ECLPNIYTYGIVLRGLCDDAKTDAALELLQDMESKMLTPTTFIVNMLVSCLCKNGKV-DA 125

Query: 441 VHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
            + LY+ +    + + + YN++  G CK      A  +  EM +N + P  +T+
Sbjct: 126 AYELYKRLSDECSLDRISYNMLTYGLCKADQIDRALAVFGEMEENAVVPSLLTY 179


>gi|358346363|ref|XP_003637238.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503173|gb|AES84376.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 663

 Score =  171 bits (433), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 119/478 (24%), Positives = 232/478 (48%), Gaps = 22/478 (4%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M   G +P+VV+ +++++G+CR G++  A  +F EM   G+ PN ++Y+ ++  + ++  
Sbjct: 1   MIMNGIMPDVVTCSSILYGFCRHGKLTEAAVLFREMYEMGLDPNHVSYATIINSLFKSGR 60

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
           V  A    F L  +M     +S +      ++D L + G   E   + E + +       
Sbjct: 61  VMEA----FNLQSQMV-VRGISFDIVTCTTVMDGLFKVGKTKEAEEVFETILKLNLAPNC 115

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
                ++D  C+ G+   A  V+  M K  + P++++++SI++G  K G   +A  +L E
Sbjct: 116 VTYSALLDGYCKLGKMELAELVLQKMEKEHVPPNVITFSSIINGYAKKGMLSKAVDVLRE 175

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
            +Q   +P+   Y +L++G     + + A    + M S++  +   I +I L  L  +  
Sbjct: 176 MVQRNVMPNTIVYAILIDGYFKAGEQDVADDFCKEMKSRRLEESNVIFDILLNNLKRVGR 235

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
             E  ++++ M      PD++   ++I+G+ K G    AL ++ +M   K    D V + 
Sbjct: 236 MDEARSLIIDMYSKGIDPDIVNYASLIDGYFKEGNQLAALSIVQEM-KEKNIRFDVVAYN 294

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
            +I GLL +G+                Y P  V    +  GL    + E+A ++ N M  
Sbjct: 295 ALIKGLLRLGK----------------YDPRYVCSRMIELGLAPDCKTEDALDILNEMKS 338

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
            G++ ++ TY I+I GLC++  +++A+   D+++    +     +  ++K   RS K  +
Sbjct: 339 YGIMPNAVTYNILIGGLCKTGAVEKAESALDEMLVMEFVPTPITHKFLVKAYSRSEKADK 398

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            +    +LV SG+  ++  YN +I   C+L M R+A  +L EM K G++ D VT+  L
Sbjct: 399 ILQIHEKLVASGLELSLTVYNTLITVFCRLGMTRKAKVVLDEMVKRGISADLVTYNAL 456



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 132/524 (25%), Positives = 241/524 (45%), Gaps = 45/524 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C L ++  A  +   M+     PNV++++++I+GY + G +  A  V  EM    V
Sbjct: 122 LDGYCKLGKMELAELVLQKMEKEHVPPNVITFSSIINGYAKKGMLSKAVDVLREMVQRNV 181

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +PN++ Y++L+ G  +  + + A+    ++  R  EE     +N  F  L+++L R G +
Sbjct: 182 MPNTIVYAILIDGYFKAGEQDVADDFCKEMKSRRLEE-----SNVIFDILLNNLKRVGRM 236

Query: 121 NEVFRIAEDMPQGKSVNEEFA-CGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           +E   +  DM   K ++ +      +ID   + G    A  +V  M+++ +   +V+YN+
Sbjct: 237 DEARSLIIDM-YSKGIDPDIVNYASLIDGYFKEGNQLAALSIVQEMKEKNIRFDVVAYNA 295

Query: 180 IVHGLCKHGG------CMR--------------AYQLLEEGIQFGYLPSEHTYKVLVEGL 219
           ++ GL + G       C R              A  +L E   +G +P+  TY +L+ GL
Sbjct: 296 LIKGLLRLGKYDPRYVCSRMIELGLAPDCKTEDALDILNEMKSYGIMPNAVTYNILIGGL 355

Query: 220 CGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDV 279
           C    +EKA   L  ML  + V         ++A    +   ++L +   ++ +  +  +
Sbjct: 356 CKTGAVEKAESALDEMLVMEFVPTPITHKFLVKAYSRSEKADKILQIHEKLVASGLELSL 415

Query: 280 ITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLY 339
              NT+I  FC++G   +A  VL++MV     A D VT+  +I G      +++AL   Y
Sbjct: 416 TVYNTLITVFCRLGMTRKAKVVLDEMVKRGISA-DLVTYNALIRGYCTGSHVEKALKT-Y 473

Query: 340 QVMPQRGYSPGIVTYNAVLRGL----FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG 395
             M   G +P I TYN +L GL         +EE +++ + M   G+V ++ TY I++ G
Sbjct: 474 SQMFVDGIAPNITTYNTLLGGLSNAGLMEEMMEETEKLVSEMNERGLVPNAATYDILVSG 533

Query: 396 LCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN 455
                   +      +++    +     Y  +I    +SGK+ EA   L +L+  G  PN
Sbjct: 534 YGRVGNRKKTIILHIEMITKGFVPTLKTYNVLISDYAKSGKMIEARELLNDLLTKGRIPN 593

Query: 456 IVCYNVV------------IDGACKLSMKREAYQILREMRKNGL 487
              Y+++            ID + K S + E  ++L EM + GL
Sbjct: 594 SFTYDILTCGWLNLSYEPEIDRSLKRSYEIEVKKLLIEMGRKGL 637



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 122/542 (22%), Positives = 229/542 (42%), Gaps = 61/542 (11%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIH-------------------------- 37
            C   ++ EA  LF +M   G  PN VSY T+I+                          
Sbjct: 20  FCRHGKLTEAAVLFREMYEMGLDPNHVSYATIINSLFKSGRVMEAFNLQSQMVVRGISFD 79

Query: 38  ---------GYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMF 88
                    G  + G+   A +VF+ +    + PN +TYS L+ G  +   +E A +++ 
Sbjct: 80  IVTCTTVMDGLFKVGKTKEAEEVFETILKLNLAPNCVTYSALLDGYCKLGKMELAELVLQ 139

Query: 89  KLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDS 148
           K+     E+E +  N   F+++++   ++G +++   +  +M Q   +        +ID 
Sbjct: 140 KM-----EKEHVPPNVITFSSIINGYAKKGMLSKAVDVLREMVQRNVMPNTIVYAILIDG 194

Query: 149 LCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPS 208
             ++G    A      M+ R L  S V ++ +++ L + G    A  L+ +    G  P 
Sbjct: 195 YFKAGEQDVADDFCKEMKSRRLEESNVIFDILLNNLKRVGRMDEARSLIIDMYSKGIDPD 254

Query: 209 EHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLV 268
              Y  L++G   E +   A  ++Q M  K         N  ++ L  +    +   V  
Sbjct: 255 IVNYASLIDGYFKEGNQLAALSIVQEMKEKNIRFDVVAYNALIKGLLRL-GKYDPRYVCS 313

Query: 269 FMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNV 328
            M++    PD           CK    E+AL +LN+M +     P+AVT+  +I GL   
Sbjct: 314 RMIELGLAPD-----------CK---TEDALDILNEMKSYGIM-PNAVTYNILIGGLCKT 358

Query: 329 GRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTT 388
           G +++A + L +++    + P  +T+  +++   R  + ++  ++   ++  G+    T 
Sbjct: 359 GAVEKAESALDEMLVME-FVPTPITHKFLVKAYSRSEKADKILQIHEKLVASGLELSLTV 417

Query: 389 YAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELV 448
           Y  +I   C      +AK   D++V      D   Y A+I+G C    + +A+    ++ 
Sbjct: 418 YNTLITVFCRLGMTRKAKVVLDEMVKRGISADLVTYNALIRGYCTGSHVEKALKTYSQMF 477

Query: 449 DSGVTPNIVCYNVVIDGACKLSM----KREAYQILREMRKNGLNPDAVTWRILDKLHGNR 504
             G+ PNI  YN ++ G     +      E  +++ EM + GL P+A T+ IL   +G  
Sbjct: 478 VDGIAPNITTYNTLLGGLSNAGLMEEMMEETEKLVSEMNERGLVPNAATYDILVSGYGRV 537

Query: 505 GN 506
           GN
Sbjct: 538 GN 539



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 105/387 (27%), Positives = 171/387 (44%), Gaps = 32/387 (8%)

Query: 141 ACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAY----QL 196
            C  ++   CR G+   A+ +   M + GL P+ VSY +I++ L K G  M A+    Q+
Sbjct: 12  TCSSILYGFCRHGKLTEAAVLFREMYEMGLDPNHVSYATIINSLFKSGRVMEAFNLQSQM 71

Query: 197 LEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCL 256
           +  GI F  +    T   +++GL      ++A +V + +L           +  L   C 
Sbjct: 72  VVRGISFDIV----TCTTVMDGLFKVGKTKEAEEVFETILKLNLAPNCVTYSALLDGYCK 127

Query: 257 IKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAV 316
           +        VL  M +    P+VIT +++ING+ K G + +A+ VL +MV  +   P+ +
Sbjct: 128 LGKMELAELVLQKMEKEHVPPNVITFSSIINGYAKKGMLSKAVDVLREMVQ-RNVMPNTI 186

Query: 317 TFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNC 376
            +  +I G    G  Q+  +   + M  R      V ++ +L  L R+ R++EA+ +   
Sbjct: 187 VYAILIDGYFKAGE-QDVADDFCKEMKSRRLEESNVIFDILLNNLKRVGRMDEARSLIID 245

Query: 377 MLGIGVVADSTTYAIVIDG-LCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG 435
           M   G+  D   YA +IDG   E NQL  A     ++   +   D   Y A+IKGL R G
Sbjct: 246 MYSKGIDPDIVNYASLIDGYFKEGNQL-AALSIVQEMKEKNIRFDVVAYNALIKGLLRLG 304

Query: 436 K--------------------IHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREA 475
           K                      +A+  L E+   G+ PN V YN++I G CK     +A
Sbjct: 305 KYDPRYVCSRMIELGLAPDCKTEDALDILNEMKSYGIMPNAVTYNILIGGLCKTGAVEKA 364

Query: 476 YQILREMRKNGLNPDAVTWRILDKLHG 502
              L EM      P  +T + L K + 
Sbjct: 365 ESALDEMLVMEFVPTPITHKFLVKAYS 391



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 80/331 (24%), Positives = 158/331 (47%), Gaps = 37/331 (11%)

Query: 169 GLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKA 228
           G+ P +V+ +SI++G C+HG    A  L  E  + G  P+  +Y  ++  L       K+
Sbjct: 5   GIMPDVVTCSSILYGFCRHGKLTEAAVLFREMYEMGLDPNHVSYATIINSLF------KS 58

Query: 229 RKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVING 288
            +V+                             E  N+   M+      D++T  TV++G
Sbjct: 59  GRVM-----------------------------EAFNLQSQMVVRGISFDIVTCTTVMDG 89

Query: 289 FCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYS 348
             K+G+ +EA +V   ++     AP+ VT++ ++ G   +G+++ A  L+ Q M +    
Sbjct: 90  LFKVGKTKEAEEVFETILKLNL-APNCVTYSALLDGYCKLGKMELA-ELVLQKMEKEHVP 147

Query: 349 PGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRF 408
           P ++T+++++ G  +   + +A +V   M+   V+ ++  YAI+IDG  ++ + D A  F
Sbjct: 148 PNVITFSSIINGYAKKGMLSKAVDVLREMVQRNVMPNTIVYAILIDGYFKAGEQDVADDF 207

Query: 409 WDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACK 468
             ++        N ++  ++  L R G++ EA   + ++   G+ P+IV Y  +IDG  K
Sbjct: 208 CKEMKSRRLEESNVIFDILLNNLKRVGRMDEARSLIIDMYSKGIDPDIVNYASLIDGYFK 267

Query: 469 LSMKREAYQILREMRKNGLNPDAVTWRILDK 499
              +  A  I++EM++  +  D V +  L K
Sbjct: 268 EGNQLAALSIVQEMKEKNIRFDVVAYNALIK 298



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 80/164 (48%)

Query: 342 MPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ 401
           M   G  P +VT +++L G  R  ++ EA  +F  M  +G+  +  +YA +I+ L +S +
Sbjct: 1   MIMNGIMPDVVTCSSILYGFCRHGKLTEAAVLFREMYEMGLDPNHVSYATIINSLFKSGR 60

Query: 402 LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNV 461
           + EA      +V      D      ++ GL + GK  EA      ++   + PN V Y+ 
Sbjct: 61  VMEAFNLQSQMVVRGISFDIVTCTTVMDGLFKVGKTKEAEEVFETILKLNLAPNCVTYSA 120

Query: 462 VIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
           ++DG CKL     A  +L++M K  + P+ +T+  +   +  +G
Sbjct: 121 LLDGYCKLGKMELAELVLQKMEKEHVPPNVITFSSIINGYAKKG 164


>gi|357499681|ref|XP_003620129.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495144|gb|AES76347.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 543

 Score =  171 bits (433), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 111/486 (22%), Positives = 232/486 (47%), Gaps = 23/486 (4%)

Query: 28  NVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTR--------- 78
           N + Y+++   +    ++  A+ +F  +      P ++ ++ ++  +++++         
Sbjct: 40  NFIPYSSISTTFHNNNDVVDAFSLFSRLLRQNPTPPAIEFNKILGSLVKSKHYHTVLSLS 99

Query: 79  ---DVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKS 135
              + E  N ++F  ++   +      N   F  L+  LC +G +++     +++     
Sbjct: 100 QQMEFEGINPVLFH-FQHPHQLMGYHPNTITFTTLIKGLCLKGQIHQALLFHDNVVAMGF 158

Query: 136 VNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQ 195
             ++   G +I  LC+ G    A  ++  +    + P++V Y++I+ G+CK      A+ 
Sbjct: 159 QLDQVGYGTLIHGLCKVGETRAALDLLRRVDGNLVQPNVVMYSTIIDGMCKDKHVNDAFD 218

Query: 196 LLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALC 255
           L  E +  G  P+  TY  L+ G      L+ A  +   M+ +         NI +   C
Sbjct: 219 LYSEMVSKGISPNVVTYSALISGFFTVGQLKDAIDLFNKMILENIKPDVYTFNILVDGFC 278

Query: 256 LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA 315
                 E   V   M++   +P+V+T  ++++G+C +  + +A  +L  M + +   PD 
Sbjct: 279 KDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKEVNKAKSILYTM-SQRGVNPDI 337

Query: 316 VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN 375
            ++  +I G   + ++ EA+N L++ M  +   P +VTYN+++ GL +L ++  A ++ +
Sbjct: 338 QSYNILIDGFCKIKKVDEAMN-LFKEMHHKHIIPDVVTYNSLIDGLCKLGKISYALKLVD 396

Query: 376 CMLGIGVVADSTTYAIVIDGLCESNQLDEA----KRFWDDIVWPSNIHDNYVYAAMIKGL 431
            M   GV  D  TY+ ++D LC+++Q+D+A     +  D  + P    + Y Y  +I GL
Sbjct: 397 EMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQGIRP----NMYTYTILIDGL 452

Query: 432 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 491
           C+ G++ +A +   +L+  G    +  Y V+I G C   +  EA  +L +M+ N   PDA
Sbjct: 453 CKGGRLEDAHNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEALALLSKMKDNSCIPDA 512

Query: 492 VTWRIL 497
           VT+ I+
Sbjct: 513 VTYEII 518



 Score =  158 bits (399), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 106/408 (25%), Positives = 191/408 (46%), Gaps = 7/408 (1%)

Query: 24  GHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERA 83
           G+ PN +++TTLI G C  G++  A    D +   G   + + Y  L+ G+ +  +   A
Sbjct: 122 GYHPNTITFTTLIKGLCLKGQIHQALLFHDNVVAMGFQLDQVGYGTLIHGLCKVGETRAA 181

Query: 84  NVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACG 143
             L+     R  +   +  N   ++ ++D +C++ +VN+ F +  +M             
Sbjct: 182 LDLL-----RRVDGNLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYS 236

Query: 144 HMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQF 203
            +I      G+   A  +   M    + P + ++N +V G CK G       +    ++ 
Sbjct: 237 ALISGFFTVGQLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQ 296

Query: 204 GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTEL 263
           G  P+  TY  L++G C   ++ KA+ +L  M  +      +  NI +   C IK   E 
Sbjct: 297 GIKPNVVTYCSLMDGYCLVKEVNKAKSILYTMSQRGVNPDIQSYNILIDGFCKIKKVDEA 356

Query: 264 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF 323
           +N+   M      PDV+T N++I+G CK+G+I  ALK++++M   +   PD +T+++I+ 
Sbjct: 357 MNLFKEMHHKHIIPDVVTYNSLIDGLCKLGKISYALKLVDEM-HDRGVPPDIITYSSILD 415

Query: 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 383
            L    ++ +A+ LL ++  Q G  P + TY  ++ GL +  R+E+A  +F  +L  G  
Sbjct: 416 ALCKNHQVDKAIALLTKLKDQ-GIRPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVKGYN 474

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 431
               TY ++I G C     DEA      +   S I D   Y  +I+ L
Sbjct: 475 ITVNTYTVMIHGFCNKGLFDEALALLSKMKDNSCIPDAVTYEIIIRSL 522



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 109/375 (29%), Positives = 180/375 (48%), Gaps = 18/375 (4%)

Query: 6   GLSRVGEAHKLFFDMKSR--GHV--PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVL 61
           GL +VGE  +   D+  R  G++  PNVV Y+T+I G C+   ++ A+ ++ EM   G+ 
Sbjct: 171 GLCKVGET-RAALDLLRRVDGNLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGIS 229

Query: 62  PNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVN 121
           PN +TYS L+ G      ++ A      L+ +M   E++  +   F  LVD  C++G + 
Sbjct: 230 PNVVTYSALISGFFTVGQLKDA----IDLFNKMI-LENIKPDVYTFNILVDGFCKDGKMK 284

Query: 122 E---VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
           E   VF +   M QG   N    C  ++D  C     + A  ++Y M +RG+ P + SYN
Sbjct: 285 EGKTVFAMM--MKQGIKPNVVTYCS-LMDGYCLVKEVNKAKSILYTMSQRGVNPDIQSYN 341

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
            ++ G CK      A  L +E      +P   TY  L++GLC    +  A K++  M  +
Sbjct: 342 ILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDR 401

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
                    +  L ALC      + + +L  +     +P++ T   +I+G CK GR+E+A
Sbjct: 402 GVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQGIRPNMYTYTILIDGLCKGGRLEDA 461

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
             +  D++   +      T+T +I G  N G   EAL LL + M      P  VTY  ++
Sbjct: 462 HNIFEDLLVKGYNI-TVNTYTVMIHGFCNKGLFDEALALLSK-MKDNSCIPDAVTYEIII 519

Query: 359 RGLFRLRRVEEAKEV 373
           R LF     ++A+++
Sbjct: 520 RSLFDKDENDKAEKL 534



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 96/362 (26%), Positives = 156/362 (43%), Gaps = 76/362 (20%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIH----------------------- 37
           +D +C    V +A  L+ +M S+G  PNVV+Y+ LI                        
Sbjct: 204 IDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGQLKDAIDLFNKMILENI 263

Query: 38  ------------GYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANV 85
                       G+C+ G+M     VF  M   G+ PN +TY  L+ G    ++V +A  
Sbjct: 264 KPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKEVNKAKS 323

Query: 86  LMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHM 145
           +++ + +R    +  S N      L+D  C+   V+E   + ++M     + +      +
Sbjct: 324 ILYTMSQRGVNPDIQSYN-----ILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNSL 378

Query: 146 IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY 205
           ID LC+ G+   A ++V  M  RG+ P +++Y+SI+  LCK+    +A  LL +    G 
Sbjct: 379 IDGLCKLGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQGI 438

Query: 206 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 265
            P+ +TY +L++GLC    LE A  + + +L K         NI                
Sbjct: 439 RPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVKG-------YNI---------------- 475

Query: 266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 325
                        V T   +I+GFC  G  +EAL +L+ M     C PDAVT+  II  L
Sbjct: 476 ------------TVNTYTVMIHGFCNKGLFDEALALLSKMKDNS-CIPDAVTYEIIIRSL 522

Query: 326 LN 327
            +
Sbjct: 523 FD 524



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 113/231 (48%), Gaps = 5/231 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           MD  C +  V +A  + + M  RG  P++ SY  LI G+C+  ++D A  +F EM H  +
Sbjct: 309 MDGYCLVKEVNKAKSILYTMSQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHI 368

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P+ +TY+ L+ G+ +   +  A     KL + M  +  +  +   +++++D+LC+   V
Sbjct: 369 IPDVVTYNSLIDGLCKLGKISYA----LKLVDEM-HDRGVPPDIITYSSILDALCKNHQV 423

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           ++   +   +         +    +ID LC+ GR   A  +   +  +G   ++ +Y  +
Sbjct: 424 DKAIALLTKLKDQGIRPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVKGYNITVNTYTVM 483

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKV 231
           +HG C  G    A  LL +      +P   TY++++  L  + + +KA K+
Sbjct: 484 IHGFCNKGLFDEALALLSKMKDNSCIPDAVTYEIIIRSLFDKDENDKAEKL 534


>gi|32489921|emb|CAE05513.1| OSJNBa0038P21.6 [Oryza sativa Japonica Group]
          Length = 648

 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 120/505 (23%), Positives = 226/505 (44%), Gaps = 32/505 (6%)

Query: 13  AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVR 72
           A  +F  +   G  P+V SY TLI G+ + GE+D AY++F +M    V P+ +TY+ L+ 
Sbjct: 48  ALAVFGRLLRTGLGPDVCSYNTLIDGFSKEGEVDKAYELFYKMIEQSVSPDVVTYNSLID 107

Query: 73  GVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQ 132
           G+ +T+++ ++     ++ E+M +   +  NN  + +L+      G   E  R+ ++M  
Sbjct: 108 GLCKTKEMVKSE----RVLEQMVDA-GIRPNNKTYNSLIYGYSTAGMWKESVRVFKEMSS 162

Query: 133 GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMR 192
              +     C   I +LCR  R   A  +   M  +G  P+++SY++++HG    G    
Sbjct: 163 SGLIPCVVNCNSFIHALCRHNRIKEAKDIFDSMVLKGPKPNIISYSTLLHGYAAEGCFAN 222

Query: 193 AYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLR 252
              L+   +  G +P+   + +L+        ++KA  + + M +K  +  T      + 
Sbjct: 223 MNSLVNLMVSKGIVPNHRFFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVIS 282

Query: 253 ALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCA 312
           +LC I    + L+    M+     P       +I G C  G + +A +++++M+      
Sbjct: 283 SLCRIGRLDDALHKFNHMVDIGVPPSEAVYRCLIQGCCNHGELVKAKELISEMMNKDIPP 342

Query: 313 PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG------------ 360
           P    F++II  L   GR+ E  +++  +M Q G  P +VT+N+++ G            
Sbjct: 343 PGVKYFSSIINNLFKEGRVAEGKDIM-DLMVQTGQRPNVVTFNSLMEGYCLVGNMEEALH 401

Query: 361 --------------LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
                          +  RR   AK++F+ M+  G      TY +V+ GLC +N  DEA 
Sbjct: 402 YLMLWHQLALNRIVTYMARRTTAAKKMFHEMIESGTTVSIQTYGVVLGGLCRNNCTDEAN 461

Query: 407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466
              + +   +   D   +  +I  + + G+  EA      +   G+ P +  YN++I   
Sbjct: 462 MLLEKLFAMNVKFDIITFNIVISAMLKVGRRQEAKELFAAISTYGLVPTVHTYNLMISNL 521

Query: 467 CKLSMKREAYQILREMRKNGLNPDA 491
            K     EA  +   + K+G  PD+
Sbjct: 522 IKEESYEEADNLFISVEKSGRAPDS 546



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 135/534 (25%), Positives = 239/534 (44%), Gaps = 55/534 (10%)

Query: 6   GLSRVGE---AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           G S+ GE   A++LF+ M  +   P+VV+Y +LI G C+T EM  + +V ++M   G+ P
Sbjct: 73  GFSKEGEVDKAYELFYKMIEQSVSPDVVTYNSLIDGLCKTKEMVKSERVLEQMVDAGIRP 132

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWE----------------------RMKEEEDL 100
           N+ TY+ L+ G   T  + + +V +FK                         R+KE +D+
Sbjct: 133 NNKTYNSLIYG-YSTAGMWKESVRVFKEMSSSGLIPCVVNCNSFIHALCRHNRIKEAKDI 191

Query: 101 ---------SVNNAAFANLVDSLCREG-YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC 150
                      N  +++ L+     EG + N    +   + +G   N  F    +I++  
Sbjct: 192 FDSMVLKGPKPNIISYSTLLHGYAAEGCFANMNSLVNLMVSKGIVPNHRFF-NILINAYA 250

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
           R G    A  +   M+ +G+ P  V++ +++  LC+ G    A       +  G  PSE 
Sbjct: 251 RCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEA 310

Query: 211 TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALC--LIKNP--TELLNV 266
            Y+ L++G C   +L KA++++  M++ KD+    +   Y  ++   L K     E  ++
Sbjct: 311 VYRCLIQGCCNHGELVKAKELISEMMN-KDIPPPGV--KYFSSIINNLFKEGRVAEGKDI 367

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
           +  M+QT  +P+V+T N+++ G+C +G +EEAL  L  M+  +      VT+        
Sbjct: 368 MDLMVQTGQRPNVVTFNSLMEGYCLVGNMEEALHYL--MLWHQLALNRIVTY-------- 417

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
            + R   A   ++  M + G +  I TY  VL GL R    +EA  +   +  + V  D 
Sbjct: 418 -MARRTTAAKKMFHEMIESGTTVSIQTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDI 476

Query: 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE 446
            T+ IVI  + +  +  EAK  +  I     +   + Y  MI  L +     EA +    
Sbjct: 477 ITFNIVISAMLKVGRRQEAKELFAAISTYGLVPTVHTYNLMISNLIKEESYEEADNLFIS 536

Query: 447 LVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKL 500
           +  SG  P+    N ++    K +   +A   L  + +N L  +A T  +L  L
Sbjct: 537 VEKSGRAPDSRLLNHIVRMLLKKAEVAKASNYLSIIDENNLTLEASTISLLASL 590



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 87/332 (26%), Positives = 158/332 (47%), Gaps = 3/332 (0%)

Query: 167 KRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLE 226
           + GL P + SYN+++ G  K G   +AY+L  + I+    P   TY  L++GLC   ++ 
Sbjct: 57  RTGLGPDVCSYNTLIDGFSKEGEVDKAYELFYKMIEQSVSPDVVTYNSLIDGLCKTKEMV 116

Query: 227 KARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVI 286
           K+ +VL+ M+        +  N  +          E + V   M  +   P V+  N+ I
Sbjct: 117 KSERVLEQMVDAGIRPNNKTYNSLIYGYSTAGMWKESVRVFKEMSSSGLIPCVVNCNSFI 176

Query: 287 NGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
           +  C+  RI+EA  + + MV  K   P+ ++++T++ G    G     +N L  +M  +G
Sbjct: 177 HALCRHNRIKEAKDIFDSMVL-KGPKPNIISYSTLLHGYAAEGCFAN-MNSLVNLMVSKG 234

Query: 347 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
             P    +N ++    R   +++A  +F  M   G++ D+ T+A VI  LC   +LD+A 
Sbjct: 235 IVPNHRFFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDAL 294

Query: 407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCY-NVVIDG 465
             ++ +V         VY  +I+G C  G++ +A   + E+++  + P  V Y + +I+ 
Sbjct: 295 HKFNHMVDIGVPPSEAVYRCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINN 354

Query: 466 ACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
             K     E   I+  M + G  P+ VT+  L
Sbjct: 355 LFKEGRVAEGKDIMDLMVQTGQRPNVVTFNSL 386



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 105/417 (25%), Positives = 189/417 (45%), Gaps = 31/417 (7%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC  +R+ EA  +F  M  +G  PN++SY+TL+HGY   G       + + M   G++PN
Sbjct: 179 LCRHNRIKEAKDIFDSMVLKGPKPNIISYSTLLHGYAAEGCFANMNSLVNLMVSKGIVPN 238

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
              +++L+    R   +++A +    ++E M + + +  +   FA ++ SLCR G +++ 
Sbjct: 239 HRFFNILINAYARCGMMDKAML----IFEDM-QNKGMIPDTVTFATVISSLCRIGRLDDA 293

Query: 124 FRIAEDM-----PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY- 177
                 M     P  ++V   + C  +I   C  G    A  ++  M  + + P  V Y 
Sbjct: 294 LHKFNHMVDIGVPPSEAV---YRC--LIQGCCNHGELVKAKELISEMMNKDIPPPGVKYF 348

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
           +SI++ L K G       +++  +Q G  P+  T+  L+EG C   ++E+A   L +++ 
Sbjct: 349 SSIINNLFKEGRVAEGKDIMDLMVQTGQRPNVVTFNSLMEGYCLVGNMEEA---LHYLML 405

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
              +   RI     R     K       +   M+++     + T   V+ G C+    +E
Sbjct: 406 WHQLALNRIVTYMARRTTAAK------KMFHEMIESGTTVSIQTYGVVLGGLCRNNCTDE 459

Query: 298 ALKVLNDMVAG--KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN 355
           A  +L  + A   KF   D +TF  +I  +L VGR QEA   L+  +   G  P + TYN
Sbjct: 460 ANMLLEKLFAMNVKF---DIITFNIVISAMLKVGRRQEAKE-LFAAISTYGLVPTVHTYN 515

Query: 356 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI 412
            ++  L +    EEA  +F  +   G   DS     ++  L +  ++ +A  +   I
Sbjct: 516 LMISNLIKEESYEEADNLFISVEKSGRAPDSRLLNHIVRMLLKKAEVAKASNYLSII 572



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 85/347 (24%), Positives = 154/347 (44%), Gaps = 6/347 (1%)

Query: 148 SLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLP 207
           S C +G   G +     MR   L PS  + + I     +  G   A  +    ++ G  P
Sbjct: 7   SSCSNGWTDGHAP----MRLLMLPPSTPTTSLIDVLPAECTGPELALAVFGRLLRTGLGP 62

Query: 208 SEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVL 267
              +Y  L++G   E +++KA ++   M+ +         N  +  LC  K   +   VL
Sbjct: 63  DVCSYNTLIDGFSKEGEVDKAYELFYKMIEQSVSPDVVTYNSLIDGLCKTKEMVKSERVL 122

Query: 268 VFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLN 327
             M+    +P+  T N++I G+   G  +E+++V  +M +     P  V   + I  L  
Sbjct: 123 EQMVDAGIRPNNKTYNSLIYGYSTAGMWKESVRVFKEMSSSGLI-PCVVNCNSFIHALCR 181

Query: 328 VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADST 387
             RI+EA ++ +  M  +G  P I++Y+ +L G            + N M+  G+V +  
Sbjct: 182 HNRIKEAKDI-FDSMVLKGPKPNIISYSTLLHGYAAEGCFANMNSLVNLMVSKGIVPNHR 240

Query: 388 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYEL 447
            + I+I+       +D+A   ++D+     I D   +A +I  LCR G++ +A+H    +
Sbjct: 241 FFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHM 300

Query: 448 VDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
           VD GV P+   Y  +I G C      +A +++ EM    + P  V +
Sbjct: 301 VDIGVPPSEAVYRCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKY 347



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 81/159 (50%), Gaps = 2/159 (1%)

Query: 344 QRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLD 403
           + G  P + +YN ++ G  +   V++A E+F  M+   V  D  TY  +IDGLC++ ++ 
Sbjct: 57  RTGLGPDVCSYNTLIDGFSKEGEVDKAYELFYKMIEQSVSPDVVTYNSLIDGLCKTKEMV 116

Query: 404 EAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463
           +++R  + +V      +N  Y ++I G   +G   E+V    E+  SG+ P +V  N  I
Sbjct: 117 KSERVLEQMVDAGIRPNNKTYNSLIYGYSTAGMWKESVRVFKEMSSSGLIPCVVNCNSFI 176

Query: 464 DGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
              C+ +  +EA  I   M   G  P+ +++  L  LHG
Sbjct: 177 HALCRHNRIKEAKDIFDSMVLKGPKPNIISYSTL--LHG 213


>gi|255555533|ref|XP_002518803.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223542184|gb|EEF43728.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 775

 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 129/490 (26%), Positives = 230/490 (46%), Gaps = 43/490 (8%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           +C    +  A  LF  MK  G  P++V+Y +LI GY + G +D ++ +F+EM+  G  P+
Sbjct: 262 MCKEGDMVTAKSLFHQMKQMGLTPDIVTYNSLIDGYGKLGLLDESFCLFEEMKDVGCEPD 321

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY+ L+    +   + +A    F     MK    L  N   ++ L+D+LC+E  + + 
Sbjct: 322 VITYNALINCFCKYEQMPKA----FHFLHEMKNS-GLKPNVVTYSTLIDALCKEHMLQQA 376

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            +   DM +      EF    +ID+ C++G    A ++   M +  +  ++V+Y +++ G
Sbjct: 377 IKFLLDMRRVGLSPNEFTYTSLIDANCKAGYLSDALKLADEMLQVQVGFNVVTYTTLLDG 436

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LCK G  M A  L    I+ G  P+  TY  LV G      +E A ++L+ +  KK    
Sbjct: 437 LCKEGRMMEAEDLFRAMIKAGVTPNLKTYTALVHGHIKNKRVENALELLKEIKEKKI--- 493

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                                           +PD++   T+I G C   ++EE   V++
Sbjct: 494 --------------------------------KPDLLLYGTIIWGLCSQNKLEECEFVMS 521

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           +M A    A ++V +T  +      G+  EALNLL Q M   G    IVT+  ++ GL +
Sbjct: 522 EMKACGIRA-NSVIYTIRMDAYFKTGKTVEALNLL-QEMCDLGVEVTIVTFCVLIDGLCK 579

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTY-AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
              VEEA + F  M    +  ++      +IDGLC++N ++ AK+ +D++   + + D  
Sbjct: 580 KGLVEEAIDYFARMADFNLQPNNVAVCTALIDGLCKNNYIEAAKKLFDEMQDKNMVPDKI 639

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
            Y A+I G  +     EA++    + + G+  ++  Y  ++ G  + ++ ++A   L EM
Sbjct: 640 AYTALIDGNLKHKDFQEALNIRSRMSELGMELDLHAYTSLVWGLSQGNLVQQARMFLNEM 699

Query: 483 RKNGLNPDAV 492
              G+ PD +
Sbjct: 700 IGKGIVPDEI 709



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 115/442 (26%), Positives = 212/442 (47%), Gaps = 6/442 (1%)

Query: 7   LSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLT 66
           L  + E+  LF +MK  G  P+V++Y  LI+ +C+  +M  A+    EM++ G+ PN +T
Sbjct: 300 LGLLDESFCLFEEMKDVGCEPDVITYNALINCFCKYEQMPKAFHFLHEMKNSGLKPNVVT 359

Query: 67  YSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRI 126
           YS L+  + +   +++A   +  +         LS N   + +L+D+ C+ GY+++  ++
Sbjct: 360 YSTLIDALCKEHMLQQAIKFLLDM-----RRVGLSPNEFTYTSLIDANCKAGYLSDALKL 414

Query: 127 AEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK 186
           A++M Q +          ++D LC+ GR   A  +   M K G+TP+L +Y ++VHG  K
Sbjct: 415 ADEMLQVQVGFNVVTYTTLLDGLCKEGRMMEAEDLFRAMIKAGVTPNLKTYTALVHGHIK 474

Query: 187 HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRI 246
           +     A +LL+E  +    P    Y  ++ GLC ++ LE+   V+  M +      + I
Sbjct: 475 NKRVENALELLKEIKEKKIKPDLLLYGTIIWGLCSQNKLEECEFVMSEMKACGIRANSVI 534

Query: 247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV 306
             I + A        E LN+L  M     +  ++T   +I+G CK G +EEA+     M 
Sbjct: 535 YTIRMDAYFKTGKTVEALNLLQEMCDLGVEVTIVTFCVLIDGLCKKGLVEEAIDYFARMA 594

Query: 307 AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 366
                  +    T +I GL     I EA   L+  M  +   P  + Y A++ G  + + 
Sbjct: 595 DFNLQPNNVAVCTALIDGLCKNNYI-EAAKKLFDEMQDKNMVPDKIAYTALIDGNLKHKD 653

Query: 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAA 426
            +EA  + + M  +G+  D   Y  ++ GL + N + +A+ F ++++    + D  +   
Sbjct: 654 FQEALNIRSRMSELGMELDLHAYTSLVWGLSQGNLVQQARMFLNEMIGKGIVPDEILCIR 713

Query: 427 MIKGLCRSGKIHEAVHFLYELV 448
           +++     G I EA+    EL+
Sbjct: 714 LLRKYYELGSIDEAIELHDELL 735



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 122/488 (25%), Positives = 224/488 (45%), Gaps = 14/488 (2%)

Query: 7   LSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLT 66
           L  + EA + F  M      P   S    ++   +TG+ D++ K F +M   G+  +  T
Sbjct: 195 LGMLEEAGQCFSRMTRFRVFPKARSCNAFLYRLAKTGKGDLSNKFFRDMVGAGIAQSVFT 254

Query: 67  YSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRI 126
           Y++++  + +  D+  A      L+ +MK +  L+ +   + +L+D   + G ++E F +
Sbjct: 255 YNIMIGYMCKEGDMVTAK----SLFHQMK-QMGLTPDIVTYNSLIDGYGKLGLLDESFCL 309

Query: 127 AEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK 186
            E+M       +      +I+  C+  +   A   ++ M+  GL P++V+Y++++  LCK
Sbjct: 310 FEEMKDVGCEPDVITYNALINCFCKYEQMPKAFHFLHEMKNSGLKPNVVTYSTLIDALCK 369

Query: 187 HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRI 246
                +A + L +  + G  P+E TY  L++  C    L  A K+   ML  +       
Sbjct: 370 EHMLQQAIKFLLDMRRVGLSPNEFTYTSLIDANCKAGYLSDALKLADEMLQVQVGFNVVT 429

Query: 247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV 306
               L  LC      E  ++   M++    P++ T   +++G  K  R+E AL++L ++ 
Sbjct: 430 YTTLLDGLCKEGRMMEAEDLFRAMIKAGVTPNLKTYTALVHGHIKNKRVENALELLKEIK 489

Query: 307 AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 366
             K   PD + + TII+GL +  +++E    +   M   G     V Y   +   F+  +
Sbjct: 490 EKKI-KPDLLLYGTIIWGLCSQNKLEEC-EFVMSEMKACGIRANSVIYTIRMDAYFKTGK 547

Query: 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA----KRFWDDIVWPSNIHDNY 422
             EA  +   M  +GV     T+ ++IDGLC+   ++EA     R  D  + P+N+    
Sbjct: 548 TVEALNLLQEMCDLGVEVTIVTFCVLIDGLCKKGLVEEAIDYFARMADFNLQPNNVA--- 604

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
           V  A+I GLC++  I  A     E+ D  + P+ + Y  +IDG  K    +EA  I   M
Sbjct: 605 VCTALIDGLCKNNYIEAAKKLFDEMQDKNMVPDKIAYTALIDGNLKHKDFQEALNIRSRM 664

Query: 483 RKNGLNPD 490
            + G+  D
Sbjct: 665 SELGMELD 672



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 113/425 (26%), Positives = 189/425 (44%), Gaps = 44/425 (10%)

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           N+ FR   DM         F    MI  +C+ G    A  + + M++ GLTP +V+YNS+
Sbjct: 237 NKFFR---DMVGAGIAQSVFTYNIMIGYMCKEGDMVTAKSLFHQMKQMGLTPDIVTYNSL 293

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G  K G    ++ L EE    G  P   TY  L+   C    + KA   L  M +   
Sbjct: 294 IDGYGKLGLLDESFCLFEEMKDVGCEPDVITYNALINCFCKYEQMPKAFHFLHEMKNSGL 353

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                  +  + ALC      + +  L+ M +    P+  T  ++I+  CK G + +ALK
Sbjct: 354 KPNVVTYSTLIDALCKEHMLQQAIKFLLDMRRVGLSPNEFTYTSLIDANCKAGYLSDALK 413

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           + ++M+  +    + VT+TT++ GL   GR+ EA +L ++ M + G +P + TY A++ G
Sbjct: 414 LADEMLQVQ-VGFNVVTYTTLLDGLCKEGRMMEAEDL-FRAMIKAGVTPNLKTYTALVHG 471

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDD-----IVWP 415
             + +RVE A E+   +    +  D   Y  +I GLC  N+L+E +    +     I   
Sbjct: 472 HIKNKRVENALELLKEIKEKKIKPDLLLYGTIIWGLCSQNKLEECEFVMSEMKACGIRAN 531

Query: 416 SNIH----DNY--------------------------VYAAMIKGLCRSGKIHEAVHFLY 445
           S I+    D Y                           +  +I GLC+ G + EA+ +  
Sbjct: 532 SVIYTIRMDAYFKTGKTVEALNLLQEMCDLGVEVTIVTFCVLIDGLCKKGLVEEAIDYFA 591

Query: 446 ELVDSGVTPN-IVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGN- 503
            + D  + PN +     +IDG CK +    A ++  EM+   + PD + +  L  + GN 
Sbjct: 592 RMADFNLQPNNVAVCTALIDGLCKNNYIEAAKKLFDEMQDKNMVPDKIAYTAL--IDGNL 649

Query: 504 RGNDF 508
           +  DF
Sbjct: 650 KHKDF 654



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 102/414 (24%), Positives = 176/414 (42%), Gaps = 43/414 (10%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    + +A K   DM+  G  PN  +YT+LI   C+ G +  A K+ DEM    V
Sbjct: 364 IDALCKEHMLQQAIKFLLDMRRVGLSPNEFTYTSLIDANCKAGYLSDALKLADEMLQVQV 423

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             N +TY+ L+ G+ +   +  A  L      R   +  ++ N   +  LV    +   V
Sbjct: 424 GFNVVTYTTLLDGLCKEGRMMEAEDLF-----RAMIKAGVTPNLKTYTALVHGHIKNKRV 478

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                + +++ + K   +    G +I  LC   +      V+  M+  G+  + V Y   
Sbjct: 479 ENALELLKEIKEKKIKPDLLLYGTIIWGLCSQNKLEECEFVMSEMKACGIRANSVIYTIR 538

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +    K G  + A  LL+E    G   +  T+ VL++GLC +  +E+A            
Sbjct: 539 MDAYFKTGKTVEALNLLQEMCDLGVEVTIVTFCVLIDGLCKKGLVEEA------------ 586

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNT-VINGFCKMGRIEEAL 299
                                  ++    M     QP+ + + T +I+G CK   IE A 
Sbjct: 587 -----------------------IDYFARMADFNLQPNNVAVCTALIDGLCKNNYIEAAK 623

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           K+ ++M   K   PD + +T +I G L     QEALN+  + M + G    +  Y +++ 
Sbjct: 624 KLFDEM-QDKNMVPDKIAYTALIDGNLKHKDFQEALNIRSR-MSELGMELDLHAYTSLVW 681

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413
           GL +   V++A+   N M+G G+V D      ++    E   +DEA    D+++
Sbjct: 682 GLSQGNLVQQARMFLNEMIGKGIVPDEILCIRLLRKYYELGSIDEAIELHDELL 735



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 87/187 (46%), Gaps = 1/187 (0%)

Query: 311 CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEA 370
           C P    F  +    + +G ++EA     ++   R + P   + NA L  L +  + + +
Sbjct: 178 CVPGFGVFDALFSVFIELGMLEEAGQCFSRMTRFRVF-PKARSCNAFLYRLAKTGKGDLS 236

Query: 371 KEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKG 430
            + F  M+G G+     TY I+I  +C+   +  AK  +  +       D   Y ++I G
Sbjct: 237 NKFFRDMVGAGIAQSVFTYNIMIGYMCKEGDMVTAKSLFHQMKQMGLTPDIVTYNSLIDG 296

Query: 431 LCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD 490
             + G + E+     E+ D G  P+++ YN +I+  CK     +A+  L EM+ +GL P+
Sbjct: 297 YGKLGLLDESFCLFEEMKDVGCEPDVITYNALINCFCKYEQMPKAFHFLHEMKNSGLKPN 356

Query: 491 AVTWRIL 497
            VT+  L
Sbjct: 357 VVTYSTL 363



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 69/160 (43%), Gaps = 16/160 (10%)

Query: 355 NAVLRGLFRLRRVEEAKEVFN--------CMLGIGVVADSTTYAIVIDGLCESNQ-LDEA 405
           N  L+ L   RR+    +VF         C+ G GV     +  I +  L E+ Q     
Sbjct: 149 NFFLKELISSRRILPGFDVFEVLWSTRNVCVPGFGVFDALFSVFIELGMLEEAGQCFSRM 208

Query: 406 KRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDG 465
            RF    V+P     N    A +  L ++GK   +  F  ++V +G+  ++  YN++I  
Sbjct: 209 TRFR---VFPKARSCN----AFLYRLAKTGKGDLSNKFFRDMVGAGIAQSVFTYNIMIGY 261

Query: 466 ACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
            CK      A  +  +M++ GL PD VT+  L   +G  G
Sbjct: 262 MCKEGDMVTAKSLFHQMKQMGLTPDIVTYNSLIDGYGKLG 301


>gi|15236546|ref|NP_194913.1| proton gradient regulation 3 [Arabidopsis thaliana]
 gi|75213543|sp|Q9SZ52.1|PP344_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g31850,
            chloroplastic; AltName: Full=Protein PROTON GRADIENT
            REGULATION 3; Flags: Precursor
 gi|4584524|emb|CAB40755.1| putative protein [Arabidopsis thaliana]
 gi|7270088|emb|CAB79903.1| putative protein [Arabidopsis thaliana]
 gi|332660567|gb|AEE85967.1| proton gradient regulation 3 [Arabidopsis thaliana]
          Length = 1112

 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 136/535 (25%), Positives = 244/535 (45%), Gaps = 55/535 (10%)

Query: 8    SRVGE---AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
            S+VGE   A KL  +M   G  P+V+   +LI+   +   +D A+K+F  M+   + P  
Sbjct: 514  SKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTV 573

Query: 65   LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
            +TY+ L+ G+ +   ++ A     +L+E M ++     N   F  L D LC+   V    
Sbjct: 574  VTYNTLLAGLGKNGKIQEA----IELFEGMVQK-GCPPNTITFNTLFDCLCKNDEVTLAL 628

Query: 125  RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
            ++   M     V + F    +I  L ++G+   A    + M+K  + P  V+  +++ G+
Sbjct: 629  KMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKKL-VYPDFVTLCTLLPGV 687

Query: 185  CKHGGCMRAYQLL-------------------------EEGIQFGYLPSEHTYKVLVEGL 219
             K      AY+++                         E GI      SE   +++  G+
Sbjct: 688  VKASLIEDAYKIITNFLYNCADQPANLFWEDLIGSILAEAGIDNAVSFSE---RLVANGI 744

Query: 220  CGESD---------------LEKARKVLQFMLSKKDVD-RTRICNIYLRALCLIKNPTEL 263
            C + D               +  AR + +       V  +    N+ +  L         
Sbjct: 745  CRDGDSILVPIIRYSCKHNNVSGARTLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIA 804

Query: 264  LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF 323
             +V + +  T C PDV T N +++ + K G+I+E  ++  +M   + C  + +T   +I 
Sbjct: 805  QDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHE-CEANTITHNIVIS 863

Query: 324  GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 383
            GL+  G + +AL+L Y +M  R +SP   TY  ++ GL +  R+ EAK++F  ML  G  
Sbjct: 864  GLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCR 923

Query: 384  ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
             +   Y I+I+G  ++ + D A   +  +V      D   Y+ ++  LC  G++ E +H+
Sbjct: 924  PNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHY 983

Query: 444  LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN-GLNPDAVTWRIL 497
              EL +SG+ P++VCYN++I+G  K     EA  +  EM+ + G+ PD  T+  L
Sbjct: 984  FKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSL 1038



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 122/490 (24%), Positives = 226/490 (46%), Gaps = 44/490 (8%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           ++ EA+++   M   G  P+VV+YT LI   C   ++D A +VF++M+     P+ +TY 
Sbjct: 273 KINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYI 332

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
            L+      RD++       + W  M+++  +  +   F  LVD+LC+ G   E F   +
Sbjct: 333 TLLDRFSDNRDLDSVK----QFWSEMEKDGHVP-DVVTFTILVDALCKAGNFGEAFDTLD 387

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
                                              VMR +G+ P+L +YN+++ GL +  
Sbjct: 388 -----------------------------------VMRDQGILPNLHTYNTLICGLLRVH 412

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
               A +L       G  P+ +TY V ++      D   A +  + M +K        CN
Sbjct: 413 RLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACN 472

Query: 249 IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 308
             L +L       E   +   +      PD +T N ++  + K+G I+EA+K+L++M+  
Sbjct: 473 ASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMEN 532

Query: 309 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE 368
             C PD +   ++I  L    R+ EA  +  + M +    P +VTYN +L GL +  +++
Sbjct: 533 G-CEPDVIVVNSLINTLYKADRVDEAWKMFMR-MKEMKLKPTVVTYNTLLAGLGKNGKIQ 590

Query: 369 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI 428
           EA E+F  M+  G   ++ T+  + D LC+++++  A +    ++    + D + Y  +I
Sbjct: 591 EAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTII 650

Query: 429 KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLN 488
            GL ++G++ EA+ F +++    V P+ V    ++ G  K S+  +AY+I+     N  +
Sbjct: 651 FGLVKNGQVKEAMCFFHQM-KKLVYPDFVTLCTLLPGVVKASLIEDAYKIITNFLYNCAD 709

Query: 489 -PDAVTWRIL 497
            P  + W  L
Sbjct: 710 QPANLFWEDL 719



 Score =  158 bits (399), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 118/478 (24%), Positives = 219/478 (45%), Gaps = 43/478 (8%)

Query: 16  LFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVL 75
           L  +M++ G  PNV ++T  I    R G+++ AY++   M   G  P+ +TY+VL+  + 
Sbjct: 245 LLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALC 304

Query: 76  RTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKS 135
             R ++ A     +++E+MK       +   +  L+D       ++ V +   +M +   
Sbjct: 305 TARKLDCAK----EVFEKMKTGRH-KPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGH 359

Query: 136 VNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQ 195
           V +      ++D+LC++G    A   + VMR +G+ P+L +YN+++ GL +      A +
Sbjct: 360 VPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALE 419

Query: 196 LLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALC 255
           L       G  P+ +TY V ++      D   A +  + M +K        CN  L +L 
Sbjct: 420 LFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLA 479

Query: 256 LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA 315
                 E   +   +      PD +T N ++  + K+G I+EA+K+L++M+    C PD 
Sbjct: 480 KAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENG-CEPDV 538

Query: 316 VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN 375
           +   ++I  L    R+ EA  +  + M +    P +VTYN +L GL +  +++EA E+F 
Sbjct: 539 IVVNSLINTLYKADRVDEAWKMFMR-MKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFE 597

Query: 376 CMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG 435
            M+  G   ++ T+  + D  C                                 LC++ 
Sbjct: 598 GMVQKGCPPNTITFNTLFD--C---------------------------------LCKND 622

Query: 436 KIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVT 493
           ++  A+  L++++D G  P++  YN +I G  K    +EA     +M+K  + PD VT
Sbjct: 623 EVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKKL-VYPDFVT 679



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 137/545 (25%), Positives = 229/545 (42%), Gaps = 50/545 (9%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGY--------------------- 39
           +D LC   ++  A ++F  MK+  H P+ V+Y TL+  +                     
Sbjct: 300 IDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGH 359

Query: 40  --------------CRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANV 85
                         C+ G    A+   D MR  G+LPN  TY+ L+ G+LR   ++ A  
Sbjct: 360 VPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDA-- 417

Query: 86  LMFKLWERMKEEEDLSVNNAAFANLV--DSLCREGYVNEVFRIAEDMPQGKSVNEEFACG 143
              +L+  M   E L V   A+  +V  D   + G         E M          AC 
Sbjct: 418 --LELFGNM---ESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACN 472

Query: 144 HMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQF 203
             + SL ++GR+  A ++ Y ++  GL P  V+YN ++    K G    A +LL E ++ 
Sbjct: 473 ASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMEN 532

Query: 204 GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTEL 263
           G  P       L+  L     +++A K+   M   K        N  L  L       E 
Sbjct: 533 GCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEA 592

Query: 264 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF 323
           + +   M+Q  C P+ IT NT+ +  CK   +  ALK+L  M+    C PD  T+ TIIF
Sbjct: 593 IELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMM-DMGCVPDVFTYNTIIF 651

Query: 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEA-KEVFNCMLGIGV 382
           GL+  G+++EA+   +Q+  ++   P  VT   +L G+ +   +E+A K + N +     
Sbjct: 652 GLVKNGQVKEAMCFFHQM--KKLVYPDFVTLCTLLPGVVKASLIEDAYKIITNFLYNCAD 709

Query: 383 VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD-NYVYAAMIKGLCRSGKIHEAV 441
              +  +  +I  +     +D A  F + +V      D + +   +I+  C+   +  A 
Sbjct: 710 QPANLFWEDLIGSILAEAGIDNAVSFSERLVANGICRDGDSILVPIIRYSCKHNNVSGAR 769

Query: 442 HFLYELV-DSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKL 500
               +   D GV P +  YN++I G  +  M   A  +  +++  G  PD  T+  L   
Sbjct: 770 TLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDA 829

Query: 501 HGNRG 505
           +G  G
Sbjct: 830 YGKSG 834



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 129/533 (24%), Positives = 223/533 (41%), Gaps = 75/533 (14%)

Query: 1    MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
             D LC    V  A K+ F M   G VP+V +Y T+I G  + G++  A   F +M+   V
Sbjct: 615  FDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKKL-V 673

Query: 61   LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             P+ +T   L+ GV++   +E A  ++        ++      N  + +L+ S+  E  +
Sbjct: 674  YPDFVTLCTLLPGVVKASLIEDAYKIITNFLYNCADQP----ANLFWEDLIGSILAEAGI 729

Query: 121  NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +     +E +              + + +CR G +              L P       I
Sbjct: 730  DNAVSFSERL--------------VANGICRDGDSI-------------LVP-------I 755

Query: 181  VHGLCKHGGCMRAYQLLEEGIQ-FGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
            +   CKH     A  L E+  +  G  P   TY +L+ GL     +E A+ V   + S  
Sbjct: 756  IRYSCKHNNVSGARTLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTG 815

Query: 240  DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
             +      N  L A        EL  +   M   +C+ + IT N VI+G  K G +++AL
Sbjct: 816  CIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDAL 875

Query: 300  KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNL---------------------- 337
             +  D+++ +  +P A T+  +I GL   GR+ EA  L                      
Sbjct: 876  DLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILING 935

Query: 338  ------------LYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 385
                        L++ M + G  P + TY+ ++  L  + RV+E    F  +   G+  D
Sbjct: 936  FGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPD 995

Query: 386  STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH-DNYVYAAMIKGLCRSGKIHEAVHFL 444
               Y ++I+GL +S++L+EA   ++++     I  D Y Y ++I  L  +G + EA    
Sbjct: 996  VVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIY 1055

Query: 445  YELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
             E+  +G+ PN+  +N +I G         AY + + M   G +P+  T+  L
Sbjct: 1056 NEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTYEQL 1108



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 116/478 (24%), Positives = 201/478 (42%), Gaps = 42/478 (8%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M+  G V N  SY  LIH   ++     A +V+  M   G  P+  TYS L+ G+ + RD
Sbjct: 179 MREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRD 238

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
           ++    L+ ++     E   L  N   F   +  L R G +NE +               
Sbjct: 239 IDSVMGLLKEM-----ETLGLKPNVYTFTICIRVLGRAGKINEAYE-------------- 279

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
                                ++  M   G  P +V+Y  ++  LC       A ++ E+
Sbjct: 280 ---------------------ILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEK 318

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
                + P   TY  L++      DL+  ++    M     V       I + ALC   N
Sbjct: 319 MKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGN 378

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
             E  + L  M      P++ T NT+I G  ++ R+++AL++  +M +     P A T+ 
Sbjct: 379 FGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLG-VKPTAYTYI 437

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
             I      G    AL   ++ M  +G +P IV  NA L  L +  R  EAK++F  +  
Sbjct: 438 VFIDYYGKSGDSVSALET-FEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKD 496

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
           IG+V DS TY +++    +  ++DEA +   +++      D  V  ++I  L ++ ++ E
Sbjct: 497 IGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDE 556

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           A      + +  + P +V YN ++ G  K    +EA ++   M + G  P+ +T+  L
Sbjct: 557 AWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTL 614



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 97/364 (26%), Positives = 163/364 (44%), Gaps = 8/364 (2%)

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
           +  SL   G    A   +  MR+ G   +  SYN ++H L K   C  A ++    I  G
Sbjct: 159 IFKSLSVKGGLKQAPYALRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEG 218

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS---KKDVDRTRICNIYLRALCLIKNPT 261
           + PS  TY  L+ GL    D++    +L+ M +   K +V    IC   +R L       
Sbjct: 219 FRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTIC---IRVLGRAGKIN 275

Query: 262 ELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTI 321
           E   +L  M    C PDV+T   +I+  C   +++ A +V   M  G+   PD VT+ T+
Sbjct: 276 EAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRH-KPDRVTYITL 334

Query: 322 IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG 381
           +    +  R  +++   +  M + G+ P +VT+  ++  L +     EA +  + M   G
Sbjct: 335 L-DRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQG 393

Query: 382 VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAV 441
           ++ +  TY  +I GL   ++LD+A   + ++         Y Y   I    +SG    A+
Sbjct: 394 ILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSAL 453

Query: 442 HFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLH 501
               ++   G+ PNIV  N  +    K    REA QI   ++  GL PD+VT+ ++ K +
Sbjct: 454 ETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCY 513

Query: 502 GNRG 505
              G
Sbjct: 514 SKVG 517



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 90/366 (24%), Positives = 162/366 (44%), Gaps = 37/366 (10%)

Query: 141 ACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEG 200
            C +M+++L   G+    + V  +M+KR +     +Y +I   L   GG  +A   L + 
Sbjct: 120 TCNYMLEALRVDGKLEEMAYVFDLMQKRIIKRDTNTYLTIFKSLSVKGGLKQAPYALRKM 179

Query: 201 IQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNP 260
            +FG++ + ++Y  L+  L                       ++R C             
Sbjct: 180 REFGFVLNAYSYNGLIHLLL----------------------KSRFC------------- 204

Query: 261 TELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTT 320
           TE + V   M+    +P + T ++++ G  K   I+  + +L +M       P+  TFT 
Sbjct: 205 TEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGL-KPNVYTFTI 263

Query: 321 IIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI 380
            I  L   G+I EA  +L + M   G  P +VTY  ++  L   R+++ AKEVF  M   
Sbjct: 264 CIRVLGRAGKINEAYEILKR-MDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTG 322

Query: 381 GVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEA 440
               D  TY  ++D   ++  LD  K+FW ++    ++ D   +  ++  LC++G   EA
Sbjct: 323 RHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEA 382

Query: 441 VHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKL 500
              L  + D G+ PN+  YN +I G  ++    +A ++   M   G+ P A T+ +    
Sbjct: 383 FDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDY 442

Query: 501 HGNRGN 506
           +G  G+
Sbjct: 443 YGKSGD 448


>gi|147789724|emb|CAN67401.1| hypothetical protein VITISV_025967 [Vitis vinifera]
          Length = 592

 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 117/463 (25%), Positives = 216/463 (46%), Gaps = 8/463 (1%)

Query: 35  LIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERM 94
           L++  C+ G+ + +    + + + G  P+ +  + L++G    +++E+A+ +M  L    
Sbjct: 84  LLNRSCKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVMEILESHT 143

Query: 95  KEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGR 154
             E D+   NA    ++   C+   +    ++   M     + +      MI SLC   +
Sbjct: 144 --EPDVFAYNA----VISGFCKVNQIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRK 197

Query: 155 NHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKV 214
              A  V+  +      P++++Y  ++      GG   A +LLEE +  G LP  +TY  
Sbjct: 198 LGLALTVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNA 257

Query: 215 LVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQ 274
           ++ G+C E  +E+A +++  + SK         NI LRA        E   ++  M    
Sbjct: 258 IIRGMCKEGMVERAAELITSLTSKGCEPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRG 317

Query: 275 CQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEA 334
           C+P+ +T + +I+  C+ GRI+EA+ VL  M+  +   PD  ++  +I  L   GR+  A
Sbjct: 318 CEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKEL-TPDTYSYDPLISALCKEGRLDLA 376

Query: 335 LNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVID 394
           + ++   M   G  P IV YN +L  L +     +A E+FN + G+G   + ++Y  +I 
Sbjct: 377 IGIM-DYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMIS 435

Query: 395 GLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTP 454
            L        A      ++      D   Y ++I  LCR G + EA+  L ++  SG  P
Sbjct: 436 ALWSCGDRSRALGMVPAMISKGIDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRP 495

Query: 455 NIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            ++ YN+V+ G CK+    +A  +  EM + G  P+  T+ +L
Sbjct: 496 TVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETTYILL 538



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 103/426 (24%), Positives = 207/426 (48%), Gaps = 7/426 (1%)

Query: 27  PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVL 86
           P+V +Y  +I G+C+  +++ A +V + M+  G LP+ +TY++++  +   R +  A  +
Sbjct: 145 PDVFAYNAVISGFCKVNQIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALTV 204

Query: 87  MFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMI 146
           + +L       ++       +  L+++   EG +NE  ++ E+M     + + +    +I
Sbjct: 205 LDQLL-----LDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAII 259

Query: 147 DSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL 206
             +C+ G    A+ ++  +  +G  P ++SYN ++      G      +L+ E    G  
Sbjct: 260 RGMCKEGMVERAAELITSLTSKGCEPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCE 319

Query: 207 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 266
           P++ TY +L+  LC    +++A  VL+ M+ K+    T   +  + ALC        + +
Sbjct: 320 PNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGI 379

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
           + +M+   C PD++  NT++   CK G   +AL++ N +  G  C P+  ++ T+I  L 
Sbjct: 380 MDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKL-RGMGCPPNVSSYNTMISALW 438

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
           + G    AL ++   M  +G  P  +TYN+++  L R   VEEA  + + M   G     
Sbjct: 439 SCGDRSRALGMV-PAMISKGIDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTV 497

Query: 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE 446
            +Y IV+ GLC+  ++D+A   + +++      +   Y  +I+G+  +G   EA+     
Sbjct: 498 ISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIEGIGFAGWRTEAMELANS 557

Query: 447 LVDSGV 452
           L    V
Sbjct: 558 LFSRDV 563



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 103/396 (26%), Positives = 194/396 (48%), Gaps = 13/396 (3%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C ++++  A ++   MK+RG +P++V+Y  +I   C   ++ +A  V D++     +P 
Sbjct: 157 FCKVNQIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALTVLDQLLLDNCMPT 216

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEE---EDLSVNNAAFANLVDSLCREGYV 120
            +TY++L+   +    +  A     KL E M       D+   NA    ++  +C+EG V
Sbjct: 217 VITYTILIEATIVEGGINEA----MKLLEEMLARGLLPDMYTYNA----IIRGMCKEGMV 268

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                +   +       +  +   ++ +    G+     ++V  M  RG  P+ V+Y+ +
Sbjct: 269 ERAAELITSLTSKGCEPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSIL 328

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +  LC+ G    A  +L+  I+    P  ++Y  L+  LC E  L+ A  ++ +M+S   
Sbjct: 329 ISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGC 388

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           +      N  L ALC   N  + L +   +    C P+V + NT+I+     G    AL 
Sbjct: 389 LPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALG 448

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           ++  M++ K   PD +T+ ++I  L   G ++EA+ LL   M Q G+ P +++YN VL G
Sbjct: 449 MVPAMIS-KGIDPDEITYNSLISCLCRDGLVEEAIGLLDD-MEQSGFRPTVISYNIVLLG 506

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 396
           L ++RR+++A  +F  M+  G   + TTY ++I+G+
Sbjct: 507 LCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIEGI 542



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 102/385 (26%), Positives = 182/385 (47%), Gaps = 7/385 (1%)

Query: 3   QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
            LC   ++G A  +   +     +P V++YT LI      G ++ A K+ +EM   G+LP
Sbjct: 191 SLCNRRKLGLALTVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLP 250

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           +  TY+ ++RG+ +   VERA  L+  L  +  E + +S N      L+ +   +G  +E
Sbjct: 251 DMYTYNAIIRGMCKEGMVERAAELITSLTSKGCEPDVISYN-----ILLRAFLNQGKWDE 305

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
             ++  +M        +     +I SLCR GR   A  V+ VM ++ LTP   SY+ ++ 
Sbjct: 306 GEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLIS 365

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
            LCK G    A  +++  I  G LP    Y  ++  LC   +  +A ++   +       
Sbjct: 366 ALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPP 425

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
                N  + AL    + +  L ++  M+     PD IT N++I+  C+ G +EEA+ +L
Sbjct: 426 NVSSYNTMISALWSCGDRSRALGMVPAMISKGIDPDEITYNSLISCLCRDGLVEEAIGLL 485

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
           +DM    F  P  +++  ++ GL  V RI +A+ +  + M ++G  P   TY  ++ G+ 
Sbjct: 486 DDMEQSGF-RPTVISYNIVLLGLCKVRRIDDAIGMFAE-MIEKGCRPNETTYILLIEGIG 543

Query: 363 RLRRVEEAKEVFNCMLGIGVVADST 387
                 EA E+ N +    V++  +
Sbjct: 544 FAGWRTEAMELANSLFSRDVISQDS 568



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/325 (24%), Positives = 153/325 (47%), Gaps = 5/325 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           +C    V  A +L   + S+G  P+V+SY  L+  +   G+ D   K+  EM   G  PN
Sbjct: 262 MCKEGMVERAAELITSLTSKGCEPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPN 321

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TYS+L+  + R   ++ A  ++     ++  E++L+ +  ++  L+ +LC+EG ++  
Sbjct: 322 KVTYSILISSLCRFGRIDEAISVL-----KVMIEKELTPDTYSYDPLISALCKEGRLDLA 376

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             I + M     + +      ++ +LC++G  + A  +   +R  G  P++ SYN+++  
Sbjct: 377 IGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISA 436

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           L   G   RA  ++   I  G  P E TY  L+  LC +  +E+A  +L  M        
Sbjct: 437 LWSCGDRSRALGMVPAMISKGIDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPT 496

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               NI L  LC ++   + + +   M++  C+P+  T   +I G    G   EA+++ N
Sbjct: 497 VISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIEGIGFAGWRTEAMELAN 556

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNV 328
            + +    + D+       F +L+V
Sbjct: 557 SLFSRDVISQDSFKRLNKTFPMLDV 581



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 111/224 (49%), Gaps = 3/224 (1%)

Query: 282 LNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQV 341
           L  ++N  CK G+  E+L  L  +V   +  PD +  T +I G  N   I++A  ++  +
Sbjct: 81  LMKLLNRSCKAGKFNESLYFLECLVNKGY-TPDVILCTKLIKGFFNFKNIEKASRVMEIL 139

Query: 342 MPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ 401
             +    P +  YNAV+ G  ++ ++E A +V N M   G + D  TY I+I  LC   +
Sbjct: 140 --ESHTEPDVFAYNAVISGFCKVNQIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRK 197

Query: 402 LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNV 461
           L  A    D ++  + +     Y  +I+     G I+EA+  L E++  G+ P++  YN 
Sbjct: 198 LGLALTVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNA 257

Query: 462 VIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
           +I G CK  M   A +++  +   G  PD +++ IL +   N+G
Sbjct: 258 IIRGMCKEGMVERAAELITSLTSKGCEPDVISYNILLRAFLNQG 301



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 99/219 (45%), Gaps = 5/219 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +  LC   R+ EA  +   M  +   P+  SY  LI   C+ G +D+A  + D M   G 
Sbjct: 329 ISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGC 388

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           LP+ + Y+ ++  + +  +  +A  +  KL            N +++  ++ +L   G  
Sbjct: 389 LPDIVNYNTILAALCKNGNANQALEIFNKL-----RGMGCPPNVSSYNTMISALWSCGDR 443

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +    +   M       +E     +I  LCR G    A  ++  M + G  P+++SYN +
Sbjct: 444 SRALGMVPAMISKGIDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIV 503

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGL 219
           + GLCK      A  +  E I+ G  P+E TY +L+EG+
Sbjct: 504 LLGLCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIEGI 542


>gi|224144580|ref|XP_002325338.1| predicted protein [Populus trichocarpa]
 gi|222862213|gb|EEE99719.1| predicted protein [Populus trichocarpa]
          Length = 481

 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 118/448 (26%), Positives = 212/448 (47%), Gaps = 7/448 (1%)

Query: 35  LIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERM 94
           ++H  C+ G +  A K+ D M     +PNS   + L+RG++R   +ERA+ ++     + 
Sbjct: 28  ILHNLCKKGSLMEATKLIDIMSRVNQIPNSTCSTNLIRGLVRIGRIERASRVL-----KT 82

Query: 95  KEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGR 154
                L  +   +  +V   C+   +     + EDM       +      +I SL  +G+
Sbjct: 83  MVMSGLVPDVITYNMMVGGFCKRRQLRSAIDLLEDMSLSGCPPDVITYNTIIRSLFDNGK 142

Query: 155 NHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKV 214
              A        +RG  P L+ Y  ++  + KH G +RA ++LE+    G  P   TY  
Sbjct: 143 FDQAVEFWRGQLRRGCLPYLIPYTILIELVWKHCGTVRALEVLEDMAIEGCYPDLVTYNS 202

Query: 215 LVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQ 274
           LV     E   E A  ++  +LS          N  L +LC      E+  +L  M +T 
Sbjct: 203 LVNFASKEGKYEDAALIIYNILSHGMEPNAITYNSLLHSLCSCGLWDEVDEILAIMKKTS 262

Query: 275 CQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEA 334
             P V+T N +ING CK G +E A+     MV+ + C+PD +T+ T++  L   G + EA
Sbjct: 263 HPPTVVTYNILINGLCKCGLVERAINFFVQMVS-ENCSPDIITYNTLLTALCKEGMVDEA 321

Query: 335 LNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVID 394
           L  ++ ++     SPG++TYN V+ GL R   ++EA +++N M+  G+  D  T+  ++ 
Sbjct: 322 LQ-VFVLLSDSNCSPGLITYNTVIDGLTRRGYMDEALKLYNQMIEKGIAPDGITHRSLVW 380

Query: 395 GLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTP 454
           G C  +Q+++A     ++    +  ++  Y  +I GLCR+ ++  A+  L  ++     P
Sbjct: 381 GFCWIDQVEDAVEILREMGKRDHRINSSAYRLVINGLCRNKRVDIAIQVLEMMISGRYKP 440

Query: 455 NIVCYNVVIDGACKLSMKREAYQILREM 482
           +   Y+ +I       M  EA ++ +++
Sbjct: 441 DEEIYSTLIKSVADAGMVEEADELHQKL 468



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 108/418 (25%), Positives = 198/418 (47%), Gaps = 9/418 (2%)

Query: 97  EEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNH 156
           E D   NN    NL    C++G + E  ++ + M +   +       ++I  L R GR  
Sbjct: 19  ENDEETNNEILHNL----CKKGSLMEATKLIDIMSRVNQIPNSTCSTNLIRGLVRIGRIE 74

Query: 157 GASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLV 216
            ASRV+  M   GL P +++YN +V G CK      A  LLE+    G  P   TY  ++
Sbjct: 75  RASRVLKTMVMSGLVPDVITYNMMVGGFCKRRQLRSAIDLLEDMSLSGCPPDVITYNTII 134

Query: 217 EGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQ 276
             L      ++A +  +  L +  +       I +  +         L VL  M    C 
Sbjct: 135 RSLFDNGKFDQAVEFWRGQLRRGCLPYLIPYTILIELVWKHCGTVRALEVLEDMAIEGCY 194

Query: 277 PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALN 336
           PD++T N+++N   K G+ E+A  ++ ++++     P+A+T+ +++  L + G   E   
Sbjct: 195 PDLVTYNSLVNFASKEGKYEDAALIIYNILSHGM-EPNAITYNSLLHSLCSCGLWDEVDE 253

Query: 337 LLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 396
           +L  +M +  + P +VTYN ++ GL +   VE A   F  M+      D  TY  ++  L
Sbjct: 254 IL-AIMKKTSHPPTVVTYNILINGLCKCGLVERAINFFVQMVSENCSPDIITYNTLLTAL 312

Query: 397 CESNQLDEAKRFWDDIVWPSNIHDNYV-YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN 455
           C+   +DEA + +  ++  SN     + Y  +I GL R G + EA+    ++++ G+ P+
Sbjct: 313 CKEGMVDEALQVF-VLLSDSNCSPGLITYNTVIDGLTRRGYMDEALKLYNQMIEKGIAPD 371

Query: 456 IVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWR-ILDKLHGNRGNDFGLRI 512
            + +  ++ G C +    +A +ILREM K     ++  +R +++ L  N+  D  +++
Sbjct: 372 GITHRSLVWGFCWIDQVEDAVEILREMGKRDHRINSSAYRLVINGLCRNKRVDIAIQV 429



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/334 (23%), Positives = 147/334 (44%), Gaps = 77/334 (23%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           +A  + +++ S G  PN ++Y +L+H  C  G  D   ++   M+     P  +TY++L+
Sbjct: 215 DAALIIYNILSHGMEPNAITYNSLLHSLCSCGLWDEVDEILAIMKKTSHPPTVVTYNILI 274

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP 131
            G+ +   VERA     ++       E+ S +   +  L+ +LC+EG V+E         
Sbjct: 275 NGLCKCGLVERAINFFVQM-----VSENCSPDIITYNTLLTALCKEGMVDE--------- 320

Query: 132 QGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCM 191
                                     A +V  ++     +P L++YN+++ GL + G   
Sbjct: 321 --------------------------ALQVFVLLSDSNCSPGLITYNTVIDGLTRRGYMD 354

Query: 192 RAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYL 251
            A +L  + I+ G  P   T++ LV G C    +E A ++L+ M  K+D           
Sbjct: 355 EALKLYNQMIEKGIAPDGITHRSLVWGFCWIDQVEDAVEILREM-GKRD----------- 402

Query: 252 RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC 311
                       +N   + L             VING C+  R++ A++VL  M++G++ 
Sbjct: 403 ----------HRINSSAYRL-------------VINGLCRNKRVDIAIQVLEMMISGRY- 438

Query: 312 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQR 345
            PD   ++T+I  + + G ++EA + L+Q + +R
Sbjct: 439 KPDEEIYSTLIKSVADAGMVEEA-DELHQKLIER 471



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 86/198 (43%), Gaps = 1/198 (0%)

Query: 308 GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRV 367
           G     D  T   I+  L   G + EA  L+  +M +    P       ++RGL R+ R+
Sbjct: 15  GPLVENDEETNNEILHNLCKKGSLMEATKLI-DIMSRVNQIPNSTCSTNLIRGLVRIGRI 73

Query: 368 EEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAM 427
           E A  V   M+  G+V D  TY +++ G C+  QL  A    +D+       D   Y  +
Sbjct: 74  ERASRVLKTMVMSGLVPDVITYNMMVGGFCKRRQLRSAIDLLEDMSLSGCPPDVITYNTI 133

Query: 428 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
           I+ L  +GK  +AV F    +  G  P ++ Y ++I+   K      A ++L +M   G 
Sbjct: 134 IRSLFDNGKFDQAVEFWRGQLRRGCLPYLIPYTILIELVWKHCGTVRALEVLEDMAIEGC 193

Query: 488 NPDAVTWRILDKLHGNRG 505
            PD VT+  L       G
Sbjct: 194 YPDLVTYNSLVNFASKEG 211



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 78/153 (50%), Gaps = 5/153 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +  LC    V EA ++F  +      P +++Y T+I G  R G MD A K++++M   G+
Sbjct: 309 LTALCKEGMVDEALQVFVLLSDSNCSPGLITYNTVIDGLTRRGYMDEALKLYNQMIEKGI 368

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +T+  LV G      VE A  ++ ++ +R     D  +N++A+  +++ LCR   V
Sbjct: 369 APDGITHRSLVWGFCWIDQVEDAVEILREMGKR-----DHRINSSAYRLVINGLCRNKRV 423

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSG 153
           +   ++ E M  G+   +E     +I S+  +G
Sbjct: 424 DIAIQVLEMMISGRYKPDEEIYSTLIKSVADAG 456


>gi|302786208|ref|XP_002974875.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
 gi|300157770|gb|EFJ24395.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
          Length = 382

 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 98/319 (30%), Positives = 162/319 (50%), Gaps = 37/319 (11%)

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYL-PSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
           I+ GLC+ G   +A +  +  ++  +  P   +Y  L+ GLC    ++ A  + + M++ 
Sbjct: 16  ILQGLCRCGRVAQALEHFDASLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAA 75

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
                                               C+P+  T N +++G CK  R++ A
Sbjct: 76  GG----------------------------------CRPNAFTYNALVDGLCKQDRLDAA 101

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
             V+ +     F APD VT+ T++  L  +GR+ EAL    Q M + GY P +V++NA++
Sbjct: 102 RAVIAEARKRDF-APDVVTYNTLMAALFQLGRVDEALATFTQ-MTEEGYVPTLVSFNAII 159

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
            GL R RR+ +A EVFN M+      +  TY++VIDGLC+S+QLDEA++  D +V     
Sbjct: 160 TGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCR 219

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI 478
            D   Y  ++ G   +G++  A+  L  +V  G  P++V Y VVID  CK+    +A++I
Sbjct: 220 PDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEI 279

Query: 479 LREMRKNGLNPDAVTWRIL 497
            RE+  N  +P+ VT+  L
Sbjct: 280 FRELVANKCSPNVVTYSAL 298



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 107/357 (29%), Positives = 175/357 (49%), Gaps = 7/357 (1%)

Query: 145 MIDSLCRSGRNHGA-SRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQF 203
           ++  LCR GR   A       +      P +VSY ++++GLCK G    A+ L  + +  
Sbjct: 16  ILQGLCRCGRVAQALEHFDASLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAA 75

Query: 204 GYL-PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTE 262
           G   P+  TY  LV+GLC +  L+ AR V+     +         N  + AL  +    E
Sbjct: 76  GGCRPNAFTYNALVDGLCKQDRLDAARAVIAEARKRDFAPDVVTYNTLMAALFQLGRVDE 135

Query: 263 LLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTII 322
            L     M +    P +++ N +I G C+  R+ +AL+V N+M+   F  P+ VT++ +I
Sbjct: 136 ALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDF-HPNLVTYSVVI 194

Query: 323 FGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGV 382
            GL    ++ EA  LL + M   G  P +V Y  ++ G     R++ A  +   M+  G 
Sbjct: 195 DGLCKSDQLDEAQQLLDR-MVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGC 253

Query: 383 VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVH 442
           + D  TY +VID LC+  ++D+A   + ++V      +   Y+A+I G CR+ ++ E   
Sbjct: 254 IPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCRASRVDEGGK 313

Query: 443 FLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
            + E+      PN+V YN +I G   +    EAY + REM + G  PDA T+R L +
Sbjct: 314 VMREM---ACRPNVVTYNTMIWGLSMVDRNEEAYGMFREMSECGFVPDARTYRGLKR 367



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 116/388 (29%), Positives = 182/388 (46%), Gaps = 47/388 (12%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHV-PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCG-VL 61
           LC   RV +A + F       H  P+VVSYTTLI+G C+ G +D A+ +F +M   G   
Sbjct: 20  LCRCGRVAQALEHFDASLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCR 79

Query: 62  PNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVN 121
           PN+ TY+ LV G+ +   ++ A  ++ +  +R     D + +   +  L+ +L + G V+
Sbjct: 80  PNAFTYNALVDGLCKQDRLDAARAVIAEARKR-----DFAPDVVTYNTLMAALFQLGRVD 134

Query: 122 EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
           E       M +   V    +   +I  LCR+ R   A  V   M  R   P+LV+Y+ ++
Sbjct: 135 EALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVI 194

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
            GLCK      A QLL+  +  G  P    Y  LV G      L+ A  +L+ M+S+   
Sbjct: 195 DGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQG-- 252

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
                                            C PDV+T   VI+  CK+GR+++A ++
Sbjct: 253 ---------------------------------CIPDVVTYTVVIDKLCKVGRVDDAHEI 279

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
             ++VA K C+P+ VT++ +I G     R+ E      +VM +    P +VTYN ++ GL
Sbjct: 280 FRELVANK-CSPNVVTYSALIGGYCRASRVDEG----GKVMREMACRPNVVTYNTMIWGL 334

Query: 362 FRLRRVEEAKEVFNCMLGIGVVADSTTY 389
             + R EEA  +F  M   G V D+ TY
Sbjct: 335 SMVDRNEEAYGMFREMSECGFVPDARTY 362



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 74/318 (23%), Positives = 138/318 (43%), Gaps = 44/318 (13%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   R+  A  +  + + R   P+VV+Y TL+    + G +D A   F +M   G 
Sbjct: 89  VDGLCKQDRLDAARAVIAEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGY 148

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P  ++++ ++ G+ R R +  A  +  ++ +R     D   N   ++ ++D LC+   +
Sbjct: 149 VPTLVSFNAIITGLCRARRLADALEVFNEMIDR-----DFHPNLVTYSVVIDGLCKSDQL 203

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E  ++ + M       +  A   ++     +GR   A  ++  M  +G  P +V+Y  +
Sbjct: 204 DEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVV 263

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +  LCK G    A+++  E +     P+  TY  L+ G C  S +++  KV++ M     
Sbjct: 264 IDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCRASRVDEGGKVMREM----- 318

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                             C+P+V+T NT+I G   + R EEA  
Sbjct: 319 ---------------------------------ACRPNVVTYNTMIWGLSMVDRNEEAYG 345

Query: 301 VLNDMVAGKFCAPDAVTF 318
           +  +M    F  PDA T+
Sbjct: 346 MFREMSECGF-VPDARTY 362



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 71/268 (26%), Positives = 119/268 (44%), Gaps = 14/268 (5%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M  L  L RV EA   F  M   G+VP +VS+  +I G CR   +  A +VF+EM     
Sbjct: 124 MAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDF 183

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEE---EDLSVNNAAFANLVDSLCRE 117
            PN +TYSV++ G+ ++  ++ A     +L +RM  E    DL     A+  LV      
Sbjct: 184 HPNLVTYSVVIDGLCKSDQLDEAQ----QLLDRMVSEGCRPDL----VAYTPLVLGFSAA 235

Query: 118 GYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
           G ++    +   M     + +      +ID LC+ GR   A  +   +     +P++V+Y
Sbjct: 236 GRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTY 295

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
           ++++ G C+        +++ E       P+  TY  ++ GL      E+A  + + M  
Sbjct: 296 SALIGGYCRASRVDEGGKVMRE---MACRPNVVTYNTMIWGLSMVDRNEEAYGMFREMSE 352

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLN 265
              V   R      RAL +I +P  +L 
Sbjct: 353 CGFVPDARTYRGLKRALRMIDHPPHVLT 380


>gi|238478688|ref|NP_174320.2| PPR repeat domain-containing protein [Arabidopsis thaliana]
 gi|332193082|gb|AEE31203.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
          Length = 806

 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 127/486 (26%), Positives = 231/486 (47%), Gaps = 22/486 (4%)

Query: 3   QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           +LC  SR     ++   MK RG      +++ ++  Y R G++  A KV   M+  GV P
Sbjct: 221 KLCQGSR-----RVLVLMKRRGIYRTPEAFSRVMVSYSRAGQLRDALKVLTLMQRAGVEP 275

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           N L  +  +   +R   +E+A     +  ERM +   +  N   +  ++   C    V E
Sbjct: 276 NLLICNTTIDVFVRANRLEKA----LRFLERM-QVVGIVPNVVTYNCMIRGYCDLHRVEE 330

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKR-GLTPSLVSYNSIV 181
              + EDM     + ++ +   ++  LC+  R      ++  M K  GL P  V+YN+++
Sbjct: 331 AIELLEDMHSKGCLPDKVSYYTIMGYLCKEKRIVEVRDLMKKMAKEHGLVPDQVTYNTLI 390

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD- 240
           H L KH     A   L++  + G+   +  Y  +V  LC E  + +A+ ++  MLSK   
Sbjct: 391 HMLTKHDHADEALWFLKDAQEKGFRIDKLGYSAIVHALCKEGRMSEAKDLINEMLSKGHC 450

Query: 241 ----VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIE 296
               V  T + N + R L  +    +LL V   M     +P+ ++   ++NG C+ G+  
Sbjct: 451 PPDVVTYTAVVNGFCR-LGEVDKAKKLLQV---MHTHGHKPNTVSYTALLNGMCRTGKSL 506

Query: 297 EALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
           EA +++N M    + +P+++T++ I+ GL   G++ EA +++ + M  +G+ PG V  N 
Sbjct: 507 EAREMMN-MSEEHWWSPNSITYSVIMHGLRREGKLSEACDVVRE-MVLKGFFPGPVEINL 564

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416
           +L+ L R  R  EA++     L  G   +   +  VI G C++++LD A    DD+   +
Sbjct: 565 LLQSLCRDGRTHEARKFMEECLNKGCAINVVNFTTVIHGFCQNDELDAALSVLDDMYLIN 624

Query: 417 NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAY 476
              D + Y  ++  L + G+I EA   + +++  G+ P  V Y  VI   C++    +  
Sbjct: 625 KHADVFTYTTLVDTLGKKGRIAEATELMKKMLHKGIDPTPVTYRTVIHRYCQMGKVDDLV 684

Query: 477 QILREM 482
            IL +M
Sbjct: 685 AILEKM 690



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 109/405 (26%), Positives = 194/405 (47%), Gaps = 10/405 (2%)

Query: 106 AFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVM 165
           AF+ ++ S  R G + +  ++   M +         C   ID   R+ R   A R +  M
Sbjct: 244 AFSRVMVSYSRAGQLRDALKVLTLMQRAGVEPNLLICNTTIDVFVRANRLEKALRFLERM 303

Query: 166 RKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDL 225
           +  G+ P++V+YN ++ G C       A +LLE+    G LP + +Y  ++  LC E  +
Sbjct: 304 QVVGIVPNVVTYNCMIRGYCDLHRVEEAIELLEDMHSKGCLPDKVSYYTIMGYLCKEKRI 363

Query: 226 EKARKVLQFMLSKKDVDRTRIC-NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNT 284
            + R +++ M  +  +   ++  N  +  L    +  E L  L    +   + D +  + 
Sbjct: 364 VEVRDLMKKMAKEHGLVPDQVTYNTLIHMLTKHDHADEALWFLKDAQEKGFRIDKLGYSA 423

Query: 285 VINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ 344
           +++  CK GR+ EA  ++N+M++   C PD VT+T ++ G   +G + +A  LL QVM  
Sbjct: 424 IVHALCKEGRMSEAKDLINEMLSKGHCPPDVVTYTAVVNGFCRLGEVDKAKKLL-QVMHT 482

Query: 345 RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 404
            G+ P  V+Y A+L G+ R  +  EA+E+ N         +S TY++++ GL    +L E
Sbjct: 483 HGHKPNTVSYTALLNGMCRTGKSLEAREMMNMSEEHWWSPNSITYSVIMHGLRREGKLSE 542

Query: 405 AKRFWDDIV----WPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYN 460
           A     ++V    +P  +  N     +++ LCR G+ HEA  F+ E ++ G   N+V + 
Sbjct: 543 ACDVVREMVLKGFFPGPVEINL----LLQSLCRDGRTHEARKFMEECLNKGCAINVVNFT 598

Query: 461 VVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
            VI G C+      A  +L +M     + D  T+  L    G +G
Sbjct: 599 TVIHGFCQNDELDAALSVLDDMYLINKHADVFTYTTLVDTLGKKG 643



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 115/500 (23%), Positives = 229/500 (45%), Gaps = 9/500 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D     +R+ +A +    M+  G VPNVV+Y  +I GYC    ++ A ++ ++M   G 
Sbjct: 284 IDVFVRANRLEKALRFLERMQVVGIVPNVVTYNCMIRGYCDLHRVEEAIELLEDMHSKGC 343

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           LP+ ++Y  ++  + + + +     LM    ++M +E  L  +   +  L+  L +  + 
Sbjct: 344 LPDKVSYYTIMGYLCKEKRIVEVRDLM----KKMAKEHGLVPDQVTYNTLIHMLTKHDHA 399

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRG-LTPSLVSYNS 179
           +E     +D  +     ++     ++ +LC+ GR   A  ++  M  +G   P +V+Y +
Sbjct: 400 DEALWFLKDAQEKGFRIDKLGYSAIVHALCKEGRMSEAKDLINEMLSKGHCPPDVVTYTA 459

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           +V+G C+ G   +A +LL+     G+ P+  +Y  L+ G+C      +AR+++       
Sbjct: 460 VVNGFCRLGEVDKAKKLLQVMHTHGHKPNTVSYTALLNGMCRTGKSLEAREMMNMSEEHW 519

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
               +   ++ +  L      +E  +V+  M+     P  + +N ++   C+ GR  EA 
Sbjct: 520 WSPNSITYSVIMHGLRREGKLSEACDVVREMVLKGFFPGPVEINLLLQSLCRDGRTHEAR 579

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           K + + +  K CA + V FTT+I G      +  AL++L  +     ++  + TY  ++ 
Sbjct: 580 KFMEECL-NKGCAINVVNFTTVIHGFCQNDELDAALSVLDDMYLINKHA-DVFTYTTLVD 637

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
            L +  R+ EA E+   ML  G+     TY  VI   C+  ++D+     + ++  S   
Sbjct: 638 TLGKKGRIAEATELMKKMLHKGIDPTPVTYRTVIHRYCQMGKVDDLVAILEKMI--SRQK 695

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
              +Y  +I+ LC  GK+ EA   L +++ +    +      +++G  K  +   AY++ 
Sbjct: 696 CRTIYNQVIEKLCVLGKLEEADTLLGKVLRTASRSDAKTCYALMEGYLKKGVPLSAYKVA 755

Query: 480 REMRKNGLNPDAVTWRILDK 499
             M    L PD      L K
Sbjct: 756 CRMFNRNLIPDVKMCEKLSK 775



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 91/354 (25%), Positives = 164/354 (46%), Gaps = 2/354 (0%)

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
           M++ L ++    G+ RV+ +M++RG+  +  +++ ++    + G    A ++L    + G
Sbjct: 213 MLEVLSKTKLCQGSRRVLVLMKRRGIYRTPEAFSRVMVSYSRAGQLRDALKVLTLMQRAG 272

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL 264
             P+       ++     + LEKA + L+ M     V      N  +R  C +    E +
Sbjct: 273 VEPNLLICNTTIDVFVRANRLEKALRFLERMQVVGIVPNVVTYNCMIRGYCDLHRVEEAI 332

Query: 265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 324
            +L  M    C PD ++  T++   CK  RI E   ++  M       PD VT+ T+I  
Sbjct: 333 ELLEDMHSKGCLPDKVSYYTIMGYLCKEKRIVEVRDLMKKMAKEHGLVPDQVTYNTLIHM 392

Query: 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG-VV 383
           L       EAL  L     ++G+    + Y+A++  L +  R+ EAK++ N ML  G   
Sbjct: 393 LTKHDHADEALWFLKDAQ-EKGFRIDKLGYSAIVHALCKEGRMSEAKDLINEMLSKGHCP 451

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
            D  TY  V++G C   ++D+AK+    +    +  +   Y A++ G+CR+GK  EA   
Sbjct: 452 PDVVTYTAVVNGFCRLGEVDKAKKLLQVMHTHGHKPNTVSYTALLNGMCRTGKSLEAREM 511

Query: 444 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           +    +   +PN + Y+V++ G  +     EA  ++REM   G  P  V   +L
Sbjct: 512 MNMSEEHWWSPNSITYSVIMHGLRREGKLSEACDVVREMVLKGFFPGPVEINLL 565



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 91/384 (23%), Positives = 166/384 (43%), Gaps = 78/384 (20%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVP-NVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           LC   R+ EA  L  +M S+GH P +VV+YT +++G+CR GE+D A K+   M   G  P
Sbjct: 428 LCKEGRMSEAKDLINEMLSKGHCPPDVVTYTAVVNGFCRLGEVDKAKKLLQVMHTHGHKP 487

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           N+++Y+ L+ G+ RT     A  +M      M EE   S N+  ++ ++  L REG ++E
Sbjct: 488 NTVSYTALLNGMCRTGKSLEAREMM-----NMSEEHWWSPNSITYSVIMHGLRREGKLSE 542

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
              +  +M              ++ SLCR GR H A + +     +G   ++V++ +++H
Sbjct: 543 ACDVVREMVLKGFFPGPVEINLLLQSLCRDGRTHEARKFMEECLNKGCAINVVNFTTVIH 602

Query: 183 GLC-----------------------------------KHGGCMRAYQLLEEGIQFGYLP 207
           G C                                   K G    A +L+++ +  G  P
Sbjct: 603 GFCQNDELDAALSVLDDMYLINKHADVFTYTTLVDTLGKKGRIAEATELMKKMLHKGIDP 662

Query: 208 SEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVL 267
           +  TY+ ++   C    ++    +L+ M+S++   RT I N  +  LC++    E   +L
Sbjct: 663 TPVTYRTVIHRYCQMGKVDDLVAILEKMISRQKC-RT-IYNQVIEKLCVLGKLEEADTLL 720

Query: 268 VFMLQTQCQPDVITLNTVINGF-------------CKM---------------------- 292
             +L+T  + D  T   ++ G+             C+M                      
Sbjct: 721 GKVLRTASRSDAKTCYALMEGYLKKGVPLSAYKVACRMFNRNLIPDVKMCEKLSKRLVLK 780

Query: 293 GRIEEALKVLNDMVAGKFCAPDAV 316
           G+++EA K++  +V     +P ++
Sbjct: 781 GKVDEADKLMLRLVERGHISPQSL 804



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 105/233 (45%), Gaps = 9/233 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +  LC   R  EA K   +  ++G   NVV++TT+IHG+C+  E+D A  V D+M     
Sbjct: 566 LQSLCRDGRTHEARKFMEECLNKGCAINVVNFTTVIHGFCQNDELDAALSVLDDMYLINK 625

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             +  TY+ LV  + +   +  A  LM K+  +      +      +  ++   C+ G V
Sbjct: 626 HADVFTYTTLVDTLGKKGRIAEATELMKKMLHK-----GIDPTPVTYRTVIHRYCQMGKV 680

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVV-YVMRKRGLTPSLVSYNS 179
           +++  I E M   +     +    +I+ LC  G+   A  ++  V+R    + +   Y +
Sbjct: 681 DDLVAILEKMISRQKCRTIY--NQVIEKLCVLGKLEEADTLLGKVLRTASRSDAKTCY-A 737

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVL 232
           ++ G  K G  + AY++         +P     + L + L  +  +++A K++
Sbjct: 738 LMEGYLKKGVPLSAYKVACRMFNRNLIPDVKMCEKLSKRLVLKGKVDEADKLM 790


>gi|77552391|gb|ABA95188.1| salt-inducible protein, putative [Oryza sativa Japonica Group]
          Length = 938

 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 130/523 (24%), Positives = 238/523 (45%), Gaps = 39/523 (7%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           MD LC   R+ EA KL  +   +G  P+V  Y+ LI  YC+ G +  A   ++ M   G+
Sbjct: 419 MDGLCKEMRLDEAEKLLENKARQGSNPDVYGYSYLIRSYCKMGNLINAVDHYEAMVSHGI 478

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             N    S L++   +      A     K      ++  L ++   +   +D+ C+ G +
Sbjct: 479 ETNCHIVSYLLQCFRKLGMTSEAIAYFLKF-----KDSGLHLDKVIYNIAMDTYCKNGNM 533

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           NE  ++  +M  G    ++     +I   C  G    A +V   M K  + P +V+YN +
Sbjct: 534 NEAVKLLNEMKYGGLTPDKIHYTCLISGYCLKGEMQNAQQVFEEMLKANIEPDIVTYNIL 593

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
             G CK G  M  + LL+     G  P+  TY + + G C   +L +A +VL  ++ +K 
Sbjct: 594 ASGFCKSGLVMEVFDLLDRMADQGLEPNSLTYGIAIVGFCRGGNLSEA-EVLFNVVEEKG 652

Query: 241 VDRTRICNIYLRALC--LIKNPTELLNVLVFMLQTQCQ-PDVITLNTVINGFCKMGRIEE 297
           +D   +  +Y   +C  L+   T+   +L   +  Q    D  + + +IN  C++G ++ 
Sbjct: 653 IDHIEV--MYSSMVCGYLLSGWTDHAYMLFVRVARQGNLVDHFSCSKLINDLCRVGNVQG 710

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           A  V   M+      PD ++++ +I      G + +A +L +  M QRG S  ++ Y  +
Sbjct: 711 ASNVCKIMLEHDV-VPDVISYSKLISIYCQNGDMDKA-HLWFHDMVQRGLSVDVIVYTIL 768

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA-KRFWDDIVWP- 415
           + G  +  R++EA ++F  M  +G+  D   Y +++DG      L E  ++ W+ I    
Sbjct: 769 MNGYCKAGRLQEACQLFVQMTNLGIKPDVIAYTVLLDG-----HLKETLQQGWEGIAKER 823

Query: 416 -------------SNIHDNYV------YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNI 456
                        S++ D  +      Y  +I G C++  + EA     E++  G+TP+ 
Sbjct: 824 RSFLLRANHNKLLSSMKDMQIEPDVPCYTVLIDGKCKAEYLVEARELFDEMLQKGLTPDA 883

Query: 457 VCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
             Y  +I+G C      +A  +L+EM   G+ PD +T+ +L++
Sbjct: 884 YAYTALINGYCSQGEISKAEDLLQEMIDKGIEPDELTFSVLNQ 926



 Score =  151 bits (381), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 123/524 (23%), Positives = 225/524 (42%), Gaps = 86/524 (16%)

Query: 22  SRGHVP-NVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDV 80
           +R  VP   ++Y  ++ G C+   +D A K+ +     G  P+   YS L+R   +  ++
Sbjct: 404 NREKVPVEAMAYNMVMDGLCKEMRLDEAEKLLENKARQGSNPDVYGYSYLIRSYCKMGNL 463

Query: 81  ERA----------------NVLMFKLWERMK--------------EEEDLSVNNAAFANL 110
             A                +++ + L    K              ++  L ++   +   
Sbjct: 464 INAVDHYEAMVSHGIETNCHIVSYLLQCFRKLGMTSEAIAYFLKFKDSGLHLDKVIYNIA 523

Query: 111 VDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGL 170
           +D+ C+ G +NE  ++  +M  G    ++     +I   C  G    A +V   M K  +
Sbjct: 524 MDTYCKNGNMNEAVKLLNEMKYGGLTPDKIHYTCLISGYCLKGEMQNAQQVFEEMLKANI 583

Query: 171 TPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARK 230
            P +V+YN +  G CK G  M  + LL+     G  P+  TY + + G C   +L +A +
Sbjct: 584 EPDIVTYNILASGFCKSGLVMEVFDLLDRMADQGLEPNSLTYGIAIVGFCRGGNLSEA-E 642

Query: 231 VLQFMLSKKDVDRTRI------------------------------------CNIYLRAL 254
           VL  ++ +K +D   +                                    C+  +  L
Sbjct: 643 VLFNVVEEKGIDHIEVMYSSMVCGYLLSGWTDHAYMLFVRVARQGNLVDHFSCSKLINDL 702

Query: 255 CLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPD 314
           C + N     NV   ML+    PDVI+ + +I+ +C+ G +++A    +DMV  +  + D
Sbjct: 703 CRVGNVQGASNVCKIMLEHDVVPDVISYSKLISIYCQNGDMDKAHLWFHDMVQ-RGLSVD 761

Query: 315 AVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR--LRRVEE--A 370
            + +T ++ G    GR+QEA  L  Q M   G  P ++ Y  +L G  +  L++  E  A
Sbjct: 762 VIVYTILMNGYCKAGRLQEACQLFVQ-MTNLGIKPDVIAYTVLLDGHLKETLQQGWEGIA 820

Query: 371 KE------------VFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
           KE            + + M  + +  D   Y ++IDG C++  L EA+  +D+++     
Sbjct: 821 KERRSFLLRANHNKLLSSMKDMQIEPDVPCYTVLIDGKCKAEYLVEARELFDEMLQKGLT 880

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVV 462
            D Y Y A+I G C  G+I +A   L E++D G+ P+ + ++V+
Sbjct: 881 PDAYAYTALINGYCSQGEISKAEDLLQEMIDKGIEPDELTFSVL 924



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 120/481 (24%), Positives = 225/481 (46%), Gaps = 17/481 (3%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           +V EA +++ +M   G  P+   Y++ + G C  G+ D+AY +  E+    V   ++ Y+
Sbjct: 357 KVDEALQVWAEMTEMGVKPDARGYSSFLIGLCDCGKYDLAYVILQEINREKVPVEAMAYN 416

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREG-YVNEVFRIA 127
           +++ G+ +   ++ A     KL E  K  +  + +   ++ L+ S C+ G  +N V    
Sbjct: 417 MVMDGLCKEMRLDEAE----KLLEN-KARQGSNPDVYGYSYLIRSYCKMGNLINAVDHYE 471

Query: 128 EDMPQGKSVNEEFACGHMIDSLCRSGRNHG--ASRVVYVMRKR--GLTPSLVSYNSIVHG 183
             +  G   N      H++  L +  R  G  +  + Y ++ +  GL    V YN  +  
Sbjct: 472 AMVSHGIETN-----CHIVSYLLQCFRKLGMTSEAIAYFLKFKDSGLHLDKVIYNIAMDT 526

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK+G    A +LL E    G  P +  Y  L+ G C + +++ A++V + ML       
Sbjct: 527 YCKNGNMNEAVKLLNEMKYGGLTPDKIHYTCLISGYCLKGEMQNAQQVFEEMLKANIEPD 586

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               NI     C      E+ ++L  M     +P+ +T    I GFC+ G + EA +VL 
Sbjct: 587 IVTYNILASGFCKSGLVMEVFDLLDRMADQGLEPNSLTYGIAIVGFCRGGNLSEA-EVLF 645

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           ++V  K      V +++++ G L  G    A  L  +V  Q G      + + ++  L R
Sbjct: 646 NVVEEKGIDHIEVMYSSMVCGYLLSGWTDHAYMLFVRVARQ-GNLVDHFSCSKLINDLCR 704

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
           +  V+ A  V   ML   VV D  +Y+ +I   C++  +D+A  ++ D+V      D  V
Sbjct: 705 VGNVQGASNVCKIMLEHDVVPDVISYSKLISIYCQNGDMDKAHLWFHDMVQRGLSVDVIV 764

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y  ++ G C++G++ EA     ++ + G+ P+++ Y V++DG  K ++++    I +E R
Sbjct: 765 YTILMNGYCKAGRLQEACQLFVQMTNLGIKPDVIAYTVLLDGHLKETLQQGWEGIAKERR 824

Query: 484 K 484
            
Sbjct: 825 S 825



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 112/486 (23%), Positives = 220/486 (45%), Gaps = 15/486 (3%)

Query: 16  LFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVL 75
           LF  +   G VP+V ++  L+     TGE ++    ++EM+   + P+  T++++ R + 
Sbjct: 294 LFSGICRLGVVPSVWTWNLLLKFIAETGEYEMVLAAYNEMKCFQLTPDVYTFAIVTRSLF 353

Query: 76  RTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKS 135
           + + V+ A     ++W  M E   +  +   +++ +  LC  G  +  + I +++ + K 
Sbjct: 354 QAKKVDEA----LQVWAEMTEM-GVKPDARGYSSFLIGLCDCGKYDLAYVILQEINREKV 408

Query: 136 VNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQ 195
             E  A   ++D LC+  R   A +++    ++G  P +  Y+ ++   CK G  + A  
Sbjct: 409 PVEAMAYNMVMDGLCKEMRLDEAEKLLENKARQGSNPDVYGYSYLIRSYCKMGNLINAVD 468

Query: 196 LLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD----VDRTRICNIYL 251
             E  +  G   + H    L++       L    + + + L  KD    +D+  I NI +
Sbjct: 469 HYEAMVSHGIETNCHIVSYLLQCF---RKLGMTSEAIAYFLKFKDSGLHLDKV-IYNIAM 524

Query: 252 RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC 311
              C   N  E + +L  M      PD I    +I+G+C  G ++ A +V  +M+     
Sbjct: 525 DTYCKNGNMNEAVKLLNEMKYGGLTPDKIHYTCLISGYCLKGEMQNAQQVFEEMLKANI- 583

Query: 312 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK 371
            PD VT+  +  G    G + E  +LL + M  +G  P  +TY   + G  R   + EA+
Sbjct: 584 EPDIVTYNILASGFCKSGLVMEVFDLLDR-MADQGLEPNSLTYGIAIVGFCRGGNLSEAE 642

Query: 372 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 431
            +FN +   G+      Y+ ++ G   S   D A   +  +    N+ D++  + +I  L
Sbjct: 643 VLFNVVEEKGIDHIEVMYSSMVCGYLLSGWTDHAYMLFVRVARQGNLVDHFSCSKLINDL 702

Query: 432 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 491
           CR G +  A +    +++  V P+++ Y+ +I   C+     +A+    +M + GL+ D 
Sbjct: 703 CRVGNVQGASNVCKIMLEHDVVPDVISYSKLISIYCQNGDMDKAHLWFHDMVQRGLSVDV 762

Query: 492 VTWRIL 497
           + + IL
Sbjct: 763 IVYTIL 768



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 115/423 (27%), Positives = 194/423 (45%), Gaps = 66/423 (15%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           MD  C    + EA KL  +MK  G  P+ + YT LI GYC  GEM  A +VF+EM    +
Sbjct: 524 MDTYCKNGNMNEAVKLLNEMKYGGLTPDKIHYTCLISGYCLKGEMQNAQQVFEEMLKANI 583

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TY++L  G  ++  V      +F L +RM  ++ L  N+  +   +   CR G +
Sbjct: 584 EPDIVTYNILASGFCKSGLVME----VFDLLDRMA-DQGLEPNSLTYGIAIVGFCRGGNL 638

Query: 121 NE---VFRIAED---------------------------------MPQGKSVNEEFACGH 144
           +E   +F + E+                                   QG  V + F+C  
Sbjct: 639 SEAEVLFNVVEEKGIDHIEVMYSSMVCGYLLSGWTDHAYMLFVRVARQGNLV-DHFSCSK 697

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
           +I+ LCR G   GAS V  +M +  + P ++SY+ ++   C++G   +A+    + +Q G
Sbjct: 698 LINDLCRVGNVQGASNVCKIMLEHDVVPDVISYSKLISIYCQNGDMDKAHLWFHDMVQRG 757

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS---KKDV-DRTRICNIYL--------- 251
                  Y +L+ G C    L++A ++   M +   K DV   T + + +L         
Sbjct: 758 LSVDVIVYTILMNGYCKAGRLQEACQLFVQMTNLGIKPDVIAYTVLLDGHLKETLQQGWE 817

Query: 252 ------RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM 305
                 R+  L  N  +LL+    M   Q +PDV     +I+G CK   + EA ++ ++M
Sbjct: 818 GIAKERRSFLLRANHNKLLSS---MKDMQIEPDVPCYTVLIDGKCKAEYLVEARELFDEM 874

Query: 306 VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLR 365
           +  K   PDA  +T +I G  + G I +A +LL Q M  +G  P  +T++ + +   R R
Sbjct: 875 LQ-KGLTPDAYAYTALINGYCSQGEISKAEDLL-QEMIDKGIEPDELTFSVLNQSSLRSR 932

Query: 366 RVE 368
           +++
Sbjct: 933 KIQ 935



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 80/174 (45%)

Query: 333 EALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIV 392
           +A   L+  + + G  P + T+N +L+ +      E     +N M    +  D  T+AIV
Sbjct: 289 QATICLFSGICRLGVVPSVWTWNLLLKFIAETGEYEMVLAAYNEMKCFQLTPDVYTFAIV 348

Query: 393 IDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGV 452
              L ++ ++DEA + W ++       D   Y++ + GLC  GK   A   L E+    V
Sbjct: 349 TRSLFQAKKVDEALQVWAEMTEMGVKPDARGYSSFLIGLCDCGKYDLAYVILQEINREKV 408

Query: 453 TPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
               + YN+V+DG CK     EA ++L    + G NPD   +  L + +   GN
Sbjct: 409 PVEAMAYNMVMDGLCKEMRLDEAEKLLENKARQGSNPDVYGYSYLIRSYCKMGN 462


>gi|302771513|ref|XP_002969175.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
 gi|300163680|gb|EFJ30291.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
          Length = 399

 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 108/366 (29%), Positives = 187/366 (51%), Gaps = 13/366 (3%)

Query: 31  SYTTLIHGYCRTGEMDVAYKVFDEM-RHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFK 89
           +Y  L+  +C  GE+  A  +  EM +  G+ P    Y+  V  + ++  V  A     +
Sbjct: 20  TYFVLVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEA----ME 75

Query: 90  LWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSL 149
           + + MK+      +   F  L+  LC+ G ++E  ++ ++M +            +I+ L
Sbjct: 76  VVKNMKDGA-CKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGL 134

Query: 150 CRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQ-FGYLPS 208
             +GR+  A   V VM+    TP   +YN+I+HG CK G   RAY  LEE  Q  G  P 
Sbjct: 135 SSAGRSGEA---VLVMQGMTTTPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPD 191

Query: 209 EHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC-NIYLRALCLIKNPTELLNVL 267
             TY +L+ GLC  S+L KA ++LQ M+ +KD   + +  N  +   C  ++      +L
Sbjct: 192 TFTYSILINGLCKSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELL 251

Query: 268 VFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLN 327
             ML+  C PDV+T +T+I+G C+ G +++   +L  MV+ + C PD VT+T ++ GL  
Sbjct: 252 SSMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVS-RGCKPDVVTYTVLVTGLCK 310

Query: 328 VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADST 387
            G++ EA  L+ + M + G +P  VTY+ V  GL ++ +++ A ++   +   G V D  
Sbjct: 311 AGKMVEACRLVKR-MLEDGCTPNAVTYSLVFDGLCKIDKLDMANDLLTSIRDKGRVTDVV 369

Query: 388 TYAIVI 393
            +  ++
Sbjct: 370 AFETLL 375



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 106/396 (26%), Positives = 182/396 (45%), Gaps = 39/396 (9%)

Query: 103 NNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFAC-GHMIDSLCRSGRNHGASRV 161
           +N  +  LV + C  G +     +  +M Q   +    +     + +LC+SG+   A  V
Sbjct: 17  DNYTYFVLVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEV 76

Query: 162 VYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCG 221
           V  M+     P +V++N+++ GLCK G    A Q+L+E  + G+  +  TY  L+ GL  
Sbjct: 77  VKNMKDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSS 136

Query: 222 ESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVIT 281
                +A  V+Q M +                                       PD  T
Sbjct: 137 AGRSGEAVLVMQGMTT--------------------------------------TPDTQT 158

Query: 282 LNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQV 341
            N +I+GFCK G I+ A   L +M     C+PD  T++ +I GL     +++A  LL ++
Sbjct: 159 YNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLRKADELLQEM 218

Query: 342 MPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ 401
           + ++     +V +N ++ G  + + ++ A+E+ + ML  G   D  TY+ +IDGLC    
Sbjct: 219 IGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLCRCGD 278

Query: 402 LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNV 461
           +D+     + +V      D   Y  ++ GLC++GK+ EA   +  +++ G TPN V Y++
Sbjct: 279 VDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDGCTPNAVTYSL 338

Query: 462 VIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           V DG CK+     A  +L  +R  G   D V +  L
Sbjct: 339 VFDGLCKIDKLDMANDLLTSIRDKGRVTDVVAFETL 374



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 104/421 (24%), Positives = 188/421 (44%), Gaps = 50/421 (11%)

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           L ++ TY VLVR      +++ A      L   M+++  ++   + +   V +LC+ G V
Sbjct: 15  LFDNYTYFVLVRAHCLAGELQAA----MDLLREMEQQPGMAPTPSMYNFFVHALCKSGKV 70

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E   + ++M  G    +      +I  LC++GR   A +V+  M + G   +LV+YN++
Sbjct: 71  PEAMEVVKNMKDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTL 130

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++GL   G    A  L+ +G+     P   TY  ++ G C   ++++A   L+ M  +  
Sbjct: 131 INGLSSAGRSGEAV-LVMQGMT--TTPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQR-- 185

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                             C PD  T + +ING CK   + +A +
Sbjct: 186 --------------------------------AGCSPDTFTYSILINGLCKSSNLRKADE 213

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +L +M+  K C    V F T++ G      +  A  LL   M + G +P +VTY+ ++ G
Sbjct: 214 LLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSS-MLEHGCAPDVVTYSTIIDG 272

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA----KRFWDDIVWPS 416
           L R   V++   +   M+  G   D  TY +++ GLC++ ++ EA    KR  +D   P+
Sbjct: 273 LCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDGCTPN 332

Query: 417 NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAY 476
            +     Y+ +  GLC+  K+  A   L  + D G   ++V +  ++    K  + R A+
Sbjct: 333 AV----TYSLVFDGLCKIDKLDMANDLLTSIRDKGRVTDVVAFETLLLSVKKRLLDRAAF 388

Query: 477 Q 477
           Q
Sbjct: 389 Q 389



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 94/357 (26%), Positives = 167/357 (46%), Gaps = 47/357 (13%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   +V EA ++  +MK     P+VV++ TLI G C+ G +D A +V DEM   G   N
Sbjct: 64  LCKSGKVPEAMEVVKNMKDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAAN 123

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY+ L+ G+        A ++M    + M    D    NA    ++   C+ G ++  
Sbjct: 124 LVTYNTLINGLSSAGRSGEAVLVM----QGMTTTPDTQTYNA----IIHGFCKSGEIDRA 175

Query: 124 FRIAEDMPQGKSVNEE-FACGHMIDSLCRSGRNHGASRVVYVM-RKRGLTPSLVSYNSIV 181
           +   E+M Q    + + F    +I+ LC+S     A  ++  M  ++    S+V++N++V
Sbjct: 176 YGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLRKADELLQEMIGRKDCCASVVAFNTLV 235

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
            G CK     RA +LL   ++ G  P   TY  +++GLC   D++K   +L+ M+S+   
Sbjct: 236 DGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRG-- 293

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
                                            C+PDV+T   ++ G CK G++ EA ++
Sbjct: 294 ---------------------------------CKPDVVTYTVLVTGLCKAGKMVEACRL 320

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
           +  M+    C P+AVT++ +  GL  + ++  A +LL  +   +G    +V +  +L
Sbjct: 321 VKRMLEDG-CTPNAVTYSLVFDGLCKIDKLDMANDLLTSIR-DKGRVTDVVAFETLL 375



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 62/116 (53%), Gaps = 5/116 (4%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C    +  A +L   M   G  P+VV+Y+T+I G CR G++D  + + ++M   G 
Sbjct: 235 VDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGC 294

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCR 116
            P+ +TY+VLV G+ +   +  A     +L +RM  E+  + N   ++ + D LC+
Sbjct: 295 KPDVVTYTVLVTGLCKAGKMVEA----CRLVKRML-EDGCTPNAVTYSLVFDGLCK 345



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 52/93 (55%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    V +   L   M SRG  P+VV+YT L+ G C+ G+M  A ++   M   G 
Sbjct: 270 IDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDGC 329

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWER 93
            PN++TYS++  G+ +   ++ AN L+  + ++
Sbjct: 330 TPNAVTYSLVFDGLCKIDKLDMANDLLTSIRDK 362



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 1/81 (1%)

Query: 418 IHDNYVYAAMIKGLCRSGKIHEAVHFLYEL-VDSGVTPNIVCYNVVIDGACKLSMKREAY 476
           + DNY Y  +++  C +G++  A+  L E+    G+ P    YN  +   CK     EA 
Sbjct: 15  LFDNYTYFVLVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAM 74

Query: 477 QILREMRKNGLNPDAVTWRIL 497
           ++++ M+     PD VT+  L
Sbjct: 75  EVVKNMKDGACKPDVVTFNTL 95


>gi|359472741|ref|XP_003631192.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Vitis vinifera]
          Length = 708

 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 128/464 (27%), Positives = 226/464 (48%), Gaps = 16/464 (3%)

Query: 35  LIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERM 94
           ++  +   G++  A  +  EM++ G++P++ T + ++   +    VE A  +  ++ +R 
Sbjct: 160 MVMNFAENGKLKEAVNMVVEMQNQGLVPSTQTLNCVLDVAVGMGLVEIAENMFVEMCQR- 218

Query: 95  KEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGR 154
                +S +  +F  +V + C  G V E  R    M +   + +   C  +ID+ C+ G 
Sbjct: 219 ----GVSPDCVSFKLMVVACCNMGRVLEAERWLNAMVERGFIVDNATCTLIIDAFCQKGY 274

Query: 155 NHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKV 214
            +      + M + GL P+++++ ++++GLCK G   +A++LLEE ++ G+ P+ +T+  
Sbjct: 275 VNRVVGYFWKMVEMGLAPNVINFTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTT 334

Query: 215 LVEGLCGESDLEKA-RKVLQFMLS---KKDVDR-TRICNIYLRALCLIKNPTELLNVLVF 269
           L++GLC +   EKA R  L+ + S   K +V   T + N Y +   L  N  E+L  L  
Sbjct: 335 LIDGLCKKGWTEKAFRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKL--NRAEML--LSR 390

Query: 270 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG 329
           M +    P+  T  T+I+G CK+G    A +++ D++  +  +P+  T+  II GL   G
Sbjct: 391 MQEQGLVPNTNTYTTLIDGHCKVGNFVRAYELM-DLMGKEGFSPNIYTYNAIIDGLCKKG 449

Query: 330 RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTY 389
            + EA  LL +V    G     VTY  ++    R      +   FN ML +G   D  +Y
Sbjct: 450 SLDEAYRLLNKV-SVHGLQADGVTYTILMSVHCRQADTNRSLVFFNKMLKVGFTPDIHSY 508

Query: 390 AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449
             +I   C   Q+ E++R +++ V    I     Y +MI G CR G    AV     + +
Sbjct: 509 TTLISTFCRQKQMKESERLFEEAVSLGLIPTKKTYTSMICGYCRYGNTSLAVKLFQRMSN 568

Query: 450 SGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVT 493
            G  P+ + Y  +I G CK S   +A  +   M   GL+P  VT
Sbjct: 569 HGCAPDSITYGALISGLCKESKLDDARNLYDAMMDKGLSPCEVT 612



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 114/485 (23%), Positives = 209/485 (43%), Gaps = 43/485 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D   G+  V  A  +F +M  RG  P+ VS+  ++   C  G                 
Sbjct: 196 LDVAVGMGLVEIAENMFVEMCQRGVSPDCVSFKLMVVACCNMG----------------- 238

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
                          R  + ER        W     E    V+NA    ++D+ C++GYV
Sbjct: 239 ---------------RVLEAER--------WLNAMVERGFIVDNATCTLIIDAFCQKGYV 275

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           N V      M +            +I+ LC+ G    A  ++  M +RG  P++ ++ ++
Sbjct: 276 NRVVGYFWKMVEMGLAPNVINFTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTTL 335

Query: 181 VHGLCKHGGCMRAYQLLEEGIQF-GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           + GLCK G   +A++L  + ++  GY P+ HTY  ++ G C E  L +A  +L  M  + 
Sbjct: 336 IDGLCKKGWTEKAFRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQG 395

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
            V  T      +   C + N      ++  M +    P++ T N +I+G CK G ++EA 
Sbjct: 396 LVPNTNTYTTLIDGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAY 455

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           ++LN +      A D VT+T ++           +L + +  M + G++P I +Y  ++ 
Sbjct: 456 RLLNKVSVHGLQA-DGVTYTILMSVHCRQADTNRSL-VFFNKMLKVGFTPDIHSYTTLIS 513

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
              R ++++E++ +F   + +G++    TY  +I G C       A + +  +       
Sbjct: 514 TFCRQKQMKESERLFEEAVSLGLIPTKKTYTSMICGYCRYGNTSLAVKLFQRMSNHGCAP 573

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           D+  Y A+I GLC+  K+ +A +    ++D G++P  V    +    CK      A  +L
Sbjct: 574 DSITYGALISGLCKESKLDDARNLYDAMMDKGLSPCEVTRLTLAYEYCKKDDSSTAINVL 633

Query: 480 REMRK 484
             + K
Sbjct: 634 DRLEK 638



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 111/463 (23%), Positives = 225/463 (48%), Gaps = 33/463 (7%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C + RV EA +    M  RG + +  + T +I  +C+ G ++     F +M   G+ PN 
Sbjct: 235 CNMGRVLEAERWLNAMVERGFIVDNATCTLIIDAFCQKGYVNRVVGYFWKMVEMGLAPNV 294

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           + ++ L+ G+ +   +++A    F+L E M        N      L+D LC++G+  + F
Sbjct: 295 INFTALINGLCKQGSIKQA----FELLEEMV-RRGWKPNVYTHTTLIDGLCKKGWTEKAF 349

Query: 125 RIAEDMPQGKSVNEEF-ACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           R+   + +             MI+  C+  + + A  ++  M+++GL P+  +Y +++ G
Sbjct: 350 RLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTLIDG 409

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM----LSKK 239
            CK G  +RAY+L++   + G+ P+ +TY  +++GLC +  L++A ++L  +    L   
Sbjct: 410 HCKVGNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHGLQAD 469

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVF---MLQTQCQPDVITLNTVINGFCKMGRIE 296
            V  T + +++ R         +    LVF   ML+    PD+ +  T+I+ FC+  +++
Sbjct: 470 GVTYTILMSVHCRQ-------ADTNRSLVFFNKMLKVGFTPDIHSYTTLISTFCRQKQMK 522

Query: 297 EALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
           E+ ++  + V+     P   T+T++I G    G    A+  L+Q M   G +P  +TY A
Sbjct: 523 ESERLFEEAVSLGL-IPTKKTYTSMICGYCRYGNTSLAVK-LFQRMSNHGCAPDSITYGA 580

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI---V 413
           ++ GL +  ++++A+ +++ M+  G+     T   +    C+ +    A    D +    
Sbjct: 581 LISGLCKESKLDDARNLYDAMMDKGLSPCEVTRLTLAYEYCKKDDSSTAINVLDRLEKRQ 640

Query: 414 WPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNI 456
           W   ++       +++ LC  GK+  A  F ++L+D    PN+
Sbjct: 641 WIRTVN------TLVRKLCSEGKLDMAALFFHKLLDK--EPNV 675



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 95/375 (25%), Positives = 163/375 (43%), Gaps = 48/375 (12%)

Query: 137 NEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQL 196
           NE   C  M+ +   +G+   A  +V  M+ +GL PS  + N ++      G    A  +
Sbjct: 154 NEVMQC--MVMNFAENGKLKEAVNMVVEMQNQGLVPSTQTLNCVLDVAVGMGLVEIAENM 211

Query: 197 LEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCL 256
             E  Q G  P   ++K++V   C    + +A + L  M+ +  +     C +       
Sbjct: 212 FVEMCQRGVSPDCVSFKLMVVACCNMGRVLEAERWLNAMVERGFIVDNATCTL------- 264

Query: 257 IKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAV 316
                                       +I+ FC+ G +   +     MV     AP+ +
Sbjct: 265 ----------------------------IIDAFCQKGYVNRVVGYFWKMVEMGL-APNVI 295

Query: 317 TFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVF-N 375
            FT +I GL   G I++A  LL + M +RG+ P + T+  ++ GL +    E+A  +F  
Sbjct: 296 NFTALINGLCKQGSIKQAFELLEE-MVRRGWKPNVYTHTTLIDGLCKKGWTEKAFRLFLK 354

Query: 376 CMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG 435
            +   G   +  TY  +I+G C+ ++L+ A+     +     + +   Y  +I G C+ G
Sbjct: 355 LVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTLIDGHCKVG 414

Query: 436 KIHEAVHFLYELVD----SGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 491
               A    YEL+D     G +PNI  YN +IDG CK     EAY++L ++  +GL  D 
Sbjct: 415 NFVRA----YELMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHGLQADG 470

Query: 492 VTWRILDKLHGNRGN 506
           VT+ IL  +H  + +
Sbjct: 471 VTYTILMSVHCRQAD 485



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 88/339 (25%), Positives = 144/339 (42%), Gaps = 37/339 (10%)

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQF-GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
           ++V  L    G M A   L   I F  +      Y V    L G  +LE+A +V+Q    
Sbjct: 103 TVVASLADEAGSMVALSFLYWAIGFPKFRHFMRLYIVSATALIGNKNLERANEVMQ---- 158

Query: 238 KKDVDRTRICNIYLRALCLIKNPTE------LLNVLVFMLQTQCQPDVITLNTVINGFCK 291
                            C++ N  E       +N++V M      P   TLN V++    
Sbjct: 159 -----------------CMVMNFAENGKLKEAVNMVVEMQNQGLVPSTQTLNCVLDVAVG 201

Query: 292 MGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGI 351
           MG +E A  +  +M   +  +PD V+F  ++    N+GR+ EA   L   M +RG+    
Sbjct: 202 MGLVEIAENMFVEMCQ-RGVSPDCVSFKLMVVACCNMGRVLEAERWL-NAMVERGFIVDN 259

Query: 352 VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDD 411
            T   ++    +   V      F  M+ +G+  +   +  +I+GLC+   + +A    ++
Sbjct: 260 ATCTLIIDAFCQKGYVNRVVGYFWKMVEMGLAPNVINFTALINGLCKQGSIKQAFELLEE 319

Query: 412 IV---WPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS-GVTPNIVCYNVVIDGAC 467
           +V   W  N+   Y +  +I GLC+ G   +A     +LV S G  PN+  Y  +I+G C
Sbjct: 320 MVRRGWKPNV---YTHTTLIDGLCKKGWTEKAFRLFLKLVRSDGYKPNVHTYTAMINGYC 376

Query: 468 KLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           K      A  +L  M++ GL P+  T+  L   H   GN
Sbjct: 377 KEDKLNRAEMLLSRMQEQGLVPNTNTYTTLIDGHCKVGN 415


>gi|224136626|ref|XP_002322376.1| predicted protein [Populus trichocarpa]
 gi|222869372|gb|EEF06503.1| predicted protein [Populus trichocarpa]
          Length = 715

 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 126/483 (26%), Positives = 218/483 (45%), Gaps = 14/483 (2%)

Query: 7   LSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLT 66
           + +  EA  +  +M++ G V  V +   +       G +  A  VFDEMR  GV P+S++
Sbjct: 174 IGKFQEAVNMVIEMENHGLVLTVRTLNCVTGVAGEMGLVGYAENVFDEMRVRGVCPDSVS 233

Query: 67  YSVLVRGVL---RTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           Y ++        R  D +R        W +        V+NA    ++ + C +G+ + V
Sbjct: 234 YKLMAIAYCRMGRISDTDR--------WLKDMVRRGFVVDNATCTLMISTFCEKGFASRV 285

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           F   +   +            +I+ LC+ G    A  ++  M K+G  P++ ++ +++ G
Sbjct: 286 FWYFDKWVELGLKPNLINFTSLINGLCKRGSIKQAFEMLEEMVKKGWKPNVYTHTALIDG 345

Query: 184 LCKHGGCMRAYQLLEEGIQF-GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           LCK G   +A++L  + ++   Y P+ HTY  ++ G C E  L +A  +L  M  +  V 
Sbjct: 346 LCKKGWTEKAFRLFLKLVRSDDYKPNVHTYTSMIHGYCKEDKLNRAEMLLSRMKEQGLVP 405

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
            T+     +       N  +   ++  M +     ++ T N  I+  CK GR  EA K+L
Sbjct: 406 NTKTYTCLIDGHSKAGNFEKAYELMDLMGKEGFSANIFTYNAFIDSLCKKGRFLEACKLL 465

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
                    A D VT+T +I  L      +EAL + +  M + G  P + TYN ++    
Sbjct: 466 KKGFRLGLQA-DTVTYTILISELCRRADTREAL-VFFSKMFKAGVQPDMHTYNTLIAAFS 523

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
           R RR+EE++++F   +G+G+V    TY  +I G C    +  A +F++ +       D+ 
Sbjct: 524 RQRRMEESEKLFAEAVGLGLVPTKETYTSMICGYCRDRNVSLALKFFNRMSDHGCTPDSL 583

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
            Y A+I GLC+  K+ EA      +VD G++P  V    +    CK      A  IL  +
Sbjct: 584 TYGALISGLCKESKLDEACQLYEAMVDKGLSPCEVTRLTLAYEYCKQDDSATAMVILERL 643

Query: 483 RKN 485
            K 
Sbjct: 644 DKK 646



 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 108/450 (24%), Positives = 206/450 (45%), Gaps = 19/450 (4%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C + R+ +  +   DM  RG V +  + T +I  +C  G     +  FD+    G+ PN 
Sbjct: 242 CRMGRISDTDRWLKDMVRRGFVVDNATCTLMISTFCEKGFASRVFWYFDKWVELGLKPNL 301

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           + ++ L+ G+ +   +++A    F++ E M  ++    N      L+D LC++G+  + F
Sbjct: 302 INFTSLINGLCKRGSIKQA----FEMLEEMV-KKGWKPNVYTHTALIDGLCKKGWTEKAF 356

Query: 125 RIAEDMPQGKSVNEEF-ACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           R+   + +             MI   C+  + + A  ++  M+++GL P+  +Y  ++ G
Sbjct: 357 RLFLKLVRSDDYKPNVHTYTSMIHGYCKEDKLNRAEMLLSRMKEQGLVPNTKTYTCLIDG 416

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
             K G   +AY+L++   + G+  +  TY   ++ LC +    +A K+L+          
Sbjct: 417 HSKAGNFEKAYELMDLMGKEGFSANIFTYNAFIDSLCKKGRFLEACKLLKKGFRLGLQAD 476

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
           T    I +  LC   +  E L     M +   QPD+ T NT+I  F +  R+EE+ K+  
Sbjct: 477 TVTYTILISELCRRADTREALVFFSKMFKAGVQPDMHTYNTLIAAFSRQRRMEESEKLFA 536

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           + V G    P   T+T++I G      +  AL   +  M   G +P  +TY A++ GL +
Sbjct: 537 EAV-GLGLVPTKETYTSMICGYCRDRNVSLALK-FFNRMSDHGCTPDSLTYGALISGLCK 594

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA----KRFWDDIVWPSNIH 419
             +++EA +++  M+  G+     T   +    C+ +    A    +R  D  +W   ++
Sbjct: 595 ESKLDEACQLYEAMVDKGLSPCEVTRLTLAYEYCKQDDSATAMVILERL-DKKLWIRTVN 653

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449
                  +I+ LC   K+  AV F ++L+D
Sbjct: 654 ------TLIRKLCSERKVGMAVLFFHKLLD 677



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 103/408 (25%), Positives = 181/408 (44%), Gaps = 23/408 (5%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEM-RHCG 59
           ++ LC    + +A ++  +M  +G  PNV ++T LI G C+ G  + A+++F ++ R   
Sbjct: 308 INGLCKRGSIKQAFEMLEEMVKKGWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSDD 367

Query: 60  VLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGY 119
             PN  TY+ ++ G  +   + RA +L+     RMK E+ L  N   +  L+D   + G 
Sbjct: 368 YKPNVHTYTSMIHGYCKEDKLNRAEMLL----SRMK-EQGLVPNTKTYTCLIDGHSKAGN 422

Query: 120 VNEVFRIAEDM-PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
             + + + + M  +G S N  F     IDSLC+ GR   A +++    + GL    V+Y 
Sbjct: 423 FEKAYELMDLMGKEGFSAN-IFTYNAFIDSLCKKGRFLEACKLLKKGFRLGLQADTVTYT 481

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQ----- 233
            ++  LC+      A     +  + G  P  HTY  L+     +  +E++ K+       
Sbjct: 482 ILISELCRRADTREALVFFSKMFKAGVQPDMHTYNTLIAAFSRQRRMEESEKLFAEAVGL 541

Query: 234 FMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMG 293
            ++  K+   + IC       C  +N +  L     M    C PD +T   +I+G CK  
Sbjct: 542 GLVPTKETYTSMIC-----GYCRDRNVSLALKFFNRMSDHGCTPDSLTYGALISGLCKES 596

Query: 294 RIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVT 353
           +++EA ++   MV  K  +P  VT  T+ +          A+ +L ++  +      I T
Sbjct: 597 KLDEACQLYEAMV-DKGLSPCEVTRLTLAYEYCKQDDSATAMVILERLDKKL----WIRT 651

Query: 354 YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ 401
            N ++R L   R+V  A   F+ +L      D  T         ESN+
Sbjct: 652 VNTLIRKLCSERKVGMAVLFFHKLLDKDQNVDRVTLTAFTTACYESNK 699



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 80/333 (24%), Positives = 134/333 (40%), Gaps = 25/333 (7%)

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQF-GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
           ++V  L    G M A       I F  +      Y V      G  + E+A +V+  M+ 
Sbjct: 110 TVVASLASEAGSMVALSFFNWAIGFPKFRYFMRFYIVCATSFIGNENFERAHEVMDCMV- 168

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
                         R    I    E +N+++ M        V TLN V     +MG +  
Sbjct: 169 --------------RVFAEIGKFQEAVNMVIEMENHGLVLTVRTLNCVTGVAGEMGLVGY 214

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           A  V ++M     C PD+V++  +      +GRI +    L + M +RG+     T   +
Sbjct: 215 AENVFDEMRVRGVC-PDSVSYKLMAIAYCRMGRISDTDRWL-KDMVRRGFVVDNATCTLM 272

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV---W 414
           +               F+  + +G+  +   +  +I+GLC+   + +A    +++V   W
Sbjct: 273 ISTFCEKGFASRVFWYFDKWVELGLKPNLINFTSLINGLCKRGSIKQAFEMLEEMVKKGW 332

Query: 415 PSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG-VTPNIVCYNVVIDGACKLSMKR 473
             N+   Y + A+I GLC+ G   +A     +LV S    PN+  Y  +I G CK     
Sbjct: 333 KPNV---YTHTALIDGLCKKGWTEKAFRLFLKLVRSDDYKPNVHTYTSMIHGYCKEDKLN 389

Query: 474 EAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
            A  +L  M++ GL P+  T+  L   H   GN
Sbjct: 390 RAEMLLSRMKEQGLVPNTKTYTCLIDGHSKAGN 422


>gi|297738205|emb|CBI27406.3| unnamed protein product [Vitis vinifera]
          Length = 821

 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 125/488 (25%), Positives = 222/488 (45%), Gaps = 17/488 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M   C +  V  A   F  M   G +P+V SY  L+HG C  G M+ A +  ++M + GV
Sbjct: 277 MSGFCKMGSVDVAKSFFCMMIKYGLLPDVYSYNILLHGLCVAGSMEEALEFTNDMENHGV 336

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TY++L  G      +  A    +K+ +RM     L+ +   +  L+   C+ G +
Sbjct: 337 EPDIVTYNILANGFRILGLISGA----WKVVQRMLLN-GLNPDLVTYTILICGHCQMGNI 391

Query: 121 NEVFRIAEDM-PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
            E F++ E M  QG  ++       ++ SLC+SGR   A  +++ M   GL P L++Y+ 
Sbjct: 392 EESFKLKEKMLSQGLKLSI-VTYTVLLSSLCKSGRIDEAVILLHEMEVIGLKPDLLTYS- 449

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
                   G    A +L EE       P+      ++ GL  +  + +A+     +    
Sbjct: 450 -------RGAVEEAIELYEEMCSKRIYPNSFVCSAIISGLFEKGAISEAQMYFDSVTKSD 502

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
             +   + NI +     + N  E +     +++    P ++T N++I GFCK G++ EA+
Sbjct: 503 VAEEIILYNIMIDGYAKLGNIGEAVRSYKQIIEKGISPTIVTFNSLIYGFCKKGKLAEAV 562

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           K+L D +      P +VT+TT++ G    G +    ++L++ M  +   P  +TY  V++
Sbjct: 563 KLL-DTIKVHGLVPTSVTYTTLMNGYCEEGDMHSMFDMLHE-MEAKAIKPTQITYTVVVK 620

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
           GL +  R+ E+ ++   M   G+  D  TY  VI   C+++ L +A +  + ++  S   
Sbjct: 621 GLCKEGRLHESVQLLKYMYARGLFPDQITYNTVIQSFCKAHDLQKAFQLHNQMLQHSLQP 680

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
               Y  +I GLC  G + +A   L  L D  +    V Y  +I   C     + A    
Sbjct: 681 SPVTYNVLINGLCVYGNLKDADRLLVTLQDQSIRLTKVAYTTIIKAHCAKGDVQNALVFF 740

Query: 480 REMRKNGL 487
            +M + G 
Sbjct: 741 HQMVERGF 748



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 128/503 (25%), Positives = 226/503 (44%), Gaps = 62/503 (12%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC  SR+ +A     +       P+VVS+  L+ G+C+ G +DVA   F  M   G+
Sbjct: 242 IDGLCRQSRLQDAVTFLRETGGEEFGPSVVSFNALMSGFCKMGSVDVAKSFFCMMIKYGL 301

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           LP+  +Y++L+ G                                        LC  G +
Sbjct: 302 LPDVYSYNILLHG----------------------------------------LCVAGSM 321

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRS-GRNHGASRVVYVMRKRGLTPSLVSYNS 179
            E      DM +   V  +    +++ +  R  G   GA +VV  M   GL P LV+Y  
Sbjct: 322 EEALEFTNDM-ENHGVEPDIVTYNILANGFRILGLISGAWKVVQRMLLNGLNPDLVTYTI 380

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++ G C+ G    +++L E+ +  G   S  TY VL+  LC    +++A  +L  M    
Sbjct: 381 LICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLLSSLCKSGRIDEAVILLHEM---- 436

Query: 240 DVDRTRICNIYLRALCLIKNPTE-LLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
                 +  +    L   +   E  + +   M   +  P+    + +I+G  + G I EA
Sbjct: 437 -----EVIGLKPDLLTYSRGAVEEAIELYEEMCSKRIYPNSFVCSAIISGLFEKGAISEA 491

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
            ++  D V     A + + +  +I G   +G I EA+    Q++ ++G SP IVT+N+++
Sbjct: 492 -QMYFDSVTKSDVAEEIILYNIMIDGYAKLGNIGEAVRSYKQII-EKGISPTIVTFNSLI 549

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQL----DEAKRFWDDIVW 414
            G  +  ++ EA ++ + +   G+V  S TY  +++G CE   +    D         + 
Sbjct: 550 YGFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLMNGYCEEGDMHSMFDMLHEMEAKAIK 609

Query: 415 PSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKRE 474
           P+ I     Y  ++KGLC+ G++HE+V  L  +   G+ P+ + YN VI   CK    ++
Sbjct: 610 PTQI----TYTVVVKGLCKEGRLHESVQLLKYMYARGLFPDQITYNTVIQSFCKAHDLQK 665

Query: 475 AYQILREMRKNGLNPDAVTWRIL 497
           A+Q+  +M ++ L P  VT+ +L
Sbjct: 666 AFQLHNQMLQHSLQPSPVTYNVL 688



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 123/407 (30%), Positives = 202/407 (49%), Gaps = 29/407 (7%)

Query: 99  DLSVNNAAFANLVDSLCREGYVNEVFR--IAEDMPQGKSVNEEFACGHMIDSLCRSGRNH 156
           +L V+ A + +L+ +L     + +V+    A  +PQ +  N       +ID LCR  R  
Sbjct: 198 NLQVSIATYNSLLYNLRHTDIMWDVYNEIKASGVPQNEYTNPI-----LIDGLCRQSRLQ 252

Query: 157 GASRVVYVMRKRG---LTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYK 213
            A   V  +R+ G     PS+VS+N+++ G CK G    A       I++G LP  ++Y 
Sbjct: 253 DA---VTFLRETGGEEFGPSVVSFNALMSGFCKMGSVDVAKSFFCMMIKYGLLPDVYSYN 309

Query: 214 VLVEGLCGESDLEKARKVLQFMLS---KKDVDRTRICNIYLRALCLIKNPTELLNVLVFM 270
           +L+ GLC    +E+A +    M +   + D+    I     R L LI    +   V+  M
Sbjct: 310 ILLHGLCVAGSMEEALEFTNDMENHGVEPDIVTYNILANGFRILGLISGAWK---VVQRM 366

Query: 271 LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR 330
           L     PD++T   +I G C+MG IEE+ K+   M++        VT+T ++  L   GR
Sbjct: 367 LLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQGL-KLSIVTYTVLLSSLCKSGR 425

Query: 331 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYA 390
           I EA+ LL++ M   G  P ++TY+   RG      VEEA E++  M    +  +S   +
Sbjct: 426 IDEAVILLHE-MEVIGLKPDLLTYS---RG-----AVEEAIELYEEMCSKRIYPNSFVCS 476

Query: 391 IVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 450
            +I GL E   + EA+ ++D +       +  +Y  MI G  + G I EAV    ++++ 
Sbjct: 477 AIISGLFEKGAISEAQMYFDSVTKSDVAEEIILYNIMIDGYAKLGNIGEAVRSYKQIIEK 536

Query: 451 GVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           G++P IV +N +I G CK     EA ++L  ++ +GL P +VT+  L
Sbjct: 537 GISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTTL 583



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 117/493 (23%), Positives = 221/493 (44%), Gaps = 21/493 (4%)

Query: 5   CGLSRVGEAHKLFF---DMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVL 61
           C  SR    H   F    MK      ++ +Y +L++    T   D+ + V++E++  GV 
Sbjct: 176 CAYSRAEMVHDALFVLAKMKVLNLQVSIATYNSLLYNLRHT---DIMWDVYNEIKASGVP 232

Query: 62  PNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVN 121
            N  T  +L+ G+ R   ++ A   +     R    E+   +  +F  L+   C+ G V+
Sbjct: 233 QNEYTNPILIDGLCRQSRLQDAVTFL-----RETGGEEFGPSVVSFNALMSGFCKMGSVD 287

Query: 122 EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
                   M +   + + ++   ++  LC +G    A      M   G+ P +V+YN + 
Sbjct: 288 VAKSFFCMMIKYGLLPDVYSYNILLHGLCVAGSMEEALEFTNDMENHGVEPDIVTYNILA 347

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
           +G    G    A+++++  +  G  P   TY +L+ G C   ++E++ K+ + MLS+   
Sbjct: 348 NGFRILGLISGAWKVVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQGLK 407

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
                  + L +LC      E + +L  M     +PD++T +         G +EEA+++
Sbjct: 408 LSIVTYTVLLSSLCKSGRIDEAVILLHEMEVIGLKPDLLTYSR--------GAVEEAIEL 459

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
             +M + +   P++   + II GL   G I EA  + +  + +   +  I+ YN ++ G 
Sbjct: 460 YEEMCSKRI-YPNSFVCSAIISGLFEKGAISEA-QMYFDSVTKSDVAEEIILYNIMIDGY 517

Query: 362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
            +L  + EA   +  ++  G+     T+  +I G C+  +L EA +  D I     +  +
Sbjct: 518 AKLGNIGEAVRSYKQIIEKGISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIKVHGLVPTS 577

Query: 422 YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
             Y  ++ G C  G +H     L+E+    + P  + Y VV+ G CK     E+ Q+L+ 
Sbjct: 578 VTYTTLMNGYCEEGDMHSMFDMLHEMEAKAIKPTQITYTVVVKGLCKEGRLHESVQLLKY 637

Query: 482 MRKNGLNPDAVTW 494
           M   GL PD +T+
Sbjct: 638 MYARGLFPDQITY 650



 Score =  151 bits (381), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 125/489 (25%), Positives = 214/489 (43%), Gaps = 58/489 (11%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C +  + E+ KL   M S+G   ++V+YT L+   C++G +D A  +  EM   G+ P+ 
Sbjct: 386 CQMGNIEESFKLKEKMLSQGLKLSIVTYTVLLSSLCKSGRIDEAVILLHEMEVIGLKPDL 445

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           LTYS   RG      VE A     +L+E M  +  +  N+   + ++  L  +G ++E  
Sbjct: 446 LTYS---RGA-----VEEA----IELYEEMCSKR-IYPNSFVCSAIISGLFEKGAISEAQ 492

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
              + + +     E      MID   + G    A R    + ++G++P++V++NS+++G 
Sbjct: 493 MYFDSVTKSDVAEEIILYNIMIDGYAKLGNIGEAVRSYKQIIEKGISPTIVTFNSLIYGF 552

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
           CK G    A +LL+     G +P+  TY  L+ G C E D+     +L  M +K      
Sbjct: 553 CKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLMNGYCEEGDMHSMFDMLHEMEAKA----- 607

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
                                          +P  IT   V+ G CK GR+ E++++L  
Sbjct: 608 ------------------------------IKPTQITYTVVVKGLCKEGRLHESVQLLKY 637

Query: 305 MVA-GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           M A G F  PD +T+ T+I        +Q+A  L  Q M Q    P  VTYN ++ GL  
Sbjct: 638 MYARGLF--PDQITYNTVIQSFCKAHDLQKAFQLHNQ-MLQHSLQPSPVTYNVLINGLCV 694

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV---WPSNIHD 420
              +++A  +   +    +      Y  +I   C    +  A  F+  +V   +  +I D
Sbjct: 695 YGNLKDADRLLVTLQDQSIRLTKVAYTTIIKAHCAKGDVQNALVFFHQMVERGFEVSIRD 754

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              Y+A+I  LC+   I +A  F   ++  G+ P+     V+++   +       ++I  
Sbjct: 755 ---YSAVINRLCKRNLITDAKFFFCMMLTHGIPPDQDICLVMLNAFHRSGDPNSVFEIFA 811

Query: 481 EMRKNGLNP 489
            M K GL P
Sbjct: 812 MMIKCGLLP 820



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 105/209 (50%), Gaps = 13/209 (6%)

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQV-MPQRGYSPGIVTYNAV 357
           +KVLN  V+         T+ ++++ L +   + +  N +    +PQ  Y+  I+     
Sbjct: 194 MKVLNLQVS-------IATYNSLLYNLRHTDIMWDVYNEIKASGVPQNEYTNPIL----- 241

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 417
           + GL R  R+++A        G        ++  ++ G C+   +D AK F+  ++    
Sbjct: 242 IDGLCRQSRLQDAVTFLRETGGEEFGPSVVSFNALMSGFCKMGSVDVAKSFFCMMIKYGL 301

Query: 418 IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQ 477
           + D Y Y  ++ GLC +G + EA+ F  ++ + GV P+IV YN++ +G   L +   A++
Sbjct: 302 LPDVYSYNILLHGLCVAGSMEEALEFTNDMENHGVEPDIVTYNILANGFRILGLISGAWK 361

Query: 478 ILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           +++ M  NGLNPD VT+ IL   H   GN
Sbjct: 362 VVQRMLLNGLNPDLVTYTILICGHCQMGN 390


>gi|297830278|ref|XP_002883021.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328861|gb|EFH59280.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 504

 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 112/416 (26%), Positives = 194/416 (46%), Gaps = 3/416 (0%)

Query: 90  LWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSL 149
           L+ RM     L  +   F  L+  + +    + V  + E M         + C  +++ +
Sbjct: 69  LFTRMVHSRPLP-SIVDFTRLLSVIAKMKRFDVVISLFEQMQILGISPVLYTCNIVMNCV 127

Query: 150 CRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSE 209
           CRS +   AS  +  M K G  P LV++ S++HG C       A  L ++ +  G+ P+ 
Sbjct: 128 CRSSQPCRASCFLGKMMKLGFEPDLVTFTSLLHGFCHWNRIEDALALFDQIVGMGFRPNV 187

Query: 210 HTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVF 269
            TY  L+  LC    L  A ++   M            N  +  LC I   ++   +L  
Sbjct: 188 VTYTTLIHCLCKNRHLNHAVEIFNQMGDNGIRPNVVTYNSLVSGLCEIGRWSDAAWLLRD 247

Query: 270 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG 329
           M++   QP+VIT   +I+ F K+G+I EA ++   M+      PD  T+T +I GL   G
Sbjct: 248 MMKRGIQPNVITFTALIDAFVKVGKIMEAKELYKVMIQMS-VYPDVFTYTALINGLCTYG 306

Query: 330 RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTY 389
           R+ EA  + Y +M   GY P  VTY  ++ G  + +RVE+  ++F  M   G+VA++ TY
Sbjct: 307 RLDEARQMFY-LMESNGYYPNEVTYTTLIHGFCKSKRVEDGTKIFYEMSQKGLVANTITY 365

Query: 390 AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449
            ++I G C   + D A+  ++ +       D   Y  ++ GLC +G + +A+     +  
Sbjct: 366 TVLIQGYCLVGRPDVAQEVFNQMGSRRAPPDIRTYNVLLDGLCYNGYVEKALMIFKYMRK 425

Query: 450 SGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
             +  NIV Y ++I G CK+    +A+ +   +   G+ P+ +T+  +      RG
Sbjct: 426 REMDINIVTYTIIIQGMCKVGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRG 481



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 99/346 (28%), Positives = 173/346 (50%), Gaps = 7/346 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C  +R+ +A  LF  +   G  PNVV+YTTLIH  C+   ++ A ++F++M   G+ PN
Sbjct: 162 FCHWNRIEDALALFDQIVGMGFRPNVVTYTTLIHCLCKNRHLNHAVEIFNQMGDNGIRPN 221

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY+ LV G+        A  L+  + +R      +  N   F  L+D+  + G + E 
Sbjct: 222 VVTYNSLVSGLCEIGRWSDAAWLLRDMMKR-----GIQPNVITFTALIDAFVKVGKIMEA 276

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             + + M Q     + F    +I+ LC  GR   A ++ Y+M   G  P+ V+Y +++HG
Sbjct: 277 KELYKVMIQMSVYPDVFTYTALINGLCTYGRLDEARQMFYLMESNGYYPNEVTYTTLIHG 336

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK        ++  E  Q G + +  TY VL++G C     + A++V   M S++    
Sbjct: 337 FCKSKRVEDGTKIFYEMSQKGLVANTITYTVLIQGYCLVGRPDVAQEVFNQMGSRRAPPD 396

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
            R  N+ L  LC      + L +  +M + +   +++T   +I G CK+G++E+A  +  
Sbjct: 397 IRTYNVLLDGLCYNGYVEKALMIFKYMRKREMDINIVTYTIIIQGMCKVGKVEDAFDLFC 456

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSP 349
            + + K   P+ +T+TT+I G    G I EA + L++ M + G+ P
Sbjct: 457 SLFS-KGMKPNVITYTTMISGFCRRGFIHEA-DALFKKMKEDGFLP 500



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 99/387 (25%), Positives = 183/387 (47%), Gaps = 7/387 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M+ +C  S+   A      M   G  P++V++T+L+HG+C    ++ A  +FD++   G 
Sbjct: 124 MNCVCRSSQPCRASCFLGKMMKLGFEPDLVTFTSLLHGFCHWNRIEDALALFDQIVGMGF 183

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +TY+ L+  + + R +  A     +++ +M  +  +  N   + +LV  LC  G  
Sbjct: 184 RPNVVTYTTLIHCLCKNRHLNHA----VEIFNQMG-DNGIRPNVVTYNSLVSGLCEIGRW 238

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           ++   +  DM +            +ID+  + G+   A  +  VM +  + P + +Y ++
Sbjct: 239 SDAAWLLRDMMKRGIQPNVITFTALIDAFVKVGKIMEAKELYKVMIQMSVYPDVFTYTAL 298

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++GLC +G    A Q+       GY P+E TY  L+ G C    +E   K+   M  K  
Sbjct: 299 INGLCTYGRLDEARQMFYLMESNGYYPNEVTYTTLIHGFCKSKRVEDGTKIFYEMSQKGL 358

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           V  T    + ++  CL+  P     V   M   +  PD+ T N +++G C  G +E+AL 
Sbjct: 359 VANTITYTVLIQGYCLVGRPDVAQEVFNQMGSRRAPPDIRTYNVLLDGLCYNGYVEKALM 418

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +   M   +    + VT+T II G+  VG++++A +L   +   +G  P ++TY  ++ G
Sbjct: 419 IFKYMRKREM-DINIVTYTIIIQGMCKVGKVEDAFDLFCSLF-SKGMKPNVITYTTMISG 476

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADST 387
             R   + EA  +F  M   G + + +
Sbjct: 477 FCRRGFIHEADALFKKMKEDGFLPNES 503


>gi|222422989|dbj|BAH19478.1| AT2G06000 [Arabidopsis thaliana]
          Length = 536

 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 105/361 (29%), Positives = 176/361 (48%), Gaps = 3/361 (0%)

Query: 148 SLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLP 207
           SLC++G +  A ++   M+  G++P+      +V    + G    A  LL +   F    
Sbjct: 112 SLCKAGLHDLAGQMFECMKSDGVSPNNRLLGFLVSSFAEKGKLHFATALLLQ--SFEVEG 169

Query: 208 SEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVL 267
                  L+  L     +E A K+    L  +  + T+  NI +R LC +    + L +L
Sbjct: 170 CCMVVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKAEKALELL 229

Query: 268 VFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLN 327
             M    C+PD++T NT+I GFCK   + +A ++  D+ +G  C+PD VT+T++I G   
Sbjct: 230 GVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISGYCK 289

Query: 328 VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADST 387
            G+++EA +LL  ++ + G  P  VT+N ++ G  +   +  A+E+   M+  G   D  
Sbjct: 290 AGKMREASSLLDDML-RLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVV 348

Query: 388 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYEL 447
           T+  +IDG C   Q+ +  R W+++       + + Y+ +I  LC   ++ +A   L +L
Sbjct: 349 TFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQL 408

Query: 448 VDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGND 507
               + P    YN VIDG CK     EA  I+ EM K    PD +T+ IL   H  +G  
Sbjct: 409 ASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRM 468

Query: 508 F 508
           F
Sbjct: 469 F 469



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 112/469 (23%), Positives = 208/469 (44%), Gaps = 60/469 (12%)

Query: 31  SYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKL 90
           +Y  L    C+ G  D+A ++F+ M+  GV PN+     LV        +  A  L+ + 
Sbjct: 105 TYNLLTRSLCKAGLHDLAGQMFECMKSDGVSPNNRLLGFLVSSFAEKGKLHFATALLLQS 164

Query: 91  WERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC 150
           +E   E   + VN+     L+++L +   V +  ++ ++  + +S N+            
Sbjct: 165 FEV--EGCCMVVNS-----LLNTLVKLDRVEDAMKLFDEHLRFQSCNDT----------- 206

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
                                    ++N ++ GLC  G   +A +LL     FG  P   
Sbjct: 207 ------------------------KTFNILIRGLCGVGKAEKALELLGVMSGFGCEPDIV 242

Query: 211 TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNI-------YLRALCLIKNPTEL 263
           TY  L++G C  ++L KA ++       KDV    +C+         +   C      E 
Sbjct: 243 TYNTLIQGFCKSNELNKASEMF------KDVKSGSVCSPDVVTYTSMISGYCKAGKMREA 296

Query: 264 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF 323
            ++L  ML+    P  +T N +++G+ K G +  A ++   M++   C PD VTFT++I 
Sbjct: 297 SSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFG-CFPDVVTFTSLID 355

Query: 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 383
           G   VG++ +   L ++ M  RG  P   TY+ ++  L    R+ +A+E+   +    ++
Sbjct: 356 GYCRVGQVSQGFRL-WEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASKDII 414

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
                Y  VIDG C++ +++EA    +++       D   +  +I G C  G++ EAV  
Sbjct: 415 PQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSI 474

Query: 444 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAY---QILREMRKNGLNP 489
            +++V  G +P+ +  + ++    K  M +EAY   QI R+ + N + P
Sbjct: 475 FHKMVAIGCSPDKITVSSLLSCLLKAGMAKEAYHLNQIARKGQSNNVVP 523



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 94/363 (25%), Positives = 178/363 (49%), Gaps = 12/363 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ L  L RV +A KLF +        +  ++  LI G C  G+ + A ++   M   G 
Sbjct: 178 LNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKAEKALELLGVMSGFGC 237

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TY+ L++G  ++ ++ +A+    ++++ +K     S +   + +++   C+ G +
Sbjct: 238 EPDIVTYNTLIQGFCKSNELNKAS----EMFKDVKSGSVCSPDVVTYTSMISGYCKAGKM 293

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E   + +DM +            ++D   ++G    A  +   M   G  P +V++ S+
Sbjct: 294 REASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSL 353

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G C+ G   + ++L EE    G  P+  TY +L+  LC E+ L KAR++L  + SK  
Sbjct: 354 IDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASKDI 413

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           + +  + N  +   C      E   ++  M + +C+PD IT   +I G C  GR+ EA+ 
Sbjct: 414 IPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVS 473

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIV-----TYN 355
           + + MVA   C+PD +T ++++  LL  G  +EA +L    + ++G S  +V     T N
Sbjct: 474 IFHKMVAIG-CSPDKITVSSLLSCLLKAGMAKEAYHL--NQIARKGQSNNVVPPETKTAN 530

Query: 356 AVL 358
           A L
Sbjct: 531 ATL 533


>gi|15225031|ref|NP_178657.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|42570711|ref|NP_973429.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216767|sp|Q9ZUE9.1|PP149_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g06000
 gi|4006835|gb|AAC95177.1| hypothetical protein [Arabidopsis thaliana]
 gi|110736272|dbj|BAF00106.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250896|gb|AEC05990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|330250897|gb|AEC05991.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 536

 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 105/361 (29%), Positives = 176/361 (48%), Gaps = 3/361 (0%)

Query: 148 SLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLP 207
           SLC++G +  A ++   M+  G++P+      +V    + G    A  LL +   F    
Sbjct: 112 SLCKAGLHDLAGQMFECMKSDGVSPNNRLLGFLVSSFAEKGKLHFATALLLQ--SFEVEG 169

Query: 208 SEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVL 267
                  L+  L     +E A K+    L  +  + T+  NI +R LC +    + L +L
Sbjct: 170 CCMVVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKAEKALELL 229

Query: 268 VFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLN 327
             M    C+PD++T NT+I GFCK   + +A ++  D+ +G  C+PD VT+T++I G   
Sbjct: 230 GVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISGYCK 289

Query: 328 VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADST 387
            G+++EA +LL  ++ + G  P  VT+N ++ G  +   +  A+E+   M+  G   D  
Sbjct: 290 AGKMREASSLLDDML-RLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVV 348

Query: 388 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYEL 447
           T+  +IDG C   Q+ +  R W+++       + + Y+ +I  LC   ++ +A   L +L
Sbjct: 349 TFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQL 408

Query: 448 VDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGND 507
               + P    YN VIDG CK     EA  I+ EM K    PD +T+ IL   H  +G  
Sbjct: 409 ASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRM 468

Query: 508 F 508
           F
Sbjct: 469 F 469



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 112/469 (23%), Positives = 208/469 (44%), Gaps = 60/469 (12%)

Query: 31  SYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKL 90
           +Y  L    C+ G  D+A ++F+ M+  GV PN+     LV        +  A  L+ + 
Sbjct: 105 TYNLLTRSLCKAGLHDLAGQMFECMKSDGVSPNNRLLGFLVSSFAEKGKLHFATALLLQS 164

Query: 91  WERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC 150
           +E   E   + VN+     L+++L +   V +  ++ ++  + +S N+            
Sbjct: 165 FEV--EGCCMVVNS-----LLNTLVKLDRVEDAMKLFDEHLRFQSCNDT----------- 206

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
                                    ++N ++ GLC  G   +A +LL     FG  P   
Sbjct: 207 ------------------------KTFNILIRGLCGVGKAEKALELLGVMSGFGCEPDIV 242

Query: 211 TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN-------IYLRALCLIKNPTEL 263
           TY  L++G C  ++L KA ++       KDV    +C+         +   C      E 
Sbjct: 243 TYNTLIQGFCKSNELNKASEMF------KDVKSGSVCSPDVVTYTSMISGYCKAGKMREA 296

Query: 264 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF 323
            ++L  ML+    P  +T N +++G+ K G +  A ++   M++   C PD VTFT++I 
Sbjct: 297 SSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFG-CFPDVVTFTSLID 355

Query: 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 383
           G   VG++ +   L ++ M  RG  P   TY+ ++  L    R+ +A+E+   +    ++
Sbjct: 356 GYCRVGQVSQGFRL-WEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASKDII 414

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
                Y  VIDG C++ +++EA    +++       D   +  +I G C  G++ EAV  
Sbjct: 415 PQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSI 474

Query: 444 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAY---QILREMRKNGLNP 489
            +++V  G +P+ +  + ++    K  M +EAY   QI R+ + N + P
Sbjct: 475 FHKMVAIGCSPDKITVSSLLSCLLKAGMAKEAYHLNQIARKGQSNNVVP 523



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 94/363 (25%), Positives = 178/363 (49%), Gaps = 12/363 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ L  L RV +A KLF +        +  ++  LI G C  G+ + A ++   M   G 
Sbjct: 178 LNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKAEKALELLGVMSGFGC 237

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TY+ L++G  ++ ++ +A+    ++++ +K     S +   + +++   C+ G +
Sbjct: 238 EPDIVTYNTLIQGFCKSNELNKAS----EMFKDVKSGSVCSPDVVTYTSMISGYCKAGKM 293

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E   + +DM +            ++D   ++G    A  +   M   G  P +V++ S+
Sbjct: 294 REASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSL 353

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G C+ G   + ++L EE    G  P+  TY +L+  LC E+ L KAR++L  + SK  
Sbjct: 354 IDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASKDI 413

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           + +  + N  +   C      E   ++  M + +C+PD IT   +I G C  GR+ EA+ 
Sbjct: 414 IPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVS 473

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIV-----TYN 355
           + + MVA   C+PD +T ++++  LL  G  +EA +L    + ++G S  +V     T N
Sbjct: 474 IFHKMVAIG-CSPDKITVSSLLSCLLKAGMAKEAYHL--NQIARKGQSNNVVPLETKTAN 530

Query: 356 AVL 358
           A L
Sbjct: 531 ATL 533


>gi|414878623|tpg|DAA55754.1| TPA: hypothetical protein ZEAMMB73_281441 [Zea mays]
          Length = 891

 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 128/509 (25%), Positives = 234/509 (45%), Gaps = 63/509 (12%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSR-GHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCG 59
           +D LC   ++ EA K+  ++K+R G  P++ SY+ LIH +C+ G ++ A+   ++M   G
Sbjct: 216 IDGLCKEMKLKEAEKVL-EIKTRHGSAPDLYSYSYLIHSHCKMGNLEKAWYHVEDMVSHG 274

Query: 60  VLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGY 119
           +  N    + L++  LR   +    ++ F+ +  +    D  + N A    +D+ C+ G 
Sbjct: 275 IEINCYIVAYLLQ-CLRKLGMVSEVIVHFQKFRDLGVHLDGVLYNIA----MDAYCKLGN 329

Query: 120 VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           +NE  ++  +M  G  V ++     +I+  C  G    A +V   M K  + P +V+YN 
Sbjct: 330 MNEAVKLLNEMMAGSLVPDKIHYTCLINGYCLKGETENAWQVFEEMLKANIKPDVVTYNI 389

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           +  G  ++G  M+ + +LE  +  G  P+  TY + + G C   +L +A +VL  ++ ++
Sbjct: 390 LASGYSRNGLVMKVFDILEHMMDQGLEPNSLTYGIAIAGFCRGGNLSEA-EVLFNIVEER 448

Query: 240 DVDRTRI------------------------------------CNIYLRALCLIKNPTEL 263
            +D   +                                    C+  +  LC  +   E 
Sbjct: 449 GIDNINVLYGSMVCGYLHSGWTDHAYMLFLRVAKQGNMVDRLSCSKLINGLCRDEKVGEA 508

Query: 264 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF 323
             V   ML+    PDVI+ + +I+ +C+   +  A    +DMV       D + +T ++ 
Sbjct: 509 STVCKMMLEKNVVPDVISYSKLISAYCQTRDMHNARLWFHDMVERGL--SDVIVYTVLMN 566

Query: 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL------------RGLFRLRRV---- 367
           G   VGR+QEA  L  Q M   G  P +V Y  +L            +G+ + RR     
Sbjct: 567 GYCKVGRLQEACELFVQ-MINLGIKPDVVAYTVLLDGHLKETLQQGWQGIAKERRTFFLR 625

Query: 368 EEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAM 427
            + K + N M  + +  D T Y ++IDG C++  L+EA+  +D+++    I D + Y A+
Sbjct: 626 TKHKVLLNSMKDMEIEPDVTCYTVLIDGRCKAEYLEEARGLFDEMLAKGLIPDVHTYTAL 685

Query: 428 IKGLCRSGKIHEAVHFLYELVDSGVTPNI 456
           I G C  G+I +A     E++  G+ P+I
Sbjct: 686 INGYCSQGEIAKAEDLFQEMIAKGMKPDI 714



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 125/496 (25%), Positives = 233/496 (46%), Gaps = 40/496 (8%)

Query: 3   QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYK------VFDEMR 56
           + C  S VG        M   G   +V  +++ I G C  G+ D+AY       V  E+ 
Sbjct: 150 KTCATSHVG--------MIEMGVKLDVHGFSSFIIGLCDCGKFDLAYNMVRRYAVLQEIS 201

Query: 57  HCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCR 116
              V   ++ Y++++ G+ +   ++ A  ++      +K     + +  +++ L+ S C+
Sbjct: 202 QERVPIEAMAYNMVIDGLCKEMKLKEAEKVL-----EIKTRHGSAPDLYSYSYLIHSHCK 256

Query: 117 EGYVNEVFRIAEDM-PQGKSVNEEFACGHMIDSLCRSGRNHG--ASRVVYVMRKRGLTPS 173
            G + + +   EDM   G  +N    C +++  L +  R  G  +  +V+  + R L   
Sbjct: 257 MGNLEKAWYHVEDMVSHGIEIN----C-YIVAYLLQCLRKLGMVSEVIVHFQKFRDLGVH 311

Query: 174 L--VSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKV 231
           L  V YN  +   CK G    A +LL E +    +P +  Y  L+ G C + + E A +V
Sbjct: 312 LDGVLYNIAMDAYCKLGNMNEAVKLLNEMMAGSLVPDKIHYTCLINGYCLKGETENAWQV 371

Query: 232 LQFMLS---KKDVDRTRI-CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVIN 287
            + ML    K DV    I  + Y R   ++K    + ++L  M+    +P+ +T    I 
Sbjct: 372 FEEMLKANIKPDVVTYNILASGYSRNGLVMK----VFDILEHMMDQGLEPNSLTYGIAIA 427

Query: 288 GFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGY 347
           GFC+ G + EA +VL ++V  +      V + +++ G L+ G    A  L  +V  Q G 
Sbjct: 428 GFCRGGNLSEA-EVLFNIVEERGIDNINVLYGSMVCGYLHSGWTDHAYMLFLRVAKQ-GN 485

Query: 348 SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKR 407
               ++ + ++ GL R  +V EA  V   ML   VV D  +Y+ +I   C++  +  A+ 
Sbjct: 486 MVDRLSCSKLINGLCRDEKVGEASTVCKMMLEKNVVPDVISYSKLISAYCQTRDMHNARL 545

Query: 408 FWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGAC 467
           ++ D+V    + D  VY  ++ G C+ G++ EA     ++++ G+ P++V Y V++DG  
Sbjct: 546 WFHDMV-ERGLSDVIVYTVLMNGYCKVGRLQEACELFVQMINLGIKPDVVAYTVLLDGHL 604

Query: 468 KLSMKREAYQILREMR 483
           K ++++    I +E R
Sbjct: 605 KETLQQGWQGIAKERR 620



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 98/436 (22%), Positives = 193/436 (44%), Gaps = 50/436 (11%)

Query: 106 AFANLVDSLCREGYVNEVFR------IAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGAS 159
            F++ +  LC  G  +  +       + +++ Q +   E  A   +ID LC+  +   A 
Sbjct: 170 GFSSFIIGLCDCGKFDLAYNMVRRYAVLQEISQERVPIEAMAYNMVIDGLCKEMKLKEAE 229

Query: 160 RVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGL 219
           +V+ +  + G  P L SY+ ++H  CK G   +A+  +E+ +  G   + +    L++ L
Sbjct: 230 KVLEIKTRHGSAPDLYSYSYLIHSHCKMGNLEKAWYHVEDMVSHGIEINCYIVAYLLQCL 289

Query: 220 CGESDLEKARKVLQFMLSKKDVD---RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQ 276
                L    +V+      +D+       + NI + A C + N  E + +L  M+     
Sbjct: 290 ---RKLGMVSEVIVHFQKFRDLGVHLDGVLYNIAMDAYCKLGNMNEAVKLLNEMMAGSLV 346

Query: 277 PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALN 336
           PD I    +ING+C  G  E A +V  +M+      PD VT+  +  G    G + +  +
Sbjct: 347 PDKIHYTCLINGYCLKGETENAWQVFEEMLKANI-KPDVVTYNILASGYSRNGLVMKVFD 405

Query: 337 LLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGV-------------- 382
           +L  +M Q G  P  +TY   + G  R   + EA+ +FN +   G+              
Sbjct: 406 ILEHMMDQ-GLEPNSLTYGIAIAGFCRGGNLSEAEVLFNIVEERGIDNINVLYGSMVCGY 464

Query: 383 ---------------------VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
                                + D  + + +I+GLC   ++ EA      ++  + + D 
Sbjct: 465 LHSGWTDHAYMLFLRVAKQGNMVDRLSCSKLINGLCRDEKVGEASTVCKMMLEKNVVPDV 524

Query: 422 YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
             Y+ +I   C++  +H A  + +++V+ G++ +++ Y V+++G CK+   +EA ++  +
Sbjct: 525 ISYSKLISAYCQTRDMHNARLWFHDMVERGLS-DVIVYTVLMNGYCKVGRLQEACELFVQ 583

Query: 482 MRKNGLNPDAVTWRIL 497
           M   G+ PD V + +L
Sbjct: 584 MINLGIKPDVVAYTVL 599



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/248 (22%), Positives = 115/248 (46%), Gaps = 16/248 (6%)

Query: 268 VFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN-----DMVAGKFCAPDAVTFTTII 322
           V M++   + DV   ++ I G C  G+ + A  ++        ++ +    +A+ +  +I
Sbjct: 157 VGMIEMGVKLDVHGFSSFIIGLCDCGKFDLAYNMVRRYAVLQEISQERVPIEAMAYNMVI 216

Query: 323 FGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGV 382
            GL    +++EA  +L ++  + G +P + +Y+ ++    ++  +E+A      M+  G+
Sbjct: 217 DGLCKEMKLKEAEKVL-EIKTRHGSAPDLYSYSYLIHSHCKMGNLEKAWYHVEDMVSHGI 275

Query: 383 VADSTTYAIVIDGLCESNQLDEA----KRFWDDIVWPSNIH-DNYVYAAMIKGLCRSGKI 437
             +    A ++  L +   + E     ++F D       +H D  +Y   +   C+ G +
Sbjct: 276 EINCYIVAYLLQCLRKLGMVSEVIVHFQKFRD-----LGVHLDGVLYNIAMDAYCKLGNM 330

Query: 438 HEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           +EAV  L E++   + P+ + Y  +I+G C       A+Q+  EM K  + PD VT+ IL
Sbjct: 331 NEAVKLLNEMMAGSLVPDKIHYTCLINGYCLKGETENAWQVFEEMLKANIKPDVVTYNIL 390

Query: 498 DKLHGNRG 505
              +   G
Sbjct: 391 ASGYSRNG 398



 Score = 43.9 bits (102), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 6/93 (6%)

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHF------LYELVDSGVTPNIVCYNVVIDGACKLSMKR 473
           D + +++ I GLC  GK   A +       L E+    V    + YN+VIDG CK    +
Sbjct: 167 DVHGFSSFIIGLCDCGKFDLAYNMVRRYAVLQEISQERVPIEAMAYNMVIDGLCKEMKLK 226

Query: 474 EAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           EA ++L    ++G  PD  ++  L   H   GN
Sbjct: 227 EAEKVLEIKTRHGSAPDLYSYSYLIHSHCKMGN 259


>gi|302784232|ref|XP_002973888.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
 gi|300158220|gb|EFJ24843.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
          Length = 399

 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 107/366 (29%), Positives = 187/366 (51%), Gaps = 13/366 (3%)

Query: 31  SYTTLIHGYCRTGEMDVAYKVFDEM-RHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFK 89
           +Y  L+  +C  GE+  A  +  EM +  G+ P    Y+  V  + ++  V  A     +
Sbjct: 20  TYFVLVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEA----ME 75

Query: 90  LWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSL 149
           + + MK+      +   F  L+  LC+ G ++E  ++ ++M +            +I+ L
Sbjct: 76  VVKNMKDGA-CKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGL 134

Query: 150 CRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQ-FGYLPS 208
             +GR+  A   V VM+    TP   +YN+I+HG CK G   RAY  LEE  Q  G  P 
Sbjct: 135 SSAGRSGEA---VLVMQGMTTTPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPD 191

Query: 209 EHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC-NIYLRALCLIKNPTELLNVL 267
             TY +L+ GLC  S+L KA ++LQ M+ +KD   + +  N  +   C  ++      +L
Sbjct: 192 TFTYSILINGLCKSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELL 251

Query: 268 VFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLN 327
             ML+  C PDV+T +T+I+G C+ G +++   +L  MV+ + C PD VT+T ++ GL  
Sbjct: 252 SSMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVS-RGCKPDVVTYTVLVTGLCK 310

Query: 328 VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADST 387
            G++ EA  L+ + M + G +P  VTY+ V  GL ++ +++ A ++   +   G + D  
Sbjct: 311 AGKMVEACRLVKR-MLEDGCTPNAVTYSLVFDGLCKIDKLDMANDLLTSIRDKGRITDVV 369

Query: 388 TYAIVI 393
            +  ++
Sbjct: 370 AFEALL 375



 Score =  168 bits (426), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 106/396 (26%), Positives = 182/396 (45%), Gaps = 39/396 (9%)

Query: 103 NNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFAC-GHMIDSLCRSGRNHGASRV 161
           +N  +  LV + C  G +     +  +M Q   +    +     + +LC+SG+   A  V
Sbjct: 17  DNYTYFVLVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEV 76

Query: 162 VYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCG 221
           V  M+     P +V++N+++ GLCK G    A Q+L+E  + G+  +  TY  L+ GL  
Sbjct: 77  VKNMKDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSS 136

Query: 222 ESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVIT 281
                +A  V+Q M +                                       PD  T
Sbjct: 137 AGRSGEAVLVMQGMTT--------------------------------------TPDTQT 158

Query: 282 LNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQV 341
            N +I+GFCK G I+ A   L +M     C+PD  T++ +I GL     +++A  LL ++
Sbjct: 159 YNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLRKADELLQEM 218

Query: 342 MPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ 401
           + ++     +V +N ++ G  + + ++ A+E+ + ML  G   D  TY+ +IDGLC    
Sbjct: 219 IGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLCRCGD 278

Query: 402 LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNV 461
           +D+     + +V      D   Y  ++ GLC++GK+ EA   +  +++ G TPN V Y++
Sbjct: 279 VDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDGCTPNAVTYSL 338

Query: 462 VIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           V DG CK+     A  +L  +R  G   D V +  L
Sbjct: 339 VFDGLCKIDKLDMANDLLTSIRDKGRITDVVAFEAL 374



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 104/421 (24%), Positives = 188/421 (44%), Gaps = 50/421 (11%)

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           L ++ TY VLVR      +++ A      L   M+++  ++   + +   V +LC+ G V
Sbjct: 15  LFDNYTYFVLVRAHCLAGELQAA----MDLLREMEQQPGMAPTPSMYNFFVHALCKSGKV 70

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E   + ++M  G    +      +I  LC++GR   A +V+  M + G   +LV+YN++
Sbjct: 71  PEAMEVVKNMKDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTL 130

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++GL   G    A  L+ +G+     P   TY  ++ G C   ++++A   L+ M  +  
Sbjct: 131 INGLSSAGRSGEAV-LVMQGMT--TTPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQR-- 185

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                             C PD  T + +ING CK   + +A +
Sbjct: 186 --------------------------------AGCSPDTFTYSILINGLCKSSNLRKADE 213

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +L +M+  K C    V F T++ G      +  A  LL   M + G +P +VTY+ ++ G
Sbjct: 214 LLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSS-MLEHGCAPDVVTYSTIIDG 272

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA----KRFWDDIVWPS 416
           L R   V++   +   M+  G   D  TY +++ GLC++ ++ EA    KR  +D   P+
Sbjct: 273 LCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDGCTPN 332

Query: 417 NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAY 476
            +     Y+ +  GLC+  K+  A   L  + D G   ++V +  ++    K  + R A+
Sbjct: 333 AV----TYSLVFDGLCKIDKLDMANDLLTSIRDKGRITDVVAFEALLLSVKKRLLDRAAF 388

Query: 477 Q 477
           Q
Sbjct: 389 Q 389



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 95/357 (26%), Positives = 168/357 (47%), Gaps = 47/357 (13%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   +V EA ++  +MK     P+VV++ TLI G C+ G +D A +V DEM   G   N
Sbjct: 64  LCKSGKVPEAMEVVKNMKDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAAN 123

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY+ L+ G+        A ++M    + M    D    NA    ++   C+ G ++  
Sbjct: 124 LVTYNTLINGLSSAGRSGEAVLVM----QGMTTTPDTQTYNA----IIHGFCKSGEIDRA 175

Query: 124 FRIAEDMPQGKSVNEE-FACGHMIDSLCRSGRNHGASRVVYVM-RKRGLTPSLVSYNSIV 181
           +   E+M Q    + + F    +I+ LC+S     A  ++  M  ++    S+V++N++V
Sbjct: 176 YGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLRKADELLQEMIGRKDCCASVVAFNTLV 235

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
            G CK     RA +LL   ++ G  P   TY  +++GLC   D++K   +L+ M+S+   
Sbjct: 236 DGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRG-- 293

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
                                            C+PDV+T   ++ G CK G++ EA ++
Sbjct: 294 ---------------------------------CKPDVVTYTVLVTGLCKAGKMVEACRL 320

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
           +  M+    C P+AVT++ +  GL  + ++  A +LL  +   +G    +V + A+L
Sbjct: 321 VKRMLEDG-CTPNAVTYSLVFDGLCKIDKLDMANDLLTSIR-DKGRITDVVAFEALL 375



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 130/265 (49%), Gaps = 10/265 (3%)

Query: 6   GLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRH-CGVLPNS 64
           GLS  G + +    M+     P+  +Y  +IHG+C++GE+D AY   +EM+   G  P++
Sbjct: 133 GLSSAGRSGEAVLVMQGMTTTPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDT 192

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
            TYS+L+ G+ ++ ++ +A+    +L + M   +D   +  AF  LVD  C+   ++   
Sbjct: 193 FTYSILINGLCKSSNLRKAD----ELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRAR 248

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
            +   M +     +      +ID LCR G       ++  M  RG  P +V+Y  +V GL
Sbjct: 249 ELLSSMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGL 308

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
           CK G  + A +L++  ++ G  P+  TY ++ +GLC    L+ A  +L  +      D+ 
Sbjct: 309 CKAGKMVEACRLVKRMLEDGCTPNAVTYSLVFDGLCKIDKLDMANDLLTSIR-----DKG 363

Query: 245 RICNIYLRALCLIKNPTELLNVLVF 269
           RI ++      L+     LL+   F
Sbjct: 364 RITDVVAFEALLLSVKKRLLDRAAF 388



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 62/116 (53%), Gaps = 5/116 (4%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C    +  A +L   M   G  P+VV+Y+T+I G CR G++D  + + ++M   G 
Sbjct: 235 VDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGC 294

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCR 116
            P+ +TY+VLV G+ +   +  A     +L +RM  E+  + N   ++ + D LC+
Sbjct: 295 KPDVVTYTVLVTGLCKAGKMVEA----CRLVKRML-EDGCTPNAVTYSLVFDGLCK 345



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 52/93 (55%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    V +   L   M SRG  P+VV+YT L+ G C+ G+M  A ++   M   G 
Sbjct: 270 IDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDGC 329

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWER 93
            PN++TYS++  G+ +   ++ AN L+  + ++
Sbjct: 330 TPNAVTYSLVFDGLCKIDKLDMANDLLTSIRDK 362



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 1/81 (1%)

Query: 418 IHDNYVYAAMIKGLCRSGKIHEAVHFLYEL-VDSGVTPNIVCYNVVIDGACKLSMKREAY 476
           + DNY Y  +++  C +G++  A+  L E+    G+ P    YN  +   CK     EA 
Sbjct: 15  LFDNYTYFVLVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAM 74

Query: 477 QILREMRKNGLNPDAVTWRIL 497
           ++++ M+     PD VT+  L
Sbjct: 75  EVVKNMKDGACKPDVVTFNTL 95


>gi|224144893|ref|XP_002325452.1| predicted protein [Populus trichocarpa]
 gi|222862327|gb|EEE99833.1| predicted protein [Populus trichocarpa]
          Length = 864

 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 141/531 (26%), Positives = 234/531 (44%), Gaps = 45/531 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C L  +  A  L  DM+ +  VPNVV+Y+++I+GY + G +DVA ++  +M    +
Sbjct: 303 IDGYCKLGDMDGAESLLRDMEKKQVVPNVVTYSSIINGYTKKGMLDVAVRIMKKMLDQNI 362

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLM---------------------FKLWERMKEEED 99
           +PN+  Y+ L+ G L+    + A  L                       K   +M+E E 
Sbjct: 363 MPNAYIYATLIDGHLKAGKQDAAVDLYNEMKLNGLEENSFIVDAFINNLKRGRKMEEAEG 422

Query: 100 LS---------VNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC 150
           L          ++   + +L+D   + G  +  F +AE M +     +  A   +I+ L 
Sbjct: 423 LCKYMMSKGLLLDRVNYTSLMDGFFKTGRESAAFTMAEKMAETGIKFDVVAYNVLINGLL 482

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
           R G+ + A  V   +R+ GL P   +YN++++  CK G    A +L  E      +P+  
Sbjct: 483 RLGK-YDAESVYSGIRELGLAPDRATYNTMINAYCKQGKLENAIKLWNEMKGHSVMPNSI 541

Query: 211 TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM 270
           T  +LV GL    + E+A  VL  ML         I    L A    +    +L +   +
Sbjct: 542 TCNILVGGLSKAGETERAIDVLNEMLLWGICPNVTIHRALLNACSKCERADTILQMHKRL 601

Query: 271 LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR 330
           +    + +    N++I   C +G  + A  VLN+M      A D VT+  +I G      
Sbjct: 602 VGMGLKANREVYNSLITVLCGLGMTKRATLVLNNMTKEGISA-DTVTYNALIHGHFKSSH 660

Query: 331 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYA 390
           I++AL   Y  M   G SPGI TYN +L GL     + +A E+ + M   G+  D++ Y 
Sbjct: 661 IEKAL-ATYTQMLNEGVSPGIRTYNLLLGGLLAAGLMSKAYEILSKMKDSGLDPDASLYN 719

Query: 391 IVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 450
            +I G  +     EA +F+ ++V    +     Y  +I+   + GK+ +A   L E+   
Sbjct: 720 TLISGHGKIGNKKEAIKFYCEMVTKGLVPKTSTYNVLIEDFAKVGKMDQARELLNEMQVR 779

Query: 451 GVTPNIVCYNVVIDGACKLS------------MKREAYQILREMRKNGLNP 489
            V PN   Y+++I G C LS             + EA  +  EM + G  P
Sbjct: 780 RVPPNSSTYDILICGWCNLSKQPELDRISKKTYRTEARTLFAEMNEKGFVP 830



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 130/508 (25%), Positives = 231/508 (45%), Gaps = 47/508 (9%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D L    +  EA  +F  +     +PN ++YT +I GYC+ G+MD A  +  +M    V
Sbjct: 268 IDGLFKAGKSDEAEAMFCTLAKLNCIPNNITYTAMIDGYCKLGDMDGAESLLRDMEKKQV 327

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +PN +TYS ++ G  +   ++ A  +M K+      ++++  N   +A L+D   + G  
Sbjct: 328 VPNVVTYSSIINGYTKKGMLDVAVRIMKKML-----DQNIMPNAYIYATLIDGHLKAGKQ 382

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +    +  +M         F     I++L R  +   A  +   M  +GL    V+Y S+
Sbjct: 383 DAAVDLYNEMKLNGLEENSFIVDAFINNLKRGRKMEEAEGLCKYMMSKGLLLDRVNYTSL 442

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G  K G    A+ + E+  + G       Y VL+ GL                L K D
Sbjct: 443 MDGFFKTGRESAAFTMAEKMAETGIKFDVVAYNVLINGL--------------LRLGKYD 488

Query: 241 VDRTRICNIY--LRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
            +     ++Y  +R L L                    PD  T NT+IN +CK G++E A
Sbjct: 489 AE-----SVYSGIRELGL-------------------APDRATYNTMINAYCKQGKLENA 524

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
           +K+ N+M  G    P+++T   ++ GL   G  + A+++L + M   G  P +  + A+L
Sbjct: 525 IKLWNEM-KGHSVMPNSITCNILVGGLSKAGETERAIDVLNE-MLLWGICPNVTIHRALL 582

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
               +  R +   ++   ++G+G+ A+   Y  +I  LC       A    +++      
Sbjct: 583 NACSKCERADTILQMHKRLVGMGLKANREVYNSLITVLCGLGMTKRATLVLNNMTKEGIS 642

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI 478
            D   Y A+I G  +S  I +A+    ++++ GV+P I  YN+++ G     +  +AY+I
Sbjct: 643 ADTVTYNALIHGHFKSSHIEKALATYTQMLNEGVSPGIRTYNLLLGGLLAAGLMSKAYEI 702

Query: 479 LREMRKNGLNPDAVTWRILDKLHGNRGN 506
           L +M+ +GL+PDA  +  L   HG  GN
Sbjct: 703 LSKMKDSGLDPDASLYNTLISGHGKIGN 730



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 117/481 (24%), Positives = 222/481 (46%), Gaps = 20/481 (4%)

Query: 26  VPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANV 85
           VP +  +  LI+ +  TG +   + ++ EM  CGVLPN  T+++LV    +   +  A  
Sbjct: 8   VPTLPLWNRLIYQFNATGLVSQVWDLYSEMLSCGVLPNVFTHNILVHAWCKMGHLSLALD 67

Query: 86  LMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHM 145
           L+  +        D+ V+   +   +   C++G  N+ F     M +  +  + F C  +
Sbjct: 68  LIRNV--------DIDVDTVTYNTAIWGFCQQGLANQGFGFLSIMVKKDTFFDSFTCNIL 119

Query: 146 IDSLCRSGRNHGASRVVYVM--------RKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLL 197
           +   CR G       V+  +            L P+LV+Y +++   CK  G   A  L 
Sbjct: 120 VKGFCRIGSVKYGEWVMDNLIDDMNDDDGTTNLEPNLVTYTTLISAYCKQHGLSEALSLY 179

Query: 198 EEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC-NIYLRALCL 256
           EE I  G+LP   TY  ++ GLC    L +A+ +L+ M  K  V+   +   I + +L  
Sbjct: 180 EEMISDGFLPDVVTYSSIINGLCKRGMLTEAKALLREM-DKMGVNPNHVVYAILVDSLFK 238

Query: 257 IKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAV 316
             +  E       M+      D++   T+I+G  K G+ +EA + +   +A   C P+ +
Sbjct: 239 AGSAWESFIYQSQMIVCGVSFDLVVCTTLIDGLFKAGKSDEA-EAMFCTLAKLNCIPNNI 297

Query: 317 TFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNC 376
           T+T +I G   +G +  A +LL   M ++   P +VTY++++ G  +   ++ A  +   
Sbjct: 298 TYTAMIDGYCKLGDMDGAESLLRD-MEKKQVVPNVVTYSSIINGYTKKGMLDVAVRIMKK 356

Query: 377 MLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGK 436
           ML   ++ ++  YA +IDG  ++ + D A   ++++       ++++  A I  L R  K
Sbjct: 357 MLDQNIMPNAYIYATLIDGHLKAGKQDAAVDLYNEMKLNGLEENSFIVDAFINNLKRGRK 416

Query: 437 IHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRI 496
           + EA      ++  G+  + V Y  ++DG  K   +  A+ +  +M + G+  D V + +
Sbjct: 417 MEEAEGLCKYMMSKGLLLDRVNYTSLMDGFFKTGRESAAFTMAEKMAETGIKFDVVAYNV 476

Query: 497 L 497
           L
Sbjct: 477 L 477



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 111/477 (23%), Positives = 217/477 (45%), Gaps = 14/477 (2%)

Query: 28  NVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLM 87
           + V+Y T I G+C+ G  +  +     M       +S T ++LV+G  R   V+    +M
Sbjct: 77  DTVTYNTAIWGFCQQGLANQGFGFLSIMVKKDTFFDSFTCNILVKGFCRIGSVKYGEWVM 136

Query: 88  FKLWERMKEEE---DLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGH 144
             L + M +++   +L  N   +  L+ + C++  ++E   + E+M     + +      
Sbjct: 137 DNLIDDMNDDDGTTNLEPNLVTYTTLISAYCKQHGLSEALSLYEEMISDGFLPDVVTYSS 196

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAY----QLLEEG 200
           +I+ LC+ G    A  ++  M K G+ P+ V Y  +V  L K G    ++    Q++  G
Sbjct: 197 IINGLCKRGMLTEAKALLREMDKMGVNPNHVVYAILVDSLFKAGSAWESFIYQSQMIVCG 256

Query: 201 IQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNP 260
           + F  +        L++GL      ++A  +   +     +         +   C + + 
Sbjct: 257 VSFDLV----VCTTLIDGLFKAGKSDEAEAMFCTLAKLNCIPNNITYTAMIDGYCKLGDM 312

Query: 261 TELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTT 320
               ++L  M + Q  P+V+T +++ING+ K G ++ A++++  M+      P+A  + T
Sbjct: 313 DGAESLLRDMEKKQVVPNVVTYSSIINGYTKKGMLDVAVRIMKKMLDQNI-MPNAYIYAT 371

Query: 321 IIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI 380
           +I G L  G+ Q+A   LY  M   G        +A +  L R R++EEA+ +   M+  
Sbjct: 372 LIDGHLKAGK-QDAAVDLYNEMKLNGLEENSFIVDAFINNLKRGRKMEEAEGLCKYMMSK 430

Query: 381 GVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEA 440
           G++ D   Y  ++DG  ++ +   A    + +       D   Y  +I GL R GK ++A
Sbjct: 431 GLLLDRVNYTSLMDGFFKTGRESAAFTMAEKMAETGIKFDVVAYNVLINGLLRLGK-YDA 489

Query: 441 VHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
                 + + G+ P+   YN +I+  CK      A ++  EM+ + + P+++T  IL
Sbjct: 490 ESVYSGIRELGLAPDRATYNTMINAYCKQGKLENAIKLWNEMKGHSVMPNSITCNIL 546



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 97/346 (28%), Positives = 166/346 (47%), Gaps = 15/346 (4%)

Query: 169 GLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE-GIQFGYLPSEHTYKVLVEGLCGESDLEK 227
           G+ P++ ++N +VH  CK G    A  L+    I    +    TY   + G C +    +
Sbjct: 41  GVLPNVFTHNILVHAWCKMGHLSLALDLIRNVDIDVDTV----TYNTAIWGFCQQGLANQ 96

Query: 228 ARKVLQFMLSKKDVDRTRICNIYLRALCLI---KNPTELLNVLVFMLQ-----TQCQPDV 279
               L  M+ K     +  CNI ++  C I   K    +++ L+  +      T  +P++
Sbjct: 97  GFGFLSIMVKKDTFFDSFTCNILVKGFCRIGSVKYGEWVMDNLIDDMNDDDGTTNLEPNL 156

Query: 280 ITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLY 339
           +T  T+I+ +CK   + EAL +  +M++  F  PD VT+++II GL   G + EA  LL 
Sbjct: 157 VTYTTLISAYCKQHGLSEALSLYEEMISDGFL-PDVVTYSSIINGLCKRGMLTEAKALLR 215

Query: 340 QVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCES 399
           + M + G +P  V Y  ++  LF+     E+    + M+  GV  D      +IDGL ++
Sbjct: 216 E-MDKMGVNPNHVVYAILVDSLFKAGSAWESFIYQSQMIVCGVSFDLVVCTTLIDGLFKA 274

Query: 400 NQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCY 459
            + DEA+  +  +   + I +N  Y AMI G C+ G +  A   L ++    V PN+V Y
Sbjct: 275 GKSDEAEAMFCTLAKLNCIPNNITYTAMIDGYCKLGDMDGAESLLRDMEKKQVVPNVVTY 334

Query: 460 NVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
           + +I+G  K  M   A +I+++M    + P+A  +  L   H   G
Sbjct: 335 SSIINGYTKKGMLDVAVRIMKKMLDQNIMPNAYIYATLIDGHLKAG 380



 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 96/363 (26%), Positives = 167/363 (46%), Gaps = 24/363 (6%)

Query: 164 VMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGES 223
           ++R   + P+L  +N +++     G   + + L  E +  G LP+  T+ +LV   C   
Sbjct: 1   MIRTHHIVPTLPLWNRLIYQFNATGLVSQVWDLYSEMLSCGVLPNVFTHNILVHAWCKMG 60

Query: 224 DLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLN 283
            L  A  +++ +    DVD T   N  +   C      +    L  M++     D  T N
Sbjct: 61  HLSLALDLIRNV--DIDVD-TVTYNTAIWGFCQQGLANQGFGFLSIMVKKDTFFDSFTCN 117

Query: 284 TVINGFCKMGRIEEALKVLNDMV-------AGKFCAPDAVTFTTIIFGLLNVGRIQEALN 336
            ++ GFC++G ++    V+++++             P+ VT+TT+I        + EAL+
Sbjct: 118 ILVKGFCRIGSVKYGEWVMDNLIDDMNDDDGTTNLEPNLVTYTTLISAYCKQHGLSEALS 177

Query: 337 LLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 396
           L Y+ M   G+ P +VTY++++ GL +   + EAK +   M  +GV  +   YAI++D L
Sbjct: 178 L-YEEMISDGFLPDVVTYSSIINGLCKRGMLTEAKALLREMDKMGVNPNHVVYAILVDSL 236

Query: 397 CESNQLDEAKRFWDDIVWPSNI------HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 450
            +      A   W+  ++ S +       D  V   +I GL ++GK  EA      L   
Sbjct: 237 FK------AGSAWESFIYQSQMIVCGVSFDLVVCTTLIDGLFKAGKSDEAEAMFCTLAKL 290

Query: 451 GVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN-DFG 509
              PN + Y  +IDG CKL     A  +LR+M K  + P+ VT+  +   +  +G  D  
Sbjct: 291 NCIPNNITYTAMIDGYCKLGDMDGAESLLRDMEKKQVVPNVVTYSSIINGYTKKGMLDVA 350

Query: 510 LRI 512
           +RI
Sbjct: 351 VRI 353


>gi|297851460|ref|XP_002893611.1| hypothetical protein ARALYDRAFT_336125 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297339453|gb|EFH69870.1| hypothetical protein ARALYDRAFT_336125 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 814

 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 119/476 (25%), Positives = 224/476 (47%), Gaps = 17/476 (3%)

Query: 13  AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVR 72
           A ++   MK RG      ++  ++  Y R G++  A KV   M+  GV PN L  +  + 
Sbjct: 229 ARRVLVLMKRRGIYRTPEAFLRVMVSYSRAGQLRDALKVLTLMQRAGVEPNLLICNTTID 288

Query: 73  GVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQ 132
             +R   +E+A     +  ERM +   +  N   +  ++   C    V E   + +DMP 
Sbjct: 289 VFVRANRLEKA----LRFLERM-QVVGIVPNVVTYNCMIRGYCDLHRVEEAIELLDDMPS 343

Query: 133 GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKR-GLTPSLVSYNSIVHGLCKHGGCM 191
              + ++ +   ++  LC+  R      ++  M K  GL    V+YN+++H L KH    
Sbjct: 344 KGCLPDKVSYYTIMGYLCKEKRIVEVRDLMKKMAKEHGLVRDQVTYNTLIHMLTKHDHAD 403

Query: 192 RAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD-----VDRTRI 246
            A   L++  + G+   +  Y  +V  LC E  + +A+ ++  MLSK       V  T +
Sbjct: 404 EALWFLKDAEEKGFRIDKVGYSAIVHALCKEGRMSEAKDLINEMLSKGHCPPDVVTYTAV 463

Query: 247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV 306
            N      C +    +   +L  M     +P+ ++   ++NG C+ G+  EA +++N M 
Sbjct: 464 VN----GFCRLGEVDKAKKLLQIMHTHGYKPNTVSYTALLNGLCRTGKSLEAREMMN-MS 518

Query: 307 AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 366
             ++ +P+++T++ ++ GL   G++ EA +++ + M  +G+ PG V  N +L+ L R  R
Sbjct: 519 EEQWWSPNSITYSVLMHGLRKEGKLSEACDVVRE-MVLKGFFPGPVEINLLLQSLCRDGR 577

Query: 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAA 426
             EA++     L  G   +   +  VI G C++++LD A    DD+   +   D + Y  
Sbjct: 578 THEARKFMEECLNKGCAINVVNFTTVIHGFCQNDELDAALSVLDDMYLINKHADVFTYTT 637

Query: 427 MIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
           ++  L + G+I EA   + +++  G+ P  V Y  VI   C++    +   IL +M
Sbjct: 638 LVDALGKKGRIAEATELMKKMLHKGIDPTPVTYRTVIHRYCQMEKVDDLVAILEKM 693



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 110/405 (27%), Positives = 195/405 (48%), Gaps = 10/405 (2%)

Query: 106 AFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVM 165
           AF  ++ S  R G + +  ++   M +         C   ID   R+ R   A R +  M
Sbjct: 247 AFLRVMVSYSRAGQLRDALKVLTLMQRAGVEPNLLICNTTIDVFVRANRLEKALRFLERM 306

Query: 166 RKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDL 225
           +  G+ P++V+YN ++ G C       A +LL++    G LP + +Y  ++  LC E  +
Sbjct: 307 QVVGIVPNVVTYNCMIRGYCDLHRVEEAIELLDDMPSKGCLPDKVSYYTIMGYLCKEKRI 366

Query: 226 EKARKVLQFMLSKKDVDRTRIC-NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNT 284
            + R +++ M  +  + R ++  N  +  L    +  E L  L    +   + D +  + 
Sbjct: 367 VEVRDLMKKMAKEHGLVRDQVTYNTLIHMLTKHDHADEALWFLKDAEEKGFRIDKVGYSA 426

Query: 285 VINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ 344
           +++  CK GR+ EA  ++N+M++   C PD VT+T ++ G   +G + +A  LL Q+M  
Sbjct: 427 IVHALCKEGRMSEAKDLINEMLSKGHCPPDVVTYTAVVNGFCRLGEVDKAKKLL-QIMHT 485

Query: 345 RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 404
            GY P  V+Y A+L GL R  +  EA+E+ N         +S TY++++ GL +  +L E
Sbjct: 486 HGYKPNTVSYTALLNGLCRTGKSLEAREMMNMSEEQWWSPNSITYSVLMHGLRKEGKLSE 545

Query: 405 AKRFWDDIV----WPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYN 460
           A     ++V    +P  +  N     +++ LCR G+ HEA  F+ E ++ G   N+V + 
Sbjct: 546 ACDVVREMVLKGFFPGPVEINL----LLQSLCRDGRTHEARKFMEECLNKGCAINVVNFT 601

Query: 461 VVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
            VI G C+      A  +L +M     + D  T+  L    G +G
Sbjct: 602 TVIHGFCQNDELDAALSVLDDMYLINKHADVFTYTTLVDALGKKG 646



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 117/500 (23%), Positives = 230/500 (46%), Gaps = 9/500 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D     +R+ +A +    M+  G VPNVV+Y  +I GYC    ++ A ++ D+M   G 
Sbjct: 287 IDVFVRANRLEKALRFLERMQVVGIVPNVVTYNCMIRGYCDLHRVEEAIELLDDMPSKGC 346

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           LP+ ++Y  ++  + + + +     LM    ++M +E  L  +   +  L+  L +  + 
Sbjct: 347 LPDKVSYYTIMGYLCKEKRIVEVRDLM----KKMAKEHGLVRDQVTYNTLIHMLTKHDHA 402

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRG-LTPSLVSYNS 179
           +E     +D  +     ++     ++ +LC+ GR   A  ++  M  +G   P +V+Y +
Sbjct: 403 DEALWFLKDAEEKGFRIDKVGYSAIVHALCKEGRMSEAKDLINEMLSKGHCPPDVVTYTA 462

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           +V+G C+ G   +A +LL+     GY P+  +Y  L+ GLC      +AR+++     + 
Sbjct: 463 VVNGFCRLGEVDKAKKLLQIMHTHGYKPNTVSYTALLNGLCRTGKSLEAREMMNMSEEQW 522

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
               +   ++ +  L      +E  +V+  M+     P  + +N ++   C+ GR  EA 
Sbjct: 523 WSPNSITYSVLMHGLRKEGKLSEACDVVREMVLKGFFPGPVEINLLLQSLCRDGRTHEAR 582

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           K + + +  K CA + V FTT+I G      +  AL++L  +     ++  + TY  ++ 
Sbjct: 583 KFMEECL-NKGCAINVVNFTTVIHGFCQNDELDAALSVLDDMYLINKHA-DVFTYTTLVD 640

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
            L +  R+ EA E+   ML  G+     TY  VI   C+  ++D+     + ++      
Sbjct: 641 ALGKKGRIAEATELMKKMLHKGIDPTPVTYRTVIHRYCQMEKVDDLVAILEKMILRQKC- 699

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
              +Y  +I+ LC  GK+ EA   L +++ +    +      +++G  K+ +   AY++ 
Sbjct: 700 -KTIYNQVIEKLCGLGKLEEADKLLGKVLRTASRSDAKTCYALMEGYLKIGVPLLAYKVA 758

Query: 480 REMRKNGLNPDAVTWRILDK 499
             M    L PD      L K
Sbjct: 759 CRMFNRNLIPDVKMCEKLSK 778


>gi|168007580|ref|XP_001756486.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162692525|gb|EDQ78882.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 528

 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 114/470 (24%), Positives = 215/470 (45%), Gaps = 44/470 (9%)

Query: 27  PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVL 86
           PN +    LI  Y R  +   A+ +F++       P    ++ L+  ++ + + ERA ++
Sbjct: 30  PNTL--VKLITAYGRGNKSGDAFDLFNQAESFACSPTVHAFTKLIDILVNSGEFERAELV 87

Query: 87  MFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMI 146
             KL ++        ++  A+  L+    R G ++    +  +M    S  +E+  G ++
Sbjct: 88  YKKLVQK-----GCQLDRFAYNVLIRYFGRSGQLDSAMEMFREMKIKGSEPDEYTYGFLV 142

Query: 147 DSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL 206
           ++L ++GR   A      M +RGLTP++ +YN ++    K G    A  L  E  + G+ 
Sbjct: 143 NALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQ 202

Query: 207 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 266
           PS  TY +L++ LC    +  ARK+   M                               
Sbjct: 203 PSVVTYNILLDALCSAGRVGAARKLFHKMTGDG--------------------------- 235

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
                   C PD  T +T++NG  K GR+EEA KV  +MV  +  A D V + +++  L 
Sbjct: 236 --------CSPDSYTYSTLVNGLGKSGRVEEAHKVFREMV-DRGVAVDLVNYNSLLATLA 286

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
             G +     L+ + M ++G+ P   ++N ++  L +  + + A+EVF  M+  G   D 
Sbjct: 287 KAGNMDRVWKLMKE-MSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVESGCKPDL 345

Query: 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE 446
            +Y I+ID         +A++  +++V    I +   Y ++I  L   G++ EA   L E
Sbjct: 346 ISYNILIDSYARFGDAAQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEE 405

Query: 447 LVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRI 496
           +  +G  P++V YN ++D   K    + A ++ ++M+  G+ PD +++ +
Sbjct: 406 METAGCRPDVVTYNRLMDMLGKRGENQRAARLFQQMKDKGVEPDTLSYAV 455



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 107/416 (25%), Positives = 196/416 (47%), Gaps = 7/416 (1%)

Query: 31  SYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKL 90
           +Y  LI  + R+G++D A ++F EM+  G  P+  TY  LV  + +   V+ A      +
Sbjct: 102 AYNVLIRYFGRSGQLDSAMEMFREMKIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAM 161

Query: 91  WERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC 150
            ER      L+ N   +  L+D+  + G ++    +  +M +            ++D+LC
Sbjct: 162 LER-----GLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALC 216

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
            +GR   A ++ + M   G +P   +Y+++V+GL K G    A+++  E +  G      
Sbjct: 217 SAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLV 276

Query: 211 TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM 270
            Y  L+  L    ++++  K+++ M  K         N  + AL     P     V   M
Sbjct: 277 NYNSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARM 336

Query: 271 LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR 330
           +++ C+PD+I+ N +I+ + + G   +A ++L +MV   F  P+  T+ ++I  L   G+
Sbjct: 337 VESGCKPDLISYNILIDSYARFGDAAQARQMLEEMVEAGFI-PETKTYNSLIHWLATDGQ 395

Query: 331 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYA 390
           + EA  +L + M   G  P +VTYN ++  L +    + A  +F  M   GV  D+ +YA
Sbjct: 396 VDEAFAVLEE-METAGCRPDVVTYNRLMDMLGKRGENQRAARLFQQMKDKGVEPDTLSYA 454

Query: 391 IVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE 446
           + IDGL   ++LDEA   + D+       D  +Y  +I+   R+G         +E
Sbjct: 455 VRIDGLAFDDRLDEALVLFKDMKAVGCPVDKAMYRILIRAAHRAGDTELEAQLKHE 510



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 101/377 (26%), Positives = 171/377 (45%), Gaps = 9/377 (2%)

Query: 138 EEFACG-------HMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGC 190
           E FAC         +ID L  SG    A  V   + ++G      +YN ++    + G  
Sbjct: 57  ESFACSPTVHAFTKLIDILVNSGEFERAELVYKKLVQKGCQLDRFAYNVLIRYFGRSGQL 116

Query: 191 MRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIY 250
             A ++  E    G  P E+TY  LV  L     +++AR     ML +         N+ 
Sbjct: 117 DSAMEMFREMKIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLL 176

Query: 251 LRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKF 310
           + A   +      L +   M +   QP V+T N +++  C  GR+  A K+ + M  G  
Sbjct: 177 MDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMT-GDG 235

Query: 311 CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEA 370
           C+PD+ T++T++ GL   GR++EA + +++ M  RG +  +V YN++L  L +   ++  
Sbjct: 236 CSPDSYTYSTLVNGLGKSGRVEEA-HKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRV 294

Query: 371 KEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKG 430
            ++   M   G   D+ ++  ++D L ++N+ D A+  +  +V      D   Y  +I  
Sbjct: 295 WKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVESGCKPDLISYNILIDS 354

Query: 431 LCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD 490
             R G   +A   L E+V++G  P    YN +I          EA+ +L EM   G  PD
Sbjct: 355 YARFGDAAQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCRPD 414

Query: 491 AVTWRILDKLHGNRGND 507
            VT+  L  + G RG +
Sbjct: 415 VVTYNRLMDMLGKRGEN 431



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 99/386 (25%), Positives = 171/386 (44%), Gaps = 44/386 (11%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           RV EA   F  M  RG  PN+ +Y  L+  + + G++D+A  +F EM+  G  P+ +TY+
Sbjct: 150 RVQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYN 209

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
           +                                        L+D+LC  G V    ++  
Sbjct: 210 I----------------------------------------LLDALCSAGRVGAARKLFH 229

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
            M       + +    +++ L +SGR   A +V   M  RG+   LV+YNS++  L K G
Sbjct: 230 KMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAG 289

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
              R ++L++E  + G+ P   ++  +++ L   +  + AR+V   M+           N
Sbjct: 290 NMDRVWKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVESGCKPDLISYN 349

Query: 249 IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM-VA 307
           I + +     +  +   +L  M++    P+  T N++I+     G+++EA  VL +M  A
Sbjct: 350 ILIDSYARFGDAAQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEEMETA 409

Query: 308 GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRV 367
           G  C PD VT+  ++  L   G  Q A   L+Q M  +G  P  ++Y   + GL    R+
Sbjct: 410 G--CRPDVVTYNRLMDMLGKRGENQRAAR-LFQQMKDKGVEPDTLSYAVRIDGLAFDDRL 466

Query: 368 EEAKEVFNCMLGIGVVADSTTYAIVI 393
           +EA  +F  M  +G   D   Y I+I
Sbjct: 467 DEALVLFKDMKAVGCPVDKAMYRILI 492



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 93/363 (25%), Positives = 171/363 (47%), Gaps = 42/363 (11%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           MD    + ++  A  LF +MK RG  P+VV+Y  L+   C  G +  A K+F +M   G 
Sbjct: 177 MDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGC 236

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+S TYS LV G+ ++  VE A+ +  ++ +R      ++V+   + +L+ +L + G +
Sbjct: 237 SPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDR-----GVAVDLVNYNSLLATLAKAGNM 291

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           + V+++ ++M +     + F+   ++D+L ++ +   A  V   M + G  P L+SYN +
Sbjct: 292 DRVWKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVESGCKPDLISYNIL 351

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +    + G   +A Q+LEE ++ G++P   TY  L+  L  +  +++A  VL+ M +   
Sbjct: 352 IDSYARFGDAAQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEEMET--- 408

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                             C+PDV+T N +++   K G  + A +
Sbjct: 409 --------------------------------AGCRPDVVTYNRLMDMLGKRGENQRAAR 436

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +   M   K   PD +++   I GL    R+ EAL +L++ M   G       Y  ++R 
Sbjct: 437 LFQQM-KDKGVEPDTLSYAVRIDGLAFDDRLDEAL-VLFKDMKAVGCPVDKAMYRILIRA 494

Query: 361 LFR 363
             R
Sbjct: 495 AHR 497



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 157/335 (46%), Gaps = 6/335 (1%)

Query: 164 VMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGES 223
           V   R L P+ +      +G     G   A+ L  +   F   P+ H +  L++ L    
Sbjct: 22  VAEGRPLRPNTLVKLITAYGRGNKSG--DAFDLFNQAESFACSPTVHAFTKLIDILVNSG 79

Query: 224 DLEKARKVLQFMLSKK-DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITL 282
           + E+A  V + ++ K   +DR    N+ +R           + +   M     +PD  T 
Sbjct: 80  EFERAELVYKKLVQKGCQLDRF-AYNVLIRYFGRSGQLDSAMEMFREMKIKGSEPDEYTY 138

Query: 283 NTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVM 342
             ++N   K GR++EA    + M+  +   P+  T+  ++     VG++  AL L  + M
Sbjct: 139 GFLVNALGKAGRVQEARSFFDAMLE-RGLTPNIPTYNLLMDAFRKVGQLDMALGLFAE-M 196

Query: 343 PQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQL 402
            +RG+ P +VTYN +L  L    RV  A+++F+ M G G   DS TY+ +++GL +S ++
Sbjct: 197 KRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRV 256

Query: 403 DEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVV 462
           +EA + + ++V      D   Y +++  L ++G +      + E+   G  P+   +N +
Sbjct: 257 EEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTI 316

Query: 463 IDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           +D   K +    A ++   M ++G  PD +++ IL
Sbjct: 317 MDALGKANKPDAAREVFARMVESGCKPDLISYNIL 351



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 108/238 (45%), Gaps = 11/238 (4%)

Query: 4   LCGLSRVGEAH---KLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           L  L++ G      KL  +M  +G  P+  S+ T++    +  + D A +VF  M   G 
Sbjct: 282 LATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVESGC 341

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ ++Y++L+    R  D  +A  ++ ++ E     E  + N+     L+  L  +G V
Sbjct: 342 KPDLISYNILIDSYARFGDAAQARQMLEEMVEAGFIPETKTYNS-----LIHWLATDGQV 396

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E F + E+M       +      ++D L + G N  A+R+   M+ +G+ P  +SY   
Sbjct: 397 DEAFAVLEEMETAGCRPDVVTYNRLMDMLGKRGENQRAARLFQQMKDKGVEPDTLSYAVR 456

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGL--CGESDLE-KARKVLQFM 235
           + GL        A  L ++    G    +  Y++L+      G+++LE + +   QFM
Sbjct: 457 IDGLAFDDRLDEALVLFKDMKAVGCPVDKAMYRILIRAAHRAGDTELEAQLKHESQFM 514



 Score = 44.7 bits (104), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 36/81 (44%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           MD L        A +LF  MK +G  P+ +SY   I G      +D A  +F +M+  G 
Sbjct: 422 MDMLGKRGENQRAARLFQQMKDKGVEPDTLSYAVRIDGLAFDDRLDEALVLFKDMKAVGC 481

Query: 61  LPNSLTYSVLVRGVLRTRDVE 81
             +   Y +L+R   R  D E
Sbjct: 482 PVDKAMYRILIRAAHRAGDTE 502


>gi|162460542|ref|NP_001105869.1| pentatricopeptide repeat protein [Zea mays]
 gi|95931777|gb|ABF57644.1| pentatricopeptide repeat protein [Zea mays]
          Length = 886

 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 117/488 (23%), Positives = 227/488 (46%), Gaps = 9/488 (1%)

Query: 13  AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVR 72
           A   F +M++RG  PN   +T+L+H Y   G+M  A    +EM+  G+    +TYS+L+ 
Sbjct: 270 ARATFENMRARGIEPNAFVFTSLVHAYAVAGDMRGALSCVEEMKSEGIEMTVVTYSILIS 329

Query: 73  GVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQ 132
           G  +T D + A+     L++  K + D ++N   ++N++ + C+ G ++    +  +M +
Sbjct: 330 GYGKTNDAQSAD----NLFKEAKTKLD-NLNGIIYSNIIHAHCQSGNMDRAEELVREMEE 384

Query: 133 GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKR-GLTPSLVSYNSIVHGLCKHGGCM 191
              ++      H +       ++     +V+   K  G  P+++SY  +++   K G   
Sbjct: 385 -DGIDAPIDVYHSMMHGYTVVQDEKKCLIVFERLKECGFKPTIISYGCLINLYVKVGKVP 443

Query: 192 RAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYL 251
           +A  + +E    G   +  TY +L+ G     D   A  + + M+         I N+ +
Sbjct: 444 KAIAISKEMESHGIKHNNKTYSMLINGFIHLHDFANAFSIFEDMIKSGLQPDRAIYNLLV 503

Query: 252 RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC 311
            A C + N    + +   M + + QP   T   +I GF   G ++ A   L D++    C
Sbjct: 504 EAFCKMGNMDRAIRIFERMQKERMQPSNRTFRPIIEGFAVAGDMKRAFDTL-DLMRRSGC 562

Query: 312 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK 371
           AP  +T+  +I GL+   ++++A+++L + M   G +P   TY  ++RG      + +A 
Sbjct: 563 APTVMTYNALIHGLVRKHQVEKAVSVLDK-MSIAGIAPNEHTYTIIMRGYAASGDIGKAF 621

Query: 372 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 431
           E F  +   G+  D   Y  ++   C+S ++  A     ++ +     + ++Y  +I G 
Sbjct: 622 EYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGW 681

Query: 432 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 491
            R G + EA   L ++ + G+ PNI  +   I+  CK    + A  +++EM   GL P+ 
Sbjct: 682 ARRGDVWEAADLLKQMKEDGIPPNIHTFTSYINACCKAGDMQRAENVIQEMADVGLKPNV 741

Query: 492 VTWRILDK 499
            T+  L K
Sbjct: 742 KTFTTLIK 749



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 100/430 (23%), Positives = 178/430 (41%), Gaps = 48/430 (11%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP-- 62
           C    +  A +L  +M+  G    +  Y +++HGY    +      VF+ ++ CG  P  
Sbjct: 367 CQSGNMDRAEELVREMEEDGIDAPIDVYHSMMHGYTVVQDEKKCLIVFERLKECGFKPTI 426

Query: 63  ---------------------------------NSLTYSVLVRGVLRTRDVERANVLMFK 89
                                            N+ TYS+L+ G +   D   A    F 
Sbjct: 427 ISYGCLINLYVKVGKVPKAIAISKEMESHGIKHNNKTYSMLINGFIHLHDFANA----FS 482

Query: 90  LWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSL 149
           ++E M  +  L  + A +  LV++ C+ G ++   RI E M + +          +I+  
Sbjct: 483 IFEDMI-KSGLQPDRAIYNLLVEAFCKMGNMDRAIRIFERMQKERMQPSNRTFRPIIEGF 541

Query: 150 CRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSE 209
             +G    A   + +MR+ G  P++++YN+++HGL +     +A  +L++    G  P+E
Sbjct: 542 AVAGDMKRAFDTLDLMRRSGCAPTVMTYNALIHGLVRKHQVEKAVSVLDKMSIAGIAPNE 601

Query: 210 HTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIY---LRALCLIKNPTELLNV 266
           HTY +++ G     D+ KA    ++    K+        IY   LRA C        L V
Sbjct: 602 HTYTIIMRGYAASGDIGKA---FEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAV 658

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
              M   +   +    N +I+G+ + G + EA  +L  M       P+  TFT+ I    
Sbjct: 659 TREMSFQKIPRNTFIYNILIDGWARRGDVWEAADLLKQMKEDGI-PPNIHTFTSYINACC 717

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
             G +Q A N++ Q M   G  P + T+  +++G  R+   + A + F  M   G+  D 
Sbjct: 718 KAGDMQRAENVI-QEMADVGLKPNVKTFTTLIKGWARVSLPDRALKCFEEMKSAGLKPDE 776

Query: 387 TTYAIVIDGL 396
             Y  ++  L
Sbjct: 777 AAYHCLVTSL 786



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 101/494 (20%), Positives = 186/494 (37%), Gaps = 117/494 (23%)

Query: 116 REGYVNEVFRIAEDMPQG------------KSVNEEFACGHMIDSLCRSGRNHGASRVVY 163
           RE    E  R+ E  P+             K    EF  G M+    + G  H A     
Sbjct: 218 REDACREFRRVLESRPEDWQAVVSAFERIPKPSRREF--GLMVVYYAKRGDKHHARATFE 275

Query: 164 VMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGES 223
            MR RG+ P+   + S+VH     G    A   +EE    G   +  TY +L+ G    +
Sbjct: 276 NMRARGIEPNAFVFTSLVHAYAVAGDMRGALSCVEEMKSEGIEMTVVTYSILISGYGKTN 335

Query: 224 DLEKARKVLQFMLSKKDVDRTRICNIYLRALCL------------------IKNPTELLN 265
           D + A  + +   +K D     I +  + A C                   I  P ++ +
Sbjct: 336 DAQSADNLFKEAKTKLDNLNGIIYSNIIHAHCQSGNMDRAEELVREMEEDGIDAPIDVYH 395

Query: 266 ---------------VLVFMLQTQC--QPDVITLNTVINGFCKMGRIEEALKVLNDM--- 305
                          ++VF    +C  +P +I+   +IN + K+G++ +A+ +  +M   
Sbjct: 396 SMMHGYTVVQDEKKCLIVFERLKECGFKPTIISYGCLINLYVKVGKVPKAIAISKEMESH 455

Query: 306 ---------------------VAGKFC----------APDAVTFTTIIFGLLNVGRIQEA 334
                                 A  F            PD   +  ++     +G +  A
Sbjct: 456 GIKHNNKTYSMLINGFIHLHDFANAFSIFEDMIKSGLQPDRAIYNLLVEAFCKMGNMDRA 515

Query: 335 LNLLYQVMPQR----------------------------------GYSPGIVTYNAVLRG 360
           + +  ++  +R                                  G +P ++TYNA++ G
Sbjct: 516 IRIFERMQKERMQPSNRTFRPIIEGFAVAGDMKRAFDTLDLMRRSGCAPTVMTYNALIHG 575

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L R  +VE+A  V + M   G+  +  TY I++ G   S  + +A  ++  I       D
Sbjct: 576 LVRKHQVEKAVSVLDKMSIAGIAPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLD 635

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
            Y+Y  +++  C+SG++  A+    E+    +  N   YN++IDG  +     EA  +L+
Sbjct: 636 VYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAADLLK 695

Query: 481 EMRKNGLNPDAVTW 494
           +M+++G+ P+  T+
Sbjct: 696 QMKEDGIPPNIHTF 709



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/333 (20%), Positives = 136/333 (40%), Gaps = 41/333 (12%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C +  +  A ++F  M+     P+  ++  +I G+   G+M  A+   D MR  G 
Sbjct: 503 VEAFCKMGNMDRAIRIFERMQKERMQPSNRTFRPIIEGFAVAGDMKRAFDTLDLMRRSGC 562

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P  +TY+ L+ G++R   VE+A  ++ K+         ++ N   +  ++      G +
Sbjct: 563 APTVMTYNALIHGLVRKHQVEKAVSVLDKM-----SIAGIAPNEHTYTIIMRGYAASGDI 617

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            + F     + +     + +    ++ + C+SGR   A  V   M  + +  +   YN +
Sbjct: 618 GKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNIL 677

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G  + G    A  LL++  + G  P+ HT+   +   C   D+++A  V+Q M    D
Sbjct: 678 IDGWARRGDVWEAADLLKQMKEDGIPPNIHTFTSYINACCKAGDMQRAENVIQEM---AD 734

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           V                                  +P+V T  T+I G+ ++   + ALK
Sbjct: 735 VG--------------------------------LKPNVKTFTTLIKGWARVSLPDRALK 762

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQE 333
              +M +     PD   +  ++  LL+   + E
Sbjct: 763 CFEEMKSAGL-KPDEAAYHCLVTSLLSRATVME 794



 Score = 43.5 bits (101), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 29/163 (17%), Positives = 69/163 (42%)

Query: 339 YQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE 398
           ++ M  RG  P    + +++        +  A      M   G+     TY+I+I G  +
Sbjct: 274 FENMRARGIEPNAFVFTSLVHAYAVAGDMRGALSCVEEMKSEGIEMTVVTYSILISGYGK 333

Query: 399 SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVC 458
           +N    A   + +     +  +  +Y+ +I   C+SG +  A   + E+ + G+   I  
Sbjct: 334 TNDAQSADNLFKEAKTKLDNLNGIIYSNIIHAHCQSGNMDRAEELVREMEEDGIDAPIDV 393

Query: 459 YNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLH 501
           Y+ ++ G   +  +++   +   +++ G  P  +++  L  L+
Sbjct: 394 YHSMMHGYTVVQDEKKCLIVFERLKECGFKPTIISYGCLINLY 436


>gi|449446121|ref|XP_004140820.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Cucumis sativus]
          Length = 590

 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 105/381 (27%), Positives = 189/381 (49%), Gaps = 42/381 (11%)

Query: 24  GHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERA 83
           G  P V  Y  LI+ +C+ G +  A  +F+E+R  G+ P +++++ L+ G+ ++R+++  
Sbjct: 218 GFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEG 277

Query: 84  NVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACG 143
               F+L + M EE  +  +   ++ L+  LC+EG ++   ++ ++M Q           
Sbjct: 278 ----FRLKKTM-EENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFT 332

Query: 144 HMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQF 203
            +ID  CRS R   A    + M   G+ P LV YN++++GLCK G   +A +L++E    
Sbjct: 333 ALIDGQCRSRRIDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMRMV 392

Query: 204 GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTEL 263
           G  P + TY  L++G C E DLE A ++ + M  +  V                      
Sbjct: 393 GMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVV---------------------- 430

Query: 264 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF 323
                         D +    +I+GFC+ GR+ +A + L +MV      PD  T+T +I 
Sbjct: 431 -------------LDNVAFTALISGFCRDGRVRDAERTLREMVEAGM-KPDDATYTMVID 476

Query: 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 383
           G    G ++    LL + M   G+ PG++TYN ++ GL +  +++ A  +   ML +GV 
Sbjct: 477 GYCKKGNVKMGFKLLKE-MQINGHKPGVITYNVLMNGLCKQGQMKNANMLLEAMLNLGVT 535

Query: 384 ADSTTYAIVIDGLCESNQLDE 404
            D  TY I+++G C++ + ++
Sbjct: 536 PDDITYNILLEGHCKNGKAED 556



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 91/325 (28%), Positives = 164/325 (50%), Gaps = 4/325 (1%)

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
           +I+  C+ G    A  +   +RKRGL P+ VS+N++++GLCK       ++L +   +  
Sbjct: 229 LINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTMEENR 288

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL 264
             P   TY VL+ GLC E  L+ A ++   M  +            +   C  +     +
Sbjct: 289 IYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQCRSRRIDSAM 348

Query: 265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM-VAGKFCAPDAVTFTTIIF 323
           N    ML    +PD++  NT++NG CK+G + +A K++++M + G    PD +T+TT+I 
Sbjct: 349 NTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMRMVG--MKPDKITYTTLID 406

Query: 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 383
           G    G ++ A+ +  + M + G     V + A++ G  R  RV +A+     M+  G+ 
Sbjct: 407 GYCKEGDLESAMEI-RKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMK 465

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
            D  TY +VIDG C+   +    +   ++    +      Y  ++ GLC+ G++  A   
Sbjct: 466 PDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNANML 525

Query: 444 LYELVDSGVTPNIVCYNVVIDGACK 468
           L  +++ GVTP+ + YN++++G CK
Sbjct: 526 LEAMLNLGVTPDDITYNILLEGHCK 550



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 90/347 (25%), Positives = 161/347 (46%), Gaps = 37/347 (10%)

Query: 194 YQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRA 253
           +    E +++G+ P    Y +L+   C E  +  A+ +   +  +     T   N  +  
Sbjct: 208 WTFYSEILEYGFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLING 267

Query: 254 LCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAP 313
           LC  +N  E   +   M + +  PDV T + +I+G CK GR++ A ++ ++M   +   P
Sbjct: 268 LCKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEM-QQRGLRP 326

Query: 314 DAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEV 373
           + +TFT +I G     RI  A+N  +Q++   G  P +V YN +L GL ++  V +A+++
Sbjct: 327 NGITFTALIDGQCRSRRIDSAMNTYHQMLTM-GVKPDLVMYNTLLNGLCKVGDVNKARKL 385

Query: 374 FNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR 433
            + M  +G+  D  TY  +IDG C+   L+ A      +     + DN  + A+I G CR
Sbjct: 386 VDEMRMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCR 445

Query: 434 SGKIHEAVHFLYELVDSGVTPN-----------------------------------IVC 458
            G++ +A   L E+V++G+ P+                                   ++ 
Sbjct: 446 DGRVRDAERTLREMVEAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVIT 505

Query: 459 YNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
           YNV+++G CK    + A  +L  M   G+ PD +T+ IL + H   G
Sbjct: 506 YNVLMNGLCKQGQMKNANMLLEAMLNLGVTPDDITYNILLEGHCKNG 552



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 105/408 (25%), Positives = 185/408 (45%), Gaps = 48/408 (11%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +++ C    + +A  +F +++ RG  P  VS+ TLI+G C++  +D  +++   M    +
Sbjct: 230 INKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTMEENRI 289

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+  TYSVL+ G+ +   ++ A  L  ++ +R      L  N   F  L+D  C     
Sbjct: 290 YPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQR-----GLRPNGITFTALIDGQC----- 339

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                                         RS R   A    + M   G+ P LV YN++
Sbjct: 340 ------------------------------RSRRIDSAMNTYHQMLTMGVKPDLVMYNTL 369

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++GLCK G   +A +L++E    G  P + TY  L++G C E DLE A ++ + M  +  
Sbjct: 370 LNGLCKVGDVNKARKLVDEMRMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGV 429

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           V         +   C      +    L  M++   +PD  T   VI+G+CK G ++   K
Sbjct: 430 VLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVIDGYCKKGNVKMGFK 489

Query: 301 VLNDM-VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           +L +M + G    P  +T+  ++ GL   G+++ A N+L + M   G +P  +TYN +L 
Sbjct: 490 LLKEMQINGH--KPGVITYNVLMNGLCKQGQMKNA-NMLLEAMLNLGVTPDDITYNILLE 546

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKR 407
           G  +  + E+  ++ N     G++ D   Y  ++    +S + D  KR
Sbjct: 547 GHCKNGKAEDLLKLRN---EKGLIVDYAYYTSLVSEYNKSLK-DRQKR 590


>gi|297811615|ref|XP_002873691.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319528|gb|EFH49950.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 938

 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 126/499 (25%), Positives = 232/499 (46%), Gaps = 18/499 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    +  A  +   M  +   PNVV+Y+++I+GY + G ++ A  +  +M    V
Sbjct: 371 VDGLCKAGDLSSAEFIITQMLEKSVFPNVVTYSSMINGYVKKGMLEEAVSLMRKMEDQNV 430

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSV--NNAAFANLVDSLCREG 118
           +PN  TY  ++ G+ +    E A+       E  KE   + V  NN     LV+ L R G
Sbjct: 431 VPNGFTYGTVIDGLFKAGKQEVAS-------EMSKEMRLIGVEENNYILDALVNHLKRIG 483

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
            + EV  + +DM       +      +ID   + G    A      M+++ +   +VSYN
Sbjct: 484 RIKEVKGLVKDMVSKGVTLDHINYTSLIDVFFKGGDEEAALSWAEEMQEKEMPWDVVSYN 543

Query: 179 SIVHGLCKHG--GCMRAYQ-LLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM 235
            ++ GL K G  G   AY+ + E+GI+    P   T+ +++     + D E   K+   M
Sbjct: 544 VLISGLLKFGKVGADWAYKGMREKGIE----PDIATFNIMMNSQRKQGDFEGILKLWDKM 599

Query: 236 LSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 295
            S        ICNI +  LC      E +++L  M+  +  P++ T    ++   K  R 
Sbjct: 600 KSCGIKPSLMICNIVVGMLCEKGKMKEAIDILDQMMFMEIHPNLTTYRIFLDMSSKHKRA 659

Query: 296 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN 355
           +   K    +++        V + T+I  L  +G  ++A  ++ + M  RG+ P  VT+N
Sbjct: 660 DAIFKTHETLLSYGIKLSRQV-YNTLIATLCKLGMTRKA-AMVMEDMEARGFVPDTVTFN 717

Query: 356 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP 415
           A++ G F    V +A   ++ M+  G+  +  TY  +I GL ++  + E +++  ++   
Sbjct: 718 ALMHGYFVGSHVGKALSTYSMMMEAGISPNVATYNTIIRGLSDAGLIKEVEKWLSEMKSR 777

Query: 416 SNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREA 475
               D++ Y A+I G  + G   E++    E++  G+ P    YNV+I    K+    +A
Sbjct: 778 GMRPDDFTYNALISGQAKIGNKKESMTIYCEMIADGLVPKTSTYNVLISEFAKVGKMLQA 837

Query: 476 YQILREMRKNGLNPDAVTW 494
            ++++EM K  ++P+  T+
Sbjct: 838 TELMKEMGKRRVSPNTSTY 856



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 110/364 (30%), Positives = 180/364 (49%), Gaps = 21/364 (5%)

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
           FA   +I SLC+ G+    S  + ++R R ++   V+YN+++ GLC+HG    AYQ L E
Sbjct: 130 FALNVLIHSLCKVGQ---LSFAISLLRNRVISVDTVTYNTVISGLCEHGLADEAYQFLSE 186

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIK- 258
            ++ G LP   ++  L++G C         KV  F  +K  VD     N+    + +   
Sbjct: 187 MVKIGILPDTVSFNTLIDGFC---------KVGNFARAKALVDEISELNLITHTILISSY 237

Query: 259 -NPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA-GKFCAPDAV 316
            N   +      M+ +   PDV+T +++IN  CK G++ E   +L +M   G +  P+ V
Sbjct: 238 YNLHAIEEAYRDMVMSGFDPDVVTFSSIINRLCKDGKVMEGGLLLREMEEMGVY--PNHV 295

Query: 317 TFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNC 376
           T+TT++  L      + AL L Y  M  RG    +V Y  ++ GLF+   + EA++ F  
Sbjct: 296 TYTTLVDSLFKAKDYRHALAL-YSQMVVRGIPVDLVVYTVLMAGLFKAGDLREAEKTFKM 354

Query: 377 MLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGK 436
           +L    V +  TY  ++DGLC++  L  A+     ++  S   +   Y++MI G  + G 
Sbjct: 355 LLEDNEVPNVVTYTALVDGLCKAGDLSSAEFIITQMLEKSVFPNVVTYSSMINGYVKKGM 414

Query: 437 IHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRI 496
           + EAV  + ++ D  V PN   Y  VIDG  K   +  A ++ +EMR  G+  +     I
Sbjct: 415 LEEAVSLMRKMEDQNVVPNGFTYGTVIDGLFKAGKQEVASEMSKEMRLIGVEENNY---I 471

Query: 497 LDKL 500
           LD L
Sbjct: 472 LDAL 475



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 123/526 (23%), Positives = 228/526 (43%), Gaps = 48/526 (9%)

Query: 6   GLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSL 65
            L +VG+       +++R    + V+Y T+I G C  G  D AY+   EM   G+LP+++
Sbjct: 138 SLCKVGQLSFAISLLRNRVISVDTVTYNTVISGLCEHGLADEAYQFLSEMVKIGILPDTV 197

Query: 66  TYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFR 125
           +++ L+ G  +  +  RA  L+ ++ E         +N      L+ S      + E +R
Sbjct: 198 SFNTLIDGFCKVGNFARAKALVDEISE---------LNLITHTILISSYYNLHAIEEAYR 248

Query: 126 IAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLC 185
              DM       +      +I+ LC+ G+      ++  M + G+ P+ V+Y ++V  L 
Sbjct: 249 ---DMVMSGFDPDVVTFSSIINRLCKDGKVMEGGLLLREMEEMGVYPNHVTYTTLVDSLF 305

Query: 186 KHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTR 245
           K      A  L  + +  G       Y VL+ GL    DL +A K  + +L   +V    
Sbjct: 306 KAKDYRHALALYSQMVVRGIPVDLVVYTVLMAGLFKAGDLREAEKTFKMLLEDNEVPNVV 365

Query: 246 ICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM 305
                +  LC   + +    ++  ML+    P+V+T +++ING+ K G +EEA+ ++  M
Sbjct: 366 TYTALVDGLCKAGDLSSAEFIITQMLEKSVFPNVVTYSSMINGYVKKGMLEEAVSLMRKM 425

Query: 306 VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLR 365
              +   P+  T+ T+I GL   G+ QE  + + + M   G        +A++  L R+ 
Sbjct: 426 -EDQNVVPNGFTYGTVIDGLFKAGK-QEVASEMSKEMRLIGVEENNYILDALVNHLKRIG 483

Query: 366 RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYA 425
           R++E K +   M+  GV  D   Y  +ID   +    + A  + +++       D   Y 
Sbjct: 484 RIKEVKGLVKDMVSKGVTLDHINYTSLIDVFFKGGDEEAALSWAEEMQEKEMPWDVVSYN 543

Query: 426 AMIKGLCRSGKI---------------------------------HEAVHFLYELVDS-G 451
            +I GL + GK+                                  E +  L++ + S G
Sbjct: 544 VLISGLLKFGKVGADWAYKGMREKGIEPDIATFNIMMNSQRKQGDFEGILKLWDKMKSCG 603

Query: 452 VTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           + P+++  N+V+   C+    +EA  IL +M    ++P+  T+RI 
Sbjct: 604 IKPSLMICNIVVGMLCEKGKMKEAIDILDQMMFMEIHPNLTTYRIF 649



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 120/511 (23%), Positives = 221/511 (43%), Gaps = 56/511 (10%)

Query: 4   LCGLSRVG---EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           + GL + G   EA K F  +     VPNVV+YT L+ G C+ G++  A  +  +M    V
Sbjct: 336 MAGLFKAGDLREAEKTFKMLLEDNEVPNVVTYTALVDGLCKAGDLSSAEFIITQMLEKSV 395

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +TYS ++ G ++   +E A  LM K+     E++++  N   +  ++D L + G  
Sbjct: 396 FPNVVTYSSMINGYVKKGMLEEAVSLMRKM-----EDQNVVPNGFTYGTVIDGLFKAGKQ 450

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                ++++M         +    +++ L R GR      +V  M  +G+T   ++Y S+
Sbjct: 451 EVASEMSKEMRLIGVEENNYILDALVNHLKRIGRIKEVKGLVKDMVSKGVTLDHINYTSL 510

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEH-TYKVLVEGLC--GESDLEKARKVLQFMLS 237
           +    K G    A    EE +Q   +P +  +Y VL+ GL   G+   + A K ++    
Sbjct: 511 IDVFFKGGDEEAALSWAEE-MQEKEMPWDVVSYNVLISGLLKFGKVGADWAYKGMR---- 565

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
                                             +   +PD+ T N ++N   K G  E 
Sbjct: 566 ----------------------------------EKGIEPDIATFNIMMNSQRKQGDFEG 591

Query: 298 ALKVLNDMVAGKFCA-PDAVTFTTIIFGLL-NVGRIQEALNLLYQVMPQRGYSPGIVTYN 355
            LK+ + M   K C    ++    I+ G+L   G+++EA+++L Q+M    + P + TY 
Sbjct: 592 ILKLWDKM---KSCGIKPSLMICNIVVGMLCEKGKMKEAIDILDQMMFMEIH-PNLTTYR 647

Query: 356 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP 415
             L    + +R +   +    +L  G+      Y  +I  LC+     +A    +D+   
Sbjct: 648 IFLDMSSKHKRADAIFKTHETLLSYGIKLSRQVYNTLIATLCKLGMTRKAAMVMEDMEAR 707

Query: 416 SNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREA 475
             + D   + A++ G      + +A+     ++++G++PN+  YN +I G     + +E 
Sbjct: 708 GFVPDTVTFNALMHGYFVGSHVGKALSTYSMMMEAGISPNVATYNTIIRGLSDAGLIKEV 767

Query: 476 YQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
            + L EM+  G+ PD  T+  L       GN
Sbjct: 768 EKWLSEMKSRGMRPDDFTYNALISGQAKIGN 798



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 118/500 (23%), Positives = 227/500 (45%), Gaps = 28/500 (5%)

Query: 16  LFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVL 75
           ++  M + G  P+V +   LIH  C+ G++  A  +   +R+  +  +++TY+ ++ G+ 
Sbjct: 116 VYSKMIACGVSPDVFALNVLIHSLCKVGQLSFAISL---LRNRVISVDTVTYNTVISGLC 172

Query: 76  RTRDVERANVLMFKLWERMKEEEDLSV--NNAAFANLVDSLCREGYVNEVFRIAEDMPQG 133
                + A       ++ + E   + +  +  +F  L+D  C+ G          +  + 
Sbjct: 173 EHGLADEA-------YQFLSEMVKIGILPDTVSFNTLIDGFCKVG----------NFARA 215

Query: 134 KSVNEEFACGHMIDS--LCRSGRN-HGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGC 190
           K++ +E +  ++I    L  S  N H        M   G  P +V+++SI++ LCK G  
Sbjct: 216 KALVDEISELNLITHTILISSYYNLHAIEEAYRDMVMSGFDPDVVTFSSIINRLCKDGKV 275

Query: 191 MRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIY 250
           M    LL E  + G  P+  TY  LV+ L    D   A  +   M+ +       +  + 
Sbjct: 276 MEGGLLLREMEEMGVYPNHVTYTTLVDSLFKAKDYRHALALYSQMVVRGIPVDLVVYTVL 335

Query: 251 LRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKF 310
           +  L    +  E       +L+    P+V+T   +++G CK G +  A  ++  M+  K 
Sbjct: 336 MAGLFKAGDLREAEKTFKMLLEDNEVPNVVTYTALVDGLCKAGDLSSAEFIITQMLE-KS 394

Query: 311 CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEA 370
             P+ VT++++I G +  G ++EA++L+ + M  +   P   TY  V+ GLF+  + E A
Sbjct: 395 VFPNVVTYSSMINGYVKKGMLEEAVSLMRK-MEDQNVVPNGFTYGTVIDGLFKAGKQEVA 453

Query: 371 KEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKG 430
            E+   M  IGV  ++     +++ L    ++ E K    D+V      D+  Y ++I  
Sbjct: 454 SEMSKEMRLIGVEENNYILDALVNHLKRIGRIKEVKGLVKDMVSKGVTLDHINYTSLIDV 513

Query: 431 LCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD 490
             + G    A+ +  E+ +  +  ++V YNV+I G  K   K  A    + MR+ G+ PD
Sbjct: 514 FFKGGDEEAALSWAEEMQEKEMPWDVVSYNVLISGLLKFG-KVGADWAYKGMREKGIEPD 572

Query: 491 AVTWRILDKLHGNRGNDFGL 510
             T+ I+      +G+  G+
Sbjct: 573 IATFNIMMNSQRKQGDFEGI 592



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 102/374 (27%), Positives = 173/374 (46%), Gaps = 40/374 (10%)

Query: 153 GRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLL-EEGIQFGYLPSEHT 211
           GR +GA+R +  M   G+ P L  +NS++H    +G       L+  + I  G  P    
Sbjct: 72  GRLYGAARTLSAMCTFGVVPDLCLWNSLIHQFNVNGLVHDQVSLVYSKMIACGVSPDVFA 131

Query: 212 YKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFML 271
             VL+  LC    L  A  +L+  +   D   T   N  +  LC      E    L  M+
Sbjct: 132 LNVLIHSLCKVGQLSFAISLLRNRVISVD---TVTYNTVISGLCEHGLADEAYQFLSEMV 188

Query: 272 QTQCQPDVITLNTVINGFCKMGR-------------------------------IEEALK 300
           +    PD ++ NT+I+GFCK+G                                IEEA +
Sbjct: 189 KIGILPDTVSFNTLIDGFCKVGNFARAKALVDEISELNLITHTILISSYYNLHAIEEAYR 248

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
              DMV   F  PD VTF++II  L   G++ E   LL + M + G  P  VTY  ++  
Sbjct: 249 ---DMVMSGF-DPDVVTFSSIINRLCKDGKVMEG-GLLLREMEEMGVYPNHVTYTTLVDS 303

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           LF+ +    A  +++ M+  G+  D   Y +++ GL ++  L EA++ +  ++  + + +
Sbjct: 304 LFKAKDYRHALALYSQMVVRGIPVDLVVYTVLMAGLFKAGDLREAEKTFKMLLEDNEVPN 363

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              Y A++ GLC++G +  A   + ++++  V PN+V Y+ +I+G  K  M  EA  ++R
Sbjct: 364 VVTYTALVDGLCKAGDLSSAEFIITQMLEKSVFPNVVTYSSMINGYVKKGMLEEAVSLMR 423

Query: 481 EMRKNGLNPDAVTW 494
           +M    + P+  T+
Sbjct: 424 KMEDQNVVPNGFTY 437



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 110/249 (44%), Gaps = 32/249 (12%)

Query: 277 PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALN 336
           PD+   N++I+ F   G + + + ++   +     +PD      +I  L  VG++  A++
Sbjct: 91  PDLCLWNSLIHQFNVNGLVHDQVSLVYSKMIACGVSPDVFALNVLIHSLCKVGQLSFAIS 150

Query: 337 LLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 396
           LL      R  S   VTYN V+ GL      +EA +  + M+ IG++ D+ ++  +IDG 
Sbjct: 151 LL----RNRVISVDTVTYNTVISGLCEHGLADEAYQFLSEMVKIGILPDTVSFNTLIDGF 206

Query: 397 CESNQLDEAKRFWDDIVWPS------------NIH----------------DNYVYAAMI 428
           C+      AK   D+I   +            N+H                D   ++++I
Sbjct: 207 CKVGNFARAKALVDEISELNLITHTILISSYYNLHAIEEAYRDMVMSGFDPDVVTFSSII 266

Query: 429 KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLN 488
             LC+ GK+ E    L E+ + GV PN V Y  ++D   K    R A  +  +M   G+ 
Sbjct: 267 NRLCKDGKVMEGGLLLREMEEMGVYPNHVTYTTLVDSLFKAKDYRHALALYSQMVVRGIP 326

Query: 489 PDAVTWRIL 497
            D V + +L
Sbjct: 327 VDLVVYTVL 335


>gi|357448559|ref|XP_003594555.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483603|gb|AES64806.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 639

 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 126/505 (24%), Positives = 249/505 (49%), Gaps = 20/505 (3%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           R  +   L  DM+ RG V   +S   ++ G+   G++D   +    ++  G+  N+ +Y 
Sbjct: 139 RFEQTESLLDDMEKRG-VKGSISTVNILIGFF--GDLD---RCVGLVKKWGLRFNAYSYK 192

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
            L++G LR RD ++A    F ++  M      S++  AF  L+D+L ++  V++ +++ E
Sbjct: 193 CLLQGYLRLRDCDKA----FGVYLDMLRC-GYSLDIFAFNMLLDALAKDQKVDKAYKVFE 247

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
           DM +     + F    MI    ++G+   +  +   M ++G T +L++YN+++  L K  
Sbjct: 248 DMKRRHCEPDTFTYTIMIRMTGKAGKTDESLALFQAMLEKGFTLNLIAYNTMIEALAKGR 307

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
              +A  L  + ++ G  P+E TY VL+  L  E  L K   +++  +SKK +++ +I  
Sbjct: 308 MADKAVLLFSKMVENGCQPNEFTYSVLLNVLVAEGQLNKLDNIVE--MSKKYMNK-QIYA 364

Query: 249 IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 308
            ++R L  + + +E   +   M     + D     +++   C  G+I EA+ +LN     
Sbjct: 365 YFVRTLSKLGHSSEAHRLFCNMWNVHDKGDKDAYMSMLESLCSSGKIAEAIDLLNRF-HE 423

Query: 309 KFCAPDAVTFTTIIFGLLNVGRIQEALNL--LYQVMPQRGYSPGIVTYNAVLRGLFRLRR 366
           K    D + + T+   L   GR+++  ++  LY+ M Q G  P I TYN ++    R  R
Sbjct: 424 KCITTDTIMYNTVFTAL---GRLKQVSHIHDLYEKMKQDGPPPDIFTYNILISSYGRAGR 480

Query: 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAA 426
           V+ A ++F  +       D  +Y  +I+ L ++  +DEA   + ++       D   Y+ 
Sbjct: 481 VDSAVKIFEELENSNCQPDVISYNSLINCLGKNGDVDEAHMRFKEMQEKGLNPDVVTYST 540

Query: 427 MIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG 486
           +I+   ++ K+  A     E++  G +PN+V YN+++D   +     EA  +  ++++ G
Sbjct: 541 LIECFGKTDKVEMACSLFDEMIAEGCSPNLVTYNILLDCLERSGRTAEAVDLYAKLKQQG 600

Query: 487 LNPDAVTWRILDKLHGNRGNDFGLR 511
           L PD++T+ +L++L   R     +R
Sbjct: 601 LTPDSITYAVLERLQSGRHGKLRVR 625



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 101/419 (24%), Positives = 183/419 (43%), Gaps = 64/419 (15%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D L    +V +A+K+F DMK R   P+  +YT +I    + G+ D +  +F  M   G 
Sbjct: 230 LDALAKDQKVDKAYKVFEDMKRRHCEPDTFTYTIMIRMTGKAGKTDESLALFQAMLEKGF 289

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLS------------------- 101
             N + Y+ ++  + + R  ++A +L  K+ E   +  + +                   
Sbjct: 290 TLNLIAYNTMIEALAKGRMADKAVLLFSKMVENGCQPNEFTYSVLLNVLVAEGQLNKLDN 349

Query: 102 --------VNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSG 153
                   +N   +A  V +L + G+ +E  R+  +M       ++ A   M++SLC SG
Sbjct: 350 IVEMSKKYMNKQIYAYFVRTLSKLGHSSEAHRLFCNMWNVHDKGDKDAYMSMLESLCSSG 409

Query: 154 RNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYK 213
           +   A  ++    ++ +T   + YN++   L +       + L E+  Q G  P   TY 
Sbjct: 410 KIAEAIDLLNRFHEKCITTDTIMYNTVFTALGRLKQVSHIHDLYEKMKQDGPPPDIFTYN 469

Query: 214 VLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQT 273
           +L+        ++ A K+ +                            EL N       +
Sbjct: 470 ILISSYGRAGRVDSAVKIFE----------------------------ELEN-------S 494

Query: 274 QCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQE 333
            CQPDVI+ N++IN   K G ++EA     +M   K   PD VT++T+I       +++ 
Sbjct: 495 NCQPDVISYNSLINCLGKNGDVDEAHMRFKEM-QEKGLNPDVVTYSTLIECFGKTDKVEM 553

Query: 334 ALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIV 392
           A +L  +++ + G SP +VTYN +L  L R  R  EA +++  +   G+  DS TYA++
Sbjct: 554 ACSLFDEMIAE-GCSPNLVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSITYAVL 611


>gi|297734659|emb|CBI16710.3| unnamed protein product [Vitis vinifera]
          Length = 569

 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 121/448 (27%), Positives = 218/448 (48%), Gaps = 7/448 (1%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C   R  +A   F  M  RG  P VV++ T+I+ +C+ G +  A K+FD ++  G  PN+
Sbjct: 102 CIRGRTSDALAWFNLMIERGCNPTVVTFNTVINAFCKEGNVVEARKLFDGLKEMGFSPNA 161

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           + Y+ L+ G ++ R++++AN+    L+E M+ ++ ++ +   F  LV    + G   +  
Sbjct: 162 IMYNTLMNGYVKMREIDQANM----LYEEMR-KKGIAPDGITFNILVSGHYKYGREEDGD 216

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
           R+ +D+     + +       +  LC +GR   A   +  M ++GL+PS++++NS++   
Sbjct: 217 RLLKDISVLGLLPDRSLFDISVSGLCWAGRLDEAMEFLMDMLEKGLSPSIIAFNSVIAAY 276

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
            + G   +A++  +  + FG  PS  T   L+ GL     L++A +++  M+ K      
Sbjct: 277 SQAGLEDKAFEAYKLMVHFGLTPSPSTCSSLLMGLSINGRLQEATELIGQMIEKGLSVNN 336

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
               + L       +     ++   M +    PDV+  +  I+G  K G +EEA  V  +
Sbjct: 337 MAFTVLLDKFFKRGDVVGAQSLWGEMERRGIFPDVVAFSAFIDGLSKQGLVEEAYNVFLE 396

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
           M+  K   P+   + ++I G    G++ EAL  L +VM  RG  P I T N ++ GL + 
Sbjct: 397 MLR-KGLIPNNFAYNSLICGFCKCGKLNEALK-LEKVMRHRGLLPDIFTTNMIIGGLCKQ 454

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY 424
            R+  A  VF  M   G+  D  TY  +I+G C++  +  A    + +    +  D   Y
Sbjct: 455 GRMRSAINVFMDMHQTGLSPDIITYNTLINGYCKAFDMVNADNLVNRMYASGSNPDLTTY 514

Query: 425 AAMIKGLCRSGKIHEAVHFLYELVDSGV 452
              I G C S +++ AV  L ELV +G+
Sbjct: 515 NIRIHGFCSSRRMNRAVLMLDELVSAGI 542



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 120/493 (24%), Positives = 229/493 (46%), Gaps = 11/493 (2%)

Query: 11  GEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVL 70
           G   KLF D+  RG  P   +++ +I G+CR G + +   +   M      PN+  Y+++
Sbjct: 38  GNVWKLFKDVIRRGPQPCKYTFSGIILGFCRKGCIHLGESLLHLMPKFHCEPNAFAYNIV 97

Query: 71  VRGV-LRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAED 129
           +    +R R  +         W  +  E   +     F  ++++ C+EG V E  ++ + 
Sbjct: 98  INACCIRGRTSDAL------AWFNLMIERGCNPTVVTFNTVINAFCKEGNVVEARKLFDG 151

Query: 130 MPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG 189
           + +            +++   +      A+ +   MRK+G+ P  +++N +V G  K+G 
Sbjct: 152 LKEMGFSPNAIMYNTLMNGYVKMREIDQANMLYEEMRKKGIAPDGITFNILVSGHYKYGR 211

Query: 190 CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNI 249
                +LL++    G LP    + + V GLC    L++A + L  ML K         N 
Sbjct: 212 EEDGDRLLKDISVLGLLPDRSLFDISVSGLCWAGRLDEAMEFLMDMLEKGLSPSIIAFNS 271

Query: 250 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK 309
            + A        +       M+     P   T ++++ G    GR++EA +++  M+  K
Sbjct: 272 VIAAYSQAGLEDKAFEAYKLMVHFGLTPSPSTCSSLLMGLSINGRLQEATELIGQMIE-K 330

Query: 310 FCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEE 369
             + + + FT ++      G +  A +L +  M +RG  P +V ++A + GL +   VEE
Sbjct: 331 GLSVNNMAFTVLLDKFFKRGDVVGAQSL-WGEMERRGIFPDVVAFSAFIDGLSKQGLVEE 389

Query: 370 AKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIK 429
           A  VF  ML  G++ ++  Y  +I G C+  +L+EA +    +     + D +    +I 
Sbjct: 390 AYNVFLEMLRKGLIPNNFAYNSLICGFCKCGKLNEALKLEKVMRHRGLLPDIFTTNMIIG 449

Query: 430 GLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNP 489
           GLC+ G++  A++   ++  +G++P+I+ YN +I+G CK      A  ++  M  +G NP
Sbjct: 450 GLCKQGRMRSAINVFMDMHQTGLSPDIITYNTLINGYCKAFDMVNADNLVNRMYASGSNP 509

Query: 490 DAVTWRILDKLHG 502
           D  T+ I  ++HG
Sbjct: 510 DLTTYNI--RIHG 520



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 120/488 (24%), Positives = 223/488 (45%), Gaps = 48/488 (9%)

Query: 48  AYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKE--EEDLSVNNA 105
           A ++   MR  GV P++   ++L + +LR  D    NV     W+  K+           
Sbjct: 5   ALEILGRMREVGVRPSASGVAILFKLLLRVGDY--GNV-----WKLFKDVIRRGPQPCKY 57

Query: 106 AFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVM 165
            F+ ++   CR+G ++    +   MP+       FA   +I++ C  GR   A     +M
Sbjct: 58  TFSGIILGFCRKGCIHLGESLLHLMPKFHCEPNAFAYNIVINACCIRGRTSDALAWFNLM 117

Query: 166 RKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDL 225
            +RG  P++V++N++++  CK G  + A +L +   + G+ P+   Y  L+ G     ++
Sbjct: 118 IERGCNPTVVTFNTVINAFCKEGNVVEARKLFDGLKEMGFSPNAIMYNTLMNGYVKMREI 177

Query: 226 EKARKVLQFMLSK-----------------------------KDV-------DRTRICNI 249
           ++A  + + M  K                             KD+       DR+ + +I
Sbjct: 178 DQANMLYEEMRKKGIAPDGITFNILVSGHYKYGREEDGDRLLKDISVLGLLPDRS-LFDI 236

Query: 250 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK 309
            +  LC      E +  L+ ML+    P +I  N+VI  + + G  ++A +    MV   
Sbjct: 237 SVSGLCWAGRLDEAMEFLMDMLEKGLSPSIIAFNSVIAAYSQAGLEDKAFEAYKLMVHFG 296

Query: 310 FCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEE 369
              P   T ++++ GL   GR+QEA  L+ Q M ++G S   + +  +L   F+   V  
Sbjct: 297 L-TPSPSTCSSLLMGLSINGRLQEATELIGQ-MIEKGLSVNNMAFTVLLDKFFKRGDVVG 354

Query: 370 AKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIK 429
           A+ ++  M   G+  D   ++  IDGL +   ++EA   + +++    I +N+ Y ++I 
Sbjct: 355 AQSLWGEMERRGIFPDVVAFSAFIDGLSKQGLVEEAYNVFLEMLRKGLIPNNFAYNSLIC 414

Query: 430 GLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNP 489
           G C+ GK++EA+     +   G+ P+I   N++I G CK    R A  +  +M + GL+P
Sbjct: 415 GFCKCGKLNEALKLEKVMRHRGLLPDIFTTNMIIGGLCKQGRMRSAINVFMDMHQTGLSP 474

Query: 490 DAVTWRIL 497
           D +T+  L
Sbjct: 475 DIITYNTL 482



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 120/418 (28%), Positives = 198/418 (47%), Gaps = 17/418 (4%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C    V EA KLF  +K  G  PN + Y TL++GY +  E+D A  +++EMR  G+
Sbjct: 133 INAFCKEGNVVEARKLFDGLKEMGFSPNAIMYNTLMNGYVKMREIDQANMLYEEMRKKGI 192

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSV-----NNAAFANLVDSLC 115
            P+ +T+++LV G  +    E  + L+          +D+SV     + + F   V  LC
Sbjct: 193 APDGITFNILVSGHYKYGREEDGDRLL----------KDISVLGLLPDRSLFDISVSGLC 242

Query: 116 REGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLV 175
             G ++E      DM +        A   +I +  ++G    A     +M   GLTPS  
Sbjct: 243 WAGRLDEAMEFLMDMLEKGLSPSIIAFNSVIAAYSQAGLEDKAFEAYKLMVHFGLTPSPS 302

Query: 176 SYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM 235
           + +S++ GL  +G    A +L+ + I+ G   +   + VL++      D+  A+ +   M
Sbjct: 303 TCSSLLMGLSINGRLQEATELIGQMIEKGLSVNNMAFTVLLDKFFKRGDVVGAQSLWGEM 362

Query: 236 LSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 295
             +         + ++  L       E  NV + ML+    P+    N++I GFCK G++
Sbjct: 363 ERRGIFPDVVAFSAFIDGLSKQGLVEEAYNVFLEMLRKGLIPNNFAYNSLICGFCKCGKL 422

Query: 296 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN 355
            EALK L  ++  +   PD  T   II GL   GR++ A+N ++  M Q G SP I+TYN
Sbjct: 423 NEALK-LEKVMRHRGLLPDIFTTNMIIGGLCKQGRMRSAIN-VFMDMHQTGLSPDIITYN 480

Query: 356 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413
            ++ G  +   +  A  + N M   G   D TTY I I G C S +++ A    D++V
Sbjct: 481 TLINGYCKAFDMVNADNLVNRMYASGSNPDLTTYNIRIHGFCSSRRMNRAVLMLDELV 538



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 91/349 (26%), Positives = 173/349 (49%), Gaps = 10/349 (2%)

Query: 165 MRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESD 224
           MR+ G+ PS      +   L + G     ++L ++ I+ G  P ++T+  ++ G C +  
Sbjct: 12  MREVGVRPSASGVAILFKLLLRVGDYGNVWKLFKDVIRRGPQPCKYTFSGIILGFCRKGC 71

Query: 225 LEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNT 284
           +     +L  M            NI + A C+    ++ L     M++  C P V+T NT
Sbjct: 72  IHLGESLLHLMPKFHCEPNAFAYNIVINACCIRGRTSDALAWFNLMIERGCNPTVVTFNT 131

Query: 285 VINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ 344
           VIN FCK G + EA K+ + +    F +P+A+ + T++ G + +  I +A N+LY+ M +
Sbjct: 132 VINAFCKEGNVVEARKLFDGLKEMGF-SPNAIMYNTLMNGYVKMREIDQA-NMLYEEMRK 189

Query: 345 RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 404
           +G +P  +T+N ++ G ++  R E+   +   +  +G++ D + + I + GLC + +LDE
Sbjct: 190 KGIAPDGITFNILVSGHYKYGREEDGDRLLKDISVLGLLPDRSLFDISVSGLCWAGRLDE 249

Query: 405 AKRFWDDIV----WPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYN 460
           A  F  D++     PS I  N V AA      ++G   +A      +V  G+TP+    +
Sbjct: 250 AMEFLMDMLEKGLSPSIIAFNSVIAA----YSQAGLEDKAFEAYKLMVHFGLTPSPSTCS 305

Query: 461 VVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGNDFG 509
            ++ G       +EA +++ +M + GL+ + + + +L      RG+  G
Sbjct: 306 SLLMGLSINGRLQEATELIGQMIEKGLSVNNMAFTVLLDKFFKRGDVVG 354



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 84/340 (24%), Positives = 142/340 (41%), Gaps = 75/340 (22%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R+ EA +   DM  +G  P+++++ ++I  Y + G  D A++ +  M H G+ P+
Sbjct: 241 LCWAGRLDEAMEFLMDMLEKGLSPSIIAFNSVIAAYSQAGLEDKAFEAYKLMVHFGLTPS 300

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNN------------------- 104
             T S L+ G+     ++ A  L+ ++ E+      LSVNN                   
Sbjct: 301 PSTCSSLLMGLSINGRLQEATELIGQMIEK-----GLSVNNMAFTVLLDKFFKRGDVVGA 355

Query: 105 ----------------AAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDS 148
                            AF+  +D L ++G V E + +  +M +   +   FA   +I  
Sbjct: 356 QSLWGEMERRGIFPDVVAFSAFIDGLSKQGLVEEAYNVFLEMLRKGLIPNNFAYNSLICG 415

Query: 149 LCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPS 208
            C+ G+ + A ++  VMR RGL P + + N I+ GLCK G    A  +  +  Q G  P 
Sbjct: 416 FCKCGKLNEALKLEKVMRHRGLLPDIFTTNMIIGGLCKQGRMRSAINVFMDMHQTGLSPD 475

Query: 209 EHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLV 268
             TY  L+ G C   D+  A  +         V+R                         
Sbjct: 476 IITYNTLINGYCKAFDMVNADNL---------VNR------------------------- 501

Query: 269 FMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 308
            M  +   PD+ T N  I+GFC   R+  A+ +L+++V+ 
Sbjct: 502 -MYASGSNPDLTTYNIRIHGFCSSRRMNRAVLMLDELVSA 540


>gi|307135890|gb|ADN33755.1| pentatricopeptide repeat-containing protein [Cucumis melo subsp.
           melo]
          Length = 566

 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 128/481 (26%), Positives = 228/481 (47%), Gaps = 13/481 (2%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M  +G  P+V   T L++  C+  +M  A KV + M   G++P++ +Y+ LV  + R  +
Sbjct: 88  MVEKGQKPDVFQATQLLYDLCKACKMRKAIKVMEMMIGSGIIPDASSYTFLVSSLCRKGN 147

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
           V  A  L+ K+     EE     N   + +LV  LC  G + +  ++ + + Q   V   
Sbjct: 148 VGYAMQLVDKM-----EEYGYPTNTVTYNSLVRGLCMHGNLTQSLQLLDRLIQKGLVPNA 202

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
           +    ++++  +      AS+++  +  +G  P+LVSYN ++ GLCK G    A +L  E
Sbjct: 203 YTYSFLLEAAYKERGADEASKLLDEIIAKGGEPNLVSYNVLLTGLCKEGRTEDAIRLFRE 262

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
               G+ P+  +Y +L+  LC E   E+A  +L  M   +    T   NI + +L L   
Sbjct: 263 LPSKGFSPNVVSYNILLRSLCNEGRWEEANVLLAEMNGDERSPSTVTYNILIGSLALHGR 322

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
               L VL  M++ + +P   + N +I   CK G+++  +K L+ M+  + C P+  T+ 
Sbjct: 323 TEHALEVLEEMIRARFKPTASSYNPIIAHLCKDGKLDLVVKCLDQMMY-RHCNPNEGTYN 381

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
            I   L   G +QEA +++ Q +  + +S     Y  V+  L R      A ++   M  
Sbjct: 382 AIA-TLCEEGMVQEAFSII-QSLGNKQHSSTQEFYKIVITSLCRKGNTYPAFQLLYEMTK 439

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
            G   DS TY+ +I GLC    L+EA   +  ++  +N  D   Y ++I G C+S +   
Sbjct: 440 YGFTPDSFTYSSLIRGLCMEGMLNEAIEIF-SVMEENNKPDTENYNSLILGCCKSRRTDL 498

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
           A+     +V  G  PN   Y ++++G         A ++LRE++      D ++   L++
Sbjct: 499 ALDVFEIMVGKGYLPNETTYTILVEGIIHEKEMDLATKVLRELQLR----DVISQSTLER 554

Query: 500 L 500
           L
Sbjct: 555 L 555



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 106/412 (25%), Positives = 196/412 (47%), Gaps = 9/412 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +  LC    VG A +L   M+  G+  N V+Y +L+ G C  G +  + ++ D +   G+
Sbjct: 139 VSSLCRKGNVGYAMQLVDKMEEYGYPTNTVTYNSLVRGLCMHGNLTQSLQLLDRLIQKGL 198

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +PN+ TYS L+    + R  + A+ L+ ++  +  E      N  ++  L+  LC+EG  
Sbjct: 199 VPNAYTYSFLLEAAYKERGADEASKLLDEIIAKGGEP-----NLVSYNVLLTGLCKEGRT 253

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +  R+  ++P         +   ++ SLC  GR   A+ ++  M     +PS V+YN +
Sbjct: 254 EDAIRLFRELPSKGFSPNVVSYNILLRSLCNEGRWEEANVLLAEMNGDERSPSTVTYNIL 313

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +  L  HG    A ++LEE I+  + P+  +Y  ++  LC +  L+   K L  M+ +  
Sbjct: 314 IGSLALHGRTEHALEVLEEMIRARFKPTASSYNPIIAHLCKDGKLDLVVKCLDQMMYRHC 373

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                  N  +  LC      E  +++  +   Q          VI   C+ G    A +
Sbjct: 374 NPNEGTYNA-IATLCEEGMVQEAFSIIQSLGNKQHSSTQEFYKIVITSLCRKGNTYPAFQ 432

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +L +M    F  PD+ T++++I GL   G + EA+  ++ VM +    P    YN+++ G
Sbjct: 433 LLYEMTKYGF-TPDSFTYSSLIRGLCMEGMLNEAIE-IFSVMEENN-KPDTENYNSLILG 489

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI 412
             + RR + A +VF  M+G G + + TTY I+++G+    ++D A +   ++
Sbjct: 490 CCKSRRTDLALDVFEIMVGKGYLPNETTYTILVEGIIHEKEMDLATKVLREL 541



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 127/239 (53%), Gaps = 5/239 (2%)

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
           L FM++   +PDV     ++   CK  ++ +A+KV+ +M+ G    PDA ++T ++  L 
Sbjct: 85  LEFMVEKGQKPDVFQATQLLYDLCKACKMRKAIKVM-EMMIGSGIIPDASSYTFLVSSLC 143

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
             G +  A+ L+ + M + GY    VTYN+++RGL     + ++ ++ + ++  G+V ++
Sbjct: 144 RKGNVGYAMQLVDK-MEEYGYPTNTVTYNSLVRGLCMHGNLTQSLQLLDRLIQKGLVPNA 202

Query: 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE 446
            TY+ +++   +    DEA +  D+I+      +   Y  ++ GLC+ G+  +A+    E
Sbjct: 203 YTYSFLLEAAYKERGADEASKLLDEIIAKGGEPNLVSYNVLLTGLCKEGRTEDAIRLFRE 262

Query: 447 LVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILD---KLHG 502
           L   G +PN+V YN+++   C      EA  +L EM  +  +P  VT+ IL     LHG
Sbjct: 263 LPSKGFSPNVVSYNILLRSLCNEGRWEEANVLLAEMNGDERSPSTVTYNILIGSLALHG 321


>gi|312190399|gb|ADQ43199.1| unknown [Eutrema parvulum]
          Length = 1128

 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 120/441 (27%), Positives = 210/441 (47%), Gaps = 6/441 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D    + R+ +    F +MKS    P+V++Y +LI+ +C++G++    + + EM+  G+
Sbjct: 175 IDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNSLINCFCKSGKLPKGLEFYREMKQSGL 234

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN ++YS LV    +   +++A     K +  M+    +  N   + +LVD+ C+ G +
Sbjct: 235 KPNVVSYSTLVDAFCKEDMMQQA----IKFYVDMRRVGHVP-NEFTYTSLVDANCKIGNL 289

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           ++ FR+A +M +            +ID LC + R   A ++   M   G+ P+L SYN++
Sbjct: 290 SDAFRLANEMLEVGVEWNVVTYTALIDGLCDAERMKEAEKLFGKMVTAGVIPNLASYNAL 349

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +HG  K     RA +LL E    G  P    Y   + GLCG   +E A+ V+  M     
Sbjct: 350 IHGFVKAKNMDRALELLNELKGRGIQPDLLLYGTFIWGLCGLEKIEAAKVVMNEMQENGI 409

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
              T I    + A     NPTE L++L  M +   +  V+T   +I+G CK   + +A+ 
Sbjct: 410 KANTLIYTTLMDAYFKSGNPTEGLHLLEEMQELDHEVTVVTFCVLIDGLCKNKLVSKAID 469

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
               M       P+A  +T +I GL    +++ A  L  Q M Q G  P    Y +++ G
Sbjct: 470 YFGRMSNDFGLQPNAAVYTAMIDGLCKENQVKAATTLFEQ-MAQEGLVPDRTAYTSLMDG 528

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
             +   + EA  + + M  IG+  D   Y  ++ G  + NQL +A+ F ++++    + D
Sbjct: 529 NLKQGNMLEALALRDKMAEIGMKLDLLAYTSLVWGFSQCNQLQKARSFLEEMIGEEILPD 588

Query: 421 NYVYAAMIKGLCRSGKIHEAV 441
             +   ++K     G I EAV
Sbjct: 589 EVLCIGVLKKHYELGCIDEAV 609



 Score =  168 bits (425), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 117/493 (23%), Positives = 231/493 (46%), Gaps = 8/493 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           + +   L +     + F DM   G  P V +Y  +I    + G+++ A  +F+EM+  G+
Sbjct: 105 LHKFAKLGKTDGVKRFFKDMIGAGSKPTVFTYNIMIDCMWKEGDIEAARGLFEEMKFRGL 164

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P+++TY+ ++ G  +   ++   V  F+  + M  E D+   N+    L++  C+ G +
Sbjct: 165 IPDTVTYNSMIDGYGKVGRLDDT-VYFFEEMKSMSCEPDVITYNS----LINCFCKSGKL 219

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +      +M Q        +   ++D+ C+      A +    MR+ G  P+  +Y S+
Sbjct: 220 PKGLEFYREMKQSGLKPNVVSYSTLVDAFCKEDMMQQAIKFYVDMRRVGHVPNEFTYTSL 279

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           V   CK G    A++L  E ++ G   +  TY  L++GLC    +++A K+   M++   
Sbjct: 280 VDANCKIGNLSDAFRLANEMLEVGVEWNVVTYTALIDGLCDAERMKEAEKLFGKMVTAGV 339

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           +      N  +      KN    L +L  +     QPD++   T I G C + +IE A  
Sbjct: 340 IPNLASYNALIHGFVKAKNMDRALELLNELKGRGIQPDLLLYGTFIWGLCGLEKIEAAKV 399

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           V+N+M      A + + +TT++      G   E L+LL + M +  +   +VT+  ++ G
Sbjct: 400 VMNEMQENGIKA-NTLIYTTLMDAYFKSGNPTEGLHLLEE-MQELDHEVTVVTFCVLIDG 457

Query: 361 LFRLRRVEEAKEVFNCMLG-IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
           L + + V +A + F  M    G+  ++  Y  +IDGLC+ NQ+  A   ++ +     + 
Sbjct: 458 LCKNKLVSKAIDYFGRMSNDFGLQPNAAVYTAMIDGLCKENQVKAATTLFEQMAQEGLVP 517

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           D   Y +++ G  + G + EA+    ++ + G+  +++ Y  ++ G  + +  ++A   L
Sbjct: 518 DRTAYTSLMDGNLKQGNMLEALALRDKMAEIGMKLDLLAYTSLVWGFSQCNQLQKARSFL 577

Query: 480 REMRKNGLNPDAV 492
            EM    + PD V
Sbjct: 578 EEMIGEEILPDEV 590



 Score =  161 bits (408), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 120/504 (23%), Positives = 220/504 (43%), Gaps = 43/504 (8%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           L  L  + EA + F  MK     P   S   L+H + + G+ D   + F +M   G  P 
Sbjct: 73  LIDLGMLEEATQCFSKMKRFRVFPKTRSCNGLLHKFAKLGKTDGVKRFFKDMIGAGSKPT 132

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             TY++++  + +  D+E A      L+E MK    L  +   + +++D   + G +++ 
Sbjct: 133 VFTYNIMIDCMWKEGDIEAAR----GLFEEMKFR-GLIPDTVTYNSMIDGYGKVGRLDDT 187

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
               E+M       +      +I+  C+SG+          M++ GL P++VSY+++V  
Sbjct: 188 VYFFEEMKSMSCEPDVITYNSLINCFCKSGKLPKGLEFYREMKQSGLKPNVVSYSTLVDA 247

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK     +A +   +  + G++P+E TY  LV+                          
Sbjct: 248 FCKEDMMQQAIKFYVDMRRVGHVPNEFTYTSLVD-------------------------- 281

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                    A C I N ++   +   ML+   + +V+T   +I+G C   R++EA K+  
Sbjct: 282 ---------ANCKIGNLSDAFRLANEMLEVGVEWNVVTYTALIDGLCDAERMKEAEKLFG 332

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            MV      P+  ++  +I G +    +  AL LL + +  RG  P ++ Y   + GL  
Sbjct: 333 KMVTAGVI-PNLASYNALIHGFVKAKNMDRALELLNE-LKGRGIQPDLLLYGTFIWGLCG 390

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
           L ++E AK V N M   G+ A++  Y  ++D   +S    E     +++    +      
Sbjct: 391 LEKIEAAKVVMNEMQENGIKANTLIYTTLMDAYFKSGNPTEGLHLLEEMQELDHEVTVVT 450

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELV-DSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
           +  +I GLC++  + +A+ +   +  D G+ PN   Y  +IDG CK +  + A  +  +M
Sbjct: 451 FCVLIDGLCKNKLVSKAIDYFGRMSNDFGLQPNAAVYTAMIDGLCKENQVKAATTLFEQM 510

Query: 483 RKNGLNPDAVTWRILDKLHGNRGN 506
            + GL PD   +  L   +  +GN
Sbjct: 511 AQEGLVPDRTAYTSLMDGNLKQGN 534



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 113/484 (23%), Positives = 222/484 (45%), Gaps = 15/484 (3%)

Query: 13  AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVR 72
           A  LF +MK RG +P+ V+Y ++I GY + G +D     F+EM+     P+ +TY+ L+ 
Sbjct: 152 ARGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNSLIN 211

Query: 73  GVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQ 132
              ++  + +      + +  MK+   L  N  +++ LVD+ C+E  + +  +   DM +
Sbjct: 212 CFCKSGKLPKG----LEFYREMKQS-GLKPNVVSYSTLVDAFCKEDMMQQAIKFYVDMRR 266

Query: 133 GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMR 192
              V  EF    ++D+ C+ G    A R+   M + G+  ++V+Y +++ GLC       
Sbjct: 267 VGHVPNEFTYTSLVDANCKIGNLSDAFRLANEMLEVGVEWNVVTYTALIDGLCDAERMKE 326

Query: 193 AYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLR 252
           A +L  + +  G +P+  +Y  L+ G     ++++A ++L  +  +       +   ++ 
Sbjct: 327 AEKLFGKMVTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIQPDLLLYGTFIW 386

Query: 253 ALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCA 312
            LC ++       V+  M +   + + +   T+++ + K G   E L +L +M       
Sbjct: 387 GLCGLEKIEAAKVVMNEMQENGIKANTLIYTTLMDAYFKSGNPTEGLHLLEEMQELDH-E 445

Query: 313 PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKE 372
              VTF  +I GL     + +A++   ++    G  P    Y A++ GL +  +V+ A  
Sbjct: 446 VTVVTFCVLIDGLCKNKLVSKAIDYFGRMSNDFGLQPNAAVYTAMIDGLCKENQVKAATT 505

Query: 373 VFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLC 432
           +F  M   G+V D T Y  ++DG  +   + EA    D +       D   Y +++ G  
Sbjct: 506 LFEQMAQEGLVPDRTAYTSLMDGNLKQGNMLEALALRDKMAEIGMKLDLLAYTSLVWGFS 565

Query: 433 RSGKIHEAVHFLYELVDSGVTPN-IVCYNVV--------IDGACKLSMKREAYQILREMR 483
           +  ++ +A  FL E++   + P+ ++C  V+        ID A  L      +Q+L    
Sbjct: 566 QCNQLQKARSFLEEMIGEEILPDEVLCIGVLKKHYELGCIDEAVGLQSYLMKHQLLTSDN 625

Query: 484 KNGL 487
            N L
Sbjct: 626 NNAL 629



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 108/459 (23%), Positives = 202/459 (44%), Gaps = 23/459 (5%)

Query: 68  SVLVRGVLRTRDVERANVLMFKLWE-RMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRI 126
           S+L   VL   ++E  +V   +LW  R        V +A F+ L+D     G + E  + 
Sbjct: 31  SILREIVLSKAELEECDVFD-ELWSTRNVCVPGFGVFDALFSVLIDL----GMLEEATQC 85

Query: 127 AEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK 186
              M + +   +  +C  ++    + G+  G  R    M   G  P++ +YN ++  + K
Sbjct: 86  FSKMKRFRVFPKTRSCNGLLHKFAKLGKTDGVKRFFKDMIGAGSKPTVFTYNIMIDCMWK 145

Query: 187 HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRI 246
            G    A  L EE    G +P   TY  +++G      L+      + M S         
Sbjct: 146 EGDIEAARGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVIT 205

Query: 247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV 306
            N  +   C      + L     M Q+  +P+V++ +T+++ FCK   +++A+K   DM 
Sbjct: 206 YNSLINCFCKSGKLPKGLEFYREMKQSGLKPNVVSYSTLVDAFCKEDMMQQAIKFYVDMR 265

Query: 307 AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 366
                 P+  T+T+++     +G + +A  L  +++ + G    +VTY A++ GL    R
Sbjct: 266 RVGH-VPNEFTYTSLVDANCKIGNLSDAFRLANEML-EVGVEWNVVTYTALIDGLCDAER 323

Query: 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAA 426
           ++EA+++F  M+  GV+ +  +Y  +I G  ++  +D A    +++       D  +Y  
Sbjct: 324 MKEAEKLFGKMVTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIQPDLLLYGT 383

Query: 427 MIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK-- 484
            I GLC   KI  A   + E+ ++G+  N + Y  ++D   K     E   +L EM++  
Sbjct: 384 FIWGLCGLEKIEAAKVVMNEMQENGIKANTLIYTTLMDAYFKSGNPTEGLHLLEEMQELD 443

Query: 485 ------------NGLNPDAVTWRILDKLHGNRGNDFGLR 511
                       +GL  + +  + +D   G   NDFGL+
Sbjct: 444 HEVTVVTFCVLIDGLCKNKLVSKAIDYF-GRMSNDFGLQ 481



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 124/253 (49%), Gaps = 4/253 (1%)

Query: 247 CNIYLRALCLIKNPTELLNVLVFMLQTQ--CQPDVITLNTVINGFCKMGRIEEALKVLND 304
            N  LR + L K   E  +V   +  T+  C P     + + +    +G +EEA +  + 
Sbjct: 29  ANSILREIVLSKAELEECDVFDELWSTRNVCVPGFGVFDALFSVLIDLGMLEEATQCFSK 88

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
           M   +   P   +   ++     +G+  + +   ++ M   G  P + TYN ++  +++ 
Sbjct: 89  MKRFR-VFPKTRSCNGLLHKFAKLGKT-DGVKRFFKDMIGAGSKPTVFTYNIMIDCMWKE 146

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY 424
             +E A+ +F  M   G++ D+ TY  +IDG  +  +LD+   F++++   S   D   Y
Sbjct: 147 GDIEAARGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITY 206

Query: 425 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484
            ++I   C+SGK+ + + F  E+  SG+ PN+V Y+ ++D  CK  M ++A +   +MR+
Sbjct: 207 NSLINCFCKSGKLPKGLEFYREMKQSGLKPNVVSYSTLVDAFCKEDMMQQAIKFYVDMRR 266

Query: 485 NGLNPDAVTWRIL 497
            G  P+  T+  L
Sbjct: 267 VGHVPNEFTYTSL 279


>gi|302816356|ref|XP_002989857.1| hypothetical protein SELMODRAFT_45144 [Selaginella moellendorffii]
 gi|300142423|gb|EFJ09124.1| hypothetical protein SELMODRAFT_45144 [Selaginella moellendorffii]
          Length = 394

 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 119/437 (27%), Positives = 200/437 (45%), Gaps = 43/437 (9%)

Query: 16  LFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVL 75
           L  +MK+ G  P +V++ +LI   C     + A ++F +M    V P++  Y+V++  + 
Sbjct: 1   LLGEMKAAGITPTIVTFGSLIRKLCELNFTNKALQIFHQMIDMKVKPDAFLYTVVIGHLC 60

Query: 76  RTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKS 135
           +   ++    L    +E+M +   L  +   +  LV SL +          A    QG  
Sbjct: 61  KINKLD----LAASYFEQMVQSGCLP-DKVTYTVLVHSLFK----------ACKWEQGHQ 105

Query: 136 VNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQ 195
           + EE                         M  +G +P LV+Y ++V+G CK G   +A  
Sbjct: 106 IFEE-------------------------MLSKGHSPELVTYATVVNGYCKAGRIDQALS 140

Query: 196 LLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALC 255
           L+      G  PS   Y  L++GLC     E+AR++  F ++  DV    +   ++  LC
Sbjct: 141 LMRRLKGTGRSPSGSLYSTLIDGLCKHDRHEEAREL--FEMAAGDVQDVIVYTSFISGLC 198

Query: 256 LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA 315
                 E   V V M++  C PD ++ N +I   CK  R+ EA K L D    + C P  
Sbjct: 199 KAGKLDEAKAVHVKMIEAGCAPDPVSYNVIIYSLCKDNRVSEA-KELMDQAMERKCMPGV 257

Query: 316 VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN 375
              T ++ GL    R++EA  +L +++     +P +VTY+AV+ GL +  R+++A  V  
Sbjct: 258 PVCTVLVDGLCKSRRVEEACVILERMLEAGDRAPSVVTYSAVIDGLCKADRLDDAYIVLQ 317

Query: 376 CMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG 435
            M   G V D  TY  +ID  C+  +LDEA+  +  +       D   Y  +I+G CR+ 
Sbjct: 318 KMRRAGCVPDVVTYTAIIDAFCKVGRLDEARELFQRMHERGCASDVVAYNILIRGYCRAA 377

Query: 436 KIHEAVHFLYELVDSGV 452
           K+ EA+  + E+   G+
Sbjct: 378 KVDEAIAMIEEMAGRGI 394



 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 120/437 (27%), Positives = 202/437 (46%), Gaps = 49/437 (11%)

Query: 54  EMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAF--ANLV 111
           EM+  G+ P  +T+  L+R +       +A     +++ +M    D+ V   AF    ++
Sbjct: 4   EMKAAGITPTIVTFGSLIRKLCELNFTNKA----LQIFHQMI---DMKVKPDAFLYTVVI 56

Query: 112 DSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLT 171
             LC+   ++      E M Q   + ++     ++ SL ++ +     ++   M  +G +
Sbjct: 57  GHLCKINKLDLAASYFEQMVQSGCLPDKVTYTVLVHSLFKACKWEQGHQIFEEMLSKGHS 116

Query: 172 PSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKV 231
           P LV+Y ++V+G CK G   +A  L+      G  PS   Y  L++GLC     E+AR++
Sbjct: 117 PELVTYATVVNGYCKAGRIDQALSLMRRLKGTGRSPSGSLYSTLIDGLCKHDRHEEAREL 176

Query: 232 LQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK 291
             F ++  DV                                    DVI   + I+G CK
Sbjct: 177 --FEMAAGDVQ-----------------------------------DVIVYTSFISGLCK 199

Query: 292 MGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGI 351
            G+++EA  V   M+    CAPD V++  II+ L    R+ EA  L+ Q M +R   PG+
Sbjct: 200 AGKLDEAKAVHVKMIEAG-CAPDPVSYNVIIYSLCKDNRVSEAKELMDQAM-ERKCMPGV 257

Query: 352 VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADST-TYAIVIDGLCESNQLDEAKRFWD 410
                ++ GL + RRVEEA  +   ML  G  A S  TY+ VIDGLC++++LD+A     
Sbjct: 258 PVCTVLVDGLCKSRRVEEACVILERMLEAGDRAPSVVTYSAVIDGLCKADRLDDAYIVLQ 317

Query: 411 DIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLS 470
            +     + D   Y A+I   C+ G++ EA      + + G   ++V YN++I G C+ +
Sbjct: 318 KMRRAGCVPDVVTYTAIIDAFCKVGRLDEARELFQRMHERGCASDVVAYNILIRGYCRAA 377

Query: 471 MKREAYQILREMRKNGL 487
              EA  ++ EM   G+
Sbjct: 378 KVDEAIAMIEEMAGRGI 394



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 109/383 (28%), Positives = 195/383 (50%), Gaps = 14/383 (3%)

Query: 3   QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           +LC L+   +A ++F  M      P+   YT +I   C+  ++D+A   F++M   G LP
Sbjct: 23  KLCELNFTNKALQIFHQMIDMKVKPDAFLYTVVIGHLCKINKLDLAASYFEQMVQSGCLP 82

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           + +TY+VLV  + +    E+ + +  ++  +    E ++     +A +V+  C+ G +++
Sbjct: 83  DKVTYTVLVHSLFKACKWEQGHQIFEEMLSKGHSPELVT-----YATVVNGYCKAGRIDQ 137

Query: 123 VFRIAEDMP-QGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
              +   +   G+S +       +ID LC+  R H  +R ++ M   G    ++ Y S +
Sbjct: 138 ALSLMRRLKGTGRSPSGSLY-STLIDGLCKHDR-HEEARELFEM-AAGDVQDVIVYTSFI 194

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
            GLCK G    A  +  + I+ G  P   +Y V++  LC ++ + +A++++   + +K +
Sbjct: 195 SGLCKAGKLDEAKAVHVKMIEAGCAPDPVSYNVIIYSLCKDNRVSEAKELMDQAMERKCM 254

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQT-QCQPDVITLNTVINGFCKMGRIEEALK 300
               +C + +  LC  +   E   +L  ML+     P V+T + VI+G CK  R+++A  
Sbjct: 255 PGVPVCTVLVDGLCKSRRVEEACVILERMLEAGDRAPSVVTYSAVIDGLCKADRLDDAYI 314

Query: 301 VLNDM-VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           VL  M  AG  C PD VT+T II     VGR+ EA   L+Q M +RG +  +V YN ++R
Sbjct: 315 VLQKMRRAG--CVPDVVTYTAIIDAFCKVGRLDEARE-LFQRMHERGCASDVVAYNILIR 371

Query: 360 GLFRLRRVEEAKEVFNCMLGIGV 382
           G  R  +V+EA  +   M G G+
Sbjct: 372 GYCRAAKVDEAIAMIEEMAGRGI 394



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 108/398 (27%), Positives = 185/398 (46%), Gaps = 52/398 (13%)

Query: 107 FANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMR 166
           F +L+  LC   + N+  +I   M   K   + F    +I  LC+  +   A+     M 
Sbjct: 17  FGSLIRKLCELNFTNKALQIFHQMIDMKVKPDAFLYTVVIGHLCKINKLDLAASYFEQMV 76

Query: 167 KRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLE 226
           + G  P  V+Y  +VH L K     + +Q+ EE +  G+ P   TY  +V G C    ++
Sbjct: 77  QSGCLPDKVTYTVLVHSLFKACKWEQGHQIFEEMLSKGHSPELVTYATVVNGYCKAGRID 136

Query: 227 KARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVI 286
           +A   L  M   K   R+   ++Y                                +T+I
Sbjct: 137 QA---LSLMRRLKGTGRSPSGSLY--------------------------------STLI 161

Query: 287 NGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
           +G CK  R EEA + L +M AG     D + +T+ I GL   G++ EA   ++  M + G
Sbjct: 162 DGLCKHDRHEEA-RELFEMAAGDV--QDVIVYTSFISGLCKAGKLDEA-KAVHVKMIEAG 217

Query: 347 YSPGIVTYNAVLRGLFRLRRVEEAKEVFN------CMLGIGVVADSTTYAIVIDGLCESN 400
            +P  V+YN ++  L +  RV EAKE+ +      CM G+ V        +++DGLC+S 
Sbjct: 218 CAPDPVSYNVIIYSLCKDNRVSEAKELMDQAMERKCMPGVPVCT------VLVDGLCKSR 271

Query: 401 QLDEAKRFWDDIVWPSNIHDNYV-YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCY 459
           +++EA    + ++   +   + V Y+A+I GLC++ ++ +A   L ++  +G  P++V Y
Sbjct: 272 RVEEACVILERMLEAGDRAPSVVTYSAVIDGLCKADRLDDAYIVLQKMRRAGCVPDVVTY 331

Query: 460 NVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
             +ID  CK+    EA ++ + M + G   D V + IL
Sbjct: 332 TAIIDAFCKVGRLDEARELFQRMHERGCASDVVAYNIL 369



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 97/367 (26%), Positives = 169/367 (46%), Gaps = 77/367 (20%)

Query: 165 MRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESD 224
           M+  G+TP++V++ S++  LC+     +A Q+  + I     P    Y V++  LC  + 
Sbjct: 5   MKAAGITPTIVTFGSLIRKLCELNFTNKALQIFHQMIDMKVKPDAFLYTVVIGHLCKINK 64

Query: 225 LEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNT 284
           L+ A    + M+                                   Q+ C PD +T   
Sbjct: 65  LDLAASYFEQMV-----------------------------------QSGCLPDKVTYTV 89

Query: 285 VINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ 344
           +++   K  + E+  ++  +M++ K  +P+ VT+ T++ G    GRI +AL+L+ + +  
Sbjct: 90  LVHSLFKACKWEQGHQIFEEMLS-KGHSPELVTYATVVNGYCKAGRIDQALSLMRR-LKG 147

Query: 345 RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 404
            G SP    Y+ ++ GL +  R EEA+E+F   +  G V D   Y   I GLC++ +LDE
Sbjct: 148 TGRSPSGSLYSTLIDGLCKHDRHEEARELFE--MAAGDVQDVIVYTSFISGLCKAGKLDE 205

Query: 405 AKRF---------------WDDIVWPSNIHDNYVYAA---------------------MI 428
           AK                 ++ I++ S   DN V  A                     ++
Sbjct: 206 AKAVHVKMIEAGCAPDPVSYNVIIY-SLCKDNRVSEAKELMDQAMERKCMPGVPVCTVLV 264

Query: 429 KGLCRSGKIHEAVHFLYELVDSG-VTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
            GLC+S ++ EA   L  ++++G   P++V Y+ VIDG CK     +AY +L++MR+ G 
Sbjct: 265 DGLCKSRRVEEACVILERMLEAGDRAPSVVTYSAVIDGLCKADRLDDAYIVLQKMRRAGC 324

Query: 488 NPDAVTW 494
            PD VT+
Sbjct: 325 VPDVVTY 331



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 80/156 (51%)

Query: 342 MPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ 401
           M   G +P IVT+ +++R L  L    +A ++F+ M+ + V  D+  Y +VI  LC+ N+
Sbjct: 5   MKAAGITPTIVTFGSLIRKLCELNFTNKALQIFHQMIDMKVKPDAFLYTVVIGHLCKINK 64

Query: 402 LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNV 461
           LD A  +++ +V    + D   Y  ++  L ++ K  +      E++  G +P +V Y  
Sbjct: 65  LDLAASYFEQMVQSGCLPDKVTYTVLVHSLFKACKWEQGHQIFEEMLSKGHSPELVTYAT 124

Query: 462 VIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           V++G CK     +A  ++R ++  G +P    +  L
Sbjct: 125 VVNGYCKAGRIDQALSLMRRLKGTGRSPSGSLYSTL 160



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 53/93 (56%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   R+ +A+ +   M+  G VP+VV+YT +I  +C+ G +D A ++F  M   G 
Sbjct: 300 IDGLCKADRLDDAYIVLQKMRRAGCVPDVVTYTAIIDAFCKVGRLDEARELFQRMHERGC 359

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWER 93
             + + Y++L+RG  R   V+ A  ++ ++  R
Sbjct: 360 ASDVVAYNILIRGYCRAAKVDEAIAMIEEMAGR 392



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 35/60 (58%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C + R+ EA +LF  M  RG   +VV+Y  LI GYCR  ++D A  + +EM   G+
Sbjct: 335 IDAFCKVGRLDEARELFQRMHERGCASDVVAYNILIRGYCRAAKVDEAIAMIEEMAGRGI 394


>gi|15234269|ref|NP_192906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213756|sp|Q9T0D6.1|PP306_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g11690
 gi|4539460|emb|CAB39940.1| putative protein [Arabidopsis thaliana]
 gi|7267869|emb|CAB78212.1| putative protein [Arabidopsis thaliana]
 gi|91806660|gb|ABE66057.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332657639|gb|AEE83039.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 566

 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 118/498 (23%), Positives = 228/498 (45%), Gaps = 18/498 (3%)

Query: 11  GEAHKLFFDMKSRGHVPNVVS--------YTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           G+ H  FF   S  H              Y  +I+ Y ++  ++++   F+EM   G +P
Sbjct: 68  GKIHSQFFTSSSLLHYLTESETSKTKFRLYEVIINSYVQSQSLNLSISYFNEMVDNGFVP 127

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNA-AFANLVDSLCREGYVN 121
            S  ++ L+  V+ +    +        W    E +   V +  +F  L+   C  G + 
Sbjct: 128 GSNCFNYLLTFVVGSSSFNQ-------WWSFFNENKSKVVLDVYSFGILIKGCCEAGEIE 180

Query: 122 EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
           + F +  ++ +            +ID  C+ G    A  + + M K GL  +  +Y  ++
Sbjct: 181 KSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTVLI 240

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
           +GL K+G   + +++ E+  + G  P+ +TY  ++  LC +   + A +V   M  +   
Sbjct: 241 NGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVS 300

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
                 N  +  LC      E   V+  M      P++IT NT+I+GFC +G++ +AL +
Sbjct: 301 CNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSL 360

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
             D+   +  +P  VT+  ++ G    G    A  ++ + M +RG  P  VTY  ++   
Sbjct: 361 CRDL-KSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKE-MEERGIKPSKVTYTILIDTF 418

Query: 362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
            R   +E+A ++   M  +G+V D  TY+++I G C   Q++EA R +  +V  +   + 
Sbjct: 419 ARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNE 478

Query: 422 YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
            +Y  MI G C+ G  + A+  L E+ +  + PN+  Y  +I+  CK    +EA +++ +
Sbjct: 479 VIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIEVLCKERKSKEAERLVEK 538

Query: 482 MRKNGLNPDAVTWRILDK 499
           M  +G++P      ++ +
Sbjct: 539 MIDSGIDPSTSILSLISR 556



 Score =  168 bits (425), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 110/393 (27%), Positives = 206/393 (52%), Gaps = 17/393 (4%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C    + ++  L  ++   G  PNVV YTTLI G C+ GE++ A  +F EM   G++ N 
Sbjct: 174 CEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANE 233

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
            TY+VL+ G+ +    ++     F+++E+M +E+ +  N   +  +++ LC++G   + F
Sbjct: 234 RTYTVLINGLFKNGVKKQG----FEMYEKM-QEDGVFPNLYTYNCVMNQLCKDGRTKDAF 288

Query: 125 RIAEDM-PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           ++ ++M  +G S N       +I  LCR  + + A++VV  M+  G+ P+L++YN+++ G
Sbjct: 289 QVFDEMRERGVSCN-IVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDG 347

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM----LSKK 239
            C  G   +A  L  +    G  PS  TY +LV G C + D   A K+++ M    +   
Sbjct: 348 FCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPS 407

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
            V  T + + + R+     N  + + + + M +    PDV T + +I+GFC  G++ EA 
Sbjct: 408 KVTYTILIDTFARS----DNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEAS 463

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           ++   MV  K C P+ V + T+I G    G    AL LL + M ++  +P + +Y  ++ 
Sbjct: 464 RLFKSMVE-KNCEPNEVIYNTMILGYCKEGSSYRALKLLKE-MEEKELAPNVASYRYMIE 521

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIV 392
            L + R+ +EA+ +   M+  G+   ++  +++
Sbjct: 522 VLCKERKSKEAERLVEKMIDSGIDPSTSILSLI 554



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/306 (26%), Positives = 137/306 (44%), Gaps = 40/306 (13%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M+QLC   R  +A ++F +M+ RG   N+V+Y TLI G CR  +++ A KV D+M+  G+
Sbjct: 275 MNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGI 334

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +TY+ L+ G      + +A  L   L  R      LS +   +  LV   CR+   
Sbjct: 335 NPNLITYNTLIDGFCGVGKLGKALSLCRDLKSR-----GLSPSLVTYNILVSGFCRK--- 386

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                                           G   GA+++V  M +RG+ PS V+Y  +
Sbjct: 387 --------------------------------GDTSGAAKMVKEMEERGIKPSKVTYTIL 414

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +    +     +A QL     + G +P  HTY VL+ G C +  + +A ++ + M+ K  
Sbjct: 415 IDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNC 474

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                I N  +   C   +    L +L  M + +  P+V +   +I   CK  + +EA +
Sbjct: 475 EPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIEVLCKERKSKEAER 534

Query: 301 VLNDMV 306
           ++  M+
Sbjct: 535 LVEKMI 540



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/208 (30%), Positives = 111/208 (53%), Gaps = 5/208 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  CG+ ++G+A  L  D+KSRG  P++V+Y  L+ G+CR G+   A K+  EM   G+
Sbjct: 345 IDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGI 404

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TY++L+    R+ ++E+A  L   +     EE  L  +   ++ L+   C +G +
Sbjct: 405 KPSKVTYTILIDTFARSDNMEKAIQLRLSM-----EELGLVPDVHTYSVLIHGFCIKGQM 459

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           NE  R+ + M +      E     MI   C+ G ++ A +++  M ++ L P++ SY  +
Sbjct: 460 NEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYM 519

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPS 208
           +  LCK      A +L+E+ I  G  PS
Sbjct: 520 IEVLCKERKSKEAERLVEKMIDSGIDPS 547



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 129/250 (51%), Gaps = 5/250 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   ++ EA+K+   MKS G  PN+++Y TLI G+C  G++  A  +  +++  G+ P+
Sbjct: 313 LCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPS 372

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY++LV G  R  D   A     K+ + M EE  +  +   +  L+D+  R   + + 
Sbjct: 373 LVTYNILVSGFCRKGDTSGAA----KMVKEM-EERGIKPSKVTYTILIDTFARSDNMEKA 427

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            ++   M +   V +      +I   C  G+ + ASR+   M ++   P+ V YN+++ G
Sbjct: 428 IQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILG 487

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK G   RA +LL+E  +    P+  +Y+ ++E LC E   ++A ++++ M+       
Sbjct: 488 YCKEGSSYRALKLLKEMEEKELAPNVASYRYMIEVLCKERKSKEAERLVEKMIDSGIDPS 547

Query: 244 TRICNIYLRA 253
           T I ++  RA
Sbjct: 548 TSILSLISRA 557


>gi|147834641|emb|CAN60904.1| hypothetical protein VITISV_016343 [Vitis vinifera]
          Length = 580

 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 108/396 (27%), Positives = 202/396 (51%), Gaps = 7/396 (1%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           ++ +A +    M+  G  PNVVSY T+IHGY   G ++ A ++ D MR  G+ P+S TY 
Sbjct: 188 KLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYG 247

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
            L+ G+ +   +E A+ L  K+ E       L  N   +  L+D  C +G +   F   +
Sbjct: 248 SLISGMCKEGRLEEASGLFDKMVEI-----GLVPNAVTYNTLIDGYCNKGDLERAFSYRD 302

Query: 129 DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188
           +M +   +        ++ +L   GR   A  ++  MRK+G+ P  ++YN +++G  + G
Sbjct: 303 EMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCG 362

Query: 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 248
              RA+ L  E +  G  P+  TY  L+  L   + +++A  + + +L +       + N
Sbjct: 363 NAKRAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFN 422

Query: 249 IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 308
             +   C   N      +L  M +    PD +T NT++ G C+ G++EEA  +L++M   
Sbjct: 423 AMIDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEM-KX 481

Query: 309 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE 368
           +   PD +++ T+I G    G I++A  +  +++   G++P ++TYNA+++ L + +  +
Sbjct: 482 RGIKPDHISYNTLISGYGRRGDIKDAFXVRDEML-SIGFNPTLLTYNALIKCLCKNQEGD 540

Query: 369 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 404
            A+E+   M+  G+  D +TY  +I+G+   + L E
Sbjct: 541 LAEELLKEMVNKGISPDDSTYLSLIEGMGNVDTLVE 576



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 103/351 (29%), Positives = 178/351 (50%), Gaps = 2/351 (0%)

Query: 153 GRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTY 212
           G   GA R++  MR +G+ P   +Y S++ G+CK G    A  L ++ ++ G +P+  TY
Sbjct: 222 GNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTY 281

Query: 213 KVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQ 272
             L++G C + DLE+A      M+ K  +      N+ + AL +     E  +++  M +
Sbjct: 282 NTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRK 341

Query: 273 TQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQ 332
               PD IT N +ING+ + G  + A  + N+M++ K   P  VT+T++I+ L    R++
Sbjct: 342 KGIIPDAITYNILINGYSRCGNAKRAFDLHNEMLS-KGIEPTHVTYTSLIYVLSRRNRMK 400

Query: 333 EALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIV 392
           EA +L  +++ Q G SP ++ +NA++ G      VE A  +   M    V  D  T+  +
Sbjct: 401 EADDLFEKILDQ-GVSPDVIMFNAMIDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTL 459

Query: 393 IDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGV 452
           + G C   +++EA+   D++       D+  Y  +I G  R G I +A     E++  G 
Sbjct: 460 MQGRCREGKVEEARMLLDEMKXRGIKPDHISYNTLISGYGRRGDIKDAFXVRDEMLSIGF 519

Query: 453 TPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGN 503
            P ++ YN +I   CK      A ++L+EM   G++PD  T+  L +  GN
Sbjct: 520 NPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEGMGN 570



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 97/354 (27%), Positives = 163/354 (46%), Gaps = 37/354 (10%)

Query: 153 GRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTY 212
           G+   A   +  M   G  P++VSYN+I+HG    G    A ++L+     G  P  +TY
Sbjct: 187 GKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTY 246

Query: 213 KVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQ 272
             L+ G+C E  LE+A  +          D+                          M++
Sbjct: 247 GSLISGMCKEGRLEEASGLF---------DK--------------------------MVE 271

Query: 273 TQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQ 332
               P+ +T NT+I+G+C  G +E A    ++MV  K   P   T+  ++  L   GR+ 
Sbjct: 272 IGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVK-KGIMPSVSTYNLLVHALFMEGRMG 330

Query: 333 EALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIV 392
           EA +++ + M ++G  P  +TYN ++ G  R    + A ++ N ML  G+     TY  +
Sbjct: 331 EADDMIKE-MRKKGIIPDAITYNILINGYSRCGNAKRAFDLHNEMLSKGIEPTHVTYTSL 389

Query: 393 IDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGV 452
           I  L   N++ EA   ++ I+      D  ++ AMI G C +G +  A   L E+    V
Sbjct: 390 IYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMIDGHCANGNVERAFMLLKEMDRKSV 449

Query: 453 TPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
            P+ V +N ++ G C+     EA  +L EM+  G+ PD +++  L   +G RG+
Sbjct: 450 PPDEVTFNTLMQGRCREGKVEEARMLLDEMKXRGIKPDHISYNTLISGYGRRGD 503



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 88/330 (26%), Positives = 155/330 (46%), Gaps = 6/330 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           +C   R+ EA  LF  M   G VPN V+Y TLI GYC  G+++ A+   DEM   G++P+
Sbjct: 253 MCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPS 312

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             TY++LV  +     +  A+ ++ ++ ++    + ++ N      L++   R G     
Sbjct: 313 VSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYN-----ILINGYSRCGNAKRA 367

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           F +  +M              +I  L R  R   A  +   +  +G++P ++ +N+++ G
Sbjct: 368 FDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMIDG 427

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            C +G   RA+ LL+E  +    P E T+  L++G C E  +E+AR +L  M  +     
Sbjct: 428 HCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKXRGIKPD 487

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               N  +       +  +   V   ML     P ++T N +I   CK    + A ++L 
Sbjct: 488 HISYNTLISGYGRRGDIKDAFXVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLK 547

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQE 333
           +MV  K  +PD  T+ ++I G+ NV  + E
Sbjct: 548 EMV-NKGISPDDSTYLSLIEGMGNVDTLVE 576



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 97/179 (54%), Gaps = 2/179 (1%)

Query: 319 TTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCML 378
           ++I+F LL  G++++A   +   M   G+ P +V+YN ++ G      +E A+ + + M 
Sbjct: 178 SSIVFDLLE-GKLKKAREFI-GFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMR 235

Query: 379 GIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIH 438
             G+  DS TY  +I G+C+  +L+EA   +D +V    + +   Y  +I G C  G + 
Sbjct: 236 VKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLE 295

Query: 439 EAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            A  +  E+V  G+ P++  YN+++          EA  +++EMRK G+ PDA+T+ IL
Sbjct: 296 RAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNIL 354



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 63/114 (55%), Gaps = 5/114 (4%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M   C   +V EA  L  +MK RG  P+ +SY TLI GY R G++  A+ V DEM   G 
Sbjct: 460 MQGRCREGKVEEARMLLDEMKXRGIKPDHISYNTLISGYGRRGDIKDAFXVRDEMLSIGF 519

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSL 114
            P  LTY+ L++ + + ++ + A  L+ ++  +      +S +++ + +L++ +
Sbjct: 520 NPTLLTYNALIKCLCKNQEGDLAEELLKEMVNK-----GISPDDSTYLSLIEGM 568



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 46/83 (55%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C    V  A  L  +M  +   P+ V++ TL+ G CR G+++ A  + DEM+  G+
Sbjct: 425 IDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKXRGI 484

Query: 61  LPNSLTYSVLVRGVLRTRDVERA 83
            P+ ++Y+ L+ G  R  D++ A
Sbjct: 485 KPDHISYNTLISGYGRRGDIKDA 507


>gi|242047602|ref|XP_002461547.1| hypothetical protein SORBIDRAFT_02g004530 [Sorghum bicolor]
 gi|241924924|gb|EER98068.1| hypothetical protein SORBIDRAFT_02g004530 [Sorghum bicolor]
          Length = 696

 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 126/502 (25%), Positives = 223/502 (44%), Gaps = 28/502 (5%)

Query: 4   LCGLSRVGEAHKLFFD-MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCG--V 60
           LC   R  +A  +    M   G  P+V SYTTL+ G C   + + A ++   M   G   
Sbjct: 189 LCAEKRTSDAMNIVLRRMPELGCTPDVFSYTTLLKGLCAEKKCEEAAELIHMMAEDGDNC 248

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN ++Y+ ++ G  +  DV +A  L  K+ +       ++ N     +++D LC+   +
Sbjct: 249 PPNVVSYTTVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCN-----SVIDGLCKVQAM 303

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           ++   + + M     +        +I     SG+   A R++  M + G  P++V+Y+ +
Sbjct: 304 DKAEAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYSML 363

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +  LCK G    A ++    IQ G  P+  TY  L+ G   E +L     V   M+    
Sbjct: 364 IDCLCKSGLHAEAREIFNSMIQSGQKPNASTYGSLLHGYATEGNLVDMNNVKDLMVQNGM 423

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                + NI + A C      E       M Q    PD++   TVI+G CK+GR+++A+ 
Sbjct: 424 RPGRHVFNIEIYAYCKCGRLDEASLTFNKMQQQGFMPDIVAYTTVIDGLCKIGRLDDAMS 483

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
               M+     +PD +TF T+I G    G+ ++A  L Y++M  RG  P + T+N+++  
Sbjct: 484 RFCQMIDDGL-SPDIITFNTLIHGFALHGKWEKAEELFYEMM-DRGIPPNVNTFNSMIDK 541

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           LF+  +V EA+++F+ M   G   +  +Y  +I G   + ++ E  +  DD++       
Sbjct: 542 LFKEGKVTEARKLFDLMPRAGAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDMLLIGLKPT 601

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              +  ++ G                +V  G+ P++V    +ID  C+     +   + R
Sbjct: 602 AVTFNTLLDG----------------MVSMGLKPDVVTCKTLIDSCCEDGRIEDILTLFR 645

Query: 481 EMRKNGLNPDAVTWRILDKLHG 502
           EM       D +T  I  KL G
Sbjct: 646 EMLGKADKTDTITENI--KLRG 665



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 126/467 (26%), Positives = 221/467 (47%), Gaps = 25/467 (5%)

Query: 47  VAYKVFDEMRHCG---VLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVN 103
           +A  +F+ M   G   V P+  T+ +L+       D    N+    L + +K    L   
Sbjct: 124 LAVSMFNRMARAGAKKVAPDIATFGILISCCC---DAGCLNLGFAALGQIIKT--GLRAQ 178

Query: 104 NAAFANLVDSLCREGYVNEVFRIA-EDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVV 162
              F  L+ +LC E   ++   I    MP+     + F+   ++  LC   +   A+ ++
Sbjct: 179 AVTFTPLLRTLCAEKRTSDAMNIVLRRMPELGCTPDVFSYTTLLKGLCAEKKCEEAAELI 238

Query: 163 YVMRKRG--LTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLC 220
           ++M + G    P++VSY +++HG  K G   +AY L  + +  G  P+  T   +++GLC
Sbjct: 239 HMMAEDGDNCPPNVVSYTTVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLC 298

Query: 221 GESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVI 280
               ++KA  VLQ M+ +  +      N  +         TE + +L  M +   +P+V+
Sbjct: 299 KVQAMDKAEAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVV 358

Query: 281 TLNTVINGFCKMGRIEEALKVLNDMV-AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLY 339
           T + +I+  CK G   EA ++ N M+ +G+   P+A T+ +++ G    G + + +N + 
Sbjct: 359 TYSMLIDCLCKSGLHAEAREIFNSMIQSGQ--KPNASTYGSLLHGYATEGNLVD-MNNVK 415

Query: 340 QVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCES 399
            +M Q G  PG   +N  +    +  R++EA   FN M   G + D   Y  VIDGLC+ 
Sbjct: 416 DLMVQNGMRPGRHVFNIEIYAYCKCGRLDEASLTFNKMQQQGFMPDIVAYTTVIDGLCKI 475

Query: 400 NQLDEA-KRFW---DDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN 455
            +LD+A  RF    DD + P    D   +  +I G    GK  +A    YE++D G+ PN
Sbjct: 476 GRLDDAMSRFCQMIDDGLSP----DIITFNTLIHGFALHGKWEKAEELFYEMMDRGIPPN 531

Query: 456 IVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
           +  +N +ID   K     EA ++   M + G  P+ V++  +  +HG
Sbjct: 532 VNTFNSMIDKLFKEGKVTEARKLFDLMPRAGAKPNVVSYNTM--IHG 576



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 116/475 (24%), Positives = 214/475 (45%), Gaps = 14/475 (2%)

Query: 38  GYC-RTGEM--DVAYKVFDEMRHCGVLPNSLTYSVLVRGVLR---TRDVERANVLMFKLW 91
           G C R+G++  + A  +FDE+       +    + L+  V R   +  V     L   ++
Sbjct: 70  GECYRSGDLGPEDALDLFDELLQRARPGSIYALNQLLTTVARAPVSSSVRDGPALAVSMF 129

Query: 92  ERMKEE--EDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSL 149
            RM     + ++ + A F  L+   C  G +N  F     + +     +      ++ +L
Sbjct: 130 NRMARAGAKKVAPDIATFGILISCCCDAGCLNLGFAALGQIIKTGLRAQAVTFTPLLRTL 189

Query: 150 CRSGRNHGASRVVYV-MRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG--YL 206
           C   R   A  +V   M + G TP + SY +++ GLC    C  A +L+    + G    
Sbjct: 190 CAEKRTSDAMNIVLRRMPELGCTPDVFSYTTLLKGLCAEKKCEEAAELIHMMAEDGDNCP 249

Query: 207 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 266
           P+  +Y  ++ G   E D+ KA  +   ML          CN  +  LC ++   +   V
Sbjct: 250 PNVVSYTTVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEAV 309

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
           L  M+     P+  T N++I+G+   G+  EA+++L +M +     P+ VT++ +I  L 
Sbjct: 310 LQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEM-SRDGQRPNVVTYSMLIDCLC 368

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
             G   EA  + +  M Q G  P   TY ++L G      + +   V + M+  G+    
Sbjct: 369 KSGLHAEAREI-FNSMIQSGQKPNASTYGSLLHGYATEGNLVDMNNVKDLMVQNGMRPGR 427

Query: 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE 446
             + I I   C+  +LDEA   ++ +     + D   Y  +I GLC+ G++ +A+    +
Sbjct: 428 HVFNIEIYAYCKCGRLDEASLTFNKMQQQGFMPDIVAYTTVIDGLCKIGRLDDAMSRFCQ 487

Query: 447 LVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW-RILDKL 500
           ++D G++P+I+ +N +I G        +A ++  EM   G+ P+  T+  ++DKL
Sbjct: 488 MIDDGLSPDIITFNTLIHGFALHGKWEKAEELFYEMMDRGIPPNVNTFNSMIDKL 542



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 96/396 (24%), Positives = 175/396 (44%), Gaps = 23/396 (5%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC +  + +A  +   M     +PN  +Y +LIHGY  +G+   A ++  EM   G 
Sbjct: 294 IDGLCKVQAMDKAEAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQ 353

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +TYS+L+  + ++     A  +   + +  ++      N + + +L+     EG +
Sbjct: 354 RPNVVTYSMLIDCLCKSGLHAEAREIFNSMIQSGQKP-----NASTYGSLLHGYATEGNL 408

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            ++  + + M Q             I + C+ GR   AS     M+++G  P +V+Y ++
Sbjct: 409 VDMNNVKDLMVQNGMRPGRHVFNIEIYAYCKCGRLDEASLTFNKMQQQGFMPDIVAYTTV 468

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GLCK G    A     + I  G  P   T+  L+ G       EKA ++   M+ +  
Sbjct: 469 IDGLCKIGRLDDAMSRFCQMIDDGLSPDIITFNTLIHGFALHGKWEKAEELFYEMMDRGI 528

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                  N  +  L      TE   +   M +   +P+V++ NT+I+G+   G + E +K
Sbjct: 529 PPNVNTFNSMIDKLFKEGKVTEARKLFDLMPRAGAKPNVVSYNTMIHGYFIAGEVGEVMK 588

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +L+DM+      P AVTF T++ G++++                 G  P +VT   ++  
Sbjct: 589 LLDDMLLIGL-KPTAVTFNTLLDGMVSM-----------------GLKPDVVTCKTLIDS 630

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 396
                R+E+   +F  MLG     D+ T  I + G+
Sbjct: 631 CCEDGRIEDILTLFREMLGKADKTDTITENIKLRGV 666


>gi|297727505|ref|NP_001176116.1| Os10g0368800 [Oryza sativa Japonica Group]
 gi|20043026|gb|AAM08834.1|AC113335_14 Putative PPR-repeat protein [Oryza sativa Japonica Group]
 gi|22830267|gb|AAN08650.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|31431615|gb|AAP53366.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255679344|dbj|BAH94844.1| Os10g0368800 [Oryza sativa Japonica Group]
          Length = 913

 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 117/424 (27%), Positives = 192/424 (45%), Gaps = 68/424 (16%)

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
           F  G    +LCR GR   A  ++  M + G  P  V Y +++H LC  GG   A  LL E
Sbjct: 176 FTFGVAARALCRLGRADEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNE 235

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
            +  G     +T+  +V G+CG   + +A +++  M++K  +         L+ LC ++ 
Sbjct: 236 MLLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQ 295

Query: 260 PTEL---------LNVLVF----------------------MLQTQCQPDVITLNTVING 288
             E          LNV++F                      M    CQPD  T + +++G
Sbjct: 296 ADEARAMLGRVPELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHG 355

Query: 289 FCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTI--------------------------- 321
            CK+GRI  A+++L +M    F AP+ VT+T +                           
Sbjct: 356 LCKLGRIGSAVRLLREMEKKGF-APNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTL 414

Query: 322 --------IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEV 373
                   I+ L   GR+ EA+ L+ Q M  +G +P I +YN ++  L    ++EEA+ +
Sbjct: 415 NSQGYNGMIYALCKDGRMDEAMGLI-QEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHM 473

Query: 374 FNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR 433
           F  +L  GVVA+  TY  +I  L    +  +A R   +++      D   Y  +IK +C+
Sbjct: 474 FENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCK 533

Query: 434 SGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVT 493
            G +  ++  L E+ + G+ PN V YN++I   CK    R+A ++ ++M   GL PD VT
Sbjct: 534 DGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVT 593

Query: 494 WRIL 497
           +  L
Sbjct: 594 YNTL 597



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 127/476 (26%), Positives = 225/476 (47%), Gaps = 11/476 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC L R  EA  L   M   G VP+ V Y T+IH  C  G +  A  + +EM   G   +
Sbjct: 185 LCRLGRADEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAAD 244

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             T+  +VRG+     V  A     +L +RM  +  +      +  L+  LCR    +E 
Sbjct: 245 VNTFDDVVRGMCGLGRVREAA----RLVDRMMTKGCMP-GVMTYGFLLQGLCRVRQADEA 299

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             +   +P+   V        +I      G+   A+ +   M  +G  P   +Y+ ++HG
Sbjct: 300 RAMLGRVPELNVV----LFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHG 355

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LCK G    A +LL E  + G+ P+  TY +++   C     +  R +L+ M +K     
Sbjct: 356 LCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLN 415

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
           ++  N  + ALC      E + ++  M    C PD+ + NT+I   C   ++EEA  +  
Sbjct: 416 SQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFE 475

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           +++     A + +T+ TII  LL  GR Q+A+ L  +++   G S  +V+YN +++ + +
Sbjct: 476 NLLEEGVVA-NGITYNTIIHALLRDGRWQDAVRLAKEMI-LHGCSLDVVSYNGLIKAMCK 533

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
              V+ +  +   M   G+  ++ +Y I+I  LC+  ++ +A      ++      D   
Sbjct: 534 DGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVT 593

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           Y  +I GLC+ G +H A++ L +L +  V P+I+ YN++I   CK+ +  +A  +L
Sbjct: 594 YNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHCKVRLLDDAAMLL 649



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 109/424 (25%), Positives = 203/424 (47%), Gaps = 41/424 (9%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRT--------------------- 42
           +CGL RV EA +L   M ++G +P V++Y  L+ G CR                      
Sbjct: 255 MCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPELNVVLF 314

Query: 43  ----------GEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWE 92
                     G++  A ++++ M   G  P++ TYS+L+ G+ +   +  A  L+     
Sbjct: 315 NTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLL----- 369

Query: 93  RMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDM-PQGKSVNEEFACGHMIDSLCR 151
           R  E++  + N   +  ++ S C+ G  ++   + E+M  +G ++N +   G MI +LC+
Sbjct: 370 REMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNG-MIYALCK 428

Query: 152 SGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHT 211
            GR   A  ++  MR +G  P + SYN+I++ LC +     A  + E  ++ G + +  T
Sbjct: 429 DGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGIT 488

Query: 212 YKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFML 271
           Y  ++  L  +   + A ++ + M+           N  ++A+C   N    L +L  M 
Sbjct: 489 YNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMA 548

Query: 272 QTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRI 331
           +   +P+ ++ N +I+  CK  R+ +AL++   M+  +  APD VT+ T+I GL  +G +
Sbjct: 549 EKGIKPNNVSYNILISELCKERRVRDALELSKQML-NQGLAPDIVTYNTLINGLCKMGWM 607

Query: 332 QEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN-CMLGIGVVADSTTYA 390
             ALNLL ++       P I+TYN ++    ++R +++A  + N  M  +  V D     
Sbjct: 608 HAALNLLEKLH-NENVHPDIITYNILISWHCKVRLLDDAAMLLNRAMAAVCPVGDRRIMQ 666

Query: 391 IVID 394
           I+ D
Sbjct: 667 ILPD 670



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 92/342 (26%), Positives = 158/342 (46%), Gaps = 41/342 (11%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M  LC L R+G A +L  +M+ +G  PNVV+YT ++H +C+ G  D    + +EM   G+
Sbjct: 353 MHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGL 412

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             NS  Y+ ++  + +   ++ A  L+ ++       +  + +  ++  ++  LC    +
Sbjct: 413 TLNSQGYNGMIYALCKDGRMDEAMGLIQEM-----RSQGCNPDICSYNTIIYHLCNNEQM 467

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E   + E++ +   V        +I +L R GR   A R+   M   G +  +VSYN +
Sbjct: 468 EEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGL 527

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +  +CK G   R+  LLEE  + G  P+  +Y +L+  LC E    + R  L+  LSK+ 
Sbjct: 528 IKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKE---RRVRDALE--LSKQ- 581

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                        ML     PD++T NT+ING CKMG +  AL 
Sbjct: 582 -----------------------------MLNQGLAPDIVTYNTLINGLCKMGWMHAALN 612

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVM 342
           +L + +  +   PD +T+  +I     V  + +A  LL + M
Sbjct: 613 LL-EKLHNENVHPDIITYNILISWHCKVRLLDDAAMLLNRAM 653



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 81/182 (44%)

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           AL +L+ +       P   ++  ++  L       +AL L  +++ +    P   T+   
Sbjct: 122 ALHLLDQLPRRFGVQPSFRSYNVVLSVLARADCHADALALYRRMVHRDRVPPTTFTFGVA 181

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 417
            R L RL R +EA  +   M   G V D+  Y  VI  LC+   + EA    ++++    
Sbjct: 182 ARALCRLGRADEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGC 241

Query: 418 IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQ 477
             D   +  +++G+C  G++ EA   +  ++  G  P ++ Y  ++ G C++    EA  
Sbjct: 242 AADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARA 301

Query: 478 IL 479
           +L
Sbjct: 302 ML 303


>gi|222612706|gb|EEE50838.1| hypothetical protein OsJ_31258 [Oryza sativa Japonica Group]
          Length = 897

 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 117/424 (27%), Positives = 192/424 (45%), Gaps = 68/424 (16%)

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
           F  G    +LCR GR   A  ++  M + G  P  V Y +++H LC  GG   A  LL E
Sbjct: 160 FTFGVAARALCRLGRADEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNE 219

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
            +  G     +T+  +V G+CG   + +A +++  M++K  +         L+ LC ++ 
Sbjct: 220 MLLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQ 279

Query: 260 PTEL---------LNVLVF----------------------MLQTQCQPDVITLNTVING 288
             E          LNV++F                      M    CQPD  T + +++G
Sbjct: 280 ADEARAMLGRVPELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHG 339

Query: 289 FCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTI--------------------------- 321
            CK+GRI  A+++L +M    F AP+ VT+T +                           
Sbjct: 340 LCKLGRIGSAVRLLREMEKKGF-APNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTL 398

Query: 322 --------IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEV 373
                   I+ L   GR+ EA+ L+ Q M  +G +P I +YN ++  L    ++EEA+ +
Sbjct: 399 NSQGYNGMIYALCKDGRMDEAMGLI-QEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHM 457

Query: 374 FNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR 433
           F  +L  GVVA+  TY  +I  L    +  +A R   +++      D   Y  +IK +C+
Sbjct: 458 FENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCK 517

Query: 434 SGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVT 493
            G +  ++  L E+ + G+ PN V YN++I   CK    R+A ++ ++M   GL PD VT
Sbjct: 518 DGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVT 577

Query: 494 WRIL 497
           +  L
Sbjct: 578 YNTL 581



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 127/476 (26%), Positives = 225/476 (47%), Gaps = 11/476 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC L R  EA  L   M   G VP+ V Y T+IH  C  G +  A  + +EM   G   +
Sbjct: 169 LCRLGRADEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAAD 228

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             T+  +VRG+     V  A     +L +RM  +  +      +  L+  LCR    +E 
Sbjct: 229 VNTFDDVVRGMCGLGRVREAA----RLVDRMMTKGCMP-GVMTYGFLLQGLCRVRQADEA 283

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             +   +P+   V      G  +      G+   A+ +   M  +G  P   +Y+ ++HG
Sbjct: 284 RAMLGRVPELNVVLFNTVIGGCLAE----GKLAEATELYETMGLKGCQPDAHTYSILMHG 339

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LCK G    A +LL E  + G+ P+  TY +++   C     +  R +L+ M +K     
Sbjct: 340 LCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLN 399

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
           ++  N  + ALC      E + ++  M    C PD+ + NT+I   C   ++EEA  +  
Sbjct: 400 SQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFE 459

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           +++     A + +T+ TII  LL  GR Q+A+ L  +++   G S  +V+YN +++ + +
Sbjct: 460 NLLEEGVVA-NGITYNTIIHALLRDGRWQDAVRLAKEMI-LHGCSLDVVSYNGLIKAMCK 517

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
              V+ +  +   M   G+  ++ +Y I+I  LC+  ++ +A      ++      D   
Sbjct: 518 DGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVT 577

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           Y  +I GLC+ G +H A++ L +L +  V P+I+ YN++I   CK+ +  +A  +L
Sbjct: 578 YNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHCKVRLLDDAAMLL 633



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 109/424 (25%), Positives = 203/424 (47%), Gaps = 41/424 (9%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRT--------------------- 42
           +CGL RV EA +L   M ++G +P V++Y  L+ G CR                      
Sbjct: 239 MCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPELNVVLF 298

Query: 43  ----------GEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWE 92
                     G++  A ++++ M   G  P++ TYS+L+ G+ +   +  A  L+     
Sbjct: 299 NTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLL----- 353

Query: 93  RMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDM-PQGKSVNEEFACGHMIDSLCR 151
           R  E++  + N   +  ++ S C+ G  ++   + E+M  +G ++N +   G MI +LC+
Sbjct: 354 REMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNG-MIYALCK 412

Query: 152 SGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHT 211
            GR   A  ++  MR +G  P + SYN+I++ LC +     A  + E  ++ G + +  T
Sbjct: 413 DGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGIT 472

Query: 212 YKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFML 271
           Y  ++  L  +   + A ++ + M+           N  ++A+C   N    L +L  M 
Sbjct: 473 YNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMA 532

Query: 272 QTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRI 331
           +   +P+ ++ N +I+  CK  R+ +AL++   M+  +  APD VT+ T+I GL  +G +
Sbjct: 533 EKGIKPNNVSYNILISELCKERRVRDALELSKQML-NQGLAPDIVTYNTLINGLCKMGWM 591

Query: 332 QEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN-CMLGIGVVADSTTYA 390
             ALNLL ++       P I+TYN ++    ++R +++A  + N  M  +  V D     
Sbjct: 592 HAALNLLEKLH-NENVHPDIITYNILISWHCKVRLLDDAAMLLNRAMAAVCPVGDRRIMQ 650

Query: 391 IVID 394
           I+ D
Sbjct: 651 ILPD 654



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 92/342 (26%), Positives = 158/342 (46%), Gaps = 41/342 (11%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M  LC L R+G A +L  +M+ +G  PNVV+YT ++H +C+ G  D    + +EM   G+
Sbjct: 337 MHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGL 396

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             NS  Y+ ++  + +   ++ A  L+ ++       +  + +  ++  ++  LC    +
Sbjct: 397 TLNSQGYNGMIYALCKDGRMDEAMGLIQEM-----RSQGCNPDICSYNTIIYHLCNNEQM 451

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E   + E++ +   V        +I +L R GR   A R+   M   G +  +VSYN +
Sbjct: 452 EEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGL 511

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +  +CK G   R+  LLEE  + G  P+  +Y +L+  LC E    + R  L+  LSK+ 
Sbjct: 512 IKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKE---RRVRDALE--LSKQ- 565

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                        ML     PD++T NT+ING CKMG +  AL 
Sbjct: 566 -----------------------------MLNQGLAPDIVTYNTLINGLCKMGWMHAALN 596

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVM 342
           +L + +  +   PD +T+  +I     V  + +A  LL + M
Sbjct: 597 LL-EKLHNENVHPDIITYNILISWHCKVRLLDDAAMLLNRAM 637


>gi|449446855|ref|XP_004141186.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g55840-like [Cucumis sativus]
          Length = 1079

 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 128/512 (25%), Positives = 235/512 (45%), Gaps = 47/512 (9%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC  SR  + + +   M+++   PN VSY TLI+G+ + G++ VA +VF+EM    +
Sbjct: 252 IDSLCRNSRSAQGYLVLKKMRNKMITPNEVSYNTLINGFVKEGKIGVATRVFNEMIELNL 311

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +TY++L                                        ++  C  G  
Sbjct: 312 SPNLITYNIL----------------------------------------INGYCINGNF 331

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVV--YVMRKRGLTPSLVSYN 178
            E  R+ + M        E   G +++ L +S +   A  ++  Y + +  L  + +S+ 
Sbjct: 332 EEALRVLDVMEANDVRPNEVTIGTLLNGLYKSAKFDVARNILERYCINRTSL--NCISHT 389

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
            ++ GLC++G    A+QLL E  + G  P   T+ VL+ G C   ++ KA++V+  +  +
Sbjct: 390 VMIDGLCRNGLLDEAFQLLIEMCKDGVHPDIITFSVLINGFCKVGNINKAKEVMSKIYRE 449

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
             V    I +  +   C + N  E +     M       D  T N+++   C+ G++ EA
Sbjct: 450 GFVPNNVIFSTLIYNSCKVGNVYEAMKFYAAMNLNGQNADNFTCNSLVASLCENGKLVEA 509

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
            + L+  ++     P++VTF  II G  NVG    A ++ +  M   G+ P   TY ++L
Sbjct: 510 EEFLHH-ISRIGLVPNSVTFDCIINGYANVGDGSGAFSV-FDRMISCGHHPSPFTYGSLL 567

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
           + L + +   EA+++   +  I +  D+ +Y  +I  + +S  L EA R +++++  + +
Sbjct: 568 KVLCKGQNFWEARKLLKKLHCIPLAVDTISYNTLIVEISKSGNLLEAVRLFEEMIQNNIL 627

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGV-TPNIVCYNVVIDGACKLSMKREAYQ 477
            D+Y Y  ++ GL R G++  A  FL  L+   + T N + Y   IDG  K    + A  
Sbjct: 628 PDSYTYTCILSGLIREGRLVCAFIFLGRLMQKEILTLNSIVYTCFIDGLFKAGQSKAALY 687

Query: 478 ILREMRKNGLNPDAVTWRILDKLHGNRGNDFG 509
           + +EM + GL+ D +    +   +   G  F 
Sbjct: 688 LFKEMEEKGLSLDLIALNSITDGYSRMGKVFS 719



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 107/443 (24%), Positives = 211/443 (47%), Gaps = 6/443 (1%)

Query: 28  NVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLM 87
           N +S+T +I G CR G +D A+++  EM   GV P+ +T+SVL+ G  +  ++ +A  +M
Sbjct: 384 NCISHTVMIDGLCRNGLLDEAFQLLIEMCKDGVHPDIITFSVLINGFCKVGNINKAKEVM 443

Query: 88  FKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMID 147
            K++      E    NN  F+ L+ + C+ G V E  +    M       + F C  ++ 
Sbjct: 444 SKIYR-----EGFVPNNVIFSTLIYNSCKVGNVYEAMKFYAAMNLNGQNADNFTCNSLVA 498

Query: 148 SLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLP 207
           SLC +G+   A   ++ + + GL P+ V+++ I++G    G    A+ + +  I  G+ P
Sbjct: 499 SLCENGKLVEAEEFLHHISRIGLVPNSVTFDCIINGYANVGDGSGAFSVFDRMISCGHHP 558

Query: 208 SEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVL 267
           S  TY  L++ LC   +  +ARK+L+ +        T   N  +  +    N  E + + 
Sbjct: 559 SPFTYGSLLKVLCKGQNFWEARKLLKKLHCIPLAVDTISYNTLIVEISKSGNLLEAVRLF 618

Query: 268 VFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLN 327
             M+Q    PD  T   +++G  + GR+  A   L  ++  +    +++ +T  I GL  
Sbjct: 619 EEMIQNNILPDSYTYTCILSGLIREGRLVCAFIFLGRLMQKEILTLNSIVYTCFIDGLFK 678

Query: 328 VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADST 387
            G+ + AL  L++ M ++G S  ++  N++  G  R+ +V  A  + +      V+ + T
Sbjct: 679 AGQSKAAL-YLFKEMEEKGLSLDLIALNSITDGYSRMGKVFSASSLISKTRNKNVIPNLT 737

Query: 388 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYEL 447
           T+ I++ G      +    + ++ +       +   Y ++I GLC  G +   +  L   
Sbjct: 738 TFNILLHGYSRGQDIMSCFKLYNLMRRSGFFPNRLTYHSLILGLCNHGMLELGIKMLKMF 797

Query: 448 VDSGVTPNIVCYNVVIDGACKLS 470
           +    T + + +N++I   C+++
Sbjct: 798 IAESSTIDDLTFNMLIRKCCEIN 820



 Score =  161 bits (408), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 132/522 (25%), Positives = 234/522 (44%), Gaps = 46/522 (8%)

Query: 10  VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSV 69
           VG A   F  M  RG  P+V +   ++    +     + +  F +M    V PN  ++++
Sbjct: 121 VGHAVNTFSSMLIRGFKPSVYTCNMIMASMVKNCRAHLVWSFFKQMLTSRVCPNVSSFNI 180

Query: 70  LVRGVLRTRDVERA-NVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
           L+  +     +++A N+L       M E         ++  L+   C++G       +  
Sbjct: 181 LISVLCVQGKLKKAVNIL------TMMERNGYVPTIVSYNTLLSWCCKKGRFKFALVLIH 234

Query: 129 DMPQGKSVNEEFACGHM-IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKH 187
            M + K +  +    +M IDSLCR+ R+     V+  MR + +TP+ VSYN++++G  K 
Sbjct: 235 HM-ECKGIQADVCTYNMFIDSLCRNSRSAQGYLVLKKMRNKMITPNEVSYNTLINGFVKE 293

Query: 188 GGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM------------ 235
           G    A ++  E I+    P+  TY +L+ G C   + E+A +VL  M            
Sbjct: 294 GKIGVATRVFNEMIELNLSPNLITYNILINGYCINGNFEEALRVLDVMEANDVRPNEVTI 353

Query: 236 ---------LSKKDVDRT---RIC-----------NIYLRALCLIKNPTELLNVLVFMLQ 272
                     +K DV R    R C            + +  LC      E   +L+ M +
Sbjct: 354 GTLLNGLYKSAKFDVARNILERYCINRTSLNCISHTVMIDGLCRNGLLDEAFQLLIEMCK 413

Query: 273 TQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQ 332
               PD+IT + +INGFCK+G I +A +V++ +    F  P+ V F+T+I+    VG + 
Sbjct: 414 DGVHPDIITFSVLINGFCKVGNINKAKEVMSKIYREGF-VPNNVIFSTLIYNSCKVGNVY 472

Query: 333 EALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIV 392
           EA+   Y  M   G +    T N+++  L    ++ EA+E  + +  IG+V +S T+  +
Sbjct: 473 EAMK-FYAAMNLNGQNADNFTCNSLVASLCENGKLVEAEEFLHHISRIGLVPNSVTFDCI 531

Query: 393 IDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGV 452
           I+G         A   +D ++   +    + Y +++K LC+     EA   L +L    +
Sbjct: 532 INGYANVGDGSGAFSVFDRMISCGHHPSPFTYGSLLKVLCKGQNFWEARKLLKKLHCIPL 591

Query: 453 TPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
             + + YN +I    K     EA ++  EM +N + PD+ T+
Sbjct: 592 AVDTISYNTLIVEISKSGNLLEAVRLFEEMIQNNILPDSYTY 633



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 112/475 (23%), Positives = 218/475 (45%), Gaps = 11/475 (2%)

Query: 28  NVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLM 87
           N   +  LI  Y R G +  A   F  M   G  P+  T ++++  +++     RA+++ 
Sbjct: 104 NPAVFDLLIRVYLRQGMVGHAVNTFSSMLIRGFKPSVYTCNMIMASMVKNC---RAHLV- 159

Query: 88  FKLWERMKE--EEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHM 145
              W   K+     +  N ++F  L+  LC +G + +   I   M +   V    +   +
Sbjct: 160 ---WSFFKQMLTSRVCPNVSSFNILISVLCVQGKLKKAVNILTMMERNGYVPTIVSYNTL 216

Query: 146 IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY 205
           +   C+ GR   A  +++ M  +G+   + +YN  +  LC++    + Y +L++      
Sbjct: 217 LSWCCKKGRFKFALVLIHHMECKGIQADVCTYNMFIDSLCRNSRSAQGYLVLKKMRNKMI 276

Query: 206 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 265
            P+E +Y  L+ G   E  +  A +V   M+           NI +   C+  N  E L 
Sbjct: 277 TPNEVSYNTLINGFVKEGKIGVATRVFNEMIELNLSPNLITYNILINGYCINGNFEEALR 336

Query: 266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 325
           VL  M     +P+ +T+ T++NG  K  + + A  +L      +  + + ++ T +I GL
Sbjct: 337 VLDVMEANDVRPNEVTIGTLLNGLYKSAKFDVARNILERYCINR-TSLNCISHTVMIDGL 395

Query: 326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 385
              G + EA  LL + M + G  P I+T++ ++ G  ++  + +AKEV + +   G V +
Sbjct: 396 CRNGLLDEAFQLLIE-MCKDGVHPDIITFSVLINGFCKVGNINKAKEVMSKIYREGFVPN 454

Query: 386 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY 445
           +  ++ +I   C+   + EA +F+  +       DN+   +++  LC +GK+ EA  FL+
Sbjct: 455 NVIFSTLIYNSCKVGNVYEAMKFYAAMNLNGQNADNFTCNSLVASLCENGKLVEAEEFLH 514

Query: 446 ELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKL 500
            +   G+ PN V ++ +I+G   +     A+ +   M   G +P   T+  L K+
Sbjct: 515 HISRIGLVPNSVTFDCIINGYANVGDGSGAFSVFDRMISCGHHPSPFTYGSLLKV 569



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 111/484 (22%), Positives = 213/484 (44%), Gaps = 6/484 (1%)

Query: 4    LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            LC      EA KL   +       + +SY TLI    ++G +  A ++F+EM    +LP+
Sbjct: 570  LCKGQNFWEARKLLKKLHCIPLAVDTISYNTLIVEISKSGNLLEAVRLFEEMIQNNILPD 629

Query: 64   SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            S TY+ ++ G++R    E   V  F    R+ ++E L++N+  +   +D L + G     
Sbjct: 630  SYTYTCILSGLIR----EGRLVCAFIFLGRLMQKEILTLNSIVYTCFIDGLFKAGQSKAA 685

Query: 124  FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
              + ++M +     +  A   + D   R G+   AS ++   R + + P+L ++N ++HG
Sbjct: 686  LYLFKEMEEKGLSLDLIALNSITDGYSRMGKVFSASSLISKTRNKNVIPNLTTFNILLHG 745

Query: 184  LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
              +    M  ++L     + G+ P+  TY  L+ GLC    LE   K+L+  +++     
Sbjct: 746  YSRGQDIMSCFKLYNLMRRSGFFPNRLTYHSLILGLCNHGMLELGIKMLKMFIAESSTID 805

Query: 244  TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                N+ +R  C I +  +++++   M   +   D  T   V +   +    +     ++
Sbjct: 806  DLTFNMLIRKCCEINDLDKVIDLTHNMEVFRVSLDKDTQKAVTDVLVRRMVSQNYFVFMH 865

Query: 304  DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            +M+   F  P +  + T++  +  VG IQ A  L  Q M   G S       A++RGL  
Sbjct: 866  EMLKKGF-IPTSKQYCTMMKRMCRVGDIQGAFKLKDQ-MVALGISLDDAAECAMVRGLAL 923

Query: 364  LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
              ++EEA  +   ML +  +  ++T+  ++   C+ +   EA      +       D   
Sbjct: 924  CGKIEEAMWILQRMLRMKKIPTTSTFTTLMHVFCKKDNFKEAHNLKILMEHYRVKLDIVA 983

Query: 424  YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
            Y  +I   C +G +  A+ F  E+   G+ PN+  Y V++              +L+++ 
Sbjct: 984  YNVLISACCANGDVITALDFYEEIKQKGLLPNMTTYRVLVSAISTKHYVSRGEIVLKDLN 1043

Query: 484  KNGL 487
              GL
Sbjct: 1044 DRGL 1047



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 44/93 (47%)

Query: 1    MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
            M   C      EAH L   M+      ++V+Y  LI   C  G++  A   ++E++  G+
Sbjct: 953  MHVFCKKDNFKEAHNLKILMEHYRVKLDIVAYNVLISACCANGDVITALDFYEEIKQKGL 1012

Query: 61   LPNSLTYSVLVRGVLRTRDVERANVLMFKLWER 93
            LPN  TY VLV  +     V R  +++  L +R
Sbjct: 1013 LPNMTTYRVLVSAISTKHYVSRGEIVLKDLNDR 1045


>gi|223635763|sp|Q9LER0.2|PP381_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g14770, mitochondrial; Flags: Precursor
          Length = 940

 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 113/363 (31%), Positives = 179/363 (49%), Gaps = 19/363 (5%)

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
           FA   +I S C+ GR    S  + ++R R ++   V+YN+++ GLC+HG    AYQ L E
Sbjct: 132 FALNVLIHSFCKVGR---LSFAISLLRNRVISIDTVTYNTVISGLCEHGLADEAYQFLSE 188

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIK- 258
            ++ G LP   +Y  L++G C         KV  F+ +K  VD     N+    + L   
Sbjct: 189 MVKMGILPDTVSYNTLIDGFC---------KVGNFVRAKALVDEISELNLITHTILLSSY 239

Query: 259 -NPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVT 317
            N   +      M+ +   PDV+T +++IN  CK G++ E   +L +M       P+ VT
Sbjct: 240 YNLHAIEEAYRDMVMSGFDPDVVTFSSIINRLCKGGKVLEGGLLLREMEEMS-VYPNHVT 298

Query: 318 FTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCM 377
           +TT++  L      + AL L Y  M  RG    +V Y  ++ GLF+   + EA++ F  +
Sbjct: 299 YTTLVDSLFKANIYRHALAL-YSQMVVRGIPVDLVVYTVLMDGLFKAGDLREAEKTFKML 357

Query: 378 LGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKI 437
           L    V +  TY  ++DGLC++  L  A+     ++  S I +   Y++MI G  + G +
Sbjct: 358 LEDNQVPNVVTYTALVDGLCKAGDLSSAEFIITQMLEKSVIPNVVTYSSMINGYVKKGML 417

Query: 438 HEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            EAV  L ++ D  V PN   Y  VIDG  K   +  A ++ +EMR  G+  +     IL
Sbjct: 418 EEAVSLLRKMEDQNVVPNGFTYGTVIDGLFKAGKEEMAIELSKEMRLIGVEENNY---IL 474

Query: 498 DKL 500
           D L
Sbjct: 475 DAL 477



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 125/499 (25%), Positives = 231/499 (46%), Gaps = 18/499 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    +  A  +   M  +  +PNVV+Y+++I+GY + G ++ A  +  +M    V
Sbjct: 373 VDGLCKAGDLSSAEFIITQMLEKSVIPNVVTYSSMINGYVKKGMLEEAVSLLRKMEDQNV 432

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSV--NNAAFANLVDSLCREG 118
           +PN  TY  ++ G+ +    E A        E  KE   + V  NN     LV+ L R G
Sbjct: 433 VPNGFTYGTVIDGLFKAGKEEMA-------IELSKEMRLIGVEENNYILDALVNHLKRIG 485

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
            + EV  + +DM       ++     +ID   + G    A      M++RG+   +VSYN
Sbjct: 486 RIKEVKGLVKDMVSKGVTLDQINYTSLIDVFFKGGDEEAALAWAEEMQERGMPWDVVSYN 545

Query: 179 SIVHGLCKHG--GCMRAYQ-LLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM 235
            ++ G+ K G  G   AY+ + E+GI+    P   T+ +++     + D E   K+   M
Sbjct: 546 VLISGMLKFGKVGADWAYKGMREKGIE----PDIATFNIMMNSQRKQGDSEGILKLWDKM 601

Query: 236 LSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 295
            S         CNI +  LC      E +++L  M+  +  P++ T    ++   K  R 
Sbjct: 602 KSCGIKPSLMSCNIVVGMLCENGKMEEAIHILNQMMLMEIHPNLTTYRIFLDTSSKHKRA 661

Query: 296 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN 355
           +   K    +++        V + T+I  L  +G  ++A  ++   M  RG+ P  VT+N
Sbjct: 662 DAIFKTHETLLSYGIKLSRQV-YNTLIATLCKLGMTKKAAMVMGD-MEARGFIPDTVTFN 719

Query: 356 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP 415
           +++ G F    V +A   ++ M+  G+  +  TY  +I GL ++  + E  ++  ++   
Sbjct: 720 SLMHGYFVGSHVRKALSTYSVMMEAGISPNVATYNTIIRGLSDAGLIKEVDKWLSEMKSR 779

Query: 416 SNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREA 475
               D++ Y A+I G  + G +  ++    E++  G+ P    YNV+I     +    +A
Sbjct: 780 GMRPDDFTYNALISGQAKIGNMKGSMTIYCEMIADGLVPKTSTYNVLISEFANVGKMLQA 839

Query: 476 YQILREMRKNGLNPDAVTW 494
            ++L+EM K G++P+  T+
Sbjct: 840 RELLKEMGKRGVSPNTSTY 858



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 117/496 (23%), Positives = 223/496 (44%), Gaps = 20/496 (4%)

Query: 3   QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
             C + R+  A  L   +++R    + V+Y T+I G C  G  D AY+   EM   G+LP
Sbjct: 140 SFCKVGRLSFAISL---LRNRVISIDTVTYNTVISGLCEHGLADEAYQFLSEMVKMGILP 196

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           ++++Y+ L+ G  +  +  RA  L+ ++ E         +N      L+ S      + E
Sbjct: 197 DTVSYNTLIDGFCKVGNFVRAKALVDEISE---------LNLITHTILLSSYYNLHAIEE 247

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
            +R   DM       +      +I+ LC+ G+      ++  M +  + P+ V+Y ++V 
Sbjct: 248 AYR---DMVMSGFDPDVVTFSSIINRLCKGGKVLEGGLLLREMEEMSVYPNHVTYTTLVD 304

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
            L K      A  L  + +  G       Y VL++GL    DL +A K  + +L    V 
Sbjct: 305 SLFKANIYRHALALYSQMVVRGIPVDLVVYTVLMDGLFKAGDLREAEKTFKMLLEDNQVP 364

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
                   +  LC   + +    ++  ML+    P+V+T +++ING+ K G +EEA+ +L
Sbjct: 365 NVVTYTALVDGLCKAGDLSSAEFIITQMLEKSVIPNVVTYSSMINGYVKKGMLEEAVSLL 424

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
             M   +   P+  T+ T+I GL   G+ + A+ L  + M   G        +A++  L 
Sbjct: 425 RKM-EDQNVVPNGFTYGTVIDGLFKAGKEEMAIELSKE-MRLIGVEENNYILDALVNHLK 482

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
           R+ R++E K +   M+  GV  D   Y  +ID   +    + A  + +++       D  
Sbjct: 483 RIGRIKEVKGLVKDMVSKGVTLDQINYTSLIDVFFKGGDEEAALAWAEEMQERGMPWDVV 542

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYE-LVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
            Y  +I G+ + GK+     + Y+ + + G+ P+I  +N++++   K        ++  +
Sbjct: 543 SYNVLISGMLKFGKV--GADWAYKGMREKGIEPDIATFNIMMNSQRKQGDSEGILKLWDK 600

Query: 482 MRKNGLNPDAVTWRIL 497
           M+  G+ P  ++  I+
Sbjct: 601 MKSCGIKPSLMSCNIV 616



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 118/497 (23%), Positives = 228/497 (45%), Gaps = 15/497 (3%)

Query: 7   LSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLT 66
           L  + EA++   DM   G  P+VV+++++I+  C+ G++     +  EM    V PN +T
Sbjct: 242 LHAIEEAYR---DMVMSGFDPDVVTFSSIINRLCKGGKVLEGGLLLREMEEMSVYPNHVT 298

Query: 67  YSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRI 126
           Y+ LV  + +      A  L  ++  R      + V+   +  L+D L + G + E  + 
Sbjct: 299 YTTLVDSLFKANIYRHALALYSQMVVR-----GIPVDLVVYTVLMDGLFKAGDLREAEKT 353

Query: 127 AEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK 186
            + + +   V        ++D LC++G    A  ++  M ++ + P++V+Y+S+++G  K
Sbjct: 354 FKMLLEDNQVPNVVTYTALVDGLCKAGDLSSAEFIITQMLEKSVIPNVVTYSSMINGYVK 413

Query: 187 HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRI 246
            G    A  LL +      +P+  TY  +++GL      E A ++ + M      +   I
Sbjct: 414 KGMLEEAVSLLRKMEDQNVVPNGFTYGTVIDGLFKAGKEEMAIELSKEMRLIGVEENNYI 473

Query: 247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV 306
            +  +  L  I    E+  ++  M+      D I   ++I+ F K G  E AL    +M 
Sbjct: 474 LDALVNHLKRIGRIKEVKGLVKDMVSKGVTLDQINYTSLIDVFFKGGDEEAALAWAEEM- 532

Query: 307 AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 366
             +    D V++  +I G+L  G++    +  Y+ M ++G  P I T+N ++    +   
Sbjct: 533 QERGMPWDVVSYNVLISGMLKFGKV--GADWAYKGMREKGIEPDIATFNIMMNSQRKQGD 590

Query: 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAA 426
            E   ++++ M   G+     +  IV+  LCE+ +++EA    + ++    IH N     
Sbjct: 591 SEGILKLWDKMKSCGIKPSLMSCNIVVGMLCENGKMEEAIHILNQMML-MEIHPNLTTYR 649

Query: 427 MIKGLCRSGKIHEAVHFLYE-LVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN 485
           +        K  +A+   +E L+  G+  +   YN +I   CKL M ++A  ++ +M   
Sbjct: 650 IFLDTSSKHKRADAIFKTHETLLSYGIKLSRQVYNTLIATLCKLGMTKKAAMVMGDMEAR 709

Query: 486 GLNPDAVTWRILDKLHG 502
           G  PD VT+  L  +HG
Sbjct: 710 GFIPDTVTFNSL--MHG 724



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 116/542 (21%), Positives = 230/542 (42%), Gaps = 45/542 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +++LC   +V E   L  +M+     PN V+YTTL+    +      A  ++ +M   G+
Sbjct: 268 INRLCKGGKVLEGGLLLREMEEMSVYPNHVTYTTLVDSLFKANIYRHALALYSQMVVRGI 327

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             + + Y+VL+ G+ +  D+  A         +M  E++   N   +  LVD LC+ G +
Sbjct: 328 PVDLVVYTVLMDGLFKAGDLREAEKTF-----KMLLEDNQVPNVVTYTALVDGLCKAGDL 382

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +    I   M +   +        MI+   + G    A  ++  M  + + P+  +Y ++
Sbjct: 383 SSAEFIITQMLEKSVIPNVVTYSSMINGYVKKGMLEEAVSLLRKMEDQNVVPNGFTYGTV 442

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK-- 238
           + GL K G    A +L +E    G   + +    LV  L     +++ + +++ M+SK  
Sbjct: 443 IDGLFKAGKEEMAIELSKEMRLIGVEENNYILDALVNHLKRIGRIKEVKGLVKDMVSKGV 502

Query: 239 --KDVDRTRICNIYLRALCLIKN------------PTELL--NVLVF------------- 269
               ++ T + +++ +                   P +++  NVL+              
Sbjct: 503 TLDQINYTSLIDVFFKGGDEEAALAWAEEMQERGMPWDVVSYNVLISGMLKFGKVGADWA 562

Query: 270 ---MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCA--PDAVTFTTIIFG 324
              M +   +PD+ T N ++N   K G  E  LK+ + M   K C   P  ++   ++  
Sbjct: 563 YKGMREKGIEPDIATFNIMMNSQRKQGDSEGILKLWDKM---KSCGIKPSLMSCNIVVGM 619

Query: 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 384
           L   G+++EA+++L Q+M    + P + TY   L    + +R +   +    +L  G+  
Sbjct: 620 LCENGKMEEAIHILNQMMLMEIH-PNLTTYRIFLDTSSKHKRADAIFKTHETLLSYGIKL 678

Query: 385 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFL 444
               Y  +I  LC+     +A     D+     I D   + +++ G      + +A+   
Sbjct: 679 SRQVYNTLIATLCKLGMTKKAAMVMGDMEARGFIPDTVTFNSLMHGYFVGSHVRKALSTY 738

Query: 445 YELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNR 504
             ++++G++PN+  YN +I G     + +E  + L EM+  G+ PD  T+  L       
Sbjct: 739 SVMMEAGISPNVATYNTIIRGLSDAGLIKEVDKWLSEMKSRGMRPDDFTYNALISGQAKI 798

Query: 505 GN 506
           GN
Sbjct: 799 GN 800



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 113/228 (49%), Gaps = 12/228 (5%)

Query: 270 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG 329
           M+     PDV  LN +I+ FCK+GR+  A+ +L + V     + D VT+ T+I GL   G
Sbjct: 122 MIACGVSPDVFALNVLIHSFCKVGRLSFAISLLRNRV----ISIDTVTYNTVISGLCEHG 177

Query: 330 RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTY 389
              EA   L + M + G  P  V+YN ++ G  ++     AK + + +  + ++    T+
Sbjct: 178 LADEAYQFLSE-MVKMGILPDTVSYNTLIDGFCKVGNFVRAKALVDEISELNLI----TH 232

Query: 390 AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449
            I++      + ++EA R   D+V      D   ++++I  LC+ GK+ E    L E+ +
Sbjct: 233 TILLSSYYNLHAIEEAYR---DMVMSGFDPDVVTFSSIINRLCKGGKVLEGGLLLREMEE 289

Query: 450 SGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
             V PN V Y  ++D   K ++ R A  +  +M   G+  D V + +L
Sbjct: 290 MSVYPNHVTYTTLVDSLFKANIYRHALALYSQMVVRGIPVDLVVYTVL 337


>gi|15241491|ref|NP_196981.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|9755745|emb|CAC01876.1| putative protein [Arabidopsis thaliana]
 gi|332004692|gb|AED92075.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 938

 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 113/363 (31%), Positives = 179/363 (49%), Gaps = 19/363 (5%)

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
           FA   +I S C+ GR    S  + ++R R ++   V+YN+++ GLC+HG    AYQ L E
Sbjct: 130 FALNVLIHSFCKVGR---LSFAISLLRNRVISIDTVTYNTVISGLCEHGLADEAYQFLSE 186

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIK- 258
            ++ G LP   +Y  L++G C         KV  F+ +K  VD     N+    + L   
Sbjct: 187 MVKMGILPDTVSYNTLIDGFC---------KVGNFVRAKALVDEISELNLITHTILLSSY 237

Query: 259 -NPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVT 317
            N   +      M+ +   PDV+T +++IN  CK G++ E   +L +M       P+ VT
Sbjct: 238 YNLHAIEEAYRDMVMSGFDPDVVTFSSIINRLCKGGKVLEGGLLLREMEEMS-VYPNHVT 296

Query: 318 FTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCM 377
           +TT++  L      + AL L Y  M  RG    +V Y  ++ GLF+   + EA++ F  +
Sbjct: 297 YTTLVDSLFKANIYRHALAL-YSQMVVRGIPVDLVVYTVLMDGLFKAGDLREAEKTFKML 355

Query: 378 LGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKI 437
           L    V +  TY  ++DGLC++  L  A+     ++  S I +   Y++MI G  + G +
Sbjct: 356 LEDNQVPNVVTYTALVDGLCKAGDLSSAEFIITQMLEKSVIPNVVTYSSMINGYVKKGML 415

Query: 438 HEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            EAV  L ++ D  V PN   Y  VIDG  K   +  A ++ +EMR  G+  +     IL
Sbjct: 416 EEAVSLLRKMEDQNVVPNGFTYGTVIDGLFKAGKEEMAIELSKEMRLIGVEENNY---IL 472

Query: 498 DKL 500
           D L
Sbjct: 473 DAL 475



 Score =  167 bits (424), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 124/497 (24%), Positives = 232/497 (46%), Gaps = 14/497 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    +  A  +   M  +  +PNVV+Y+++I+GY + G ++ A  +  +M    V
Sbjct: 371 VDGLCKAGDLSSAEFIITQMLEKSVIPNVVTYSSMINGYVKKGMLEEAVSLLRKMEDQNV 430

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +PN  TY  ++ G+ +    E A + + K    +  EE    NN     LV+ L R G +
Sbjct: 431 VPNGFTYGTVIDGLFKAGKEEMA-IELSKEMRLIGVEE----NNYILDALVNHLKRIGRI 485

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            EV  + +DM       ++     +ID   + G    A      M++RG+   +VSYN +
Sbjct: 486 KEVKGLVKDMVSKGVTLDQINYTSLIDVFFKGGDEEAALAWAEEMQERGMPWDVVSYNVL 545

Query: 181 VHGLCKHG--GCMRAYQ-LLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
           + G+ K G  G   AY+ + E+GI+    P   T+ +++     + D E   K+   M S
Sbjct: 546 ISGMLKFGKVGADWAYKGMREKGIE----PDIATFNIMMNSQRKQGDSEGILKLWDKMKS 601

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
                    CNI +  LC      E +++L  M+  +  P++ T    ++   K  R + 
Sbjct: 602 CGIKPSLMSCNIVVGMLCENGKMEEAIHILNQMMLMEIHPNLTTYRIFLDTSSKHKRADA 661

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
             K    +++        V + T+I  L  +G  ++A  ++   M  RG+ P  VT+N++
Sbjct: 662 IFKTHETLLSYGIKLSRQV-YNTLIATLCKLGMTKKAAMVMGD-MEARGFIPDTVTFNSL 719

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 417
           + G F    V +A   ++ M+  G+  +  TY  +I GL ++  + E  ++  ++     
Sbjct: 720 MHGYFVGSHVRKALSTYSVMMEAGISPNVATYNTIIRGLSDAGLIKEVDKWLSEMKSRGM 779

Query: 418 IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQ 477
             D++ Y A+I G  + G +  ++    E++  G+ P    YNV+I     +    +A +
Sbjct: 780 RPDDFTYNALISGQAKIGNMKGSMTIYCEMIADGLVPKTSTYNVLISEFANVGKMLQARE 839

Query: 478 ILREMRKNGLNPDAVTW 494
           +L+EM K G++P+  T+
Sbjct: 840 LLKEMGKRGVSPNTSTY 856



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 117/496 (23%), Positives = 223/496 (44%), Gaps = 20/496 (4%)

Query: 3   QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
             C + R+  A  L   +++R    + V+Y T+I G C  G  D AY+   EM   G+LP
Sbjct: 138 SFCKVGRLSFAISL---LRNRVISIDTVTYNTVISGLCEHGLADEAYQFLSEMVKMGILP 194

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           ++++Y+ L+ G  +  +  RA  L+ ++ E         +N      L+ S      + E
Sbjct: 195 DTVSYNTLIDGFCKVGNFVRAKALVDEISE---------LNLITHTILLSSYYNLHAIEE 245

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
            +R   DM       +      +I+ LC+ G+      ++  M +  + P+ V+Y ++V 
Sbjct: 246 AYR---DMVMSGFDPDVVTFSSIINRLCKGGKVLEGGLLLREMEEMSVYPNHVTYTTLVD 302

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
            L K      A  L  + +  G       Y VL++GL    DL +A K  + +L    V 
Sbjct: 303 SLFKANIYRHALALYSQMVVRGIPVDLVVYTVLMDGLFKAGDLREAEKTFKMLLEDNQVP 362

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
                   +  LC   + +    ++  ML+    P+V+T +++ING+ K G +EEA+ +L
Sbjct: 363 NVVTYTALVDGLCKAGDLSSAEFIITQMLEKSVIPNVVTYSSMINGYVKKGMLEEAVSLL 422

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
             M   +   P+  T+ T+I GL   G+ + A+ L  + M   G        +A++  L 
Sbjct: 423 RKM-EDQNVVPNGFTYGTVIDGLFKAGKEEMAIELSKE-MRLIGVEENNYILDALVNHLK 480

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
           R+ R++E K +   M+  GV  D   Y  +ID   +    + A  + +++       D  
Sbjct: 481 RIGRIKEVKGLVKDMVSKGVTLDQINYTSLIDVFFKGGDEEAALAWAEEMQERGMPWDVV 540

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYE-LVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
            Y  +I G+ + GK+     + Y+ + + G+ P+I  +N++++   K        ++  +
Sbjct: 541 SYNVLISGMLKFGKV--GADWAYKGMREKGIEPDIATFNIMMNSQRKQGDSEGILKLWDK 598

Query: 482 MRKNGLNPDAVTWRIL 497
           M+  G+ P  ++  I+
Sbjct: 599 MKSCGIKPSLMSCNIV 614



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 118/497 (23%), Positives = 228/497 (45%), Gaps = 15/497 (3%)

Query: 7   LSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLT 66
           L  + EA++   DM   G  P+VV+++++I+  C+ G++     +  EM    V PN +T
Sbjct: 240 LHAIEEAYR---DMVMSGFDPDVVTFSSIINRLCKGGKVLEGGLLLREMEEMSVYPNHVT 296

Query: 67  YSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRI 126
           Y+ LV  + +      A  L  ++  R      + V+   +  L+D L + G + E  + 
Sbjct: 297 YTTLVDSLFKANIYRHALALYSQMVVR-----GIPVDLVVYTVLMDGLFKAGDLREAEKT 351

Query: 127 AEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK 186
            + + +   V        ++D LC++G    A  ++  M ++ + P++V+Y+S+++G  K
Sbjct: 352 FKMLLEDNQVPNVVTYTALVDGLCKAGDLSSAEFIITQMLEKSVIPNVVTYSSMINGYVK 411

Query: 187 HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRI 246
            G    A  LL +      +P+  TY  +++GL      E A ++ + M      +   I
Sbjct: 412 KGMLEEAVSLLRKMEDQNVVPNGFTYGTVIDGLFKAGKEEMAIELSKEMRLIGVEENNYI 471

Query: 247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV 306
            +  +  L  I    E+  ++  M+      D I   ++I+ F K G  E AL    +M 
Sbjct: 472 LDALVNHLKRIGRIKEVKGLVKDMVSKGVTLDQINYTSLIDVFFKGGDEEAALAWAEEM- 530

Query: 307 AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 366
             +    D V++  +I G+L  G++    +  Y+ M ++G  P I T+N ++    +   
Sbjct: 531 QERGMPWDVVSYNVLISGMLKFGKV--GADWAYKGMREKGIEPDIATFNIMMNSQRKQGD 588

Query: 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAA 426
            E   ++++ M   G+     +  IV+  LCE+ +++EA    + ++    IH N     
Sbjct: 589 SEGILKLWDKMKSCGIKPSLMSCNIVVGMLCENGKMEEAIHILNQMML-MEIHPNLTTYR 647

Query: 427 MIKGLCRSGKIHEAVHFLYE-LVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN 485
           +        K  +A+   +E L+  G+  +   YN +I   CKL M ++A  ++ +M   
Sbjct: 648 IFLDTSSKHKRADAIFKTHETLLSYGIKLSRQVYNTLIATLCKLGMTKKAAMVMGDMEAR 707

Query: 486 GLNPDAVTWRILDKLHG 502
           G  PD VT+  L  +HG
Sbjct: 708 GFIPDTVTFNSL--MHG 722



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 116/542 (21%), Positives = 230/542 (42%), Gaps = 45/542 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +++LC   +V E   L  +M+     PN V+YTTL+    +      A  ++ +M   G+
Sbjct: 266 INRLCKGGKVLEGGLLLREMEEMSVYPNHVTYTTLVDSLFKANIYRHALALYSQMVVRGI 325

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             + + Y+VL+ G+ +  D+  A         +M  E++   N   +  LVD LC+ G +
Sbjct: 326 PVDLVVYTVLMDGLFKAGDLREAEKTF-----KMLLEDNQVPNVVTYTALVDGLCKAGDL 380

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +    I   M +   +        MI+   + G    A  ++  M  + + P+  +Y ++
Sbjct: 381 SSAEFIITQMLEKSVIPNVVTYSSMINGYVKKGMLEEAVSLLRKMEDQNVVPNGFTYGTV 440

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK-- 238
           + GL K G    A +L +E    G   + +    LV  L     +++ + +++ M+SK  
Sbjct: 441 IDGLFKAGKEEMAIELSKEMRLIGVEENNYILDALVNHLKRIGRIKEVKGLVKDMVSKGV 500

Query: 239 --KDVDRTRICNIYLRALCLIKN------------PTELL--NVLVF------------- 269
               ++ T + +++ +                   P +++  NVL+              
Sbjct: 501 TLDQINYTSLIDVFFKGGDEEAALAWAEEMQERGMPWDVVSYNVLISGMLKFGKVGADWA 560

Query: 270 ---MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCA--PDAVTFTTIIFG 324
              M +   +PD+ T N ++N   K G  E  LK+ + M   K C   P  ++   ++  
Sbjct: 561 YKGMREKGIEPDIATFNIMMNSQRKQGDSEGILKLWDKM---KSCGIKPSLMSCNIVVGM 617

Query: 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 384
           L   G+++EA+++L Q+M    + P + TY   L    + +R +   +    +L  G+  
Sbjct: 618 LCENGKMEEAIHILNQMMLMEIH-PNLTTYRIFLDTSSKHKRADAIFKTHETLLSYGIKL 676

Query: 385 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFL 444
               Y  +I  LC+     +A     D+     I D   + +++ G      + +A+   
Sbjct: 677 SRQVYNTLIATLCKLGMTKKAAMVMGDMEARGFIPDTVTFNSLMHGYFVGSHVRKALSTY 736

Query: 445 YELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNR 504
             ++++G++PN+  YN +I G     + +E  + L EM+  G+ PD  T+  L       
Sbjct: 737 SVMMEAGISPNVATYNTIIRGLSDAGLIKEVDKWLSEMKSRGMRPDDFTYNALISGQAKI 796

Query: 505 GN 506
           GN
Sbjct: 797 GN 798



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 113/228 (49%), Gaps = 12/228 (5%)

Query: 270 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG 329
           M+     PDV  LN +I+ FCK+GR+  A+ +L + V     + D VT+ T+I GL   G
Sbjct: 120 MIACGVSPDVFALNVLIHSFCKVGRLSFAISLLRNRV----ISIDTVTYNTVISGLCEHG 175

Query: 330 RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTY 389
              EA   L + M + G  P  V+YN ++ G  ++     AK + + +  + ++    T+
Sbjct: 176 LADEAYQFLSE-MVKMGILPDTVSYNTLIDGFCKVGNFVRAKALVDEISELNLI----TH 230

Query: 390 AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449
            I++      + ++EA R   D+V      D   ++++I  LC+ GK+ E    L E+ +
Sbjct: 231 TILLSSYYNLHAIEEAYR---DMVMSGFDPDVVTFSSIINRLCKGGKVLEGGLLLREMEE 287

Query: 450 SGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
             V PN V Y  ++D   K ++ R A  +  +M   G+  D V + +L
Sbjct: 288 MSVYPNHVTYTTLVDSLFKANIYRHALALYSQMVVRGIPVDLVVYTVL 335


>gi|15223266|ref|NP_172337.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75262899|sp|Q9FRS4.1|PPR22_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08610
 gi|9802579|gb|AAF99781.1|AC003981_31 F22O13.9 [Arabidopsis thaliana]
 gi|332190196|gb|AEE28317.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 559

 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 118/441 (26%), Positives = 210/441 (47%), Gaps = 7/441 (1%)

Query: 35  LIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERM 94
           ++H  C  G++  A K+ + M     +P+  + S LVRG+ R   +++A  ++     R+
Sbjct: 110 ILHNLCSNGKLTDACKLVEVMARHNQVPHFPSCSNLVRGLARIDQLDKAMCIL-----RV 164

Query: 95  KEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGR 154
                   +   +  ++ +LC++G++     + EDM    S  +      +I  +   G 
Sbjct: 165 MVMSGGVPDTITYNMIIGNLCKKGHIRTALVLLEDMSLSGSPPDVITYNTVIRCMFDYGN 224

Query: 155 NHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKV 214
              A R      + G  P +++Y  +V  +C++ G  RA ++LE+    G  P   TY  
Sbjct: 225 AEQAIRFWKDQLQNGCPPFMITYTVLVELVCRYCGSARAIEVLEDMAVEGCYPDIVTYNS 284

Query: 215 LVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQ 274
           LV   C   +LE+   V+Q +LS      T   N  L +LC  +   E+  +L  M QT 
Sbjct: 285 LVNYNCRRGNLEEVASVIQHILSHGLELNTVTYNTLLHSLCSHEYWDEVEEILNIMYQTS 344

Query: 275 CQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEA 334
             P VIT N +ING CK   +  A+     M+  K C PD VT+ T++  +   G + +A
Sbjct: 345 YCPTVITYNILINGLCKARLLSRAIDFFYQMLEQK-CLPDIVTYNTVLGAMSKEGMVDDA 403

Query: 335 LNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVID 394
           + LL  ++      PG++TYN+V+ GL +   +++A E+++ ML  G+  D  T   +I 
Sbjct: 404 IELL-GLLKNTCCPPGLITYNSVIDGLAKKGLMKKALELYHQMLDAGIFPDDITRRSLIY 462

Query: 395 GLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTP 454
           G C +N ++EA +   +     N      Y  +I+GLC+  +I  A+  +  ++  G  P
Sbjct: 463 GFCRANLVEEAGQVLKETSNRGNGIRGSTYRLVIQGLCKKKEIEMAIEVVEIMLTGGCKP 522

Query: 455 NIVCYNVVIDGACKLSMKREA 475
           +   Y  ++ G  ++ M  EA
Sbjct: 523 DETIYTAIVKGVEEMGMGSEA 543



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 100/407 (24%), Positives = 185/407 (45%), Gaps = 18/407 (4%)

Query: 97  EEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNH 156
           E D   NN    NL    C  G + +  ++ E M +   V    +C +++  L R  +  
Sbjct: 101 ENDEETNNEILHNL----CSNGKLTDACKLVEVMARHNQVPHFPSCSNLVRGLARIDQLD 156

Query: 157 GASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLV 216
            A  ++ VM   G  P  ++YN I+  LCK G    A  LLE+    G  P   TY  ++
Sbjct: 157 KAMCILRVMVMSGGVPDTITYNMIIGNLCKKGHIRTALVLLEDMSLSGSPPDVITYNTVI 216

Query: 217 EGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQ 276
             +    + E+A +  +  L            + +  +C        + VL  M    C 
Sbjct: 217 RCMFDYGNAEQAIRFWKDQLQNGCPPFMITYTVLVELVCRYCGSARAIEVLEDMAVEGCY 276

Query: 277 PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLN---VGRIQE 333
           PD++T N+++N  C+ G +EE   V+  +++      + VT+ T++  L +      ++E
Sbjct: 277 PDIVTYNSLVNYNCRRGNLEEVASVIQHILSHGL-ELNTVTYNTLLHSLCSHEYWDEVEE 335

Query: 334 ALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVI 393
            LN++YQ      Y P ++TYN ++ GL + R +  A + F  ML    + D  TY  V+
Sbjct: 336 ILNIMYQT----SYCPTVITYNILINGLCKARLLSRAIDFFYQMLEQKCLPDIVTYNTVL 391

Query: 394 DGLCESNQLDEAKRFW---DDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 450
             + +   +D+A        +   P  +     Y ++I GL + G + +A+   ++++D+
Sbjct: 392 GAMSKEGMVDDAIELLGLLKNTCCPPGL---ITYNSVIDGLAKKGLMKKALELYHQMLDA 448

Query: 451 GVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           G+ P+ +    +I G C+ ++  EA Q+L+E    G      T+R++
Sbjct: 449 GIFPDDITRRSLIYGFCRANLVEEAGQVLKETSNRGNGIRGSTYRLV 495



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 94/374 (25%), Positives = 174/374 (46%), Gaps = 4/374 (1%)

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           F ++ D P  +  N+E     ++ +LC +G+   A ++V VM +    P   S +++V G
Sbjct: 91  FGLSSDGPITE--NDEETNNEILHNLCSNGKLTDACKLVEVMARHNQVPHFPSCSNLVRG 148

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           L +     +A  +L   +  G +P   TY +++  LC +  +  A  +L+ M        
Sbjct: 149 LARIDQLDKAMCILRVMVMSGGVPDTITYNMIIGNLCKKGHIRTALVLLEDMSLSGSPPD 208

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               N  +R +    N  + +      LQ  C P +IT   ++   C+      A++VL 
Sbjct: 209 VITYNTVIRCMFDYGNAEQAIRFWKDQLQNGCPPFMITYTVLVELVCRYCGSARAIEVLE 268

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           DM A + C PD VT+ +++      G ++E  +++  ++   G     VTYN +L  L  
Sbjct: 269 DM-AVEGCYPDIVTYNSLVNYNCRRGNLEEVASVIQHIL-SHGLELNTVTYNTLLHSLCS 326

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
               +E +E+ N M          TY I+I+GLC++  L  A  F+  ++    + D   
Sbjct: 327 HEYWDEVEEILNIMYQTSYCPTVITYNILINGLCKARLLSRAIDFFYQMLEQKCLPDIVT 386

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y  ++  + + G + +A+  L  L ++   P ++ YN VIDG  K  + ++A ++  +M 
Sbjct: 387 YNTVLGAMSKEGMVDDAIELLGLLKNTCCPPGLITYNSVIDGLAKKGLMKKALELYHQML 446

Query: 484 KNGLNPDAVTWRIL 497
             G+ PD +T R L
Sbjct: 447 DAGIFPDDITRRSL 460



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/295 (22%), Positives = 124/295 (42%), Gaps = 40/295 (13%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C    + E   +   + S G   N V+Y TL+H  C     D   ++ + M      P  
Sbjct: 290 CRRGNLEEVASVIQHILSHGLELNTVTYNTLLHSLCSHEYWDEVEEILNIMYQTSYCPTV 349

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           +TY++L+ G+ + R + RA    +++ E+ K   D+   N        ++ +EG V++  
Sbjct: 350 ITYNILINGLCKARLLSRAIDFFYQMLEQ-KCLPDIVTYNTVLG----AMSKEGMVDDAI 404

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
            +                G + ++ C                     P L++YNS++ GL
Sbjct: 405 ELL---------------GLLKNTCC--------------------PPGLITYNSVIDGL 429

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
            K G   +A +L  + +  G  P + T + L+ G C  + +E+A +VL+   ++ +  R 
Sbjct: 430 AKKGLMKKALELYHQMLDAGIFPDDITRRSLIYGFCRANLVEEAGQVLKETSNRGNGIRG 489

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
               + ++ LC  K     + V+  ML   C+PD      ++ G  +MG   EA+
Sbjct: 490 STYRLVIQGLCKKKEIEMAIEVVEIMLTGGCKPDETIYTAIVKGVEEMGMGSEAV 544



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 96/199 (48%), Gaps = 1/199 (0%)

Query: 308 GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRV 367
           G     D  T   I+  L + G++ +A  L+ +VM +    P   + + ++RGL R+ ++
Sbjct: 97  GPITENDEETNNEILHNLCSNGKLTDACKLV-EVMARHNQVPHFPSCSNLVRGLARIDQL 155

Query: 368 EEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAM 427
           ++A  +   M+  G V D+ TY ++I  LC+   +  A    +D+    +  D   Y  +
Sbjct: 156 DKAMCILRVMVMSGGVPDTITYNMIIGNLCKKGHIRTALVLLEDMSLSGSPPDVITYNTV 215

Query: 428 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
           I+ +   G   +A+ F  + + +G  P ++ Y V+++  C+      A ++L +M   G 
Sbjct: 216 IRCMFDYGNAEQAIRFWKDQLQNGCPPFMITYTVLVELVCRYCGSARAIEVLEDMAVEGC 275

Query: 488 NPDAVTWRILDKLHGNRGN 506
            PD VT+  L   +  RGN
Sbjct: 276 YPDIVTYNSLVNYNCRRGN 294


>gi|357167655|ref|XP_003581269.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 587

 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 123/495 (24%), Positives = 232/495 (46%), Gaps = 14/495 (2%)

Query: 3   QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           +L  L   GE       ++S    P+V     L+   CR G    A +V +    CG   
Sbjct: 62  RLSSLVHRGELDAALRVVESSLCPPDVALANRLVRDLCRRGRPADAARVVEA---CGSAA 118

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
            ++TYS L  G  R   ++ A         R+ +   +  +  A+  L+ +LC  G V +
Sbjct: 119 TAVTYSALADGYCRVGRLDEA--------RRVVDGMPVLPSAYAYNPLMHALCVRGQVRD 170

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 182
              + ++M       +      ++++ C+      A  ++ +MR  G TP+ V+YN I+ 
Sbjct: 171 ALVLLDNMLYRGCAPDVVTYNILLEAACKGRGYRQAMELIDLMRVEGCTPTNVTYNVIMD 230

Query: 183 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242
           G+C+ G    A +LL     +G  P+   Y  +++GL      E   +++  M S+    
Sbjct: 231 GMCREGDVDYARELLNSLPSYGCTPNTVNYNTVLKGLRTAGRWEDVEELIAEMFSENCPP 290

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
                ++ + +LC        + +L  M +  C  +++T N V++G C+ G ++ AL +L
Sbjct: 291 SEATLSVVISSLCQEGLFQRAIRLLEKMSKHDCTANIVTYNAVVSGLCEQGHVDGALYLL 350

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
           ++M     C P+  T+  ++ GL N  R ++A +L+ + M Q    P I+T+N ++  L 
Sbjct: 351 SNMQTDG-CKPNIFTYNILVKGLCNAERWEDAEDLMAK-MSQTDCLPDILTFNTIIGFLC 408

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422
           +     +A EVF  M   G   +S TY+ VI+GL ++ +++++    +++      +   
Sbjct: 409 QKGLTMQAVEVFKQMPEKGCCPNSVTYSSVIEGLAKTGKMEQSLELLNEM-GSKGFNPEI 467

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
            Y  + + L    K+ EA+  +++L D+G++P  V YN ++ G C+     +A  IL  M
Sbjct: 468 NYHLLAECLNEEDKLVEAIQMVHKLQDTGISPQAVLYNTILLGLCRNGKTDQAIDILSNM 527

Query: 483 RKNGLNPDAVTWRIL 497
             +G  PD  T+ IL
Sbjct: 528 VSDGCMPDESTYSIL 542



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 135/490 (27%), Positives = 235/490 (47%), Gaps = 36/490 (7%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R  +A ++   +++ G     V+Y+ L  GYCR G +D A +V D M    VLP+
Sbjct: 98  LCRRGRPADAARV---VEACGSAATAVTYSALADGYCRVGRLDEARRVVDGM---PVLPS 151

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCR-EGYVN- 121
           +  Y+ L+  +     V  A VL+  +  R    + ++ N      L+++ C+  GY   
Sbjct: 152 AYAYNPLMHALCVRGQVRDALVLLDNMLYRGCAPDVVTYNI-----LLEAACKGRGYRQA 206

Query: 122 ----EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
               ++ R+    P   + N       ++D +CR G    A  ++  +   G TP+ V+Y
Sbjct: 207 MELIDLMRVEGCTPTNVTYNV------IMDGMCREGDVDYARELLNSLPSYGCTPNTVNY 260

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
           N+++ GL   G      +L+ E       PSE T  V++  LC E   ++A ++L+ M S
Sbjct: 261 NTVLKGLRTAGRWEDVEELIAEMFSENCPPSEATLSVVISSLCQEGLFQRAIRLLEKM-S 319

Query: 238 KKDVDRTRIC-NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIE 296
           K D     +  N  +  LC   +    L +L  M    C+P++ T N ++ G C   R E
Sbjct: 320 KHDCTANIVTYNAVVSGLCEQGHVDGALYLLSNMQTDGCKPNIFTYNILVKGLCNAERWE 379

Query: 297 EALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
           +A  ++  M +   C PD +TF TII  L   G   +A+ +  Q MP++G  P  VTY++
Sbjct: 380 DAEDLMAKM-SQTDCLPDILTFNTIIGFLCQKGLTMQAVEVFKQ-MPEKGCCPNSVTYSS 437

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA----KRFWDDI 412
           V+ GL +  ++E++ E+ N M   G   +   Y ++ + L E ++L EA     +  D  
Sbjct: 438 VIEGLAKTGKMEQSLELLNEMGSKGFNPE-INYHLLAECLNEEDKLVEAIQMVHKLQDTG 496

Query: 413 VWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMK 472
           + P  +    +Y  ++ GLCR+GK  +A+  L  +V  G  P+   Y+++I G       
Sbjct: 497 ISPQAV----LYNTILLGLCRNGKTDQAIDILSNMVSDGCMPDESTYSILIQGLAHEGYM 552

Query: 473 REAYQILREM 482
           +EA ++L  +
Sbjct: 553 KEARELLSTL 562



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 122/447 (27%), Positives = 206/447 (46%), Gaps = 43/447 (9%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M  LC   +V +A  L  +M  RG  P+VV+Y  L+   C+      A ++ D MR  G 
Sbjct: 159 MHALCVRGQVRDALVLLDNMLYRGCAPDVVTYNILLEAACKGRGYRQAMELIDLMRVEGC 218

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P ++TY+V++ G+ R  DV+ A  L+  L          + N   +  ++  L   G  
Sbjct: 219 TPTNVTYNVIMDGMCREGDVDYARELLNSL-----PSYGCTPNTVNYNTVLKGLRTAGRW 273

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +V  +  +M        E     +I SLC+ G    A R++  M K   T ++V+YN++
Sbjct: 274 EDVEELIAEMFSENCPPSEATLSVVISSLCQEGLFQRAIRLLEKMSKHDCTANIVTYNAV 333

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           V GLC+ G    A  LL      G  P+  TY +LV+GLC     E A            
Sbjct: 334 VSGLCEQGHVDGALYLLSNMQTDGCKPNIFTYNILVKGLCNAERWEDAE----------- 382

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                                   +++  M QT C PD++T NT+I   C+ G   +A++
Sbjct: 383 ------------------------DLMAKMSQTDCLPDILTFNTIIGFLCQKGLTMQAVE 418

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           V   M   K C P++VT++++I GL   G+++++L LL + M  +G++P I  Y+ +   
Sbjct: 419 VFKQM-PEKGCCPNSVTYSSVIEGLAKTGKMEQSLELLNE-MGSKGFNPEI-NYHLLAEC 475

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L    ++ EA ++ + +   G+   +  Y  ++ GLC + + D+A     ++V    + D
Sbjct: 476 LNEEDKLVEAIQMVHKLQDTGISPQAVLYNTILLGLCRNGKTDQAIDILSNMVSDGCMPD 535

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYEL 447
              Y+ +I+GL   G + EA   L  L
Sbjct: 536 ESTYSILIQGLAHEGYMKEARELLSTL 562



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 88/355 (24%), Positives = 153/355 (43%), Gaps = 48/355 (13%)

Query: 146 IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY-NSIVHGLCKHGGCMRAYQLLEEGIQFG 204
           + SL   G    A RVV    +  L P  V+  N +V  LC+ G    A +++E     G
Sbjct: 63  LSSLVHRGELDAALRVV----ESSLCPPDVALANRLVRDLCRRGRPADAARVVE---ACG 115

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL 264
              +  TY  L +G C    L++AR+V+  M                             
Sbjct: 116 SAATAVTYSALADGYCRVGRLDEARRVVDGM----------------------------- 146

Query: 265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 324
            VL         P     N +++  C  G++ +AL +L++M+  + CAPD VT+  ++  
Sbjct: 147 PVL---------PSAYAYNPLMHALCVRGQVRDALVLLDNMLY-RGCAPDVVTYNILLEA 196

Query: 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 384
                  ++A+ L+  +M   G +P  VTYN ++ G+ R   V+ A+E+ N +   G   
Sbjct: 197 ACKGRGYRQAMELI-DLMRVEGCTPTNVTYNVIMDGMCREGDVDYARELLNSLPSYGCTP 255

Query: 385 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFL 444
           ++  Y  V+ GL  + + ++ +    ++   +        + +I  LC+ G    A+  L
Sbjct: 256 NTVNYNTVLKGLRTAGRWEDVEELIAEMFSENCPPSEATLSVVISSLCQEGLFQRAIRLL 315

Query: 445 YELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
            ++     T NIV YN V+ G C+      A  +L  M+ +G  P+  T+ IL K
Sbjct: 316 EKMSKHDCTANIVTYNAVVSGLCEQGHVDGALYLLSNMQTDGCKPNIFTYNILVK 370



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 67/275 (24%), Positives = 120/275 (43%), Gaps = 40/275 (14%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +  LC       A +L   M       N+V+Y  ++ G C  G +D A  +   M+  G 
Sbjct: 299 ISSLCQEGLFQRAIRLLEKMSKHDCTANIVTYNAVVSGLCEQGHVDGALYLLSNMQTDGC 358

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN  TY++LV+G+      E A  LM K+      + D   +   F  ++  LC++G  
Sbjct: 359 KPNIFTYNILVKGLCNAERWEDAEDLMAKM-----SQTDCLPDILTFNTIIGFLCQKGLT 413

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHG----------------------- 157
            +   + + MP+            +I+ L ++G+                          
Sbjct: 414 MQAVEVFKQMPEKGCCPNSVTYSSVIEGLAKTGKMEQSLELLNEMGSKGFNPEINYHLLA 473

Query: 158 -----------ASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL 206
                      A ++V+ ++  G++P  V YN+I+ GLC++G   +A  +L   +  G +
Sbjct: 474 ECLNEEDKLVEAIQMVHKLQDTGISPQAVLYNTILLGLCRNGKTDQAIDILSNMVSDGCM 533

Query: 207 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
           P E TY +L++GL  E  +++AR++L   LS +DV
Sbjct: 534 PDESTYSILIQGLAHEGYMKEARELLS-TLSSRDV 567



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 49/96 (51%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           EA ++   ++  G  P  V Y T++ G CR G+ D A  +   M   G +P+  TYS+L+
Sbjct: 484 EAIQMVHKLQDTGISPQAVLYNTILLGLCRNGKTDQAIDILSNMVSDGCMPDESTYSILI 543

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAF 107
           +G+     ++ A  L+  L  R    ++L  N+A+ 
Sbjct: 544 QGLAHEGYMKEARELLSTLSSRDVIVDNLIKNDASL 579


>gi|302142099|emb|CBI19302.3| unnamed protein product [Vitis vinifera]
          Length = 609

 Score =  168 bits (426), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 100/348 (28%), Positives = 183/348 (52%), Gaps = 2/348 (0%)

Query: 105 AAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYV 164
           + F+  V + C+E  V +  ++ ++M    S  +      +I+ +C+ GR   A + +  
Sbjct: 83  SGFSFYVQTTCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNN 142

Query: 165 MRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESD 224
           M   G  P+++++N I+  +C  G  M A +LL + ++ G  PS  T+ +L+  LC +  
Sbjct: 143 MPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGL 202

Query: 225 LEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNT 284
           L +A  +L+ M        +   N  L   C  K     +  L  M+   C PD++T NT
Sbjct: 203 LGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNT 262

Query: 285 VINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ 344
           ++   CK G+++ A+++LN + + K C+P  +T+ T+I GL  VG+ + A+ LL + M +
Sbjct: 263 LLTALCKDGKVDVAVEILNQL-SSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDE-MRR 320

Query: 345 RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 404
           +G  P I+TY++++ GL R  +V+EA + F+ + G+G+  ++ TY  ++ GLC+S Q D 
Sbjct: 321 KGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDR 380

Query: 405 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGV 452
           A  F   ++          Y  +I+G+   G   EA+  L EL   G+
Sbjct: 381 AIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNELCSRGL 428



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 94/342 (27%), Positives = 177/342 (51%), Gaps = 2/342 (0%)

Query: 146 IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY 205
           + + C+      A +++  MR +G  P +V+YN +++G+CK G    A + L     +G 
Sbjct: 89  VQTTCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGC 148

Query: 206 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 265
            P+  T+ +++  +C       A K+L  ML K         NI +  LC        ++
Sbjct: 149 QPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAID 208

Query: 266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 325
           +L  M    C P+ ++ N +++GFCK  +++ A++ L+ MV+ + C PD VT+ T++  L
Sbjct: 209 ILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVS-RGCYPDIVTYNTLLTAL 267

Query: 326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 385
              G++  A+ +L Q +  +G SP ++TYN V+ GL ++ + E A ++ + M   G+  D
Sbjct: 268 CKDGKVDVAVEILNQ-LSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPD 326

Query: 386 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY 445
             TY+ ++ GL    ++DEA +F+ D+       +   Y +++ GLC+S +   A+ FL 
Sbjct: 327 IITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLA 386

Query: 446 ELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
            ++     P    Y ++I+G     + +EA  +L E+   GL
Sbjct: 387 YMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNELCSRGL 428



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 101/325 (31%), Positives = 157/325 (48%), Gaps = 2/325 (0%)

Query: 173 SLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVL 232
           SL  ++  V   CK  G  +A +LL+E    G  P   TY VL+ G+C E  L++A K L
Sbjct: 81  SLSGFSFYVQTTCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFL 140

Query: 233 QFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKM 292
             M S          NI LR++C      +   +L  ML+  C P V+T N +IN  C+ 
Sbjct: 141 NNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQ 200

Query: 293 GRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIV 352
           G +  A+ +L  M     C P+++++  ++ G     ++  A+  L  +M  RG  P IV
Sbjct: 201 GLLGRAIDILEKMPMHG-CTPNSLSYNPLLHGFCKEKKMDRAIEYL-DIMVSRGCYPDIV 258

Query: 353 TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI 412
           TYN +L  L +  +V+ A E+ N +   G      TY  VIDGL +  + + A +  D++
Sbjct: 259 TYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEM 318

Query: 413 VWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMK 472
                  D   Y++++ GL R GK+ EA+ F ++L   G+ PN + YN ++ G CK    
Sbjct: 319 RRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQT 378

Query: 473 REAYQILREMRKNGLNPDAVTWRIL 497
             A   L  M      P   T+ IL
Sbjct: 379 DRAIDFLAYMISKRCKPTEATYTIL 403



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 98/388 (25%), Positives = 179/388 (46%), Gaps = 42/388 (10%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C  S VG+A KL  +M+++G  P+VV+Y  LI+G C+ G +D A K  + M   G  PN 
Sbjct: 93  CKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNV 152

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           +T+++++R +  T     A  L+  +  +       S +   F  L++ LCR+G +    
Sbjct: 153 ITHNIILRSMCSTGRWMDAEKLLSDMLRK-----GCSPSVVTFNILINFLCRQGLLGRAI 207

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
            I E MP         +   ++   C+  +   A   + +M  RG  P +V+YN+++  L
Sbjct: 208 DILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTAL 267

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
           CK G    A ++L +    G  P   TY  +++GL      E+A K+L  M  K      
Sbjct: 268 CKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRK------ 321

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
                                          +PD+IT +++++G  + G+++EA+K  +D
Sbjct: 322 -----------------------------GLKPDIITYSSLVSGLSREGKVDEAIKFFHD 352

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
           +  G    P+A+T+ +I+ GL    +   A++ L  ++ +R   P   TY  ++ G+   
Sbjct: 353 L-EGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRC-KPTEATYTILIEGIAYE 410

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIV 392
              +EA ++ N +   G+V  S+   + 
Sbjct: 411 GLAKEALDLLNELCSRGLVKKSSAEQVA 438



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 85/341 (24%), Positives = 157/341 (46%), Gaps = 41/341 (12%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ +C   R+ EA K   +M S G  PNV+++  ++   C TG    A K+  +M   G 
Sbjct: 124 INGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGC 183

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +T+++L+  + R   + RA      + E+M      + N+ ++  L+   C+E  +
Sbjct: 184 SPSVVTFNILINFLCRQGLLGRA----IDILEKM-PMHGCTPNSLSYNPLLHGFCKEKKM 238

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +      + M       +      ++ +LC+ G+   A  ++  +  +G +P L++YN++
Sbjct: 239 DRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTV 298

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GL K G   RA +LL+E  + G  P   TY  LV GL  E  +++A K         D
Sbjct: 299 IDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFH------D 352

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           ++   I                             +P+ IT N+++ G CK  + + A+ 
Sbjct: 353 LEGLGI-----------------------------RPNAITYNSIMLGLCKSRQTDRAID 383

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQV 341
            L  M++ K C P   T+T +I G+   G  +EAL+LL ++
Sbjct: 384 FLAYMIS-KRCKPTEATYTILIEGIAYEGLAKEALDLLNEL 423


>gi|255556314|ref|XP_002519191.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541506|gb|EEF43055.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 719

 Score =  168 bits (426), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 124/493 (25%), Positives = 227/493 (46%), Gaps = 19/493 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D L   + +  A+  F  M +    P+  +Y  LIHG CR+G +D A ++  +M   G 
Sbjct: 224 IDALVKSNSLDLAYLKFQQMSADNCKPDRFTYNILIHGVCRSGVVDEALRLVKQMEGLGY 283

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN  TY++L+ G    + V+ A    F++ E MK  + +S + A   + +  + R    
Sbjct: 284 SPNVFTYTILIDGFFNAKKVDEA----FRVLETMKARK-VSPSEATIRSFIHGVFRCVAP 338

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN-- 178
           N+ F +A +  + + V +  AC  ++  L        A  ++    K G  P   ++N  
Sbjct: 339 NKAFELAIEFIEREPVLQRLACDTLLCCLSSKNMAREAGALLKKFGKIGHKPDSATFNIA 398

Query: 179 --SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFML 236
              ++ G   +  C    + +E+G++FG+     TY  L++ L     + +       M+
Sbjct: 399 MNCLIKGFDLNEVCNILDRFVEQGMKFGF----STYLALIKALYMAGKVTEGNHYFNQMV 454

Query: 237 SKKDVDRTRIC--NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGR 294
             KD     +C  N+ +   C      +  N    M      P+++T NT+I+G+CK G 
Sbjct: 455 --KDGLLCNVCSYNMVIDCFCKTSMMDKATNTFKEMQYKGIPPNLVTFNTLIDGYCKGGE 512

Query: 295 IEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTY 354
           I ++  +L  ++   F  PD  TF++II GL    +I++AL    + M   G SP  VTY
Sbjct: 513 ICKSRDLLVMLLEHGF-KPDIFTFSSIIDGLCRAKQIEDALGCFSE-MVMWGLSPNAVTY 570

Query: 355 NAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVW 414
           N ++  L  +  V  + ++   M   G+  D  ++  +I   C   ++++AK+ +  ++ 
Sbjct: 571 NILIHSLCIIGDVPRSMKLLRKMQTDGINPDVFSFNALIQSFCRMGKVEDAKKLFSSMLS 630

Query: 415 PSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKRE 474
              I DNY Y A IK  C+SG+ +EA      +  +G  P+    N+++D   K      
Sbjct: 631 LGLIPDNYTYVAFIKVFCQSGRFNEAKELFLSMEANGCMPDSFTCNIILDALVKQDQFEA 690

Query: 475 AYQILREMRKNGL 487
           A +I +   + G+
Sbjct: 691 AQKIAKTCSEWGI 703



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 87/354 (24%), Positives = 169/354 (47%), Gaps = 4/354 (1%)

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
           +ID+L +S     A      M      P   +YN ++HG+C+ G    A +L+++    G
Sbjct: 223 VIDALVKSNSLDLAYLKFQQMSADNCKPDRFTYNILIHGVCRSGVVDEALRLVKQMEGLG 282

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL 264
           Y P+  TY +L++G      +++A +VL+ M ++K          ++  +     P +  
Sbjct: 283 YSPNVFTYTILIDGFFNAKKVDEAFRVLETMKARKVSPSEATIRSFIHGVFRCVAPNKAF 342

Query: 265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC-APDAVTFTTIIF 323
            + +  ++ +     +  +T++          EA  +L     GK    PD+ TF   + 
Sbjct: 343 ELAIEFIEREPVLQRLACDTLLCCLSSKNMAREAGALLKKF--GKIGHKPDSATFNIAMN 400

Query: 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 383
            L+    + E  N+L + + Q G   G  TY A+++ L+   +V E    FN M+  G++
Sbjct: 401 CLIKGFDLNEVCNILDRFVEQ-GMKFGFSTYLALIKALYMAGKVTEGNHYFNQMVKDGLL 459

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
            +  +Y +VID  C+++ +D+A   + ++ +     +   +  +I G C+ G+I ++   
Sbjct: 460 CNVCSYNMVIDCFCKTSMMDKATNTFKEMQYKGIPPNLVTFNTLIDGYCKGGEICKSRDL 519

Query: 444 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           L  L++ G  P+I  ++ +IDG C+     +A     EM   GL+P+AVT+ IL
Sbjct: 520 LVMLLEHGFKPDIFTFSSIIDGLCRAKQIEDALGCFSEMVMWGLSPNAVTYNIL 573



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 104/494 (21%), Positives = 221/494 (44%), Gaps = 13/494 (2%)

Query: 15  KLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGV 74
           +L  D+K+ G+  N      LI  + R G      ++F ++   G+ P++  Y+ ++  +
Sbjct: 168 ELLKDIKASGYRINEELLCILIGSWGRLGLAKYCDEIFGQISFLGISPSTRLYNAVIDAL 227

Query: 75  LRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGK 134
           +++  ++    L +  +++M   ++   +   +  L+  +CR G V+E  R+ + M    
Sbjct: 228 VKSNSLD----LAYLKFQQM-SADNCKPDRFTYNILIHGVCRSGVVDEALRLVKQMEGLG 282

Query: 135 SVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAY 194
                F    +ID    + +   A RV+  M+ R ++PS  +  S +HG+ +     +A+
Sbjct: 283 YSPNVFTYTILIDGFFNAKKVDEAFRVLETMKARKVSPSEATIRSFIHGVFRCVAPNKAF 342

Query: 195 QLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRAL 254
           +L  E I+   +        L+  L  ++   +A  +L+          +   NI +   
Sbjct: 343 ELAIEFIEREPVLQRLACDTLLCCLSSKNMAREAGALLKKFGKIGHKPDSATFNIAMN-- 400

Query: 255 CLIK--NPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA-GKFC 311
           CLIK  +  E+ N+L   ++   +    T   +I      G++ E     N MV  G  C
Sbjct: 401 CLIKGFDLNEVCNILDRFVEQGMKFGFSTYLALIKALYMAGKVTEGNHYFNQMVKDGLLC 460

Query: 312 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK 371
             +  ++  +I        + +A N  ++ M  +G  P +VT+N ++ G  +   + +++
Sbjct: 461 --NVCSYNMVIDCFCKTSMMDKATNT-FKEMQYKGIPPNLVTFNTLIDGYCKGGEICKSR 517

Query: 372 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 431
           ++   +L  G   D  T++ +IDGLC + Q+++A   + ++V      +   Y  +I  L
Sbjct: 518 DLLVMLLEHGFKPDIFTFSSIIDGLCRAKQIEDALGCFSEMVMWGLSPNAVTYNILIHSL 577

Query: 432 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 491
           C  G +  ++  L ++   G+ P++  +N +I   C++    +A ++   M   GL PD 
Sbjct: 578 CIIGDVPRSMKLLRKMQTDGINPDVFSFNALIQSFCRMGKVEDAKKLFSSMLSLGLIPDN 637

Query: 492 VTWRILDKLHGNRG 505
            T+    K+    G
Sbjct: 638 YTYVAFIKVFCQSG 651



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/206 (23%), Positives = 96/206 (46%), Gaps = 5/206 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C    + ++  L   +   G  P++ +++++I G CR  +++ A   F EM   G+
Sbjct: 504 IDGYCKGGEICKSRDLLVMLLEHGFKPDIFTFSSIIDGLCRAKQIEDALGCFSEMVMWGL 563

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN++TY++L+  +    DV R+  L+ K+     + + ++ +  +F  L+ S CR G V
Sbjct: 564 SPNAVTYNILIHSLCIIGDVPRSMKLLRKM-----QTDGINPDVFSFNALIQSFCRMGKV 618

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +  ++   M     + + +     I   C+SGR + A  +   M   G  P   + N I
Sbjct: 619 EDAKKLFSSMLSLGLIPDNYTYVAFIKVFCQSGRFNEAKELFLSMEANGCMPDSFTCNII 678

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYL 206
           +  L K      A ++ +   ++G L
Sbjct: 679 LDALVKQDQFEAAQKIAKTCSEWGIL 704


>gi|296087527|emb|CBI34116.3| unnamed protein product [Vitis vinifera]
          Length = 727

 Score =  168 bits (426), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 127/544 (23%), Positives = 229/544 (42%), Gaps = 111/544 (20%)

Query: 9   RVG---EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSL 65
           RVG   EA    F  K RG VP+++S   L++     G++D+A  ++  ++  G+ PN  
Sbjct: 169 RVGMFDEAIDALFQTKRRGFVPHIMSCNFLMNRLIEHGKIDMAVAIYRHLKRLGLNPNDY 228

Query: 66  TYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFR 125
           TY + ++                                        +LCR+G   E   
Sbjct: 229 TYGIFIK----------------------------------------ALCRKGNFEEAVD 248

Query: 126 IAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLC 185
           +  +M +         C   I+ LC   R+      +  +R         +Y +++ G C
Sbjct: 249 VFREMEEAGVNPNAVTCSTYIEGLCSHKRSDLGYEALRALRAANWPIDTFAYTAVIRGFC 308

Query: 186 KHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTR 245
                  A  +  + +  G  P  + Y  L+   C      KA  +LQ +    D+    
Sbjct: 309 SEMKLKEAEDVFIDMVNEGIAPDGYIYGALIHAYC------KAGNLLQAVALHNDMVSNG 362

Query: 246 ICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM 305
           I         L+    E  +  +F+       D +  N V++  CK+G++EEA+++LN+M
Sbjct: 363 I------KTNLVDQFKEFRDSGIFL-------DEVLYNIVVDALCKLGKVEEAVELLNEM 409

Query: 306 VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLR 365
             G+  + D V +TT+I G    G++ +A N+ ++ M +RG  P IVTYN ++ G  R  
Sbjct: 410 -KGRRMSLDVVHYTTLIAGYCLQGKLVDAKNM-FEEMKERGIEPDIVTYNILVGGFSRNG 467

Query: 366 RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI------------- 412
             +EA E+ +C+   G+  +S T+  +I+GLC + ++ EA+ F + +             
Sbjct: 468 LKKEALELLDCIGTQGLKPNSATHNRIIEGLCMAGKVKEAEAFLNTLEDKCLENYSAMVD 527

Query: 413 ------------------------------VWPSNIHDNYVYAAMIKGLCRSGKIHEAVH 442
                                         V P+ I    +Y  +I   CR G +  A  
Sbjct: 528 GYCKANFTRKAYELFSRLSKQGILRMLALDVEPNQI----MYGKLIGAFCRDGDMKRAQL 583

Query: 443 FLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
               LV+ G+TP+++ Y ++I+G C+++  REA  I  +M++ G+ PD +T+ ++   H 
Sbjct: 584 VFDMLVERGITPDVITYTMMINGYCRVNCLREARDIFNDMKERGIKPDVITYTVVLDGHS 643

Query: 503 NRGN 506
              N
Sbjct: 644 KTNN 647



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 112/502 (22%), Positives = 215/502 (42%), Gaps = 64/502 (12%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M++L    ++  A  ++  +K  G  PN  +Y   I   CR G  + A  VF EM   GV
Sbjct: 199 MNRLIEHGKIDMAVAIYRHLKRLGLNPNDYTYGIFIKALCRKGNFEEAVDVFREMEEAGV 258

Query: 61  LPNSLTYSVLVRGVLRTR----DVERANVLMFKLWE-----------------RMKEEED 99
            PN++T S  + G+   +      E    L    W                  ++KE ED
Sbjct: 259 NPNAVTCSTYIEGLCSHKRSDLGYEALRALRAANWPIDTFAYTAVIRGFCSEMKLKEAED 318

Query: 100 LSV---------NNAAFANLVDSLCREGYVNEVFRIAEDM-PQGKSVN------------ 137
           + +         +   +  L+ + C+ G + +   +  DM   G   N            
Sbjct: 319 VFIDMVNEGIAPDGYIYGALIHAYCKAGNLLQAVALHNDMVSNGIKTNLVDQFKEFRDSG 378

Query: 138 ---EEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAY 194
              +E     ++D+LC+ G+   A  ++  M+ R ++  +V Y +++ G C  G  + A 
Sbjct: 379 IFLDEVLYNIVVDALCKLGKVEEAVELLNEMKGRRMSLDVVHYTTLIAGYCLQGKLVDAK 438

Query: 195 QLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRAL 254
            + EE  + G  P   TY +LV G       ++A ++L  + ++     +   N  +  L
Sbjct: 439 NMFEEMKERGIEPDIVTYNILVGGFSRNGLKKEALELLDCIGTQGLKPNSATHNRIIEGL 498

Query: 255 CL---IKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKF- 310
           C+   +K     LN     L+ +C  +    + +++G+CK     +A ++ + +      
Sbjct: 499 CMAGKVKEAEAFLNT----LEDKCLEN---YSAMVDGYCKANFTRKAYELFSRLSKQGIL 551

Query: 311 ------CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
                   P+ + +  +I      G ++ A  L++ ++ +RG +P ++TY  ++ G  R+
Sbjct: 552 RMLALDVEPNQIMYGKLIGAFCRDGDMKRA-QLVFDMLVERGITPDVITYTMMINGYCRV 610

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY 424
             + EA+++FN M   G+  D  TY +V+DG  ++N L +A   +D+++      D   Y
Sbjct: 611 NCLREARDIFNDMKERGIKPDVITYTVVLDGHSKTNNLQDAINLYDEMIARGLQPDIVTY 670

Query: 425 AAMIKGLCRSGKIHEAVHFLYE 446
            A++ G C  G  H    +L E
Sbjct: 671 TALLPGKCNFGSRHFDNQWLEE 692


>gi|297835856|ref|XP_002885810.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331650|gb|EFH62069.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 536

 Score =  168 bits (426), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 103/361 (28%), Positives = 178/361 (49%), Gaps = 3/361 (0%)

Query: 148 SLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLP 207
           SLC++G +  A ++   M+  G++P+      +V    + G    A  LL +  +     
Sbjct: 112 SLCKAGMHDLAGQMFECMKSDGISPNSRLLGFLVSSFAEKGKLHCATALLLQSYEVE--G 169

Query: 208 SEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVL 267
                  L+  L     +E A K+ +  L  +  + T+  NI +R LC +    + + +L
Sbjct: 170 CCMVVNSLLNTLVKLDRVEDAMKLFEEHLRFQSCNDTKTFNILIRGLCGVGKAEKAVELL 229

Query: 268 VFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLN 327
             M    C PD++T NT+I GFCK   +++A ++ +D+ +   C+PD VT+T++I G   
Sbjct: 230 GGMSGFGCLPDIVTYNTLIKGFCKSNELKKANEMFDDVKSSSGCSPDVVTYTSMISGYCK 289

Query: 328 VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADST 387
            G++QEA ++L   M + G  P  VT+N ++ G  +   +  A+E+   M+  G   D  
Sbjct: 290 AGKMQEA-SVLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMHTAEEIRGKMISFGCFPDVV 348

Query: 388 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYEL 447
           T+  +IDG C   Q+++  R W+++       + + Y+ +I  LC+  ++ +A   L +L
Sbjct: 349 TFTSLIDGYCRVGQVNQGFRLWEEMNARGMFPNAFTYSILINALCKENRLLKARELLGQL 408

Query: 448 VDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGND 507
               + P    YN VIDG CK     EA  I+ EM K    PD +T+ IL   H  +G  
Sbjct: 409 ASKDIIPQPFMYNPVIDGFCKAGKVNEAIVIVEEMEKKKCKPDKITFTILIIGHCMKGRM 468

Query: 508 F 508
           F
Sbjct: 469 F 469



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 90/337 (26%), Positives = 171/337 (50%), Gaps = 5/337 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ L  L RV +A KLF +        +  ++  LI G C  G+ + A ++   M   G 
Sbjct: 178 LNTLVKLDRVEDAMKLFEEHLRFQSCNDTKTFNILIRGLCGVGKAEKAVELLGGMSGFGC 237

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           LP+ +TY+ L++G  ++ ++++AN    ++++ +K     S +   + +++   C+ G +
Sbjct: 238 LPDIVTYNTLIKGFCKSNELKKAN----EMFDDVKSSSGCSPDVVTYTSMISGYCKAGKM 293

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E   + +DM +            ++D   ++G  H A  +   M   G  P +V++ S+
Sbjct: 294 QEASVLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMHTAEEIRGKMISFGCFPDVVTFTSL 353

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G C+ G   + ++L EE    G  P+  TY +L+  LC E+ L KAR++L  + SK  
Sbjct: 354 IDGYCRVGQVNQGFRLWEEMNARGMFPNAFTYSILINALCKENRLLKARELLGQLASKDI 413

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           + +  + N  +   C      E + ++  M + +C+PD IT   +I G C  GR+ EA+ 
Sbjct: 414 IPQPFMYNPVIDGFCKAGKVNEAIVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVS 473

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNL 337
           + + MVA   C+PD +T ++++  LL  G  +EA +L
Sbjct: 474 IFHKMVAIG-CSPDKITVSSLLSCLLKAGMAKEAYHL 509



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 110/462 (23%), Positives = 208/462 (45%), Gaps = 45/462 (9%)

Query: 31  SYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKL 90
           +Y  L    C+ G  D+A ++F+ M+  G+ PNS     LV        +  A  L+ + 
Sbjct: 105 TYNLLTRSLCKAGMHDLAGQMFECMKSDGISPNSRLLGFLVSSFAEKGKLHCATALLLQS 164

Query: 91  WERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC 150
           +E   E   + VN     +L+++L +   V +  ++ E+  + +S N+      +I  LC
Sbjct: 165 YEV--EGCCMVVN-----SLLNTLVKLDRVEDAMKLFEEHLRFQSCNDTKTFNILIRGLC 217

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE-GIQFGYLPSE 209
             G+   A  ++  M   G  P +V+YN+++ G CK     +A ++ ++     G  P  
Sbjct: 218 GVGKAEKAVELLGGMSGFGCLPDIVTYNTLIKGFCKSNELKKANEMFDDVKSSSGCSPDV 277

Query: 210 HTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVF 269
            TY  ++ G C    +++A  +L  ML            IY                   
Sbjct: 278 VTYTSMISGYCKAGKMQEASVLLDDMLR---------LGIY------------------- 309

Query: 270 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG 329
                  P  +T N +++G+ K G +  A ++   M++   C PD VTFT++I G   VG
Sbjct: 310 -------PTNVTFNVLVDGYAKAGEMHTAEEIRGKMISFG-CFPDVVTFTSLIDGYCRVG 361

Query: 330 RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTY 389
           ++ +    L++ M  RG  P   TY+ ++  L +  R+ +A+E+   +    ++     Y
Sbjct: 362 QVNQGFR-LWEEMNARGMFPNAFTYSILINALCKENRLLKARELLGQLASKDIIPQPFMY 420

Query: 390 AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449
             VIDG C++ +++EA    +++       D   +  +I G C  G++ EAV   +++V 
Sbjct: 421 NPVIDGFCKAGKVNEAIVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVA 480

Query: 450 SGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 491
            G +P+ +  + ++    K  M +EAY + +   K  +N  A
Sbjct: 481 IGCSPDKITVSSLLSCLLKAGMAKEAYHLNQIAHKGQINDGA 522


>gi|12320851|gb|AAG50561.1|AC073506_3 hypothetical protein [Arabidopsis thaliana]
          Length = 802

 Score =  168 bits (425), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 125/482 (25%), Positives = 229/482 (47%), Gaps = 18/482 (3%)

Query: 3   QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           +LC  SR     ++   MK RG      +++ ++  Y R G++  A KV   M+  GV P
Sbjct: 221 KLCQGSR-----RVLVLMKRRGIYRTPEAFSRVMVSYSRAGQLRDALKVLTLMQRAGVEP 275

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           N L  +  +   +R   +E+A     +  ERM +   +  N   +  ++   C    V E
Sbjct: 276 NLLICNTTIDVFVRANRLEKA----LRFLERM-QVVGIVPNVVTYNCMIRGYCDLHRVEE 330

Query: 123 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKR-GLTPSLVSYNSIV 181
              + EDM     + ++ +   ++  LC+  R      ++  M K  GL P  V+YN+++
Sbjct: 331 AIELLEDMHSKGCLPDKVSYYTIMGYLCKEKRIVEVRDLMKKMAKEHGLVPDQVTYNTLI 390

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
           H L KH     A   L++  + G+   +  Y  +V  LC E  + +A+ ++  M    DV
Sbjct: 391 HMLTKHDHADEALWFLKDAQEKGFRIDKLGYSAIVHALCKEGRMSEAKDLINEMDCPPDV 450

Query: 242 -DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
              T + N + R L  +    +LL V   M     +P+ ++   ++NG C+ G+  EA +
Sbjct: 451 VTYTAVVNGFCR-LGEVDKAKKLLQV---MHTHGHKPNTVSYTALLNGMCRTGKSLEARE 506

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           ++N M    + +P+++T++ I+ GL   G++ EA +++ + M  +G+ PG V  N +L+ 
Sbjct: 507 MMN-MSEEHWWSPNSITYSVIMHGLRREGKLSEACDVVRE-MVLKGFFPGPVEINLLLQS 564

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L R  R  EA++     L  G   +   +  VI G C++++LD A    DD+   +   D
Sbjct: 565 LCRDGRTHEARKFMEECLNKGCAINVVNFTTVIHGFCQNDELDAALSVLDDMYLINKHAD 624

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
            + Y  ++  L + G+I EA   + +++  G+ P  V Y  VI   C++    +   IL 
Sbjct: 625 VFTYTTLVDTLGKKGRIAEATELMKKMLHKGIDPTPVTYRTVIHRYCQMGKVDDLVAILE 684

Query: 481 EM 482
           +M
Sbjct: 685 KM 686



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 109/405 (26%), Positives = 192/405 (47%), Gaps = 14/405 (3%)

Query: 106 AFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVM 165
           AF+ ++ S  R G + +  ++   M +         C   ID   R+ R   A R +  M
Sbjct: 244 AFSRVMVSYSRAGQLRDALKVLTLMQRAGVEPNLLICNTTIDVFVRANRLEKALRFLERM 303

Query: 166 RKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDL 225
           +  G+ P++V+YN ++ G C       A +LLE+    G LP + +Y  ++  LC E  +
Sbjct: 304 QVVGIVPNVVTYNCMIRGYCDLHRVEEAIELLEDMHSKGCLPDKVSYYTIMGYLCKEKRI 363

Query: 226 EKARKVLQFMLSKKDVDRTRIC-NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNT 284
            + R +++ M  +  +   ++  N  +  L    +  E L  L    +   + D +  + 
Sbjct: 364 VEVRDLMKKMAKEHGLVPDQVTYNTLIHMLTKHDHADEALWFLKDAQEKGFRIDKLGYSA 423

Query: 285 VINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ 344
           +++  CK GR+ EA  ++N+M     C PD VT+T ++ G   +G + +A  LL QVM  
Sbjct: 424 IVHALCKEGRMSEAKDLINEMD----CPPDVVTYTAVVNGFCRLGEVDKAKKLL-QVMHT 478

Query: 345 RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 404
            G+ P  V+Y A+L G+ R  +  EA+E+ N         +S TY++++ GL    +L E
Sbjct: 479 HGHKPNTVSYTALLNGMCRTGKSLEAREMMNMSEEHWWSPNSITYSVIMHGLRREGKLSE 538

Query: 405 AKRFWDDIV----WPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYN 460
           A     ++V    +P  +  N     +++ LCR G+ HEA  F+ E ++ G   N+V + 
Sbjct: 539 ACDVVREMVLKGFFPGPVEINL----LLQSLCRDGRTHEARKFMEECLNKGCAINVVNFT 594

Query: 461 VVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
            VI G C+      A  +L +M     + D  T+  L    G +G
Sbjct: 595 TVIHGFCQNDELDAALSVLDDMYLINKHADVFTYTTLVDTLGKKG 639



 Score =  151 bits (381), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 119/487 (24%), Positives = 227/487 (46%), Gaps = 38/487 (7%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D     +R+ +A +    M+  G VPNVV+Y  +I GYC    ++ A ++ ++M   G 
Sbjct: 284 IDVFVRANRLEKALRFLERMQVVGIVPNVVTYNCMIRGYCDLHRVEEAIELLEDMHSKGC 343

Query: 61  LPNSLTYSVLV------RGVLRTRDVERA--------------NVLMFKLWE-------- 92
           LP+ ++Y  ++      + ++  RD+ +               N L+  L +        
Sbjct: 344 LPDKVSYYTIMGYLCKEKRIVEVRDLMKKMAKEHGLVPDQVTYNTLIHMLTKHDHADEAL 403

Query: 93  ---RMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSL 149
              +  +E+   ++   ++ +V +LC+EG ++E   +  +M     V    A   +++  
Sbjct: 404 WFLKDAQEKGFRIDKLGYSAIVHALCKEGRMSEAKDLINEMDCPPDVVTYTA---VVNGF 460

Query: 150 CRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSE 209
           CR G    A +++ VM   G  P+ VSY ++++G+C+ G  + A +++    +  + P+ 
Sbjct: 461 CRLGEVDKAKKLLQVMHTHGHKPNTVSYTALLNGMCRTGKSLEAREMMNMSEEHWWSPNS 520

Query: 210 HTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVF 269
            TY V++ GL  E  L +A  V++ M+ K         N+ L++LC      E    +  
Sbjct: 521 ITYSVIMHGLRREGKLSEACDVVREMVLKGFFPGPVEINLLLQSLCRDGRTHEARKFMEE 580

Query: 270 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG 329
            L   C  +V+   TVI+GFC+   ++ AL VL+DM      A D  T+TT++  L   G
Sbjct: 581 CLNKGCAINVVNFTTVIHGFCQNDELDAALSVLDDMYLINKHA-DVFTYTTLVDTLGKKG 639

Query: 330 RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTY 389
           RI EA  L+ +++  +G  P  VTY  V+    ++ +V++   +   M  I      T Y
Sbjct: 640 RIAEATELMKKML-HKGIDPTPVTYRTVIHRYCQMGKVDDLVAILEKM--ISRQKCRTIY 696

Query: 390 AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449
             VI+ LC   +L+EA      ++  ++  D     A+++G  + G    A      + +
Sbjct: 697 NQVIEKLCVLGKLEEADTLLGKVLRTASRSDAKTCYALMEGYLKKGVPLSAYKVACRMFN 756

Query: 450 SGVTPNI 456
             + P++
Sbjct: 757 RNLIPDV 763



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 89/353 (25%), Positives = 162/353 (45%), Gaps = 4/353 (1%)

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
           M++ L ++    G+ RV+ +M++RG+  +  +++ ++    + G    A ++L    + G
Sbjct: 213 MLEVLSKTKLCQGSRRVLVLMKRRGIYRTPEAFSRVMVSYSRAGQLRDALKVLTLMQRAG 272

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL 264
             P+       ++     + LEKA + L+ M     V      N  +R  C +    E +
Sbjct: 273 VEPNLLICNTTIDVFVRANRLEKALRFLERMQVVGIVPNVVTYNCMIRGYCDLHRVEEAI 332

Query: 265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 324
            +L  M    C PD ++  T++   CK  RI E   ++  M       PD VT+ T+I  
Sbjct: 333 ELLEDMHSKGCLPDKVSYYTIMGYLCKEKRIVEVRDLMKKMAKEHGLVPDQVTYNTLIHM 392

Query: 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 384
           L       EAL  L     ++G+    + Y+A++  L +  R+ EAK++ N M       
Sbjct: 393 LTKHDHADEALWFLKDAQ-EKGFRIDKLGYSAIVHALCKEGRMSEAKDLINEM---DCPP 448

Query: 385 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFL 444
           D  TY  V++G C   ++D+AK+    +    +  +   Y A++ G+CR+GK  EA   +
Sbjct: 449 DVVTYTAVVNGFCRLGEVDKAKKLLQVMHTHGHKPNTVSYTALLNGMCRTGKSLEAREMM 508

Query: 445 YELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
               +   +PN + Y+V++ G  +     EA  ++REM   G  P  V   +L
Sbjct: 509 NMSEEHWWSPNSITYSVIMHGLRREGKLSEACDVVREMVLKGFFPGPVEINLL 561



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 88/383 (22%), Positives = 162/383 (42%), Gaps = 80/383 (20%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R+ EA  L  +M      P+VV+YT +++G+CR GE+D A K+   M   G  PN
Sbjct: 428 LCKEGRMSEAKDLINEMDC---PPDVVTYTAVVNGFCRLGEVDKAKKLLQVMHTHGHKPN 484

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
           +++Y+ L+ G+ RT     A  +M      M EE   S N+  ++ ++  L REG ++E 
Sbjct: 485 TVSYTALLNGMCRTGKSLEAREMM-----NMSEEHWWSPNSITYSVIMHGLRREGKLSEA 539

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             +  +M              ++ SLCR GR H A + +     +G   ++V++ +++HG
Sbjct: 540 CDVVREMVLKGFFPGPVEINLLLQSLCRDGRTHEARKFMEECLNKGCAINVVNFTTVIHG 599

Query: 184 LC-----------------------------------KHGGCMRAYQLLEEGIQFGYLPS 208
            C                                   K G    A +L+++ +  G  P+
Sbjct: 600 FCQNDELDAALSVLDDMYLINKHADVFTYTTLVDTLGKKGRIAEATELMKKMLHKGIDPT 659

Query: 209 EHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLV 268
             TY+ ++   C    ++    +L+ M+S++   RT I N  +  LC++    E   +L 
Sbjct: 660 PVTYRTVIHRYCQMGKVDDLVAILEKMISRQKC-RT-IYNQVIEKLCVLGKLEEADTLLG 717

Query: 269 FMLQTQCQPDVITLNTVINGF-------------CKM----------------------G 293
            +L+T  + D  T   ++ G+             C+M                      G
Sbjct: 718 KVLRTASRSDAKTCYALMEGYLKKGVPLSAYKVACRMFNRNLIPDVKMCEKLSKRLVLKG 777

Query: 294 RIEEALKVLNDMVAGKFCAPDAV 316
           +++EA K++  +V     +P ++
Sbjct: 778 KVDEADKLMLRLVERGHISPQSL 800



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 105/233 (45%), Gaps = 9/233 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +  LC   R  EA K   +  ++G   NVV++TT+IHG+C+  E+D A  V D+M     
Sbjct: 562 LQSLCRDGRTHEARKFMEECLNKGCAINVVNFTTVIHGFCQNDELDAALSVLDDMYLINK 621

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             +  TY+ LV  + +   +  A  LM K+  +      +      +  ++   C+ G V
Sbjct: 622 HADVFTYTTLVDTLGKKGRIAEATELMKKMLHK-----GIDPTPVTYRTVIHRYCQMGKV 676

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVV-YVMRKRGLTPSLVSYNS 179
           +++  I E M   +     +    +I+ LC  G+   A  ++  V+R    + +   Y +
Sbjct: 677 DDLVAILEKMISRQKCRTIY--NQVIEKLCVLGKLEEADTLLGKVLRTASRSDAKTCY-A 733

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVL 232
           ++ G  K G  + AY++         +P     + L + L  +  +++A K++
Sbjct: 734 LMEGYLKKGVPLSAYKVACRMFNRNLIPDVKMCEKLSKRLVLKGKVDEADKLM 786


>gi|334186712|ref|NP_001190774.1| Pentatricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
 gi|223635614|sp|P0C8Q3.1|PP326_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g19890
 gi|332658842|gb|AEE84242.1| Pentatricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
          Length = 701

 Score =  168 bits (425), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 131/526 (24%), Positives = 221/526 (42%), Gaps = 119/526 (22%)

Query: 7   LSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLT 66
           + R+ EA  +  DM+++G  P+ ++   ++      G ++ A  VFDEM   GV+P+S +
Sbjct: 160 IGRLNEAVGMVMDMQNQGLTPSSITMNCVLEIAVELGLIEYAENVFDEMSVRGVVPDSSS 219

Query: 67  YSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRI 126
           Y ++V G  R                                        +G + E  R 
Sbjct: 220 YKLMVIGCFR----------------------------------------DGKIQEADRW 239

Query: 127 AEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKR---GLTPSLVSYNSIVHG 183
              M Q   + +   C  ++ +LC +G     +R ++  RK    G  P+L+++ S++ G
Sbjct: 240 LTGMIQRGFIPDNATCTLILTALCENGL---VNRAIWYFRKMIDLGFKPNLINFTSLIDG 296

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LCK G   +A+++LEE ++ G+ P+ +T+  L++GLC     EKA ++            
Sbjct: 297 LCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLF----------- 345

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                     L L+++ T              +P+V T  ++I G+CK  ++  A  + +
Sbjct: 346 ----------LKLVRSDTY-------------KPNVHTYTSMIGGYCKEDKLNRAEMLFS 382

Query: 304 DMV-AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
            M   G F  P+  T+TT+I G    G    A  L+  +M   G+ P I TYNA +  L 
Sbjct: 383 RMKEQGLF--PNVNTYTTLINGHCKAGSFGRAYELM-NLMGDEGFMPNIYTYNAAIDSLC 439

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN---------------------- 400
           +  R  EA E+ N     G+ AD  TY I+I   C+ N                      
Sbjct: 440 KKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQNDINQALAFFCRMNKTGFEADMR 499

Query: 401 -------------QLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYEL 447
                        ++ E++R +  +V    I     Y +MI   C+ G I  A+ + + +
Sbjct: 500 LNNILIAAFCRQKKMKESERLFQLVVSLGLIPTKETYTSMISCYCKEGDIDLALKYFHNM 559

Query: 448 VDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVT 493
              G  P+   Y  +I G CK SM  EA ++   M   GL+P  VT
Sbjct: 560 KRHGCVPDSFTYGSLISGLCKKSMVDEACKLYEAMIDRGLSPPEVT 605



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 114/455 (25%), Positives = 199/455 (43%), Gaps = 16/455 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +  LC    V  A   F  M   G  PN++++T+LI G C+ G +  A+++ +EM   G 
Sbjct: 259 LTALCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGW 318

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN  T++ L+ G+ +    E+A    F+L+ ++   +    N   + +++   C+E  +
Sbjct: 319 KPNVYTHTALIDGLCKRGWTEKA----FRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKL 374

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           N    +   M +            +I+  C++G    A  ++ +M   G  P++ +YN+ 
Sbjct: 375 NRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYELMNLMGDEGFMPNIYTYNAA 434

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +  LCK      AY+LL +    G      TY +L++  C ++D+ +A      M     
Sbjct: 435 IDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQNDINQALAFFCRMNKTGF 494

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
               R+ NI + A C  K   E   +   ++     P   T  ++I+ +CK G I+ ALK
Sbjct: 495 EADMRLNNILIAAFCRQKKMKESERLFQLVVSLGLIPTKETYTSMISCYCKEGDIDLALK 554

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
             ++M     C PD+ T+ ++I GL     + EA   LY+ M  RG SP  VT   V   
Sbjct: 555 YFHNM-KRHGCVPDSFTYGSLISGLCKKSMVDEACK-LYEAMIDRGLSPPEVT--RVTLA 610

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADST---TYAIVIDGLCESNQLDEAKRFWDDIVWPSN 417
               +R + A    N M+ +  +       T   ++  LC   ++  A  F+  ++   +
Sbjct: 611 YEYCKRNDSA----NAMILLEPLDKKLWIRTVRTLVRKLCSEKKVGVAALFFQKLLEKDS 666

Query: 418 IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGV 452
             D    AA       SGK +  V  L E +  GV
Sbjct: 667 SADRVTLAAFTTACSESGK-NNLVTDLTERISRGV 700



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 90/359 (25%), Positives = 158/359 (44%), Gaps = 48/359 (13%)

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
           M+ +    GR + A  +V  M+ +GLTPS ++ N ++    + G    A  + +E    G
Sbjct: 153 MLRNFSEIGRLNEAVGMVMDMQNQGLTPSSITMNCVLEIAVELGLIEYAENVFDEMSVRG 212

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL 264
            +P   +YK++V G   +  +++A + L  M+ +  +                       
Sbjct: 213 VVPDSSSYKLMVIGCFRDGKIQEADRWLTGMIQRGFI----------------------- 249

Query: 265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 324
                       PD  T   ++   C+ G +  A+     M+   F  P+ + FT++I G
Sbjct: 250 ------------PDNATCTLILTALCENGLVNRAIWYFRKMIDLGF-KPNLINFTSLIDG 296

Query: 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 384
           L   G I++A  +L + M + G+ P + T+ A++ GL +    E+A  +F     + +V 
Sbjct: 297 LCKKGSIKQAFEMLEE-MVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLF-----LKLVR 350

Query: 385 DST------TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIH 438
             T      TY  +I G C+ ++L+ A+  +  +       +   Y  +I G C++G   
Sbjct: 351 SDTYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFG 410

Query: 439 EAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            A   +  + D G  PNI  YN  ID  CK S   EAY++L +    GL  D VT+ IL
Sbjct: 411 RAYELMNLMGDEGFMPNIYTYNAAIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTIL 469



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 90/336 (26%), Positives = 145/336 (43%), Gaps = 26/336 (7%)

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQF-GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
           ++V  L    G M A       + F  +      Y V  + L    +L+KA +V++ ML 
Sbjct: 96  TVVASLASESGSMVALCFFYWAVGFEKFRHFMRLYLVTADSLLANGNLQKAHEVMRCML- 154

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
                         R    I    E + +++ M      P  IT+N V+    ++G IE 
Sbjct: 155 --------------RNFSEIGRLNEAVGMVMDMQNQGLTPSSITMNCVLEIAVELGLIEY 200

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           A  V ++M + +   PD+ ++  ++ G    G+IQEA   L   M QRG+ P   T   +
Sbjct: 201 AENVFDEM-SVRGVVPDSSSYKLMVIGCFRDGKIQEADRWLTG-MIQRGFIPDNATCTLI 258

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV---W 414
           L  L     V  A   F  M+ +G   +   +  +IDGLC+   + +A    +++V   W
Sbjct: 259 LTALCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGW 318

Query: 415 PSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGV-TPNIVCYNVVIDGACKLSMKR 473
             N+   Y + A+I GLC+ G   +A     +LV S    PN+  Y  +I G CK     
Sbjct: 319 KPNV---YTHTALIDGLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLN 375

Query: 474 EAYQILREMRKNGLNPDAVTWRILDKLHGNRGNDFG 509
            A  +   M++ GL P+  T+  L   H   G+ FG
Sbjct: 376 RAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGS-FG 410


>gi|326493766|dbj|BAJ85345.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 671

 Score =  168 bits (425), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 136/569 (23%), Positives = 247/569 (43%), Gaps = 82/569 (14%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYK---------- 50
           + +LC   R+ +A ++   +K+ G   + VS+ TL+ GYCR G +  A +          
Sbjct: 119 IKKLCAQRRLADAERVLDALKAAGAA-DPVSHNTLVAGYCRDGRLADAERLLAAAGLSGA 177

Query: 51  ---------------------VFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFK 89
                                    +    V P++ TY+ ++ G+   R  E A  LM +
Sbjct: 178 ANVVTYTTLINGYCRSGRLADALALIASMPVAPDTYTYNTVLMGLCGARQWEDAEALMAE 237

Query: 90  LWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQ----------GKSVNEE 139
           +            N   FA  + + C+ G ++   ++ + MPQ             VN  
Sbjct: 238 M-----VRNHCPPNEVTFATQIRAFCQNGLLDRAVQLLDRMPQYGCTPDVVIYSTLVNGF 292

Query: 140 FACGHMIDS----------------------LCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
              G + D+                      LC + R     +++  M ++   P+  ++
Sbjct: 293 SEQGRVDDAIELLNGMLCKPNTICYNAALKGLCIAQRWEDVGQLIVEMVRKDCLPNEATF 352

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
           + +   LC++G    A ++LE+  ++G  P    Y  L+     +  ++ A K+L  M  
Sbjct: 353 SMLTSCLCQNGLVDCAMEVLEQMHKYGCRPDAVIYNTLIYSFSEQGRVDDALKLLNSMPC 412

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
             DV      N  L+ LC  +   +   ++V ML+  C    +T N +I+  C+ GR+  
Sbjct: 413 SPDVISF---NAALKGLCRAERWDDAEELIVQMLREDCPLIEMTFNILIDSLCQNGRVNN 469

Query: 298 ALKVLNDMVAGKF-CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356
           A++V   M   K+ C PD VT++++I GL   G ++ A+  L+Q MP +   P I  YNA
Sbjct: 470 AIEVFEQM--PKYGCTPDIVTYSSLINGLSEQGLVESAIE-LFQSMPCK---PDIFGYNA 523

Query: 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 416
           VL+GL R  R E+A E+ + M       +  T+ I+I+ LC+   +D A   ++ +    
Sbjct: 524 VLKGLCRAARWEDAGELISNMARKDCPPNEITFNILINSLCQKGLVDRAIEVFEQMPKYG 583

Query: 417 NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAY 476
           +  D + Y A+I G    G++ +A   L  +      P+ V YN  + G C+    +EA 
Sbjct: 584 STPDIFTYNALINGFSEQGRLDDARRLLSTM---SCKPDAVSYNSALKGLCRAERWKEAE 640

Query: 477 QILREMRKNGLNPDAVTWRILDKLHGNRG 505
           +++ EM +    P+ VT++  ++L    G
Sbjct: 641 EVVAEMLRMKCPPNEVTFKYANRLFVPNG 669



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 98/392 (25%), Positives = 167/392 (42%), Gaps = 48/392 (12%)

Query: 141 ACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEG 200
           AC  +I  LC   R   A RV+  ++  G     VS+N++V G C+ G    A +LL   
Sbjct: 114 ACNILIKKLCAQRRLADAERVLDALKAAGAA-DPVSHNTLVAGYCRDGRLADAERLLAAA 172

Query: 201 IQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNP 260
              G   +  TY  L+ G C    L  A  ++  M    D   T   N  L  LC  +  
Sbjct: 173 GLSGAA-NVVTYTTLINGYCRSGRLADALALIASMPVAPD---TYTYNTVLMGLCGARQW 228

Query: 261 TELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTT 320
            +   ++  M++  C P+ +T  T I  FC+ G ++ A+++L D +    C PD V ++T
Sbjct: 229 EDAEALMAEMVRNHCPPNEVTFATQIRAFCQNGLLDRAVQLL-DRMPQYGCTPDVVIYST 287

Query: 321 IIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEE----------- 369
           ++ G    GR+ +A+ LL  ++      P  + YNA L+GL   +R E+           
Sbjct: 288 LVNGFSEQGRVDDAIELLNGML----CKPNTICYNAALKGLCIAQRWEDVGQLIVEMVRK 343

Query: 370 ------------------------AKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA 405
                                   A EV   M   G   D+  Y  +I    E  ++D+A
Sbjct: 344 DCLPNEATFSMLTSCLCQNGLVDCAMEVLEQMHKYGCRPDAVIYNTLIYSFSEQGRVDDA 403

Query: 406 KRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDG 465
            +  + +    ++     + A +KGLCR+ +  +A   + +++        + +N++ID 
Sbjct: 404 LKLLNSMPCSPDV---ISFNAALKGLCRAERWDDAEELIVQMLREDCPLIEMTFNILIDS 460

Query: 466 ACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            C+      A ++  +M K G  PD VT+  L
Sbjct: 461 LCQNGRVNNAIEVFEQMPKYGCTPDIVTYSSL 492


>gi|297809453|ref|XP_002872610.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318447|gb|EFH48869.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 575

 Score =  168 bits (425), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 113/470 (24%), Positives = 217/470 (46%), Gaps = 12/470 (2%)

Query: 32  YTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLW 91
           Y  +I+ Y ++  +D +   F+EM   G +P S  ++ L+  V+ +          F  W
Sbjct: 97  YEVIINAYVQSQSLDSSIYYFNEMVDKGFVPGSNCFNNLLTFVVGSSS--------FNQW 148

Query: 92  ERMKEEEDLSV--NNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSL 149
                E  + V  +  +F  ++   C  G + + F +  ++ +            +ID  
Sbjct: 149 WCFFNESKIKVVLDVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGC 208

Query: 150 CRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSE 209
           C+ G    A  + + M K GL  +  +Y  ++HGL K+G   + +++ E+  + G  P+ 
Sbjct: 209 CKKGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNL 268

Query: 210 HTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVF 269
           +TY  ++  LC +   + A KV   M  +         N  +  LC      E   V+  
Sbjct: 269 YTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQ 328

Query: 270 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG 329
           M      P++IT NT+I+GFC +G++ +AL +  D+   +  +P  VT+  ++ G    G
Sbjct: 329 MKSYVINPNLITYNTLIDGFCSVGKLGKALSLCRDL-KSRGLSPSLVTYNVLVSGFCRKG 387

Query: 330 RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTY 389
               A  ++ + M +RG  P  VTY  ++    R   +E A ++ + M  +G+V D  TY
Sbjct: 388 DTSGAAKMVKE-MEERGIKPSKVTYTILIDTFARSDNMETAIQLRSSMEELGLVPDVHTY 446

Query: 390 AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449
           +++I G C   Q++EA R +  +V      +  +Y  MI G C+ G  + A+    ++ +
Sbjct: 447 SVLIHGFCIKGQMNEASRLFKSMVEKMLEPNEVIYNTMILGYCKEGSSYRALRLFRDMEE 506

Query: 450 SGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
             + PN+  Y+ +I   CK    +EA  ++ +M  +G++P      ++ +
Sbjct: 507 KELAPNVASYSYLIRVLCKERKLKEAEDLVEKMIDSGIDPSDTICNLISR 556



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 109/388 (28%), Positives = 202/388 (52%), Gaps = 17/388 (4%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C    + ++  L  +++  G  PNVV YTTLI G C+ GE++ A  +F EM   G++ N 
Sbjct: 174 CEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKFGLVANE 233

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
            TY+VL+ G+ +    ++     F+++E+M +E  +  N   +  +++ LC++G   + F
Sbjct: 234 WTYTVLIHGLFKNGIKKQG----FEMYEKM-QEHGVFPNLYTYNCVMNQLCKDGRTKDAF 288

Query: 125 RIAEDM-PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           ++ ++M  +G S N       +I  LCR  + + A++V+  M+   + P+L++YN+++ G
Sbjct: 289 KVFDEMRERGVSCN-IVTYNTLIGGLCREMKANEANKVMDQMKSYVINPNLITYNTLIDG 347

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM----LSKK 239
            C  G   +A  L  +    G  PS  TY VLV G C + D   A K+++ M    +   
Sbjct: 348 FCSVGKLGKALSLCRDLKSRGLSPSLVTYNVLVSGFCRKGDTSGAAKMVKEMEERGIKPS 407

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
            V  T + + + R+     N    + +   M +    PDV T + +I+GFC  G++ EA 
Sbjct: 408 KVTYTILIDTFARS----DNMETAIQLRSSMEELGLVPDVHTYSVLIHGFCIKGQMNEAS 463

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           ++   MV  K   P+ V + T+I G    G    AL  L++ M ++  +P + +Y+ ++R
Sbjct: 464 RLFKSMVE-KMLEPNEVIYNTMILGYCKEGSSYRALR-LFRDMEEKELAPNVASYSYLIR 521

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADST 387
            L + R+++EA+++   M+  G+    T
Sbjct: 522 VLCKERKLKEAEDLVEKMIDSGIDPSDT 549



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 105/446 (23%), Positives = 203/446 (45%), Gaps = 42/446 (9%)

Query: 17  FFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLR 76
           FF+      V +V S+  +I G C  GE++ ++ +  E+R  G  PN + Y+ L+ G  +
Sbjct: 151 FFNESKIKVVLDVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCK 210

Query: 77  TRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSV 136
             ++E+A  L F++ +       L  N   +  L+  L + G   + F + E M +    
Sbjct: 211 KGEIEKAKDLFFEMGKF-----GLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVF 265

Query: 137 NEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQL 196
              +    +++ LC+ GR   A +V   MR+RG++ ++V+YN+++ GLC+      A ++
Sbjct: 266 PNLYTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKV 325

Query: 197 LEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCL 256
           +++   +   P+  TY  L++G C    L KA  + + + S              R L  
Sbjct: 326 MDQMKSYVINPNLITYNTLIDGFCSVGKLGKALSLCRDLKS--------------RGL-- 369

Query: 257 IKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAV 316
                               P ++T N +++GFC+ G    A K++ +M   +   P  V
Sbjct: 370 -------------------SPSLVTYNVLVSGFCRKGDTSGAAKMVKEM-EERGIKPSKV 409

Query: 317 TFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNC 376
           T+T +I        ++ A+  L   M + G  P + TY+ ++ G     ++ EA  +F  
Sbjct: 410 TYTILIDTFARSDNMETAIQ-LRSSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKS 468

Query: 377 MLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGK 436
           M+   +  +   Y  +I G C+      A R + D+       +   Y+ +I+ LC+  K
Sbjct: 469 MVEKMLEPNEVIYNTMILGYCKEGSSYRALRLFRDMEEKELAPNVASYSYLIRVLCKERK 528

Query: 437 IHEAVHFLYELVDSGVTPNIVCYNVV 462
           + EA   + +++DSG+ P+    N++
Sbjct: 529 LKEAEDLVEKMIDSGIDPSDTICNLI 554



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 123/250 (49%), Gaps = 5/250 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   +  EA+K+   MKS    PN+++Y TLI G+C  G++  A  +  +++  G+ P+
Sbjct: 313 LCREMKANEANKVMDQMKSYVINPNLITYNTLIDGFCSVGKLGKALSLCRDLKSRGLSPS 372

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY+VLV G  R  D   A     K+ + M EE  +  +   +  L+D+  R   +   
Sbjct: 373 LVTYNVLVSGFCRKGDTSGAA----KMVKEM-EERGIKPSKVTYTILIDTFARSDNMETA 427

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            ++   M +   V +      +I   C  G+ + ASR+   M ++ L P+ V YN+++ G
Sbjct: 428 IQLRSSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKMLEPNEVIYNTMILG 487

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK G   RA +L  +  +    P+  +Y  L+  LC E  L++A  +++ M+       
Sbjct: 488 YCKEGSSYRALRLFRDMEEKELAPNVASYSYLIRVLCKERKLKEAEDLVEKMIDSGIDPS 547

Query: 244 TRICNIYLRA 253
             ICN+  RA
Sbjct: 548 DTICNLISRA 557



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 121/232 (52%), Gaps = 2/232 (0%)

Query: 278 DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNL 337
           DV +   VI G C+ G IE++  +L ++    F +P+ V +TT+I G    G I++A +L
Sbjct: 162 DVYSFGIVIKGCCEAGEIEKSFDLLVELREFGF-SPNVVIYTTLIDGCCKKGEIEKAKDL 220

Query: 338 LYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLC 397
            ++ M + G      TY  ++ GLF+    ++  E++  M   GV  +  TY  V++ LC
Sbjct: 221 FFE-MGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLYTYNCVMNQLC 279

Query: 398 ESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIV 457
           +  +  +A + +D++       +   Y  +I GLCR  K +EA   + ++    + PN++
Sbjct: 280 KDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSYVINPNLI 339

Query: 458 CYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGNDFG 509
            YN +IDG C +    +A  + R+++  GL+P  VT+ +L      +G+  G
Sbjct: 340 TYNTLIDGFCSVGKLGKALSLCRDLKSRGLSPSLVTYNVLVSGFCRKGDTSG 391


>gi|413934354|gb|AFW68905.1| hypothetical protein ZEAMMB73_510949 [Zea mays]
          Length = 845

 Score =  168 bits (425), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 138/498 (27%), Positives = 225/498 (45%), Gaps = 28/498 (5%)

Query: 9   RVGE---AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSL 65
           R GE   A  +F +M + G  P++ ++  ++ G+C  G + VA  +   M   G+ P+  
Sbjct: 195 RSGEVRAAWNVFEEMTAEGPRPSLATFNAMLLGFCHRGMVRVASGLLGIMGKSGIAPDVC 254

Query: 66  TYSVLVRG---VLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           +Y++L++G      +RD        FK++E M            +  LVD LC EG + E
Sbjct: 255 SYNILIKGHCVFGWSRDA-------FKMFEGM-HRSGCEPTVVTYNILVDVLCHEGRMPE 306

Query: 123 VFRIAEDMPQ-GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
             R+ ++M Q G  VN       +ID   +SG+   AS     M+ RGL P   ++N I 
Sbjct: 307 ARRLFDEMAQVGIQVNT-ITFNVLIDGYAKSGQMDQASAAYREMQARGLVPDSCTFNIIA 365

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
               K G    A QL+ +   F    S     +LV  LC +  L+ A ++L   + +   
Sbjct: 366 ARAHKFG---YAAQLVHDHDMFSSHMSADGLDMLVCRLCWDHRLDDAWELLLGAIEQGVP 422

Query: 242 DRTRICNIYLRALC---LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
            R    N  + A     L +  +EL  +   M +    P   T N +I G C  GR++EA
Sbjct: 423 LRVTGFNALIAAYSKEGLHEEASELYRI---MNKLGLAPSSSTFNYLIMGLCNQGRLDEA 479

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
             +L  MV+  +C   + +FT  +      G    AL   +  M   G     + ++A +
Sbjct: 480 QLLLEHMVSKGYCL--STSFTICLDAYFRDGNAVGALKC-WDDMGNIGLQTDFIAFSAYI 536

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
            GL RL  V EA + F  M   G+V ++ TY  +I  LC++  + EA +   ++     +
Sbjct: 537 NGLCRLDCVNEAYQAFAEMTSRGIVPNNITYNSIISALCKAGNMTEALKLVQNMRQSGLV 596

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI 478
            D Y    +I GLCR GK+    + L ++  +G+TP+ V YN +I+  C+      A   
Sbjct: 597 PDIYTSNILIDGLCREGKLKMVDNLLLDMCSNGLTPDTVTYNTIINAYCRAQDMNSAMNF 656

Query: 479 LREMRKNGLNPDAVTWRI 496
           + +M   G  PD  T+ I
Sbjct: 657 MNKMLVAGCEPDIFTYNI 674



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 129/492 (26%), Positives = 222/492 (45%), Gaps = 14/492 (2%)

Query: 6   GLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSL 65
           G SR  +A K+F  M   G  P VV+Y  L+   C  G M  A ++FDEM   G+  N++
Sbjct: 267 GWSR--DAFKMFEGMHRSGCEPTVVTYNILVDVLCHEGRMPEARRLFDEMAQVGIQVNTI 324

Query: 66  TYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFR 125
           T++VL+ G  ++  +++A+        R  +   L  ++  F  +     + GY  +   
Sbjct: 325 TFNVLIDGYAKSGQMDQASAAY-----REMQARGLVPDSCTFNIIAARAHKFGYAAQ--- 376

Query: 126 IAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLC 185
           +  D     S         ++  LC   R   A  ++    ++G+   +  +N+++    
Sbjct: 377 LVHDHDMFSSHMSADGLDMLVCRLCWDHRLDDAWELLLGAIEQGVPLRVTGFNALIAAYS 436

Query: 186 KHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTR 245
           K G    A +L     + G  PS  T+  L+ GLC +  L++A+ +L+ M+SK     T 
Sbjct: 437 KEGLHEEASELYRIMNKLGLAPSSSTFNYLIMGLCNQGRLDEAQLLLEHMVSKGYCLSTS 496

Query: 246 ICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM 305
              I L A     N    L     M     Q D I  +  ING C++  + EA +   +M
Sbjct: 497 F-TICLDAYFRDGNAVGALKCWDDMGNIGLQTDFIAFSAYINGLCRLDCVNEAYQAFAEM 555

Query: 306 VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLR 365
            + +   P+ +T+ +II  L   G + EAL L+ Q M Q G  P I T N ++ GL R  
Sbjct: 556 TS-RGIVPNNITYNSIISALCKAGNMTEALKLV-QNMRQSGLVPDIYTSNILIDGLCREG 613

Query: 366 RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYA 425
           +++    +   M   G+  D+ TY  +I+  C +  ++ A  F + ++      D + Y 
Sbjct: 614 KLKMVDNLLLDMCSNGLTPDTVTYNTIINAYCRAQDMNSAMNFMNKMLVAGCEPDIFTYN 673

Query: 426 AMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN 485
             +  LCR+  +++A   L ELV    +PN V YN ++DG C   + R A  +   + K 
Sbjct: 674 IWMHSLCRNHMLNQAGKLLDELVAVDCSPNSVTYNTLMDGICSDVLDR-AMILTGRLIKM 732

Query: 486 GLNPDAVTWRIL 497
              P+ +T  + 
Sbjct: 733 AFKPNTITLNVF 744



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 126/501 (25%), Positives = 221/501 (44%), Gaps = 18/501 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   R+ EA +LF +M   G   N +++  LI GY ++G+MD A   + EM+  G+
Sbjct: 295 VDVLCHEGRMPEARRLFDEMAQVGIQVNTITFNVLIDGYAKSGQMDQASAAYREMQARGL 354

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAA---FANLVDSLCRE 117
           +P+S T++++            A    F    ++  + D+  ++ +      LV  LC +
Sbjct: 355 VPDSCTFNIIA-----------ARAHKFGYAAQLVHDHDMFSSHMSADGLDMLVCRLCWD 403

Query: 118 GYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
             +++ + +     +            +I +  + G +  AS +  +M K GL PS  ++
Sbjct: 404 HRLDDAWELLLGAIEQGVPLRVTGFNALIAAYSKEGLHEEASELYRIMNKLGLAPSSSTF 463

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
           N ++ GLC  G    A  LLE  +  GY  S  ++ + ++    + +   A K    M +
Sbjct: 464 NYLIMGLCNQGRLDEAQLLLEHMVSKGYCLST-SFTICLDAYFRDGNAVGALKCWDDMGN 522

Query: 238 KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
                     + Y+  LC +    E       M      P+ IT N++I+  CK G + E
Sbjct: 523 IGLQTDFIAFSAYINGLCRLDCVNEAYQAFAEMTSRGIVPNNITYNSIISALCKAGNMTE 582

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           ALK++ +M       PD  T   +I GL   G+++   NLL   M   G +P  VTYN +
Sbjct: 583 ALKLVQNMRQSGL-VPDIYTSNILIDGLCREGKLKMVDNLLLD-MCSNGLTPDTVTYNTI 640

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 417
           +    R + +  A    N ML  G   D  TY I +  LC ++ L++A +  D++V    
Sbjct: 641 INAYCRAQDMNSAMNFMNKMLVAGCEPDIFTYNIWMHSLCRNHMLNQAGKLLDELVAVDC 700

Query: 418 IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQ 477
             ++  Y  ++ G+C S  +  A+     L+     PN +  NV +   CK      A  
Sbjct: 701 SPNSVTYNTLMDGIC-SDVLDRAMILTGRLIKMAFKPNTITLNVFLSHFCKQGFGNRALM 759

Query: 478 ILREMRKNGLNPDAVTWRILD 498
              ++R++    D  T  I+D
Sbjct: 760 WAEKLREDSFVFDGATRNIID 780



 Score = 45.1 bits (105), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 37/69 (53%)

Query: 433 RSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAV 492
           RSG++  A +   E+   G  P++  +N ++ G C   M R A  +L  M K+G+ PD  
Sbjct: 195 RSGEVRAAWNVFEEMTAEGPRPSLATFNAMLLGFCHRGMVRVASGLLGIMGKSGIAPDVC 254

Query: 493 TWRILDKLH 501
           ++ IL K H
Sbjct: 255 SYNILIKGH 263


>gi|356518209|ref|XP_003527773.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Glycine max]
          Length = 1113

 Score =  167 bits (424), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 128/492 (26%), Positives = 234/492 (47%), Gaps = 14/492 (2%)

Query: 15  KLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGV 74
           + + +M++ G+ P+VV+YT L+   C++G++D A+ + D MR  G++PN  TY+ L+ G+
Sbjct: 353 RFWSEMEADGYAPDVVTYTILVEALCKSGKVDQAFDMLDVMRVRGIVPNLHTYNTLISGL 412

Query: 75  LRTRDVERANVLMFKLWERMKEEEDLSVNNAAFAN--LVDSLCREGYVNEVFRIAEDMPQ 132
           L  R ++ A     +L+  M   E L V   A++    +D   + G   +     E M +
Sbjct: 413 LNLRRLDEA----LELFNNM---ESLGVAPTAYSYVLFIDYYGKLGDPEKALDTFEKMKK 465

Query: 133 GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMR 192
              +    AC   + SL   GR   A  +   +   GL+P  V+YN ++    K G   +
Sbjct: 466 RGIMPSIAACNASLYSLAEMGRIREAKDIFNDIHNCGLSPDSVTYNMMMKCYSKAGQIDK 525

Query: 193 AYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLR 252
           A +LL E +  G  P       L++ L     +++A ++   +   K        NI + 
Sbjct: 526 ATKLLTEMLSEGCEPDIIVVNSLIDTLYKAGRVDEAWQMFGRLKDLKLAPTVVTYNILIT 585

Query: 253 ALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCA 312
            L       + L++   M ++ C P+ +T N +++  CK   ++ ALK+   M     C+
Sbjct: 586 GLGKEGKLLKALDLFGSMKESGCPPNTVTFNALLDCLCKNDAVDLALKMFCRMTIMN-CS 644

Query: 313 PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEA-K 371
           PD +T+ TII+GL+  GR   A    +Q+  ++  SP  VT   +L G+ +  RVE+A K
Sbjct: 645 PDVLTYNTIIYGLIKEGRAGYAFWFYHQM--KKFLSPDHVTLYTLLPGVVKDGRVEDAIK 702

Query: 372 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 431
            V   +   G+   +  +  +++ +    +++EA  F + +V  S   D+ +   +I+ L
Sbjct: 703 IVMEFVHQSGLQTSNQVWGELMECILIEAEIEEAISFAEGLVCNSICQDDNLILPLIRVL 762

Query: 432 CRSGKIHEAVHFLYELVDS-GVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD 490
           C+  K  +A     +   S G  P    YN ++DG    ++   A ++  EM+  G  P+
Sbjct: 763 CKQKKALDAKKLFDKFTKSLGTHPTPESYNCLMDGLLGCNITEAALKLFVEMKNAGCCPN 822

Query: 491 AVTWRILDKLHG 502
             T+ +L   HG
Sbjct: 823 IFTYNLLLDAHG 834



 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 128/513 (24%), Positives = 239/513 (46%), Gaps = 23/513 (4%)

Query: 4    LCGLSRVGE---AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
            + GL + G+   A  LF  MK  G  PN V++  L+   C+   +D+A K+F  M     
Sbjct: 584  ITGLGKEGKLLKALDLFGSMKESGCPPNTVTFNALLDCLCKNDAVDLALKMFCRMTIMNC 643

Query: 61   LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             P+ LTY+ ++ G+++     RA    +  W   + ++ LS ++     L+  + ++G V
Sbjct: 644  SPDVLTYNTIIYGLIKEG---RAG---YAFWFYHQMKKFLSPDHVTLYTLLPGVVKDGRV 697

Query: 121  NEVFRIA-EDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN- 178
             +  +I  E + Q          G +++ +        A     +    GL  + +  + 
Sbjct: 698  EDAIKIVMEFVHQSGLQTSNQVWGELMECILIEAEIEEA-----ISFAEGLVCNSICQDD 752

Query: 179  ----SIVHGLCKHGGCMRAYQLLEEGIQ-FGYLPSEHTYKVLVEGLCGESDLEKARKVLQ 233
                 ++  LCK    + A +L ++  +  G  P+  +Y  L++GL G +  E A K+  
Sbjct: 753  NLILPLIRVLCKQKKALDAKKLFDKFTKSLGTHPTPESYNCLMDGLLGCNITEAALKLFV 812

Query: 234  FMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMG 293
             M +          N+ L A    K   EL  +   ML   C+P++IT N +I+   K  
Sbjct: 813  EMKNAGCCPNIFTYNLLLDAHGKSKRIDELFELYNEMLCRGCKPNIITHNIIISALVKSN 872

Query: 294  RIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVT 353
             I +AL +  ++++G F +P   T+  +I GLL  GR +EA+ + ++ MP     P    
Sbjct: 873  SINKALDLYYEIISGDF-SPTPCTYGPLIGGLLKAGRSEEAMKI-FEEMPDYQCKPNCAI 930

Query: 354  YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413
            YN ++ G  +   V  A ++F  M+  G+  D  +Y I+++ L  + ++D+A  +++++ 
Sbjct: 931  YNILINGFGKAGNVNIACDLFKRMIKEGIRPDLKSYTILVECLFMTGRVDDAVHYFEELK 990

Query: 414  WPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKR 473
                  D   Y  MI GL +S ++ EA+    E+ + G++P +  YN +I       M  
Sbjct: 991  LTGLDPDTVSYNLMINGLGKSRRLEEALSLFSEMKNRGISPELYTYNALILHFGNAGMVD 1050

Query: 474  EAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
            +A ++  E++  GL P+  T+  L + H   GN
Sbjct: 1051 QAGKMFEELQFMGLEPNVFTYNALIRGHSKSGN 1083



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 136/501 (27%), Positives = 226/501 (45%), Gaps = 57/501 (11%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           M+  G V N  SY  LI+   + G    A KV+  M   G+ P+  TYS L+  + R RD
Sbjct: 183 MRQAGFVLNAYSYNGLIYFLLQPGFCKEALKVYKRMISEGLKPSMKTYSALMVALGRRRD 242

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
                  +  L E M E   L  N   +   +  L R G +++ + I + M       E+
Sbjct: 243 TGT----IMDLLEEM-ETLGLRPNIYTYTICIRVLGRAGRIDDAYGILKTM-------ED 290

Query: 140 FACGH-------MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMR 192
             CG        +ID+LC +G+   A  +   MR     P LV+Y +++     +G    
Sbjct: 291 EGCGPDVVTYTVLIDALCAAGKLDKAKELYTKMRASSHKPDLVTYITLMSKFGNYGDLET 350

Query: 193 AYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLR 252
             +   E    GY P   TY +LVE LC    +++A  +L       DV R R       
Sbjct: 351 VKRFWSEMEADGYAPDVVTYTILVEALCKSGKVDQAFDML-------DVMRVR------- 396

Query: 253 ALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCA 312
                                   P++ T NT+I+G   + R++EAL++ N+M +    A
Sbjct: 397 ---------------------GIVPNLHTYNTLISGLLNLRRLDEALELFNNMESLG-VA 434

Query: 313 PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKE 372
           P A ++   I     +G  ++AL+  ++ M +RG  P I   NA L  L  + R+ EAK+
Sbjct: 435 PTAYSYVLFIDYYGKLGDPEKALDT-FEKMKKRGIMPSIAACNASLYSLAEMGRIREAKD 493

Query: 373 VFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLC 432
           +FN +   G+  DS TY +++    ++ Q+D+A +   +++      D  V  ++I  L 
Sbjct: 494 IFNDIHNCGLSPDSVTYNMMMKCYSKAGQIDKATKLLTEMLSEGCEPDIIVVNSLIDTLY 553

Query: 433 RSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAV 492
           ++G++ EA      L D  + P +V YN++I G  K     +A  +   M+++G  P+ V
Sbjct: 554 KAGRVDEAWQMFGRLKDLKLAPTVVTYNILITGLGKEGKLLKALDLFGSMKESGCPPNTV 613

Query: 493 TWR-ILDKLHGNRGNDFGLRI 512
           T+  +LD L  N   D  L++
Sbjct: 614 TFNALLDCLCKNDAVDLALKM 634



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 118/486 (24%), Positives = 227/486 (46%), Gaps = 9/486 (1%)

Query: 10  VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSV 69
            G    L  +M++ G  PN+ +YT  I    R G +D AY +   M   G  P+ +TY+V
Sbjct: 243 TGTIMDLLEEMETLGLRPNIYTYTICIRVLGRAGRIDDAYGILKTMEDEGCGPDVVTYTV 302

Query: 70  LVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAED 129
           L+  +     +++A  L  K+      + DL      +  L+      G +  V R   +
Sbjct: 303 LIDALCAAGKLDKAKELYTKM-RASSHKPDL----VTYITLMSKFGNYGDLETVKRFWSE 357

Query: 130 MPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG 189
           M       +      ++++LC+SG+   A  ++ VMR RG+ P+L +YN+++ GL     
Sbjct: 358 MEADGYAPDVVTYTILVEALCKSGKVDQAFDMLDVMRVRGIVPNLHTYNTLISGLLNLRR 417

Query: 190 CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNI 249
              A +L       G  P+ ++Y + ++      D EKA    + M  +  +     CN 
Sbjct: 418 LDEALELFNNMESLGVAPTAYSYVLFIDYYGKLGDPEKALDTFEKMKKRGIMPSIAACNA 477

Query: 250 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK 309
            L +L  +    E  ++   +      PD +T N ++  + K G+I++A K+L +M++ +
Sbjct: 478 SLYSLAEMGRIREAKDIFNDIHNCGLSPDSVTYNMMMKCYSKAGQIDKATKLLTEMLS-E 536

Query: 310 FCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEE 369
            C PD +   ++I  L   GR+ EA  +  ++   +  +P +VTYN ++ GL +  ++ +
Sbjct: 537 GCEPDIIVVNSLIDTLYKAGRVDEAWQMFGRLKDLK-LAPTVVTYNILITGLGKEGKLLK 595

Query: 370 AKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIK 429
           A ++F  M   G   ++ T+  ++D LC+++ +D A + +  +   +   D   Y  +I 
Sbjct: 596 ALDLFGSMKESGCPPNTVTFNALLDCLCKNDAVDLALKMFCRMTIMNCSPDVLTYNTIIY 655

Query: 430 GLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE-MRKNGLN 488
           GL + G+   A  F Y  +   ++P+ V    ++ G  K     +A +I+ E + ++GL 
Sbjct: 656 GLIKEGRAGYAFWF-YHQMKKFLSPDHVTLYTLLPGVVKDGRVEDAIKIVMEFVHQSGLQ 714

Query: 489 PDAVTW 494
                W
Sbjct: 715 TSNQVW 720



 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 113/486 (23%), Positives = 219/486 (45%), Gaps = 8/486 (1%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           EA K++  M S G  P++ +Y+ L+    R  +      + +EM   G+ PN  TY++ +
Sbjct: 210 EALKVYKRMISEGLKPSMKTYSALMVALGRRRDTGTIMDLLEEMETLGLRPNIYTYTICI 269

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP 131
           R + R   ++ A  ++     +  E+E    +   +  L+D+LC  G +++   +   M 
Sbjct: 270 RVLGRAGRIDDAYGIL-----KTMEDEGCGPDVVTYTVLIDALCAAGKLDKAKELYTKMR 324

Query: 132 QGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCM 191
                 +      ++      G      R    M   G  P +V+Y  +V  LCK G   
Sbjct: 325 ASSHKPDLVTYITLMSKFGNYGDLETVKRFWSEMEADGYAPDVVTYTILVEALCKSGKVD 384

Query: 192 RAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYL 251
           +A+ +L+     G +P+ HTY  L+ GL     L++A ++   M S           +++
Sbjct: 385 QAFDMLDVMRVRGIVPNLHTYNTLISGLLNLRRLDEALELFNNMESLGVAPTAYSYVLFI 444

Query: 252 RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC 311
                + +P + L+    M +    P +   N  +    +MGRI EA  + ND +     
Sbjct: 445 DYYGKLGDPEKALDTFEKMKKRGIMPSIAACNASLYSLAEMGRIREAKDIFND-IHNCGL 503

Query: 312 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK 371
           +PD+VT+  ++      G+I +A  LL +++ + G  P I+  N+++  L++  RV+EA 
Sbjct: 504 SPDSVTYNMMMKCYSKAGQIDKATKLLTEMLSE-GCEPDIIVVNSLIDTLYKAGRVDEAW 562

Query: 372 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 431
           ++F  +  + +     TY I+I GL +  +L +A   +  +       +   + A++  L
Sbjct: 563 QMFGRLKDLKLAPTVVTYNILITGLGKEGKLLKALDLFGSMKESGCPPNTVTFNALLDCL 622

Query: 432 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 491
           C++  +  A+     +     +P+++ YN +I G  K      A+    +M+K  L+PD 
Sbjct: 623 CKNDAVDLALKMFCRMTIMNCSPDVLTYNTIIYGLIKEGRAGYAFWFYHQMKKF-LSPDH 681

Query: 492 VTWRIL 497
           VT   L
Sbjct: 682 VTLYTL 687



 Score =  151 bits (381), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 123/498 (24%), Positives = 225/498 (45%), Gaps = 8/498 (1%)

Query: 1    MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
            +D LC    V  A K+F  M      P+V++Y T+I+G  + G    A+  + +M+   +
Sbjct: 619  LDCLCKNDAVDLALKMFCRMTIMNCSPDVLTYNTIIYGLIKEGRAGYAFWFYHQMKKF-L 677

Query: 61   LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             P+ +T   L+ GV++   VE A     K+      +  L  +N  +  L++ +  E  +
Sbjct: 678  SPDHVTLYTLLPGVVKDGRVEDA----IKIVMEFVHQSGLQTSNQVWGELMECILIEAEI 733

Query: 121  NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKR-GLTPSLVSYNS 179
             E    AE +       ++     +I  LC+  +   A ++     K  G  P+  SYN 
Sbjct: 734  EEAISFAEGLVCNSICQDDNLILPLIRVLCKQKKALDAKKLFDKFTKSLGTHPTPESYNC 793

Query: 180  IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
            ++ GL        A +L  E    G  P+  TY +L++       +++  ++   ML + 
Sbjct: 794  LMDGLLGCNITEAALKLFVEMKNAGCCPNIFTYNLLLDAHGKSKRIDELFELYNEMLCRG 853

Query: 240  DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                    NI + AL    +  + L++   ++     P   T   +I G  K GR EEA+
Sbjct: 854  CKPNIITHNIIISALVKSNSINKALDLYYEIISGDFSPTPCTYGPLIGGLLKAGRSEEAM 913

Query: 300  KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
            K+  +M   + C P+   +  +I G    G +  A +L ++ M + G  P + +Y  ++ 
Sbjct: 914  KIFEEMPDYQ-CKPNCAIYNILINGFGKAGNVNIACDL-FKRMIKEGIRPDLKSYTILVE 971

Query: 360  GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
             LF   RV++A   F  +   G+  D+ +Y ++I+GL +S +L+EA   + ++       
Sbjct: 972  CLFMTGRVDDAVHYFEELKLTGLDPDTVSYNLMINGLGKSRRLEEALSLFSEMKNRGISP 1031

Query: 420  DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
            + Y Y A+I     +G + +A     EL   G+ PN+  YN +I G  K   K  A+ + 
Sbjct: 1032 ELYTYNALILHFGNAGMVDQAGKMFEELQFMGLEPNVFTYNALIRGHSKSGNKDRAFSVF 1091

Query: 480  REMRKNGLNPDAVTWRIL 497
            ++M   G +P+A T+  L
Sbjct: 1092 KKMMIVGCSPNAGTFAQL 1109



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 111/447 (24%), Positives = 198/447 (44%), Gaps = 37/447 (8%)

Query: 94  MKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSG 153
           + +++ ++ N   +  +  +L  +G + +       M Q   V   ++   +I  L + G
Sbjct: 147 LMQKQVINRNPNTYLTIFKALSIKGGIRQAPFALGKMRQAGFVLNAYSYNGLIYFLLQPG 206

Query: 154 RNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYK 213
               A +V   M   GL PS+ +Y++++  L +         LLEE    G  P+ +TY 
Sbjct: 207 FCKEALKVYKRMISEGLKPSMKTYSALMVALGRRRDTGTIMDLLEEMETLGLRPNIYTYT 266

Query: 214 VLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQT 273
           + +  L     ++ A  +L+ M  +          + + ALC      +   +   M  +
Sbjct: 267 ICIRVLGRAGRIDDAYGILKTMEDEGCGPDVVTYTVLIDALCAAGKLDKAKELYTKMRAS 326

Query: 274 QCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQE 333
             +PD++T  T+++ F   G +E   +  ++M A  + APD VT+T ++  L   G++ +
Sbjct: 327 SHKPDLVTYITLMSKFGNYGDLETVKRFWSEMEADGY-APDVVTYTILVEALCKSGKVDQ 385

Query: 334 ALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVI 393
           A ++L  VM  RG  P + TYN ++ GL  LRR++EA E+FN M  +GV   + +Y + I
Sbjct: 386 AFDML-DVMRVRGIVPNLHTYNTLISGLLNLRRLDEALELFNNMESLGVAPTAYSYVLFI 444

Query: 394 D-----------------------------------GLCESNQLDEAKRFWDDIVWPSNI 418
           D                                    L E  ++ EAK  ++DI      
Sbjct: 445 DYYGKLGDPEKALDTFEKMKKRGIMPSIAACNASLYSLAEMGRIREAKDIFNDIHNCGLS 504

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI 478
            D+  Y  M+K   ++G+I +A   L E++  G  P+I+  N +ID   K     EA+Q+
Sbjct: 505 PDSVTYNMMMKCYSKAGQIDKATKLLTEMLSEGCEPDIIVVNSLIDTLYKAGRVDEAWQM 564

Query: 479 LREMRKNGLNPDAVTWRILDKLHGNRG 505
              ++   L P  VT+ IL    G  G
Sbjct: 565 FGRLKDLKLAPTVVTYNILITGLGKEG 591


>gi|14488297|gb|AAK63878.1|AC074105_7 Putative salt-inducible protein [Oryza sativa]
 gi|222612440|gb|EEE50572.1| hypothetical protein OsJ_30721 [Oryza sativa Japonica Group]
          Length = 854

 Score =  167 bits (424), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 133/504 (26%), Positives = 225/504 (44%), Gaps = 30/504 (5%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C   +  +A  LF +M+  G  P +V+Y  L++  CR G M  A  +FDEM   GV  N+
Sbjct: 272 CLYGQAEDAFNLFDEMRVTGCCPTIVTYNILMNELCREGRMVEARMLFDEMLQAGVEVNT 331

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEED------LSVNNAAFANLVDSLCREG 118
           +T++VL+ G  +   +E AN+   ++ + M    D      LS     F      +  + 
Sbjct: 332 ITFNVLIDGYAKAGQMENANMACAEM-KAMGLMPDCCTFNILSAGAYKFGKAALFVLDQQ 390

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
            ++E+F        G  ++ +     +I  LC  GR   A  ++    ++G+  S+  +N
Sbjct: 391 QLHEMF--------GSQLSTD-GIDMLICRLCWDGRLDDAWELLCSAIEKGVQVSVSGFN 441

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
           +++    K G    A++L +   + G  PS  T   L+ GLC    L++AR  L++M+  
Sbjct: 442 ALIAAYSKEGFDEEAFELYKTMNKLGLAPSSSTLNYLIMGLCNRGRLDQARLFLEYMV-- 499

Query: 239 KDVDRTRIC-----NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMG 293
               R   C      IYL +     +    L     M     QPD +  +  +NG C++ 
Sbjct: 500 ----RMGYCVIASFTIYLDSSFRAGDVLGALKCWDDMKIVGLQPDFVAFSAYVNGLCRLD 555

Query: 294 RIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVT 353
            ++EA     +M+  +   P+  T+ ++I      G + EAL L  Q M Q G  P I T
Sbjct: 556 FLDEAYNGFIEMIR-RGLVPNNFTYNSLISAFCRAGNVSEALKL-EQKMRQSGLVPDIFT 613

Query: 354 YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413
            N ++ G  R   +  A  +F  M  IG+  D  TY  +++  C S  ++ A  F + ++
Sbjct: 614 RNILIDGFCREGGLNTANNLFFGMYSIGLTPDVVTYNTMLNAYCRSKDINGAMIFMNKML 673

Query: 414 WPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKR 473
                 D + Y   +  LC +  ++ A+  L EL  +   PN V YN ++DG C   + R
Sbjct: 674 ADGCEPDIFTYNIWMHSLCSNHLLNRAMMLLDELAATDCAPNSVTYNTLMDGICSDVLDR 733

Query: 474 EAYQILREMRKNGLNPDAVTWRIL 497
            A  +   + K    P+ VT  IL
Sbjct: 734 -AMILTGRLIKLAFQPNTVTINIL 756



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 127/508 (25%), Positives = 224/508 (44%), Gaps = 10/508 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M++LC   R+ EA  LF +M   G   N +++  LI GY + G+M+ A     EM+  G+
Sbjct: 303 MNELCREGRMVEARMLFDEMLQAGVEVNTITFNVLIDGYAKAGQMENANMACAEMKAMGL 362

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P+  T+++L  G  +     +A + +    +++ E     ++      L+  LC +G +
Sbjct: 363 MPDCCTFNILSAGAYK---FGKAALFVLD-QQQLHEMFGSQLSTDGIDMLICRLCWDGRL 418

Query: 121 NEVFR-IAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           ++ +  +   + +G  V+       +I +  + G +  A  +   M K GL PS  + N 
Sbjct: 419 DDAWELLCSAIEKGVQVSVS-GFNALIAAYSKEGFDEEAFELYKTMNKLGLAPSSSTLNY 477

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           ++ GLC  G   +A   LE  ++ GY     ++ + ++      D+  A K    M    
Sbjct: 478 LIMGLCNRGRLDQARLFLEYMVRMGYCVIA-SFTIYLDSSFRAGDVLGALKCWDDMKIVG 536

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                   + Y+  LC +    E  N  + M++    P+  T N++I+ FC+ G + EAL
Sbjct: 537 LQPDFVAFSAYVNGLCRLDFLDEAYNGFIEMIRRGLVPNNFTYNSLISAFCRAGNVSEAL 596

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           K+   M       PD  T   +I G    G +  A NL +  M   G +P +VTYN +L 
Sbjct: 597 KLEQKMRQSGL-VPDIFTRNILIDGFCREGGLNTANNLFFG-MYSIGLTPDVVTYNTMLN 654

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
              R + +  A    N ML  G   D  TY I +  LC ++ L+ A    D++       
Sbjct: 655 AYCRSKDINGAMIFMNKMLADGCEPDIFTYNIWMHSLCSNHLLNRAMMLLDELAATDCAP 714

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           ++  Y  ++ G+C S  +  A+     L+     PN V  N++    CK    + A    
Sbjct: 715 NSVTYNTLMDGIC-SDVLDRAMILTGRLIKLAFQPNTVTINILFSHFCKNGFGKRALVWA 773

Query: 480 REMRKNGLNPDAVTWRILDKLHGNRGND 507
            ++R +  N D  T  ILD  + +  +D
Sbjct: 774 EKLRDDSFNFDDATRNILDWAYRDMEDD 801



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 124/491 (25%), Positives = 213/491 (43%), Gaps = 15/491 (3%)

Query: 10  VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSV 69
           V  A K+F +M +RG  PN+  +  +I G C  G + V+  +   M    V+P++ +Y++
Sbjct: 207 VRAAWKVFEEMAARGPRPNLAIFNAMIFGLCHRGLVRVSGGLLGVMGRFHVVPDACSYNI 266

Query: 70  LVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAED 129
           L++G       E A    F L++ M+           +  L++ LCREG + E   + ++
Sbjct: 267 LMKGHCLYGQAEDA----FNLFDEMRVT-GCCPTIVTYNILMNELCREGRMVEARMLFDE 321

Query: 130 MPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG 189
           M Q            +ID   ++G+   A+     M+  GL P   ++N +  G  K G 
Sbjct: 322 MLQAGVEVNTITFNVLIDGYAKAGQMENANMACAEMKAMGLMPDCCTFNILSAGAYKFGK 381

Query: 190 C----MRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTR 245
                +   QL E    FG   S     +L+  LC +  L+ A ++L   + K       
Sbjct: 382 AALFVLDQQQLHE---MFGSQLSTDGIDMLICRLCWDGRLDDAWELLCSAIEKGVQVSVS 438

Query: 246 ICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM 305
             N  + A        E   +   M +    P   TLN +I G C  GR+++A   L  M
Sbjct: 439 GFNALIAAYSKEGFDEEAFELYKTMNKLGLAPSSSTLNYLIMGLCNRGRLDQARLFLEYM 498

Query: 306 VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLR 365
           V   +C     +FT  +      G +  AL   +  M   G  P  V ++A + GL RL 
Sbjct: 499 VRMGYCV--IASFTIYLDSSFRAGDVLGALKC-WDDMKIVGLQPDFVAFSAYVNGLCRLD 555

Query: 366 RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYA 425
            ++EA   F  M+  G+V ++ TY  +I   C +  + EA +    +     + D +   
Sbjct: 556 FLDEAYNGFIEMIRRGLVPNNFTYNSLISAFCRAGNVSEALKLEQKMRQSGLVPDIFTRN 615

Query: 426 AMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN 485
            +I G CR G ++ A +  + +   G+TP++V YN +++  C+      A   + +M  +
Sbjct: 616 ILIDGFCREGGLNTANNLFFGMYSIGLTPDVVTYNTMLNAYCRSKDINGAMIFMNKMLAD 675

Query: 486 GLNPDAVTWRI 496
           G  PD  T+ I
Sbjct: 676 GCEPDIFTYNI 686



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 123/511 (24%), Positives = 215/511 (42%), Gaps = 44/511 (8%)

Query: 23  RGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVER 82
           RG      +    +H +   G  D A  V   +R  G  P+    + L+R + R  +V  
Sbjct: 150 RGRSGRYAARRLALHAFLAAGMADEALDVLARVRRAGDTPSLSALAALLRLLFRGGEVRA 209

Query: 83  ANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFAC 142
           A    +K++E M        N A F  ++  LC  G V     +   M +   V +  + 
Sbjct: 210 A----WKVFEEMAARGP-RPNLAIFNAMIFGLCHRGLVRVSGGLLGVMGRFHVVPDACSY 264

Query: 143 GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQ 202
             ++   C  G+   A  +   MR  G  P++V+YN +++ LC+ G  + A  L +E +Q
Sbjct: 265 NILMKGHCLYGQAEDAFNLFDEMRVTGCCPTIVTYNILMNELCREGRMVEARMLFDEMLQ 324

Query: 203 FGYLPSEHTYKVLVEGLCGESDLEKAR-----------------------------KVLQ 233
            G   +  T+ VL++G      +E A                              K   
Sbjct: 325 AGVEVNTITFNVLIDGYAKAGQMENANMACAEMKAMGLMPDCCTFNILSAGAYKFGKAAL 384

Query: 234 FMLSKKDVDR-------TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVI 286
           F+L ++ +         T   ++ +  LC      +   +L   ++   Q  V   N +I
Sbjct: 385 FVLDQQQLHEMFGSQLSTDGIDMLICRLCWDGRLDDAWELLCSAIEKGVQVSVSGFNALI 444

Query: 287 NGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
             + K G  EEA ++   M      AP + T   +I GL N GR+ +A  L  + M + G
Sbjct: 445 AAYSKEGFDEEAFELYKTMNKLGL-APSSSTLNYLIMGLCNRGRLDQA-RLFLEYMVRMG 502

Query: 347 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406
           Y   I ++   L   FR   V  A + ++ M  +G+  D   ++  ++GLC  + LDEA 
Sbjct: 503 YCV-IASFTIYLDSSFRAGDVLGALKCWDDMKIVGLQPDFVAFSAYVNGLCRLDFLDEAY 561

Query: 407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466
             + +++    + +N+ Y ++I   CR+G + EA+    ++  SG+ P+I   N++IDG 
Sbjct: 562 NGFIEMIRRGLVPNNFTYNSLISAFCRAGNVSEALKLEQKMRQSGLVPDIFTRNILIDGF 621

Query: 467 CKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           C+      A  +   M   GL PD VT+  +
Sbjct: 622 CREGGLNTANNLFFGMYSIGLTPDVVTYNTM 652



 Score = 38.5 bits (88), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 34/69 (49%)

Query: 433 RSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAV 492
           R G++  A     E+   G  PN+  +N +I G C   + R +  +L  M +  + PDA 
Sbjct: 203 RGGEVRAAWKVFEEMAARGPRPNLAIFNAMIFGLCHRGLVRVSGGLLGVMGRFHVVPDAC 262

Query: 493 TWRILDKLH 501
           ++ IL K H
Sbjct: 263 SYNILMKGH 271


>gi|449438586|ref|XP_004137069.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Cucumis sativus]
          Length = 505

 Score =  167 bits (424), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 122/468 (26%), Positives = 214/468 (45%), Gaps = 45/468 (9%)

Query: 23  RGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP-NSLTYSVLVRGVLRTRDVE 81
           +GH P+  S+   +    ++G +D  +  F E  + G    +  ++ + ++      +V 
Sbjct: 67  KGHSPSSFSFNNALDLLAKSGNLDRTWGFFTE--YLGRTQFDVYSFGITIKAFCENGNVS 124

Query: 82  RANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFA 141
           +     F+L  +M E   +S N   +  L+++ CR G +++   +   M        ++ 
Sbjct: 125 KG----FELLAQM-ETMGVSPNVFIYTILIEACCRNGDIDQAKVMFSRMDDLGLAANQYI 179

Query: 142 CGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGI 201
              MI+   + G       +   M+  G+ P+L +YNS++   C+ G    A+++ +E  
Sbjct: 180 YTIMINGFFKKGYKKDGFELYQKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEIS 239

Query: 202 QFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPT 261
           + G   +  TY +L+ GLC +  + KA  +L+ M       R  I            NPT
Sbjct: 240 KRGVACNAVTYNILIGGLCRKGQVSKAEGLLERM------KRAHI------------NPT 281

Query: 262 ELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTI 321
                              T N +++G C  G++++AL  L  +     C P  VT+  +
Sbjct: 282 -----------------TRTFNMLMDGLCNTGQLDKALSYLEKLKLIGLC-PTLVTYNIL 323

Query: 322 IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG 381
           I G   VG     ++ L + M  RG SP  VTY  ++    R   +E+A E+F+ M  IG
Sbjct: 324 ISGFSKVGN-SSVVSELVREMEDRGISPSKVTYTILMNTFVRSDDIEKAYEMFHLMKRIG 382

Query: 382 VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAV 441
           +V D  TY ++I GLC    + EA + +  +V      ++ +Y  MI G C+    ++A+
Sbjct: 383 LVPDQHTYGVLIHGLCIKGNMVEASKLYKSMVEMHLQPNDVIYNTMINGYCKECNSYKAL 442

Query: 442 HFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNP 489
            FL E+V +GVTPN+  Y   I   CK     EA ++L+EM + GL P
Sbjct: 443 KFLEEMVKNGVTPNVASYISTIQILCKDGKSIEAKRLLKEMTEAGLKP 490



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 85/305 (27%), Positives = 151/305 (49%), Gaps = 5/305 (1%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           +  +L+  MK  G +PN+ +Y +LI  YCR G++ +A+KVFDE+   GV  N++TY++L+
Sbjct: 195 DGFELYQKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEISKRGVACNAVTYNILI 254

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP 131
            G+ R   V +A  L+    ERMK    ++     F  L+D LC  G +++     E + 
Sbjct: 255 GGLCRKGQVSKAEGLL----ERMKRAH-INPTTRTFNMLMDGLCNTGQLDKALSYLEKLK 309

Query: 132 QGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCM 191
                        +I    + G +   S +V  M  RG++PS V+Y  +++   +     
Sbjct: 310 LIGLCPTLVTYNILISGFSKVGNSSVVSELVREMEDRGISPSKVTYTILMNTFVRSDDIE 369

Query: 192 RAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYL 251
           +AY++     + G +P +HTY VL+ GLC + ++ +A K+ + M+         I N  +
Sbjct: 370 KAYEMFHLMKRIGLVPDQHTYGVLIHGLCIKGNMVEASKLYKSMVEMHLQPNDVIYNTMI 429

Query: 252 RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC 311
              C   N  + L  L  M++    P+V +  + I   CK G+  EA ++L +M      
Sbjct: 430 NGYCKECNSYKALKFLEEMVKNGVTPNVASYISTIQILCKDGKSIEAKRLLKEMTEAGLK 489

Query: 312 APDAV 316
            P+++
Sbjct: 490 PPESL 494



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 102/390 (26%), Positives = 167/390 (42%), Gaps = 39/390 (10%)

Query: 106 AFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVM 165
           +F   + + C  G V++ F +   M         F    +I++ CR+G    A  +   M
Sbjct: 109 SFGITIKAFCENGNVSKGFELLAQMETMGVSPNVFIYTILIEACCRNGDIDQAKVMFSRM 168

Query: 166 RKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDL 225
              GL  +   Y  +++G  K G     ++L ++    G LP+ +TY  L+   C +  L
Sbjct: 169 DDLGLAANQYIYTIMINGFFKKGYKKDGFELYQKMKLVGVLPNLYTYNSLITEYCRDGKL 228

Query: 226 EKARKVLQFMLSKKDVDRTRIC-NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNT 284
             A KV    +SK+ V    +  NI +  LC     ++   +L  M +    P   T N 
Sbjct: 229 SLAFKVFD-EISKRGVACNAVTYNILIGGLCRKGQVSKAEGLLERMKRAHINPTTRTFNM 287

Query: 285 VINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ 344
           +++G C  G++++AL  L  +     C P  VT+  +I G   VG     ++ L + M  
Sbjct: 288 LMDGLCNTGQLDKALSYLEKLKLIGLC-PTLVTYNILISGFSKVGN-SSVVSELVREMED 345

Query: 345 RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 404
           RG SP  VTY  ++    R   +E+A E+F+ M  IG+V                     
Sbjct: 346 RGISPSKVTYTILMNTFVRSDDIEKAYEMFHLMKRIGLVP-------------------- 385

Query: 405 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
                          D + Y  +I GLC  G + EA      +V+  + PN V YN +I+
Sbjct: 386 ---------------DQHTYGVLIHGLCIKGNMVEASKLYKSMVEMHLQPNDVIYNTMIN 430

Query: 465 GACKLSMKREAYQILREMRKNGLNPDAVTW 494
           G CK     +A + L EM KNG+ P+  ++
Sbjct: 431 GYCKECNSYKALKFLEEMVKNGVTPNVASY 460



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 93/349 (26%), Positives = 163/349 (46%), Gaps = 7/349 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C    + +A  +F  M   G   N   YT +I+G+ + G     ++++ +M+  GV
Sbjct: 149 IEACCRNGDIDQAKVMFSRMDDLGLAANQYIYTIMINGFFKKGYKKDGFELYQKMKLVGV 208

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           LPN  TY+ L+    R   +     L FK+++ +  +  ++ N   +  L+  LCR+G V
Sbjct: 209 LPNLYTYNSLITEYCRDGKLS----LAFKVFDEI-SKRGVACNAVTYNILIGGLCRKGQV 263

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           ++   + E M +            ++D LC +G+   A   +  ++  GL P+LV+YN +
Sbjct: 264 SKAEGLLERMKRAHINPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIGLCPTLVTYNIL 323

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G  K G      +L+ E    G  PS+ TY +L+       D+EKA ++   M     
Sbjct: 324 ISGFSKVGNSSVVSELVREMEDRGISPSKVTYTILMNTFVRSDDIEKAYEMFHLMKRIGL 383

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           V       + +  LC+  N  E   +   M++   QP+ +  NT+ING+CK     +ALK
Sbjct: 384 VPDQHTYGVLIHGLCIKGNMVEASKLYKSMVEMHLQPNDVIYNTMINGYCKECNSYKALK 443

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSP 349
            L +MV      P+  ++ + I  L   G+  EA  LL + M + G  P
Sbjct: 444 FLEEMVKNG-VTPNVASYISTIQILCKDGKSIEAKRLLKE-MTEAGLKP 490



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 79/310 (25%), Positives = 145/310 (46%), Gaps = 10/310 (3%)

Query: 195 QLLEEGIQF-------GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC 247
           QLLE+ +         G+ PS  ++   ++ L    +L++        L +   D     
Sbjct: 52  QLLEQSLDSFKLMVLKGHSPSSFSFNNALDLLAKSGNLDRTWGFFTEYLGRTQFDVYSF- 110

Query: 248 NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA 307
            I ++A C   N ++   +L  M      P+V     +I   C+ G I++A KV+   + 
Sbjct: 111 GITIKAFCENGNVSKGFELLAQMETMGVSPNVFIYTILIEACCRNGDIDQA-KVMFSRMD 169

Query: 308 GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRV 367
               A +   +T +I G    G  ++   L YQ M   G  P + TYN+++    R  ++
Sbjct: 170 DLGLAANQYIYTIMINGFFKKGYKKDGFEL-YQKMKLVGVLPNLYTYNSLITEYCRDGKL 228

Query: 368 EEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAM 427
             A +VF+ +   GV  ++ TY I+I GLC   Q+ +A+   + +           +  +
Sbjct: 229 SLAFKVFDEISKRGVACNAVTYNILIGGLCRKGQVSKAEGLLERMKRAHINPTTRTFNML 288

Query: 428 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
           + GLC +G++ +A+ +L +L   G+ P +V YN++I G  K+       +++REM   G+
Sbjct: 289 MDGLCNTGQLDKALSYLEKLKLIGLCPTLVTYNILISGFSKVGNSSVVSELVREMEDRGI 348

Query: 488 NPDAVTWRIL 497
           +P  VT+ IL
Sbjct: 349 SPSKVTYTIL 358



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 106/209 (50%), Gaps = 5/209 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           MD LC   ++ +A      +K  G  P +V+Y  LI G+ + G   V  ++  EM   G+
Sbjct: 289 MDGLCNTGQLDKALSYLEKLKLIGLCPTLVTYNILISGFSKVGNSSVVSELVREMEDRGI 348

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TY++L+   +R+ D+E+A   MF L +R+     L  +   +  L+  LC +G +
Sbjct: 349 SPSKVTYTILMNTFVRSDDIEKA-YEMFHLMKRI----GLVPDQHTYGVLIHGLCIKGNM 403

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E  ++ + M +      +     MI+  C+   ++ A + +  M K G+TP++ SY S 
Sbjct: 404 VEASKLYKSMVEMHLQPNDVIYNTMINGYCKECNSYKALKFLEEMVKNGVTPNVASYIST 463

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSE 209
           +  LCK G  + A +LL+E  + G  P E
Sbjct: 464 IQILCKDGKSIEAKRLLKEMTEAGLKPPE 492



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 74/328 (22%), Positives = 146/328 (44%), Gaps = 41/328 (12%)

Query: 176 SYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM 235
           S+   +   C++G   + ++LL +    G  P+   Y +L+E  C   D+++A+     M
Sbjct: 109 SFGITIKAFCENGNVSKGFELLAQMETMGVSPNVFIYTILIEACCRNGDIDQAK----VM 164

Query: 236 LSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 295
            S+ D D     N Y+  +                              +INGF K G  
Sbjct: 165 FSRMD-DLGLAANQYIYTI------------------------------MINGFFKKGYK 193

Query: 296 EEALKVLNDM-VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTY 354
           ++  ++   M + G    P+  T+ ++I      G++  A  +  ++  +RG +   VTY
Sbjct: 194 KDGFELYQKMKLVG--VLPNLYTYNSLITEYCRDGKLSLAFKVFDEI-SKRGVACNAVTY 250

Query: 355 NAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVW 414
           N ++ GL R  +V +A+ +   M    +   + T+ +++DGLC + QLD+A  + + +  
Sbjct: 251 NILIGGLCRKGQVSKAEGLLERMKRAHINPTTRTFNMLMDGLCNTGQLDKALSYLEKLKL 310

Query: 415 PSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKRE 474
                    Y  +I G  + G        + E+ D G++P+ V Y ++++   +     +
Sbjct: 311 IGLCPTLVTYNILISGFSKVGNSSVVSELVREMEDRGISPSKVTYTILMNTFVRSDDIEK 370

Query: 475 AYQILREMRKNGLNPDAVTWRILDKLHG 502
           AY++   M++ GL PD  T+ +L  +HG
Sbjct: 371 AYEMFHLMKRIGLVPDQHTYGVL--IHG 396



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 88/401 (21%), Positives = 177/401 (44%), Gaps = 46/401 (11%)

Query: 101 SVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASR 160
           S ++ +F N +D L + G ++  +    +   G++  + ++ G  I + C +G       
Sbjct: 70  SPSSFSFNNALDLLAKSGNLDRTWGFFTEY-LGRTQFDVYSFGITIKAFCENGNVSKGFE 128

Query: 161 VVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLC 220
           ++  M   G++P++  Y  ++   C++G   +A  +       G   +++ Y +++ G  
Sbjct: 129 LLAQMETMGVSPNVFIYTILIEACCRNGDIDQAKVMFSRMDDLGLAANQYIYTIMINGF- 187

Query: 221 GESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVI 280
                +K  K   F L +K                      +L+ VL         P++ 
Sbjct: 188 ----FKKGYKKDGFELYQK---------------------MKLVGVL---------PNLY 213

Query: 281 TLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQ 340
           T N++I  +C+ G++  A KV  D ++ +  A +AVT+  +I GL   G++ +A  LL +
Sbjct: 214 TYNSLITEYCRDGKLSLAFKVF-DEISKRGVACNAVTYNILIGGLCRKGQVSKAEGLL-E 271

Query: 341 VMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE-- 398
            M +   +P   T+N ++ GL    ++++A      +  IG+     TY I+I G  +  
Sbjct: 272 RMKRAHINPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIGLCPTLVTYNILISGFSKVG 331

Query: 399 -SNQLDEAKRFWDDI-VWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNI 456
            S+ + E  R  +D  + PS +     Y  ++    RS  I +A    + +   G+ P+ 
Sbjct: 332 NSSVVSELVREMEDRGISPSKV----TYTILMNTFVRSDDIEKAYEMFHLMKRIGLVPDQ 387

Query: 457 VCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
             Y V+I G C      EA ++ + M +  L P+ V +  +
Sbjct: 388 HTYGVLIHGLCIKGNMVEASKLYKSMVEMHLQPNDVIYNTM 428



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 105/234 (44%), Gaps = 2/234 (0%)

Query: 274 QCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQE 333
           + Q DV +    I  FC+ G + +  ++L  M      +P+   +T +I      G I +
Sbjct: 102 RTQFDVYSFGITIKAFCENGNVSKGFELLAQMETMG-VSPNVFIYTILIEACCRNGDIDQ 160

Query: 334 ALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVI 393
           A  +++  M   G +     Y  ++ G F+    ++  E++  M  +GV+ +  TY  +I
Sbjct: 161 A-KVMFSRMDDLGLAANQYIYTIMINGFFKKGYKKDGFELYQKMKLVGVLPNLYTYNSLI 219

Query: 394 DGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVT 453
              C   +L  A + +D+I       +   Y  +I GLCR G++ +A   L  +  + + 
Sbjct: 220 TEYCRDGKLSLAFKVFDEISKRGVACNAVTYNILIGGLCRKGQVSKAEGLLERMKRAHIN 279

Query: 454 PNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGND 507
           P    +N+++DG C      +A   L +++  GL P  VT+ IL       GN 
Sbjct: 280 PTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIGLCPTLVTYNILISGFSKVGNS 333


>gi|255577256|ref|XP_002529510.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531026|gb|EEF32879.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 804

 Score =  167 bits (424), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 117/431 (27%), Positives = 212/431 (49%), Gaps = 26/431 (6%)

Query: 26  VPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANV 85
           +PN+ +++ LI G C++G+   A ++FDEM    +LPN +TY++++ G+ + +  + A  
Sbjct: 193 LPNIATFSILIDGMCKSGKTQNALQMFDEMTQRRILPNKITYTIIISGLCQAQKADVA-- 250

Query: 86  LMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHM 145
             ++L+  MK+   +  ++  +  L+   C+ G V+E   + +   + + V ++     +
Sbjct: 251 --YRLFIAMKDHGCIP-DSVTYNALLHGFCKLGRVDEALGLLKYFEKDRYVLDKQGYSCL 307

Query: 146 IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY 205
           ID L R+ R   A      M +  + P ++ Y  ++ GL K G    A +LL E  + G 
Sbjct: 308 IDGLFRARRFEDAQVWYRKMTEHNIKPDVILYTIMMKGLSKAGKFKDALRLLNEMTERGL 367

Query: 206 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC-NIYLRALC---LIKNPT 261
           +P  H Y  L++G C    L++A K L   +SK D   +     I +  +C   L+ +  
Sbjct: 368 VPDTHCYNALIKGYCDLGLLDEA-KSLHLEISKNDCFSSACTYTILICGMCRSGLVGDAQ 426

Query: 262 ELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCA--------- 312
           ++ N    M +  C P V+T N +I+GFCK G IE+A  +   M  G+  +         
Sbjct: 427 QIFNE---MEKHGCYPSVVTFNALIDGFCKAGNIEKAQLLFYKMEIGRNPSLFLRLSQGA 483

Query: 313 ---PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEE 369
               D  +  T++  L + G I +A N+L Q +   G++P I+TYN ++ G  +   +  
Sbjct: 484 NRVLDTASLQTMVEQLCDSGLILKAYNILMQ-LTDSGFAPNIITYNILIHGFCKAGNING 542

Query: 370 AKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIK 429
           A ++F  +   G+  DS TY  +I+GL  +N+ ++A    D I+         VY + + 
Sbjct: 543 AFKLFKELQLKGLSPDSVTYGTLINGLLSANREEDAFTVLDQILKNGCTPITEVYKSFMT 602

Query: 430 GLCRSGKIHEA 440
             CR  KI  A
Sbjct: 603 WSCRRNKITLA 613



 Score =  164 bits (416), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 122/493 (24%), Positives = 232/493 (47%), Gaps = 22/493 (4%)

Query: 30  VSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFK 89
           VS+  +I    +    ++ ++V  E++ CG   ++  ++VL++   +   +E+A V  F+
Sbjct: 92  VSHNMIIDMLIKDNGFELYWQVLKEIKRCGFSISADAFTVLIQAYAKMDMIEKA-VESFE 150

Query: 90  LWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSL 149
           + +    + D+   N     +V    R+  V     I   M +   +        +ID +
Sbjct: 151 MMKDFDCKPDVFTYNTVLHVMV----RKEVVLLALGIYNRMLKLNCLPNIATFSILIDGM 206

Query: 150 CRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSE 209
           C+SG+   A ++   M +R + P+ ++Y  I+ GLC+      AY+L       G +P  
Sbjct: 207 CKSGKTQNALQMFDEMTQRRILPNKITYTIIISGLCQAQKADVAYRLFIAMKDHGCIPDS 266

Query: 210 HTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVF 269
            TY  L+ G C    +++A  +L++    + V   +  +  +  L   +   +       
Sbjct: 267 VTYNALLHGFCKLGRVDEALGLLKYFEKDRYVLDKQGYSCLIDGLFRARRFEDAQVWYRK 326

Query: 270 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG 329
           M +   +PDVI    ++ G  K G+ ++AL++LN+M   +   PD   +  +I G  ++G
Sbjct: 327 MTEHNIKPDVILYTIMMKGLSKAGKFKDALRLLNEMTE-RGLVPDTHCYNALIKGYCDLG 385

Query: 330 RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTY 389
            + EA +L  ++     +S    TY  ++ G+ R   V +A+++FN M   G      T+
Sbjct: 386 LLDEAKSLHLEISKNDCFSSA-CTYTILICGMCRSGLVGDAQQIFNEMEKHGCYPSVVTF 444

Query: 390 AIVIDGLCESNQLDEAKRFWDDIVWPSN-------------IHDNYVYAAMIKGLCRSGK 436
             +IDG C++  +++A+  +  +    N             + D      M++ LC SG 
Sbjct: 445 NALIDGFCKAGNIEKAQLLFYKMEIGRNPSLFLRLSQGANRVLDTASLQTMVEQLCDSGL 504

Query: 437 IHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRI 496
           I +A + L +L DSG  PNI+ YN++I G CK      A+++ +E++  GL+PD+VT+  
Sbjct: 505 ILKAYNILMQLTDSGFAPNIITYNILIHGFCKAGNINGAFKLFKELQLKGLSPDSVTYGT 564

Query: 497 LDK--LHGNRGND 507
           L    L  NR  D
Sbjct: 565 LINGLLSANREED 577



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 118/484 (24%), Positives = 225/484 (46%), Gaps = 20/484 (4%)

Query: 19  DMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTR 78
           ++K  G   +  ++T LI  Y +   ++ A + F+ M+     P+  TY+ ++  ++R  
Sbjct: 116 EIKRCGFSISADAFTVLIQAYAKMDMIEKAVESFEMMKDFDCKPDVFTYNTVLHVMVRKE 175

Query: 79  DVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNE 138
            V    +L   ++ RM +   L  N A F+ L+D +C+ G      ++ ++M Q + +  
Sbjct: 176 VV----LLALGIYNRMLKLNCLP-NIATFSILIDGMCKSGKTQNALQMFDEMTQRRILPN 230

Query: 139 EFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLE 198
           +     +I  LC++ +   A R+   M+  G  P  V+YN+++HG CK G    A  LL+
Sbjct: 231 KITYTIIISGLCQAQKADVAYRLFIAMKDHGCIPDSVTYNALLHGFCKLGRVDEALGLLK 290

Query: 199 EGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIK 258
              +  Y+  +  Y  L++GL      E A+   + M          +  I ++ L    
Sbjct: 291 YFEKDRYVLDKQGYSCLIDGLFRARRFEDAQVWYRKMTEHNIKPDVILYTIMMKGLSKAG 350

Query: 259 NPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTF 318
              + L +L  M +    PD    N +I G+C +G ++EA K L+  ++   C   A T+
Sbjct: 351 KFKDALRLLNEMTERGLVPDTHCYNALIKGYCDLGLLDEA-KSLHLEISKNDCFSSACTY 409

Query: 319 TTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCM- 377
           T +I G+   G + +A  + +  M + G  P +VT+NA++ G  +   +E+A+ +F  M 
Sbjct: 410 TILICGMCRSGLVGDAQQI-FNEMEKHGCYPSVVTFNALIDGFCKAGNIEKAQLLFYKME 468

Query: 378 ------------LGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYA 425
                        G   V D+ +   +++ LC+S  + +A      +       +   Y 
Sbjct: 469 IGRNPSLFLRLSQGANRVLDTASLQTMVEQLCDSGLILKAYNILMQLTDSGFAPNIITYN 528

Query: 426 AMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN 485
            +I G C++G I+ A     EL   G++P+ V Y  +I+G    + + +A+ +L ++ KN
Sbjct: 529 ILIHGFCKAGNINGAFKLFKELQLKGLSPDSVTYGTLINGLLSANREEDAFTVLDQILKN 588

Query: 486 GLNP 489
           G  P
Sbjct: 589 GCTP 592



 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 100/328 (30%), Positives = 167/328 (50%), Gaps = 8/328 (2%)

Query: 173 SLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVL 232
           S VS+N I+  L K  G    +Q+L+E  + G+  S   + VL++       +EKA +  
Sbjct: 90  SWVSHNMIIDMLIKDNGFELYWQVLKEIKRCGFSISADAFTVLIQAYAKMDMIEKAVESF 149

Query: 233 QFMLSKKDVDRTRICNIYLRAL-CLIKNPTELLNVLVF--MLQTQCQPDVITLNTVINGF 289
           + M   KD D       Y   L  +++    LL + ++  ML+  C P++ T + +I+G 
Sbjct: 150 EMM---KDFDCKPDVFTYNTVLHVMVRKEVVLLALGIYNRMLKLNCLPNIATFSILIDGM 206

Query: 290 CKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSP 349
           CK G+ + AL++ ++M   +   P+ +T+T II GL    +   A   L+  M   G  P
Sbjct: 207 CKSGKTQNALQMFDEMTQRRIL-PNKITYTIIISGLCQAQKADVAYR-LFIAMKDHGCIP 264

Query: 350 GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFW 409
             VTYNA+L G  +L RV+EA  +         V D   Y+ +IDGL  + + ++A+ ++
Sbjct: 265 DSVTYNALLHGFCKLGRVDEALGLLKYFEKDRYVLDKQGYSCLIDGLFRARRFEDAQVWY 324

Query: 410 DDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKL 469
             +   +   D  +Y  M+KGL ++GK  +A+  L E+ + G+ P+  CYN +I G C L
Sbjct: 325 RKMTEHNIKPDVILYTIMMKGLSKAGKFKDALRLLNEMTERGLVPDTHCYNALIKGYCDL 384

Query: 470 SMKREAYQILREMRKNGLNPDAVTWRIL 497
            +  EA  +  E+ KN     A T+ IL
Sbjct: 385 GLLDEAKSLHLEISKNDCFSSACTYTIL 412



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 113/233 (48%), Gaps = 5/233 (2%)

Query: 256 LIKNP-TELLNVLVFMLQTQCQP--DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCA 312
           +IKNP   LL    F+  ++ +     ++ N +I+   K    E   +VL ++    F +
Sbjct: 65  IIKNPPNSLLGFRFFIWASKFRRLRSWVSHNMIIDMLIKDNGFELYWQVLKEIKRCGF-S 123

Query: 313 PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKE 372
             A  FT +I     +  I++A+   +++M      P + TYN VL  + R   V  A  
Sbjct: 124 ISADAFTVLIQAYAKMDMIEKAVES-FEMMKDFDCKPDVFTYNTVLHVMVRKEVVLLALG 182

Query: 373 VFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLC 432
           ++N ML +  + +  T++I+IDG+C+S +   A + +D++     + +   Y  +I GLC
Sbjct: 183 IYNRMLKLNCLPNIATFSILIDGMCKSGKTQNALQMFDEMTQRRILPNKITYTIIISGLC 242

Query: 433 RSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN 485
           ++ K   A      + D G  P+ V YN ++ G CKL    EA  +L+   K+
Sbjct: 243 QAQKADVAYRLFIAMKDHGCIPDSVTYNALLHGFCKLGRVDEALGLLKYFEKD 295



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 64/270 (23%), Positives = 120/270 (44%), Gaps = 38/270 (14%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++QLC    + +A+ +   +   G  PN+++Y  LIHG+C+ G ++ A+K+F E++  G+
Sbjct: 496 VEQLCDSGLILKAYNILMQLTDSGFAPNIITYNILIHGFCKAGNINGAFKLFKELQLKGL 555

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+S+TY  L+ G+L     E A    F + +++ +     +    + + +   CR   +
Sbjct: 556 SPDSVTYGTLINGLLSANREEDA----FTVLDQILKNGCTPITE-VYKSFMTWSCRRNKI 610

Query: 121 NEVFRI---------AEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLT 171
              F +           D    KSV E F  G + +++       G   + + +    L 
Sbjct: 611 TLAFSLWLKYLRSIPGRDSEVLKSVEENFEKGEVEEAV------RGLLEMDFKLNDFQLA 664

Query: 172 PSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKV-------LVEGLCGESD 224
           P    Y   + GLC+ G        LEE ++  +   EH   V       L+  L    +
Sbjct: 665 P----YTIWLIGLCQAGR-------LEEALKIFFTLEEHNVLVTPPSCVKLIYRLLKVGN 713

Query: 225 LEKARKVLQFMLSKKDVDRTRICNIYLRAL 254
           L+ A ++  + + K  +   RICN  L++L
Sbjct: 714 LDLAAEIFLYTIDKGYMLMPRICNRLLKSL 743


>gi|8778411|gb|AAF79419.1|AC025808_1 F18O14.1 [Arabidopsis thaliana]
          Length = 689

 Score =  167 bits (424), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 132/554 (23%), Positives = 243/554 (43%), Gaps = 85/554 (15%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRT-- 77
           M  RG   NVV+YT+LI GYC+ G M+ A  VF+ ++   ++ +   Y VL+ G  RT  
Sbjct: 72  MSERGVSRNVVTYTSLIKGYCKKGLMEEAEHVFELLKEKKLVADQHMYGVLMDGYCRTGQ 131

Query: 78  -RDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSV 136
            RD  R +  M ++  R         N     +L++  C+ G + E  +I   M      
Sbjct: 132 IRDAVRVHDNMIEIGVR--------TNTTICNSLINGYCKSGQLVEAEQIFSRMNDWSLK 183

Query: 137 NEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQL 196
            +      ++D  CR+G    A ++   M ++ + P++++YN ++ G  + G       L
Sbjct: 184 PDHHTYNTLVDGYCRAGYVDEALKLCDQMCQKEVVPTVMTYNILLKGYSRIGAFHDVLSL 243

Query: 197 LEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCL 256
            +  ++ G    E +   L+E L    D  +A K+ + +L++  +  T   N+ +  LC 
Sbjct: 244 WKMMLKRGVNADEISCSTLLEALFKLGDFNEAMKLWENVLARGLLTDTITLNVMISGLCK 303

Query: 257 IKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV--------------- 301
           ++   E   +L  +   +C+P V T   + +G+ K+G ++EA  V               
Sbjct: 304 MEKVNEAKEILDNVNIFRCKPAVQTYQALSHGYYKVGNLKEAFAVKEYMERKGIFPTIEM 363

Query: 302 LNDMVAGKF-------------------CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVM 342
            N +++G F                     P   T+  +I G  N+G I +A    ++ M
Sbjct: 364 YNTLISGAFKYRHLNKVADLVIELRARGLTPTVATYGALITGWCNIGMIDKAYATCFE-M 422

Query: 343 PQRGYSPGIVTYNAVLRGLFRLRRVEEA-------------------------------- 370
            ++G +  +   + +   LFRL +++EA                                
Sbjct: 423 IEKGITLNVNICSKIANSLFRLDKIDEACLLLQKIVDFDLLLPGYQSLKEFLEASATTCL 482

Query: 371 ------KEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN-IHDNYV 423
                 + V N      +V ++  Y + I GLC++ +L++A++ + D++     I D Y 
Sbjct: 483 KTQKIAESVENSTPKKLLVPNNIVYNVAIAGLCKAGKLEDARKLFSDLLSSDRFIPDEYT 542

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y  +I G   +G I++A     E+   G+ PNIV YN +I G CKL     A ++L ++ 
Sbjct: 543 YTILIHGCAIAGDINKAFTLRDEMALKGIIPNIVTYNALIKGLCKLGNVDRAQRLLHKLP 602

Query: 484 KNGLNPDAVTWRIL 497
           + G+ P+A+T+  L
Sbjct: 603 QKGITPNAITYNTL 616



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 129/556 (23%), Positives = 240/556 (43%), Gaps = 79/556 (14%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C    + EA  +F  +K +  V +   Y  L+ GYCRTG++  A +V D M   GV  N+
Sbjct: 92  CKKGLMEEAEHVFELLKEKKLVADQHMYGVLMDGYCRTGQIRDAVRVHDNMIEIGVRTNT 151

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
              + L+ G  ++  +  A     +++ RM +   L  ++  +  LVD  CR GYV+E  
Sbjct: 152 TICNSLINGYCKSGQLVEAE----QIFSRMNDWS-LKPDHHTYNTLVDGYCRAGYVDEAL 206

Query: 125 RIAEDMPQGKSV-----------------------------------NEEFACGHMIDSL 149
           ++ + M Q + V                                    +E +C  ++++L
Sbjct: 207 KLCDQMCQKEVVPTVMTYNILLKGYSRIGAFHDVLSLWKMMLKRGVNADEISCSTLLEAL 266

Query: 150 CRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSE 209
            + G  + A ++   +  RGL    ++ N ++ GLCK      A ++L+    F   P+ 
Sbjct: 267 FKLGDFNEAMKLWENVLARGLLTDTITLNVMISGLCKMEKVNEAKEILDNVNIFRCKPAV 326

Query: 210 HTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVF 269
            TY+ L  G     +L++A  V ++M  K       + N  +      ++  ++ ++++ 
Sbjct: 327 QTYQALSHGYYKVGNLKEAFAVKEYMERKGIFPTIEMYNTLISGAFKYRHLNKVADLVIE 386

Query: 270 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG 329
           +      P V T   +I G+C +G I++A     +M+  K    +    + I   L  + 
Sbjct: 387 LRARGLTPTVATYGALITGWCNIGMIDKAYATCFEMIE-KGITLNVNICSKIANSLFRLD 445

Query: 330 RIQEALNLLYQVM-------------------------------------PQRGYSPGIV 352
           +I EA  LL +++                                     P++   P  +
Sbjct: 446 KIDEACLLLQKIVDFDLLLPGYQSLKEFLEASATTCLKTQKIAESVENSTPKKLLVPNNI 505

Query: 353 TYNAVLRGLFRLRRVEEAKEVFNCMLGIG-VVADSTTYAIVIDGLCESNQLDEAKRFWDD 411
            YN  + GL +  ++E+A+++F+ +L     + D  TY I+I G   +  +++A    D+
Sbjct: 506 VYNVAIAGLCKAGKLEDARKLFSDLLSSDRFIPDEYTYTILIHGCAIAGDINKAFTLRDE 565

Query: 412 IVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSM 471
           +     I +   Y A+IKGLC+ G +  A   L++L   G+TPN + YN +IDG  K   
Sbjct: 566 MALKGIIPNIVTYNALIKGLCKLGNVDRAQRLLHKLPQKGITPNAITYNTLIDGLVKSGN 625

Query: 472 KREAYQILREMRKNGL 487
             EA ++  +M + GL
Sbjct: 626 VAEAMRLKEKMIEKGL 641



 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 120/463 (25%), Positives = 215/463 (46%), Gaps = 17/463 (3%)

Query: 27  PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHC-GVLPNSLTYSVLVRGVLRTRDVERANV 85
           P+V + + +++ YCR+G +D A     E     G+  N +TY+ L+ G     DVE    
Sbjct: 8   PDVFTCSIVVNAYCRSGNVDKAMVFAKETESSLGLELNVVTYNSLINGYAMIGDVEGMTR 67

Query: 86  LMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHM 145
           ++     R+  E  +S N   + +L+   C++G + E   + E + + K V ++   G +
Sbjct: 68  VL-----RLMSERGVSRNVVTYTSLIKGYCKKGLMEEAEHVFELLKEKKLVADQHMYGVL 122

Query: 146 IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY 205
           +D  CR+G+   A RV   M + G+  +    NS+++G CK G  + A Q+      +  
Sbjct: 123 MDGYCRTGQIRDAVRVHDNMIEIGVRTNTTICNSLINGYCKSGQLVEAEQIFSRMNDWSL 182

Query: 206 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 265
            P  HTY  LV+G C    +++A K+   M  K+ V      NI L+    I    ++L+
Sbjct: 183 KPDHHTYNTLVDGYCRAGYVDEALKLCDQMCQKEVVPTVMTYNILLKGYSRIGAFHDVLS 242

Query: 266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 325
           +   ML+     D I+ +T++    K+G   EA+K+  +++A +    D +T   +I GL
Sbjct: 243 LWKMMLKRGVNADEISCSTLLEALFKLGDFNEAMKLWENVLA-RGLLTDTITLNVMISGL 301

Query: 326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 385
             + ++ EA  +L  V   R   P + TY A+  G +++  ++EA  V   M   G+   
Sbjct: 302 CKMEKVNEAKEILDNVNIFR-CKPAVQTYQALSHGYYKVGNLKEAFAVKEYMERKGIFPT 360

Query: 386 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY 445
              Y  +I G  +   L++      ++           Y A+I G C  G I +A    +
Sbjct: 361 IEMYNTLISGAFKYRHLNKVADLVIELRARGLTPTVATYGALITGWCNIGMIDKAYATCF 420

Query: 446 ELVDSGVTPNI-VCYNVV--------IDGACKLSMKREAYQIL 479
           E+++ G+T N+ +C  +         ID AC L  K   + +L
Sbjct: 421 EMIEKGITLNVNICSKIANSLFRLDKIDEACLLLQKIVDFDLL 463



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 94/356 (26%), Positives = 171/356 (48%), Gaps = 13/356 (3%)

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKR---GLTPSLVSYNSIVHGLCKHG---GCMRA 193
           F C  ++++ CRSG    A  +V+        GL  ++V+YNS+++G    G   G  R 
Sbjct: 11  FTCSIVVNAYCRSGNVDKA--MVFAKETESSLGLELNVVTYNSLINGYAMIGDVEGMTRV 68

Query: 194 YQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRA 253
            +L+ E    G   +  TY  L++G C +  +E+A  V + +  KK V    +  + +  
Sbjct: 69  LRLMSER---GVSRNVVTYTSLIKGYCKKGLMEEAEHVFELLKEKKLVADQHMYGVLMDG 125

Query: 254 LCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAP 313
            C      + + V   M++   + +    N++ING+CK G++ EA ++ + M       P
Sbjct: 126 YCRTGQIRDAVRVHDNMIEIGVRTNTTICNSLINGYCKSGQLVEAEQIFSRMNDWSL-KP 184

Query: 314 DAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEV 373
           D  T+ T++ G    G + EAL L  Q M Q+   P ++TYN +L+G  R+    +   +
Sbjct: 185 DHHTYNTLVDGYCRAGYVDEALKLCDQ-MCQKEVVPTVMTYNILLKGYSRIGAFHDVLSL 243

Query: 374 FNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR 433
           +  ML  GV AD  + + +++ L +    +EA + W++++    + D      MI GLC+
Sbjct: 244 WKMMLKRGVNADEISCSTLLEALFKLGDFNEAMKLWENVLARGLLTDTITLNVMISGLCK 303

Query: 434 SGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNP 489
             K++EA   L  +      P +  Y  +  G  K+   +EA+ +   M + G+ P
Sbjct: 304 MEKVNEAKEILDNVNIFRCKPAVQTYQALSHGYYKVGNLKEAFAVKEYMERKGIFP 359



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 112/489 (22%), Positives = 195/489 (39%), Gaps = 112/489 (22%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C   ++ EA ++F  M      P+  +Y TL+ GYCR G +D A K+ D+M    V+P  
Sbjct: 162 CKSGQLVEAEQIFSRMNDWSLKPDHHTYNTLVDGYCRAGYVDEALKLCDQMCQKEVVPTV 221

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           +TY++L++G  R          +  LW +M  +  ++ +  + + L+++L + G  NE  
Sbjct: 222 MTYNILLKGYSRIGAFHD----VLSLW-KMMLKRGVNADEISCSTLLEALFKLGDFNEAM 276

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGR--------------------------NHG- 157
           ++ E++     + +      MI  LC+  +                          +HG 
Sbjct: 277 KLWENVLARGLLTDTITLNVMISGLCKMEKVNEAKEILDNVNIFRCKPAVQTYQALSHGY 336

Query: 158 --------ASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSE 209
                   A  V   M ++G+ P++  YN+++ G  K+    +   L+ E    G  P+ 
Sbjct: 337 YKVGNLKEAFAVKEYMERKGIFPTIEMYNTLISGAFKYRHLNKVADLVIELRARGLTPTV 396

Query: 210 HTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRAL---------CLIKNP 260
            TY  L+ G C    ++KA      M+ K       IC+    +L         CL+   
Sbjct: 397 ATYGALITGWCNIGMIDKAYATCFEMIEKGITLNVNICSKIANSLFRLDKIDEACLLLQK 456

Query: 261 TELLNVLV--------FM-------LQTQ--------------CQPDVITLNTVINGFCK 291
               ++L+        F+       L+TQ                P+ I  N  I G CK
Sbjct: 457 IVDFDLLLPGYQSLKEFLEASATTCLKTQKIAESVENSTPKKLLVPNNIVYNVAIAGLCK 516

Query: 292 MGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNL-------------- 337
            G++E+A K+ +D+++     PD  T+T +I G    G I +A  L              
Sbjct: 517 AGKLEDARKLFSDLLSSDRFIPDEYTYTILIHGCAIAGDINKAFTLRDEMALKGIIPNIV 576

Query: 338 --------------------LYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCM 377
                               L   +PQ+G +P  +TYN ++ GL +   V EA  +   M
Sbjct: 577 TYNALIKGLCKLGNVDRAQRLLHKLPQKGITPNAITYNTLIDGLVKSGNVAEAMRLKEKM 636

Query: 378 LGIGVVADS 386
           +  G+V  S
Sbjct: 637 IEKGLVRGS 645



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 63/236 (26%), Positives = 126/236 (53%), Gaps = 1/236 (0%)

Query: 270 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG 329
           M+  +  PDV T + V+N +C+ G +++A+    +  +      + VT+ ++I G   +G
Sbjct: 1   MISFEVSPDVFTCSIVVNAYCRSGNVDKAMVFAKETESSLGLELNVVTYNSLINGYAMIG 60

Query: 330 RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTY 389
            + E +  + ++M +RG S  +VTY ++++G  +   +EEA+ VF  +    +VAD   Y
Sbjct: 61  DV-EGMTRVLRLMSERGVSRNVVTYTSLIKGYCKKGLMEEAEHVFELLKEKKLVADQHMY 119

Query: 390 AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449
            +++DG C + Q+ +A R  D+++      +  +  ++I G C+SG++ EA      + D
Sbjct: 120 GVLMDGYCRTGQIRDAVRVHDNMIEIGVRTNTTICNSLINGYCKSGQLVEAEQIFSRMND 179

Query: 450 SGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
             + P+   YN ++DG C+     EA ++  +M +  + P  +T+ IL K +   G
Sbjct: 180 WSLKPDHHTYNTLVDGYCRAGYVDEALKLCDQMCQKEVVPTVMTYNILLKGYSRIG 235



 Score = 41.6 bits (96), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 10/78 (12%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC L  V  A +L   +  +G  PN ++Y TLI G  ++G +  A ++ ++M   G    
Sbjct: 585 LCKLGNVDRAQRLLHKLPQKGITPNAITYNTLIDGLVKSGNVAEAMRLKEKMIEKG---- 640

Query: 64  SLTYSVLVRGVLRTRDVE 81
                 LVRG  +  DV+
Sbjct: 641 ------LVRGSDKQGDVD 652


>gi|356561776|ref|XP_003549154.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 567

 Score =  167 bits (424), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 128/490 (26%), Positives = 221/490 (45%), Gaps = 41/490 (8%)

Query: 13  AHKLFFDMKSRGH-VPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           A  L   + S G+ + +V +   LI+  CR  +  + + V   M   G+ P  +T + + 
Sbjct: 95  AISLIKTLHSLGYEIADVCTLNILINCLCRLRKTTLGFAVLGLMTKIGLEPTLVTLNTIA 154

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP 131
            G+                                   +V+ LC+ G  +      + M 
Sbjct: 155 NGLC----------------------------------IVNGLCKIGDTSGALESLKKMV 180

Query: 132 QGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKH-GGC 190
           +            ++D LC+ G    A  + Y M    + P++V+YN ++ GLC   GG 
Sbjct: 181 KRNLEPNVVVYNAILDGLCKRGLVGEALGLFYEMGVVNVEPNVVTYNCLIQGLCGEVGGW 240

Query: 191 MRAYQLLEEGI-QFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNI 249
                L  E + + G +P   T+ +LV G C E  L +A  ++ FM+           N 
Sbjct: 241 REGVGLFNEMVAEKGIVPDVQTFSILVNGFCKEGLLLRAESMVGFMIRIGVELNVVTYNS 300

Query: 250 YLRALCLIKNPTELLNVLVFMLQTQ--CQPDVITLNTVINGFCKMGRIEEALKVLNDMVA 307
            +   CL     E + V   M++    C P V+T N++I+G+CK+ ++ +A+ +L++MV 
Sbjct: 301 LISGYCLRNRMEEAVRVFDLMVREGEGCLPSVVTYNSLIHGWCKVKKVNKAMSLLSEMV- 359

Query: 308 GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRV 367
           GK   PD  T+T++I G   VG+   A  L +  M  +G  P + T   VL GL++    
Sbjct: 360 GKGLDPDVFTWTSLIGGFFEVGKPLAAKEL-FITMKDQGQVPILQTCAVVLDGLYKCWLD 418

Query: 368 EEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAM 427
            EA  +F  M   G+  D   Y I++DG+C+  +L++A++    ++      D+Y +  M
Sbjct: 419 SEAMTLFRAMEKSGLDLDIVIYNIMLDGMCKMGKLNDARKLLSFVLVKGLKIDSYTWNIM 478

Query: 428 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
           IKGLCR G + +A   L ++ ++G  PN   YNV + G  +      + + L+ M+  G 
Sbjct: 479 IKGLCREGLLDDAEELLRKMKENGCPPNKCSYNVFVQGLLRKYDISRSRKYLQIMKDKGF 538

Query: 488 NPDAVTWRIL 497
             DA T  +L
Sbjct: 539 PVDATTAELL 548



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 104/358 (29%), Positives = 176/358 (49%), Gaps = 39/358 (10%)

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
           +++ LC+ G   GA   +  M KR L P++V YN+I+ GLCK G    A  L  E     
Sbjct: 159 IVNGLCKIGDTSGALESLKKMVKRNLEPNVVVYNAILDGLCKRGLVGEALGLFYEMGVVN 218

Query: 205 YLPSEHTYKVLVEGLCGE-SDLEKARKVLQFMLSKKD-VDRTRICNIYLRALCLIKNPTE 262
             P+  TY  L++GLCGE     +   +   M+++K  V   +  +I +   C       
Sbjct: 219 VEPNVVTYNCLIQGLCGEVGGWREGVGLFNEMVAEKGIVPDVQTFSILVNGFCKEGLLLR 278

Query: 263 LLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV-AGKFCAPDAVTFTTI 321
             +++ FM++   + +V+T N++I+G+C   R+EEA++V + MV  G+ C P  VT+ ++
Sbjct: 279 AESMVGFMIRIGVELNVVTYNSLISGYCLRNRMEEAVRVFDLMVREGEGCLPSVVTYNSL 338

Query: 322 IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG 381
           I G   V ++ +A++LL + M  +G  P + T+ +++ G F + +   AKE+F  M   G
Sbjct: 339 IHGWCKVKKVNKAMSLLSE-MVGKGLDPDVFTWTSLIGGFFEVGKPLAAKELFITMKDQG 397

Query: 382 VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAV 441
            V    T A+V+DGL          + W D                           EA+
Sbjct: 398 QVPILQTCAVVLDGL---------YKCWLD--------------------------SEAM 422

Query: 442 HFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
                +  SG+  +IV YN+++DG CK+    +A ++L  +   GL  D+ TW I+ K
Sbjct: 423 TLFRAMEKSGLDLDIVIYNIMLDGMCKMGKLNDARKLLSFVLVKGLKIDSYTWNIMIK 480



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 110/407 (27%), Positives = 185/407 (45%), Gaps = 8/407 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC +     A +    M  R   PNVV Y  ++ G C+ G +  A  +F EM    V
Sbjct: 160 VNGLCKIGDTSGALESLKKMVKRNLEPNVVVYNAILDGLCKRGLVGEALGLFYEMGVVNV 219

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +TY+ L++G+       R  V +F     M  E+ +  +   F+ LV+  C+EG +
Sbjct: 220 EPNVVTYNCLIQGLCGEVGGWREGVGLF---NEMVAEKGIVPDVQTFSILVNGFCKEGLL 276

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRK--RGLTPSLVSYN 178
                +   M +            +I   C   R   A RV  +M +   G  PS+V+YN
Sbjct: 277 LRAESMVGFMIRIGVELNVVTYNSLISGYCLRNRMEEAVRVFDLMVREGEGCLPSVVTYN 336

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
           S++HG CK     +A  LL E +  G  P   T+  L+ G         A+++   M  +
Sbjct: 337 SLIHGWCKVKKVNKAMSLLSEMVGKGLDPDVFTWTSLIGGFFEVGKPLAAKELFITMKDQ 396

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
             V   + C + L  L      +E + +   M ++    D++  N +++G CKMG++ +A
Sbjct: 397 GQVPILQTCAVVLDGLYKCWLDSEAMTLFRAMEKSGLDLDIVIYNIMLDGMCKMGKLNDA 456

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
            K+L+  V  K    D+ T+  +I GL   G + +A  LL + M + G  P   +YN  +
Sbjct: 457 RKLLS-FVLVKGLKIDSYTWNIMIKGLCREGLLDDAEELLRK-MKENGCPPNKCSYNVFV 514

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA 405
           +GL R   +  +++    M   G   D+TT  ++I  L  +N+ D A
Sbjct: 515 QGLLRKYDISRSRKYLQIMKDKGFPVDATTAELLIRFL-SANEEDNA 560



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 109/229 (47%), Gaps = 5/229 (2%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C + +V +A  L  +M  +G  P+V ++T+LI G+   G+   A ++F  M+  G +P  
Sbjct: 343 CKVKKVNKAMSLLSEMVGKGLDPDVFTWTSLIGGFFEVGKPLAAKELFITMKDQGQVPIL 402

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
            T +V++ G+ +   ++   + +F+  E+   + D+ + N     ++D +C+ G +N+  
Sbjct: 403 QTCAVVLDGLYKCW-LDSEAMTLFRAMEKSGLDLDIVIYNI----MLDGMCKMGKLNDAR 457

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
           ++   +       + +    MI  LCR G    A  ++  M++ G  P+  SYN  V GL
Sbjct: 458 KLLSFVLVKGLKIDSYTWNIMIKGLCREGLLDDAEELLRKMKENGCPPNKCSYNVFVQGL 517

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQ 233
            +     R+ + L+     G+     T ++L+  L    +    ++ LQ
Sbjct: 518 LRKYDISRSRKYLQIMKDKGFPVDATTAELLIRFLSANEEDNAFQEFLQ 566


>gi|242047668|ref|XP_002461580.1| hypothetical protein SORBIDRAFT_02g005000 [Sorghum bicolor]
 gi|241924957|gb|EER98101.1| hypothetical protein SORBIDRAFT_02g005000 [Sorghum bicolor]
          Length = 532

 Score =  167 bits (424), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 125/502 (24%), Positives = 226/502 (45%), Gaps = 36/502 (7%)

Query: 4   LCGLSRVGEAHKLFFDMKSR-GHVPNVVSYTTLIHGYCRTGE----MDVAYKVFDEMRHC 58
           LC   R  +A  +      + G  P+V SYT L+ G C   +    +D+ + + ++  HC
Sbjct: 58  LCAEKRTSDAMNIVIRWTPKLGCTPDVFSYTVLLKGLCDEKKCEEAVDLIHMMAEDGDHC 117

Query: 59  GVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREG 118
              PN ++Y+ ++ G  +  +V +A  L  ++ +R    + ++ N+     ++D LC+  
Sbjct: 118 P--PNVVSYTTVIHGFFKEDEVGKAYTLFCEMLDRGIPPDVVTCNS-----IIDGLCKVQ 170

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
            +++   +   M     + +      ++     SG+   A R++  M + G  P+ V+Y+
Sbjct: 171 AMDKAEEVLRQMFDKHIMPDCTTYNSLVHGYLSSGQLKEAVRILKQMSRHGQPPNGVTYS 230

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
            ++  LCK GG   A ++L   IQ    P+  TY  L+ G   + DL +   ++  M+  
Sbjct: 231 MLIDCLCKFGGHTEAREILNSMIQSRGNPNVATYGGLLHGYATKGDLVEMNNLIDLMVQN 290

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
                  I NI + A        E +     M Q    PD+I+  T+I+G CK+GR++ A
Sbjct: 291 GVRPDHHIFNIQIYAYVKCGRLDEAMLTFNKMRQQGLMPDIISYGTMIDGLCKIGRLDAA 350

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
           +     M+     +PD V FT +I G    G+ ++A  L Y++M  RG  P +V +  ++
Sbjct: 351 MSQFCQMIDDGL-SPDIVVFTNLIHGFSMYGKWEKAEELFYEMM-DRGIRPTVVVFTTMI 408

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
             LF+  +V EAK +F+ M    V  +  +Y  +I G   + +LDE  +  DD++     
Sbjct: 409 DKLFKEGKVTEAKTLFDLMPIASVKPNVVSYNAIIHGYFLAGKLDEVLKLLDDML----- 463

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHF---LYELVDSGVTPNIVCYNVVIDGACKLSMKREA 475
                           G    AV F   L +++  G+ P++   N +ID  C+     + 
Sbjct: 464 --------------SVGLKPNAVTFNTLLDDMLSMGLKPDVATCNTLIDSCCEDGRIEDV 509

Query: 476 YQILREMRKNGLNPDAVTWRIL 497
             + REM       D VT  I+
Sbjct: 510 LTLFREMLSKAAKTDTVTENII 531



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 142/296 (47%), Gaps = 11/296 (3%)

Query: 207 PSEHTYKVLVEGLCGESDLEKA----RKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTE 262
           P+  TY +L+   C    L  A     ++++  L    +  T I    LR LC  K  ++
Sbjct: 11  PTTVTYTILISCCCYVGCLNLAFAALGQIIKTGLRANAISFTPI----LRTLCAEKRTSD 66

Query: 263 LLNVLV-FMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA-GKFCAPDAVTFTT 320
            +N+++ +  +  C PDV +   ++ G C   + EEA+ +++ M   G  C P+ V++TT
Sbjct: 67  AMNIVIRWTPKLGCTPDVFSYTVLLKGLCDEKKCEEAVDLIHMMAEDGDHCPPNVVSYTT 126

Query: 321 IIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI 380
           +I G      + +A  L  +++  RG  P +VT N+++ GL +++ +++A+EV   M   
Sbjct: 127 VIHGFFKEDEVGKAYTLFCEML-DRGIPPDVVTCNSIIDGLCKVQAMDKAEEVLRQMFDK 185

Query: 381 GVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEA 440
            ++ D TTY  ++ G   S QL EA R    +       +   Y+ +I  LC+ G   EA
Sbjct: 186 HIMPDCTTYNSLVHGYLSSGQLKEAVRILKQMSRHGQPPNGVTYSMLIDCLCKFGGHTEA 245

Query: 441 VHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRI 496
              L  ++ S   PN+  Y  ++ G        E   ++  M +NG+ PD   + I
Sbjct: 246 REILNSMIQSRGNPNVATYGGLLHGYATKGDLVEMNNLIDLMVQNGVRPDHHIFNI 301



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 90/392 (22%), Positives = 172/392 (43%), Gaps = 23/392 (5%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC +  + +A ++   M  +  +P+  +Y +L+HGY  +G++  A ++  +M   G 
Sbjct: 163 IDGLCKVQAMDKAEEVLRQMFDKHIMPDCTTYNSLVHGYLSSGQLKEAVRILKQMSRHGQ 222

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +TYS+L+  + +      A  ++  + +          N A +  L+     +G +
Sbjct: 223 PPNGVTYSMLIDCLCKFGGHTEAREILNSMIQSRGNP-----NVATYGGLLHGYATKGDL 277

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E+  + + M Q     +       I +  + GR   A      MR++GL P ++SY ++
Sbjct: 278 VEMNNLIDLMVQNGVRPDHHIFNIQIYAYVKCGRLDEAMLTFNKMRQQGLMPDIISYGTM 337

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + GLCK G    A     + I  G  P    +  L+ G       EKA ++   M+ +  
Sbjct: 338 IDGLCKIGRLDAAMSQFCQMIDDGLSPDIVVFTNLIHGFSMYGKWEKAEELFYEMMDRGI 397

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                +    +  L      TE   +   M     +P+V++ N +I+G+   G+++E LK
Sbjct: 398 RPTVVVFTTMIDKLFKEGKVTEAKTLFDLMPIASVKPNVVSYNAIIHGYFLAGKLDEVLK 457

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +L+DM++     P+AVTF T++  +L++                 G  P + T N ++  
Sbjct: 458 LLDDMLSVGL-KPNAVTFNTLLDDMLSM-----------------GLKPDVATCNTLIDS 499

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIV 392
                R+E+   +F  ML      D+ T  I+
Sbjct: 500 CCEDGRIEDVLTLFREMLSKAAKTDTVTENII 531


>gi|255585033|ref|XP_002533225.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526957|gb|EEF29157.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 605

 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 124/500 (24%), Positives = 223/500 (44%), Gaps = 39/500 (7%)

Query: 27  PNVVSYTTLIHGYCRTGEMDVAY---KVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERA 83
           PN+++  TLI    R       Y    +F ++   GV  N+ T+++L+ G      +  A
Sbjct: 8   PNLLTLNTLIKALVRYPSKPSVYLSKAIFSDVIKLGVEVNTNTFNILICGCCIENKLSEA 67

Query: 84  NVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACG 143
             L+ K+     +      +N ++  ++D LC++G +NE   +  DM             
Sbjct: 68  IGLIGKM-----KHFSCFPDNVSYNTILDVLCKKGKLNEARDLLLDMKNNGLFPNRNTFN 122

Query: 144 HMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQF 203
            ++   C+ G    A+ V+ +M +  + P + +Y +++ GLCK G    A++L +E    
Sbjct: 123 ILVSGYCKLGWLKEAAEVIDIMARNNVLPDVRTYTTLIGGLCKDGKIDEAFRLRDEMENL 182

Query: 204 GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTEL 263
             LP   TY +L+ G    S   K  +++  M  K         N+ ++           
Sbjct: 183 KLLPHVVTYNMLINGCFECSSSLKGFELIDEMEGKGVKPNAVTYNVVVKWYVKEGKMDNA 242

Query: 264 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF 323
            N L  M ++   PD +T NT+ NG+CK GR+ EA +++++M + K    ++VT  TI+ 
Sbjct: 243 GNELRKMEESGFSPDCVTFNTLSNGYCKAGRLSEAFRMMDEM-SRKGLKMNSVTLNTILH 301

Query: 324 GLLNVGRIQEALNLL------------------------------YQVMPQRGYSPGIVT 353
            L    ++ +A  LL                              +  M ++   P I+T
Sbjct: 302 TLCGERKLDDAYKLLSSASKRGYFVDEVSYGTLIMGYFKVGKSXXWDEMKEKEIIPSIIT 361

Query: 354 YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413
           Y  ++ GL R  + +++ +  N +L  G+V D TTY  +I G C   Q+D+A  F + +V
Sbjct: 362 YGTMIGGLCRSGKTDQSIDKCNELLESGLVPDQTTYNTIILGYCREGQVDKAFHFRNKMV 421

Query: 414 WPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKR 473
             S   D +    +++GLC  G + +A+      +  G   + V +N +I G C+     
Sbjct: 422 KKSFKPDLFTCNILVRGLCTEGMLDKALKLFKTWISKGKAIDAVTFNTIISGLCEEGRFE 481

Query: 474 EAYQILREMRKNGLNPDAVT 493
           EA+ +L EM +  L PD  T
Sbjct: 482 EAFDLLAEMEEKKLGPDCYT 501



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 124/513 (24%), Positives = 238/513 (46%), Gaps = 40/513 (7%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC   ++ EA  L  DMK+ G  PN  ++  L+ GYC+ G +  A +V D M    V
Sbjct: 90  LDVLCKKGKLNEARDLLLDMKNNGLFPNRNTFNILVSGYCKLGWLKEAAEVIDIMARNNV 149

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           LP+  TY+ L+ G+ +   ++ A    F+L + M E   L  +   +  L++        
Sbjct: 150 LPDVRTYTTLIGGLCKDGKIDEA----FRLRDEM-ENLKLLPHVVTYNMLINGCFECSSS 204

Query: 121 NEVFRIAEDMPQGKSVNEEFACGH-MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
            + F + ++M +GK V       + ++    + G+   A   +  M + G +P  V++N+
Sbjct: 205 LKGFELIDEM-EGKGVKPNAVTYNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNT 263

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           + +G CK G    A+++++E  + G   +  T   ++  LCGE  L+ A K+L    SK+
Sbjct: 264 LSNGYCKAGRLSEAFRMMDEMSRKGLKMNSVTLNTILHTLCGERKLDDAYKLLS-SASKR 322

Query: 240 D--VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
              VD      + +    + K+          M + +  P +IT  T+I G C+ G+ ++
Sbjct: 323 GYFVDEVSYGTLIMGYFKVGKSXX-----WDEMKEKEIIPSIITYGTMIGGLCRSGKTDQ 377

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
           ++   N+++      PD  T+ TII G    G++ +A +   + M ++ + P + T N +
Sbjct: 378 SIDKCNELLESGL-VPDQTTYNTIILGYCREGQVDKAFHFRNK-MVKKSFKPDLFTCNIL 435

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 417
           +RGL     +++A ++F   +  G   D+ T+  +I GLCE  + +EA     ++     
Sbjct: 436 VRGLCTEGMLDKALKLFKTWISKGKAIDAVTFNTIISGLCEEGRFEEAFDLLAEMEEKKL 495

Query: 418 IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG-----------------------VTP 454
             D Y + A++  L  +G++ EA  F+  +V+ G                         P
Sbjct: 496 GPDCYTHNAILSALADAGRMKEAEEFMSGIVEQGKLQDQTISLNKRKTESSSETSQESDP 555

Query: 455 NIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
           N V ++  I+  C     ++A  +++E  + G+
Sbjct: 556 NSVAFSEQINELCTQGKYKDAMHMIQESTQKGI 588



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 121/492 (24%), Positives = 224/492 (45%), Gaps = 44/492 (8%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C L  + EA ++   M     +P+V +YTTLI G C+ G++D A+++ DEM +  +LP+ 
Sbjct: 129 CKLGWLKEAAEVIDIMARNNVLPDVRTYTTLIGGLCKDGKIDEAFRLRDEMENLKLLPHV 188

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           +TY++L+ G        +     F+L + M E + +  N   +  +V    +EG ++   
Sbjct: 189 VTYNMLINGCFECSSSLKG----FELIDEM-EGKGVKPNAVTYNVVVKWYVKEGKMDNAG 243

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
                M +     +      + +  C++GR   A R++  M ++GL  + V+ N+I+H L
Sbjct: 244 NELRKMEESGFSPDCVTFNTLSNGYCKAGRLSEAFRMMDEMSRKGLKMNSVTLNTILHTL 303

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGL--CGES---DLEKARKVLQFMLSKK 239
           C       AY+LL    + GY   E +Y  L+ G    G+S   D  K ++++  +++  
Sbjct: 304 CGERKLDDAYKLLSSASKRGYFVDEVSYGTLIMGYFKVGKSXXWDEMKEKEIIPSIITY- 362

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                      +  LC      + ++    +L++   PD  T NT+I G+C+ G++++A 
Sbjct: 363 --------GTMIGGLCRSGKTDQSIDKCNELLESGLVPDQTTYNTIILGYCREGQVDKAF 414

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
              N MV   F  PD  T   ++ GL   G + +AL L ++    +G +   VT+N ++ 
Sbjct: 415 HFRNKMVKKSF-KPDLFTCNILVRGLCTEGMLDKALKL-FKTWISKGKAIDAVTFNTIIS 472

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
           GL    R EEA ++   M    +  D  T+  ++  L ++ ++ EA+ F   IV    + 
Sbjct: 473 GLCEEGRFEEAFDLLAEMEEKKLGPDCYTHNAILSALADAGRMKEAEEFMSGIVEQGKLQ 532

Query: 420 DNYV-----------------------YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNI 456
           D  +                       ++  I  LC  GK  +A+H + E    G+  + 
Sbjct: 533 DQTISLNKRKTESSSETSQESDPNSVAFSEQINELCTQGKYKDAMHMIQESTQKGIILHK 592

Query: 457 VCYNVVIDGACK 468
             Y  +++G  K
Sbjct: 593 STYISLMEGLIK 604



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 117/238 (49%), Gaps = 3/238 (1%)

Query: 270 MLQTQCQPDVITLNTVINGFCKMGRIEEAL--KVLNDMVAGKFCAPDAVTFTTIIFGLLN 327
           M +   +P+++TLNT+I    +          K +   V       +  TF  +I G   
Sbjct: 1   MKRLHLKPNLLTLNTLIKALVRYPSKPSVYLSKAIFSDVIKLGVEVNTNTFNILICGCCI 60

Query: 328 VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADST 387
             ++ EA+ L+ + M      P  V+YN +L  L +  ++ EA+++   M   G+  +  
Sbjct: 61  ENKLSEAIGLIGK-MKHFSCFPDNVSYNTILDVLCKKGKLNEARDLLLDMKNNGLFPNRN 119

Query: 388 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYEL 447
           T+ I++ G C+   L EA    D +   + + D   Y  +I GLC+ GKI EA     E+
Sbjct: 120 TFNILVSGYCKLGWLKEAAEVIDIMARNNVLPDVRTYTTLIGGLCKDGKIDEAFRLRDEM 179

Query: 448 VDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505
            +  + P++V YN++I+G  + S   + ++++ EM   G+ P+AVT+ ++ K +   G
Sbjct: 180 ENLKLLPHVVTYNMLINGCFECSSSLKGFELIDEMEGKGVKPNAVTYNVVVKWYVKEG 237


>gi|186478651|ref|NP_173362.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806505|sp|Q9LN69.2|PPR50_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g19290
 gi|332191705|gb|AEE29826.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 904

 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 132/554 (23%), Positives = 243/554 (43%), Gaps = 85/554 (15%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRT-- 77
           M  RG   NVV+YT+LI GYC+ G M+ A  VF+ ++   ++ +   Y VL+ G  RT  
Sbjct: 287 MSERGVSRNVVTYTSLIKGYCKKGLMEEAEHVFELLKEKKLVADQHMYGVLMDGYCRTGQ 346

Query: 78  -RDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSV 136
            RD  R +  M ++  R         N     +L++  C+ G + E  +I   M      
Sbjct: 347 IRDAVRVHDNMIEIGVR--------TNTTICNSLINGYCKSGQLVEAEQIFSRMNDWSLK 398

Query: 137 NEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQL 196
            +      ++D  CR+G    A ++   M ++ + P++++YN ++ G  + G       L
Sbjct: 399 PDHHTYNTLVDGYCRAGYVDEALKLCDQMCQKEVVPTVMTYNILLKGYSRIGAFHDVLSL 458

Query: 197 LEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCL 256
            +  ++ G    E +   L+E L    D  +A K+ + +L++  +  T   N+ +  LC 
Sbjct: 459 WKMMLKRGVNADEISCSTLLEALFKLGDFNEAMKLWENVLARGLLTDTITLNVMISGLCK 518

Query: 257 IKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV--------------- 301
           ++   E   +L  +   +C+P V T   + +G+ K+G ++EA  V               
Sbjct: 519 MEKVNEAKEILDNVNIFRCKPAVQTYQALSHGYYKVGNLKEAFAVKEYMERKGIFPTIEM 578

Query: 302 LNDMVAGKF-------------------CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVM 342
            N +++G F                     P   T+  +I G  N+G I +A    ++ M
Sbjct: 579 YNTLISGAFKYRHLNKVADLVIELRARGLTPTVATYGALITGWCNIGMIDKAYATCFE-M 637

Query: 343 PQRGYSPGIVTYNAVLRGLFRLRRVEEA-------------------------------- 370
            ++G +  +   + +   LFRL +++EA                                
Sbjct: 638 IEKGITLNVNICSKIANSLFRLDKIDEACLLLQKIVDFDLLLPGYQSLKEFLEASATTCL 697

Query: 371 ------KEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN-IHDNYV 423
                 + V N      +V ++  Y + I GLC++ +L++A++ + D++     I D Y 
Sbjct: 698 KTQKIAESVENSTPKKLLVPNNIVYNVAIAGLCKAGKLEDARKLFSDLLSSDRFIPDEYT 757

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y  +I G   +G I++A     E+   G+ PNIV YN +I G CKL     A ++L ++ 
Sbjct: 758 YTILIHGCAIAGDINKAFTLRDEMALKGIIPNIVTYNALIKGLCKLGNVDRAQRLLHKLP 817

Query: 484 KNGLNPDAVTWRIL 497
           + G+ P+A+T+  L
Sbjct: 818 QKGITPNAITYNTL 831



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 129/556 (23%), Positives = 240/556 (43%), Gaps = 79/556 (14%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C    + EA  +F  +K +  V +   Y  L+ GYCRTG++  A +V D M   GV  N+
Sbjct: 307 CKKGLMEEAEHVFELLKEKKLVADQHMYGVLMDGYCRTGQIRDAVRVHDNMIEIGVRTNT 366

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
              + L+ G  ++  +  A     +++ RM +   L  ++  +  LVD  CR GYV+E  
Sbjct: 367 TICNSLINGYCKSGQLVEAE----QIFSRMNDW-SLKPDHHTYNTLVDGYCRAGYVDEAL 421

Query: 125 RIAEDMPQGKSV-----------------------------------NEEFACGHMIDSL 149
           ++ + M Q + V                                    +E +C  ++++L
Sbjct: 422 KLCDQMCQKEVVPTVMTYNILLKGYSRIGAFHDVLSLWKMMLKRGVNADEISCSTLLEAL 481

Query: 150 CRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSE 209
            + G  + A ++   +  RGL    ++ N ++ GLCK      A ++L+    F   P+ 
Sbjct: 482 FKLGDFNEAMKLWENVLARGLLTDTITLNVMISGLCKMEKVNEAKEILDNVNIFRCKPAV 541

Query: 210 HTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVF 269
            TY+ L  G     +L++A  V ++M  K       + N  +      ++  ++ ++++ 
Sbjct: 542 QTYQALSHGYYKVGNLKEAFAVKEYMERKGIFPTIEMYNTLISGAFKYRHLNKVADLVIE 601

Query: 270 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG 329
           +      P V T   +I G+C +G I++A     +M+  K    +    + I   L  + 
Sbjct: 602 LRARGLTPTVATYGALITGWCNIGMIDKAYATCFEMIE-KGITLNVNICSKIANSLFRLD 660

Query: 330 RIQEALNLLYQVM-------------------------------------PQRGYSPGIV 352
           +I EA  LL +++                                     P++   P  +
Sbjct: 661 KIDEACLLLQKIVDFDLLLPGYQSLKEFLEASATTCLKTQKIAESVENSTPKKLLVPNNI 720

Query: 353 TYNAVLRGLFRLRRVEEAKEVFNCMLGIG-VVADSTTYAIVIDGLCESNQLDEAKRFWDD 411
            YN  + GL +  ++E+A+++F+ +L     + D  TY I+I G   +  +++A    D+
Sbjct: 721 VYNVAIAGLCKAGKLEDARKLFSDLLSSDRFIPDEYTYTILIHGCAIAGDINKAFTLRDE 780

Query: 412 IVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSM 471
           +     I +   Y A+IKGLC+ G +  A   L++L   G+TPN + YN +IDG  K   
Sbjct: 781 MALKGIIPNIVTYNALIKGLCKLGNVDRAQRLLHKLPQKGITPNAITYNTLIDGLVKSGN 840

Query: 472 KREAYQILREMRKNGL 487
             EA ++  +M + GL
Sbjct: 841 VAEAMRLKEKMIEKGL 856



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 120/463 (25%), Positives = 215/463 (46%), Gaps = 17/463 (3%)

Query: 27  PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHC-GVLPNSLTYSVLVRGVLRTRDVERANV 85
           P+V + + +++ YCR+G +D A     E     G+  N +TY+ L+ G     DVE    
Sbjct: 223 PDVFTCSIVVNAYCRSGNVDKAMVFAKETESSLGLELNVVTYNSLINGYAMIGDVEGMTR 282

Query: 86  LMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHM 145
           ++     R+  E  +S N   + +L+   C++G + E   + E + + K V ++   G +
Sbjct: 283 VL-----RLMSERGVSRNVVTYTSLIKGYCKKGLMEEAEHVFELLKEKKLVADQHMYGVL 337

Query: 146 IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY 205
           +D  CR+G+   A RV   M + G+  +    NS+++G CK G  + A Q+      +  
Sbjct: 338 MDGYCRTGQIRDAVRVHDNMIEIGVRTNTTICNSLINGYCKSGQLVEAEQIFSRMNDWSL 397

Query: 206 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 265
            P  HTY  LV+G C    +++A K+   M  K+ V      NI L+    I    ++L+
Sbjct: 398 KPDHHTYNTLVDGYCRAGYVDEALKLCDQMCQKEVVPTVMTYNILLKGYSRIGAFHDVLS 457

Query: 266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 325
           +   ML+     D I+ +T++    K+G   EA+K+  +++A +    D +T   +I GL
Sbjct: 458 LWKMMLKRGVNADEISCSTLLEALFKLGDFNEAMKLWENVLA-RGLLTDTITLNVMISGL 516

Query: 326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 385
             + ++ EA  +L  V   R   P + TY A+  G +++  ++EA  V   M   G+   
Sbjct: 517 CKMEKVNEAKEILDNVNIFRC-KPAVQTYQALSHGYYKVGNLKEAFAVKEYMERKGIFPT 575

Query: 386 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY 445
              Y  +I G  +   L++      ++           Y A+I G C  G I +A    +
Sbjct: 576 IEMYNTLISGAFKYRHLNKVADLVIELRARGLTPTVATYGALITGWCNIGMIDKAYATCF 635

Query: 446 ELVDSGVTPNI-VCYNVV--------IDGACKLSMKREAYQIL 479
           E+++ G+T N+ +C  +         ID AC L  K   + +L
Sbjct: 636 EMIEKGITLNVNICSKIANSLFRLDKIDEACLLLQKIVDFDLL 678



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 117/488 (23%), Positives = 217/488 (44%), Gaps = 48/488 (9%)

Query: 11  GEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVL 70
           GE  ++F   K     P V  +  ++  Y   G +  A  VFD M + G +P+ L+ + L
Sbjct: 142 GELVRVF---KEFSFSPTV--FDMILKVYAEKGLVKNALHVFDNMGNYGRIPSLLSCNSL 196

Query: 71  VRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDM 130
           +  ++R  +    N +   ++++M   E +S +    + +V++ CR G V++    A++ 
Sbjct: 197 LSNLVRKGE----NFVALHVYDQMISFE-VSPDVFTCSIVVNAYCRSGNVDKAMVFAKET 251

Query: 131 PQGKSVNEEFAC-GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG 189
                +         +I+     G   G +RV+ +M +RG++ ++V+Y S++ G CK G 
Sbjct: 252 ESSLGLELNVVTYNSLINGYAMIGDVEGMTRVLRLMSERGVSRNVVTYTSLIKGYCKKGL 311

Query: 190 CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNI 249
              A  + E   +   +  +H Y VL++G C    +  A +V   M+       T ICN 
Sbjct: 312 MEEAEHVFELLKEKKLVADQHMYGVLMDGYCRTGQIRDAVRVHDNMIEIGVRTNTTICN- 370

Query: 250 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK 309
                                             ++ING+CK G++ EA ++ + M    
Sbjct: 371 ----------------------------------SLINGYCKSGQLVEAEQIFSRMNDWS 396

Query: 310 FCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEE 369
              PD  T+ T++ G    G + EAL L  Q M Q+   P ++TYN +L+G  R+    +
Sbjct: 397 L-KPDHHTYNTLVDGYCRAGYVDEALKLCDQ-MCQKEVVPTVMTYNILLKGYSRIGAFHD 454

Query: 370 AKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIK 429
              ++  ML  GV AD  + + +++ L +    +EA + W++++    + D      MI 
Sbjct: 455 VLSLWKMMLKRGVNADEISCSTLLEALFKLGDFNEAMKLWENVLARGLLTDTITLNVMIS 514

Query: 430 GLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNP 489
           GLC+  K++EA   L  +      P +  Y  +  G  K+   +EA+ +   M + G+ P
Sbjct: 515 GLCKMEKVNEAKEILDNVNIFRCKPAVQTYQALSHGYYKVGNLKEAFAVKEYMERKGIFP 574

Query: 490 DAVTWRIL 497
               +  L
Sbjct: 575 TIEMYNTL 582



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 129/242 (53%), Gaps = 1/242 (0%)

Query: 264 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF 323
           L+V   M+  +  PDV T + V+N +C+ G +++A+    +  +      + VT+ ++I 
Sbjct: 210 LHVYDQMISFEVSPDVFTCSIVVNAYCRSGNVDKAMVFAKETESSLGLELNVVTYNSLIN 269

Query: 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 383
           G   +G + E +  + ++M +RG S  +VTY ++++G  +   +EEA+ VF  +    +V
Sbjct: 270 GYAMIGDV-EGMTRVLRLMSERGVSRNVVTYTSLIKGYCKKGLMEEAEHVFELLKEKKLV 328

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
           AD   Y +++DG C + Q+ +A R  D+++      +  +  ++I G C+SG++ EA   
Sbjct: 329 ADQHMYGVLMDGYCRTGQIRDAVRVHDNMIEIGVRTNTTICNSLINGYCKSGQLVEAEQI 388

Query: 444 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGN 503
              + D  + P+   YN ++DG C+     EA ++  +M +  + P  +T+ IL K +  
Sbjct: 389 FSRMNDWSLKPDHHTYNTLVDGYCRAGYVDEALKLCDQMCQKEVVPTVMTYNILLKGYSR 448

Query: 504 RG 505
            G
Sbjct: 449 IG 450



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 112/489 (22%), Positives = 195/489 (39%), Gaps = 112/489 (22%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C   ++ EA ++F  M      P+  +Y TL+ GYCR G +D A K+ D+M    V+P  
Sbjct: 377 CKSGQLVEAEQIFSRMNDWSLKPDHHTYNTLVDGYCRAGYVDEALKLCDQMCQKEVVPTV 436

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
           +TY++L++G  R          +  LW +M  +  ++ +  + + L+++L + G  NE  
Sbjct: 437 MTYNILLKGYSRIGAFHD----VLSLW-KMMLKRGVNADEISCSTLLEALFKLGDFNEAM 491

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGR--------------------------NHG- 157
           ++ E++     + +      MI  LC+  +                          +HG 
Sbjct: 492 KLWENVLARGLLTDTITLNVMISGLCKMEKVNEAKEILDNVNIFRCKPAVQTYQALSHGY 551

Query: 158 --------ASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSE 209
                   A  V   M ++G+ P++  YN+++ G  K+    +   L+ E    G  P+ 
Sbjct: 552 YKVGNLKEAFAVKEYMERKGIFPTIEMYNTLISGAFKYRHLNKVADLVIELRARGLTPTV 611

Query: 210 HTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRAL---------CLIKNP 260
            TY  L+ G C    ++KA      M+ K       IC+    +L         CL+   
Sbjct: 612 ATYGALITGWCNIGMIDKAYATCFEMIEKGITLNVNICSKIANSLFRLDKIDEACLLLQK 671

Query: 261 TELLNVLV--------FM-------LQTQ--------------CQPDVITLNTVINGFCK 291
               ++L+        F+       L+TQ                P+ I  N  I G CK
Sbjct: 672 IVDFDLLLPGYQSLKEFLEASATTCLKTQKIAESVENSTPKKLLVPNNIVYNVAIAGLCK 731

Query: 292 MGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNL-------------- 337
            G++E+A K+ +D+++     PD  T+T +I G    G I +A  L              
Sbjct: 732 AGKLEDARKLFSDLLSSDRFIPDEYTYTILIHGCAIAGDINKAFTLRDEMALKGIIPNIV 791

Query: 338 --------------------LYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCM 377
                               L   +PQ+G +P  +TYN ++ GL +   V EA  +   M
Sbjct: 792 TYNALIKGLCKLGNVDRAQRLLHKLPQKGITPNAITYNTLIDGLVKSGNVAEAMRLKEKM 851

Query: 378 LGIGVVADS 386
           +  G+V  S
Sbjct: 852 IEKGLVRGS 860



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 83/373 (22%), Positives = 152/373 (40%), Gaps = 48/373 (12%)

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKR---GLTPSLVSYNSIVHGLCKHG---GCMRA 193
           F C  ++++ CRSG    A  +V+        GL  ++V+YNS+++G    G   G  R 
Sbjct: 226 FTCSIVVNAYCRSGNVDKA--MVFAKETESSLGLELNVVTYNSLINGYAMIGDVEGMTRV 283

Query: 194 YQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRA 253
            +L+ E    G   +  TY  L++G C +  +E+A  V + +  KK V    +  + +  
Sbjct: 284 LRLMSER---GVSRNVVTYTSLIKGYCKKGLMEEAEHVFELLKEKKLVADQHMYGVLMDG 340

Query: 254 LCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAP 313
            C      + + V   M++   + +    N++ING+CK G++ EA ++            
Sbjct: 341 YCRTGQIRDAVRVHDNMIEIGVRTNTTICNSLINGYCKSGQLVEAEQI------------ 388

Query: 314 DAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEV 373
                                    +  M      P   TYN ++ G  R   V+EA ++
Sbjct: 389 -------------------------FSRMNDWSLKPDHHTYNTLVDGYCRAGYVDEALKL 423

Query: 374 FNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR 433
            + M    VV    TY I++ G        +    W  ++      D    + +++ L +
Sbjct: 424 CDQMCQKEVVPTVMTYNILLKGYSRIGAFHDVLSLWKMMLKRGVNADEISCSTLLEALFK 483

Query: 434 SGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVT 493
            G  +EA+     ++  G+  + +  NV+I G CK+    EA +IL  +      P   T
Sbjct: 484 LGDFNEAMKLWENVLARGLLTDTITLNVMISGLCKMEKVNEAKEILDNVNIFRCKPAVQT 543

Query: 494 WRILDKLHGNRGN 506
           ++ L   +   GN
Sbjct: 544 YQALSHGYYKVGN 556



 Score = 41.6 bits (96), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 10/78 (12%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC L  V  A +L   +  +G  PN ++Y TLI G  ++G +  A ++ ++M   G    
Sbjct: 800 LCKLGNVDRAQRLLHKLPQKGITPNAITYNTLIDGLVKSGNVAEAMRLKEKMIEKG---- 855

Query: 64  SLTYSVLVRGVLRTRDVE 81
                 LVRG  +  DV+
Sbjct: 856 ------LVRGSDKQGDVD 867


>gi|224061569|ref|XP_002300545.1| predicted protein [Populus trichocarpa]
 gi|222847803|gb|EEE85350.1| predicted protein [Populus trichocarpa]
          Length = 567

 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 120/462 (25%), Positives = 221/462 (47%), Gaps = 12/462 (2%)

Query: 23  RGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVER 82
           +GH P+V   T L++  C++ +M  A +V +     G++P++ +Y+ LV  + +  ++  
Sbjct: 91  KGHKPDVAQATQLLYDLCKSNKMKKATRVMEMTIESGIIPDAASYTFLVNNLCKRGNIGY 150

Query: 83  ANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFAC 142
           A     +L E+M EE     N   + +LV  LC+ G +N+  ++ + + +   V  EF  
Sbjct: 151 A----MQLVEKM-EENGCPTNTVTYNSLVRGLCKHGNLNQSLQLLDKLMRKGLVPNEFTH 205

Query: 143 GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQ 202
             ++++  +      A +++  +  +G  P+LVSYN ++ GLCK G    A Q   +   
Sbjct: 206 SFLLEAAYKERGVDEAMKLLDGIIAKGGKPNLVSYNVLLTGLCKEGRTEEAIQFFRDLPS 265

Query: 203 FGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTE 262
            G+ P+  +  +++  LC E   E+A +++  M S++        NI + +L        
Sbjct: 266 KGFNPNVVSCNIILRSLCCEGRWEEANELVAEMDSEERSPSLVTYNILIGSLASHGRIQH 325

Query: 263 LLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTII 322
              VL  M++   QP   T N +I+  CK G+ +  +K L+ M+    C P+  TF  I 
Sbjct: 326 AFQVLDEMMRASFQPSAATFNPIISHLCKEGKADLVVKCLDQMIH-HCCNPNDGTFNAIA 384

Query: 323 FGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGV 382
             L   GR+Q A +++ Q +  +  S     Y  V+  L R      A ++   M+  G 
Sbjct: 385 V-LCEGGRVQRAFSII-QSLGNKQNSSTHDFYRGVISSLCRKGNTYPAFQLLYEMIQSGF 442

Query: 383 VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV--YAAMIKGLCRSGKIHEA 440
           V D  TY+ +I GLC    LDEA   +   +   N +   +  + A+I G C+SG+   +
Sbjct: 443 VPDPYTYSSLIRGLCVEGMLDEALEIFR--LLEENDYRPILGNFNALILGFCKSGRTDLS 500

Query: 441 VHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
           +     ++  G TPN   Y ++++G      K  A ++L+E+
Sbjct: 501 LEIFEMMILKGYTPNETTYTILVEGIAHEEEKELAAEVLKEL 542



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 112/441 (25%), Positives = 204/441 (46%), Gaps = 24/441 (5%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC    +G A +L   M+  G   N V+Y +L+ G C+ G ++ + ++ D++   G+
Sbjct: 139 VNNLCKRGNIGYAMQLVEKMEENGCPTNTVTYNSLVRGLCKHGNLNQSLQLLDKLMRKGL 198

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +PN  T+S L+    + R V+ A  L+  +  +  +   +S N      L+  LC+EG  
Sbjct: 199 VPNEFTHSFLLEAAYKERGVDEAMKLLDGIIAKGGKPNLVSYN-----VLLTGLCKEGRT 253

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E  +   D+P         +C  ++ SLC  GR   A+ +V  M     +PSLV+YN +
Sbjct: 254 EEAIQFFRDLPSKGFNPNVVSCNIILRSLCCEGRWEEANELVAEMDSEERSPSLVTYNIL 313

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +  L  HG    A+Q+L+E ++  + PS  T+  ++  LC E   +   K L  M+    
Sbjct: 314 IGSLASHGRIQHAFQVLDEMMRASFQPSAATFNPIISHLCKEGKADLVVKCLDQMIH--- 370

Query: 241 VDRTRICNI------YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGR 294
                 CN        +  LC         +++  +   Q          VI+  C+ G 
Sbjct: 371 ----HCCNPNDGTFNAIAVLCEGGRVQRAFSIIQSLGNKQNSSTHDFYRGVISSLCRKGN 426

Query: 295 IEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTY 354
              A ++L +M+   F  PD  T++++I GL   G + EAL  +++++ +  Y P +  +
Sbjct: 427 TYPAFQLLYEMIQSGF-VPDPYTYSSLIRGLCVEGMLDEALE-IFRLLEENDYRPILGNF 484

Query: 355 NAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA----KRFWD 410
           NA++ G  +  R + + E+F  M+  G   + TTY I+++G+    + + A    K  + 
Sbjct: 485 NALILGFCKSGRTDLSLEIFEMMILKGYTPNETTYTILVEGIAHEEEKELAAEVLKELYI 544

Query: 411 DIVWPSNIHDNYVYAAMIKGL 431
             V   N  +  V    +KGL
Sbjct: 545 RQVMRRNTVERLVMQYDLKGL 565



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 90/369 (24%), Positives = 165/369 (44%), Gaps = 37/369 (10%)

Query: 163 YVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGE 222
           +++RK G  P +     +++ LCK     +A +++E  I+ G +P   +Y  LV  LC  
Sbjct: 87  FIVRK-GHKPDVAQATQLLYDLCKSNKMKKATRVMEMTIESGIIPDAASYTFLVNNLCKR 145

Query: 223 SDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITL 282
            ++  A ++++ M        T   N  +R LC   N  + L +L  +++    P+  T 
Sbjct: 146 GNIGYAMQLVEKMEENGCPTNTVTYNSLVRGLCKHGNLNQSLQLLDKLMRKGLVPNEFTH 205

Query: 283 NTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVM 342
           + ++    K   ++EA+K+L+ ++A K   P+ V++  ++ GL   GR +EA+   ++ +
Sbjct: 206 SFLLEAAYKERGVDEAMKLLDGIIA-KGGKPNLVSYNVLLTGLCKEGRTEEAIQ-FFRDL 263

Query: 343 PQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQL 402
           P +G++P +V+ N +LR L    R EEA E+   M          TY I+I  L    ++
Sbjct: 264 PSKGFNPNVVSCNIILRSLCCEGRWEEANELVAEMDSEERSPSLVTYNILIGSLASHGRI 323

Query: 403 DEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN------- 455
             A +  D+++  S       +  +I  LC+ GK    V  L +++     PN       
Sbjct: 324 QHAFQVLDEMMRASFQPSAATFNPIISHLCKEGKADLVVKCLDQMIHHCCNPNDGTFNAI 383

Query: 456 -IVC--------------------------YNVVIDGACKLSMKREAYQILREMRKNGLN 488
            ++C                          Y  VI   C+      A+Q+L EM ++G  
Sbjct: 384 AVLCEGGRVQRAFSIIQSLGNKQNSSTHDFYRGVISSLCRKGNTYPAFQLLYEMIQSGFV 443

Query: 489 PDAVTWRIL 497
           PD  T+  L
Sbjct: 444 PDPYTYSSL 452



 Score = 43.9 bits (102), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 53/113 (46%), Gaps = 3/113 (2%)

Query: 401 QLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYN 460
           +L++A    + IV   +  D      ++  LC+S K+ +A   +   ++SG+ P+   Y 
Sbjct: 77  RLNDAFFHLEFIVRKGHKPDVAQATQLLYDLCKSNKMKKATRVMEMTIESGIIPDAASYT 136

Query: 461 VVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK---LHGNRGNDFGL 510
            +++  CK      A Q++ +M +NG   + VT+  L +    HGN      L
Sbjct: 137 FLVNNLCKRGNIGYAMQLVEKMEENGCPTNTVTYNSLVRGLCKHGNLNQSLQL 189


>gi|5738362|emb|CAB52870.1| putative protein [Arabidopsis thaliana]
 gi|7268785|emb|CAB78991.1| putative protein [Arabidopsis thaliana]
          Length = 1302

 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 131/526 (24%), Positives = 221/526 (42%), Gaps = 119/526 (22%)

Query: 7    LSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLT 66
            + R+ EA  +  DM+++G  P+ ++   ++      G ++ A  VFDEM   GV+P+S +
Sbjct: 761  IGRLNEAVGMVMDMQNQGLTPSSITMNCVLEIAVELGLIEYAENVFDEMSVRGVVPDSSS 820

Query: 67   YSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRI 126
            Y ++V G  R                                        +G + E  R 
Sbjct: 821  YKLMVIGCFR----------------------------------------DGKIQEADRW 840

Query: 127  AEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKR---GLTPSLVSYNSIVHG 183
               M Q   + +   C  ++ +LC +G     +R ++  RK    G  P+L+++ S++ G
Sbjct: 841  LTGMIQRGFIPDNATCTLILTALCENGL---VNRAIWYFRKMIDLGFKPNLINFTSLIDG 897

Query: 184  LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            LCK G   +A+++LEE ++ G+ P+ +T+  L++GLC     EKA ++            
Sbjct: 898  LCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLF----------- 946

Query: 244  TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                      L L+++ T              +P+V T  ++I G+CK  ++  A  + +
Sbjct: 947  ----------LKLVRSDT-------------YKPNVHTYTSMIGGYCKEDKLNRAEMLFS 983

Query: 304  DMV-AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
             M   G F  P+  T+TT+I G    G    A  L+  +M   G+ P I TYNA +  L 
Sbjct: 984  RMKEQGLF--PNVNTYTTLINGHCKAGSFGRAYELM-NLMGDEGFMPNIYTYNAAIDSLC 1040

Query: 363  RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN---------------------- 400
            +  R  EA E+ N     G+ AD  TY I+I   C+ N                      
Sbjct: 1041 KKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQNDINQALAFFCRMNKTGFEADMR 1100

Query: 401  -------------QLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYEL 447
                         ++ E++R +  +V    I     Y +MI   C+ G I  A+ + + +
Sbjct: 1101 LNNILIAAFCRQKKMKESERLFQLVVSLGLIPTKETYTSMISCYCKEGDIDLALKYFHNM 1160

Query: 448  VDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVT 493
               G  P+   Y  +I G CK SM  EA ++   M   GL+P  VT
Sbjct: 1161 KRHGCVPDSFTYGSLISGLCKKSMVDEACKLYEAMIDRGLSPPEVT 1206



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 114/452 (25%), Positives = 198/452 (43%), Gaps = 16/452 (3%)

Query: 4    LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            LC    V  A   F  M   G  PN++++T+LI G C+ G +  A+++ +EM   G  PN
Sbjct: 863  LCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPN 922

Query: 64   SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
              T++ L+ G+ +    E+A    F+L+ ++   +    N   + +++   C+E  +N  
Sbjct: 923  VYTHTALIDGLCKRGWTEKA----FRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNRA 978

Query: 124  FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
              +   M +            +I+  C++G    A  ++ +M   G  P++ +YN+ +  
Sbjct: 979  EMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYELMNLMGDEGFMPNIYTYNAAIDS 1038

Query: 184  LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            LCK      AY+LL +    G      TY +L++  C ++D+ +A      M        
Sbjct: 1039 LCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQNDINQALAFFCRMNKTGFEAD 1098

Query: 244  TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
             R+ NI + A C  K   E   +   ++     P   T  ++I+ +CK G I+ ALK  +
Sbjct: 1099 MRLNNILIAAFCRQKKMKESERLFQLVVSLGLIPTKETYTSMISCYCKEGDIDLALKYFH 1158

Query: 304  DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            +M     C PD+ T+ ++I GL     + EA   LY+ M  RG SP  VT   V      
Sbjct: 1159 NM-KRHGCVPDSFTYGSLISGLCKKSMVDEACK-LYEAMIDRGLSPPEVT--RVTLAYEY 1214

Query: 364  LRRVEEAKEVFNCMLGIGVVADS---TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
             +R + A    N M+ +  +       T   ++  LC   ++  A  F+  ++   +  D
Sbjct: 1215 CKRNDSA----NAMILLEPLDKKLWIRTVRTLVRKLCSEKKVGVAALFFQKLLEKDSSAD 1270

Query: 421  NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGV 452
                AA       SGK +  V  L E +  GV
Sbjct: 1271 RVTLAAFTTACSESGK-NNLVTDLTERISRGV 1301



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 88/354 (24%), Positives = 157/354 (44%), Gaps = 38/354 (10%)

Query: 145  MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
            M+ +    GR + A  +V  M+ +GLTPS ++ N ++    + G    A  + +E    G
Sbjct: 754  MLRNFSEIGRLNEAVGMVMDMQNQGLTPSSITMNCVLEIAVELGLIEYAENVFDEMSVRG 813

Query: 205  YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL 264
             +P   +YK++V G   +  +++A + L  M+ +  +                       
Sbjct: 814  VVPDSSSYKLMVIGCFRDGKIQEADRWLTGMIQRGFI----------------------- 850

Query: 265  NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 324
                        PD  T   ++   C+ G +  A+     M+   F  P+ + FT++I G
Sbjct: 851  ------------PDNATCTLILTALCENGLVNRAIWYFRKMIDLGF-KPNLINFTSLIDG 897

Query: 325  LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 384
            L   G I++A  +L + M + G+ P + T+ A++ GL +    E+A  +F  ++      
Sbjct: 898  LCKKGSIKQAFEMLEE-MVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDTYK 956

Query: 385  DST-TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
             +  TY  +I G C+ ++L+ A+  +  +       +   Y  +I G C++G    A   
Sbjct: 957  PNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYEL 1016

Query: 444  LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            +  + D G  PNI  YN  ID  CK S   EAY++L +    GL  D VT+ IL
Sbjct: 1017 MNLMGDEGFMPNIYTYNAAIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTIL 1070



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 90/336 (26%), Positives = 144/336 (42%), Gaps = 26/336 (7%)

Query: 179  SIVHGLCKHGGCMRAYQLLEEGIQF-GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 237
            ++V  L    G M A       + F  +      Y V  + L    +L+KA +V++ ML 
Sbjct: 697  TVVASLASESGSMVALCFFYWAVGFEKFRHFMRLYLVTADSLLANGNLQKAHEVMRCML- 755

Query: 238  KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
                          R    I    E + +++ M      P  IT+N V+    ++G IE 
Sbjct: 756  --------------RNFSEIGRLNEAVGMVMDMQNQGLTPSSITMNCVLEIAVELGLIEY 801

Query: 298  ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
            A  V ++M   +   PD+ ++  ++ G    G+IQEA   L   M QRG+ P   T   +
Sbjct: 802  AENVFDEMSV-RGVVPDSSSYKLMVIGCFRDGKIQEADRWLTG-MIQRGFIPDNATCTLI 859

Query: 358  LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV---W 414
            L  L     V  A   F  M+ +G   +   +  +IDGLC+   + +A    +++V   W
Sbjct: 860  LTALCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGW 919

Query: 415  PSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGV-TPNIVCYNVVIDGACKLSMKR 473
              N+   Y + A+I GLC+ G   +A     +LV S    PN+  Y  +I G CK     
Sbjct: 920  KPNV---YTHTALIDGLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLN 976

Query: 474  EAYQILREMRKNGLNPDAVTWRILDKLHGNRGNDFG 509
             A  +   M++ GL P+  T+  L   H   G+ FG
Sbjct: 977  RAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGS-FG 1011


>gi|449458524|ref|XP_004146997.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Cucumis sativus]
          Length = 481

 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 109/403 (27%), Positives = 198/403 (49%), Gaps = 48/403 (11%)

Query: 105 AAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGR-NHGASRVVY 163
           ++F  L+  L +  + +++F +   M       + F    + + LC   R + G + +  
Sbjct: 91  SSFNRLLGGLAKINHYSQLFSLYNKMRLAGLSPDLFTLNILANCLCNLNRVSEGLAAMTG 150

Query: 164 VMRKRGLTPSLVSYNSIV---HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLC 220
           ++R RG  P +V+YN+++   +GLCK G    A ++ EE    G +P+  +Y  LV G C
Sbjct: 151 ILR-RGYIPDIVTYNTLIKGLYGLCKVGHEDEAKEIFEEMKAQGMIPNVISYSSLVHGFC 209

Query: 221 GESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVI 280
               LE+++++   M+ +                                     QP+++
Sbjct: 210 CAGKLEESKRLFNEMVDQG-----------------------------------VQPNLV 234

Query: 281 TLNTVINGFCKMGRI---EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNL 337
             N +I+  CK G+I     A K+   M   K C  + +++T +I G   + +++EA+NL
Sbjct: 235 QFNVLIDILCKEGKIGDLSSARKLFLSM-PSKGCEHNEISYTILINGYCKIWKVEEAMNL 293

Query: 338 LYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLC 397
            Y  MPQ G  P + TY+ +L GL +  +V +A ++F  M   G+  DS  Y I +DGLC
Sbjct: 294 -YNEMPQVGKRPNVKTYSTLLTGLLQTGKVGDANKLFGVMKASGISVDSCIYVIFLDGLC 352

Query: 398 ESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIV 457
           ++  L EA   ++++   +   D   Y+ +I GLC++GK+  A  F  +L   G+ PN+V
Sbjct: 353 KNGVLFEAMELFNELKSYNFKLDFESYSRLIDGLCKAGKVEIAWEFFKQLSQEGLQPNVV 412

Query: 458 CYNVVIDGACKLSMKREA---YQILREMRKNGLNPDAVTWRIL 497
             N++I G C++    +A   ++ + +M +NG  PD +T+  L
Sbjct: 413 TCNIMIHGFCRVEQVDKANILFEKMEKMEENGCTPDIITYNTL 455



 Score =  137 bits (346), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 87/312 (27%), Positives = 163/312 (52%), Gaps = 16/312 (5%)

Query: 4   LCGLSRVG---EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           L GL +VG   EA ++F +MK++G +PNV+SY++L+HG+C  G+++ + ++F+EM   GV
Sbjct: 170 LYGLCKVGHEDEAKEIFEEMKAQGMIPNVISYSSLVHGFCCAGKLEESKRLFNEMVDQGV 229

Query: 61  LPNSLTYSVLVRGVL---RTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCRE 117
            PN + ++VL+  +    +  D+  A  L   +  +  E  ++S     +  L++  C+ 
Sbjct: 230 QPNLVQFNVLIDILCKEGKIGDLSSARKLFLSMPSKGCEHNEIS-----YTILINGYCKI 284

Query: 118 GYVNEVFRIAEDMPQ-GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVS 176
             V E   +  +MPQ GK  N +     ++  L ++G+   A+++  VM+  G++     
Sbjct: 285 WKVEEAMNLYNEMPQVGKRPNVK-TYSTLLTGLLQTGKVGDANKLFGVMKASGISVDSCI 343

Query: 177 YNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFML 236
           Y   + GLCK+G    A +L  E   + +     +Y  L++GLC    +E A +  + + 
Sbjct: 344 YVIFLDGLCKNGVLFEAMELFNELKSYNFKLDFESYSRLIDGLCKAGKVEIAWEFFKQLS 403

Query: 237 SKKDVDRTRICNIYLRALCLIKNPTE---LLNVLVFMLQTQCQPDVITLNTVINGFCKMG 293
            +        CNI +   C ++   +   L   +  M +  C PD+IT NT++ GFC+  
Sbjct: 404 QEGLQPNVVTCNIMIHGFCRVEQVDKANILFEKMEKMEENGCTPDIITYNTLLRGFCESN 463

Query: 294 RIEEALKVLNDM 305
           ++EE + +L+ M
Sbjct: 464 KLEEVVNLLHKM 475



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 77/247 (31%), Positives = 130/247 (52%), Gaps = 17/247 (6%)

Query: 1   MDQLCGLSRVGE---AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRH 57
           +D LC   ++G+   A KLF  M S+G   N +SYT LI+GYC+  +++ A  +++EM  
Sbjct: 240 IDILCKEGKIGDLSSARKLFLSMPSKGCEHNEISYTILINGYCKIWKVEEAMNLYNEMPQ 299

Query: 58  CGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCRE 117
            G  PN  TYS L+ G+L+T  V  AN    KL+  MK    +SV++  +   +D LC+ 
Sbjct: 300 VGKRPNVKTYSTLLTGLLQTGKVGDAN----KLFGVMKAS-GISVDSCIYVIFLDGLCKN 354

Query: 118 GYVNEVFRIAEDMPQGKSVNEEF---ACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSL 174
           G + E   +  ++   KS N +    +   +ID LC++G+   A      + + GL P++
Sbjct: 355 GVLFEAMELFNEL---KSYNFKLDFESYSRLIDGLCKAGKVEIAWEFFKQLSQEGLQPNV 411

Query: 175 VSYNSIVHGLCKHGGCMRA---YQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKV 231
           V+ N ++HG C+     +A   ++ +E+  + G  P   TY  L+ G C  + LE+   +
Sbjct: 412 VTCNIMIHGFCRVEQVDKANILFEKMEKMEENGCTPDIITYNTLLRGFCESNKLEEVVNL 471

Query: 232 LQFMLSK 238
           L  M  +
Sbjct: 472 LHKMFKR 478



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 141/290 (48%), Gaps = 9/290 (3%)

Query: 221 GESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVI 280
           G  D+ +A      M+    +      N  L  L  I + ++L ++   M      PD+ 
Sbjct: 67  GNIDVIQAFHFFDLMMRSHPIPPISSFNRLLGGLAKINHYSQLFSLYNKMRLAGLSPDLF 126

Query: 281 TLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTII---FGLLNVGRIQEALNL 337
           TLN + N  C + R+ E L  +  ++   +  PD VT+ T+I   +GL  VG   EA   
Sbjct: 127 TLNILANCLCNLNRVSEGLAAMTGILRRGY-IPDIVTYNTLIKGLYGLCKVGHEDEAKE- 184

Query: 338 LYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLC 397
           +++ M  +G  P +++Y++++ G     ++EE+K +FN M+  GV  +   + ++ID LC
Sbjct: 185 IFEEMKAQGMIPNVISYSSLVHGFCCAGKLEESKRLFNEMVDQGVQPNLVQFNVLIDILC 244

Query: 398 ESNQ---LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTP 454
           +  +   L  A++ +  +      H+   Y  +I G C+  K+ EA++   E+   G  P
Sbjct: 245 KEGKIGDLSSARKLFLSMPSKGCEHNEISYTILINGYCKIWKVEEAMNLYNEMPQVGKRP 304

Query: 455 NIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRI-LDKLHGN 503
           N+  Y+ ++ G  +     +A ++   M+ +G++ D+  + I LD L  N
Sbjct: 305 NVKTYSTLLTGLLQTGKVGDANKLFGVMKASGISVDSCIYVIFLDGLCKN 354



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 98/389 (25%), Positives = 177/389 (45%), Gaps = 23/389 (5%)

Query: 4   LCGLSRVGEAHKLFF---DMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           L GL+++    +LF     M+  G  P++ +   L +  C    +         +   G 
Sbjct: 97  LGGLAKINHYSQLFSLYNKMRLAGLSPDLFTLNILANCLCNLNRVSEGLAAMTGILRRGY 156

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P+ +TY+ L++G+     V   +    +++E MK  + +  N  ++++LV   C  G +
Sbjct: 157 IPDIVTYNTLIKGLYGLCKVGHEDEAK-EIFEEMK-AQGMIPNVISYSSLVHGFCCAGKL 214

Query: 121 NEVFRIAEDM-PQGKSVN-EEFACGHMIDSLCRSGRN---HGASRVVYVMRKRGLTPSLV 175
            E  R+  +M  QG   N  +F    +ID LC+ G+      A ++   M  +G   + +
Sbjct: 215 EESKRLFNEMVDQGVQPNLVQFNV--LIDILCKEGKIGDLSSARKLFLSMPSKGCEHNEI 272

Query: 176 SYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM 235
           SY  +++G CK      A  L  E  Q G  P+  TY  L+ GL     +  A K+   M
Sbjct: 273 SYTILINGYCKIWKVEEAMNLYNEMPQVGKRPNVKTYSTLLTGLLQTGKVGDANKLFGVM 332

Query: 236 LSKKDVDRTRICNIYLRALC---LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKM 292
            +      + I  I+L  LC   ++    EL N L        + D  + + +I+G CK 
Sbjct: 333 KASGISVDSCIYVIFLDGLCKNGVLFEAMELFNELK---SYNFKLDFESYSRLIDGLCKA 389

Query: 293 GRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLY---QVMPQRGYSP 349
           G++E A +    + + +   P+ VT   +I G   V ++ +A N+L+   + M + G +P
Sbjct: 390 GKVEIAWEFFKQL-SQEGLQPNVVTCNIMIHGFCRVEQVDKA-NILFEKMEKMEENGCTP 447

Query: 350 GIVTYNAVLRGLFRLRRVEEAKEVFNCML 378
            I+TYN +LRG     ++EE   + + M 
Sbjct: 448 DIITYNTLLRGFCESNKLEEVVNLLHKMF 476



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 101/216 (46%), Gaps = 10/216 (4%)

Query: 290 CKMGRIE--EALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGY 347
           CK G I+  +A     D++      P   +F  ++ GL  +    +  +L Y  M   G 
Sbjct: 64  CKTGNIDVIQAFHFF-DLMMRSHPIPPISSFNRLLGGLAKINHYSQLFSL-YNKMRLAGL 121

Query: 348 SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL---CESNQLDE 404
           SP + T N +   L  L RV E       +L  G + D  TY  +I GL   C+    DE
Sbjct: 122 SPDLFTLNILANCLCNLNRVSEGLAAMTGILRRGYIPDIVTYNTLIKGLYGLCKVGHEDE 181

Query: 405 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464
           AK  ++++     I +   Y++++ G C +GK+ E+     E+VD GV PN+V +NV+ID
Sbjct: 182 AKEIFEEMKAQGMIPNVISYSSLVHGFCCAGKLEESKRLFNEMVDQGVQPNLVQFNVLID 241

Query: 465 GAC---KLSMKREAYQILREMRKNGLNPDAVTWRIL 497
             C   K+     A ++   M   G   + +++ IL
Sbjct: 242 ILCKEGKIGDLSSARKLFLSMPSKGCEHNEISYTIL 277



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 55/98 (56%), Gaps = 3/98 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHC-- 58
           +D LC   +V  A + F  +   G  PNVV+   +IHG+CR  ++D A  +F++M     
Sbjct: 383 IDGLCKAGKVEIAWEFFKQLSQEGLQPNVVTCNIMIHGFCRVEQVDKANILFEKMEKMEE 442

Query: 59  -GVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMK 95
            G  P+ +TY+ L+RG   +  +E    L+ K+++RM+
Sbjct: 443 NGCTPDIITYNTLLRGFCESNKLEEVVNLLHKMFKRMR 480


>gi|218185204|gb|EEC67631.1| hypothetical protein OsI_35025 [Oryza sativa Indica Group]
          Length = 800

 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 132/467 (28%), Positives = 207/467 (44%), Gaps = 43/467 (9%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMR-HCGVLPNSLTYSVLVRGVLRTR 78
           M   G  P       L+  Y   G +  A  + + +R   G LP     + L++ ++  R
Sbjct: 334 MSLAGAAPTRACLGALVAAYADAGMLGKATDMCERLREQYGSLPEVTHCNRLLKLLVEQR 393

Query: 79  DVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNE 138
             + A     KL++ M  E D   +N +   LV  LC EG V E  ++ E          
Sbjct: 394 RWDDAR----KLYDEMLGE-DSGADNYSTCVLVRGLCLEGRVEEGLKLIE---------- 438

Query: 139 EFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLE 198
                       R G               G  P +V YN ++ G C+ G   R   LL 
Sbjct: 439 -----------ARWGA--------------GCIPHVVFYNVLIDGYCRRGDMGRGLLLLG 473

Query: 199 EGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIK 258
           E    G+LP+  TY  L+  L  + DLEK   +   M  +      +I N  + ALC   
Sbjct: 474 EMEAKGFLPTLVTYGSLINCLGKKGDLEKIGSLFLEMRKRGLSPNVQIYNSVIDALCKCW 533

Query: 259 NPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTF 318
           + T+ + +L  M  + C PD+IT NT+I G C  G + +A   L + +  +   P+ +++
Sbjct: 534 SATQAMVILKQMFASGCDPDIITFNTLITGLCHEGHVRKAEHFLREAIRREL-NPNQLSY 592

Query: 319 TTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCML 378
           T +I G    G +  A +LL ++M  RG++P +VT+ A++ GL    +V EA  V   M 
Sbjct: 593 TPLIHGFCMRGELMAASDLLMEMM-GRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMT 651

Query: 379 GIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIH 438
              V  D   Y ++I GLC+ + L  AK   ++++  +   D +VYA +I G  RS  + 
Sbjct: 652 ERQVFPDVNIYNVLISGLCKKHMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSENLG 711

Query: 439 EAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN 485
           +A      +   GV P+IV  N +I G C+  M  EA   +  MRK 
Sbjct: 712 DARKIFEFMEHKGVRPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKQ 758



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 94/332 (28%), Positives = 148/332 (44%), Gaps = 6/332 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   RV E  KL       G +P+VV Y  LI GYCR G+M     +  EM   G LP 
Sbjct: 424 LCLEGRVEEGLKLIEARWGAGCIPHVVFYNVLIDGYCRRGDMGRGLLLLGEMEAKGFLPT 483

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY  L+  + +  D+E+   L  ++ +R      LS N   + +++D+LC+     + 
Sbjct: 484 LVTYGSLINCLGKKGDLEKIGSLFLEMRKR-----GLSPNVQIYNSVIDALCKCWSATQA 538

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             I + M       +      +I  LC  G    A   +    +R L P+ +SY  ++HG
Sbjct: 539 MVILKQMFASGCDPDIITFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSYTPLIHG 598

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            C  G  M A  LL E +  G+ P   T+  L+ GL     + +A  V + M  ++    
Sbjct: 599 FCMRGELMAASDLLMEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPD 658

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
             I N+ +  LC         N+L  ML+   QPD     T+I+GF +   + +A K+  
Sbjct: 659 VNIYNVLISGLCKKHMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSENLGDARKIF- 717

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEAL 335
           + +  K   PD V+   +I G    G + EA+
Sbjct: 718 EFMEHKGVRPDIVSCNAMIKGYCQFGMMSEAI 749



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 89/363 (24%), Positives = 169/363 (46%), Gaps = 9/363 (2%)

Query: 9   RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYS 68
           R  +A KL+ +M       +  S   L+ G C  G ++   K+ +     G +P+ + Y+
Sbjct: 394 RWDDARKLYDEMLGEDSGADNYSTCVLVRGLCLEGRVEEGLKLIEARWGAGCIPHVVFYN 453

Query: 69  VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAE 128
           VL+ G  R  D+ R  +L+ ++     E +        + +L++ L ++G + ++  +  
Sbjct: 454 VLIDGYCRRGDMGRGLLLLGEM-----EAKGFLPTLVTYGSLINCLGKKGDLEKIGSLFL 508

Query: 129 DM-PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKH 187
           +M  +G S N +     +ID+LC+      A  ++  M   G  P ++++N+++ GLC  
Sbjct: 509 EMRKRGLSPNVQIY-NSVIDALCKCWSATQAMVILKQMFASGCDPDIITFNTLITGLCHE 567

Query: 188 GGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC 247
           G   +A   L E I+    P++ +Y  L+ G C   +L  A  +L  M+ +         
Sbjct: 568 GHVRKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGELMAASDLLMEMMGRGHTPDVVTF 627

Query: 248 NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA 307
              +  L +    +E L V   M + Q  PDV   N +I+G CK   +  A  +L +M+ 
Sbjct: 628 GALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCKKHMLPAAKNILEEMLE 687

Query: 308 GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRV 367
            K   PD   + T+I G +    + +A   +++ M  +G  P IV+ NA+++G  +   +
Sbjct: 688 -KNVQPDEFVYATLIDGFIRSENLGDARK-IFEFMEHKGVRPDIVSCNAMIKGYCQFGMM 745

Query: 368 EEA 370
            EA
Sbjct: 746 SEA 748



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/320 (23%), Positives = 151/320 (47%), Gaps = 12/320 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C    +G    L  +M+++G +P +V+Y +LI+   + G+++    +F EMR  G+
Sbjct: 456 IDGYCRRGDMGRGLLLLGEMEAKGFLPTLVTYGSLINCLGKKGDLEKIGSLFLEMRKRGL 515

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN   Y+ ++  + +     +A V++ +++    + + ++ N      L+  LC EG+V
Sbjct: 516 SPNVQIYNSVIDALCKCWSATQAMVILKQMFASGCDPDIITFN-----TLITGLCHEGHV 570

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            +      +  + +    + +   +I   C  G    AS ++  M  RG TP +V++ ++
Sbjct: 571 RKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGELMAASDLLMEMMGRGHTPDVVTFGAL 630

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +HGL   G    A  + E+  +    P  + Y VL+ GLC +  L  A+ +L+ ML K  
Sbjct: 631 IHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCKKHMLPAAKNILEEMLEKNV 690

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                +    +      +N  +   +  FM     +PD+++ N +I G+C+ G + EA+ 
Sbjct: 691 QPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGVRPDIVSCNAMIKGYCQFGMMSEAIL 750

Query: 301 VLNDM-------VAGKFCAP 313
            +++M        AG F  P
Sbjct: 751 CMSNMRKQLEVERAGTFIVP 770



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 95/370 (25%), Positives = 151/370 (40%), Gaps = 40/370 (10%)

Query: 165 MRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE-GIQFGYLPSEHTYKVLVEGLCGES 223
           M   G  P+     ++V      G   +A  + E    Q+G LP       L++ L  + 
Sbjct: 334 MSLAGAAPTRACLGALVAAYADAGMLGKATDMCERLREQYGSLPEVTHCNRLLKLLVEQR 393

Query: 224 DLEKARKVLQFMLSKKD-VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITL 282
             + ARK+   ML +    D    C + +R LCL     E L ++       C P V+  
Sbjct: 394 RWDDARKLYDEMLGEDSGADNYSTC-VLVRGLCLEGRVEEGLKLIEARWGAGCIPHVVFY 452

Query: 283 NTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVM 342
           N +I+G+C+ G +   L +L +M A  F  P  VT+ ++I  L   G + E +  L+  M
Sbjct: 453 NVLIDGYCRRGDMGRGLLLLGEMEAKGFL-PTLVTYGSLINCLGKKGDL-EKIGSLFLEM 510

Query: 343 PQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQL 402
            +RG SP +  YN+V+  L +     +A  +   M   G   D  T+  +I GLC    +
Sbjct: 511 RKRGLSPNVQIYNSVIDALCKCWSATQAMVILKQMFASGCDPDIITFNTLITGLCHEGHV 570

Query: 403 DEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVC---- 458
            +A+ F  + +      +   Y  +I G C  G++  A   L E++  G TP++V     
Sbjct: 571 RKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGELMAASDLLMEMMGRGHTPDVVTFGAL 630

Query: 459 -------------------------------YNVVIDGACKLSMKREAYQILREMRKNGL 487
                                          YNV+I G CK  M   A  IL EM +  +
Sbjct: 631 IHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCKKHMLPAAKNILEEMLEKNV 690

Query: 488 NPDAVTWRIL 497
            PD   +  L
Sbjct: 691 QPDEFVYATL 700



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 61/263 (23%), Positives = 110/263 (41%), Gaps = 43/263 (16%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC    V +A     +   R   PN +SYT LIHG+C  GE+  A  +  EM   G  P+
Sbjct: 564 LCHEGHVRKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGELMAASDLLMEMMGRGHTPD 623

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +T+  L+ G++    V  A ++  K+ ER +   D+++ N     L+  LC++  +   
Sbjct: 624 VVTFGALIHGLVVAGKVSEALIVREKMTER-QVFPDVNIYNV----LISGLCKKHMLPAA 678

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             I E+M +     +EF    +ID   RS     A ++   M  +G+ P +VS N+    
Sbjct: 679 KNILEEMLEKNVQPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGVRPDIVSCNA---- 734

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
                                          +++G C    + +A   +  M  + +V+R
Sbjct: 735 -------------------------------MIKGYCQFGMMSEAILCMSNMRKQLEVER 763

Query: 244 TR---ICNIYLRALCLIKNPTEL 263
                + + +   + + K+PTE+
Sbjct: 764 AGTFIVPSNWRSGINVTKSPTEI 786



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 58/111 (52%)

Query: 396 LCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN 455
           L E  + D+A++ +D+++   +  DNY    +++GLC  G++ E +  +     +G  P+
Sbjct: 389 LVEQRRWDDARKLYDEMLGEDSGADNYSTCVLVRGLCLEGRVEEGLKLIEARWGAGCIPH 448

Query: 456 IVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           +V YNV+IDG C+         +L EM   G  P  VT+  L    G +G+
Sbjct: 449 VVFYNVLIDGYCRRGDMGRGLLLLGEMEAKGFLPTLVTYGSLINCLGKKGD 499


>gi|357498921|ref|XP_003619749.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494764|gb|AES75967.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 680

 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 113/487 (23%), Positives = 226/487 (46%), Gaps = 52/487 (10%)

Query: 16  LFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVL 75
           LF  M+ RG  PN V++  LI+ +C+ G +  A+ V  ++   G  P+++T +  ++G  
Sbjct: 92  LFQKMEYRGIKPNFVNFNILINCFCQLGLIPFAFSVLAKILKMGYEPDTITLNTFIKGFC 151

Query: 76  RTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKS 135
               + +A     KL           ++  ++  L++ LC+ G       +   +  GK 
Sbjct: 152 LKGQIHQALNFHDKLVAL-----GFHLDQVSYGTLINGLCKVGETRAALELLRRV-DGKL 205

Query: 136 VNEEFAC-GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAY 194
           V  +      +IDS+C+    + A  +   M  R ++ ++V+Y++++ G C  G    A 
Sbjct: 206 VQLDVVMYSTIIDSMCKDKNVNDAFDLYSEMVSRRISSNIVTYSALISGFCIVGKLKDAI 265

Query: 195 QLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRAL 254
            L  +       P  +T+ +LV+  C E  +++A+                         
Sbjct: 266 GLFNKMTSENINPDVYTFNILVDAFCKEGRVKEAK------------------------- 300

Query: 255 CLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPD 314
                     N L  M++   +PD++T N++++G+C +  +  A  +LN M + +     
Sbjct: 301 ----------NGLAMMMKQGIKPDIVTYNSLMDGYCLVNEVNMAKSILNTM-SHRGVTAT 349

Query: 315 AVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVF 374
             ++  +I G   +  + +A+ L ++ M  +   P ++TYN+++ GL +  R+  A E+ 
Sbjct: 350 VRSYNIVINGFCKIKMVDQAMKL-FKEMHHKQIFPNVITYNSLIDGLCKSGRISYALELI 408

Query: 375 NCMLGIGVVADSTTYAIVIDGLCESNQLDEAK----RFWDDIVWPSNIHDNYVYAAMIKG 430
           + M   G   D  TY+ ++D LC+++ +D+A     +  D  + P    + Y Y  +I G
Sbjct: 409 DLMHDRGQQPDIITYSSILDALCKNHLVDKAIALLIKLKDQGIRP----NMYTYTILIDG 464

Query: 431 LCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD 490
           LC+ G++ +A +   +L+  G    +  Y V+I G C   +  EA  +L +M+ N   PD
Sbjct: 465 LCKGGRLEDARNIFEDLLVKGYNLTVNTYTVMIQGFCSHGLFDEALSLLSKMKDNSCIPD 524

Query: 491 AVTWRIL 497
           A+T+ I+
Sbjct: 525 AITYEII 531



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 101/392 (25%), Positives = 199/392 (50%), Gaps = 4/392 (1%)

Query: 107 FANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGH-MIDSLCRSGRNHGASRVVYVM 165
           F  ++ SL +  + + V  + + M + + +   F   + +I+  C+ G    A  V+  +
Sbjct: 73  FGQILGSLVKSKHYHTVLSLFQKM-EYRGIKPNFVNFNILINCFCQLGLIPFAFSVLAKI 131

Query: 166 RKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDL 225
            K G  P  ++ N+ + G C  G   +A    ++ +  G+   + +Y  L+ GLC   + 
Sbjct: 132 LKMGYEPDTITLNTFIKGFCLKGQIHQALNFHDKLVALGFHLDQVSYGTLINGLCKVGET 191

Query: 226 EKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTV 285
             A ++L+ +  K       + +  + ++C  KN  +  ++   M+  +   +++T + +
Sbjct: 192 RAALELLRRVDGKLVQLDVVMYSTIIDSMCKDKNVNDAFDLYSEMVSRRISSNIVTYSAL 251

Query: 286 INGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQR 345
           I+GFC +G++++A+ + N M +     PD  TF  ++      GR++EA N L  +M Q 
Sbjct: 252 ISGFCIVGKLKDAIGLFNKMTSENI-NPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQ- 309

Query: 346 GYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA 405
           G  P IVTYN+++ G   +  V  AK + N M   GV A   +Y IVI+G C+   +D+A
Sbjct: 310 GIKPDIVTYNSLMDGYCLVNEVNMAKSILNTMSHRGVTATVRSYNIVINGFCKIKMVDQA 369

Query: 406 KRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDG 465
            + + ++       +   Y ++I GLC+SG+I  A+  +  + D G  P+I+ Y+ ++D 
Sbjct: 370 MKLFKEMHHKQIFPNVITYNSLIDGLCKSGRISYALELIDLMHDRGQQPDIITYSSILDA 429

Query: 466 ACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            CK  +  +A  +L +++  G+ P+  T+ IL
Sbjct: 430 LCKNHLVDKAIALLIKLKDQGIRPNMYTYTIL 461



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 112/456 (24%), Positives = 211/456 (46%), Gaps = 7/456 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C L  +  A  +   +   G+ P+ ++  T I G+C  G++  A    D++   G   +
Sbjct: 115 FCQLGLIPFAFSVLAKILKMGYEPDTITLNTFIKGFCLKGQIHQALNFHDKLVALGFHLD 174

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            ++Y  L+ G+ +  +   A  L+     R  + + + ++   ++ ++DS+C++  VN+ 
Sbjct: 175 QVSYGTLINGLCKVGETRAALELL-----RRVDGKLVQLDVVMYSTIIDSMCKDKNVNDA 229

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           F +  +M   +  +       +I   C  G+   A  +   M    + P + ++N +V  
Sbjct: 230 FDLYSEMVSRRISSNIVTYSALISGFCIVGKLKDAIGLFNKMTSENINPDVYTFNILVDA 289

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK G    A   L   ++ G  P   TY  L++G C  +++  A+ +L  M  +     
Sbjct: 290 FCKEGRVKEAKNGLAMMMKQGIKPDIVTYNSLMDGYCLVNEVNMAKSILNTMSHRGVTAT 349

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
            R  NI +   C IK   + + +   M   Q  P+VIT N++I+G CK GRI  AL+++ 
Sbjct: 350 VRSYNIVINGFCKIKMVDQAMKLFKEMHHKQIFPNVITYNSLIDGLCKSGRISYALELI- 408

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           D++  +   PD +T+++I+  L     + +A+ LL ++  Q G  P + TY  ++ GL +
Sbjct: 409 DLMHDRGQQPDIITYSSILDALCKNHLVDKAIALLIKLKDQ-GIRPNMYTYTILIDGLCK 467

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
             R+E+A+ +F  +L  G      TY ++I G C     DEA      +   S I D   
Sbjct: 468 GGRLEDARNIFEDLLVKGYNLTVNTYTVMIQGFCSHGLFDEALSLLSKMKDNSCIPDAIT 527

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCY 459
           Y  +I  L    +  +A   L E++  G+  + + Y
Sbjct: 528 YEIIICSLFDKDENDKAEKLLREMITRGLLYSFLEY 563



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 109/492 (22%), Positives = 210/492 (42%), Gaps = 61/492 (12%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D +C    V +A  L+ +M SR    N+V+Y+ LI G+C  G++  A  +F++M    +
Sbjct: 217 IDSMCKDKNVNDAFDLYSEMVSRRISSNIVTYSALISGFCIVGKLKDAIGLFNKMTSENI 276

Query: 61  LPNSLTYSVLVRGVLRTRDVERA-NVLMFKLWERMKEE---------------------- 97
            P+  T+++LV    +   V+ A N L   + + +K +                      
Sbjct: 277 NPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPDIVTYNSLMDGYCLVNEVNMAKS 336

Query: 98  -------EDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC 150
                    ++    ++  +++  C+   V++  ++ ++M   +          +ID LC
Sbjct: 337 ILNTMSHRGVTATVRSYNIVINGFCKIKMVDQAMKLFKEMHHKQIFPNVITYNSLIDGLC 396

Query: 151 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210
           +SGR   A  ++ +M  RG  P +++Y+SI+  LCK+    +A  LL +    G  P+ +
Sbjct: 397 KSGRISYALELIDLMHDRGQQPDIITYSSILDALCKNHLVDKAIALLIKLKDQGIRPNMY 456

Query: 211 TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM 270
           TY +L++GLC    LE AR + + +L K          + ++  C      E L++L  M
Sbjct: 457 TYTILIDGLCKGGRLEDARNIFEDLLVKGYNLTVNTYTVMIQGFCSHGLFDEALSLLSKM 516

Query: 271 LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR 330
               C PD IT   +I         ++A K+L +M+         + ++ + +G  ++  
Sbjct: 517 KDNSCIPDAITYEIIICSLFDKDENDKAEKLLREMIT------RGLLYSFLEYGSWSLSF 570

Query: 331 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTY- 389
           +    + L     Q   S     +  +L     L R+       +C+L    + D     
Sbjct: 571 MAAPAHFLNNDSLQCTSSQESGNWAKLL-----LERI-----YCDCVLTKSNMRDKDVEC 620

Query: 390 -AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELV 448
            +++I   C     D +K+ +        I D   Y  MI+G C  G   E++  L ++ 
Sbjct: 621 PSVIIYSTC-----DWSKQGY--------ILDVNTYTVMIQGFCSHGLFDESLALLSKME 667

Query: 449 DSGVTPNIVCYN 460
            +G  P+ V Y+
Sbjct: 668 VNGCIPDAVTYD 679


>gi|225450007|ref|XP_002272339.1| PREDICTED: pentatricopeptide repeat-containing protein At2g19280
           [Vitis vinifera]
          Length = 644

 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 116/433 (26%), Positives = 207/433 (47%), Gaps = 13/433 (3%)

Query: 19  DMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTR 78
           +MKS+G   N    +  I GYC  G +D  +K+  EM++ G+ P+ + Y++++  + +  
Sbjct: 211 EMKSQGLGLNASIISLFISGYCSQGNIDTGWKLLMEMKYLGIKPDVVAYTIVIDSLCKMS 270

Query: 79  DVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNE 138
            ++ A  ++FK+      +  + +++ + +++VD  C+ G   E   + E      ++  
Sbjct: 271 LLKEATSILFKM-----TQMGVFLDSVSVSSVVDGYCKVGKSEEAMDVLEVFNLSPNI-- 323

Query: 139 EFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLE 198
            F     I  LC  G    A++V   M + GL P   SY +++ G CK      A + L 
Sbjct: 324 -FVFNSFISKLCTDGNMLKAAKVFQDMCEMGLIPDCFSYTTMMAGYCKVKDISNALKYLG 382

Query: 199 EGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIK 258
           + ++ G  PS  TY +L++  C   ++E A  + Q M+++  V      N  +       
Sbjct: 383 KMLKRGIRPSVATYTLLIDSCCKPGNMEMAEYLFQRMITEGLVPDVVSYNTLMNGYGKKG 442

Query: 259 NPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTF 318
           +  +   +L  M      PD++T N +I+G  K G + EA  +L+++    F +PD VTF
Sbjct: 443 HLQKAFELLSMMRSAGVSPDLVTYNILIHGLIKRGLVNEAKDILDELTRRGF-SPDVVTF 501

Query: 319 TTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCML 378
           T II G  N G  +EA  LL+  M +    P +VT +A+L G  R R + EA  +F+ ML
Sbjct: 502 TNIIGGFSNKGNFEEAF-LLFFYMSEHHLEPDVVTCSALLNGYCRTRCMAEANVLFHKML 560

Query: 379 GIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL---CRSG 435
             G+ AD   Y  +I G C    +D+A      ++    + +N  + A++ G    C   
Sbjct: 561 DAGLKADVILYNSLIHGFCSLGNIDDACHLVSMMIEHGIMPNNITHHALVLGYEKKCVEN 620

Query: 436 KIHEAVHFLYELV 448
            +  A   L +L+
Sbjct: 621 PVERAAFKLQQLL 633



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 121/471 (25%), Positives = 220/471 (46%), Gaps = 20/471 (4%)

Query: 32  YTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLW 91
           Y  L++ Y +     VA K+  +MRH  + P     + L++ +L +  +  A       W
Sbjct: 154 YGMLVNCYVKENMTQVALKLICKMRHLNIFPLIGVCNSLLKALLESEQLNLA-------W 206

Query: 92  ERMKE--EEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSL 149
           + +KE   + L +N +  +  +   C +G ++  +++  +M       +  A   +IDSL
Sbjct: 207 DFLKEMKSQGLGLNASIISLFISGYCSQGNIDTGWKLLMEMKYLGIKPDVVAYTIVIDSL 266

Query: 150 CRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSE 209
           C+      A+ +++ M + G+    VS +S+V G CK G    A  +LE    F   P+ 
Sbjct: 267 CKMSLLKEATSILFKMTQMGVFLDSVSVSSVVDGYCKVGKSEEAMDVLE---VFNLSPNI 323

Query: 210 HTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVF 269
             +   +  LC + ++ KA KV Q M     +         +   C +K+ +  L  L  
Sbjct: 324 FVFNSFISKLCTDGNMLKAAKVFQDMCEMGLIPDCFSYTTMMAGYCKVKDISNALKYLGK 383

Query: 270 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG 329
           ML+   +P V T   +I+  CK G +E A  +   M+      PD V++ T++ G    G
Sbjct: 384 MLKRGIRPSVATYTLLIDSCCKPGNMEMAEYLFQRMITEGL-VPDVVSYNTLMNGYGKKG 442

Query: 330 RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTY 389
            +Q+A  LL  +M   G SP +VTYN ++ GL +   V EAK++ + +   G   D  T+
Sbjct: 443 HLQKAFELL-SMMRSAGVSPDLVTYNILIHGLIKRGLVNEAKDILDELTRRGFSPDVVTF 501

Query: 390 AIVIDGLCESNQLDEAKRFWDDIVWPSNIH---DNYVYAAMIKGLCRSGKIHEAVHFLYE 446
             +I G       +EA   +    + S  H   D    +A++ G CR+  + EA    ++
Sbjct: 502 TNIIGGFSNKGNFEEAFLLF---FYMSEHHLEPDVVTCSALLNGYCRTRCMAEANVLFHK 558

Query: 447 LVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           ++D+G+  +++ YN +I G C L    +A  ++  M ++G+ P+ +T   L
Sbjct: 559 MLDAGLKADVILYNSLIHGFCSLGNIDDACHLVSMMIEHGIMPNNITHHAL 609



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/394 (23%), Positives = 185/394 (46%), Gaps = 13/394 (3%)

Query: 116 REGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLV 175
            EG+ N   +I E   + + +  E   G +++   +      A +++  MR   + P + 
Sbjct: 130 EEGWHNIFLKIHETHTKRRVL--ETVYGMLVNCYVKENMTQVALKLICKMRHLNIFPLIG 187

Query: 176 SYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVL--- 232
             NS++  L +      A+  L+E    G   +     + + G C + +++   K+L   
Sbjct: 188 VCNSLLKALLESEQLNLAWDFLKEMKSQGLGLNASIISLFISGYCSQGNIDTGWKLLMEM 247

Query: 233 QFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKM 292
           +++  K DV    I    + +LC +    E  ++L  M Q     D +++++V++G+CK+
Sbjct: 248 KYLGIKPDVVAYTIV---IDSLCKMSLLKEATSILFKMTQMGVFLDSVSVSSVVDGYCKV 304

Query: 293 GRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIV 352
           G+ EEA+ VL         +P+   F + I  L   G + +A  + +Q M + G  P   
Sbjct: 305 GKSEEAMDVLEVFNL----SPNIFVFNSFISKLCTDGNMLKAAKV-FQDMCEMGLIPDCF 359

Query: 353 TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI 412
           +Y  ++ G  +++ +  A +    ML  G+     TY ++ID  C+   ++ A+  +  +
Sbjct: 360 SYTTMMAGYCKVKDISNALKYLGKMLKRGIRPSVATYTLLIDSCCKPGNMEMAEYLFQRM 419

Query: 413 VWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMK 472
           +    + D   Y  ++ G  + G + +A   L  +  +GV+P++V YN++I G  K  + 
Sbjct: 420 ITEGLVPDVVSYNTLMNGYGKKGHLQKAFELLSMMRSAGVSPDLVTYNILIHGLIKRGLV 479

Query: 473 REAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
            EA  IL E+ + G +PD VT+  +     N+GN
Sbjct: 480 NEAKDILDELTRRGFSPDVVTFTNIIGGFSNKGN 513



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/321 (25%), Positives = 159/321 (49%), Gaps = 10/321 (3%)

Query: 6   GLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSL 65
           G  +VG++ +    ++     PN+  + + I   C  G M  A KVF +M   G++P+  
Sbjct: 300 GYCKVGKSEEAMDVLEVFNLSPNIFVFNSFISKLCTDGNMLKAAKVFQDMCEMGLIPDCF 359

Query: 66  TYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFR 125
           +Y+ ++ G  + +D+  A   + K+ +R      +  + A +  L+DS C+ G +     
Sbjct: 360 SYTTMMAGYCKVKDISNALKYLGKMLKR-----GIRPSVATYTLLIDSCCKPGNMEMAEY 414

Query: 126 IAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLC 185
           + + M     V +  +   +++   + G    A  ++ +MR  G++P LV+YN ++HGL 
Sbjct: 415 LFQRMITEGLVPDVVSYNTLMNGYGKKGHLQKAFELLSMMRSAGVSPDLVTYNILIHGLI 474

Query: 186 KHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTR 245
           K G    A  +L+E  + G+ P   T+  ++ G   + + E+A  +L F +S+  ++   
Sbjct: 475 KRGLVNEAKDILDELTRRGFSPDVVTFTNIIGGFSNKGNFEEAF-LLFFYMSEHHLEPDV 533

Query: 246 I-CNIYLRALCLIKNPTELLNVLVF-MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
           + C+  L   C  +   E  NVL   ML    + DVI  N++I+GFC +G I++A  +++
Sbjct: 534 VTCSALLNGYCRTRCMAE-ANVLFHKMLDAGLKADVILYNSLIHGFCSLGNIDDACHLVS 592

Query: 304 DMVAGKFCAPDAVTFTTIIFG 324
            M+      P+ +T   ++ G
Sbjct: 593 MMIEHGI-MPNNITHHALVLG 612



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 119/241 (49%), Gaps = 8/241 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C    +  A  LF  M + G VP+VVSY TL++GY + G +  A+++   MR  GV
Sbjct: 400 IDSCCKPGNMEMAEYLFQRMITEGLVPDVVSYNTLMNGYGKKGHLQKAFELLSMMRSAGV 459

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TY++L+ G+++   V  A  ++ +L  R       S +   F N++     +G  
Sbjct: 460 SPDLVTYNILIHGLIKRGLVNEAKDILDELTRR-----GFSPDVVTFTNIIGGFSNKGNF 514

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E F +   M +     +   C  +++  CR+     A+ + + M   GL   ++ YNS+
Sbjct: 515 EEAFLLFFYMSEHHLEPDVVTCSALLNGYCRTRCMAEANVLFHKMLDAGLKADVILYNSL 574

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGL---CGESDLEKARKVLQFMLS 237
           +HG C  G    A  L+   I+ G +P+  T+  LV G    C E+ +E+A   LQ +L 
Sbjct: 575 IHGFCSLGNIDDACHLVSMMIEHGIMPNNITHHALVLGYEKKCVENPVERAAFKLQQLLL 634

Query: 238 K 238
           K
Sbjct: 635 K 635


>gi|449530582|ref|XP_004172273.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Cucumis sativus]
          Length = 505

 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 122/468 (26%), Positives = 214/468 (45%), Gaps = 45/468 (9%)

Query: 23  RGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP-NSLTYSVLVRGVLRTRDVE 81
           +GH P+  S+   +    ++G +D  +  F E  + G    +  ++ + ++      +V 
Sbjct: 67  KGHSPSSFSFNNALDLLAKSGNLDRTWGFFTE--YLGRTQFDVYSFWITIKAFCENGNVS 124

Query: 82  RANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFA 141
           +     F+L  +M E   +S N   +  L+++ CR G +++   +   M        ++ 
Sbjct: 125 KG----FELLAQM-ETMGVSPNVFIYTILIEACCRNGDIDQAKVMFSRMDDLGLAANQYI 179

Query: 142 CGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGI 201
              MI+   + G       +   M+  G+ P+L +YNS++   C+ G    A+++ +E  
Sbjct: 180 YTIMINGFFKKGYKKDGFELYQKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEIS 239

Query: 202 QFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPT 261
           + G   +  TY +L+ GLC +  + KA  +L+ M       R  I            NPT
Sbjct: 240 KRGVACNAVTYNILIGGLCRKGQVSKAEGLLERM------KRAHI------------NPT 281

Query: 262 ELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTI 321
                              T N +++G C  G++++AL  L  +     C P  VT+  +
Sbjct: 282 -----------------TRTFNMLMDGLCNTGQLDKALSYLEKLKLIGLC-PTLVTYNIL 323

Query: 322 IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG 381
           I G   VG     ++ L + M  RG SP  VTY  ++    R   +E+A E+F+ M  IG
Sbjct: 324 ISGFSKVGN-SSVVSELVREMEDRGISPSKVTYTILMNTFVRSDDIEKAYEMFHLMKRIG 382

Query: 382 VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAV 441
           +V D  TY ++I GLC    + EA + +  +V      ++ +Y  MI G C+    ++A+
Sbjct: 383 LVPDQHTYGVLIHGLCIKGNMVEASKLYKSMVEMHLQPNDVIYNTMINGYCKECNSYKAL 442

Query: 442 HFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNP 489
            FL E+V +GVTPN+  Y   I   CK     EA ++L+EM + GL P
Sbjct: 443 KFLEEMVKNGVTPNVASYISTIQILCKDGKSIEAKRLLKEMTEAGLKP 490



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 85/305 (27%), Positives = 151/305 (49%), Gaps = 5/305 (1%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           +  +L+  MK  G +PN+ +Y +LI  YCR G++ +A+KVFDE+   GV  N++TY++L+
Sbjct: 195 DGFELYQKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEISKRGVACNAVTYNILI 254

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP 131
            G+ R   V +A  L+    ERMK    ++     F  L+D LC  G +++     E + 
Sbjct: 255 GGLCRKGQVSKAEGLL----ERMKRAH-INPTTRTFNMLMDGLCNTGQLDKALSYLEKLK 309

Query: 132 QGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCM 191
                        +I    + G +   S +V  M  RG++PS V+Y  +++   +     
Sbjct: 310 LIGLCPTLVTYNILISGFSKVGNSSVVSELVREMEDRGISPSKVTYTILMNTFVRSDDIE 369

Query: 192 RAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYL 251
           +AY++     + G +P +HTY VL+ GLC + ++ +A K+ + M+         I N  +
Sbjct: 370 KAYEMFHLMKRIGLVPDQHTYGVLIHGLCIKGNMVEASKLYKSMVEMHLQPNDVIYNTMI 429

Query: 252 RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC 311
              C   N  + L  L  M++    P+V +  + I   CK G+  EA ++L +M      
Sbjct: 430 NGYCKECNSYKALKFLEEMVKNGVTPNVASYISTIQILCKDGKSIEAKRLLKEMTEAGLK 489

Query: 312 APDAV 316
            P+++
Sbjct: 490 PPESL 494



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 93/349 (26%), Positives = 163/349 (46%), Gaps = 7/349 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C    + +A  +F  M   G   N   YT +I+G+ + G     ++++ +M+  GV
Sbjct: 149 IEACCRNGDIDQAKVMFSRMDDLGLAANQYIYTIMINGFFKKGYKKDGFELYQKMKLVGV 208

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           LPN  TY+ L+    R   +     L FK+++ +  +  ++ N   +  L+  LCR+G V
Sbjct: 209 LPNLYTYNSLITEYCRDGKLS----LAFKVFDEI-SKRGVACNAVTYNILIGGLCRKGQV 263

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           ++   + E M +            ++D LC +G+   A   +  ++  GL P+LV+YN +
Sbjct: 264 SKAEGLLERMKRAHINPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIGLCPTLVTYNIL 323

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G  K G      +L+ E    G  PS+ TY +L+       D+EKA ++   M     
Sbjct: 324 ISGFSKVGNSSVVSELVREMEDRGISPSKVTYTILMNTFVRSDDIEKAYEMFHLMKRIGL 383

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           V       + +  LC+  N  E   +   M++   QP+ +  NT+ING+CK     +ALK
Sbjct: 384 VPDQHTYGVLIHGLCIKGNMVEASKLYKSMVEMHLQPNDVIYNTMINGYCKECNSYKALK 443

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSP 349
            L +MV      P+  ++ + I  L   G+  EA  LL + M + G  P
Sbjct: 444 FLEEMVKNG-VTPNVASYISTIQILCKDGKSIEAKRLLKE-MTEAGLKP 490



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/310 (25%), Positives = 145/310 (46%), Gaps = 10/310 (3%)

Query: 195 QLLEEGIQ-------FGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC 247
           QLLE+ +         G+ PS  ++   ++ L    +L++        L +   D     
Sbjct: 52  QLLEQSLDGFKLMVLKGHSPSSFSFNNALDLLAKSGNLDRTWGFFTEYLGRTQFDVYSFW 111

Query: 248 NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA 307
            I ++A C   N ++   +L  M      P+V     +I   C+ G I++A KV+   + 
Sbjct: 112 -ITIKAFCENGNVSKGFELLAQMETMGVSPNVFIYTILIEACCRNGDIDQA-KVMFSRMD 169

Query: 308 GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRV 367
               A +   +T +I G    G  ++   L YQ M   G  P + TYN+++    R  ++
Sbjct: 170 DLGLAANQYIYTIMINGFFKKGYKKDGFEL-YQKMKLVGVLPNLYTYNSLITEYCRDGKL 228

Query: 368 EEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAM 427
             A +VF+ +   GV  ++ TY I+I GLC   Q+ +A+   + +           +  +
Sbjct: 229 SLAFKVFDEISKRGVACNAVTYNILIGGLCRKGQVSKAEGLLERMKRAHINPTTRTFNML 288

Query: 428 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
           + GLC +G++ +A+ +L +L   G+ P +V YN++I G  K+       +++REM   G+
Sbjct: 289 MDGLCNTGQLDKALSYLEKLKLIGLCPTLVTYNILISGFSKVGNSSVVSELVREMEDRGI 348

Query: 488 NPDAVTWRIL 497
           +P  VT+ IL
Sbjct: 349 SPSKVTYTIL 358



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 106/209 (50%), Gaps = 5/209 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           MD LC   ++ +A      +K  G  P +V+Y  LI G+ + G   V  ++  EM   G+
Sbjct: 289 MDGLCNTGQLDKALSYLEKLKLIGLCPTLVTYNILISGFSKVGNSSVVSELVREMEDRGI 348

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ +TY++L+   +R+ D+E+A   MF L +R+     L  +   +  L+  LC +G +
Sbjct: 349 SPSKVTYTILMNTFVRSDDIEKA-YEMFHLMKRI----GLVPDQHTYGVLIHGLCIKGNM 403

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E  ++ + M +      +     MI+  C+   ++ A + +  M K G+TP++ SY S 
Sbjct: 404 VEASKLYKSMVEMHLQPNDVIYNTMINGYCKECNSYKALKFLEEMVKNGVTPNVASYIST 463

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSE 209
           +  LCK G  + A +LL+E  + G  P E
Sbjct: 464 IQILCKDGKSIEAKRLLKEMTEAGLKPPE 492



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/328 (22%), Positives = 146/328 (44%), Gaps = 41/328 (12%)

Query: 176 SYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM 235
           S+   +   C++G   + ++LL +    G  P+   Y +L+E  C   D+++A+     M
Sbjct: 109 SFWITIKAFCENGNVSKGFELLAQMETMGVSPNVFIYTILIEACCRNGDIDQAK----VM 164

Query: 236 LSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 295
            S+ D D     N Y+  +                              +INGF K G  
Sbjct: 165 FSRMD-DLGLAANQYIYTI------------------------------MINGFFKKGYK 193

Query: 296 EEALKVLNDM-VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTY 354
           ++  ++   M + G    P+  T+ ++I      G++  A  +  ++  +RG +   VTY
Sbjct: 194 KDGFELYQKMKLVG--VLPNLYTYNSLITEYCRDGKLSLAFKVFDEI-SKRGVACNAVTY 250

Query: 355 NAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVW 414
           N ++ GL R  +V +A+ +   M    +   + T+ +++DGLC + QLD+A  + + +  
Sbjct: 251 NILIGGLCRKGQVSKAEGLLERMKRAHINPTTRTFNMLMDGLCNTGQLDKALSYLEKLKL 310

Query: 415 PSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKRE 474
                    Y  +I G  + G        + E+ D G++P+ V Y ++++   +     +
Sbjct: 311 IGLCPTLVTYNILISGFSKVGNSSVVSELVREMEDRGISPSKVTYTILMNTFVRSDDIEK 370

Query: 475 AYQILREMRKNGLNPDAVTWRILDKLHG 502
           AY++   M++ GL PD  T+ +L  +HG
Sbjct: 371 AYEMFHLMKRIGLVPDQHTYGVL--IHG 396



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 105/234 (44%), Gaps = 2/234 (0%)

Query: 274 QCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQE 333
           + Q DV +    I  FC+ G + +  ++L  M      +P+   +T +I      G I +
Sbjct: 102 RTQFDVYSFWITIKAFCENGNVSKGFELLAQMETMG-VSPNVFIYTILIEACCRNGDIDQ 160

Query: 334 ALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVI 393
           A  +++  M   G +     Y  ++ G F+    ++  E++  M  +GV+ +  TY  +I
Sbjct: 161 A-KVMFSRMDDLGLAANQYIYTIMINGFFKKGYKKDGFELYQKMKLVGVLPNLYTYNSLI 219

Query: 394 DGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVT 453
              C   +L  A + +D+I       +   Y  +I GLCR G++ +A   L  +  + + 
Sbjct: 220 TEYCRDGKLSLAFKVFDEISKRGVACNAVTYNILIGGLCRKGQVSKAEGLLERMKRAHIN 279

Query: 454 PNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGND 507
           P    +N+++DG C      +A   L +++  GL P  VT+ IL       GN 
Sbjct: 280 PTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIGLCPTLVTYNILISGFSKVGNS 333


>gi|357115831|ref|XP_003559689.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g55840-like [Brachypodium distachyon]
          Length = 968

 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 118/497 (23%), Positives = 240/497 (48%), Gaps = 12/497 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ +C    +  A  +   MKS   +PNV++Y T++H Y + G    A  V ++M   GV
Sbjct: 232 LNSMCIEGNLKGAKHMIHKMKSCS-LPNVITYNTILHWYVKKGRFKAAMCVLEDMEKNGV 290

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             +  TY++++  + + +    A +L+    +RM+ + +L+ +   +  L+     E  +
Sbjct: 291 EADVYTYNIMIDKLCKMKRSTHAYLLL----KRMRGD-NLAPDECTYNTLIKGFFDESKM 345

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                I  +M +            +ID  CR+G    A RV+Y M+  G+ PS V+Y+++
Sbjct: 346 MLAIHIFNEMLRQGLKPSLATYTTLIDGYCRNGTIDEALRVLYEMQVAGVKPSEVTYSAM 405

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           ++G         A+ + +   ++G  P  +TY+ L+ GLC    L +A++ +  ++    
Sbjct: 406 LNG-----SVHEAFSVYDNMEKYGCSPDVYTYRNLLRGLCKGGHLVQAKEFMSCIVHIPS 460

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
               +  N  L  +C   +  E L++   M+     PD+ T   +++GFC+ G+I  A+ 
Sbjct: 461 AIDQKTLNALLLGICNHGSLDEALDLCEKMVTINFIPDIHTYTILLSGFCRKGKIVPAV- 519

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +L  M+  K   PD VT+T ++ GL+  G+++ A  L  +++ + G     + YN+++ G
Sbjct: 520 ILLQMMLEKGLVPDIVTYTCLLKGLIKEGQVKAASYLFQEIICKEGMYADCIAYNSMMNG 579

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
             +  ++ + +     M    V  +  +Y I++ G  +   L  +   + D+V       
Sbjct: 580 YLKAGKLHKVEMTIYDMNQNKVYPNPASYNILMHGHIKKGHLSRSIYLYKDMVRKGIKPT 639

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
           N  Y  +I GL + G I  AV FL ++V  G+ P+ + ++V+I+   + S   +A Q+  
Sbjct: 640 NVTYRLLILGLSKHGMIEIAVKFLDKMVLEGIYPDRLSFDVLINAFSEKSRMSDALQLFN 699

Query: 481 EMRKNGLNPDAVTWRIL 497
            M+   ++P + T+  +
Sbjct: 700 CMKWLYMSPSSKTYSAM 716



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 116/496 (23%), Positives = 230/496 (46%), Gaps = 17/496 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D+LC + R   A+ L   M+     P+  +Y TLI G+    +M +A  +F+EM   G+
Sbjct: 301 IDKLCKMKRSTHAYLLLKRMRGDNLAPDECTYNTLIKGFFDESKMMLAIHIFNEMLRQGL 360

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+  TY+ L+ G  R   ++ A  +++          ++ V     + +  S    G V
Sbjct: 361 KPSLATYTTLIDGYCRNGTIDEALRVLY----------EMQVAGVKPSEVTYSAMLNGSV 410

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E F + ++M +     + +   +++  LC+ G    A   +  +          + N++
Sbjct: 411 HEAFSVYDNMEKYGCSPDVYTYRNLLRGLCKGGHLVQAKEFMSCIVHIPSAIDQKTLNAL 470

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G+C HG    A  L E+ +   ++P  HTY +L+ G C +  +  A  +LQ ML K  
Sbjct: 471 LLGICNHGSLDEALDLCEKMVTINFIPDIHTYTILLSGFCRKGKIVPAVILLQMMLEKGL 530

Query: 241 VDRTRICNIYLRALC---LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297
           V         L+ L     +K  + L   ++   +     D I  N+++NG+ K G++ +
Sbjct: 531 VPDIVTYTCLLKGLIKEGQVKAASYLFQEII--CKEGMYADCIAYNSMMNGYLKAGKLHK 588

Query: 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357
               + DM   K   P+  ++  ++ G +  G +  ++  LY+ M ++G  P  VTY  +
Sbjct: 589 VEMTIYDMNQNKV-YPNPASYNILMHGHIKKGHLSRSI-YLYKDMVRKGIKPTNVTYRLL 646

Query: 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 417
           + GL +   +E A +  + M+  G+  D  ++ ++I+   E +++ +A + ++ + W   
Sbjct: 647 ILGLSKHGMIEIAVKFLDKMVLEGIYPDRLSFDVLINAFSEKSRMSDALQLFNCMKWLYM 706

Query: 418 IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQ 477
              +  Y+AMI GL R   +  +   L ++V+SG+ P    Y  +I+  C+      A++
Sbjct: 707 SPSSKTYSAMINGLIRKNWLQHSCDVLRDMVESGLEPKHTHYIALINAKCRFGDINGAFR 766

Query: 478 ILREMRKNGLNPDAVT 493
           +  EM   G+ P  V 
Sbjct: 767 LKEEMTALGIVPAEVA 782



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 139/562 (24%), Positives = 247/562 (43%), Gaps = 85/562 (15%)

Query: 8   SRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTY 67
           S++  A  +F +M  +G  P++ +YTTLI GYCR G +D A +V  EM+  GV P+ +TY
Sbjct: 343 SKMMLAIHIFNEMLRQGLKPSLATYTTLIDGYCRNGTIDEALRVLYEMQVAGVKPSEVTY 402

Query: 68  SVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIA 127
           S ++ G      V  A    F +++ M E+   S +   + NL+  LC+ G++ +     
Sbjct: 403 SAMLNG-----SVHEA----FSVYDNM-EKYGCSPDVYTYRNLLRGLCKGGHLVQAKEFM 452

Query: 128 EDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKH 187
             +    S  ++     ++  +C  G    A  +   M      P + +Y  ++ G C+ 
Sbjct: 453 SCIVHIPSAIDQKTLNALLLGICNHGSLDEALDLCEKMVTINFIPDIHTYTILLSGFCRK 512

Query: 188 GGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD-----VD 242
           G  + A  LL+  ++ G +P   TY  L++GL  E  ++ A  + Q ++ K+      + 
Sbjct: 513 GKIVPAVILLQMMLEKGLVPDIVTYTCLLKGLIKEGQVKAASYLFQEIICKEGMYADCIA 572

Query: 243 RTRICNIYLRALCLIK---------------NPTELLNVLVF-----------------M 270
              + N YL+A  L K               NP    N+L+                  M
Sbjct: 573 YNSMMNGYLKAGKLHKVEMTIYDMNQNKVYPNPASY-NILMHGHIKKGHLSRSIYLYKDM 631

Query: 271 LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR 330
           ++   +P  +T   +I G  K G IE A+K L+ MV      PD ++F  +I       R
Sbjct: 632 VRKGIKPTNVTYRLLILGLSKHGMIEIAVKFLDKMVLEGI-YPDRLSFDVLINAFSEKSR 690

Query: 331 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYA 390
           + +AL L +  M     SP   TY+A++ GL R   ++ + +V   M+  G+    T Y 
Sbjct: 691 MSDALQL-FNCMKWLYMSPSSKTYSAMINGLIRKNWLQHSCDVLRDMVESGLEPKHTHYI 749

Query: 391 IVIDGLCESNQLDEAKRFWDDI----VWPSNIHDNYV----------------------- 423
            +I+  C    ++ A R  +++    + P+ + D+ +                       
Sbjct: 750 ALINAKCRFGDINGAFRLKEEMTALGIVPAEVADSSIVRGLSKCGKVEEGIIVFCSIIRA 809

Query: 424 --------YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREA 475
                   +  ++ GLC+  KI +A+H    +   G+  ++V YNV+I G CK+    +A
Sbjct: 810 GMVPTIATFTTLMHGLCKEAKISDALHLKSLMESCGLKIDVVTYNVLITGLCKIQCVSDA 869

Query: 476 YQILREMRKNGLNPDAVTWRIL 497
            ++  EM+  GL P+  T+  L
Sbjct: 870 LELYEEMKSKGLRPNVTTYTTL 891



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 105/358 (29%), Positives = 182/358 (50%), Gaps = 15/358 (4%)

Query: 141 ACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEG 200
            C  +++S+C  G   GA  +++ M+   L P++++YN+I+H   K G    A  +LE+ 
Sbjct: 227 TCNIVLNSMCIEGNLKGAKHMIHKMKSCSL-PNVITYNTILHWYVKKGRFKAAMCVLEDM 285

Query: 201 IQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNP 260
            + G     +TY ++++ LC       A  +L+ M            N  ++        
Sbjct: 286 EKNGVEADVYTYNIMIDKLCKMKRSTHAYLLLKRMRGDNLAPDECTYNTLIKGF--FDES 343

Query: 261 TELLNVLVF--MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM-VAGKFCAPDAVT 317
             +L + +F  ML+   +P + T  T+I+G+C+ G I+EAL+VL +M VAG    P  VT
Sbjct: 344 KMMLAIHIFNEMLRQGLKPSLATYTTLIDGYCRNGTIDEALRVLYEMQVAG--VKPSEVT 401

Query: 318 FTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCM 377
           ++     +LN G + EA ++ Y  M + G SP + TY  +LRGL +   + +AKE  +C+
Sbjct: 402 YS----AMLN-GSVHEAFSV-YDNMEKYGCSPDVYTYRNLLRGLCKGGHLVQAKEFMSCI 455

Query: 378 LGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKI 437
           + I    D  T   ++ G+C    LDEA    + +V  + I D + Y  ++ G CR GKI
Sbjct: 456 VHIPSAIDQKTLNALLLGICNHGSLDEALDLCEKMVTINFIPDIHTYTILLSGFCRKGKI 515

Query: 438 HEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR-KNGLNPDAVTW 494
             AV  L  +++ G+ P+IV Y  ++ G  K    + A  + +E+  K G+  D + +
Sbjct: 516 VPAVILLQMMLEKGLVPDIVTYTCLLKGLIKEGQVKAASYLFQEIICKEGMYADCIAY 573



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 112/497 (22%), Positives = 211/497 (42%), Gaps = 45/497 (9%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           +C    + EA  L   M +   +P++ +YT L+ G+CR G++  A  +   M   G++P+
Sbjct: 474 ICNHGSLDEALDLCEKMVTINFIPDIHTYTILLSGFCRKGKIVPAVILLQMMLEKGLVPD 533

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY+ L++G+++   V+ A+ L  ++                       +C+EG   + 
Sbjct: 534 IVTYTCLLKGLIKEGQVKAASYLFQEI-----------------------ICKEGMYADC 570

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
                            A   M++   ++G+ H     +Y M +  + P+  SYN ++HG
Sbjct: 571 I----------------AYNSMMNGYLKAGKLHKVEMTIYDMNQNKVYPNPASYNILMHG 614

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
             K G   R+  L ++ ++ G  P+  TY++L+ GL     +E A K L  M+ +     
Sbjct: 615 HIKKGHLSRSIYLYKDMVRKGIKPTNVTYRLLILGLSKHGMIEIAVKFLDKMVLEGIYPD 674

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
               ++ + A       ++ L +   M      P   T + +ING  +   ++ +  VL 
Sbjct: 675 RLSFDVLINAFSEKSRMSDALQLFNCMKWLYMSPSSKTYSAMINGLIRKNWLQHSCDVLR 734

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
           DMV      P    +  +I      G I  A  L  + M   G  P  V  ++++RGL +
Sbjct: 735 DMVESGL-EPKHTHYIALINAKCRFGDINGAFRL-KEEMTALGIVPAEVADSSIVRGLSK 792

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 423
             +VEE   VF  ++  G+V    T+  ++ GLC+  ++ +A      +       D   
Sbjct: 793 CGKVEEGIIVFCSIIRAGMVPTIATFTTLMHGLCKEAKISDALHLKSLMESCGLKIDVVT 852

Query: 424 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483
           Y  +I GLC+   + +A+    E+   G+ PN+  Y  + +         E  ++L ++ 
Sbjct: 853 YNVLITGLCKIQCVSDALELYEEMKSKGLRPNVTTYTTLTEAIYGTGRTLEGEKLLNDIE 912

Query: 484 KNGLNPDAV----TWRI 496
             GL P        WR+
Sbjct: 913 DRGLVPSYTDQCPEWRM 929



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 105/389 (26%), Positives = 171/389 (43%), Gaps = 41/389 (10%)

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
           ++++  +  R   AS  +  M   G   S  + N++++ L + G     +  L+EG+   
Sbjct: 161 LVNAYVKEKRVVDASMAILFMDNCGFKASAHACNAVLNALVEIGESKHVWFFLKEGLVRK 220

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS-----------------KKDVDRTRIC 247
           +     T  +++  +C E +L+ A+ ++  M S                 KK   +  +C
Sbjct: 221 FPLDVTTCNIVLNSMCIEGNLKGAKHMIHKMKSCSLPNVITYNTILHWYVKKGRFKAAMC 280

Query: 248 -----------------NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFC 290
                            NI +  LC +K  T    +L  M      PD  T NT+I GF 
Sbjct: 281 VLEDMEKNGVEADVYTYNIMIDKLCKMKRSTHAYLLLKRMRGDNLAPDECTYNTLIKGFF 340

Query: 291 KMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG 350
              ++  A+ + N+M+      P   T+TT+I G    G I EAL +LY+ M   G  P 
Sbjct: 341 DESKMMLAIHIFNEMLRQGL-KPSLATYTTLIDGYCRNGTIDEALRVLYE-MQVAGVKPS 398

Query: 351 IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD 410
            VTY+A+L G      V EA  V++ M   G   D  TY  ++ GLC+   L +AK F  
Sbjct: 399 EVTYSAMLNG-----SVHEAFSVYDNMEKYGCSPDVYTYRNLLRGLCKGGHLVQAKEFMS 453

Query: 411 DIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLS 470
            IV   +  D     A++ G+C  G + EA+    ++V     P+I  Y +++ G C+  
Sbjct: 454 CIVHIPSAIDQKTLNALLLGICNHGSLDEALDLCEKMVTINFIPDIHTYTILLSGFCRKG 513

Query: 471 MKREAYQILREMRKNGLNPDAVTWRILDK 499
               A  +L+ M + GL PD VT+  L K
Sbjct: 514 KIVPAVILLQMMLEKGLVPDIVTYTCLLK 542



 Score = 44.7 bits (104), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 1/87 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M  LC  +++ +A  L   M+S G   +VV+Y  LI G C+   +  A ++++EM+  G+
Sbjct: 822 MHGLCKEAKISDALHLKSLMESCGLKIDVVTYNVLITGLCKIQCVSDALELYEEMKSKGL 881

Query: 61  LPNSLTYSVLVRGVLRT-RDVERANVL 86
            PN  TY+ L   +  T R +E   +L
Sbjct: 882 RPNVTTYTTLTEAIYGTGRTLEGEKLL 908


>gi|255542744|ref|XP_002512435.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548396|gb|EEF49887.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 546

 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 100/356 (28%), Positives = 184/356 (51%), Gaps = 5/356 (1%)

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQ---LLEEGI 201
           +I+ LC+ G+ + A  ++  M+ RG++ ++++YN+++ G CK G   + Y+   +L+E  
Sbjct: 169 VINGLCKVGKLNKAGDIIEDMKVRGVSANVITYNTLIDGYCKMGKIGKMYKADAILKEMR 228

Query: 202 QFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPT 261
             G  P+E T+ +L++G C + ++  A KV   M  +         N  +  LC      
Sbjct: 229 ADGICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVN 288

Query: 262 ELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTI 321
           E   +   M+ +  +P++IT N ++NGFCK   +++A ++ +DM   +   P+  T+  +
Sbjct: 289 EATALRDQMVNSCLKPNIITHNALLNGFCKNKMVKQAGELFDDM-PKQGITPNVTTYNIL 347

Query: 322 IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG 381
           I        +++A   LY++M  +G  P + TYN ++ GL R   +E A+ + + M    
Sbjct: 348 IDAYCKDENMEDAF-ALYRIMLGKGVCPDVSTYNCLIAGLCRKGDLEAARNLVSEMDTKH 406

Query: 382 VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAV 441
           + AD  TY I+ID LC   ++ +A R  D++           Y  MI G C+ G +  A+
Sbjct: 407 LKADLITYNILIDSLCNKGEMKKALRLLDEMCRKGLKPSQLTYNTMIDGYCKEGNLRAAL 466

Query: 442 HFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           +   ++   G   N+  YNV+I G CK     +A  +L EM + GL P+ +T+ I+
Sbjct: 467 NLRSQMEKVGRLANVATYNVLIKGFCKKDKLEDANGLLNEMLEKGLIPNRMTYEIV 522



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 107/381 (28%), Positives = 183/381 (48%), Gaps = 8/381 (2%)

Query: 122 EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
           E F+ A D     SV    +C  ++  L + G       V   M +R + P+L+S+N ++
Sbjct: 114 EAFKRASDYGLKLSVT---SCNPLMSGLVKVGEIGDMEFVYKEMIRRRIEPTLISFNIVI 170

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESD---LEKARKVLQFMLSK 238
           +GLCK G   +A  ++E+    G   +  TY  L++G C       + KA  +L+ M + 
Sbjct: 171 NGLCKVGKLNKAGDIIEDMKVRGVSANVITYNTLIDGYCKMGKIGKMYKADAILKEMRAD 230

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
                    NI +   C  KN +  + V   M +   +P+V+T N++ING C  G++ EA
Sbjct: 231 GICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEA 290

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
              L D +      P+ +T   ++ G      +++A   L+  MP++G +P + TYN ++
Sbjct: 291 -TALRDQMVNSCLKPNIITHNALLNGFCKNKMVKQA-GELFDDMPKQGITPNVTTYNILI 348

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 418
               +   +E+A  ++  MLG GV  D +TY  +I GLC    L+ A+    ++      
Sbjct: 349 DAYCKDENMEDAFALYRIMLGKGVCPDVSTYNCLIAGLCRKGDLEAARNLVSEMDTKHLK 408

Query: 419 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI 478
            D   Y  +I  LC  G++ +A+  L E+   G+ P+ + YN +IDG CK    R A  +
Sbjct: 409 ADLITYNILIDSLCNKGEMKKALRLLDEMCRKGLKPSQLTYNTMIDGYCKEGNLRAALNL 468

Query: 479 LREMRKNGLNPDAVTWRILDK 499
             +M K G   +  T+ +L K
Sbjct: 469 RSQMEKVGRLANVATYNVLIK 489



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 104/400 (26%), Positives = 205/400 (51%), Gaps = 11/400 (2%)

Query: 4   LCGLSRVGEAHKLFF---DMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           + GL +VGE   + F   +M  R   P ++S+  +I+G C+ G+++ A  + ++M+  GV
Sbjct: 135 MSGLVKVGEIGDMEFVYKEMIRRRIEPTLISFNIVINGLCKVGKLNKAGDIIEDMKVRGV 194

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKE--EEDLSVNNAAFANLVDSLCREG 118
             N +TY+ L+ G  +   + +    M+K    +KE   + +  N   F  L+D  C++ 
Sbjct: 195 SANVITYNTLIDGYCKMGKIGK----MYKADAILKEMRADGICPNEVTFNILIDGFCKDK 250

Query: 119 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 178
            V+   ++  +M +            +I+ LC +G+ + A+ +   M    L P+++++N
Sbjct: 251 NVSAAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEATALRDQMVNSCLKPNIITHN 310

Query: 179 SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
           ++++G CK+    +A +L ++  + G  P+  TY +L++  C + ++E A  + + ML K
Sbjct: 311 ALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNILIDAYCKDENMEDAFALYRIMLGK 370

Query: 239 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
                    N  +  LC   +     N++  M     + D+IT N +I+  C  G +++A
Sbjct: 371 GVCPDVSTYNCLIAGLCRKGDLEAARNLVSEMDTKHLKADLITYNILIDSLCNKGEMKKA 430

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
           L++L++M   K   P  +T+ T+I G    G ++ ALNL  Q M + G    + TYN ++
Sbjct: 431 LRLLDEMCR-KGLKPSQLTYNTMIDGYCKEGNLRAALNLRSQ-MEKVGRLANVATYNVLI 488

Query: 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE 398
           +G  +  ++E+A  + N ML  G++ +  TY IV + + E
Sbjct: 489 KGFCKKDKLEDANGLLNEMLEKGLIPNRMTYEIVTEEMME 528



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 91/345 (26%), Positives = 165/345 (47%), Gaps = 11/345 (3%)

Query: 1   MDQLCGLSRVGEAHK---LFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRH 57
           +D  C + ++G+ +K   +  +M++ G  PN V++  LI G+C+   +  A KVF EM  
Sbjct: 205 IDGYCKMGKIGKMYKADAILKEMRADGICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNR 264

Query: 58  CGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCRE 117
            GV PN +TY+ L+ G+     V  A  L  ++         L  N      L++  C+ 
Sbjct: 265 QGVKPNVVTYNSLINGLCNNGKVNEATALRDQMVNSC-----LKPNIITHNALLNGFCKN 319

Query: 118 GYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 177
             V +   + +DMP+            +ID+ C+      A  +  +M  +G+ P + +Y
Sbjct: 320 KMVKQAGELFDDMPKQGITPNVTTYNILIDAYCKDENMEDAFALYRIMLGKGVCPDVSTY 379

Query: 178 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH-TYKVLVEGLCGESDLEKARKVLQFML 236
           N ++ GLC+ G    A  L+ E +   +L ++  TY +L++ LC + +++KA ++L  M 
Sbjct: 380 NCLIAGLCRKGDLEAARNLVSE-MDTKHLKADLITYNILIDSLCNKGEMKKALRLLDEMC 438

Query: 237 SKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIE 296
            K         N  +   C   N    LN+   M +     +V T N +I GFCK  ++E
Sbjct: 439 RKGLKPSQLTYNTMIDGYCKEGNLRAALNLRSQMEKVGRLANVATYNVLIKGFCKKDKLE 498

Query: 297 EALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQV 341
           +A  +LN+M+  K   P+ +T+  +   ++  G + +    LY+V
Sbjct: 499 DANGLLNEMLE-KGLIPNRMTYEIVTEEMMEKGFVPDIEGHLYKV 542


>gi|255574125|ref|XP_002527978.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532604|gb|EEF34390.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 621

 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 114/391 (29%), Positives = 185/391 (47%), Gaps = 7/391 (1%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC    + +A  L  +M   G  PN  ++ T I GYC    +D A  +F  M   GV PN
Sbjct: 170 LCNSGDLQKADCLIKEMLEIGPSPNCATFNTFIKGYCLLNNVDKALYLFSSMSDSGVKPN 229

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +T ++LV  + +   +E A  L   L E + + E   VN      L+D   + G + + 
Sbjct: 230 RVTLNILVHALCKRGLLEDAKKL---LGELLDDNEKARVNLITSTILMDGCIKNGDMVQA 286

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             I   M Q  ++ +  A   +I   C +     A      M KRGL P + +YN+++ G
Sbjct: 287 LGIWYAMSQNNTLMDSVAYNVLIHGFCLTRNMKLAYSYSCDMLKRGLLPDIFTYNTLISG 346

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LCK G    A  + +  ++ G  P + +YK++++GLC   D+ KA + L  ML K  V  
Sbjct: 347 LCKAGKLYEACYIHDVMLRMGVAPDQISYKIVIQGLCTRGDVLKANEHLHCMLEKSMVPE 406

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
             + N+ +       +     ++   ML     P+V T N +I+   K G I +A  +  
Sbjct: 407 AHVWNLIIDGFARCGDSANAFSIRDQMLSFGVVPNVFTYNALIHAQVKTGNIVDAYSLKK 466

Query: 304 DMVA-GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
            M+  G F  PD +T+  +I    N GRI  A+ L Y+ M + G+ P I+TY  ++RGL 
Sbjct: 467 MMLCHGLF--PDVITYNLLIGTACNAGRISIAVQLYYE-MLRSGHEPDIITYTELIRGLC 523

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVI 393
               ++EAKE+F  +   G+  D   + ++I
Sbjct: 524 MRGNMKEAKELFAKLQNTGLTVDHVPFQLLI 554



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 106/409 (25%), Positives = 186/409 (45%), Gaps = 4/409 (0%)

Query: 100 LSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGAS 159
           + V+ A  A+LV  LC  G +     +   +     V +      +++ LC SG    A 
Sbjct: 121 VDVSYAGHASLVRDLCLAGKLGAALWLRRKLLHKGFVPDILTHNFLVNGLCNSGDLQKAD 180

Query: 160 RVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGL 219
            ++  M + G +P+  ++N+ + G C      +A  L       G  P+  T  +LV  L
Sbjct: 181 CLIKEMLEIGPSPNCATFNTFIKGYCLLNNVDKALYLFSSMSDSGVKPNRVTLNILVHAL 240

Query: 220 CGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNP--TELLNVLVFMLQTQCQP 277
           C    LE A+K+L  +L   +  R  +    +     IKN    + L +   M Q     
Sbjct: 241 CKRGLLEDAKKLLGELLDDNEKARVNLITSTILMDGCIKNGDMVQALGIWYAMSQNNTLM 300

Query: 278 DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNL 337
           D +  N +I+GFC    ++ A     DM+  +   PD  T+ T+I GL   G++ EA   
Sbjct: 301 DSVAYNVLIHGFCLTRNMKLAYSYSCDMLK-RGLLPDIFTYNTLISGLCKAGKLYEAC-Y 358

Query: 338 LYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLC 397
           ++ VM + G +P  ++Y  V++GL     V +A E  +CML   +V ++  + ++IDG  
Sbjct: 359 IHDVMLRMGVAPDQISYKIVIQGLCTRGDVLKANEHLHCMLEKSMVPEAHVWNLIIDGFA 418

Query: 398 ESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIV 457
                  A    D ++    + + + Y A+I    ++G I +A      ++  G+ P+++
Sbjct: 419 RCGDSANAFSIRDQMLSFGVVPNVFTYNALIHAQVKTGNIVDAYSLKKMMLCHGLFPDVI 478

Query: 458 CYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
            YN++I  AC       A Q+  EM ++G  PD +T+  L +    RGN
Sbjct: 479 TYNLLIGTACNAGRISIAVQLYYEMLRSGHEPDIITYTELIRGLCMRGN 527



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 102/384 (26%), Positives = 174/384 (45%), Gaps = 35/384 (9%)

Query: 157 GASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLV 216
           G S V   +  R +  S   + S+V  LC  G    A  L  + +  G++P   T+  LV
Sbjct: 108 GISSVKVGLAGRSVDVSYAGHASLVRDLCLAGKLGAALWLRRKLLHKGFVPDILTHNFLV 167

Query: 217 EGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQ 276
            GLC   DL+KA  +++ ML           N +++  CL+ N  + L +   M  +  +
Sbjct: 168 NGLCNSGDLQKADCLIKEMLEIGPSPNCATFNTFIKGYCLLNNVDKALYLFSSMSDSGVK 227

Query: 277 PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAP-DAVTFTTIIFGLLNVGRIQEAL 335
           P+ +TLN +++  CK G +E+A K+L +++     A  + +T T ++ G +  G + +AL
Sbjct: 228 PNRVTLNILVHALCKRGLLEDAKKLLGELLDDNEKARVNLITSTILMDGCIKNGDMVQAL 287

Query: 336 NLLYQV----------------------------------MPQRGYSPGIVTYNAVLRGL 361
            + Y +                                  M +RG  P I TYN ++ GL
Sbjct: 288 GIWYAMSQNNTLMDSVAYNVLIHGFCLTRNMKLAYSYSCDMLKRGLLPDIFTYNTLISGL 347

Query: 362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
            +  ++ EA  + + ML +GV  D  +Y IVI GLC    + +A      ++  S + + 
Sbjct: 348 CKAGKLYEACYIHDVMLRMGVAPDQISYKIVIQGLCTRGDVLKANEHLHCMLEKSMVPEA 407

Query: 422 YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
           +V+  +I G  R G    A     +++  GV PN+  YN +I    K     +AY + + 
Sbjct: 408 HVWNLIIDGFARCGDSANAFSIRDQMLSFGVVPNVFTYNALIHAQVKTGNIVDAYSLKKM 467

Query: 482 MRKNGLNPDAVTWRILDKLHGNRG 505
           M  +GL PD +T+ +L     N G
Sbjct: 468 MLCHGLFPDVITYNLLIGTACNAG 491



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 111/468 (23%), Positives = 201/468 (42%), Gaps = 44/468 (9%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   ++G A  L   +  +G VP+++++  L++G C +G++  A  +  EM   G  PN
Sbjct: 135 LCLAGKLGAALWLRRKLLHKGFVPDILTHNFLVNGLCNSGDLQKADCLIKEMLEIGPSPN 194

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             T++  ++G     +V++A      L+  M  +  +  N      LV +LC+ G + + 
Sbjct: 195 CATFNTFIKGYCLLNNVDKA----LYLFSSM-SDSGVKPNRVTLNILVHALCKRGLLEDA 249

Query: 124 FRIAEDM--PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
            ++  ++     K+         ++D   ++G    A  + Y M +       V+YN ++
Sbjct: 250 KKLLGELLDDNEKARVNLITSTILMDGCIKNGDMVQALGIWYAMSQNNTLMDSVAYNVLI 309

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
           HG C       AY    + ++ G LP   TY  L+ GLC    L +A             
Sbjct: 310 HGFCLTRNMKLAYSYSCDMLKRGLLPDIFTYNTLISGLCKAGKLYEA------------- 356

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
                        C I +          ML+    PD I+   VI G C  G + +A + 
Sbjct: 357 -------------CYIHD---------VMLRMGVAPDQISYKIVIQGLCTRGDVLKANEH 394

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
           L+ M+  K   P+A  +  II G    G    A ++  Q M   G  P + TYNA++   
Sbjct: 395 LHCMLE-KSMVPEAHVWNLIIDGFARCGDSANAFSIRDQ-MLSFGVVPNVFTYNALIHAQ 452

Query: 362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
            +   + +A  +   ML  G+  D  TY ++I   C + ++  A + + +++   +  D 
Sbjct: 453 VKTGNIVDAYSLKKMMLCHGLFPDVITYNLLIGTACNAGRISIAVQLYYEMLRSGHEPDI 512

Query: 422 YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKL 469
             Y  +I+GLC  G + EA     +L ++G+T + V + ++I     L
Sbjct: 513 ITYTELIRGLCMRGNMKEAKELFAKLQNTGLTVDHVPFQLLIKNTFNL 560


>gi|224157081|ref|XP_002337799.1| predicted protein [Populus trichocarpa]
 gi|222869732|gb|EEF06863.1| predicted protein [Populus trichocarpa]
          Length = 367

 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 107/363 (29%), Positives = 176/363 (48%), Gaps = 10/363 (2%)

Query: 106 AFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVM 165
            +  L+ + CREG + E F I   M         F    +I+ LC+ GR   A  ++  M
Sbjct: 3   TYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEM 62

Query: 166 RKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDL 225
              GL+P   +YN+++   C+      A ++  E ++ G +P   ++  L+        L
Sbjct: 63  LNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLMAVFSRNRHL 122

Query: 226 EKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTV 285
           ++A    + M     V    I  + +   C   N  E L +   ML+  C  DVI  NT+
Sbjct: 123 DQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTI 182

Query: 286 INGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQR 345
           +NG CK   + +A K+ ++MV  +   PD  TFTT+I G    G + +AL+ L+  M QR
Sbjct: 183 LNGLCKEKMLTDADKLFDEMVE-RGALPDFYTFTTLIHGHCQDGNMTKALS-LFGTMTQR 240

Query: 346 GYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA 405
              P IV YN ++ G  ++  +E+A E+++ M+   +  +  TY I+I+  C    + EA
Sbjct: 241 NIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEA 300

Query: 406 KRFWDDIVW----PSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNV 461
            R WD ++     P+ +  N V    IKG CRSG   +A  FL  ++  GV P+ + YN 
Sbjct: 301 FRLWDVMIEKGIKPTLVTCNTV----IKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNT 356

Query: 462 VID 464
           +I+
Sbjct: 357 LIN 359



 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 100/368 (27%), Positives = 183/368 (49%), Gaps = 11/368 (2%)

Query: 29  VVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMF 88
           +V+Y TLI  YCR G ++ A+++ + M   G+ P+  TY+ ++ G+ +     RA  ++ 
Sbjct: 1   MVTYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILI 60

Query: 89  KLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDS 148
           ++         LS +   +  L+   CR    +E   I  +M +   V +  +   ++  
Sbjct: 61  EMLNI-----GLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLMAV 115

Query: 149 LCRSGRNHGASRVVYV--MRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL 206
             R+   H    +VY   M+K GL P  V Y  ++HG C++G  + A ++ +E ++ G +
Sbjct: 116 FSRN--RHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCV 173

Query: 207 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 266
                Y  ++ GLC E  L  A K+   M+ +  +         +   C   N T+ L++
Sbjct: 174 LDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSL 233

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
              M Q   +PD++  NT+I+GFCK+G +E+A ++ + M++ K   P+ +T+  +I    
Sbjct: 234 FGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKI-FPNHITYGILINAYC 292

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
           +VG + EA   L+ VM ++G  P +VT N V++G  R     +A E    M+  GV  D 
Sbjct: 293 SVGHVSEAFR-LWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPDH 351

Query: 387 TTYAIVID 394
            +Y  +I+
Sbjct: 352 ISYNTLIN 359



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 92/353 (26%), Positives = 168/353 (47%), Gaps = 2/353 (0%)

Query: 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 204
           +I + CR G    A  ++  M  +GL PSL +YN+I++GLCK G   RA  +L E +  G
Sbjct: 7   LIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIG 66

Query: 205 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL 264
             P   TY  L+   C   +  +A+++   ML +  V      +  +      ++  + L
Sbjct: 67  LSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLMAVFSRNRHLDQAL 126

Query: 265 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 324
                M +    PD +    +++G+C+ G + EALK+ ++M+  + C  D + + TI+ G
Sbjct: 127 VYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLE-QGCVLDVIAYNTILNG 185

Query: 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 384
           L     + +A + L+  M +RG  P   T+  ++ G  +   + +A  +F  M    +  
Sbjct: 186 LCKEKMLTDA-DKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKP 244

Query: 385 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFL 444
           D   Y  +IDG C+  ++++A   WD ++      ++  Y  +I   C  G + EA    
Sbjct: 245 DIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLW 304

Query: 445 YELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
             +++ G+ P +V  N VI G C+     +A + L  M   G+ PD +++  L
Sbjct: 305 DVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTL 357



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 158/322 (49%), Gaps = 6/322 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC   R   A  +  +M + G  P+  +Y TL+   CR      A ++F EM   GV
Sbjct: 43  INGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGV 102

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +P+ +++S L+    R R +++A V     + R  ++  L  +N  +  L+   CR G +
Sbjct: 103 VPDLVSFSSLMAVFSRNRHLDQALV-----YFRDMKKFGLVPDNVIYTVLMHGYCRNGNM 157

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E  +I ++M +   V +  A   +++ LC+      A ++   M +RG  P   ++ ++
Sbjct: 158 LEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTL 217

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +HG C+ G   +A  L     Q    P    Y  L++G C   ++EKA ++   M+S+K 
Sbjct: 218 IHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKI 277

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                   I + A C + + +E   +   M++   +P ++T NTVI G+C+ G   +A +
Sbjct: 278 FPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADE 337

Query: 301 VLNDMVAGKFCAPDAVTFTTII 322
            L  M+A K  APD +++ T+I
Sbjct: 338 FLGRMIA-KGVAPDHISYNTLI 358



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 80/321 (24%), Positives = 157/321 (48%), Gaps = 4/321 (1%)

Query: 174 LVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQ 233
           +V+YN+++   C+ G    A++++      G  PS  TY  ++ GLC +    +A+ +L 
Sbjct: 1   MVTYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILI 60

Query: 234 FMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMG 293
            ML+      T   N  L   C   N +E   +   ML+    PD+++ ++++  F +  
Sbjct: 61  EMLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLMAVFSRNR 120

Query: 294 RIEEALKVLNDMVAGKF-CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIV 352
            +++AL    DM   KF   PD V +T ++ G    G + EAL +  +++ Q G    ++
Sbjct: 121 HLDQALVYFRDM--KKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQ-GCVLDVI 177

Query: 353 TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI 412
            YN +L GL + + + +A ++F+ M+  G + D  T+  +I G C+   + +A   +  +
Sbjct: 178 AYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTM 237

Query: 413 VWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMK 472
              +   D   Y  +I G C+ G++ +A      ++   + PN + Y ++I+  C +   
Sbjct: 238 TQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHV 297

Query: 473 REAYQILREMRKNGLNPDAVT 493
            EA+++   M + G+ P  VT
Sbjct: 298 SEAFRLWDVMIEKGIKPTLVT 318



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 75/228 (32%), Positives = 120/228 (52%), Gaps = 2/228 (0%)

Query: 279 VITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLL 338
           ++T NT+I  +C+ G +EEA +++N M A K   P   T+  II GL   GR   A  +L
Sbjct: 1   MVTYNTLIGAYCREGLLEEAFEIMNSM-ADKGLKPSLFTYNAIINGLCKKGRYARAKGIL 59

Query: 339 YQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE 398
            + M   G SP   TYN +L    R     EAKE+F  ML  GVV D  +++ ++     
Sbjct: 60  IE-MLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLMAVFSR 118

Query: 399 SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVC 458
           +  LD+A  ++ D+     + DN +Y  ++ G CR+G + EA+    E+++ G   +++ 
Sbjct: 119 NRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIA 178

Query: 459 YNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           YN +++G CK  M  +A ++  EM + G  PD  T+  L   H   GN
Sbjct: 179 YNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGN 226



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 99/182 (54%), Gaps = 5/182 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++ LC    + +A KLF +M  RG +P+  ++TTLIHG+C+ G M  A  +F  M    +
Sbjct: 183 LNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNI 242

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P+ + Y+ L+ G  +  ++E+A+    +LW+ M   + +  N+  +  L+++ C  G+V
Sbjct: 243 KPDIVAYNTLIDGFCKVGEMEKAS----ELWDGMISRK-IFPNHITYGILINAYCSVGHV 297

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E FR+ + M +         C  +I   CRSG +  A   +  M  +G+ P  +SYN++
Sbjct: 298 SEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTL 357

Query: 181 VH 182
           ++
Sbjct: 358 IN 359


>gi|388521091|gb|AFK48607.1| unknown [Medicago truncatula]
          Length = 506

 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 109/440 (24%), Positives = 217/440 (49%), Gaps = 11/440 (2%)

Query: 63  NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 122
           N + YS  +     + DV+ A  L   L       ++ ++    F  ++ SL +  + + 
Sbjct: 33  NFIPYSS-ISTTFHSNDVDGAVSLFNSLLH-----QNPTLTAFEFNKILGSLVKSKHYHT 86

Query: 123 VFRIAEDMPQGKSVNEEFACGH-MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 181
           V  +++ M + + +N  F   + +I+  C+ G    A  V+  + K G  P +++ N+ +
Sbjct: 87  VLSLSQQM-EFEGINPNFVTFNILINCFCQLGLIPFAFSVLAKILKMGYEPDIITLNTFI 145

Query: 182 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 241
            G C  G   +A    ++ +  G+   + +Y  L+ GLC   +   A ++L+ +  K   
Sbjct: 146 KGFCLKGQIHQALNFHDKLVALGFHLDQVSYGTLINGLCKVGETRAALQLLRRVDGKLVQ 205

Query: 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 301
               + N  +  +   K+  +  ++   M+  +  PDV+T + +I GF  +G++++A+ +
Sbjct: 206 LNAVMYNTVIDGMSKDKHVNDAFDLYSEMVAKRISPDVVTYSALIRGFFIVGKLKDAIDL 265

Query: 302 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361
            N M+      PD  TF  ++ G    GR+++A N+L  +M Q    P + T+N ++ G 
Sbjct: 266 FNKMILEN-IKPDVYTFNILVDGFCKEGRLKKAKNVLDMMMIQ-DIKPNVSTFNTLVDGF 323

Query: 362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 421
            + R+++E K VF  M+  G+  +  TY  ++DG C   Q+++AK+ ++ +       + 
Sbjct: 324 CKDRKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKAKKIFNTMSQRGVTANV 383

Query: 422 YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
           + Y  MI G C+  K+ +A+    E+    + P++V YN +IDG CK      A+Q++ E
Sbjct: 384 HSYNIMINGFCKIKKVDKAMKLFIEMHHKHIIPDVVTYNSLIDGLCKSGKISYAFQLVNE 443

Query: 482 MRKNGLNPDAVTWR-ILDKL 500
           M   G  P+ +T+  IL+ L
Sbjct: 444 MHDRGQPPNIITYNSILNAL 463



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 114/476 (23%), Positives = 233/476 (48%), Gaps = 28/476 (5%)

Query: 28  NVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLM 87
           N + Y+++   +  + ++D A  +F+ + H      +  ++ ++  +++++        +
Sbjct: 33  NFIPYSSISTTF-HSNDVDGAVSLFNSLLHQNPTLTAFEFNKILGSLVKSKHYHT----V 87

Query: 88  FKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMID 147
             L ++M E E ++ N   F  L++  C+ G +   F +   + +     +       I 
Sbjct: 88  LSLSQQM-EFEGINPNFVTFNILINCFCQLGLIPFAFSVLAKILKMGYEPDIITLNTFIK 146

Query: 148 SLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLE----EGIQF 203
             C  G+ H A      +   G     VSY ++++GLCK G    A QLL     + +Q 
Sbjct: 147 GFCLKGQIHQALNFHDKLVALGFHLDQVSYGTLINGLCKVGETRAALQLLRRVDGKLVQL 206

Query: 204 GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTEL 263
             +     Y  +++G+  +  +  A  +   M++K+        +  +R   ++    + 
Sbjct: 207 NAV----MYNTVIDGMSKDKHVNDAFDLYSEMVAKRISPDVVTYSALIRGFFIVGKLKDA 262

Query: 264 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF 323
           +++   M+    +PDV T N +++GFCK GR+++A  VL DM+  +   P+  TF T++ 
Sbjct: 263 IDLFNKMILENIKPDVYTFNILVDGFCKEGRLKKAKNVL-DMMMIQDIKPNVSTFNTLVD 321

Query: 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 383
           G     +++E    ++ +M ++G  P +VTY +++ G   +++V +AK++FN M   GV 
Sbjct: 322 GFCKDRKMKEG-KTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKAKKIFNTMSQRGVT 380

Query: 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
           A+  +Y I+I+G C+  ++D+A + + ++     I D   Y ++I GLC+SGKI  A   
Sbjct: 381 ANVHSYNIMINGFCKIKKVDKAMKLFIEMHHKHIIPDVVTYNSLIDGLCKSGKISYAFQL 440

Query: 444 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
           + E+ D G  PNI+ YN +++             +L +++  G+ P+  T  IL K
Sbjct: 441 VNEMHDRGQPPNIITYNSILNA------------LLTKLKDQGIQPNMHTDTILIK 484



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 97/411 (23%), Positives = 200/411 (48%), Gaps = 21/411 (5%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C L  +  A  +   +   G+ P++++  T I G+C  G++  A    D++   G   +
Sbjct: 113 FCQLGLIPFAFSVLAKILKMGYEPDIITLNTFIKGFCLKGQIHQALNFHDKLVALGFHLD 172

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            ++Y  L+ G+ +  +   A     +L  R+ + + + +N   +  ++D + ++ +VN+ 
Sbjct: 173 QVSYGTLINGLCKVGETRAA----LQLLRRV-DGKLVQLNAVMYNTVIDGMSKDKHVNDA 227

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           F +  +M   +   +      +I      G+   A  +   M    + P + ++N +V G
Sbjct: 228 FDLYSEMVAKRISPDVVTYSALIRGFFIVGKLKDAIDLFNKMILENIKPDVYTFNILVDG 287

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK-DVD 242
            CK G   +A  +L+  +     P+  T+  LV+G C +  +++ + V   M+ +    +
Sbjct: 288 FCKEGRLKKAKNVLDMMMIQDIKPNVSTFNTLVDGFCKDRKMKEGKTVFAMMMKQGIKPN 347

Query: 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
               C++ +   CL+K   +   +   M Q     +V + N +INGFCK+ ++++A+K+ 
Sbjct: 348 VVTYCSL-MDGYCLVKQVNKAKKIFNTMSQRGVTANVHSYNIMINGFCKIKKVDKAMKLF 406

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
            +M   K   PD VT+ ++I GL   G+I  A  L+ + M  RG  P I+TYN++L  L 
Sbjct: 407 IEM-HHKHIIPDVVTYNSLIDGLCKSGKISYAFQLVNE-MHDRGQPPNIITYNSILNAL- 463

Query: 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413
            L ++++           G+  +  T  I+I GLC+S +L+ A++ ++D++
Sbjct: 464 -LTKLKDQ----------GIQPNMHTDTILIKGLCQSGKLEAARKVFEDLL 503



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 121/238 (50%), Gaps = 17/238 (7%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C   R+ +A  +   M  +   PNV ++ TL+ G+C+  +M     VF  M   G+
Sbjct: 285 VDGFCKEGRLKKAKNVLDMMMIQDIKPNVSTFNTLVDGFCKDRKMKEGKTVFAMMMKQGI 344

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +TY  L+ G    + V +A     K++  M  +  ++ N  ++  +++  C+   V
Sbjct: 345 KPNVVTYCSLMDGYCLVKQVNKAK----KIFNTM-SQRGVTANVHSYNIMINGFCKIKKV 399

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           ++  ++  +M     + +      +ID LC+SG+   A ++V  M  RG  P++++YNSI
Sbjct: 400 DKAMKLFIEMHHKHIIPDVVTYNSLIDGLCKSGKISYAFQLVNEMHDRGQPPNIITYNSI 459

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK 238
           ++ L          +L ++GIQ    P+ HT  +L++GLC    LE ARKV + +L K
Sbjct: 460 LNALLT--------KLKDQGIQ----PNMHTDTILIKGLCQSGKLEAARKVFEDLLVK 505


>gi|147819071|emb|CAN69810.1| hypothetical protein VITISV_043106 [Vitis vinifera]
          Length = 847

 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 104/335 (31%), Positives = 172/335 (51%), Gaps = 24/335 (7%)

Query: 158 ASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVE 217
           A  V   M + G+ P++V+YN+++   CK G   +   LL E  + G  P++ TY VL+ 
Sbjct: 524 AVEVYRTMGEFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLIN 583

Query: 218 GLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNP-----------TELLNV 266
           GL  + + E+A+ ++  ML              L+      NP            E L++
Sbjct: 584 GLSKKGEFEQAKGLIGEMLKTG-----------LKVSAYTYNPLIYGYFNKGLLAEALSL 632

Query: 267 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326
              M+     P V T N+ I G CK+GR+ +A++ L+DM+A     PD V++ T+I+G  
Sbjct: 633 QEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLL-PDVVSYNTLIYGYC 691

Query: 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 386
            +G + +A  LL+  +      P IVTYN +L GL R   +E A+++   M+  G+  D 
Sbjct: 692 RLGNLMKAF-LLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDI 750

Query: 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE 446
            TY I+++G C+   L  A+ F+D+++      D+Y YA  I G  + G    A     E
Sbjct: 751 VTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEE 810

Query: 447 LVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481
           ++  G  P+++ YNVV+DG CKL    EA ++L++
Sbjct: 811 MLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQK 845



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 84/297 (28%), Positives = 147/297 (49%), Gaps = 5/297 (1%)

Query: 204 GYLPSEHTYKVL---VEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNP 260
           G + SE + K+L   +     +S +E+   V   M+  +     + CN  LR L      
Sbjct: 462 GCVSSEVSVKILDLLIWVYSKKSMVEQCLSVFDKMIKSRLSPDVKNCNRILRILRDKDLM 521

Query: 261 TELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTT 320
           ++ + V   M +   +P ++T NT+++ +CK G++++ L +L++M   + CAP+ VT+  
Sbjct: 522 SKAVEVYRTMGEFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEM-QRRGCAPNDVTYNV 580

Query: 321 IIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI 380
           +I GL   G  ++A  L+ +++ + G      TYN ++ G F    + EA  +   M+  
Sbjct: 581 LINGLSKKGEFEQAKGLIGEML-KTGLKVSAYTYNPLIYGYFNKGLLAEALSLQEEMVLK 639

Query: 381 GVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEA 440
           G      TY   I GLC+  ++ +A +   D++  + + D   Y  +I G CR G + +A
Sbjct: 640 GASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKA 699

Query: 441 VHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
                EL    + P IV YN ++DG C+      A Q+  EM   G+ PD VT+ IL
Sbjct: 700 FLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTIL 756



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 84/325 (25%), Positives = 148/325 (45%), Gaps = 32/325 (9%)

Query: 10  VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSV 69
           + +A +++  M   G  P +V+Y TL+  YC+ G++     +  EM+  G  PN +TY+V
Sbjct: 521 MSKAVEVYRTMGEFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNV 580

Query: 70  LVRGVLRTRDVERA-------------------NVLMFKLWERMKEEEDLSVNN------ 104
           L+ G+ +  + E+A                   N L++  + +    E LS+        
Sbjct: 581 LINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGLLAEALSLQEEMVLKG 640

Query: 105 -----AAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGAS 159
                A + + +  LC+ G +++  +   DM     + +  +   +I   CR G    A 
Sbjct: 641 ASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAF 700

Query: 160 RVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGL 219
            +   +R   L P++V+YN+++ GLC+ G    A QL  E I  G  P   TY +LV G 
Sbjct: 701 LLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGS 760

Query: 220 CGESDLEKARKVLQFMLSKK-DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPD 278
           C    L  A++    ML +  ++D        +  L L  + +   ++   ML     PD
Sbjct: 761 CKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKL-GDTSRAFSLQEEMLAKGFPPD 819

Query: 279 VITLNTVINGFCKMGRIEEALKVLN 303
           +I  N V++G CK+G +EEA ++L 
Sbjct: 820 LIIYNVVVDGLCKLGNLEEASELLQ 844



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 59/196 (30%), Positives = 99/196 (50%), Gaps = 5/196 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC L R+ +A +   DM +   +P+VVSY TLI+GYCR G +  A+ +FDE+R   + P 
Sbjct: 655 LCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPT 714

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY+ L+ G+ R  ++E A  L  ++       E ++ +   +  LV+  C+ G ++  
Sbjct: 715 IVTYNTLLDGLCRQGELEVAQQLKVEMI-----NEGIAPDIVTYTILVNGSCKMGSLSMA 769

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
               ++M       + +A    I    + G    A  +   M  +G  P L+ YN +V G
Sbjct: 770 QEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDG 829

Query: 184 LCKHGGCMRAYQLLEE 199
           LCK G    A +LL++
Sbjct: 830 LCKLGNLEEASELLQK 845



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 42/83 (50%)

Query: 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 482
            Y  ++   C+ GK+ + +  L E+   G  PN V YNV+I+G  K     +A  ++ EM
Sbjct: 542 TYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEM 601

Query: 483 RKNGLNPDAVTWRILDKLHGNRG 505
            K GL   A T+  L   + N+G
Sbjct: 602 LKTGLKVSAYTYNPLIYGYFNKG 624


>gi|297838419|ref|XP_002887091.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297332932|gb|EFH63350.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 568

 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 110/460 (23%), Positives = 215/460 (46%), Gaps = 12/460 (2%)

Query: 32  YTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLW 91
           Y  +I+ Y ++  +D +   F+EM   G +P S  ++ L+  V+ +          F  W
Sbjct: 97  YEVMINAYVQSQSLDSSISYFNEMVDKGFVPGSNCFNNLLTFVVGSSS--------FNQW 148

Query: 92  ERMKEEEDLSVN--NAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSL 149
            R   E  + V+    +F  ++   C  G + + F +  ++ +            +ID  
Sbjct: 149 WRFFNESKIKVDLDVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGC 208

Query: 150 CRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSE 209
           C+ G    A  + + M K GL  +  +Y  ++HGL K+G   + +++ E+  + G  P+ 
Sbjct: 209 CKRGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEDGVFPNL 268

Query: 210 HTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVF 269
           +TY  ++   C +   + A K+   M  +         N  +  LC      E   V+  
Sbjct: 269 YTYNCVMNQHCKDGRTKDAFKLFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQ 328

Query: 270 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG 329
           M      P++IT NT+I+GFC +G++ +AL +  D+ + +  +P  VT+  ++ G    G
Sbjct: 329 MKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKS-RGLSPSLVTYNILVSGFCKKG 387

Query: 330 RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTY 389
               A  ++ + M +RG  P  +TY  ++    R+  +E+A ++ + M  +G+  D  TY
Sbjct: 388 DTSGAGKVVKE-MEERGIKPSKITYTILIDTFARMDNMEKAIQLRSPMEELGLTPDVHTY 446

Query: 390 AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449
           +++I G C   Q++EA R +  +V      +  +Y  M+ G C+ G  + A+    E+ +
Sbjct: 447 SVLIHGFCIKGQMNEASRLFKLMVAKKLEPNKVIYNTMVLGYCKEGSSYRALRLFREMEE 506

Query: 450 SGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNP 489
             + PN+  Y  +I+  CK    +EA  ++ +M   G++P
Sbjct: 507 KELPPNVASYRYMIEVLCKERKSKEAEGLVEKMIDTGIDP 546



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 106/380 (27%), Positives = 200/380 (52%), Gaps = 11/380 (2%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C    + ++  L  +++  G  PNVV YTTLI G C+ GE++ A  +F EM   G++ N 
Sbjct: 174 CEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKRGEIEKAKDLFFEMGKFGLVANE 233

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
            TY+VL+ G+ +    ++     F+++E+M +E+ +  N   +  +++  C++G   + F
Sbjct: 234 WTYTVLIHGLFKNGIKKQG----FEMYEKM-QEDGVFPNLYTYNCVMNQHCKDGRTKDAF 288

Query: 125 RIAEDM-PQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           ++ ++M  +G S N       +I  LCR  + + A++V+  M+  G+ P+L++YN+++ G
Sbjct: 289 KLFDEMRERGVSCN-IVTYNTLIGGLCREMKANEANKVMDQMKSDGINPNLITYNTLIDG 347

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            C  G   +A  L  +    G  PS  TY +LV G C + D   A KV++ M  ++ +  
Sbjct: 348 FCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEM-EERGIKP 406

Query: 244 TRIC-NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 302
           ++I   I +     + N  + + +   M +    PDV T + +I+GFC  G++ EA ++ 
Sbjct: 407 SKITYTILIDTFARMDNMEKAIQLRSPMEELGLTPDVHTYSVLIHGFCIKGQMNEASRLF 466

Query: 303 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362
             MVA K   P+ V + T++ G    G    AL  L++ M ++   P + +Y  ++  L 
Sbjct: 467 KLMVAKKL-EPNKVIYNTMVLGYCKEGSSYRALR-LFREMEEKELPPNVASYRYMIEVLC 524

Query: 363 RLRRVEEAKEVFNCMLGIGV 382
           + R+ +EA+ +   M+  G+
Sbjct: 525 KERKSKEAEGLVEKMIDTGI 544



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 103/438 (23%), Positives = 202/438 (46%), Gaps = 48/438 (10%)

Query: 28  NVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLM 87
           +V S+  +I G C  GE++ ++ +  E+R  G  PN + Y+ L+ G  +  ++E+A  L 
Sbjct: 162 DVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKRGEIEKAKDLF 221

Query: 88  FKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMID 147
           F++ +       L  N   +  L+  L + G   + F + E M +       +    +++
Sbjct: 222 FEMGKF-----GLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEDGVFPNLYTYNCVMN 276

Query: 148 SLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLP 207
             C+ GR   A ++   MR+RG++ ++V+YN+++ GLC+      A +++++    G  P
Sbjct: 277 QHCKDGRTKDAFKLFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSDGINP 336

Query: 208 SEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVL 267
           +  TY  L++G CG   L KA  + + + S              R L             
Sbjct: 337 NLITYNTLIDGFCGVGKLGKALSLCRDLKS--------------RGL------------- 369

Query: 268 VFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLN 327
                    P ++T N +++GFCK G    A KV+ +M   +   P  +T+T +I     
Sbjct: 370 --------SPSLVTYNILVSGFCKKGDTSGAGKVVKEM-EERGIKPSKITYTILIDTFAR 420

Query: 328 VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADST 387
           +  +++A+  L   M + G +P + TY+ ++ G     ++ EA  +F  M+   +  +  
Sbjct: 421 MDNMEKAIQ-LRSPMEELGLTPDVHTYSVLIHGFCIKGQMNEASRLFKLMVAKKLEPNKV 479

Query: 388 TYAIVIDGLCESNQLDEAKRFW---DDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFL 444
            Y  ++ G C+      A R +   ++   P N+     Y  MI+ LC+  K  EA   +
Sbjct: 480 IYNTMVLGYCKEGSSYRALRLFREMEEKELPPNVAS---YRYMIEVLCKERKSKEAEGLV 536

Query: 445 YELVDSGVTPNIVCYNVV 462
            +++D+G+ P+    N++
Sbjct: 537 EKMIDTGIDPSDSILNLI 554



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/323 (26%), Positives = 157/323 (48%), Gaps = 7/323 (2%)

Query: 177 YNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFML 236
           Y  +++   +      +     E +  G++P  + +  L+  + G S   +  +      
Sbjct: 97  YEVMINAYVQSQSLDSSISYFNEMVDKGFVPGSNCFNNLLTFVVGSSSFNQWWRFFNESK 156

Query: 237 SKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIE 296
            K D+D      I ++  C      +  ++LV + +    P+V+   T+I+G CK G IE
Sbjct: 157 IKVDLDVYSF-GIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKRGEIE 215

Query: 297 EALKVLNDMVAGKF-CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN 355
           +A  +  +M  GKF    +  T+T +I GL   G  ++   + Y+ M + G  P + TYN
Sbjct: 216 KAKDLFFEM--GKFGLVANEWTYTVLIHGLFKNGIKKQGFEM-YEKMQEDGVFPNLYTYN 272

Query: 356 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP 415
            V+    +  R ++A ++F+ M   GV  +  TY  +I GLC   + +EA +  D +   
Sbjct: 273 CVMNQHCKDGRTKDAFKLFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMK-S 331

Query: 416 SNIHDNYV-YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKRE 474
             I+ N + Y  +I G C  GK+ +A+    +L   G++P++V YN+++ G CK      
Sbjct: 332 DGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSG 391

Query: 475 AYQILREMRKNGLNPDAVTWRIL 497
           A ++++EM + G+ P  +T+ IL
Sbjct: 392 AGKVVKEMEERGIKPSKITYTIL 414



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 82/316 (25%), Positives = 136/316 (43%), Gaps = 40/316 (12%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           M+Q C   R  +A KLF +M+ RG   N+V+Y TLI G CR  + + A KV D+M+  G+
Sbjct: 275 MNQHCKDGRTKDAFKLFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSDGI 334

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            PN +TY+ L+ G      + +A  L   L  R      LS +   +  LV   C++   
Sbjct: 335 NPNLITYNTLIDGFCGVGKLGKALSLCRDLKSR-----GLSPSLVTYNILVSGFCKK--- 386

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
                                           G   GA +VV  M +RG+ PS ++Y  +
Sbjct: 387 --------------------------------GDTSGAGKVVKEMEERGIKPSKITYTIL 414

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           +    +     +A QL     + G  P  HTY VL+ G C +  + +A ++ + M++KK 
Sbjct: 415 IDTFARMDNMEKAIQLRSPMEELGLTPDVHTYSVLIHGFCIKGQMNEASRLFKLMVAKKL 474

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                I N  +   C   +    L +   M + +  P+V +   +I   CK  + +EA  
Sbjct: 475 EPNKVIYNTMVLGYCKEGSSYRALRLFREMEEKELPPNVASYRYMIEVLCKERKSKEAEG 534

Query: 301 VLNDMVAGKFCAPDAV 316
           ++  M+       D++
Sbjct: 535 LVEKMIDTGIDPSDSI 550



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 121/232 (52%), Gaps = 2/232 (0%)

Query: 278 DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNL 337
           DV +   VI G C+ G IE++  +L ++    F +P+ V +TT+I G    G I++A +L
Sbjct: 162 DVYSFGIVIKGCCEAGEIEKSFDLLVELREFGF-SPNVVIYTTLIDGCCKRGEIEKAKDL 220

Query: 338 LYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLC 397
            ++ M + G      TY  ++ GLF+    ++  E++  M   GV  +  TY  V++  C
Sbjct: 221 FFE-MGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEDGVFPNLYTYNCVMNQHC 279

Query: 398 ESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIV 457
           +  +  +A + +D++       +   Y  +I GLCR  K +EA   + ++   G+ PN++
Sbjct: 280 KDGRTKDAFKLFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSDGINPNLI 339

Query: 458 CYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGNDFG 509
            YN +IDG C +    +A  + R+++  GL+P  VT+ IL      +G+  G
Sbjct: 340 TYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSG 391



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 67/250 (26%), Positives = 124/250 (49%), Gaps = 5/250 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   +  EA+K+   MKS G  PN+++Y TLI G+C  G++  A  +  +++  G+ P+
Sbjct: 313 LCREMKANEANKVMDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPS 372

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +TY++LV G  +  D   A  ++ ++     EE  +  +   +  L+D+  R   + + 
Sbjct: 373 LVTYNILVSGFCKKGDTSGAGKVVKEM-----EERGIKPSKITYTILIDTFARMDNMEKA 427

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            ++   M +     +      +I   C  G+ + ASR+  +M  + L P+ V YN++V G
Sbjct: 428 IQLRSPMEELGLTPDVHTYSVLIHGFCIKGQMNEASRLFKLMVAKKLEPNKVIYNTMVLG 487

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            CK G   RA +L  E  +    P+  +Y+ ++E LC E   ++A  +++ M+       
Sbjct: 488 YCKEGSSYRALRLFREMEEKELPPNVASYRYMIEVLCKERKSKEAEGLVEKMIDTGIDPS 547

Query: 244 TRICNIYLRA 253
             I N+  RA
Sbjct: 548 DSILNLISRA 557


>gi|297840249|ref|XP_002888006.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297333847|gb|EFH64265.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 485

 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 118/478 (24%), Positives = 227/478 (47%), Gaps = 45/478 (9%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           EA  LF +M     +P++V ++ L+    ++   D+   +F  M  CG+  +  TY++++
Sbjct: 52  EAIDLFCNMIQSRPLPSIVEFSKLLSNIAKSKNYDLVISLFHNMEICGIGHDLYTYNIVI 111

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP 131
             + R      A  ++ K+ +   E + ++V     ++L++  C+   V     +   M 
Sbjct: 112 NCLCRCSRFVIALSVVGKMMKFGYEPDVVTV-----SSLINGFCQGNRVFGAVDLVSKME 166

Query: 132 QGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCM 191
           + +   +      +ID  C++G  + A  +   M + G+    V+YNS+V GLC  G   
Sbjct: 167 EMRCKLDVVIYNTIIDGFCKTGLVNNALVLFGRMERDGVRADTVTYNSLVTGLCCSGRRS 226

Query: 192 RAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYL 251
            A +L+ + +    +P+  T+  L+     E    +A+K  + M+ +             
Sbjct: 227 DAARLMRDMVMRDIVPNVITFTALINAFVREGKFLEAKKFYEEMIRR------------- 273

Query: 252 RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC 311
              C+                    PDV T N++I+G C  G+++EA ++L D++  K C
Sbjct: 274 ---CI-------------------DPDVFTYNSMIHGLCMHGQVDEAKQIL-DLMVTKGC 310

Query: 312 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK 371
            PD VT+ T+I G     R+ E   L+ + M QRG     VT+N +++G F+  R + A+
Sbjct: 311 FPDVVTYNTLINGFCKTKRVDEGTKLVRE-MSQRGLVVDTVTFNTIIQGYFQAGRPDAAQ 369

Query: 372 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 431
           E+F+ M   G   +  TY+I++ GLC + ++++A   ++ +       D   Y  +I G+
Sbjct: 370 EIFSRM---GSRPNIRTYSILLYGLCYNWRVEKALVLFESMQKSEMELDITTYNIVIHGM 426

Query: 432 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNP 489
           C  G + +A      L   G+ P++V Y  +I G C+  +  +A  + R+M+++GL P
Sbjct: 427 CMIGNVEDAWDLFCSLSFKGLEPDVVTYTTMISGFCRKRLWDKADFLYRKMQEDGLLP 484



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 102/407 (25%), Positives = 183/407 (44%), Gaps = 52/407 (12%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC  SR   A  +   M   G+ P+VV+ ++LI+G+C+   +  A  +  +M       +
Sbjct: 114 LCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFGAVDLVSKMEEMRCKLD 173

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            + Y+ ++ G  +T  V  A VL  ++     E + +  +   + +LV  LC  G  ++ 
Sbjct: 174 VVIYNTIIDGFCKTGLVNNALVLFGRM-----ERDGVRADTVTYNSLVTGLCCSGRRSDA 228

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
            R+  DM     V        +I++  R G+   A +    M +R + P + +YNS++HG
Sbjct: 229 ARLMRDMVMRDIVPNVITFTALINAFVREGKFLEAKKFYEEMIRRCIDPDVFTYNSMIHG 288

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
           LC HG    A Q+L+  +  G  P   TY  L+ G C    +++  K+++ M  +  V  
Sbjct: 289 LCMHGQVDEAKQILDLMVTKGCFPDVVTYNTLINGFCKTKRVDEGTKLVREMSQRGLV-- 346

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
                                             D +T NT+I G+ + GR + A ++ +
Sbjct: 347 ---------------------------------VDTVTFNTIIQGYFQAGRPDAAQEIFS 373

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            M +     P+  T++ +++GL    R+++AL +L++ M +      I TYN V+ G+  
Sbjct: 374 RMGS----RPNIRTYSILLYGLCYNWRVEKAL-VLFESMQKSEMELDITTYNIVIHGMCM 428

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD 410
           +  VE+A ++F  +   G+  D  TY  +I G C        KR WD
Sbjct: 429 IGNVEDAWDLFCSLSFKGLEPDVVTYTTMISGFCR-------KRLWD 468



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 78/250 (31%), Positives = 134/250 (53%), Gaps = 2/250 (0%)

Query: 248 NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA 307
           NI +  LC        L+V+  M++   +PDV+T++++INGFC+  R+  A+ +++ M  
Sbjct: 108 NIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFGAVDLVSKMEE 167

Query: 308 GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRV 367
            + C  D V + TII G    G +  AL +L+  M + G     VTYN+++ GL    R 
Sbjct: 168 MR-CKLDVVIYNTIIDGFCKTGLVNNAL-VLFGRMERDGVRADTVTYNSLVTGLCCSGRR 225

Query: 368 EEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAM 427
            +A  +   M+   +V +  T+  +I+      +  EAK+F+++++      D + Y +M
Sbjct: 226 SDAARLMRDMVMRDIVPNVITFTALINAFVREGKFLEAKKFYEEMIRRCIDPDVFTYNSM 285

Query: 428 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 487
           I GLC  G++ EA   L  +V  G  P++V YN +I+G CK     E  +++REM + GL
Sbjct: 286 IHGLCMHGQVDEAKQILDLMVTKGCFPDVVTYNTLINGFCKTKRVDEGTKLVREMSQRGL 345

Query: 488 NPDAVTWRIL 497
             D VT+  +
Sbjct: 346 VVDTVTFNTI 355



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 89/383 (23%), Positives = 178/383 (46%), Gaps = 7/383 (1%)

Query: 120 VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 179
           ++E   +  +M Q + +        ++ ++ +S        + + M   G+   L +YN 
Sbjct: 50  LDEAIDLFCNMIQSRPLPSIVEFSKLLSNIAKSKNYDLVISLFHNMEICGIGHDLYTYNI 109

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           +++ LC+    + A  ++ + ++FGY P   T   L+ G C  + +  A  ++  M   +
Sbjct: 110 VINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFGAVDLVSKMEEMR 169

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 299
                 I N  +   C        L +   M +   + D +T N+++ G C  GR  +A 
Sbjct: 170 CKLDVVIYNTIIDGFCKTGLVNNALVLFGRMERDGVRADTVTYNSLVTGLCCSGRRSDAA 229

Query: 300 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359
           +++ DMV      P+ +TFT +I   +  G+  EA    Y+ M +R   P + TYN+++ 
Sbjct: 230 RLMRDMVMRDI-VPNVITFTALINAFVREGKFLEAKKF-YEEMIRRCIDPDVFTYNSMIH 287

Query: 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419
           GL    +V+EAK++ + M+  G   D  TY  +I+G C++ ++DE  +   ++     + 
Sbjct: 288 GLCMHGQVDEAKQILDLMVTKGCFPDVVTYNTLINGFCKTKRVDEGTKLVREMSQRGLVV 347

Query: 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479
           D   +  +I+G  ++G+   A      +   G  PNI  Y++++ G C      +A  + 
Sbjct: 348 DTVTFNTIIQGYFQAGRPDAAQEIFSRM---GSRPNIRTYSILLYGLCYNWRVEKALVLF 404

Query: 480 REMRKNGLNPDAVTWRILDKLHG 502
             M+K+ +  D  T+ I+  +HG
Sbjct: 405 ESMQKSEMELDITTYNIV--IHG 425



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 140/292 (47%), Gaps = 10/292 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C    V  A  LF  M+  G   + V+Y +L+ G C +G    A ++  +M    +
Sbjct: 181 IDGFCKTGLVNNALVLFGRMERDGVRADTVTYNSLVTGLCCSGRRSDAARLMRDMVMRDI 240

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +PN +T++ L+   +R      A     ++  R  + +  + N     +++  LC  G V
Sbjct: 241 VPNVITFTALINAFVREGKFLEAKKFYEEMIRRCIDPDVFTYN-----SMIHGLCMHGQV 295

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E  +I + M       +      +I+  C++ R    +++V  M +RGL    V++N+I
Sbjct: 296 DEAKQILDLMVTKGCFPDVVTYNTLINGFCKTKRVDEGTKLVREMSQRGLVVDTVTFNTI 355

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFML-SKK 239
           + G  + G    A ++     + G  P+  TY +L+ GLC    +EKA  + + M  S+ 
Sbjct: 356 IQGYFQAGRPDAAQEIFS---RMGSRPNIRTYSILLYGLCYNWRVEKALVLFESMQKSEM 412

Query: 240 DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK 291
           ++D T   NI +  +C+I N  +  ++   +     +PDV+T  T+I+GFC+
Sbjct: 413 ELDITTY-NIVIHGMCMIGNVEDAWDLFCSLSFKGLEPDVVTYTTMISGFCR 463



 Score = 47.0 bits (110), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP 62
           +C +  V +A  LF  +  +G  P+VV+YTT+I G+CR    D A  ++ +M+  G+LP
Sbjct: 426 MCMIGNVEDAWDLFCSLSFKGLEPDVVTYTTMISGFCRKRLWDKADFLYRKMQEDGLLP 484


>gi|255559961|ref|XP_002520999.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539836|gb|EEF41416.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 628

 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 130/520 (25%), Positives = 223/520 (42%), Gaps = 41/520 (7%)

Query: 12  EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLV 71
           EA   F  M      P +  +  L     +  +      +   M   G+L N ++ ++L+
Sbjct: 90  EALHFFNQMIHMQTTPALSRFNNLFGALAKKKQYLHVISMCGRMNSIGLLKNFISLNILL 149

Query: 72  RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP 131
             +   + V    V+   +  +         N   F NLV  LC EG + E  R+ + M 
Sbjct: 150 NCLCSVKRVFEGFVVFGMILRK-----GYRPNTRTFTNLVKGLCLEGKIGEAVRVFKIMG 204

Query: 132 QGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVM----RKRGLT--PSLVSYNSIVHGLC 185
                     CG +I  LCR+G    A ++   M       G+   P++VSY+ I+  LC
Sbjct: 205 VFDCRPSAITCGVLISGLCRTGNTCNALKLHEAMINGNSDFGINCKPTVVSYSCIIDSLC 264

Query: 186 KHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTR 245
           K G   RA +   E  + G  P+  TY  L+ GLC  S+ E+A+++   M+    +    
Sbjct: 265 KDGLVERAKEFFVEMKEKGIFPNVVTYTSLLHGLCSASEWEEAKRLFIEMVDHGLLPDVV 324

Query: 246 ICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM 305
             ++ + ALC +    E   +   M+Q   +P   T N +I G+C  G ++E  K+   M
Sbjct: 325 TFSVLIGALCKVGKVKEASGLFDLMVQRYVEPSTRTYNILIEGYCLAGMVDEGKKIFLSM 384

Query: 306 VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTY----------- 354
           V  K C  DA +++ ++        +  A+ +LY+ M  RG  P ++TY           
Sbjct: 385 V-NKRCQHDAGSYSILMKAYCKDSEVHGAM-ILYREMMDRGIQPTVITYSKVGDARKLFG 442

Query: 355 -----------------NAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLC 397
                            N  L GL +   V EA +VF  +      ++   +  +I+G+C
Sbjct: 443 EIQFQDMVLDSISYSIYNVYLDGLCKNGCVSEALDVFYGLENCKFASNVAIFNSLINGMC 502

Query: 398 ESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIV 457
            S +L+ A   ++ +   +   D   Y  MI GLC+ G+  +A     E+ + G  PN+V
Sbjct: 503 RSEKLEIAWELFNRLCNEALQPDVVTYTIMIYGLCKVGQPQKAYDLFLEMEEKGCAPNVV 562

Query: 458 CYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            +N ++ G C  S + +  ++L +M    L+PDA T  I+
Sbjct: 563 TFNTLMRGLCLNSERPKIVELLHKMAARKLSPDASTLLIV 602



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 107/404 (26%), Positives = 187/404 (46%), Gaps = 49/404 (12%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D LC    V  A + F +MK +G  PNVV+YT+L+HG C   E + A ++F EM   G+
Sbjct: 260 IDSLCKDGLVERAKEFFVEMKEKGIFPNVVTYTSLLHGLCSASEWEEAKRLFIEMVDHGL 319

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           LP+ +T+SVL+  + +   V+ A+ L   + +R  E    + N      L++  C  G V
Sbjct: 320 LPDVVTFSVLIGALCKVGKVKEASGLFDLMVQRYVEPSTRTYN-----ILIEGYCLAGMV 374

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           +E  +I   M   +  ++  +   ++ + C+    HGA  +   M  RG+ P++++Y+ +
Sbjct: 375 DEGKKIFLSMVNKRCQHDAGSYSILMKAYCKDSEVHGAMILYREMMDRGIQPTVITYSKV 434

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
                                                      D  K    +QF     D
Sbjct: 435 ------------------------------------------GDARKLFGEIQFQDMVLD 452

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
                I N+YL  LC     +E L+V   +   +   +V   N++ING C+  ++E A +
Sbjct: 453 SISYSIYNVYLDGLCKNGCVSEALDVFYGLENCKFASNVAIFNSLINGMCRSEKLEIAWE 512

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           + N +   +   PD VT+T +I+GL  VG+ Q+A +L  + M ++G +P +VT+N ++RG
Sbjct: 513 LFNRL-CNEALQPDVVTYTIMIYGLCKVGQPQKAYDLFLE-MEEKGCAPNVVTFNTLMRG 570

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 404
           L       +  E+ + M    +  D++T  IV+D L +     E
Sbjct: 571 LCLNSERPKIVELLHKMAARKLSPDASTLLIVMDILLKDENYHE 614



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 102/405 (25%), Positives = 178/405 (43%), Gaps = 15/405 (3%)

Query: 101 SVNNAAFANLVDS--LCREGYVNEVFRIAEDMPQGKSVNEEF--ACGHMIDSLCRSG--R 154
           S++  A +NL  S  +  E ++N  F+ ++ +P   + N +        ++  C+SG   
Sbjct: 31  SLHTHAISNLKTSPKISNEQFIN--FK-SKTLPINSTPNTQSDNPLEQFLEINCKSGDFT 87

Query: 155 NHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKV 214
            H A      M     TP+L  +N++   L K    +    +       G L +  +  +
Sbjct: 88  LHEALHFFNQMIHMQTTPALSRFNNLFGALAKKKQYLHVISMCGRMNSIGLLKNFISLNI 147

Query: 215 LVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQ 274
           L+  LC    + +   V   +L K     TR     ++ LCL     E + V   M    
Sbjct: 148 LLNCLCSVKRVFEGFVVFGMILRKGYRPNTRTFTNLVKGLCLEGKIGEAVRVFKIMGVFD 207

Query: 275 CQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKF-----CAPDAVTFTTIIFGLLNVG 329
           C+P  IT   +I+G C+ G    ALK+   M+ G       C P  V+++ II  L   G
Sbjct: 208 CRPSAITCGVLISGLCRTGNTCNALKLHEAMINGNSDFGINCKPTVVSYSCIIDSLCKDG 267

Query: 330 RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTY 389
            ++ A     + M ++G  P +VTY ++L GL      EEAK +F  M+  G++ D  T+
Sbjct: 268 LVERAKEFFVE-MKEKGIFPNVVTYTSLLHGLCSASEWEEAKRLFIEMVDHGLLPDVVTF 326

Query: 390 AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449
           +++I  LC+  ++ EA   +D +V          Y  +I+G C +G + E       +V+
Sbjct: 327 SVLIGALCKVGKVKEASGLFDLMVQRYVEPSTRTYNILIEGYCLAGMVDEGKKIFLSMVN 386

Query: 450 SGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
                +   Y++++   CK S    A  + REM   G+ P  +T+
Sbjct: 387 KRCQHDAGSYSILMKAYCKDSEVHGAMILYREMMDRGIQPTVITY 431



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/261 (30%), Positives = 126/261 (48%), Gaps = 10/261 (3%)

Query: 248 NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA 307
           NI L  LC +K   E   V   +L+   +P+  T   ++ G C  G+I EA++V   M  
Sbjct: 146 NILLNCLCSVKRVFEGFVVFGMILRKGYRPNTRTFTNLVKGLCLEGKIGEAVRVFKIM-- 203

Query: 308 GKF-CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGY------SPGIVTYNAVLRG 360
           G F C P A+T   +I GL   G    AL L ++ M            P +V+Y+ ++  
Sbjct: 204 GVFDCRPSAITCGVLISGLCRTGNTCNALKL-HEAMINGNSDFGINCKPTVVSYSCIIDS 262

Query: 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 420
           L +   VE AKE F  M   G+  +  TY  ++ GLC +++ +EAKR + ++V    + D
Sbjct: 263 LCKDGLVERAKEFFVEMKEKGIFPNVVTYTSLLHGLCSASEWEEAKRLFIEMVDHGLLPD 322

Query: 421 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 480
              ++ +I  LC+ GK+ EA      +V   V P+   YN++I+G C   M  E  +I  
Sbjct: 323 VVTFSVLIGALCKVGKVKEASGLFDLMVQRYVEPSTRTYNILIEGYCLAGMVDEGKKIFL 382

Query: 481 EMRKNGLNPDAVTWRILDKLH 501
            M       DA ++ IL K +
Sbjct: 383 SMVNKRCQHDAGSYSILMKAY 403


>gi|326528911|dbj|BAJ97477.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 913

 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 118/488 (24%), Positives = 222/488 (45%), Gaps = 9/488 (1%)

Query: 13  AHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVR 72
           A   F +M++RG  PN   +T+L+H Y    +M  A    +EM+  G+    +TYS+L+ 
Sbjct: 296 ARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGALSCTEEMKAEGIELTIVTYSILIS 355

Query: 73  GVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQ 132
           G  +  D + A+ L  +    + +     +N   ++N++ + C+ G ++    +  +M +
Sbjct: 356 GFGKINDTQSADNLFKEAKTNLGD-----LNGIIYSNIIHAHCQSGNMDRAEELVHEMEE 410

Query: 133 GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRG-LTPSLVSYNSIVHGLCKHGGCM 191
              ++      H +       ++     +V+   K    TPS++SY  +++   K G   
Sbjct: 411 -DGIDAPIDAYHSMMHGYTIIQDEKKCLIVFERLKECCFTPSIISYGCLINLYVKIGKVA 469

Query: 192 RAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYL 251
           +A  + +E    G   +  TY +L+ G     D   A ++ + ML         I N+ +
Sbjct: 470 KAIAISKEMESSGIKHNNKTYSMLISGFIHLHDFTNAFRIFEEMLKSGLQPDRAIYNLLI 529

Query: 252 RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC 311
            A C + N    + +L  M + + QP       +I GF   G ++ AL +L D++    C
Sbjct: 530 EAFCKMGNMDRAIRILEKMQKERMQPSNRAFRPIIEGFAVAGDMKRALDIL-DLMRRSGC 588

Query: 312 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK 371
           AP  +T+  +I GL+   +++ A+++L + M   G +P   TY  ++RG      + +A 
Sbjct: 589 APTVMTYNALIHGLIRKNQVERAVSVLNK-MSIAGITPNEHTYTIIMRGYAATGDIAKAF 647

Query: 372 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 431
           E F  +   G+  D   Y  ++   C+S ++  A     ++       + +VY  +I G 
Sbjct: 648 EYFTKIKEGGLKLDVYIYETLLRACCKSGRMQSALAVTREMSSQKIARNTFVYNILIDGW 707

Query: 432 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 491
            R G + EA   + ++ + GV PNI  Y   I+  CK    + A  ++ EM   GL P+ 
Sbjct: 708 ARRGDVWEAADLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAQTVIDEMSDVGLKPNL 767

Query: 492 VTWRILDK 499
            T+  L K
Sbjct: 768 KTYTTLIK 775



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 116/475 (24%), Positives = 223/475 (46%), Gaps = 21/475 (4%)

Query: 27  PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVL 86
           P+   +  +I  Y + G+   A   F+ MR  G+ PN+  ++ LV      RD+  A   
Sbjct: 275 PSRREFGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGA--- 331

Query: 87  MFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVN----EEFAC 142
                E MK  E + +    ++ L+      G +N+  + A+++ +    N         
Sbjct: 332 -LSCTEEMK-AEGIELTIVTYSILISGF---GKINDT-QSADNLFKEAKTNLGDLNGIIY 385

Query: 143 GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG---LCKHGGCMRAYQLLEE 199
            ++I + C+SG    A  +V+ M + G+   + +Y+S++HG   +     C+  ++ L+E
Sbjct: 386 SNIIHAHCQSGNMDRAEELVHEMEEDGIDAPIDAYHSMMHGYTIIQDEKKCLIVFERLKE 445

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
                + PS  +Y  L+        + KA  + + M S       +  ++ +     + +
Sbjct: 446 CC---FTPSIISYGCLINLYVKIGKVAKAIAISKEMESSGIKHNNKTYSMLISGFIHLHD 502

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT 319
            T    +   ML++  QPD    N +I  FCKMG ++ A+++L  M   +   P    F 
Sbjct: 503 FTNAFRIFEEMLKSGLQPDRAIYNLLIEAFCKMGNMDRAIRILEKMQKERM-QPSNRAFR 561

Query: 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379
            II G    G ++ AL++L  +M + G +P ++TYNA++ GL R  +VE A  V N M  
Sbjct: 562 PIIEGFAVAGDMKRALDIL-DLMRRSGCAPTVMTYNALIHGLIRKNQVERAVSVLNKMSI 620

Query: 380 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 439
            G+  +  TY I++ G   +  + +A  ++  I       D Y+Y  +++  C+SG++  
Sbjct: 621 AGITPNEHTYTIIMRGYAATGDIAKAFEYFTKIKEGGLKLDVYIYETLLRACCKSGRMQS 680

Query: 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 494
           A+    E+    +  N   YN++IDG  +     EA  ++++M+++G+ P+  T+
Sbjct: 681 ALAVTREMSSQKIARNTFVYNILIDGWARRGDVWEAADLMKQMKEDGVPPNIHTY 735



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 99/418 (23%), Positives = 186/418 (44%), Gaps = 42/418 (10%)

Query: 26  VPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANV 85
            P+++SY  LI+ Y + G++  A  +  EM   G+  N+ TYS+L+ G +   D   A  
Sbjct: 449 TPSIISYGCLINLYVKIGKVAKAIAISKEMESSGIKHNNKTYSMLISGFIHLHDFTNA-- 506

Query: 86  LMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHM 145
             F+++E M +   L  + A +  L+++ C+ G ++   RI E M + +      A   +
Sbjct: 507 --FRIFEEMLKS-GLQPDRAIYNLLIEAFCKMGNMDRAIRILEKMQKERMQPSNRAFRPI 563

Query: 146 IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY 205
           I+    +G    A  ++ +MR+ G  P++++YN+++HGL +     RA  +L +    G 
Sbjct: 564 IEGFAVAGDMKRALDILDLMRRSGCAPTVMTYNALIHGLIRKNQVERAVSVLNKMSIAGI 623

Query: 206 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 265
            P+EHTY +++ G     D+ KA                            IK     L+
Sbjct: 624 TPNEHTYTIIMRGYAATGDIAKA----------------------FEYFTKIKEGGLKLD 661

Query: 266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 325
           V ++              T++   CK GR++ AL V  +M + K  A +   +  +I G 
Sbjct: 662 VYIY-------------ETLLRACCKSGRMQSALAVTREMSSQKI-ARNTFVYNILIDGW 707

Query: 326 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 385
              G + EA +L+ Q M + G  P I TY + +    +   ++ A+ V + M  +G+  +
Sbjct: 708 ARRGDVWEAADLMKQ-MKEDGVPPNIHTYTSYINACCKAGDMQRAQTVIDEMSDVGLKPN 766

Query: 386 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 443
             TY  +I G   ++  D A + ++++       D   Y  ++  L     + E   +
Sbjct: 767 LKTYTTLIKGWARASLPDRALKCFEEMKLAGLKPDEAAYHCLVTSLLSRATVMEGSTY 824



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 88/412 (21%), Positives = 168/412 (40%), Gaps = 31/412 (7%)

Query: 112 DSLCREGYVNEVFRIAEDMPQG------------KSVNEEFACGHMIDSLCRSGRNHGAS 159
           D  CRE       R+ E  P+             K    EF  G MI    + G  H A 
Sbjct: 245 DEACRE-----FRRVVESRPEDWQAVVSAFERIPKPSRREF--GLMIVYYAKRGDKHHAR 297

Query: 160 RVVYVMRKRGLTPSLVSYNSIVHGLC----KHGGCMRAYQLLEEGIQFGYLPSEHTYKVL 215
                MR RG+ P+   + S+VH         G      ++  EGI+   +    TY +L
Sbjct: 298 ATFENMRARGIEPNAFVFTSLVHAYAVARDMRGALSCTEEMKAEGIELTIV----TYSIL 353

Query: 216 VEGLCGESDLEKARKVLQFMLSK-KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQ 274
           + G    +D + A  + +   +   D++     NI + A C   N      ++  M +  
Sbjct: 354 ISGFGKINDTQSADNLFKEAKTNLGDLNGIIYSNI-IHAHCQSGNMDRAEELVHEMEEDG 412

Query: 275 CQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEA 334
               +   +++++G+  +   ++ L V   +    F  P  +++  +I   + +G++ +A
Sbjct: 413 IDAPIDAYHSMMHGYTIIQDEKKCLIVFERLKECCF-TPSIISYGCLINLYVKIGKVAKA 471

Query: 335 LNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVID 394
           + +  + M   G      TY+ ++ G   L     A  +F  ML  G+  D   Y ++I+
Sbjct: 472 IAISKE-MESSGIKHNNKTYSMLISGFIHLHDFTNAFRIFEEMLKSGLQPDRAIYNLLIE 530

Query: 395 GLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTP 454
             C+   +D A R  + +        N  +  +I+G   +G +  A+  L  +  SG  P
Sbjct: 531 AFCKMGNMDRAIRILEKMQKERMQPSNRAFRPIIEGFAVAGDMKRALDILDLMRRSGCAP 590

Query: 455 NIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
            ++ YN +I G  + +    A  +L +M   G+ P+  T+ I+ + +   G+
Sbjct: 591 TVMTYNALIHGLIRKNQVERAVSVLNKMSIAGITPNEHTYTIIMRGYAATGD 642



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 69/334 (20%), Positives = 137/334 (41%), Gaps = 43/334 (12%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C +  +  A ++   M+     P+  ++  +I G+   G+M  A  + D MR  G 
Sbjct: 529 IEAFCKMGNMDRAIRILEKMQKERMQPSNRAFRPIIEGFAVAGDMKRALDILDLMRRSGC 588

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
            P  +TY+ L+ G++R   VERA  ++ K+         ++ N   +  ++      G +
Sbjct: 589 APTVMTYNALIHGLIRKNQVERAVSVLNKM-----SIAGITPNEHTYTIIMRGYAATGDI 643

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            + F     + +G    + +    ++ + C+SGR   A  V   M  + +  +   YN +
Sbjct: 644 AKAFEYFTKIKEGGLKLDVYIYETLLRACCKSGRMQSALAVTREMSSQKIARNTFVYNIL 703

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G  + G    A  L+++  + G  P+ HTY   +   C   D+++A+ V+  M    D
Sbjct: 704 IDGWARRGDVWEAADLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAQTVIDEM---SD 760

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           V                                  +P++ T  T+I G+ +    + ALK
Sbjct: 761 VG--------------------------------LKPNLKTYTTLIKGWARASLPDRALK 788

Query: 301 VLNDM-VAGKFCAPDAVTFTTIIFGLLNVGRIQE 333
              +M +AG    PD   +  ++  LL+   + E
Sbjct: 789 CFEEMKLAG--LKPDEAAYHCLVTSLLSRATVME 820


>gi|357502007|ref|XP_003621292.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124360248|gb|ABN08261.1| Pentatricopeptide repeat [Medicago truncatula]
 gi|355496307|gb|AES77510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 738

 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 124/524 (23%), Positives = 244/524 (46%), Gaps = 86/524 (16%)

Query: 18  FDMKSRGHV---PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGV 74
           F +++R +V   PN++S+  LI+   +  E+D+A  +F   +  G++ N  TY+++++ +
Sbjct: 176 FLLQTRKNVVILPNILSFNFLINRLVKHDEVDMALCLFVRFKSFGLIFNEYTYTIVIKAL 235

Query: 75  LRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGK 134
            +  D E  NV+  ++++ MK E  +  ++  +A  ++ LC+    +  + + +D     
Sbjct: 236 CKKGDWE--NVV--RVFDEMK-EAGVDDDSYCYATFIEGLCKNNRSDLGYAVLQDYRTRN 290

Query: 135 SVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAY 194
           +   ++A   +I   C   +   A  V   M K+GL P +  Y ++VH            
Sbjct: 291 AHVHKYAYTAVIRGFCNETKLDEAESVFLEMEKQGLVPDVYVYCALVH------------ 338

Query: 195 QLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRAL 254
                                  G C   + +KA  V + M+S+       I +  L  L
Sbjct: 339 -----------------------GYCNSRNFDKALAVYKSMISRGIKTNCVIFSCILHCL 375

Query: 255 CLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPD 314
             +    E++++     ++    D    N + +  CK+G++++A+ +L+++ + +    D
Sbjct: 376 DEMGRALEVVDMFEEFKESGLFIDRKAYNILFDALCKLGKVDDAVGMLDELKSMQL-DVD 434

Query: 315 AVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVF 374
              +TT+I G    G+  EA + L++ M +RG+ P +V YN +  G FR R   EA ++ 
Sbjct: 435 MKHYTTLINGYFLQGKPIEAQS-LFKEMEERGFKPDVVAYNVLAAGFFRNRTDFEAMDLL 493

Query: 375 NCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRS 434
           N M   GV  +STT+ I+I+GLC + +++EA+ F++ +   S      +Y A++ G C +
Sbjct: 494 NYMESQGVEPNSTTHKIIIEGLCSAGKVEEAEEFFNWLKGESVEISVEIYTALVNGYCEA 553

Query: 435 GKIH----------------------------------------EAVHFLYEL-VDSGVT 453
             I                                         E  H L+ L + +G T
Sbjct: 554 ALIEKSHELKEAFILLRTMLEMNMKPSKVMYSKIFTALCCNGNMEGAHTLFNLFIHTGFT 613

Query: 454 PNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
           P+ V Y ++I+G CK +   EA+++ ++M++ G+ PDAVT+ I+
Sbjct: 614 PDAVTYTIMINGYCKTNCLPEAHELFKDMKERGITPDAVTYTIM 657



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 124/514 (24%), Positives = 234/514 (45%), Gaps = 17/514 (3%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +++L     V  A  LF   KS G + N  +YT +I   C+ G+ +   +VFDEM+  GV
Sbjct: 197 INRLVKHDEVDMALCLFVRFKSFGLIFNEYTYTIVIKALCKKGDWENVVRVFDEMKEAGV 256

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             +S  Y+  + G+ +    +    ++     R     +  V+  A+  ++   C E  +
Sbjct: 257 DDDSYCYATFIEGLCKNNRSDLGYAVLQDYRTR-----NAHVHKYAYTAVIRGFCNETKL 311

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVY-VMRKRGLTPSLVSYNS 179
           +E   +  +M +   V + +    ++   C S RN   +  VY  M  RG+  + V ++ 
Sbjct: 312 DEAESVFLEMEKQGLVPDVYVYCALVHGYCNS-RNFDKALAVYKSMISRGIKTNCVIFSC 370

Query: 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK 239
           I+H L + G  +    + EE  + G       Y +L + LC    ++ A  +L  + S +
Sbjct: 371 ILHCLDEMGRALEVVDMFEEFKESGLFIDRKAYNILFDALCKLGKVDDAVGMLDELKSMQ 430

Query: 240 -DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298
            DVD      + +    L   P E  ++   M +   +PDV+  N +  GF +     EA
Sbjct: 431 LDVDMKHYTTL-INGYFLQGKPIEAQSLFKEMEERGFKPDVVAYNVLAAGFFRNRTDFEA 489

Query: 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358
           + +LN M   +   P++ T   II GL + G+++EA    +  +        +  Y A++
Sbjct: 490 MDLLNYM-ESQGVEPNSTTHKIIIEGLCSAGKVEEAEEF-FNWLKGESVEISVEIYTALV 547

Query: 359 RGLFRLRRVE---EAKEVF---NCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI 412
            G      +E   E KE F     ML + +      Y+ +   LC +  ++ A   ++  
Sbjct: 548 NGYCEAALIEKSHELKEAFILLRTMLEMNMKPSKVMYSKIFTALCCNGNMEGAHTLFNLF 607

Query: 413 VWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMK 472
           +      D   Y  MI G C++  + EA     ++ + G+TP+ V Y ++I+G CK++  
Sbjct: 608 IHTGFTPDAVTYTIMINGYCKTNCLPEAHELFKDMKERGITPDAVTYTIMINGYCKMNCL 667

Query: 473 REAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           REA+++ ++M++ G+ PD + + ++ K   N G+
Sbjct: 668 REAHELFKDMKERGIKPDVIAYTVIIKGLLNSGH 701



 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 109/419 (26%), Positives = 197/419 (47%), Gaps = 19/419 (4%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
            C  +++ EA  +F +M+ +G VP+V  Y  L+HGYC +   D A  V+  M   G+  N
Sbjct: 305 FCNETKLDEAESVFLEMEKQGLVPDVYVYCALVHGYCNSRNFDKALAVYKSMISRGIKTN 364

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            + +S     +L   D     + +  ++E  K E  L ++  A+  L D+LC+ G V++ 
Sbjct: 365 CVIFSC----ILHCLDEMGRALEVVDMFEEFK-ESGLFIDRKAYNILFDALCKLGKVDDA 419

Query: 124 FRIAEDMPQGKSVNEEFACGH---MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
             + +++   KS+  +    H   +I+     G+   A  +   M +RG  P +V+YN +
Sbjct: 420 VGMLDEL---KSMQLDVDMKHYTTLINGYFLQGKPIEAQSLFKEMEERGFKPDVVAYNVL 476

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
             G  ++     A  LL      G  P+  T+K+++EGLC    +E+A +   ++  +  
Sbjct: 477 AAGFFRNRTDFEAMDLLNYMESQGVEPNSTTHKIIIEGLCSAGKVEEAEEFFNWLKGESV 536

Query: 241 VDRTRICNIYLRALC---LIKNPTELLNVLVF---MLQTQCQPDVITLNTVINGFCKMGR 294
                I    +   C   LI+   EL    +    ML+   +P  +  + +    C  G 
Sbjct: 537 EISVEIYTALVNGYCEAALIEKSHELKEAFILLRTMLEMNMKPSKVMYSKIFTALCCNGN 596

Query: 295 IEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTY 354
           +E A  + N  +   F  PDAVT+T +I G      + EA + L++ M +RG +P  VTY
Sbjct: 597 MEGAHTLFNLFIHTGF-TPDAVTYTIMINGYCKTNCLPEA-HELFKDMKERGITPDAVTY 654

Query: 355 NAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413
             ++ G  ++  + EA E+F  M   G+  D   Y ++I GL  S   + A + +++++
Sbjct: 655 TIMINGYCKMNCLREAHELFKDMKERGIKPDVIAYTVIIKGLLNSGHTEIAFQLYNEMI 713



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 116/480 (24%), Positives = 204/480 (42%), Gaps = 36/480 (7%)

Query: 27  PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHC-GVLPNSLTYSVLVRGVLRTRDVERANV 85
           PN  ++  L   Y       +AY  F ++++  G   N  TY+ ++R +       + + 
Sbjct: 59  PN--TFKILQKLYLYQNNPSLAYSYFTQLKNQHGFSHNIQTYTSIIRILCYYNLDRKLDS 116

Query: 86  LMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHM 145
           L   + +  K++    +N      L DSL  EG VN+V             NE+    + 
Sbjct: 117 LFLDIIDHSKQDPCFEINV-----LFDSLF-EG-VNDV-------------NEDHYLFNA 156

Query: 146 IDSLCRS--GRNHGASRVVYVMRKRG---LTPSLVSYNSIVHGLCKHGGCMRAYQLLEEG 200
            +   ++   +N     + ++++ R    + P+++S+N +++ L KH     A  L    
Sbjct: 157 FNGFVKACVSQNMFVEAIDFLLQTRKNVVILPNILSFNFLINRLVKHDEVDMALCLFVRF 216

Query: 201 IQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC-NIYLRALCLIKN 259
             FG + +E+TY ++++ LC + D E   +V   M  +  VD    C   ++  LC  KN
Sbjct: 217 KSFGLIFNEYTYTIVIKALCKKGDWENVVRVFDEM-KEAGVDDDSYCYATFIEGLC--KN 273

Query: 260 PTELLNVLVFMLQTQCQPDV--ITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVT 317
               L   V          V       VI GFC   +++EA  V  +M   +   PD   
Sbjct: 274 NRSDLGYAVLQDYRTRNAHVHKYAYTAVIRGFCNETKLDEAESVFLEM-EKQGLVPDVYV 332

Query: 318 FTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCM 377
           +  ++ G  N     +AL  +Y+ M  RG     V ++ +L  L  + R  E  ++F   
Sbjct: 333 YCALVHGYCNSRNFDKAL-AVYKSMISRGIKTNCVIFSCILHCLDEMGRALEVVDMFEEF 391

Query: 378 LGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKI 437
              G+  D   Y I+ D LC+  ++D+A    D++       D   Y  +I G    GK 
Sbjct: 392 KESGLFIDRKAYNILFDALCKLGKVDDAVGMLDELKSMQLDVDMKHYTTLINGYFLQGKP 451

Query: 438 HEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            EA     E+ + G  P++V YNV+  G  +     EA  +L  M   G+ P++ T +I+
Sbjct: 452 IEAQSLFKEMEERGFKPDVVAYNVLAAGFFRNRTDFEAMDLLNYMESQGVEPNSTTHKII 511



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 96/358 (26%), Positives = 154/358 (43%), Gaps = 52/358 (14%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
            D LC L +V +A  +  ++KS     ++  YTTLI+GY   G+   A  +F EM   G 
Sbjct: 407 FDALCKLGKVDDAVGMLDELKSMQLDVDMKHYTTLINGYFLQGKPIEAQSLFKEMEERGF 466

Query: 61  LPNSLTYSVLVRGVLRTR-DVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGY 119
            P+ + Y+VL  G  R R D E  ++L +       E + +  N+     +++ LC  G 
Sbjct: 467 KPDVVAYNVLAAGFFRNRTDFEAMDLLNY------MESQGVEPNSTTHKIIIEGLCSAGK 520

Query: 120 VNEVFRIAEDMPQGKSVNEEFAC-GHMIDSLCRSG---RNHGASRVVYVMR---KRGLTP 172
           V E      +  +G+SV         +++  C +    ++H       ++R   +  + P
Sbjct: 521 VEEAEEFF-NWLKGESVEISVEIYTALVNGYCEAALIEKSHELKEAFILLRTMLEMNMKP 579

Query: 173 SLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVL 232
           S V Y+ I   LC +G    A+ L    I  G+ P   TY +++ G C  + L +A ++ 
Sbjct: 580 SKVMYSKIFTALCCNGNMEGAHTLFNLFIHTGFTPDAVTYTIMINGYCKTNCLPEAHELF 639

Query: 233 QFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKM 292
                 KD+    I                              PD +T   +ING+CKM
Sbjct: 640 ------KDMKERGI-----------------------------TPDAVTYTIMINGYCKM 664

Query: 293 GRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG 350
             + EA ++  DM   +   PD + +T II GLLN G  + A   LY  M   G +PG
Sbjct: 665 NCLREAHELFKDM-KERGIKPDVIAYTVIIKGLLNSGHTEIAFQ-LYNEMIDMGMTPG 720



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 76/170 (44%), Gaps = 2/170 (1%)

Query: 333 EALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIV 392
           EA++ L Q        P I+++N ++  L +   V+ A  +F      G++ +  TY IV
Sbjct: 172 EAIDFLLQTRKNVVILPNILSFNFLINRLVKHDEVDMALCLFVRFKSFGLIFNEYTYTIV 231

Query: 393 IDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGV 452
           I  LC+    +   R +D++       D+Y YA  I+GLC++ +       L +      
Sbjct: 232 IKALCKKGDWENVVRVFDEMKEAGVDDDSYCYATFIEGLCKNNRSDLGYAVLQDYRTRNA 291

Query: 453 TPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 502
             +   Y  VI G C  +   EA  +  EM K GL PD   +  L  +HG
Sbjct: 292 HVHKYAYTAVIRGFCNETKLDEAESVFLEMEKQGLVPDVYVYCAL--VHG 339



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 48/84 (57%), Gaps = 10/84 (11%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C ++ + EAH+LF DMK RG  P+V++YT +I G   +G  ++A+++++EM   G+ P  
Sbjct: 662 CKMNCLREAHELFKDMKERGIKPDVIAYTVIIKGLLNSGHTEIAFQLYNEMIDMGMTP-- 719

Query: 65  LTYSVLVRGVLRTRDVERANVLMF 88
                   G    R +++AN   F
Sbjct: 720 --------GATLKRCIQKANKRQF 735


>gi|297746072|emb|CBI16128.3| unnamed protein product [Vitis vinifera]
          Length = 563

 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 120/493 (24%), Positives = 230/493 (46%), Gaps = 44/493 (8%)

Query: 8   SRVGEAHKLFFD-MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLT 66
           S++ E    +F+ M  RG VP   ++  L+    ++   + A++VF+E +   V  +  +
Sbjct: 108 SQLPEQALFYFNQMIGRGLVPGSNTFNNLLILLIKSNFFEKAWRVFNETKG-NVKLDVYS 166

Query: 67  YSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRI 126
           + ++++G      +++     F++  +M EE  LS N   +  L+D  C+ G +    ++
Sbjct: 167 FGIMIKGCCEVGYLDKG----FEVLGQM-EEMGLSPNVVVYTTLIDGCCKNGDIERGKQL 221

Query: 127 AEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK 186
              M +   V  ++    +I+   + G       +   M+  G+ P++ +YNS++   C 
Sbjct: 222 FYKMGELDVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRCCN 281

Query: 187 HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRI 246
            G    A++L +E  + G   +  TY  L+ GLC E      R+VL+             
Sbjct: 282 DGKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQE------RRVLEAE----------- 324

Query: 247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV 306
                R +C +K             +    P++I+ NT+I+G+C +G +++A  + N M 
Sbjct: 325 -----RLMCRMK-------------RDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMK 366

Query: 307 AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 366
           +    +P   T+  +I G  +  +    +  + + M  RG SP  VTY  ++  L R   
Sbjct: 367 SSG-QSPSLATYNILIAGF-SEAKNSAGVTDMVREMEARGLSPSKVTYTILMDALVRSDN 424

Query: 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAA 426
           +E+A ++++ M   G+VAD   Y ++I GLC    + EA + +  +       ++ +Y  
Sbjct: 425 IEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSLDEMHLKPNDVIYNT 484

Query: 427 MIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG 486
           MI G C+ G  + A+  L E+ ++G+ PN+  YN  I   CK     EA  +L++M + G
Sbjct: 485 MIYGYCKEGSSYRALRLLKEMGENGMVPNVASYNSTIQILCKDEKWTEAEVLLKDMIELG 544

Query: 487 LNPDAVTWRILDK 499
           L P    W ++ K
Sbjct: 545 LKPSISIWNMISK 557



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 94/388 (24%), Positives = 185/388 (47%), Gaps = 7/388 (1%)

Query: 5   CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS 64
           C +  + +  ++   M+  G  PNVV YTTLI G C+ G+++   ++F +M    V+ N 
Sbjct: 175 CEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQ 234

Query: 65  LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVF 124
            TY+VL+ G  +   +++  +   +L+E+MK    +  N   + +++   C +G +N  F
Sbjct: 235 YTYTVLINGFFKM-GLKKDGI---ELYEKMK-LTGIVPNVYTYNSMICRCCNDGKLNNAF 289

Query: 125 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184
            + ++M +            +I  LC+  R   A R++  M++ GL+P+L+SYN+++ G 
Sbjct: 290 ELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGY 349

Query: 185 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244
           C  G   +A  L  +    G  PS  TY +L+ G     +      +++ M ++      
Sbjct: 350 CSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSK 409

Query: 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304
               I + AL    N  +   +   M +     D+     +I+G C +G ++EA K+   
Sbjct: 410 VTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKS 469

Query: 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 364
           +       P+ V + T+I+G    G    AL LL + M + G  P + +YN+ ++ L + 
Sbjct: 470 LDEMHL-KPNDVIYNTMIYGYCKEGSSYRALRLLKE-MGENGMVPNVASYNSTIQILCKD 527

Query: 365 RRVEEAKEVFNCMLGIGVVADSTTYAIV 392
            +  EA+ +   M+ +G+    + + ++
Sbjct: 528 EKWTEAEVLLKDMIELGLKPSISIWNMI 555



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 121/233 (51%), Gaps = 5/233 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   RV EA +L   MK  G  PN++SY TLI GYC  G +D A  +F++M+  G  P+
Sbjct: 314 LCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPS 373

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
             TY++L+ G    ++      ++     R  E   LS +   +  L+D+L R   + + 
Sbjct: 374 LATYNILIAGFSEAKNSAGVTDMV-----REMEARGLSPSKVTYTILMDALVRSDNIEKA 428

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
           F+I   M +   V + +  G +I  LC  G    AS++   + +  L P+ V YN++++G
Sbjct: 429 FQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSLDEMHLKPNDVIYNTMIYG 488

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFML 236
            CK G   RA +LL+E  + G +P+  +Y   ++ LC +    +A  +L+ M+
Sbjct: 489 YCKEGSSYRALRLLKEMGENGMVPNVASYNSTIQILCKDEKWTEAEVLLKDMI 541



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 88/362 (24%), Positives = 165/362 (45%), Gaps = 7/362 (1%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C    +    +LF+ M     V N  +YT LI+G+ + G      +++++M+  G+
Sbjct: 206 IDGCCKNGDIERGKQLFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGI 265

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +PN  TY+ ++        +  A    F+L++ M+ E  ++ N   +  L+  LC+E  V
Sbjct: 266 VPNVYTYNSMICRCCNDGKLNNA----FELFDEMR-ERGVACNVVTYNTLIGGLCQERRV 320

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
            E  R+   M +        +   +ID  C  G    AS +   M+  G +PSL +YN +
Sbjct: 321 LEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNIL 380

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD 240
           + G  +         ++ E    G  PS+ TY +L++ L    ++EKA ++   M     
Sbjct: 381 IAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGL 440

Query: 241 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300
           V    I  + +  LC++ +  E   +   + +   +P+ +  NT+I G+CK G    AL+
Sbjct: 441 VADIYIYGVLIHGLCVVGDMKEASKLFKSLDEMHLKPNDVIYNTMIYGYCKEGSSYRALR 500

Query: 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360
           +L +M       P+  ++ + I  L    +  EA  +L + M + G  P I  +N + + 
Sbjct: 501 LLKEMGENGM-VPNVASYNSTIQILCKDEKWTEA-EVLLKDMIELGLKPSISIWNMISKA 558

Query: 361 LF 362
            F
Sbjct: 559 RF 560



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 112/230 (48%), Gaps = 3/230 (1%)

Query: 277 PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALN 336
           P   T N ++    K    E+A +V N+         D  +F  +I G   VG + +   
Sbjct: 128 PGSNTFNNLLILLIKSNFFEKAWRVFNETKGN--VKLDVYSFGIMIKGCCEVGYLDKGFE 185

Query: 337 LLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 396
           +L Q M + G SP +V Y  ++ G  +   +E  K++F  M  + VVA+  TY ++I+G 
Sbjct: 186 VLGQ-MEEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYTYTVLINGF 244

Query: 397 CESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNI 456
            +     +    ++ +     + + Y Y +MI   C  GK++ A     E+ + GV  N+
Sbjct: 245 FKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERGVACNV 304

Query: 457 VCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506
           V YN +I G C+     EA +++  M+++GL+P+ +++  L   + + GN
Sbjct: 305 VTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGN 354


>gi|302766715|ref|XP_002966778.1| hypothetical protein SELMODRAFT_62477 [Selaginella moellendorffii]
 gi|300166198|gb|EFJ32805.1| hypothetical protein SELMODRAFT_62477 [Selaginella moellendorffii]
          Length = 480

 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 126/492 (25%), Positives = 211/492 (42%), Gaps = 46/492 (9%)

Query: 10  VGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSV 69
           V +A  +  +MK  G  P+V S+  LI G+ ++G         D M   G+ PN++ Y+ 
Sbjct: 10  VAQAEAIVEEMKYAGFSPDVQSHCLLIRGFFKSGSFQRGCSQLDRMLEAGLFPNAILYN- 68

Query: 70  LVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAED 129
                                                  NL+  LC+ G + E     + 
Sbjct: 69  ---------------------------------------NLISCLCKAGMLAEAESYLKR 89

Query: 130 MPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG 189
           MPQ  + N   +   +ID  C++     A   +  M + G  P+  +Y+SIV   CK G 
Sbjct: 90  MPQHCAPNV-VSYNIIIDGYCKARNIEKALAFLREMEELGHPPTPHAYSSIVQSFCKTGN 148

Query: 190 CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNI 249
             +A  +  E    G  P    + VL+ GL     + +AR++ + M S+         N 
Sbjct: 149 VSKAMDVFAEMPAKGCEPDIVNFNVLLSGLWRARKIHEARELFRSMNSRGCKPDVVTYNT 208

Query: 250 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK 309
            +  LC  K   E + +L  M Q    P  +T  T+I+  CK  R+++A +V   M  G 
Sbjct: 209 MIAGLCKWKKLDEAVFLLERMKQEDVSPTFVTYTTLIDHLCKFARLQQAYEVFEKMAEGP 268

Query: 310 F-CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE 368
             C   A +   +I GL    R  EA  + +Q M  RG SP +VTYN +L GL    +++
Sbjct: 269 CPCTEPAYSVLILINGLCKARRPGEAKEM-FQEMRGRGISPTVVTYNTLLEGLLSTAKLQ 327

Query: 369 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI 428
           +A E+   ML      +  TY I+I  LC+++Q++EA +    +     +    ++  ++
Sbjct: 328 DAMELTYFMLDQVPAPNMFTYEILISSLCKTDQVEEAFKLLSAMRDKGFVPSLKIWEVLL 387

Query: 429 KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLN 488
             L R+G++ +A     E+        +   N+++DG  +     EA   L++M   G+ 
Sbjct: 388 SRLARAGRLDDAFELYKEMSRINCQQLVGSSNILLDGILRRGSVDEAKDFLKQMTDTGIV 447

Query: 489 PDAVTWRILDKL 500
           PD  T+   DKL
Sbjct: 448 PDKFTY---DKL 456



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 90/374 (24%), Positives = 169/374 (45%), Gaps = 33/374 (8%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C    + +A     +M+  GH P   +Y++++  +C+TG +  A  VF EM   G 
Sbjct: 105 IDGYCKARNIEKALAFLREMEELGHPPTPHAYSSIVQSFCKTGNVSKAMDVFAEMPAKGC 164

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKL---------------------WERMKE--- 96
            P+ + ++VL+ G+ R R +  A  L   +                     W+++ E   
Sbjct: 165 EPDIVNFNVLLSGLWRARKIHEARELFRSMNSRGCKPDVVTYNTMIAGLCKWKKLDEAVF 224

Query: 97  ------EEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE--FACGHMIDS 148
                 +ED+S     +  L+D LC+   + + + + E M +G     E  ++   +I+ 
Sbjct: 225 LLERMKQEDVSPTFVTYTTLIDHLCKFARLQQAYEVFEKMAEGPCPCTEPAYSVLILING 284

Query: 149 LCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPS 208
           LC++ R   A  +   MR RG++P++V+YN+++ GL        A +L    +     P+
Sbjct: 285 LCKARRPGEAKEMFQEMRGRGISPTVVTYNTLLEGLLSTAKLQDAMELTYFMLDQVPAPN 344

Query: 209 EHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLV 268
             TY++L+  LC    +E+A K+L  M  K  V   +I  + L  L       +   +  
Sbjct: 345 MFTYEILISSLCKTDQVEEAFKLLSAMRDKGFVPSLKIWEVLLSRLARAGRLDDAFELYK 404

Query: 269 FMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNV 328
            M +  CQ  V + N +++G  + G ++EA   L  M       PD  T+  ++ GL   
Sbjct: 405 EMSRINCQQLVGSSNILLDGILRRGSVDEAKDFLKQMTDTGI-VPDKFTYDKLVVGLCWQ 463

Query: 329 GRIQEALNLLYQVM 342
           G+  +A  L+ +++
Sbjct: 464 GKADQARKLVEELV 477



 Score = 44.3 bits (103), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 26/105 (24%), Positives = 53/105 (50%), Gaps = 1/105 (0%)

Query: 393 IDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGV 452
           I  L E++ + +A+   +++ +     D   +  +I+G  +SG        L  ++++G+
Sbjct: 1   IRKLVEADLVAQAEAIVEEMKYAGFSPDVQSHCLLIRGFFKSGSFQRGCSQLDRMLEAGL 60

Query: 453 TPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            PN + YN +I   CK  M  EA   L+ M ++   P+ V++ I+
Sbjct: 61  FPNAILYNNLISCLCKAGMLAEAESYLKRMPQH-CAPNVVSYNII 104


>gi|115474201|ref|NP_001060699.1| Os07g0688100 [Oryza sativa Japonica Group]
 gi|33146488|dbj|BAC79597.1| membrane-associated salt-inducible protein-like [Oryza sativa
           Japonica Group]
 gi|50509161|dbj|BAD30301.1| membrane-associated salt-inducible protein-like [Oryza sativa
           Japonica Group]
 gi|113612235|dbj|BAF22613.1| Os07g0688100 [Oryza sativa Japonica Group]
 gi|215678726|dbj|BAG95163.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222637719|gb|EEE67851.1| hypothetical protein OsJ_25651 [Oryza sativa Japonica Group]
          Length = 665

 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 118/479 (24%), Positives = 222/479 (46%), Gaps = 9/479 (1%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           ++S+G   +   Y  L+ GY R G+ D   + FDEM   G     + Y+  + GV+    
Sbjct: 151 VRSQGVAFHRSLYRVLLAGYARAGKFDSVIETFDEMVTSGCREFGVDYNRFI-GVM---- 205

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
           ++     + + +  M   +   +    ++  + +LC+   +  V  +  DM +     + 
Sbjct: 206 IKNCCFDLVEKYYNMALAKGFCLTPFTYSRWITALCQSNRIELVEELLTDMDKFGCFPDF 265

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
           +AC   +  LC   R + A ++V  M  +G  P +V+Y ++V  LC H     A  L EE
Sbjct: 266 WACNIYVHYLCGHNRLYDALQMVEKMTMKGTGPDVVTYTTVVSCLCDHRRFSEAVGLWEE 325

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
            ++ G  P       L+ GLC    +++A ++   ML+        I N  +       +
Sbjct: 326 MVRRGLKPDVVACGALIFGLCKNQKVDEAFELASRMLTLDIQLNVSIYNALISGFWRAGS 385

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM-VAGKFCAPDAVTF 318
             +    + FM +  C+PDV+T N ++N +C +G  ++A  ++  M ++G    PD  ++
Sbjct: 386 IEKAYKTVSFMQRNGCEPDVVTYNILLNHYCSIGMTDKAENLIRKMEMSG--VNPDRYSY 443

Query: 319 TTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCML 378
             ++ GL    ++ +A   +   M   G+   IV+ N ++    R ++V  A  +F  M 
Sbjct: 444 NILLKGLCKAHQLDKAFAFVSDHMEVGGFCD-IVSCNILIDAFCRAKKVNSALNLFKEMG 502

Query: 379 GIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIH 438
             G+ AD+ TY I+I+GL      + A+  +D ++    + +  VY  M+  LC+ G   
Sbjct: 503 YKGIQADAVTYGILINGLFGIGYSNLAEELFDQMLNTKIVPNVNVYNIMLHNLCKVGHFK 562

Query: 439 EAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            A    +++    V+P+ V +N +I    K S   EA  + +EMR  G+ PD +T+R +
Sbjct: 563 HAQKIFWQMTQKEVSPDTVTFNTLIYWLGKSSRAVEALDLFKEMRTKGVEPDNLTFRYI 621



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 101/407 (24%), Positives = 178/407 (43%), Gaps = 42/407 (10%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LCG +R+ +A ++   M  +G  P+VV+YTT++   C       A  +++EM   G+ P+
Sbjct: 275 LCGHNRLYDALQMVEKMTMKGTGPDVVTYTTVVSCLCDHRRFSEAVGLWEEMVRRGLKPD 334

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +    L+ G+ + + V+ A    F+L  RM    D+ +N + +  L+    R G + + 
Sbjct: 335 VVACGALIFGLCKNQKVDEA----FELASRML-TLDIQLNVSIYNALISGFWRAGSIEK- 388

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
                                             A + V  M++ G  P +V+YN +++ 
Sbjct: 389 ----------------------------------AYKTVSFMQRNGCEPDVVTYNILLNH 414

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            C  G   +A  L+ +    G  P  ++Y +L++GLC    L+KA   +   +       
Sbjct: 415 YCSIGMTDKAENLIRKMEMSGVNPDRYSYNILLKGLCKAHQLDKAFAFVSDHMEVGGFCD 474

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
              CNI + A C  K     LN+   M     Q D +T   +ING   +G    A ++ +
Sbjct: 475 IVSCNILIDAFCRAKKVNSALNLFKEMGYKGIQADAVTYGILINGLFGIGYSNLAEELFD 534

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            M+  K   P+   +  ++  L  VG  + A  + +Q M Q+  SP  VT+N ++  L +
Sbjct: 535 QMLNTKI-VPNVNVYNIMLHNLCKVGHFKHAQKIFWQ-MTQKEVSPDTVTFNTLIYWLGK 592

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD 410
             R  EA ++F  M   GV  D+ T+  +I GL +  +   A   W+
Sbjct: 593 SSRAVEALDLFKEMRTKGVEPDNLTFRYIISGLLDEGKATLAYEIWE 639



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 91/343 (26%), Positives = 149/343 (43%), Gaps = 7/343 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R  EA  L+ +M  RG  P+VV+   LI G C+  ++D A+++   M    +  N
Sbjct: 310 LCDHRRFSEAVGLWEEMVRRGLKPDVVACGALIFGLCKNQKVDEAFELASRMLTLDIQLN 369

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
              Y+ L+ G  R   +E+A   +    +R   E D+   N     L++  C  G  ++ 
Sbjct: 370 VSIYNALISGFWRAGSIEKAYKTV-SFMQRNGCEPDVVTYNI----LLNHYCSIGMTDKA 424

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             +   M       + ++   ++  LC++ +   A   V    + G    +VS N ++  
Sbjct: 425 ENLIRKMEMSGVNPDRYSYNILLKGLCKAHQLDKAFAFVSDHMEVGGFCDIVSCNILIDA 484

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            C+      A  L +E    G      TY +L+ GL G      A ++   ML+ K V  
Sbjct: 485 FCRAKKVNSALNLFKEMGYKGIQADAVTYGILINGLFGIGYSNLAEELFDQMLNTKIVPN 544

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
             + NI L  LC + +      +   M Q +  PD +T NT+I    K  R  EAL +  
Sbjct: 545 VNVYNIMLHNLCKVGHFKHAQKIFWQMTQKEVSPDTVTFNTLIYWLGKSSRAVEALDLFK 604

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
           +M   K   PD +TF  II GLL+ G+   A   +++ M + G
Sbjct: 605 EMRT-KGVEPDNLTFRYIISGLLDEGKATLAYE-IWEYMMENG 645



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 112/221 (50%), Gaps = 4/221 (1%)

Query: 280 ITLNTVINGFCKMGRIEEALKVLNDMVAGKF-CAPDAVTFTTIIFGLLNVGRIQEALNLL 338
            T +  I   C+  RIE   ++L DM   KF C PD       +  L    R+ +AL ++
Sbjct: 231 FTYSRWITALCQSNRIELVEELLTDM--DKFGCFPDFWACNIYVHYLCGHNRLYDALQMV 288

Query: 339 YQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE 398
            + M  +G  P +VTY  V+  L   RR  EA  ++  M+  G+  D      +I GLC+
Sbjct: 289 -EKMTMKGTGPDVVTYTTVVSCLCDHRRFSEAVGLWEEMVRRGLKPDVVACGALIFGLCK 347

Query: 399 SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVC 458
           + ++DEA      ++      +  +Y A+I G  R+G I +A   +  +  +G  P++V 
Sbjct: 348 NQKVDEAFELASRMLTLDIQLNVSIYNALISGFWRAGSIEKAYKTVSFMQRNGCEPDVVT 407

Query: 459 YNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
           YN++++  C + M  +A  ++R+M  +G+NPD  ++ IL K
Sbjct: 408 YNILLNHYCSIGMTDKAENLIRKMEMSGVNPDRYSYNILLK 448



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/236 (21%), Positives = 106/236 (44%), Gaps = 5/236 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C +    +A  L   M+  G  P+  SY  L+ G C+  ++D A+    +    G 
Sbjct: 412 LNHYCSIGMTDKAENLIRKMEMSGVNPDRYSYNILLKGLCKAHQLDKAFAFVSDHMEVGG 471

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             + ++ ++L+    R + V  A      L++ M   + +  +   +  L++ L   GY 
Sbjct: 472 FCDIVSCNILIDAFCRAKKVNSA----LNLFKEMG-YKGIQADAVTYGILINGLFGIGYS 526

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           N    + + M   K V        M+ +LC+ G    A ++ + M ++ ++P  V++N++
Sbjct: 527 NLAEELFDQMLNTKIVPNVNVYNIMLHNLCKVGHFKHAQKIFWQMTQKEVSPDTVTFNTL 586

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFML 236
           ++ L K    + A  L +E    G  P   T++ ++ GL  E     A ++ ++M+
Sbjct: 587 IYWLGKSSRAVEALDLFKEMRTKGVEPDNLTFRYIISGLLDEGKATLAYEIWEYMM 642



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/204 (21%), Positives = 82/204 (40%), Gaps = 40/204 (19%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C   +V  A  LF +M  +G   + V+Y  LI+G    G  ++A ++FD+M +  +
Sbjct: 482 IDAFCRAKKVNSALNLFKEMGYKGIQADAVTYGILINGLFGIGYSNLAEELFDQMLNTKI 541

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +PN   Y++++                                         +LC+ G+ 
Sbjct: 542 VPNVNVYNIMLH----------------------------------------NLCKVGHF 561

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
               +I   M Q +   +      +I  L +S R   A  +   MR +G+ P  +++  I
Sbjct: 562 KHAQKIFWQMTQKEVSPDTVTFNTLIYWLGKSSRAVEALDLFKEMRTKGVEPDNLTFRYI 621

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFG 204
           + GL   G    AY++ E  ++ G
Sbjct: 622 ISGLLDEGKATLAYEIWEYMMENG 645


>gi|218200292|gb|EEC82719.1| hypothetical protein OsI_27404 [Oryza sativa Indica Group]
          Length = 665

 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 118/479 (24%), Positives = 222/479 (46%), Gaps = 9/479 (1%)

Query: 20  MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79
           ++S+G   +   Y  L+ GY R G+ D   + FDEM   G     + Y+  + GV+    
Sbjct: 151 VRSQGVAFHRSLYRVLLAGYARAGKFDSVIETFDEMVTSGCREFGVDYNRFI-GVM---- 205

Query: 80  VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 139
           ++     + + +  M   +   +    ++  + +LC+   +  V  +  DM +     + 
Sbjct: 206 IKNCCFDLVEKYYNMALAKGFCLTPFTYSRWITALCQSNRIELVEELLTDMDKFGCFPDF 265

Query: 140 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 199
           +AC   +  LC   R + A ++V  M  +G  P +V+Y ++V  LC H     A  L EE
Sbjct: 266 WACNIYVHYLCGHNRLYDALQMVEKMTMKGTGPDVVTYTTVVSCLCDHRRFSEAVGLWEE 325

Query: 200 GIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 259
            ++ G  P       L+ GLC    +++A ++   ML+        I N  +       +
Sbjct: 326 MVRRGLKPDVVACGALIFGLCKNQKVDEAFELASRMLTLDIQLNVSIYNALISGFWRAGS 385

Query: 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM-VAGKFCAPDAVTF 318
             +    + FM +  C+PDV+T N ++N +C +G  ++A  ++  M ++G    PD  ++
Sbjct: 386 IEKAYKTVSFMQRNGCEPDVVTYNILLNHYCSIGMTDKAENLIRKMEMSG--VNPDRYSY 443

Query: 319 TTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCML 378
             ++ GL    ++ +A   +   M   G+   IV+ N ++    R ++V  A  +F  M 
Sbjct: 444 NILLKGLCKAHQLDKAFAFVSDHMEVGGFCD-IVSCNILIDAFCRAKKVNSALNLFKEMG 502

Query: 379 GIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIH 438
             G+ AD+ TY I+I+GL      + A+  +D ++    + +  VY  M+  LC+ G   
Sbjct: 503 YKGIQADAVTYGILINGLFGIGYSNLAEELFDQMLNTKIVPNVNVYNIMLHNLCKVGHFK 562

Query: 439 EAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497
            A    +++    V+P+ V +N +I    K S   EA  + +EMR  G+ PD +T+R +
Sbjct: 563 HAQKIFWQMTQKEVSPDTVTFNTLIYWLGKSSRAVEALDLFKEMRTKGVEPDNLTFRYI 621



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 101/407 (24%), Positives = 178/407 (43%), Gaps = 42/407 (10%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LCG +R+ +A ++   M  +G  P+VV+YTT++   C       A  +++EM   G+ P+
Sbjct: 275 LCGHNRLYDALQMVEKMTMKGTGPDVVTYTTVVSCLCDHRRFSEAVGLWEEMVRRGLKPD 334

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
            +    L+ G+ + + V+ A    F+L  RM    D+ +N + +  L+    R G + + 
Sbjct: 335 VVACGALIFGLCKNQKVDEA----FELASRML-TLDIQLNVSIYNALISGFWRAGSIEK- 388

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
                                             A + V  M++ G  P +V+YN +++ 
Sbjct: 389 ----------------------------------AYKTVSFMQRNGCEPDVVTYNILLNH 414

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            C  G   +A  L+ +    G  P  ++Y +L++GLC    L+KA   +   +       
Sbjct: 415 YCSIGMTDKAENLIRKMEMSGVNPDRYSYNILLKGLCKAHQLDKAFAFVSDHMEVGGFCD 474

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
              CNI + A C  K     LN+   M     Q D +T   +ING   +G    A ++ +
Sbjct: 475 IVSCNILIDAFCRAKKVNSALNLFKEMGYKGIQADAVTYGILINGLFGIGYSNLAEELFD 534

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363
            M+  K   P+   +  ++  L  VG  + A  + +Q M Q+  SP  VT+N ++  L +
Sbjct: 535 QMLNTKI-VPNVNVYNIMLHNLCKVGHFKHAQKIFWQ-MTQKEVSPDTVTFNTLIYWLGK 592

Query: 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD 410
             R  EA ++F  M   GV  D+ T+  +I GL +  +   A   W+
Sbjct: 593 SSRAVEALDLFKEMRTKGVEPDNLTFRYIISGLLDEGKATLAYEIWE 639



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 91/343 (26%), Positives = 149/343 (43%), Gaps = 7/343 (2%)

Query: 4   LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63
           LC   R  EA  L+ +M  RG  P+VV+   LI G C+  ++D A+++   M    +  N
Sbjct: 310 LCDHRRFSEAVGLWEEMVRRGLKPDVVACGALIFGLCKNQKVDEAFELASRMLTLDIQLN 369

Query: 64  SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123
              Y+ L+ G  R   +E+A   +    +R   E D+   N     L++  C  G  ++ 
Sbjct: 370 VSIYNALISGFWRAGSIEKAYKTV-SFMQRNGCEPDVVTYNI----LLNHYCSIGMTDKA 424

Query: 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 183
             +   M       + ++   ++  LC++ +   A   V    + G    +VS N ++  
Sbjct: 425 ENLIRKMEMSGVNPDRYSYNILLKGLCKAHQLDKAFAFVSDHMEVGGFCDIVSCNILIDA 484

Query: 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR 243
            C+      A  L +E    G      TY +L+ GL G      A ++   ML+ K V  
Sbjct: 485 FCRAKKVNSALNLFKEMGYKGIQADAVTYGILINGLFGIGYSNLAEELFDQMLNTKIVPN 544

Query: 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 303
             + NI L  LC + +      +   M Q +  PD +T NT+I    K  R  EAL +  
Sbjct: 545 VNVYNIMLHNLCKVGHFKHAQKIFWQMTQKEVSPDTVTFNTLIYWLGKSSRAVEALDLFK 604

Query: 304 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 346
           +M   K   PD +TF  II GLL+ G+   A   +++ M + G
Sbjct: 605 EMRT-KGVEPDNLTFRYIISGLLDEGKATLAYE-IWEYMMENG 645



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 112/221 (50%), Gaps = 4/221 (1%)

Query: 280 ITLNTVINGFCKMGRIEEALKVLNDMVAGKF-CAPDAVTFTTIIFGLLNVGRIQEALNLL 338
            T +  I   C+  RIE   ++L DM   KF C PD       +  L    R+ +AL ++
Sbjct: 231 FTYSRWITALCQSNRIELVEELLTDM--DKFGCFPDFWACNIYVHYLCGHNRLYDALQMV 288

Query: 339 YQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE 398
            + M  +G  P +VTY  V+  L   RR  EA  ++  M+  G+  D      +I GLC+
Sbjct: 289 -EKMTMKGTGPDVVTYTTVVSCLCDHRRFSEAVGLWEEMVRRGLKPDVVACGALIFGLCK 347

Query: 399 SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVC 458
           + ++DEA      ++      +  +Y A+I G  R+G I +A   +  +  +G  P++V 
Sbjct: 348 NQKVDEAFELASRMLTLDIQLNVSIYNALISGFWRAGSIEKAYKTVSFMQRNGCEPDVVT 407

Query: 459 YNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499
           YN++++  C + M  +A  ++R+M  +G+NPD  ++ IL K
Sbjct: 408 YNILLNHYCSIGMTDKAENLIRKMEMSGVNPDRYSYNILLK 448



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/236 (21%), Positives = 106/236 (44%), Gaps = 5/236 (2%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           ++  C +    +A  L   M+  G  P+  SY  L+ G C+  ++D A+    +    G 
Sbjct: 412 LNHYCSIGMTDKAENLIRKMEMSGVNPDRYSYNILLKGLCKAHQLDKAFAFVSDHMEVGG 471

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
             + ++ ++L+    R + V  A      L++ M   + +  +   +  L++ L   GY 
Sbjct: 472 FCDIVSCNILIDAFCRAKKVNSA----LNLFKEMG-YKGIQADAVTYGILINGLFGIGYS 526

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
           N    + + M   K V        M+ +LC+ G    A ++ + M ++ ++P  V++N++
Sbjct: 527 NLAEELFDQMLNTKIVPNVNVYNIMLHNLCKVGHFKHAQKIFWQMTQKEVSPDTVTFNTL 586

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFML 236
           ++ L K    + A  L +E    G  P   T++ ++ GL  E     A ++ ++M+
Sbjct: 587 IYWLGKSSRAVEALDLFKEMRTKGVEPDNLTFRYIISGLLDEGKATLAYEIWEYMM 642



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/204 (21%), Positives = 82/204 (40%), Gaps = 40/204 (19%)

Query: 1   MDQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV 60
           +D  C   +V  A  LF +M  +G   + V+Y  LI+G    G  ++A ++FD+M +  +
Sbjct: 482 IDAFCRAKKVNSALNLFKEMGYKGIQADAVTYGILINGLFGIGYSNLAEELFDQMLNTKI 541

Query: 61  LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV 120
           +PN   Y++++                                         +LC+ G+ 
Sbjct: 542 VPNVNVYNIMLH----------------------------------------NLCKVGHF 561

Query: 121 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 180
               +I   M Q +   +      +I  L +S R   A  +   MR +G+ P  +++  I
Sbjct: 562 KHAQKIFWQMTQKEVSPDTVTFNTLIYWLGKSSRAVEALDLFKEMRTKGVEPDNLTFRYI 621

Query: 181 VHGLCKHGGCMRAYQLLEEGIQFG 204
           + GL   G    AY++ E  ++ G
Sbjct: 622 ISGLLDEGKATLAYEIWEYMMENG 645


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.325    0.140    0.427 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,910,254,063
Number of Sequences: 23463169
Number of extensions: 323963269
Number of successful extensions: 1171079
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 6130
Number of HSP's successfully gapped in prelim test: 5388
Number of HSP's that attempted gapping in prelim test: 887412
Number of HSP's gapped (non-prelim): 94316
length of query: 512
length of database: 8,064,228,071
effective HSP length: 147
effective length of query: 365
effective length of database: 8,910,109,524
effective search space: 3252189976260
effective search space used: 3252189976260
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 79 (35.0 bits)